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<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="76" xmlns="http://uniprot.org/uniprot">
    <accession>A9BLH0</accession>
    <name>A9BLH0_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="10">Diguanylate cyclase/phosphodiesterase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="10" type="ordered locus">Daci_3824</name>
    </gene>
    <organism evidence="10 11">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="10 11" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="11">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="11" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="11">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX36455.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
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    <dbReference type="RefSeq" id="WP_012205649.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_3824"/>
    <dbReference type="PRIDE" id="A9BLH0"/>
    <dbReference type="EnsemblBacteria" id="ABX36455">
        <property type="protein sequence ID" value="ABX36455"/>
        <property type="gene ID" value="Daci_3824"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_3824"/>
    <dbReference type="eggNOG" id="COG2199">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="eggNOG" id="COG2200">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="eggNOG" id="COG4191">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_000445_78_2_4"/>
    <dbReference type="OMA" id="IYTNADE"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0007165">
        <property type="term" value="P:signal transduction"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd01948">
        <property type="entry name" value="EAL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="CDD" id="cd01949">
        <property type="entry name" value="GGDEF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.20.20.450">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.70.270">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR033479">
        <property type="entry name" value="dCache_1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001633">
        <property type="entry name" value="EAL_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035919">
        <property type="entry name" value="EAL_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000160">
        <property type="entry name" value="GGDEF_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003660">
        <property type="entry name" value="HAMP_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029787">
        <property type="entry name" value="Nucleotide_cyclase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043128">
        <property type="entry name" value="Rev_trsase/Diguanyl_cyclase"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02743">
        <property type="entry name" value="dCache_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00563">
        <property type="entry name" value="EAL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00990">
        <property type="entry name" value="GGDEF"/>
        <property type="match status" value="1"/>
    </dbReference>
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        <property type="entry name" value="HAMP"/>
        <property type="match status" value="1"/>
    </dbReference>
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        <property type="entry name" value="EAL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00267">
        <property type="entry name" value="GGDEF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00304">
        <property type="entry name" value="HAMP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF141868">
        <property type="entry name" value="SSF141868"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55073">
        <property type="entry name" value="SSF55073"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50883">
        <property type="entry name" value="EAL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50887">
        <property type="entry name" value="GGDEF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50885">
        <property type="entry name" value="HAMP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="5 6" id="KW-0472">Membrane</keyword>
    <keyword evidence="11" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 6" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="4 6" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="32"/>
            <end position="51"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="372"/>
            <end position="389"/>
        </location>
    </feature>
    <feature type="domain" description="HAMP" evidence="8">
        <location>
            <begin position="392"/>
            <end position="446"/>
        </location>
    </feature>
    <feature type="domain" description="GGDEF" evidence="9">
        <location>
            <begin position="480"/>
            <end position="613"/>
        </location>
    </feature>
    <feature type="domain" description="EAL" evidence="7">
        <location>
            <begin position="622"/>
            <end position="876"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="PROSITE" id="PS50883"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="PROSITE" id="PS50885"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="9">
        <source>
            <dbReference type="PROSITE" id="PS50887"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="EMBL" id="ABX36455.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="877" mass="96165" checksum="299D1D828BECF4DB" modified="2008-01-15" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="28" xmlns="http://uniprot.org/uniprot">
    <accession>A9BLL8</accession>
    <name>A9BLL8_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Daci_3872</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="2" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX36503.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_3872"/>
    <dbReference type="PRIDE" id="A9BLL8"/>
    <dbReference type="EnsemblBacteria" id="ABX36503">
        <property type="protein sequence ID" value="ABX36503"/>
        <property type="gene ID" value="Daci_3872"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_3872"/>
    <dbReference type="HOGENOM" id="CLU_1683690_0_0_4"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ABX36503.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="156" mass="18248" checksum="4C75F162B19161C1" modified="2008-01-15" version="1">MMNTERLLSFLGHTSTSDDFESFLLENDIKKMPKGDSTTRIKTKDKLISMEFDPTDSYKEKYLSPPIGDGWFTFESFDINKGFEKENPFNLAFAMDKSQVEEKLGKSVSKNQEDLVQAYQKDNHIIIIFYKNKWKGIETIRIRKINKFDAKNLNLK</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="61" xmlns="http://uniprot.org/uniprot">
    <accession>A9BLU3</accession>
    <name>A9BLU3_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Pseudouridine synthase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_4251</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX36882.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012206054.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_4251"/>
    <dbReference type="PRIDE" id="A9BLU3"/>
    <dbReference type="EnsemblBacteria" id="ABX36882">
        <property type="protein sequence ID" value="ABX36882"/>
        <property type="gene ID" value="Daci_4251"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_4251"/>
    <dbReference type="eggNOG" id="COG0564">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_016902_0_0_4"/>
    <dbReference type="OMA" id="HYFREVP"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0140098">
        <property type="term" value="F:catalytic activity, acting on RNA"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009982">
        <property type="term" value="F:pseudouridine synthase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003723">
        <property type="term" value="F:RNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0034470">
        <property type="term" value="P:ncRNA processing"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="GO" id="GO:0001522">
        <property type="term" value="P:pseudouridine synthesis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020103">
        <property type="entry name" value="PsdUridine_synth_cat_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006224">
        <property type="entry name" value="PsdUridine_synth_RluC/D_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006145">
        <property type="entry name" value="PsdUridine_synth_RsuA/RluA"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00849">
        <property type="entry name" value="PseudoU_synth_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55120">
        <property type="entry name" value="SSF55120"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01129">
        <property type="entry name" value="PSI_RLU"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="PseudoU_synth_2" evidence="1">
        <location>
            <begin position="100"/>
            <end position="247"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF00849"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX36882.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="305" mass="35015" checksum="6404F7F866BBF844" modified="2008-01-15" version="1">MHNAHDPKVLPIRDGVSPSCVVLPSQGGGLLIDFLAERLPAVAREDWLRRLALREVVDEHGRAADAGTAFAPGLRYYYYRELQAEPPIPFEAEVLHRDAHLLVADKPHFLPVVPAGKYLQQTLLVRLKREFDLPELSPIHRIDRDTAGLVVFSVQRATRGIYQALFRDRAIHKTYEAVAPWREDVVFPRTHESRMEESGHFFRMHEVAGTPNTRTHMQVLEQHGRWARYRLEPESGKRHQLRVHMAALGLPLWGDGFYPEVHDMPEGDYSRPLQLLARSLAFTDPLDGQSRRFDSRRQLLPLTDL</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="67" xmlns="http://uniprot.org/uniprot">
    <accession>A9BLX9</accession>
    <name>A9BLX9_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="3">N-acetyltransferase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Daci_4287</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="4" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1 2">Belongs to the arylamine N-acetyltransferase family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX36918.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012206090.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_4287"/>
    <dbReference type="PRIDE" id="A9BLX9"/>
    <dbReference type="EnsemblBacteria" id="ABX36918">
        <property type="protein sequence ID" value="ABX36918"/>
        <property type="gene ID" value="Daci_4287"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_4287"/>
    <dbReference type="eggNOG" id="COG2162">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_049918_1_1_4"/>
    <dbReference type="OMA" id="FCKSLCT"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016407">
        <property type="term" value="F:acetyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001447">
        <property type="entry name" value="Arylamine_N-AcTrfase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038765">
        <property type="entry name" value="Papain-like_cys_pep_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11786">
        <property type="entry name" value="PTHR11786"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00797">
        <property type="entry name" value="Acetyltransf_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR01543">
        <property type="entry name" value="ANATRNSFRASE"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54001">
        <property type="entry name" value="SSF54001"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0808">Transferase</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00006547"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="RuleBase" id="RU003452"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ABX36918.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="264" mass="29002" checksum="BD672F46FBD175E3" modified="2008-01-15" version="1">MQASNFDLQAYFRRIGFSAGDSAQANAATLHALMRQQLFSVPFENLDVQAGKIVSLVPEDIAGKILGGARGGYCYEVNGLFAMALQALGIAYRFVAARPMFYPARRPRTHMALVAEVEGRRWLCDLGFGSYGIRAPMALDVLDTEVRQDGDTFRLSLDDQGEYLLQARVDGEWANQYAFNLSPQEWVDFAPANYLNSTHPDAIFVQKRVVVLHQPAGRMILVGDALKTVTASGTETRQLAPDEIQHVLGSLFGLATERQAAAVC</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="71" xmlns="http://uniprot.org/uniprot">
    <accession>A9BMF0</accession>
    <name>A9BMF0_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="8">Acetolactate synthase small subunit</fullName>
            <shortName evidence="8">AHAS</shortName>
            <shortName evidence="8">ALS</shortName>
            <ecNumber evidence="8">2.2.1.6</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="8">Acetohydroxy-acid synthase small subunit</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="10" type="ordered locus">Daci_4866</name>
    </gene>
    <organism evidence="10 11">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="10 11" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="11">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="11" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="11">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="8">Catalyzes the conversion of 2 pyruvate molecules into acetolactate in the first common step of the biosynthetic pathway of the branched-amino acids such as leucine, isoleucine, and valine.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1 8">
            <text>H(+) + 2 pyruvate = (2S)-2-acetolactate + CO2</text>
            <dbReference type="Rhea" id="RHEA:25249"/>
            <dbReference type="ChEBI" id="CHEBI:15361"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:16526"/>
            <dbReference type="ChEBI" id="CHEBI:58476"/>
            <dbReference type="EC" id="2.2.1.6"/>
        </reaction>
    </comment>
    <comment type="pathway">
        <text evidence="2 8">Amino-acid biosynthesis; L-isoleucine biosynthesis; L-isoleucine from 2-oxobutanoate: step 1/4.</text>
    </comment>
    <comment type="pathway">
        <text evidence="3 8">Amino-acid biosynthesis; L-valine biosynthesis; L-valine from pyruvate: step 1/4.</text>
    </comment>
    <comment type="subunit">
        <text evidence="5 8">Dimer of large and small chains.</text>
    </comment>
    <comment type="similarity">
        <text evidence="4 8">Belongs to the acetolactate synthase small subunit family.</text>
    </comment>
    <dbReference type="EC" id="2.2.1.6" evidence="8"/>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX37495.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012206665.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_4866"/>
    <dbReference type="PRIDE" id="A9BMF0"/>
    <dbReference type="EnsemblBacteria" id="ABX37495">
        <property type="protein sequence ID" value="ABX37495"/>
        <property type="gene ID" value="Daci_4866"/>
    </dbReference>
    <dbReference type="GeneID" id="60689210"/>
    <dbReference type="KEGG" id="dac:Daci_4866"/>
    <dbReference type="eggNOG" id="COG0440">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_055003_1_3_4"/>
    <dbReference type="OMA" id="EPYGIKE"/>
    <dbReference type="UniPathway" id="UPA00047">
        <property type="reaction ID" value="UER00055"/>
    </dbReference>
    <dbReference type="UniPathway" id="UPA00049">
        <property type="reaction ID" value="UER00059"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003984">
        <property type="term" value="F:acetolactate synthase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:1990610">
        <property type="term" value="F:acetolactate synthase regulator activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009097">
        <property type="term" value="P:isoleucine biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009099">
        <property type="term" value="P:valine biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd04878">
        <property type="entry name" value="ACT_AHAS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.70.1150">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004789">
        <property type="entry name" value="Acetalactate_synth_ssu"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027271">
        <property type="entry name" value="Acetolactate_synth/TF_NikR_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019455">
        <property type="entry name" value="Acetolactate_synth_ssu_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045865">
        <property type="entry name" value="ACT-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002912">
        <property type="entry name" value="ACT_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR039557">
        <property type="entry name" value="AHAS_ACT"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30239">
        <property type="entry name" value="PTHR30239"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF10369">
        <property type="entry name" value="ALS_ss_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55021">
        <property type="entry name" value="SSF55021"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00119">
        <property type="entry name" value="acolac_sm"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51671">
        <property type="entry name" value="ACT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="6 8" id="KW-0028">Amino-acid biosynthesis</keyword>
    <keyword evidence="7 8" id="KW-0100">Branched-chain amino acid biosynthesis</keyword>
    <keyword evidence="11" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="8" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="ACT" evidence="9">
        <location>
            <begin position="4"/>
            <end position="78"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00000673"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00004974"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00005025"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00006341"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00011744"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022605"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023304"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="RuleBase" id="RU368092"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="9">
        <source>
            <dbReference type="PROSITE" id="PS51671"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="EMBL" id="ABX37495.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="163" mass="18210" checksum="5DBF4F35143E8813" modified="2008-01-15" version="1">MKHIIAVLLENEPGALSRVVGLFSARGYNIESLTVAPTEDASLSRMTIQTNGSEDVIEQITKHLNRLIEVVKVVDLTEGSYTERELMMVKVRAVGKEREEMKRMADIFRGRIIDVTEKSYTVELTGDQSKNDAFLQALDRTAILETVRTGSCGIGRGERILRV</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="71" xmlns="http://uniprot.org/uniprot">
    <accession>A9BMJ2</accession>
    <name>A9BMJ2_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">Citrate synthase (unknown stereospecificity)</fullName>
            <ecNumber evidence="2">2.3.3.16</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="4" type="ordered locus">Daci_4908</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="5" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="pathway">
        <text evidence="1">Carbohydrate metabolism; tricarboxylic acid cycle; isocitrate from oxaloacetate: step 1/2.</text>
    </comment>
    <dbReference type="EC" id="2.3.3.16" evidence="2"/>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX37537.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012206707.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_4908"/>
    <dbReference type="PRIDE" id="A9BMJ2"/>
    <dbReference type="EnsemblBacteria" id="ABX37537">
        <property type="protein sequence ID" value="ABX37537"/>
        <property type="gene ID" value="Daci_4908"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_4908"/>
    <dbReference type="eggNOG" id="COG0372">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_025068_1_0_4"/>
    <dbReference type="OMA" id="PETVYAY"/>
    <dbReference type="UniPathway" id="UPA00223">
        <property type="reaction ID" value="UER00717"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0036440">
        <property type="term" value="F:citrate synthase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006099">
        <property type="term" value="P:tricarboxylic acid cycle"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniPathway"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.230.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.580.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016142">
        <property type="entry name" value="Citrate_synth-like_lrg_a-sub"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016143">
        <property type="entry name" value="Citrate_synth-like_sm_a-sub"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002020">
        <property type="entry name" value="Citrate_synthase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036969">
        <property type="entry name" value="Citrate_synthase_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041657">
        <property type="entry name" value="HTH_17"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11739">
        <property type="entry name" value="PTHR11739"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00285">
        <property type="entry name" value="Citrate_synt"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12728">
        <property type="entry name" value="HTH_17"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00143">
        <property type="entry name" value="CITRTSNTHASE"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48256">
        <property type="entry name" value="SSF48256"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HTH_17" evidence="3">
        <location>
            <begin position="4"/>
            <end position="55"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004751"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00012972"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF12728"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="ABX37537.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="397" mass="42229" checksum="548341CB3F6F55AF" modified="2008-01-15" version="1">MPDYLNSTEATALLGVSRATLYAYVSRGLLHAHAADTPRESRYLREEVEQLARQRGQGRKPREVAQAALNWGLPVLESSITLIEQGRLYYRGEDAVDWARSHTLEEAAALLWQYPADAAFAAHAVEAAPVLADLQQRMAGQPCENTLLALFTVASDDAATAAWQQSPERLAAGCGALLRLLAACLLGTAPDKAPIHLQCAQAWALDTQGADLVRMALVLCADHELNASGFTARCVASTGASLRAAVVGGLAALTGGRHGGTTARVEALWDELGEAQAPARLRQRLARGETLPGFGHHLYPEGDVRAALLLEMLPRQGPAAALAAEVMALTGLAPSVDFALVALRRHLQLPTGSAFGLFALGRCAGWLAQALEQRATRQIIRPRAAYTGPRPAGLARN</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="65" xmlns="http://uniprot.org/uniprot">
    <accession>A9BMP5</accession>
    <name>A9BMP5_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Alpha/beta hydrolase fold</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_4961</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX37590.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012206760.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_4961"/>
    <dbReference type="PRIDE" id="A9BMP5"/>
    <dbReference type="EnsemblBacteria" id="ABX37590">
        <property type="protein sequence ID" value="ABX37590"/>
        <property type="gene ID" value="Daci_4961"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_4961"/>
    <dbReference type="eggNOG" id="COG2267">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_020336_50_2_4"/>
    <dbReference type="OMA" id="QNDHSVW"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016787">
        <property type="term" value="F:hydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.1820">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029058">
        <property type="entry name" value="AB_hydrolase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000073">
        <property type="entry name" value="AB_hydrolase_1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00561">
        <property type="entry name" value="Abhydrolase_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00111">
        <property type="entry name" value="ABHYDROLASE"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53474">
        <property type="entry name" value="SSF53474"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="AB hydrolase-1" evidence="1">
        <location>
            <begin position="27"/>
            <end position="157"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF00561"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX37590.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="269" mass="28114" checksum="00CAA3618A3D5E7E" modified="2008-01-15" version="1">MKIDVQGHAIYAYTGGKAFNPAQPTAILIHGVLCDHSVWALQSRYLANHGWNVLAIDLPGHCRSAGDAPASVEAAADFIGQLMDAAGIGKAALVGHSWGSLIAMEAAARLGARVSHLVLVGTAYPMKVSPALLDSALSTPEQAIRMVNVFSRATLAPPSGAGSWVFGAGMALGRRVLASNDRTNLLHTGFKACDSYAGGEAAMAALQCPVLFALGEQDQMTPPKAAKGLIEAARGAQRQVSIVHLPSGHNQMTEAPDQTLFAIRDFLAR</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-05-25" version="78" xmlns="http://uniprot.org/uniprot">
    <accession>A9BMR5</accession>
    <name>A9BMR5_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="3">4-hydroxythreonine-4-phosphate dehydrogenase</fullName>
            <ecNumber evidence="3">1.1.1.262</ecNumber>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Daci_4981</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="4" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EC" id="1.1.1.262" evidence="3"/>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX37610.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012206780.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_4981"/>
    <dbReference type="EnsemblBacteria" id="ABX37610">
        <property type="protein sequence ID" value="ABX37610"/>
        <property type="gene ID" value="Daci_4981"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_4981"/>
    <dbReference type="eggNOG" id="COG1995">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_040168_0_1_4"/>
    <dbReference type="OMA" id="CGREEID"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0050570">
        <property type="term" value="F:4-hydroxythreonine-4-phosphate dehydrogenase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051287">
        <property type="term" value="F:NAD binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005255">
        <property type="entry name" value="PdxA_fam"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30004">
        <property type="entry name" value="PTHR30004"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04166">
        <property type="entry name" value="PdxA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="2 3" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023002"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ABX37610.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="342" mass="36182" checksum="193ABB07A8507F97" modified="2008-01-15" version="1">MPASELPVVALTLGDPAGIGAELIARLLARPEAMQKANIVLAGDPWLWQQGQRIAGLQVATAPIASMAHARGRTDTALPAFLALDTVAPDAVHQGRAEAAGGRSVLQVLDLCMDAAQAGQIDAICFAPLNKQAMKLGGLRHEDELHHFAEYLGVTGYFCEFNTLGDLWTSRISSHVPLRDVAGYLSQERIAQAAELIYRALLASGMAAPKVAVAGFNPHNGDGGTCGREEIDIIAPAVRALQARDWPTPDPFHGPFPADTIFLKAQAGEYQAIVTMYHDQGQIAIKLLGFSRGVTVQGGLPIPITTPAHGTAYDIAGQGRASVEATWQAFLIACRMGAARLS</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="58" xmlns="http://uniprot.org/uniprot">
    <accession>A9BMU2</accession>
    <name>A9BMU2_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Phosphoribosyltransferase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_5008</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX37637.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012206807.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_5008"/>
    <dbReference type="PRIDE" id="A9BMU2"/>
    <dbReference type="EnsemblBacteria" id="ABX37637">
        <property type="protein sequence ID" value="ABX37637"/>
        <property type="gene ID" value="Daci_5008"/>
    </dbReference>
    <dbReference type="GeneID" id="60689356"/>
    <dbReference type="KEGG" id="dac:Daci_5008"/>
    <dbReference type="eggNOG" id="COG2236">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_080904_2_0_4"/>
    <dbReference type="OMA" id="WEFNQIV"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016757">
        <property type="term" value="F:glycosyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd06223">
        <property type="entry name" value="PRTases_typeI"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.2020">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000836">
        <property type="entry name" value="PRibTrfase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029057">
        <property type="entry name" value="PRTase-like"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00156">
        <property type="entry name" value="Pribosyltran"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53271">
        <property type="entry name" value="SSF53271"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0328">Glycosyltransferase</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Pribosyltran" evidence="1">
        <location>
            <begin position="14"/>
            <end position="161"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF00156"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX37637.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="174" mass="19675" checksum="023E8FA7584B209A" modified="2008-01-15" version="1">MLTEDGQHLYVSYDEYHGLIEKLAIKVHQSGWEFDTILCLARGGLRPGDMLSRIFDKPLAIMSTSSYRAEAGTVQGHLDIARFITTPKGEIAGRVLLVDDLADSGHTLNAVIAMLKTNYPPITELRSAVIWTKGLSAFTPDYSVDYLPTNPWIHQPFEHYDTLRPEKLMEKWKI</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="78" xmlns="http://uniprot.org/uniprot">
    <accession>A9BMW0</accession>
    <name>A9BMW0_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">Pseudouridine synthase</fullName>
            <ecNumber evidence="3">5.4.99.-</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="7" type="ordered locus">Daci_5026</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="8" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="3">Responsible for synthesis of pseudouridine from uracil.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="3">
            <text>a uridine in RNA = a pseudouridine in RNA</text>
            <dbReference type="Rhea" id="RHEA:48348"/>
            <dbReference type="Rhea" id="RHEA-COMP:12068"/>
            <dbReference type="Rhea" id="RHEA-COMP:12069"/>
            <dbReference type="ChEBI" id="CHEBI:65314"/>
            <dbReference type="ChEBI" id="CHEBI:65315"/>
        </reaction>
    </comment>
    <comment type="similarity">
        <text evidence="1 3">Belongs to the pseudouridine synthase RluA family.</text>
    </comment>
    <dbReference type="EC" id="5.4.99.-" evidence="3"/>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX37655.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012206825.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_5026"/>
    <dbReference type="PRIDE" id="A9BMW0"/>
    <dbReference type="EnsemblBacteria" id="ABX37655">
        <property type="protein sequence ID" value="ABX37655"/>
        <property type="gene ID" value="Daci_5026"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_5026"/>
    <dbReference type="eggNOG" id="COG0564">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_016902_4_0_4"/>
    <dbReference type="OMA" id="AHPSPGW"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016798">
        <property type="term" value="F:hydrolase activity, acting on glycosyl bonds"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003723">
        <property type="term" value="F:RNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0120159">
        <property type="term" value="F:rRNA pseudouridine synthase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000455">
        <property type="term" value="P:enzyme-directed rRNA pseudouridine synthesis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="CDD" id="cd02869">
        <property type="entry name" value="PseudoU_synth_RluA_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="CDD" id="cd00165">
        <property type="entry name" value="S4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.10.290.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020103">
        <property type="entry name" value="PsdUridine_synth_cat_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006225">
        <property type="entry name" value="PsdUridine_synth_RluC/D"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006224">
        <property type="entry name" value="PsdUridine_synth_RluC/D_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006145">
        <property type="entry name" value="PsdUridine_synth_RsuA/RluA"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002942">
        <property type="entry name" value="S4_RNA-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036986">
        <property type="entry name" value="S4_RNA-bd_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00849">
        <property type="entry name" value="PseudoU_synth_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01479">
        <property type="entry name" value="S4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55120">
        <property type="entry name" value="SSF55120"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00005">
        <property type="entry name" value="rluA_subfam"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01129">
        <property type="entry name" value="PSI_RLU"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="7" id="KW-0326">Glycosidase</keyword>
    <keyword evidence="7" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="3" id="KW-0413">Isomerase</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="S4" evidence="6">
        <location>
            <begin position="59"/>
            <end position="104"/>
        </location>
    </feature>
    <feature type="domain" description="PseudoU_synth_2" evidence="5">
        <location>
            <begin position="133"/>
            <end position="289"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="4">
        <location>
            <begin position="1"/>
            <end position="38"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="4">
        <location>
            <begin position="1"/>
            <end position="15"/>
        </location>
    </feature>
    <feature type="active site" evidence="2">
        <location>
            <position position="180"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00010876"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="PIRSR" id="PIRSR606225-1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="RuleBase" id="RU362028"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="Pfam" id="PF00849"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="Pfam" id="PF01479"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="ABX37655.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="356" mass="38361" checksum="00CF8BB135EE670E" modified="2008-01-15" version="1">MSRSTRQTGQAPAPQGLVSSAPGESPWEPVEDEAEGGEVEAAAAELREITVPPAQHGLRADKVLAECVAEFSRSYLQQLLAQGAVTLNGRVLVKPATKVAAGDRMVLEMRPTQQSMAFQPEDMALDVVYEDEHLLVVNKPAGLVVHPAPGNWTGTLLNGLLGRDPKAREVPRAGIVHRLDKDTSGLMVVARSRAAMDALVAMIAARDVSRQYLALAHKAWGPRKHREVDAPIGRDPRNRLRMAVVDLAQHAGKTARTDIDLLAGNEEVSLVRCTLHTGRTHQIRVHMASLGHPLVADAVYGGKEAGGMARQALHAFRLAFTHPMTGQALVLRAPLPPDMAQALENWGLSYNPAESL</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="74" xmlns="http://uniprot.org/uniprot">
    <accession>A9BMZ6</accession>
    <name>A9BMZ6_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="8">Na+/solute symporter</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="8" type="ordered locus">Daci_5062</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="9" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2 6">Belongs to the sodium:solute symporter (SSF) (TC 2.A.21) family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX37691.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012206861.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_5062"/>
    <dbReference type="PRIDE" id="A9BMZ6"/>
    <dbReference type="EnsemblBacteria" id="ABX37691">
        <property type="protein sequence ID" value="ABX37691"/>
        <property type="gene ID" value="Daci_5062"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_5062"/>
    <dbReference type="eggNOG" id="COG4147">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_018808_8_2_4"/>
    <dbReference type="OMA" id="GTTWVQM"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0022857">
        <property type="term" value="F:transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.1730.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018247">
        <property type="entry name" value="EF_Hand_1_Ca_BS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038377">
        <property type="entry name" value="Na/Glc_symporter_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001734">
        <property type="entry name" value="Na/solute_symporter"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019899">
        <property type="entry name" value="Na/solute_symporter_VC_2705"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00474">
        <property type="entry name" value="SSF"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR03648">
        <property type="entry name" value="Na_symport_lg"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00018">
        <property type="entry name" value="EF_HAND_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50283">
        <property type="entry name" value="NA_SOLUT_SYMP_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5 7" id="KW-0472">Membrane</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 7" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="4 7" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="21"/>
            <end position="39"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="45"/>
            <end position="68"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="89"/>
            <end position="111"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="123"/>
            <end position="147"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="168"/>
            <end position="193"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="199"/>
            <end position="217"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="229"/>
            <end position="248"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="395"/>
            <end position="417"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="429"/>
            <end position="450"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="516"/>
            <end position="545"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="565"/>
            <end position="583"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="589"/>
            <end position="614"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="621"/>
            <end position="638"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="658"/>
            <end position="683"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00006434"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="RuleBase" id="RU362091"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="ABX37691.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="699" mass="76067" checksum="25FD2DB9AC8F7BBB" modified="2008-01-15" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="61" xmlns="http://uniprot.org/uniprot">
    <accession>A9BN92</accession>
    <name>A9BN92_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Putative addiction module antidote protein, CopG/Arc/MetJ family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Daci_5158</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="2" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX37787.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012206957.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_5158"/>
    <dbReference type="PRIDE" id="A9BN92"/>
    <dbReference type="EnsemblBacteria" id="ABX37787">
        <property type="protein sequence ID" value="ABX37787"/>
        <property type="gene ID" value="Daci_5158"/>
    </dbReference>
    <dbReference type="GeneID" id="60689508"/>
    <dbReference type="KEGG" id="dac:Daci_5158"/>
    <dbReference type="eggNOG" id="COG3609">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_144805_3_0_4"/>
    <dbReference type="OMA" id="VSQRGYG"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006355">
        <property type="term" value="P:regulation of transcription, DNA-templated"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.1220.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013321">
        <property type="entry name" value="Arc_rbn_hlx_hlx"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR022789">
        <property type="entry name" value="ParD"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010985">
        <property type="entry name" value="Ribbon_hlx_hlx"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR36582">
        <property type="entry name" value="PTHR36582"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03693">
        <property type="entry name" value="ParD_antitoxin"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47598">
        <property type="entry name" value="SSF47598"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR02606">
        <property type="entry name" value="antidote_CC2985"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ABX37787.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="77" mass="8575" checksum="610FC335FD9D244E" modified="2008-01-15" version="1">MSTMNISLPDTLKSFVDEQVSQRGYGTSSEYVRELIRRDQERLQLRNLLLAGAGSAPAAAVDAGYFDGLRERAKARR</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2021-06-02" version="39" xmlns="http://uniprot.org/uniprot">
    <accession>A9BNH0</accession>
    <name>A9BNH0_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="6">Entericidin EcnAB</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ordered locus">Daci_5236</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="7" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the EcnA/EcnB lipoprotein family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX37865.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012207035.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_5236"/>
    <dbReference type="EnsemblBacteria" id="ABX37865">
        <property type="protein sequence ID" value="ABX37865"/>
        <property type="gene ID" value="Daci_5236"/>
    </dbReference>
    <dbReference type="GeneID" id="60689581"/>
    <dbReference type="KEGG" id="dac:Daci_5236"/>
    <dbReference type="eggNOG" id="COG5510">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_193827_7_1_4"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009636">
        <property type="term" value="P:response to toxic substance"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012556">
        <property type="entry name" value="Entericidin"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08085">
        <property type="entry name" value="Entericidin"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="4" id="KW-0472">Membrane</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 5" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="5">
        <location>
            <begin position="1"/>
            <end position="18"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5002735635" evidence="5">
        <location>
            <begin position="19"/>
            <end position="41"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00010296"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022729"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="ABX37865.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="41" mass="4207" checksum="9F69903C23BC2A8E" modified="2008-01-15" version="1">MKPSFSILLIGLAFTLAACNTVKGIGQDVQSAGSAIERAAR</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="92" xmlns="http://uniprot.org/uniprot">
    <accession>A9BNM6</accession>
    <name>A9BNM6_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Transcriptional regulator, AraC family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ordered locus">Daci_5292</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="6" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX37921.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_5292"/>
    <dbReference type="PRIDE" id="A9BNM6"/>
    <dbReference type="EnsemblBacteria" id="ABX37921">
        <property type="protein sequence ID" value="ABX37921"/>
        <property type="gene ID" value="Daci_5292"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_5292"/>
    <dbReference type="eggNOG" id="COG2207">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_000445_87_4_4"/>
    <dbReference type="OMA" id="QQAAWIP"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003700">
        <property type="term" value="F:DNA-binding transcription factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043565">
        <property type="term" value="F:sequence-specific DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.120.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003313">
        <property type="entry name" value="AraC-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009057">
        <property type="entry name" value="Homeobox-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018060">
        <property type="entry name" value="HTH_AraC"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018062">
        <property type="entry name" value="HTH_AraC-typ_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014710">
        <property type="entry name" value="RmlC-like_jellyroll"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011051">
        <property type="entry name" value="RmlC_Cupin_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02311">
        <property type="entry name" value="AraC_binding"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12833">
        <property type="entry name" value="HTH_18"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00342">
        <property type="entry name" value="HTH_ARAC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46689">
        <property type="entry name" value="SSF46689"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51182">
        <property type="entry name" value="SSF51182"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00041">
        <property type="entry name" value="HTH_ARAC_FAMILY_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01124">
        <property type="entry name" value="HTH_ARAC_FAMILY_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0804">Transcription</keyword>
    <keyword evidence="1" id="KW-0805">Transcription regulation</keyword>
    <feature type="domain" description="HTH araC/xylS-type" evidence="4">
        <location>
            <begin position="229"/>
            <end position="306"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023015"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023163"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="PROSITE" id="PS01124"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="ABX37921.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="310" mass="33249" checksum="2A8FF896AD769845" modified="2008-01-15" version="1">MRAGCLSVFIEFLIFYMDLDNMRTTHAPASAAAVPCSHAGLPELQAAAPLPVTGVAADYPAGLEVEEHSHECCQLLYAVQGVLEVRAGSGRWVVPPTRGVWLRSGVPHGLRMRGAVQVRSLFVDAQAAADLPGTDCVIEVSPLLRELISEVARWPASAPPGRRESMVVELLLQELRQPPVVPFHLPWPQDARMAAVCHALAEGEGADGFATAAAAADIGAATATAADWAARLAMGEKTFHRHFLQATGMSFGRWRQRARLLSSMQALLAGRPIVQVALEAGYESHSAYSLAFRRQFGMPPSAFGARGDRP</sequence>
</entry>
<entry dataset="Swiss-Prot" created="2009-04-14" modified="2022-08-03" version="62" xmlns="http://uniprot.org/uniprot">
    <accession>A9BNU9</accession>
    <name>RL28_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">50S ribosomal protein L28</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="1" type="primary">rpmB</name>
        <name type="ordered locus">Daci_5365</name>
    </gene>
    <organism>
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference key="1">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain>DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the bacterial ribosomal protein bL28 family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX37994.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012207163.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A9BNU9"/>
    <dbReference type="SMR" id="A9BNU9"/>
    <dbReference type="STRING" id="398578.Daci_5365"/>
    <dbReference type="PRIDE" id="A9BNU9"/>
    <dbReference type="EnsemblBacteria" id="ABX37994">
        <property type="protein sequence ID" value="ABX37994"/>
        <property type="gene ID" value="Daci_5365"/>
    </dbReference>
    <dbReference type="GeneID" id="60689713"/>
    <dbReference type="KEGG" id="dac:Daci_5365"/>
    <dbReference type="eggNOG" id="COG0227">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_064548_3_1_4"/>
    <dbReference type="OMA" id="FEPNLHT"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005840">
        <property type="term" value="C:ribosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003735">
        <property type="term" value="F:structural constituent of ribosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006412">
        <property type="term" value="P:translation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.30.170.40">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00373">
        <property type="entry name" value="Ribosomal_L28"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR034704">
        <property type="entry name" value="L28p-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR026569">
        <property type="entry name" value="Ribo_L28/L24"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037147">
        <property type="entry name" value="Ribo_L28/L24_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001383">
        <property type="entry name" value="Ribosomal_L28"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR13528">
        <property type="entry name" value="PTHR13528"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00830">
        <property type="entry name" value="Ribosomal_L28"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF143800">
        <property type="entry name" value="SSF143800"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00009">
        <property type="entry name" value="L28"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword id="KW-1185">Reference proteome</keyword>
    <keyword id="KW-0687">Ribonucleoprotein</keyword>
    <keyword id="KW-0689">Ribosomal protein</keyword>
    <feature type="chain" id="PRO_1000121618" description="50S ribosomal protein L28">
        <location>
            <begin position="1"/>
            <end position="77"/>
        </location>
    </feature>
    <evidence type="ECO:0000255" key="1">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00373"/>
        </source>
    </evidence>
    <sequence length="77" mass="8866" checksum="8F4A97B124ECA039" modified="2008-01-15" version="1">MARVCEVTGKKPMVGNNVSHANNKTKRRFLPNLQYRRFWVESENRWVRLRVSSAALRLIDKNGIDSVLADLRARGQA</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="89" xmlns="http://uniprot.org/uniprot">
    <accession>A9BP02</accession>
    <name>A9BP02_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">Histidine kinase</fullName>
            <ecNumber evidence="2">2.7.13.3</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="7" type="ordered locus">Daci_5418</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="8" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>ATP + protein L-histidine = ADP + protein N-phospho-L-histidine.</text>
            <dbReference type="EC" id="2.7.13.3"/>
        </reaction>
    </comment>
    <dbReference type="EC" id="2.7.13.3" evidence="2"/>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX38047.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012207216.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_5418"/>
    <dbReference type="PRIDE" id="A9BP02"/>
    <dbReference type="EnsemblBacteria" id="ABX38047">
        <property type="protein sequence ID" value="ABX38047"/>
        <property type="gene ID" value="Daci_5418"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_5418"/>
    <dbReference type="eggNOG" id="COG4251">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="eggNOG" id="COG4252">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_016084_0_0_4"/>
    <dbReference type="OMA" id="YPLWSWL"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000155">
        <property type="term" value="F:phosphorelay sensor kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd00082">
        <property type="entry name" value="HisKA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.565.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007890">
        <property type="entry name" value="CHASE2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003594">
        <property type="entry name" value="HATPase_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036890">
        <property type="entry name" value="HATPase_C_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005467">
        <property type="entry name" value="His_kinase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003661">
        <property type="entry name" value="HisK_dim/P"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036097">
        <property type="entry name" value="HisK_dim/P_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004358">
        <property type="entry name" value="Sig_transdc_His_kin-like_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017181">
        <property type="entry name" value="Sig_transdc_His_kin_CHASE2"/>
    </dbReference>
    <dbReference type="Pfam" id="PF05226">
        <property type="entry name" value="CHASE2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02518">
        <property type="entry name" value="HATPase_c"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF037347">
        <property type="entry name" value="STHK_CHASE2_PAS_prd"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00344">
        <property type="entry name" value="BCTRLSENSOR"/>
    </dbReference>
    <dbReference type="SMART" id="SM01080">
        <property type="entry name" value="CHASE2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00387">
        <property type="entry name" value="HATPase_c"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47384">
        <property type="entry name" value="SSF47384"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55874">
        <property type="entry name" value="SSF55874"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50109">
        <property type="entry name" value="HIS_KIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="7" id="KW-0418">Kinase</keyword>
    <keyword evidence="5" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-0597">Phosphoprotein</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="7" id="KW-0808">Transferase</keyword>
    <keyword evidence="5" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="5" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="345"/>
            <end position="365"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="371"/>
            <end position="388"/>
        </location>
    </feature>
    <feature type="domain" description="Histidine kinase" evidence="6">
        <location>
            <begin position="570"/>
            <end position="787"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="4">
        <location>
            <begin position="1"/>
            <end position="21"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Pro residues" evidence="4">
        <location>
            <begin position="1"/>
            <end position="15"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00000085"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00012438"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022553"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="PROSITE" id="PS50109"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="ABX38047.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="789" mass="84241" checksum="14300FDFE8ABEEC5" modified="2008-01-15" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="85" xmlns="http://uniprot.org/uniprot">
    <accession>A9BPG2</accession>
    <name>A9BPG2_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Alcohol dehydrogenase zinc-binding domain protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ordered locus">Daci_0183</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="6" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="2">
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </cofactor>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the zinc-containing alcohol dehydrogenase family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX32829.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012202122.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_0183"/>
    <dbReference type="PRIDE" id="A9BPG2"/>
    <dbReference type="EnsemblBacteria" id="ABX32829">
        <property type="protein sequence ID" value="ABX32829"/>
        <property type="gene ID" value="Daci_0183"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_0183"/>
    <dbReference type="eggNOG" id="COG1062">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_026673_14_1_4"/>
    <dbReference type="OMA" id="AGWCQTD"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016616">
        <property type="term" value="F:oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008270">
        <property type="term" value="F:zinc ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013149">
        <property type="entry name" value="ADH-like_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013154">
        <property type="entry name" value="ADH_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002328">
        <property type="entry name" value="ADH_Zn_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011032">
        <property type="entry name" value="GroES-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036291">
        <property type="entry name" value="NAD(P)-bd_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020843">
        <property type="entry name" value="PKS_ER"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08240">
        <property type="entry name" value="ADH_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00107">
        <property type="entry name" value="ADH_zinc_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00829">
        <property type="entry name" value="PKS_ER"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50129">
        <property type="entry name" value="SSF50129"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51735">
        <property type="entry name" value="SSF51735"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00059">
        <property type="entry name" value="ADH_ZINC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-0472">Membrane</keyword>
    <keyword evidence="2" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="1" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="3" id="KW-1133">Transmembrane helix</keyword>
    <keyword evidence="2" id="KW-0862">Zinc</keyword>
    <feature type="transmembrane region" description="Helical" evidence="3">
        <location>
            <begin position="166"/>
            <end position="186"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="3">
        <location>
            <begin position="198"/>
            <end position="223"/>
        </location>
    </feature>
    <feature type="domain" description="PKS_ER" evidence="4">
        <location>
            <begin position="18"/>
            <end position="372"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023002"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="RuleBase" id="RU361277"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="SMART" id="SM00829"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="ABX32829.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="376" mass="38930" checksum="046AF6E30924C836" modified="2008-01-15" version="1">MKTRAAVLTRTGAAAPYADSRPLEIWEVDLAPPGPGEVLVKVAAAGVCHSDLSIINGDRPRDTPIVLGHEAAGVIQALGEGVTDLEVGDHVVMLFVPGCGNCQPCAEGRPVLCEPAGQAGVAGTLLSGARRLSRNGQPISHFVGVSAFAEHAVLSRRGVHRIDKSVPLELAALFGCAVMTGVGAVANTARVSPGQSVAVVGLGGVGLSSVMGAAAAGAARVVAVDLNADKLAMAREFGATDIVNAGDEDAVKQVRELTGGGVDHAFEMVGSAKALEMAYRITRRGGQTVTAGLPSSAQAISLPVWHLVAEERTLKGCYMGSCVPRRDIDRYLALHAAGRLPVDRLVTGHLTLDQINEGFDRLARGEAIRQIIRMDA</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="85" xmlns="http://uniprot.org/uniprot">
    <accession>A9BPQ4</accession>
    <name>A9BPQ4_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Two component transcriptional regulator, LuxR family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ordered locus">Daci_0377</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="6" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX33023.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012202316.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_0377"/>
    <dbReference type="PRIDE" id="A9BPQ4"/>
    <dbReference type="EnsemblBacteria" id="ABX33023">
        <property type="protein sequence ID" value="ABX33023"/>
        <property type="gene ID" value="Daci_0377"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_0377"/>
    <dbReference type="eggNOG" id="COG2197">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_000445_90_10_4"/>
    <dbReference type="OMA" id="HQGNANF"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000160">
        <property type="term" value="P:phosphorelay signal transduction system"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006355">
        <property type="term" value="P:regulation of transcription, DNA-templated"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd06170">
        <property type="entry name" value="LuxR_C_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011006">
        <property type="entry name" value="CheY-like_superfamily"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016032">
        <property type="entry name" value="Sig_transdc_resp-reg_C-effctor"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001789">
        <property type="entry name" value="Sig_transdc_resp-reg_receiver"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000792">
        <property type="entry name" value="Tscrpt_reg_LuxR_C"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00196">
        <property type="entry name" value="GerE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00072">
        <property type="entry name" value="Response_reg"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00038">
        <property type="entry name" value="HTHLUXR"/>
    </dbReference>
    <dbReference type="SMART" id="SM00421">
        <property type="entry name" value="HTH_LUXR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00448">
        <property type="entry name" value="REC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46894">
        <property type="entry name" value="SSF46894"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52172">
        <property type="entry name" value="SSF52172"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50043">
        <property type="entry name" value="HTH_LUXR_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50110">
        <property type="entry name" value="RESPONSE_REGULATORY"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="2" id="KW-0597">Phosphoprotein</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Response regulatory" evidence="4">
        <location>
            <begin position="20"/>
            <end position="140"/>
        </location>
    </feature>
    <feature type="domain" description="HTH luxR-type" evidence="3">
        <location>
            <begin position="173"/>
            <end position="238"/>
        </location>
    </feature>
    <feature type="modified residue" description="4-aspartylphosphate" evidence="2">
        <location>
            <position position="75"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00169"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="PROSITE" id="PS50043"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="PROSITE" id="PS50110"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="ABX33023.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="245" mass="25864" checksum="D7FB5D82B1A224AB" modified="2008-01-15" version="1">MDTHTDPYSAAATGGATPIRVAVVEDDAACRHALVGVINAAKDMVLCWAAASRAEALHQLGRADGAGAMDVMLVDLGLPDGSGLEVIAAVRTRHPGAAVMVSTIFGDEQHVLAAIEAGAMGYLLKDLAADAVLEEVRSLHAGGSPINPMVARKLLLRQQRAGAVAGLQPPAEPQAAAQALSARELEVLRLVARGHTLDEVARQLGVSRHTVRTFVRRIYGKLQVSSRTQMMHVALQRGWLAEGRQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="64" xmlns="http://uniprot.org/uniprot">
    <accession>A9BPS8</accession>
    <name>A9BPS8_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">Glutathione-dependent peroxiredoxin</fullName>
            <ecNumber evidence="3">1.11.1.27</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="5" type="ordered locus">Daci_0401</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="6" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="3">Thiol-specific peroxidase that catalyzes the reduction of hydrogen peroxide and organic hydroperoxides to water and alcohols, respectively. Plays a role in cell protection against oxidative stress by detoxifying peroxides.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="3">
            <text>a hydroperoxide + 2 glutathione = an alcohol + glutathione disulfide + H2O</text>
            <dbReference type="Rhea" id="RHEA:62632"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:30879"/>
            <dbReference type="ChEBI" id="CHEBI:35924"/>
            <dbReference type="ChEBI" id="CHEBI:57925"/>
            <dbReference type="ChEBI" id="CHEBI:58297"/>
            <dbReference type="EC" id="1.11.1.27"/>
        </reaction>
    </comment>
    <comment type="similarity">
        <text evidence="3">Belongs to the peroxiredoxin family. Prx5 subfamily.</text>
    </comment>
    <dbReference type="EC" id="1.11.1.27" evidence="3"/>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX33047.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_0401"/>
    <dbReference type="PRIDE" id="A9BPS8"/>
    <dbReference type="EnsemblBacteria" id="ABX33047">
        <property type="protein sequence ID" value="ABX33047"/>
        <property type="gene ID" value="Daci_0401"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_0401"/>
    <dbReference type="eggNOG" id="COG0678">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_072440_1_2_4"/>
    <dbReference type="OMA" id="GYINHPK"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004601">
        <property type="term" value="F:peroxidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd03013">
        <property type="entry name" value="PRX5_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037944">
        <property type="entry name" value="PRX5-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013740">
        <property type="entry name" value="Redoxin"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036249">
        <property type="entry name" value="Thioredoxin-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013766">
        <property type="entry name" value="Thioredoxin_domain"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10430">
        <property type="entry name" value="PTHR10430"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08534">
        <property type="entry name" value="Redoxin"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52833">
        <property type="entry name" value="SSF52833"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51352">
        <property type="entry name" value="THIOREDOXIN_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-0049">Antioxidant</keyword>
    <keyword evidence="2 3" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="1 3" id="KW-0575">Peroxidase</keyword>
    <keyword evidence="3" id="KW-0676">Redox-active center</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Thioredoxin" evidence="4">
        <location>
            <begin position="26"/>
            <end position="192"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022559"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023002"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="RuleBase" id="RU366011"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="PROSITE" id="PS51352"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="ABX33047.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="192" mass="20168" checksum="20EFB5615F78A725" modified="2008-01-15" version="1">MWVVFSFGDHHFGGPRFCTTKEIEMIKVGDALPAATLMEYVEVEGNGCSIGPNPVKLPEAAAGKTIAVFAVPGAFTPTCSAKHVPGFVEQAEAFKAAGVDEIWCLSVNDAFVMGAWARDQKTDGKVRMLADGDAAFAKATGLTLDLNGKGLGLRSNRYSMLVKDGKVATLNVEGPGKFEVSDAATLLGQAKA</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="74" xmlns="http://uniprot.org/uniprot">
    <accession>A9BQ18</accession>
    <name>A9BQ18_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="12">Cytochrome c biogenesis protein transmembrane region</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="12" type="ordered locus">Daci_0587</name>
    </gene>
    <organism evidence="12 13">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="12 13" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="13">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="13" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="13">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX33233.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_0587"/>
    <dbReference type="PRIDE" id="A9BQ18"/>
    <dbReference type="EnsemblBacteria" id="ABX33233">
        <property type="protein sequence ID" value="ABX33233"/>
        <property type="gene ID" value="Daci_0587"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_0587"/>
    <dbReference type="eggNOG" id="COG4232">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="eggNOG" id="COG4233">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_014657_1_0_4"/>
    <dbReference type="OMA" id="FNQIYGP"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015036">
        <property type="term" value="F:disulfide oxidoreductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="GO" id="GO:0017004">
        <property type="term" value="P:cytochrome complex assembly"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd02953">
        <property type="entry name" value="DsbDgamma"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003834">
        <property type="entry name" value="Cyt_c_assmbl_TM_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035671">
        <property type="entry name" value="DsbD_gamma"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR028250">
        <property type="entry name" value="DsbDN"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036249">
        <property type="entry name" value="Thioredoxin-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017937">
        <property type="entry name" value="Thioredoxin_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013766">
        <property type="entry name" value="Thioredoxin_domain"/>
    </dbReference>
    <dbReference type="Pfam" id="PF11412">
        <property type="entry name" value="DsbC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02683">
        <property type="entry name" value="DsbD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52833">
        <property type="entry name" value="SSF52833"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00194">
        <property type="entry name" value="THIOREDOXIN_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51352">
        <property type="entry name" value="THIOREDOXIN_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="5" id="KW-0201">Cytochrome c-type biogenesis</keyword>
    <keyword evidence="8" id="KW-1015">Disulfide bond</keyword>
    <keyword evidence="7 10" id="KW-0472">Membrane</keyword>
    <keyword evidence="9" id="KW-0676">Redox-active center</keyword>
    <keyword evidence="13" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4" id="KW-0732">Signal</keyword>
    <keyword evidence="3 10 12" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="6 10" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="10">
        <location>
            <begin position="57"/>
            <end position="78"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="10">
        <location>
            <begin position="399"/>
            <end position="424"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="10">
        <location>
            <begin position="445"/>
            <end position="469"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="10">
        <location>
            <begin position="481"/>
            <end position="504"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="10">
        <location>
            <begin position="525"/>
            <end position="551"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="10">
        <location>
            <begin position="557"/>
            <end position="583"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="10">
        <location>
            <begin position="595"/>
            <end position="615"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="10">
        <location>
            <begin position="621"/>
            <end position="642"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="10">
        <location>
            <begin position="649"/>
            <end position="670"/>
        </location>
    </feature>
    <feature type="domain" description="Thioredoxin" evidence="11">
        <location>
            <begin position="661"/>
            <end position="798"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022729"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022748"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00023157"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00023284"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="11">
        <source>
            <dbReference type="PROSITE" id="PS51352"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="EMBL" id="ABX33233.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="13">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="798" mass="84340" checksum="6AB5755D6ECEE180" modified="2008-01-15" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="78" xmlns="http://uniprot.org/uniprot">
    <accession>A9BQ29</accession>
    <name>A9BQ29_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">Flagellar biosynthesis protein FlhF</fullName>
        </recommendedName>
        <alternativeName>
            <fullName evidence="9">Flagella-associated GTP-binding protein</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="13" type="ordered locus">Daci_0598</name>
    </gene>
    <organism evidence="13 14">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="13 14" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="14">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="14" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="14">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="8">Necessary for flagellar biosynthesis. May be involved in translocation of the flagellum.</text>
    </comment>
    <comment type="similarity">
        <text evidence="1">Belongs to the GTP-binding SRP family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX33244.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012202530.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_0598"/>
    <dbReference type="PRIDE" id="A9BQ29"/>
    <dbReference type="EnsemblBacteria" id="ABX33244">
        <property type="protein sequence ID" value="ABX33244"/>
        <property type="gene ID" value="Daci_0598"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_0598"/>
    <dbReference type="eggNOG" id="COG1419">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_009301_11_5_4"/>
    <dbReference type="OMA" id="FFAADMR"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005525">
        <property type="term" value="F:GTP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003924">
        <property type="term" value="F:GTPase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0044781">
        <property type="term" value="P:bacterial-type flagellum organization"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006614">
        <property type="term" value="P:SRP-dependent cotranslational protein targeting to membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003593">
        <property type="entry name" value="AAA+_ATPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020006">
        <property type="entry name" value="FlhF"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000897">
        <property type="entry name" value="SRP54_GTPase_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43134:SF3">
        <property type="entry name" value="PTHR43134:SF3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00448">
        <property type="entry name" value="SRP54"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00382">
        <property type="entry name" value="AAA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00962">
        <property type="entry name" value="SRP54"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR03499">
        <property type="entry name" value="FlhF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-1005">Bacterial flagellum biogenesis</keyword>
    <keyword evidence="7" id="KW-1006">Bacterial flagellum protein export</keyword>
    <keyword evidence="3" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="6" id="KW-0342">GTP-binding</keyword>
    <keyword evidence="3" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="7" id="KW-0653">Protein transport</keyword>
    <keyword evidence="14" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="7" id="KW-0813">Transport</keyword>
    <feature type="domain" description="AAA" evidence="11">
        <location>
            <begin position="325"/>
            <end position="470"/>
        </location>
    </feature>
    <feature type="domain" description="SRP54" evidence="12">
        <location>
            <begin position="326"/>
            <end position="516"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="10">
        <location>
            <begin position="52"/>
            <end position="76"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="10">
        <location>
            <begin position="183"/>
            <end position="236"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00008531"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00014919"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022795"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023134"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023225"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00025337"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00030866"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="11">
        <source>
            <dbReference type="SMART" id="SM00382"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="12">
        <source>
            <dbReference type="SMART" id="SM00962"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="13">
        <source>
            <dbReference type="EMBL" id="ABX33244.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="14">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="548" mass="59029" checksum="CCFF48F586039A1B" modified="2008-01-15" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="64" xmlns="http://uniprot.org/uniprot">
    <accession>A9BQ56</accession>
    <name>A9BQ56_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="5">Peptidoglycan hydrolase FlgJ</fullName>
        </recommendedName>
        <alternativeName>
            <fullName evidence="8">Muramidase FlgJ</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="10" type="ordered locus">Daci_0625</name>
    </gene>
    <organism evidence="10 11">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="10 11" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="11">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="11" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="11">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="1">Flagellum-specific muramidase which hydrolyzes the peptidoglycan layer to assemble the rod structure in the periplasmic space.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="2">Periplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="4">In the C-terminal section; belongs to the glycosyl hydrolase 73 family.</text>
    </comment>
    <comment type="similarity">
        <text evidence="3">In the N-terminal section; belongs to the FlgJ family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX33271.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012202557.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_0625"/>
    <dbReference type="CAZy" id="GH73">
        <property type="family name" value="Glycoside Hydrolase Family 73"/>
    </dbReference>
    <dbReference type="PRIDE" id="A9BQ56"/>
    <dbReference type="EnsemblBacteria" id="ABX33271">
        <property type="protein sequence ID" value="ABX33271"/>
        <property type="gene ID" value="Daci_0625"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_0625"/>
    <dbReference type="eggNOG" id="COG1705">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="eggNOG" id="COG3951">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_013771_3_0_4"/>
    <dbReference type="OMA" id="EGVFVQM"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0042597">
        <property type="term" value="C:periplasmic space"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004040">
        <property type="term" value="F:amidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016798">
        <property type="term" value="F:hydrolase activity, acting on glycosyl bonds"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0044780">
        <property type="term" value="P:bacterial-type flagellum assembly"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008152">
        <property type="term" value="P:metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019301">
        <property type="entry name" value="Flagellar_prot_FlgJ_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013377">
        <property type="entry name" value="FlaJ"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002901">
        <property type="entry name" value="MGlyc_endo_b_GlcNAc-like_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01832">
        <property type="entry name" value="Glucosaminidase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF10135">
        <property type="entry name" value="Rod-binding"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00047">
        <property type="entry name" value="LYZ2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR02541">
        <property type="entry name" value="flagell_FlgJ"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="10" id="KW-0966">Cell projection</keyword>
    <keyword evidence="10" id="KW-0969">Cilium</keyword>
    <keyword evidence="10" id="KW-0282">Flagellum</keyword>
    <keyword evidence="7" id="KW-0326">Glycosidase</keyword>
    <keyword evidence="7" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="6" id="KW-0574">Periplasm</keyword>
    <keyword evidence="11" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="LYZ2" evidence="9">
        <location>
            <begin position="158"/>
            <end position="319"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00002954"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00004418"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00006880"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00007974"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00013433"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022764"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023295"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00030835"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="9">
        <source>
            <dbReference type="SMART" id="SM00047"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="EMBL" id="ABX33271.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="320" mass="33577" checksum="E3108134ABBEE3C3" modified="2008-01-15" version="1">MSIALPNGSQTAASNALAADARSLNALKFAAGENSPQAAKETAKQLESLFMREMIKSMREATMKSGLLDSAQGNLSTDMLDQQLSVAMSGQPGGLSDAITRQLARTMGSEAAEDAEISVPSTLSMSRIAWRSTAGSANGTTGAWSGSRSSAAQSVNAYAPAPKGRDNFVAHHGDAAARVAQESGIPAAFMLGQAGHETGWGKSEIKNANGSNAHNLFGIKAGKGWTGKVAEVTTTEYIDGVARKVTAKFRAYDSYEESFRDYARLITSNPRYEKAMGKTDSALAYATELQKAGYATDPEYASKLSRAIQSAVQSAARAQA</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="83" xmlns="http://uniprot.org/uniprot">
    <accession>A9BQ58</accession>
    <name>A9BQ58_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="5">Flagellar L-ring protein</fullName>
        </recommendedName>
        <alternativeName>
            <fullName evidence="5">Basal body L-ring protein</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="5" type="primary">flgH</name>
        <name evidence="7" type="ordered locus">Daci_0627</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="8" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="1 5">Assembles around the rod to form the L-ring and probably protects the motor/basal body from shearing forces during rotation.</text>
    </comment>
    <comment type="subunit">
        <text evidence="5">The basal body constitutes a major portion of the flagellar organelle and consists of four rings (L,P,S, and M) mounted on a central rod.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="5">Cell outer membrane</location>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="5">Bacterial flagellum basal body</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2 5">Belongs to the FlgH family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX33273.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012202559.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_0627"/>
    <dbReference type="PRIDE" id="A9BQ58"/>
    <dbReference type="EnsemblBacteria" id="ABX33273">
        <property type="protein sequence ID" value="ABX33273"/>
        <property type="gene ID" value="Daci_0627"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_0627"/>
    <dbReference type="eggNOG" id="COG2063">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_069313_0_0_4"/>
    <dbReference type="OMA" id="ITQQPMT"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009427">
        <property type="term" value="C:bacterial-type flagellum basal body, distal rod, L ring"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009279">
        <property type="term" value="C:cell outer membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003774">
        <property type="term" value="F:cytoskeletal motor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0071973">
        <property type="term" value="P:bacterial-type flagellum-dependent cell motility"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00415">
        <property type="entry name" value="FlgH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000527">
        <property type="entry name" value="Flag_Lring"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR34933">
        <property type="entry name" value="PTHR34933"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02107">
        <property type="entry name" value="FlgH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR01008">
        <property type="entry name" value="FLGLRINGFLGH"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4 5" id="KW-0975">Bacterial flagellum</keyword>
    <keyword evidence="5" id="KW-0998">Cell outer membrane</keyword>
    <keyword evidence="7" id="KW-0966">Cell projection</keyword>
    <keyword evidence="7" id="KW-0969">Cilium</keyword>
    <keyword evidence="7" id="KW-0282">Flagellum</keyword>
    <keyword evidence="5" id="KW-0472">Membrane</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 6" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="6">
        <location>
            <begin position="1"/>
            <end position="18"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5008947659" description="Flagellar L-ring protein" evidence="6">
        <location>
            <begin position="19"/>
            <end position="235"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00002591"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00006929"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022729"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023143"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00415"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="ABX33273.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="235" mass="24607" checksum="FAF9D4EDB45B30F6" modified="2008-01-15" version="1">MTQRTFSLSATGTCLALAAVLSGCTTLNDPPPVDMPSTAPPVLPQPAPVAGSPTGSLFNAASYRPGFENRRARLVGDLVTVQIVERVTASQKSDSGLKRSNKTTAGISALPLFSGNALANLKDRSNIGFNNNNDYTGSGSTSSDNTFTGAISTTVVDVLPNGHLVIAGEKQIGVNHNVDVLRFTGTVDPRTMQPGSLVASTQVANVRVESRSRGQAGEAQSIGWLSRFFLNVMPF</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="60" xmlns="http://uniprot.org/uniprot">
    <accession>A9BQ62</accession>
    <name>A9BQ62_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="2 5">Basal-body rod modification protein FlgD</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="8" type="ordered locus">Daci_0631</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="9" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="4 5">Required for flagellar hook formation. May act as a scaffolding protein.</text>
    </comment>
    <comment type="similarity">
        <text evidence="1 5">Belongs to the FlgD family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX33277.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012202563.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_0631"/>
    <dbReference type="PRIDE" id="A9BQ62"/>
    <dbReference type="EnsemblBacteria" id="ABX33277">
        <property type="protein sequence ID" value="ABX33277"/>
        <property type="gene ID" value="Daci_0631"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_0631"/>
    <dbReference type="eggNOG" id="COG1843">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_047535_0_0_4"/>
    <dbReference type="OMA" id="PMNPLDN"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0044781">
        <property type="term" value="P:bacterial-type flagellum organization"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005648">
        <property type="entry name" value="FlgD"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025965">
        <property type="entry name" value="FlgD_Ig"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025963">
        <property type="entry name" value="FLgD_Tudor"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03963">
        <property type="entry name" value="FlgD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13860">
        <property type="entry name" value="FlgD_ig"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13861">
        <property type="entry name" value="FLgD_tudor"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3 5" id="KW-1005">Bacterial flagellum biogenesis</keyword>
    <keyword evidence="8" id="KW-0966">Cell projection</keyword>
    <keyword evidence="8" id="KW-0969">Cilium</keyword>
    <keyword evidence="8" id="KW-0282">Flagellum</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="FLgD_tudor" evidence="7">
        <location>
            <begin position="86"/>
            <end position="217"/>
        </location>
    </feature>
    <feature type="domain" description="FlgD_ig" evidence="6">
        <location>
            <begin position="109"/>
            <end position="177"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00010577"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00016013"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022795"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00024746"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="RuleBase" id="RU362076"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="Pfam" id="PF13860"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="Pfam" id="PF13861"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="ABX33277.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="220" mass="23068" checksum="22C2DD7D8FFDE436" modified="2008-01-15" version="1">MIYGAGSVASTADINNKSATSNSTTDPAAAQDRFLKLLVAQLNNQDPMNPMDNAQMTSQMAQINTVTGIQQLNKTMESMAGQFTAMQVLQGTQMIGRTVLTEGNTLGVGKEKSYTAAFDLEGPAADVKVQITTASGELVDTVELGSGTAGRNYFTWDGSKYTGDASQLRYTVQATNADTVVASTTLSPHAVLATGTTDGKLTLELDDGTNVAYASVKAVY</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="76" xmlns="http://uniprot.org/uniprot">
    <accession>A9BQ79</accession>
    <name>A9BQ79_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="3 12">Flagellar biosynthetic protein FliP</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="12" type="primary">fliP</name>
        <name evidence="14" type="ordered locus">Daci_0648</name>
    </gene>
    <organism evidence="14 15">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="14 15" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="15">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="15" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="15">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="12">Plays a role in the flagellum-specific transport system.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="12">Cell membrane</location>
            <topology evidence="12">Multi-pass membrane protein</topology>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="12">Bacterial flagellum basal body</location>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2 12">Belongs to the FliP/MopC/SpaP family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX33294.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012202580.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_0648"/>
    <dbReference type="PRIDE" id="A9BQ79"/>
    <dbReference type="EnsemblBacteria" id="ABX33294">
        <property type="protein sequence ID" value="ABX33294"/>
        <property type="gene ID" value="Daci_0648"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_0648"/>
    <dbReference type="eggNOG" id="COG1338">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_042028_0_1_4"/>
    <dbReference type="OMA" id="MPPNQIL"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009425">
        <property type="term" value="C:bacterial-type flagellum basal body"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016787">
        <property type="term" value="F:hydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0044781">
        <property type="term" value="P:bacterial-type flagellum organization"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009306">
        <property type="term" value="P:protein secretion"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005837">
        <property type="entry name" value="FliP"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005838">
        <property type="entry name" value="T3SS_IM_P"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30587">
        <property type="entry name" value="PTHR30587"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30587:SF0">
        <property type="entry name" value="PTHR30587:SF0"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00813">
        <property type="entry name" value="FliP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00951">
        <property type="entry name" value="FLGBIOSNFLIP"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR01302">
        <property type="entry name" value="TYPE3IMPPROT"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01103">
        <property type="entry name" value="fliP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01060">
        <property type="entry name" value="FLIP_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01061">
        <property type="entry name" value="FLIP_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="10" id="KW-0975">Bacterial flagellum</keyword>
    <keyword evidence="7 12" id="KW-1005">Bacterial flagellum biogenesis</keyword>
    <keyword evidence="11 12" id="KW-1006">Bacterial flagellum protein export</keyword>
    <keyword evidence="5 12" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="14" id="KW-0966">Cell projection</keyword>
    <keyword evidence="14" id="KW-0969">Cilium</keyword>
    <keyword evidence="14" id="KW-0282">Flagellum</keyword>
    <keyword evidence="14" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="9 12" id="KW-0472">Membrane</keyword>
    <keyword evidence="12" id="KW-0653">Protein transport</keyword>
    <keyword evidence="15" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="13" id="KW-0732">Signal</keyword>
    <keyword evidence="6 12" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="8 12" id="KW-1133">Transmembrane helix</keyword>
    <keyword evidence="4 12" id="KW-0813">Transport</keyword>
    <feature type="signal peptide" evidence="13">
        <location>
            <begin position="1"/>
            <end position="34"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5002734970" description="Flagellar biosynthetic protein FliP" evidence="13">
        <location>
            <begin position="35"/>
            <end position="261"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="12">
        <location>
            <begin position="60"/>
            <end position="90"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="12">
        <location>
            <begin position="102"/>
            <end position="121"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="12">
        <location>
            <begin position="201"/>
            <end position="227"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="12">
        <location>
            <begin position="239"/>
            <end position="260"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00006257"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00021714"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022448"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022795"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00023143"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="ARBA" id="ARBA00023225"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="12">
        <source>
            <dbReference type="RuleBase" id="RU362069"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="13">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="14">
        <source>
            <dbReference type="EMBL" id="ABX33294.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="15">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="261" mass="28018" checksum="B2FE2800A9D401C4" modified="2008-01-15" version="1">MSEYSCKRPARTLSQAAGAAALALCCATPLASWAQGAPASLPLVIGQGSGGTSFSVPIQTLLFFTALSFLPAILLMMTGFTRIVIVLSLMRQALGTQSAPPNQVIIGLSLFLTLFVMGPTLDRVYQEAYVPYTTNAVTFEQAIEKAEAPMRDFMLKQTRQSDFALFARLAKLDAGVTSETAPLRVLVPAFVTSELKTAFQIGFMIFIPFLVIDMVVSSILMSLGMMMLSPVLVALPFKLMLFVLADGWNLLIGSLAASFAV</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="59" xmlns="http://uniprot.org/uniprot">
    <accession>A9BQE2</accession>
    <name>A9BQE2_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ordered locus">Daci_0906</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="5" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Periplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the UPF0065 (bug) family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX33552.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012202838.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_0906"/>
    <dbReference type="PRIDE" id="A9BQE2"/>
    <dbReference type="EnsemblBacteria" id="ABX33552">
        <property type="protein sequence ID" value="ABX33552"/>
        <property type="gene ID" value="Daci_0906"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_0906"/>
    <dbReference type="eggNOG" id="COG3181">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_045683_0_2_4"/>
    <dbReference type="OMA" id="ATVWWGL"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0042597">
        <property type="term" value="C:periplasmic space"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.190.150">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005064">
        <property type="entry name" value="BUG"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR042100">
        <property type="entry name" value="Bug_dom1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006311">
        <property type="entry name" value="TAT_signal"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR42928">
        <property type="entry name" value="PTHR42928"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03401">
        <property type="entry name" value="TctC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF017082">
        <property type="entry name" value="YflP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51318">
        <property type="entry name" value="TAT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="3">
        <location>
            <begin position="1"/>
            <end position="30"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5002735682" evidence="3">
        <location>
            <begin position="31"/>
            <end position="328"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004418"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00006987"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="ABX33552.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="328" mass="33171" checksum="9905AC3BAF33417E" modified="2008-01-15" version="1">MTRHSTRRHALALLGTTAAAWAALPLVATAAGYPERPVTVVVPYSPGGGVDIITRLVTPPMAELLGQSLVVDNKPGGGTNIGMGAVARGAADGYLLLTASNTLTTNKALYAKLNFDPLKDLIPVGRIGEAPLVVVVNAKSPHKNLAELIAAGKAKAGALSYGTAGVGSSGHMASALLERAGGFQAVHIPYKGGSAAVTDLLGGRLDFMAINPLEVAGHVGSGALRALAVLNHNGSRLLPGVPTARSLGVNVQATVWWGLVAPAGTPPAVVQALNQALNKSLAQPAVQQKLADIGASPMGGTPAEFGAFIQAESAELGEVIRAANIRAD</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="70" xmlns="http://uniprot.org/uniprot">
    <accession>A9BQL0</accession>
    <name>A9BQL0_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Putative signal transduction protein with EFhand domain</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ordered locus">Daci_0065</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="5" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX32712.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012202005.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_0065"/>
    <dbReference type="PRIDE" id="A9BQL0"/>
    <dbReference type="EnsemblBacteria" id="ABX32712">
        <property type="protein sequence ID" value="ABX32712"/>
        <property type="gene ID" value="Daci_0065"/>
    </dbReference>
    <dbReference type="GeneID" id="60690470"/>
    <dbReference type="KEGG" id="dac:Daci_0065"/>
    <dbReference type="eggNOG" id="ENOG503319H">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_2104992_0_0_4"/>
    <dbReference type="OMA" id="FEIRSVM"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005509">
        <property type="term" value="F:calcium ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd00051">
        <property type="entry name" value="EFh"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011992">
        <property type="entry name" value="EF-hand-dom_pair"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018247">
        <property type="entry name" value="EF_Hand_1_Ca_BS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002048">
        <property type="entry name" value="EF_hand_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13202">
        <property type="entry name" value="EF-hand_5"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47473">
        <property type="entry name" value="SSF47473"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00018">
        <property type="entry name" value="EF_HAND_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50222">
        <property type="entry name" value="EF_HAND_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="2">
        <location>
            <begin position="1"/>
            <end position="31"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5002734981" evidence="2">
        <location>
            <begin position="32"/>
            <end position="122"/>
        </location>
    </feature>
    <feature type="domain" description="EF-hand" evidence="3">
        <location>
            <begin position="99"/>
            <end position="122"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="30"/>
            <end position="122"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="30"/>
            <end position="67"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="74"/>
            <end position="88"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="PROSITE" id="PS50222"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="ABX32712.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="122" mass="12401" checksum="EFB022B0F9E12375" modified="2008-01-15" version="1">MTSQLRKVSGFEIRSVMLFAAISLGSVAAMAQTSTPAAPPSQASFGAGSGPATGVQAAPTPSSAGANDVQAAFDRADTNRDGKLSKKEAEALPAVSSNFAQIDADKNGSLSRDEFSKAVQPR</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="66" xmlns="http://uniprot.org/uniprot">
    <accession>A9BQM1</accession>
    <name>A9BQM1_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Benzoate-CoA ligase family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ordered locus">Daci_0076</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="5" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX32723.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012202016.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_0076"/>
    <dbReference type="PRIDE" id="A9BQM1"/>
    <dbReference type="EnsemblBacteria" id="ABX32723">
        <property type="protein sequence ID" value="ABX32723"/>
        <property type="gene ID" value="Daci_0076"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_0076"/>
    <dbReference type="eggNOG" id="COG0365">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_000022_59_10_4"/>
    <dbReference type="OMA" id="PLRDYNA"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016405">
        <property type="term" value="F:CoA-ligase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.300.30">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025110">
        <property type="entry name" value="AMP-bd_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045851">
        <property type="entry name" value="AMP-bd_C_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000873">
        <property type="entry name" value="AMP-dep_Synth/Lig"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011957">
        <property type="entry name" value="Benz_CoA_lig"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00501">
        <property type="entry name" value="AMP-binding"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13193">
        <property type="entry name" value="AMP-binding_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR02262">
        <property type="entry name" value="benz_CoA_lig"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-0436">Ligase</keyword>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="71"/>
            <end position="92"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="221"/>
            <end position="243"/>
        </location>
    </feature>
    <feature type="domain" description="AMP-binding" evidence="2">
        <location>
            <begin position="19"/>
            <end position="421"/>
        </location>
    </feature>
    <feature type="domain" description="AMP-binding_C" evidence="3">
        <location>
            <begin position="429"/>
            <end position="504"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF00501"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF13193"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="ABX32723.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="518" mass="56212" checksum="58DAA07D7D7923C0" modified="2008-01-15" version="1"> </sequence>
</entry>
<entry dataset="Swiss-Prot" created="2009-04-14" modified="2022-08-03" version="68" xmlns="http://uniprot.org/uniprot">
    <accession>A9BQU2</accession>
    <name>KDGD_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Probable 5-dehydro-4-deoxyglucarate dehydratase</fullName>
            <ecNumber evidence="1">4.2.1.41</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="1">5-keto-4-deoxy-glucarate dehydratase</fullName>
            <shortName evidence="1">KDGDH</shortName>
        </alternativeName>
    </protein>
    <gene>
        <name type="ordered locus">Daci_0251</name>
    </gene>
    <organism>
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference key="1">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain>DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>5-dehydro-4-deoxy-D-glucarate + H(+) = 2,5-dioxopentanoate + CO2 + H2O</text>
            <dbReference type="Rhea" id="RHEA:24608"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:16526"/>
            <dbReference type="ChEBI" id="CHEBI:42819"/>
            <dbReference type="ChEBI" id="CHEBI:58136"/>
            <dbReference type="EC" id="4.2.1.41"/>
        </reaction>
    </comment>
    <comment type="pathway">
        <text evidence="1">Carbohydrate acid metabolism; D-glucarate degradation; 2,5-dioxopentanoate from D-glucarate: step 2/2.</text>
    </comment>
    <comment type="similarity">
        <text evidence="1">Belongs to the DapA family.</text>
    </comment>
    <dbReference type="EC" id="4.2.1.41" evidence="1"/>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX32897.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012202190.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A9BQU2"/>
    <dbReference type="SMR" id="A9BQU2"/>
    <dbReference type="STRING" id="398578.Daci_0251"/>
    <dbReference type="PRIDE" id="A9BQU2"/>
    <dbReference type="EnsemblBacteria" id="ABX32897">
        <property type="protein sequence ID" value="ABX32897"/>
        <property type="gene ID" value="Daci_0251"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_0251"/>
    <dbReference type="eggNOG" id="COG0329">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_049343_5_2_4"/>
    <dbReference type="OMA" id="EFHALTP"/>
    <dbReference type="UniPathway" id="UPA00564">
        <property type="reaction ID" value="UER00628"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0047448">
        <property type="term" value="F:5-dehydro-4-deoxyglucarate dehydratase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0042838">
        <property type="term" value="P:D-glucarate catabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniPathway"/>
    </dbReference>
    <dbReference type="CDD" id="cd00951">
        <property type="entry name" value="KDGDH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.20.20.70">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00694">
        <property type="entry name" value="KDGDH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013785">
        <property type="entry name" value="Aldolase_TIM"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002220">
        <property type="entry name" value="DapA-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017655">
        <property type="entry name" value="Dehydro-deoxyglucarate_dehyd"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR12128">
        <property type="entry name" value="PTHR12128"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00701">
        <property type="entry name" value="DHDPS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF001365">
        <property type="entry name" value="DHDPS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00146">
        <property type="entry name" value="DHPICSNTHASE"/>
    </dbReference>
    <dbReference type="SMART" id="SM01130">
        <property type="entry name" value="DHDPS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR03249">
        <property type="entry name" value="KdgD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword id="KW-0456">Lyase</keyword>
    <keyword id="KW-1185">Reference proteome</keyword>
    <feature type="chain" id="PRO_1000132269" description="Probable 5-dehydro-4-deoxyglucarate dehydratase">
        <location>
            <begin position="1"/>
            <end position="303"/>
        </location>
    </feature>
    <evidence type="ECO:0000255" key="1">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00694"/>
        </source>
    </evidence>
    <sequence length="303" mass="32772" checksum="76961EF251431211" modified="2008-01-15" version="1">MTPQDLKDVMSSGLLSFPVTDFDSNGNFNAKGYAARLEWLAPYGASALFAAGGTGEYFSLYGEEYGQIIKTAVDTCRGKVPIIAGAGGPTRTAIAHAQEAERLGAHGVLLLPHYLTEAGQEGLIAHVEQVCKSVKFGVIVYNRDRTRFTPESLAILAERCPNLVGFKDGMGNIETMSAIFMKMGDRFAYLGGLPTAEVYAAAYKALGTPVYSSAVFNFIPKTAMAFYEAVRTDDMATQHKLLKEFFMPYLKIRNRVEGYGVSIIKAGAKLVGHDAGPVRAPLTDLKPSELEELKALIDKLGPQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="77" xmlns="http://uniprot.org/uniprot">
    <accession>A9BQY5</accession>
    <name>A9BQY5_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Transcriptional regulator, MarR family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Daci_0294</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="4" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX32940.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012202233.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_0294"/>
    <dbReference type="PRIDE" id="A9BQY5"/>
    <dbReference type="EnsemblBacteria" id="ABX32940">
        <property type="protein sequence ID" value="ABX32940"/>
        <property type="gene ID" value="Daci_0294"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_0294"/>
    <dbReference type="eggNOG" id="COG1846">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_083287_8_0_4"/>
    <dbReference type="OMA" id="RREWRMI"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003700">
        <property type="term" value="F:DNA-binding transcription factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000835">
        <property type="entry name" value="HTH_MarR-typ"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036390">
        <property type="entry name" value="WH_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01047">
        <property type="entry name" value="MarR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00598">
        <property type="entry name" value="HTHMARR"/>
    </dbReference>
    <dbReference type="SMART" id="SM00347">
        <property type="entry name" value="HTH_MARR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46785">
        <property type="entry name" value="SSF46785"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50995">
        <property type="entry name" value="HTH_MARR_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HTH marR-type" evidence="2">
        <location>
            <begin position="14"/>
            <end position="147"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="148"/>
            <end position="171"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS50995"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ABX32940.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="171" mass="19292" checksum="40FB7595BD3D51A2" modified="2008-01-15" version="1">MTDLHRWRHPAVLDDMFLYHLARLQAAAGSRVVRLCEGRYGITRREWRMLCLLAEAGQLQPSQLAEQAQLDRTRTSRAVTALLAKGLLWKESQVGDARRALLRLSDTGRALHAELFPQVQAINRELMDAVPEPELQAMASAFARIRTRARELEASSPPPKAPRNRRKPAAP</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="62" xmlns="http://uniprot.org/uniprot">
    <accession>A9BQY7</accession>
    <name>A9BQY7_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Sulfatase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ordered locus">Daci_0296</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="6" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="PTM">
        <text evidence="3">The conversion to 3-oxoalanine (also known as C-formylglycine, FGly), of a serine or cysteine residue in prokaryotes and of a cysteine residue in eukaryotes, is critical for catalytic activity.</text>
    </comment>
    <comment type="similarity">
        <text evidence="1">Belongs to the sulfatase family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX32942.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012202235.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_0296"/>
    <dbReference type="PRIDE" id="A9BQY7"/>
    <dbReference type="EnsemblBacteria" id="ABX32942">
        <property type="protein sequence ID" value="ABX32942"/>
        <property type="gene ID" value="Daci_0296"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_0296"/>
    <dbReference type="eggNOG" id="COG3119">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_006332_10_4_4"/>
    <dbReference type="OMA" id="CDPAATG"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008484">
        <property type="term" value="F:sulfuric ester hydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.720.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017850">
        <property type="entry name" value="Alkaline_phosphatase_core_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR024607">
        <property type="entry name" value="Sulfatase_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000917">
        <property type="entry name" value="Sulfatase_N"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00884">
        <property type="entry name" value="Sulfatase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53649">
        <property type="entry name" value="SSF53649"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00149">
        <property type="entry name" value="SULFATASE_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Sulfatase" evidence="4">
        <location>
            <begin position="6"/>
            <end position="328"/>
        </location>
    </feature>
    <feature type="modified residue" description="3-oxoalanine (Cys)" evidence="3">
        <location>
            <position position="60"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00008779"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="PIRSR" id="PIRSR600917-51"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="Pfam" id="PF00884"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="ABX32942.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="442" mass="49749" checksum="A8616D55CD7C07A0" modified="2008-01-15" version="1">MATQRPNLIFILADDLGYADLGCTGARDAHSRATDVSPRLDAMAAQGMRFTRGYSNSAVCSPTRFALATGRWQYRLRGAAEEPIASVHGDKVLGLPPDHPTVASLLRDAGYATALVGKWHLGYPPHFGPRMSGYEEFYGFHAGGADYFAHCDPRGRPDFWINEEPHEEEGYLTDLLSRRAVDFVERQTADKPFYLSLHYSAPHWPWLTRDDLEESRRIGGFGKHTDGGTIETYQRMIHHMDEGIGWVLDALEKKGMAENTLIVFTSDNGGERFSNNWPFIGQKMDLLEGGIRVPLVARWPDRMPAGAVSDTPNLTMDWSATFLAAAGVHGHADYPLDGISLLPLMDDGAWNPERDLCWRMKHRAQRALVRGDWKYLQIEGVEYLFNVAQDPRERANLRDREPQRLAELRAAWQQWDASLPPIPEEAKVSLVFSRQDLPSATF</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="70" xmlns="http://uniprot.org/uniprot">
    <accession>A9BR33</accession>
    <name>A9BR33_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ordered locus">Daci_0342</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="6" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>pyrroloquinoline quinone</name>
            <dbReference type="ChEBI" id="CHEBI:58442"/>
        </cofactor>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the bacterial PQQ dehydrogenase family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX32988.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012202281.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_0342"/>
    <dbReference type="PRIDE" id="A9BR33"/>
    <dbReference type="EnsemblBacteria" id="ABX32988">
        <property type="protein sequence ID" value="ABX32988"/>
        <property type="gene ID" value="Daci_0342"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_0342"/>
    <dbReference type="eggNOG" id="COG4993">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_018478_1_0_4"/>
    <dbReference type="OMA" id="LVWNWDS"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016614">
        <property type="term" value="F:oxidoreductase activity, acting on CH-OH group of donors"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0048038">
        <property type="term" value="F:quinone binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd10280">
        <property type="entry name" value="PQQ_mGDH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018391">
        <property type="entry name" value="PQQ_beta_propeller_repeat"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017511">
        <property type="entry name" value="PQQ_mDH"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002372">
        <property type="entry name" value="PQQ_repeat"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011047">
        <property type="entry name" value="Quinoprotein_ADH-like_supfam"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR32303:SF4">
        <property type="entry name" value="PTHR32303:SF4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01011">
        <property type="entry name" value="PQQ"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13360">
        <property type="entry name" value="PQQ_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00564">
        <property type="entry name" value="PQQ"/>
        <property type="match status" value="4"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50998">
        <property type="entry name" value="SSF50998"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR03074">
        <property type="entry name" value="PQQ_membr_DH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-0472">Membrane</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="4" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="4">
        <location>
            <begin position="32"/>
            <end position="50"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="4">
        <location>
            <begin position="57"/>
            <end position="75"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="4">
        <location>
            <begin position="87"/>
            <end position="105"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="4">
        <location>
            <begin position="117"/>
            <end position="139"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="3">
        <location>
            <begin position="591"/>
            <end position="613"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001931"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00008156"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="ABX32988.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="868" mass="92444" checksum="325CF183CCCC9AA1" modified="2008-01-15" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2021-06-02" version="36" xmlns="http://uniprot.org/uniprot">
    <accession>A9BRB2</accession>
    <name>A9BRB2_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_0524</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX33170.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012202456.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_0524"/>
    <dbReference type="EnsemblBacteria" id="ABX33170">
        <property type="protein sequence ID" value="ABX33170"/>
        <property type="gene ID" value="Daci_0524"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_0524"/>
    <dbReference type="eggNOG" id="ENOG502ZJKH">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_2011525_0_0_4"/>
    <dbReference type="OMA" id="SGWERLC"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="94"/>
            <end position="119"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX33170.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="119" mass="12138" checksum="DB12690893B16BE5" modified="2008-01-15" version="1">MPLRLPSTLAACARWVLGLWLCVALASAFAPLARASGWERLCSAAGESVWVPSPAGQDNALAGSHGIDCPLCLPPLAPPPARCSAAPAPLMADAPPRAHPASVHSVAMPALPQARAPPR</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="76" xmlns="http://uniprot.org/uniprot">
    <accession>A9BRD6</accession>
    <name>A9BRD6_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Transcriptional regulator, LysR family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Daci_0548</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="4" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the LysR transcriptional regulatory family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX33194.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012202480.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_0548"/>
    <dbReference type="PRIDE" id="A9BRD6"/>
    <dbReference type="EnsemblBacteria" id="ABX33194">
        <property type="protein sequence ID" value="ABX33194"/>
        <property type="gene ID" value="Daci_0548"/>
    </dbReference>
    <dbReference type="GeneID" id="60690891"/>
    <dbReference type="KEGG" id="dac:Daci_0548"/>
    <dbReference type="eggNOG" id="COG0583">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_039613_6_0_4"/>
    <dbReference type="OMA" id="DICCGVQ"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003700">
        <property type="term" value="F:DNA-binding transcription factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005119">
        <property type="entry name" value="LysR_subst-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000847">
        <property type="entry name" value="Tscrpt_reg_HTH_LysR"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036390">
        <property type="entry name" value="WH_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00126">
        <property type="entry name" value="HTH_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03466">
        <property type="entry name" value="LysR_substrate"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46785">
        <property type="entry name" value="SSF46785"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50931">
        <property type="entry name" value="HTH_LYSR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HTH lysR-type" evidence="2">
        <location>
            <begin position="1"/>
            <end position="60"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00009437"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS50931"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ABX33194.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="316" mass="34579" checksum="0EA276D9D047CF8D" modified="2008-01-15" version="1">MPAISQAFRCFDEVARRGSVRKAAVTLHLTAAAVNQQILNLEAQVGVPLFDRLPRGMQLTTAGELMLAAVRRSQRDFDNALAQVEDLRALRRGHVRVGVSHATAEYLLPLVIASLHGRYPGITFSVRSGTGEELLRGVAQGEIDVAYCLRRPPPPGVQEVRAWPQPLGAVMAPGHPLATEPRLLRLRDCVDYPLILMAPGMELRSMLEQMDSAALHQQRPLVETSSVPMVRRLVAGSTALGFLVPDNVAEDVAAGRLLWRPLHDAGAQLPGCLYQRIGYTKAAAMRLFLDELERVADEMRAGFETGVSWSLKDLAT</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="60" xmlns="http://uniprot.org/uniprot">
    <accession>A9BRT4</accession>
    <name>A9BRT4_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Periplasmic binding protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_1005</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX33651.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_1005"/>
    <dbReference type="PRIDE" id="A9BRT4"/>
    <dbReference type="EnsemblBacteria" id="ABX33651">
        <property type="protein sequence ID" value="ABX33651"/>
        <property type="gene ID" value="Daci_1005"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_1005"/>
    <dbReference type="eggNOG" id="COG4607">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_038034_3_1_4"/>
    <dbReference type="OMA" id="KMSAFGP"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006826">
        <property type="term" value="P:iron ion transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd01140">
        <property type="entry name" value="FatB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002491">
        <property type="entry name" value="ABC_transptr_periplasmic_BD"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR033870">
        <property type="entry name" value="FatB"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01497">
        <property type="entry name" value="Peripla_BP_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50983">
        <property type="entry name" value="FE_B12_PBP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Fe/B12 periplasmic-binding" evidence="1">
        <location>
            <begin position="80"/>
            <end position="341"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS50983"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX33651.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="341" mass="36942" checksum="87609EF8F230CB34" modified="2008-01-15" version="1">MPQKPMFELPGNTAITVKMNTMNANHSRRRILAKMGQGLGVLVTLPLAAQMSHAQTAAAGKTVTVPHAKGEVQVPFKPVRVLVFELAALDTLQALGGEVRGVPEFKMPPLLARYADAKYARIGSLFEPDYESIKALSPDLIIVGGRSEAKYKELSRFAPVLDLSVSDQHQMADIYRNIRTLGAVYGLQDKAEAEVRSVEQAITALHGKAQDAGKGLVLLTSGGKLSAYGPGSRFGMLHDVFGVKPAIDNLTVARHGQVVSFEFLLKTNPDWLFVIDRDVAIGQDGKTAQQLLDNPLVRATKAWRGKQVVYLNAANWYTLSNAGPGALKANIQQLSDAFTRT</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="78" xmlns="http://uniprot.org/uniprot">
    <accession>A9BRX1</accession>
    <name>A9BRX1_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="9 10">Protein translocase subunit SecY</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="9" type="primary">secY</name>
        <name evidence="13" type="ordered locus">Daci_1042</name>
    </gene>
    <organism evidence="13 14">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="13 14" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="14">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="14" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="14">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="9 10">The central subunit of the protein translocation channel SecYEG. Consists of two halves formed by TMs 1-5 and 6-10. These two domains form a lateral gate at the front which open onto the bilayer between TMs 2 and 7, and are clamped together by SecE at the back. The channel is closed by both a pore ring composed of hydrophobic SecY resides and a short helix (helix 2A) on the extracellular side of the membrane which forms a plug. The plug probably moves laterally to allow the channel to open. The ring and the pore may move independently.</text>
    </comment>
    <comment type="subunit">
        <text evidence="9">Component of the Sec protein translocase complex. Heterotrimer consisting of SecY, SecE and SecG subunits. The heterotrimers can form oligomers, although 1 heterotrimer is thought to be able to translocate proteins. Interacts with the ribosome. Interacts with SecDF, and other proteins may be involved. Interacts with SecA.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="9">Cell inner membrane</location>
            <topology evidence="9">Multi-pass membrane protein</topology>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="1 11">Membrane</location>
            <topology evidence="1 11">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2 9 12">Belongs to the SecY/SEC61-alpha family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX33688.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012202974.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_1042"/>
    <dbReference type="PRIDE" id="A9BRX1"/>
    <dbReference type="EnsemblBacteria" id="ABX33688">
        <property type="protein sequence ID" value="ABX33688"/>
        <property type="gene ID" value="Daci_1042"/>
    </dbReference>
    <dbReference type="GeneID" id="60685604"/>
    <dbReference type="KEGG" id="dac:Daci_1042"/>
    <dbReference type="eggNOG" id="COG0201">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_030313_0_2_4"/>
    <dbReference type="OMA" id="FAMWLGE"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0065002">
        <property type="term" value="P:intracellular protein transmembrane transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006605">
        <property type="term" value="P:protein targeting"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043952">
        <property type="term" value="P:protein transport by the Sec complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.3370.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01465">
        <property type="entry name" value="SecY"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR026593">
        <property type="entry name" value="SecY"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002208">
        <property type="entry name" value="SecY/SEC61-alpha"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR030659">
        <property type="entry name" value="SecY_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023201">
        <property type="entry name" value="SecY_dom_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10906">
        <property type="entry name" value="PTHR10906"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00344">
        <property type="entry name" value="SecY"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF004557">
        <property type="entry name" value="SecY"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF103491">
        <property type="entry name" value="SSF103491"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00967">
        <property type="entry name" value="3a0501s007"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00755">
        <property type="entry name" value="SECY_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00756">
        <property type="entry name" value="SECY_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="9" id="KW-0997">Cell inner membrane</keyword>
    <keyword evidence="9" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="8 9" id="KW-0472">Membrane</keyword>
    <keyword evidence="5 9 11" id="KW-0653">Protein transport</keyword>
    <keyword evidence="14" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="7 9 11" id="KW-0811">Translocation</keyword>
    <keyword evidence="4 9 11" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="6 9" id="KW-1133">Transmembrane helix</keyword>
    <keyword evidence="3 9 11" id="KW-0813">Transport</keyword>
    <feature type="transmembrane region" description="Helical" evidence="9">
        <location>
            <begin position="21"/>
            <end position="39"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="9">
        <location>
            <begin position="73"/>
            <end position="97"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="9">
        <location>
            <begin position="117"/>
            <end position="137"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="9">
        <location>
            <begin position="149"/>
            <end position="169"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="9">
        <location>
            <begin position="181"/>
            <end position="202"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="9">
        <location>
            <begin position="208"/>
            <end position="230"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="9">
        <location>
            <begin position="269"/>
            <end position="291"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="9">
        <location>
            <begin position="311"/>
            <end position="332"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="9">
        <location>
            <begin position="364"/>
            <end position="388"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="9">
        <location>
            <begin position="394"/>
            <end position="413"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00005751"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022448"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022927"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023010"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01465"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="RuleBase" id="RU000537"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="RuleBase" id="RU003484"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="12">
        <source>
            <dbReference type="RuleBase" id="RU004349"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="13">
        <source>
            <dbReference type="EMBL" id="ABX33688.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="14">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="439" mass="47825" checksum="A898128B93F4D719" modified="2008-01-15" version="1">MATSAAQIAKTGKFGDLRRRLVFLLLALVVYRIGAHIPVPGIDPAQLQQLFNGQQGGILNLFNMFSGGALSRFTVFALGIMPYISASIIMQLMTYVVPTFEQLKKEGESGRRKITQYTRYGTLGLAIFQSLGIAVALESSAGLVLSPGFGFRLTAVVSLTAGTMFLMWLGEQITERGLGNGISILIFGGIAAGLPSSIGGLLELVRTGAMSILAAIFIVLVVAAVTYFVVFVERGQRKILVNYARRQVGNKVYGGQSSHLPLKLNMAGVIPPIFASSIILLPATVVNWFSAGESMRWLKDIASTLTPGQPIYVMLYATAIIFFCFFYTALVFNSRETADNLKKSGAFIPGIRPGDQTARYIDKILVRLTLAGAVYITFVCLLPEFLILKYNVPFYFGGTSLLIIVVVTMDFMAQVQNYMMSQQYESLLKKANFKATLGN</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="71" xmlns="http://uniprot.org/uniprot">
    <accession>A9BS10</accession>
    <name>A9BS10_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="7">Beta-lactamase domain protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ordered locus">Daci_0774</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="8" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="4">Belongs to the metallo-beta-lactamase superfamily. Type III sulfatase family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX33420.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012202706.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_0774"/>
    <dbReference type="PRIDE" id="A9BS10"/>
    <dbReference type="EnsemblBacteria" id="ABX33420">
        <property type="protein sequence ID" value="ABX33420"/>
        <property type="gene ID" value="Daci_0774"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_0774"/>
    <dbReference type="eggNOG" id="COG2015">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_014655_1_0_4"/>
    <dbReference type="OMA" id="NPARLWP"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0018741">
        <property type="term" value="F:alkyl sulfatase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046983">
        <property type="term" value="F:protein dimerization activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0018909">
        <property type="term" value="P:dodecyl sulfate metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd07710">
        <property type="entry name" value="arylsulfatase_Sdsa1-like_MBL-fold"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.25.40.880">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.1050.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038536">
        <property type="entry name" value="Alkyl/aryl-sulf_dimr_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029229">
        <property type="entry name" value="Alkyl_sulf_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029228">
        <property type="entry name" value="Alkyl_sulf_dimr"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR044097">
        <property type="entry name" value="Bds1/SdsA1_MBL-fold"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001279">
        <property type="entry name" value="Metallo-B-lactamas"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036866">
        <property type="entry name" value="RibonucZ/Hydroxyglut_hydro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036527">
        <property type="entry name" value="SCP2_sterol-bd_dom_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF14864">
        <property type="entry name" value="Alkyl_sulf_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF14863">
        <property type="entry name" value="Alkyl_sulf_dimr"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00753">
        <property type="entry name" value="Lactamase_B"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00849">
        <property type="entry name" value="Lactamase_B"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55718">
        <property type="entry name" value="SSF55718"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56281">
        <property type="entry name" value="SSF56281"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="1" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="5" id="KW-0732">Signal</keyword>
    <keyword evidence="3" id="KW-0862">Zinc</keyword>
    <feature type="signal peptide" evidence="5">
        <location>
            <begin position="1"/>
            <end position="24"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5002735980" evidence="5">
        <location>
            <begin position="25"/>
            <end position="677"/>
        </location>
    </feature>
    <feature type="domain" description="Lactamase_B" evidence="6">
        <location>
            <begin position="142"/>
            <end position="364"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022833"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00033751"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="SMART" id="SM00849"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="ABX33420.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="677" mass="74222" checksum="E755C7A84502A30C" modified="2008-01-15" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="60" xmlns="http://uniprot.org/uniprot">
    <accession>A9BS94</accession>
    <name>A9BS94_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Phosphoheptose isomerase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_1063</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX33708.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012202994.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_1063"/>
    <dbReference type="PRIDE" id="A9BS94"/>
    <dbReference type="EnsemblBacteria" id="ABX33708">
        <property type="protein sequence ID" value="ABX33708"/>
        <property type="gene ID" value="Daci_1063"/>
    </dbReference>
    <dbReference type="GeneID" id="60685625"/>
    <dbReference type="KEGG" id="dac:Daci_1063"/>
    <dbReference type="eggNOG" id="COG0279">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_080999_3_1_4"/>
    <dbReference type="OMA" id="DVHICVP"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0097367">
        <property type="term" value="F:carbohydrate derivative binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016853">
        <property type="term" value="F:isomerase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:1901135">
        <property type="term" value="P:carbohydrate derivative metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd05006">
        <property type="entry name" value="SIS_GmhA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035461">
        <property type="entry name" value="GmhA/DiaA"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001347">
        <property type="entry name" value="SIS_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR046348">
        <property type="entry name" value="SIS_dom_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13580">
        <property type="entry name" value="SIS_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53697">
        <property type="entry name" value="SSF53697"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51464">
        <property type="entry name" value="SIS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0413">Isomerase</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="SIS" evidence="1">
        <location>
            <begin position="35"/>
            <end position="200"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS51464"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX33708.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="202" mass="20843" checksum="89A6840A1C29F04B" modified="2008-01-15" version="1">MLEQRIQQHFIDSADLKYQAAQALSQPIAAAVQAMLACVTSGGKVLACGAGASASDAQLFAALCVAGFERDRPELAAVALVSDGGLLGTVGATGSGGNATQYLARQIRALGQPGDLLLVLSATGNDVAVLEALDAAHERDMMAVVLTGRTGGSLAGRVRETDVLICVPHDRAARVRETHTLVLHCLCDGVDAQLLGEQEMPL</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="44" xmlns="http://uniprot.org/uniprot">
    <accession>A9BSB5</accession>
    <name>A9BSB5_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_1084</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX33729.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012203015.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="PRIDE" id="A9BSB5"/>
    <dbReference type="EnsemblBacteria" id="ABX33729">
        <property type="protein sequence ID" value="ABX33729"/>
        <property type="gene ID" value="Daci_1084"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_1084"/>
    <dbReference type="HOGENOM" id="CLU_815648_0_0_4"/>
    <dbReference type="OMA" id="VEYTCER"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="coiled-coil region" evidence="1">
        <location>
            <begin position="221"/>
            <end position="248"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX33729.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="340" mass="38396" checksum="EE267F53352654B4" modified="2008-01-15" version="1">MRWQRVWLLPSSLVLVLGGCGGDDGDVLAVRAASWGGASGVSIGQVLQERNACARSAWRSVGDGSGGRIVEYTCERSGTHGYLQLRLRQDAEQLQQAADGEQARFEARLRGGWRELLMLERQRQEMLGRHRLEAQKDAERMRLHLEDLRMLEEMTDCRSFRPQGLGAEAAPQRLVLAADACVRSGRPAEPVYARERQQTLERMRAALPRYDEARLGREAALRALERTLEQQEAALRRLEEDRPETGERIRRSLAERLEAMRLRLNQVGRVRELTRWSVAGARVVYLDTALAMECGMRTLSHAVPLEAMIEDLAEDLAVPRQEAALARALDGLWLRCLQQP</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="88" xmlns="http://uniprot.org/uniprot">
    <accession>A9BSK5</accession>
    <name>A9BSK5_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="9">Polar amino acid ABC transporter, inner membrane subunit</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="9" type="ordered locus">Daci_1366</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="9 10" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="10" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="7">Cell membrane</location>
            <topology evidence="7">Multi-pass membrane protein</topology>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the binding-protein-dependent transport system permease family. HisMQ subfamily.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX34010.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012203296.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_1366"/>
    <dbReference type="PRIDE" id="A9BSK5"/>
    <dbReference type="EnsemblBacteria" id="ABX34010">
        <property type="protein sequence ID" value="ABX34010"/>
        <property type="gene ID" value="Daci_1366"/>
    </dbReference>
    <dbReference type="GeneID" id="60685924"/>
    <dbReference type="KEGG" id="dac:Daci_1366"/>
    <dbReference type="eggNOG" id="COG0765">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_019602_1_1_4"/>
    <dbReference type="OMA" id="SHEFLIF"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043190">
        <property type="term" value="C:ATP-binding cassette (ABC) transporter complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0022857">
        <property type="term" value="F:transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006865">
        <property type="term" value="P:amino acid transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd06261">
        <property type="entry name" value="TM_PBP2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.3720.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010065">
        <property type="entry name" value="AA_ABC_transptr_permease_3TM"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043429">
        <property type="entry name" value="ArtM/GltK/GlnP/TcyL/YhdX-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR030205">
        <property type="entry name" value="GltK/AatM"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000515">
        <property type="entry name" value="MetI-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035906">
        <property type="entry name" value="MetI-like_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30614">
        <property type="entry name" value="PTHR30614"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30614:SF1">
        <property type="entry name" value="PTHR30614:SF1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00528">
        <property type="entry name" value="BPD_transp_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF161098">
        <property type="entry name" value="SSF161098"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01726">
        <property type="entry name" value="HEQRo_perm_3TM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50928">
        <property type="entry name" value="ABC_TM1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-0029">Amino-acid transport</keyword>
    <keyword evidence="6 7" id="KW-0472">Membrane</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 7" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="5 7" id="KW-1133">Transmembrane helix</keyword>
    <keyword evidence="7" id="KW-0813">Transport</keyword>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="23"/>
            <end position="47"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="68"/>
            <end position="86"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="92"/>
            <end position="109"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="153"/>
            <end position="174"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="194"/>
            <end position="212"/>
        </location>
    </feature>
    <feature type="domain" description="ABC transmembrane type-1" evidence="8">
        <location>
            <begin position="23"/>
            <end position="212"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00010072"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022970"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="RuleBase" id="RU363032"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="PROSITE" id="PS50928"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="ABX34010.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="223" mass="24918" checksum="952E3E89486F2410" modified="2008-01-15" version="1">MNLQIDWSFFTWDLFSNFVLKGLYFSLTLTVIATIGGVLFGTVLALMRLSGKKWLDVPATLYVNGMRSVPLVMVILWFFLLMPLIIGRPIGAEVSAIITFIAFEAAYFSEIMRAGIQSIPRGQVSAGQAMGMTYGQNMRLVVLPQAFRNMLPVLLTQTIILFQDTSLVYAIGAYDMLKGFEVAGKNYGRPIESYLAAGVTYFVLCYSLSWAVKRLHKKIAIIR</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="58" xmlns="http://uniprot.org/uniprot">
    <accession>A9BSK9</accession>
    <name>A9BSK9_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ordered locus">Daci_1370</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="5" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Periplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the UPF0065 (bug) family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX34014.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012203300.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_1370"/>
    <dbReference type="PRIDE" id="A9BSK9"/>
    <dbReference type="EnsemblBacteria" id="ABX34014">
        <property type="protein sequence ID" value="ABX34014"/>
        <property type="gene ID" value="Daci_1370"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_1370"/>
    <dbReference type="eggNOG" id="COG3181">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_045683_0_0_4"/>
    <dbReference type="OMA" id="GQLNVEM"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0042597">
        <property type="term" value="C:periplasmic space"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.190.150">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005064">
        <property type="entry name" value="BUG"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR042100">
        <property type="entry name" value="Bug_dom1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006311">
        <property type="entry name" value="TAT_signal"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR42928">
        <property type="entry name" value="PTHR42928"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03401">
        <property type="entry name" value="TctC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF017082">
        <property type="entry name" value="YflP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51318">
        <property type="entry name" value="TAT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="3">
        <location>
            <begin position="1"/>
            <end position="36"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5002732470" evidence="3">
        <location>
            <begin position="37"/>
            <end position="338"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004418"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00006987"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="ABX34014.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="338" mass="35940" checksum="403001DE02785C05" modified="2008-01-15" version="1">MKNLSVNPSVPTRRKLLGAGLGLAGLSALAPLAARADDKYPSRPITLVVPFPPGGSVDIMGRQYAEPLSRILGAPIVVENRPGAGGSVATQYVSRAKPDGYTLVVSSQSSHLANPLTQPKVGYDPIKDFENIAILGRQPNALMVHSSLPVKNFQEFIEYVKKRPGQVNYGSAGIGSMGQLNVEMLKAATGIFATHIPYRGGSPLVTAAIGNEVQFILDNLVFMLPHVQSGKVRALVVASEQRLPMLPDVPTMAEVGYPQLNMSSWTGIAAPAGTPDAIVQTLYKAIRQAATAPAMVASLKERGVVAPEEMSPAAFENMMAERLKLFGEVVRKAHIVAE</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="76" xmlns="http://uniprot.org/uniprot">
    <accession>A9BSW7</accession>
    <name>A9BSW7_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="6">Methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ordered locus">Daci_1684</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="7" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the methyl-accepting chemotaxis (MCP) protein family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX34327.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012203612.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_1684"/>
    <dbReference type="PRIDE" id="A9BSW7"/>
    <dbReference type="EnsemblBacteria" id="ABX34327">
        <property type="protein sequence ID" value="ABX34327"/>
        <property type="gene ID" value="Daci_1684"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_1684"/>
    <dbReference type="eggNOG" id="COG0840">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_000445_107_26_4"/>
    <dbReference type="OMA" id="ITYVNAR"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004888">
        <property type="term" value="F:transmembrane signaling receptor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006935">
        <property type="term" value="P:chemotaxis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0007165">
        <property type="term" value="P:signal transduction"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd00130">
        <property type="entry name" value="PAS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004090">
        <property type="entry name" value="Chemotax_Me-accpt_rcpt"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003660">
        <property type="entry name" value="HAMP_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004089">
        <property type="entry name" value="MCPsignal_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000014">
        <property type="entry name" value="PAS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035965">
        <property type="entry name" value="PAS-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013655">
        <property type="entry name" value="PAS_fold_3"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00015">
        <property type="entry name" value="MCPsignal"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08447">
        <property type="entry name" value="PAS_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00260">
        <property type="entry name" value="CHEMTRNSDUCR"/>
    </dbReference>
    <dbReference type="SMART" id="SM00283">
        <property type="entry name" value="MA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55785">
        <property type="entry name" value="SSF55785"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00229">
        <property type="entry name" value="sensory_box"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50111">
        <property type="entry name" value="CHEMOTAXIS_TRANSDUC_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50885">
        <property type="entry name" value="HAMP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50112">
        <property type="entry name" value="PAS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0807">Transducer</keyword>
    <feature type="domain" description="PAS" evidence="4">
        <location>
            <begin position="23"/>
            <end position="60"/>
        </location>
    </feature>
    <feature type="domain" description="HAMP" evidence="5">
        <location>
            <begin position="219"/>
            <end position="271"/>
        </location>
    </feature>
    <feature type="domain" description="Methyl-accepting transducer" evidence="3">
        <location>
            <begin position="276"/>
            <end position="505"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00029447"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00284"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="PROSITE" id="PS50111"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="PROSITE" id="PS50112"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="PROSITE" id="PS50885"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="ABX34327.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="525" mass="55960" checksum="7D22123BF91FF4F3" modified="2008-01-15" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="48" xmlns="http://uniprot.org/uniprot">
    <accession>A9BSZ0</accession>
    <name>A9BSZ0_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_1707</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX34350.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012203635.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="PRIDE" id="A9BSZ0"/>
    <dbReference type="EnsemblBacteria" id="ABX34350">
        <property type="protein sequence ID" value="ABX34350"/>
        <property type="gene ID" value="Daci_1707"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_1707"/>
    <dbReference type="eggNOG" id="ENOG50317QE">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_087620_1_0_4"/>
    <dbReference type="OMA" id="TAMIISP"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR046291">
        <property type="entry name" value="DUF6328"/>
    </dbReference>
    <dbReference type="Pfam" id="PF19853">
        <property type="entry name" value="DUF6328"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="62"/>
            <end position="83"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="104"/>
            <end position="124"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="130"/>
            <end position="151"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX34350.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="161" mass="18007" checksum="1D3E116B10E69D56" modified="2008-01-15" version="1">MKSEHNQTHADKEMSEINNDGDLTDLLGELRILLPSSQLLSAFLITVPFMPRFDAIAYTEKWVFLATFLLAVMSLILLSATAVQHRLIRPLIDRPRFKTFASRQILAGAVTLAIALISGTQLVLSTIFGHFVGSIAAALIAVLILTTWWWLPRHWKEAGRL</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="60" xmlns="http://uniprot.org/uniprot">
    <accession>A9BT25</accession>
    <name>A9BT25_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Heavy metal efflux pump, CzcA family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ordered locus">Daci_1742</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="5" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX34385.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012203670.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_1742"/>
    <dbReference type="PRIDE" id="A9BT25"/>
    <dbReference type="EnsemblBacteria" id="ABX34385">
        <property type="protein sequence ID" value="ABX34385"/>
        <property type="gene ID" value="Daci_1742"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_1742"/>
    <dbReference type="eggNOG" id="COG3696">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_002755_1_2_4"/>
    <dbReference type="OMA" id="VYAEFDW"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008324">
        <property type="term" value="F:cation transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.2090.10">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027463">
        <property type="entry name" value="AcrB_DN_DC_subdom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001036">
        <property type="entry name" value="Acrflvin-R"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004763">
        <property type="entry name" value="CzcA/CusA/SilA/NccA/HelA/CnrA"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR32063">
        <property type="entry name" value="PTHR32063"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00873">
        <property type="entry name" value="ACR_tran"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00702">
        <property type="entry name" value="ACRIFLAVINRP"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF82714">
        <property type="entry name" value="SSF82714"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00914">
        <property type="entry name" value="2A0601"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-0472">Membrane</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="3" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="3">
        <location>
            <begin position="367"/>
            <end position="386"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="3">
        <location>
            <begin position="447"/>
            <end position="465"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="3">
        <location>
            <begin position="477"/>
            <end position="502"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="3">
        <location>
            <begin position="536"/>
            <end position="555"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="3">
        <location>
            <begin position="858"/>
            <end position="877"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="3">
        <location>
            <begin position="884"/>
            <end position="904"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="3">
        <location>
            <begin position="910"/>
            <end position="928"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="3">
        <location>
            <begin position="962"/>
            <end position="981"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="3">
        <location>
            <begin position="993"/>
            <end position="1018"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00010942"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="ABX34385.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="1043" mass="112489" checksum="FA692417820F7376" modified="2008-01-15" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="33" xmlns="http://uniprot.org/uniprot">
    <accession>A9BTD4</accession>
    <name>A9BTD4_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Daci_2059</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="2" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX34699.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_2059"/>
    <dbReference type="PRIDE" id="A9BTD4"/>
    <dbReference type="EnsemblBacteria" id="ABX34699">
        <property type="protein sequence ID" value="ABX34699"/>
        <property type="gene ID" value="Daci_2059"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_2059"/>
    <dbReference type="HOGENOM" id="CLU_104537_0_0_4"/>
    <dbReference type="OMA" id="AHAQMAP"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ABX34699.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="231" mass="24132" checksum="E3453F083F0027C0" modified="2008-01-15" version="1">MDLRWMKTSRPMARLLQQDAKSLSQCLENRALRHPPHRSPSFGGETMAAVSLSFAGVPLPRLRAHPDRARSKPLNVPASFASAAVPRASGFASAREAGDGGAHAQMAPVAMLTRVSEGVRIVRRNDVIAAQAGAVLQQGDRVIVPQQGGAQAVFQEQDGQALLGSFAGGTDATLAYFSRKADACSVVFDLVAGHVDLALSAVDAGVLGGGPSGRGRRAIGFHCYSQPIAGR</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="59" xmlns="http://uniprot.org/uniprot">
    <accession>A9BTI5</accession>
    <name>A9BTI5_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="5">RND efflux system, outer membrane lipoprotein, NodT family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ordered locus">Daci_2315</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="6" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="2">Cell membrane</location>
            <topology evidence="2">Lipid-anchor</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="1 2">Belongs to the outer membrane factor (OMF) (TC 1.B.17) family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX34953.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012204235.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_2315"/>
    <dbReference type="PRIDE" id="A9BTI5"/>
    <dbReference type="EnsemblBacteria" id="ABX34953">
        <property type="protein sequence ID" value="ABX34953"/>
        <property type="gene ID" value="Daci_2315"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_2315"/>
    <dbReference type="eggNOG" id="COG1538">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_012817_13_1_4"/>
    <dbReference type="OMA" id="WGKLAAQ"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015562">
        <property type="term" value="F:efflux transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003423">
        <property type="entry name" value="OMP_efflux"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010131">
        <property type="entry name" value="RND_efflux_OM_lipoprot_NodT"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02321">
        <property type="entry name" value="OEP"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01845">
        <property type="entry name" value="outer_NodT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="2 5" id="KW-0449">Lipoprotein</keyword>
    <keyword evidence="2" id="KW-0472">Membrane</keyword>
    <keyword evidence="2" id="KW-0564">Palmitate</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0732">Signal</keyword>
    <keyword evidence="2" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="2" id="KW-1134">Transmembrane beta strand</keyword>
    <feature type="signal peptide" evidence="2">
        <location>
            <begin position="1"/>
            <end position="16"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5001436692" evidence="2">
        <location>
            <begin position="17"/>
            <end position="461"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="4">
        <location>
            <begin position="102"/>
            <end position="123"/>
        </location>
    </feature>
    <feature type="coiled-coil region" evidence="3">
        <location>
            <begin position="217"/>
            <end position="251"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="4">
        <location>
            <begin position="106"/>
            <end position="123"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00007613"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="RuleBase" id="RU362097"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="ABX34953.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="461" mass="49439" checksum="7396841B5F8A800C" modified="2008-01-15" version="1">MHMLKTSALACAVALAGCGAITRPPYEAPQVALPAQFEHAQASSPAATPTPMTDAWWHGFGDPRLDAWIDLALARNPDMATAGIRVRRAALQAQLAGHALLPQPSGSAGTGASRPLSGSQRSTLENASATLGVAWELDLFDRLGAQRDAAVFEAQASVQDRNAVALSLTTTTASLYWQLALANERLDMSRQSLEYVRRTIDLVQAQYRSGAVSGLELREARQALAEQQALLSQYTQARAELRQALAELLQGAEPPGGEPQALPVADLPAVQPGLPADLLGRRPDLRAAELRLRGALAGSDATAASYYPRLSLTGSLGTSSSTLLDVLANPVAALGANLALPFLNVREMRLNTAIARSQYEEAVVNFRKTLYAALAETEKSLSARTELALQEEAQQRATQESVEITRLYEARYRAGQVPLRTWLDAQERRRAAQLALSALHLARLQNQLTLHKALGGGWPAS</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="48" xmlns="http://uniprot.org/uniprot">
    <accession>A9BTL4</accession>
    <name>A9BTL4_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Extracellular repeat protein, HAF family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_2344</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX34982.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_2344"/>
    <dbReference type="PRIDE" id="A9BTL4"/>
    <dbReference type="EnsemblBacteria" id="ABX34982">
        <property type="protein sequence ID" value="ABX34982"/>
        <property type="gene ID" value="Daci_2344"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_2344"/>
    <dbReference type="eggNOG" id="COG5563">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_054530_1_0_4"/>
    <dbReference type="OMA" id="INNAGHI"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014262">
        <property type="entry name" value="Extracellular_HAF"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR02913">
        <property type="entry name" value="HAF_rpt"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="1">
        <location>
            <begin position="1"/>
            <end position="25"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5002736035" evidence="1">
        <location>
            <begin position="26"/>
            <end position="403"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX34982.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="403" mass="40522" checksum="E1837F7639FD21EC" modified="2008-01-15" version="1">MTVPAFYFPLVLTGGLMLASSMAQAGPMQDIGTASGPQCAGLDVNNSGYVVGACAEANGSASGFVALAPGSAVDLAHLVDGRNCVAGAITNVGRLVGWCMNSNSLPTGVVWNATAPTTVQALQALVGGVRTKVTALSQSGAVAGVSLNADNTALPVMWRNNETTARTLPAGLLGLVATNCVPADVDDHSVNPTMPNIVGNCPGSSGRPQPVLWSPGLLGTYASAALPLPADALHCRASQVVNSRILGHCDFGAQGGHAVLWSNPASAPLVLSTGAQRSSAKTLNANGRVIGKYSNTNGDPVPFHWDTTTNVRTDIPAPTGGMHASVSDIGDNGNVVGSSEMGDGTRHAFKWTLAGGSVDLGTLPGGKNSGAIALSQDGCYLTGGSETGSGQDTHAFVQNLCAP</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="57" xmlns="http://uniprot.org/uniprot">
    <accession>A9BTU6</accession>
    <name>A9BTU6_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">HTH_17 domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Daci_2722</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="4" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX35360.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_2722"/>
    <dbReference type="PRIDE" id="A9BTU6"/>
    <dbReference type="EnsemblBacteria" id="ABX35360">
        <property type="protein sequence ID" value="ABX35360"/>
        <property type="gene ID" value="Daci_2722"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_2722"/>
    <dbReference type="eggNOG" id="COG3311">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_140176_9_0_4"/>
    <dbReference type="OMA" id="EKHRVYG"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009061">
        <property type="entry name" value="DNA-bd_dom_put_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041657">
        <property type="entry name" value="HTH_17"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12728">
        <property type="entry name" value="HTH_17"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46955">
        <property type="entry name" value="SSF46955"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HTH_17" evidence="2">
        <location>
            <begin position="27"/>
            <end position="77"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="78"/>
            <end position="98"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="82"/>
            <end position="98"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF12728"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ABX35360.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="98" mass="11027" checksum="13061CF384EC466B" modified="2008-01-15" version="1">MEVLTMRPAPLRPAATVSTAAAQPQRYLTNDEAAEYLRLSPRTLEKQRVLGGGPKFRKFGRRVMYAVVDLDAWAAERSFESTSEPEYAEQHSADSRAR</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="78" xmlns="http://uniprot.org/uniprot">
    <accession>A9BU59</accession>
    <name>A9BU59_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Transcriptional regulator, LysR family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Daci_3136</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="4" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the LysR transcriptional regulatory family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX35774.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012204975.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_3136"/>
    <dbReference type="PRIDE" id="A9BU59"/>
    <dbReference type="EnsemblBacteria" id="ABX35774">
        <property type="protein sequence ID" value="ABX35774"/>
        <property type="gene ID" value="Daci_3136"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_3136"/>
    <dbReference type="eggNOG" id="COG0583">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_039613_6_0_4"/>
    <dbReference type="OMA" id="ICWDAAD"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003700">
        <property type="term" value="F:DNA-binding transcription factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005119">
        <property type="entry name" value="LysR_subst-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000847">
        <property type="entry name" value="Tscrpt_reg_HTH_LysR"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036390">
        <property type="entry name" value="WH_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00126">
        <property type="entry name" value="HTH_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03466">
        <property type="entry name" value="LysR_substrate"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46785">
        <property type="entry name" value="SSF46785"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50931">
        <property type="entry name" value="HTH_LYSR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HTH lysR-type" evidence="2">
        <location>
            <begin position="4"/>
            <end position="61"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00009437"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS50931"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ABX35774.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="307" mass="32681" checksum="0142629B93273AB5" modified="2008-01-15" version="1">MKDLDLTTLRLFVAACDLGNIARAGEQQHIGSSAISKRMALLEEQVQAPLLERHRRGVVPTAAGLMLLEHARAMLASADRAARDMAAYQHGVKGQVRILASVSSIAESLPDDIAAFLQKPEHAQIRVDIEELTSSEIIRSIREGLALVGVCWNAADLEGLQTLPYRCDTLAVAVPAGHPLALRDSCSFSETLDCEHVGLPASTAVYTMLARAAAIIGRPINYRAVVSSFDATIRCVRAGLGVAIMPREILGMAGSGQGGQGVQGVNMVPLTDAWARRQFAICFRDGSRLSPAARTLVDYLAGCAQAG</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-05-25" version="82" xmlns="http://uniprot.org/uniprot">
    <accession>A9BU74</accession>
    <name>A9BU74_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="8">Transport system permease protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="8" type="ordered locus">Daci_3151</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="9" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX35789.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012204990.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_3151"/>
    <dbReference type="EnsemblBacteria" id="ABX35789">
        <property type="protein sequence ID" value="ABX35789"/>
        <property type="gene ID" value="Daci_3151"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_3151"/>
    <dbReference type="eggNOG" id="COG0609">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_013016_1_0_4"/>
    <dbReference type="OMA" id="VFIWIVR"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0022857">
        <property type="term" value="F:transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.3470.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037294">
        <property type="entry name" value="ABC_BtuC-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000522">
        <property type="entry name" value="ABC_transptr_permease_BtuC"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30472">
        <property type="entry name" value="PTHR30472"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01032">
        <property type="entry name" value="FecCD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF81345">
        <property type="entry name" value="SSF81345"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="6 7" id="KW-0472">Membrane</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4 7" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="5 7" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="79"/>
            <end position="99"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="111"/>
            <end position="131"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="137"/>
            <end position="157"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="169"/>
            <end position="191"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="211"/>
            <end position="233"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="300"/>
            <end position="322"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="328"/>
            <end position="347"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00007935"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="ABX35789.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="354" mass="35616" checksum="299E494875E92BE4" modified="2008-01-15" version="1">MRARLLGAVARPAQRSCSRSSLHCRRWLGLAGGLLALAIIAVLGITVGSRDIALADILGALRAPNLRDDQHLIVSLLRMPRTVVAILAGMALGVAGALMQAVTRNPLAEPGLLGVNAGAALAVLIGMTAFGLTSVLQYVWCAFAGAGLAGAAVFAFGQSRGAGAHPVRLVLAGAGLSVMLTSSAGIILLNAPPEVFDGFRHWAAGSLEGSGYASAAVLAAAVAAGLAAAWAIVGQLNAMALGHDVGLALGVNVRATAQLACLAVMLLAGAATAAVGPIAFVGLVAPHLARLSCGPDYRWILPLSALYAAVLLLGADVLGRVVAAPAEVAAGIVACLIGGPFFVWVACRYRLSRL</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="67" xmlns="http://uniprot.org/uniprot">
    <accession>A9BUC9</accession>
    <name>A9BUC9_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="7">Major facilitator superfamily MFS_1</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ordered locus">Daci_1187</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="8" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX33832.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012203118.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_1187"/>
    <dbReference type="PRIDE" id="A9BUC9"/>
    <dbReference type="EnsemblBacteria" id="ABX33832">
        <property type="protein sequence ID" value="ABX33832"/>
        <property type="gene ID" value="Daci_1187"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_1187"/>
    <dbReference type="eggNOG" id="COG2814">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_001265_23_0_4"/>
    <dbReference type="OMA" id="GMHISNQ"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0022857">
        <property type="term" value="F:transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.1250.20">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011701">
        <property type="entry name" value="MFS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020846">
        <property type="entry name" value="MFS_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036259">
        <property type="entry name" value="MFS_trans_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07690">
        <property type="entry name" value="MFS_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF103473">
        <property type="entry name" value="SSF103473"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50850">
        <property type="entry name" value="MFS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4 5" id="KW-0472">Membrane</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 5" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="3 5" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="21"/>
            <end position="43"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="63"/>
            <end position="82"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="94"/>
            <end position="119"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="125"/>
            <end position="143"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="150"/>
            <end position="169"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="175"/>
            <end position="196"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="232"/>
            <end position="253"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="265"/>
            <end position="282"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="294"/>
            <end position="310"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="354"/>
            <end position="376"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="382"/>
            <end position="400"/>
        </location>
    </feature>
    <feature type="domain" description="MFS" evidence="6">
        <location>
            <begin position="27"/>
            <end position="409"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="PROSITE" id="PS50850"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="ABX33832.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="421" mass="43236" checksum="EA5A7A4BD4FA9F32" modified="2008-01-15" version="1">MNRSSQACAQPSPPMQATATPVLPQSTLLLMATACGLCAGANYFNQPLLHSIAIDLGISEARASLTVTMAQVSYALGLLLLVPLGDMLERRRLVLGLMLLAALGMLASGMAHSFALLAAGTLMTGLFSVAAQVLVPMAASFAAPGASGRAVGLVMSGLLIGILAARSVAGLLSELGGWNAVYWVGALATAGVALLLRRALPLAQPAQPIGYGAVMRSLLTLAREQPRLRSRALIGGMGFATVSVLFSTMALLLAGPGYGFGDAQIGLIGLVGVAGALMANMAGRLADRGLEQRTTLAGGLLMLAGWGALWLGGTSLWWFLAGLLIVDAALQALHISNQNVIYALAPLARSRINAVYMTGYFIGASAGSAVGSAVWLHWGWTGASVAGLILSLATLAVVAWDRSLARQAQQTGQTVQPQGRV</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="36" xmlns="http://uniprot.org/uniprot">
    <accession>A9BUF8</accession>
    <name>A9BUF8_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Daci_1217</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="2" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX33861.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012203147.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="PRIDE" id="A9BUF8"/>
    <dbReference type="EnsemblBacteria" id="ABX33861">
        <property type="protein sequence ID" value="ABX33861"/>
        <property type="gene ID" value="Daci_1217"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_1217"/>
    <dbReference type="HOGENOM" id="CLU_1892791_0_0_4"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ABX33861.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="128" mass="14330" checksum="C8FE2ACAB332FBEB" modified="2008-01-15" version="1">MHATSAHARGTSQCPDSQQMMALAIRCAEHRLEVLIATTDTDNVRDETDVEVELVAELALHHIRRMKDMKLGCASEFDSEWYRARSAVALAVQAFSRPDSVYGKRLSLALRVFDEGASFVEFVEQGMK</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="49" xmlns="http://uniprot.org/uniprot">
    <accession>A9BUR3</accession>
    <name>A9BUR3_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Periplasmic lipoprotein-like protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ordered locus">Daci_1527</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="5" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX34171.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012203457.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_1527"/>
    <dbReference type="PRIDE" id="A9BUR3"/>
    <dbReference type="EnsemblBacteria" id="ABX34171">
        <property type="protein sequence ID" value="ABX34171"/>
        <property type="gene ID" value="Daci_1527"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_1527"/>
    <dbReference type="eggNOG" id="COG3489">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_749769_0_0_4"/>
    <dbReference type="OMA" id="FWPDKKN"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="CDD" id="cd14659">
        <property type="entry name" value="Imelysin-like_IPPA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.1420.20">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018976">
        <property type="entry name" value="Imelysin-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR034984">
        <property type="entry name" value="Imelysin-like_IPPA"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038352">
        <property type="entry name" value="Imelysin_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF09375">
        <property type="entry name" value="Peptidase_M75"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-0449">Lipoprotein</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1 2" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="2">
        <location>
            <begin position="1"/>
            <end position="27"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5002733095" evidence="2">
        <location>
            <begin position="28"/>
            <end position="361"/>
        </location>
    </feature>
    <feature type="domain" description="Peptidase_M75" evidence="3">
        <location>
            <begin position="55"/>
            <end position="329"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022729"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF09375"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="ABX34171.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="361" mass="38620" checksum="4464524B42F0B3FE" modified="2008-01-15" version="1">MQDMRMTPRQILCAAALALLAAAPVHAQEVDANMAIPFYNTAHAVQGLYGQWFSPQAKAAQASAQALSQALRAHCTAPAGSAAATLQTARQAYVQSSRQWSSLSAVALGPLVERRSARLVDFRPMRPALLKKAIQSAPADLAAMERIGAPAKGYPALENLLWTQPVEPQTPACAYATLVAEEIGAEMGILSNGFAKLAAQDWSEDGDATTEAMAEFINQWVGGLERLRWADMEKPLRSAGSAGSKPPAWEHLASGSTLEIWRAHWQGLRTLAVSVDRKVPQPGVDIVPIESYLRGRGLNPLADRWLKAVNEADAGMRALTEPSAKAVDAATKPLSRLKRLMEGEVAPALEVNIGFSDADGD</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="57" xmlns="http://uniprot.org/uniprot">
    <accession>A9BUU0</accession>
    <name>A9BUU0_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="4">MmgE/PrpD family protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ordered locus">Daci_1760</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="5" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the PrpD family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX34402.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012203687.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_1760"/>
    <dbReference type="PRIDE" id="A9BUU0"/>
    <dbReference type="EnsemblBacteria" id="ABX34402">
        <property type="protein sequence ID" value="ABX34402"/>
        <property type="gene ID" value="Daci_1760"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_1760"/>
    <dbReference type="eggNOG" id="COG2079">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_026574_3_1_4"/>
    <dbReference type="OMA" id="AFRMDSM"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016829">
        <property type="term" value="F:lyase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.4100.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.1330.120">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036148">
        <property type="entry name" value="MmgE/PrpD_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR042183">
        <property type="entry name" value="MmgE/PrpD_sf_1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR042188">
        <property type="entry name" value="MmgE/PrpD_sf_2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005656">
        <property type="entry name" value="MmgE_PrpD"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045337">
        <property type="entry name" value="MmgE_PrpD_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045336">
        <property type="entry name" value="MmgE_PrpD_N"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR16943">
        <property type="entry name" value="PTHR16943"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03972">
        <property type="entry name" value="MmgE_PrpD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF19305">
        <property type="entry name" value="MmgE_PrpD_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF103378">
        <property type="entry name" value="SSF103378"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="MmgE_PrpD" evidence="2">
        <location>
            <begin position="7"/>
            <end position="245"/>
        </location>
    </feature>
    <feature type="domain" description="MmgE_PrpD_C" evidence="3">
        <location>
            <begin position="268"/>
            <end position="433"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00006174"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF03972"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF19305"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="ABX34402.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="445" mass="47107" checksum="763A7DD3BC47CD08" modified="2008-01-15" version="1">MHATEVFGQFAARYHRTELPETVIHHAKRAVIDWYAALFPGLGAAPLAQLEQVLAEDLDRGSCRLGNGRMATARAAALFNGSAAHAAEVDDSFRDAMYHPGAATIAAALAASQQAGARGLDFLRAVVLGYEVSTRIGVTLGRAHYRFWHNTGTVGVFGAAAAAGYALRLDAGQFAHALATAATFSAGLQQAFRMDSMSKPLHAGRAAEAGLLAAQLAHQGVTGSLDVLDGELGLGRAVSDGPDWSDIGATLGSDFHITRLTFKNHVGCGHAFAAIDAALALRSQHALRADDICSVAVATYGPALDIACYTDPATENEARFSLRFVVATALVHGSVRLSAYTPERLADPAVRAMLERVQVAVDPQIDRAFPGKRSARVEIVTRDGRCHGWFQPDRKGDPELPLSDGELEDKFIELAAPVAGEGRARQLLSNIWELERAGCLAGLAA</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-01-19" version="60" xmlns="http://uniprot.org/uniprot">
    <accession>A9BUX2</accession>
    <name>A9BUX2_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Flavin reductase domain protein FMN-binding</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_1792</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX34434.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012203719.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_1792"/>
    <dbReference type="EnsemblBacteria" id="ABX34434">
        <property type="protein sequence ID" value="ABX34434"/>
        <property type="gene ID" value="Daci_1792"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_1792"/>
    <dbReference type="eggNOG" id="COG1853">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_059021_1_0_4"/>
    <dbReference type="OMA" id="FMVGRTS"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0010181">
        <property type="term" value="F:FMN binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016646">
        <property type="term" value="F:oxidoreductase activity, acting on the CH-NH group of donors, NAD or NADP as acceptor"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.30.110.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002563">
        <property type="entry name" value="Flavin_Rdtase-like_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012349">
        <property type="entry name" value="Split_barrel_FMN-bd"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01613">
        <property type="entry name" value="Flavin_Reduct"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00903">
        <property type="entry name" value="Flavin_Reduct"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Flavin_Reduct" evidence="1">
        <location>
            <begin position="24"/>
            <end position="167"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="SMART" id="SM00903"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX34434.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="175" mass="19042" checksum="9927BB1D846726F7" modified="2008-01-15" version="1">MSTCDTPATATACSFDPRELRKAFGQFTTGVTVITTRAPDGRRVGMTANSFSSVSLDPPLVLWSLARQAPSVCDFQGASHFAIHVLAAGQHPLSRRFSTPQQDKFVGLDCAEGPAGVPLIDGVLARFVCRNVRQYDGGDHLIFIGQVERCERFDGEPLAFHAGYYQVTVRHPQCV</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="50" xmlns="http://uniprot.org/uniprot">
    <accession>A9BVE4</accession>
    <name>A9BVE4_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Daci_2373</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="2" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX35011.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012204293.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_2373"/>
    <dbReference type="PRIDE" id="A9BVE4"/>
    <dbReference type="EnsemblBacteria" id="ABX35011">
        <property type="protein sequence ID" value="ABX35011"/>
        <property type="gene ID" value="Daci_2373"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_2373"/>
    <dbReference type="eggNOG" id="COG5403">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_080945_1_0_4"/>
    <dbReference type="OMA" id="LMGAMKK"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009282">
        <property type="entry name" value="DUF937"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018247">
        <property type="entry name" value="EF_Hand_1_Ca_BS"/>
    </dbReference>
    <dbReference type="Pfam" id="PF06078">
        <property type="entry name" value="DUF937"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00018">
        <property type="entry name" value="EF_HAND_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ABX35011.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="217" mass="20575" checksum="A5A460DDF299E7A5" modified="2008-01-15" version="1">MNSSSSLAAELMAQLQGAPMQQMADQIGASPAQTESAVGAALPVLLASLGRNAADPQGAANLFGALQRDHGAASGGGAGGLDLGGLLGSLLGGGAGAGGNAGGGLDGAAILGHILGGNQQRAQDGLGQATGLGSGGAAQLLQLLAPIVMSFLAQRVSAGGMDAGGLGQVLGREHAQAQQQGGLGGGLLGSLLDQDGDGQVGLSDLMKIGGSLLGGRR</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2020-10-07" version="51" xmlns="http://uniprot.org/uniprot">
    <accession>A9BVU5</accession>
    <name>A9BVU5_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Daci_2820</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="4" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Periplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the UPF0065 (bug) family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX35458.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_2820"/>
    <dbReference type="EnsemblBacteria" id="ABX35458">
        <property type="protein sequence ID" value="ABX35458"/>
        <property type="gene ID" value="Daci_2820"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_2820"/>
    <dbReference type="eggNOG" id="COG3181">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_045683_0_0_4"/>
    <dbReference type="OMA" id="GYNGTLW"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0042597">
        <property type="term" value="C:periplasmic space"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.190.150">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005064">
        <property type="entry name" value="BUG"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR042100">
        <property type="entry name" value="Bug_dom1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR42928">
        <property type="entry name" value="PTHR42928"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03401">
        <property type="entry name" value="TctC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004418"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00006987"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ABX35458.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="359" mass="37266" checksum="3A0A74F170803BB3" modified="2008-01-15" version="1">MRDCALARHGQPCGLAKRTNGDMTMPDSFFPLPSSLLRRRSLVAAALALPLLGHAQAWPARPIVMIVPQAPGGTNDIVGRLVSQKLAEVLGASVVVENRPGAGGNIGTQAVAKAPRDGHTLLMTISSSQAINPALYRKPGFDPVKDFRPIGLIGSVPNVLLAHPGFAAKSVPELIAMARGRPDEFRYASAGNGTLNHLLGEMLNSMAGIQLQHVPYKGVAPALNDVLGGQVPLLFGSLPSTLPHIQAGRLRALAVSGAARSPLLPDVPTIGETVPGYNGTLWVGLFAPEGVPAPVLAQLQDGMARALAAGDLRGKLEASGVELAGPADRPVPPAQMAALLREDIAKWARIVKASGASLD</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="44" xmlns="http://uniprot.org/uniprot">
    <accession>A9BW67</accession>
    <name>A9BW67_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Daci_3245</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="2" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX35883.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012205083.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_3245"/>
    <dbReference type="PRIDE" id="A9BW67"/>
    <dbReference type="EnsemblBacteria" id="ABX35883">
        <property type="protein sequence ID" value="ABX35883"/>
        <property type="gene ID" value="Daci_3245"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_3245"/>
    <dbReference type="eggNOG" id="ENOG502ZDW4">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_110248_0_0_4"/>
    <dbReference type="OMA" id="GNPEIWA"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ABX35883.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="189" mass="20684" checksum="3EC135625D5E33BB" modified="2008-01-15" version="1">MGFADDLQRVCLVQIERSREIVRRTLLEILSDCVDGSPVGNPDLWKANQGVISSREAYREEAFTYNAANPGKRRKGTSRQVVNKKFPLAVGKGYTGGRFKNNWQVGIGFINAAVEETPDASGSGSLKRAATVFDGLKLGMVIYVSNNLPYAKRLEYGWSKQAPNGMVRLSLQNTGQALKKTADAVRGEA</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="65" xmlns="http://uniprot.org/uniprot">
    <accession>A9BWC4</accession>
    <name>A9BWC4_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Trans-aconitate 2-methyltransferase</fullName>
            <ecNumber evidence="2">2.1.1.144</ecNumber>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_3508</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EC" id="2.1.1.144" evidence="2"/>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX36144.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_3508"/>
    <dbReference type="PRIDE" id="A9BWC4"/>
    <dbReference type="EnsemblBacteria" id="ABX36144">
        <property type="protein sequence ID" value="ABX36144"/>
        <property type="gene ID" value="Daci_3508"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_3508"/>
    <dbReference type="eggNOG" id="COG4106">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_037990_5_2_4"/>
    <dbReference type="OMA" id="RFDARYY"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030798">
        <property type="term" value="F:trans-aconitate 2-methyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0032259">
        <property type="term" value="P:methylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.150.290">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.150">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041698">
        <property type="entry name" value="Methyltransf_25"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029063">
        <property type="entry name" value="SAM-dependent_MTases_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023149">
        <property type="entry name" value="Trans_acon_MeTrfase_C"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13649">
        <property type="entry name" value="Methyltransf_25"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53335">
        <property type="entry name" value="SSF53335"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0489">Methyltransferase</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Methyltransf_25" evidence="1">
        <location>
            <begin position="38"/>
            <end position="126"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF13649"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX36144.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="257" mass="28175" checksum="F1A5BA6265CA49FE" modified="2008-01-15" version="1">MTWSAKQYTTFEQERTRPVRDLVAAIPDLPGRAVRLAVDLGCGPGNSTEVLAQRFPGATVTGLDNSEDMLDAARKRLPGTAFSLADIATWQPDQPQDVILANASLQWLPDHQQLYPRLVSHLAPGGSLAVQTPDNLEEPAHRLAREVAASGPWAATIGDVRHPARHSADFYYALLRPHCSNVDVWRTTYFHPLAGSHAAVVEWFKGSALRPFVAPLDEEQKAGFYAAYLQAISQAYPALDDGTVLLPFPRLFIVASR</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="85" xmlns="http://uniprot.org/uniprot">
    <accession>A9BWT6</accession>
    <name>A9BWT6_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Two component transcriptional regulator, LuxR family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ordered locus">Daci_3982</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="6" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX36613.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012205807.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_3982"/>
    <dbReference type="PRIDE" id="A9BWT6"/>
    <dbReference type="EnsemblBacteria" id="ABX36613">
        <property type="protein sequence ID" value="ABX36613"/>
        <property type="gene ID" value="Daci_3982"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_3982"/>
    <dbReference type="eggNOG" id="COG4566">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_000445_90_4_4"/>
    <dbReference type="OMA" id="GMTADRT"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000160">
        <property type="term" value="P:phosphorelay signal transduction system"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006355">
        <property type="term" value="P:regulation of transcription, DNA-templated"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd06170">
        <property type="entry name" value="LuxR_C_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011006">
        <property type="entry name" value="CheY-like_superfamily"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016032">
        <property type="entry name" value="Sig_transdc_resp-reg_C-effctor"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001789">
        <property type="entry name" value="Sig_transdc_resp-reg_receiver"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000792">
        <property type="entry name" value="Tscrpt_reg_LuxR_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00196">
        <property type="entry name" value="GerE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00072">
        <property type="entry name" value="Response_reg"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00038">
        <property type="entry name" value="HTHLUXR"/>
    </dbReference>
    <dbReference type="SMART" id="SM00421">
        <property type="entry name" value="HTH_LUXR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00448">
        <property type="entry name" value="REC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46894">
        <property type="entry name" value="SSF46894"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52172">
        <property type="entry name" value="SSF52172"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00622">
        <property type="entry name" value="HTH_LUXR_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50043">
        <property type="entry name" value="HTH_LUXR_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50110">
        <property type="entry name" value="RESPONSE_REGULATORY"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="2" id="KW-0597">Phosphoprotein</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Response regulatory" evidence="4">
        <location>
            <begin position="9"/>
            <end position="123"/>
        </location>
    </feature>
    <feature type="domain" description="HTH luxR-type" evidence="3">
        <location>
            <begin position="139"/>
            <end position="204"/>
        </location>
    </feature>
    <feature type="modified residue" description="4-aspartylphosphate" evidence="2">
        <location>
            <position position="58"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00169"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="PROSITE" id="PS50043"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="PROSITE" id="PS50110"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="ABX36613.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="216" mass="23796" checksum="5AF241F5B9467F6A" modified="2008-01-15" version="1">MSLIPKKGTVYVVDDDEAVRDSLQWLLEGKDYRVRCFDSAETFLSRYDPREIACLIVDIRMGGMTGLELQDRLIERKSPLPIVFITGHGDVPMAVNTMKKGALDFIQKPFNEEELLNLVERMLDHAREAFAGHQQAASRDALLAKLTSREAQVLERIVAGRLNKQIADDLGISIKTVEAHRANIMEKLNANTVADLLKIALGQGQTAAAAKAAVAG</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="52" xmlns="http://uniprot.org/uniprot">
    <accession>A9BWV2</accession>
    <name>A9BWV2_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">NAD-dependent epimerase/dehydratase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_4306</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX36937.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012206109.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_4306"/>
    <dbReference type="PRIDE" id="A9BWV2"/>
    <dbReference type="EnsemblBacteria" id="ABX36937">
        <property type="protein sequence ID" value="ABX36937"/>
        <property type="gene ID" value="Daci_4306"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_4306"/>
    <dbReference type="eggNOG" id="COG0451">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_049717_2_0_4"/>
    <dbReference type="OMA" id="YFDNTYM"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001509">
        <property type="entry name" value="Epimerase_deHydtase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036291">
        <property type="entry name" value="NAD(P)-bd_dom_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01370">
        <property type="entry name" value="Epimerase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51735">
        <property type="entry name" value="SSF51735"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Epimerase" evidence="1">
        <location>
            <begin position="4"/>
            <end position="210"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF01370"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX36937.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="308" mass="34418" checksum="3C0FC9F4158ABFCC" modified="2008-01-15" version="1">MQTILGANGQIAVELARELHRNYTQNLRLVSRKPRKVNDTDELVSADLTNSAQTLEAVRGSEVVYFTAGLPPDTELWERQFPAMLRNALDATRAAGAKFVYFDNTYMYPQTAQRQTEETAFAPVGRKGRVRALMAEMVLAEMQRGDIPVAIARAPEFYGPGKTQSITNTLVIGPLKAGQKAKVPVRDDKLRTLIWTPDASRAMAAIGNAQDAYGQTWHLPCWDERLTYQAFVNLAAATFGVEPRYKVLSHLAMVAAGWVSKPVRELRELLPRYAHDNVFDSSKFKRRFPDFAVTSYAQGLKHIAQESS</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="66" xmlns="http://uniprot.org/uniprot">
    <accession>A9BWX9</accession>
    <name>A9BWX9_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="8">Inner-membrane translocator</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="8" type="ordered locus">Daci_4333</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="9" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX36964.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012206136.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_4333"/>
    <dbReference type="PRIDE" id="A9BWX9"/>
    <dbReference type="EnsemblBacteria" id="ABX36964">
        <property type="protein sequence ID" value="ABX36964"/>
        <property type="gene ID" value="Daci_4333"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_4333"/>
    <dbReference type="eggNOG" id="COG4177">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_031365_1_1_4"/>
    <dbReference type="OMA" id="VFWYKLQ"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015658">
        <property type="term" value="F:branched-chain amino acid transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd06581">
        <property type="entry name" value="TM_PBP1_LivM_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001851">
        <property type="entry name" value="ABC_transp_permease"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR021807">
        <property type="entry name" value="LivHM_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043428">
        <property type="entry name" value="LivM-like"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30482">
        <property type="entry name" value="PTHR30482"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02653">
        <property type="entry name" value="BPD_transp_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF11862">
        <property type="entry name" value="DUF3382"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="5 6" id="KW-0472">Membrane</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 6" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="4 6" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="12"/>
            <end position="31"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="46"/>
            <end position="64"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="85"/>
            <end position="103"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="109"/>
            <end position="130"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="137"/>
            <end position="156"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="162"/>
            <end position="182"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="189"/>
            <end position="210"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="253"/>
            <end position="274"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="308"/>
            <end position="331"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="343"/>
            <end position="370"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="382"/>
            <end position="398"/>
        </location>
    </feature>
    <feature type="domain" description="DUF3382" evidence="7">
        <location>
            <begin position="8"/>
            <end position="98"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="Pfam" id="PF11862"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="ABX36964.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="412" mass="44748" checksum="1FBC45CC9A025E29" modified="2008-01-15" version="1">MKAKPTLNLRDALIATVMTAVVVTPIFGLHLERAGTRTIINPDWTVVAWACALVFLVQLLRPLIAAKMPKVSLPSLPHARPSHRNGLILAALLIAVSWPFFAGRNAVDIATLAMIYVMLGLGLNIVVGFAGLLDLGFVGFYAVGAYTYALLFHWAGWSFWEALPLAGAAAAMFGFVLGFPVLRLRGDYLAIVTLGFGEIIRLMLVNLTSITGGPDGISSIPKPTVLGLEMTRTPSTEGGTTFHQFLGLEFSSLHMVIFLYLMALLLAVITLCISNRLVRMPIGRAWEALREDEIACRSLGLNPMKIKLSAFTLGAMFAGLGGAFFAARQGIVNPESFTFIESALILSIVVLGGMGSQLGVIIAAILLTVLPELAREFSEYRMLIFGLVMVLMMIWRPQGLLPMRRHHVEVRS</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="61" xmlns="http://uniprot.org/uniprot">
    <accession>A9BX69</accession>
    <name>A9BX69_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">Putative glucose-6-phosphate 1-epimerase</fullName>
            <ecNumber evidence="3">5.1.3.15</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="5" type="ordered locus">Daci_5516</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="6" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>alpha-D-glucose 6-phosphate = beta-D-glucose 6-phosphate</text>
            <dbReference type="Rhea" id="RHEA:16249"/>
            <dbReference type="ChEBI" id="CHEBI:58225"/>
            <dbReference type="ChEBI" id="CHEBI:58247"/>
            <dbReference type="EC" id="5.1.3.15"/>
        </reaction>
    </comment>
    <comment type="similarity">
        <text evidence="2 3">Belongs to the glucose-6-phosphate 1-epimerase family.</text>
    </comment>
    <dbReference type="EC" id="5.1.3.15" evidence="3"/>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX38145.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_5516"/>
    <dbReference type="PRIDE" id="A9BX69"/>
    <dbReference type="EnsemblBacteria" id="ABX38145">
        <property type="protein sequence ID" value="ABX38145"/>
        <property type="gene ID" value="Daci_5516"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_5516"/>
    <dbReference type="eggNOG" id="COG0676">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_048345_2_0_4"/>
    <dbReference type="OMA" id="TQALHSY"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030246">
        <property type="term" value="F:carbohydrate binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0047938">
        <property type="term" value="F:glucose-6-phosphate 1-epimerase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005975">
        <property type="term" value="P:carbohydrate metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd09020">
        <property type="entry name" value="D-hex-6-P-epi_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.70.98.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008183">
        <property type="entry name" value="Aldose_1/G6P_1-epimerase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025532">
        <property type="entry name" value="G6P_1-epimerase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011013">
        <property type="entry name" value="Gal_mutarotase_sf_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014718">
        <property type="entry name" value="GH-type_carb-bd"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01263">
        <property type="entry name" value="Aldose_epim"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF016020">
        <property type="entry name" value="PHexose_mutarotase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF74650">
        <property type="entry name" value="SSF74650"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-0413">Isomerase</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <feature type="active site" evidence="4">
        <location>
            <position position="174"/>
        </location>
    </feature>
    <feature type="active site" evidence="4">
        <location>
            <position position="275"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001096"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00005866"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="PIRNR" id="PIRNR016020"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="PIRSR" id="PIRSR016020-1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="ABX38145.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="300" mass="32396" checksum="AC471B7B420B5581" modified="2008-01-15" version="1">MKVTSSFPAVTALPAAAQAPGACADAWQGLPAIRLRLACGDTALVALQGAQLLSWQAGGEEQLFLSPHAAHDGHTPIRGGIPVCFPQFNQRGPLVKHGFARTLTWQADAAQAEVLAGDGLFLRLKLADTPQTRAVWPHSFETWLEVTLLPGRLDAELVVHNRGDTPLAFTAALHSYLRVADVEQCRLQGLDGLPYWDAVADTHPTQQGDVRFGEELDRVYPRPGKTMELDAPAGGLRISQDAAWSETVVWNPGPALCARLADMPPHGWRQMLCVEAAAIDAPVHVAPGAHWRAAQRLHKL</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2021-06-02" version="58" xmlns="http://uniprot.org/uniprot">
    <accession>A9BX84</accession>
    <name>A9BX84_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Sulfate transporter/antisigma-factor antagonist STAS</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_5531</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX38160.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012207329.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_5531"/>
    <dbReference type="EnsemblBacteria" id="ABX38160">
        <property type="protein sequence ID" value="ABX38160"/>
        <property type="gene ID" value="Daci_5531"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_5531"/>
    <dbReference type="eggNOG" id="COG3113">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_115403_13_5_4"/>
    <dbReference type="OMA" id="GPLTHRE"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.750.24">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002645">
        <property type="entry name" value="STAS_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036513">
        <property type="entry name" value="STAS_dom_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13466">
        <property type="entry name" value="STAS_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52091">
        <property type="entry name" value="SSF52091"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50801">
        <property type="entry name" value="STAS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="STAS" evidence="1">
        <location>
            <begin position="1"/>
            <end position="93"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS50801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX38160.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="93" mass="9872" checksum="6303E5531441AB94" modified="2008-01-15" version="1">MLQLPRELTYRQARSCLVQLRPQVQAFDGAQVRVDASGVEVFDSAALAVLLACRRTAKAADKQLVVVGLPQGLQSMAALYGVDGLLTDASSPS</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="50" xmlns="http://uniprot.org/uniprot">
    <accession>A9BXC5</accession>
    <name>A9BXC5_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Daci_5572</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="2" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX38201.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012207370.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_5572"/>
    <dbReference type="PRIDE" id="A9BXC5"/>
    <dbReference type="EnsemblBacteria" id="ABX38201">
        <property type="protein sequence ID" value="ABX38201"/>
        <property type="gene ID" value="Daci_5572"/>
    </dbReference>
    <dbReference type="GeneID" id="60689924"/>
    <dbReference type="KEGG" id="dac:Daci_5572"/>
    <dbReference type="eggNOG" id="COG3310">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_093792_0_0_4"/>
    <dbReference type="OMA" id="SPYPMLH"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009858">
        <property type="entry name" value="DUF1415"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07209">
        <property type="entry name" value="DUF1415"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ABX38201.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="206" mass="22689" checksum="926472AC8F7631BB" modified="2008-01-15" version="1">MTDTNHEIRAAEFPPVTVIEDTVHWLEKAVIGLNLCPFAKGVHIKGQIHYTVSQATDAEGVAADLHRELEALAEASPEKRDTTLLILPHALQEFLDFNDFLEVADAMVEELDLGGILQVASFHPQFQFEGTEADDVTNCTNRSPYPTLHLLREDSIDKAVEAFPEAESIYERNMETLEKIGIEGWLDMGVGARCPVAHAAKPGAAE</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="96" xmlns="http://uniprot.org/uniprot">
    <accession>A9BXK1</accession>
    <name>A9BXK1_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="6">GAF modulated sigma54 specific transcriptional regulator, Fis family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ordered locus">Daci_5649</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="7" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX38277.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012207446.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_5649"/>
    <dbReference type="PRIDE" id="A9BXK1"/>
    <dbReference type="EnsemblBacteria" id="ABX38277">
        <property type="protein sequence ID" value="ABX38277"/>
        <property type="gene ID" value="Daci_5649"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_5649"/>
    <dbReference type="eggNOG" id="COG3284">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_000445_8_12_4"/>
    <dbReference type="OMA" id="QFLTCSC"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043565">
        <property type="term" value="F:sequence-specific DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006355">
        <property type="term" value="P:regulation of transcription, DNA-templated"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.450.40">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003593">
        <property type="entry name" value="AAA+_ATPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003018">
        <property type="entry name" value="GAF"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029016">
        <property type="entry name" value="GAF-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009057">
        <property type="entry name" value="Homeobox-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002197">
        <property type="entry name" value="HTH_Fis"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002078">
        <property type="entry name" value="Sigma_54_int"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025662">
        <property type="entry name" value="Sigma_54_int_dom_ATP-bd_1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025943">
        <property type="entry name" value="Sigma_54_int_dom_ATP-bd_2"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01590">
        <property type="entry name" value="GAF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02954">
        <property type="entry name" value="HTH_8"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00158">
        <property type="entry name" value="Sigma54_activat"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR01590">
        <property type="entry name" value="HTHFIS"/>
    </dbReference>
    <dbReference type="SMART" id="SM00382">
        <property type="entry name" value="AAA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46689">
        <property type="entry name" value="SSF46689"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00675">
        <property type="entry name" value="SIGMA54_INTERACT_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00676">
        <property type="entry name" value="SIGMA54_INTERACT_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50045">
        <property type="entry name" value="SIGMA54_INTERACT_4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="1" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4" id="KW-0804">Transcription</keyword>
    <keyword evidence="3" id="KW-0805">Transcription regulation</keyword>
    <feature type="domain" description="Sigma-54 factor interaction" evidence="5">
        <location>
            <begin position="353"/>
            <end position="565"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023015"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023163"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="PROSITE" id="PS50045"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="ABX38277.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="653" mass="70861" checksum="B94D240786E84020" modified="2008-01-15" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="95" xmlns="http://uniprot.org/uniprot">
    <accession>A9BXM6</accession>
    <name>A9BXM6_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="7">Glucose-6-phosphate isomerase</fullName>
            <shortName evidence="7">GPI</shortName>
            <ecNumber evidence="7">5.3.1.9</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="7">Phosphoglucose isomerase</fullName>
            <shortName evidence="7">PGI</shortName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="7">Phosphohexose isomerase</fullName>
            <shortName evidence="7">PHI</shortName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="7" type="primary">pgi</name>
        <name evidence="9" type="ordered locus">Daci_5674</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="9 10" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="10" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="7">Catalyzes the reversible isomerization of glucose-6-phosphate to fructose-6-phosphate.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="6 7 8">
            <text>alpha-D-glucose 6-phosphate = beta-D-fructose 6-phosphate</text>
            <dbReference type="Rhea" id="RHEA:11816"/>
            <dbReference type="ChEBI" id="CHEBI:57634"/>
            <dbReference type="ChEBI" id="CHEBI:58225"/>
            <dbReference type="EC" id="5.3.1.9"/>
        </reaction>
    </comment>
    <comment type="pathway">
        <text evidence="7">Carbohydrate biosynthesis; gluconeogenesis.</text>
    </comment>
    <comment type="pathway">
        <text evidence="1 7 8">Carbohydrate degradation; glycolysis; D-glyceraldehyde 3-phosphate and glycerone phosphate from D-glucose: step 2/4.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="7">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2 7 8">Belongs to the GPI family.</text>
    </comment>
    <dbReference type="EC" id="5.3.1.9" evidence="7"/>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX38302.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012207471.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_5674"/>
    <dbReference type="PRIDE" id="A9BXM6"/>
    <dbReference type="EnsemblBacteria" id="ABX38302">
        <property type="protein sequence ID" value="ABX38302"/>
        <property type="gene ID" value="Daci_5674"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_5674"/>
    <dbReference type="eggNOG" id="COG0166">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_017947_3_1_4"/>
    <dbReference type="OMA" id="VERCKAM"/>
    <dbReference type="UniPathway" id="UPA00109">
        <property type="reaction ID" value="UER00181"/>
    </dbReference>
    <dbReference type="UniPathway" id="UPA00138"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0097367">
        <property type="term" value="F:carbohydrate derivative binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004347">
        <property type="term" value="F:glucose-6-phosphate isomerase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006094">
        <property type="term" value="P:gluconeogenesis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006096">
        <property type="term" value="P:glycolytic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd05015">
        <property type="entry name" value="SIS_PGI_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="CDD" id="cd05016">
        <property type="entry name" value="SIS_PGI_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.1390.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00473">
        <property type="entry name" value="G6P_isomerase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001672">
        <property type="entry name" value="G6P_Isomerase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023096">
        <property type="entry name" value="G6P_Isomerase_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018189">
        <property type="entry name" value="Phosphoglucose_isomerase_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR046348">
        <property type="entry name" value="SIS_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035476">
        <property type="entry name" value="SIS_PGI_1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035482">
        <property type="entry name" value="SIS_PGI_2"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11469">
        <property type="entry name" value="PTHR11469"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00342">
        <property type="entry name" value="PGI"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00662">
        <property type="entry name" value="G6PISOMERASE"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53697">
        <property type="entry name" value="SSF53697"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00765">
        <property type="entry name" value="P_GLUCOSE_ISOMERASE_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00174">
        <property type="entry name" value="P_GLUCOSE_ISOMERASE_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51463">
        <property type="entry name" value="P_GLUCOSE_ISOMERASE_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="7" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="3 7 8" id="KW-0312">Gluconeogenesis</keyword>
    <keyword evidence="4 7 8" id="KW-0324">Glycolysis</keyword>
    <keyword evidence="5 7 8" id="KW-0413">Isomerase</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <feature type="active site" description="Proton donor" evidence="7">
        <location>
            <position position="364"/>
        </location>
    </feature>
    <feature type="active site" evidence="7">
        <location>
            <position position="395"/>
        </location>
    </feature>
    <feature type="active site" evidence="7">
        <location>
            <position position="505"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004926"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00006604"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022432"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023152"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023235"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00029321"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00473"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="RuleBase" id="RU000612"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="ABX38302.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="540" mass="59114" checksum="CF064EDE5068F2EC" modified="2008-01-15" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="50" xmlns="http://uniprot.org/uniprot">
    <accession>A9BXR3</accession>
    <name>A9BXR3_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">CreA family protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_5711</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX38339.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_5711"/>
    <dbReference type="PRIDE" id="A9BXR3"/>
    <dbReference type="EnsemblBacteria" id="ABX38339">
        <property type="protein sequence ID" value="ABX38339"/>
        <property type="gene ID" value="Daci_5711"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_5711"/>
    <dbReference type="eggNOG" id="COG3045">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_109726_1_1_4"/>
    <dbReference type="OMA" id="QGVTCYV"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010292">
        <property type="entry name" value="Uncharacterised_CreA"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37952">
        <property type="entry name" value="PTHR37952"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF05981">
        <property type="entry name" value="CreA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF003174">
        <property type="entry name" value="CreA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="1">
        <location>
            <begin position="1"/>
            <end position="32"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5002736140" evidence="1">
        <location>
            <begin position="33"/>
            <end position="169"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX38339.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="169" mass="18169" checksum="E46685B7F5879B72" modified="2008-01-15" version="1">MIKPSVKYFPRGRALLTAALATLLLGACGARAEQVGAVDTVFKFIGPDHKIVVDAYDDPKVAGVTCYVSRAKTGGIKGGLGLAEDRAEASISCVQTGPIQIPAPLKQQDEVFTERISLLFKRLRVVRMVDAQRNTLVYMTYSDRVIEGSPQNSVTAVPVPRSTPIPLGK</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="104" xmlns="http://uniprot.org/uniprot">
    <accession>A9BXS6</accession>
    <name>A9BXS6_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="13">Heavy metal translocating P-type ATPase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="13" type="ordered locus">Daci_5724</name>
    </gene>
    <organism evidence="13 14">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="13 14" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="14">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="14" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="14">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="10">Cell membrane</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="1 10">Belongs to the cation transport ATPase (P-type) (TC 3.A.3) family. Type IB subfamily.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX38352.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012207521.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_5724"/>
    <dbReference type="PRIDE" id="A9BXS6"/>
    <dbReference type="EnsemblBacteria" id="ABX38352">
        <property type="protein sequence ID" value="ABX38352"/>
        <property type="gene ID" value="Daci_5724"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_5724"/>
    <dbReference type="eggNOG" id="COG2217">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_001771_0_3_4"/>
    <dbReference type="OMA" id="IEKTGYE"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016887">
        <property type="term" value="F:ATP hydrolysis activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0019829">
        <property type="term" value="F:ATPase-coupled cation transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005507">
        <property type="term" value="F:copper ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006825">
        <property type="term" value="P:copper ion transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd00371">
        <property type="entry name" value="HMA"/>
        <property type="match status" value="2"/>
    </dbReference>
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        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.1000">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023299">
        <property type="entry name" value="ATPase_P-typ_cyto_dom_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018303">
        <property type="entry name" value="ATPase_P-typ_P_site"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023298">
        <property type="entry name" value="ATPase_P-typ_TM_dom_sf"/>
    </dbReference>
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        <property type="entry name" value="ATPase_P-typ_transduc_dom_A_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036412">
        <property type="entry name" value="HAD-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023214">
        <property type="entry name" value="HAD_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017969">
        <property type="entry name" value="Heavy-metal-associated_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006122">
        <property type="entry name" value="HMA_Cu_ion-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006121">
        <property type="entry name" value="HMA_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036163">
        <property type="entry name" value="HMA_dom_sf"/>
    </dbReference>
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        <property type="entry name" value="P-typ_ATPase_IB"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001757">
        <property type="entry name" value="P_typ_ATPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR044492">
        <property type="entry name" value="P_typ_ATPase_HD_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00403">
        <property type="entry name" value="HMA"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00120">
        <property type="entry name" value="HATPASE"/>
    </dbReference>
    <dbReference type="SFLD" id="SFLDF00027">
        <property type="entry name" value="p-type_atpase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55008">
        <property type="entry name" value="SSF55008"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56784">
        <property type="entry name" value="SSF56784"/>
        <property type="match status" value="1"/>
    </dbReference>
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        <property type="entry name" value="SSF81653"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF81665">
        <property type="entry name" value="SSF81665"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01525">
        <property type="entry name" value="ATPase-IB_hvy"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01494">
        <property type="entry name" value="ATPase_P-type"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00003">
        <property type="entry name" value="TIGR00003"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00154">
        <property type="entry name" value="ATPASE_E1_E2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01047">
        <property type="entry name" value="HMA_1"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50846">
        <property type="entry name" value="HMA_2"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="10" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="8" id="KW-0186">Copper</keyword>
    <keyword evidence="5" id="KW-0187">Copper transport</keyword>
    <keyword evidence="5" id="KW-0406">Ion transport</keyword>
    <keyword evidence="9 10" id="KW-0472">Membrane</keyword>
    <keyword evidence="3 10" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="10" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="14" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4" id="KW-0677">Repeat</keyword>
    <keyword evidence="6" id="KW-1278">Translocase</keyword>
    <keyword evidence="2 10" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="7 10" id="KW-1133">Transmembrane helix</keyword>
    <keyword evidence="5" id="KW-0813">Transport</keyword>
    <feature type="transmembrane region" description="Helical" evidence="10">
        <location>
            <begin position="178"/>
            <end position="196"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="10">
        <location>
            <begin position="216"/>
            <end position="232"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="10">
        <location>
            <begin position="252"/>
            <end position="274"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="10">
        <location>
            <begin position="280"/>
            <end position="299"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="10">
        <location>
            <begin position="433"/>
            <end position="455"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="10">
        <location>
            <begin position="461"/>
            <end position="484"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="10">
        <location>
            <begin position="779"/>
            <end position="798"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="10">
        <location>
            <begin position="804"/>
            <end position="822"/>
        </location>
    </feature>
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        <location>
            <begin position="10"/>
            <end position="75"/>
        </location>
    </feature>
    <feature type="domain" description="HMA" evidence="12">
        <location>
            <begin position="77"/>
            <end position="142"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="11">
        <location>
            <begin position="144"/>
            <end position="169"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00006024"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
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        <source>
            <dbReference type="ARBA" id="ARBA00022737"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022796"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022967"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
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        <source>
            <dbReference type="ARBA" id="ARBA00023008"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="RuleBase" id="RU362081"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="12">
        <source>
            <dbReference type="PROSITE" id="PS50846"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="13">
        <source>
            <dbReference type="EMBL" id="ABX38352.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="14">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="839" mass="87255" checksum="26CE2022A7F2A0F3" modified="2008-01-15" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="71" xmlns="http://uniprot.org/uniprot">
    <accession>A9BXZ6</accession>
    <name>A9BXZ6_DELAS</name>
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        <submittedName>
            <fullName evidence="4">DNA binding domain protein, excisionase family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ordered locus">Daci_1287</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
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        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="5" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX33931.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012203217.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_1287"/>
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    <dbReference type="EnsemblBacteria" id="ABX33931">
        <property type="protein sequence ID" value="ABX33931"/>
        <property type="gene ID" value="Daci_1287"/>
    </dbReference>
    <dbReference type="GeneID" id="60685847"/>
    <dbReference type="KEGG" id="dac:Daci_1287"/>
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        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_037108_0_0_4"/>
    <dbReference type="OMA" id="AEVYFVN"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd03408">
        <property type="entry name" value="SPFH_like_u1"/>
        <property type="match status" value="1"/>
    </dbReference>
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        <property type="match status" value="1"/>
    </dbReference>
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        <property type="entry name" value="Band_7/SPFH_dom_sf"/>
    </dbReference>
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        <property type="entry name" value="HTH_17"/>
    </dbReference>
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        <property type="entry name" value="SinI_DNA-bd"/>
    </dbReference>
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        <property type="entry name" value="SPFH_YdjI"/>
    </dbReference>
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        <property type="match status" value="1"/>
    </dbReference>
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        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF117892">
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        <property type="match status" value="1"/>
    </dbReference>
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        <property type="entry name" value="excise"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Band_7_1" evidence="3">
        <location>
            <begin position="27"/>
            <end position="236"/>
        </location>
    </feature>
    <feature type="domain" description="HTH_17" evidence="2">
        <location>
            <begin position="323"/>
            <end position="370"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="283"/>
            <end position="304"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF12728"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF13421"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="ABX33931.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="371" mass="40154" checksum="EF2AF644641CB2C8" modified="2008-01-15" version="1">MNLMNIITKQLIEIIEWTDDSRDTLSYRWPDDDKEIKNGAQLIVRESQQVQFVSAGQYADLFSPGKHTLTTQNIPILSTIQGWKYGFNSPFKCDVYFINTRLFTGNKWGTSNPVMVRDKDFGAVRLRAFGTYDFRIVEPAKFLKEVAGTDQNFRIDEFADTMRSRIISVFTESLAKAQVPVLDVAQRYGELGDALLPLINPAMTDKYGLEITSFVLENVSVPPEVEQAIDKRSSMTAIGNLNDYVKYQMGQAMTTGGEGAAAATLPATMAMGFGMAQEMMKSMQNGGGGGAPAGQGQASDPFSPAAAQAAQAPAAPAAGGLQVLTPAQAAQVLGVSEADVLAEIQAGNLKARQIGSQWRIAQSALDEFLKG</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="43" xmlns="http://uniprot.org/uniprot">
    <accession>A9BYA1</accession>
    <name>A9BYA1_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Daci_1596</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="2" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX34240.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012203525.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_1596"/>
    <dbReference type="PRIDE" id="A9BYA1"/>
    <dbReference type="EnsemblBacteria" id="ABX34240">
        <property type="protein sequence ID" value="ABX34240"/>
        <property type="gene ID" value="Daci_1596"/>
    </dbReference>
    <dbReference type="GeneID" id="60686133"/>
    <dbReference type="KEGG" id="dac:Daci_1596"/>
    <dbReference type="eggNOG" id="COG3829">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_156416_0_0_4"/>
    <dbReference type="OMA" id="AMPTIES"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ABX34240.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="134" mass="14547" checksum="AB32D13658360030" modified="2008-01-15" version="1">MSLDNVLSEVAGSVPECLAIGYVDAASGMLLAIRTVDSHPREVIDLVAAATADLFNGPNVSMIESLFKKSRGLKDDGHHYFQELIVNSDNLIHVFLRGKLMPDYVAVFVCRRTANLGMALTKARMAMPKIEAAV</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="63" xmlns="http://uniprot.org/uniprot">
    <accession>A9BYG4</accession>
    <name>A9BYG4_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="8">Intradiol ring-cleavage dioxygenase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="8" type="ordered locus">Daci_1867</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="9" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>Fe(3+)</name>
            <dbReference type="ChEBI" id="CHEBI:29034"/>
        </cofactor>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the intradiol ring-cleavage dioxygenase family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX34507.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012203792.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_1867"/>
    <dbReference type="PRIDE" id="A9BYG4"/>
    <dbReference type="EnsemblBacteria" id="ABX34507">
        <property type="protein sequence ID" value="ABX34507"/>
        <property type="gene ID" value="Daci_1867"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_1867"/>
    <dbReference type="eggNOG" id="COG3485">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_046727_0_0_4"/>
    <dbReference type="OMA" id="HAVTYPE"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0018576">
        <property type="term" value="F:catechol 1,2-dioxygenase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008199">
        <property type="term" value="F:ferric iron binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009712">
        <property type="term" value="P:catechol-containing compound metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.130.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007535">
        <property type="entry name" value="Catechol_dOase_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000627">
        <property type="entry name" value="Intradiol_dOase_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015889">
        <property type="entry name" value="Intradiol_dOase_core"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00775">
        <property type="entry name" value="Dioxygenase_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04444">
        <property type="entry name" value="Dioxygenase_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF49482">
        <property type="entry name" value="SSF49482"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00083">
        <property type="entry name" value="INTRADIOL_DIOXYGENAS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4 8" id="KW-0223">Dioxygenase</keyword>
    <keyword evidence="6" id="KW-0408">Iron</keyword>
    <keyword evidence="3" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="5" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="INTRADIOL_DIOXYGENAS" evidence="7">
        <location>
            <begin position="130"/>
            <end position="158"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001965"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00007825"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022964"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023002"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023004"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="PROSITE" id="PS00083"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="ABX34507.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="304" mass="33500" checksum="4F48D681FC7FFCA4" modified="2008-01-15" version="1">MSELSQDQLLNLVNSKQIAPGSDRVRALTQRIVSDLFHTIDEMDVTPDEFWAAVDWLGRLGSSGQLGLITAGLGFDRLLDIRSDEADARAGRAGGTPRAIEGPLFVAGAPLSQAEVRLDEGEPQGEVFVMEGRVLDLDGRPLPHALIDVWHANVQGGYSHFFPGMKPYELRRRIEADDQGRYRFRSYVPPGYSIPPNSPTSELFDALGRHGHRPAHIHFLVVAPGMRTLTTQVNLPGDTYLDDDFAFATRDGLIVELERGVAPAGYESLGVNAPFVRTRFDFVLQPAVSEGESLPLTRMERVRA</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="66" xmlns="http://uniprot.org/uniprot">
    <accession>A9BYT4</accession>
    <name>A9BYT4_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="4">2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase</fullName>
            <ecNumber evidence="3">2.7.6.3</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="11">6-hydroxymethyl-7,8-dihydropterin pyrophosphokinase</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="12">7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="14" type="ordered locus">Daci_2189</name>
    </gene>
    <organism evidence="14 15">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="14 15" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="15">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="15" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="15">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="10">Catalyzes the transfer of pyrophosphate from adenosine triphosphate (ATP) to 6-hydroxymethyl-7,8-dihydropterin, an enzymatic step in folate biosynthesis pathway.</text>
    </comment>
    <comment type="pathway">
        <text evidence="1">Cofactor biosynthesis; tetrahydrofolate biosynthesis; 2-amino-4-hydroxy-6-hydroxymethyl-7,8-dihydropteridine diphosphate from 7,8-dihydroneopterin triphosphate: step 4/4.</text>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the HPPK family.</text>
    </comment>
    <dbReference type="EC" id="2.7.6.3" evidence="3"/>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX34829.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012204112.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_2189"/>
    <dbReference type="PRIDE" id="A9BYT4"/>
    <dbReference type="EnsemblBacteria" id="ABX34829">
        <property type="protein sequence ID" value="ABX34829"/>
        <property type="gene ID" value="Daci_2189"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_2189"/>
    <dbReference type="eggNOG" id="COG0801">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_097916_2_0_4"/>
    <dbReference type="OMA" id="QVILRQN"/>
    <dbReference type="UniPathway" id="UPA00077">
        <property type="reaction ID" value="UER00155"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003848">
        <property type="term" value="F:2-amino-4-hydroxy-6-hydroxymethyldihydropteridine diphosphokinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016301">
        <property type="term" value="F:kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046656">
        <property type="term" value="P:folic acid biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016310">
        <property type="term" value="P:phosphorylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046654">
        <property type="term" value="P:tetrahydrofolate biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniPathway"/>
    </dbReference>
    <dbReference type="CDD" id="cd00483">
        <property type="entry name" value="HPPK"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.70.560">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000550">
        <property type="entry name" value="Hppk"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035907">
        <property type="entry name" value="Hppk_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01288">
        <property type="entry name" value="HPPK"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55083">
        <property type="entry name" value="SSF55083"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01498">
        <property type="entry name" value="folK"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="8" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="9" id="KW-0289">Folate biosynthesis</keyword>
    <keyword evidence="7 14" id="KW-0418">Kinase</keyword>
    <keyword evidence="6" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="15" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="5 14" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="HPPK" evidence="13">
        <location>
            <begin position="16"/>
            <end position="142"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00005051"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00005810"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00013253"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00016218"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022777"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00022909"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00029409"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="ARBA" id="ARBA00029766"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="12">
        <source>
            <dbReference type="ARBA" id="ARBA00033413"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="13">
        <source>
            <dbReference type="Pfam" id="PF01288"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="14">
        <source>
            <dbReference type="EMBL" id="ABX34829.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="15">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="179" mass="18877" checksum="6F525D641D7CB6D3" modified="2008-01-15" version="1">MAPWAGMTEPGHWVAIGLGANLGDRGQALAQALQAIGGLPGTRLVAVSSLYSTAPVDSSGPDYLNAVAAVHTTLQPLALLDALQAIELAAGRERPYRNAPRTLDLDIELWDDERIALPRLSVPHPRMHERAFVLVPLAEIAPERITPAQLQAVAGQGIVRSAGPGWHLRDGGALANGSR</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="52" xmlns="http://uniprot.org/uniprot">
    <accession>A9BYT9</accession>
    <name>A9BYT9_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">DUF4124 domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="4" type="ordered locus">Daci_2194</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="5" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX34834.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012204117.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="PRIDE" id="A9BYT9"/>
    <dbReference type="EnsemblBacteria" id="ABX34834">
        <property type="protein sequence ID" value="ABX34834"/>
        <property type="gene ID" value="Daci_2194"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_2194"/>
    <dbReference type="eggNOG" id="ENOG5032T7F">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_1307977_0_0_4"/>
    <dbReference type="OMA" id="CLGPKAY"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025392">
        <property type="entry name" value="DUF4124"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13511">
        <property type="entry name" value="DUF4124"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="2">
        <location>
            <begin position="1"/>
            <end position="35"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5002736160" description="DUF4124 domain-containing protein" evidence="2">
        <location>
            <begin position="36"/>
            <end position="224"/>
        </location>
    </feature>
    <feature type="domain" description="DUF4124" evidence="3">
        <location>
            <begin position="24"/>
            <end position="79"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="51"/>
            <end position="130"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="68"/>
            <end position="121"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF13511"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="ABX34834.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="224" mass="24978" checksum="1D3011FCF293D673" modified="2008-01-15" version="1">MHRTQDLCQRPALVPMLVPMLATLMAALIAGPASAQVIRCTDAKTGRVTYTNSSCKDGENRVQVQEAPSPEELERERAQSAAAIERKNQQLAREEAERRTRAQQQEREARSRRERENSAQRDSGDSPACLQARRRLDTILAESNPDPATWGPRSQAAQQQMEMACLGPKAYEQLQQSRALQPNAINRPWIVGRPVPPQPLPPSAPISHCNVFRCYDTNGGIHPR</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="52" xmlns="http://uniprot.org/uniprot">
    <accession>A9BZ80</accession>
    <name>A9BZ80_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Integrase, catalytic region</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_2542</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX35180.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_2542"/>
    <dbReference type="PRIDE" id="A9BZ80"/>
    <dbReference type="EnsemblBacteria" id="ABX35180">
        <property type="protein sequence ID" value="ABX35180"/>
        <property type="gene ID" value="Daci_2542"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_2542"/>
    <dbReference type="eggNOG" id="COG2801">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_052819_5_2_4"/>
    <dbReference type="OMA" id="CHFKPKN"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015074">
        <property type="term" value="P:DNA integration"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001584">
        <property type="entry name" value="Integrase_cat-core"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012337">
        <property type="entry name" value="RNaseH-like_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13683">
        <property type="entry name" value="rve_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53098">
        <property type="entry name" value="SSF53098"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Integrase catalytic" evidence="1">
        <location>
            <begin position="13"/>
            <end position="42"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF13683"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX35180.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="60" mass="7072" checksum="CCB2934A1B1FA881" modified="2008-01-15" version="1">MNTFKRDYVARLDLKTVLAQLPAAFEQFNEVHPHSSLKMRSPREFRRQQAAGAYQLLYCE</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="51" xmlns="http://uniprot.org/uniprot">
    <accession>A9BZC9</accession>
    <name>A9BZC9_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_2891</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX35529.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012204739.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_2891"/>
    <dbReference type="PRIDE" id="A9BZC9"/>
    <dbReference type="EnsemblBacteria" id="ABX35529">
        <property type="protein sequence ID" value="ABX35529"/>
        <property type="gene ID" value="Daci_2891"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_2891"/>
    <dbReference type="eggNOG" id="ENOG502ZC9D">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_675777_0_0_4"/>
    <dbReference type="OMA" id="PRARWEF"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="1">
        <location>
            <begin position="1"/>
            <end position="23"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5002732684" evidence="1">
        <location>
            <begin position="24"/>
            <end position="412"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX35529.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="412" mass="44422" checksum="DC2567B07EEB45DA" modified="2008-01-15" version="1">MQRTFLAQCTPLAAAIAVVIALAAGGAAAHTLDDGIPQTNGLRIDMAAVAAYLHGDSTLPAPRLAGTLGLGDTPDDQRGWRLEHGTLGAGLRVSPQLGANIVMGWHDSDPAHVEAAWMEARSGSDAELTLGAGRNRVPMGQVLTRAGHFDRYGQMPLAKRAAFNGDWIEDGVNAAWRPHLQGAMSWLQGIDLGLWRARRFPGSDNAAWAPVVHANAAWTSVEADVFYSRMQPKGRGAYVQRSNSGHIHTAPQCNASLRDITCFDGTVDLAGASATWTTPLQGVKLTAAGIWRRESGNLYSQNGDTSYQGRTLGGWLEVLWQPRARWEFGARQEWLRSTNRVSGPGALLVATDANLLPNNPSRRFTAMAGWRPVKSVLIALEAGREHIAGKGNTVAGLRLIWTPDALLERNWK</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="78" xmlns="http://uniprot.org/uniprot">
    <accession>A9BZD0</accession>
    <name>A9BZD0_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="11">Cytochrome-c peroxidase</fullName>
            <ecNumber evidence="11">1.11.1.5</ecNumber>
        </submittedName>
    </protein>
    <gene>
        <name evidence="11" type="ordered locus">Daci_2892</name>
    </gene>
    <organism evidence="11 12">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="11 12" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="12">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="12" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="12">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="6">
            <name>heme</name>
            <dbReference type="ChEBI" id="CHEBI:30413"/>
        </cofactor>
        <text evidence="6">Binds 2 heme groups.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Periplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="PTM">
        <text evidence="6">Binds 2 heme groups per subunit.</text>
    </comment>
    <dbReference type="EC" id="1.11.1.5" evidence="11"/>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX35530.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012204740.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_2892"/>
    <dbReference type="PeroxiBase" id="4987">
        <property type="entry name" value="DacDiHPOX"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="ABX35530">
        <property type="protein sequence ID" value="ABX35530"/>
        <property type="gene ID" value="Daci_2892"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_2892"/>
    <dbReference type="eggNOG" id="COG1858">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_034652_3_1_4"/>
    <dbReference type="OMA" id="KGPINAP"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0042597">
        <property type="term" value="C:periplasmic space"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004130">
        <property type="term" value="F:cytochrome-c peroxidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009055">
        <property type="term" value="F:electron transfer activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0020037">
        <property type="term" value="F:heme binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.760.10">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009056">
        <property type="entry name" value="Cyt_c-like_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036909">
        <property type="entry name" value="Cyt_c-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004852">
        <property type="entry name" value="Di-haem_cyt_c_peroxidsae"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023929">
        <property type="entry name" value="Di-heme_enz_MXAN0977"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR026259">
        <property type="entry name" value="MauG/Cytc_peroxidase"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03150">
        <property type="entry name" value="CCP_MauG"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF000294">
        <property type="entry name" value="Cytochrome-c_peroxidase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46626">
        <property type="entry name" value="SSF46626"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR04039">
        <property type="entry name" value="MXAN_0977_Heme2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51007">
        <property type="entry name" value="CYTC"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2 6 8" id="KW-0349">Heme</keyword>
    <keyword evidence="5 7 8" id="KW-0408">Iron</keyword>
    <keyword evidence="3 7 8" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="11" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="4" id="KW-0574">Periplasm</keyword>
    <keyword evidence="11" id="KW-0575">Peroxidase</keyword>
    <keyword evidence="12" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="9" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="9">
        <location>
            <begin position="1"/>
            <end position="27"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5002736175" evidence="9">
        <location>
            <begin position="28"/>
            <end position="399"/>
        </location>
    </feature>
    <feature type="domain" description="Cytochrome c" evidence="10">
        <location>
            <begin position="68"/>
            <end position="175"/>
        </location>
    </feature>
    <feature type="domain" description="Cytochrome c" evidence="10">
        <location>
            <begin position="227"/>
            <end position="379"/>
        </location>
    </feature>
    <feature type="binding site" description="covalent" evidence="6">
        <location>
            <position position="90"/>
        </location>
        <ligand>
            <name>heme</name>
            <dbReference type="ChEBI" id="CHEBI:30413"/>
            <label>1</label>
        </ligand>
    </feature>
    <feature type="binding site" description="covalent" evidence="6">
        <location>
            <position position="93"/>
        </location>
        <ligand>
            <name>heme</name>
            <dbReference type="ChEBI" id="CHEBI:30413"/>
            <label>1</label>
        </ligand>
    </feature>
    <feature type="binding site" description="axial binding residue" evidence="7">
        <location>
            <position position="94"/>
        </location>
        <ligand>
            <name>heme</name>
            <dbReference type="ChEBI" id="CHEBI:30413"/>
            <label>1</label>
        </ligand>
        <ligandPart>
            <name>Fe</name>
            <dbReference type="ChEBI" id="CHEBI:18248"/>
        </ligandPart>
    </feature>
    <feature type="binding site" description="covalent" evidence="6">
        <location>
            <position position="243"/>
        </location>
        <ligand>
            <name>heme</name>
            <dbReference type="ChEBI" id="CHEBI:30413"/>
            <label>2</label>
        </ligand>
    </feature>
    <feature type="binding site" description="covalent" evidence="6">
        <location>
            <position position="246"/>
        </location>
        <ligand>
            <name>heme</name>
            <dbReference type="ChEBI" id="CHEBI:30413"/>
            <label>2</label>
        </ligand>
    </feature>
    <feature type="binding site" description="axial binding residue" evidence="7">
        <location>
            <position position="247"/>
        </location>
        <ligand>
            <name>heme</name>
            <dbReference type="ChEBI" id="CHEBI:30413"/>
            <label>2</label>
        </ligand>
        <ligandPart>
            <name>Fe</name>
            <dbReference type="ChEBI" id="CHEBI:18248"/>
        </ligandPart>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004418"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022617"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022764"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023004"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="PIRSR" id="PIRSR000294-1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="PIRSR" id="PIRSR000294-2"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00433"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="10">
        <source>
            <dbReference type="PROSITE" id="PS51007"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="EMBL" id="ABX35530.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="399" mass="43044" checksum="1A50E3C386E4FFA9" modified="2008-01-15" version="1">MHKPHSLRRVAAWTAALCGLAGAIALAGCGGGDTAVHDDSGSSTGWSWVLPSFFPTPKVPDSNPMTAEKAELGRFLFYDRRLSGNGTQACASCHIQSKAFTDGLTTSLGSTGHAHPRNAQSLANVVYNATLTWANPSLVTLEKQMETPLFGTDPVEMGVNDNNKEEILARLAADTGYGPRFARAYPGQAAPITWGNVIHAISAFQRTILSGNSKYDQYLKGSTALNPAEQRGMNLFFGEKAECFHCHSSFNFNDQIVHAGSRIVETPFHNTGLYNIGGTGAFPEPNRGVYELTQLFKDMGKFRAPSLRNVEVTGPYMHDGSIATLEEVLQFYAAGGRNITSGPHAGDGRANPNKNDFINQIALTADDRADLLAFLKTLTDHELLTNPRLADPFARQAGQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="37" xmlns="http://uniprot.org/uniprot">
    <accession>A9BZD2</accession>
    <name>A9BZD2_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Daci_2894</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="4" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX35532.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012204742.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_2894"/>
    <dbReference type="PRIDE" id="A9BZD2"/>
    <dbReference type="EnsemblBacteria" id="ABX35532">
        <property type="protein sequence ID" value="ABX35532"/>
        <property type="gene ID" value="Daci_2894"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_2894"/>
    <dbReference type="eggNOG" id="ENOG502ZNZC">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_1640997_0_0_4"/>
    <dbReference type="OMA" id="LAMEVCT"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR021333">
        <property type="entry name" value="DUF2946"/>
    </dbReference>
    <dbReference type="Pfam" id="PF11162">
        <property type="entry name" value="DUF2946"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="2" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="36"/>
            <end position="58"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="120"/>
            <end position="145"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ABX35532.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="161" mass="17032" checksum="7071479DE6ABE686" modified="2008-01-15" version="1">MRCSSLRIKRLVAFGPPAWPWALPGARQRRDQGRRFAAWMVAALLFAFVHPALAMVLASGQGSGDPLARLAMEVCTPLGLQQAQPVSAAGEPEADGQTTAAGQAHCPLCRVVGDAPPDLSRADLRFAAPPPPTPLPPQALRPRDTVLRVVLSTPPRAPPLS</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-05-25" version="47" xmlns="http://uniprot.org/uniprot">
    <accession>A9BZK1</accession>
    <name>A9BZK1_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">NfeD domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Daci_2963</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="4" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX35601.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012204811.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_2963"/>
    <dbReference type="EnsemblBacteria" id="ABX35601">
        <property type="protein sequence ID" value="ABX35601"/>
        <property type="gene ID" value="Daci_2963"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_2963"/>
    <dbReference type="eggNOG" id="COG1585">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_116732_0_0_4"/>
    <dbReference type="OMA" id="PYRGADW"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002810">
        <property type="entry name" value="NfeD-like_C"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01957">
        <property type="entry name" value="NfeD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="7"/>
            <end position="35"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="47"/>
            <end position="67"/>
        </location>
    </feature>
    <feature type="domain" description="NfeD" evidence="2">
        <location>
            <begin position="52"/>
            <end position="140"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF01957"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ABX35601.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="141" mass="15131" checksum="33BBC5E154DFEA2F" modified="2008-01-15" version="1">MEYSTIWWLVAGALVIAELLTGSFYLLMLALGAIVGALCAHAGLAPIAQIIIAAALGSAFVLACYLVRRRQPSRQPASSNRDVNLDIGESVMVEQWNSDGTAQVRYRGAQWTVIGRPGNLPSAGMHRVAEVVGNRLLVDKL</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="69" xmlns="http://uniprot.org/uniprot">
    <accession>A9BZP0</accession>
    <name>A9BZP0_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="7">Inner-membrane translocator</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ordered locus">Daci_3310</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="8" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX35948.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012205148.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_3310"/>
    <dbReference type="PRIDE" id="A9BZP0"/>
    <dbReference type="EnsemblBacteria" id="ABX35948">
        <property type="protein sequence ID" value="ABX35948"/>
        <property type="gene ID" value="Daci_3310"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_3310"/>
    <dbReference type="eggNOG" id="COG4177">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_031365_0_1_4"/>
    <dbReference type="OMA" id="FALSYNM"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015658">
        <property type="term" value="F:branched-chain amino acid transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd06581">
        <property type="entry name" value="TM_PBP1_LivM_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001851">
        <property type="entry name" value="ABC_transp_permease"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043428">
        <property type="entry name" value="LivM-like"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30482">
        <property type="entry name" value="PTHR30482"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02653">
        <property type="entry name" value="BPD_transp_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="5 6" id="KW-0472">Membrane</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 6" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="4 6" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="40"/>
            <end position="58"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="65"/>
            <end position="82"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="88"/>
            <end position="108"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="120"/>
            <end position="141"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="199"/>
            <end position="217"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="248"/>
            <end position="274"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="286"/>
            <end position="310"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="322"/>
            <end position="345"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="365"/>
            <end position="390"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="410"/>
            <end position="430"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="ABX35948.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="454" mass="48538" checksum="71C2091EA9F09CF4" modified="2008-01-15" version="1">MSSITKTTMTSTAAKGVPDASGAGGAGRHYSFQPLNIGRILIWGAFALALIVAPLVFTSSLALTMLSQIGYLIIICLSYNILLGQGGMLSFGHAVYTGLGSFIAIHAMNRASSGDWGIPLVLIPIIGGLGGMFFAALLGYVTTKKSGTTFAMITMGIGELVASMALMFPEFFGGEGGITTDRVYGKPFFGLTFGSGMEVYYLIAAYCFICTAAMFAFTGTPLGRMLNAVRDNPERVEFVGYNTQRVRYFSFIIAGFFAGVGGGLAAINFEIITAMDSVSVMRSGSYLLFTFLGGATFFFGPIIGAVLLVLASVLLSELTKAWLLYLGLVFLLMVMYAPGGVASLIMMNLRVARFGKWRRLAQPYLAIAASALVMIVGGAAIVEMIYHLQLNAALGPQVSFMGVQLDTSSASTWTVAVAIFVVGLGLLEVARRWCLRRWERIQEEIEEAIKRGEG</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="88" xmlns="http://uniprot.org/uniprot">
    <accession>A9BZP3</accession>
    <name>A9BZP3_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">3-hydroxyacyl-CoA dehydrogenase</fullName>
            <ecNumber evidence="2">1.1.1.35</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="10" type="ordered locus">Daci_3313</name>
    </gene>
    <organism evidence="10 11">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="10 11" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="11">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="11" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="11">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="7">
            <text>a (3S)-3-hydroxyacyl-CoA + NAD(+) = a 3-oxoacyl-CoA + H(+) + NADH</text>
            <dbReference type="Rhea" id="RHEA:22432"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:57318"/>
            <dbReference type="ChEBI" id="CHEBI:57540"/>
            <dbReference type="ChEBI" id="CHEBI:57945"/>
            <dbReference type="ChEBI" id="CHEBI:90726"/>
            <dbReference type="EC" id="1.1.1.35"/>
        </reaction>
    </comment>
    <comment type="pathway">
        <text evidence="1">Lipid metabolism; fatty acid beta-oxidation.</text>
    </comment>
    <dbReference type="EC" id="1.1.1.35" evidence="2"/>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX35951.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012205151.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_3313"/>
    <dbReference type="PRIDE" id="A9BZP3"/>
    <dbReference type="EnsemblBacteria" id="ABX35951">
        <property type="protein sequence ID" value="ABX35951"/>
        <property type="gene ID" value="Daci_3313"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_3313"/>
    <dbReference type="eggNOG" id="COG1024">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="eggNOG" id="COG1250">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_009834_16_3_4"/>
    <dbReference type="OMA" id="TGAGWPF"/>
    <dbReference type="UniPathway" id="UPA00659"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003857">
        <property type="term" value="F:3-hydroxyacyl-CoA dehydrogenase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0070403">
        <property type="term" value="F:NAD+ binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006635">
        <property type="term" value="P:fatty acid beta-oxidation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniPathway"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006176">
        <property type="entry name" value="3-OHacyl-CoA_DH_NAD-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006108">
        <property type="entry name" value="3HC_DH_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008927">
        <property type="entry name" value="6-PGluconate_DH-like_C_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029045">
        <property type="entry name" value="ClpP/crotonase-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001753">
        <property type="entry name" value="Enoyl-CoA_hydra/iso"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036291">
        <property type="entry name" value="NAD(P)-bd_dom_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00725">
        <property type="entry name" value="3HCDH"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02737">
        <property type="entry name" value="3HCDH_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00378">
        <property type="entry name" value="ECH_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48179">
        <property type="entry name" value="SSF48179"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51735">
        <property type="entry name" value="SSF51735"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52096">
        <property type="entry name" value="SSF52096"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-0276">Fatty acid metabolism</keyword>
    <keyword evidence="4" id="KW-0442">Lipid degradation</keyword>
    <keyword evidence="6" id="KW-0443">Lipid metabolism</keyword>
    <keyword evidence="5" id="KW-0520">NAD</keyword>
    <keyword evidence="11" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="3HCDH_N" evidence="9">
        <location>
            <begin position="303"/>
            <end position="479"/>
        </location>
    </feature>
    <feature type="domain" description="3HCDH" evidence="8">
        <location>
            <begin position="484"/>
            <end position="576"/>
        </location>
    </feature>
    <feature type="domain" description="3HCDH" evidence="8">
        <location>
            <begin position="612"/>
            <end position="700"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00005005"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00013000"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022832"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022963"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023027"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023098"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023693"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="Pfam" id="PF00725"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="9">
        <source>
            <dbReference type="Pfam" id="PF02737"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="EMBL" id="ABX35951.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="703" mass="75916" checksum="7DACF3FB3D4D145E" modified="2008-01-15" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="61" xmlns="http://uniprot.org/uniprot">
    <accession>A9C010</accession>
    <name>A9C010_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="4">ATPase associated with various cellular activities AAA_5</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ordered locus">Daci_3640</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="5" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the CbbQ/NirQ/NorQ/GpvN family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX36272.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012205468.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_3640"/>
    <dbReference type="PRIDE" id="A9C010"/>
    <dbReference type="EnsemblBacteria" id="ABX36272">
        <property type="protein sequence ID" value="ABX36272"/>
        <property type="gene ID" value="Daci_3640"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_3640"/>
    <dbReference type="eggNOG" id="COG0714">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_067562_0_0_4"/>
    <dbReference type="OMA" id="DINGTKW"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016887">
        <property type="term" value="F:ATP hydrolysis activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011704">
        <property type="entry name" value="ATPase_dyneun-rel_AAA"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013615">
        <property type="entry name" value="CbbQ_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07728">
        <property type="entry name" value="AAA_5"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08406">
        <property type="entry name" value="CbbQ_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="AAA_5" evidence="2">
        <location>
            <begin position="51"/>
            <end position="185"/>
        </location>
    </feature>
    <feature type="domain" description="CbbQ_C" evidence="3">
        <location>
            <begin position="198"/>
            <end position="281"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00009417"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF07728"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF08406"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="ABX36272.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="285" mass="31319" checksum="9EC9B8B7B0449B54" modified="2008-01-15" version="1">MSTTTITGPLHAPANQAADPLAAYRIEEEPFYRPSGREVQLYRQAYQHRMPLILKGPTGCGKTRFVEYMAWALKRPLVTLACNEDMTASDLVGRYLLDADGTAWHDGPLTLAVRHGGICYLDEVVEARQDTTVVIHPLTDARRALPLDKKGEVVHAHPDFQLVVSYNPGYQSSAKDMKPSTRQRFAALDFDYPAPEIEADIVAHETGISPATARSLVSLARSTRELRHRGLDEGASTRMLIYAGLLMRDGVSVHDSCDMTITSALTDDPDTAAALRQLVEAEFGA</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2021-09-29" version="34" xmlns="http://uniprot.org/uniprot">
    <accession>A9C075</accession>
    <name>A9C075_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_4010</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX36641.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_4010"/>
    <dbReference type="EnsemblBacteria" id="ABX36641">
        <property type="protein sequence ID" value="ABX36641"/>
        <property type="gene ID" value="Daci_4010"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_4010"/>
    <dbReference type="HOGENOM" id="CLU_3024303_0_0_4"/>
    <dbReference type="OMA" id="FGREHFT"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="44"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX36641.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="56" mass="6163" checksum="DC1545FEBABED9D6" modified="2008-01-15" version="1">MNTPPSRDPVLTEHTFGRDHFSPPPMALEQAGQDHEAAGGGIPLDLDQRIRNVGEW</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="59" xmlns="http://uniprot.org/uniprot">
    <accession>A9C0Q5</accession>
    <name>A9C0Q5_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Glyoxalase/bleomycin resistance protein/dioxygenase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_4499</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX37128.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012206298.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_4499"/>
    <dbReference type="PRIDE" id="A9C0Q5"/>
    <dbReference type="EnsemblBacteria" id="ABX37128">
        <property type="protein sequence ID" value="ABX37128"/>
        <property type="gene ID" value="Daci_4499"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_4499"/>
    <dbReference type="eggNOG" id="COG3607">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_046006_21_0_4"/>
    <dbReference type="OMA" id="FMYGHGF"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051213">
        <property type="term" value="F:dioxygenase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.10.180.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029068">
        <property type="entry name" value="Glyas_Bleomycin-R_OHBP_Dase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037523">
        <property type="entry name" value="VOC"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54593">
        <property type="entry name" value="SSF54593"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51819">
        <property type="entry name" value="VOC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0223">Dioxygenase</keyword>
    <keyword evidence="2" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="VOC" evidence="1">
        <location>
            <begin position="3"/>
            <end position="127"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS51819"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX37128.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="137" mass="14617" checksum="7C0590A9902AE007" modified="2008-01-15" version="1">MTKSLFISLPVTDLAASTAFYKALGFSQNPQFSSEDGSAMVWSEAIQVILVTHAKWRTFTQRPLPPAGSCGLMLSLALESRAAVDAMNEAAAAHGGQADVNPMEDHGFMYTRDLADPDGHMWAALWMDPAAMPASAG</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="51" xmlns="http://uniprot.org/uniprot">
    <accession>A9C0S3</accession>
    <name>A9C0S3_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Band 7 protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ordered locus">Daci_5758</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="5" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX38386.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012207555.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_5758"/>
    <dbReference type="PRIDE" id="A9C0S3"/>
    <dbReference type="EnsemblBacteria" id="ABX38386">
        <property type="protein sequence ID" value="ABX38386"/>
        <property type="gene ID" value="Daci_5758"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_5758"/>
    <dbReference type="eggNOG" id="COG0330">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_069124_0_0_4"/>
    <dbReference type="OMA" id="ATVTYRI"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.479.30">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001107">
        <property type="entry name" value="Band_7"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036013">
        <property type="entry name" value="Band_7/SPFH_dom_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01145">
        <property type="entry name" value="Band_7"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF117892">
        <property type="entry name" value="SSF117892"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="PHB" evidence="3">
        <location>
            <begin position="18"/>
            <end position="188"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="336"/>
            <end position="357"/>
        </location>
    </feature>
    <feature type="coiled-coil region" evidence="1">
        <location>
            <begin position="215"/>
            <end position="242"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF01145"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="ABX38386.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="357" mass="39002" checksum="ECEB6CA54F9DEB2F" modified="2008-01-15" version="1">MFGIRFIKSQPTVHLMQFRAGKVVREGAGQSFFYYAPTTTLVAVPVGSQDCHFMLELVTADFQSVTVQGQVTYRISTPRQTATLMDFSLARDGQKYLSEDPQRLGDRVTMQAEVIIQQAVQALELKQALRSSALIARTAQQELAAQPEIEALGLEILGVSVMAVKPTPDIARALEAEARESNLKAADDAVYARRMAAVENERAIRQNELDTDVAVEKKKRQIREAQLEAKAAQMRKENELRAEQMSADVALETSRRDFVEGQAANSRTLAEAEAYRVGAVMQALEKADPRIVQSLAAVGMQPGQLIAQAFGGIAEKAERIGQLNVSPELLQSLMGAGAGHAAAVADPEPARSRRERQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="68" xmlns="http://uniprot.org/uniprot">
    <accession>A9C1G4</accession>
    <name>A9C1G4_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Trk system potassium uptake protein TrkA</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="8" type="ordered locus">Daci_5999</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="9" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX38627.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012207796.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_5999"/>
    <dbReference type="PRIDE" id="A9C1G4"/>
    <dbReference type="EnsemblBacteria" id="ABX38627">
        <property type="protein sequence ID" value="ABX38627"/>
        <property type="gene ID" value="Daci_5999"/>
    </dbReference>
    <dbReference type="GeneID" id="60690360"/>
    <dbReference type="KEGG" id="dac:Daci_5999"/>
    <dbReference type="eggNOG" id="COG0569">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_046525_0_2_4"/>
    <dbReference type="OMA" id="IACQVAY"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015079">
        <property type="term" value="F:potassium ion transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.70.1450">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006036">
        <property type="entry name" value="K_uptake_TrkA"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036291">
        <property type="entry name" value="NAD(P)-bd_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006037">
        <property type="entry name" value="RCK_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036721">
        <property type="entry name" value="RCK_C_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003148">
        <property type="entry name" value="RCK_N"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02080">
        <property type="entry name" value="TrkA_C"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02254">
        <property type="entry name" value="TrkA_N"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00335">
        <property type="entry name" value="KUPTAKETRKA"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF116726">
        <property type="entry name" value="SSF116726"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51735">
        <property type="entry name" value="SSF51735"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51202">
        <property type="entry name" value="RCK_C"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51201">
        <property type="entry name" value="RCK_N"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="5" id="KW-0406">Ion transport</keyword>
    <keyword evidence="4" id="KW-0520">NAD</keyword>
    <keyword evidence="3" id="KW-0630">Potassium</keyword>
    <keyword evidence="2" id="KW-0633">Potassium transport</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="5" id="KW-0813">Transport</keyword>
    <feature type="domain" description="RCK N-terminal" evidence="6">
        <location>
            <begin position="2"/>
            <end position="126"/>
        </location>
    </feature>
    <feature type="domain" description="RCK C-terminal" evidence="7">
        <location>
            <begin position="142"/>
            <end position="231"/>
        </location>
    </feature>
    <feature type="domain" description="RCK N-terminal" evidence="6">
        <location>
            <begin position="242"/>
            <end position="366"/>
        </location>
    </feature>
    <feature type="domain" description="RCK C-terminal" evidence="7">
        <location>
            <begin position="380"/>
            <end position="480"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00017378"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022538"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022958"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023027"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023065"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="PROSITE" id="PS51201"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="PROSITE" id="PS51202"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="ABX38627.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="485" mass="53229" checksum="96E1D188A41662AA" modified="2008-01-15" version="1">MKIIILGAGRVGYSVAESLVSERNDITVIDTDARRLRELESRFDLRGVVGNGIDPQVLAEAGAKDTDLLIACAALDETNLVCCKLAQVLFEIPTRIARVRSSGFGDDETLLGKEGFGVDRIICPEESLTNYISKLIEFPEAMQVRAFAGGRAALASVRARDGAPAVGKHIGELRDCMPELAMRIVAIYRRFLEEPDRFVRCDGNTRIEPGDEVFILAAREHVAEVLRAIHQPAGRPSRPVYRIMIAGGDQVSLRLALQLSRVPGRFHIKIIEPDEQRCQDLASLLPAEVLVLHGDATDEDLLADESVEDVDLFLALTDDDENNIMASLLGKRMGARRVLSLITRRAYADLMHGTQIDIALSPAQAMLGELLAYVRRGDVQAVHSLRRGVAEALEIVARGDRKSSRVVGRKVEDLRVPEDAHIGLIVRGIPEGVPADEIAAGAEPEVIIPRGNTVIESGDHVVFFLPHKRLVRDVENLFRVSATFF</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="82" xmlns="http://uniprot.org/uniprot">
    <accession>A9C1H7</accession>
    <name>A9C1H7_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="4">RNA polymerase, sigma-24 subunit, ECF subfamily</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ordered locus">Daci_6012</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="5" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="subunit">
        <text evidence="1">Interacts transiently with the RNA polymerase catalytic core formed by RpoA, RpoB, RpoC and RpoZ (2 alpha, 1 beta, 1 beta' and 1 omega subunit) to form the RNA polymerase holoenzyme that can initiate transcription.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX38640.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012207809.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_6012"/>
    <dbReference type="PRIDE" id="A9C1H7"/>
    <dbReference type="EnsemblBacteria" id="ABX38640">
        <property type="protein sequence ID" value="ABX38640"/>
        <property type="gene ID" value="Daci_6012"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_6012"/>
    <dbReference type="eggNOG" id="COG1595">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_047691_22_0_4"/>
    <dbReference type="OMA" id="IRWMGAD"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016987">
        <property type="term" value="F:sigma factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006352">
        <property type="term" value="P:DNA-templated transcription, initiation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0050896">
        <property type="term" value="P:response to stimulus"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR032710">
        <property type="entry name" value="NTF2-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014284">
        <property type="entry name" value="RNA_pol_sigma-70_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007627">
        <property type="entry name" value="RNA_pol_sigma70_r2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013249">
        <property type="entry name" value="RNA_pol_sigma70_r4_t2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013325">
        <property type="entry name" value="RNA_pol_sigma_r2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013324">
        <property type="entry name" value="RNA_pol_sigma_r3/r4-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04542">
        <property type="entry name" value="Sigma70_r2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08281">
        <property type="entry name" value="Sigma70_r4_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54427">
        <property type="entry name" value="SSF54427"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF88659">
        <property type="entry name" value="SSF88659"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF88946">
        <property type="entry name" value="SSF88946"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR02937">
        <property type="entry name" value="sigma70-ECF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Sigma70_r2" evidence="2">
        <location>
            <begin position="13"/>
            <end position="77"/>
        </location>
    </feature>
    <feature type="domain" description="Sigma70_r4_2" evidence="3">
        <location>
            <begin position="117"/>
            <end position="167"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00011344"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF04542"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF08281"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="ABX38640.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="313" mass="34787" checksum="B0FFA4356475BC30" modified="2008-01-15" version="1">MQTSSATDDPLALFERHRPRLFGLAYRMLGQRADAEDLVQEAWLRWHGAERAGIEQPEAWLVSVTTRLAIDRLRRLRAEREHYQGFWLPEPLVQPWAEEAAPSAEDLLERAHDVSTALMFVLEQLTPDERAAFLLREIFDADYAEVAQALGRSEAACRQLVHRARSHVQAGRPRFAAPPEAHAALLQRFAQAVQGGNFAQIQALFAPDAELISDGGGKVPSFGRVLETGRRLALLYFATTRRMRRNGQQQSLHLARVNGLPGLLRCIDGELESVQTLLVEDGLIRCIYTLRNPDKLAGVAVPAPLPFPAGPAA</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="101" xmlns="http://uniprot.org/uniprot">
    <accession>A9C1I2</accession>
    <name>A9C1I2_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">Histidine kinase</fullName>
            <ecNumber evidence="2">2.7.13.3</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="11" type="ordered locus">Daci_6017</name>
    </gene>
    <organism evidence="11 12">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="11 12" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="12">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="12" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="12">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>ATP + protein L-histidine = ADP + protein N-phospho-L-histidine.</text>
            <dbReference type="EC" id="2.7.13.3"/>
        </reaction>
    </comment>
    <dbReference type="EC" id="2.7.13.3" evidence="2"/>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX38645.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_6017"/>
    <dbReference type="PRIDE" id="A9C1I2"/>
    <dbReference type="EnsemblBacteria" id="ABX38645">
        <property type="protein sequence ID" value="ABX38645"/>
        <property type="gene ID" value="Daci_6017"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_6017"/>
    <dbReference type="eggNOG" id="COG0784">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="eggNOG" id="COG3300">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="eggNOG" id="COG5000">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="eggNOG" id="COG5002">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_000445_114_35_4"/>
    <dbReference type="OMA" id="WPMVFIS"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000155">
        <property type="term" value="F:phosphorelay sensor kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006355">
        <property type="term" value="P:regulation of transcription, DNA-templated"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd00082">
        <property type="entry name" value="HisKA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="CDD" id="cd00130">
        <property type="entry name" value="PAS"/>
        <property type="match status" value="3"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.565.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011006">
        <property type="entry name" value="CheY-like_superfamily"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003594">
        <property type="entry name" value="HATPase_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036890">
        <property type="entry name" value="HATPase_C_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005467">
        <property type="entry name" value="His_kinase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003661">
        <property type="entry name" value="HisK_dim/P"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036097">
        <property type="entry name" value="HisK_dim/P_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005330">
        <property type="entry name" value="MHYT_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001610">
        <property type="entry name" value="PAC"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000014">
        <property type="entry name" value="PAS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000700">
        <property type="entry name" value="PAS-assoc_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035965">
        <property type="entry name" value="PAS-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013656">
        <property type="entry name" value="PAS_4"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013767">
        <property type="entry name" value="PAS_fold"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013655">
        <property type="entry name" value="PAS_fold_3"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004358">
        <property type="entry name" value="Sig_transdc_His_kin-like_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001789">
        <property type="entry name" value="Sig_transdc_resp-reg_receiver"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02518">
        <property type="entry name" value="HATPase_c"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00512">
        <property type="entry name" value="HisKA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03707">
        <property type="entry name" value="MHYT"/>
        <property type="match status" value="3"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00989">
        <property type="entry name" value="PAS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08447">
        <property type="entry name" value="PAS_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08448">
        <property type="entry name" value="PAS_4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00072">
        <property type="entry name" value="Response_reg"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00344">
        <property type="entry name" value="BCTRLSENSOR"/>
    </dbReference>
    <dbReference type="SMART" id="SM00387">
        <property type="entry name" value="HATPase_c"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00388">
        <property type="entry name" value="HisKA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00086">
        <property type="entry name" value="PAC"/>
        <property type="match status" value="3"/>
    </dbReference>
    <dbReference type="SMART" id="SM00091">
        <property type="entry name" value="PAS"/>
        <property type="match status" value="3"/>
    </dbReference>
    <dbReference type="SMART" id="SM00448">
        <property type="entry name" value="REC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47384">
        <property type="entry name" value="SSF47384"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52172">
        <property type="entry name" value="SSF52172"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55785">
        <property type="entry name" value="SSF55785"/>
        <property type="match status" value="3"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55874">
        <property type="entry name" value="SSF55874"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00229">
        <property type="entry name" value="sensory_box"/>
        <property type="match status" value="3"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50109">
        <property type="entry name" value="HIS_KIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50924">
        <property type="entry name" value="MHYT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50113">
        <property type="entry name" value="PAC"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50112">
        <property type="entry name" value="PAS"/>
        <property type="match status" value="3"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50110">
        <property type="entry name" value="RESPONSE_REGULATORY"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="11" id="KW-0418">Kinase</keyword>
    <keyword evidence="5" id="KW-0472">Membrane</keyword>
    <keyword evidence="3 4" id="KW-0597">Phosphoprotein</keyword>
    <keyword evidence="12" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="11" id="KW-0808">Transferase</keyword>
    <keyword evidence="5" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="5" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="20"/>
            <end position="47"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="59"/>
            <end position="81"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="93"/>
            <end position="110"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="122"/>
            <end position="144"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="156"/>
            <end position="177"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="189"/>
            <end position="210"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="230"/>
            <end position="252"/>
        </location>
    </feature>
    <feature type="domain" description="MHYT" evidence="10">
        <location>
            <begin position="21"/>
            <end position="213"/>
        </location>
    </feature>
    <feature type="domain" description="PAS" evidence="8">
        <location>
            <begin position="264"/>
            <end position="316"/>
        </location>
    </feature>
    <feature type="domain" description="PAS" evidence="8">
        <location>
            <begin position="392"/>
            <end position="466"/>
        </location>
    </feature>
    <feature type="domain" description="PAC" evidence="9">
        <location>
            <begin position="469"/>
            <end position="521"/>
        </location>
    </feature>
    <feature type="domain" description="PAS" evidence="8">
        <location>
            <begin position="536"/>
            <end position="562"/>
        </location>
    </feature>
    <feature type="domain" description="PAC" evidence="9">
        <location>
            <begin position="591"/>
            <end position="643"/>
        </location>
    </feature>
    <feature type="domain" description="Histidine kinase" evidence="6">
        <location>
            <begin position="661"/>
            <end position="877"/>
        </location>
    </feature>
    <feature type="domain" description="Response regulatory" evidence="7">
        <location>
            <begin position="896"/>
            <end position="1017"/>
        </location>
    </feature>
    <feature type="modified residue" description="4-aspartylphosphate" evidence="4">
        <location>
            <position position="947"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00000085"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00012438"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022553"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00169"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00244"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="PROSITE" id="PS50109"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="PROSITE" id="PS50110"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="PROSITE" id="PS50112"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="9">
        <source>
            <dbReference type="PROSITE" id="PS50113"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="10">
        <source>
            <dbReference type="PROSITE" id="PS50924"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="EMBL" id="ABX38645.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="1044" mass="114915" checksum="9EDD465CCDB7000B" modified="2008-01-15" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="88" xmlns="http://uniprot.org/uniprot">
    <accession>A9C1J8</accession>
    <name>A9C1J8_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="6">Ribosomal RNA small subunit methyltransferase A</fullName>
            <ecNumber evidence="6">2.1.1.182</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="6">16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="6">16S rRNA dimethyladenosine transferase</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="6">16S rRNA dimethylase</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="6">S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="6" type="primary">rsmA</name>
        <name evidence="6" type="synonym">ksgA</name>
        <name evidence="9" type="ordered locus">Daci_6033</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="9 10" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="10" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="6">Specifically dimethylates two adjacent adenosines (A1518 and A1519) in the loop of a conserved hairpin near the 3'-end of 16S rRNA in the 30S particle. May play a critical role in biogenesis of 30S subunits.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="6">
            <text>adenosine(1518)/adenosine(1519) in 16S rRNA + 4 S-adenosyl-L-methionine = 4 H(+) + N(6)-dimethyladenosine(1518)/N(6)-dimethyladenosine(1519) in 16S rRNA + 4 S-adenosyl-L-homocysteine</text>
            <dbReference type="Rhea" id="RHEA:19609"/>
            <dbReference type="Rhea" id="RHEA-COMP:10232"/>
            <dbReference type="Rhea" id="RHEA-COMP:10233"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:57856"/>
            <dbReference type="ChEBI" id="CHEBI:59789"/>
            <dbReference type="ChEBI" id="CHEBI:74411"/>
            <dbReference type="ChEBI" id="CHEBI:74493"/>
            <dbReference type="EC" id="2.1.1.182"/>
        </reaction>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="6">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="6">Belongs to the class I-like SAM-binding methyltransferase superfamily. rRNA adenine N(6)-methyltransferase family. RsmA subfamily.</text>
    </comment>
    <dbReference type="EC" id="2.1.1.182" evidence="6"/>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX38661.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_6033"/>
    <dbReference type="PRIDE" id="A9C1J8"/>
    <dbReference type="EnsemblBacteria" id="ABX38661">
        <property type="protein sequence ID" value="ABX38661"/>
        <property type="gene ID" value="Daci_6033"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_6033"/>
    <dbReference type="eggNOG" id="COG0030">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_041220_0_1_4"/>
    <dbReference type="OMA" id="KEEEPYF"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0052908">
        <property type="term" value="F:16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003723">
        <property type="term" value="F:RNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.8.100">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.150">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00607">
        <property type="entry name" value="16SrRNA_methyltr_A"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001737">
        <property type="entry name" value="KsgA/Erm"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023165">
        <property type="entry name" value="rRNA_Ade_diMease-like_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020598">
        <property type="entry name" value="rRNA_Ade_methylase_Trfase_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011530">
        <property type="entry name" value="rRNA_adenine_dimethylase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029063">
        <property type="entry name" value="SAM-dependent_MTases_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11727">
        <property type="entry name" value="PTHR11727"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00398">
        <property type="entry name" value="RrnaAD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00650">
        <property type="entry name" value="rADc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53335">
        <property type="entry name" value="SSF53335"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00755">
        <property type="entry name" value="ksgA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51689">
        <property type="entry name" value="SAM_RNA_A_N6_MT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="6" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="2 6 7" id="KW-0489">Methyltransferase</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="5 6 7" id="KW-0694">RNA-binding</keyword>
    <keyword evidence="1 6" id="KW-0698">rRNA processing</keyword>
    <keyword evidence="4 6 7" id="KW-0949">S-adenosyl-L-methionine</keyword>
    <keyword evidence="3 6 7" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="rADc" evidence="8">
        <location>
            <begin position="32"/>
            <end position="202"/>
        </location>
    </feature>
    <feature type="binding site" evidence="6 7">
        <location>
            <position position="25"/>
        </location>
        <ligand>
            <name>S-adenosyl-L-methionine</name>
            <dbReference type="ChEBI" id="CHEBI:59789"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="6 7">
        <location>
            <position position="27"/>
        </location>
        <ligand>
            <name>S-adenosyl-L-methionine</name>
            <dbReference type="ChEBI" id="CHEBI:59789"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="6 7">
        <location>
            <position position="52"/>
        </location>
        <ligand>
            <name>S-adenosyl-L-methionine</name>
            <dbReference type="ChEBI" id="CHEBI:59789"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="6 7">
        <location>
            <position position="73"/>
        </location>
        <ligand>
            <name>S-adenosyl-L-methionine</name>
            <dbReference type="ChEBI" id="CHEBI:59789"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="6 7">
        <location>
            <position position="94"/>
        </location>
        <ligand>
            <name>S-adenosyl-L-methionine</name>
            <dbReference type="ChEBI" id="CHEBI:59789"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="6 7">
        <location>
            <position position="117"/>
        </location>
        <ligand>
            <name>S-adenosyl-L-methionine</name>
            <dbReference type="ChEBI" id="CHEBI:59789"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022552"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022603"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022691"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022884"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00607"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU01026"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="SMART" id="SM00650"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="ABX38661.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="268" mass="30183" checksum="A6B461DD32DBBB61" modified="2008-01-15" version="1">MEGGAMAHRLAFSMKHIPRKRFGQNFLTDDGIIDGIVSAIDPRPGQSMVEIGPGLMALTQPLVERLGRLTVIELDRDLAVRLRLHEQLDVVESDVLKVDFRAIAARLGVPKLRIAGNLPYNISSPILFHLLEQVDVVEDQHFMLQKEVIDRMVASPSTAAYGRLTVMLQWRYAMESVLYVPPESFNPPPKVDSAVVRMVPRESPAALDAKLLEEMVQVAFSQRRKILRNTLGRWLEAKGFDGEFDLQRRAEEVPVSEYEALAARFTRA</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="41" xmlns="http://uniprot.org/uniprot">
    <accession>A9C1R2</accession>
    <name>A9C1R2_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Daci_2609</name>
        <name evidence="2" type="ordered locus">Daci_2643</name>
    </gene>
    <organism evidence="1 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
            <strain evidence="1">SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="1" key="3">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX35247.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX35281.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012204526.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="PRIDE" id="A9C1R2"/>
    <dbReference type="EnsemblBacteria" id="ABX35247">
        <property type="protein sequence ID" value="ABX35247"/>
        <property type="gene ID" value="Daci_2609"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="ABX35281">
        <property type="protein sequence ID" value="ABX35281"/>
        <property type="gene ID" value="Daci_2643"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_2609"/>
    <dbReference type="KEGG" id="dac:Daci_2643"/>
    <dbReference type="HOGENOM" id="CLU_2715706_0_0_4"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ABX35247.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX35281.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="72" mass="7562" checksum="AD27EB9B0D1661CA" modified="2008-01-15" version="1">MQHQIETVRDDVESASEQVAAICELLAAARGTAVHASAITALLLPVSRKLSAAAGDLSDHLHRSQVVGSKRC</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="81" xmlns="http://uniprot.org/uniprot">
    <accession>A9C1X8</accession>
    <name>A9C1X8_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="9">ABC transporter related</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="9" type="ordered locus">Daci_2976</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="9 10" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="10" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX35614.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012204824.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_2976"/>
    <dbReference type="PRIDE" id="A9C1X8"/>
    <dbReference type="EnsemblBacteria" id="ABX35614">
        <property type="protein sequence ID" value="ABX35614"/>
        <property type="gene ID" value="Daci_2976"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_2976"/>
    <dbReference type="eggNOG" id="COG4172">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_000604_86_2_4"/>
    <dbReference type="OMA" id="RVCVMQR"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015833">
        <property type="term" value="P:peptide transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003593">
        <property type="entry name" value="AAA+_ATPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003439">
        <property type="entry name" value="ABC_transporter-like_ATP-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017871">
        <property type="entry name" value="ABC_transporter-like_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013563">
        <property type="entry name" value="Oligopep_ABC_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00005">
        <property type="entry name" value="ABC_tran"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08352">
        <property type="entry name" value="oligo_HPY"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00382">
        <property type="entry name" value="AAA"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00211">
        <property type="entry name" value="ABC_TRANSPORTER_1"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50893">
        <property type="entry name" value="ABC_TRANSPORTER_2"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4 7" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="2" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="6" id="KW-0472">Membrane</keyword>
    <keyword evidence="3 7" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="5" id="KW-1278">Translocase</keyword>
    <keyword evidence="1" id="KW-0813">Transport</keyword>
    <feature type="domain" description="ABC transporter" evidence="8">
        <location>
            <begin position="21"/>
            <end position="265"/>
        </location>
    </feature>
    <feature type="domain" description="ABC transporter" evidence="8">
        <location>
            <begin position="289"/>
            <end position="548"/>
        </location>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <begin position="53"/>
            <end position="60"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <begin position="334"/>
            <end position="341"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022448"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022967"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00434"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="PROSITE" id="PS50893"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="ABX35614.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="562" mass="60540" checksum="4C2976CD64A43070" modified="2008-01-15" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="89" xmlns="http://uniprot.org/uniprot">
    <accession>A9C2J1</accession>
    <name>A9C2J1_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">Acetylornithine aminotransferase</fullName>
            <shortName evidence="2">ACOAT</shortName>
            <ecNumber evidence="2">2.6.1.11</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="primary">argD</name>
        <name evidence="4" type="ordered locus">Daci_3708</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="5" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="2">
            <text>2-oxoglutarate + N(2)-acetyl-L-ornithine = L-glutamate + N-acetyl-L-glutamate 5-semialdehyde</text>
            <dbReference type="Rhea" id="RHEA:18049"/>
            <dbReference type="ChEBI" id="CHEBI:16810"/>
            <dbReference type="ChEBI" id="CHEBI:29123"/>
            <dbReference type="ChEBI" id="CHEBI:29985"/>
            <dbReference type="ChEBI" id="CHEBI:57805"/>
            <dbReference type="EC" id="2.6.1.11"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="2">
            <name>pyridoxal 5'-phosphate</name>
            <dbReference type="ChEBI" id="CHEBI:597326"/>
        </cofactor>
        <text evidence="2">Binds 1 pyridoxal phosphate per subunit.</text>
    </comment>
    <comment type="pathway">
        <text evidence="2">Amino-acid biosynthesis; L-arginine biosynthesis; N(2)-acetyl-L-ornithine from L-glutamate: step 4/4.</text>
    </comment>
    <comment type="subunit">
        <text evidence="2">Homodimer.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="2">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="miscellaneous">
        <text evidence="2">May also have succinyldiaminopimelate aminotransferase activity, thus carrying out the corresponding step in lysine biosynthesis.</text>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. ArgD subfamily.</text>
    </comment>
    <dbReference type="EC" id="2.6.1.11" evidence="2"/>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX36340.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_3708"/>
    <dbReference type="PRIDE" id="A9C2J1"/>
    <dbReference type="EnsemblBacteria" id="ABX36340">
        <property type="protein sequence ID" value="ABX36340"/>
        <property type="gene ID" value="Daci_3708"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_3708"/>
    <dbReference type="eggNOG" id="COG4992">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_016922_10_1_4"/>
    <dbReference type="OMA" id="PFMVPTY"/>
    <dbReference type="UniPathway" id="UPA00068">
        <property type="reaction ID" value="UER00109"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003992">
        <property type="term" value="F:N2-acetyl-L-ornithine:2-oxoglutarate 5-aminotransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030170">
        <property type="term" value="F:pyridoxal phosphate binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006526">
        <property type="term" value="P:arginine biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd00610">
        <property type="entry name" value="OAT_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.640.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.1150.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01107">
        <property type="entry name" value="ArgD_aminotrans_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004636">
        <property type="entry name" value="AcOrn/SuccOrn_fam"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005814">
        <property type="entry name" value="Aminotrans_3"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015424">
        <property type="entry name" value="PyrdxlP-dep_Trfase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015421">
        <property type="entry name" value="PyrdxlP-dep_Trfase_major"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015422">
        <property type="entry name" value="PyrdxlP-dep_Trfase_small"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00202">
        <property type="entry name" value="Aminotran_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF000521">
        <property type="entry name" value="Transaminase_4ab_Lys_Orn"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53383">
        <property type="entry name" value="SSF53383"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00707">
        <property type="entry name" value="argD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00600">
        <property type="entry name" value="AA_TRANSFER_CLASS_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2" id="KW-0028">Amino-acid biosynthesis</keyword>
    <keyword evidence="2 4" id="KW-0032">Aminotransferase</keyword>
    <keyword evidence="2" id="KW-0055">Arginine biosynthesis</keyword>
    <keyword evidence="2" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="1 2 3" id="KW-0663">Pyridoxal phosphate</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 4" id="KW-0808">Transferase</keyword>
    <feature type="region of interest" description="Pyridoxal phosphate binding" evidence="2">
        <location>
            <begin position="103"/>
            <end position="104"/>
        </location>
    </feature>
    <feature type="region of interest" description="Pyridoxal phosphate binding" evidence="2">
        <location>
            <begin position="222"/>
            <end position="225"/>
        </location>
    </feature>
    <feature type="binding site" evidence="2">
        <location>
            <position position="135"/>
        </location>
        <ligand>
            <name>pyridoxal 5'-phosphate</name>
            <dbReference type="ChEBI" id="CHEBI:597326"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="2">
        <location>
            <position position="138"/>
        </location>
        <ligand>
            <name>N(2)-acetyl-L-ornithine</name>
            <dbReference type="ChEBI" id="CHEBI:57805"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="2">
        <location>
            <position position="279"/>
        </location>
        <ligand>
            <name>N(2)-acetyl-L-ornithine</name>
            <dbReference type="ChEBI" id="CHEBI:57805"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="2">
        <location>
            <position position="280"/>
        </location>
        <ligand>
            <name>pyridoxal 5'-phosphate</name>
            <dbReference type="ChEBI" id="CHEBI:597326"/>
        </ligand>
    </feature>
    <feature type="modified residue" description="N6-(pyridoxal phosphate)lysine" evidence="2">
        <location>
            <position position="251"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022898"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01107"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="RuleBase" id="RU003560"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="ABX36340.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="412" mass="44091" checksum="6142A251F1262E27" modified="2008-01-15" version="1">MQKAMQPLDSRLMKAYARQPVSFVRGRGARLWDEHGTEYLDAIAGVAVTSLGHAHPEIAAVIAEQAGLLLHTSNVFRIDWQERLGQRLCALAGMETAFFCNSGAEANEAALKLARLHGHRRQVARPQILVMDNGFHGRTLATLSATGNPAKQRGFEPLMPGFVRVPYDDIAAVHHAAAQHGDIVAVLIEPVQGEGGIRLASPDYLRQLRSLCDRHGWLLMLDEIQTGLGRTGAWFGHQHAGIAPDVMTLAKALGNGIPIGACLARGPAADLISPGQHGSTFGGNPLACRVGCTVLDIMESEDIPGRARQLGRRLLNGLQQALHGHPDVLAVRGQGLMVGIELNRNCQDLVGRALAQQRLLITVTRESTIRLLPPLICDERQIDDIVTRLACLLESASAAQAGAPAAGQLAAA</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="31" xmlns="http://uniprot.org/uniprot">
    <accession>A9C2V3</accession>
    <name>A9C2V3_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_4126</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX36757.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012205941.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_4126"/>
    <dbReference type="PRIDE" id="A9C2V3"/>
    <dbReference type="EnsemblBacteria" id="ABX36757">
        <property type="protein sequence ID" value="ABX36757"/>
        <property type="gene ID" value="Daci_4126"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_4126"/>
    <dbReference type="HOGENOM" id="CLU_2507182_0_0_4"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="57"/>
            <end position="85"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="63"/>
            <end position="85"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX36757.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="85" mass="9661" checksum="9B8E6F4E870BFFA3" modified="2008-01-15" version="1">MARKYEVTAVTGKYTDSNGQEKNRYLTIGAVIEGRNGLMLKLEAVPMGWDGWAYLNEPKPRDGHQSTPARQGRNEYQDARDDIPY</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="52" xmlns="http://uniprot.org/uniprot">
    <accession>A9C315</accession>
    <name>A9C315_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Daci_4188</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="2" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX36819.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012205993.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_4188"/>
    <dbReference type="PRIDE" id="A9C315"/>
    <dbReference type="EnsemblBacteria" id="ABX36819">
        <property type="protein sequence ID" value="ABX36819"/>
        <property type="gene ID" value="Daci_4188"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_4188"/>
    <dbReference type="eggNOG" id="ENOG502ZB6Z">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_137758_0_0_4"/>
    <dbReference type="OMA" id="TLLFHDN"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0110001">
        <property type="term" value="C:toxin-antitoxin complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004540">
        <property type="term" value="F:ribonuclease activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR021679">
        <property type="entry name" value="Toxin_endonuclease_YhaV"/>
    </dbReference>
    <dbReference type="Pfam" id="PF11663">
        <property type="entry name" value="Toxin_YhaV"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ABX36819.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="152" mass="17717" checksum="FC1F7E0CAA115020" modified="2008-01-15" version="1">MQQHGWSLLFHDNLIEQMMKLRAAVLRAQENDPEGFGSNANVKFFRALVQLMQDVVPSDPARDEYRQGNTMGSAYRHWRRAKLGRRYRLFFRYDSKAKVIVYAWVNDEQTLRSSGSKSDPYAVFEKMLGRGNPPDEWSALVQASKQDWSKLE</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="65" xmlns="http://uniprot.org/uniprot">
    <accession>A9C394</accession>
    <name>A9C394_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Glutathione S-transferase domain</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_4576</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX37205.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012206375.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_4576"/>
    <dbReference type="PRIDE" id="A9C394"/>
    <dbReference type="EnsemblBacteria" id="ABX37205">
        <property type="protein sequence ID" value="ABX37205"/>
        <property type="gene ID" value="Daci_4576"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_4576"/>
    <dbReference type="eggNOG" id="COG0625">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_090620_0_0_4"/>
    <dbReference type="OMA" id="HLDRFKY"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016740">
        <property type="term" value="F:transferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006749">
        <property type="term" value="P:glutathione metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036282">
        <property type="entry name" value="Glutathione-S-Trfase_C_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR040079">
        <property type="entry name" value="Glutathione_S-Trfase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004045">
        <property type="entry name" value="Glutathione_S-Trfase_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036249">
        <property type="entry name" value="Thioredoxin-like_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13417">
        <property type="entry name" value="GST_N_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SFLD" id="SFLDS00019">
        <property type="entry name" value="Glutathione_Transferase_(cytos"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47616">
        <property type="entry name" value="SSF47616"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52833">
        <property type="entry name" value="SSF52833"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50404">
        <property type="entry name" value="GST_NTER"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="GST N-terminal" evidence="1">
        <location>
            <begin position="4"/>
            <end position="81"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS50404"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX37205.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="221" mass="24833" checksum="184D3E2A17252293" modified="2008-01-15" version="1">MTQTLPVLYSFRRCPYAIRARLALAHAGLACELREINLRNKPQALLDASPKGTVPVLEDGRVIEQSLDVMLHALRANDPDGWLAPTSGSLQDMLALIERNDGFFKHALDRCKYPERYTAEEVNHAQADALTWLAELDDQLEATGYLFGQNPSLADMALRPFVRQYARIDESQWNEQPWPHLQAWLQRWIDSALFAEVMETYPGWVPGTRGPVFAAGGVGSD</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="82" xmlns="http://uniprot.org/uniprot">
    <accession>A9C3A4</accession>
    <name>A9C3A4_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="15">Disulfide bond formation protein B</fullName>
        </recommendedName>
        <alternativeName>
            <fullName evidence="15">Disulfide oxidoreductase</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="15" type="primary">dsbB</name>
        <name evidence="17" type="ordered locus">Daci_4586</name>
    </gene>
    <organism evidence="17 18">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="17 18" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="18">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="18" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="18">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="15">Required for disulfide bond formation in some periplasmic proteins. Acts by oxidizing the DsbA protein.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="2 15">Cell inner membrane</location>
            <topology evidence="2 15">Multi-pass membrane protein</topology>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="3 15">Belongs to the DsbB family.</text>
    </comment>
    <comment type="caution">
        <text evidence="15">Lacks conserved residue(s) required for the propagation of feature annotation.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX37215.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012206385.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_4586"/>
    <dbReference type="PRIDE" id="A9C3A4"/>
    <dbReference type="EnsemblBacteria" id="ABX37215">
        <property type="protein sequence ID" value="ABX37215"/>
        <property type="gene ID" value="Daci_4586"/>
    </dbReference>
    <dbReference type="GeneID" id="60688882"/>
    <dbReference type="KEGG" id="dac:Daci_4586"/>
    <dbReference type="eggNOG" id="COG1495">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_098660_1_0_4"/>
    <dbReference type="OMA" id="YRFRTLA"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009055">
        <property type="term" value="F:electron transfer activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015035">
        <property type="term" value="F:protein-disulfide reductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006457">
        <property type="term" value="P:protein folding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.1550.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00286">
        <property type="entry name" value="DsbB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003752">
        <property type="entry name" value="DiS_bond_form_DsbB/BdbC"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR022920">
        <property type="entry name" value="Disulphide_bond_form_DsbB"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023380">
        <property type="entry name" value="DsbB-like_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02600">
        <property type="entry name" value="DsbB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF158442">
        <property type="entry name" value="SSF158442"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="6 15" id="KW-0997">Cell inner membrane</keyword>
    <keyword evidence="5 15" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="13 15" id="KW-0143">Chaperone</keyword>
    <keyword evidence="12 15" id="KW-1015">Disulfide bond</keyword>
    <keyword evidence="8 15" id="KW-0249">Electron transport</keyword>
    <keyword evidence="11 15 16" id="KW-0472">Membrane</keyword>
    <keyword evidence="10 15" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="14 15" id="KW-0676">Redox-active center</keyword>
    <keyword evidence="18" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="7 15 16" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="9 15 16" id="KW-1133">Transmembrane helix</keyword>
    <keyword evidence="4 15" id="KW-0813">Transport</keyword>
    <feature type="topological domain" description="Cytoplasmic" evidence="15">
        <location>
            <begin position="1"/>
            <end position="12"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="16">
        <location>
            <begin position="12"/>
            <end position="31"/>
        </location>
    </feature>
    <feature type="topological domain" description="Periplasmic" evidence="15">
        <location>
            <begin position="30"/>
            <end position="47"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="16">
        <location>
            <begin position="43"/>
            <end position="61"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="16">
        <location>
            <begin position="68"/>
            <end position="87"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="16">
        <location>
            <begin position="141"/>
            <end position="161"/>
        </location>
    </feature>
    <feature type="topological domain" description="Cytoplasmic" evidence="15">
        <location>
            <begin position="163"/>
            <end position="168"/>
        </location>
    </feature>
    <feature type="disulfide bond" description="Redox-active" evidence="15">
        <location>
            <begin position="39"/>
            <end position="42"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00004429"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00008823"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022448"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022519"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00022982"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00023002"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="12">
        <source>
            <dbReference type="ARBA" id="ARBA00023157"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="13">
        <source>
            <dbReference type="ARBA" id="ARBA00023186"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="14">
        <source>
            <dbReference type="ARBA" id="ARBA00023284"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="15">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00286"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="16">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="17">
        <source>
            <dbReference type="EMBL" id="ABX37215.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="18">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="168" mass="18394" checksum="92065988F5275133" modified="2008-01-15" version="1">MLQWFDNAPRRILALISLACVAMLAFGMYLQHVVGLEPCPMCIVQRYALIGVALFTGLGSVRGGRGWLISWGVLALVAAGFGAFVAARQSWLQWYPPEFATCGRDFYGMIENYSISRAVPMIFRGSGDCAAVDWSFLGGSIANWSFICFAIMSVAVLVLLVRGAARRR</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2021-06-02" version="57" xmlns="http://uniprot.org/uniprot">
    <accession>A9C3A9</accession>
    <name>A9C3A9_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_4591</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX37220.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012206390.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_4591"/>
    <dbReference type="EnsemblBacteria" id="ABX37220">
        <property type="protein sequence ID" value="ABX37220"/>
        <property type="gene ID" value="Daci_4591"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_4591"/>
    <dbReference type="eggNOG" id="COG3545">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_088863_2_1_4"/>
    <dbReference type="OMA" id="GWQGSPD"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016787">
        <property type="term" value="F:hydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.1820">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029058">
        <property type="entry name" value="AB_hydrolase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010662">
        <property type="entry name" value="Hydrolase_RBBP9/YdeN"/>
    </dbReference>
    <dbReference type="Pfam" id="PF06821">
        <property type="entry name" value="Ser_hydrolase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53474">
        <property type="entry name" value="SSF53474"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="177"/>
            <end position="216"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX37220.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="216" mass="23281" checksum="A7B35EB996A73822" modified="2008-01-15" version="1">MNPHRIIIVPGWRNSGPDHWQSLWAQQLPHAERVEQDDWLVPHRDPWVAALEQLVLSRPEPVVLAAHSLGCITAAHLGPEASARVRGALLVAPADPERRAQLADFAPVPYAPLPYRSVLVASSNDPYCPIRRAGAYARAWGSEFVRLQNAGHINVESGFGDWPLGLALLQSLMQGDSWQPAQPRPAVRSPRSPRVAAAHASVSAGTGAGAPWAAGL</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="72" xmlns="http://uniprot.org/uniprot">
    <accession>A9C3B7</accession>
    <name>A9C3B7_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="8">ABC transporter related</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="8" type="ordered locus">Daci_4599</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="9" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX37228.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_4599"/>
    <dbReference type="PRIDE" id="A9C3B7"/>
    <dbReference type="EnsemblBacteria" id="ABX37228">
        <property type="protein sequence ID" value="ABX37228"/>
        <property type="gene ID" value="Daci_4599"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_4599"/>
    <dbReference type="eggNOG" id="COG1122">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_000604_1_22_4"/>
    <dbReference type="OMA" id="ANDQLFM"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0055085">
        <property type="term" value="P:transmembrane transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd03225">
        <property type="entry name" value="ABC_cobalt_CbiO_domain1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003593">
        <property type="entry name" value="AAA+_ATPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003439">
        <property type="entry name" value="ABC_transporter-like_ATP-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015856">
        <property type="entry name" value="ABC_transpr_CbiO/EcfA_su"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00005">
        <property type="entry name" value="ABC_tran"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00382">
        <property type="entry name" value="AAA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50893">
        <property type="entry name" value="ABC_TRANSPORTER_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3 6" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="1" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="5" id="KW-0472">Membrane</keyword>
    <keyword evidence="2 6" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4" id="KW-1278">Translocase</keyword>
    <feature type="domain" description="ABC transporter" evidence="7">
        <location>
            <begin position="53"/>
            <end position="279"/>
        </location>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <begin position="84"/>
            <end position="91"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022967"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00434"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="PROSITE" id="PS50893"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="ABX37228.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="282" mass="30466" checksum="41E621169F2C1BF4" modified="2008-01-15" version="1">MYGLDGIARIRPRQACTTARSLAVACITGKCPLSFAMPESSRTADRPASTASLRVEAVRLRRGITTVFDGLDLRLDEPRVGLIGDNGAGKTSLFRLLCGLDAPEAGRVLLDGTELHEARAQRPGQVGLMFQNPDDQIIFPTVEEELALGLRPSGISRREATERARALLASRGLADWAPRAVAGLSQGQRQQVCWLALLIAAPRVLLLDEPFASLDLPGQARLARDIAAAEQQVLVSTHVLDHVRSFGRVLWLERGKVRADGPGHGVCAAYEADVARRLQAQD</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="81" xmlns="http://uniprot.org/uniprot">
    <accession>A9C3D3</accession>
    <name>A9C3D3_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="4">Translation initiation factor IF-3</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="4" type="primary">infC</name>
        <name evidence="8" type="ordered locus">Daci_4615</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="9" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="4">IF-3 binds to the 30S ribosomal subunit and shifts the equilibrum between 70S ribosomes and their 50S and 30S subunits in favor of the free subunits, thus enhancing the availability of 30S subunits on which protein synthesis initiation begins.</text>
    </comment>
    <comment type="subunit">
        <text evidence="4">Monomer.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="4">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="1 4">Belongs to the IF-3 family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX37244.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_4615"/>
    <dbReference type="PRIDE" id="A9C3D3"/>
    <dbReference type="EnsemblBacteria" id="ABX37244">
        <property type="protein sequence ID" value="ABX37244"/>
        <property type="gene ID" value="Daci_4615"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_4615"/>
    <dbReference type="eggNOG" id="COG0290">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_054919_3_0_4"/>
    <dbReference type="OMA" id="RNMIMFL"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003743">
        <property type="term" value="F:translation initiation factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.10.20.80">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.110.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00080">
        <property type="entry name" value="IF_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036788">
        <property type="entry name" value="T_IF-3_C_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036787">
        <property type="entry name" value="T_IF-3_N_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001288">
        <property type="entry name" value="Translation_initiation_fac_3"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019815">
        <property type="entry name" value="Translation_initiation_fac_3_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019814">
        <property type="entry name" value="Translation_initiation_fac_3_N"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10938">
        <property type="entry name" value="PTHR10938"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00707">
        <property type="entry name" value="IF3_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF05198">
        <property type="entry name" value="IF3_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54364">
        <property type="entry name" value="SSF54364"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55200">
        <property type="entry name" value="SSF55200"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00168">
        <property type="entry name" value="infC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="2 4 8" id="KW-0396">Initiation factor</keyword>
    <keyword evidence="3 4" id="KW-0648">Protein biosynthesis</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="IF3_N" evidence="7">
        <location>
            <begin position="21"/>
            <end position="90"/>
        </location>
    </feature>
    <feature type="domain" description="IF3_C" evidence="6">
        <location>
            <begin position="97"/>
            <end position="181"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="5">
        <location>
            <begin position="183"/>
            <end position="205"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00005439"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022540"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022917"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00080"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="Pfam" id="PF00707"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="Pfam" id="PF05198"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="ABX37244.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="205" mass="23256" checksum="268E5DF8B1A6D41F" modified="2008-01-15" version="1">MRTIATEFRDRRHREERKHRLNREIMAPEVRLSGPENEPLGIVPLQEALRMAGELDVDLVEIAATATPPVCRLMDYGKFKYLEQKKAAEAKAKQTVIEIKEVKFRPGTDDGDYNIKLRNIRRFLADGDKCKITLRFRGREITHQQIGLDLLNRLRDDLADSIQVEQFPKLEGRQMVMMIAPARKKPTAGGKPAEVSAAPAVADKA</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="58" xmlns="http://uniprot.org/uniprot">
    <accession>A9BLI3</accession>
    <name>A9BLI3_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_3837</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX36468.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012205662.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_3837"/>
    <dbReference type="PRIDE" id="A9BLI3"/>
    <dbReference type="EnsemblBacteria" id="ABX36468">
        <property type="protein sequence ID" value="ABX36468"/>
        <property type="gene ID" value="Daci_3837"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_3837"/>
    <dbReference type="eggNOG" id="COG3157">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_112762_0_3_4"/>
    <dbReference type="OMA" id="FMKIDGA"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.30.110.20">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036624">
        <property type="entry name" value="Hcp1-lik_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008514">
        <property type="entry name" value="T6SS_Hcp"/>
    </dbReference>
    <dbReference type="Pfam" id="PF05638">
        <property type="entry name" value="T6SS_HCP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF141452">
        <property type="entry name" value="SSF141452"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="140"/>
            <end position="160"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX36468.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="160" mass="17050" checksum="249796CC947B3AC9" modified="2008-01-15" version="1">MSVDMFMKVEGASGESQDSNHKGWTDIDSFTWGATQPNTMSSGGGAGAGKVSFHDLNVIAKVDKCYPAVLKHCATGKHLGQVDISLCKAGGTQIEFTKITLTDVMVTNVTVSGANSSDTVTVNYSFQAAKVKTQYWEQTNQGGKGAESQMGFNIKENREA</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2021-06-02" version="40" xmlns="http://uniprot.org/uniprot">
    <accession>A9BLR2</accession>
    <name>A9BLR2_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_4220</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX36851.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012206023.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_4220"/>
    <dbReference type="EnsemblBacteria" id="ABX36851">
        <property type="protein sequence ID" value="ABX36851"/>
        <property type="gene ID" value="Daci_4220"/>
    </dbReference>
    <dbReference type="GeneID" id="60688473"/>
    <dbReference type="KEGG" id="dac:Daci_4220"/>
    <dbReference type="eggNOG" id="ENOG503309S">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_160551_0_0_4"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="1">
        <location>
            <begin position="1"/>
            <end position="42"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5002732287" evidence="1">
        <location>
            <begin position="43"/>
            <end position="128"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX36851.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="128" mass="14006" checksum="9245DFC95D9E69E4" modified="2008-01-15" version="1">MRAAASHGLACFSRPTPLSHMPLLPRFSLVLACLALPAFVHAADFDKKNCTYKGIRLYGKVQIVHSFPDIKVQATSSFPDLKVKVVDSFADSCGEWKIVTSFPDFKVQMVSSFPDLKVDMGSSSPGVR</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="49" xmlns="http://uniprot.org/uniprot">
    <accession>A9BLS7</accession>
    <name>A9BLS7_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_4235</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the UPF0751 family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX36866.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_4235"/>
    <dbReference type="EnsemblBacteria" id="ABX36866">
        <property type="protein sequence ID" value="ABX36866"/>
        <property type="gene ID" value="Daci_4235"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_4235"/>
    <dbReference type="eggNOG" id="ENOG5032RG4">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_090623_0_0_4"/>
    <dbReference type="OMA" id="ICQTGCL"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016772">
        <property type="entry name" value="UCP020408"/>
    </dbReference>
    <dbReference type="Pfam" id="PF10087">
        <property type="entry name" value="DUF2325"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00007189"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX36866.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="209" mass="23829" checksum="EDCA187872FF4C2C" modified="2008-01-15" version="1">MLRFAEETMTQTLDDIQQLAHEHQVLLRGYGHAQLRSSELLCLQAQEIERLQRLVIRQRAALMAKETQLLWAREEREALEKAIPGLSRRVTLARRVESLLVRVQDLLRERARWQRQTAAPLAQPAMPAREPEQDAEAFEASLREADLVICQTGCLSHGEYWRVQDHCQRTGKTCVLVEQPDALRIVRIHRGAEGGDNPAMTLTHGDTTA</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="55" xmlns="http://uniprot.org/uniprot">
    <accession>A9BLV5</accession>
    <name>A9BLV5_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Daci_4263</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="2" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX36894.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012206066.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_4263"/>
    <dbReference type="PRIDE" id="A9BLV5"/>
    <dbReference type="EnsemblBacteria" id="ABX36894">
        <property type="protein sequence ID" value="ABX36894"/>
        <property type="gene ID" value="Daci_4263"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_4263"/>
    <dbReference type="eggNOG" id="COG4544">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_064653_1_0_4"/>
    <dbReference type="OMA" id="CGAVLCW"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ABX36894.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="294" mass="31299" checksum="0D77DD0F4195FB9D" modified="2008-01-15" version="1">MTTPHASQTAQPALMAGAARVLPQLQGVWRGDGWQQALQQRVQPSGHALLDAQLPGGGWPLGAMVELLQPAHGHAEWPLLLPGLAALMQRSAGQVVLVAPPCRPFAPGLEAAGVAAHRLCCVEADTHPGAHPGAHPAGDGAGLAWVCEQALRCRDVLAVLAWLPAGLPMATLRRLQWAAAAQGRILWLWREASAALQTVASPAPLRLRVETELGEPGEGGTPACLRVQLLKRRGPALEHPLKLPLHHWAWQDVLQAQAQRRTRQADEAQRWLHGHGQLLPAEAPALQAAAHTLG</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-01-19" version="56" xmlns="http://uniprot.org/uniprot">
    <accession>A9BLW1</accession>
    <name>A9BLW1_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">SnoaL-like domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_4269</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX36900.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012206072.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_4269"/>
    <dbReference type="EnsemblBacteria" id="ABX36900">
        <property type="protein sequence ID" value="ABX36900"/>
        <property type="gene ID" value="Daci_4269"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_4269"/>
    <dbReference type="eggNOG" id="COG3631">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_119884_2_0_4"/>
    <dbReference type="OMA" id="FKPYPGK"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR032710">
        <property type="entry name" value="NTF2-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037401">
        <property type="entry name" value="SnoaL-like"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12680">
        <property type="entry name" value="SnoaL_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54427">
        <property type="entry name" value="SSF54427"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="SnoaL-like" evidence="1">
        <location>
            <begin position="19"/>
            <end position="113"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF12680"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX36900.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="146" mass="15949" checksum="8644A75D6A4757A1" modified="2008-01-15" version="1">MSQPPKNAHPAVARSLQLWHRMVAASDLGELHTIVHPDAVFRSPMANTPYASAPALMLALSTVVQVFENFAYHRQMASDDGLDVVLEFSASVGGKNLKGIDFIRFDEQGLIREFEVMVRPMSGLQALGTEMGKRLGDKLPAFKAVA</sequence>
</entry>
<entry dataset="Swiss-Prot" created="2009-04-14" modified="2022-08-03" version="80" xmlns="http://uniprot.org/uniprot">
    <accession>A9BME9</accession>
    <name>ILVC_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Ketol-acid reductoisomerase (NADP(+))</fullName>
            <shortName evidence="1">KARI</shortName>
            <ecNumber evidence="1">1.1.1.86</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="1">Acetohydroxy-acid isomeroreductase</fullName>
            <shortName evidence="1">AHIR</shortName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="1">Alpha-keto-beta-hydroxylacyl reductoisomerase</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="1">Ketol-acid reductoisomerase type 1</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="1">Ketol-acid reductoisomerase type I</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="1" type="primary">ilvC</name>
        <name type="ordered locus">Daci_4865</name>
    </gene>
    <organism>
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference key="1">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain>DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="1">Involved in the biosynthesis of branched-chain amino acids (BCAA). Catalyzes an alkyl-migration followed by a ketol-acid reduction of (S)-2-acetolactate (S2AL) to yield (R)-2,3-dihydroxy-isovalerate. In the isomerase reaction, S2AL is rearranged via a Mg-dependent methyl migration to produce 3-hydroxy-3-methyl-2-ketobutyrate (HMKB). In the reductase reaction, this 2-ketoacid undergoes a metal-dependent reduction by NADPH to yield (R)-2,3-dihydroxy-isovalerate.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>(2R)-2,3-dihydroxy-3-methylbutanoate + NADP(+) = (2S)-2-acetolactate + H(+) + NADPH</text>
            <dbReference type="Rhea" id="RHEA:22068"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:49072"/>
            <dbReference type="ChEBI" id="CHEBI:57783"/>
            <dbReference type="ChEBI" id="CHEBI:58349"/>
            <dbReference type="ChEBI" id="CHEBI:58476"/>
            <dbReference type="EC" id="1.1.1.86"/>
        </reaction>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>(2R,3R)-2,3-dihydroxy-3-methylpentanoate + NADP(+) = (S)-2-ethyl-2-hydroxy-3-oxobutanoate + H(+) + NADPH</text>
            <dbReference type="Rhea" id="RHEA:13493"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:49256"/>
            <dbReference type="ChEBI" id="CHEBI:49258"/>
            <dbReference type="ChEBI" id="CHEBI:57783"/>
            <dbReference type="ChEBI" id="CHEBI:58349"/>
            <dbReference type="EC" id="1.1.1.86"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </cofactor>
        <text evidence="1">Binds 2 magnesium ions per subunit.</text>
    </comment>
    <comment type="pathway">
        <text evidence="1">Amino-acid biosynthesis; L-isoleucine biosynthesis; L-isoleucine from 2-oxobutanoate: step 2/4.</text>
    </comment>
    <comment type="pathway">
        <text evidence="1">Amino-acid biosynthesis; L-valine biosynthesis; L-valine from pyruvate: step 2/4.</text>
    </comment>
    <comment type="similarity">
        <text evidence="1">Belongs to the ketol-acid reductoisomerase family.</text>
    </comment>
    <dbReference type="EC" id="1.1.1.86" evidence="1"/>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX37494.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012206664.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A9BME9"/>
    <dbReference type="SMR" id="A9BME9"/>
    <dbReference type="STRING" id="398578.Daci_4865"/>
    <dbReference type="PRIDE" id="A9BME9"/>
    <dbReference type="EnsemblBacteria" id="ABX37494">
        <property type="protein sequence ID" value="ABX37494"/>
        <property type="gene ID" value="Daci_4865"/>
    </dbReference>
    <dbReference type="GeneID" id="60689209"/>
    <dbReference type="KEGG" id="dac:Daci_4865"/>
    <dbReference type="eggNOG" id="COG0059">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_033821_0_1_4"/>
    <dbReference type="OMA" id="RAMFSWL"/>
    <dbReference type="UniPathway" id="UPA00047">
        <property type="reaction ID" value="UER00056"/>
    </dbReference>
    <dbReference type="UniPathway" id="UPA00049">
        <property type="reaction ID" value="UER00060"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004455">
        <property type="term" value="F:ketol-acid reductoisomerase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000287">
        <property type="term" value="F:magnesium ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0050661">
        <property type="term" value="F:NADP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009097">
        <property type="term" value="P:isoleucine biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009099">
        <property type="term" value="P:valine biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00435">
        <property type="entry name" value="IlvC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008927">
        <property type="entry name" value="6-PGluconate_DH-like_C_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013023">
        <property type="entry name" value="KARI"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000506">
        <property type="entry name" value="KARI_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013116">
        <property type="entry name" value="KARI_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014359">
        <property type="entry name" value="KARI_prok"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036291">
        <property type="entry name" value="NAD(P)-bd_dom_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR21371">
        <property type="entry name" value="PTHR21371"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01450">
        <property type="entry name" value="IlvC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07991">
        <property type="entry name" value="IlvN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF000116">
        <property type="entry name" value="IlvC_gammaproteo"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48179">
        <property type="entry name" value="SSF48179"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51735">
        <property type="entry name" value="SSF51735"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00465">
        <property type="entry name" value="ilvC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51851">
        <property type="entry name" value="KARI_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51850">
        <property type="entry name" value="KARI_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword id="KW-0028">Amino-acid biosynthesis</keyword>
    <keyword id="KW-0100">Branched-chain amino acid biosynthesis</keyword>
    <keyword id="KW-0460">Magnesium</keyword>
    <keyword id="KW-0479">Metal-binding</keyword>
    <keyword id="KW-0521">NADP</keyword>
    <keyword id="KW-0560">Oxidoreductase</keyword>
    <keyword id="KW-1185">Reference proteome</keyword>
    <feature type="chain" id="PRO_1000190945" description="Ketol-acid reductoisomerase (NADP(+))">
        <location>
            <begin position="1"/>
            <end position="338"/>
        </location>
    </feature>
    <feature type="domain" description="KARI N-terminal Rossmann" evidence="2">
        <location>
            <begin position="1"/>
            <end position="181"/>
        </location>
    </feature>
    <feature type="domain" description="KARI C-terminal knotted" evidence="3">
        <location>
            <begin position="182"/>
            <end position="327"/>
        </location>
    </feature>
    <feature type="active site" evidence="1">
        <location>
            <position position="107"/>
        </location>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <begin position="24"/>
            <end position="27"/>
        </location>
        <ligand>
            <name>NADP(+)</name>
            <dbReference type="ChEBI" id="CHEBI:58349"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <position position="47"/>
        </location>
        <ligand>
            <name>NADP(+)</name>
            <dbReference type="ChEBI" id="CHEBI:58349"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <position position="52"/>
        </location>
        <ligand>
            <name>NADP(+)</name>
            <dbReference type="ChEBI" id="CHEBI:58349"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <position position="133"/>
        </location>
        <ligand>
            <name>NADP(+)</name>
            <dbReference type="ChEBI" id="CHEBI:58349"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <position position="190"/>
        </location>
        <ligand>
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
            <label>1</label>
        </ligand>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <position position="190"/>
        </location>
        <ligand>
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
            <label>2</label>
        </ligand>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <position position="194"/>
        </location>
        <ligand>
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
            <label>1</label>
        </ligand>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <position position="226"/>
        </location>
        <ligand>
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
            <label>2</label>
        </ligand>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <position position="230"/>
        </location>
        <ligand>
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
            <label>2</label>
        </ligand>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <position position="251"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <evidence type="ECO:0000255" key="1">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00435"/>
        </source>
    </evidence>
    <evidence type="ECO:0000255" key="2">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU01197"/>
        </source>
    </evidence>
    <evidence type="ECO:0000255" key="3">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU01198"/>
        </source>
    </evidence>
    <sequence length="338" mass="36779" checksum="2581F770F9E705E8" modified="2008-01-15" version="1">MKVFYDKDCDLSLIKGKTVAIIGYGSQGHAHAQNLNESGVKVVVGLRKGGASWDKVAKAGLTVAEVDDAVKSADLVMILLPDENIPEVYNNNVAPNIKQGATLAFAHGFNIHYNQVVPRADLDVIMVAPKGPGHTVRSEYLKGGGVPSLIAVYQDKSGKARDLALSYAMANGGGKGGIIETNFKEETETDLFGEQAVLCGGAVELVKMGFETLTEAGYAPEMAYFECLHELKLIVDLMYEGGIANMNYSISNNAEYGEYVTGTEVINDKSREAMRAALKRIQTGEYAKMFIQEGRTNYPSMTARRRMNADHAIEKVGGQLRAMMPWISKNKLVDQSRN</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="48" xmlns="http://uniprot.org/uniprot">
    <accession>A9BMF5</accession>
    <name>A9BMF5_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="7">RDD domain containing protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ordered locus">Daci_4871</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="8" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX37500.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012206670.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_4871"/>
    <dbReference type="PRIDE" id="A9BMF5"/>
    <dbReference type="EnsemblBacteria" id="ABX37500">
        <property type="protein sequence ID" value="ABX37500"/>
        <property type="gene ID" value="Daci_4871"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_4871"/>
    <dbReference type="eggNOG" id="COG1714">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_053152_4_2_4"/>
    <dbReference type="OMA" id="MACWLYE"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010432">
        <property type="entry name" value="RDD"/>
    </dbReference>
    <dbReference type="Pfam" id="PF06271">
        <property type="entry name" value="RDD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4 5" id="KW-0472">Membrane</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 5" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="3 5" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="32"/>
            <end position="53"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="65"/>
            <end position="83"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="125"/>
            <end position="151"/>
        </location>
    </feature>
    <feature type="domain" description="RDD" evidence="6">
        <location>
            <begin position="24"/>
            <end position="167"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="Pfam" id="PF06271"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="ABX37500.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="181" mass="20527" checksum="C6C2384B246AE306" modified="2008-01-15" version="1">MTNATSPASTTAAAIAASPQMAPRLARRMACWLYEGMLLFGVVFIAGYLFGTLSQTRNAMDNRHALQAFMFVVLGIYFVWFWSKGQTLAMKTWHIRLVDAAGQPVSQLRALRRYVFSWIWLLPPLAAYSTGVPALTTLMLLVLWVALWALLSRLHPRRQFWHDAWAGTQLIHQAPAPRKKR</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="77" xmlns="http://uniprot.org/uniprot">
    <accession>A9BN00</accession>
    <name>A9BN00_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Transcriptional regulator, LysR family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Daci_5066</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="4" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the LysR transcriptional regulatory family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX37695.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012206865.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_5066"/>
    <dbReference type="PRIDE" id="A9BN00"/>
    <dbReference type="EnsemblBacteria" id="ABX37695">
        <property type="protein sequence ID" value="ABX37695"/>
        <property type="gene ID" value="Daci_5066"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_5066"/>
    <dbReference type="eggNOG" id="COG0583">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_039613_16_2_4"/>
    <dbReference type="OMA" id="AIYPNAR"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003700">
        <property type="term" value="F:DNA-binding transcription factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005119">
        <property type="entry name" value="LysR_subst-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000847">
        <property type="entry name" value="Tscrpt_reg_HTH_LysR"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036390">
        <property type="entry name" value="WH_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00126">
        <property type="entry name" value="HTH_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03466">
        <property type="entry name" value="LysR_substrate"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46785">
        <property type="entry name" value="SSF46785"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50931">
        <property type="entry name" value="HTH_LYSR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HTH lysR-type" evidence="2">
        <location>
            <begin position="2"/>
            <end position="59"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00009437"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS50931"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ABX37695.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="314" mass="35036" checksum="7772928FA4C1EE01" modified="2008-01-15" version="1">MPNLRSIETFVKALEGGSIASAARQLGISPAAASQNIARLERELGTRLITRTTRSMALTEAGERYLARVGPVLQELEKAQSDLSQLHGELQGRLRIACMAAFGRHVLAPLLPVFAAQHPRLELELLVVDRQVDVLKEDVDISVRYRDVLEPGMAVRQLAAVPRVLCASPAYLQAHGRPRTAQDLLDHACLLYRREADGRFMRWPFSRDGKRVDPQLRVTAIASDVDALTEMAVAGGGIVWIGSFIAHRYMREGLLQPLTLGPARKGQLHFEDTTLDFFACFRDRQYVPTKVRALVDYLVETLPQQPMLRWNVPA</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="61" xmlns="http://uniprot.org/uniprot">
    <accession>A9BN10</accession>
    <name>A9BN10_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="7">Major facilitator superfamily MFS_1</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ordered locus">Daci_5076</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="8" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX37705.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_5076"/>
    <dbReference type="PRIDE" id="A9BN10"/>
    <dbReference type="EnsemblBacteria" id="ABX37705">
        <property type="protein sequence ID" value="ABX37705"/>
        <property type="gene ID" value="Daci_5076"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_5076"/>
    <dbReference type="eggNOG" id="COG2271">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_001265_0_0_4"/>
    <dbReference type="OMA" id="ICMTCMG"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0022857">
        <property type="term" value="F:transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.1250.20">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011701">
        <property type="entry name" value="MFS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020846">
        <property type="entry name" value="MFS_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036259">
        <property type="entry name" value="MFS_trans_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07690">
        <property type="entry name" value="MFS_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF103473">
        <property type="entry name" value="SSF103473"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50850">
        <property type="entry name" value="MFS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4 5" id="KW-0472">Membrane</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 5" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="3 5" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="64"/>
            <end position="82"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="102"/>
            <end position="122"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="134"/>
            <end position="153"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="159"/>
            <end position="180"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="192"/>
            <end position="215"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="227"/>
            <end position="249"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="294"/>
            <end position="315"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="327"/>
            <end position="348"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="360"/>
            <end position="379"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="385"/>
            <end position="405"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="417"/>
            <end position="439"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="451"/>
            <end position="470"/>
        </location>
    </feature>
    <feature type="domain" description="MFS" evidence="6">
        <location>
            <begin position="68"/>
            <end position="475"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="PROSITE" id="PS50850"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="ABX37705.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="477" mass="51920" checksum="62F8517B41884024" modified="2008-01-15" version="1">MRVCIGRREGQHSLRIFRPVIPVDHNPSTKDFLMSSLPASAEVAGAAPALASETPAEAAVYRKVAWRLLPFIMACYVAAYLDRVNVGFAKLHMLADLQFSEAMYGLGAGLFFIGYFFFEVPSNMLMHRIGAKATISRIMIMWSLISAAMMFVSTPTQFYVLRFLLGAAEAGFYPGMILYMTYWFPSYRRARMVALFMCAIPVSGILGGPLSGGIMDLMQGVAGLRGWQWLFLLEAIPSMILGLAVLWYLDNGIRAARWLTEAEKTLLERNIARENASKSDSHVTLRALFSDPRIIKMALICFCTVMGQYGLTFWLPSLIRQSGVEGAFHIGLLTAVPFSVAVVSMNLVSRSSDRMRERRWHLIVPFCVGAAGLMLSAIFSGNVYLSLAALALAAGGSLATSPLFWSLPTAILSSAGAAAGIALINSFANLAGFISPYMIGLIKDATQSTNAAMFVLAGVLLFGAFLTYTVPAKLVNK</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="82" xmlns="http://uniprot.org/uniprot">
    <accession>A9BN43</accession>
    <name>A9BN43_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">Cell division protein FtsB</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="primary">ftsB</name>
        <name evidence="4" type="ordered locus">Daci_5109</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="5" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="3">Essential cell division protein. May link together the upstream cell division proteins, which are predominantly cytoplasmic, with the downstream cell division proteins, which are predominantly periplasmic.</text>
    </comment>
    <comment type="subunit">
        <text evidence="3">Part of a complex composed of FtsB, FtsL and FtsQ.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="3">Cell inner membrane</location>
            <topology evidence="3">Single-pass type II membrane protein</topology>
        </subcellularLocation>
        <text evidence="3">Localizes to the division septum.</text>
    </comment>
    <comment type="similarity">
        <text evidence="3">Belongs to the FtsB family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX37738.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012206908.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_5109"/>
    <dbReference type="PRIDE" id="A9BN43"/>
    <dbReference type="EnsemblBacteria" id="ABX37738">
        <property type="protein sequence ID" value="ABX37738"/>
        <property type="gene ID" value="Daci_5109"/>
    </dbReference>
    <dbReference type="GeneID" id="60689458"/>
    <dbReference type="KEGG" id="dac:Daci_5109"/>
    <dbReference type="eggNOG" id="COG2919">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_134863_5_1_4"/>
    <dbReference type="OMA" id="YELGMVK"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0032153">
        <property type="term" value="C:cell division site"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005887">
        <property type="term" value="C:integral component of plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043093">
        <property type="term" value="P:FtsZ-dependent cytokinesis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00599">
        <property type="entry name" value="FtsB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023081">
        <property type="entry name" value="Cell_div_FtsB"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007060">
        <property type="entry name" value="FtsL/DivIC"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37485">
        <property type="entry name" value="PTHR37485"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04977">
        <property type="entry name" value="DivIC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-0131">Cell cycle</keyword>
    <keyword evidence="3" id="KW-0132">Cell division</keyword>
    <keyword evidence="3" id="KW-0997">Cell inner membrane</keyword>
    <keyword evidence="1 3" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="3" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="2 3" id="KW-0472">Membrane</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="3" id="KW-1133">Transmembrane helix</keyword>
    <feature type="topological domain" description="Cytoplasmic" evidence="3">
        <location>
            <begin position="1"/>
            <end position="5"/>
        </location>
    </feature>
    <feature type="topological domain" description="Periplasmic" evidence="3">
        <location>
            <begin position="24"/>
            <end position="92"/>
        </location>
    </feature>
    <feature type="coiled-coil region" evidence="3">
        <location>
            <begin position="31"/>
            <end position="72"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00599"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="ABX37738.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="92" mass="10253" checksum="B5B3E0D7CB984B80" modified="2008-01-15" version="1">MVNRVVPLVLLALLAAVHAQLWLGHGSVAYVKELQQQIHDQNVANALEKAENDRLASEVNDLKDGLAMVEEKARSELGMVKPNEIFVQIVRR</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="70" xmlns="http://uniprot.org/uniprot">
    <accession>A9BNA2</accession>
    <name>A9BNA2_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="6">Proton-translocating NADH-quinone oxidoreductase, chain M</fullName>
            <ecNumber evidence="6">1.6.99.5</ecNumber>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ordered locus">Daci_5168</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="7" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1 3">Membrane</location>
            <topology evidence="1 3">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the complex I subunit 4 family.</text>
    </comment>
    <dbReference type="EC" id="1.6.99.5" evidence="6"/>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX37797.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012206967.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_5168"/>
    <dbReference type="PRIDE" id="A9BNA2"/>
    <dbReference type="EnsemblBacteria" id="ABX37797">
        <property type="protein sequence ID" value="ABX37797"/>
        <property type="gene ID" value="Daci_5168"/>
    </dbReference>
    <dbReference type="GeneID" id="60689518"/>
    <dbReference type="KEGG" id="dac:Daci_5168"/>
    <dbReference type="eggNOG" id="COG1008">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_007100_4_4_4"/>
    <dbReference type="OMA" id="ITRWGNQ"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008137">
        <property type="term" value="F:NADH dehydrogenase (ubiquinone) activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0042773">
        <property type="term" value="P:ATP synthesis coupled electron transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010227">
        <property type="entry name" value="NADH_Q_OxRdtase_chainM/4"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003918">
        <property type="entry name" value="NADH_UbQ_OxRdtase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001750">
        <property type="entry name" value="ND/Mrp_mem"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43507">
        <property type="entry name" value="PTHR43507"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00361">
        <property type="entry name" value="Proton_antipo_M"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR01437">
        <property type="entry name" value="NUOXDRDTASE4"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01972">
        <property type="entry name" value="NDH_I_M"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-0472">Membrane</keyword>
    <keyword evidence="6" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 4" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="4" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="4">
        <location>
            <begin position="6"/>
            <end position="22"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="4">
        <location>
            <begin position="29"/>
            <end position="49"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="4">
        <location>
            <begin position="82"/>
            <end position="102"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="4">
        <location>
            <begin position="109"/>
            <end position="127"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="4">
        <location>
            <begin position="133"/>
            <end position="153"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="4">
        <location>
            <begin position="165"/>
            <end position="184"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="4">
        <location>
            <begin position="199"/>
            <end position="219"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="4">
        <location>
            <begin position="240"/>
            <end position="260"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="4">
        <location>
            <begin position="272"/>
            <end position="293"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="4">
        <location>
            <begin position="300"/>
            <end position="319"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="4">
        <location>
            <begin position="331"/>
            <end position="349"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="4">
        <location>
            <begin position="370"/>
            <end position="391"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="4">
        <location>
            <begin position="403"/>
            <end position="424"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="4">
        <location>
            <begin position="445"/>
            <end position="465"/>
        </location>
    </feature>
    <feature type="domain" description="Proton_antipo_M" evidence="5">
        <location>
            <begin position="131"/>
            <end position="414"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00009025"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="RuleBase" id="RU000320"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="Pfam" id="PF00361"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="ABX37797.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="491" mass="53953" checksum="EF5BDE7D1637DD82" modified="2008-01-15" version="1">MHWLSLSIWVPIAFGALLLALGREDQVKAVRWLALVGALAGLAVTLPLIQQFDNSTAAMQFVEKALWIERFNIYYHLGVDGISFWFVPLTAFITVIVVIASWENITERVNQYMGAFLILSGLMVGVFSALDGLLFYVFFEATLIPMYLIIGIWGGPNRIYAAFKFFLYTLMGSLLTLIAIIYLYTQSGGSFEILDWHKLPLSMTAQTLIFFAFFAAFAVKVPMWPVHTWLPDVHVEAPTGGSAVLAAIMLKLGAYGFLRFSMPIAPDASHKWAWLVIALSLVAVIYVGVVALVQKDMKKLVAYSSVAHMGFVTLGFFIFNPLGVAGGIVQMIAHGFVSGAMFLCIGVLYDRVHSREIASYGGVVNTMPKFAAFALLFAMANCGLPATAGFVGEWMVILGAVQYNFWIGLGAATALIFGAAYTLWMYKRVYLGPVTNDNVRGLTDIGNREFLVLGLLAIAVLYMGLYPKPFTDVMDVSVAELLKHVAMSKLQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="69" xmlns="http://uniprot.org/uniprot">
    <accession>A9BNF0</accession>
    <name>A9BNF0_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="7">Molybdopterin molybdenumtransferase</fullName>
            <ecNumber evidence="7">2.10.1.1</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="9" type="ordered locus">Daci_5216</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="9 10" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="10" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="2 7">Catalyzes the insertion of molybdate into adenylated molybdopterin with the concomitant release of AMP.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>adenylyl-molybdopterin + H(+) + molybdate = AMP + H2O + Mo-molybdopterin</text>
            <dbReference type="Rhea" id="RHEA:35047"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:36264"/>
            <dbReference type="ChEBI" id="CHEBI:62727"/>
            <dbReference type="ChEBI" id="CHEBI:71302"/>
            <dbReference type="ChEBI" id="CHEBI:456215"/>
            <dbReference type="EC" id="2.10.1.1"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="7">
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </cofactor>
    </comment>
    <comment type="pathway">
        <text evidence="3 7">Cofactor biosynthesis; molybdopterin biosynthesis.</text>
    </comment>
    <comment type="similarity">
        <text evidence="4 7">Belongs to the MoeA family.</text>
    </comment>
    <dbReference type="EC" id="2.10.1.1" evidence="7"/>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX37845.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012207015.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_5216"/>
    <dbReference type="PRIDE" id="A9BNF0"/>
    <dbReference type="EnsemblBacteria" id="ABX37845">
        <property type="protein sequence ID" value="ABX37845"/>
        <property type="gene ID" value="Daci_5216"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_5216"/>
    <dbReference type="eggNOG" id="COG0303">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_010186_7_0_4"/>
    <dbReference type="OMA" id="MTGAMVP"/>
    <dbReference type="UniPathway" id="UPA00344"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0061599">
        <property type="term" value="F:molybdopterin molybdotransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006777">
        <property type="term" value="P:Mo-molybdopterin cofactor biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0032324">
        <property type="term" value="P:molybdopterin cofactor biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd00887">
        <property type="entry name" value="MoeA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.340.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.980.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036425">
        <property type="entry name" value="MoaB/Mog-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001453">
        <property type="entry name" value="MoaB/Mog_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038987">
        <property type="entry name" value="MoeA-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005111">
        <property type="entry name" value="MoeA_C_domain_IV"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036688">
        <property type="entry name" value="MoeA_C_domain_IV_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005110">
        <property type="entry name" value="MoeA_linker/N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036135">
        <property type="entry name" value="MoeA_linker/N_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10192">
        <property type="entry name" value="PTHR10192"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00994">
        <property type="entry name" value="MoCF_biosynth"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03454">
        <property type="entry name" value="MoeA_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03453">
        <property type="entry name" value="MoeA_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00852">
        <property type="entry name" value="MoCF_biosynth"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53218">
        <property type="entry name" value="SSF53218"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF63867">
        <property type="entry name" value="SSF63867"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF63882">
        <property type="entry name" value="SSF63882"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00177">
        <property type="entry name" value="molyb_syn"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="7" id="KW-0460">Magnesium</keyword>
    <keyword evidence="7" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="5 7" id="KW-0500">Molybdenum</keyword>
    <keyword evidence="6 7" id="KW-0501">Molybdenum cofactor biosynthesis</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="7" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="MoCF_biosynth" evidence="8">
        <location>
            <begin position="180"/>
            <end position="326"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001529"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00002901"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00005046"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00010763"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022505"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023150"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="RuleBase" id="RU365090"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="SMART" id="SM00852"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="ABX37845.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="411" mass="44018" checksum="E0448E26D1FE94D3" modified="2008-01-15" version="1">MRAPLKPLDEALAELLAQALPLAGDDTVDSFDADGRVLLADAVSPLQVPPQDNSAMDGYAVRSAECTQGNAELPVSQRIPAGAVGQPLAAGTVARIFTGAPVPEGADAIVMQEDCEVLEDGRVRIKARPEAGQWIRRSGEDIRRGATVIAAGTRLSPAELGLAASIGLASLRVARKPRVALFSTGDELVMPGTVAPEQMPPGSIYNSNRFFLRALLQRMGCEVTDFGIVPDRREATVDALREAARAHDLILTSGGVSVGEEDHVKPAVQALGQLDLWQIAVKPGKPFAYGRVNREGEGFAHFIGLPGNPVSSFVTFLLLVRPFVLRLQGVQQALPRSVEVRADFHWPRGDKRREFLRVRYNDSGGLELFRNQSSGVLTSAAWGDGVVDNPPGQAIAPGDRVRFIAFSELLS</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-01-19" version="64" xmlns="http://uniprot.org/uniprot">
    <accession>A9BNU4</accession>
    <name>A9BNU4_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="8">Branched-chain amino acid transport system carrier protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="9" type="ordered locus">Daci_5360</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="9 10" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="10" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="8">Component of the transport system for branched-chain amino acids.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="8">Cell inner membrane</location>
            <topology evidence="8">Multi-pass membrane protein</topology>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2 8">Belongs to the branched chain amino acid transporter family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX37989.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012207158.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_5360"/>
    <dbReference type="EnsemblBacteria" id="ABX37989">
        <property type="protein sequence ID" value="ABX37989"/>
        <property type="gene ID" value="Daci_5360"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_5360"/>
    <dbReference type="eggNOG" id="COG1114">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_036807_0_0_4"/>
    <dbReference type="OMA" id="AFAFSYH"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015658">
        <property type="term" value="F:branched-chain amino acid transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004685">
        <property type="entry name" value="Brnchd-chn_aa_trnsp_Livcs"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30588">
        <property type="entry name" value="PTHR30588"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF05525">
        <property type="entry name" value="Branch_AA_trans"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00796">
        <property type="entry name" value="livcs"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="8" id="KW-0029">Amino-acid transport</keyword>
    <keyword evidence="4" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="7 8" id="KW-0472">Membrane</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="5 8" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="6 8" id="KW-1133">Transmembrane helix</keyword>
    <keyword evidence="3 8" id="KW-0813">Transport</keyword>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="9"/>
            <end position="28"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="40"/>
            <end position="62"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="82"/>
            <end position="99"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="119"/>
            <end position="138"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="150"/>
            <end position="172"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="192"/>
            <end position="212"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="224"/>
            <end position="245"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="280"/>
            <end position="305"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="317"/>
            <end position="336"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="342"/>
            <end position="362"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="369"/>
            <end position="386"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="406"/>
            <end position="422"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00008540"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022448"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="RuleBase" id="RU362122"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="ABX37989.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="437" mass="44875" checksum="8413938BAC29BD7A" modified="2008-01-15" version="1">MQTLKTRDLIALGFMTFALFLGAGNIIFPPMVGQGAGEHAAAAATGFLLTGVGLPLLTVVALARVGGGLDALTSPVGRKAGMVLGLLIYLILGPLFATPRTATVSFEMGFAPFVGHSSTALFIYSAVYFMLVMGLSLFPGKLIDTIGKLITPVLILALVVLGAAAVLLPAGAATSASGDYLVAPLTEGFLEGYQTMDALGALAFGIVIVNAIRDRGISHTGLQTRYAIIAGVIAAVGLGLVYLSLIHLGATSQSIAPQAQTGVLILTRYVDHTFGPIGSLLLAVVISLACLTTAVGLVSACGAYFSEMLRLPYRAVVVAIGLACILVSNQGLAQLIALSGPVLVGIYPLAIALVVLSLLSGLWRNAQRVFAPVLAVALVFGLVDAAKAAGWQDWLPAFLNSLPGNGMGWALPVAATLVLAALHDRLRPAPANAFRPS</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="59" xmlns="http://uniprot.org/uniprot">
    <accession>A9BNV5</accession>
    <name>A9BNV5_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">DUF1653 domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_5371</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX38000.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012207169.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_5371"/>
    <dbReference type="PRIDE" id="A9BNV5"/>
    <dbReference type="EnsemblBacteria" id="ABX38000">
        <property type="protein sequence ID" value="ABX38000"/>
        <property type="gene ID" value="Daci_5371"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_5371"/>
    <dbReference type="eggNOG" id="COG4728">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_097488_2_1_4"/>
    <dbReference type="OMA" id="GIYRHYK"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.30.30.320">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023387">
        <property type="entry name" value="DUF1653-like_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037135">
        <property type="entry name" value="DUF1653-like_dom_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07866">
        <property type="entry name" value="DUF1653"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="DUF1653" evidence="1">
        <location>
            <begin position="16"/>
            <end position="75"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF07866"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX38000.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="90" mass="10281" checksum="2E34BDFC41C072AA" modified="2008-01-15" version="1">MTDDDLPPLIPTPPGLYRHYKGALYEVLATVRHSETRESMTLYRALYGERGLWVRPAAMFNETVVIDGVEQPRFARCPEPEQQAFQSEGL</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="73" xmlns="http://uniprot.org/uniprot">
    <accession>A9BNY6</accession>
    <name>A9BNY6_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Transcriptional regulator, TrmB</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_5402</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX38031.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_5402"/>
    <dbReference type="PRIDE" id="A9BNY6"/>
    <dbReference type="EnsemblBacteria" id="ABX38031">
        <property type="protein sequence ID" value="ABX38031"/>
        <property type="gene ID" value="Daci_5402"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_5402"/>
    <dbReference type="eggNOG" id="COG1846">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_083287_8_0_4"/>
    <dbReference type="OMA" id="QCTRTHK"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003700">
        <property type="term" value="F:DNA-binding transcription factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000835">
        <property type="entry name" value="HTH_MarR-typ"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036390">
        <property type="entry name" value="WH_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12802">
        <property type="entry name" value="MarR_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00598">
        <property type="entry name" value="HTHMARR"/>
    </dbReference>
    <dbReference type="SMART" id="SM00347">
        <property type="entry name" value="HTH_MARR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46785">
        <property type="entry name" value="SSF46785"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50995">
        <property type="entry name" value="HTH_MARR_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HTH marR-type" evidence="1">
        <location>
            <begin position="11"/>
            <end position="144"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS50995"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX38031.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="168" mass="18970" checksum="E9A5FB2528B87752" modified="2008-01-15" version="1">MNTRPAPTSIQQMLLFRINRYFGAAGGVAMRMCEAHFGITRREWGVMATVAANEGLLSSELAERAQLDRARTSRALSGLEEKGWVQRSPMPGDRRRVAVSLTAEGRRMYGLILPRMAQIHLDLVSVLSDEELAQFDTLLARLQRHALTLEAEGRYDALPRVDRGRHRR</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="72" xmlns="http://uniprot.org/uniprot">
    <accession>A9BP48</accession>
    <name>A9BP48_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">FAD linked oxidase domain protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_5464</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX38093.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012207262.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_5464"/>
    <dbReference type="PRIDE" id="A9BP48"/>
    <dbReference type="EnsemblBacteria" id="ABX38093">
        <property type="protein sequence ID" value="ABX38093"/>
        <property type="gene ID" value="Daci_5464"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_5464"/>
    <dbReference type="eggNOG" id="COG0247">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="eggNOG" id="COG0277">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_262983_0_0_4"/>
    <dbReference type="OMA" id="FGLMGHE"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0071949">
        <property type="term" value="F:FAD binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051536">
        <property type="term" value="F:iron-sulfur cluster binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016491">
        <property type="term" value="F:oxidoreductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.1060.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.465.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004017">
        <property type="entry name" value="Cys_rich_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR021817">
        <property type="entry name" value="DUF3400"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR022153">
        <property type="entry name" value="DUF3683"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016166">
        <property type="entry name" value="FAD-bd_PCMH"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036318">
        <property type="entry name" value="FAD-bd_PCMH-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016169">
        <property type="entry name" value="FAD-bd_PCMH_sub2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016164">
        <property type="entry name" value="FAD-linked_Oxase-like_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004113">
        <property type="entry name" value="FAD-linked_oxidase_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009051">
        <property type="entry name" value="Helical_ferredxn"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006094">
        <property type="entry name" value="Oxid_FAD_bind_N"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02754">
        <property type="entry name" value="CCG"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="Pfam" id="PF11880">
        <property type="entry name" value="DUF3400"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12447">
        <property type="entry name" value="DUF3683"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02913">
        <property type="entry name" value="FAD-oxidase_C"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01565">
        <property type="entry name" value="FAD_binding_4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55103">
        <property type="entry name" value="SSF55103"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56176">
        <property type="entry name" value="SSF56176"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51387">
        <property type="entry name" value="FAD_PCMH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="FAD-binding PCMH-type" evidence="1">
        <location>
            <begin position="180"/>
            <end position="413"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS51387"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX38093.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="1304" mass="145079" checksum="78F82B1F15DFD8DA" modified="2008-01-15" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="67" xmlns="http://uniprot.org/uniprot">
    <accession>A9BP91</accession>
    <name>A9BP91_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Allophanate hydrolase subunit 1</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ordered locus">Daci_0008</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="6" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX32655.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012201948.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_0008"/>
    <dbReference type="PRIDE" id="A9BP91"/>
    <dbReference type="EnsemblBacteria" id="ABX32655">
        <property type="protein sequence ID" value="ABX32655"/>
        <property type="gene ID" value="Daci_0008"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_0008"/>
    <dbReference type="eggNOG" id="COG2049">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_020207_4_1_4"/>
    <dbReference type="OMA" id="HSGSPWF"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016787">
        <property type="term" value="F:hydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.100.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003833">
        <property type="entry name" value="CT_C_D"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029000">
        <property type="entry name" value="Cyclophilin-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010016">
        <property type="entry name" value="KipI_fam"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR34698">
        <property type="entry name" value="PTHR34698"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02682">
        <property type="entry name" value="CT_C_D"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00796">
        <property type="entry name" value="AHS1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50891">
        <property type="entry name" value="SSF50891"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="2 5" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="1" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="AHS1" evidence="4">
        <location>
            <begin position="11"/>
            <end position="236"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="SMART" id="SM00796"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="ABX32655.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="303" mass="33689" checksum="EFA0B2ACCD458EA3" modified="2008-01-15" version="1">MTAASTLPTQARYSFGGDEHLFVEISEEMSLPAFFKGMAICNELRRRAQAGEITGVTEICPANAAYLVRFDPDAIAPDALLATLKDIEAGLGDADLQMQTRIVEIPVLYNDPWTHETLMRFRERHQDPSGTDIEYAARINGHVSVEAFIEAHSSAPWFVSMVGFVAGLPFLFQMVERQRQIQVPKYLSPRTDTPRLTLGHGGCFSCIYSVRGAGGYQMFGVTPAPIFDPAQRLSYLKELMVFFQPGDIVKYKPIDRAEYDRQIAQVEAGTYALRIAPVSFSLNDFLADPGGYNQQLLKVLHGD</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="75" xmlns="http://uniprot.org/uniprot">
    <accession>A9BP94</accession>
    <name>A9BP94_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Transcriptional regulator, LysR family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Daci_0011</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="4" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the LysR transcriptional regulatory family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX32658.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012201951.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_0011"/>
    <dbReference type="PRIDE" id="A9BP94"/>
    <dbReference type="EnsemblBacteria" id="ABX32658">
        <property type="protein sequence ID" value="ABX32658"/>
        <property type="gene ID" value="Daci_0011"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_0011"/>
    <dbReference type="eggNOG" id="COG0583">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_039613_6_0_4"/>
    <dbReference type="OMA" id="MRRHTDG"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003700">
        <property type="term" value="F:DNA-binding transcription factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005119">
        <property type="entry name" value="LysR_subst-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000847">
        <property type="entry name" value="Tscrpt_reg_HTH_LysR"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036390">
        <property type="entry name" value="WH_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00126">
        <property type="entry name" value="HTH_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03466">
        <property type="entry name" value="LysR_substrate"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46785">
        <property type="entry name" value="SSF46785"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50931">
        <property type="entry name" value="HTH_LYSR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HTH lysR-type" evidence="2">
        <location>
            <begin position="1"/>
            <end position="60"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00009437"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS50931"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ABX32658.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="306" mass="33127" checksum="DAE787F2CFDEAFE7" modified="2008-01-15" version="1">MRYELTDLRVFLAIAQAKSLSAGAAEMHLTAPSASYRLKNLEQAMGASLFERTSKGMVLTPAGMTVKKYADSIFGSVDRLHGEMQRHINGISGHIRVFANSSTLTGIAPVLSRYLAHYPNVNVDLEERLSEDTVRAVLDGNADVGLVAGQIDLHGLHAITYGHDELVFVVPAGHPLAASSRVPLETALTYDLVSIGRKTSNFLYLQGMASRLGMNPRVRVHAPTFEAVLQCVQEGVGIALVPRSIARPALQAHRLAAVGLDEAWAQREQKVVTREPETLPAYARDFVAYVAAQPLPEEGAVQESLP</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="52" xmlns="http://uniprot.org/uniprot">
    <accession>A9BPP4</accession>
    <name>A9BPP4_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Mammalian cell entry related domain protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ordered locus">Daci_0367</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="5" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX33013.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012202306.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_0367"/>
    <dbReference type="PRIDE" id="A9BPP4"/>
    <dbReference type="EnsemblBacteria" id="ABX33013">
        <property type="protein sequence ID" value="ABX33013"/>
        <property type="gene ID" value="Daci_0367"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_0367"/>
    <dbReference type="eggNOG" id="COG1463">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_013850_1_1_4"/>
    <dbReference type="OMA" id="VPGQIIV"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003399">
        <property type="entry name" value="Mce/MlaD"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02470">
        <property type="entry name" value="MlaD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0472">Membrane</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="2" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="6"/>
            <end position="28"/>
        </location>
    </feature>
    <feature type="domain" description="MlaD" evidence="3">
        <location>
            <begin position="46"/>
            <end position="112"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="279"/>
            <end position="320"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF02470"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="ABX33013.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="320" mass="33736" checksum="011FCD17D86EC86E" modified="2008-01-15" version="1">MENKSHAMAAGIFVLVVAALLAGLAIWLTRDTRQYNEYELSTKDGISGLQAQAAVRYKGVAVGKVTQIGFDPQTNGNVLIRIAIGVNTPITPTTFAVLGYQGVTGLAHVQLDDADQPQPQLPPGPSGLPRLPLRSSPLSMLADQGQVLLERADEISRRLSDMLDTDNQKRVSQALENIAAAAAGVQQLTQNLDRTLSTQVPQLAADAHNTLQSLEKASNGASAVASELQQTVRRVNAQDGPLEQIAQSTRALTRMADSLGRSTVPHANRAADDVSRAARQMGTAASRFSDNPQAVIYGPGQARPGPGEPGFVAPSAATQP</sequence>
</entry>
<entry dataset="Swiss-Prot" created="2009-04-14" modified="2022-08-03" version="73" xmlns="http://uniprot.org/uniprot">
    <accession>A9BPR7</accession>
    <name>RS10_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">30S ribosomal protein S10</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="1" type="primary">rpsJ</name>
        <name type="ordered locus">Daci_0390</name>
    </gene>
    <organism>
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference key="1">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain>DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="1">Involved in the binding of tRNA to the ribosomes.</text>
    </comment>
    <comment type="subunit">
        <text evidence="1">Part of the 30S ribosomal subunit.</text>
    </comment>
    <comment type="similarity">
        <text evidence="1">Belongs to the universal ribosomal protein uS10 family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX33036.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_003059431.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A9BPR7"/>
    <dbReference type="SMR" id="A9BPR7"/>
    <dbReference type="STRING" id="398578.Daci_0390"/>
    <dbReference type="PRIDE" id="A9BPR7"/>
    <dbReference type="EnsemblBacteria" id="ABX33036">
        <property type="protein sequence ID" value="ABX33036"/>
        <property type="gene ID" value="Daci_0390"/>
    </dbReference>
    <dbReference type="GeneID" id="60805465"/>
    <dbReference type="GeneID" id="63996317"/>
    <dbReference type="KEGG" id="dac:Daci_0390"/>
    <dbReference type="eggNOG" id="COG0051">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_122625_1_3_4"/>
    <dbReference type="OMA" id="QFEIRVH"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005840">
        <property type="term" value="C:ribosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003735">
        <property type="term" value="F:structural constituent of ribosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000049">
        <property type="term" value="F:tRNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006412">
        <property type="term" value="P:translation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.70.600">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00508">
        <property type="entry name" value="Ribosomal_S10"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001848">
        <property type="entry name" value="Ribosomal_S10"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018268">
        <property type="entry name" value="Ribosomal_S10_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027486">
        <property type="entry name" value="Ribosomal_S10_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036838">
        <property type="entry name" value="Ribosomal_S10_dom_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11700">
        <property type="entry name" value="PTHR11700"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00338">
        <property type="entry name" value="Ribosomal_S10"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00971">
        <property type="entry name" value="RIBOSOMALS10"/>
    </dbReference>
    <dbReference type="SMART" id="SM01403">
        <property type="entry name" value="Ribosomal_S10"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54999">
        <property type="entry name" value="SSF54999"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01049">
        <property type="entry name" value="rpsJ_bact"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00361">
        <property type="entry name" value="RIBOSOMAL_S10"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword id="KW-1185">Reference proteome</keyword>
    <keyword id="KW-0687">Ribonucleoprotein</keyword>
    <keyword id="KW-0689">Ribosomal protein</keyword>
    <feature type="chain" id="PRO_1000127112" description="30S ribosomal protein S10">
        <location>
            <begin position="1"/>
            <end position="103"/>
        </location>
    </feature>
    <evidence type="ECO:0000255" key="1">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00508"/>
        </source>
    </evidence>
    <sequence length="103" mass="11783" checksum="214CF74D7776EA82" modified="2008-01-15" version="1">MSKQKIRIRLKAFDYKLIDQSAAEIVDTAKRTGAIVKGPVPLPTRMKRFDILRSPHVNKTSRDQFEIRTHQRLMDIVDPTDKTVDALMKLDLPAGVDVEIKLQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="45" xmlns="http://uniprot.org/uniprot">
    <accession>A9BPV4</accession>
    <name>A9BPV4_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Daci_0427</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="2" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX33073.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012202364.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_0427"/>
    <dbReference type="PRIDE" id="A9BPV4"/>
    <dbReference type="EnsemblBacteria" id="ABX33073">
        <property type="protein sequence ID" value="ABX33073"/>
        <property type="gene ID" value="Daci_0427"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_0427"/>
    <dbReference type="eggNOG" id="ENOG5032RXQ">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_1375933_0_0_4"/>
    <dbReference type="OMA" id="WYFQNGP"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR021332">
        <property type="entry name" value="DUF2944"/>
    </dbReference>
    <dbReference type="Pfam" id="PF11161">
        <property type="entry name" value="DUF2944"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ABX33073.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="183" mass="20472" checksum="1B08E9D07C74961A" modified="2008-01-15" version="1">MDDIVKQAMAKWPHVPACSGWLGLDERGRWYLRDEEAQACGAFDSGIPGAKGAEVRNEKLADFIARNYLAEPDGRWFFQNGPQRVYVELESTPWIWRLRWDGERLQMHSHTGAELQAADIKEVLMDETGRLYLAMPSGLGLVHTQDMVDAAAALDAGMLPACEEVPAQTLPQRYGFVRSPARA</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-01-19" version="62" xmlns="http://uniprot.org/uniprot">
    <accession>A9BPV9</accession>
    <name>A9BPV9_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="7">P-type conjugative transfer protein TrbL</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ordered locus">Daci_0432</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="8" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX33078.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012202369.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_0432"/>
    <dbReference type="EnsemblBacteria" id="ABX33078">
        <property type="protein sequence ID" value="ABX33078"/>
        <property type="gene ID" value="Daci_0432"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_0432"/>
    <dbReference type="eggNOG" id="COG3846">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_049867_0_0_4"/>
    <dbReference type="OMA" id="DHATEWG"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030255">
        <property type="term" value="P:protein secretion by the type IV secretion system"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014150">
        <property type="entry name" value="Conjugal_tfr_TrbL"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007688">
        <property type="entry name" value="Conjugal_tfr_TrbL/VirB6"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04610">
        <property type="entry name" value="TrbL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR02783">
        <property type="entry name" value="TrbL_P"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4 6" id="KW-0472">Membrane</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 6" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="3 6" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="29"/>
            <end position="48"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="68"/>
            <end position="89"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="146"/>
            <end position="169"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="176"/>
            <end position="197"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="209"/>
            <end position="228"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="240"/>
            <end position="261"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="273"/>
            <end position="303"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="5">
        <location>
            <begin position="377"/>
            <end position="457"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="5">
        <location>
            <begin position="427"/>
            <end position="457"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="ABX33078.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="457" mass="45646" checksum="9789A6C0D94BFF4E" modified="2008-01-15" version="1">MNDVTIIDRFLDTFSRYIDSGFGLLHGEVAFLTATLIVIDMTIAGLFWAMGHAVGQGEDVIAKLIRKVLYVGAFAYIIGNFNTLAGILFRSFAGLGLTASGSTLSMENFLHPGRLAKVGIDAGAPILEQIGNMAGFPEVFVNITPIVVMFLAWLIVILCFFVLAIQLFITLIEFKLTTLAGFVLVPFALWNKTAFLAEKVLGNVVSSGIKVLVLAVIVGIGSGLFAEFQVHPAEPSIDHSVVVMLASLTLLALGIFGPGIATGLVSGGPQLGAGAMAGAALGAAGAAVAVGAAATGVGGAVAAGARMAPAAAKLAGSGARAAAGAASSARSAFQAGSASAGGGLKGAAAGFGNVAKTGAQAAGQKVADGARSMKERAAAAFRQEGTTSAGGGTAAASGGPASGGDTPSTAPQEQPAWAKRLHRRQQLTHAATTAAHTLRGGDGGSSSQGPSLRDSDS</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="63" xmlns="http://uniprot.org/uniprot">
    <accession>A9BQ35</accession>
    <name>A9BQ35_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="12">MotA/TolQ/ExbB proton channel</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="12" type="ordered locus">Daci_0604</name>
    </gene>
    <organism evidence="12 13">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="12 13" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="13">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="13" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="13">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the MotA family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX33250.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012202536.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_0604"/>
    <dbReference type="PRIDE" id="A9BQ35"/>
    <dbReference type="EnsemblBacteria" id="ABX33250">
        <property type="protein sequence ID" value="ABX33250"/>
        <property type="gene ID" value="Daci_0604"/>
    </dbReference>
    <dbReference type="GeneID" id="60690946"/>
    <dbReference type="KEGG" id="dac:Daci_0604"/>
    <dbReference type="eggNOG" id="COG1291">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_068213_0_0_4"/>
    <dbReference type="OMA" id="EIETHHQ"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0097588">
        <property type="term" value="P:archaeal or bacterial-type flagellum-dependent cell motility"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006811">
        <property type="term" value="P:ion transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000540">
        <property type="entry name" value="Flag_MotA_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR022522">
        <property type="entry name" value="Flagellar_motor_stator_MotA"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002898">
        <property type="entry name" value="MotA_ExbB_proton_chnl"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30433:SF4">
        <property type="entry name" value="PTHR30433:SF4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01618">
        <property type="entry name" value="MotA_ExbB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR03818">
        <property type="entry name" value="MotA1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01307">
        <property type="entry name" value="MOTA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="6" id="KW-0283">Flagellar rotation</keyword>
    <keyword evidence="8" id="KW-0406">Ion transport</keyword>
    <keyword evidence="9 10" id="KW-0472">Membrane</keyword>
    <keyword evidence="13" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="5 10" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="7 10" id="KW-1133">Transmembrane helix</keyword>
    <keyword evidence="3" id="KW-0813">Transport</keyword>
    <feature type="transmembrane region" description="Helical" evidence="10">
        <location>
            <begin position="6"/>
            <end position="29"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="10">
        <location>
            <begin position="166"/>
            <end position="187"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="10">
        <location>
            <begin position="199"/>
            <end position="222"/>
        </location>
    </feature>
    <feature type="domain" description="MotA_ExbB" evidence="11">
        <location>
            <begin position="127"/>
            <end position="241"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00008038"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022448"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022779"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00023065"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="11">
        <source>
            <dbReference type="Pfam" id="PF01618"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="EMBL" id="ABX33250.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="13">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="286" mass="30702" checksum="7D411E0C882B1123" modified="2008-01-15" version="1">MLVIIGYIVAFGCIFGTYVLHGGNVQVILKALPFEMVTIGGGAIGAFIVCNQPKVLKATAKAIPGVMKSSRYTKARFMELMALLYEILQKARKEGLMSIESDVEAPNESPIFTKYPELLADHHVVEFLTDYLRMMVSGNLNSHEIESLMDSEIEAHHAEAHAPVNALTRLAGALPAFGIIAAVLGVVNTMGSVGQPPSVLGGMIASALVGTFLGILLAYALVEPMAGLVEQRAQDAAKELECIKTTLLASMQGYNPATAIEFGRKVLFSTERPGFLELETHVKGKK</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="79" xmlns="http://uniprot.org/uniprot">
    <accession>A9BQ77</accession>
    <name>A9BQ77_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">Flagellar motor switch protein FliN</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="10" type="ordered locus">Daci_0646</name>
    </gene>
    <organism evidence="10 11">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="10 11" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="11">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="11" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="11">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Peripheral membrane protein</topology>
            <orientation evidence="1">Cytoplasmic side</orientation>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the FliN/MopA/SpaO family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX33292.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012202578.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_0646"/>
    <dbReference type="PRIDE" id="A9BQ77"/>
    <dbReference type="EnsemblBacteria" id="ABX33292">
        <property type="protein sequence ID" value="ABX33292"/>
        <property type="gene ID" value="Daci_0646"/>
    </dbReference>
    <dbReference type="GeneID" id="60690987"/>
    <dbReference type="KEGG" id="dac:Daci_0646"/>
    <dbReference type="eggNOG" id="COG1886">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_097058_1_0_4"/>
    <dbReference type="OMA" id="THNDIDM"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009425">
        <property type="term" value="C:bacterial-type flagellum basal body"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003774">
        <property type="term" value="F:cytoskeletal motor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0071973">
        <property type="term" value="P:bacterial-type flagellum-dependent cell motility"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006935">
        <property type="term" value="P:chemotaxis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.30.330.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012826">
        <property type="entry name" value="FliN"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001543">
        <property type="entry name" value="FliN-like_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001172">
        <property type="entry name" value="FliN_T3SS_HrcQb"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036429">
        <property type="entry name" value="SpoA-like_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01052">
        <property type="entry name" value="FliMN_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00956">
        <property type="entry name" value="FLGMOTORFLIN"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF101801">
        <property type="entry name" value="SSF101801"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR02480">
        <property type="entry name" value="fliN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="10" id="KW-0966">Cell projection</keyword>
    <keyword evidence="5" id="KW-0145">Chemotaxis</keyword>
    <keyword evidence="10" id="KW-0969">Cilium</keyword>
    <keyword evidence="6" id="KW-0283">Flagellar rotation</keyword>
    <keyword evidence="10" id="KW-0282">Flagellum</keyword>
    <keyword evidence="7" id="KW-0472">Membrane</keyword>
    <keyword evidence="11" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="FliMN_C" evidence="9">
        <location>
            <begin position="61"/>
            <end position="131"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="8">
        <location>
            <begin position="1"/>
            <end position="51"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="8">
        <location>
            <begin position="19"/>
            <end position="36"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004287"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00009226"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00021897"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022500"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022779"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="9">
        <source>
            <dbReference type="Pfam" id="PF01052"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="EMBL" id="ABX33292.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="143" mass="15482" checksum="2A98FB36E2A1D66B" modified="2008-01-15" version="1">MATEDTQKPAGDDPFSGWAEALDEQRERDAKLEEEQGGPLTGEPVRPYAGGADVPVNDINMVLDIPVQLSVELGRTKVPIKYILQLAQGSVVELDALAGEPMDVLVNGYLIAQGEVVVVNDKFGIRLTDVVTPSERLRRVSRG</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="53" xmlns="http://uniprot.org/uniprot">
    <accession>A9BQH2</accession>
    <name>A9BQH2_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="5">Probable membrane transporter protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="6" type="ordered locus">Daci_0936</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="7" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="5">Cell membrane</location>
            <topology evidence="5">Multi-pass membrane protein</topology>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="5">Belongs to the 4-toluene sulfonate uptake permease (TSUP) (TC 2.A.102) family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX33582.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012202868.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_0936"/>
    <dbReference type="PRIDE" id="A9BQH2"/>
    <dbReference type="EnsemblBacteria" id="ABX33582">
        <property type="protein sequence ID" value="ABX33582"/>
        <property type="gene ID" value="Daci_0936"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_0936"/>
    <dbReference type="eggNOG" id="COG0730">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_054750_3_0_4"/>
    <dbReference type="OMA" id="HIDWRAV"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002781">
        <property type="entry name" value="TM_pro_TauE-like"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01925">
        <property type="entry name" value="TauE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="4 5" id="KW-0472">Membrane</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 5" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="3 5" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="6"/>
            <end position="34"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="46"/>
            <end position="64"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="76"/>
            <end position="95"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="102"/>
            <end position="120"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="132"/>
            <end position="151"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="172"/>
            <end position="190"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="196"/>
            <end position="215"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="227"/>
            <end position="248"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="RuleBase" id="RU363041"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="ABX33582.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="278" mass="29501" checksum="1F1AE0F6461EDA5C" modified="2008-01-15" version="1">MSVIQYVMFLALVGLATFCQNLTGFAFGLIFVGVAGATHLMGIGDAANVACLLSVVNGVAYLRAHRQVPQWTLLKPMLISSVIGVIGGVLLLQWLSGNALSGLRMLLGLAIVACALLLLLQKQVNAQVSGPVSLWVAGVASGVLGGLFATPGPPMVYHLYRQPLDRLVVRQCLFAMFLTCALLRLAMVAWEGEITASVLLAAALAFPVVTVVTWLHMRHPPALPKRLVEWMVCLLLVLSGTSLLVSGWNASHPQPVVPDDEMAMAVPQRSPAAAPAPR</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="58" xmlns="http://uniprot.org/uniprot">
    <accession>A9BQH3</accession>
    <name>A9BQH3_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Nucleotidyl transferase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Daci_0937</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="4" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX33583.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_0937"/>
    <dbReference type="PRIDE" id="A9BQH3"/>
    <dbReference type="EnsemblBacteria" id="ABX33583">
        <property type="protein sequence ID" value="ABX33583"/>
        <property type="gene ID" value="Daci_0937"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_0937"/>
    <dbReference type="eggNOG" id="COG1208">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_029499_2_1_4"/>
    <dbReference type="OMA" id="INHAHLG"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016740">
        <property type="term" value="F:transferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.550.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025877">
        <property type="entry name" value="MobA-like_NTP_Trfase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029044">
        <property type="entry name" value="Nucleotide-diphossugar_trans"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12804">
        <property type="entry name" value="NTP_transf_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53448">
        <property type="entry name" value="SSF53448"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1 3" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="NTP_transf_3" evidence="2">
        <location>
            <begin position="34"/>
            <end position="146"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF12804"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ABX33583.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="272" mass="29329" checksum="2116DFC8F4402A8D" modified="2008-01-15" version="1">MAAGNGLQLPSMTAQPIPPFPAAKALSLTEQPPAMLLAAGRGERMRPLTDTCPKPLLQVQGRPLLQHHLQALAQAGVRRAVVNTGWLGAQIPARFGPQFVPDNGGEPLQLAYSPEPEQALETAGGIARALPLLGDVFWLAAGDVYAPDFDFPFEAAREFAASGRLAHLWLVPNPEHHRRGDFGVDELGLACDWPEGDARPRQTYGTIALLRAELFAAPWCDIPPGNPEGWRVPLVLLLRRAMAAGQVGASPYTGRWTDVGTPERLERLNARG</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="42" xmlns="http://uniprot.org/uniprot">
    <accession>A9BQK1</accession>
    <name>A9BQK1_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Daci_0056</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="2" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX32703.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012201996.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_0056"/>
    <dbReference type="PRIDE" id="A9BQK1"/>
    <dbReference type="EnsemblBacteria" id="ABX32703">
        <property type="protein sequence ID" value="ABX32703"/>
        <property type="gene ID" value="Daci_0056"/>
    </dbReference>
    <dbReference type="GeneID" id="60690461"/>
    <dbReference type="KEGG" id="dac:Daci_0056"/>
    <dbReference type="eggNOG" id="ENOG5033TJ0">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_1394249_0_0_4"/>
    <dbReference type="OMA" id="LMRPCDI"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ABX32703.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="195" mass="21487" checksum="A60E9D2FEE9FC8F1" modified="2008-01-15" version="1">MTAPDTTDESAFDLRARAELALAFDPGPHGEPPAHLLRHTPWHARSGVRRLIAALLVGSSAATAVFAMRPPELVRAAIEHEYYERTLRGSFMPEAEVARRMDLPAGEKLPGYTQLMRPCDIDGTRAYHLTTFFEKGGIVTVLAFDQPQRLADGQGWWANMHWQVVRSREGRPLVLVAQKKQALAVASKALGTPAP</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="77" xmlns="http://uniprot.org/uniprot">
    <accession>A9BQM5</accession>
    <name>A9BQM5_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="8">ABC transporter related</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="8" type="ordered locus">Daci_0080</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="9" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX32727.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012202020.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_0080"/>
    <dbReference type="EnsemblBacteria" id="ABX32727">
        <property type="protein sequence ID" value="ABX32727"/>
        <property type="gene ID" value="Daci_0080"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_0080"/>
    <dbReference type="eggNOG" id="COG0411">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_000604_1_2_4"/>
    <dbReference type="OMA" id="EVAMCLA"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003593">
        <property type="entry name" value="AAA+_ATPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003439">
        <property type="entry name" value="ABC_transporter-like_ATP-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR032823">
        <property type="entry name" value="BCA_ABC_TP_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00005">
        <property type="entry name" value="ABC_tran"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12399">
        <property type="entry name" value="BCA_ABC_TP_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00382">
        <property type="entry name" value="AAA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50893">
        <property type="entry name" value="ABC_TRANSPORTER_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3 6" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="1" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="5" id="KW-0472">Membrane</keyword>
    <keyword evidence="2 6" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4" id="KW-1278">Translocase</keyword>
    <feature type="domain" description="ABC transporter" evidence="7">
        <location>
            <begin position="7"/>
            <end position="249"/>
        </location>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <begin position="39"/>
            <end position="46"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022967"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00434"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="PROSITE" id="PS50893"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="ABX32727.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="252" mass="26548" checksum="0461F41D716DE2ED" modified="2008-01-15" version="1">MADAALLSVRGLTRRFGGLTAVGGVDLDLHEGEVHAVIGTNGAGKSTLVNMLSGELAASAGRIALAGQDVTRMPQPRRARAGVGRSYQRTTIFPEFSALENCRLAAQAQMALRPWQLGLSAQRCAASVRQAHAALERAGLAGQAQAVAGTLSHGAKRQLEVAMCLATGPRVLLLDEPLAGMGAEETERMLALLQELKRGHAVLLVEHDMDAVFRIADRITVMVNGSVVATGTPAQIRVDPVVRTAYLGEDDD</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="66" xmlns="http://uniprot.org/uniprot">
    <accession>A9BQX0</accession>
    <name>A9BQX0_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">2-nitropropane dioxygenase NPD</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_0279</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX32925.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012202218.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_0279"/>
    <dbReference type="PRIDE" id="A9BQX0"/>
    <dbReference type="EnsemblBacteria" id="ABX32925">
        <property type="protein sequence ID" value="ABX32925"/>
        <property type="gene ID" value="Daci_0279"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_0279"/>
    <dbReference type="eggNOG" id="COG2070">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_038732_5_0_4"/>
    <dbReference type="OMA" id="MDNARPF"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051213">
        <property type="term" value="F:dioxygenase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0018580">
        <property type="term" value="F:nitronate monooxygenase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd04730">
        <property type="entry name" value="NPD_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.20.20.70">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013785">
        <property type="entry name" value="Aldolase_TIM"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004136">
        <property type="entry name" value="NMO"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03060">
        <property type="entry name" value="NMO"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0223">Dioxygenase</keyword>
    <keyword evidence="2" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="NMO" evidence="1">
        <location>
            <begin position="11"/>
            <end position="347"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF03060"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX32925.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="357" mass="36583" checksum="D6B1F7D2F5B38C0D" modified="2008-01-15" version="1">MSTEKTAWMARLGMRHPIIQAPMAGTSTPALAAAVTEAGGLGSLGIGASGTEQARQQIVQTRALTSGAFNVNLFCHRPARADAQREAAWLAHLAPEFARFGAKPPAGLNEIYATAVGNAALQAMLLQERPAVVSFHFGLPEQGFIDALRAAGVVTLASATSLDEARQVEQAGVDAIVAQGVEAGGHRGTFDPAQDRMMGTFALVRVLARNTALPVIAAGGIMDGEGIAAALGLGACAAQLGTAFILCPESSASPAFRAELRSERAHHTGITAAISGRPARGMVNRLHALGASHGQPLPDYPRVYDAGKALHQAASAQGSSDYAAHWAGQGAPLAREMPAAALVQTLAGELASAQAGR</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="50" xmlns="http://uniprot.org/uniprot">
    <accession>A9BR59</accession>
    <name>A9BR59_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_0471</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX33117.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012202403.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_0471"/>
    <dbReference type="PRIDE" id="A9BR59"/>
    <dbReference type="EnsemblBacteria" id="ABX33117">
        <property type="protein sequence ID" value="ABX33117"/>
        <property type="gene ID" value="Daci_0471"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_0471"/>
    <dbReference type="eggNOG" id="COG5569">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_140852_2_0_4"/>
    <dbReference type="OMA" id="MTMELAL"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.50.320">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR021647">
        <property type="entry name" value="CusF_Ec"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR042230">
        <property type="entry name" value="CusF_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF11604">
        <property type="entry name" value="CusF_Ec"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="1">
        <location>
            <begin position="1"/>
            <end position="21"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5002735000" evidence="1">
        <location>
            <begin position="22"/>
            <end position="145"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX33117.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="145" mass="15338" checksum="04B9135E841492E1" modified="2008-01-15" version="1">MKLVSTATLIAALSFSAITFAQSGDMGGMKMEGKGMQNCMDMKGMKGMDMKDMDAKKCQDMMKGMDAKGTAKSAAHEADAVVKEFDAVQGKVTLAHGPVKSLGWPAMTMAFGVKDKALYDKLAVGAKVHVGFKKEGDGYVVTSVK</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="76" xmlns="http://uniprot.org/uniprot">
    <accession>A9BR72</accession>
    <name>A9BR72_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="7">Periplasmic mercury ion-binding protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="7" type="primary">merP</name>
        <name evidence="10" type="ordered locus">Daci_0484</name>
    </gene>
    <organism evidence="10 11">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="10 11" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="11">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="11" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="11">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="7">Involved in mercury resistance. Acts as a mercury scavenger that specifically binds to a mercuric ion in the periplasm and probably passes it to the cytoplasmic mercuric reductase MerA via the mercuric transport protein MerT.</text>
    </comment>
    <comment type="subunit">
        <text evidence="3">Monomer.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1 7">Periplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the MerP family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX33130.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012202416.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_0484"/>
    <dbReference type="EnsemblBacteria" id="ABX33130">
        <property type="protein sequence ID" value="ABX33130"/>
        <property type="gene ID" value="Daci_0484"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_0484"/>
    <dbReference type="eggNOG" id="COG2608">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_134973_2_1_4"/>
    <dbReference type="OMA" id="FTPFTWA"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0042597">
        <property type="term" value="C:periplasmic space"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0045340">
        <property type="term" value="F:mercury ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015097">
        <property type="term" value="F:mercury ion transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd00371">
        <property type="entry name" value="HMA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017969">
        <property type="entry name" value="Heavy-metal-associated_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006121">
        <property type="entry name" value="HMA_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036163">
        <property type="entry name" value="HMA_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011795">
        <property type="entry name" value="MerP"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001802">
        <property type="entry name" value="MerP/CopZ"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00403">
        <property type="entry name" value="HMA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00946">
        <property type="entry name" value="HGSCAVENGER"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55008">
        <property type="entry name" value="SSF55008"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR02052">
        <property type="entry name" value="MerP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01047">
        <property type="entry name" value="HMA_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50846">
        <property type="entry name" value="HMA_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="7" id="KW-0475">Mercuric resistance</keyword>
    <keyword evidence="7" id="KW-0476">Mercury</keyword>
    <keyword evidence="4 7" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="6 7" id="KW-0574">Periplasm</keyword>
    <keyword evidence="11" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="5 8" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="8">
        <location>
            <begin position="1"/>
            <end position="20"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5002735002" description="Periplasmic mercury ion-binding protein" evidence="8">
        <location>
            <begin position="21"/>
            <end position="92"/>
        </location>
    </feature>
    <feature type="domain" description="HMA" evidence="9">
        <location>
            <begin position="24"/>
            <end position="90"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004418"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00005938"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00011245"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022729"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022764"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="RuleBase" id="RU361212"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="9">
        <source>
            <dbReference type="PROSITE" id="PS50846"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="EMBL" id="ABX33130.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="92" mass="9489" checksum="EC072B37AD1AF704" modified="2008-01-15" version="1">MKKLATAIALAVTLGAPAWAATKTVTLSVPDMTCASCPITVKMALFKVAGVQKTEVSYEKREAVVTFDDAKTNAGALAKATANAGYPATVKQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="47" xmlns="http://uniprot.org/uniprot">
    <accession>A9BRD0</accession>
    <name>A9BRD0_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ordered locus">Daci_0542</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="5" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX33188.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012202474.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_0542"/>
    <dbReference type="PRIDE" id="A9BRD0"/>
    <dbReference type="EnsemblBacteria" id="ABX33188">
        <property type="protein sequence ID" value="ABX33188"/>
        <property type="gene ID" value="Daci_0542"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_0542"/>
    <dbReference type="eggNOG" id="COG0845">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="eggNOG" id="COG2888">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_777730_0_0_4"/>
    <dbReference type="OMA" id="WPFVWGF"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="3" id="KW-0472">Membrane</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="3" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="3">
        <location>
            <begin position="16"/>
            <end position="35"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="3">
        <location>
            <begin position="182"/>
            <end position="201"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="3">
        <location>
            <begin position="208"/>
            <end position="231"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="3">
        <location>
            <begin position="237"/>
            <end position="258"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="350"/>
            <end position="374"/>
        </location>
    </feature>
    <feature type="coiled-coil region" evidence="1">
        <location>
            <begin position="63"/>
            <end position="97"/>
        </location>
    </feature>
    <feature type="coiled-coil region" evidence="1">
        <location>
            <begin position="124"/>
            <end position="158"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="ABX33188.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="374" mass="41618" checksum="17FD553028BAFA2C" modified="2008-01-15" version="1">MSKALRLPEKWFRRGLWLVAVVFASFLIGLGGLVVGDLPQVESPRTVEDFIAPAAAEPVKAEIKAADADHDKAETALQNARLKYQATQARYRSARETFDNWVATRRATARPEQDSELLSRTQALDAIKQEENAARAAVERLQDASLQARQRLDAANRQWDGLRDGAMQAWRKEMRAIELRVFLYRLALTLPLLLVAGWLFAKQRKSTWWPFVWGFIFFALFAFFVELVPYLPDYGGYVRYVVGIVVTVLLGRAAILGLNRYLERQKQQESLPETQRRQELGYDVALARLAKGVCPGCERPVDLKDGAIDFCPHCGIGLFDRCGSCNTRKSAFVHYCHSCGTQADGNRRKPGAVLPSTSAAPAVPPVQEAGPAAG</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="76" xmlns="http://uniprot.org/uniprot">
    <accession>A9BRG5</accession>
    <name>A9BRG5_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="1 2">RNA 3'-terminal phosphate cyclase</fullName>
            <shortName evidence="2">RNA cyclase</shortName>
            <shortName evidence="2">RNA-3'-phosphate cyclase</shortName>
            <ecNumber evidence="2">6.5.1.4</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="primary">rtcA</name>
        <name evidence="4" type="ordered locus">Daci_0680</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="5" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="2">Catalyzes the conversion of 3'-phosphate to a 2',3'-cyclic phosphodiester at the end of RNA. The mechanism of action of the enzyme occurs in 3 steps: (A) adenylation of the enzyme by ATP; (B) transfer of adenylate to an RNA-N3'P to produce RNA-N3'PP5'A; (C) and attack of the adjacent 2'-hydroxyl on the 3'-phosphorus in the diester linkage to produce the cyclic end product. The biological role of this enzyme is unknown but it is likely to function in some aspects of cellular RNA processing.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="2">
            <text>a 3'-end 3'-phospho-ribonucleotide-RNA + ATP = a 3'-end 2',3'-cyclophospho-ribonucleotide-RNA + AMP + diphosphate</text>
            <dbReference type="Rhea" id="RHEA:23976"/>
            <dbReference type="Rhea" id="RHEA-COMP:10463"/>
            <dbReference type="Rhea" id="RHEA-COMP:10464"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:33019"/>
            <dbReference type="ChEBI" id="CHEBI:83062"/>
            <dbReference type="ChEBI" id="CHEBI:83064"/>
            <dbReference type="ChEBI" id="CHEBI:456215"/>
            <dbReference type="EC" id="6.5.1.4"/>
        </reaction>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="2">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the RNA 3'-terminal cyclase family. Type 1 subfamily.</text>
    </comment>
    <dbReference type="EC" id="6.5.1.4" evidence="2"/>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX33326.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012202612.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_0680"/>
    <dbReference type="PRIDE" id="A9BRG5"/>
    <dbReference type="EnsemblBacteria" id="ABX33326">
        <property type="protein sequence ID" value="ABX33326"/>
        <property type="gene ID" value="Daci_0680"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_0680"/>
    <dbReference type="eggNOG" id="COG0430">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_027882_0_0_4"/>
    <dbReference type="OMA" id="PKPGLSH"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003963">
        <property type="term" value="F:RNA-3'-phosphate cyclase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006396">
        <property type="term" value="P:RNA processing"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.360.20">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.65.10.20">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00200">
        <property type="entry name" value="RTC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023797">
        <property type="entry name" value="RNA3'_phos_cyclase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037136">
        <property type="entry name" value="RNA3'_phos_cyclase_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000228">
        <property type="entry name" value="RNA3'_term_phos_cyc"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017770">
        <property type="entry name" value="RNA3'_term_phos_cyc_type_1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013792">
        <property type="entry name" value="RNA3'P_cycl/enolpyr_Trfase_a/b"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036553">
        <property type="entry name" value="RPTC_insert"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11096">
        <property type="entry name" value="PTHR11096"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11096:SF0">
        <property type="entry name" value="PTHR11096:SF0"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01137">
        <property type="entry name" value="RTC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF005378">
        <property type="entry name" value="RNA3'_term_phos_cycl_euk"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52913">
        <property type="entry name" value="SSF52913"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55205">
        <property type="entry name" value="SSF55205"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR03399">
        <property type="entry name" value="RNA_3prim_cycl"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="2" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="2 4" id="KW-0436">Ligase</keyword>
    <keyword evidence="2" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="RTC" evidence="3">
        <location>
            <begin position="11"/>
            <end position="332"/>
        </location>
    </feature>
    <feature type="active site" description="Tele-AMP-histidine intermediate" evidence="2">
        <location>
            <position position="315"/>
        </location>
    </feature>
    <feature type="binding site" evidence="2">
        <location>
            <position position="102"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="2">
        <location>
            <begin position="285"/>
            <end position="289"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00021428"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00200"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF01137"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="ABX33326.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="347" mass="37130" checksum="90B9EB608E411CC9" modified="2008-01-15" version="1">MKVIEIDGSAGEGGGQMLRSALALSMCTGQPFAMQHIRAGRAKPGLMRQHLACVNAAAEICGAQMQGAEMNSQALQFTPGPVRAGEYRFVIASAGSCTLLLQTLWPALMLADGESRLTLGGGTHNPAAPPFHFLERSYAPLLHRLGARCELRLRRLGFYPAGGGEMDVTITPATNGLVPFDITERGAPVASHAECFAPALPRAVAQRELDHLGQALGWSGEQLQVAAVRQNEGPGNALLATLAYEHLSEVFTQFGMKGISAEKVAHDLAREVRRHQGSRAALGPYLADQWALPLALAVWRSGRGASYTCTELTRHARSNFEVIERFVPVRFATDAGGDGWRVSLSPA</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="68" xmlns="http://uniprot.org/uniprot">
    <accession>A9BSN6</accession>
    <name>A9BSN6_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Enoyl-CoA hydratase/isomerase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Daci_1397</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="4" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1 2">Belongs to the enoyl-CoA hydratase/isomerase family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX34041.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012203327.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_1397"/>
    <dbReference type="PRIDE" id="A9BSN6"/>
    <dbReference type="EnsemblBacteria" id="ABX34041">
        <property type="protein sequence ID" value="ABX34041"/>
        <property type="gene ID" value="Daci_1397"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_1397"/>
    <dbReference type="eggNOG" id="COG1024">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_009834_7_2_4"/>
    <dbReference type="OMA" id="ADHKEAA"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016853">
        <property type="term" value="F:isomerase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.12.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029045">
        <property type="entry name" value="ClpP/crotonase-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018376">
        <property type="entry name" value="Enoyl-CoA_hyd/isom_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001753">
        <property type="entry name" value="Enoyl-CoA_hydra/iso"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014748">
        <property type="entry name" value="Enoyl-CoA_hydra_C"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00378">
        <property type="entry name" value="ECH_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52096">
        <property type="entry name" value="SSF52096"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00166">
        <property type="entry name" value="ENOYL_COA_HYDRATASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-0413">Isomerase</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00005254"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="RuleBase" id="RU003707"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ABX34041.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="266" mass="28149" checksum="706A702DA2974D2F" modified="2008-01-15" version="1">MTEANQVLLTRREGAVLVLSNNNVAARNALSPEFYAAVSAALKSAATDPTVGAVVLTGEGGHFCAGGDLRQLAKRRELPVQERRAKLEGLHDLIRSVRDFPKPVIAAVEGAAAGAGLSLALACDMLVAAKNAVFSVAYVKVGLTPDGGATAFLAEFVSRQVLTELCLTGERISGERLHALGPVNRLSEPGQAQADAVALAAQVATGPDQAMALIKDLCRQAPRNTLEEQLELEAQYMVRSQESEESREGIGAFLEKRSADFTKLRS</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-01-19" version="63" xmlns="http://uniprot.org/uniprot">
    <accession>A9BSP1</accession>
    <name>A9BSP1_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Electron transfer flavoprotein alpha/beta-subunit</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ordered locus">Daci_1402</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="5" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the ETF beta-subunit/FixA family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX34046.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012203332.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_1402"/>
    <dbReference type="EnsemblBacteria" id="ABX34046">
        <property type="protein sequence ID" value="ABX34046"/>
        <property type="gene ID" value="Daci_1402"/>
    </dbReference>
    <dbReference type="GeneID" id="60685961"/>
    <dbReference type="KEGG" id="dac:Daci_1402"/>
    <dbReference type="eggNOG" id="COG2086">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_060196_0_0_4"/>
    <dbReference type="OMA" id="YNGGMVP"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009055">
        <property type="term" value="F:electron transfer activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd01714">
        <property type="entry name" value="ETF_beta"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.620">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000049">
        <property type="entry name" value="ET-Flavoprotein_bsu_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014730">
        <property type="entry name" value="ETF_a/b_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012255">
        <property type="entry name" value="ETF_b"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR033948">
        <property type="entry name" value="ETF_beta_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014729">
        <property type="entry name" value="Rossmann-like_a/b/a_fold"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR21294">
        <property type="entry name" value="PTHR21294"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01012">
        <property type="entry name" value="ETF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF000090">
        <property type="entry name" value="Beta-ETF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00893">
        <property type="entry name" value="ETF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01065">
        <property type="entry name" value="ETF_BETA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2" id="KW-0249">Electron transport</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0813">Transport</keyword>
    <feature type="domain" description="ETF" evidence="3">
        <location>
            <begin position="23"/>
            <end position="211"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00007557"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022982"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="SMART" id="SM00893"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="ABX34046.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="249" mass="26636" checksum="99AFD115862B13B5" modified="2008-01-15" version="1">MKILVPVKRVVDYNVKVRVKSDGTGVDIANVKMSMNPFDEIAVEEAVRLKEKGVATEVIAVSCGVAQCQETLRTAMAIGADRGILVETTEELQPLAVAKLLKALVDKEQPGLIILGKQAIDDDANQTGQMLAALADLPQATFASKVEVAGDKVNVTREVDGGLETLALSLPAVITTDLRLNEPRYVTLPNIMKAKKKQLDTVKPEELGVDVAPRLKTLKVAEPAKRGAGVKVPDVATLVSKLKNEAKVI</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="34" xmlns="http://uniprot.org/uniprot">
    <accession>A9BT51</accession>
    <name>A9BT51_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Daci_1976</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="2" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX34616.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_1976"/>
    <dbReference type="PRIDE" id="A9BT51"/>
    <dbReference type="EnsemblBacteria" id="ABX34616">
        <property type="protein sequence ID" value="ABX34616"/>
        <property type="gene ID" value="Daci_1976"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_1976"/>
    <dbReference type="eggNOG" id="ENOG5032SA2">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_1728392_0_0_4"/>
    <dbReference type="OMA" id="ARIFYVI"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ABX34616.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="151" mass="16615" checksum="F1038DB7055E51BC" modified="2008-01-15" version="1">MALAWATALAAHAEVARLDDSASPRSQVRSDFARARVVGERLLELPMGRIEYRLATAPHVGRTARIFYVIPALVTGLRSPAGMQVQWRGNGVFAGGTGRPGDRVQVWNGVVRTPWMAEVFDLTLHIDPAELRLTRGSALSFESYFEIETLP</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2021-09-29" version="38" xmlns="http://uniprot.org/uniprot">
    <accession>A9BT52</accession>
    <name>A9BT52_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">Ig-like domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Daci_1977</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="4" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX34617.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012203902.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_1977"/>
    <dbReference type="EnsemblBacteria" id="ABX34617">
        <property type="protein sequence ID" value="ABX34617"/>
        <property type="gene ID" value="Daci_1977"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_1977"/>
    <dbReference type="eggNOG" id="ENOG5033NR8">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_1330134_0_0_4"/>
    <dbReference type="OMA" id="QNGRFTA"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007110">
        <property type="entry name" value="Ig-like_dom"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50835">
        <property type="entry name" value="IG_LIKE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="1">
        <location>
            <begin position="1"/>
            <end position="23"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5002735071" description="Ig-like domain-containing protein" evidence="1">
        <location>
            <begin position="24"/>
            <end position="206"/>
        </location>
    </feature>
    <feature type="domain" description="Ig-like" evidence="2">
        <location>
            <begin position="72"/>
            <end position="176"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS50835"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ABX34617.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="206" mass="20757" checksum="13EDFDCEA35CB82A" modified="2008-01-15" version="1">MDKALPRLLAAAALCVVQPPAQAVFTIVTDTDLLNYSLTLRVGTSGATVDTVAFSVTGANAGLTPVAVTGTPSISVSVSPTRPALGTAVARPVTLVVDSSTALSCQSGGCGSATIPFSKISWVASNNGNAASGDIQNGRFTASAGQSIASYNANASVCSGALCPVAGWTVQSRQLTGTVLQFTYDNDVVYPGGNYKGTVRFTASMV</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2021-06-02" version="73" xmlns="http://uniprot.org/uniprot">
    <accession>A9BTP8</accession>
    <name>A9BTP8_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="6">Phosphonate ABC transporter, inner membrane subunit</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ordered locus">Daci_2674</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="7" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="4">Cell membrane</location>
            <topology evidence="4">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="4">Belongs to the binding-protein-dependent transport system permease family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX35312.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_003056093.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_2674"/>
    <dbReference type="EnsemblBacteria" id="ABX35312">
        <property type="protein sequence ID" value="ABX35312"/>
        <property type="gene ID" value="Daci_2674"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_2674"/>
    <dbReference type="eggNOG" id="COG3639">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_064254_1_1_4"/>
    <dbReference type="OMA" id="SMRMFAG"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005887">
        <property type="term" value="C:integral component of plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015416">
        <property type="term" value="F:ABC-type phosphonate transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd06261">
        <property type="entry name" value="TM_PBP2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.3720.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000515">
        <property type="entry name" value="MetI-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035906">
        <property type="entry name" value="MetI-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005769">
        <property type="entry name" value="PhnE/PtxC"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00528">
        <property type="entry name" value="BPD_transp_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF161098">
        <property type="entry name" value="SSF161098"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01097">
        <property type="entry name" value="PhnE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50928">
        <property type="entry name" value="ABC_TM1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3 4" id="KW-0472">Membrane</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1 4" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="2 4" id="KW-1133">Transmembrane helix</keyword>
    <keyword evidence="4" id="KW-0813">Transport</keyword>
    <feature type="transmembrane region" description="Helical" evidence="4">
        <location>
            <begin position="20"/>
            <end position="41"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="4">
        <location>
            <begin position="79"/>
            <end position="101"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="4">
        <location>
            <begin position="127"/>
            <end position="150"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="4">
        <location>
            <begin position="214"/>
            <end position="235"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="4">
        <location>
            <begin position="241"/>
            <end position="261"/>
        </location>
    </feature>
    <feature type="domain" description="ABC transmembrane type-1" evidence="5">
        <location>
            <begin position="75"/>
            <end position="258"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="RuleBase" id="RU363032"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="PROSITE" id="PS50928"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="ABX35312.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="266" mass="28642" checksum="251F4E91C035A5EC" modified="2008-01-15" version="1">MTSAAFENIISRDKREQFIGLRNTAFVLLVCLVALYVTGFFDAQRFIEGAPAVKQLSSEMVPPNFDRWEHWVIPLRDTLAMSIAGTALTIVLSLPLALLAAPNTTPNPLVGRVARVILAAFRSVPEIILGILFVAAVGFGALPGVLALALHSTGMVAKFYAEAIEHVDPKPLEAAAAVGASRFQVISHAVIPQVLPQLADITIYRWEYHFRASAVLGIVGAGGIGFELMAALRLVKYDEVSAILLSILACVLVVDSIGSMLRKRLK</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="51" xmlns="http://uniprot.org/uniprot">
    <accession>A9BTX2</accession>
    <name>A9BTX2_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_2748</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX35386.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012204596.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_2748"/>
    <dbReference type="PRIDE" id="A9BTX2"/>
    <dbReference type="EnsemblBacteria" id="ABX35386">
        <property type="protein sequence ID" value="ABX35386"/>
        <property type="gene ID" value="Daci_2748"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_2748"/>
    <dbReference type="eggNOG" id="ENOG5030U1K">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_130831_0_0_4"/>
    <dbReference type="OMA" id="LNWPEVT"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="43"/>
            <end position="65"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX35386.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="160" mass="17629" checksum="CE320C353F7604F0" modified="2008-01-15" version="1">MNLRTLSLLITVALIALLAAFNWNTLAAPSVVSLGVTEVQAPLGVLMLALTCLLGVFFVAYVLWLQGSVLMEARRHAKEMQAQRDLADKAEASRFTELRTVLEDLHARDKEVLLARLDGLEAHLVQRAQESDNSTAAYVGQLEQQVRLYQQPGAGAPDYR</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="85" xmlns="http://uniprot.org/uniprot">
    <accession>A9BTX8</accession>
    <name>A9BTX8_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="5">Sensor protein QseC</fullName>
            <ecNumber evidence="4">2.7.13.3</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="12" type="ordered locus">Daci_2754</name>
    </gene>
    <organism evidence="12 13">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="12 13" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="13">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="13" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="13">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>ATP + protein L-histidine = ADP + protein N-phospho-L-histidine.</text>
            <dbReference type="EC" id="2.7.13.3"/>
        </reaction>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="3">Cell inner membrane</location>
            <topology evidence="3">Multi-pass membrane protein</topology>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="2">Membrane</location>
            <topology evidence="2">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <dbReference type="EC" id="2.7.13.3" evidence="4"/>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX35392.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012204602.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_2754"/>
    <dbReference type="PRIDE" id="A9BTX8"/>
    <dbReference type="EnsemblBacteria" id="ABX35392">
        <property type="protein sequence ID" value="ABX35392"/>
        <property type="gene ID" value="Daci_2754"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_2754"/>
    <dbReference type="eggNOG" id="COG2205">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_000445_89_37_4"/>
    <dbReference type="OMA" id="RENIRTH"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000155">
        <property type="term" value="F:phosphorelay sensor kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd00082">
        <property type="entry name" value="HisKA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.565.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013727">
        <property type="entry name" value="2CSK_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003594">
        <property type="entry name" value="HATPase_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036890">
        <property type="entry name" value="HATPase_C_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005467">
        <property type="entry name" value="His_kinase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003661">
        <property type="entry name" value="HisK_dim/P"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036097">
        <property type="entry name" value="HisK_dim/P_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004358">
        <property type="entry name" value="Sig_transdc_His_kin-like_C"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08521">
        <property type="entry name" value="2CSK_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02518">
        <property type="entry name" value="HATPase_c"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00512">
        <property type="entry name" value="HisKA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00344">
        <property type="entry name" value="BCTRLSENSOR"/>
    </dbReference>
    <dbReference type="SMART" id="SM00387">
        <property type="entry name" value="HATPase_c"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00388">
        <property type="entry name" value="HisKA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47384">
        <property type="entry name" value="SSF47384"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55874">
        <property type="entry name" value="SSF55874"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50109">
        <property type="entry name" value="HIS_KIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="12" id="KW-0418">Kinase</keyword>
    <keyword evidence="9 10" id="KW-0472">Membrane</keyword>
    <keyword evidence="6" id="KW-0597">Phosphoprotein</keyword>
    <keyword evidence="13" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="12" id="KW-0808">Transferase</keyword>
    <keyword evidence="7 10" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="8 10" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="10">
        <location>
            <begin position="23"/>
            <end position="46"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="10">
        <location>
            <begin position="175"/>
            <end position="195"/>
        </location>
    </feature>
    <feature type="domain" description="Histidine kinase" evidence="11">
        <location>
            <begin position="259"/>
            <end position="481"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00000085"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00004429"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00012438"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00017234"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022553"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="11">
        <source>
            <dbReference type="PROSITE" id="PS50109"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="EMBL" id="ABX35392.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="13">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="491" mass="53129" checksum="47ED11D7272337D2" modified="2008-01-15" version="1">MTESSPHLPGWRRWFRLSLKRQVLMPIAALWVASFFIATGAAYWLAGRSTSDAFDRLLADDARALAAQLRWKEGQAYFDASREMADALVFDSLSQNHYGVVTASGRQLIGSLPLPPLLQQESAADASPMFFGHQAASGAALRAVAILVRPQGGGEPVWVVVAESKTKRRQVKDQIATAIFVPAGLAGFIILPLIYHGIRRGLAPARRVSALVVQHGENELSPLSVEDVPEELRDLVAHTNALLLRLKASVDEQRRFIADAAHQLQTPMAGIRLLVGDMRRTQHADPQQPMDAEVLAHLDEVAARGARMVRQLLAYARAEEESVVEDQLFDAAQVARQAALRWQDRADAAGRSLRIEGPEPAATGGASTVRGSPTLLGEVVSNLVDNALRYGGPHVAVQTRVQAHEDLVRIQVSDDGPALDAQTRAQMLLPFWRGDHGQPEGSGLGLSIALRVVQRMGGRLAVHSGPGSRGTCVQIDLPRQHGPSLADVKPT</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="35" xmlns="http://uniprot.org/uniprot">
    <accession>A9BU09</accession>
    <name>A9BU09_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Daci_3086</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="2" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX35724.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="PRIDE" id="A9BU09"/>
    <dbReference type="EnsemblBacteria" id="ABX35724">
        <property type="protein sequence ID" value="ABX35724"/>
        <property type="gene ID" value="Daci_3086"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_3086"/>
    <dbReference type="eggNOG" id="ENOG502ZUFK">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_1259721_0_0_4"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ABX35724.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="219" mass="24277" checksum="9894DA4461EA9B69" modified="2008-01-15" version="1">MKLNLLTLDESDLAALPEGVCIRCLTHPITEMFMALLPAVEINGSSKIAVVLGPQGEAEAFDNVLGVTAVFVEDFDFAHFLAQDRAAQNQQLLELLRQCLMDIANRKGPNPQAVQAINAAADAVVQRQFQLTLPIKKLGKSSRDRKSRVEVFRRLDSEVGEAWYCEVTRAGQSTPQRLWMSDVPGFIDRRDSFKTAEISGNSYIVKSRLGRVVFETPLA</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="66" xmlns="http://uniprot.org/uniprot">
    <accession>A9BUG3</accession>
    <name>A9BUG3_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="1">L-carnitine dehydratase/bile acid-inducible protein F</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Daci_1222</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="2" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX33866.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012203152.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_1222"/>
    <dbReference type="PRIDE" id="A9BUG3"/>
    <dbReference type="EnsemblBacteria" id="ABX33866">
        <property type="protein sequence ID" value="ABX33866"/>
        <property type="gene ID" value="Daci_1222"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_1222"/>
    <dbReference type="eggNOG" id="COG1804">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_033975_0_0_4"/>
    <dbReference type="OMA" id="ADTYRCA"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003824">
        <property type="term" value="F:catalytic activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.1540.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.10540">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003673">
        <property type="entry name" value="CoA-Trfase_fam_III"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR044855">
        <property type="entry name" value="CoA-Trfase_III_dom3_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023606">
        <property type="entry name" value="CoA-Trfase_III_dom_1_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02515">
        <property type="entry name" value="CoA_transf_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF89796">
        <property type="entry name" value="SSF89796"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ABX33866.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="418" mass="43886" checksum="1468F099BCA3C47A" modified="2008-01-15" version="1">MDKPLQGVRVIDMSHVIAGPLASHYLAQLGAEVIKVEPTRGEVMRNSRAPGEPGGGMPSGFVALNAGKRSLAVDIRQPEGADIVRALARTADVFIENFRPGVVARHGLGYEDIRAVRPDVVYCSISGFGQQGEWAGRGAYDHVVQALTGMMMMAGGDEEAPPVKVGFPVIDVAVGMLGALSVTAALHQRNARAPGERRSQHIDASMLQASLMLMYPHACTYLTHGVEPRRVGNRGYTGSPAADTYRCADGWLSTAANTPQQFRRLASVLELDALCEDATLLDLDAFNAPEGGFVAARDASALQRLQACLAEAFAARSARDMEARLNAVGVPAARVRRLGEFLGEARAAGTVSPVSYGAGGAAVDTPGLGFRWVDAEPLPGAPAPALGDGNLALLRELGMTDDAIARLCRSGVLGAPQS</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="62" xmlns="http://uniprot.org/uniprot">
    <accession>A9BUM3</accession>
    <name>A9BUM3_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="6">Peptidase U62 modulator of DNA gyrase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ordered locus">Daci_1487</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="7" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the peptidase U62 family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX34131.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012203417.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_1487"/>
    <dbReference type="PRIDE" id="A9BUM3"/>
    <dbReference type="EnsemblBacteria" id="ABX34131">
        <property type="protein sequence ID" value="ABX34131"/>
        <property type="gene ID" value="Daci_1487"/>
    </dbReference>
    <dbReference type="GeneID" id="60686025"/>
    <dbReference type="KEGG" id="dac:Daci_1487"/>
    <dbReference type="eggNOG" id="COG0312">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_026425_1_0_4"/>
    <dbReference type="OMA" id="TDFWGSM"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008237">
        <property type="term" value="F:metallopeptidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006508">
        <property type="term" value="P:proteolysis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.2290.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045569">
        <property type="entry name" value="Metalloprtase-TldD/E_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045570">
        <property type="entry name" value="Metalloprtase-TldD/E_cen_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002510">
        <property type="entry name" value="Metalloprtase-TldD/E_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025502">
        <property type="entry name" value="TldD"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035068">
        <property type="entry name" value="TldD/PmbA_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036059">
        <property type="entry name" value="TldD/PmbA_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01523">
        <property type="entry name" value="PmbA_TldD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF19289">
        <property type="entry name" value="PmbA_TldD_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF19290">
        <property type="entry name" value="PmbA_TldD_M"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF004919">
        <property type="entry name" value="TldD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF111283">
        <property type="entry name" value="SSF111283"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="PmbA_TldD" evidence="3">
        <location>
            <begin position="44"/>
            <end position="103"/>
        </location>
    </feature>
    <feature type="domain" description="PmbA_TldD_M" evidence="5">
        <location>
            <begin position="135"/>
            <end position="242"/>
        </location>
    </feature>
    <feature type="domain" description="PmbA_TldD_C" evidence="4">
        <location>
            <begin position="251"/>
            <end position="484"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00005836"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF01523"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="Pfam" id="PF19289"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="Pfam" id="PF19290"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="ABX34131.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="486" mass="51481" checksum="E7801AC9F5E4FFD0" modified="2008-01-15" version="1">MISREPTIERLATARQLLLEPFGLDETHLARALAEIRSHQVDDADLYFQYTRAEGWSLEEGIVKTGSFSIDQGVGVRAVSGEKTAFAYSDDISEASLLDAARTVRSISGAAQSKRVRANAPKIAQSRSLYPGLDPIATLDSTAKVELLGKVEKLARAKDPRVVQVMAGLASEYDVVLVARADGTLAADVRPLVRLSVTVIAEQKGRREVGSAGGGGRFGLAYFSDEQITQYVDEAVSAALTNLESRPAPAGEMTVVLGPGWPGVLLHEAVGHGLEGDFNRKGASAFSGRIGQRVAAKGVTVLDDGTLADRRGSLNVDDEGCTSQSNVLIEDGILKGYIQDAMNARLMGVKPTGNGRRESYAHIPMPRMTNTYMLGGDREPQEIVASIKKGLYATNFGGGQVDITSGKFVFSASEAYWVENGKIQYPVKGATIVGSGPESLKHITMIGNDMRLDSGVGTCGKEGQSVPVGVGQPTLRIDGLTVGGTA</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2021-06-02" version="55" xmlns="http://uniprot.org/uniprot">
    <accession>A9BUU5</accession>
    <name>A9BUU5_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Malonate decarboxylase, gamma subunit</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Daci_1765</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="2" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX34407.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012203692.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_1765"/>
    <dbReference type="EnsemblBacteria" id="ABX34407">
        <property type="protein sequence ID" value="ABX34407"/>
        <property type="gene ID" value="Daci_1765"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_1765"/>
    <dbReference type="eggNOG" id="COG4799">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_101747_0_0_4"/>
    <dbReference type="OMA" id="MARITKV"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029045">
        <property type="entry name" value="ClpP/crotonase-like_dom_sf"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52096">
        <property type="entry name" value="SSF52096"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ABX34407.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="233" mass="24871" checksum="5C3799D4FB664A4C" modified="2008-01-15" version="1">MQWNTLAEHLFGPGHQIHANGDFLEGHAVFDGQTLAIVGTTGHAPIGVRLALAQARVVLETVGAHPGRPIVLLIDTQGQQLRRHDELLGINRAMAHLGTCIDLARRRGHRVIGLVYDQALSGGFITSGLIADACYALPEAEIRVMRIPAMSRITKLPESLLNALSESNPVFAPGVGNYVAMGGVRGLWQGDLQAALRDALAHSPREDMRALDGAERGGRKLAAEVVQRVLAAG</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="72" xmlns="http://uniprot.org/uniprot">
    <accession>A9BV14</accession>
    <name>A9BV14_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="4 8">6-carboxy-5,6,7,8-tetrahydropterin synthase</fullName>
            <ecNumber evidence="8">4.-.-.-</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="10" type="ordered locus">Daci_1836</name>
    </gene>
    <organism evidence="10 11">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="10 11" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="11">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="11" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="11">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="1 8">
            <text>7,8-dihydroneopterin 3'-triphosphate + H2O = 6-carboxy-5,6,7,8-tetrahydropterin + acetaldehyde + 2 H(+) + triphosphate</text>
            <dbReference type="Rhea" id="RHEA:27966"/>
            <dbReference type="ChEBI" id="CHEBI:15343"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:18036"/>
            <dbReference type="ChEBI" id="CHEBI:58462"/>
            <dbReference type="ChEBI" id="CHEBI:61032"/>
            <dbReference type="EC" id="4.1.2.50"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="8 9">
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </cofactor>
        <text evidence="8 9">Binds 1 zinc ion per subunit.</text>
    </comment>
    <comment type="pathway">
        <text evidence="2 8">Purine metabolism; 7-cyano-7-deazaguanine biosynthesis.</text>
    </comment>
    <comment type="similarity">
        <text evidence="3 8">Belongs to the PTPS family. QueD subfamily.</text>
    </comment>
    <dbReference type="EC" id="4.-.-.-" evidence="8"/>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX34476.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012203761.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_1836"/>
    <dbReference type="PRIDE" id="A9BV14"/>
    <dbReference type="EnsemblBacteria" id="ABX34476">
        <property type="protein sequence ID" value="ABX34476"/>
        <property type="gene ID" value="Daci_1836"/>
    </dbReference>
    <dbReference type="GeneID" id="60686264"/>
    <dbReference type="KEGG" id="dac:Daci_1836"/>
    <dbReference type="eggNOG" id="COG0720">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_111016_6_1_4"/>
    <dbReference type="OMA" id="KCEKLHG"/>
    <dbReference type="UniPathway" id="UPA00391"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0070497">
        <property type="term" value="F:6-carboxy-5,6,7,8-tetrahydropterin synthase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008616">
        <property type="term" value="P:queuosine biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.479.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007115">
        <property type="entry name" value="6-PTP_synth/QueD"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038418">
        <property type="entry name" value="6-PTP_synth/QueD_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR12589">
        <property type="entry name" value="PTHR12589"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01242">
        <property type="entry name" value="PTPS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF006113">
        <property type="entry name" value="PTP_synth"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="7 8" id="KW-0456">Lyase</keyword>
    <keyword evidence="5 8 9" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="8" id="KW-0671">Queuosine biosynthesis</keyword>
    <keyword evidence="11" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="6 8 9" id="KW-0862">Zinc</keyword>
    <feature type="binding site" evidence="9">
        <location>
            <position position="15"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="9">
        <location>
            <position position="30"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="9">
        <location>
            <position position="32"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001293"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00005061"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00008900"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00018141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022833"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023239"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="PIRNR" id="PIRNR006113"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="PIRSR" id="PIRSR006113-2"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="EMBL" id="ABX34476.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="121" mass="13653" checksum="67CC6F10215F409B" modified="2008-01-15" version="1">MQFTVHQRFFFDAAHTLERAIETESSRRIHGHTYYAEVSVTGPRNPDNGMVIDLGYLRSRLKTLGDALDHRFLDEIPGLGKPTLENLCLFIADSLADLQPAPSRIRVWRDSIGDGCVLDLN</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="77" xmlns="http://uniprot.org/uniprot">
    <accession>A9BV16</accession>
    <name>A9BV16_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Chromosome segregation and condensation protein ScpA</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Daci_1838</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="4" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX34478.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_1838"/>
    <dbReference type="PRIDE" id="A9BV16"/>
    <dbReference type="EnsemblBacteria" id="ABX34478">
        <property type="protein sequence ID" value="ABX34478"/>
        <property type="gene ID" value="Daci_1838"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_1838"/>
    <dbReference type="eggNOG" id="COG1354">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_038686_0_1_4"/>
    <dbReference type="OMA" id="YLVMAAM"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0007059">
        <property type="term" value="P:chromosome segregation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.580">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01805">
        <property type="entry name" value="ScpA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003768">
        <property type="entry name" value="ScpA"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023093">
        <property type="entry name" value="ScpA-like_C"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33969">
        <property type="entry name" value="PTHR33969"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02616">
        <property type="entry name" value="SMC_ScpA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="1" id="KW-0159">Chromosome partition</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="1"/>
            <end position="31"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022829"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ABX34478.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="297" mass="33817" checksum="7B24F47BC812D752" modified="2008-01-15" version="1">MRHSPRQQGMAEAESALAPAGASATSPPPGDSTPVVIDQVALARLYGEPLFALPQDLYIPPDALEVFLEAFEGPLDLLLYLIRKQNFNILDIPMLDVTRQYMRYVDEIRSRNLELAAEYLLMAAMLIEIKSRMLLPPKKQEGGEEAEDPRAELVRRLLEYEQIKLAAHQLGQVPHYGRDFLRAQIHIEQNLQPRFPDVDVAELQSAWRDILKRAKLVQSHKITREELSVREYMSQVLKALQGRRFVEFETLFQPEKGSTVLVVTFIALLELAKETLIEITQAEAFAPIYVRLAYTPV</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2021-09-29" version="41" xmlns="http://uniprot.org/uniprot">
    <accession>A9BV20</accession>
    <name>A9BV20_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Daci_1842</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="4" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX34482.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012203767.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_1842"/>
    <dbReference type="EnsemblBacteria" id="ABX34482">
        <property type="protein sequence ID" value="ABX34482"/>
        <property type="gene ID" value="Daci_1842"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_1842"/>
    <dbReference type="eggNOG" id="ENOG50336I0">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_165350_1_0_4"/>
    <dbReference type="OMA" id="EEDHSGI"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="2">
        <location>
            <begin position="1"/>
            <end position="34"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5002735115" evidence="2">
        <location>
            <begin position="35"/>
            <end position="98"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="76"/>
            <end position="98"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ABX34482.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="98" mass="9463" checksum="AAA1D58930D44ED9" modified="2008-01-15" version="1">MKSAKSRKPSRSPALGAFLCLCAGALLSGCTVVAVTATAVSVTASAVGLAADAAVGTAKIVGKGVGKAVDAMSDDGAAADNSGITVRYRTPDGQPLTP</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="79" xmlns="http://uniprot.org/uniprot">
    <accession>A9BV32</accession>
    <name>A9BV32_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="3">(2Fe-2S)-binding domain protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Daci_1854</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="4" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX34494.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012203779.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_1854"/>
    <dbReference type="PRIDE" id="A9BV32"/>
    <dbReference type="EnsemblBacteria" id="ABX34494">
        <property type="protein sequence ID" value="ABX34494"/>
        <property type="gene ID" value="Daci_1854"/>
    </dbReference>
    <dbReference type="GeneID" id="60686284"/>
    <dbReference type="KEGG" id="dac:Daci_1854"/>
    <dbReference type="eggNOG" id="COG2080">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_052511_3_0_4"/>
    <dbReference type="OMA" id="EHMEPNL"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051537">
        <property type="term" value="F:2 iron, 2 sulfur cluster binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016491">
        <property type="term" value="F:oxidoreductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd00207">
        <property type="entry name" value="fer2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.10.20.30">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002888">
        <property type="entry name" value="2Fe-2S-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036884">
        <property type="entry name" value="2Fe-2S-bd_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036010">
        <property type="entry name" value="2Fe-2S_ferredoxin-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001041">
        <property type="entry name" value="2Fe-2S_ferredoxin-type"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006058">
        <property type="entry name" value="2Fe2S_fd_BS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012675">
        <property type="entry name" value="Beta-grasp_dom_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00111">
        <property type="entry name" value="Fer2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01799">
        <property type="entry name" value="Fer2_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47741">
        <property type="entry name" value="SSF47741"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54292">
        <property type="entry name" value="SSF54292"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00197">
        <property type="entry name" value="2FE2S_FER_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51085">
        <property type="entry name" value="2FE2S_FER_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="2Fe-2S ferredoxin-type" evidence="2">
        <location>
            <begin position="12"/>
            <end position="88"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023002"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS51085"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ABX34494.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="185" mass="19516" checksum="B58E8BC221D4CB32" modified="2008-01-15" version="1">MGTPVHPSSTPSPIRLQVNARACEVPAAPGTALLHVLRNDLELNGPKYGCGLGECGACTVLIDGVAARSCVIPVRAAVGREVTTLEGLGSRQCPGPTQQAFIDCQAAQCGYCLNGMIMTVEALLRRNPNPTEQELRNELHHNLCRCGTHVEIMQAALRAVQLRAQRAALQAPSGFPSSSAGEVQP</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="60" xmlns="http://uniprot.org/uniprot">
    <accession>A9BV64</accession>
    <name>A9BV64_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Cobalamin synthesis protein P47K</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Daci_2088</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="4" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the SIMIBI class G3E GTPase family. CobW subfamily.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX34728.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012204011.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_2088"/>
    <dbReference type="PRIDE" id="A9BV64"/>
    <dbReference type="EnsemblBacteria" id="ABX34728">
        <property type="protein sequence ID" value="ABX34728"/>
        <property type="gene ID" value="Daci_2088"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_2088"/>
    <dbReference type="eggNOG" id="COG0523">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_017452_0_2_4"/>
    <dbReference type="OMA" id="AICETES"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.1220.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011629">
        <property type="entry name" value="Cbl_biosynth_CobW-like_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036627">
        <property type="entry name" value="CobW-likC_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003495">
        <property type="entry name" value="CobW/HypB/UreG_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02492">
        <property type="entry name" value="cobW"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07683">
        <property type="entry name" value="CobW_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00833">
        <property type="entry name" value="CobW_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="CobW C-terminal" evidence="2">
        <location>
            <begin position="243"/>
            <end position="341"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00008073"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="SMART" id="SM00833"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ABX34728.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="364" mass="39849" checksum="E7079B647DE8C618" modified="2008-01-15" version="1">MSGLTDHHGERLPVGVLTGFLGSGKTTLLRQWLQDSPAGETAVLINEFGAVGLDHLLVGRIDADTVLLDNGCVCCAIRGELKDALWRLHQRRLRGELPPFQRVLMETTGLAAPGPVIATLIGDAQLRQIFRPAFISTVVDALHAPWQQSRRPEWLAQVAAADRLYLSKTDLATPQQAEAQRAQLAQINPLASIVTCGLGAAVPPAWQMQESHALQTDWLARAIAGTPRGRRGQRQGQGLHAGAQAFCLELDSPVDWCVLTLWLTMLLHRHGDRLLRLKGLVAVAADGWPQGQPTALHGMGHLMHAPEHLPEWPGEDRRSRLVFITAGLDEQHVRASWQSFQSFYRLHSQDNGSQTPASPSLHTA</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="64" xmlns="http://uniprot.org/uniprot">
    <accession>A9BVV2</accession>
    <name>A9BVV2_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Amidase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_2827</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX35465.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012204675.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_2827"/>
    <dbReference type="PRIDE" id="A9BVV2"/>
    <dbReference type="EnsemblBacteria" id="ABX35465">
        <property type="protein sequence ID" value="ABX35465"/>
        <property type="gene ID" value="Daci_2827"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_2827"/>
    <dbReference type="eggNOG" id="COG0154">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_009600_0_4_4"/>
    <dbReference type="OMA" id="GGHTYNP"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003824">
        <property type="term" value="F:catalytic activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.1300.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000120">
        <property type="entry name" value="Amidase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023631">
        <property type="entry name" value="Amidase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036928">
        <property type="entry name" value="AS_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11895">
        <property type="entry name" value="PTHR11895"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01425">
        <property type="entry name" value="Amidase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF75304">
        <property type="entry name" value="SSF75304"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Amidase" evidence="1">
        <location>
            <begin position="42"/>
            <end position="474"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF01425"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX35465.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="495" mass="52959" checksum="03E474D21F0CD63B" modified="2008-01-15" version="1">MESNASTAKQQPDLATGGGGVVEMSAVALSKAIQGRDLSCVEVLDAYCAQIDRLNPVVNALVSPMDRDWLRGRSRELDTLLARGQSLGPLHGFPQAPKDIMPAAGMVTTKGSPIFAGQVSQTDCVVFERMRAGGALFVARSNSPEFGLGGHTYNPVYGTTRNAFDPSRSAGGSSGGAGVAVALRMLPVADGSDMMGSLRTPAAFNHVYGLRTSVGCVPHGPSEEVFFQQFSVAGPMARDIPDLALLLSVQAGFDARLPLTRRSEPPKDWTAQLQRDCKGLRIGWLGDLGGHLPTEPGLLETCRAALQHFKTIGCTVEEAVPAFDFERLWRAWIDLRSFSVAGANAALYRDPVTHALLKPEALWEIERGLALPAMAVYDAARVRSAWYETLRRLFDSYDFLVLPCAQVFPFDAALDWPHAVGGREMDTYHRWMQAVVPATMAGLPALAAPAGLGPQGLPAGLQIIGPAQADLAVLQIGHAYDQAGGFSRVRSPLLD</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="45" xmlns="http://uniprot.org/uniprot">
    <accession>A9BW27</accession>
    <name>A9BW27_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="1">ERF family protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Daci_3205</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="2" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX35843.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_3205"/>
    <dbReference type="PRIDE" id="A9BW27"/>
    <dbReference type="EnsemblBacteria" id="ABX35843">
        <property type="protein sequence ID" value="ABX35843"/>
        <property type="gene ID" value="Daci_3205"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_3205"/>
    <dbReference type="eggNOG" id="ENOG5032GT6">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_085680_2_0_4"/>
    <dbReference type="OMA" id="IEETHHL"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007499">
        <property type="entry name" value="ERF_bacteria_virus"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04404">
        <property type="entry name" value="ERF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ABX35843.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="249" mass="26435" checksum="3B49CC84BF1E186C" modified="2008-01-15" version="1">MNTATEEMTLIDVPVQQQAVPAVQQGGALAPNSPAAMMMAAMSQGASLEQVEKMMDLQDRWEKKEAEKAYNAAFAAFKSEAVRIVQGRTVTDGPLKGRAYAELHDVVKAVTPALSRHGLSASWRLSKDEPQWIEITCVLKHIGGHSESVSMGGAPDTGGAKNQLQARASTKSYLERYTLKAICGVAEGGDDDDGDGGGTSDLVSGWVDYALARKGTPEFDAACKKARAEFDKSRDVASLKAFNAAVAKG</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="51" xmlns="http://uniprot.org/uniprot">
    <accession>A9BW63</accession>
    <name>A9BW63_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Daci_3241</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="2" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX35879.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012205079.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_3241"/>
    <dbReference type="PRIDE" id="A9BW63"/>
    <dbReference type="EnsemblBacteria" id="ABX35879">
        <property type="protein sequence ID" value="ABX35879"/>
        <property type="gene ID" value="Daci_3241"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_3241"/>
    <dbReference type="eggNOG" id="COG5492">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_063688_0_0_4"/>
    <dbReference type="OMA" id="GLKGYTW"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045404">
        <property type="entry name" value="Gp13-like"/>
    </dbReference>
    <dbReference type="Pfam" id="PF20036">
        <property type="entry name" value="Gp13-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ABX35879.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="322" mass="33715" checksum="0E4C9DA20B4B7FBF" modified="2008-01-15" version="1">MALSDMKVFNEYLKLATIETLAQDVAKFNAASAGSIQLTTQSIDGDFLQESFWAGIHSAQRRVDRYASNSAQSSTPLAQKQYDTVKIAGGFGPILWEPGQLSWIQKSPEEALEVISRNLSEAIMADQLNTAIAALVAAIANQAGATNDVSATAGITYSAINSAHAKFGDASARIVAQVMTGAMYHKLIGQNLANAEKLFTFSGVTIVDILGKAVIVTDAPSLFTAGTPDKVKVLSLVNGAAVVSDGSDLITNIQTTNGKNRIETTMQADYTFGLGLKGYTWDTANGGKSPTDAELATGTNWDLVANSVKASAGVVTIGDAAK</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="31" xmlns="http://uniprot.org/uniprot">
    <accession>A9BW72</accession>
    <name>A9BW72_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Daci_3250</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="2" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX35888.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_3250"/>
    <dbReference type="PRIDE" id="A9BW72"/>
    <dbReference type="EnsemblBacteria" id="ABX35888">
        <property type="protein sequence ID" value="ABX35888"/>
        <property type="gene ID" value="Daci_3250"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_3250"/>
    <dbReference type="HOGENOM" id="CLU_1934593_0_0_4"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ABX35888.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="130" mass="13683" checksum="C4DC6851159B83D2" modified="2008-01-15" version="1">MDPHENAPTANARAAAESAKHAATAAGLAEIDAKKAAACDLVAKIHEGEAIVPKAFNPWDGGQASGERLESRVSQAMEEIRGWSAAAFRSAALQPESDEAGRRFIEHGAMCYANCFLRIQRALGAALTPP</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2021-06-02" version="42" xmlns="http://uniprot.org/uniprot">
    <accession>A9BW81</accession>
    <name>A9BW81_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Daci_3259</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="2" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX35897.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012205097.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_3259"/>
    <dbReference type="EnsemblBacteria" id="ABX35897">
        <property type="protein sequence ID" value="ABX35897"/>
        <property type="gene ID" value="Daci_3259"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_3259"/>
    <dbReference type="eggNOG" id="ENOG5033D05">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_2011527_0_0_4"/>
    <dbReference type="OMA" id="VAHISCT"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ABX35897.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="124" mass="13246" checksum="55E25949D656AF6B" modified="2008-01-15" version="1">MQRIEILNADGTVANTIIATPEVAQQLHPGAWRVAAEQYEPTPSVAHISCTRRQGRLALLMLGLLEAAEAAIAAMPDGADKRAAQIEYEADTWERHNPFLSALWAQLGGTPGSLDAAFALAVTL</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-01-19" version="72" xmlns="http://uniprot.org/uniprot">
    <accession>A9BWA0</accession>
    <name>A9BWA0_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="5">OmpA/MotB domain protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ordered locus">Daci_3484</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="6" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX36120.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012205320.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_3484"/>
    <dbReference type="EnsemblBacteria" id="ABX36120">
        <property type="protein sequence ID" value="ABX36120"/>
        <property type="gene ID" value="Daci_3484"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_3484"/>
    <dbReference type="eggNOG" id="COG2885">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_016890_12_3_4"/>
    <dbReference type="OMA" id="TDEGWAF"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd07185">
        <property type="entry name" value="OmpA_C-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.1330.60">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006664">
        <property type="entry name" value="OMP_bac"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006665">
        <property type="entry name" value="OmpA-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036737">
        <property type="entry name" value="OmpA-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006311">
        <property type="entry name" value="TAT_signal"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00691">
        <property type="entry name" value="OmpA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR01021">
        <property type="entry name" value="OMPADOMAIN"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF103088">
        <property type="entry name" value="SSF103088"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51123">
        <property type="entry name" value="OMPA_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51318">
        <property type="entry name" value="TAT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1 2" id="KW-0472">Membrane</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="3">
        <location>
            <begin position="1"/>
            <end position="22"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5002732604" evidence="3">
        <location>
            <begin position="23"/>
            <end position="168"/>
        </location>
    </feature>
    <feature type="domain" description="OmpA-like" evidence="4">
        <location>
            <begin position="57"/>
            <end position="168"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00473"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="PROSITE" id="PS51123"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="ABX36120.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="168" mass="18015" checksum="8F34915C64376617" modified="2008-01-15" version="1">MLKRRSWIRMCGAGAAAVLALALVGCQTVPQVPAKAPGLTEEQQQLLRSQGFAQADQGWELQMSGKLLFGFDSAEVGAQARTKVLELGRALKGVGIERLRVEGHTDDRGSDAYNMRLSLRRAEAVADVLAEAGLARQDIEVKGLGRAMPVVPSDAAENRRVAIVVPLQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="90" xmlns="http://uniprot.org/uniprot">
    <accession>A9BWA2</accession>
    <name>A9BWA2_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="5">L-seryl-tRNA(Sec) selenium transferase</fullName>
            <ecNumber evidence="5">2.9.1.1</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="5">Selenocysteine synthase</fullName>
            <shortName evidence="5">Sec synthase</shortName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="5">Selenocysteinyl-tRNA(Sec) synthase</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="5" type="primary">selA</name>
        <name evidence="7" type="ordered locus">Daci_3486</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="8" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="5">Converts seryl-tRNA(Sec) to selenocysteinyl-tRNA(Sec) required for selenoprotein biosynthesis.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="5">
            <text>H(+) + L-seryl-tRNA(Sec) + selenophosphate = L-selenocysteinyl-tRNA(Sec) + phosphate</text>
            <dbReference type="Rhea" id="RHEA:22728"/>
            <dbReference type="Rhea" id="RHEA-COMP:9742"/>
            <dbReference type="Rhea" id="RHEA-COMP:9743"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:16144"/>
            <dbReference type="ChEBI" id="CHEBI:43474"/>
            <dbReference type="ChEBI" id="CHEBI:78533"/>
            <dbReference type="ChEBI" id="CHEBI:78573"/>
            <dbReference type="EC" id="2.9.1.1"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="1 5 6">
            <name>pyridoxal 5'-phosphate</name>
            <dbReference type="ChEBI" id="CHEBI:597326"/>
        </cofactor>
    </comment>
    <comment type="pathway">
        <text evidence="5">Aminoacyl-tRNA biosynthesis; selenocysteinyl-tRNA(Sec) biosynthesis; selenocysteinyl-tRNA(Sec) from L-seryl-tRNA(Sec) (bacterial route): step 1/1.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="5">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="5">Belongs to the SelA family.</text>
    </comment>
    <dbReference type="EC" id="2.9.1.1" evidence="5"/>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX36122.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012205322.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_3486"/>
    <dbReference type="PRIDE" id="A9BWA2"/>
    <dbReference type="EnsemblBacteria" id="ABX36122">
        <property type="protein sequence ID" value="ABX36122"/>
        <property type="gene ID" value="Daci_3486"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_3486"/>
    <dbReference type="eggNOG" id="COG1921">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_038142_1_0_4"/>
    <dbReference type="OMA" id="GATNRTH"/>
    <dbReference type="UniPathway" id="UPA00906">
        <property type="reaction ID" value="UER00896"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004125">
        <property type="term" value="F:L-seryl-tRNASec selenium transferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0001514">
        <property type="term" value="P:selenocysteine incorporation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0097056">
        <property type="term" value="P:selenocysteinyl-tRNA(Sec) biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniPathway"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.640.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00423">
        <property type="entry name" value="SelA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015424">
        <property type="entry name" value="PyrdxlP-dep_Trfase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015421">
        <property type="entry name" value="PyrdxlP-dep_Trfase_major"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018319">
        <property type="entry name" value="SelA-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004534">
        <property type="entry name" value="SelA_trans"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03841">
        <property type="entry name" value="SelA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53383">
        <property type="entry name" value="SSF53383"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00474">
        <property type="entry name" value="selA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2 5" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="3 5" id="KW-0648">Protein biosynthesis</keyword>
    <keyword evidence="5 6" id="KW-0663">Pyridoxal phosphate</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4 5" id="KW-0711">Selenium</keyword>
    <keyword evidence="5 7" id="KW-0808">Transferase</keyword>
    <feature type="modified residue" description="N6-(pyridoxal phosphate)lysine" evidence="5 6">
        <location>
            <position position="308"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001933"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022490"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022917"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023266"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00423"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="PIRSR" id="PIRSR618319-50"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="ABX36122.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="484" mass="51814" checksum="9090A9EFA81BA199" modified="2008-01-15" version="1">MTDTAAPSAASPAPSALRLPAVDKVLLSADMLALRERHGLDACTQAVRESLAQMRADAQERLRSGEPDAGAPGITEVVQAAGLRLAQRFAPRLRTVFNLTGTVLHTNLGRALLPQEAVDAVVAAMTAPANLEYDLEDGGRGDRDDLIESLVCELTGAEACTVVNNNAAAVLLTLATLAAGREVIVSRGELVEIGGAFRIPDMMTRAGATLVEVGTTNRTHARDYEGAVGEHTGLLMKVHCSNYAITGFTKAVSDAEVASIAHAHGLQMVVDLGSGTLVDLREWGLPYEVTVRETIESGADIVTFSGDKLLGGPQAGLIVGRKDLIARIKKHPLKRALRVSKLTLAALEPTLRLYLHPEKLAERLTTLRLFTRPQADMQARAQALQPLVQQALGSRYVVETAEMNSQIGSGALPVENLPSWGLRLHPADGRQAGRQLTRLEAGLRSLPRPVIGRLHDDALWLDLRCLEAADEPAFTEQLPLLHIA</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="77" xmlns="http://uniprot.org/uniprot">
    <accession>A9BWC0</accession>
    <name>A9BWC0_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="14">Phospholipase D/Transphosphatidylase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="14" type="ordered locus">Daci_3504</name>
    </gene>
    <organism evidence="14 15">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="14 15" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="15">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="15" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="15">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX36140.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012205340.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_3504"/>
    <dbReference type="PRIDE" id="A9BWC0"/>
    <dbReference type="EnsemblBacteria" id="ABX36140">
        <property type="protein sequence ID" value="ABX36140"/>
        <property type="gene ID" value="Daci_3504"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_3504"/>
    <dbReference type="eggNOG" id="COG1502">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_038053_1_2_4"/>
    <dbReference type="OMA" id="YVHVEFY"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008808">
        <property type="term" value="F:cardiolipin synthase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0032049">
        <property type="term" value="P:cardiolipin biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR022924">
        <property type="entry name" value="Cardiolipin_synthase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027379">
        <property type="entry name" value="CLS_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025202">
        <property type="entry name" value="PLD-like_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001736">
        <property type="entry name" value="PLipase_D/transphosphatidylase"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13091">
        <property type="entry name" value="PLDc_2"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13396">
        <property type="entry name" value="PLDc_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00155">
        <property type="entry name" value="PLDc"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR04265">
        <property type="entry name" value="bac_cardiolipin"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50035">
        <property type="entry name" value="PLD"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="3" id="KW-0444">Lipid biosynthesis</keyword>
    <keyword evidence="8" id="KW-0443">Lipid metabolism</keyword>
    <keyword evidence="9 12" id="KW-0472">Membrane</keyword>
    <keyword evidence="10" id="KW-0594">Phospholipid biosynthesis</keyword>
    <keyword evidence="11" id="KW-1208">Phospholipid metabolism</keyword>
    <keyword evidence="15" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="6" id="KW-0677">Repeat</keyword>
    <keyword evidence="4" id="KW-0808">Transferase</keyword>
    <keyword evidence="5 12" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="7 12" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="12">
        <location>
            <begin position="12"/>
            <end position="34"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="12">
        <location>
            <begin position="40"/>
            <end position="63"/>
        </location>
    </feature>
    <feature type="domain" description="PLD phosphodiesterase" evidence="13">
        <location>
            <begin position="220"/>
            <end position="247"/>
        </location>
    </feature>
    <feature type="domain" description="PLD phosphodiesterase" evidence="13">
        <location>
            <begin position="399"/>
            <end position="426"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022516"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022737"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00023098"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00023209"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="ARBA" id="ARBA00023264"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="12">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="13">
        <source>
            <dbReference type="PROSITE" id="PS50035"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="14">
        <source>
            <dbReference type="EMBL" id="ABX36140.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="15">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="484" mass="54098" checksum="99B8E2A11F3C49FF" modified="2008-01-15" version="1">MEWLRQYLTHENALLLLSVTWSVYVVIVAVWILLQRSAPVATLSWLLSMAAIPVGGLAIYYFFGPQRLKRQRIKRLRARKTSRVRTGVQRLRERMPGSSERLHQVARLVAATSDFPVSTAADLRLLVGGAATFDAIIEAVNAARHHIHLEYYIFEPDQTGTALRDLLIQRARAGIQVRLLVDALGSKKLGRRFLQPLEDAGAEVALFHGTKIGRRLRPVINFRTHRKILVCDGKVGFTGGVNVTDEENARVMPDAYHDVHLRLEGAIVNWLQTVFLEDWAYALEKDPKNEPADIDLLLPDAPEGPLPVQIITSGPDNGLQAIYRAHLAAINAAEERVWLTTPYFVPTEAALAALTNASLRGVDVQLLVPRRSDSALVTAAARSYYDELIRCGVRVYEYKARMLHSKTLVVDDNIAIIGTANFDYRSFFLNYEVCAIAYGPALNGDLAKQFEADLEQAQRVHFKRDLGFALRLFDSGARLCSPLL</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="55" xmlns="http://uniprot.org/uniprot">
    <accession>A9BWM3</accession>
    <name>A9BWM3_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Efflux transporter, RND family, MFP subunit</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Daci_3919</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="4" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX36550.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012205744.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_3919"/>
    <dbReference type="PRIDE" id="A9BWM3"/>
    <dbReference type="EnsemblBacteria" id="ABX36550">
        <property type="protein sequence ID" value="ABX36550"/>
        <property type="gene ID" value="Daci_3919"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_3919"/>
    <dbReference type="eggNOG" id="COG0845">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_018816_13_0_4"/>
    <dbReference type="OMA" id="FATIEMS"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR032317">
        <property type="entry name" value="HlyD_D23"/>
    </dbReference>
    <dbReference type="Pfam" id="PF16576">
        <property type="entry name" value="HlyD_D23"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="1">
        <location>
            <begin position="1"/>
            <end position="25"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5002732616" evidence="1">
        <location>
            <begin position="26"/>
            <end position="373"/>
        </location>
    </feature>
    <feature type="domain" description="HlyD_D23" evidence="2">
        <location>
            <begin position="62"/>
            <end position="220"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF16576"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ABX36550.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="373" mass="37686" checksum="562D22A86682F8E8" modified="2008-01-15" version="1">MMFSPWLLAGALALPAVGMAAQAQAAPASPSNPPSASVALSAEQAQALGVRFEPIQAAQRIEVSAHARVVLRPDAQAVVAAPYAGAVPRVLVALGQTVRTGQPVAVFTSPQLYEARRALLEAESQSRLARQALTRDQALHEDGIIAASRWQATQARAAEAAAMAQARRAELAASGLQFVGNEVHLVAPRAGLVTEVLAVPGARVEASAPLLRVADPKALELDLLLGREVPLPGVGDRVQVAARGAQGKVAGMAPVGDGSAGMRVRVALERAGDLRLGESVTASLALAGADAGPSGGSGGGSGGARLRVPAAALAHWNNRTGVFVATGQGARFMPLSVEASDEATAVVRGTLPPKARIAVTGIAALKGLLGGGE</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="55" xmlns="http://uniprot.org/uniprot">
    <accession>A9BWS6</accession>
    <name>A9BWS6_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">EVE domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_3972</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX36603.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012205797.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_3972"/>
    <dbReference type="PRIDE" id="A9BWS6"/>
    <dbReference type="EnsemblBacteria" id="ABX36603">
        <property type="protein sequence ID" value="ABX36603"/>
        <property type="gene ID" value="Daci_3972"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_3972"/>
    <dbReference type="eggNOG" id="COG2947">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_041799_2_2_4"/>
    <dbReference type="OMA" id="LWDGIRN"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002740">
        <property type="entry name" value="EVE_domain"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015947">
        <property type="entry name" value="PUA-like_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01878">
        <property type="entry name" value="EVE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF88697">
        <property type="entry name" value="SSF88697"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="EVE" evidence="1">
        <location>
            <begin position="10"/>
            <end position="157"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF01878"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX36603.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="162" mass="18281" checksum="29A72158267DC0F6" modified="2008-01-15" version="1">MTAAPTSARQFWLMKNEPDEFSIDHALAAPQATIAWDGVRNYQARNFMRDAMQVGDGVLYWHSSCAEPGIYGIARIAGNLRVDASQFDPRSPYYDPKSSPDKPRWLTLDVQALRKTRTLQIAELREHPELAGMRVLQKGNRLSITPVTPKEWAFIEGLLQPA</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="49" xmlns="http://uniprot.org/uniprot">
    <accession>A9BWY4</accession>
    <name>A9BWY4_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Daci_4338</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="4" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX36969.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_4338"/>
    <dbReference type="PRIDE" id="A9BWY4"/>
    <dbReference type="EnsemblBacteria" id="ABX36969">
        <property type="protein sequence ID" value="ABX36969"/>
        <property type="gene ID" value="Daci_4338"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_4338"/>
    <dbReference type="eggNOG" id="COG1196">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_063844_1_0_4"/>
    <dbReference type="OMA" id="QREGAFH"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="2" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="2" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="42"/>
            <end position="63"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="83"/>
            <end position="107"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="128"/>
            <end position="150"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="170"/>
            <end position="192"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="315"/>
            <end position="336"/>
        </location>
    </feature>
    <feature type="coiled-coil region" evidence="1">
        <location>
            <begin position="278"/>
            <end position="312"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ABX36969.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="342" mass="34637" checksum="33318989F5891F20" modified="2008-01-15" version="1">MGHSTPRKSAMSIAYSESAPLAEAPVVNTVATVDTSRSGVSWAAIFAGAMAAASLSLLLFILGTGLGLSSVSVWSGEGLDAGALGLTAVAWIAFTQLASAGVGGYLAGRLRTRWQGVHTDEVYFRDTAHGFLSWALATLAMVALMGAAAGGAVSGAFKAAQTVATSASSVVGGAIGAAGGAAAGGAAAMAGASGADASPQGLAYWTGSLFRNSGAATTTSNATPADLASATREAGVIFAQSLRTGQLSPADEQYLAQLIARNSDMSVEDAQKKVRSTFDSVQMQIKQAEQKAEEAKQKAKQAAEEARKATAHSMLWLFVSLMLGAFVGSLCATWGGRQRDAF</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="43" xmlns="http://uniprot.org/uniprot">
    <accession>A9BX16</accession>
    <name>A9BX16_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Daci_4370</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="2" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX37001.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012206173.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_4370"/>
    <dbReference type="PRIDE" id="A9BX16"/>
    <dbReference type="EnsemblBacteria" id="ABX37001">
        <property type="protein sequence ID" value="ABX37001"/>
        <property type="gene ID" value="Daci_4370"/>
    </dbReference>
    <dbReference type="GeneID" id="60688642"/>
    <dbReference type="KEGG" id="dac:Daci_4370"/>
    <dbReference type="eggNOG" id="ENOG50346HC">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_2104991_0_0_4"/>
    <dbReference type="OMA" id="HYYGESA"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ABX37001.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="115" mass="12582" checksum="B64E1F9054CACED2" modified="2008-01-15" version="1">MSMDMRRVLLIPASARPVDPGLASLSMDAQVWENGYPLVVGKARHGLLQDFWRHYYGESAAMFVAADQLLELHNDIMAAIPACVGEMPVLRFLNDLGRMCLQAHGDGSGLQVIGD</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="60" xmlns="http://uniprot.org/uniprot">
    <accession>A9BX38</accession>
    <name>A9BX38_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Glycosyl transferase family 9</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_4392</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX37023.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012206195.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_4392"/>
    <dbReference type="CAZy" id="GT9">
        <property type="family name" value="Glycosyltransferase Family 9"/>
    </dbReference>
    <dbReference type="PRIDE" id="A9BX38"/>
    <dbReference type="EnsemblBacteria" id="ABX37023">
        <property type="protein sequence ID" value="ABX37023"/>
        <property type="gene ID" value="Daci_4392"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_4392"/>
    <dbReference type="eggNOG" id="COG0859">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_038371_0_1_4"/>
    <dbReference type="OMA" id="ACRPCMF"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016757">
        <property type="term" value="F:glycosyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd03789">
        <property type="entry name" value="GT9_LPS_heptosyltransferase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002201">
        <property type="entry name" value="Glyco_trans_9"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01075">
        <property type="entry name" value="Glyco_transf_9"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1 2" id="KW-0808">Transferase</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX37023.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="359" mass="38732" checksum="D2832AAE5E40E7EB" modified="2008-01-15" version="1">MNSMNHPLLRLADSTSALRPGKYTDHRRSAVLPQLRRIGVFRARRFGDLLCATPVLRALAAAWPKARITLVGLPEAEGLAQRLSSVDDFELFPGWPGLPGVPSAKADEYSFFQRRMRSRRFDLVVQLHDSGRNTNALVANFGARRNAGFADPDDWVPEADALRFVPWPGHGSEVLGLLALTDYMGLPRRGLKLDLPLNADDRARVRPLLPASRRYAIVHPGARLAVRRWSASGFAAVADRLAQAGLEVVLTGSEDERALVASVAAQMRHPALDLSGRTDIWMLGAALASASVAVCNNTTVSMMAAALGTRSVVASQAGEVDRGPPLDPQRHRVFTPGSDAHAAELLAQAALALADEELA</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2021-06-02" version="72" xmlns="http://uniprot.org/uniprot">
    <accession>A9BX46</accession>
    <name>A9BX46_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Transcriptional regulator, LysR family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Daci_4400</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="4" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the LysR transcriptional regulatory family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX37031.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012206203.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_4400"/>
    <dbReference type="EnsemblBacteria" id="ABX37031">
        <property type="protein sequence ID" value="ABX37031"/>
        <property type="gene ID" value="Daci_4400"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_4400"/>
    <dbReference type="eggNOG" id="COG0583">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_039613_1_0_4"/>
    <dbReference type="OMA" id="RTWRITC"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003700">
        <property type="term" value="F:DNA-binding transcription factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005119">
        <property type="entry name" value="LysR_subst-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000847">
        <property type="entry name" value="Tscrpt_reg_HTH_LysR"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036390">
        <property type="entry name" value="WH_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00126">
        <property type="entry name" value="HTH_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03466">
        <property type="entry name" value="LysR_substrate"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46785">
        <property type="entry name" value="SSF46785"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50931">
        <property type="entry name" value="HTH_LYSR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HTH lysR-type" evidence="2">
        <location>
            <begin position="6"/>
            <end position="63"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00009437"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS50931"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ABX37031.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="311" mass="33409" checksum="47F188C25F01C68B" modified="2008-01-15" version="1">MTRVLYDLDVLRTFCTGVELGSFARAADRLGRSTSAVSAQLKKLESQCGTPLLRKSGRGLVLTEAGETLRGYALRLLELNDRAVAAVRGSELRGLVRLGLQEDLGESVLPHVLGQFARAHPHVRIEASVARSDELRERMALGQFDLALLWDVGMNHACVHGEHIMRLPLQWIGPASLDAAEAGWARGLNGGAQGDEALPLAMLEAPCPLRDIVTAALDKKGLAWRHAFNSASLTAVWAATAAGLGLSVRTPFGLPAHVRPLDAQALGLPALPSMDLILGRAALDAPEPVDRLARILVDAVREHVRRQEIAI</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="86" xmlns="http://uniprot.org/uniprot">
    <accession>A9BXG6</accession>
    <name>A9BXG6_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="8">ABC transporter related</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="8" type="ordered locus">Daci_5613</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="9" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX38242.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012207411.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_5613"/>
    <dbReference type="PRIDE" id="A9BXG6"/>
    <dbReference type="EnsemblBacteria" id="ABX38242">
        <property type="protein sequence ID" value="ABX38242"/>
        <property type="gene ID" value="Daci_5613"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_5613"/>
    <dbReference type="eggNOG" id="COG1135">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_000604_1_3_4"/>
    <dbReference type="OMA" id="RWEEMIN"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0042626">
        <property type="term" value="F:ATPase-coupled transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015821">
        <property type="term" value="P:methionine transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd03258">
        <property type="entry name" value="ABC_MetN_methionine_transporter"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003593">
        <property type="entry name" value="AAA+_ATPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR026253">
        <property type="entry name" value="ABC_MetN"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003439">
        <property type="entry name" value="ABC_transporter-like_ATP-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017871">
        <property type="entry name" value="ABC_transporter-like_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041701">
        <property type="entry name" value="MetN_ABC"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43166:SF5">
        <property type="entry name" value="PTHR43166:SF5"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00005">
        <property type="entry name" value="ABC_tran"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00382">
        <property type="entry name" value="AAA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00211">
        <property type="entry name" value="ABC_TRANSPORTER_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50893">
        <property type="entry name" value="ABC_TRANSPORTER_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3 6" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="1" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="5" id="KW-0472">Membrane</keyword>
    <keyword evidence="2 6" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4" id="KW-1278">Translocase</keyword>
    <feature type="domain" description="ABC transporter" evidence="7">
        <location>
            <begin position="22"/>
            <end position="269"/>
        </location>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <begin position="66"/>
            <end position="73"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022967"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00434"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="PROSITE" id="PS50893"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="ABX38242.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="388" mass="41274" checksum="E7277DE32670F8C5" modified="2008-01-15" version="1">MKVEQAAAGEPHAIDALQRPHIVFEGVRKHYPGTGRGAGRSAGEPVHALQALSFEVARAEVFGIIGRSGAGKSTLLRTINALERPSSGRVLVDGTDVATLDEDALVALRRRIGMIFQHFNLLSSRTVYENVALPLQAAGWRPALVRARVDELLALVGLADKSGAYPAQLSGGQKQRVGIARALVHEPEILLCDEATSALDPETTQSILELLREINRKLRLTIVLITHDMAVIREVCDRVLVLDQGRLQEIGEVWKLFAAPRSEAARALLRPLRQALAADLELVAEADGPDAVAVLAIGWADGGSQQGLPLAQLQVLGPRARLLQGGLDCMRGRSQGRLLVGVPVQDLPSAPSPLSPLSPLSPAALSSLQQALGADSLQLLGHVPAPAR</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="48" xmlns="http://uniprot.org/uniprot">
    <accession>A9BXK3</accession>
    <name>A9BXK3_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Daci_5651</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="2" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX38279.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012207448.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_5651"/>
    <dbReference type="PRIDE" id="A9BXK3"/>
    <dbReference type="EnsemblBacteria" id="ABX38279">
        <property type="protein sequence ID" value="ABX38279"/>
        <property type="gene ID" value="Daci_5651"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_5651"/>
    <dbReference type="eggNOG" id="COG3564">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_134343_1_0_4"/>
    <dbReference type="OMA" id="GSAPMCF"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008497">
        <property type="entry name" value="DUF779"/>
    </dbReference>
    <dbReference type="Pfam" id="PF05610">
        <property type="entry name" value="DUF779"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF009151">
        <property type="entry name" value="DUF779"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ABX38279.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="124" mass="13211" checksum="BD698DB0E9D7860A" modified="2008-01-15" version="1">MVDKVIATDAALALIADLQAQHGPVFFHQSGGCCDNSAANCYLPGELTIGAQDVLLGQVGGAPFYIGKSQYEYWKHTQLILDVIEGQGGTFSLEGSTGKAFHTRSRLFTDEEYAEILASEGNGP</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="64" xmlns="http://uniprot.org/uniprot">
    <accession>A9BXK4</accession>
    <name>A9BXK4_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Daci_5652</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="4" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX38280.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012207449.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_5652"/>
    <dbReference type="PRIDE" id="A9BXK4"/>
    <dbReference type="EnsemblBacteria" id="ABX38280">
        <property type="protein sequence ID" value="ABX38280"/>
        <property type="gene ID" value="Daci_5652"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_5652"/>
    <dbReference type="eggNOG" id="COG1225">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_042529_14_2_4"/>
    <dbReference type="OMA" id="CTIEAHE"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016209">
        <property type="term" value="F:antioxidant activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016491">
        <property type="term" value="F:oxidoreductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000866">
        <property type="entry name" value="AhpC/TSA"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036249">
        <property type="entry name" value="Thioredoxin-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013766">
        <property type="entry name" value="Thioredoxin_domain"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00578">
        <property type="entry name" value="AhpC-TSA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52833">
        <property type="entry name" value="SSF52833"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51352">
        <property type="entry name" value="THIOREDOXIN_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="1">
        <location>
            <begin position="1"/>
            <end position="39"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5002733147" evidence="1">
        <location>
            <begin position="40"/>
            <end position="195"/>
        </location>
    </feature>
    <feature type="domain" description="Thioredoxin" evidence="2">
        <location>
            <begin position="41"/>
            <end position="194"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS51352"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ABX38280.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="195" mass="20811" checksum="3F522B027A90766D" modified="2008-01-15" version="1">MSDIRCGDSIHPRASLGRRCARAAAPLLAALLLSPLAQAALKVGDSAPRFTTPAAVAGKAFDFDMAATLRKGPVVLYFFPKAFTQGCTMEAHAFAEATPRFAAMGATVVGMSHDDIDTLKRFSTEACRDQFAVASDPQAQTIRAYDASAAADPQRADRISYVIGQDGKVRFVHIGSDPDEHVRQTEAAVKRLTGK</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="58" xmlns="http://uniprot.org/uniprot">
    <accession>A9BXK8</accession>
    <name>A9BXK8_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="3">RND efflux system, outer membrane lipoprotein, NodT family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Daci_5656</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="4" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="2">Cell membrane</location>
            <topology evidence="2">Lipid-anchor</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="1 2">Belongs to the outer membrane factor (OMF) (TC 1.B.17) family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX38284.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_5656"/>
    <dbReference type="PRIDE" id="A9BXK8"/>
    <dbReference type="EnsemblBacteria" id="ABX38284">
        <property type="protein sequence ID" value="ABX38284"/>
        <property type="gene ID" value="Daci_5656"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_5656"/>
    <dbReference type="eggNOG" id="COG1538">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_012817_13_0_4"/>
    <dbReference type="OMA" id="DFWGRFS"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015562">
        <property type="term" value="F:efflux transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003423">
        <property type="entry name" value="OMP_efflux"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010131">
        <property type="entry name" value="RND_efflux_OM_lipoprot_NodT"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02321">
        <property type="entry name" value="OEP"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01845">
        <property type="entry name" value="outer_NodT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2 3" id="KW-0449">Lipoprotein</keyword>
    <keyword evidence="2" id="KW-0472">Membrane</keyword>
    <keyword evidence="2" id="KW-0564">Palmitate</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0732">Signal</keyword>
    <keyword evidence="2" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="2" id="KW-1134">Transmembrane beta strand</keyword>
    <feature type="signal peptide" evidence="2">
        <location>
            <begin position="1"/>
            <end position="19"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5001436694" evidence="2">
        <location>
            <begin position="20"/>
            <end position="501"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00007613"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="RuleBase" id="RU362097"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ABX38284.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="501" mass="52377" checksum="72E3EB1EBDAF6552" modified="2008-01-15" version="1">MPRLAAPVFLMLASLCAGCAVGPDYQPPAPALPQAYMGSRVLGETKPPSPASSTDLAAWWAAFGDPQMARLVTAALQQNLDVAQAAGRVLQARAGLDAAAAALLPSAQISAQTARSYQSVETPLGRVLDSMPGFDRYGSAQEANLGASWELDLFGGLRRARQASLAEYQASEAGATAVRLAVAAQTADTYIQIRGLQARLAVARSQVQAQQQLRSIVELRFGKGLSPELQLRQVEGALARAQATVPPLENALEAALNAMDVMLATAPGTHRAELADPRPVPVLPTLSLAEAPGDLLRRRPDLIAAERRLAASNARIGVAIAEYYPKLSISGLIGSATSISAGNLFSAGASQASVVGGLRWRLFDFGRINAQIHQAQAQEAESLAAYRQSVLRATEEVENALVSLDKRQELMTVLARGADALTRARQAAGAAYDKGVVSLIEVLQADESLLGVLDAQALARTESARSTVAIFKALGGGWTPEPLPSRALAAASHGLPASVAP</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="77" xmlns="http://uniprot.org/uniprot">
    <accession>A9BXN0</accession>
    <name>A9BXN0_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Transcriptional regulator, TetR family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Daci_5678</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="4" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX38306.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012207475.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_5678"/>
    <dbReference type="PRIDE" id="A9BXN0"/>
    <dbReference type="EnsemblBacteria" id="ABX38306">
        <property type="protein sequence ID" value="ABX38306"/>
        <property type="gene ID" value="Daci_5678"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_5678"/>
    <dbReference type="eggNOG" id="COG1309">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_069356_28_2_4"/>
    <dbReference type="OMA" id="GFYKHFG"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009057">
        <property type="entry name" value="Homeobox-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001647">
        <property type="entry name" value="HTH_TetR"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036271">
        <property type="entry name" value="Tet_transcr_reg_TetR-rel_C_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00440">
        <property type="entry name" value="TetR_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00455">
        <property type="entry name" value="HTHTETR"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46689">
        <property type="entry name" value="SSF46689"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48498">
        <property type="entry name" value="SSF48498"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50977">
        <property type="entry name" value="HTH_TETR_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HTH tetR-type" evidence="2">
        <location>
            <begin position="9"/>
            <end position="69"/>
        </location>
    </feature>
    <feature type="DNA-binding region" description="H-T-H motif" evidence="1">
        <location>
            <begin position="32"/>
            <end position="51"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00335"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS50977"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ABX38306.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="200" mass="20910" checksum="F10469D96B0FE279" modified="2008-01-15" version="1">MKVTKAQAAQNRQDILEAAARLYREHGLDGVGVAEVTRGAGLTHGGLYRHFESKDALVREACARAFDWSIAPLDGLQGEQAGSLAARVQSYLSPQHRDSPGEGCPAAALAVDVARAGGDLSAVFAEGVERNIGRFARVIGTLGDDQAPDATQRAQAMAMLSSMVGALVLARATVAANPALSDEILKTVQAHLLAPESQAR</sequence>
</entry>
<entry dataset="Swiss-Prot" created="2009-07-28" modified="2022-08-03" version="82" xmlns="http://uniprot.org/uniprot">
    <accession>A9BXN5</accession>
    <name>COQ7_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">3-demethoxyubiquinol 3-hydroxylase</fullName>
            <shortName evidence="1">DMQ hydroxylase</shortName>
            <ecNumber evidence="1">1.14.99.60</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="1">2-nonaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="1" type="primary">coq7</name>
        <name type="ordered locus">Daci_5683</name>
    </gene>
    <organism>
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference key="1">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain>DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="1">Catalyzes the hydroxylation of 2-nonaprenyl-3-methyl-6-methoxy-1,4-benzoquinol during ubiquinone biosynthesis.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>a 6-methoxy-3-methyl-2-all-trans-polyprenyl-1,4-benzoquinol + AH2 + O2 = A + a 3-demethylubiquinol + H2O</text>
            <dbReference type="Rhea" id="RHEA:50908"/>
            <dbReference type="Rhea" id="RHEA-COMP:10859"/>
            <dbReference type="Rhea" id="RHEA-COMP:10914"/>
            <dbReference type="ChEBI" id="CHEBI:13193"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:15379"/>
            <dbReference type="ChEBI" id="CHEBI:17499"/>
            <dbReference type="ChEBI" id="CHEBI:84167"/>
            <dbReference type="ChEBI" id="CHEBI:84422"/>
            <dbReference type="EC" id="1.14.99.60"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>Fe cation</name>
            <dbReference type="ChEBI" id="CHEBI:24875"/>
        </cofactor>
        <text evidence="1">Binds 2 iron ions per subunit.</text>
    </comment>
    <comment type="pathway">
        <text evidence="1">Cofactor biosynthesis; ubiquinone biosynthesis.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Cell membrane</location>
            <topology evidence="1">Peripheral membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="1">Belongs to the COQ7 family.</text>
    </comment>
    <dbReference type="EC" id="1.14.99.60" evidence="1"/>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX38311.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012207480.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A9BXN5"/>
    <dbReference type="SMR" id="A9BXN5"/>
    <dbReference type="STRING" id="398578.Daci_5683"/>
    <dbReference type="PRIDE" id="A9BXN5"/>
    <dbReference type="EnsemblBacteria" id="ABX38311">
        <property type="protein sequence ID" value="ABX38311"/>
        <property type="gene ID" value="Daci_5683"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_5683"/>
    <dbReference type="eggNOG" id="COG2941">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_088601_0_0_4"/>
    <dbReference type="OMA" id="NPLWYGG"/>
    <dbReference type="UniPathway" id="UPA00232"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008682">
        <property type="term" value="F:3-demethoxyubiquinol 3-hydroxylase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006744">
        <property type="term" value="P:ubiquinone biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd01042">
        <property type="entry name" value="DMQH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.1260.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01658">
        <property type="entry name" value="COQ7"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012347">
        <property type="entry name" value="Ferritin-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009078">
        <property type="entry name" value="Ferritin-like_SF"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011566">
        <property type="entry name" value="Ubq_synth_Coq7"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11237">
        <property type="entry name" value="PTHR11237"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03232">
        <property type="entry name" value="COQ7"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47240">
        <property type="entry name" value="SSF47240"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword id="KW-1003">Cell membrane</keyword>
    <keyword id="KW-0408">Iron</keyword>
    <keyword id="KW-0472">Membrane</keyword>
    <keyword id="KW-0479">Metal-binding</keyword>
    <keyword id="KW-0503">Monooxygenase</keyword>
    <keyword id="KW-0560">Oxidoreductase</keyword>
    <keyword id="KW-1185">Reference proteome</keyword>
    <keyword id="KW-0831">Ubiquinone biosynthesis</keyword>
    <feature type="chain" id="PRO_1000187049" description="3-demethoxyubiquinol 3-hydroxylase">
        <location>
            <begin position="1"/>
            <end position="205"/>
        </location>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <position position="54"/>
        </location>
        <ligand>
            <name>Fe cation</name>
            <dbReference type="ChEBI" id="CHEBI:24875"/>
            <label>1</label>
        </ligand>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <position position="84"/>
        </location>
        <ligand>
            <name>Fe cation</name>
            <dbReference type="ChEBI" id="CHEBI:24875"/>
            <label>1</label>
        </ligand>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <position position="84"/>
        </location>
        <ligand>
            <name>Fe cation</name>
            <dbReference type="ChEBI" id="CHEBI:24875"/>
            <label>2</label>
        </ligand>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <position position="87"/>
        </location>
        <ligand>
            <name>Fe cation</name>
            <dbReference type="ChEBI" id="CHEBI:24875"/>
            <label>1</label>
        </ligand>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <position position="136"/>
        </location>
        <ligand>
            <name>Fe cation</name>
            <dbReference type="ChEBI" id="CHEBI:24875"/>
            <label>2</label>
        </ligand>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <position position="168"/>
        </location>
        <ligand>
            <name>Fe cation</name>
            <dbReference type="ChEBI" id="CHEBI:24875"/>
            <label>1</label>
        </ligand>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <position position="168"/>
        </location>
        <ligand>
            <name>Fe cation</name>
            <dbReference type="ChEBI" id="CHEBI:24875"/>
            <label>2</label>
        </ligand>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <position position="171"/>
        </location>
        <ligand>
            <name>Fe cation</name>
            <dbReference type="ChEBI" id="CHEBI:24875"/>
            <label>2</label>
        </ligand>
    </feature>
    <evidence type="ECO:0000255" key="1">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01658"/>
        </source>
    </evidence>
    <sequence length="205" mass="22072" checksum="5842F4BF0B3C3CFB" modified="2008-01-15" version="1">MDKILTAADAALRTLFAQPSAAERSPAAGIAEGELTEAQRRLSGALMRVNHVGEVCAQALYNAQAMVTRDMVLREHLLEAAREETDHLAWTRDRLNALGDRPSLLNPLWFAGAFAIGVVAAKISDAASLGFVVETEEQVSAHLESHLGLLPEEDRASLAVVARMKDDEERHAAAAREAGALQLPPPARALMRLAAKVMTTTAHRI</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="66" xmlns="http://uniprot.org/uniprot">
    <accession>A9BXS0</accession>
    <name>A9BXS0_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Peptidase S1 and S6 chymotrypsin/Hap</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Daci_5718</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="2" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX38346.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_5718"/>
    <dbReference type="MEROPS" id="S01.280"/>
    <dbReference type="PRIDE" id="A9BXS0"/>
    <dbReference type="EnsemblBacteria" id="ABX38346">
        <property type="protein sequence ID" value="ABX38346"/>
        <property type="gene ID" value="Daci_5718"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_5718"/>
    <dbReference type="eggNOG" id="COG0265">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_021087_1_0_4"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.10.10">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043708">
        <property type="entry name" value="DUF5648"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009003">
        <property type="entry name" value="Peptidase_S1_PA"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043504">
        <property type="entry name" value="Peptidase_S1_PA_chymotrypsin"/>
    </dbReference>
    <dbReference type="Pfam" id="PF18885">
        <property type="entry name" value="DUF5648"/>
        <property type="match status" value="3"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50494">
        <property type="entry name" value="SSF50494"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ABX38346.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="693" mass="75171" checksum="160DFBCE68D480BA" modified="2008-01-15" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-01-19" version="54" xmlns="http://uniprot.org/uniprot">
    <accession>A9BXV4</accession>
    <name>A9BXV4_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Addiction module killer protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Daci_1245</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
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            <taxon>Comamonadaceae</taxon>
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    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="2" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX33889.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012203175.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_1245"/>
    <dbReference type="EnsemblBacteria" id="ABX33889">
        <property type="protein sequence ID" value="ABX33889"/>
        <property type="gene ID" value="Daci_1245"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_1245"/>
    <dbReference type="eggNOG" id="COG3657">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_152445_1_1_4"/>
    <dbReference type="OMA" id="FRGIGEY"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014056">
        <property type="entry name" value="Addiction_killer_pred"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR41791">
        <property type="entry name" value="PTHR41791"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF028744">
        <property type="entry name" value="Addict_mod_HI1419"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR02683">
        <property type="entry name" value="upstrm_HI1419"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ABX33889.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="119" mass="13358" checksum="63A3CBACCEA0B1AB" modified="2008-01-15" version="1">MRIQLQEYIREDGSSAYQTWFNGLDGQAAAKVAVAMARMELGNTSNIEWFRGIGEYKIDWGPGYRIYLAKDGERLIILFGGSTKKGQQKAIDEAVALHSEYKARKKQRPSDNAKKGTKA</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="32" xmlns="http://uniprot.org/uniprot">
    <accession>A9BY38</accession>
    <name>A9BY38_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Daci_1329</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="2" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX33973.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012203259.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_1329"/>
    <dbReference type="PRIDE" id="A9BY38"/>
    <dbReference type="EnsemblBacteria" id="ABX33973">
        <property type="protein sequence ID" value="ABX33973"/>
        <property type="gene ID" value="Daci_1329"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_1329"/>
    <dbReference type="HOGENOM" id="CLU_1728388_0_0_4"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ABX33973.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="151" mass="16258" checksum="DD5B4245E9BCF418" modified="2008-01-15" version="1">MAVKISGLKPTISVPATLYLPVDEGRFGAHHFAVVFKRLGKARRDEINELIVVGKPATQPDGSQEVRRMTIPELLDEVVVGWEGMLGDEGTPVPYSRDERLAAEEAYPGLEQAMAVAWFDGLNVHQRDAATKNSVALSGITSASTAQTAIS</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="33" xmlns="http://uniprot.org/uniprot">
    <accession>A9BY43</accession>
    <name>A9BY43_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Daci_1334</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="2" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX33978.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_1334"/>
    <dbReference type="PRIDE" id="A9BY43"/>
    <dbReference type="EnsemblBacteria" id="ABX33978">
        <property type="protein sequence ID" value="ABX33978"/>
        <property type="gene ID" value="Daci_1334"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_1334"/>
    <dbReference type="HOGENOM" id="CLU_747472_0_0_4"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ABX33978.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="370" mass="40308" checksum="11CD0A3D571DC3A8" modified="2008-01-15" version="1">MDLMLSFNNIYGQPAALMRRRIWSGEERKISGVSAHIANAFKPVRSVSPANFSASMGLYNGRLYFLAKGGNVYTTPDLKTLTHRLLAGGENSIITSIAQLGGVVIVGTQYRSGMYTSYGGYVSVDDGLTFRNALATPRFVRAGDYFYALSSSMVRSKTGLDTAWSATSMPSGEVWSHVLHNGEIYFTLSIINNVFYNAAYSLDGVSFILSNKFANERSKFPSGAYIQSAAVIGKKFVMVGVQGGQIYTVMTENGIDFEQFSQSLESGVEGEEFRSWIIQVVAADGVMYMRAATSDTAGIIRTRVFSSIDGISWRALPAIATRSSLIDPSNGMFELAPGQGIYAIPWADADHAFISDTVNDRDFYYELGAA</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="55" xmlns="http://uniprot.org/uniprot">
    <accession>A9BY92</accession>
    <name>A9BY92_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Protein serine/threonine phosphatase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Daci_1587</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="4" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX34231.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012203516.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_1587"/>
    <dbReference type="PRIDE" id="A9BY92"/>
    <dbReference type="EnsemblBacteria" id="ABX34231">
        <property type="protein sequence ID" value="ABX34231"/>
        <property type="gene ID" value="Daci_1587"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_1587"/>
    <dbReference type="eggNOG" id="COG2208">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_694159_0_0_4"/>
    <dbReference type="OMA" id="LMASIDY"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004722">
        <property type="term" value="F:protein serine/threonine phosphatase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.60.40.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036457">
        <property type="entry name" value="PPM-type_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001932">
        <property type="entry name" value="PPM-type_phosphatase_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07228">
        <property type="entry name" value="SpoIIE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00331">
        <property type="entry name" value="PP2C_SIG"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="PPM-type phosphatase" evidence="2">
        <location>
            <begin position="198"/>
            <end position="454"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="27"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="SMART" id="SM00331"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ABX34231.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="459" mass="49098" checksum="2C61BA40809DF77D" modified="2008-01-15" version="1">MFALDPSSTQHPAADQLPDPAPVPALAPAPAAPRLVARAGQLSQPTAPIPPEASNEDVHRLFSEQPLLETLAVVADDRPLGLINRQRFMEQYARPFARDVFGRRSCLVFTDTAPMVVAAGLPIDQLVQQALASGSRVLKDGFITVEEGRYAGIGTGHALMAAMSDIEADKTRQLMASIDYASLIQRSHLVESDRVLASQLADHGLLWEPRDVVGGDAYFFRATPQGLLGCMFDCTGHGVPGAFMTLIALSFLEQAVAPAGIGTGTGAVIDPGALLGQMNRYIKRVLQQRSRDVQPAWGAPAAPADGLPAEKSSSDGLDAALFLQSPCGTQLRFASARLDLLVAPPGAQEAAQVQIHAGDKLGIGYATTPDDAAWSTQELEVAPGSLLMVATDGVIDQLGGPRQIAHGRKRLARFLHEQHDRPAAQACAEFRQAFAQWQGTQRRRDDVSLLVWRNQALQP</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2021-06-02" version="56" xmlns="http://uniprot.org/uniprot">
    <accession>A9BYG0</accession>
    <name>A9BYG0_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">GCN5-related N-acetyltransferase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_1863</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX34503.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012203788.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_1863"/>
    <dbReference type="EnsemblBacteria" id="ABX34503">
        <property type="protein sequence ID" value="ABX34503"/>
        <property type="gene ID" value="Daci_1863"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_1863"/>
    <dbReference type="eggNOG" id="COG3153">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_101288_2_2_4"/>
    <dbReference type="OMA" id="RSAMPFY"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008080">
        <property type="term" value="F:N-acetyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016181">
        <property type="entry name" value="Acyl_CoA_acyltransferase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000182">
        <property type="entry name" value="GNAT_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13673">
        <property type="entry name" value="Acetyltransf_10"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55729">
        <property type="entry name" value="SSF55729"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51186">
        <property type="entry name" value="GNAT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="N-acetyltransferase" evidence="1">
        <location>
            <begin position="3"/>
            <end position="169"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS51186"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX34503.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="178" mass="19411" checksum="3D1FC65FE4A4A66F" modified="2008-01-15" version="1">MGFELRELASGDGCNALSLGSEAFAPLKSFLRKEAKKLHQEHLARTFVLVPEGETKVLAYITTLCTHVAVEQFDEPAVLDGFRYKDYPAIKLARLAVDTSLQGQGVGSQLVDFVIALITDHVMPYTGCRFLVVDAKPESVRFYAAKGFLPIGTSTDGPTATTTMFIDLRRVLAAIGRT</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="33" xmlns="http://uniprot.org/uniprot">
    <accession>A9BYK7</accession>
    <name>A9BYK7_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_1910</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX34550.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012203835.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="PRIDE" id="A9BYK7"/>
    <dbReference type="EnsemblBacteria" id="ABX34550">
        <property type="protein sequence ID" value="ABX34550"/>
        <property type="gene ID" value="Daci_1910"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_1910"/>
    <dbReference type="HOGENOM" id="CLU_2583938_0_0_4"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="6"/>
            <end position="25"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX34550.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="80" mass="8874" checksum="0C01293B67EFFA33" modified="2008-01-15" version="1">MDLNYLIAMGLGVLGGGLAVFIVWMRSPDAMDAERYRWLKATTNHVTSGGERIDIRGRAGEWDAIIDKQRAQAQQKGQTP</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="34" xmlns="http://uniprot.org/uniprot">
    <accession>A9BYM5</accession>
    <name>A9BYM5_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_1928</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX34568.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_1928"/>
    <dbReference type="PRIDE" id="A9BYM5"/>
    <dbReference type="EnsemblBacteria" id="ABX34568">
        <property type="protein sequence ID" value="ABX34568"/>
        <property type="gene ID" value="Daci_1928"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_1928"/>
    <dbReference type="HOGENOM" id="CLU_1765029_0_0_4"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="54"/>
            <end position="102"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="54"/>
            <end position="74"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="78"/>
            <end position="100"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX34568.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="147" mass="16245" checksum="2703DEAD73F88222" modified="2008-01-15" version="1">MANIDTDGFMVLARVQLEPLVAGASGQFKTWNEFHAAQIKALSDLQQAMAKTEAQEAQQAIEAQARQRQQAAAESLLKSAREDSERQAEAQRRMAEAQERMARDNAINNGLMLLQAAQPKPQPIAPLRPQVNCTSRNVMGTVQTNCW</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="83" xmlns="http://uniprot.org/uniprot">
    <accession>A9BZS5</accession>
    <name>A9BZS5_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="5">GntR domain protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ordered locus">Daci_3345</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="6" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX35983.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012205183.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_3345"/>
    <dbReference type="PRIDE" id="A9BZS5"/>
    <dbReference type="EnsemblBacteria" id="ABX35983">
        <property type="protein sequence ID" value="ABX35983"/>
        <property type="gene ID" value="Daci_3345"/>
    </dbReference>
    <dbReference type="GeneID" id="60687599"/>
    <dbReference type="KEGG" id="dac:Daci_3345"/>
    <dbReference type="eggNOG" id="COG2186">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_017584_9_5_4"/>
    <dbReference type="OMA" id="EWPVGSR"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003700">
        <property type="term" value="F:DNA-binding transcription factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd07377">
        <property type="entry name" value="WHTH_GntR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.120.530">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011711">
        <property type="entry name" value="GntR_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008920">
        <property type="entry name" value="TF_FadR/GntR_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000524">
        <property type="entry name" value="Tscrpt_reg_HTH_GntR"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036390">
        <property type="entry name" value="WH_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07729">
        <property type="entry name" value="FCD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00392">
        <property type="entry name" value="GntR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00035">
        <property type="entry name" value="HTHGNTR"/>
    </dbReference>
    <dbReference type="SMART" id="SM00895">
        <property type="entry name" value="FCD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00345">
        <property type="entry name" value="HTH_GNTR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46785">
        <property type="entry name" value="SSF46785"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48008">
        <property type="entry name" value="SSF48008"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50949">
        <property type="entry name" value="HTH_GNTR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0804">Transcription</keyword>
    <keyword evidence="1" id="KW-0805">Transcription regulation</keyword>
    <feature type="domain" description="HTH gntR-type" evidence="4">
        <location>
            <begin position="1"/>
            <end position="69"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023015"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023163"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="PROSITE" id="PS50949"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="ABX35983.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="268" mass="30100" checksum="E4A73E102ABFA7A7" modified="2008-01-15" version="1">MRVADQVVEKLLALVQASGVQPGQRLPAERQLAAELGVSRTSVREAIQKLTSQGVLVARRGDGTYLQEPAPAAEPADWLKDAMRPLAGLMESDSHYRYDVLETRHALETSTAWLAAQRATERDKDHIQRCFEVMIQHQQSGHAELAARADAQFHLAIAEASHNLVLVQVMHSLFTVVLSTVERNRHDMFRLSAPQTLQELTVQHQSLMQAILDGDPQRARECIGEHLEHVRTTIQRLDEDRARRERSMRLPLDAAPALLPTSDLIRKT</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-01-19" version="27" xmlns="http://uniprot.org/uniprot">
    <accession>A9C004</accession>
    <name>A9C004_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Daci_3634</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="2" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX36266.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="ABX36266">
        <property type="protein sequence ID" value="ABX36266"/>
        <property type="gene ID" value="Daci_3634"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_3634"/>
    <dbReference type="HOGENOM" id="CLU_2616177_0_0_4"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ABX36266.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="78" mass="8691" checksum="7D698F1A7622B21D" modified="2008-01-15" version="1">MESDPSELDRELGGLEVSQHVAHVRGAHDDWIHFHKNLLYSNNLALSLSHHVAILLHPTADPGFTGVPAVDRSKRFTE</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="72" xmlns="http://uniprot.org/uniprot">
    <accession>A9C052</accession>
    <name>A9C052_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">DNA helicase</fullName>
            <ecNumber evidence="2">3.6.4.12</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="7" type="ordered locus">Daci_3682</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="8" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>ATP + H2O = ADP + H(+) + phosphate</text>
            <dbReference type="Rhea" id="RHEA:13065"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:43474"/>
            <dbReference type="ChEBI" id="CHEBI:456216"/>
            <dbReference type="EC" id="3.6.4.12"/>
        </reaction>
    </comment>
    <dbReference type="EC" id="3.6.4.12" evidence="2"/>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX36314.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_3682"/>
    <dbReference type="PRIDE" id="A9C052"/>
    <dbReference type="EnsemblBacteria" id="ABX36314">
        <property type="protein sequence ID" value="ABX36314"/>
        <property type="gene ID" value="Daci_3682"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_3682"/>
    <dbReference type="eggNOG" id="COG0210">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_028798_0_0_4"/>
    <dbReference type="OMA" id="IRWHLFP"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016887">
        <property type="term" value="F:ATP hydrolysis activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="RHEA"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003678">
        <property type="term" value="F:DNA helicase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014017">
        <property type="entry name" value="DNA_helicase_UvrD-like_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000212">
        <property type="entry name" value="DNA_helicase_UvrD/REP"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011528">
        <property type="entry name" value="NERD"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11070">
        <property type="entry name" value="PTHR11070"/>
        <property type="match status" value="3"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08378">
        <property type="entry name" value="NERD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13361">
        <property type="entry name" value="UvrD_C"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="3" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="NERD" evidence="5">
        <location>
            <begin position="18"/>
            <end position="118"/>
        </location>
    </feature>
    <feature type="domain" description="UvrD-like helicase C-terminal" evidence="6">
        <location>
            <begin position="415"/>
            <end position="521"/>
        </location>
    </feature>
    <feature type="domain" description="UvrD-like helicase C-terminal" evidence="6">
        <location>
            <begin position="532"/>
            <end position="587"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001665"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00012551"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="Pfam" id="PF08378"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="Pfam" id="PF13361"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="ABX36314.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="601" mass="67011" checksum="E7253308EE583FF1" modified="2008-01-15" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="85" xmlns="http://uniprot.org/uniprot">
    <accession>A9C060</accession>
    <name>A9C060_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="6">3-hydroxyisobutyrate dehydrogenase</fullName>
            <shortName evidence="6">HIBADH</shortName>
            <ecNumber evidence="6">1.1.1.31</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="9" type="ordered locus">Daci_3690</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="9 10" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="10" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="6">
            <text>3-hydroxy-2-methylpropanoate + NAD(+) = 2-methyl-3-oxopropanoate + H(+) + NADH</text>
            <dbReference type="Rhea" id="RHEA:17681"/>
            <dbReference type="ChEBI" id="CHEBI:11805"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:57540"/>
            <dbReference type="ChEBI" id="CHEBI:57700"/>
            <dbReference type="ChEBI" id="CHEBI:57945"/>
            <dbReference type="EC" id="1.1.1.31"/>
        </reaction>
    </comment>
    <comment type="pathway">
        <text evidence="6">Amino-acid degradation; L-valine degradation.</text>
    </comment>
    <comment type="similarity">
        <text evidence="1 6">Belongs to the HIBADH-related family.</text>
    </comment>
    <dbReference type="EC" id="1.1.1.31" evidence="6"/>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX36322.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012205518.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_3690"/>
    <dbReference type="PRIDE" id="A9C060"/>
    <dbReference type="EnsemblBacteria" id="ABX36322">
        <property type="protein sequence ID" value="ABX36322"/>
        <property type="gene ID" value="Daci_3690"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_3690"/>
    <dbReference type="eggNOG" id="COG2084">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_035117_6_0_4"/>
    <dbReference type="OMA" id="WSSEVNN"/>
    <dbReference type="UniPathway" id="UPA00362"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008442">
        <property type="term" value="F:3-hydroxyisobutyrate dehydrogenase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051287">
        <property type="term" value="F:NAD binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0050661">
        <property type="term" value="F:NADP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006574">
        <property type="term" value="P:valine catabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniPathway"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.1040.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002204">
        <property type="entry name" value="3-OH-isobutyrate_DH-rel_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008927">
        <property type="entry name" value="6-PGluconate_DH-like_C_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013328">
        <property type="entry name" value="6PGD_dom2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006115">
        <property type="entry name" value="6PGDH_NADP-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011548">
        <property type="entry name" value="HIBADH"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015815">
        <property type="entry name" value="HIBADH-related"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036291">
        <property type="entry name" value="NAD(P)-bd_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029154">
        <property type="entry name" value="NADP-bd"/>
    </dbReference>
    <dbReference type="Pfam" id="PF14833">
        <property type="entry name" value="NAD_binding_11"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03446">
        <property type="entry name" value="NAD_binding_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF000103">
        <property type="entry name" value="HIBADH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48179">
        <property type="entry name" value="SSF48179"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51735">
        <property type="entry name" value="SSF51735"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01692">
        <property type="entry name" value="HIBADH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00895">
        <property type="entry name" value="3_HYDROXYISOBUT_DH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2 6" id="KW-0101">Branched-chain amino acid catabolism</keyword>
    <keyword evidence="4 6" id="KW-0520">NAD</keyword>
    <keyword evidence="3 6 9" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="NAD_binding_2" evidence="7">
        <location>
            <begin position="2"/>
            <end position="164"/>
        </location>
    </feature>
    <feature type="domain" description="NAD_binding_11" evidence="8">
        <location>
            <begin position="167"/>
            <end position="293"/>
        </location>
    </feature>
    <feature type="active site" evidence="5">
        <location>
            <position position="173"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00009080"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022456"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023002"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023027"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="PIRSR" id="PIRSR000103-1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="RuleBase" id="RU910714"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="Pfam" id="PF03446"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="Pfam" id="PF14833"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="ABX36322.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="297" mass="29967" checksum="4E379FCA8C29E2AB" modified="2008-01-15" version="1">MQIAFIGLGNMGGPMAINLHKAGHTVKAFDLSKDACAKVAAEGLAIAATAEDAVQGAEAVVSMLPASQHVEGLFLGRDGAAGLLQRIAKGALIIDSSTIAAATSQKVAKAAQAAGIAFIDAPVSGGTGGAIAGTLTFMVGGSDADLERARPLLEKMGANIFHAGAVGAGQTAKICNNMLLGILMIGTSEAIALGVANGLDPKVLSEIMRRSSGGNWALEKYNPFPGVHENAPASKNYAGGFGTDLMLKDLGLAQENAMAVKASTPLGGMARALYAMHSSSGQGGADFSSVIQCFLKR</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2020-10-07" version="49" xmlns="http://uniprot.org/uniprot">
    <accession>A9C0E5</accession>
    <name>A9C0E5_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">Phage-tail_3 domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Daci_4080</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
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            <strain evidence="4">DSM 14801 / SPH-1</strain>
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        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
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            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX36711.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_4080"/>
    <dbReference type="EnsemblBacteria" id="ABX36711">
        <property type="protein sequence ID" value="ABX36711"/>
        <property type="gene ID" value="Daci_4080"/>
    </dbReference>
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        <property type="taxonomic scope" value="Bacteria"/>
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        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR032876">
        <property type="entry name" value="J_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015943">
        <property type="entry name" value="WD40/YVTN_repeat-like_dom_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13550">
        <property type="entry name" value="Phage-tail_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Phage-tail_3" evidence="2">
        <location>
            <begin position="318"/>
            <end position="476"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="811"/>
            <end position="838"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF13550"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ABX36711.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="1124" mass="120553" checksum="A6918365B0414567" modified="2008-01-15" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="72" xmlns="http://uniprot.org/uniprot">
    <accession>A9C0L3</accession>
    <name>A9C0L3_DELAS</name>
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        <submittedName>
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    <organism evidence="1 2">
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                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
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            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX37086.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
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        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_4456"/>
    <dbReference type="EnsemblBacteria" id="ABX37086">
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        <property type="gene ID" value="Daci_4456"/>
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        <property type="component" value="Chromosome"/>
    </dbReference>
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        <property type="entry name" value="NAD(P)-bd_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002347">
        <property type="entry name" value="SDR_fam"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00081">
        <property type="entry name" value="GDHRDH"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00080">
        <property type="entry name" value="SDRFAMILY"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51735">
        <property type="entry name" value="SSF51735"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ABX37086.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="258" mass="26368" checksum="748CADCDF5A83E82" modified="2008-01-15" version="1">MQPSPQQLHGKVALITGASSGIGREAARLFARHGARLVLTARRQPELQALVAEIEQDGGQAIALAGDVRDEPLAQALVETATERFGGLDIAFNNAGMTGDPCALPDLSLQAWQDAIATNLTSAFLGAKHQIPALLARGGGSLIFTSTFVGHTAGLPGMGAYAASKAGLVGLTQVIAAEYGPRGLRANALLPGGTDTPMGRASTPTPEARAFVENLHALKRLATPAEIAAAALFLASDASSFITGTAMVVDGGVSINRI</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="43" xmlns="http://uniprot.org/uniprot">
    <accession>A9C0L4</accession>
    <name>A9C0L4_DELAS</name>
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        <submittedName>
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        <name evidence="2" type="ordered locus">Daci_4457</name>
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    <organism evidence="2 3">
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        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
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            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX37087.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_4457"/>
    <dbReference type="PRIDE" id="A9C0L4"/>
    <dbReference type="EnsemblBacteria" id="ABX37087">
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        <property type="gene ID" value="Daci_4457"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_4457"/>
    <dbReference type="eggNOG" id="COG3501">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_1560446_0_0_4"/>
    <dbReference type="OMA" id="SANINIM"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="151"/>
            <end position="171"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX37087.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="171" mass="19164" checksum="83FDA71ED5108993" modified="2008-01-15" version="1">MEIQIQGGAMRYIDGIVARLGMQGQNHRGYACKARLSPWLWLATRRSDVRIFQNQTVPDIIEQVLGAYGHPLRKKRTRGNRSGDCCAQFNESDCGLVPRWMLHEGIYFFFEHASHGALPGDESIPFHPPGKAGAGDPQNIHARQLEQEIKPGRHCSDGPEVARAGMARTYR</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="53" xmlns="http://uniprot.org/uniprot">
    <accession>A9C0W8</accession>
    <name>A9C0W8_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Tail Collar domain protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_5803</name>
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    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
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        <lineage>
            <taxon>Bacteria</taxon>
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            <taxon>Betaproteobacteria</taxon>
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    <reference evidence="2 3" key="1">
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            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
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                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
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            <dbReference type="PubMed" id="15240283"/>
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        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
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            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX38431.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
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        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_5803"/>
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    <dbReference type="EnsemblBacteria" id="ABX38431">
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        <property type="gene ID" value="Daci_5803"/>
    </dbReference>
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    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.1340.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011083">
        <property type="entry name" value="Phage_tail_collar_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037053">
        <property type="entry name" value="Phage_tail_collar_dom_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07484">
        <property type="entry name" value="Collar"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Collar" evidence="1">
        <location>
            <begin position="7"/>
            <end position="62"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF07484"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX38431.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="180" mass="18406" checksum="E59A9E9A3EE4F696" modified="2008-01-15" version="1">MADPFYGEVRAFGFSFAPVNWAFCAGQTILLQQNQALFAVIGNRFGGNGTTNFMLPNLQGRAAMGAGTGPGLSPRDIGETMGTATETLTIAQIPPHSHGISAQGAGATTAIPSGNLLAQGMQGVPPRGSARPTYAAGPATSAMAPTALLPVGGNQAHSNMQPVLALNFCICLYGEFPVRS</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="70" xmlns="http://uniprot.org/uniprot">
    <accession>A9C116</accession>
    <name>A9C116_DELAS</name>
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        <submittedName>
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    <gene>
        <name evidence="6" type="ordered locus">Daci_5851</name>
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    <organism evidence="6 7">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
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        <lineage>
            <taxon>Bacteria</taxon>
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            <taxon>Betaproteobacteria</taxon>
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    </organism>
    <reference evidence="6 7" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
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                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
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            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="7" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX38479.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_5851"/>
    <dbReference type="PRIDE" id="A9C116"/>
    <dbReference type="EnsemblBacteria" id="ABX38479">
        <property type="protein sequence ID" value="ABX38479"/>
        <property type="gene ID" value="Daci_5851"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_5851"/>
    <dbReference type="eggNOG" id="COG0155">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_015667_3_2_4"/>
    <dbReference type="OMA" id="AKGCAHP"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051539">
        <property type="term" value="F:4 iron, 4 sulfur cluster binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016491">
        <property type="term" value="F:oxidoreductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.413.10">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005117">
        <property type="entry name" value="NiRdtase/SiRdtase_haem-b_fer"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036136">
        <property type="entry name" value="Nit/Sulf_reduc_fer-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045854">
        <property type="entry name" value="NO2/SO3_Rdtase_4Fe4S_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03460">
        <property type="entry name" value="NIR_SIR_ferr"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55124">
        <property type="entry name" value="SSF55124"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56014">
        <property type="entry name" value="SSF56014"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0004">4Fe-4S</keyword>
    <keyword evidence="2" id="KW-0408">Iron</keyword>
    <keyword evidence="3" id="KW-0411">Iron-sulfur</keyword>
    <keyword evidence="1" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="NIR_SIR_ferr" evidence="5">
        <location>
            <begin position="37"/>
            <end position="103"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="4">
        <location>
            <begin position="409"/>
            <end position="434"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022485"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023004"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023014"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="Pfam" id="PF03460"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="ABX38479.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="434" mass="45904" checksum="42272E0248643967" modified="2008-01-15" version="1">MRVLHLGCRVRRRYSRGPYPMHTPPHIQGWCPGAWQPMASGDGLVLRVRPPLGRLTVAQARRLARLAWVHGNGALELSSRANVQLRGIAPGRHAAVLRALAAVGLLDADARRERRRNLVIDPLCRPQEAVHALGQALQQALDAADDLAGLPAKFGWSVEGAPGRLAGVSADIRLQRTAIGWLVQPDGRQQALAVADASQAVAAGLALARWFAGQATLRRAQGLRPGRMAAVAAQLQPLPGLDWVETETPAHGEGPAPGAVPGVGRLLGAPLGRLPAVALARLVRALPEQAFLRVTPWRMLLVEDAGAGAALPRWWAAAGLDDAADWITHAHDPRLRVSACTGAPGCIQALGPTQSLALELAPQVPHGAHLHVTGCAKGCARQAPATVVLRAEGEDEGEGPVYSVVRHGRAGDRAQEQRTLGSVRDNPGLLFSKE</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="55" xmlns="http://uniprot.org/uniprot">
    <accession>A9C159</accession>
    <name>A9C159_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Anti-FecI sigma factor, FecR</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ordered locus">Daci_5894</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="6" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX38522.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012207691.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_5894"/>
    <dbReference type="PRIDE" id="A9C159"/>
    <dbReference type="EnsemblBacteria" id="ABX38522">
        <property type="protein sequence ID" value="ABX38522"/>
        <property type="gene ID" value="Daci_5894"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_5894"/>
    <dbReference type="eggNOG" id="COG3712">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_050192_0_0_4"/>
    <dbReference type="OMA" id="SEHQRAW"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006860">
        <property type="entry name" value="FecR"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR032623">
        <property type="entry name" value="FecR_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012373">
        <property type="entry name" value="Ferrdict_sens_TM"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30273">
        <property type="entry name" value="PTHR30273"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF16220">
        <property type="entry name" value="DUF4880"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04773">
        <property type="entry name" value="FecR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF018266">
        <property type="entry name" value="FecR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0472">Membrane</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="2" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="102"/>
            <end position="123"/>
        </location>
    </feature>
    <feature type="domain" description="DUF4880" evidence="4">
        <location>
            <begin position="34"/>
            <end position="73"/>
        </location>
    </feature>
    <feature type="domain" description="FecR" evidence="3">
        <location>
            <begin position="135"/>
            <end position="238"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="29"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF04773"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="Pfam" id="PF16220"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="ABX38522.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="353" mass="37870" checksum="8C0B4D60B7D00EF1" modified="2008-01-15" version="1">MTALPSNSDSALDAAAHSPTHTTTPAQAQARIRQEAIAWYARLCSGDATDADRAAWQRWHEAHPEHQRAWRHFDALQSMLQRVPGHLAASTLQASRRSRRRVLRGIGALVGSGAVAGLSWQLAGGQGGVRSWLADYRTGTGERRTVTLADGSELTLNTRTSVDVSMDPVRRLLVLREGEILVQTAHSLSGPGAGAKDGRPFMVHTPQGRILALGTRFTVRSQGGAGGDTVVSVLQDAVEIQPLQDPSRSLRLQAGQQANFSRNGMLPAQAADPAQVSWVGGSLIVDGWRLDDVVRELARYRPGRLACDPAVAGLRVSGVFPLADTDKALAVITRAFPVRAAGLSRYWLTLVPV</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="50" xmlns="http://uniprot.org/uniprot">
    <accession>A9C1D3</accession>
    <name>A9C1D3_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ordered locus">Daci_5968</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="5" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Periplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the UPF0065 (bug) family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX38596.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012207765.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_5968"/>
    <dbReference type="PRIDE" id="A9C1D3"/>
    <dbReference type="EnsemblBacteria" id="ABX38596">
        <property type="protein sequence ID" value="ABX38596"/>
        <property type="gene ID" value="Daci_5968"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_5968"/>
    <dbReference type="eggNOG" id="COG3181">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_045683_0_0_4"/>
    <dbReference type="OMA" id="MAESIPQ"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0042597">
        <property type="term" value="C:periplasmic space"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.190.150">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005064">
        <property type="entry name" value="BUG"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR042100">
        <property type="entry name" value="Bug_dom1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR42928">
        <property type="entry name" value="PTHR42928"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03401">
        <property type="entry name" value="TctC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF017082">
        <property type="entry name" value="YflP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="3">
        <location>
            <begin position="1"/>
            <end position="40"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5002732764" evidence="3">
        <location>
            <begin position="41"/>
            <end position="344"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004418"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00006987"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="ABX38596.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="344" mass="35609" checksum="9B16964A3CF39752" modified="2008-01-15" version="1">MQQPTHGTRRDAIAKIKAATAFTAIPLAFMALGLAGQASAQTPSPAFPSKTIRFVVPYPPGGPTDLMARMLQPELQQRLGVTVIVENKSGAGGNLGSAEVARQAPADGHTLLLAASGPMAVNSSLYKSMPFNPLKDLEPVVQLSAFPLVLEVHPSLGVKTVAELLALAKTGKTLSFASAGNGTPQHLAGELFNSMEQVKLGHVPYRGAGPALNDLIGGQVGVMFDIVGSSLQHIQGGRLIPLAVTSAERTKVLPDVPTMAQAGVPGYQITGWHGIAVRAGTPPAAIDKLNATVNAIFKDPAFRTRWEAIGTPAVGGTAAEFGALIKSDSQRLGALVRSTGVTLD</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-01-19" version="67" xmlns="http://uniprot.org/uniprot">
    <accession>A9C1H1</accession>
    <name>A9C1H1_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="9">MotA/TolQ/ExbB proton channel</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="9" type="ordered locus">Daci_6006</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="9 10" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="10" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1 6">Membrane</location>
            <topology evidence="1 6">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="6">Belongs to the exbB/tolQ family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX38634.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012207803.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_6006"/>
    <dbReference type="EnsemblBacteria" id="ABX38634">
        <property type="protein sequence ID" value="ABX38634"/>
        <property type="gene ID" value="Daci_6006"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_6006"/>
    <dbReference type="eggNOG" id="COG0811">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_053325_2_0_4"/>
    <dbReference type="OMA" id="HDLEHSW"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015031">
        <property type="term" value="P:protein transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002898">
        <property type="entry name" value="MotA_ExbB_proton_chnl"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01618">
        <property type="entry name" value="MotA_ExbB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="5 7" id="KW-0472">Membrane</keyword>
    <keyword evidence="6" id="KW-0653">Protein transport</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 7" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="4 7" id="KW-1133">Transmembrane helix</keyword>
    <keyword evidence="6" id="KW-0813">Transport</keyword>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="20"/>
            <end position="40"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="129"/>
            <end position="154"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="174"/>
            <end position="195"/>
        </location>
    </feature>
    <feature type="domain" description="MotA_ExbB" evidence="8">
        <location>
            <begin position="102"/>
            <end position="206"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="RuleBase" id="RU004057"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="Pfam" id="PF01618"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="ABX38634.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="244" mass="25237" checksum="C7FA50F7C1BB72FB" modified="2008-01-15" version="1">MTGPLWLWWQQGDAVARGTALLLLALSVASWVVIVWKIWFMAASRRRVPQAIAAFWSAPDLATGQARMAEGDRQQLVAPMAGAVSQALAPTGSSGMALSGRAARSVRLTRGLRQALQSASHQLQWGQTLLATVGATAPFVGLLGTVWGIHHALATLAGSGQIGIEQLAGPVGEALVMTAAGLAVALPAVLAYNLLGRAAAQMEALLEGFAHDLQAMFGLEQPGQVQPDDGMPVAGLPAGPMDAP</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="77" xmlns="http://uniprot.org/uniprot">
    <accession>A9C1Y8</accession>
    <name>A9C1Y8_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="13">Gluconate 2-dehydrogenase (Acceptor)</fullName>
            <ecNumber evidence="13">1.1.99.3</ecNumber>
        </submittedName>
    </protein>
    <gene>
        <name evidence="13" type="ordered locus">Daci_2986</name>
    </gene>
    <organism evidence="13 14">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="13 14" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="14">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="14" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="14">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="8">
            <name>heme c</name>
            <dbReference type="ChEBI" id="CHEBI:61717"/>
        </cofactor>
        <text evidence="8">Binds 3 heme c groups covalently per subunit.</text>
    </comment>
    <comment type="PTM">
        <text evidence="9">Binds 3 heme groups per subunit.</text>
    </comment>
    <dbReference type="EC" id="1.1.99.3" evidence="13"/>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX35624.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012204830.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_2986"/>
    <dbReference type="PRIDE" id="A9C1Y8"/>
    <dbReference type="EnsemblBacteria" id="ABX35624">
        <property type="protein sequence ID" value="ABX35624"/>
        <property type="gene ID" value="Daci_2986"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_2986"/>
    <dbReference type="eggNOG" id="COG2010">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_028594_0_1_4"/>
    <dbReference type="OMA" id="RALYFRP"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009055">
        <property type="term" value="F:electron transfer activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0033717">
        <property type="term" value="F:gluconate 2-dehydrogenase (acceptor) activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0020037">
        <property type="term" value="F:heme binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005506">
        <property type="term" value="F:iron ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.760.10">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009056">
        <property type="entry name" value="Cyt_c-like_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036909">
        <property type="entry name" value="Cyt_c-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014353">
        <property type="entry name" value="Membr-bd_ADH_cyt_c"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00034">
        <property type="entry name" value="Cytochrom_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13442">
        <property type="entry name" value="Cytochrome_CBB3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF000018">
        <property type="entry name" value="Mb_ADH_cyt_c"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46626">
        <property type="entry name" value="SSF46626"/>
        <property type="match status" value="3"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51007">
        <property type="entry name" value="CYTC"/>
        <property type="match status" value="3"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="2 8 10" id="KW-0349">Heme</keyword>
    <keyword evidence="6 9 10" id="KW-0408">Iron</keyword>
    <keyword evidence="7 11" id="KW-0472">Membrane</keyword>
    <keyword evidence="3 9 10" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="13" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="14" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="5" id="KW-0677">Repeat</keyword>
    <keyword evidence="4" id="KW-0732">Signal</keyword>
    <keyword evidence="11" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="11" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="11">
        <location>
            <begin position="22"/>
            <end position="40"/>
        </location>
    </feature>
    <feature type="domain" description="Cytochrome c" evidence="12">
        <location>
            <begin position="65"/>
            <end position="168"/>
        </location>
    </feature>
    <feature type="domain" description="Cytochrome c" evidence="12">
        <location>
            <begin position="210"/>
            <end position="318"/>
        </location>
    </feature>
    <feature type="domain" description="Cytochrome c" evidence="12">
        <location>
            <begin position="336"/>
            <end position="426"/>
        </location>
    </feature>
    <feature type="binding site" description="covalent" evidence="8">
        <location>
            <position position="79"/>
        </location>
        <ligand>
            <name>heme</name>
            <dbReference type="ChEBI" id="CHEBI:30413"/>
            <label>1</label>
        </ligand>
    </feature>
    <feature type="binding site" description="covalent" evidence="8">
        <location>
            <position position="82"/>
        </location>
        <ligand>
            <name>heme</name>
            <dbReference type="ChEBI" id="CHEBI:30413"/>
            <label>1</label>
        </ligand>
    </feature>
    <feature type="binding site" description="axial binding residue" evidence="9">
        <location>
            <position position="83"/>
        </location>
        <ligand>
            <name>heme</name>
            <dbReference type="ChEBI" id="CHEBI:30413"/>
            <label>1</label>
        </ligand>
        <ligandPart>
            <name>Fe</name>
            <dbReference type="ChEBI" id="CHEBI:18248"/>
        </ligandPart>
    </feature>
    <feature type="binding site" description="covalent" evidence="8">
        <location>
            <position position="225"/>
        </location>
        <ligand>
            <name>heme</name>
            <dbReference type="ChEBI" id="CHEBI:30413"/>
            <label>2</label>
        </ligand>
    </feature>
    <feature type="binding site" description="covalent" evidence="8">
        <location>
            <position position="228"/>
        </location>
        <ligand>
            <name>heme</name>
            <dbReference type="ChEBI" id="CHEBI:30413"/>
            <label>2</label>
        </ligand>
    </feature>
    <feature type="binding site" description="axial binding residue" evidence="9">
        <location>
            <position position="229"/>
        </location>
        <ligand>
            <name>heme</name>
            <dbReference type="ChEBI" id="CHEBI:30413"/>
            <label>2</label>
        </ligand>
        <ligandPart>
            <name>Fe</name>
            <dbReference type="ChEBI" id="CHEBI:18248"/>
        </ligandPart>
    </feature>
    <feature type="binding site" description="covalent" evidence="8">
        <location>
            <position position="349"/>
        </location>
        <ligand>
            <name>heme</name>
            <dbReference type="ChEBI" id="CHEBI:30413"/>
            <label>3</label>
        </ligand>
    </feature>
    <feature type="binding site" description="covalent" evidence="8">
        <location>
            <position position="352"/>
        </location>
        <ligand>
            <name>heme</name>
            <dbReference type="ChEBI" id="CHEBI:30413"/>
            <label>3</label>
        </ligand>
    </feature>
    <feature type="binding site" description="axial binding residue" evidence="9">
        <location>
            <position position="353"/>
        </location>
        <ligand>
            <name>heme</name>
            <dbReference type="ChEBI" id="CHEBI:30413"/>
            <label>3</label>
        </ligand>
        <ligandPart>
            <name>Fe</name>
            <dbReference type="ChEBI" id="CHEBI:18248"/>
        </ligandPart>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022617"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022729"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022737"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023004"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="PIRSR" id="PIRSR000018-50"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="PIRSR" id="PIRSR000018-51"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00433"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="12">
        <source>
            <dbReference type="PROSITE" id="PS51007"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="13">
        <source>
            <dbReference type="EMBL" id="ABX35624.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="14">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="447" mass="47323" checksum="B312CF615CD2C403" modified="2008-01-15" version="1">MNTLAENAASGNTRGRRRLARVAGLALLIIALLGALLAWFNLRGEQGVHAYGHGGWSGARETPAALIERGAYLARVGNCAGCHTAAGGAEYAGGRGLPTSFGTLYTSNLTPDKESGLGLWTAQDFWRAMHNGRSREGRLLYPAFPYDSYTHVTRADSDALFAYLQSLPAVRAQVPRHALDFPYGWQGSLAVWRALFFTPQDWQDRPQKAAAWNRGAYLAQGLGHCAACHAPRNGMGASSQAMSGGFVAGQAWYAPSLLDPGEAGVREGQESAWVQLLQTGSGPSGSALGPMAEVVARSTQHWQPQDLQALASYLQEQGATAGPPRSRPAAAPVPSGQMALGRAIYERQCAVCHGAEGQGTPGAFPALAGNASVTLAEPRNLLLVLLEGGYPPSTRQQPQPHGMPPFGHVLSDAQVAAVASYVRNAWGNKAAEIGNMEVYRAREGRGF</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="68" xmlns="http://uniprot.org/uniprot">
    <accession>A9C281</accession>
    <name>A9C281_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="7">Endolytic murein transglycosylase</fullName>
            <ecNumber evidence="7">4.2.2.-</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="7">Peptidoglycan polymerization terminase</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="7" type="primary">mltG</name>
        <name evidence="8" type="ordered locus">Daci_3387</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="9" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="7">Functions as a peptidoglycan terminase that cleaves nascent peptidoglycan strands endolytically to terminate their elongation.</text>
    </comment>
    <comment type="similarity">
        <text evidence="7">Belongs to the transglycosylase MltG family.</text>
    </comment>
    <dbReference type="EC" id="4.2.2.-" evidence="7"/>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX36025.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_3387"/>
    <dbReference type="PRIDE" id="A9C281"/>
    <dbReference type="EnsemblBacteria" id="ABX36025">
        <property type="protein sequence ID" value="ABX36025"/>
        <property type="gene ID" value="Daci_3387"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_3387"/>
    <dbReference type="eggNOG" id="COG1559">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_025574_0_2_4"/>
    <dbReference type="OMA" id="IAMPGKA"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005887">
        <property type="term" value="C:integral component of plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016829">
        <property type="term" value="F:lyase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008932">
        <property type="term" value="F:lytic endotransglycosylase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0071555">
        <property type="term" value="P:cell wall organization"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009252">
        <property type="term" value="P:peptidoglycan biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd08010">
        <property type="entry name" value="MltG_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_02065">
        <property type="entry name" value="MltG"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003770">
        <property type="entry name" value="MLTG-like"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30518">
        <property type="entry name" value="PTHR30518"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02618">
        <property type="entry name" value="YceG"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00247">
        <property type="entry name" value="TIGR00247"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="7" id="KW-0997">Cell inner membrane</keyword>
    <keyword evidence="1 7" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="6 7" id="KW-0961">Cell wall biogenesis/degradation</keyword>
    <keyword evidence="5 7 8" id="KW-0456">Lyase</keyword>
    <keyword evidence="4 7" id="KW-0472">Membrane</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 7" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="3 7" id="KW-1133">Transmembrane helix</keyword>
    <feature type="site" description="Important for catalytic activity" evidence="7">
        <location>
            <position position="206"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023239"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023316"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_02065"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="ABX36025.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="329" mass="36280" checksum="DF8598A1EAE200F5" modified="2008-01-15" version="1">MMLLVLAAVLAGAGWWWLNQPLPLAQPTLELEVEPGTTPRGVAREVVKAGVQTDARLLYAWFRVSGQDRQIKAGNYELTTGLTPYVLLQKLARGEESLKALTLVEGWNWRQVRAALAREEFLRQESAGMDDATLMQALGRAGVAPEGRFFPDTYTYAKGSSDLAVLRRALHAMDRRLADVWALRSADTPLKTPDEALILASIVEKETGRAADRAQIAGVFSNRLRIGMLLQTDPTVIYGLGEKFDGNLRRRDLQTDTPWNTYTRAGLPPTPIAMPGKAALMAAVQPGQTKALYFVARGDGTSHFSASLDEHNRAVNRYQRGQQSPEQKP</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="63" xmlns="http://uniprot.org/uniprot">
    <accession>A9C283</accession>
    <name>A9C283_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="1">DNA-directed DNA polymerase</fullName>
            <ecNumber evidence="1">2.7.7.7</ecNumber>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Daci_3389</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="2" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EC" id="2.7.7.7" evidence="1"/>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX36027.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012205227.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_3389"/>
    <dbReference type="PRIDE" id="A9C283"/>
    <dbReference type="EnsemblBacteria" id="ABX36027">
        <property type="protein sequence ID" value="ABX36027"/>
        <property type="gene ID" value="Daci_3389"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_3389"/>
    <dbReference type="eggNOG" id="COG0470">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_006229_4_3_4"/>
    <dbReference type="OMA" id="QRGHAWL"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003887">
        <property type="term" value="F:DNA-directed DNA polymerase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0239">DNA-directed DNA polymerase</keyword>
    <keyword evidence="1" id="KW-0548">Nucleotidyltransferase</keyword>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0808">Transferase</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ABX36027.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="349" mass="37189" checksum="0104886FE160853F" modified="2008-01-15" version="1">MSEALPQPAETDTAWIAGQRARLLAQRGHAWLLQGPSGLGQYALSLSLVRAWLCESPSPQGACGHCGSCHAIDVRAHADLCVLMPEVQMMALGWPLPEKAQADIDDKKRKPSKEIRVEAMRDAVEFCQRTSARGRGKAVLVYPAEQMNAITANALLKTLEEPPGDARFVLASEAAHQLLPTIRSRCLTHTMAWPDQQEALAWLQGQGVAPEAADVALRAAGGRPGDALALAHSGGGKDMAAWSQLPRALAKGDVAALAAYAPPHAVEALQKICHDLMALAAGAAPRYFTPADLPSRPLDMGLLAEWSRALAQAARTADHPFNAGLMTEALAAEARRVLMSGQPARQRRG</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="82" xmlns="http://uniprot.org/uniprot">
    <accession>A9C288</accession>
    <name>A9C288_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="7">Tol-Pal system protein TolB</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="7" type="primary">tolB</name>
        <name evidence="9" type="ordered locus">Daci_3394</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="9 10" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="10" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="7">Part of the Tol-Pal system, which plays a role in outer membrane invagination during cell division and is important for maintaining outer membrane integrity.</text>
    </comment>
    <comment type="subunit">
        <text evidence="7">The Tol-Pal system is composed of five core proteins: the inner membrane proteins TolA, TolQ and TolR, the periplasmic protein TolB and the outer membrane protein Pal. They form a network linking the inner and outer membranes and the peptidoglycan layer.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1 7">Periplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2 7">Belongs to the TolB family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX36032.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_3394"/>
    <dbReference type="PRIDE" id="A9C288"/>
    <dbReference type="EnsemblBacteria" id="ABX36032">
        <property type="protein sequence ID" value="ABX36032"/>
        <property type="gene ID" value="Daci_3394"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_3394"/>
    <dbReference type="eggNOG" id="COG0823">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_047123_0_0_4"/>
    <dbReference type="OMA" id="VREPSWG"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0042597">
        <property type="term" value="C:periplasmic space"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0007049">
        <property type="term" value="P:cell cycle"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051301">
        <property type="term" value="P:cell division"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0017038">
        <property type="term" value="P:protein import"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.120.10.30">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00671">
        <property type="entry name" value="TolB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011042">
        <property type="entry name" value="6-blade_b-propeller_TolB-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011659">
        <property type="entry name" value="PD40"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014167">
        <property type="entry name" value="Tol-Pal_TolB"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007195">
        <property type="entry name" value="TolB_N"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07676">
        <property type="entry name" value="PD40"/>
        <property type="match status" value="4"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04052">
        <property type="entry name" value="TolB_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR02800">
        <property type="entry name" value="propeller_TolB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="6 7" id="KW-0131">Cell cycle</keyword>
    <keyword evidence="3 7" id="KW-0132">Cell division</keyword>
    <keyword evidence="5 7" id="KW-0574">Periplasm</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4 7" id="KW-0732">Signal</keyword>
    <feature type="domain" description="TolB_N" evidence="8">
        <location>
            <begin position="42"/>
            <end position="141"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004418"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00009820"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022618"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022729"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022764"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023306"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00671"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="Pfam" id="PF04052"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="ABX36032.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="441" mass="47235" checksum="07CB1BAD3C58679B" modified="2008-01-15" version="1">MPMTIDRLLSPSSLAAVPRTSRRTLLAALASTPAIPALAQFRVEVTGVGLTQLPIAIAAFKGEGQAPQKISAIIQADLERSGQFRAVDTAGVQLDETSRPDVAMWRQKSADSLAVGSITRLADGRYDVRFRLWDVVKGQDLGGQGFAVTTGDLRLVAHRISDYIYEKLTGEKGVFSTRIAYVTKAGSNYRLWVADADGENAQSALSSPEPIISPAWSPTGTQLAYVSFESRKPVVYVHDVASGRRRLVANFRGSNSAPAWSPDGNSLAVTLSRDGGSQLYLISAQGGEPRRLMQSSGIDTEPNFSSDGRSIYFVSDRGGAPQIYKVPASGGSAERVTFTGNYNISPSVSPDGKWLAYVSRVGGGFKLHVMDLGTGTVNAITDTTADESPSFAPNSRLIVYATLQQGRESLMTTTLDGKIKARLAGQGGDIREPDWGPFQRQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="42" xmlns="http://uniprot.org/uniprot">
    <accession>A9C2A1</accession>
    <name>A9C2A1_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="5">VRR-NUC domain protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ordered locus">Daci_3407</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="6" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </cofactor>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX36045.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_3407"/>
    <dbReference type="PRIDE" id="A9C2A1"/>
    <dbReference type="EnsemblBacteria" id="ABX36045">
        <property type="protein sequence ID" value="ABX36045"/>
        <property type="gene ID" value="Daci_3407"/>
    </dbReference>
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    </dbReference>
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    <keyword evidence="2" id="KW-0540">Nuclease</keyword>
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        <location>
            <begin position="4"/>
            <end position="93"/>
        </location>
    </feature>
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        <source>
            <dbReference type="ARBA" id="ARBA00001946"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022722"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="SMART" id="SM00990"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="ABX36045.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="94" mass="10764" checksum="24297E156032E0CE" modified="2008-01-15" version="1">MNMPRESAIERADRKNHKAAGRLLLKFVSPGRNGMPDDILLNPIPPEHQELVARYFRFVEYKKPKATPRADQLRRHAELRALGFTVDVIDSQSA</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="37" xmlns="http://uniprot.org/uniprot">
    <accession>A9C2E5</accession>
    <name>A9C2E5_DELAS</name>
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                <person name="Fischer K."/>
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        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
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                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
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    <dbReference type="EnsemblBacteria" id="ABX36089">
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        <property type="gene ID" value="Daci_3453"/>
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    <dbReference type="Proteomes" id="UP000000784">
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    </dbReference>
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        <location>
            <begin position="49"/>
            <end position="85"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="55"/>
            <end position="85"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX36089.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="178" mass="19705" checksum="3545AB9A68498988" modified="2008-01-15" version="1">MIAALARYWHWVVIGLLVLLAQQLHLRNLGLQRNLADAGRQAAELTASRESAARAHETQLAKREQQHAADQQTKEENYAKDKESLGRQLVAEQRTAGRLRDQLAYATARGRSGDPTDAVACQRTFDRLEALGGLAGEGVELLVEGRGLLQQRDLDVQRLLDQVTLDRQACEGEVQASE</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="41" xmlns="http://uniprot.org/uniprot">
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    </organism>
    <reference evidence="1 2" key="1">
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                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
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            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
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            <strain evidence="2">DSM 14801 / SPH-1</strain>
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    </reference>
    <reference evidence="2" key="2">
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            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
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        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
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    </dbReference>
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        <property type="entry name" value="RHS"/>
    </dbReference>
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    </dbReference>
    <dbReference type="PRINTS" id="PR00394">
        <property type="entry name" value="RHSPROTEIN"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR03696">
        <property type="entry name" value="Rhs_assc_core"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ABX36359.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="187" mass="21419" checksum="F1A640DA454448D6" modified="2008-01-15" version="1">MQDVQVLPWYLRLEWISHTQHLNMPLQQGSRLISGFDEVRPTTGARGYGRTVSGPSYAQAVKFDLRYPGQVFDEETGLSYNLHRYYDAATGRYMQADPIGLEDGWNRFGYVANNPLNDVDPQGLHPLLTRMQGLYYRYGWQGAVNPGTPSKLQLRQAPEDKQVQDTIPVDMRGKRKNQIRLAFICII</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="53" xmlns="http://uniprot.org/uniprot">
    <accession>A9C319</accession>
    <name>A9C319_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Chromosome segregation ATPase-like protein</fullName>
        </submittedName>
    </protein>
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        <name evidence="3" type="ordered locus">Daci_4192</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
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        <lineage>
            <taxon>Bacteria</taxon>
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            <taxon>Betaproteobacteria</taxon>
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    <reference evidence="3 4" key="1">
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            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
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                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
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            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
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            <strain evidence="4">DSM 14801 / SPH-1</strain>
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    </reference>
    <reference evidence="4" key="2">
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            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX36823.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_4192"/>
    <dbReference type="PRIDE" id="A9C319"/>
    <dbReference type="EnsemblBacteria" id="ABX36823">
        <property type="protein sequence ID" value="ABX36823"/>
        <property type="gene ID" value="Daci_4192"/>
    </dbReference>
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    <dbReference type="eggNOG" id="COG1196">
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    </dbReference>
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    </dbReference>
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    </dbReference>
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        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
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        <property type="match status" value="1"/>
    </dbReference>
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        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
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        </location>
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        <location>
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        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="2">
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        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="2">
        <location>
            <begin position="820"/>
            <end position="859"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ABX36823.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="880" mass="100345" checksum="C05841E6CEF91BD9" modified="2008-01-15" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="70" xmlns="http://uniprot.org/uniprot">
    <accession>A9C352</accession>
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    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
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                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
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            <dbReference type="PubMed" id="15240283"/>
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        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
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            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="4" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX37163.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012206333.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_4534"/>
    <dbReference type="PRIDE" id="A9C352"/>
    <dbReference type="EnsemblBacteria" id="ABX37163">
        <property type="protein sequence ID" value="ABX37163"/>
        <property type="gene ID" value="Daci_4534"/>
    </dbReference>
    <dbReference type="GeneID" id="60688938"/>
    <dbReference type="KEGG" id="dac:Daci_4534"/>
    <dbReference type="eggNOG" id="COG2936">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
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    <dbReference type="OMA" id="LYVDIYR"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008239">
        <property type="term" value="F:dipeptidyl-peptidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.1820">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029058">
        <property type="entry name" value="AB_hydrolase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005674">
        <property type="entry name" value="CocE/Ser_esterase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008979">
        <property type="entry name" value="Galactose-bd-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000383">
        <property type="entry name" value="Xaa-Pro-like_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013736">
        <property type="entry name" value="Xaa-Pro_dipept_C"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02129">
        <property type="entry name" value="Peptidase_S15"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08530">
        <property type="entry name" value="PepX_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00939">
        <property type="entry name" value="PepX_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF49785">
        <property type="entry name" value="SSF49785"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53474">
        <property type="entry name" value="SSF53474"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00976">
        <property type="entry name" value="NonD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="1">
        <location>
            <begin position="1"/>
            <end position="24"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5002736117" evidence="1">
        <location>
            <begin position="25"/>
            <end position="609"/>
        </location>
    </feature>
    <feature type="domain" description="PepX_C" evidence="2">
        <location>
            <begin position="312"/>
            <end position="569"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="SMART" id="SM00939"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ABX37163.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="609" mass="66755" checksum="44A6F31CD1B2A09E" modified="2008-01-15" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="51" xmlns="http://uniprot.org/uniprot">
    <accession>A9C3G5</accession>
    <name>A9C3G5_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Molybdenum ABC transporter ATP-binding protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Daci_4647</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="2" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX37276.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012206446.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_4647"/>
    <dbReference type="PRIDE" id="A9C3G5"/>
    <dbReference type="EnsemblBacteria" id="ABX37276">
        <property type="protein sequence ID" value="ABX37276"/>
        <property type="gene ID" value="Daci_4647"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_4647"/>
    <dbReference type="eggNOG" id="COG1618">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_106681_1_0_4"/>
    <dbReference type="OMA" id="WCRTACA"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018912">
        <property type="entry name" value="DUF2478"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="Pfam" id="PF10649">
        <property type="entry name" value="DUF2478"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="1" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ABX37276.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="182" mass="20013" checksum="01BFE7C5D642E51E" modified="2008-01-15" version="1">MNSPAALPLAALVHPDDEHAMELLLERVARRLQGAGWRVGGLVHRQDRYANGNKRMQLFDLRSDRQFELSQDLGCASRACSLNPQALAQASAVLRQALDDGVDLVVINRFGIVEASRQGFAAEFAAFVEAGTPVLTAVAARHLEDWRRYTGSLHAELAADEVQIEQWCQAQLERRGCASPIP</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="44" xmlns="http://uniprot.org/uniprot">
    <accession>A9C3J7</accession>
    <name>A9C3J7_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Flg_new_2 domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_4679</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX37308.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012206478.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_4679"/>
    <dbReference type="PRIDE" id="A9C3J7"/>
    <dbReference type="EnsemblBacteria" id="ABX37308">
        <property type="protein sequence ID" value="ABX37308"/>
        <property type="gene ID" value="Daci_4679"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_4679"/>
    <dbReference type="eggNOG" id="COG3291">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_1243653_0_0_4"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR044060">
        <property type="entry name" value="Bacterial_rp_domain"/>
    </dbReference>
    <dbReference type="Pfam" id="PF18998">
        <property type="entry name" value="Flg_new_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Flg_new_2" evidence="1">
        <location>
            <begin position="154"/>
            <end position="219"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF18998"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX37308.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="222" mass="23580" checksum="39A8EF64893EB071" modified="2008-01-15" version="1">MAVQNVRTSAGSKLLICAARPASYDAAGFQALAFKEIAEITDLAELGREYNQATHSPLATRRIVKRKGSFNDGSLSVPMARDMNDEGQVLLKAASVSDDSYSYCIRLQDGSSHYFTAQCMSFKLNVGSVDSITAHTAQLEIDNDIIEVPAISFTLAYTAGANGSIVGVASQTVLQGATGKPVFAQAAAGFDFEKWSDNSTENPRSDANVLANVAVQASFIPE</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-01-19" version="31" xmlns="http://uniprot.org/uniprot">
    <accession>A9BLE4</accession>
    <name>A9BLE4_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_3797</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX36429.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_3797"/>
    <dbReference type="EnsemblBacteria" id="ABX36429">
        <property type="protein sequence ID" value="ABX36429"/>
        <property type="gene ID" value="Daci_3797"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_3797"/>
    <dbReference type="HOGENOM" id="CLU_088881_0_0_4"/>
    <dbReference type="OMA" id="DQVGESE"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="133"/>
            <end position="151"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="157"/>
            <end position="174"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX36429.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="193" mass="21335" checksum="5B2D15D0D1D44896" modified="2008-01-15" version="1">MPWRLLETLFQHGLQAAVLHVFYDQVGESERYHFDAGQWVSHHAWLSRYPERQVLVDTDGEVYPQPGQEEGADGTALTNPAQPMTITRLRERDQERDRQAQESVQALLDTMASLRKSGVSPVQGIVGLFMLRAGFRGLCEAVAFTVIAALAFRGKGLWLWLALGLVLAVVLPLYRMAGARREFAGQGGGDAAS</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="46" xmlns="http://uniprot.org/uniprot">
    <accession>A9BLL2</accession>
    <name>A9BLL2_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_3866</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX36497.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012205691.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_3866"/>
    <dbReference type="PRIDE" id="A9BLL2"/>
    <dbReference type="EnsemblBacteria" id="ABX36497">
        <property type="protein sequence ID" value="ABX36497"/>
        <property type="gene ID" value="Daci_3866"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_3866"/>
    <dbReference type="eggNOG" id="ENOG5033RH1">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_870754_0_0_4"/>
    <dbReference type="OMA" id="RGFNGYA"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="55"/>
            <end position="84"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX36497.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="319" mass="35061" checksum="07CB3977F54E2003" modified="2008-01-15" version="1">MPLAITSQPAGPQFAITADAQMPTITVTAVLQNEALPAGSTPIFEWSATLTFEGGTPPTNTAYGSGRSTAHSPLPPQTSASPSWRIPFTEVRGGLLTVQVTMRAAGVERRARATWTIVGTNPTNTAIRAFANSIGADRIVFRKKMRQESSLQQFRTPGNWPKYSSDGLGGVGLCQLTRPAPTANQTWNWKDNVRGGWKLFLEKEAFARAYPGKQRKGERFKGLVRAWNQARTAQGLPAIPVELPDYTAEQLELDTLRGFNGYANNLHEYRIRMQGDQLWVTVSADGNTARAEWERIPAAERGAVGDRNYVDNVLAREDF</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="79" xmlns="http://uniprot.org/uniprot">
    <accession>A9BLU6</accession>
    <name>A9BLU6_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Transcriptional regulator, GntR family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ordered locus">Daci_4254</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="6" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX36885.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012206057.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_4254"/>
    <dbReference type="PRIDE" id="A9BLU6"/>
    <dbReference type="EnsemblBacteria" id="ABX36885">
        <property type="protein sequence ID" value="ABX36885"/>
        <property type="gene ID" value="Daci_4254"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_4254"/>
    <dbReference type="eggNOG" id="COG1802">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_017584_5_4_4"/>
    <dbReference type="OMA" id="SLTMQVE"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003700">
        <property type="term" value="F:DNA-binding transcription factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.120.530">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011711">
        <property type="entry name" value="GntR_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008920">
        <property type="entry name" value="TF_FadR/GntR_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000524">
        <property type="entry name" value="Tscrpt_reg_HTH_GntR"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036390">
        <property type="entry name" value="WH_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07729">
        <property type="entry name" value="FCD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00392">
        <property type="entry name" value="GntR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00895">
        <property type="entry name" value="FCD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00345">
        <property type="entry name" value="HTH_GNTR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46785">
        <property type="entry name" value="SSF46785"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48008">
        <property type="entry name" value="SSF48008"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50949">
        <property type="entry name" value="HTH_GNTR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0804">Transcription</keyword>
    <keyword evidence="1" id="KW-0805">Transcription regulation</keyword>
    <feature type="domain" description="HTH gntR-type" evidence="4">
        <location>
            <begin position="13"/>
            <end position="80"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023015"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023163"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="PROSITE" id="PS50949"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="ABX36885.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="251" mass="27005" checksum="1070BBA7C3A40615" modified="2008-01-15" version="1">MAINELVTPLKRQTLSSDVYAQLRELLITGQMIPGEQISLRTTASALGVSVMPVREAVHRLVAEQALELTPNRALRVPLMTESAFREITRIRVNLEGLATEQAARQLPAAELERIAALQDRFAAEMASAVPDGARLIAFNKDFHFAVYSAAGMPMLLQMIEALWLRIGPILNHDMRSGSRRVSEQVAVGHHARLVEALRRGDAPAAKEALRGDIESAADYIVSAGVLVTADSGLNGVSGLSGPASPGEEAR</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="82" xmlns="http://uniprot.org/uniprot">
    <accession>A9BLV9</accession>
    <name>A9BLV9_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Transcriptional regulator, LuxR family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Daci_4267</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="4" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX36898.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012206070.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_4267"/>
    <dbReference type="PRIDE" id="A9BLV9"/>
    <dbReference type="EnsemblBacteria" id="ABX36898">
        <property type="protein sequence ID" value="ABX36898"/>
        <property type="gene ID" value="Daci_4267"/>
    </dbReference>
    <dbReference type="GeneID" id="60688530"/>
    <dbReference type="KEGG" id="dac:Daci_4267"/>
    <dbReference type="eggNOG" id="COG2197">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_105330_0_0_4"/>
    <dbReference type="OMA" id="DYQTAFQ"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006355">
        <property type="term" value="P:regulation of transcription, DNA-templated"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd06170">
        <property type="entry name" value="LuxR_C_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="CDD" id="cd00130">
        <property type="entry name" value="PAS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000014">
        <property type="entry name" value="PAS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035965">
        <property type="entry name" value="PAS-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016032">
        <property type="entry name" value="Sig_transdc_resp-reg_C-effctor"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000792">
        <property type="entry name" value="Tscrpt_reg_LuxR_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00196">
        <property type="entry name" value="GerE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13426">
        <property type="entry name" value="PAS_9"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00038">
        <property type="entry name" value="HTHLUXR"/>
    </dbReference>
    <dbReference type="SMART" id="SM00421">
        <property type="entry name" value="HTH_LUXR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00091">
        <property type="entry name" value="PAS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46894">
        <property type="entry name" value="SSF46894"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55785">
        <property type="entry name" value="SSF55785"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00229">
        <property type="entry name" value="sensory_box"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00622">
        <property type="entry name" value="HTH_LUXR_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50043">
        <property type="entry name" value="HTH_LUXR_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HTH luxR-type" evidence="2">
        <location>
            <begin position="116"/>
            <end position="180"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS50043"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ABX36898.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="180" mass="20329" checksum="B08503FD18420416" modified="2008-01-15" version="1">MDIDYRLAFEAAPVGLVISRNRTMIDCNRQVCEMFEASREVLIGQTFQILYPSADEYERLGARIAPILNARGFYSDNRIMKRANGETFWCHVTGRTLDRSDPHASGIWSFEDLSAHRPVKAELTGREREVAARLLEGLTSKEIGRALAISHRTVEIYRARLMRKYGASTAADLVHKLVSG</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="50" xmlns="http://uniprot.org/uniprot">
    <accession>A9BLX4</accession>
    <name>A9BLX4_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_4282</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX36913.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012206085.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="PRIDE" id="A9BLX4"/>
    <dbReference type="EnsemblBacteria" id="ABX36913">
        <property type="protein sequence ID" value="ABX36913"/>
        <property type="gene ID" value="Daci_4282"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_4282"/>
    <dbReference type="eggNOG" id="COG5339">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_040145_0_0_4"/>
    <dbReference type="OMA" id="LPAYSMK"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010352">
        <property type="entry name" value="DUF945"/>
    </dbReference>
    <dbReference type="Pfam" id="PF06097">
        <property type="entry name" value="DUF945"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="216"/>
            <end position="242"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX36913.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="517" mass="54408" checksum="74CC2225B2E422E8" modified="2008-01-15" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="65" xmlns="http://uniprot.org/uniprot">
    <accession>A9BM06</accession>
    <name>A9BM06_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Prephenate dehydrogenase</fullName>
            <ecNumber evidence="2">1.3.1.12</ecNumber>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_4722</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EC" id="1.3.1.12" evidence="2"/>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX37351.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012206521.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_4722"/>
    <dbReference type="PRIDE" id="A9BM06"/>
    <dbReference type="EnsemblBacteria" id="ABX37351">
        <property type="protein sequence ID" value="ABX37351"/>
        <property type="gene ID" value="Daci_4722"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_4722"/>
    <dbReference type="eggNOG" id="COG0287">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_055968_0_1_4"/>
    <dbReference type="OMA" id="MWRDICL"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008977">
        <property type="term" value="F:prephenate dehydrogenase (NAD+) activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004665">
        <property type="term" value="F:prephenate dehydrogenase (NADP+) activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006571">
        <property type="term" value="P:tyrosine biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008927">
        <property type="entry name" value="6-PGluconate_DH-like_C_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036291">
        <property type="entry name" value="NAD(P)-bd_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003099">
        <property type="entry name" value="Prephen_DH"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02153">
        <property type="entry name" value="PDH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48179">
        <property type="entry name" value="SSF48179"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51735">
        <property type="entry name" value="SSF51735"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51176">
        <property type="entry name" value="PDH_ADH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Prephenate/arogenate dehydrogenase" evidence="1">
        <location>
            <begin position="5"/>
            <end position="292"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS51176"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX37351.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="292" mass="31313" checksum="0D048C56AF5D2496" modified="2008-01-15" version="1">MQPFEQLGLIGCGLMGGSFALALKQAGLVKRVVGYSKSPSTTERARQMGVIDVEAPSALLAAAGADLVLLAVPVAATEATLKSIKHLVTPEMMIMDVGSTKVDVVHAARSALRDQLGSFVPAHPIAGKEVSGVEHSDPQLYKGAQVILTPTERTLTDHLQKARSLWELLGCRVRAMSPEAHDSAFATVSHLPHLLAFAMMQSVITQPDSDDVLSLAGPGFRDFTRIAAGDPKMWRDVLLANSEQVLAQSRQFQQALQQLESLIQAGDGQGLEDRLTLASAARAHWRMGAPRR</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="55" xmlns="http://uniprot.org/uniprot">
    <accession>A9BMB5</accession>
    <name>A9BMB5_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Diguanylate cyclase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Daci_4831</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="4" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX37460.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012206630.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_4831"/>
    <dbReference type="PRIDE" id="A9BMB5"/>
    <dbReference type="EnsemblBacteria" id="ABX37460">
        <property type="protein sequence ID" value="ABX37460"/>
        <property type="gene ID" value="Daci_4831"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_4831"/>
    <dbReference type="eggNOG" id="COG3706">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_000445_11_1_4"/>
    <dbReference type="OMA" id="CVEWERE"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd01949">
        <property type="entry name" value="GGDEF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.70.270">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000160">
        <property type="entry name" value="GGDEF_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029787">
        <property type="entry name" value="Nucleotide_cyclase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043128">
        <property type="entry name" value="Rev_trsase/Diguanyl_cyclase"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00990">
        <property type="entry name" value="GGDEF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00267">
        <property type="entry name" value="GGDEF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55073">
        <property type="entry name" value="SSF55073"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00254">
        <property type="entry name" value="GGDEF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50887">
        <property type="entry name" value="GGDEF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="6"/>
            <end position="29"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="63"/>
            <end position="82"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="94"/>
            <end position="113"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="153"/>
            <end position="173"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="193"/>
            <end position="217"/>
        </location>
    </feature>
    <feature type="domain" description="GGDEF" evidence="2">
        <location>
            <begin position="256"/>
            <end position="388"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS50887"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ABX37460.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="392" mass="43655" checksum="294ECF81C554EE7D" modified="2008-01-15" version="1">MVTLTARHLLALAVPLCTLLLAGCFYVCWRHLRARRELRSMSFAFTGFSLALLLQILERPAAVPVNALTTAALQLCAAWFITEAMAIRQGVRPDAPLAAVFGGAVLVALGYYAWAVPDAQARQHVLNFGLGLQLALPLWRLPRRHPCTGWDRLLLWVFVVFALSFFVRTLWVTPRAASVSASAAGEWLGISSSWMALQLSLLVFGLLFAMLFLAAAVRDTVQELHEERDRDPLTGLLNRRAFKEAVQRRLAEQPQLSAAVLVCDLDHFKRVNDGWGHAAGDEVLQRFARLLLRSTRQQDLVARFGGEEFVALLPHADPLAAQWITRRIQTQLRLMGFSALPDDIRITASFGVAWMAQGQTLEQALARADAMLYEAKRAGRDRVRLVPQEEDA</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="75" xmlns="http://uniprot.org/uniprot">
    <accession>A9BMN4</accession>
    <name>A9BMN4_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="14">ADP-dependent (S)-NAD(P)H-hydrate dehydratase</fullName>
            <ecNumber evidence="14">4.2.1.136</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="14">ADP-dependent NAD(P)HX dehydratase</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="14" type="primary">nnrD</name>
        <name evidence="17" type="ordered locus">Daci_4950</name>
    </gene>
    <organism evidence="17 18">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="17 18" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="18">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="18" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="18">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="13 15">Bifunctional enzyme that catalyzes the epimerization of the S- and R-forms of NAD(P)HX and the dehydration of the S-form of NAD(P)HX at the expense of ADP, which is converted to AMP. This allows the repair of both epimers of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration.</text>
    </comment>
    <comment type="function">
        <text evidence="14">Catalyzes the dehydration of the S-form of NAD(P)HX at the expense of ADP, which is converted to AMP. Together with NAD(P)HX epimerase, which catalyzes the epimerization of the S- and R-forms, the enzyme allows the repair of both epimers of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1 15">
            <text>(6R)-NADHX = (6S)-NADHX</text>
            <dbReference type="Rhea" id="RHEA:32215"/>
            <dbReference type="ChEBI" id="CHEBI:64074"/>
            <dbReference type="ChEBI" id="CHEBI:64075"/>
            <dbReference type="EC" id="5.1.99.6"/>
        </reaction>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="2 15">
            <text>(6R)-NADPHX = (6S)-NADPHX</text>
            <dbReference type="Rhea" id="RHEA:32227"/>
            <dbReference type="ChEBI" id="CHEBI:64076"/>
            <dbReference type="ChEBI" id="CHEBI:64077"/>
            <dbReference type="EC" id="5.1.99.6"/>
        </reaction>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="3 14 15">
            <text>(6S)-NADHX + ADP = AMP + H(+) + NADH + phosphate</text>
            <dbReference type="Rhea" id="RHEA:32223"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:43474"/>
            <dbReference type="ChEBI" id="CHEBI:57945"/>
            <dbReference type="ChEBI" id="CHEBI:64074"/>
            <dbReference type="ChEBI" id="CHEBI:456215"/>
            <dbReference type="ChEBI" id="CHEBI:456216"/>
            <dbReference type="EC" id="4.2.1.136"/>
        </reaction>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="4 14 15">
            <text>(6S)-NADPHX + ADP = AMP + H(+) + NADPH + phosphate</text>
            <dbReference type="Rhea" id="RHEA:32235"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:43474"/>
            <dbReference type="ChEBI" id="CHEBI:57783"/>
            <dbReference type="ChEBI" id="CHEBI:64076"/>
            <dbReference type="ChEBI" id="CHEBI:456215"/>
            <dbReference type="ChEBI" id="CHEBI:456216"/>
            <dbReference type="EC" id="4.2.1.136"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="15">
            <name>K(+)</name>
            <dbReference type="ChEBI" id="CHEBI:29103"/>
        </cofactor>
        <text evidence="15">Binds 1 potassium ion per subunit.</text>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="14">
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </cofactor>
    </comment>
    <comment type="subunit">
        <text evidence="14">Homotetramer.</text>
    </comment>
    <comment type="similarity">
        <text evidence="14">Belongs to the NnrD/CARKD family.</text>
    </comment>
    <comment type="similarity">
        <text evidence="6 15">In the C-terminal section; belongs to the NnrD/CARKD family.</text>
    </comment>
    <comment type="similarity">
        <text evidence="5 15">In the N-terminal section; belongs to the NnrE/AIBP family.</text>
    </comment>
    <dbReference type="EC" id="4.2.1.136" evidence="14"/>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX37579.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012206749.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_4950"/>
    <dbReference type="PRIDE" id="A9BMN4"/>
    <dbReference type="EnsemblBacteria" id="ABX37579">
        <property type="protein sequence ID" value="ABX37579"/>
        <property type="gene ID" value="Daci_4950"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_4950"/>
    <dbReference type="eggNOG" id="COG0062">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="eggNOG" id="COG0063">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_024853_4_3_4"/>
    <dbReference type="OMA" id="HNGGDAL"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0052855">
        <property type="term" value="F:ADP-dependent NAD(P)H-hydrate dehydratase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016301">
        <property type="term" value="F:kinase activity"/>
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        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
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    <dbReference type="GO" id="GO:0052856">
        <property type="term" value="F:NADHX epimerase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
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        <property type="term" value="F:NADPHX epimerase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
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    <dbReference type="GO" id="GO:0046496">
        <property type="term" value="P:nicotinamide nucleotide metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016310">
        <property type="term" value="P:phosphorylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
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        <property type="match status" value="1"/>
    </dbReference>
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        <property type="match status" value="1"/>
    </dbReference>
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        <property type="match status" value="1"/>
    </dbReference>
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        <property type="match status" value="1"/>
    </dbReference>
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        <property type="entry name" value="Carbohydrate_kinase_pred_CS"/>
    </dbReference>
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        <property type="entry name" value="CARKD"/>
    </dbReference>
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        <property type="entry name" value="Nnr"/>
    </dbReference>
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        <property type="entry name" value="Ribokinase-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004443">
        <property type="entry name" value="YjeF_N_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036652">
        <property type="entry name" value="YjeF_N_dom_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01256">
        <property type="entry name" value="Carb_kinase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03853">
        <property type="entry name" value="YjeF_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF017184">
        <property type="entry name" value="Nnr"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53613">
        <property type="entry name" value="SSF53613"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF64153">
        <property type="entry name" value="SSF64153"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00196">
        <property type="entry name" value="yjeF_cterm"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01050">
        <property type="entry name" value="YJEF_C_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51383">
        <property type="entry name" value="YJEF_C_3"/>
        <property type="match status" value="1"/>
    </dbReference>
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        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="8 14 15" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="11 15" id="KW-0413">Isomerase</keyword>
    <keyword evidence="17" id="KW-0418">Kinase</keyword>
    <keyword evidence="12 14 15" id="KW-0456">Lyase</keyword>
    <keyword evidence="15" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="10 14 15" id="KW-0520">NAD</keyword>
    <keyword evidence="9 14 15" id="KW-0521">NADP</keyword>
    <keyword evidence="7 14 15" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="15" id="KW-0630">Potassium</keyword>
    <keyword evidence="18" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="17" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="YjeF N-terminal" evidence="16">
        <location>
            <begin position="18"/>
            <end position="241"/>
        </location>
    </feature>
    <feature type="binding site" evidence="14">
        <location>
            <position position="291"/>
        </location>
        <ligand>
            <name>(6S)-NADPHX</name>
            <dbReference type="ChEBI" id="CHEBI:64076"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="14">
        <location>
            <position position="346"/>
        </location>
        <ligand>
            <name>(6S)-NADPHX</name>
            <dbReference type="ChEBI" id="CHEBI:64076"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="14">
        <location>
            <position position="402"/>
        </location>
        <ligand>
            <name>(6S)-NADPHX</name>
            <dbReference type="ChEBI" id="CHEBI:64076"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="14">
        <location>
            <begin position="439"/>
            <end position="443"/>
        </location>
        <ligand>
            <name>AMP</name>
            <dbReference type="ChEBI" id="CHEBI:456215"/>
        </ligand>
    </feature>
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        <location>
            <position position="473"/>
        </location>
        <ligand>
            <name>AMP</name>
            <dbReference type="ChEBI" id="CHEBI:456215"/>
        </ligand>
    </feature>
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        <location>
            <position position="474"/>
        </location>
        <ligand>
            <name>(6S)-NADPHX</name>
            <dbReference type="ChEBI" id="CHEBI:64076"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00000013"/>
        </source>
    </evidence>
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        <source>
            <dbReference type="ARBA" id="ARBA00000909"/>
        </source>
    </evidence>
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        <source>
            <dbReference type="ARBA" id="ARBA00001026"/>
        </source>
    </evidence>
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        <source>
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        </source>
    </evidence>
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        <source>
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        </source>
    </evidence>
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        <source>
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        </source>
    </evidence>
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        <source>
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        </source>
    </evidence>
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        <source>
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        </source>
    </evidence>
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        <source>
            <dbReference type="ARBA" id="ARBA00022857"/>
        </source>
    </evidence>
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        <source>
            <dbReference type="ARBA" id="ARBA00023027"/>
        </source>
    </evidence>
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        <source>
            <dbReference type="ARBA" id="ARBA00023235"/>
        </source>
    </evidence>
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        <source>
            <dbReference type="ARBA" id="ARBA00023239"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="13">
        <source>
            <dbReference type="ARBA" id="ARBA00025153"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="14">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01965"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="15">
        <source>
            <dbReference type="PIRNR" id="PIRNR017184"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="16">
        <source>
            <dbReference type="PROSITE" id="PS51385"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="17">
        <source>
            <dbReference type="EMBL" id="ABX37579.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="18">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="525" mass="54722" checksum="D586CF1EE4F9B77E" modified="2008-01-15" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="58" xmlns="http://uniprot.org/uniprot">
    <accession>A9BMU1</accession>
    <name>A9BMU1_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">40-residue YVTN family beta-propeller repeat protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_5007</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX37636.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
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        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
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    <dbReference type="PRIDE" id="A9BMU1"/>
    <dbReference type="EnsemblBacteria" id="ABX37636">
        <property type="protein sequence ID" value="ABX37636"/>
        <property type="gene ID" value="Daci_5007"/>
    </dbReference>
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    <dbReference type="eggNOG" id="COG3391">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
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    <dbReference type="OMA" id="KTLWVNN"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
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        <property type="match status" value="2"/>
    </dbReference>
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        <property type="entry name" value="N2O_reductase_N"/>
    </dbReference>
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        <property type="entry name" value="WD40/YVTN_repeat-like_dom_sf"/>
    </dbReference>
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        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
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    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="29"/>
            <end position="50"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX37636.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="410" mass="43756" checksum="712A6F125929D7D8" modified="2008-01-15" version="1">MPQSVRGADWRSYTAQILRRWCFVKRLSVGRLSAAVALVVGGGALAWLAVASLPGSKSARAASATSAAVQAQAASAQAAAVPAAPSVPSATAAPAAPVARVTPPPQTQGPTPIFVLNSLDANISIVDPVTWQETARIPTGKEPHHLYLTPDEKSLVVANALGDTLTLVDPRTGEVQRVIRDIIDPYHLRFSPDMKWFVTAANRLNHIDIYRWDGQNPQLVKRVPTGKTPSHLWIDAKSTTIYSTMQDSDALVAIDIATQTIKARVPTGPMPADLYGSPDGTKLFIGLTGSDGVEVFDITGPEPRSVARIKTAAGAHAMRAAGDGRHLYVSNRVANTISKIDMQTNQVVANYPAPGGPDCMDVSADGRYLLVSSRWARKLSVIDTVEKKVVQQVKVGKSPHGVWTLAHAQR</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="76" xmlns="http://uniprot.org/uniprot">
    <accession>A9BMW6</accession>
    <name>A9BMW6_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Alkaline phosphatase</fullName>
            <ecNumber evidence="3">3.1.3.1</ecNumber>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Daci_5032</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="4" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EC" id="3.1.3.1" evidence="3"/>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX37661.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012206831.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_5032"/>
    <dbReference type="PRIDE" id="A9BMW6"/>
    <dbReference type="EnsemblBacteria" id="ABX37661">
        <property type="protein sequence ID" value="ABX37661"/>
        <property type="gene ID" value="Daci_5032"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_5032"/>
    <dbReference type="eggNOG" id="COG3540">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_015982_2_1_4"/>
    <dbReference type="OMA" id="HWTDGWD"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004035">
        <property type="term" value="F:alkaline phosphatase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="CDD" id="cd07389">
        <property type="entry name" value="MPP_PhoD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.60.21.70">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029052">
        <property type="entry name" value="Metallo-depent_PP-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018946">
        <property type="entry name" value="PhoD-like_MPP"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038607">
        <property type="entry name" value="PhoD-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR032093">
        <property type="entry name" value="PhoD_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006311">
        <property type="entry name" value="TAT_signal"/>
    </dbReference>
    <dbReference type="Pfam" id="PF09423">
        <property type="entry name" value="PhoD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF16655">
        <property type="entry name" value="PhoD_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56300">
        <property type="entry name" value="SSF56300"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51318">
        <property type="entry name" value="TAT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="PhoD_N" evidence="2">
        <location>
            <begin position="46"/>
            <end position="144"/>
        </location>
    </feature>
    <feature type="domain" description="PhoD" evidence="1">
        <location>
            <begin position="157"/>
            <end position="512"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF09423"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF16655"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ABX37661.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="544" mass="60124" checksum="6213C1F7DEB58FA3" modified="2008-01-15" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="63" xmlns="http://uniprot.org/uniprot">
    <accession>A9BMX7</accession>
    <name>A9BMX7_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Histidine kinase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ordered locus">Daci_5043</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="5" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX37672.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012206842.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_5043"/>
    <dbReference type="PRIDE" id="A9BMX7"/>
    <dbReference type="EnsemblBacteria" id="ABX37672">
        <property type="protein sequence ID" value="ABX37672"/>
        <property type="gene ID" value="Daci_5043"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_5043"/>
    <dbReference type="eggNOG" id="COG0642">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_397783_0_0_4"/>
    <dbReference type="OMA" id="WHAVGHE"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016301">
        <property type="term" value="F:kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016310">
        <property type="term" value="P:phosphorylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.565.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003594">
        <property type="entry name" value="HATPase_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036890">
        <property type="entry name" value="HATPase_C_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005467">
        <property type="entry name" value="His_kinase_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02518">
        <property type="entry name" value="HATPase_c"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00387">
        <property type="entry name" value="HATPase_c"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55874">
        <property type="entry name" value="SSF55874"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50109">
        <property type="entry name" value="HIS_KIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-0418">Kinase</keyword>
    <keyword evidence="2" id="KW-0472">Membrane</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4" id="KW-0808">Transferase</keyword>
    <keyword evidence="2" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="2" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="28"/>
            <end position="49"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="430"/>
            <end position="452"/>
        </location>
    </feature>
    <feature type="domain" description="Histidine kinase" evidence="3">
        <location>
            <begin position="527"/>
            <end position="740"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="199"/>
            <end position="221"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="PROSITE" id="PS50109"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="ABX37672.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="740" mass="79844" checksum="7C8750B452D30BDE" modified="2008-01-15" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="70" xmlns="http://uniprot.org/uniprot">
    <accession>A9BMY8</accession>
    <name>A9BMY8_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="3 8 10">FAD:protein FMN transferase</fullName>
            <ecNumber evidence="2 8 10">2.7.1.180</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="8">Flavin transferase</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="11" type="ordered locus">Daci_5054</name>
    </gene>
    <organism evidence="11 12">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="11 12" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="12">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="12" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="12">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="10">Flavin transferase that catalyzes the transfer of the FMN moiety of FAD and its covalent binding to the hydroxyl group of a threonine residue in a target flavoprotein.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1 8 10">
            <text>FAD + L-threonyl-[protein] = AMP + FMN-L-threonyl-[protein] + H(+)</text>
            <dbReference type="Rhea" id="RHEA:36847"/>
            <dbReference type="Rhea" id="RHEA-COMP:11060"/>
            <dbReference type="Rhea" id="RHEA-COMP:11061"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:30013"/>
            <dbReference type="ChEBI" id="CHEBI:57692"/>
            <dbReference type="ChEBI" id="CHEBI:74257"/>
            <dbReference type="ChEBI" id="CHEBI:456215"/>
            <dbReference type="EC" id="2.7.1.180"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="9">
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </cofactor>
        <cofactor evidence="9">
            <name>Mn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29035"/>
        </cofactor>
        <text evidence="9">Magnesium. Can also use manganese.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="10">Cell inner membrane</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="8 10">Belongs to the ApbE family.</text>
    </comment>
    <dbReference type="EC" id="2.7.1.180" evidence="2 8 10"/>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX37683.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_5054"/>
    <dbReference type="PRIDE" id="A9BMY8"/>
    <dbReference type="EnsemblBacteria" id="ABX37683">
        <property type="protein sequence ID" value="ABX37683"/>
        <property type="gene ID" value="Daci_5054"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_5054"/>
    <dbReference type="eggNOG" id="COG1477">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_044403_0_2_4"/>
    <dbReference type="OMA" id="MGTYYSI"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016740">
        <property type="term" value="F:transferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0017013">
        <property type="term" value="P:protein flavinylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.10.520.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR024932">
        <property type="entry name" value="ApbE"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003374">
        <property type="entry name" value="ApbE-like_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30040">
        <property type="entry name" value="PTHR30040"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02424">
        <property type="entry name" value="ApbE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF006268">
        <property type="entry name" value="ApbE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF143631">
        <property type="entry name" value="SSF143631"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="10" id="KW-0997">Cell inner membrane</keyword>
    <keyword evidence="10" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="8 10" id="KW-0274">FAD</keyword>
    <keyword evidence="4 8 10" id="KW-0285">Flavoprotein</keyword>
    <keyword evidence="10 11" id="KW-0449">Lipoprotein</keyword>
    <keyword evidence="7 8 9" id="KW-0460">Magnesium</keyword>
    <keyword evidence="10" id="KW-0472">Membrane</keyword>
    <keyword evidence="6 8 9" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="12" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="5 8 10" id="KW-0808">Transferase</keyword>
    <feature type="binding site" evidence="9">
        <location>
            <position position="202"/>
        </location>
        <ligand>
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="9">
        <location>
            <position position="314"/>
        </location>
        <ligand>
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="9">
        <location>
            <position position="318"/>
        </location>
        <ligand>
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001219"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00011955"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00016337"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022630"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022842"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="PIRNR" id="PIRNR006268"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="PIRSR" id="PIRSR006268-2"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="RuleBase" id="RU363002"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="EMBL" id="ABX37683.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="362" mass="38405" checksum="2D9B04FF322138C8" modified="2008-01-15" version="1">MPAPVRVSFAPALLQGSAGRGLAAPVSTGVASFAVSGYAPQAVRRSDPAALQTLTGEAMGTTWSVRLHNPDFRPLDEARQAIEAALALVVRQMSNWEAGSDISRFNRAEPGSWHALPPEFFTVLACALDWAQASGGAWDPTVGPLVDLWGFGPRAEKEQGAGIPDAYALRRARERVGYQHIVLDLAGRRALQPGAVHVDFSGIAKGYSVDLVAERLQALGHTDFLVEVGGELRACGQRPGNQPWRVAVASMADQSTPLALPLRDMAIATSGDHWHAFEQGGRRYSHTIDPRSGEPVAHGLTSVTVLHAECMQADALATVLTVLGPREGLDFAEQRGVAALLCERTAQGPAMAMTTAFAALLP</sequence>
</entry>
<entry dataset="Swiss-Prot" created="2009-03-24" modified="2022-08-03" version="77" xmlns="http://uniprot.org/uniprot">
    <accession>A9BNJ5</accession>
    <name>RNC_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Ribonuclease 3</fullName>
            <ecNumber evidence="1">3.1.26.3</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="1">Ribonuclease III</fullName>
            <shortName evidence="1">RNase III</shortName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="1" type="primary">rnc</name>
        <name type="ordered locus">Daci_5261</name>
    </gene>
    <organism>
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference key="1">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain>DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="1">Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Processes some mRNAs, and tRNAs when they are encoded in the rRNA operon. Processes pre-crRNA and tracrRNA of type II CRISPR loci if present in the organism.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>Endonucleolytic cleavage to 5'-phosphomonoester.</text>
            <dbReference type="EC" id="3.1.26.3"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </cofactor>
    </comment>
    <comment type="subunit">
        <text evidence="1">Homodimer.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="1">Belongs to the ribonuclease III family.</text>
    </comment>
    <dbReference type="EC" id="3.1.26.3" evidence="1"/>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX37890.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012207060.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A9BNJ5"/>
    <dbReference type="SMR" id="A9BNJ5"/>
    <dbReference type="STRING" id="398578.Daci_5261"/>
    <dbReference type="PRIDE" id="A9BNJ5"/>
    <dbReference type="EnsemblBacteria" id="ABX37890">
        <property type="protein sequence ID" value="ABX37890"/>
        <property type="gene ID" value="Daci_5261"/>
    </dbReference>
    <dbReference type="GeneID" id="60689605"/>
    <dbReference type="KEGG" id="dac:Daci_5261"/>
    <dbReference type="eggNOG" id="COG0571">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_000907_1_1_4"/>
    <dbReference type="OMA" id="LTHKSCK"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
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        <ligand>
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        </ligand>
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        <location>
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        <ligand>
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    </feature>
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        <location>
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        <ligand>
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    </feature>
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        <source>
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        </source>
    </evidence>
    <sequence length="227" mass="24841" checksum="76A69562408C7769" modified="2008-01-15" version="1">MPPLLNALQLRLQHQFAEPALLQRAVTHRSFSADNNERLEFLGDSVLNLAISSLLYQRLSSMPEGDLSRVRANLVKEGTLHQIALRLQLPDLLRLGEGESKSGGKQRPSILADAVEALIGAVYLDAGYAAGEKVVHHLFEGVDINPHMRAAEKDAKTALQEWLQGRRMKLPQYEVVATTGAAHRQTFEVACAIAELQLQARGTGASRRAAEQTAATAMLELLKARHA</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="63" xmlns="http://uniprot.org/uniprot">
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        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
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        </source>
    </reference>
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            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
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                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
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                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
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            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
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    </dbReference>
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            <begin position="2"/>
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        </location>
    </feature>
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        <source>
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        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX37975.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="174" mass="18688" checksum="292FD19BA84022ED" modified="2008-01-15" version="1">MPTIRSSLDGDLAAITSIYRHHVLHGTGTFETDPPAESDMATRRADVLAKGLPYLVAVDEQGQVLGFAYANWFKPRPAYRFSAEDSIYVHDAARGQGLGRLLLDALSRECEAAGVRKLLAVIGDSANAGSIGVHRAAGFTPAGTLSSMGWKFGRWLDIVLMEKTLGDGNRSSPE</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="48" xmlns="http://uniprot.org/uniprot">
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        <submittedName>
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        </submittedName>
    </protein>
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    <organism evidence="4 5">
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        <lineage>
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        </lineage>
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    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
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            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="5" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
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                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX38006.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
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        <property type="gene ID" value="Daci_5377"/>
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    </dbReference>
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    <proteinExistence type="predicted"/>
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        <location>
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            <end position="398"/>
        </location>
    </feature>
    <feature type="domain" description="IPTL-CTERM" evidence="3">
        <location>
            <begin position="547"/>
            <end position="575"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF01345"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF18203"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="ABX38006.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="580" mass="60042" checksum="0596317911F5D930" modified="2008-01-15" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="61" xmlns="http://uniprot.org/uniprot">
    <accession>A9BNW6</accession>
    <name>A9BNW6_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">HNH endonuclease</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_5382</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
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        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
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                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
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            <dbReference type="PubMed" id="15240283"/>
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        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
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                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
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                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
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        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
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        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_5382"/>
    <dbReference type="PRIDE" id="A9BNW6"/>
    <dbReference type="EnsemblBacteria" id="ABX38011">
        <property type="protein sequence ID" value="ABX38011"/>
        <property type="gene ID" value="Daci_5382"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_5382"/>
    <dbReference type="eggNOG" id="COG1403">
        <property type="taxonomic scope" value="Bacteria"/>
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    <dbReference type="OMA" id="GMPLEWI"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004519">
        <property type="term" value="F:endonuclease activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd00085">
        <property type="entry name" value="HNHc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029471">
        <property type="entry name" value="HNH_5"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003615">
        <property type="entry name" value="HNH_nuc"/>
    </dbReference>
    <dbReference type="Pfam" id="PF14279">
        <property type="entry name" value="HNH_5"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00507">
        <property type="entry name" value="HNHc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0255">Endonuclease</keyword>
    <keyword evidence="2" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="2" id="KW-0540">Nuclease</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HNHc" evidence="1">
        <location>
            <begin position="78"/>
            <end position="131"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="SMART" id="SM00507"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX38011.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="202" mass="22391" checksum="060EB33949FCDCFE" modified="2008-01-15" version="1">MKVLKLSAQGLPQSWITLEQAALHYAADDVRWESGGEVACFRGGHNAVTGCQSVIHINSIIGTRGAPAINPHSLQPGLTNGKLFARDRCICAYCGRVFHENDLTREHIVPISAGGGHQWMNLVTACRSCNHRKGARTPEQARMPLLYTPYIPSLWEDFILRNRRILADQMEFLLLHVPRSSRWARDGFAEGGGAPTHEVAWA</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="86" xmlns="http://uniprot.org/uniprot">
    <accession>A9BP00</accession>
    <name>A9BP00_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Two component transcriptional regulator, winged helix family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ordered locus">Daci_5416</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="6" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX38045.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012207214.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_5416"/>
    <dbReference type="PRIDE" id="A9BP00"/>
    <dbReference type="EnsemblBacteria" id="ABX38045">
        <property type="protein sequence ID" value="ABX38045"/>
        <property type="gene ID" value="Daci_5416"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_5416"/>
    <dbReference type="eggNOG" id="COG0745">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_000445_30_0_4"/>
    <dbReference type="OMA" id="RTMDTHV"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000160">
        <property type="term" value="P:phosphorelay signal transduction system"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006355">
        <property type="term" value="P:regulation of transcription, DNA-templated"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd00383">
        <property type="entry name" value="trans_reg_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011006">
        <property type="entry name" value="CheY-like_superfamily"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001867">
        <property type="entry name" value="OmpR/PhoB-type_DNA-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001789">
        <property type="entry name" value="Sig_transdc_resp-reg_receiver"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR039420">
        <property type="entry name" value="WalR-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR48111">
        <property type="entry name" value="PTHR48111"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00072">
        <property type="entry name" value="Response_reg"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00486">
        <property type="entry name" value="Trans_reg_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00448">
        <property type="entry name" value="REC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00862">
        <property type="entry name" value="Trans_reg_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52172">
        <property type="entry name" value="SSF52172"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51755">
        <property type="entry name" value="OMPR_PHOB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50110">
        <property type="entry name" value="RESPONSE_REGULATORY"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="1" id="KW-0597">Phosphoprotein</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Response regulatory" evidence="3">
        <location>
            <begin position="2"/>
            <end position="117"/>
        </location>
    </feature>
    <feature type="domain" description="OmpR/PhoB-type" evidence="4">
        <location>
            <begin position="126"/>
            <end position="225"/>
        </location>
    </feature>
    <feature type="DNA-binding region" description="OmpR/PhoB-type" evidence="2">
        <location>
            <begin position="126"/>
            <end position="225"/>
        </location>
    </feature>
    <feature type="modified residue" description="4-aspartylphosphate" evidence="1">
        <location>
            <position position="51"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00169"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU01091"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="PROSITE" id="PS50110"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="PROSITE" id="PS51755"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="ABX38045.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="237" mass="26919" checksum="8BB3885A1CA07198" modified="2008-01-15" version="1">MRIAALDDDPLQLEMLRQVALETGHSCHTYQTGSALQLELRRESFDLLIVDWHLPDMEGTDLVRWARGHVSRELPILIITHRSEEADIVEGLSCGADDFMVKPVRHAELRARMAALLRRAYPVNTQSVLEFGPYRFLTTTNSLEMHGQPIEVTHREYTLALTLFQNQGRLLSREHLREAVWGHNAEVQSRSLDTHISRLRALLNLRAGQPYAISAVYGYGYRLDVPDAALQALQQAS</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="73" xmlns="http://uniprot.org/uniprot">
    <accession>A9BP90</accession>
    <name>A9BP90_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="8">Acetyl-CoA carboxylase, biotin carboxylase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="8" type="ordered locus">Daci_0007</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="9" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX32654.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012201947.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_0007"/>
    <dbReference type="PRIDE" id="A9BP90"/>
    <dbReference type="EnsemblBacteria" id="ABX32654">
        <property type="protein sequence ID" value="ABX32654"/>
        <property type="gene ID" value="Daci_0007"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_0007"/>
    <dbReference type="eggNOG" id="COG0439">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_000395_3_2_4"/>
    <dbReference type="OMA" id="WQIWGDA"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016874">
        <property type="term" value="F:ligase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006164">
        <property type="term" value="P:purine nucleotide biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011761">
        <property type="entry name" value="ATP-grasp"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005481">
        <property type="entry name" value="BC-like_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011764">
        <property type="entry name" value="Biotin_carboxylation_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005482">
        <property type="entry name" value="Biotin_COase_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005479">
        <property type="entry name" value="CbamoylP_synth_lsu-like_ATP-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016185">
        <property type="entry name" value="PreATP-grasp_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011054">
        <property type="entry name" value="Rudment_hybrid_motif"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02785">
        <property type="entry name" value="Biotin_carb_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00289">
        <property type="entry name" value="Biotin_carb_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02786">
        <property type="entry name" value="CPSase_L_D2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00878">
        <property type="entry name" value="Biotin_carb_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51246">
        <property type="entry name" value="SSF51246"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52440">
        <property type="entry name" value="SSF52440"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50975">
        <property type="entry name" value="ATP_GRASP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50979">
        <property type="entry name" value="BC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00866">
        <property type="entry name" value="CPSASE_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00867">
        <property type="entry name" value="CPSASE_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4 5" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="1" id="KW-0436">Ligase</keyword>
    <keyword evidence="2 5" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="3" id="KW-0658">Purine biosynthesis</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Biotin carboxylation" evidence="7">
        <location>
            <begin position="4"/>
            <end position="449"/>
        </location>
    </feature>
    <feature type="domain" description="ATP-grasp" evidence="6">
        <location>
            <begin position="123"/>
            <end position="320"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022598"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022755"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00409"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="PROSITE" id="PS50975"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="PROSITE" id="PS50979"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="ABX32654.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="465" mass="49654" checksum="24FA29DC9CBC6D56" modified="2008-01-15" version="1">MTAAFDKLLIANRGEIAVRIIRAAKELGLKTVAVYSDADAQSLAVRMADEAVRIGPAHATRSYLSVDAILEAAADSGAGAVHPGYGFLSENAAFAERIEGAGLVFVGPTPHAIRTMGDKAAARAAAMKAGVPTVPGSVGAVTDADTAVAVAKDIGYPIMIKASAGGGGRGIRVAHDEAELRQQFATATAEAQAAFGNGEVYLERFIRQARHIEVQILGDGQRVVHCFERECSLQRRRQKVWEEAPSAAISEATRAALCESALRLAHAVAYRGAGTLEYLYDDDTREFFFIEMNTRIQVEHPVTEMITGIDLVKEMLRIALGQPLRLQQEDIRLTGAAIEVRINAENAAKNFMPSPGLVSQLVVPGGPGVRFDTMLFPGCTVPAYYDSLLGKLIVHDTDRAGALARMRRALDELQVEGIHTTIPLHRALCEDAGVAQAAFHTGFLETWLALNPLADAPAPLAEVTA</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="50" xmlns="http://uniprot.org/uniprot">
    <accession>A9BPF9</accession>
    <name>A9BPF9_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Regulatory protein, FmdB family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Daci_0180</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="4" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX32826.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012202119.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_0180"/>
    <dbReference type="PRIDE" id="A9BPF9"/>
    <dbReference type="EnsemblBacteria" id="ABX32826">
        <property type="protein sequence ID" value="ABX32826"/>
        <property type="gene ID" value="Daci_0180"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_0180"/>
    <dbReference type="eggNOG" id="COG2331">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_136025_2_0_4"/>
    <dbReference type="OMA" id="MDTNERA"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013429">
        <property type="entry name" value="Regulatory_FmdB_Zinc_ribbon"/>
    </dbReference>
    <dbReference type="Pfam" id="PF09723">
        <property type="entry name" value="Zn-ribbon_8"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00834">
        <property type="entry name" value="CxxC_CXXC_SSSS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR02605">
        <property type="entry name" value="CxxC_CxxC_SSSS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="CxxC_CXXC_SSSS" evidence="2">
        <location>
            <begin position="1"/>
            <end position="41"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="52"/>
            <end position="76"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="94"/>
            <end position="117"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="55"/>
            <end position="76"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="SMART" id="SM00834"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ABX32826.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="117" mass="12566" checksum="793C4AF00E526074" modified="2008-01-15" version="1">MPTYDYDCVQCGGFEALRPLRLRDEPAACPGCGTASARVLAAAPRLALMADGTRRAMDTNERARHEPASSRDYDHGYARFKHPAGCGCCGSGRRSATVTAPNGAKSAPSRRPWMISH</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="53" xmlns="http://uniprot.org/uniprot">
    <accession>A9BPG4</accession>
    <name>A9BPG4_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ordered locus">Daci_0185</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="5" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Periplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the UPF0065 (bug) family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX32831.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012202124.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_0185"/>
    <dbReference type="PRIDE" id="A9BPG4"/>
    <dbReference type="EnsemblBacteria" id="ABX32831">
        <property type="protein sequence ID" value="ABX32831"/>
        <property type="gene ID" value="Daci_0185"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_0185"/>
    <dbReference type="eggNOG" id="COG3181">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_045683_0_0_4"/>
    <dbReference type="OMA" id="LICTTAQ"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0042597">
        <property type="term" value="C:periplasmic space"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.190.150">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005064">
        <property type="entry name" value="BUG"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR042100">
        <property type="entry name" value="Bug_dom1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR42928">
        <property type="entry name" value="PTHR42928"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03401">
        <property type="entry name" value="TctC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF017082">
        <property type="entry name" value="YflP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="3">
        <location>
            <begin position="1"/>
            <end position="22"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5002732382" evidence="3">
        <location>
            <begin position="23"/>
            <end position="323"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004418"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00006987"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="ABX32831.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="323" mass="34599" checksum="B0F9D254AEAC92B2" modified="2008-01-15" version="1">MKRILSLFLGGIFLVAASLVHAAWPDRQITLVVPFPAGGGTDVVGRIIAKELAQRLRVNVVVENRPGASGNIGARQVSKARPDGYTLLICTTAQTISGALYTQAGYDVVNDLEAISTINDSPLVLITRPGLQLSSVQDLIELARRSPGKLTYATPGYGSAGHMAAEALSLAADIRMLHIPYQGAAPMMADLVSGQVDIAFDLLITAKQYVSQGKVNRVGVATRERSPLMPDWQTLSEQSPARLGNFNETAWNVLMAPKGTPAAIVNAINAQMKNILADEKVQRKFMELGSIPLWKSVGGTKAFVSDDARKWRKVVSDAGIAKI</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="58" xmlns="http://uniprot.org/uniprot">
    <accession>A9BPU0</accession>
    <name>A9BPU0_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="8">Putative ATP synthase protein I</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="8" type="ordered locus">Daci_0413</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="9" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX33059.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012202351.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_0413"/>
    <dbReference type="PRIDE" id="A9BPU0"/>
    <dbReference type="EnsemblBacteria" id="ABX33059">
        <property type="protein sequence ID" value="ABX33059"/>
        <property type="gene ID" value="Daci_0413"/>
    </dbReference>
    <dbReference type="GeneID" id="60690820"/>
    <dbReference type="KEGG" id="dac:Daci_0413"/>
    <dbReference type="eggNOG" id="COG3312">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_121415_6_0_4"/>
    <dbReference type="OMA" id="GAICWVP"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005598">
        <property type="entry name" value="ATP_synth_I"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03899">
        <property type="entry name" value="ATP-synt_I"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="5 7" id="KW-0472">Membrane</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 7" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="4 7" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="41"/>
            <end position="62"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="68"/>
            <end position="87"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="99"/>
            <end position="123"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="129"/>
            <end position="152"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="6">
        <location>
            <begin position="1"/>
            <end position="29"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="ABX33059.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="160" mass="17308" checksum="2048E97D98578022" modified="2008-01-15" version="1">MKNYAADTDADRELEGEDSDFKPLTSEEAQEWRTRNPQMSVWRFVVVQAVVGVLVALVAWLVTGRAEVGWSAAYGALSVVLPAALFARAVVRKRPGGAAAAMVGIFGWELVKLVLCIAMLAAAPKLVPGLSWLALLAGLVIVMKTYWVALIVRANVRKTD</sequence>
</entry>
<entry dataset="Swiss-Prot" created="2009-04-14" modified="2022-08-03" version="73" xmlns="http://uniprot.org/uniprot">
    <accession>A9BPU6</accession>
    <name>ATPG_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">ATP synthase gamma chain</fullName>
        </recommendedName>
        <alternativeName>
            <fullName evidence="1">ATP synthase F1 sector gamma subunit</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="1">F-ATPase gamma subunit</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="1" type="primary">atpG</name>
        <name type="ordered locus">Daci_0419</name>
    </gene>
    <organism>
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference key="1">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain>DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="1">Produces ATP from ADP in the presence of a proton gradient across the membrane. The gamma chain is believed to be important in regulating ATPase activity and the flow of protons through the CF(0) complex.</text>
    </comment>
    <comment type="subunit">
        <text evidence="1">F-type ATPases have 2 components, CF(1) - the catalytic core - and CF(0) - the membrane proton channel. CF(1) has five subunits: alpha(3), beta(3), gamma(1), delta(1), epsilon(1). CF(0) has three main subunits: a, b and c.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Cell inner membrane</location>
            <topology evidence="1">Peripheral membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="1">Belongs to the ATPase gamma chain family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX33065.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012202356.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A9BPU6"/>
    <dbReference type="SMR" id="A9BPU6"/>
    <dbReference type="STRING" id="398578.Daci_0419"/>
    <dbReference type="PRIDE" id="A9BPU6"/>
    <dbReference type="EnsemblBacteria" id="ABX33065">
        <property type="protein sequence ID" value="ABX33065"/>
        <property type="gene ID" value="Daci_0419"/>
    </dbReference>
    <dbReference type="GeneID" id="60690826"/>
    <dbReference type="KEGG" id="dac:Daci_0419"/>
    <dbReference type="eggNOG" id="COG0224">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_050669_0_1_4"/>
    <dbReference type="OMA" id="MQITSAM"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0045261">
        <property type="term" value="C:proton-transporting ATP synthase complex, catalytic core F(1)"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046933">
        <property type="term" value="F:proton-transporting ATP synthase activity, rotational mechanism"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0042777">
        <property type="term" value="P:proton motive force-driven plasma membrane ATP synthesis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd12151">
        <property type="entry name" value="F1-ATPase_gamma"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00815">
        <property type="entry name" value="ATP_synth_gamma_bact"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035968">
        <property type="entry name" value="ATP_synth_F1_ATPase_gsu"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000131">
        <property type="entry name" value="ATP_synth_F1_gsu"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023632">
        <property type="entry name" value="ATP_synth_F1_gsu_CS"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11693">
        <property type="entry name" value="PTHR11693"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00231">
        <property type="entry name" value="ATP-synt"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00126">
        <property type="entry name" value="ATPASEGAMMA"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52943">
        <property type="entry name" value="SSF52943"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01146">
        <property type="entry name" value="ATPsyn_F1gamma"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00153">
        <property type="entry name" value="ATPASE_GAMMA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword id="KW-0066">ATP synthesis</keyword>
    <keyword id="KW-0997">Cell inner membrane</keyword>
    <keyword id="KW-1003">Cell membrane</keyword>
    <keyword id="KW-0139">CF(1)</keyword>
    <keyword id="KW-0375">Hydrogen ion transport</keyword>
    <keyword id="KW-0406">Ion transport</keyword>
    <keyword id="KW-0472">Membrane</keyword>
    <keyword id="KW-1185">Reference proteome</keyword>
    <keyword id="KW-0813">Transport</keyword>
    <feature type="chain" id="PRO_1000134136" description="ATP synthase gamma chain">
        <location>
            <begin position="1"/>
            <end position="290"/>
        </location>
    </feature>
    <evidence type="ECO:0000255" key="1">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00815"/>
        </source>
    </evidence>
    <sequence length="290" mass="31186" checksum="42C169337F402703" modified="2008-01-15" version="1">MAAGKEIRGKIKSVENTKKITKAMEMVAASKMRKAQERMLAARPYSEKIRNIAVHLGQANPEYVHPFMQVNGDAKTAGVIVVTTDKGLCGGMNTNVLRAVTAKLRELQDQGVSAEAVAIGNKGLGFLNRVGAKVVSHATGLGDTPHLEKLIGPVKVLLDAYAAGKLSAVYLSYTKFINTMKQESVVEQLLPLSSESMQAEKTSGHSWDYIYEPDAQSVIDELLVRYAESLVYQAVAENMASEQSARMVAMKAATDNAGNVISELKLVYNKTRQAAITTELSEIVAGAAAV</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="43" xmlns="http://uniprot.org/uniprot">
    <accession>A9BPV5</accession>
    <name>A9BPV5_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Daci_0428</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="2" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX33074.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012202365.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_0428"/>
    <dbReference type="PRIDE" id="A9BPV5"/>
    <dbReference type="EnsemblBacteria" id="ABX33074">
        <property type="protein sequence ID" value="ABX33074"/>
        <property type="gene ID" value="Daci_0428"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_0428"/>
    <dbReference type="eggNOG" id="COG5639">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_179036_1_0_4"/>
    <dbReference type="OMA" id="FLANDRE"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018733">
        <property type="entry name" value="DUF2274"/>
    </dbReference>
    <dbReference type="Pfam" id="PF10038">
        <property type="entry name" value="DUF2274"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ABX33074.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="81" mass="8495" checksum="DD487E526E4784C4" modified="2008-01-15" version="1">MSTARKLRLGPLPSSGSTKLTFTCPASLKADLDAYAALHAQTYGEAVDATTLIPHMLETFMAGDRGFRKGSRGKAAPPKSG</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="73" xmlns="http://uniprot.org/uniprot">
    <accession>A9BQ41</accession>
    <name>A9BQ41_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="7">Rieske (2Fe-2S) domain protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ordered locus">Daci_0610</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="8" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX33256.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_0610"/>
    <dbReference type="PRIDE" id="A9BQ41"/>
    <dbReference type="EnsemblBacteria" id="ABX33256">
        <property type="protein sequence ID" value="ABX33256"/>
        <property type="gene ID" value="Daci_0610"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_0610"/>
    <dbReference type="eggNOG" id="COG4638">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_026244_3_2_4"/>
    <dbReference type="OMA" id="TRAFTHD"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051537">
        <property type="term" value="F:2 iron, 2 sulfur cluster binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005506">
        <property type="term" value="F:iron ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016491">
        <property type="term" value="F:oxidoreductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.102.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017941">
        <property type="entry name" value="Rieske_2Fe-2S"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036922">
        <property type="entry name" value="Rieske_2Fe-2S_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015879">
        <property type="entry name" value="Ring_hydroxy_dOase_asu_C_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001663">
        <property type="entry name" value="Rng_hydr_dOase-A"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43756">
        <property type="entry name" value="PTHR43756"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00355">
        <property type="entry name" value="Rieske"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00848">
        <property type="entry name" value="Ring_hydroxyl_A"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00090">
        <property type="entry name" value="RNGDIOXGNASE"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50022">
        <property type="entry name" value="SSF50022"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51296">
        <property type="entry name" value="RIESKE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0001">2Fe-2S</keyword>
    <keyword evidence="4" id="KW-0408">Iron</keyword>
    <keyword evidence="5" id="KW-0411">Iron-sulfur</keyword>
    <keyword evidence="2" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="3" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Rieske" evidence="6">
        <location>
            <begin position="28"/>
            <end position="124"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022714"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023002"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023004"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023014"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="PROSITE" id="PS51296"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="ABX33256.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="381" mass="44171" checksum="0D5CF49A89F53906" modified="2008-01-15" version="1">MRSRMHPRYYLSTEIFEQERLKIFRKVWLFAGLKTLLPKNNSFITRKIAGIPIVIQNFHGELRAFENVCLHRSALLQTEPVGCRPLVCAYHAWRYDAQGRVANIPDCDQLYQFGKCELKNLKLREFSLRAVGNILFINLDADPLPLEEQFSSAFLHLLANSSDAYDTEVMVTTWEGRYNWKLAYENLRDANHPRFVHPKTLAKTVNFSPAVDKNQAEESLSELVNTSSYSLRNEMQRFSYGGADAPIPDLKHFGWHDMVERWRYQDVYYNWLAYPNLHIASANGGYSFTLEHHIPIAPDRTQLEIYWFTSRKKQSYASSSQILLAQMHGSKAIVGEDIEIMEQVQSALHIDAPLPTQGAYESMNRLVERWYTTLMNTQHSL</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="65" xmlns="http://uniprot.org/uniprot">
    <accession>A9BR88</accession>
    <name>A9BR88_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="4">Efflux pump membrane transporter</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="5" type="ordered locus">Daci_0500</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="6" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="2 4">Cell inner membrane</location>
            <topology evidence="2 4">Multi-pass membrane protein</topology>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="3 4">Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX33146.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012202432.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_0500"/>
    <dbReference type="PRIDE" id="A9BR88"/>
    <dbReference type="EnsemblBacteria" id="ABX33146">
        <property type="protein sequence ID" value="ABX33146"/>
        <property type="gene ID" value="Daci_0500"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_0500"/>
    <dbReference type="eggNOG" id="COG0841">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_002755_0_1_4"/>
    <dbReference type="OMA" id="FRYNEMG"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015562">
        <property type="term" value="F:efflux transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0042908">
        <property type="term" value="P:xenobiotic transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.2090.10">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027463">
        <property type="entry name" value="AcrB_DN_DC_subdom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001036">
        <property type="entry name" value="Acrflvin-R"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004764">
        <property type="entry name" value="HAE1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR32063">
        <property type="entry name" value="PTHR32063"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00873">
        <property type="entry name" value="ACR_tran"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00702">
        <property type="entry name" value="ACRIFLAVINRP"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF82714">
        <property type="entry name" value="SSF82714"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00915">
        <property type="entry name" value="2A0602"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-0997">Cell inner membrane</keyword>
    <keyword evidence="4" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="4" id="KW-0472">Membrane</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="4" id="KW-1133">Transmembrane helix</keyword>
    <keyword evidence="4" id="KW-0813">Transport</keyword>
    <feature type="transmembrane region" description="Helical" evidence="4">
        <location>
            <begin position="12"/>
            <end position="32"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="4">
        <location>
            <begin position="341"/>
            <end position="360"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="4">
        <location>
            <begin position="367"/>
            <end position="387"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="4">
        <location>
            <begin position="393"/>
            <end position="414"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="4">
        <location>
            <begin position="435"/>
            <end position="461"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="4">
        <location>
            <begin position="473"/>
            <end position="498"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="4">
        <location>
            <begin position="539"/>
            <end position="559"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="4">
        <location>
            <begin position="871"/>
            <end position="889"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="4">
        <location>
            <begin position="896"/>
            <end position="916"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="4">
        <location>
            <begin position="922"/>
            <end position="946"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="4">
        <location>
            <begin position="971"/>
            <end position="991"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="4">
        <location>
            <begin position="1003"/>
            <end position="1025"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00004429"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00010942"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="RuleBase" id="RU364070"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="ABX33146.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="1051" mass="112218" checksum="C0D363F150E83D2F" modified="2008-01-15" version="1"> </sequence>
</entry>
<entry dataset="Swiss-Prot" created="2009-04-14" modified="2022-08-03" version="78" xmlns="http://uniprot.org/uniprot">
    <accession>A9BR95</accession>
    <name>RL1_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">50S ribosomal protein L1</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="1" type="primary">rplA</name>
        <name type="ordered locus">Daci_0507</name>
    </gene>
    <organism>
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference key="1">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain>DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="1">Binds directly to 23S rRNA. The L1 stalk is quite mobile in the ribosome, and is involved in E site tRNA release.</text>
    </comment>
    <comment type="function">
        <text evidence="1">Protein L1 is also a translational repressor protein, it controls the translation of the L11 operon by binding to its mRNA.</text>
    </comment>
    <comment type="subunit">
        <text evidence="1">Part of the 50S ribosomal subunit.</text>
    </comment>
    <comment type="similarity">
        <text evidence="1">Belongs to the universal ribosomal protein uL1 family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX33153.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012202439.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A9BR95"/>
    <dbReference type="SMR" id="A9BR95"/>
    <dbReference type="STRING" id="398578.Daci_0507"/>
    <dbReference type="PRIDE" id="A9BR95"/>
    <dbReference type="EnsemblBacteria" id="ABX33153">
        <property type="protein sequence ID" value="ABX33153"/>
        <property type="gene ID" value="Daci_0507"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_0507"/>
    <dbReference type="eggNOG" id="COG0081">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_062853_0_0_4"/>
    <dbReference type="OMA" id="GWTDVDV"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015934">
        <property type="term" value="C:large ribosomal subunit"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0019843">
        <property type="term" value="F:rRNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003735">
        <property type="term" value="F:structural constituent of ribosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000049">
        <property type="term" value="F:tRNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006417">
        <property type="term" value="P:regulation of translation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006412">
        <property type="term" value="P:translation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd00403">
        <property type="entry name" value="Ribosomal_L1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.790">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01318_B">
        <property type="entry name" value="Ribosomal_L1_B"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005878">
        <property type="entry name" value="Ribosom_L1_bac-type"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002143">
        <property type="entry name" value="Ribosomal_L1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023674">
        <property type="entry name" value="Ribosomal_L1-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR028364">
        <property type="entry name" value="Ribosomal_L1/biogenesis"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016095">
        <property type="entry name" value="Ribosomal_L1_3-a/b-sand"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023673">
        <property type="entry name" value="Ribosomal_L1_CS"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00687">
        <property type="entry name" value="Ribosomal_L1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF002155">
        <property type="entry name" value="Ribosomal_L1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56808">
        <property type="entry name" value="SSF56808"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01169">
        <property type="entry name" value="rplA_bact"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01199">
        <property type="entry name" value="RIBOSOMAL_L1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword id="KW-1185">Reference proteome</keyword>
    <keyword id="KW-0678">Repressor</keyword>
    <keyword id="KW-0687">Ribonucleoprotein</keyword>
    <keyword id="KW-0689">Ribosomal protein</keyword>
    <keyword id="KW-0694">RNA-binding</keyword>
    <keyword id="KW-0699">rRNA-binding</keyword>
    <keyword id="KW-0810">Translation regulation</keyword>
    <keyword id="KW-0820">tRNA-binding</keyword>
    <feature type="chain" id="PRO_1000141389" description="50S ribosomal protein L1">
        <location>
            <begin position="1"/>
            <end position="231"/>
        </location>
    </feature>
    <evidence type="ECO:0000255" key="1">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01318"/>
        </source>
    </evidence>
    <sequence length="231" mass="23889" checksum="845B44CBB5522F44" modified="2008-01-15" version="1">MAKLTKKQKALQGKVESTKLYAFADAVALVKDAATAKFDESIDVAVQLGVDAKKSDQVVRGAVVLPHGTGKVARVAVFAQGAKAEEAKAAGADVVGMDDLAARVKAGDMPFDVVIAAPDAMRVVGTLGQILGPRGLMPNPKVGTVTPDVATAVKNAKAGQVQYRVDKAGIIHATIGRRSFDNEKLQGNLAALIDALNKSKPASSKGLYLRKVAVSSTMGVGVRVDTQTISA</sequence>
</entry>
<entry dataset="Swiss-Prot" created="2009-04-14" modified="2022-08-03" version="73" xmlns="http://uniprot.org/uniprot">
    <accession>A9BR96</accession>
    <name>RL10_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">50S ribosomal protein L10</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="1" type="primary">rplJ</name>
        <name type="ordered locus">Daci_0508</name>
    </gene>
    <organism>
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference key="1">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain>DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="1">Forms part of the ribosomal stalk, playing a central role in the interaction of the ribosome with GTP-bound translation factors.</text>
    </comment>
    <comment type="subunit">
        <text evidence="1">Part of the ribosomal stalk of the 50S ribosomal subunit. The N-terminus interacts with L11 and the large rRNA to form the base of the stalk. The C-terminus forms an elongated spine to which L12 dimers bind in a sequential fashion forming a multimeric L10(L12)X complex.</text>
    </comment>
    <comment type="similarity">
        <text evidence="1">Belongs to the universal ribosomal protein uL10 family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX33154.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012202440.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A9BR96"/>
    <dbReference type="SMR" id="A9BR96"/>
    <dbReference type="STRING" id="398578.Daci_0508"/>
    <dbReference type="PRIDE" id="A9BR96"/>
    <dbReference type="EnsemblBacteria" id="ABX33154">
        <property type="protein sequence ID" value="ABX33154"/>
        <property type="gene ID" value="Daci_0508"/>
    </dbReference>
    <dbReference type="GeneID" id="60690850"/>
    <dbReference type="KEGG" id="dac:Daci_0508"/>
    <dbReference type="eggNOG" id="COG0244">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_092227_0_1_4"/>
    <dbReference type="OMA" id="VRDQKQA"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015934">
        <property type="term" value="C:large ribosomal subunit"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0070180">
        <property type="term" value="F:large ribosomal subunit rRNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003735">
        <property type="term" value="F:structural constituent of ribosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006412">
        <property type="term" value="P:translation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd05797">
        <property type="entry name" value="Ribosomal_L10"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.70.1730">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00362">
        <property type="entry name" value="Ribosomal_L10"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR022973">
        <property type="entry name" value="Ribosomal_L10"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043141">
        <property type="entry name" value="Ribosomal_L10-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002363">
        <property type="entry name" value="Ribosomal_L10_eubac_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001790">
        <property type="entry name" value="Ribosomal_L10P"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11560">
        <property type="entry name" value="PTHR11560"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00466">
        <property type="entry name" value="Ribosomal_L10"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF160369">
        <property type="entry name" value="SSF160369"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01109">
        <property type="entry name" value="RIBOSOMAL_L10"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword id="KW-1185">Reference proteome</keyword>
    <keyword id="KW-0687">Ribonucleoprotein</keyword>
    <keyword id="KW-0689">Ribosomal protein</keyword>
    <keyword id="KW-0694">RNA-binding</keyword>
    <keyword id="KW-0699">rRNA-binding</keyword>
    <feature type="chain" id="PRO_1000120947" description="50S ribosomal protein L10">
        <location>
            <begin position="1"/>
            <end position="175"/>
        </location>
    </feature>
    <evidence type="ECO:0000255" key="1">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00362"/>
        </source>
    </evidence>
    <sequence length="175" mass="18102" checksum="21C56C6E0F4E9F7A" modified="2008-01-15" version="1">MSLNRSEKEAVINEVTSLAAKAQTLVIAEYRGITVADMTKLRSDARSKGVSLSVLKNTLARRAVAGSQFDVVADQMTGPLIYGFSEDAVAAAKVVADFAKTNDKLVIRGGAFAGKALDVNGVKQLANIPSKEVLLAQLCGLLMSPISRTAVVLGALAAKKSEGSAEEPAAEAVAA</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="58" xmlns="http://uniprot.org/uniprot">
    <accession>A9BRC6</accession>
    <name>A9BRC6_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Saccharopine dehydrogenase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Daci_0538</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="4" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX33184.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012202470.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_0538"/>
    <dbReference type="PRIDE" id="A9BRC6"/>
    <dbReference type="EnsemblBacteria" id="ABX33184">
        <property type="protein sequence ID" value="ABX33184"/>
        <property type="gene ID" value="Daci_0538"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_0538"/>
    <dbReference type="eggNOG" id="COG3268">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_031002_0_2_4"/>
    <dbReference type="OMA" id="GPYQLYG"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016491">
        <property type="term" value="F:oxidoreductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036291">
        <property type="entry name" value="NAD(P)-bd_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005097">
        <property type="entry name" value="Sacchrp_dh_NADP"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03435">
        <property type="entry name" value="Sacchrp_dh_NADP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51735">
        <property type="entry name" value="SSF51735"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Sacchrp_dh_NADP" evidence="2">
        <location>
            <begin position="8"/>
            <end position="136"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="287"/>
            <end position="306"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF03435"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ABX33184.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="394" mass="41556" checksum="507F992C8AD8A09C" modified="2008-01-15" version="1">MTKPFDLVVHGATGFTGRLVVEYLLRRYPAGSGLRWAMGGRNAAKLAAVRDELGAPADTPLVVTDTGIPASLQALMEQTRLVLTTVGPYQLYGNELVAACASAGVDYVDLCGEPAWMRQMIDAHEAAARASGARIVFSCGFDSIPFDLGVFMLQREMQARFGQPAQRVRGRVRKMKGTFSGGTAASLKATMAAAAAQPGVLELLRNPFSLTPGFEGPRQPSGSKPMVDEVLGLWVAPFVMAAINTRNVHRSNFLLGHAYGADFVYDEMMVTGAGEKGEALANAVAADKSLGADDGPKPGEGPSREERESGFYDVLFIGTDAAGHSLRVGVKGDRDPGYGSTSKMITEAAVCLLQDAPDTPGGIWTTAPAMGNALIARLKANAGLSFTVEEQNPS</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="59" xmlns="http://uniprot.org/uniprot">
    <accession>A9BRH1</accession>
    <name>A9BRH1_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">GCN5-related N-acetyltransferase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_0686</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX33332.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012202618.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="PRIDE" id="A9BRH1"/>
    <dbReference type="EnsemblBacteria" id="ABX33332">
        <property type="protein sequence ID" value="ABX33332"/>
        <property type="gene ID" value="Daci_0686"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_0686"/>
    <dbReference type="eggNOG" id="COG0456">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_108859_2_1_4"/>
    <dbReference type="OMA" id="KCGFRIQ"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008080">
        <property type="term" value="F:N-acetyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016181">
        <property type="entry name" value="Acyl_CoA_acyltransferase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000182">
        <property type="entry name" value="GNAT_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00583">
        <property type="entry name" value="Acetyltransf_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55729">
        <property type="entry name" value="SSF55729"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51186">
        <property type="entry name" value="GNAT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="N-acetyltransferase" evidence="1">
        <location>
            <begin position="65"/>
            <end position="165"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS51186"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX33332.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="183" mass="20312" checksum="D28E89F1DA4B2484" modified="2008-01-15" version="1">MTAPSVSLAPWHIEPLNPAEAPWPLLLSADPSREKVRGYLAGSTCFAARESFQREGQPPRPGGRGEVLGMCVLVPLRASGDEASGPPAWELMNIAVAESLHHRGLGTALLRRAIEWARSQRAPRIEVGTGSFGDQLVFYQRAGFRVTGIDRDFFLRHYTTQLWERGVQHRDMLRLTLELGTGR</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="98" xmlns="http://uniprot.org/uniprot">
    <accession>A9BRH2</accession>
    <name>A9BRH2_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="9">Ferredoxin</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="9" type="ordered locus">Daci_0687</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="9 10" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="10" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the cytochrome P450 family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX33333.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012202619.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="SMR" id="A9BRH2"/>
    <dbReference type="STRING" id="398578.Daci_0687"/>
    <dbReference type="PRIDE" id="A9BRH2"/>
    <dbReference type="EnsemblBacteria" id="ABX33333">
        <property type="protein sequence ID" value="ABX33333"/>
        <property type="gene ID" value="Daci_0687"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_0687"/>
    <dbReference type="eggNOG" id="COG1018">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="eggNOG" id="COG2124">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_020412_0_0_4"/>
    <dbReference type="OMA" id="EDEPAHM"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051537">
        <property type="term" value="F:2 iron, 2 sulfur cluster binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0020037">
        <property type="term" value="F:heme binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005506">
        <property type="term" value="F:iron ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004497">
        <property type="term" value="F:monooxygenase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016705">
        <property type="term" value="F:oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd00207">
        <property type="entry name" value="fer2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.630.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.10.20.30">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.80">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036010">
        <property type="entry name" value="2Fe-2S_ferredoxin-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001041">
        <property type="entry name" value="2Fe-2S_ferredoxin-type"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006058">
        <property type="entry name" value="2Fe2S_fd_BS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012675">
        <property type="entry name" value="Beta-grasp_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008333">
        <property type="entry name" value="Cbr1-like_FAD-bd_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001128">
        <property type="entry name" value="Cyt_P450"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002397">
        <property type="entry name" value="Cyt_P450_B"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017972">
        <property type="entry name" value="Cyt_P450_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036396">
        <property type="entry name" value="Cyt_P450_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017927">
        <property type="entry name" value="FAD-bd_FR_type"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR039261">
        <property type="entry name" value="FNR_nucleotide-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017938">
        <property type="entry name" value="Riboflavin_synthase-like_b-brl"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00970">
        <property type="entry name" value="FAD_binding_6"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00111">
        <property type="entry name" value="Fer2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00067">
        <property type="entry name" value="p450"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00359">
        <property type="entry name" value="BP450"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48264">
        <property type="entry name" value="SSF48264"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52343">
        <property type="entry name" value="SSF52343"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54292">
        <property type="entry name" value="SSF54292"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF63380">
        <property type="entry name" value="SSF63380"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00197">
        <property type="entry name" value="2FE2S_FER_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51085">
        <property type="entry name" value="2FE2S_FER_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00086">
        <property type="entry name" value="CYTOCHROME_P450"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51384">
        <property type="entry name" value="FAD_FR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2" id="KW-0001">2Fe-2S</keyword>
    <keyword evidence="4" id="KW-0408">Iron</keyword>
    <keyword evidence="5" id="KW-0411">Iron-sulfur</keyword>
    <keyword evidence="3" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="FAD-binding FR-type" evidence="8">
        <location>
            <begin position="478"/>
            <end position="581"/>
        </location>
    </feature>
    <feature type="domain" description="2Fe-2S ferredoxin-type" evidence="7">
        <location>
            <begin position="709"/>
            <end position="794"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="6">
        <location>
            <begin position="1"/>
            <end position="40"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00010617"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022714"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023004"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023014"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="PROSITE" id="PS51085"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="PROSITE" id="PS51384"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="ABX33333.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="794" mass="87335" checksum="6EA7C90219666EBD" modified="2008-01-15" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="72" xmlns="http://uniprot.org/uniprot">
    <accession>A9BRN9</accession>
    <name>A9BRN9_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="6">Aldehyde Dehydrogenase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ordered locus">Daci_0960</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="7" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="4">Belongs to the aldehyde dehydrogenase family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX33606.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012202892.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_0960"/>
    <dbReference type="PRIDE" id="A9BRN9"/>
    <dbReference type="EnsemblBacteria" id="ABX33606">
        <property type="protein sequence ID" value="ABX33606"/>
        <property type="gene ID" value="Daci_0960"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_0960"/>
    <dbReference type="eggNOG" id="COG1012">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_005391_0_0_4"/>
    <dbReference type="OMA" id="KARLHAH"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016620">
        <property type="term" value="F:oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.309.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.605.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016161">
        <property type="entry name" value="Ald_DH/histidinol_DH"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016163">
        <property type="entry name" value="Ald_DH_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016160">
        <property type="entry name" value="Ald_DH_CS_CYS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029510">
        <property type="entry name" value="Ald_DH_CS_GLU"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016162">
        <property type="entry name" value="Ald_DH_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015590">
        <property type="entry name" value="Aldehyde_DH_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00171">
        <property type="entry name" value="Aldedh"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53720">
        <property type="entry name" value="SSF53720"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00070">
        <property type="entry name" value="ALDEHYDE_DEHYDR_CYS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00687">
        <property type="entry name" value="ALDEHYDE_DEHYDR_GLU"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="1 4" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Aldedh" evidence="5">
        <location>
            <begin position="22"/>
            <end position="477"/>
        </location>
    </feature>
    <feature type="active site" evidence="2">
        <location>
            <position position="251"/>
        </location>
    </feature>
    <feature type="active site" evidence="3">
        <location>
            <position position="285"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023002"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU10007"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU10008"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="RuleBase" id="RU003345"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="Pfam" id="PF00171"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="ABX33606.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="491" mass="53049" checksum="39EBC69AD90DA285" modified="2008-01-15" version="1">MSNLELLPINIAGEWRLGGGGESTTLYPATGEVVGRLRAPSLEDVEEAIQKADHAFRTSGWAQKKPHERAAVLHRVAQLIRERAEPLAQLQRLDNGKPIKETRMLVASAAATFQFFAAACETMEETITPSRGDFMTMSVYEPMGVVAAITPWNSPIASEAQKLAPALAAGNAVVVKPAEATPLLALELARICEEAGVPKGLVSVLPGRGSVIGDAITKHPLVKRVSFTGGTSTGKHIAHIAADKMMPVSLELGGKSATMVLADADIDHAVNGVLYGIFSSSGESCIAGSRLFVARSLHAEFMQRLTAKAAALQVGDPADERTQMGPLITAKHRESIESYVALGLSEGGRLLTGGQRPEGAQFERGYYYRPTIIDGVKNDWQICQQEIFGPVLVAMPFDNEDDLLAQANDSVYALAAGIWTRDYKSAWRIGRAVQAGTVWINTYKQFSISTPFGGWRDSGLGREKGRLGIQQYMEQKSMYWGLNDQPLAWAN</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="43" xmlns="http://uniprot.org/uniprot">
    <accession>A9BRS0</accession>
    <name>A9BRS0_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_0991</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX33637.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012202923.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_0991"/>
    <dbReference type="PRIDE" id="A9BRS0"/>
    <dbReference type="EnsemblBacteria" id="ABX33637">
        <property type="protein sequence ID" value="ABX33637"/>
        <property type="gene ID" value="Daci_0991"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_0991"/>
    <dbReference type="eggNOG" id="ENOG50314AU">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_625303_0_0_4"/>
    <dbReference type="OMA" id="MAWGKLL"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="20"/>
            <end position="38"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="44"/>
            <end position="67"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="98"/>
            <end position="120"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="126"/>
            <end position="147"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="168"/>
            <end position="185"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="210"/>
            <end position="230"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="242"/>
            <end position="260"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="272"/>
            <end position="290"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="319"/>
            <end position="339"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="351"/>
            <end position="375"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="382"/>
            <end position="406"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="426"/>
            <end position="446"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX33637.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="462" mass="50038" checksum="970668ECBC813A7F" modified="2008-01-15" version="1">MTHNPEFQRQLWLNWRPAQLGWSLLLTALLLATPMVLVQPEDRLHALLVAALIGMWIAAAGLGSVLAGRGLNEEAHQHTWDWQRLSALTPWQMAWGKLLGAPLPAWLYMLWCALAVLATSTGQPGGLAWGVHAVLQAVLWGLALQAWSMHSVLMGWGPKEQPARRIRFVLVPLLFVMVLPGPILGRLTEQLGREEGRPVLWWSVPLHGRGAIYLFGAIALGLGLLALWRLLCTRLDVRTLPWAWPLGLCVAGLAFGGMHLDAMQLQGPGPASFFAWTTGLALAGTAYVCLHGMDEGLRSWRQVQWCVLQGRWRGALEALPLWPVSWLLAVLACALWLLWPAGGQPIVPGAAQLAALATAQLLRDAALATGFSLLAGRIKSPLAAFAVTWLLVNIVLPLLAFGLAGADAAVLAQPLAAGLTKPVTSGMWLSLAAQVGLALAWLAHVFRQRVLGFAREQHTAVR</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="64" xmlns="http://uniprot.org/uniprot">
    <accession>A9BRS7</accession>
    <name>A9BRS7_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Intracellular protease, PfpI family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Daci_0998</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="4" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the peptidase C56 family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX33644.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012202930.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_0998"/>
    <dbReference type="MEROPS" id="C56.A06"/>
    <dbReference type="PRIDE" id="A9BRS7"/>
    <dbReference type="EnsemblBacteria" id="ABX33644">
        <property type="protein sequence ID" value="ABX33644"/>
        <property type="gene ID" value="Daci_0998"/>
    </dbReference>
    <dbReference type="GeneID" id="60685560"/>
    <dbReference type="KEGG" id="dac:Daci_0998"/>
    <dbReference type="eggNOG" id="COG0693">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_000445_44_4_4"/>
    <dbReference type="OMA" id="YAWMREF"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008233">
        <property type="term" value="F:peptidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006508">
        <property type="term" value="P:proteolysis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.880">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006286">
        <property type="entry name" value="C56_PfpI"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029062">
        <property type="entry name" value="Class_I_gatase-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002818">
        <property type="entry name" value="DJ-1/PfpI"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR42733">
        <property type="entry name" value="PTHR42733"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01965">
        <property type="entry name" value="DJ-1_PfpI"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52317">
        <property type="entry name" value="SSF52317"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01382">
        <property type="entry name" value="PfpI"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51276">
        <property type="entry name" value="PEPTIDASE_C56_PFPI"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="3" id="KW-0645">Protease</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="DJ-1_PfpI" evidence="2">
        <location>
            <begin position="4"/>
            <end position="184"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00008542"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF01965"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ABX33644.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="194" mass="20819" checksum="1B814E6B7CF46C0D" modified="2008-01-15" version="1">MAGKKILMICGDYCEDYETMVPFQALQAVGHTVHAVCPDKKAGEHIKTAIHDFEGAQTYSEKPGHNFTLNASFADIKPEQYDALVIPGGRGPEYLRNYDAVRAAVRHFFDNNKPVAAVCHGAQLLAGAGVLKGRTCSAYPACRAEVELAGGTYADIGVDQAHTEGNLVSAPAWPAHPAWIAQFLTLLGTRISHG</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="62" xmlns="http://uniprot.org/uniprot">
    <accession>A9BRX8</accession>
    <name>A9BRX8_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="7">Anion transporter</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ordered locus">Daci_1050</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="8" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the SLC13A/DASS transporter (TC 2.A.47) family. DIT1 subfamily.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX33695.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012202981.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_1050"/>
    <dbReference type="PRIDE" id="A9BRX8"/>
    <dbReference type="EnsemblBacteria" id="ABX33695">
        <property type="protein sequence ID" value="ABX33695"/>
        <property type="gene ID" value="Daci_1050"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_1050"/>
    <dbReference type="eggNOG" id="COG0471">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_005170_7_3_4"/>
    <dbReference type="OMA" id="AMAHISA"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0022857">
        <property type="term" value="F:transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR030676">
        <property type="entry name" value="CitT-rel"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001898">
        <property type="entry name" value="SLC13A/DASS"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR42826">
        <property type="entry name" value="PTHR42826"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00939">
        <property type="entry name" value="Na_sulph_symp"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF002457">
        <property type="entry name" value="DASS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00785">
        <property type="entry name" value="dass"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5 6" id="KW-0472">Membrane</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 6" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="4 6" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="20"/>
            <end position="38"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="50"/>
            <end position="83"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="95"/>
            <end position="114"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="238"/>
            <end position="260"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="291"/>
            <end position="315"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="321"/>
            <end position="338"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="350"/>
            <end position="375"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="387"/>
            <end position="406"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="413"/>
            <end position="430"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="436"/>
            <end position="454"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="475"/>
            <end position="495"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00007349"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="ABX33695.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="501" mass="53667" checksum="C1DFC5BAA67B76F2" modified="2008-01-15" version="1">MLEKIASLFHYFKAAVPFRLVPALIATAVLFGLLLMPVPEGLTPKGWQLVAIFLTTIVAIILKVMPIGVMALMAIVIVSLSQVTSGSSKGAITDALSSFSSPLIWLIVVAILISRGLKKTGLGSRIGLMFIALLGKRTIGIGYGLAICELVLAPFTPSNTARGGGIVHPIMKSIANAFDSDPAKGTQGKVGTYLALVNYHANPITSAMFLTATAPNPLVVDFVAKATGQALHLSWTTWALYMLLPGLLCLLLMPLVIYLLSPPELKATPNAVEYARSEMARMGPLSGKERVMLGTFGLMLLLWANVPQMLFGPAFVLDPTVVAFLGLFVLIITGTIDWDDVLSEKSAWDTLVWFGALVMLAEQLNKLGVVSWFAVGMKNAIVASGLDWLPVAAILVGVFVFSHYLFASTTAHISAMMLAFLTVGAQLIPADYVVPFMLMMTAGSAIMMTLTHYATGTSPIIFGSGYVTLGNWWRVGAAMCVIELLIFAVVGSVWWKLLGLW</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="51" xmlns="http://uniprot.org/uniprot">
    <accession>A9BRZ2</accession>
    <name>A9BRZ2_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_0756</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX33402.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012202688.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_0756"/>
    <dbReference type="ESTHER" id="delas-a9brz2">
        <property type="family name" value="Duf_3141"/>
    </dbReference>
    <dbReference type="PRIDE" id="A9BRZ2"/>
    <dbReference type="EnsemblBacteria" id="ABX33402">
        <property type="protein sequence ID" value="ABX33402"/>
        <property type="gene ID" value="Daci_0756"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_0756"/>
    <dbReference type="eggNOG" id="COG3170">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_014618_0_0_4"/>
    <dbReference type="OMA" id="GHPCYFI"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.1820">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029058">
        <property type="entry name" value="AB_hydrolase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR024501">
        <property type="entry name" value="DUF3141"/>
    </dbReference>
    <dbReference type="Pfam" id="PF11339">
        <property type="entry name" value="DUF3141"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53474">
        <property type="entry name" value="SSF53474"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="575"/>
            <end position="595"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="733"/>
            <end position="765"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="780"/>
            <end position="819"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Pro residues" evidence="1">
        <location>
            <begin position="780"/>
            <end position="797"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX33402.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="819" mass="89977" checksum="0C606DF0D845A9B3" modified="2008-01-15" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="42" xmlns="http://uniprot.org/uniprot">
    <accession>A9BS63</accession>
    <name>A9BS63_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_0827</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX33473.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012202759.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_0827"/>
    <dbReference type="PRIDE" id="A9BS63"/>
    <dbReference type="EnsemblBacteria" id="ABX33473">
        <property type="protein sequence ID" value="ABX33473"/>
        <property type="gene ID" value="Daci_0827"/>
    </dbReference>
    <dbReference type="GeneID" id="60685389"/>
    <dbReference type="KEGG" id="dac:Daci_0827"/>
    <dbReference type="eggNOG" id="ENOG502Z9VB">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_092687_0_0_4"/>
    <dbReference type="OMA" id="HHWDVLA"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="1">
        <location>
            <begin position="1"/>
            <end position="25"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5002735743" evidence="1">
        <location>
            <begin position="26"/>
            <end position="179"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX33473.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="179" mass="19411" checksum="2BA7D92A52993B52" modified="2008-01-15" version="1">MRSFKSAGGLALAGLCLALAGCVNAPMTSYFEATAQPKIGAAGHWDSVANDVVAKTLETLQKTGIERTTPVHVALPAEPSQFDKGFRELIITKLVQSGVTVMQQPAQAQLQVSYGAQVVRHGKRLPNPELVLTTTVVRNNQYLARKTDVYYLEKSDAVLFTAEDERPEFPAKNLKVVGQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="55" xmlns="http://uniprot.org/uniprot">
    <accession>A9BSD0</accession>
    <name>A9BSD0_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Propionyl-CoA carboxylase</fullName>
            <ecNumber evidence="3">6.4.1.3</ecNumber>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Daci_1099</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="4" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EC" id="6.4.1.3" evidence="3"/>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX33744.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012203030.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_1099"/>
    <dbReference type="PRIDE" id="A9BSD0"/>
    <dbReference type="EnsemblBacteria" id="ABX33744">
        <property type="protein sequence ID" value="ABX33744"/>
        <property type="gene ID" value="Daci_1099"/>
    </dbReference>
    <dbReference type="GeneID" id="60685662"/>
    <dbReference type="KEGG" id="dac:Daci_1099"/>
    <dbReference type="eggNOG" id="COG4799">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_018822_6_1_4"/>
    <dbReference type="OMA" id="HFIMVAD"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004658">
        <property type="term" value="F:propionyl-CoA carboxylase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR034733">
        <property type="entry name" value="AcCoA_carboxyl"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029045">
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    </dbReference>
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        <property type="match status" value="1"/>
    </dbReference>
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        <property type="entry name" value="SSF52096"/>
        <property type="match status" value="2"/>
    </dbReference>
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        <property type="entry name" value="COA_CT_CTER"/>
        <property type="match status" value="1"/>
    </dbReference>
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        <property type="entry name" value="COA_CT_NTER"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-0436">Ligase</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
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        <location>
            <begin position="1"/>
            <end position="263"/>
        </location>
    </feature>
    <feature type="domain" description="CoA carboxyltransferase C-terminal" evidence="2">
        <location>
            <begin position="266"/>
            <end position="505"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS50980"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS50989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ABX33744.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="515" mass="55926" checksum="7C4720D4D8753FAB" modified="2008-01-15" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="47" xmlns="http://uniprot.org/uniprot">
    <accession>A9BSN0</accession>
    <name>A9BSN0_DELAS</name>
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        <submittedName>
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        </submittedName>
    </protein>
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            <taxon>Betaproteobacteria</taxon>
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            <taxon>Comamonadaceae</taxon>
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                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
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            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
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        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
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    </dbReference>
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    <dbReference type="EnsemblBacteria" id="ABX34035">
        <property type="protein sequence ID" value="ABX34035"/>
        <property type="gene ID" value="Daci_1391"/>
    </dbReference>
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    <dbReference type="eggNOG" id="ENOG5032UE4">
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    </dbReference>
    <dbReference type="HOGENOM" id="CLU_139747_3_0_4"/>
    <dbReference type="OMA" id="HHEYVEE"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR024447">
        <property type="entry name" value="YXWGXW_rpt"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12779">
        <property type="entry name" value="WXXGXW"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ABX34035.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="119" mass="12886" checksum="8333201D02BCF6AB" modified="2008-01-15" version="1">MKSVSIQTPGRRLVPALVLAAATVALTGCVVAPAYPVGPSGEVVYAPMAPPPLQTEVIPVAPSPVHVWIGGSWGWGGGRYAWRPGYWAAPPHPGYAWRPHGWDHGPRGWYQRPGGWYRR</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2021-09-29" version="60" xmlns="http://uniprot.org/uniprot">
    <accession>A9BSP8</accession>
    <name>A9BSP8_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Integrase, catalytic region</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Daci_1409</name>
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    <organism evidence="1 2">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
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    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
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            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="2" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX34053.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_1409"/>
    <dbReference type="EnsemblBacteria" id="ABX34053">
        <property type="protein sequence ID" value="ABX34053"/>
        <property type="gene ID" value="Daci_1409"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_1409"/>
    <dbReference type="eggNOG" id="COG2801">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_027402_15_4_4"/>
    <dbReference type="OMA" id="LAHCANE"/>
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    </dbReference>
    <dbReference type="GO" id="GO:0003676">
        <property type="term" value="F:nucleic acid binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
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    </dbReference>
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        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009057">
        <property type="entry name" value="Homeobox-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012337">
        <property type="entry name" value="RNaseH-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036397">
        <property type="entry name" value="RNaseH_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46689">
        <property type="entry name" value="SSF46689"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53098">
        <property type="entry name" value="SSF53098"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ABX34053.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="209" mass="24310" checksum="5AF652A2B467F0C8" modified="2008-01-15" version="1">MPWKECAPMDEKLLFIADHLRGGAPLSELCRRYGISRKTAYKWVERYRQLGMDGLQERSRRPHGNNQAISYAQRRAIIELRTQQRSQMGPKKLHALLLQRWGPQETPSKTTIYNVLKAEGLVCSRRVRRRSVPTAQPLRTSKQPNGVWSADYKGQFKTADGHWCYPLTIMDHASRYLLAVHVYDSPNYEDAKRSFERKRSSNYVFPQSA</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="38" xmlns="http://uniprot.org/uniprot">
    <accession>A9BSR1</accession>
    <name>A9BSR1_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">LigA</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_1422</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX34066.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_1422"/>
    <dbReference type="PRIDE" id="A9BSR1"/>
    <dbReference type="EnsemblBacteria" id="ABX34066">
        <property type="protein sequence ID" value="ABX34066"/>
        <property type="gene ID" value="Daci_1422"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_1422"/>
    <dbReference type="HOGENOM" id="CLU_511653_0_0_4"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="18"/>
            <end position="41"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="124"/>
            <end position="159"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="192"/>
            <end position="251"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="302"/>
            <end position="339"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="361"/>
            <end position="403"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="422"/>
            <end position="468"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="480"/>
            <end position="532"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic residues" evidence="1">
        <location>
            <begin position="200"/>
            <end position="214"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="216"/>
            <end position="236"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic residues" evidence="1">
        <location>
            <begin position="377"/>
            <end position="395"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic residues" evidence="1">
        <location>
            <begin position="441"/>
            <end position="463"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic residues" evidence="1">
        <location>
            <begin position="484"/>
            <end position="498"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX34066.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="532" mass="59656" checksum="6134DFA7070F63ED" modified="2008-01-15" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2020-10-07" version="29" xmlns="http://uniprot.org/uniprot">
    <accession>A9BSR4</accession>
    <name>A9BSR4_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Daci_1425</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
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                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
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            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="2" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX34069.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="ABX34069">
        <property type="protein sequence ID" value="ABX34069"/>
        <property type="gene ID" value="Daci_1425"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_1425"/>
    <dbReference type="HOGENOM" id="CLU_1746647_0_0_4"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ABX34069.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="149" mass="17097" checksum="DFECD9C8230B6614" modified="2008-01-15" version="1">MNYELLLGYQRNLIDASLDDISGVSILSGWCGGQYGANQDKWRNAVSRFVFRNYSSGLIGCVNPDIYKIKDIVKFSKKYETLEVDVNEESLVLWNGVIYSSTKKLDELIERYGLGDWRYLDFDVNHDFMSEIISIYKDFGSDVSDISLC</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="32" xmlns="http://uniprot.org/uniprot">
    <accession>A9BSY8</accession>
    <name>A9BSY8_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Daci_1705</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="2" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX34348.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="PRIDE" id="A9BSY8"/>
    <dbReference type="EnsemblBacteria" id="ABX34348">
        <property type="protein sequence ID" value="ABX34348"/>
        <property type="gene ID" value="Daci_1705"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_1705"/>
    <dbReference type="HOGENOM" id="CLU_102857_0_0_4"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009492">
        <property type="entry name" value="TniQ"/>
    </dbReference>
    <dbReference type="Pfam" id="PF06527">
        <property type="entry name" value="TniQ"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ABX34348.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="193" mass="22046" checksum="EF755ADFA77D7F7E" modified="2008-01-15" version="1">MPASSFALAEHIFAGLRSLDPLGHNFLLWTECRKARYRYCPLCLEEPGCKFFPLHWRFKAWRWCPVHDCLLEDVCAHCSAPVTLPDTMINAGPDKQGVATLQYCLQCANPLSSGLGKIFHPVADDLLTSAERVFLMNGRAVLAALLHRSVYSDQSDKRRPLAYLETMRKFGVLPHEYFEIPSSLLERRFSQRF</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="57" xmlns="http://uniprot.org/uniprot">
    <accession>A9BT28</accession>
    <name>A9BT28_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">GCN5-related N-acetyltransferase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_1745</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX34388.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012203673.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="PRIDE" id="A9BT28"/>
    <dbReference type="EnsemblBacteria" id="ABX34388">
        <property type="protein sequence ID" value="ABX34388"/>
        <property type="gene ID" value="Daci_1745"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_1745"/>
    <dbReference type="eggNOG" id="COG0456">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_383030_0_0_4"/>
    <dbReference type="OMA" id="LYQQRHY"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016740">
        <property type="term" value="F:transferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016181">
        <property type="entry name" value="Acyl_CoA_acyltransferase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002740">
        <property type="entry name" value="EVE_domain"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015947">
        <property type="entry name" value="PUA-like_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01878">
        <property type="entry name" value="EVE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55729">
        <property type="entry name" value="SSF55729"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF88697">
        <property type="entry name" value="SSF88697"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="EVE" evidence="1">
        <location>
            <begin position="584"/>
            <end position="689"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF01878"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX34388.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="723" mass="80091" checksum="4D01EAD55F66CB2B" modified="2008-01-15" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="81" xmlns="http://uniprot.org/uniprot">
    <accession>A9BT38</accession>
    <name>A9BT38_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="6">Transcriptional regulator, IclR family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ordered locus">Daci_1756</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="7" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX34398.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012203683.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_1756"/>
    <dbReference type="PRIDE" id="A9BT38"/>
    <dbReference type="EnsemblBacteria" id="ABX34398">
        <property type="protein sequence ID" value="ABX34398"/>
        <property type="gene ID" value="Daci_1756"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_1756"/>
    <dbReference type="eggNOG" id="COG1414">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_062618_0_0_4"/>
    <dbReference type="OMA" id="DEMIYLE"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006355">
        <property type="term" value="P:regulation of transcription, DNA-templated"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.450.40">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029016">
        <property type="entry name" value="GAF-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014757">
        <property type="entry name" value="Tscrpt_reg_IclR_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005471">
        <property type="entry name" value="Tscrpt_reg_IclR_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036390">
        <property type="entry name" value="WH_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF09339">
        <property type="entry name" value="HTH_IclR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01614">
        <property type="entry name" value="IclR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00346">
        <property type="entry name" value="HTH_ICLR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46785">
        <property type="entry name" value="SSF46785"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51077">
        <property type="entry name" value="HTH_ICLR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51078">
        <property type="entry name" value="ICLR_ED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0804">Transcription</keyword>
    <keyword evidence="1" id="KW-0805">Transcription regulation</keyword>
    <feature type="domain" description="HTH iclR-type" evidence="4">
        <location>
            <begin position="19"/>
            <end position="81"/>
        </location>
    </feature>
    <feature type="domain" description="IclR-ED" evidence="5">
        <location>
            <begin position="82"/>
            <end position="261"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="3">
        <location>
            <begin position="1"/>
            <end position="22"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023015"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023163"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="PROSITE" id="PS51077"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="PROSITE" id="PS51078"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="ABX34398.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="262" mass="28699" checksum="72F323F3DE465686" modified="2008-01-15" version="1">MTNRRSPILHDKPGQSPSNRSLERGVEILRAFRPGSELLGNSDLAERTGLSKATVTRLTQTLVGCGMLQADHPSRAFRLAPAVLSLAHAMRTGSTVLSIAAPLMRTLAETRRINVGLACPDRDEMVYLESIRYNRRIVLRHVVSGQRVPMELTSLGRAYLAAAPSARRKALLDSFRLKRGAQWPALEQQIQAAIKSVKSQGFCAASWQPEVVALATPLVTPDAIYVLNCSVSTTEPLPTIVQELHPALLQLGRQIESLLEKL</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="61" xmlns="http://uniprot.org/uniprot">
    <accession>A9BT94</accession>
    <name>A9BT94_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">FAD dependent oxidoreductase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_2019</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX34659.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012203944.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_2019"/>
    <dbReference type="PRIDE" id="A9BT94"/>
    <dbReference type="EnsemblBacteria" id="ABX34659">
        <property type="protein sequence ID" value="ABX34659"/>
        <property type="gene ID" value="Daci_2019"/>
    </dbReference>
    <dbReference type="GeneID" id="60686417"/>
    <dbReference type="KEGG" id="dac:Daci_2019"/>
    <dbReference type="eggNOG" id="COG0665">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_007884_3_3_4"/>
    <dbReference type="OMA" id="EQDAYLY"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016491">
        <property type="term" value="F:oxidoreductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.50.50.60">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006076">
        <property type="entry name" value="FAD-dep_OxRdtase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036188">
        <property type="entry name" value="FAD/NAD-bd_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01266">
        <property type="entry name" value="DAO"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51905">
        <property type="entry name" value="SSF51905"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="DAO" evidence="1">
        <location>
            <begin position="58"/>
            <end position="419"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF01266"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX34659.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="473" mass="52812" checksum="2FE874C62A18E1D4" modified="2008-01-15" version="1">MKAEDIRPSHLRPYDPQYDPLVAANPGHGTGYAPTYWVGTAGRPPDDDGPVTGDMDVDVAIVGSGFTGLATALFLAREHGIRAVVLDANQTAWGCTSRNGGQGQNASGRLYRSQWIARWGKDVALKLDAEIREGFQTFKDLVAEFPECEPQPGGHLYIAHREKKLDFLRNETQIMREVFGYDARMLSPEELRRDYVNDADSHGAMHEPDGIGVHPLKLAFGYLRKARELGVKVHPASPVLGVETRNGVHHLRTPGGTVRARAVGFATGGYTSNALHGSLRSKIMPILSNSLVTRPLTEQELEATGFKTTQVITDTRTLRFYYRRLPDNRVQIGSRSAVTGADAPNPIHMAKLVDGLHRKFPALKGITIDYSWWGWVDVSHDMMPRVFQPDPAQSIFYAVGYGGNGVSFSAHAGRRMAERIAGRQSKTFELPIYNSELEYPNVFNMVRSPAFAPFRRLGQRFLYHWYYMRDEKL</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="75" xmlns="http://uniprot.org/uniprot">
    <accession>A9BTN0</accession>
    <name>A9BTN0_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="5">D-malate dehydrogenase (decarboxylating)</fullName>
            <ecNumber evidence="5">1.1.1.83</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="7" type="ordered locus">Daci_2360</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="8" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>(R)-malate + NAD(+) = CO2 + NADH + pyruvate</text>
            <dbReference type="Rhea" id="RHEA:18365"/>
            <dbReference type="ChEBI" id="CHEBI:15361"/>
            <dbReference type="ChEBI" id="CHEBI:15588"/>
            <dbReference type="ChEBI" id="CHEBI:16526"/>
            <dbReference type="ChEBI" id="CHEBI:57540"/>
            <dbReference type="ChEBI" id="CHEBI:57945"/>
            <dbReference type="EC" id="1.1.1.83"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="3">
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </cofactor>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="2">
            <name>Mn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29035"/>
        </cofactor>
    </comment>
    <comment type="similarity">
        <text evidence="4">Belongs to the isocitrate and isopropylmalate dehydrogenases family.</text>
    </comment>
    <dbReference type="EC" id="1.1.1.83" evidence="5"/>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX34998.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012204280.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_2360"/>
    <dbReference type="PRIDE" id="A9BTN0"/>
    <dbReference type="EnsemblBacteria" id="ABX34998">
        <property type="protein sequence ID" value="ABX34998"/>
        <property type="gene ID" value="Daci_2360"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_2360"/>
    <dbReference type="eggNOG" id="COG0473">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_031953_0_1_4"/>
    <dbReference type="OMA" id="KLFRQPS"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046553">
        <property type="term" value="F:D-malate dehydrogenase (decarboxylating) activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016829">
        <property type="term" value="F:lyase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000287">
        <property type="term" value="F:magnesium ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051287">
        <property type="term" value="F:NAD binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019818">
        <property type="entry name" value="IsoCit/isopropylmalate_DH_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR024084">
        <property type="entry name" value="IsoPropMal-DH-like_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011829">
        <property type="entry name" value="TTC_DH"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00180">
        <property type="entry name" value="Iso_dh"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM01329">
        <property type="entry name" value="Iso_dh"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR02089">
        <property type="entry name" value="TTC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00470">
        <property type="entry name" value="IDH_IMDH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="7" id="KW-0456">Lyase</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Iso_dh" evidence="6">
        <location>
            <begin position="6"/>
            <end position="355"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001361"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00001936"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00001946"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00007769"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00013126"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="SMART" id="SM01329"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="ABX34998.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="362" mass="39651" checksum="0A16BBF4FBCE5F30" modified="2008-01-15" version="1">MQDTFKIAVIAGDGIGKEVMPEGLRTLEAAASRFAIKLEFHHFDWAHCDYYLAHGKMMPDDWKAQLCGMDAIFFGAVGWPATVPDHVSLWGSLLKFRREFDQYINLRPVRLFEGVPCPLAGRKPGDIDYYVVRENTEGEYTSLGGIMYEGTDREIVIQESVYSRKGAERLLKYAFDLAQSRERKHVTLATKSNGIAISMPWWDRRAEDVAKAYPDVTLDKQHIDILTARFVLQPGRFDVVAATNLFGDILSDLGPATTGTIGLAPSANLNPDRSFPSLFEPVHGSAPDIYGKNIANPIAMVWSAALMLDFLTHGQGAGRAAHDAIVSAIEEVIKNGPRTPDLGGTASTTEVGQAIAAQIAGK</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="86" xmlns="http://uniprot.org/uniprot">
    <accession>A9BTP3</accession>
    <name>A9BTP3_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="8">Methylenetetrahydrofolate reductase</fullName>
            <ecNumber evidence="8">1.5.1.20</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="9" type="ordered locus">Daci_2669</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="9 10" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="10" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="2 8">
            <text>(6S)-5-methyl-5,6,7,8-tetrahydrofolate + NAD(+) = (6R)-5,10-methylene-5,6,7,8-tetrahydrofolate + H(+) + NADH</text>
            <dbReference type="Rhea" id="RHEA:19821"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:15636"/>
            <dbReference type="ChEBI" id="CHEBI:18608"/>
            <dbReference type="ChEBI" id="CHEBI:57540"/>
            <dbReference type="ChEBI" id="CHEBI:57945"/>
            <dbReference type="EC" id="1.5.1.20"/>
        </reaction>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1 8">
            <text>(6S)-5-methyl-5,6,7,8-tetrahydrofolate + NADP(+) = (6R)-5,10-methylene-5,6,7,8-tetrahydrofolate + H(+) + NADPH</text>
            <dbReference type="Rhea" id="RHEA:19817"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:15636"/>
            <dbReference type="ChEBI" id="CHEBI:18608"/>
            <dbReference type="ChEBI" id="CHEBI:57783"/>
            <dbReference type="ChEBI" id="CHEBI:58349"/>
            <dbReference type="EC" id="1.5.1.20"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="3 8">
            <name>FAD</name>
            <dbReference type="ChEBI" id="CHEBI:57692"/>
        </cofactor>
    </comment>
    <comment type="pathway">
        <text evidence="4 8">One-carbon metabolism; tetrahydrofolate interconversion.</text>
    </comment>
    <comment type="similarity">
        <text evidence="8">Belongs to the methylenetetrahydrofolate reductase family.</text>
    </comment>
    <dbReference type="EC" id="1.5.1.20" evidence="8"/>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX35307.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_003056080.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_2669"/>
    <dbReference type="PRIDE" id="A9BTP3"/>
    <dbReference type="EnsemblBacteria" id="ABX35307">
        <property type="protein sequence ID" value="ABX35307"/>
        <property type="gene ID" value="Daci_2669"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_2669"/>
    <dbReference type="eggNOG" id="COG0685">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_081788_0_0_4"/>
    <dbReference type="OMA" id="VYIAHIE"/>
    <dbReference type="UniPathway" id="UPA00193"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0106312">
        <property type="term" value="F:methylenetetrahydrofolate reductase NADH activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="RHEA"/>
    </dbReference>
    <dbReference type="GO" id="GO:0106313">
        <property type="term" value="F:methylenetetrahydrofolate reductase NADPH activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="RHEA"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006555">
        <property type="term" value="P:methionine metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0035999">
        <property type="term" value="P:tetrahydrofolate interconversion"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniPathway"/>
    </dbReference>
    <dbReference type="CDD" id="cd00537">
        <property type="entry name" value="MTHFR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029041">
        <property type="entry name" value="FAD-linked_oxidoreductase-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003171">
        <property type="entry name" value="Mehydrof_redctse-like"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02219">
        <property type="entry name" value="MTHFR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51730">
        <property type="entry name" value="SSF51730"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="6 8" id="KW-0274">FAD</keyword>
    <keyword evidence="5 8" id="KW-0285">Flavoprotein</keyword>
    <keyword evidence="7 8" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00000431"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00001287"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00001974"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00004777"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022630"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022827"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023002"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="RuleBase" id="RU003862"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="ABX35307.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="300" mass="31861" checksum="F2C26FD4A2BEBB7A" modified="2008-01-15" version="1">MASPLLHSDKSKPIGNITDAYSLEVNAKDISALTAAAPRVLPGSTISIPYLANQDNDARLAAAQAVRGLGFEPMPHLAARRIASFAKLESFIQRAVAEAGVKRCFVIAGDPSTPLGPFADSSSLIESGVFERSGIQMVGVGGHPEGHPVMSTSDRWKVLEHKCRCIEGRGMAPLIVTQFAFDADIVLAWLEALRGRGVEHPVRVGVPGPAGVAVLARYAALCGVSACASMLSKYGISISKLFGIAGPDLFVDRLTTRLTEAHGKVSLHFFPFGGIAQSVKWVEQYCSRAEPEQPIDTAPM</sequence>
</entry>
<entry dataset="Swiss-Prot" created="2009-04-14" modified="2022-08-03" version="78" xmlns="http://uniprot.org/uniprot">
    <accession>A9BUL2</accession>
    <name>LPXC_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">UDP-3-O-acyl-N-acetylglucosamine deacetylase</fullName>
            <shortName evidence="1">UDP-3-O-acyl-GlcNAc deacetylase</shortName>
            <ecNumber evidence="1">3.5.1.108</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="1">UDP-3-O-[R-3-hydroxymyristoyl]-N-acetylglucosamine deacetylase</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="1" type="primary">lpxC</name>
        <name type="ordered locus">Daci_1476</name>
    </gene>
    <organism>
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference key="1">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain>DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="1">Catalyzes the hydrolysis of UDP-3-O-myristoyl-N-acetylglucosamine to form UDP-3-O-myristoylglucosamine and acetate, the committed step in lipid A biosynthesis.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>a UDP-3-O-[(3R)-3-hydroxyacyl]-N-acetyl-alpha-D-glucosamine + H2O = a UDP-3-O-[(3R)-3-hydroxyacyl]-alpha-D-glucosamine + acetate</text>
            <dbReference type="Rhea" id="RHEA:67816"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:30089"/>
            <dbReference type="ChEBI" id="CHEBI:137740"/>
            <dbReference type="ChEBI" id="CHEBI:173225"/>
            <dbReference type="EC" id="3.5.1.108"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </cofactor>
    </comment>
    <comment type="pathway">
        <text evidence="1">Glycolipid biosynthesis; lipid IV(A) biosynthesis; lipid IV(A) from (3R)-3-hydroxytetradecanoyl-[acyl-carrier-protein] and UDP-N-acetyl-alpha-D-glucosamine: step 2/6.</text>
    </comment>
    <comment type="similarity">
        <text evidence="1">Belongs to the LpxC family.</text>
    </comment>
    <dbReference type="EC" id="3.5.1.108" evidence="1"/>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX34120.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012203406.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A9BUL2"/>
    <dbReference type="SMR" id="A9BUL2"/>
    <dbReference type="STRING" id="398578.Daci_1476"/>
    <dbReference type="PRIDE" id="A9BUL2"/>
    <dbReference type="EnsemblBacteria" id="ABX34120">
        <property type="protein sequence ID" value="ABX34120"/>
        <property type="gene ID" value="Daci_1476"/>
    </dbReference>
    <dbReference type="GeneID" id="60686017"/>
    <dbReference type="KEGG" id="dac:Daci_1476"/>
    <dbReference type="eggNOG" id="COG0774">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_046528_1_0_4"/>
    <dbReference type="OMA" id="IVFYRSD"/>
    <dbReference type="UniPathway" id="UPA00359">
        <property type="reaction ID" value="UER00478"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008759">
        <property type="term" value="F:UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0103117">
        <property type="term" value="F:UDP-3-O-acyl-N-acetylglucosamine deacetylase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009245">
        <property type="term" value="P:lipid A biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.1700.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.230.20">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00388">
        <property type="entry name" value="LpxC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020568">
        <property type="entry name" value="Ribosomal_S5_D2-typ_fold"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004463">
        <property type="entry name" value="UDP-acyl_GlcNac_deAcase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011334">
        <property type="entry name" value="UDP-acyl_GlcNac_deAcase_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015870">
        <property type="entry name" value="UDP-acyl_N-AcGlcN_deAcase_N"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33694">
        <property type="entry name" value="PTHR33694"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03331">
        <property type="entry name" value="LpxC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54211">
        <property type="entry name" value="SSF54211"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00325">
        <property type="entry name" value="lpxC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword id="KW-0378">Hydrolase</keyword>
    <keyword id="KW-0441">Lipid A biosynthesis</keyword>
    <keyword id="KW-0444">Lipid biosynthesis</keyword>
    <keyword id="KW-0443">Lipid metabolism</keyword>
    <keyword id="KW-0479">Metal-binding</keyword>
    <keyword id="KW-1185">Reference proteome</keyword>
    <keyword id="KW-0862">Zinc</keyword>
    <feature type="chain" id="PRO_1000122778" description="UDP-3-O-acyl-N-acetylglucosamine deacetylase">
        <location>
            <begin position="1"/>
            <end position="307"/>
        </location>
    </feature>
    <feature type="active site" description="Proton donor" evidence="1">
        <location>
            <position position="268"/>
        </location>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <position position="78"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <position position="241"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <position position="245"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000255" key="1">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00388"/>
        </source>
    </evidence>
    <sequence length="307" mass="33926" checksum="08DDB72081B01DE4" modified="2008-01-15" version="1">MLQQRTIKTITRAVGVGLHSGQRVELTLRPAQPDTGIVFRRVDLPEPVDIPISAEAVTDTRMASTIGTGGAKVHTVEHLMSAIAGLGLDNIYIDITAEEVPILDGSSASFVFLLQSAGIELQKAPKRFIRVIRPVEVREGEGQNLKWARFDPYHGFKLRFEIDFAHPAVDSTGQCVEFDMGEDNYTRDIARARTFGFTKDVEMLRSHGLALGGGMDNAIVMDDYKVLNSDGLRYDDEFAKHKILDAIGDLYLIGRPLLAAYSAFRSGHGMNNQLLRALLAQPDAWELVSFDSERQAPKGFAQPARAW</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="60" xmlns="http://uniprot.org/uniprot">
    <accession>A9BUP7</accession>
    <name>A9BUP7_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">HTH cro/C1-type domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_1511</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX34155.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012203441.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_1511"/>
    <dbReference type="PRIDE" id="A9BUP7"/>
    <dbReference type="EnsemblBacteria" id="ABX34155">
        <property type="protein sequence ID" value="ABX34155"/>
        <property type="gene ID" value="Daci_1511"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_1511"/>
    <dbReference type="eggNOG" id="COG2320">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_124846_1_0_4"/>
    <dbReference type="OMA" id="WHAGMGY"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd00093">
        <property type="entry name" value="HTH_XRE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.260.40">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001387">
        <property type="entry name" value="Cro/C1-type_HTH"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010982">
        <property type="entry name" value="Lambda_DNA-bd_dom_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01381">
        <property type="entry name" value="HTH_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47413">
        <property type="entry name" value="SSF47413"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50943">
        <property type="entry name" value="HTH_CROC1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HTH cro/C1-type" evidence="1">
        <location>
            <begin position="40"/>
            <end position="74"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS50943"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX34155.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="134" mass="14975" checksum="1B31DAEA7BB9CDE0" modified="2008-01-15" version="1">MRNKLEFALRLRQAIEAAGLEPRPSVLLKLFNSSYWGPPISFQAVSRWLNGEAVPEQDKLVLLAGLLEVEPDVLRYGESAHRSPPSLPSPLECQEPGVGYLERETFDAFLKLPAPQRQVVREVILTFAKVHGEG</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="68" xmlns="http://uniprot.org/uniprot">
    <accession>A9BUQ6</accession>
    <name>A9BUQ6_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Molybdenum ABC transporter, periplasmic molybdate-binding protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ordered locus">Daci_1520</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="6" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the bacterial solute-binding protein ModA family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX34164.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_1520"/>
    <dbReference type="PRIDE" id="A9BUQ6"/>
    <dbReference type="EnsemblBacteria" id="ABX34164">
        <property type="protein sequence ID" value="ABX34164"/>
        <property type="gene ID" value="Daci_1520"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_1520"/>
    <dbReference type="eggNOG" id="COG0725">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_065520_1_0_4"/>
    <dbReference type="OMA" id="DITRPKK"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030973">
        <property type="term" value="F:molybdate ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015689">
        <property type="term" value="P:molybdate ion transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd13539">
        <property type="entry name" value="PBP2_AvModA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR044084">
        <property type="entry name" value="AvModA-like_subst-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005950">
        <property type="entry name" value="ModA"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF004846">
        <property type="entry name" value="ModA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01256">
        <property type="entry name" value="modA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="3" id="KW-0500">Molybdenum</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 4" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="4">
        <location>
            <begin position="1"/>
            <end position="44"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5002732536" evidence="4">
        <location>
            <begin position="45"/>
            <end position="272"/>
        </location>
    </feature>
    <feature type="binding site" evidence="3">
        <location>
            <position position="81"/>
        </location>
        <ligand>
            <name>molybdate</name>
            <dbReference type="ChEBI" id="CHEBI:36264"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="3">
        <location>
            <position position="189"/>
        </location>
        <ligand>
            <name>molybdate</name>
            <dbReference type="ChEBI" id="CHEBI:36264"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00009175"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022729"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="PIRSR" id="PIRSR004846-1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="ABX34164.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="272" mass="29409" checksum="58E38466E62377BE" modified="2008-01-15" version="1">MRIFRSLHCAIHQRNSERPMNVNQPLRATAFAALALLGWAAAQAAEVSVAVAANFTAPMQKIAAEFEKDTGHKALLSFGATGKFYAQIVNGAPFQILLAADDTTPEKIAKEGRGLPDSRFTYAIGQLVLWSPKAGYVDDKGEVLKTGDYKHIAVANPKLAPYGTAAMEVLNKLGITAQVQPRIVMGENIAQTYQFAATGNAQLGFVALSQVMENGKLREGSAWQVPGSMHEPIRQDAIVLNSGKDNEAAAELIKYLRADKARAIIRSYGYSF</sequence>
</entry>
<entry dataset="Swiss-Prot" created="2009-04-14" modified="2022-08-03" version="94" xmlns="http://uniprot.org/uniprot">
    <accession>A9BUZ7</accession>
    <name>GPDA_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Glycerol-3-phosphate dehydrogenase [NAD(P)+]</fullName>
            <ecNumber evidence="1">1.1.1.94</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="1">NAD(P)H-dependent glycerol-3-phosphate dehydrogenase</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="1" type="primary">gpsA</name>
        <name type="ordered locus">Daci_1817</name>
    </gene>
    <organism>
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference key="1">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain>DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>NAD(+) + sn-glycerol 3-phosphate = dihydroxyacetone phosphate + H(+) + NADH</text>
            <dbReference type="Rhea" id="RHEA:11092"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:57540"/>
            <dbReference type="ChEBI" id="CHEBI:57597"/>
            <dbReference type="ChEBI" id="CHEBI:57642"/>
            <dbReference type="ChEBI" id="CHEBI:57945"/>
            <dbReference type="EC" id="1.1.1.94"/>
        </reaction>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>NADP(+) + sn-glycerol 3-phosphate = dihydroxyacetone phosphate + H(+) + NADPH</text>
            <dbReference type="Rhea" id="RHEA:11096"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:57597"/>
            <dbReference type="ChEBI" id="CHEBI:57642"/>
            <dbReference type="ChEBI" id="CHEBI:57783"/>
            <dbReference type="ChEBI" id="CHEBI:58349"/>
            <dbReference type="EC" id="1.1.1.94"/>
        </reaction>
    </comment>
    <comment type="pathway">
        <text evidence="1">Membrane lipid metabolism; glycerophospholipid metabolism.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="1">Belongs to the NAD-dependent glycerol-3-phosphate dehydrogenase family.</text>
    </comment>
    <dbReference type="EC" id="1.1.1.94" evidence="1"/>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX34459.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012203744.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A9BUZ7"/>
    <dbReference type="SMR" id="A9BUZ7"/>
    <dbReference type="STRING" id="398578.Daci_1817"/>
    <dbReference type="PRIDE" id="A9BUZ7"/>
    <dbReference type="EnsemblBacteria" id="ABX34459">
        <property type="protein sequence ID" value="ABX34459"/>
        <property type="gene ID" value="Daci_1817"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_1817"/>
    <dbReference type="eggNOG" id="COG0240">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_033449_0_2_4"/>
    <dbReference type="OMA" id="NRMFGNM"/>
    <dbReference type="UniPathway" id="UPA00940"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009331">
        <property type="term" value="C:glycerol-3-phosphate dehydrogenase complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004367">
        <property type="term" value="F:glycerol-3-phosphate dehydrogenase [NAD+] activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051287">
        <property type="term" value="F:NAD binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005975">
        <property type="term" value="P:carbohydrate metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046167">
        <property type="term" value="P:glycerol-3-phosphate biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046168">
        <property type="term" value="P:glycerol-3-phosphate catabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006650">
        <property type="term" value="P:glycerophospholipid metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniPathway"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008654">
        <property type="term" value="P:phospholipid biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.1040.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00394">
        <property type="entry name" value="NAD_Glyc3P_dehydrog"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008927">
        <property type="entry name" value="6-PGluconate_DH-like_C_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013328">
        <property type="entry name" value="6PGD_dom2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006168">
        <property type="entry name" value="G3P_DH_NAD-dep"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006109">
        <property type="entry name" value="G3P_DH_NAD-dep_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011128">
        <property type="entry name" value="G3P_DH_NAD-dep_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036291">
        <property type="entry name" value="NAD(P)-bd_dom_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07479">
        <property type="entry name" value="NAD_Gly3P_dh_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01210">
        <property type="entry name" value="NAD_Gly3P_dh_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF000114">
        <property type="entry name" value="Glycerol-3-P_dh"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00077">
        <property type="entry name" value="GPDHDRGNASE"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48179">
        <property type="entry name" value="SSF48179"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51735">
        <property type="entry name" value="SSF51735"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00957">
        <property type="entry name" value="NAD_G3PDH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword id="KW-0963">Cytoplasm</keyword>
    <keyword id="KW-0444">Lipid biosynthesis</keyword>
    <keyword id="KW-0443">Lipid metabolism</keyword>
    <keyword id="KW-0520">NAD</keyword>
    <keyword id="KW-0560">Oxidoreductase</keyword>
    <keyword id="KW-0594">Phospholipid biosynthesis</keyword>
    <keyword id="KW-1208">Phospholipid metabolism</keyword>
    <keyword id="KW-1185">Reference proteome</keyword>
    <feature type="chain" id="PRO_1000190134" description="Glycerol-3-phosphate dehydrogenase [NAD(P)+]">
        <location>
            <begin position="1"/>
            <end position="336"/>
        </location>
    </feature>
    <feature type="active site" description="Proton acceptor" evidence="1">
        <location>
            <position position="196"/>
        </location>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <begin position="7"/>
            <end position="12"/>
        </location>
        <ligand>
            <name>NAD(+)</name>
            <dbReference type="ChEBI" id="CHEBI:57540"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <position position="105"/>
        </location>
        <ligand>
            <name>NAD(+)</name>
            <dbReference type="ChEBI" id="CHEBI:57540"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <position position="105"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <position position="145"/>
        </location>
        <ligand>
            <name>NAD(+)</name>
            <dbReference type="ChEBI" id="CHEBI:57540"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <begin position="260"/>
            <end position="261"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <position position="260"/>
        </location>
        <ligand>
            <name>NAD(+)</name>
            <dbReference type="ChEBI" id="CHEBI:57540"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <position position="286"/>
        </location>
        <ligand>
            <name>NAD(+)</name>
            <dbReference type="ChEBI" id="CHEBI:57540"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000255" key="1">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00394"/>
        </source>
    </evidence>
    <sequence length="336" mass="34612" checksum="D735766962E8EDB6" modified="2008-01-15" version="1">MNIVVIGAGAWGTALAMSAAARGDGRVVTLWARDAAQAQAMRDSGENARYLPGVALPAALQVVHGEIDGHLAAADLIVIGTPMAALREWLGRLQHVPAPVAWLCKGFEAVPAGASAAAHGLMAHEVCAEVAPDLLCGVLSGPSFAAEVARHQPTALVAASRHAEVNDALVAAFHGDAMRVYANADIVGVEVGGAVKNVLAIATGLCDGLQLGLNARAALITRGLAEMTRLGLALGARTETFMGLSGLGDLVLTATGDLSRNRKVGLLLAQGRTLEQAVASLGHVAEGVYSARTVLARARLLNVEMPITETVVELLDGRLQAAEAVQHLMARDPRGE</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="71" xmlns="http://uniprot.org/uniprot">
    <accession>A9BV04</accession>
    <name>A9BV04_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="8">ABC transporter related</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="8" type="ordered locus">Daci_1824</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="9" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX34466.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_1824"/>
    <dbReference type="PRIDE" id="A9BV04"/>
    <dbReference type="EnsemblBacteria" id="ABX34466">
        <property type="protein sequence ID" value="ABX34466"/>
        <property type="gene ID" value="Daci_1824"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_1824"/>
    <dbReference type="eggNOG" id="COG1131">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_046985_0_0_4"/>
    <dbReference type="OMA" id="YKMRFEL"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003593">
        <property type="entry name" value="AAA+_ATPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003439">
        <property type="entry name" value="ABC_transporter-like_ATP-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00005">
        <property type="entry name" value="ABC_tran"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00382">
        <property type="entry name" value="AAA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50893">
        <property type="entry name" value="ABC_TRANSPORTER_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3 6" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="1" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="5" id="KW-0472">Membrane</keyword>
    <keyword evidence="2 6" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4" id="KW-1278">Translocase</keyword>
    <feature type="domain" description="ABC transporter" evidence="7">
        <location>
            <begin position="60"/>
            <end position="291"/>
        </location>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <begin position="93"/>
            <end position="100"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022967"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00434"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="PROSITE" id="PS50893"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="ABX34466.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="355" mass="39195" checksum="B1688A513425FAFA" modified="2008-01-15" version="1">MQQSLLTALDAWDGLAADSGAEPRRALVQQAFDALHAAHAPGQALQADSAPPSAHRAHRVQGRQLVKRYRRGDFALGPVDVAVEPGTILGLVGENGNGKTTLLRLLAADLAPDAGQLDWGVPATDAYLLRTQLAYIPQRPAVWGGRLMDHLQFAARSHGAVGQRNICLVQLVIAQLGLRAFRSHQWKQLSSGYKMRFELARALLCRPRVLLLDEPLANLDINAQQTLLTDLQSLARSPWQAMALVLSSQQLYEVEKVADQVLFLEQGQPRSVQQSFAAMEGCAIEFETGWAMAQLKPWLDRLPSHTHQLSGQTHIVSFHVPFTAAQFLAQAVQAQMPVRYFRDITASTRRLFVRD</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="60" xmlns="http://uniprot.org/uniprot">
    <accession>A9BV56</accession>
    <name>A9BV56_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Mur ligase middle domain protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_2080</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX34720.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_2080"/>
    <dbReference type="PRIDE" id="A9BV56"/>
    <dbReference type="EnsemblBacteria" id="ABX34720">
        <property type="protein sequence ID" value="ABX34720"/>
        <property type="gene ID" value="Daci_2080"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_2080"/>
    <dbReference type="eggNOG" id="COG0770">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_294724_0_0_4"/>
    <dbReference type="OMA" id="CARWIGI"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016874">
        <property type="term" value="F:ligase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009058">
        <property type="term" value="P:biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.1190.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.190.20">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036565">
        <property type="entry name" value="Mur-like_cat_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036615">
        <property type="entry name" value="Mur_ligase_C_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008930">
        <property type="entry name" value="Terpenoid_cyclase/PrenylTrfase"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48239">
        <property type="entry name" value="SSF48239"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53244">
        <property type="entry name" value="SSF53244"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53623">
        <property type="entry name" value="SSF53623"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0436">Ligase</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="24"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="540"/>
            <end position="590"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="614"/>
            <end position="633"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="562"/>
            <end position="576"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="617"/>
            <end position="633"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX34720.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="1097" mass="116512" checksum="6C38DB8763BD4189" modified="2008-01-15" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="95" xmlns="http://uniprot.org/uniprot">
    <accession>A9BVB5</accession>
    <name>A9BVB5_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">Histidine kinase</fullName>
            <ecNumber evidence="2">2.7.13.3</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="9" type="ordered locus">Daci_2139</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="9 10" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="10" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>ATP + protein L-histidine = ADP + protein N-phospho-L-histidine.</text>
            <dbReference type="EC" id="2.7.13.3"/>
        </reaction>
    </comment>
    <dbReference type="EC" id="2.7.13.3" evidence="2"/>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX34779.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012204062.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_2139"/>
    <dbReference type="PRIDE" id="A9BVB5"/>
    <dbReference type="EnsemblBacteria" id="ABX34779">
        <property type="protein sequence ID" value="ABX34779"/>
        <property type="gene ID" value="Daci_2139"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_2139"/>
    <dbReference type="eggNOG" id="COG2205">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_000445_89_37_4"/>
    <dbReference type="OMA" id="HERAWEW"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000155">
        <property type="term" value="F:phosphorelay sensor kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd00082">
        <property type="entry name" value="HisKA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.565.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003660">
        <property type="entry name" value="HAMP_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003594">
        <property type="entry name" value="HATPase_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036890">
        <property type="entry name" value="HATPase_C_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005467">
        <property type="entry name" value="His_kinase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003661">
        <property type="entry name" value="HisK_dim/P"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036097">
        <property type="entry name" value="HisK_dim/P_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004358">
        <property type="entry name" value="Sig_transdc_His_kin-like_C"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02518">
        <property type="entry name" value="HATPase_c"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00512">
        <property type="entry name" value="HisKA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00344">
        <property type="entry name" value="BCTRLSENSOR"/>
    </dbReference>
    <dbReference type="SMART" id="SM00387">
        <property type="entry name" value="HATPase_c"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00388">
        <property type="entry name" value="HisKA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47384">
        <property type="entry name" value="SSF47384"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55874">
        <property type="entry name" value="SSF55874"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50885">
        <property type="entry name" value="HAMP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50109">
        <property type="entry name" value="HIS_KIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="5 9" id="KW-0418">Kinase</keyword>
    <keyword evidence="6" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-0597">Phosphoprotein</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4" id="KW-0808">Transferase</keyword>
    <keyword evidence="6" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="6" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="20"/>
            <end position="44"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="174"/>
            <end position="197"/>
        </location>
    </feature>
    <feature type="domain" description="HAMP" evidence="8">
        <location>
            <begin position="194"/>
            <end position="246"/>
        </location>
    </feature>
    <feature type="domain" description="Histidine kinase" evidence="7">
        <location>
            <begin position="254"/>
            <end position="473"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00000085"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00012438"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022553"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022777"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="PROSITE" id="PS50109"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="PROSITE" id="PS50885"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="ABX34779.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="476" mass="51218" checksum="084DF7D5D7D16923" modified="2008-01-15" version="1">MKAAACLRRAWRAGAEPSLIRRLVLAQAVVLVVVWIALGALLMVEFQSDASELDPLRHDAVLAVAGPLLDRPAALQEALARIDLARRTEGQLPGQPRWRVNMMVWHGPQLLFVSPGLSAPIVQTATDRIETVTAAGERWRAMTRSDASGQLRVTLAISNEPGRGMLTLASSSLLVLPLLISAPLLVFPAWAAVWLALRPWRRLSAEIARRGMGDLAPLGFQPRHRELKPLAHSVNRLLQSVRDGLARERSFIADAAHELRTPVAAIRVHAEALNNLPLPAGLADRLGARLDALVGCSARASRLVDQMLALMRADAGPSAPGMQSLEIDRLLQQRLGCLAGLARERGVELDLDAEGPLPLWGERQAMESLIDNLVDNAIKYSPPGGLVRVRARWDAATQATVLEVMDEGPGIAPAWRSRVFDRFFRAPDQAVAGSGLGLAIVAAVVRQHGGSIVCDDADDGPGLCMRVSFPGGTAPH</sequence>
</entry>
<entry dataset="Swiss-Prot" created="2009-03-24" modified="2022-08-03" version="78" xmlns="http://uniprot.org/uniprot">
    <accession>A9BVD2</accession>
    <name>APAH_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Bis(5'-nucleosyl)-tetraphosphatase, symmetrical</fullName>
            <ecNumber evidence="1">3.6.1.41</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="1">Ap4A hydrolase</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="1">Diadenosine 5',5'''-P1,P4-tetraphosphate pyrophosphohydrolase</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="1">Diadenosine tetraphosphatase</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="1" type="primary">apaH</name>
        <name type="ordered locus">Daci_2156</name>
    </gene>
    <organism>
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference key="1">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain>DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="1">Hydrolyzes diadenosine 5',5'''-P1,P4-tetraphosphate to yield ADP.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>H2O + P(1),P(4)-bis(5'-adenosyl) tetraphosphate = 2 ADP + 2 H(+)</text>
            <dbReference type="Rhea" id="RHEA:24252"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:58141"/>
            <dbReference type="ChEBI" id="CHEBI:456216"/>
            <dbReference type="EC" id="3.6.1.41"/>
        </reaction>
    </comment>
    <comment type="similarity">
        <text evidence="1">Belongs to the Ap4A hydrolase family.</text>
    </comment>
    <dbReference type="EC" id="3.6.1.41" evidence="1"/>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX34796.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012204079.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A9BVD2"/>
    <dbReference type="SMR" id="A9BVD2"/>
    <dbReference type="STRING" id="398578.Daci_2156"/>
    <dbReference type="PRIDE" id="A9BVD2"/>
    <dbReference type="EnsemblBacteria" id="ABX34796">
        <property type="protein sequence ID" value="ABX34796"/>
        <property type="gene ID" value="Daci_2156"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_2156"/>
    <dbReference type="eggNOG" id="COG0639">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_056184_1_0_4"/>
    <dbReference type="OMA" id="INAFTRM"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008803">
        <property type="term" value="F:bis(5'-nucleosyl)-tetraphosphatase (symmetrical) activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd07422">
        <property type="entry name" value="MPP_ApaH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.60.21.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00199">
        <property type="entry name" value="ApaH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004617">
        <property type="entry name" value="ApaH"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004843">
        <property type="entry name" value="Calcineurin-like_PHP_ApaH"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029052">
        <property type="entry name" value="Metallo-depent_PP-like"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00149">
        <property type="entry name" value="Metallophos"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF000903">
        <property type="entry name" value="B5n-ttraPtase_sm"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56300">
        <property type="entry name" value="SSF56300"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00668">
        <property type="entry name" value="apaH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword id="KW-0378">Hydrolase</keyword>
    <keyword id="KW-1185">Reference proteome</keyword>
    <feature type="chain" id="PRO_1000099321" description="Bis(5'-nucleosyl)-tetraphosphatase, symmetrical">
        <location>
            <begin position="1"/>
            <end position="281"/>
        </location>
    </feature>
    <evidence type="ECO:0000255" key="1">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00199"/>
        </source>
    </evidence>
    <sequence length="281" mass="31172" checksum="0ADAB5D60C1FE026" modified="2008-01-15" version="1">MALYCIGDIQGCHDAFERLLHRVDFSASRDTLYILGDLVNRGPESDKVLRTCMAAGDSMRALLGNHDLHLLAAAQGVRRSSRRDTLARVLDAPDRDQLLDWLRHQPLARSHRMAHGEELLMVHAGVLPQWSSQEVMALAGEVHSVLRSKQLPDFLQAMYGNQPDRWSPDLQGWERLRVIVNALTRLRFCTAQGVMDFDSTESAEQAAPGLMPWFDVPGRATASATIAFGHWSTLGHISRPDLVALDTGCVWGGCLSMMRFGDHLADRELIQVDCPQAQAPG</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="83" xmlns="http://uniprot.org/uniprot">
    <accession>A9BVD3</accession>
    <name>A9BVD3_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="11">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="11" type="ordered locus">Daci_2157</name>
    </gene>
    <organism evidence="11 12">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="11 12" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="12">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="12" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="12">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX34797.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012204080.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_2157"/>
    <dbReference type="PRIDE" id="A9BVD3"/>
    <dbReference type="EnsemblBacteria" id="ABX34797">
        <property type="protein sequence ID" value="ABX34797"/>
        <property type="gene ID" value="Daci_2157"/>
    </dbReference>
    <dbReference type="GeneID" id="60686552"/>
    <dbReference type="KEGG" id="dac:Daci_2157"/>
    <dbReference type="eggNOG" id="COG1253">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_015237_4_0_4"/>
    <dbReference type="OMA" id="DLMIPRV"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0050660">
        <property type="term" value="F:flavin adenine dinucleotide binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd04590">
        <property type="entry name" value="CBS_pair_CorC_HlyC_assoc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.10.580.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.465.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000644">
        <property type="entry name" value="CBS_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR046342">
        <property type="entry name" value="CBS_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002550">
        <property type="entry name" value="CNNM"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036318">
        <property type="entry name" value="FAD-bd_PCMH-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016169">
        <property type="entry name" value="FAD-bd_PCMH_sub2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR044751">
        <property type="entry name" value="Ion_transp-like_CBS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005170">
        <property type="entry name" value="Transptr-assoc_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00571">
        <property type="entry name" value="CBS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03471">
        <property type="entry name" value="CorC_HlyC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01595">
        <property type="entry name" value="DUF21"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM01091">
        <property type="entry name" value="CorC_HlyC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54631">
        <property type="entry name" value="SSF54631"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56176">
        <property type="entry name" value="SSF56176"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51371">
        <property type="entry name" value="CBS"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51846">
        <property type="entry name" value="CNNM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="5 7" id="KW-0129">CBS domain</keyword>
    <keyword evidence="6 8" id="KW-0472">Membrane</keyword>
    <keyword evidence="12" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0677">Repeat</keyword>
    <keyword evidence="2 8" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="4 8" id="KW-1133">Transmembrane helix</keyword>
    <feature type="domain" description="CNNM transmembrane" evidence="10">
        <location>
            <begin position="1"/>
            <end position="196"/>
        </location>
    </feature>
    <feature type="domain" description="CBS" evidence="9">
        <location>
            <begin position="215"/>
            <end position="280"/>
        </location>
    </feature>
    <feature type="domain" description="CBS" evidence="9">
        <location>
            <begin position="281"/>
            <end position="340"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022737"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023122"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00703"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU01193"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="9">
        <source>
            <dbReference type="PROSITE" id="PS51371"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="10">
        <source>
            <dbReference type="PROSITE" id="PS51846"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="EMBL" id="ABX34797.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="437" mass="47076" checksum="EA20386E229C5264" modified="2008-01-15" version="1">MDFLLIALLTLLNGVFAMSELALASSRKARLVALAETGDKGAVAALALLENPTQFLSSVQVGITSIGLLNGILGEAAFSDGLAAWLLGLGIPERAASISATALVVTVITFVTIVFGELVPKRIGQLYPETVATVVSRPMTWVASAAKPFVRLLAFSTRAMLTLLRINESAARAVTEEEIVASLAEGRDAGVIEANEHQMVQNVFHLDDRSLTSIMVPRGDVQWLDADMTVTEALQASADDHSKGGHSWYPVCRNSLDDVVGIISVARLLALGSDAAGTTLYEHVLPASFLPETLSAMELLEQLRARSGRMVFVVDEYGVVQGIMTPRDLLEAITGELQPVTEAEAWAMQREDGSWLLDGLMPISELKARLDIRDLPDEHRGRYNTVAGLLMAESGHLPILGERVSCAGWIFEVIDLDGKRIDKVLAISDLSENYSSQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="65" xmlns="http://uniprot.org/uniprot">
    <accession>A9BVG9</accession>
    <name>A9BVG9_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="8">Cytochrome d ubiquinol oxidase, subunit II</fullName>
            <ecNumber evidence="8">3.1.3.1</ecNumber>
        </submittedName>
    </protein>
    <gene>
        <name evidence="8" type="ordered locus">Daci_2398</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="9" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the cytochrome ubiquinol oxidase subunit 2 family.</text>
    </comment>
    <dbReference type="EC" id="3.1.3.1" evidence="8"/>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX35036.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012204318.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_2398"/>
    <dbReference type="PRIDE" id="A9BVG9"/>
    <dbReference type="EnsemblBacteria" id="ABX35036">
        <property type="protein sequence ID" value="ABX35036"/>
        <property type="gene ID" value="Daci_2398"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_2398"/>
    <dbReference type="eggNOG" id="COG1294">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_049294_0_0_4"/>
    <dbReference type="OMA" id="FLWGVAF"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004035">
        <property type="term" value="F:alkaline phosphatase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003317">
        <property type="entry name" value="Cyt-d_oxidase_su2"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43141">
        <property type="entry name" value="PTHR43141"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02322">
        <property type="entry name" value="Cyt_bd_oxida_II"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF000267">
        <property type="entry name" value="Cyt_oxidse_sub2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00203">
        <property type="entry name" value="cydB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="8" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="6 7" id="KW-0472">Membrane</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4 7" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="5 7" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="14"/>
            <end position="41"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="83"/>
            <end position="104"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="124"/>
            <end position="146"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="166"/>
            <end position="187"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="208"/>
            <end position="229"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="268"/>
            <end position="289"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="296"/>
            <end position="319"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="339"/>
            <end position="363"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00007543"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="ABX35036.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="383" mass="41539" checksum="A71FF56C3CCEB9B3" modified="2008-01-15" version="1">MILHELISYDILRLLWWGLLGVLLIAFAVTDGFDLGAAALLPLAARTDVERRVVINSLGPVWEGNQVWLILGGGAIFAAWPQLYAVSFSGFYLAMFAALVALILRPVAFKFRSKREEPAWRARWDAVLCMAGVVPALIFGVALGNVLQGVPFRLAPDMRIYYEGTFFGLLNPFALLAGLVSLCMLLMHGASWLVFKTEGDVAARARRFGMVAAVATTVLFAAAGVWLAALNGYRITSEINTTGPSNPLFKTAALQAGAWFANYQARPVLWAVPAIGLLMPLLAALGLWLRREWLALLSSGLGIAGIIASVGASMFPFILPSSLNPQHSLTVWDSSSSHVTLFIMLVCALIFVPLIVAYTSWVYSVLRGKVDPMAIIEGRGHSY</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="63" xmlns="http://uniprot.org/uniprot">
    <accession>A9BVI9</accession>
    <name>A9BVI9_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Acriflavin resistance protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_2418</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX35056.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012204338.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_2418"/>
    <dbReference type="PRIDE" id="A9BVI9"/>
    <dbReference type="EnsemblBacteria" id="ABX35056">
        <property type="protein sequence ID" value="ABX35056"/>
        <property type="gene ID" value="Daci_2418"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_2418"/>
    <dbReference type="eggNOG" id="COG0841">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_002755_1_2_4"/>
    <dbReference type="OMA" id="PAVDYIN"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="GO" id="GO:0022857">
        <property type="term" value="F:transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.2090.10">
        <property type="match status" value="3"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027463">
        <property type="entry name" value="AcrB_DN_DC_subdom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001036">
        <property type="entry name" value="Acrflvin-R"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR32063">
        <property type="entry name" value="PTHR32063"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00873">
        <property type="entry name" value="ACR_tran"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00702">
        <property type="entry name" value="ACRIFLAVINRP"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF82714">
        <property type="entry name" value="SSF82714"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="337"/>
            <end position="353"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="360"/>
            <end position="381"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="431"/>
            <end position="451"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="463"/>
            <end position="491"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="524"/>
            <end position="546"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="918"/>
            <end position="938"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="971"/>
            <end position="996"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="1016"/>
            <end position="1037"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="1049"/>
            <end position="1075"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX35056.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="1099" mass="116177" checksum="979CE12DD73DAF92" modified="2008-01-15" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2021-06-02" version="41" xmlns="http://uniprot.org/uniprot">
    <accession>A9BVP4</accession>
    <name>A9BVP4_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_2473</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX35111.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012204392.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_2473"/>
    <dbReference type="EnsemblBacteria" id="ABX35111">
        <property type="protein sequence ID" value="ABX35111"/>
        <property type="gene ID" value="Daci_2473"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_2473"/>
    <dbReference type="eggNOG" id="ENOG5033C20">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_157232_0_0_4"/>
    <dbReference type="OMA" id="WFEMVAG"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="20"/>
            <end position="42"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="54"/>
            <end position="73"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX35111.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="80" mass="8639" checksum="B63304604129A010" modified="2008-01-15" version="1">MSLPDTSSSRSASRKADIELLIKGVTCAVIGLVILLAPQFMAPGGIVQMMAQSYLVGWFALLLGTAFIVLFVVRRSKARR</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="76" xmlns="http://uniprot.org/uniprot">
    <accession>A9BVX9</accession>
    <name>A9BVX9_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">3-hydroxybutyrate dehydrogenase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_2854</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the short-chain dehydrogenases/reductases (SDR) family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX35492.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012204702.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_2854"/>
    <dbReference type="PRIDE" id="A9BVX9"/>
    <dbReference type="EnsemblBacteria" id="ABX35492">
        <property type="protein sequence ID" value="ABX35492"/>
        <property type="gene ID" value="Daci_2854"/>
    </dbReference>
    <dbReference type="GeneID" id="60687117"/>
    <dbReference type="KEGG" id="dac:Daci_2854"/>
    <dbReference type="eggNOG" id="COG1028">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_010194_1_0_4"/>
    <dbReference type="OMA" id="GICEFKE"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003858">
        <property type="term" value="F:3-hydroxybutyrate dehydrogenase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011294">
        <property type="entry name" value="3-OHbutyrate_DH"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036291">
        <property type="entry name" value="NAD(P)-bd_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020904">
        <property type="entry name" value="Sc_DH/Rdtase_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002347">
        <property type="entry name" value="SDR_fam"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00106">
        <property type="entry name" value="adh_short"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00081">
        <property type="entry name" value="GDHRDH"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00080">
        <property type="entry name" value="SDRFAMILY"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51735">
        <property type="entry name" value="SSF51735"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01963">
        <property type="entry name" value="PHB_DH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00061">
        <property type="entry name" value="ADH_SHORT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="RuleBase" id="RU000363"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX35492.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="264" mass="27601" checksum="ED32C977120FFB2D" modified="2008-01-15" version="1">MLKGKTALVTGSTSGIGLGIAKALARQGANIVLNGFGDVDGPRAEVLAAGQAAGAQVAYHGADMSRVADIEDMVQYSVRNFGQIDILVNNAGIQHVARVEDFPPERWDSIIAINLSSAFHTSRLVLPMMQAADGGKGWGRIINVASVHGLVGSAQKSAYVAAKHGIVGLTKVTALENATSGITCNAICPGWVLTPLVQKQVDAKAEQHGISNEEAKKLLLGEKEPSMQFTTPEELGELAVFFCSPAAANVRGVAWNMDGGWAAQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2021-09-29" version="43" xmlns="http://uniprot.org/uniprot">
    <accession>A9BW50</accession>
    <name>A9BW50_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Daci_3228</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="2" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX35866.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012205066.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_3228"/>
    <dbReference type="EnsemblBacteria" id="ABX35866">
        <property type="protein sequence ID" value="ABX35866"/>
        <property type="gene ID" value="Daci_3228"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_3228"/>
    <dbReference type="eggNOG" id="COG1925">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_129016_0_0_4"/>
    <dbReference type="OMA" id="LQVEAMT"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ABX35866.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="165" mass="18911" checksum="8CEB6894C9CDF553" modified="2008-01-15" version="1">MRVLFLDIDGVLNSTRTSVAHGGYPHELTHTEAFDWVAIKLLQRLCDSSGIQVVLSSAWRLTHDYKDVAKAFDLPIIDRTPSLLGCRGDEIQHWLDNHVEVTNYAILDDDPDMLESQEPHFIHTRGSEGMTWADFSRLCQIFGESPFSGEVRQRNWRETKLAWEA</sequence>
</entry>
<entry dataset="Swiss-Prot" created="2009-03-24" modified="2022-08-03" version="86" xmlns="http://uniprot.org/uniprot">
    <accession>A9BWH9</accession>
    <name>LEXA_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">LexA repressor</fullName>
            <ecNumber evidence="1">3.4.21.88</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="1" type="primary">lexA</name>
        <name type="ordered locus">Daci_3565</name>
    </gene>
    <organism>
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference key="1">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain>DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="1">Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>Hydrolysis of Ala-|-Gly bond in repressor LexA.</text>
            <dbReference type="EC" id="3.4.21.88"/>
        </reaction>
    </comment>
    <comment type="subunit">
        <text evidence="1">Homodimer.</text>
    </comment>
    <comment type="similarity">
        <text evidence="1">Belongs to the peptidase S24 family.</text>
    </comment>
    <dbReference type="EC" id="3.4.21.88" evidence="1"/>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX36199.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012205399.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A9BWH9"/>
    <dbReference type="SMR" id="A9BWH9"/>
    <dbReference type="STRING" id="398578.Daci_3565"/>
    <dbReference type="MEROPS" id="S24.001"/>
    <dbReference type="PRIDE" id="A9BWH9"/>
    <dbReference type="EnsemblBacteria" id="ABX36199">
        <property type="protein sequence ID" value="ABX36199"/>
        <property type="gene ID" value="Daci_3565"/>
    </dbReference>
    <dbReference type="GeneID" id="60687774"/>
    <dbReference type="KEGG" id="dac:Daci_3565"/>
    <dbReference type="eggNOG" id="COG1974">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_066192_45_3_4"/>
    <dbReference type="OMA" id="HVWLLPH"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004252">
        <property type="term" value="F:serine-type endopeptidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006281">
        <property type="term" value="P:DNA repair"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006260">
        <property type="term" value="P:DNA replication"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0045892">
        <property type="term" value="P:negative regulation of transcription, DNA-templated"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006508">
        <property type="term" value="P:proteolysis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009432">
        <property type="term" value="P:SOS response"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd06529">
        <property type="entry name" value="S24_LexA-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00015">
        <property type="entry name" value="LexA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006200">
        <property type="entry name" value="LexA"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR039418">
        <property type="entry name" value="LexA-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036286">
        <property type="entry name" value="LexA/Signal_pep-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006199">
        <property type="entry name" value="LexA_DNA-bd_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006197">
        <property type="entry name" value="Peptidase_S24_LexA"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015927">
        <property type="entry name" value="Peptidase_S24_S26A/B/C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036390">
        <property type="entry name" value="WH_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01726">
        <property type="entry name" value="LexA_DNA_bind"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00717">
        <property type="entry name" value="Peptidase_S24"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00726">
        <property type="entry name" value="LEXASERPTASE"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46785">
        <property type="entry name" value="SSF46785"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51306">
        <property type="entry name" value="SSF51306"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00498">
        <property type="entry name" value="lexA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword id="KW-0068">Autocatalytic cleavage</keyword>
    <keyword id="KW-0227">DNA damage</keyword>
    <keyword id="KW-0234">DNA repair</keyword>
    <keyword id="KW-0235">DNA replication</keyword>
    <keyword id="KW-0238">DNA-binding</keyword>
    <keyword id="KW-0378">Hydrolase</keyword>
    <keyword id="KW-1185">Reference proteome</keyword>
    <keyword id="KW-0678">Repressor</keyword>
    <keyword id="KW-0742">SOS response</keyword>
    <keyword id="KW-0804">Transcription</keyword>
    <keyword id="KW-0805">Transcription regulation</keyword>
    <feature type="chain" id="PRO_1000089560" description="LexA repressor">
        <location>
            <begin position="1"/>
            <end position="224"/>
        </location>
    </feature>
    <feature type="DNA-binding region" description="H-T-H motif" evidence="1">
        <location>
            <begin position="31"/>
            <end position="51"/>
        </location>
    </feature>
    <feature type="active site" description="For autocatalytic cleavage activity" evidence="1">
        <location>
            <position position="142"/>
        </location>
    </feature>
    <feature type="active site" description="For autocatalytic cleavage activity" evidence="1">
        <location>
            <position position="179"/>
        </location>
    </feature>
    <feature type="site" description="Cleavage; by autolysis" evidence="1">
        <location>
            <begin position="107"/>
            <end position="108"/>
        </location>
    </feature>
    <evidence type="ECO:0000255" key="1">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00015"/>
        </source>
    </evidence>
    <sequence length="224" mass="24217" checksum="68265B671A3B9AD4" modified="2008-01-15" version="1">MLDHPKLTARQQQILDLIQAAISRTGAPPTRAEIANTLGFKSANAAEEHLQALARKGVIELVSGTSRGIRLRTDTVRNINAARGTSFGLPLSALAPLMLPLVGRVAAGSPILAQEHIDQTYSVEPSLFQTRPDYLLRVRGMSMRDAGIMDGDLLAVQSAHEARNGQIVVARLGDEVTVKRLRRTTQGVELLPENPDYPVIRVAPEEAFAIEGLAVGLIRNSMSM</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="65" xmlns="http://uniprot.org/uniprot">
    <accession>A9BWJ3</accession>
    <name>A9BWJ3_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="1">PEP phosphonomutase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Daci_3579</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="2" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX36213.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012205413.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_3579"/>
    <dbReference type="PRIDE" id="A9BWJ3"/>
    <dbReference type="EnsemblBacteria" id="ABX36213">
        <property type="protein sequence ID" value="ABX36213"/>
        <property type="gene ID" value="Daci_3579"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_3579"/>
    <dbReference type="eggNOG" id="COG2513">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_027389_3_2_4"/>
    <dbReference type="OMA" id="VKDLAPW"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003824">
        <property type="term" value="F:catalytic activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd00377">
        <property type="entry name" value="ICL_PEPM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.20.20.60">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR039556">
        <property type="entry name" value="ICL/PEPM"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015813">
        <property type="entry name" value="Pyrv/PenolPyrv_Kinase-like_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR040442">
        <property type="entry name" value="Pyrv_Kinase-like_dom_sf"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51621">
        <property type="entry name" value="SSF51621"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ABX36213.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="286" mass="30873" checksum="C3DAD51E4D1004AA" modified="2008-01-15" version="1">MNTKQQLKALAEARRGVLVPGAFNALSARVVADLGFEAIYVTGAGVTNMWFGLPDQAFMGLTDIADHTARIRDAVDLPLIVDADTGFGNALNTYHAVRTLERAGADCIQIEDQISPKRCGHFNGKEVISTDEMLGKIKAAVDARRDQGTLIMARTDACATQGFEAAVERAQRFAEAGADILFVEAVTQADEIRALPQLLSTPQLMNMVIGGKTPITDAGELADLGYGLVLYANAALQGAVAGMQKALGQLRNERRVDENPAVVAPFAERQRLVNKPFWDALEKKYE</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="37" xmlns="http://uniprot.org/uniprot">
    <accession>A9BWL0</accession>
    <name>A9BWL0_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Daci_3906</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="2" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX36537.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_3906"/>
    <dbReference type="PRIDE" id="A9BWL0"/>
    <dbReference type="EnsemblBacteria" id="ABX36537">
        <property type="protein sequence ID" value="ABX36537"/>
        <property type="gene ID" value="Daci_3906"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_3906"/>
    <dbReference type="HOGENOM" id="CLU_2896645_0_0_4"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ABX36537.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="62" mass="7513" checksum="B8832BCF1F903179" modified="2008-01-15" version="1">MFFCIFAITPFQYYSMPKLGYTRCNILEDHPTIYFTDWVKNPDWCVRGKSREWVNEQARLGK</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="65" xmlns="http://uniprot.org/uniprot">
    <accession>A9BWM9</accession>
    <name>A9BWM9_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Alpha/beta hydrolase fold</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_3925</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX36556.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012205750.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_3925"/>
    <dbReference type="ESTHER" id="delas-a9bwm9">
        <property type="family name" value="CFTR-inhibitory-factor_Cif"/>
    </dbReference>
    <dbReference type="PRIDE" id="A9BWM9"/>
    <dbReference type="EnsemblBacteria" id="ABX36556">
        <property type="protein sequence ID" value="ABX36556"/>
        <property type="gene ID" value="Daci_3925"/>
    </dbReference>
    <dbReference type="GeneID" id="60688207"/>
    <dbReference type="KEGG" id="dac:Daci_3925"/>
    <dbReference type="eggNOG" id="COG2267">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_020336_7_1_4"/>
    <dbReference type="OMA" id="HGWPQHH"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016787">
        <property type="term" value="F:hydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.1820">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029058">
        <property type="entry name" value="AB_hydrolase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000073">
        <property type="entry name" value="AB_hydrolase_1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000639">
        <property type="entry name" value="Epox_hydrolase-like"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00561">
        <property type="entry name" value="Abhydrolase_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00412">
        <property type="entry name" value="EPOXHYDRLASE"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53474">
        <property type="entry name" value="SSF53474"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="AB hydrolase-1" evidence="1">
        <location>
            <begin position="41"/>
            <end position="281"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF00561"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX36556.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="298" mass="32922" checksum="689E2BD4DC90F2C4" modified="2008-01-15" version="1">MNAFTSNALRKQEDQACEFSHDYVRIDGRRIHCITAGQGAPVLLIPGWPQTWYAWRHVMQALAAQGFQAIAVDPPGTGFSDRPDTGYDTGSIALTLHRTMLALGHERYQVAGHDVGMWVAYALASDQPQAVQSLALTEAVIPGLAPEPSIFAPPEQNIFLWHFMFNQLADLPETLIAGRERAYLEFMFNRWSLRRDRVAVDVYVDAYAAPGGLRGGFAYYRAIPETIRQNRERALRPLAMPVLAIGAEHATADAPLATLRGHADDLSGVIVPGCGHFIMEEAAEPFIAELLPFLQRTL</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="83" xmlns="http://uniprot.org/uniprot">
    <accession>A9BWW7</accession>
    <name>A9BWW7_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Transcriptional regulator, AsnC family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ordered locus">Daci_4321</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="6" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX36952.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012206124.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_4321"/>
    <dbReference type="PRIDE" id="A9BWW7"/>
    <dbReference type="EnsemblBacteria" id="ABX36952">
        <property type="protein sequence ID" value="ABX36952"/>
        <property type="gene ID" value="Daci_4321"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_4321"/>
    <dbReference type="eggNOG" id="COG1522">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_091233_0_3_4"/>
    <dbReference type="OMA" id="YEEFLRH"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043565">
        <property type="term" value="F:sequence-specific DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006355">
        <property type="term" value="P:regulation of transcription, DNA-templated"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="CDD" id="cd00090">
        <property type="entry name" value="HTH_ARSR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011991">
        <property type="entry name" value="ArsR-like_HTH"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000485">
        <property type="entry name" value="AsnC-type_HTH_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011008">
        <property type="entry name" value="Dimeric_a/b-barrel"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019888">
        <property type="entry name" value="Tscrpt_reg_AsnC-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019887">
        <property type="entry name" value="Tscrpt_reg_AsnC/Lrp_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019885">
        <property type="entry name" value="Tscrpt_reg_HTH_AsnC-type_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036390">
        <property type="entry name" value="WH_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01037">
        <property type="entry name" value="AsnC_trans_reg"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13404">
        <property type="entry name" value="HTH_AsnC-type"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00033">
        <property type="entry name" value="HTHASNC"/>
    </dbReference>
    <dbReference type="SMART" id="SM00344">
        <property type="entry name" value="HTH_ASNC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46785">
        <property type="entry name" value="SSF46785"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54909">
        <property type="entry name" value="SSF54909"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00519">
        <property type="entry name" value="HTH_ASNC_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50956">
        <property type="entry name" value="HTH_ASNC_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0804">Transcription</keyword>
    <keyword evidence="1" id="KW-0805">Transcription regulation</keyword>
    <feature type="domain" description="HTH asnC-type" evidence="4">
        <location>
            <begin position="1"/>
            <end position="62"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023015"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023163"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="PROSITE" id="PS50956"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="ABX36952.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="151" mass="16716" checksum="E3703B7B56E32E07" modified="2008-01-15" version="1">MDILDRKILSALQANARASLQEIGAAVGLSASPCWARIKKLEEAGVIEGYTVRLNPLALGLGDTVLVQVTLDSHSDNTLEKFGEMLATIPEVVEAHLVSGEYDYLLRVVVKDTRDYERLLREKLYKIKGIRHSQSSFVLRTLKKADLPLGV</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="62" xmlns="http://uniprot.org/uniprot">
    <accession>A9BXD4</accession>
    <name>A9BXD4_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Type IV pilus assembly protein PilM</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_5581</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX38210.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012207379.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_5581"/>
    <dbReference type="PRIDE" id="A9BXD4"/>
    <dbReference type="EnsemblBacteria" id="ABX38210">
        <property type="protein sequence ID" value="ABX38210"/>
        <property type="gene ID" value="Daci_5581"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_5581"/>
    <dbReference type="eggNOG" id="COG4972">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_050686_1_0_4"/>
    <dbReference type="OMA" id="EKVQDRQ"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051301">
        <property type="term" value="P:cell division"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043129">
        <property type="entry name" value="ATPase_NBD"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005883">
        <property type="entry name" value="PilM"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003494">
        <property type="entry name" value="SHS2_FtsA"/>
    </dbReference>
    <dbReference type="Pfam" id="PF11104">
        <property type="entry name" value="PilM_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF019169">
        <property type="entry name" value="PilM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00842">
        <property type="entry name" value="FtsA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53067">
        <property type="entry name" value="SSF53067"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01175">
        <property type="entry name" value="pilM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="FtsA" evidence="1">
        <location>
            <begin position="15"/>
            <end position="183"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="SMART" id="SM00842"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX38210.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="359" mass="38952" checksum="EE9A3794A1FF1789" modified="2008-01-15" version="1">MIAMGSLFSRQPAPLLGIDISSSSAKLVELSRAKSGELLLERCAIEPLERGWITDGNIEKFDEVAEAVRRLVKKSGTRTKNVAMALPASAVITKKISLPDGMSEQELEVQVESEANQYIPFSLDEVSLDFCVIGPSSNSPGDVDVLIAASRREKVQDRQGLAEAAGLRPTVIDIEPHASRMAAARLIERLPNQGNNALVALFELGAMTTSMQILRDDEVLYDRDQAFGGAQLTQLIARQYGFSLEEAESKKRSGELPEDYASAVLKPFVQSMTQEVSRALQFFFTSTPHNRIDHILLAGGSAPLSGLSEAITQQTGFACSLANPFDGMEVGSGVRLKRMSREAPAYLTACGLAMRRFVS</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="58" xmlns="http://uniprot.org/uniprot">
    <accession>A9BXE9</accession>
    <name>A9BXE9_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Extracellular solute-binding protein family 1</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_5596</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX38225.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012207394.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_5596"/>
    <dbReference type="PRIDE" id="A9BXE9"/>
    <dbReference type="EnsemblBacteria" id="ABX38225">
        <property type="protein sequence ID" value="ABX38225"/>
        <property type="gene ID" value="Daci_5596"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_5596"/>
    <dbReference type="eggNOG" id="COG1653">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_031285_9_0_4"/>
    <dbReference type="OMA" id="ESSMTYY"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006059">
        <property type="entry name" value="SBP"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01547">
        <property type="entry name" value="SBP_bac_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="1">
        <location>
            <begin position="1"/>
            <end position="22"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5002733144" evidence="1">
        <location>
            <begin position="23"/>
            <end position="436"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX38225.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="436" mass="47509" checksum="6D4D2B8CBA017A9A" modified="2008-01-15" version="1">MHSLLKASLTWAMATAAAGALAGTELVIATVNNGHMIEMQKLTPRFEKAHPDITLKWVTLEEGVLRQRVTTDIATKGGQFDVMTVGIYEVPIWSKKGWLQPIATDAAYDAADLLPTIREGLSYEGKLYASPFYGEGSILMYRKDLADKAGFQMPDKPTWEQVREFASRVHDPKAGVYGICLRGKPGWGDNMALITTMANTFGGQWFDMQWRPQIDTPAWKKAVGFYVDLMKAYGPPGASANSFNENLALFNEGKCGAWVDASIAASFVSDPKQSKVADKVAYAAAPVASTPKGSTWLWTWNLAIPSSSKKADAAQVFVKWATSREYVQLVAQEHGWRAVPTGTRQSTYANAEFQKVAGFAAAEKRAIDSVSLTDATEPKSPYAGVQYVAIPEFQAIGIAVGQQMSAALSGKVTVEQALSTSQTLADREMRKSGYYK</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-01-19" version="50" xmlns="http://uniprot.org/uniprot">
    <accession>A9BXP0</accession>
    <name>A9BXP0_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_5688</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX38316.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012207485.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_5688"/>
    <dbReference type="EnsemblBacteria" id="ABX38316">
        <property type="protein sequence ID" value="ABX38316"/>
        <property type="gene ID" value="Daci_5688"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_5688"/>
    <dbReference type="eggNOG" id="ENOG5032UKC">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_113338_0_0_4"/>
    <dbReference type="OMA" id="VAFWAMR"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="14"/>
            <end position="35"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX38316.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="157" mass="15607" checksum="6699718A2CC913F9" modified="2008-01-15" version="1">MVTLSLNRGQAGTWHVKAATFVLWLLAAGVVAFWAMRLGNGGAGAPVPPAPAEPLQVDAPALAQALGGVAAAQGAVAPAAAPVVSRYALVGVLAGRDSGGGAAVIAVGNQPAKPFRVGRAVEDGVVLQSVSGREARLGPRVDGPASITLQIPLPDKR</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="62" xmlns="http://uniprot.org/uniprot">
    <accession>A9BXR7</accession>
    <name>A9BXR7_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Fusaric acid resistance protein conserved region</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_5715</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX38343.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012207512.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_5715"/>
    <dbReference type="PRIDE" id="A9BXR7"/>
    <dbReference type="EnsemblBacteria" id="ABX38343">
        <property type="protein sequence ID" value="ABX38343"/>
        <property type="gene ID" value="Daci_5715"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_5715"/>
    <dbReference type="eggNOG" id="COG1289">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_013927_1_2_4"/>
    <dbReference type="OMA" id="HRDPWMA"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0022857">
        <property type="term" value="F:transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006726">
        <property type="entry name" value="PHBA_efflux_AaeB/fusaric-R"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04632">
        <property type="entry name" value="FUSC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="73"/>
            <end position="91"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="97"/>
            <end position="114"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="121"/>
            <end position="143"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="155"/>
            <end position="173"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="413"/>
            <end position="430"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="436"/>
            <end position="454"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="484"/>
            <end position="508"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX38343.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="661" mass="70932" checksum="9FF23A63D187441C" modified="2008-01-15" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="66" xmlns="http://uniprot.org/uniprot">
    <accession>A9BXT0</accession>
    <name>A9BXT0_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">5-oxoprolinase subunit A</fullName>
            <shortName evidence="1">5-OPase subunit A</shortName>
            <ecNumber evidence="1">3.5.2.9</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="1">5-oxoprolinase (ATP-hydrolyzing) subunit A</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="1" type="primary">pxpA</name>
        <name evidence="3" type="ordered locus">Daci_5728</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="4" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="1">Catalyzes the cleavage of 5-oxoproline to form L-glutamate coupled to the hydrolysis of ATP to ADP and inorganic phosphate.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>5-oxo-L-proline + ATP + 2 H2O = ADP + H(+) + L-glutamate + phosphate</text>
            <dbReference type="Rhea" id="RHEA:10348"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:29985"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:43474"/>
            <dbReference type="ChEBI" id="CHEBI:58402"/>
            <dbReference type="ChEBI" id="CHEBI:456216"/>
            <dbReference type="EC" id="3.5.2.9"/>
        </reaction>
    </comment>
    <comment type="subunit">
        <text evidence="1">Forms a complex composed of PxpA, PxpB and PxpC.</text>
    </comment>
    <comment type="similarity">
        <text evidence="1">Belongs to the LamB/PxpA family.</text>
    </comment>
    <dbReference type="EC" id="3.5.2.9" evidence="1"/>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX38356.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012207525.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_5728"/>
    <dbReference type="PRIDE" id="A9BXT0"/>
    <dbReference type="EnsemblBacteria" id="ABX38356">
        <property type="protein sequence ID" value="ABX38356"/>
        <property type="gene ID" value="Daci_5728"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_5728"/>
    <dbReference type="eggNOG" id="COG1540">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_069535_0_0_4"/>
    <dbReference type="OMA" id="PHGELYF"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0017168">
        <property type="term" value="F:5-oxoprolinase (ATP-hydrolyzing) activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005975">
        <property type="term" value="P:carbohydrate metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00691">
        <property type="entry name" value="PxpA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000160">
        <property type="entry name" value="GGDEF_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011330">
        <property type="entry name" value="Glyco_hydro/deAcase_b/a-brl"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005501">
        <property type="entry name" value="LamB/YcsF/PxpA-like"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30292">
        <property type="entry name" value="PTHR30292"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03746">
        <property type="entry name" value="LamB_YcsF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF88713">
        <property type="entry name" value="SSF88713"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50887">
        <property type="entry name" value="GGDEF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="1" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="1" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="1" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="GGDEF" evidence="2">
        <location>
            <begin position="180"/>
            <end position="252"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00691"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS50887"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ABX38356.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="252" mass="26523" checksum="D7752B6E11C0EC2E" modified="2008-01-15" version="1">MKIDLNSDLGESLGGWRMGDDAAMLDIVSSANVACGFHAGDPAGILETLKAARERGAMVGAHVSYPDLVGFGRRNMDVASADLVAGVIYQIGALQGLARVAGTEVRYVKPHGALYNTIAHDRRQATDVITAMRAIDPSLVLVALAGSPLIDWARDAGLTVVAEAFADRGYTPEGTLVSRRDPGAVLHDVDQIAARMLSLVRDGVVEAVDGSLVRIAADSICVHGDSPGAVAIARHLRERFEQEGVRISSFVG</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="72" xmlns="http://uniprot.org/uniprot">
    <accession>A9BYA5</accession>
    <name>A9BYA5_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="6">Methyl-accepting chemotaxis sensory transducer</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ordered locus">Daci_1600</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="7" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the methyl-accepting chemotaxis (MCP) protein family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX34244.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012203529.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_1600"/>
    <dbReference type="PRIDE" id="A9BYA5"/>
    <dbReference type="EnsemblBacteria" id="ABX34244">
        <property type="protein sequence ID" value="ABX34244"/>
        <property type="gene ID" value="Daci_1600"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_1600"/>
    <dbReference type="eggNOG" id="COG0840">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_000445_107_16_4"/>
    <dbReference type="OMA" id="MYTVDTP"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004888">
        <property type="term" value="F:transmembrane signaling receptor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006935">
        <property type="term" value="P:chemotaxis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0007165">
        <property type="term" value="P:signal transduction"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004090">
        <property type="entry name" value="Chemotax_Me-accpt_rcpt"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003660">
        <property type="entry name" value="HAMP_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR024478">
        <property type="entry name" value="HlyB_4HB_MCP"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004089">
        <property type="entry name" value="MCPsignal_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12729">
        <property type="entry name" value="4HB_MCP_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00672">
        <property type="entry name" value="HAMP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00015">
        <property type="entry name" value="MCPsignal"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00260">
        <property type="entry name" value="CHEMTRNSDUCR"/>
    </dbReference>
    <dbReference type="SMART" id="SM00304">
        <property type="entry name" value="HAMP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00283">
        <property type="entry name" value="MA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50111">
        <property type="entry name" value="CHEMOTAXIS_TRANSDUC_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50885">
        <property type="entry name" value="HAMP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-0472">Membrane</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0807">Transducer</keyword>
    <keyword evidence="3" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="3" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="3">
        <location>
            <begin position="12"/>
            <end position="32"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="3">
        <location>
            <begin position="186"/>
            <end position="210"/>
        </location>
    </feature>
    <feature type="domain" description="HAMP" evidence="5">
        <location>
            <begin position="211"/>
            <end position="263"/>
        </location>
    </feature>
    <feature type="domain" description="Methyl-accepting transducer" evidence="4">
        <location>
            <begin position="268"/>
            <end position="497"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00029447"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00284"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="PROSITE" id="PS50111"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="PROSITE" id="PS50885"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="ABX34244.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="535" mass="57286" checksum="130CE9B72048D196" modified="2008-01-15" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="47" xmlns="http://uniprot.org/uniprot">
    <accession>A9BYI9</accession>
    <name>A9BYI9_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ordered locus">Daci_1892</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="5" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Periplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the UPF0065 (bug) family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX34532.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012203817.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_1892"/>
    <dbReference type="PRIDE" id="A9BYI9"/>
    <dbReference type="EnsemblBacteria" id="ABX34532">
        <property type="protein sequence ID" value="ABX34532"/>
        <property type="gene ID" value="Daci_1892"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_1892"/>
    <dbReference type="eggNOG" id="COG3181">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_045683_0_2_4"/>
    <dbReference type="OMA" id="GIRWATT"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0042597">
        <property type="term" value="C:periplasmic space"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.190.150">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005064">
        <property type="entry name" value="BUG"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR042100">
        <property type="entry name" value="Bug_dom1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR42928">
        <property type="entry name" value="PTHR42928"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03401">
        <property type="entry name" value="TctC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF017082">
        <property type="entry name" value="YflP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="3">
        <location>
            <begin position="1"/>
            <end position="28"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5002732659" evidence="3">
        <location>
            <begin position="29"/>
            <end position="309"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004418"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00006987"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="ABX34532.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="309" mass="31824" checksum="9CD4469918F2534A" modified="2008-01-15" version="1">MRAPQGTDTGRRALLAAGACALAWPAQALPARPAWPGASVRIVVAYPAGGVSDMVARALAEQLAQQWGTAVIVDNRPGTSGTVALELLARSAPDGRTLVFAAATAVGLASASVTPVAGVMRTPMLLVGTSALKAADFEGMLAEARGMPGGIRWATTGEGTTGHAVLQRIEQATRIPIVHVPYKGGGQQLNDALAGHFELLSTNVAPLQLQALRAGRLKALAVGAPQRLAALPDVPTLAQLGHAQANLDSLFGLFAPPQMAPELAQRINAAVAQALRAPAIRSRLEAASNQPFEGSATEFAQQVMREAGR</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-01-19" version="34" xmlns="http://uniprot.org/uniprot">
    <accession>A9BYM2</accession>
    <name>A9BYM2_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Daci_1925</name>
        <name evidence="2" type="ordered locus">Daci_4117</name>
    </gene>
    <organism evidence="1 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
            <strain evidence="1">SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="1" key="3">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX34565.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX36748.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012203850.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_1925"/>
    <dbReference type="EnsemblBacteria" id="ABX34565">
        <property type="protein sequence ID" value="ABX34565"/>
        <property type="gene ID" value="Daci_1925"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="ABX36748">
        <property type="protein sequence ID" value="ABX36748"/>
        <property type="gene ID" value="Daci_4117"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_1925"/>
    <dbReference type="KEGG" id="dac:Daci_4117"/>
    <dbReference type="HOGENOM" id="CLU_2568194_0_0_4"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ABX34565.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX36748.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="81" mass="8698" checksum="7250A0C83737794D" modified="2008-01-15" version="1">MAKAKTEFRVMLSPLTGTVYAGRVTDLGSGNYKSATLRHDVTQDFHRLTIEYAQSKGGAYEIVGGGETYDVTVTKRAPAAA</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="65" xmlns="http://uniprot.org/uniprot">
    <accession>A9BYX6</accession>
    <name>A9BYX6_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uroporphyrinogen III synthase HEM4</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_2231</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX34871.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012204154.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_2231"/>
    <dbReference type="PRIDE" id="A9BYX6"/>
    <dbReference type="EnsemblBacteria" id="ABX34871">
        <property type="protein sequence ID" value="ABX34871"/>
        <property type="gene ID" value="Daci_2231"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_2231"/>
    <dbReference type="eggNOG" id="COG1587">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_011276_9_4_4"/>
    <dbReference type="OMA" id="HPRIAQA"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004852">
        <property type="term" value="F:uroporphyrinogen-III synthase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0033014">
        <property type="term" value="P:tetrapyrrole biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd06578">
        <property type="entry name" value="HemD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.10090">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036108">
        <property type="entry name" value="4pyrrol_syn_uPrphyn_synt_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003754">
        <property type="entry name" value="4pyrrol_synth_uPrphyn_synth"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02602">
        <property type="entry name" value="HEM4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF69618">
        <property type="entry name" value="SSF69618"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HEM4" evidence="1">
        <location>
            <begin position="17"/>
            <end position="250"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF02602"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX34871.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="269" mass="28556" checksum="9178013CF97A9527" modified="2008-01-15" version="1">MPPRILVTRPAHDAAAWVDALQARGLPAQPLALMAIGPCRDAATQQALQAARNALREGPGYRAVMFVSGNAVQHFFGTDPARLPASTRAWTPGPGTAQALLALGIAPAQIDGPPPDAAQFESETLWQRVHDQIHAGDRVLIVRGDSQAGAPRTVPATAGAGRDWLAARLREAGAQVEMLAVYQRELPAWDAAQTALARQAADDGSLWLLSSAESVANLQQLLPGQSWQKARALATHERIAAQARQLGFGYVKQCRPALEDVVASIESTP</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-01-19" version="39" xmlns="http://uniprot.org/uniprot">
    <accession>A9BZ60</accession>
    <name>A9BZ60_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Daci_2522</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="2" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX35160.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_2522"/>
    <dbReference type="EnsemblBacteria" id="ABX35160">
        <property type="protein sequence ID" value="ABX35160"/>
        <property type="gene ID" value="Daci_2522"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_2522"/>
    <dbReference type="eggNOG" id="COG0790">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_2154238_0_0_4"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.25.40.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011990">
        <property type="entry name" value="TPR-like_helical_dom_sf"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ABX35160.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="111" mass="12955" checksum="1B42B43784AB3563" modified="2008-01-15" version="1">MTNIANSDQSSGSIYHLNPNEILNLKKKAEIDSKASYRLYEYYTLSEYNEEESMTWLEKAALLGHELAQFNYVKHFYDNGNKKKANSLAKKWKDNAEINKLFLEKNPSNKK</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="69" xmlns="http://uniprot.org/uniprot">
    <accession>A9BZI0</accession>
    <name>A9BZI0_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">TPR repeat-containing protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_2942</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX35580.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012204790.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_2942"/>
    <dbReference type="PRIDE" id="A9BZI0"/>
    <dbReference type="EnsemblBacteria" id="ABX35580">
        <property type="protein sequence ID" value="ABX35580"/>
        <property type="gene ID" value="Daci_2942"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_2942"/>
    <dbReference type="eggNOG" id="COG0457">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_010496_0_0_4"/>
    <dbReference type="OMA" id="GVRYWFR"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.25.40.10">
        <property type="match status" value="3"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025137">
        <property type="entry name" value="NfrA_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011990">
        <property type="entry name" value="TPR-like_helical_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019734">
        <property type="entry name" value="TPR_repeat"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13283">
        <property type="entry name" value="NfrA_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00028">
        <property type="entry name" value="TPR"/>
        <property type="match status" value="8"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48452">
        <property type="entry name" value="SSF48452"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="NfrA_C" evidence="1">
        <location>
            <begin position="821"/>
            <end position="949"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF13283"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX35580.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="955" mass="101813" checksum="3B5037E1A465B8D8" modified="2008-01-15" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-05-25" version="69" xmlns="http://uniprot.org/uniprot">
    <accession>A9BZU6</accession>
    <name>A9BZU6_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="7">Major facilitator superfamily MFS_1</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ordered locus">Daci_3366</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="8" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX36004.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012205204.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_3366"/>
    <dbReference type="EnsemblBacteria" id="ABX36004">
        <property type="protein sequence ID" value="ABX36004"/>
        <property type="gene ID" value="Daci_3366"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_3366"/>
    <dbReference type="eggNOG" id="COG0477">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_000960_28_3_4"/>
    <dbReference type="OMA" id="LDIIWRM"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0022857">
        <property type="term" value="F:transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.1250.20">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011701">
        <property type="entry name" value="MFS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020846">
        <property type="entry name" value="MFS_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036259">
        <property type="entry name" value="MFS_trans_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07690">
        <property type="entry name" value="MFS_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF103473">
        <property type="entry name" value="SSF103473"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50850">
        <property type="entry name" value="MFS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4 5" id="KW-0472">Membrane</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 5" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="3 5" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="24"/>
            <end position="46"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="90"/>
            <end position="108"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="120"/>
            <end position="139"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="151"/>
            <end position="170"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="176"/>
            <end position="195"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="216"/>
            <end position="234"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="246"/>
            <end position="262"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="282"/>
            <end position="307"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="319"/>
            <end position="341"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="348"/>
            <end position="367"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="445"/>
            <end position="464"/>
        </location>
    </feature>
    <feature type="domain" description="MFS" evidence="6">
        <location>
            <begin position="24"/>
            <end position="470"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="PROSITE" id="PS50850"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="ABX36004.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="474" mass="48880" checksum="9009FBDFE85BD802" modified="2008-01-15" version="1">MSLAPAAEAAPVHDGLPSGPRGQAMLVIILGLTLSVLDSTLVNLALPAMARELQASSAHTLWVVNSYQLASLVLLLPLAALGERLGYRRVYLVGMLVFSVASLAAMLATSLPTLVAARALQGLGAAGVMSVNAALVRLIYPRALLGRGMAVNSLVVATASMAGPSVAAAILSVASWPWLFAANLPLGLFTLWLGRRALPANAVAGHAGARLSPLDVLLNILMFSLIFLGGEQLGVRAGGADSSLPSGWWLLGAGLLVGAWYVRRQWRLPAPLLPVDLLRIPVFALSMCGSVSAFCAQMLAYLALPFLLLESHGMSPIEAGLLITAWPLATVLTAPIAGRLIGRYADGLLGGIGMAMFAFGLWALAAMPDAPSTVDMVWRMLLAGSGFALYQSPNNHTIVTTAPLARSGAAGGMLSSARLTGQTLGAVVLATIFTFAGGHGGHAEIVALAVAGCFAAMAGVFSLLRVRTAPVPKH</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="67" xmlns="http://uniprot.org/uniprot">
    <accession>A9BZY7</accession>
    <name>A9BZY7_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Twitching motility protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Daci_3615</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="4" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the GSP E family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX36249.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012205449.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_3615"/>
    <dbReference type="PRIDE" id="A9BZY7"/>
    <dbReference type="EnsemblBacteria" id="ABX36249">
        <property type="protein sequence ID" value="ABX36249"/>
        <property type="gene ID" value="Daci_3615"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_3615"/>
    <dbReference type="eggNOG" id="COG5008">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_013446_4_0_4"/>
    <dbReference type="OMA" id="RGQVHEI"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006321">
        <property type="entry name" value="PilT/PilU"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001482">
        <property type="entry name" value="T2SS/T4SS"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00437">
        <property type="entry name" value="T2SSE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01420">
        <property type="entry name" value="pilT_fam"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00662">
        <property type="entry name" value="T2SP_E"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="T2SP_E" evidence="2">
        <location>
            <begin position="194"/>
            <end position="208"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00006611"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS00662"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ABX36249.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="389" mass="42472" checksum="621B799482DB5D8B" modified="2008-01-15" version="1">MGTMERILRLMGEKQASDVYLAVNAPALIKINGECVPINNQLLPPDAPRSLLAEIVPAERLQELDETGELNMGVPLRGVGRFRVSAMHQRGSCAVVIRFIAQHIPAMDTLNLPPVLGELIMQKRGLLLVVGSTGSGKSTTLASMIDARNEKLTGHILTIEDPIEYQFRNKRSIVNQREVGSDTASLQIALKNALRQAPDVILIGEIRDRETMSSAMGFAQSGHLCLATLHANNSYHALNRILSFFPEEIRPTMLGELSAALKGVISQRLVRTVDGGRMPAVEVMLNTKLIADLIERGNFSGVKEAMEKSMAEGSQTFEEALAQLVRSGRIDRAEALAFADSPTNLMWRLENDVVKASHAAPSSQFAELATPGEDDMPSFTEIMLEVKPN</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="68" xmlns="http://uniprot.org/uniprot">
    <accession>A9C0A7</accession>
    <name>A9C0A7_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Cobyrinic acid ac-diamide synthase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ordered locus">Daci_4042</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="5" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX36673.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_4042"/>
    <dbReference type="PRIDE" id="A9C0A7"/>
    <dbReference type="EnsemblBacteria" id="ABX36673">
        <property type="protein sequence ID" value="ABX36673"/>
        <property type="gene ID" value="Daci_4042"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_4042"/>
    <dbReference type="eggNOG" id="COG0455">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_037612_0_0_4"/>
    <dbReference type="OMA" id="FKVAKNN"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd02038">
        <property type="entry name" value="FlhG-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025669">
        <property type="entry name" value="AAA_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR033875">
        <property type="entry name" value="FlhG"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025501">
        <property type="entry name" value="MinD_FleN"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13614">
        <property type="entry name" value="AAA_31"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF003092">
        <property type="entry name" value="MinD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="1" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="AAA_31" evidence="3">
        <location>
            <begin position="41"/>
            <end position="206"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF13614"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="ABX36673.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="294" mass="31039" checksum="79A59404C03D0ACA" modified="2008-01-15" version="1">MWTPKMDSADSQVVSDNAIPHPSLPAAVPMSDAVRAKPRGHIIAVTSGKGGVGKTFVSANLAAALTRHGLKVLVLDADLGLANLDVVLNLYPKVTLHDVFTGRSSLEEAILPAPGGYSVLLAGSGMIEYSRLTPEIRQQFTHTIETLAPRYDIVLLDTGAGISDVVLFSVSMATEVLVIATPEPTSLTDAYAAIKVLAIQQKRQQIRLAINQAARPGDGRAITGQLQQVLNRFVNTASGEPLRLTHLGDIPSDPAVREAVMRRQLLLQSMPGAPASLAVAQLANKIKALLVSGG</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="40" xmlns="http://uniprot.org/uniprot">
    <accession>A9C0F9</accession>
    <name>A9C0F9_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_4094</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX36725.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012205917.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_4094"/>
    <dbReference type="PRIDE" id="A9C0F9"/>
    <dbReference type="EnsemblBacteria" id="ABX36725">
        <property type="protein sequence ID" value="ABX36725"/>
        <property type="gene ID" value="Daci_4094"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_4094"/>
    <dbReference type="HOGENOM" id="CLU_2632284_0_0_4"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="49"/>
            <end position="77"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX36725.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="77" mass="8198" checksum="9CBD703CCF081D29" modified="2008-01-15" version="1">MKKITNLTNSPFDLQGVDGLVRLPAFDSVKGEFSGEYLDLLEASMAVSVEDTDAEPEGQAAEQGVSEPKAKRAKKAA</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="81" xmlns="http://uniprot.org/uniprot">
    <accession>A9C0G5</accession>
    <name>A9C0G5_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">Histidine kinase</fullName>
            <ecNumber evidence="2">2.7.13.3</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="6" type="ordered locus">Daci_4407</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="7" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>ATP + protein L-histidine = ADP + protein N-phospho-L-histidine.</text>
            <dbReference type="EC" id="2.7.13.3"/>
        </reaction>
    </comment>
    <dbReference type="EC" id="2.7.13.3" evidence="2"/>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX37038.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012206210.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_4407"/>
    <dbReference type="PRIDE" id="A9C0G5"/>
    <dbReference type="EnsemblBacteria" id="ABX37038">
        <property type="protein sequence ID" value="ABX37038"/>
        <property type="gene ID" value="Daci_4407"/>
    </dbReference>
    <dbReference type="GeneID" id="60689051"/>
    <dbReference type="KEGG" id="dac:Daci_4407"/>
    <dbReference type="eggNOG" id="COG2205">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_000445_89_3_4"/>
    <dbReference type="OMA" id="WDRGKGI"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000155">
        <property type="term" value="F:phosphorelay sensor kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd00082">
        <property type="entry name" value="HisKA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.565.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003594">
        <property type="entry name" value="HATPase_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036890">
        <property type="entry name" value="HATPase_C_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005467">
        <property type="entry name" value="His_kinase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003661">
        <property type="entry name" value="HisK_dim/P"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036097">
        <property type="entry name" value="HisK_dim/P_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004358">
        <property type="entry name" value="Sig_transdc_His_kin-like_C"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02518">
        <property type="entry name" value="HATPase_c"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00512">
        <property type="entry name" value="HisKA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00344">
        <property type="entry name" value="BCTRLSENSOR"/>
    </dbReference>
    <dbReference type="SMART" id="SM00387">
        <property type="entry name" value="HATPase_c"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00388">
        <property type="entry name" value="HisKA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47384">
        <property type="entry name" value="SSF47384"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55874">
        <property type="entry name" value="SSF55874"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50109">
        <property type="entry name" value="HIS_KIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="6" id="KW-0418">Kinase</keyword>
    <keyword evidence="3" id="KW-0597">Phosphoprotein</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="6" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Histidine kinase" evidence="5">
        <location>
            <begin position="58"/>
            <end position="277"/>
        </location>
    </feature>
    <feature type="coiled-coil region" evidence="4">
        <location>
            <begin position="3"/>
            <end position="30"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00000085"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00012438"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022553"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="PROSITE" id="PS50109"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="ABX37038.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="286" mass="31790" checksum="95ED9033E1530BFB" modified="2008-01-15" version="1">MNEDDLKAELELCRAEIRSLREELDETNRGVVALYGELDVQAEKLRKATELKSHFLSYMSHEFRTPIGAIRSNARLLLDHVDGPLTTEQTRQVGFIQETAAEFSEMVNDLLDLAKIEAGRLEISPGWFEMMDLFAALRGMFKAMADNVELSLVFEEPGDLPRFYTDNRKLSQILRNFISNALKFTPQGEIKVSAELVGDMLVKFSVADTGIGIASEFHDAIFNDFTQVDSPIQKRLRGTGLGLALSKQLAQLLGGWVEVQSALGEGSTFSVIVPAHLPVDTKDLKA</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="64" xmlns="http://uniprot.org/uniprot">
    <accession>A9C0M5</accession>
    <name>A9C0M5_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="3">AMP-dependent synthetase and ligase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Daci_4468</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="4" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX37098.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012206270.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_4468"/>
    <dbReference type="PRIDE" id="A9C0M5"/>
    <dbReference type="EnsemblBacteria" id="ABX37098">
        <property type="protein sequence ID" value="ABX37098"/>
        <property type="gene ID" value="Daci_4468"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_4468"/>
    <dbReference type="eggNOG" id="COG0365">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_000022_59_10_4"/>
    <dbReference type="OMA" id="GPVGCRY"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016874">
        <property type="term" value="F:ligase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.300.30">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.12780">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025110">
        <property type="entry name" value="AMP-bd_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045851">
        <property type="entry name" value="AMP-bd_C_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020845">
        <property type="entry name" value="AMP-binding_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000873">
        <property type="entry name" value="AMP-dep_Synth/Lig"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR042099">
        <property type="entry name" value="ANL_N_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00501">
        <property type="entry name" value="AMP-binding"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13193">
        <property type="entry name" value="AMP-binding_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00455">
        <property type="entry name" value="AMP_BINDING"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-0436">Ligase</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="AMP-binding" evidence="1">
        <location>
            <begin position="49"/>
            <end position="449"/>
        </location>
    </feature>
    <feature type="domain" description="AMP-binding_C" evidence="2">
        <location>
            <begin position="458"/>
            <end position="536"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF00501"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF13193"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ABX37098.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="546" mass="58985" checksum="9617B193D46F89BD" modified="2008-01-15" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-01-19" version="46" xmlns="http://uniprot.org/uniprot">
    <accession>A9C0Q7</accession>
    <name>A9C0Q7_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_4501</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX37130.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012206300.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_4501"/>
    <dbReference type="EnsemblBacteria" id="ABX37130">
        <property type="protein sequence ID" value="ABX37130"/>
        <property type="gene ID" value="Daci_4501"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_4501"/>
    <dbReference type="eggNOG" id="ENOG5032YEQ">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_179357_0_0_4"/>
    <dbReference type="OMA" id="CMFFAIK"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="6"/>
            <end position="29"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="49"/>
            <end position="71"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX37130.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="77" mass="8643" checksum="FBC047632FBAD7E9" modified="2008-01-15" version="1">MIDWVPIVFVTFKVLVFGTAMFFAIKWHYDQGKKKGASRRELLIASGKIVAVFTLLLLCVLLFTFGLATMLGMDLSL</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="61" xmlns="http://uniprot.org/uniprot">
    <accession>A9C0R4</accession>
    <name>A9C0R4_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Daci_4508</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="2" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX37137.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012206307.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_4508"/>
    <dbReference type="PRIDE" id="A9C0R4"/>
    <dbReference type="EnsemblBacteria" id="ABX37137">
        <property type="protein sequence ID" value="ABX37137"/>
        <property type="gene ID" value="Daci_4508"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_4508"/>
    <dbReference type="eggNOG" id="COG0425">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_054203_0_0_4"/>
    <dbReference type="OMA" id="ARHIEVF"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016491">
        <property type="term" value="F:oxidoreductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.620.20">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009078">
        <property type="entry name" value="Ferritin-like_SF"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012348">
        <property type="entry name" value="RNR-like"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47240">
        <property type="entry name" value="SSF47240"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ABX37137.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="422" mass="45241" checksum="9403A51D216DF500" modified="2008-01-15" version="1">MAMPDSDSGALHARALPASTLPVIDLQGLGFDAGAHLLVKHALAALPVGGQLRVTGSAPGWQAQLSGWCSDQGHGLRWEDGAGAAQAMAIVARGGAQAGRWRGAAQTGRSDARSGGDAVAAQAQPSWGLAARGAQVEAGAPAFHFRLSNKLQVWTDSAADLYAQAVAAQWNADTDIDWCDAPELPAPVEDAIVQLMTYMVENENAALLVPARFLGQLHPHYRELQAALAIQVADEARHIDVFTRRIRRHGREPALSTAGGQASLKSLLDETDFSVAGFLLSVLGEGTFVHLLQFLQTEAPDPLTRQICRLAARDEARHVALGMSHLLYRLQHEPGFQHQLAQAVEQRFDNLAGTSGLNEEVFDALILIAAGALTPEALARGAARVQQLMRDMADGRFSKLLRLGFERGHAERLASLHTRNFM</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-05-25" version="55" xmlns="http://uniprot.org/uniprot">
    <accession>A9C0X1</accession>
    <name>A9C0X1_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Endoribonuclease L-PSP</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_5806</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX38434.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012207603.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_5806"/>
    <dbReference type="EnsemblBacteria" id="ABX38434">
        <property type="protein sequence ID" value="ABX38434"/>
        <property type="gene ID" value="Daci_5806"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_5806"/>
    <dbReference type="eggNOG" id="COG0251">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_104845_1_0_4"/>
    <dbReference type="OMA" id="VGHEPRY"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="CDD" id="cd02199">
        <property type="entry name" value="YjgF_YER057c_UK114_like_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.1330.40">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013813">
        <property type="entry name" value="Endoribo_LPSP/chorism_mut-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035959">
        <property type="entry name" value="RutC-like_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF14588">
        <property type="entry name" value="YjgF_endoribonc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55298">
        <property type="entry name" value="SSF55298"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="YjgF_endoribonc" evidence="1">
        <location>
            <begin position="26"/>
            <end position="154"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF14588"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX38434.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="156" mass="16261" checksum="53E705A190F0D9FA" modified="2008-01-15" version="1">MTADERFAQAALELGHRFDGEIKIGGNYSPVVRDGQQLFVSGQIPRVGDEVLYVGTVGAGIDLASARTAAAICAMRALAFVQRAAGSLDAVRAVARITVYVRSAPDFTQQSEVADGASDLIARVLGPVGAHTRTSVGVLQLPKGAAVELDLIARVD</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="89" xmlns="http://uniprot.org/uniprot">
    <accession>A9C175</accession>
    <name>A9C175_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Xanthine dehydrogenase, small subunit</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Daci_5910</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="4" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX38538.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012207707.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_5910"/>
    <dbReference type="PRIDE" id="A9C175"/>
    <dbReference type="EnsemblBacteria" id="ABX38538">
        <property type="protein sequence ID" value="ABX38538"/>
        <property type="gene ID" value="Daci_5910"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_5910"/>
    <dbReference type="eggNOG" id="COG4630">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_001681_9_0_4"/>
    <dbReference type="OMA" id="AFHKIAK"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051537">
        <property type="term" value="F:2 iron, 2 sulfur cluster binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0071949">
        <property type="term" value="F:FAD binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004854">
        <property type="term" value="F:xanthine dehydrogenase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004855">
        <property type="term" value="F:xanthine oxidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.10.20.30">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.43.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.465.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002888">
        <property type="entry name" value="2Fe-2S-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036884">
        <property type="entry name" value="2Fe-2S-bd_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036010">
        <property type="entry name" value="2Fe-2S_ferredoxin-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006058">
        <property type="entry name" value="2Fe2S_fd_BS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012675">
        <property type="entry name" value="Beta-grasp_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005107">
        <property type="entry name" value="CO_DH_flav_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036683">
        <property type="entry name" value="CO_DH_flav_C_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016166">
        <property type="entry name" value="FAD-bd_PCMH"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036318">
        <property type="entry name" value="FAD-bd_PCMH-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016167">
        <property type="entry name" value="FAD-bd_PCMH_sub1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016169">
        <property type="entry name" value="FAD-bd_PCMH_sub2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002346">
        <property type="entry name" value="Mopterin_DH_FAD-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012175">
        <property type="entry name" value="Xanth_DH_ssu_bac"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014307">
        <property type="entry name" value="Xanthine_DH_ssu"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03450">
        <property type="entry name" value="CO_deh_flav_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00941">
        <property type="entry name" value="FAD_binding_5"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01799">
        <property type="entry name" value="Fer2_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF036557">
        <property type="entry name" value="XdhA_RC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM01092">
        <property type="entry name" value="CO_deh_flav_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47741">
        <property type="entry name" value="SSF47741"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54292">
        <property type="entry name" value="SSF54292"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55447">
        <property type="entry name" value="SSF55447"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56176">
        <property type="entry name" value="SSF56176"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR02963">
        <property type="entry name" value="xanthine_xdhA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00197">
        <property type="entry name" value="2FE2S_FER_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51387">
        <property type="entry name" value="FAD_PCMH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0274">FAD</keyword>
    <keyword evidence="1" id="KW-0285">Flavoprotein</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="FAD-binding PCMH-type" evidence="2">
        <location>
            <begin position="226"/>
            <end position="406"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022827"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS51387"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ABX38538.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="537" mass="57591" checksum="8C6171596AD3C056" modified="2008-01-15" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="59" xmlns="http://uniprot.org/uniprot">
    <accession>A9C180</accession>
    <name>A9C180_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Ribosomal RNA large subunit methyltransferase J</fullName>
            <ecNumber evidence="1">2.1.1.266</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="1">23S rRNA (adenine(2030)-N6)-methyltransferase</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="1">23S rRNA m6A2030 methyltransferase</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="1" type="primary">rlmJ</name>
        <name evidence="2" type="ordered locus">Daci_5915</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="1">Specifically methylates the adenine in position 2030 of 23S rRNA.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>adenosine(2030) in 23S rRNA + S-adenosyl-L-methionine = H(+) + N(6)-methyladenosine(2030) in 23S rRNA + S-adenosyl-L-homocysteine</text>
            <dbReference type="Rhea" id="RHEA:43736"/>
            <dbReference type="Rhea" id="RHEA-COMP:10668"/>
            <dbReference type="Rhea" id="RHEA-COMP:10669"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:57856"/>
            <dbReference type="ChEBI" id="CHEBI:59789"/>
            <dbReference type="ChEBI" id="CHEBI:74411"/>
            <dbReference type="ChEBI" id="CHEBI:74449"/>
            <dbReference type="EC" id="2.1.1.266"/>
        </reaction>
    </comment>
    <comment type="subunit">
        <text evidence="1">Monomer.</text>
    </comment>
    <comment type="similarity">
        <text evidence="1">Belongs to the RlmJ family.</text>
    </comment>
    <dbReference type="EC" id="2.1.1.266" evidence="1"/>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX38543.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012207712.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_5915"/>
    <dbReference type="PRIDE" id="A9C180"/>
    <dbReference type="EnsemblBacteria" id="ABX38543">
        <property type="protein sequence ID" value="ABX38543"/>
        <property type="gene ID" value="Daci_5915"/>
    </dbReference>
    <dbReference type="GeneID" id="60690276"/>
    <dbReference type="KEGG" id="dac:Daci_5915"/>
    <dbReference type="eggNOG" id="COG2961">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_061769_1_0_4"/>
    <dbReference type="OMA" id="TYAIWYP"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0036307">
        <property type="term" value="F:23S rRNA (adenine(2030)-N(6))-methyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003723">
        <property type="term" value="F:RNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0070475">
        <property type="term" value="P:rRNA base methylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.150">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00934">
        <property type="entry name" value="23SrRNA_methyltr_J"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007473">
        <property type="entry name" value="RlmJ"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029063">
        <property type="entry name" value="SAM-dependent_MTases_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37426">
        <property type="entry name" value="PTHR37426"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04378">
        <property type="entry name" value="RsmJ"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53335">
        <property type="entry name" value="SSF53335"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="1" id="KW-0489">Methyltransferase</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0694">RNA-binding</keyword>
    <keyword evidence="1" id="KW-0698">rRNA processing</keyword>
    <keyword evidence="1" id="KW-0949">S-adenosyl-L-methionine</keyword>
    <keyword evidence="1" id="KW-0808">Transferase</keyword>
    <feature type="region of interest" description="S-adenosyl-L-methionine binding" evidence="1">
        <location>
            <begin position="150"/>
            <end position="151"/>
        </location>
    </feature>
    <feature type="active site" description="Proton acceptor" evidence="1">
        <location>
            <position position="171"/>
        </location>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <position position="19"/>
        </location>
        <ligand>
            <name>S-adenosyl-L-methionine</name>
            <dbReference type="ChEBI" id="CHEBI:59789"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <position position="42"/>
        </location>
        <ligand>
            <name>S-adenosyl-L-methionine</name>
            <dbReference type="ChEBI" id="CHEBI:59789"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <position position="102"/>
        </location>
        <ligand>
            <name>S-adenosyl-L-methionine</name>
            <dbReference type="ChEBI" id="CHEBI:59789"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <position position="122"/>
        </location>
        <ligand>
            <name>S-adenosyl-L-methionine</name>
            <dbReference type="ChEBI" id="CHEBI:59789"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <position position="171"/>
        </location>
        <ligand>
            <name>S-adenosyl-L-methionine</name>
            <dbReference type="ChEBI" id="CHEBI:59789"/>
        </ligand>
    </feature>
    <feature type="site" description="Interaction with substrate rRNA" evidence="1">
        <location>
            <position position="4"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00934"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX38543.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="290" mass="32080" checksum="175AF2D60CE22E81" modified="2008-01-15" version="1">MFSYRHAFHAGNHADVLKHTVLIATLQYLLQKDAALTVLDTHAGAGLYRLDGDYANKSGESADGIMRLAQAKEAELAPVLQAYLATVRSFNQGAQLRNYPGSPFIIQSLLRVQERDKLKVFELHPTDMRSLVGNIAQLEAGRQVAVLHEDGFEGIKKFLPPPSRRALVLCDPSYELKSDYAKVLDMAADSLKRFATGTYAVWYPIIPRPEAHDLPRRLKTMTTKAGKSWLHVELTVKSNKTSERGGLPASGMFLINPPFNLKEQLKPAMPQLVKLLGQDENAAFTLESGG</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="76" xmlns="http://uniprot.org/uniprot">
    <accession>A9C1B3</accession>
    <name>A9C1B3_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="7">Major facilitator superfamily MFS_1</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ordered locus">Daci_5948</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="8" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX38576.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012207745.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_5948"/>
    <dbReference type="PRIDE" id="A9C1B3"/>
    <dbReference type="EnsemblBacteria" id="ABX38576">
        <property type="protein sequence ID" value="ABX38576"/>
        <property type="gene ID" value="Daci_5948"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_5948"/>
    <dbReference type="eggNOG" id="COG0477">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_001265_39_5_4"/>
    <dbReference type="OMA" id="LWIRNGM"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0022857">
        <property type="term" value="F:transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.1250.20">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011701">
        <property type="entry name" value="MFS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020846">
        <property type="entry name" value="MFS_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005828">
        <property type="entry name" value="MFS_sugar_transport-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036259">
        <property type="entry name" value="MFS_trans_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07690">
        <property type="entry name" value="MFS_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00083">
        <property type="entry name" value="Sugar_tr"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF103473">
        <property type="entry name" value="SSF103473"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50850">
        <property type="entry name" value="MFS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4 5" id="KW-0472">Membrane</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 5" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="3 5" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="50"/>
            <end position="74"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="86"/>
            <end position="104"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="110"/>
            <end position="130"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="151"/>
            <end position="177"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="183"/>
            <end position="205"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="252"/>
            <end position="271"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="277"/>
            <end position="294"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="306"/>
            <end position="326"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="332"/>
            <end position="352"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="373"/>
            <end position="394"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="400"/>
            <end position="423"/>
        </location>
    </feature>
    <feature type="domain" description="MFS" evidence="6">
        <location>
            <begin position="13"/>
            <end position="442"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="PROSITE" id="PS50850"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="ABX38576.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="442" mass="47726" checksum="90E5D71076792190" modified="2008-01-15" version="1">MTTATDPRVIRKVVTSALIGATIEWYDFFLYGVVAGIVFSKLYFPSDDPLISTLLAYTTFAVGFVTRPLGGVIFGHFGDRVGRKSILVVTLMIMGVSTFLIGLLPTHAQIGVAAPILLLLLRVAQGIGLGGEWGGAVLMAYEYAPKEKRGFYASLPQVGLAIGLFMASGVVALLSWLCTEEQFMAWGWRVAFLISGLMVAVGMYIRLHVKETPEFAAVKARNAETAIPFMDMMRRYPGNVLKGMGARYIDGVFFNVFGVFSISYLTSTLQISRTDALIGVMVAAVVMCFTIPLFGRLSDHLGRSRVYLWGSLITAVSAFPAFWLMADSGGNMLLIWIAIVVPFGILYAAVYGPEAALFCDLFDAKVRYTGISFVYQFSGIFASGITPIIATALVKTAGGSPWLVCLYVVFAGAVSAWCAWAIGRDGQGARAFRPLGNSRAGL</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="74" xmlns="http://uniprot.org/uniprot">
    <accession>A9C1D1</accession>
    <name>A9C1D1_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="6">3-hydroxyacyl-CoA dehydrogenase NAD-binding</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ordered locus">Daci_5966</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="7" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the 3-hydroxyacyl-CoA dehydrogenase family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX38594.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012207763.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_5966"/>
    <dbReference type="PRIDE" id="A9C1D1"/>
    <dbReference type="EnsemblBacteria" id="ABX38594">
        <property type="protein sequence ID" value="ABX38594"/>
        <property type="gene ID" value="Daci_5966"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_5966"/>
    <dbReference type="eggNOG" id="COG1250">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_009834_2_0_4"/>
    <dbReference type="OMA" id="DGLALRW"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0070403">
        <property type="term" value="F:NAD+ binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016616">
        <property type="term" value="F:oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0044248">
        <property type="term" value="P:cellular catabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006631">
        <property type="term" value="P:fatty acid metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:1901575">
        <property type="term" value="P:organic substance catabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.1040.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR022694">
        <property type="entry name" value="3-OHacyl-CoA_DH"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006180">
        <property type="entry name" value="3-OHacyl-CoA_DH_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006176">
        <property type="entry name" value="3-OHacyl-CoA_DH_NAD-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006108">
        <property type="entry name" value="3HC_DH_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008927">
        <property type="entry name" value="6-PGluconate_DH-like_C_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013328">
        <property type="entry name" value="6PGD_dom2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036291">
        <property type="entry name" value="NAD(P)-bd_dom_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00725">
        <property type="entry name" value="3HCDH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02737">
        <property type="entry name" value="3HCDH_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF000105">
        <property type="entry name" value="HCDH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48179">
        <property type="entry name" value="SSF48179"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51735">
        <property type="entry name" value="SSF51735"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00067">
        <property type="entry name" value="3HCDH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2" id="KW-0520">NAD</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="3HCDH_N" evidence="5">
        <location>
            <begin position="12"/>
            <end position="181"/>
        </location>
    </feature>
    <feature type="domain" description="3HCDH" evidence="4">
        <location>
            <begin position="185"/>
            <end position="283"/>
        </location>
    </feature>
    <feature type="site" description="Important for catalytic activity" evidence="3">
        <location>
            <position position="138"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00009463"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023027"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="PIRSR" id="PIRSR000105-1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="Pfam" id="PF00725"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="Pfam" id="PF02737"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="ABX38594.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="320" mass="33884" checksum="8ECEBA38412552D6" modified="2008-01-15" version="1">MHSSSPRNARTVVVGGGTMGADVAVVLARGGALVTVVDPGAARRELLLQHIAIELATAGFARCASQVSVCAALEDVAWDGVALVVECITERLDAKQALFAELEAHAPADAVLASNSSGFPISAIAGGLPTAQRMLGLHFFMPAHLVPLVEVVLGERSDPALGQWLHAFMRGCGSVPVLVKKDKPGFLANRMQHALSREAFALIDEGIASPEDVDAAVRFGFGFRFLAAGPVLQRDHAGIEVHCAAAATMYPTLSNTDVPAQALRDRVARGDLGMKTGKGFFDWPEDRRLAERARYDALLRQGLALLASELPVPERAQDTP</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="62" xmlns="http://uniprot.org/uniprot">
    <accession>A9C1K4</accession>
    <name>A9C1K4_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Peptidase M20</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Daci_6039</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="4" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX38667.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_6039"/>
    <dbReference type="PRIDE" id="A9C1K4"/>
    <dbReference type="EnsemblBacteria" id="ABX38667">
        <property type="protein sequence ID" value="ABX38667"/>
        <property type="gene ID" value="Daci_6039"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_6039"/>
    <dbReference type="eggNOG" id="COG0624">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_029469_0_0_4"/>
    <dbReference type="OMA" id="EWDASII"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016787">
        <property type="term" value="F:hydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002933">
        <property type="entry name" value="Peptidase_M20"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011650">
        <property type="entry name" value="Peptidase_M20_dimer"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07687">
        <property type="entry name" value="M20_dimer"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01546">
        <property type="entry name" value="Peptidase_M20"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="M20_dimer" evidence="2">
        <location>
            <begin position="223"/>
            <end position="390"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF07687"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ABX38667.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="508" mass="54439" checksum="02EAC83FAC910BD0" modified="2008-01-15" version="1">MTRGPAMNARTPSQLLQPAAALDQISRSWDDRIVPALTEYIAIPAKSPMFAPDWEQQGHLETVLRNAADWVLAQRVAGLTLEIVRQPGRTPVLFFEVEGTQDKAASSPTVLMYGHLDKQPEFDGWRSDLGPWTPKYENGKLYGRGGADDGYAVYASIAAVQELKRQGVPHPRILGLIETCEESGSRDLLPYVDALRPRLGDVGLVICLDSGAGNYDQLWLTTSLRGMASGTLKVEILTEGVHSGDASGVVPSSFRILRQVLDRLEDSKTGRLLPASFHCEVPAERMAQMRDTAAILGEETYARFPWAHYDCGGSTLFALPTTTDPVQALVKRTWEPTLSVTGAEGLPALQDAGNVLRPYTAFKLSLRLPPLVDAAACVQEMKALLEDNAPYQARVTWQGLSGASGWNAPAMDGWFEDALNAASQAHFGASCGYIGQGGTIPLMNMLSQGFPKAQMMVCGVLGPKSNAHGPNEFLHVPYAKKLTAAVAQVIAAMAGAQAAAEAGAAGVA</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="59" xmlns="http://uniprot.org/uniprot">
    <accession>A9C277</accession>
    <name>A9C277_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Iron-containing alcohol dehydrogenase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Daci_3383</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="4" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX36021.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012205221.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_3383"/>
    <dbReference type="PRIDE" id="A9C277"/>
    <dbReference type="EnsemblBacteria" id="ABX36021">
        <property type="protein sequence ID" value="ABX36021"/>
        <property type="gene ID" value="Daci_3383"/>
    </dbReference>
    <dbReference type="GeneID" id="60687635"/>
    <dbReference type="KEGG" id="dac:Daci_3383"/>
    <dbReference type="eggNOG" id="COG1454">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_007207_0_0_4"/>
    <dbReference type="OMA" id="IRFGPGC"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016616">
        <property type="term" value="F:oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001670">
        <property type="entry name" value="ADH_Fe/GldA"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018211">
        <property type="entry name" value="ADH_Fe_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR039697">
        <property type="entry name" value="Alcohol_dehydrogenase_Fe"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11496">
        <property type="entry name" value="PTHR11496"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00465">
        <property type="entry name" value="Fe-ADH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00913">
        <property type="entry name" value="ADH_IRON_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Fe-ADH" evidence="2">
        <location>
            <begin position="9"/>
            <end position="369"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023002"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF00465"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ABX36021.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="378" mass="39854" checksum="C1A06163EFA3D475" modified="2008-01-15" version="1">MAFINYVTQIQFDFGAVRLLRQECERVGITRPLIVTDQGVKAAGVLQKALDALGGMPHAVFDQTPSNPTEAAVRAAAAIYQEQRCDGLIAVGGGSAIDCAKGVAIAATHEGPLSHYATIEGGSPRISERVAPLIAVPTTSGTGSEVARGAIIIVDDHRKLGFHSWHLVPRAAICDPELTYGLPAMLTAATGMDAIAHCMETFMAAAFNPPADGIALDGLTRGWAHIERATRNGQDAEARRQLMSASMQGAMAFQKGLGCVHSLSHSLGGVNPRLHHGTLNAMFLPAVVRFNAEAESVRAEQRLQRMAHAMGLDSGSDIPEAIRDMNARLGLPTGLAAMGVERAQFAAVIGGALKDHCHGTNPRLASADDYEQMLATSL</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="44" xmlns="http://uniprot.org/uniprot">
    <accession>A9C2C1</accession>
    <name>A9C2C1_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_3427</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX36065.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012205265.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="PRIDE" id="A9C2C1"/>
    <dbReference type="EnsemblBacteria" id="ABX36065">
        <property type="protein sequence ID" value="ABX36065"/>
        <property type="gene ID" value="Daci_3427"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_3427"/>
    <dbReference type="HOGENOM" id="CLU_1341441_0_0_4"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009057">
        <property type="entry name" value="Homeobox-like_sf"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46689">
        <property type="entry name" value="SSF46689"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="145"/>
            <end position="177"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="145"/>
            <end position="169"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX36065.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="204" mass="22502" checksum="2ABBD62800E18F19" modified="2008-01-15" version="1">MDRQNTTLDDIASIIGFSATLRLSAWYGNGNNLYVPTTVEEGQVLVLLIGRSAAERLSQEFGGDHLAVPRIVSYDEDCRRQRVATMLSRGFSTREVSRIERVSERRIQQICRELEQVGIIAPLGPSAENDCWAPPGALQEKAEWEFSRKKPPGKRASEKCQEKGPQKKRGAKSQTSIIAGIETAKEAPVSTVIGAMVLQLHEPA</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="64" xmlns="http://uniprot.org/uniprot">
    <accession>A9C2K0</accession>
    <name>A9C2K0_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="7">Histone family protein nucleoid-structuring protein H-NS</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ordered locus">Daci_3717</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="8" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Cytoplasm</location>
            <location evidence="1">Nucleoid</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the histone-like protein H-NS family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX36349.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_3717"/>
    <dbReference type="PRIDE" id="A9C2K0"/>
    <dbReference type="EnsemblBacteria" id="ABX36349">
        <property type="protein sequence ID" value="ABX36349"/>
        <property type="gene ID" value="Daci_3717"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_3717"/>
    <dbReference type="eggNOG" id="COG2916">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_117503_5_0_4"/>
    <dbReference type="OMA" id="HWIAGAK"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009295">
        <property type="term" value="C:nucleoid"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030527">
        <property type="term" value="F:structural constituent of chromatin"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006355">
        <property type="term" value="P:regulation of transcription, DNA-templated"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027444">
        <property type="entry name" value="H-NS_C_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001801">
        <property type="entry name" value="Histone_HNS"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00816">
        <property type="entry name" value="Histone_HNS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00528">
        <property type="entry name" value="HNS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="4" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HNS" evidence="6">
        <location>
            <begin position="75"/>
            <end position="114"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="5">
        <location>
            <begin position="83"/>
            <end position="106"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004453"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00010610"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022490"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="SMART" id="SM00528"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="ABX36349.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="136" mass="14940" checksum="3F7A6E872DDCC855" modified="2008-01-15" version="1">MTLKTGMSRPNSPIIWLQKFRTPMTQSLKELLAAKAALDMEIAKARTSAADAALSKVQKLVTDFGFTQQQVFPYIPEKTSAPAKYRDPATGATWTGRGKPPNWIKDQDRDDFLIESKPEAAQGPFLAEMAAAAARN</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="30" xmlns="http://uniprot.org/uniprot">
    <accession>A9C2W2</accession>
    <name>A9C2W2_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Daci_4135</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="2" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX36766.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012205946.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_4135"/>
    <dbReference type="PRIDE" id="A9C2W2"/>
    <dbReference type="EnsemblBacteria" id="ABX36766">
        <property type="protein sequence ID" value="ABX36766"/>
        <property type="gene ID" value="Daci_4135"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_4135"/>
    <dbReference type="HOGENOM" id="CLU_2878439_0_0_4"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ABX36766.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="63" mass="6623" checksum="88617383A20C2CE1" modified="2008-01-15" version="1">MTTHTPAEIFGPADSDWNAKREQLQQAALLAAAELIAHTDAAGIDGLEGFGVSLSIRLTDTTN</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="48" xmlns="http://uniprot.org/uniprot">
    <accession>A9C2Y3</accession>
    <name>A9C2Y3_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Daci_4156</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="2" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX36787.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012205965.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_4156"/>
    <dbReference type="PRIDE" id="A9C2Y3"/>
    <dbReference type="EnsemblBacteria" id="ABX36787">
        <property type="protein sequence ID" value="ABX36787"/>
        <property type="gene ID" value="Daci_4156"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_4156"/>
    <dbReference type="eggNOG" id="COG4860">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_070054_0_0_4"/>
    <dbReference type="OMA" id="RRIRVQC"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ABX36787.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="270" mass="30140" checksum="3A685B22D8CB4ED4" modified="2008-01-15" version="1">MDRSLIKTLMPSLVAGHVPRNVRSFKYRVFDDQPQSSTLGFVIDPQPFDGKVVAASEDAIVVKLKPSEFAVLDPNLVTTVPSEGTKVHVQPYARRRFDGLRADTPEERTEMMSDGTPYTVKTHILGSAPAKLPIPEPQCMELGQLIEQLEEMPAPDGFRRITHMLVDAGAHDFTWVDPTPSRIIETPPAISFTVSTAKFAGQVTILYQPGSDTYAVELRRDGELVDRHDEVYFDMLGEVLERLIDDGRWRLIDVSVIGAETSRRRRAVPA</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="49" xmlns="http://uniprot.org/uniprot">
    <accession>A9C304</accession>
    <name>A9C304_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Putative secreted protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_4177</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX36808.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012205986.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_4177"/>
    <dbReference type="PRIDE" id="A9C304"/>
    <dbReference type="EnsemblBacteria" id="ABX36808">
        <property type="protein sequence ID" value="ABX36808"/>
        <property type="gene ID" value="Daci_4177"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_4177"/>
    <dbReference type="eggNOG" id="COG3064">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_041117_0_0_4"/>
    <dbReference type="OMA" id="SGGMQET"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR021207">
        <property type="entry name" value="Integr_conj_element_PFL4705"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR03752">
        <property type="entry name" value="conj_TIGR03752"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="77"/>
            <end position="128"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="173"/>
            <end position="199"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="85"/>
            <end position="99"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX36808.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="469" mass="49384" checksum="D33E49A9890A1F55" modified="2008-01-15" version="1">MRSNGLLKWLLIPVALLVLFVAIRLFSGGGASAPPVADGGGRLTPEEMKALGIEGDTPRDTVATLVAQVKQLRTELQTALSDNRSQREENQRLRQRENAIDQRISSALESERSNLRRDQQQAASARQQTEGLLADLQQRLDSIGGRGGGHADLPVGLGLRDGDEAGMEGGMRWVEPDDAKQSDGRGRSNGGISFPTSFGSAQSTLETTAQTVANAGARAAGVKSPTPVYTVPTNSTLMGSVAMTALIGRVPIDGTVNDPYPFKVLVGPDNLTANGIDIPDVAGAVFSGTASGDWTLSCVRGQVRSITFVFHDGTIRTIPEDREGNQQNNQQRDGLGWISDPHGIPCVSGERRSNAQQYLGTQALITAAGAGVASLIESDSGRASYVGADGSIGSVGISGQEAVGRILASGVQDMSSWVNKLYGQAFAAVYVQPGAKVAVHLEKPLAIDFDPEGRKVDHRAGESHALELE</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="58" xmlns="http://uniprot.org/uniprot">
    <accession>A9C376</accession>
    <name>A9C376_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Metal-dependent phosphohydrolase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_4558</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX37187.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012206357.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_4558"/>
    <dbReference type="PRIDE" id="A9C376"/>
    <dbReference type="EnsemblBacteria" id="ABX37187">
        <property type="protein sequence ID" value="ABX37187"/>
        <property type="gene ID" value="Daci_4558"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_4558"/>
    <dbReference type="eggNOG" id="COG4639">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_059923_1_0_4"/>
    <dbReference type="OMA" id="FVWNATN"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016787">
        <property type="term" value="F:hydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd00077">
        <property type="entry name" value="HDc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003607">
        <property type="entry name" value="HD/PDEase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006674">
        <property type="entry name" value="HD_domain"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01966">
        <property type="entry name" value="HD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HD" evidence="1">
        <location>
            <begin position="55"/>
            <end position="140"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF01966"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX37187.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="381" mass="41830" checksum="9C85080955ECF358" modified="2008-01-15" version="1">MTNWKQIQSLVPQPGADPDFAACLAAFPQLEQAKTTPQDPVYHAEGDVWTHTQMVVRELLADPGHAALTATERETVFLAALLHDVAKCSTTVVGEDGRIGQPGHSRRGALDARLMLWEAGAPVDQREAICRLIAVHQVPFFAFADSRRGLSPEFIVRELSWQVDLHLLTLLARADMRGRICPDIASVLVNIELVREFALEEGCLRTPRRFASAETAVRYFRGAQLHPDYALHEQAGSRAIVMCGLPASGKNTWVAAHHGDLPVVSFDDARTELGLRHGQNEGAAAHHAVDKAKALLRAGQPFVWNATHLSRQMRGKTVDLCLAYGARVELVHLEASRPTLLARNRARDTTLTNAALLTLLQRWDVPLPTEAHALSLVVNEG</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="81" xmlns="http://uniprot.org/uniprot">
    <accession>A9C380</accession>
    <name>A9C380_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Transcriptional regulator, LysR family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Daci_4562</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="4" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the LysR transcriptional regulatory family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX37191.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012206361.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_4562"/>
    <dbReference type="PRIDE" id="A9C380"/>
    <dbReference type="EnsemblBacteria" id="ABX37191">
        <property type="protein sequence ID" value="ABX37191"/>
        <property type="gene ID" value="Daci_4562"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_4562"/>
    <dbReference type="eggNOG" id="COG0583">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_039613_6_5_4"/>
    <dbReference type="OMA" id="RRAHLKV"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003700">
        <property type="term" value="F:DNA-binding transcription factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005119">
        <property type="entry name" value="LysR_subst-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000847">
        <property type="entry name" value="Tscrpt_reg_HTH_LysR"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036390">
        <property type="entry name" value="WH_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00126">
        <property type="entry name" value="HTH_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03466">
        <property type="entry name" value="LysR_substrate"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46785">
        <property type="entry name" value="SSF46785"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50931">
        <property type="entry name" value="HTH_LYSR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HTH lysR-type" evidence="2">
        <location>
            <begin position="2"/>
            <end position="59"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00009437"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS50931"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ABX37191.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="294" mass="32319" checksum="BAC0DD25A4B73721" modified="2008-01-15" version="1">MPSLRILRTFLAVAAEGSFTAAGQRVALTQVAVGLQMRTLENDLKRKLFARQGKLVTLNEQGRALVPIATQLVALYEQAKHGTRADAPLAGTVQFGSIVSALSQLVRATLELKRHHPAVDLHVVSGKSNRLIAQVENHELDAAVVVYNPAIKRPSLVWTPLYAEPMVLLAPRAARPAAPADMVERYPFIRFDRTEHTGELVERTLRRLRAKPQEFLELNSIETIVELVRDGMGVAMLPNLARHGWEGDPRLRVLPIAQTAESRQIALVQLRTAARAEIITAVGQQFVAALAVPD</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="55" xmlns="http://uniprot.org/uniprot">
    <accession>A9C390</accession>
    <name>A9C390_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Outer membrane efflux protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ordered locus">Daci_4572</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="5" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the outer membrane factor (OMF) (TC 1.B.17) family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX37201.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012206371.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_4572"/>
    <dbReference type="PRIDE" id="A9C390"/>
    <dbReference type="EnsemblBacteria" id="ABX37201">
        <property type="protein sequence ID" value="ABX37201"/>
        <property type="gene ID" value="Daci_4572"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_4572"/>
    <dbReference type="eggNOG" id="COG1538">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_012817_9_0_4"/>
    <dbReference type="OMA" id="IIYPLYM"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015562">
        <property type="term" value="F:efflux transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003423">
        <property type="entry name" value="OMP_efflux"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02321">
        <property type="entry name" value="OEP"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="3">
        <location>
            <begin position="1"/>
            <end position="28"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5002736121" evidence="3">
        <location>
            <begin position="29"/>
            <end position="483"/>
        </location>
    </feature>
    <feature type="coiled-coil region" evidence="2">
        <location>
            <begin position="391"/>
            <end position="449"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00007613"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="ABX37201.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="483" mass="51599" checksum="23AA809419C1E2F7" modified="2008-01-15" version="1">MFFPLLARPARLVPWLAALGMVAGAAQAAGEAPASQAAAAMSFVQARQALLQGSDQLAASAKAVESARLRRQGTQGLGGPSVAITGLGYRYSANADIDLDPARRTLDGVLGQLPPSVGPAIPSLPQLPTSYALQRKSTNASASLSLVWPLYLGGLSDAVRSGLDAATDEALADAASSSHALHSLLVQRYFGAQLAERAARLRERALEGVRMHDAAAQSMLKAGVISRLERLQARAALADAEQQARKSRDDADLAAAALARTVKAQRQVLPSTPLFVSSRPLPPLDGFVAAAQSHHPGLDKVQAKKRQAESLHDAQEALRRPQLLAFGSREVNTSGKPNWVAGVAVRWTLWDSIDRDALAASSQRKIEQAELTQAQALSDIALLVEKNWLGVEQARRQYQAQQAQEDLARELLRLREAGLREGTSTTLDLIDASLNLAKVQTQRAELANQYVQALAALLESTGQSEEFDRFMAQADIQIPPDAP</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="52" xmlns="http://uniprot.org/uniprot">
    <accession>A9BLE7</accession>
    <name>A9BLE7_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Daci_3800</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="4" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX36432.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_3800"/>
    <dbReference type="PRIDE" id="A9BLE7"/>
    <dbReference type="EnsemblBacteria" id="ABX36432">
        <property type="protein sequence ID" value="ABX36432"/>
        <property type="gene ID" value="Daci_3800"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_3800"/>
    <dbReference type="eggNOG" id="COG2220">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_758033_0_0_4"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.60.15.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036866">
        <property type="entry name" value="RibonucZ/Hydroxyglut_hydro"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56281">
        <property type="entry name" value="SSF56281"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="2">
        <location>
            <begin position="1"/>
            <end position="20"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5002732274" evidence="2">
        <location>
            <begin position="21"/>
            <end position="365"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="340"/>
            <end position="365"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ABX36432.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="365" mass="38426" checksum="5A39DF007C3D6B7D" modified="2008-01-15" version="1">MKKTAMTGLIAMGISAVAVTACGGAGEGASQPTEIRTTWFGISNFHYQIGSTGIILDGEVVNTGSAPSPSAVTKVLGALRKRGSVDYFLVGHEHGDHALQIPEYAKQTGKPIYAPAAVCQKVVAYGNPAAQCTTLKGGEVISLNENTTVRVVRWLHSIDCGEVGAGTAGVETFGFLITTKTPDKVLSVYASDSGAGGQELFYPRIVNKGLPNQVVYGSPFDNLSAAVKDAGISNIDLWQGGPESNVVAQARVIIPAFKVKYFQPHHLGTRATKVDGNSVGFSLEYGLHFPYLETEVPRLTDYLKSANAVAYNPVNYFDAWSLSKDGFKSQDNADVKAVYGLPATGPGPGKQGPNPRAGQLECTGA</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-05-25" version="83" xmlns="http://uniprot.org/uniprot">
    <accession>A9BLG4</accession>
    <name>A9BLG4_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="3">(2Fe-2S)-binding domain protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Daci_3818</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="4" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX36449.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_3818"/>
    <dbReference type="EnsemblBacteria" id="ABX36449">
        <property type="protein sequence ID" value="ABX36449"/>
        <property type="gene ID" value="Daci_3818"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_3818"/>
    <dbReference type="eggNOG" id="COG2080">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_052511_1_1_4"/>
    <dbReference type="OMA" id="FIKHDGY"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051537">
        <property type="term" value="F:2 iron, 2 sulfur cluster binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016491">
        <property type="term" value="F:oxidoreductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd00207">
        <property type="entry name" value="fer2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.10.20.30">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002888">
        <property type="entry name" value="2Fe-2S-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036884">
        <property type="entry name" value="2Fe-2S-bd_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036010">
        <property type="entry name" value="2Fe-2S_ferredoxin-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001041">
        <property type="entry name" value="2Fe-2S_ferredoxin-type"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006058">
        <property type="entry name" value="2Fe2S_fd_BS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012675">
        <property type="entry name" value="Beta-grasp_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006311">
        <property type="entry name" value="TAT_signal"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00111">
        <property type="entry name" value="Fer2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01799">
        <property type="entry name" value="Fer2_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47741">
        <property type="entry name" value="SSF47741"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54292">
        <property type="entry name" value="SSF54292"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00197">
        <property type="entry name" value="2FE2S_FER_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51085">
        <property type="entry name" value="2FE2S_FER_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51318">
        <property type="entry name" value="TAT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="2Fe-2S ferredoxin-type" evidence="2">
        <location>
            <begin position="85"/>
            <end position="161"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023002"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS51085"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ABX36449.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="253" mass="26836" checksum="985AE064B69F18D4" modified="2008-01-15" version="1">MSRTLDHHLQPGARPEPMLGVACSQQCARPTKSQHDGRPMEHNTQLSVSRRDLLIAGASTAAATAVPRSAGAQVQPPSIPEGVQLPVTLQVNGQEHRLDLDTRTTLLDALREHLHLTGTKKGCDHGQCGACTVLVNGRRVVSCLSLAVMNQGAAVTTIEGLGTPQSPHAMQAAFVRHDGFQCGYCTPGQICSAVGMLDEIKRGMPSHASEDIVAQPLVSAHELRERMSGNLCRCGAYSNIVDAITEVAGEGRT</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="54" xmlns="http://uniprot.org/uniprot">
    <accession>A9BLI9</accession>
    <name>A9BLI9_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Lipoprotein, putative</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Daci_3843</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="2" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX36474.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012205668.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_3843"/>
    <dbReference type="PRIDE" id="A9BLI9"/>
    <dbReference type="EnsemblBacteria" id="ABX36474">
        <property type="protein sequence ID" value="ABX36474"/>
        <property type="gene ID" value="Daci_3843"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_3843"/>
    <dbReference type="eggNOG" id="COG3521">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_1406061_0_0_4"/>
    <dbReference type="OMA" id="NIYKFWQ"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.40.4150">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017734">
        <property type="entry name" value="T6SS_SciN"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006311">
        <property type="entry name" value="TAT_signal"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038706">
        <property type="entry name" value="Type_VI_SciN-like_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37625">
        <property type="entry name" value="PTHR37625"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12790">
        <property type="entry name" value="T6SS-SciN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR03352">
        <property type="entry name" value="VI_chp_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51318">
        <property type="entry name" value="TAT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0449">Lipoprotein</keyword>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ABX36474.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="199" mass="22073" checksum="B6FD20D5BBA296F3" modified="2008-01-15" version="1">MWRSQEPQGSQGRRQALQTLGALGLGTAVVTGLAGCGSLNPLSRAPEVAPTAVPTAIFEVVADMDINPDREGIPKPVLLRIYELRASAAFDRAGFFDLQDKDDGQLGSDFVRREEFLVAPGQRQVIERKGNPDVRAFGLFAAYRDLERSTWRASAVAPNSVELRRRWWGMGSTEKLQPVRYQVHLTREEVTVRIQPASQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="61" xmlns="http://uniprot.org/uniprot">
    <accession>A9BLJ3</accession>
    <name>A9BLJ3_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Daci_3847</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="2" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX36478.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012205672.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_3847"/>
    <dbReference type="PRIDE" id="A9BLJ3"/>
    <dbReference type="EnsemblBacteria" id="ABX36478">
        <property type="protein sequence ID" value="ABX36478"/>
        <property type="gene ID" value="Daci_3847"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_3847"/>
    <dbReference type="eggNOG" id="COG3913">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_084145_1_0_4"/>
    <dbReference type="OMA" id="HATHKHS"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.1730.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017748">
        <property type="entry name" value="TagF"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038225">
        <property type="entry name" value="TagF_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF09867">
        <property type="entry name" value="TagF_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF029287">
        <property type="entry name" value="UCP029287"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR03373">
        <property type="entry name" value="VI_minor_4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ABX36478.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="234" mass="26045" checksum="B65158E349996F13" modified="2008-01-15" version="1">MSGPAVNAMTLQRPCAAWWGKLPSQGDFVGRRMPHALTMRWDEWLRNGMDQLRSDAADNWSTRFVHSPLWFFLCPASILGQPMVGVIGPSSDRIGRLFPLAIMATVDGSSGMPASDQDIERFLSGARDALIDARRLPLSAQQLDERLATLQWPFQQDGRTPGSASIHSLLADLDMGASQGNAARLPRMDWRACMRPGSTTSVWWISATPRHAPDEVVQHEVLHRRLFTRLFKGA</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="49" xmlns="http://uniprot.org/uniprot">
    <accession>A9BLJ8</accession>
    <name>A9BLJ8_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_3852</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX36483.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_3852"/>
    <dbReference type="PRIDE" id="A9BLJ8"/>
    <dbReference type="EnsemblBacteria" id="ABX36483">
        <property type="protein sequence ID" value="ABX36483"/>
        <property type="gene ID" value="Daci_3852"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_3852"/>
    <dbReference type="eggNOG" id="ENOG5033ZZ3">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_136677_0_0_4"/>
    <dbReference type="OMA" id="NGDINWW"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="41"/>
            <end position="62"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX36483.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="165" mass="18704" checksum="46B06D10F4E5CFD8" modified="2008-01-15" version="1">MSPAGCGGSASAVPDYRKDAFCCTPEAIPCPKKIMKRLLKYLVWAFFAVIAVSLALWVPYGLTPKLIGTSISPRQVYRLEYYDASPLQRLFHMDMKLPGFVRLYRINPETLMEESKVVDLWINGQLYWYLNPPISTIQVGRDVVFEGIPPECTDCPPLTEKQIMP</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="47" xmlns="http://uniprot.org/uniprot">
    <accession>A9BLQ0</accession>
    <name>A9BLQ0_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">WYL domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_4208</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX36839.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012206011.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_4208"/>
    <dbReference type="PRIDE" id="A9BLQ0"/>
    <dbReference type="EnsemblBacteria" id="ABX36839">
        <property type="protein sequence ID" value="ABX36839"/>
        <property type="gene ID" value="Daci_4208"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_4208"/>
    <dbReference type="eggNOG" id="COG2378">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_054168_0_1_4"/>
    <dbReference type="OMA" id="SPHTLVY"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR026881">
        <property type="entry name" value="WYL_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016634">
        <property type="entry name" value="WYL_dom_s026"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13280">
        <property type="entry name" value="WYL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF015558">
        <property type="entry name" value="Txn_reg_DeoR_prd"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="WYL" evidence="1">
        <location>
            <begin position="122"/>
            <end position="192"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF13280"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX36839.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="302" mass="34407" checksum="10E264C8B429493C" modified="2008-01-15" version="1">MPHQQLANLTQPQRDRLAFVELRLRFIGEMRRQDLVARFGIQSAAASRDLALYKDLAPGNIDYDGKGKFYVLGSSFQPIFDFPPERVLSWLTQGFGDGEPMHIKAWVASESPSRLTHPDLAILASVTRAIHYECPLGIEYHSISSGRTAREIVPFALIDNGLRWHVRAFDRKSQEFRDFVLTRIKRPVVRKGQPVESHEMSDQDIQWTRIVELELVPHPDQPRPEITEMDYGMQGGALHMKLRAATAGYILRKWSVDCSPDHRLRGPEYRLWLKDHLAIYGVRNAVLAPGYAPPSAETSIDD</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="85" xmlns="http://uniprot.org/uniprot">
    <accession>A9BLY0</accession>
    <name>A9BLY0_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Transcriptional regulator, LacI family</fullName>
            <ecNumber evidence="5">5.1.1.1</ecNumber>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ordered locus">Daci_4288</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="6" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EC" id="5.1.1.1" evidence="5"/>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX36919.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012206091.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_4288"/>
    <dbReference type="PRIDE" id="A9BLY0"/>
    <dbReference type="EnsemblBacteria" id="ABX36919">
        <property type="protein sequence ID" value="ABX36919"/>
        <property type="gene ID" value="Daci_4288"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_4288"/>
    <dbReference type="eggNOG" id="COG1609">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_037628_6_3_4"/>
    <dbReference type="OMA" id="IVFQTFY"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008784">
        <property type="term" value="F:alanine racemase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006355">
        <property type="term" value="P:regulation of transcription, DNA-templated"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd01392">
        <property type="entry name" value="HTH_LacI"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.260.40">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000843">
        <property type="entry name" value="HTH_LacI"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR046335">
        <property type="entry name" value="LacI/GalR-like_sensor"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010982">
        <property type="entry name" value="Lambda_DNA-bd_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR028082">
        <property type="entry name" value="Peripla_BP_I"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00356">
        <property type="entry name" value="LacI"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13377">
        <property type="entry name" value="Peripla_BP_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00354">
        <property type="entry name" value="HTH_LACI"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47413">
        <property type="entry name" value="SSF47413"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53822">
        <property type="entry name" value="SSF53822"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50932">
        <property type="entry name" value="HTH_LACI_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="5" id="KW-0413">Isomerase</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0804">Transcription</keyword>
    <keyword evidence="1" id="KW-0805">Transcription regulation</keyword>
    <feature type="domain" description="HTH lacI-type" evidence="4">
        <location>
            <begin position="10"/>
            <end position="64"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023015"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023163"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="PROSITE" id="PS50932"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="ABX36919.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="334" mass="35747" checksum="560C2E889C36292C" modified="2008-01-15" version="1">MNTPTPPRPATLHDVAEAAGVSLITASRALGNPSIVSEKTRERVRQAVEATGYIPNLLAGGLKSRRSRMVAGVVPALSVSQFLPTVQSLTATLAQEGYQLLLGQTFYDEQREEEVLNAMIGRQPDGIVMMGLVQSDKARERLRRTGIPVVETWDFSDRPLDMVVGFSHLKVGSALAGYFLSRGLQRVGMATGSDHRAQQRREGFLAAWGREVPTVTVSAPGSLELGRQALGQLLAQQPDLQAVVCSSDMLAHGILVEAQARGLRVPVDLAVSGFGNADFAAHLLPSLTTVHVDGPGIGRLAAELVLARCKGHSAGRSAFDLGFELIERDSTRRA</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="87" xmlns="http://uniprot.org/uniprot">
    <accession>A9BM40</accession>
    <name>A9BM40_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="6">Amino acid adenylation domain protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ordered locus">Daci_4756</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="7" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX37385.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012206555.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_4756"/>
    <dbReference type="PRIDE" id="A9BM40"/>
    <dbReference type="EnsemblBacteria" id="ABX37385">
        <property type="protein sequence ID" value="ABX37385"/>
        <property type="gene ID" value="Daci_4756"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_4756"/>
    <dbReference type="eggNOG" id="COG0318">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="eggNOG" id="COG1020">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_000022_0_9_4"/>
    <dbReference type="OMA" id="CIHAQFR"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003824">
        <property type="term" value="F:catalytic activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0031177">
        <property type="term" value="F:phosphopantetheine binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008610">
        <property type="term" value="P:lipid biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd05931">
        <property type="entry name" value="FAAL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.1200.10">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.300.30">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.559.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.12780">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010071">
        <property type="entry name" value="AA_adenyl_domain"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036736">
        <property type="entry name" value="ACP-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025110">
        <property type="entry name" value="AMP-bd_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045851">
        <property type="entry name" value="AMP-bd_C_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020845">
        <property type="entry name" value="AMP-binding_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000873">
        <property type="entry name" value="AMP-dep_Synth/Lig"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR042099">
        <property type="entry name" value="ANL_N_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023213">
        <property type="entry name" value="CAT-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001242">
        <property type="entry name" value="Condensatn"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR040097">
        <property type="entry name" value="FAAL/FAAC"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020806">
        <property type="entry name" value="PKS_PP-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009081">
        <property type="entry name" value="PP-bd_ACP"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00501">
        <property type="entry name" value="AMP-binding"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13193">
        <property type="entry name" value="AMP-binding_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00668">
        <property type="entry name" value="Condensation"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00550">
        <property type="entry name" value="PP-binding"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SMART" id="SM00823">
        <property type="entry name" value="PKS_PP"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47336">
        <property type="entry name" value="SSF47336"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01733">
        <property type="entry name" value="AA-adenyl-dom"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00455">
        <property type="entry name" value="AMP_BINDING"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50075">
        <property type="entry name" value="CARRIER"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1 3" id="KW-0596">Phosphopantetheine</keyword>
    <keyword evidence="2" id="KW-0597">Phosphoprotein</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Carrier" evidence="5">
        <location>
            <begin position="598"/>
            <end position="673"/>
        </location>
    </feature>
    <feature type="domain" description="Carrier" evidence="5">
        <location>
            <begin position="1674"/>
            <end position="1749"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="4">
        <location>
            <begin position="1746"/>
            <end position="1766"/>
        </location>
    </feature>
    <feature type="modified residue" description="O-(pantetheine 4'-phosphoryl)serine" evidence="3">
        <location>
            <position position="633"/>
        </location>
    </feature>
    <feature type="modified residue" description="O-(pantetheine 4'-phosphoryl)serine" evidence="3">
        <location>
            <position position="1709"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022450"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022553"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00258"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="PROSITE" id="PS50075"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="ABX37385.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="1789" mass="192473" checksum="59F8BBCCF136E6C9" modified="2008-01-15" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2020-10-07" version="31" xmlns="http://uniprot.org/uniprot">
    <accession>A9BMC6</accession>
    <name>A9BMC6_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_4842</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX37471.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_4842"/>
    <dbReference type="EnsemblBacteria" id="ABX37471">
        <property type="protein sequence ID" value="ABX37471"/>
        <property type="gene ID" value="Daci_4842"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_4842"/>
    <dbReference type="HOGENOM" id="CLU_086601_0_0_4"/>
    <dbReference type="OMA" id="TESLEWQ"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="254"/>
            <end position="280"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX37471.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="280" mass="30443" checksum="85943E87BCF80379" modified="2008-01-15" version="1">MEFSLWRIAFDCGRKHVHFPWNSARPGVLLSLGGGAMRLRLPAAEAPGTAHGRSGAVVGTGRLNSHPHRSLGVHQGDSMISNLTKARVLRSVIAGCTLAQAGRAEKLSTERARTALNRICELLHLPNDLAAIHAEPQLYLESLAHFESLPQFELRTPLVAKLKQMLGLRSSRQLTPAVLAQVSASQLINQGVSIIALADLQEWLLKHDLSLMHGPPITDIDFREARKAIALLDAFDFDTESLEWQMNHLARKRGRARSRPAPPACAVESLPAVSTTGAAP</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="83" xmlns="http://uniprot.org/uniprot">
    <accession>A9BMG5</accession>
    <name>A9BMG5_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="6">Transcriptional regulator, Crp/Fnr family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ordered locus">Daci_4881</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="7" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX37510.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012206680.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_4881"/>
    <dbReference type="PRIDE" id="A9BMG5"/>
    <dbReference type="EnsemblBacteria" id="ABX37510">
        <property type="protein sequence ID" value="ABX37510"/>
        <property type="gene ID" value="Daci_4881"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_4881"/>
    <dbReference type="eggNOG" id="COG0664">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_075053_3_4_4"/>
    <dbReference type="OMA" id="WVKIRTY"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006355">
        <property type="term" value="P:regulation of transcription, DNA-templated"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd00038">
        <property type="entry name" value="CAP_ED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.120.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018490">
        <property type="entry name" value="cNMP-bd-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000595">
        <property type="entry name" value="cNMP-bd_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001387">
        <property type="entry name" value="Cro/C1-type_HTH"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012318">
        <property type="entry name" value="HTH_CRP"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014710">
        <property type="entry name" value="RmlC-like_jellyroll"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036390">
        <property type="entry name" value="WH_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00027">
        <property type="entry name" value="cNMP_binding"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13545">
        <property type="entry name" value="HTH_Crp_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00100">
        <property type="entry name" value="cNMP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00419">
        <property type="entry name" value="HTH_CRP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46785">
        <property type="entry name" value="SSF46785"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51206">
        <property type="entry name" value="SSF51206"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50042">
        <property type="entry name" value="CNMP_BINDING_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50943">
        <property type="entry name" value="HTH_CROC1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51063">
        <property type="entry name" value="HTH_CRP_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Cyclic nucleotide-binding" evidence="3">
        <location>
            <begin position="53"/>
            <end position="159"/>
        </location>
    </feature>
    <feature type="domain" description="HTH crp-type" evidence="5">
        <location>
            <begin position="190"/>
            <end position="268"/>
        </location>
    </feature>
    <feature type="domain" description="HTH cro/C1-type" evidence="4">
        <location>
            <begin position="218"/>
            <end position="241"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="1"/>
            <end position="36"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="PROSITE" id="PS50042"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="PROSITE" id="PS50943"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="PROSITE" id="PS51063"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="ABX37510.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="278" mass="30362" checksum="DCE0470D9F92277F" modified="2008-01-15" version="1">MDPTQASSHTSGLPAPAPAAPAAHATPRGVRRRAAAGPPGMADLWATIEAGRWFHALPPELGAQLKALAQPRTLAAGDWLFRRGDPPCGLYAVARGALSISGTAACGEQARTALLTLVEPPMWLGEIALFDGAERTHDAQAATACTVLHVPQAPLQAWLAAHPEHWQVLALLLTDKLRVCLMALEEHTLLPAPQRLARRLVRMAEGFDQWQPDGQGRQRWRRELDVSQEQLARMLGLSRQTTNQILQELQQAGCLQLRRGKMEVLDRQGLRDAGWPED</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="63" xmlns="http://uniprot.org/uniprot">
    <accession>A9BML7</accession>
    <name>A9BML7_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="5">tRNA/rRNA methyltransferase (SpoU)</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ordered locus">Daci_4933</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="6" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX37562.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012206732.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_4933"/>
    <dbReference type="PRIDE" id="A9BML7"/>
    <dbReference type="EnsemblBacteria" id="ABX37562">
        <property type="protein sequence ID" value="ABX37562"/>
        <property type="gene ID" value="Daci_4933"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_4933"/>
    <dbReference type="eggNOG" id="COG0566">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_021322_3_2_4"/>
    <dbReference type="OMA" id="ILIFEAK"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003723">
        <property type="term" value="F:RNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008173">
        <property type="term" value="F:RNA methyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006396">
        <property type="term" value="P:RNA processing"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.1330.30">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.1280.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029028">
        <property type="entry name" value="Alpha/beta_knot_MTases"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029064">
        <property type="entry name" value="L30e-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001537">
        <property type="entry name" value="SpoU_MeTrfase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029026">
        <property type="entry name" value="tRNA_m1G_MTases_N"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00588">
        <property type="entry name" value="SpoU_methylase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55315">
        <property type="entry name" value="SSF55315"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF75217">
        <property type="entry name" value="SSF75217"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="2 5" id="KW-0489">Methyltransferase</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 5" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="SpoU_methylase" evidence="4">
        <location>
            <begin position="117"/>
            <end position="252"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022490"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022603"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="Pfam" id="PF00588"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="ABX37562.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="263" mass="27586" checksum="3132275F154AF44E" modified="2008-01-15" version="1">MSRQPAATLIQSRDNVLVKDLRRLVQDSGAYRKQGRVWLEGDHLCRAALARGMQPSVAVVAESFWPLVPLEWVQGAGKCVVLADALFAEVSGLESPARIGFLMDWQASAVIRAGVATVVLDRVQDAGNVGSILRSAAAFGFSQVVALKGTAALWSQKVLRAGMGAHFGLQLVESASSEDLDALGLPLIVTSSHQGELIHNAALPWPCAWAMGHEGQGVGEALMQRAAQHVRIGQPGGEESLNVAAAAAICLHASSVSAGSRQG</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="67" xmlns="http://uniprot.org/uniprot">
    <accession>A9BMM7</accession>
    <name>A9BMM7_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="7">Phosphatidate cytidylyltransferase</fullName>
            <ecNumber evidence="7">2.7.7.41</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="9" type="ordered locus">Daci_4943</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="9 10" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="10" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="7">
            <text>a 1,2-diacyl-sn-glycero-3-phosphate + CTP + H(+) = a CDP-1,2-diacyl-sn-glycerol + diphosphate</text>
            <dbReference type="Rhea" id="RHEA:16229"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:33019"/>
            <dbReference type="ChEBI" id="CHEBI:37563"/>
            <dbReference type="ChEBI" id="CHEBI:58332"/>
            <dbReference type="ChEBI" id="CHEBI:58608"/>
            <dbReference type="EC" id="2.7.7.41"/>
        </reaction>
    </comment>
    <comment type="pathway">
        <text evidence="7">Phospholipid metabolism; CDP-diacylglycerol biosynthesis; CDP-diacylglycerol from sn-glycerol 3-phosphate: step 3/3.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2 7">Belongs to the CDS family.</text>
    </comment>
    <dbReference type="EC" id="2.7.7.41" evidence="7"/>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX37572.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012206742.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_4943"/>
    <dbReference type="PRIDE" id="A9BMM7"/>
    <dbReference type="EnsemblBacteria" id="ABX37572">
        <property type="protein sequence ID" value="ABX37572"/>
        <property type="gene ID" value="Daci_4943"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_4943"/>
    <dbReference type="eggNOG" id="COG0575">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_037294_1_2_4"/>
    <dbReference type="OMA" id="WEWGRLN"/>
    <dbReference type="UniPathway" id="UPA00557">
        <property type="reaction ID" value="UER00614"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004605">
        <property type="term" value="F:phosphatidate cytidylyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016024">
        <property type="term" value="P:CDP-diacylglycerol biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniPathway"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000374">
        <property type="entry name" value="PC_trans"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01315">
        <property type="entry name" value="CDS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="6 8" id="KW-0472">Membrane</keyword>
    <keyword evidence="7 9" id="KW-0548">Nucleotidyltransferase</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 7 9" id="KW-0808">Transferase</keyword>
    <keyword evidence="4 7 8" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="5 8" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="6"/>
            <end position="37"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="49"/>
            <end position="74"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="80"/>
            <end position="101"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="113"/>
            <end position="131"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="137"/>
            <end position="156"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="177"/>
            <end position="198"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="218"/>
            <end position="238"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00010185"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="RuleBase" id="RU003938"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="ABX37572.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="284" mass="29848" checksum="C793E94FAA3B37A5" modified="2008-01-15" version="1">MLKQRVITALILLAILLPALFYPTGVPFAVVVLVLMAAGAWEWGRLNGFGSAGAICIGAICTAMCVGAWAAGWLERPLTAVWVVAGSAWVLGGGALLRAGVAGWPRIAGPVRLVGGVLALWLAWVAVVQARMMGINFLLSVLVLVWVADVFAYFAGRTLGLKFTKSKLAPSISPGKSWEGVWGGMAGVLVLALAWVWADRHYAVAVPSFYSLLLARGAWFLLLAVVFMAAMSVVGDLVESLVKRSVGVKDSSGLLPGHGGVLDRVDALLPTLPLAMMLSSFAHS</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="77" xmlns="http://uniprot.org/uniprot">
    <accession>A9BMP4</accession>
    <name>A9BMP4_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="5">O-acetylhomoserine/O-acetylserine sulfhydrylase</fullName>
            <ecNumber evidence="5">2.5.1.49</ecNumber>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ordered locus">Daci_4960</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="6" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="1 4">
            <name>pyridoxal 5'-phosphate</name>
            <dbReference type="ChEBI" id="CHEBI:597326"/>
        </cofactor>
    </comment>
    <comment type="similarity">
        <text evidence="2 4">Belongs to the trans-sulfuration enzymes family.</text>
    </comment>
    <dbReference type="EC" id="2.5.1.49" evidence="5"/>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX37589.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012206759.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_4960"/>
    <dbReference type="PRIDE" id="A9BMP4"/>
    <dbReference type="EnsemblBacteria" id="ABX37589">
        <property type="protein sequence ID" value="ABX37589"/>
        <property type="gene ID" value="Daci_4960"/>
    </dbReference>
    <dbReference type="GeneID" id="60689308"/>
    <dbReference type="KEGG" id="dac:Daci_4960"/>
    <dbReference type="eggNOG" id="COG2873">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_018986_4_0_4"/>
    <dbReference type="OMA" id="YGGMITF"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003961">
        <property type="term" value="F:O-acetylhomoserine aminocarboxypropyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030170">
        <property type="term" value="F:pyridoxal phosphate binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0019346">
        <property type="term" value="P:transsulfuration"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd00614">
        <property type="entry name" value="CGS_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.640.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.1150.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000277">
        <property type="entry name" value="Cys/Met-Metab_PyrdxlP-dep_enz"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006235">
        <property type="entry name" value="OAc-hSer/O-AcSer_sulfhydrylase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015424">
        <property type="entry name" value="PyrdxlP-dep_Trfase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015421">
        <property type="entry name" value="PyrdxlP-dep_Trfase_major"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015422">
        <property type="entry name" value="PyrdxlP-dep_Trfase_small"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01053">
        <property type="entry name" value="Cys_Met_Meta_PP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF001434">
        <property type="entry name" value="CGS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53383">
        <property type="entry name" value="SSF53383"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01326">
        <property type="entry name" value="OAH_OAS_sulfhy"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00868">
        <property type="entry name" value="CYS_MET_METAB_PP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3 4" id="KW-0663">Pyridoxal phosphate</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="5" id="KW-0808">Transferase</keyword>
    <feature type="modified residue" description="N6-(pyridoxal phosphate)lysine" evidence="3">
        <location>
            <position position="210"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001933"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00009077"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="PIRSR" id="PIRSR001434-2"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="RuleBase" id="RU362118"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="ABX37589.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="432" mass="46250" checksum="46859FA8C1FD3E89" modified="2008-01-15" version="1">MPGYSDPGFDTLALHAGAQPDPATGARATPIHLTTSFVFESSDHAASLFNLERPGHVYSRISNPTNAVLEQRVSALEGGVGAIAVASGQAALHLSVATLMGAGSHIVASTALYGGSQNLLHYTLARFGIETTFVKPGDIDGWRAAVRPNTKLFFGETVGNPGLDVLDIPTISAIAHEAGVPLLVDSTLTSPWLMKPLEHGADIVYHSATKFLSGHGTVVGGIVVDGGSFDWEKSGRFPELTEPYDGFHNMVFSEESSTGAFLLRARREGLRDFGACMSPHTAWLILQGIETLPLRMERHIRNTEKVVQFLASHPLVGRVGHPLLETHPSHQLAKKLLPRGAGSVFSFDIKGNRNQGRKFIETLKVFSHLANVGDCRSLVIHPASTTHFRMSDEALAQAGIGQGTIRLSIGLEDADDLIDDLKRALKAAEKAA</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="62" xmlns="http://uniprot.org/uniprot">
    <accession>A9BMP6</accession>
    <name>A9BMP6_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Acetamidase/Formamidase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Daci_4962</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="2" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX37591.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012206761.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_4962"/>
    <dbReference type="PRIDE" id="A9BMP6"/>
    <dbReference type="EnsemblBacteria" id="ABX37591">
        <property type="protein sequence ID" value="ABX37591"/>
        <property type="gene ID" value="Daci_4962"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_4962"/>
    <dbReference type="eggNOG" id="COG2421">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_032013_2_1_4"/>
    <dbReference type="OMA" id="PHFGTMG"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016811">
        <property type="term" value="F:hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004304">
        <property type="entry name" value="FmdA_AmdA"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006311">
        <property type="entry name" value="TAT_signal"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR31891">
        <property type="entry name" value="PTHR31891"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03069">
        <property type="entry name" value="FmdA_AmdA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51318">
        <property type="entry name" value="TAT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ABX37591.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="491" mass="52971" checksum="24368B38A50987DB" modified="2008-01-15" version="1">MTIPHQEHICGPGCQHGASPADEKLIREEFQVARRSFLRDAMVVGGGAVSAGAISGAMAPSRAFAQGAPGARAGQGMASHYYIPASASTVLWGYFSRSAKPVVEVESGDYVTMETLTHHANDDAERMVRGDPGAESVFHWDSQRKNVDRRGAGPMDAKNGAGAGQGVHICTGPVRIKGAQPGDVLEVRIIDVVPRPSGNPQFKGRTFGSNAAANWGFHYGDTLTEPRKREVVTIYEVDATGERNWARAVYNYRWTPQTDPFGVVHPTIDYPGVPVDHRTISKNENVLRNIRVPVRPHFGTIGVAPAEVEMASSIPPNHTGGNIDNWRIGKGATMYFPVAVPGANFTVGDPHASQGDSELCGTAIECSLTGTFQLVLHKKADLPGTPLAELAYPLLETQDEWLLHGFSYANYLAELGPDAQNQIFKKSSVDLALRDAYHKMRHFLMTTQGLGEDEAISLMSIAVDFGITQVVDGNWGVHALVKKSIFPARGA</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="78" xmlns="http://uniprot.org/uniprot">
    <accession>A9BMR6</accession>
    <name>A9BMR6_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Mandelate racemase/muconate lactonizing protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_4982</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX37611.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012206781.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_4982"/>
    <dbReference type="PRIDE" id="A9BMR6"/>
    <dbReference type="EnsemblBacteria" id="ABX37611">
        <property type="protein sequence ID" value="ABX37611"/>
        <property type="gene ID" value="Daci_4982"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_4982"/>
    <dbReference type="eggNOG" id="COG4948">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_030273_3_0_4"/>
    <dbReference type="OMA" id="WDYEYLW"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0050032">
        <property type="term" value="F:L-rhamnonate dehydratase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd03327">
        <property type="entry name" value="MR_like_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.20.20.120">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.390.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036849">
        <property type="entry name" value="Enolase-like_C_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029017">
        <property type="entry name" value="Enolase-like_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029065">
        <property type="entry name" value="Enolase_C-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR034619">
        <property type="entry name" value="L-lyxonate_dehydratase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023444">
        <property type="entry name" value="L-Rhamnon_dehydrat"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013342">
        <property type="entry name" value="Mandelate_racemase_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013341">
        <property type="entry name" value="Mandelate_racemase_N_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13378">
        <property type="entry name" value="MR_MLE_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02746">
        <property type="entry name" value="MR_MLE_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SFLD" id="SFLDF00554">
        <property type="entry name" value="L-lyxonate_dehydratase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00922">
        <property type="entry name" value="MR_MLE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51604">
        <property type="entry name" value="SSF51604"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54826">
        <property type="entry name" value="SSF54826"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="MR_MLE" evidence="1">
        <location>
            <begin position="158"/>
            <end position="261"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="SMART" id="SM00922"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX37611.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="390" mass="44539" checksum="7447B9F2A6086764" modified="2008-01-15" version="1">MKIKSVRARVYEWQGKTVPPQGNFCSNAMDLLYAPQETMSTFRFHSWTVVEIETDDGIVGLGNVALAPRIAKAIIDEYLAPLVIGHDPWDYEYLWQRMYRATHAWGRKGVTMAAISAVDLAIWDILGKSVNKPVFKLLGGRTKERIPCYYSKLYRTDLKAMQEEAQKFLDQGFKAFKMRFGYGPAHLQEGVRENLRSVEAVREVIGYDCDLMLECYMGWNLEYARRMLPKLEKFEPRWLEEPVIADDIDGYAELSRLNSIPISGGEHEFSLYGFKQLLDKKAVSVVQYDTNRVGGITAAHKINALCEAFSVPVIPHAGQMHNYHLTMSTLASPMAEYFPIFDVEVGNELFWYIFDGEPVAENGFLQLRDDVPGLGLTLKTEYLDQFRIVE</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="83" xmlns="http://uniprot.org/uniprot">
    <accession>A9BMV9</accession>
    <name>A9BMV9_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Segregation and condensation protein B</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ordered locus">Daci_5025</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="6" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX37654.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012206824.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_5025"/>
    <dbReference type="PRIDE" id="A9BMV9"/>
    <dbReference type="EnsemblBacteria" id="ABX37654">
        <property type="protein sequence ID" value="ABX37654"/>
        <property type="gene ID" value="Daci_5025"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_5025"/>
    <dbReference type="eggNOG" id="COG1386">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_045647_2_1_4"/>
    <dbReference type="OMA" id="DGWRFYT"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051301">
        <property type="term" value="P:cell division"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051304">
        <property type="term" value="P:chromosome separation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005234">
        <property type="entry name" value="ScpB_csome_segregation"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036390">
        <property type="entry name" value="WH_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR34298">
        <property type="entry name" value="PTHR34298"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04079">
        <property type="entry name" value="SMC_ScpB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF019345">
        <property type="entry name" value="ScpB"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46785">
        <property type="entry name" value="SSF46785"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00281">
        <property type="entry name" value="TIGR00281"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-0131">Cell cycle</keyword>
    <keyword evidence="1" id="KW-0132">Cell division</keyword>
    <keyword evidence="2" id="KW-0159">Chromosome partition</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="4">
        <location>
            <begin position="181"/>
            <end position="278"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="4">
        <location>
            <begin position="250"/>
            <end position="267"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022618"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022829"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023306"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="ABX37654.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="278" mass="30121" checksum="CE4D3863433BB00D" modified="2008-01-15" version="1">MNTVDAKRVLETALICAPQPVTLRELRSLFDDVLGSDTLKDLLLDLQKDWAQKGVELVQVASGWRFQSRPEMRVYLDRLHPEKPPRYTRATLETLAIIAYRQPVTRGDIEDIRGVTVNSLLIKQLEDRGWIEVIGHRETVGRPSLFATTRQFLDDLGLQSLDQLPMLEEPESQQSLFKALEESDAQELAADEAAPAGDAPLPEEPQGETDATESDGADAAMAADTAQADTADLSDAADAADAADAADAAETTDTTDTTDTADTTDTDGAAKQAEEGKP</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="69" xmlns="http://uniprot.org/uniprot">
    <accession>A9BN91</accession>
    <name>A9BN91_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Secreted hydrolase-like protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Daci_5157</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="4" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX37786.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012206956.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_5157"/>
    <dbReference type="PRIDE" id="A9BN91"/>
    <dbReference type="EnsemblBacteria" id="ABX37786">
        <property type="protein sequence ID" value="ABX37786"/>
        <property type="gene ID" value="Daci_5157"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_5157"/>
    <dbReference type="eggNOG" id="COG5621">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_040626_1_0_4"/>
    <dbReference type="OMA" id="AWLDHEW"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016787">
        <property type="term" value="F:hydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.370.10">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023374">
        <property type="entry name" value="AttH-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010791">
        <property type="entry name" value="AttH_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006311">
        <property type="entry name" value="TAT_signal"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07143">
        <property type="entry name" value="CrtC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51318">
        <property type="entry name" value="TAT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="1">
        <location>
            <begin position="1"/>
            <end position="27"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5002735837" evidence="1">
        <location>
            <begin position="28"/>
            <end position="374"/>
        </location>
    </feature>
    <feature type="domain" description="CrtC" evidence="2">
        <location>
            <begin position="47"/>
            <end position="231"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF07143"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ABX37786.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="374" mass="41224" checksum="9B42313AE44AC3F8" modified="2008-01-15" version="1">MMPLPRRHLLGLAAGLGLGAAGLPAQALPPRTLVFPRDHGSHPGLRTEWWYITGQARAAGRAWGFQITFFRSRVQATQELRSAFAARQLLFAHAALCDVQGARLHHDQRIARAGFGIAQASETDADVRLQDWSLQRTDEGTGNGEAERYTTRIRSTAFALDLRFETREHPLLQGRAGLSRKGPEPEQASYYYSRPQLQVSGTLELAGQRMEIEAAREPGDNRAWLDHEWSQALMHPEAVGWDWIGMNLFDGGALTAFRVRRADGSALWTGGSLRGADGKVQIFAHDAVQFAPRRHWSSPASGARYPVQWQVDTPAGRFTVNALVDDQELDSSASTGAIYWEGLCSLQKPTGPGQEARAGQGYLEMTGYARPLQL</sequence>
</entry>
<entry dataset="Swiss-Prot" created="2009-03-24" modified="2022-08-03" version="78" xmlns="http://uniprot.org/uniprot">
    <accession>A9BNB6</accession>
    <name>TPIS_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Triosephosphate isomerase</fullName>
            <shortName evidence="1">TIM</shortName>
            <shortName evidence="1">TPI</shortName>
            <ecNumber evidence="1">5.3.1.1</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="1">Triose-phosphate isomerase</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="1" type="primary">tpiA</name>
        <name type="ordered locus">Daci_5182</name>
    </gene>
    <organism>
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference key="1">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain>DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="1">Involved in the gluconeogenesis. Catalyzes stereospecifically the conversion of dihydroxyacetone phosphate (DHAP) to D-glyceraldehyde-3-phosphate (G3P).</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>D-glyceraldehyde 3-phosphate = dihydroxyacetone phosphate</text>
            <dbReference type="Rhea" id="RHEA:18585"/>
            <dbReference type="ChEBI" id="CHEBI:57642"/>
            <dbReference type="ChEBI" id="CHEBI:59776"/>
            <dbReference type="EC" id="5.3.1.1"/>
        </reaction>
    </comment>
    <comment type="pathway">
        <text evidence="1">Carbohydrate biosynthesis; gluconeogenesis.</text>
    </comment>
    <comment type="pathway">
        <text evidence="1">Carbohydrate degradation; glycolysis; D-glyceraldehyde 3-phosphate from glycerone phosphate: step 1/1.</text>
    </comment>
    <comment type="subunit">
        <text evidence="1">Homodimer.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="1">Belongs to the triosephosphate isomerase family.</text>
    </comment>
    <dbReference type="EC" id="5.3.1.1" evidence="1"/>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX37811.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012206981.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A9BNB6"/>
    <dbReference type="SMR" id="A9BNB6"/>
    <dbReference type="STRING" id="398578.Daci_5182"/>
    <dbReference type="PRIDE" id="A9BNB6"/>
    <dbReference type="EnsemblBacteria" id="ABX37811">
        <property type="protein sequence ID" value="ABX37811"/>
        <property type="gene ID" value="Daci_5182"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_5182"/>
    <dbReference type="eggNOG" id="COG0149">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_024251_2_1_4"/>
    <dbReference type="OMA" id="QEVCGAI"/>
    <dbReference type="UniPathway" id="UPA00109">
        <property type="reaction ID" value="UER00189"/>
    </dbReference>
    <dbReference type="UniPathway" id="UPA00138"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004807">
        <property type="term" value="F:triose-phosphate isomerase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006094">
        <property type="term" value="P:gluconeogenesis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006096">
        <property type="term" value="P:glycolytic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd00311">
        <property type="entry name" value="TIM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.20.20.70">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00147_B">
        <property type="entry name" value="TIM_B"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013785">
        <property type="entry name" value="Aldolase_TIM"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035990">
        <property type="entry name" value="TIM_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR022896">
        <property type="entry name" value="TrioseP_Isoase_bac/euk"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000652">
        <property type="entry name" value="Triosephosphate_isomerase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020861">
        <property type="entry name" value="Triosephosphate_isomerase_AS"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR21139">
        <property type="entry name" value="PTHR21139"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00121">
        <property type="entry name" value="TIM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51351">
        <property type="entry name" value="SSF51351"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00419">
        <property type="entry name" value="tim"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00171">
        <property type="entry name" value="TIM_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51440">
        <property type="entry name" value="TIM_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword id="KW-0963">Cytoplasm</keyword>
    <keyword id="KW-0312">Gluconeogenesis</keyword>
    <keyword id="KW-0324">Glycolysis</keyword>
    <keyword id="KW-0413">Isomerase</keyword>
    <keyword id="KW-1185">Reference proteome</keyword>
    <feature type="chain" id="PRO_1000096492" description="Triosephosphate isomerase">
        <location>
            <begin position="1"/>
            <end position="248"/>
        </location>
    </feature>
    <feature type="active site" description="Electrophile" evidence="1">
        <location>
            <position position="95"/>
        </location>
    </feature>
    <feature type="active site" description="Proton acceptor" evidence="1">
        <location>
            <position position="166"/>
        </location>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <begin position="9"/>
            <end position="11"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <position position="172"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <position position="210"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <begin position="231"/>
            <end position="232"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <evidence type="ECO:0000255" key="1">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00147"/>
        </source>
    </evidence>
    <sequence length="248" mass="25558" checksum="D441B11D6B7E087D" modified="2008-01-15" version="1">MKKKLIVGNWKMNGGLAANAVLLKALKEGLPEGGNAGVAVAVPAVYLAQAQAELEGSAIGVAAQDVSQHESGAYTGELSAAMLRDFGVRYTLVGHSERRQYHGETDAVVALKAQAALAKGVTPIVCVGETLAEREAGQTEEVVKRQLAAVIHQVGQCINELVVAYEPVWAIGTGRTATPEQAQQVHAVLRAQLAAASQQADRIALLYGGSMNASNAAQLLAQADIDGGLVGGASLKAADFLTIIAAAQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="73" xmlns="http://uniprot.org/uniprot">
    <accession>A9BNM0</accession>
    <name>A9BNM0_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ordered locus">Daci_5286</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="5" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX37915.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012207084.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_5286"/>
    <dbReference type="PRIDE" id="A9BNM0"/>
    <dbReference type="EnsemblBacteria" id="ABX37915">
        <property type="protein sequence ID" value="ABX37915"/>
        <property type="gene ID" value="Daci_5286"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_5286"/>
    <dbReference type="eggNOG" id="COG0840">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_000445_107_26_4"/>
    <dbReference type="OMA" id="PAMPLRW"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016020">
        <property type="term" value="C:membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004888">
        <property type="term" value="F:transmembrane signaling receptor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006935">
        <property type="term" value="P:chemotaxis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0007165">
        <property type="term" value="P:signal transduction"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd00130">
        <property type="entry name" value="PAS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004090">
        <property type="entry name" value="Chemotax_Me-accpt_rcpt"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004089">
        <property type="entry name" value="MCPsignal_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000014">
        <property type="entry name" value="PAS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035965">
        <property type="entry name" value="PAS-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013655">
        <property type="entry name" value="PAS_fold_3"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00015">
        <property type="entry name" value="MCPsignal"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08447">
        <property type="entry name" value="PAS_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00260">
        <property type="entry name" value="CHEMTRNSDUCR"/>
    </dbReference>
    <dbReference type="SMART" id="SM00283">
        <property type="entry name" value="MA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55785">
        <property type="entry name" value="SSF55785"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00229">
        <property type="entry name" value="sensory_box"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50111">
        <property type="entry name" value="CHEMOTAXIS_TRANSDUC_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50112">
        <property type="entry name" value="PAS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0807">Transducer</keyword>
    <feature type="domain" description="PAS" evidence="3">
        <location>
            <begin position="21"/>
            <end position="60"/>
        </location>
    </feature>
    <feature type="domain" description="Methyl-accepting transducer" evidence="2">
        <location>
            <begin position="274"/>
            <end position="503"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00284"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS50111"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="PROSITE" id="PS50112"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="ABX37915.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="519" mass="55713" checksum="6414FA1D22F960B7" modified="2008-01-15" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="57" xmlns="http://uniprot.org/uniprot">
    <accession>A9BNY1</accession>
    <name>A9BNY1_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">UDG domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_5397</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX38026.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012207195.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_5397"/>
    <dbReference type="PRIDE" id="A9BNY1"/>
    <dbReference type="EnsemblBacteria" id="ABX38026">
        <property type="protein sequence ID" value="ABX38026"/>
        <property type="gene ID" value="Daci_5397"/>
    </dbReference>
    <dbReference type="GeneID" id="60689745"/>
    <dbReference type="KEGG" id="dac:Daci_5397"/>
    <dbReference type="eggNOG" id="COG3663">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_094865_0_0_4"/>
    <dbReference type="OMA" id="QQYYAHP"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.470.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR026353">
        <property type="entry name" value="Hypoxan-DNA_Glyclase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005122">
        <property type="entry name" value="Uracil-DNA_glycosylase-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036895">
        <property type="entry name" value="Uracil-DNA_glycosylase-like_sf"/>
    </dbReference>
    <dbReference type="SMART" id="SM00986">
        <property type="entry name" value="UDG"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52141">
        <property type="entry name" value="SSF52141"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR04274">
        <property type="entry name" value="hypoxanDNAglyco"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="UDG" evidence="1">
        <location>
            <begin position="23"/>
            <end position="175"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="SMART" id="SM00986"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX38026.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="181" mass="19765" checksum="B8B64A9DB019FF3A" modified="2008-01-15" version="1">MPAMSLTVPDLPPPGAPRWQGLAPVADARTRALVLGSFPGLRSLQLQQYYAHPQNQFWPLLQALWPGHPQPGRDDYAGRCEWLLARGLGLWDVYASCEREGSLDSAIRAAEVNDFVALRTHCPQLALALHNGGESYKHAGRTQALGLAAVKLPSTSPANASWSFARKVQAWREALAAHQLL</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="99" xmlns="http://uniprot.org/uniprot">
    <accession>A9BP59</accession>
    <name>A9BP59_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="4 8 13">Glutamyl-tRNA reductase</fullName>
            <shortName evidence="8">GluTR</shortName>
            <ecNumber evidence="4 8 13">1.2.1.70</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="8" type="primary">hemA</name>
        <name evidence="17" type="ordered locus">Daci_5475</name>
    </gene>
    <organism evidence="17 18">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="17 18" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="18">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="18" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="18">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="8">Catalyzes the NADPH-dependent reduction of glutamyl-tRNA(Glu) to glutamate 1-semialdehyde (GSA).</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1 8 13">
            <text>(S)-4-amino-5-oxopentanoate + NADP(+) + tRNA(Glu) = H(+) + L-glutamyl-tRNA(Glu) + NADPH</text>
            <dbReference type="Rhea" id="RHEA:12344"/>
            <dbReference type="Rhea" id="RHEA-COMP:9663"/>
            <dbReference type="Rhea" id="RHEA-COMP:9680"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:57501"/>
            <dbReference type="ChEBI" id="CHEBI:57783"/>
            <dbReference type="ChEBI" id="CHEBI:58349"/>
            <dbReference type="ChEBI" id="CHEBI:78442"/>
            <dbReference type="ChEBI" id="CHEBI:78520"/>
            <dbReference type="EC" id="1.2.1.70"/>
        </reaction>
    </comment>
    <comment type="pathway">
        <text evidence="2 8 13">Porphyrin-containing compound metabolism; protoporphyrin-IX biosynthesis; 5-aminolevulinate from L-glutamyl-tRNA(Glu): step 1/2.</text>
    </comment>
    <comment type="subunit">
        <text evidence="8">Homodimer.</text>
    </comment>
    <comment type="domain">
        <text evidence="8">Possesses an unusual extended V-shaped dimeric structure with each monomer consisting of three distinct domains arranged along a curved 'spinal' alpha-helix. The N-terminal catalytic domain specifically recognizes the glutamate moiety of the substrate. The second domain is the NADPH-binding domain, and the third C-terminal domain is responsible for dimerization.</text>
    </comment>
    <comment type="miscellaneous">
        <text evidence="8">During catalysis, the active site Cys acts as a nucleophile attacking the alpha-carbonyl group of tRNA-bound glutamate with the formation of a thioester intermediate between enzyme and glutamate, and the concomitant release of tRNA(Glu). The thioester intermediate is finally reduced by direct hydride transfer from NADPH, to form the product GSA.</text>
    </comment>
    <comment type="similarity">
        <text evidence="3 8 13">Belongs to the glutamyl-tRNA reductase family.</text>
    </comment>
    <dbReference type="EC" id="1.2.1.70" evidence="4 8 13"/>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX38104.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012207273.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_5475"/>
    <dbReference type="PRIDE" id="A9BP59"/>
    <dbReference type="EnsemblBacteria" id="ABX38104">
        <property type="protein sequence ID" value="ABX38104"/>
        <property type="gene ID" value="Daci_5475"/>
    </dbReference>
    <dbReference type="GeneID" id="60689827"/>
    <dbReference type="KEGG" id="dac:Daci_5475"/>
    <dbReference type="eggNOG" id="COG0373">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_035113_2_2_4"/>
    <dbReference type="OMA" id="FAFKCAA"/>
    <dbReference type="UniPathway" id="UPA00251">
        <property type="reaction ID" value="UER00316"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008883">
        <property type="term" value="F:glutamyl-tRNA reductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0050661">
        <property type="term" value="F:NADP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006782">
        <property type="term" value="P:protoporphyrinogen IX biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniPathway"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.460.30">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00087">
        <property type="entry name" value="Glu_tRNA_reductase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000343">
        <property type="entry name" value="4pyrrol_synth_GluRdtase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015896">
        <property type="entry name" value="4pyrrol_synth_GluRdtase_dimer"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015895">
        <property type="entry name" value="4pyrrol_synth_GluRdtase_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018214">
        <property type="entry name" value="GluRdtase_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036453">
        <property type="entry name" value="GluRdtase_dimer_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036343">
        <property type="entry name" value="GluRdtase_N_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036291">
        <property type="entry name" value="NAD(P)-bd_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006151">
        <property type="entry name" value="Shikm_DH/Glu-tRNA_Rdtase"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00745">
        <property type="entry name" value="GlutR_dimer"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF05201">
        <property type="entry name" value="GlutR_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01488">
        <property type="entry name" value="Shikimate_DH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF000445">
        <property type="entry name" value="4pyrrol_synth_GluRdtase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51735">
        <property type="entry name" value="SSF51735"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF69075">
        <property type="entry name" value="SSF69075"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF69742">
        <property type="entry name" value="SSF69742"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01035">
        <property type="entry name" value="hemA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00747">
        <property type="entry name" value="GLUTR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5 8 11" id="KW-0521">NADP</keyword>
    <keyword evidence="6 8 13" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="7 8 13" id="KW-0627">Porphyrin biosynthesis</keyword>
    <keyword evidence="18" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="GlutR_N" evidence="16">
        <location>
            <begin position="6"/>
            <end position="161"/>
        </location>
    </feature>
    <feature type="domain" description="Shikimate_DH" evidence="15">
        <location>
            <begin position="177"/>
            <end position="311"/>
        </location>
    </feature>
    <feature type="domain" description="GlutR_dimer" evidence="14">
        <location>
            <begin position="325"/>
            <end position="424"/>
        </location>
    </feature>
    <feature type="region of interest" description="Substrate binding" evidence="8 10">
        <location>
            <begin position="56"/>
            <end position="59"/>
        </location>
    </feature>
    <feature type="region of interest" description="Substrate binding" evidence="8 10">
        <location>
            <begin position="119"/>
            <end position="121"/>
        </location>
    </feature>
    <feature type="active site" description="Nucleophile" evidence="8 9">
        <location>
            <position position="57"/>
        </location>
    </feature>
    <feature type="binding site" evidence="8 10">
        <location>
            <position position="114"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="8 10">
        <location>
            <position position="125"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="8 11">
        <location>
            <begin position="194"/>
            <end position="199"/>
        </location>
        <ligand>
            <name>NADP(+)</name>
            <dbReference type="ChEBI" id="CHEBI:58349"/>
        </ligand>
    </feature>
    <feature type="site" description="Important for activity" evidence="8 12">
        <location>
            <position position="104"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001415"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00005059"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00005916"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00012970"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022857"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023002"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023244"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00087"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="PIRSR" id="PIRSR000445-1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="PIRSR" id="PIRSR000445-2"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="PIRSR" id="PIRSR000445-3"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="12">
        <source>
            <dbReference type="PIRSR" id="PIRSR000445-4"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="13">
        <source>
            <dbReference type="RuleBase" id="RU000584"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="14">
        <source>
            <dbReference type="Pfam" id="PF00745"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="15">
        <source>
            <dbReference type="Pfam" id="PF01488"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="16">
        <source>
            <dbReference type="Pfam" id="PF05201"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="17">
        <source>
            <dbReference type="EMBL" id="ABX38104.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="18">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="441" mass="48203" checksum="E5D6532C8B213D70" modified="2008-01-15" version="1">MAVWALGINHHTAPLDMRGRFAFALDQIVPTLQGLRESLTGPGRQHSAVETAILSTCNRTEIYCAAEMPAMDHTLHWLANSGGISSELLRSHSYLLEDGHVARHAFRVASGLDSMVLGEAQILGQMKNAVRAAENAGALGSTLNQLFQRSFAVAKEVRSSTEIGAHSISMAAAAVRLAGQLFEDLSQIRVLFVGAGEMIELVSTHFAARHPKQIMIANRTLERGEKLAAQFGAGTMRLADLPDHLHEYDAVISCTASSLPIIGLGAVESALKKRKHRPMFMVDLAVPRDIESEVKDLRDVYLYTVDDLATVVRTGQAQRQAAVEQAEVIIDHGVQSFMHWLDQRRPQAGVVPLIRQLNTQTDEWRALEIARAKKLLAKGEDIDTVLEALSRGLTQKMLHGTLAELHKGDADQRSQTMDTVSRLFLRSAQSGPRGTAPDKAL</sequence>
</entry>
<entry dataset="Swiss-Prot" created="2009-03-24" modified="2022-08-03" version="77" xmlns="http://uniprot.org/uniprot">
    <accession>A9BP60</accession>
    <name>RF1_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Peptide chain release factor 1</fullName>
            <shortName evidence="1">RF-1</shortName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="1" type="primary">prfA</name>
        <name type="ordered locus">Daci_5476</name>
    </gene>
    <organism>
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference key="1">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain>DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="1">Peptide chain release factor 1 directs the termination of translation in response to the peptide chain termination codons UAG and UAA.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="PTM">
        <text evidence="1">Methylated by PrmC. Methylation increases the termination efficiency of RF1.</text>
    </comment>
    <comment type="similarity">
        <text evidence="1">Belongs to the prokaryotic/mitochondrial release factor family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX38105.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012207274.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A9BP60"/>
    <dbReference type="SMR" id="A9BP60"/>
    <dbReference type="STRING" id="398578.Daci_5476"/>
    <dbReference type="PRIDE" id="A9BP60"/>
    <dbReference type="EnsemblBacteria" id="ABX38105">
        <property type="protein sequence ID" value="ABX38105"/>
        <property type="gene ID" value="Daci_5476"/>
    </dbReference>
    <dbReference type="GeneID" id="60689828"/>
    <dbReference type="KEGG" id="dac:Daci_5476"/>
    <dbReference type="eggNOG" id="COG0216">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_036856_0_1_4"/>
    <dbReference type="OMA" id="ISDHRVG"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016149">
        <property type="term" value="F:translation release factor activity, codon specific"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00093">
        <property type="entry name" value="Rel_fac_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005139">
        <property type="entry name" value="PCRF"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000352">
        <property type="entry name" value="Pep_chain_release_fac_I"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045853">
        <property type="entry name" value="Pep_chain_release_fac_I_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004373">
        <property type="entry name" value="RF-1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03462">
        <property type="entry name" value="PCRF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00472">
        <property type="entry name" value="RF-1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00937">
        <property type="entry name" value="PCRF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF75620">
        <property type="entry name" value="SSF75620"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00019">
        <property type="entry name" value="prfA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00745">
        <property type="entry name" value="RF_PROK_I"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword id="KW-0963">Cytoplasm</keyword>
    <keyword id="KW-0488">Methylation</keyword>
    <keyword id="KW-0648">Protein biosynthesis</keyword>
    <keyword id="KW-1185">Reference proteome</keyword>
    <feature type="chain" id="PRO_1000093448" description="Peptide chain release factor 1">
        <location>
            <begin position="1"/>
            <end position="360"/>
        </location>
    </feature>
    <feature type="modified residue" description="N5-methylglutamine" evidence="1">
        <location>
            <position position="235"/>
        </location>
    </feature>
    <evidence type="ECO:0000255" key="1">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00093"/>
        </source>
    </evidence>
    <sequence length="360" mass="40150" checksum="2A3109F3C41DBCC1" modified="2008-01-15" version="1">MQDFLRQQLERYAQRLEELNFLLSREDIMGDMKQYRAISREHADVTAIAGRYARHRQREADLAAAQDMLSDPDMADMAQEEIASAEAELVQLEDELQRLLLPKDPDDARNAYLEIRAGTGGDESALFAGDLARMYTRHCDAVGWKVEIMSANESELGGYKEVVLRVEGTDVYGRLRFESGGHRVQRVPATETQGRIHTSACTVAVMPEPDETQAITLNPADLRIDTFRASGAGGQHINKTDSAVRVVHLPTGIVAECQDGRSQHSNKAKALQVLQARLQEKERSEREAKEAALRKGLIGSGDRSDRIRTYNFPQGRLTDHRINLTIYKLLAVMEGDLGDVLDALQAAREAELLAELQVNN</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="75" xmlns="http://uniprot.org/uniprot">
    <accession>A9BPF3</accession>
    <name>A9BPF3_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Transcriptional regulator, LysR family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Daci_0174</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="4" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the LysR transcriptional regulatory family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX32820.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012202113.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_0174"/>
    <dbReference type="PRIDE" id="A9BPF3"/>
    <dbReference type="EnsemblBacteria" id="ABX32820">
        <property type="protein sequence ID" value="ABX32820"/>
        <property type="gene ID" value="Daci_0174"/>
    </dbReference>
    <dbReference type="GeneID" id="60690579"/>
    <dbReference type="KEGG" id="dac:Daci_0174"/>
    <dbReference type="eggNOG" id="COG0583">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_039613_6_0_4"/>
    <dbReference type="OMA" id="EHMRSEL"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003700">
        <property type="term" value="F:DNA-binding transcription factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005119">
        <property type="entry name" value="LysR_subst-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000847">
        <property type="entry name" value="Tscrpt_reg_HTH_LysR"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036390">
        <property type="entry name" value="WH_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00126">
        <property type="entry name" value="HTH_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03466">
        <property type="entry name" value="LysR_substrate"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46785">
        <property type="entry name" value="SSF46785"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50931">
        <property type="entry name" value="HTH_LYSR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HTH lysR-type" evidence="2">
        <location>
            <begin position="5"/>
            <end position="62"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00009437"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS50931"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ABX32820.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="304" mass="33769" checksum="94C9D2471AC1FE5E" modified="2008-01-15" version="1">MAMHFDLVDLRLMVHIADANSMTRGAELSFISLPAASTRIKNLEESIGTKLLYRTSQGVTLTPPGQAFVTHARMVLGQIEHLRGDMQEYVRGIKGHVRVFANTTSLGEFLPPVLRHYLRRNPDVNIDLRERLSHDIVRAVTEGQTDIGIVAGLVRTENLETLPYRRDRLVLVVPRGHALDGEMQMAFADTLDLDHVGLHESSAIHAFLRQASDQLHRPIKQRIQVGNFETACRMIESGVGVGVLPESAASRHAHSMDIAIVPLSDAWSVREMQICVRSLEALPSFAQELVELLVADAQGRLTLE</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="59" xmlns="http://uniprot.org/uniprot">
    <accession>A9BPH2</accession>
    <name>A9BPH2_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Acetyl-CoA hydrolase/transferase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Daci_0193</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="4" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the acetyl-CoA hydrolase/transferase family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX32839.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012202132.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_0193"/>
    <dbReference type="PRIDE" id="A9BPH2"/>
    <dbReference type="EnsemblBacteria" id="ABX32839">
        <property type="protein sequence ID" value="ABX32839"/>
        <property type="gene ID" value="Daci_0193"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_0193"/>
    <dbReference type="eggNOG" id="COG0427">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_030703_0_1_4"/>
    <dbReference type="OMA" id="RRWAHRN"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008775">
        <property type="term" value="F:acetate CoA-transferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003986">
        <property type="term" value="F:acetyl-CoA hydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006083">
        <property type="term" value="P:acetate metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0019679">
        <property type="term" value="P:propionate metabolic process, methylcitrate cycle"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.1080.20">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR026888">
        <property type="entry name" value="AcetylCoA_hyd_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038460">
        <property type="entry name" value="AcetylCoA_hyd_C_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003702">
        <property type="entry name" value="ActCoA_hydro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037171">
        <property type="entry name" value="NagB/RpiA_transferase-like"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13336">
        <property type="entry name" value="AcetylCoA_hyd_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02550">
        <property type="entry name" value="AcetylCoA_hydro"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF100950">
        <property type="entry name" value="SSF100950"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="AcetylCoA_hyd_C" evidence="2">
        <location>
            <begin position="272"/>
            <end position="421"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00009632"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF13336"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ABX32839.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="433" mass="45219" checksum="C1D4957DD5C27991" modified="2008-01-15" version="1">MSVLSPDALQERLQALIRPGDTLWWGQATAEPLTLTRAVVAHRHALARHGGQGRLRVFVGMGASDTLQPAHADAIDFFGYAAGGPHRALAQAGVLDILPSHYSHLPGLIDEGLLPADVVLLQVSPPDAQGRYSLGLVHEYLPAAIRKARVLIGEVNPAIPWTHGSLHLQAGDFALLVDAEHPPLDQARSAPGPAEQAIAGHVAALIEDGATLQVGVGNLPEAVLAALHGHRDLGLHSGAVGDGIAALAEAGVLTHARKSQDRGVGIGGILMGGESLRRWAHRNPALQLRETRYTHDPEVLAASHRLAAINSAVEVDLTGQINSEVAGGVYVGAVGGAVDFLRGAARSRGGLPIIALSATARGATRIVARLSGPVSTPRSDAGLIVTEHGVADLRGQTLSRRVKRLIDIAAPEHRADLEQQAHTLLRQCGAAFS</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="91" xmlns="http://uniprot.org/uniprot">
    <accession>A9BPM9</accession>
    <name>A9BPM9_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="2 7">Glutamyl-tRNA(Gln) amidotransferase subunit A</fullName>
            <shortName evidence="7">Glu-ADT subunit A</shortName>
            <ecNumber evidence="7">6.3.5.7</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="7" type="primary">gatA</name>
        <name evidence="9" type="ordered locus">Daci_0352</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="9 10" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="10" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="7">Allows the formation of correctly charged Gln-tRNA(Gln) through the transamidation of misacylated Glu-tRNA(Gln) in organisms which lack glutaminyl-tRNA synthetase. The reaction takes place in the presence of glutamine and ATP through an activated gamma-phospho-Glu-tRNA(Gln).</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="7">
            <text>ATP + H2O + L-glutamine + L-glutamyl-tRNA(Gln) = ADP + H(+) + L-glutamate + L-glutaminyl-tRNA(Gln) + phosphate</text>
            <dbReference type="Rhea" id="RHEA:17521"/>
            <dbReference type="Rhea" id="RHEA-COMP:9681"/>
            <dbReference type="Rhea" id="RHEA-COMP:9684"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:29985"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:43474"/>
            <dbReference type="ChEBI" id="CHEBI:58359"/>
            <dbReference type="ChEBI" id="CHEBI:78520"/>
            <dbReference type="ChEBI" id="CHEBI:78521"/>
            <dbReference type="ChEBI" id="CHEBI:456216"/>
            <dbReference type="EC" id="6.3.5.7"/>
        </reaction>
    </comment>
    <comment type="subunit">
        <text evidence="1 7">Heterotrimer of A, B and C subunits.</text>
    </comment>
    <comment type="similarity">
        <text evidence="7">Belongs to the amidase family. GatA subfamily.</text>
    </comment>
    <dbReference type="EC" id="6.3.5.7" evidence="7"/>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX32998.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012202291.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_0352"/>
    <dbReference type="PRIDE" id="A9BPM9"/>
    <dbReference type="EnsemblBacteria" id="ABX32998">
        <property type="protein sequence ID" value="ABX32998"/>
        <property type="gene ID" value="Daci_0352"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_0352"/>
    <dbReference type="eggNOG" id="COG0154">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_009600_0_3_4"/>
    <dbReference type="OMA" id="EVSCPHF"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030956">
        <property type="term" value="C:glutamyl-tRNA(Gln) amidotransferase complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0050567">
        <property type="term" value="F:glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016740">
        <property type="term" value="F:transferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006412">
        <property type="term" value="P:translation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.1300.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00120">
        <property type="entry name" value="GatA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000120">
        <property type="entry name" value="Amidase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023631">
        <property type="entry name" value="Amidase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036928">
        <property type="entry name" value="AS_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004412">
        <property type="entry name" value="GatA"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11895">
        <property type="entry name" value="PTHR11895"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01425">
        <property type="entry name" value="Amidase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF75304">
        <property type="entry name" value="SSF75304"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00132">
        <property type="entry name" value="gatA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5 7" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="3 7" id="KW-0436">Ligase</keyword>
    <keyword evidence="4 7" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="6 7" id="KW-0648">Protein biosynthesis</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="9" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Amidase" evidence="8">
        <location>
            <begin position="30"/>
            <end position="478"/>
        </location>
    </feature>
    <feature type="active site" description="Charge relay system" evidence="7">
        <location>
            <position position="82"/>
        </location>
    </feature>
    <feature type="active site" description="Charge relay system" evidence="7">
        <location>
            <position position="165"/>
        </location>
    </feature>
    <feature type="active site" description="Acyl-ester intermediate" evidence="7">
        <location>
            <position position="189"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00011123"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00014428"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022598"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022917"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00120"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="Pfam" id="PF01425"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="ABX32998.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="498" mass="52475" checksum="30F872C1F63D030C" modified="2008-01-15" version="1">MTQQTTDLHTLGVSALSALLRERKLGAVEAAQHFLARAQAHQNLGAFVSIDEEATLAQARAADALIAQGKGGRLAGVPIAHKDIFVTRDFPTTASSKMLAGYRSPFDATVVTRLAEAGAVTLGKLNCDEFAMGSANENSAIAPVGFDAPAPVRNPWNTDRVPGGSSGGSAVAVAAGLAPAVTGTDTGGSIRQPASFCGITGIKPTYGRASRYGMIAFASSLDQAGPMGKSAEDCALLLSEMCGPDLDRDSTSLDVPAEDFTARLNDGIEGLRIGIPAEFFGEGLSADVRAAVDGALKEYEKLGARLVPISLPRTELSIPVYYILAPAEASSNLSRFDGVKFGHRAKNYTDLVDMYKKTRAEGFGDEVKRRIMIGAYVLSEGYYDAYYLQAQKIRRMIADDFQAAFQQCDVIAGPAAPTVAWQLGGKSDPLANYLADIFTLPASLAGLPGMSVPAGFGEAGMPVGLQLIGNYFKEGQLLNAAHRFQQATDFHLQAPKGI</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="65" xmlns="http://uniprot.org/uniprot">
    <accession>A9BPZ2</accession>
    <name>A9BPZ2_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Glycosyl transferase family 2</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ordered locus">Daci_0561</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="5" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX33207.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012202493.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_0561"/>
    <dbReference type="CAZy" id="GT2">
        <property type="family name" value="Glycosyltransferase Family 2"/>
    </dbReference>
    <dbReference type="PRIDE" id="A9BPZ2"/>
    <dbReference type="EnsemblBacteria" id="ABX33207">
        <property type="protein sequence ID" value="ABX33207"/>
        <property type="gene ID" value="Daci_0561"/>
    </dbReference>
    <dbReference type="GeneID" id="60690904"/>
    <dbReference type="KEGG" id="dac:Daci_0561"/>
    <dbReference type="eggNOG" id="COG0463">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_033536_0_1_4"/>
    <dbReference type="OMA" id="NKNYGQT"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016740">
        <property type="term" value="F:transferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.550.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001173">
        <property type="entry name" value="Glyco_trans_2-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029044">
        <property type="entry name" value="Nucleotide-diphossugar_trans"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00535">
        <property type="entry name" value="Glycos_transf_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53448">
        <property type="entry name" value="SSF53448"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0472">Membrane</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1 4" id="KW-0808">Transferase</keyword>
    <keyword evidence="2" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="2" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="248"/>
            <end position="269"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="281"/>
            <end position="306"/>
        </location>
    </feature>
    <feature type="domain" description="Glyco_trans_2-like" evidence="3">
        <location>
            <begin position="25"/>
            <end position="162"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF00535"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="ABX33207.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="334" mass="36651" checksum="1EAD07ACEFF20443" modified="2008-01-15" version="1">MTELHADIAPAAPKGMLPRPPLRLSCVVPAHNEEGNLEAFLRALDATVRTLTPDYELIVVNDGSRDATHEIALRMAQELPVRYLALSRNFGKEAALSAGIDHARGNAVVLIDADFQHPLEMLPQMCELWQSGYDMVYGVIADRGAESGAKRVGTNLFYRLMNAGNLVKIPPNAGDFRWLDRCVADALKALPESHRFMKGLYAWVGFKAAALPFVPADRTAGASSFNFRRLGSLALLGLTSFTTLPLRVWSVVGGIISLAALLYGLWITMETLIFGNPLDGWPTLAASIMLFSGVQLMSIGILGEYIGRIYDEVKRRPTYLLARDEDRSPLAPRD</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="58" xmlns="http://uniprot.org/uniprot">
    <accession>A9BQC1</accession>
    <name>A9BQC1_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Protein tyrosine/serine phosphatase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Daci_0885</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="2" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX33531.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_0885"/>
    <dbReference type="PRIDE" id="A9BQC1"/>
    <dbReference type="EnsemblBacteria" id="ABX33531">
        <property type="protein sequence ID" value="ABX33531"/>
        <property type="gene ID" value="Daci_0885"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_0885"/>
    <dbReference type="eggNOG" id="COG2365">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_057546_0_0_4"/>
    <dbReference type="OMA" id="HTIFDFR"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004721">
        <property type="term" value="F:phosphoprotein phosphatase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016311">
        <property type="term" value="P:dephosphorylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.190.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029021">
        <property type="entry name" value="Prot-tyrosine_phosphatase-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR026893">
        <property type="entry name" value="Tyr/Ser_Pase_IphP-type"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016130">
        <property type="entry name" value="Tyr_Pase_AS"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13350">
        <property type="entry name" value="Y_phosphatase3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52799">
        <property type="entry name" value="SSF52799"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00383">
        <property type="entry name" value="TYR_PHOSPHATASE_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ABX33531.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="275" mass="29795" checksum="3606097494B5CF20" modified="2008-01-15" version="1">MGATHAWANLAGMDTEMLTPAAAAAAASSPAPSRSIRLDGASNFRDLGGYAGLDGRRVRWRTLFRADHLAGLSAADLDVLHGLKLARSADFRGKMESAHLAYEWPGIARHALIVEPTVVQRASALIAAGNDLTAAHAEELMQDTYRSFVHDYAPRFAQLFQLLLDSQDPLVFHCTAGKDRTGWAAALLLTALGVDEDTVMQDYLLTNQLYQRPATTFAPMPAEVMDVLWRVQASYLAAATDMVRADFGGMEGYLRDALGIDSAARERLAALYLEG</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="41" xmlns="http://uniprot.org/uniprot">
    <accession>A9BR64</accession>
    <name>A9BR64_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Daci_0476</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="2" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX33122.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012202408.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_0476"/>
    <dbReference type="PRIDE" id="A9BR64"/>
    <dbReference type="EnsemblBacteria" id="ABX33122">
        <property type="protein sequence ID" value="ABX33122"/>
        <property type="gene ID" value="Daci_0476"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_0476"/>
    <dbReference type="eggNOG" id="ENOG5033B5B">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_139006_0_0_4"/>
    <dbReference type="OMA" id="HAILHCC"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ABX33122.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="157" mass="16534" checksum="1A31FA9C01C79BA5" modified="2008-01-15" version="1">MTMTRMFRRFVCRLMLGVLVFGQLAIAAYACPALSGMPQSLPTMALNASAAAMPGDEAGAAMAVSPDMVATSDMAAMASCDQIDDNAANLCVEHCRFGQQSADHASAPTVPAALLTTLYTLPVQPEPLGHGWPSADVIFRRVAASPPHAILHCCFRI</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="60" xmlns="http://uniprot.org/uniprot">
    <accession>A9BR87</accession>
    <name>A9BR87_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="3">RND efflux system, outer membrane lipoprotein, NodT family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Daci_0499</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="4" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="2">Cell membrane</location>
            <topology evidence="2">Lipid-anchor</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="1 2">Belongs to the outer membrane factor (OMF) (TC 1.B.17) family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX33145.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012202431.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_0499"/>
    <dbReference type="PRIDE" id="A9BR87"/>
    <dbReference type="EnsemblBacteria" id="ABX33145">
        <property type="protein sequence ID" value="ABX33145"/>
        <property type="gene ID" value="Daci_0499"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_0499"/>
    <dbReference type="eggNOG" id="COG1538">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_012817_13_3_4"/>
    <dbReference type="OMA" id="NYEQSYA"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015562">
        <property type="term" value="F:efflux transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003423">
        <property type="entry name" value="OMP_efflux"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010131">
        <property type="entry name" value="RND_efflux_OM_lipoprot_NodT"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02321">
        <property type="entry name" value="OEP"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01845">
        <property type="entry name" value="outer_NodT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2 3" id="KW-0449">Lipoprotein</keyword>
    <keyword evidence="2" id="KW-0472">Membrane</keyword>
    <keyword evidence="2" id="KW-0564">Palmitate</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="2" id="KW-1134">Transmembrane beta strand</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00007613"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="RuleBase" id="RU362097"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ABX33145.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="485" mass="51898" checksum="2E907E80809DEF3F" modified="2008-01-15" version="1">MINRSTPVAIATAVLLAGCSLIPTYERPAAPVAAQYTRANATAAAEGGTAAAQLPWQDFFQDARLQQLVRTALDNNRDLRVAALNIERAQAQYRITRADQFPTVGAGVNASRAPNTTGSGAKYVNSYQVGLAVTSWELDFFGRIGSLKEAALAQYLATEEARRAAQTSLVAAVASGWYTLLADEQLLKISRDTLRTREESIKLTKLRFDTGVASELDYRQAVSLTEAARATLAQQQRQRALDENALVLLLGQALPADVLASLGSSQGLRDTADLPAVPAGLPSDLLTQRPDIRQAEQQLISANANIGAARAAFFPRITLTGQFGTASNELSGLFKSGSWGFTLAPSALLPIFDAGRNSANLAAAKVEREVAIAQYEKSIQSAFREVSDALDSQGTLRDQIMAQRAQLEAEQARLKLSDLRYSNGVASYLDLLDAQRTLFALEQSTVSVRLAQLLNQIELYKALGGGWTDRTATAAAATPATAPAQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="36" xmlns="http://uniprot.org/uniprot">
    <accession>A9BRI9</accession>
    <name>A9BRI9_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Daci_0704</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="2" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX33350.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_0704"/>
    <dbReference type="PRIDE" id="A9BRI9"/>
    <dbReference type="EnsemblBacteria" id="ABX33350">
        <property type="protein sequence ID" value="ABX33350"/>
        <property type="gene ID" value="Daci_0704"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_0704"/>
    <dbReference type="eggNOG" id="ENOG5032BYX">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_064907_0_0_4"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR021815">
        <property type="entry name" value="DUF3396"/>
    </dbReference>
    <dbReference type="Pfam" id="PF11876">
        <property type="entry name" value="DUF3396"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ABX33350.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="369" mass="41398" checksum="6415AD84CFB8D6D9" modified="2008-01-15" version="1">MGKITMAAEHDFNWPFGNEEADAATVATMDILKALVLQNQFGRICARAGWTIEMVFHDGDSLAVRERSWKVVDLFCEAVGKEKLVYWYDGMPAMLTSAIAQRKLAAKKQKSFDNPKGYALIFHMASGKPNPPEVWENNAQDFRLYCRIENDEGIWYRERYGSIKKGPAMSFIRMAFPAWWIMDQPPERNVGRLTTQIVELMQPYWAIAGWGVMPAVEERNIGPDGKGQQILYPYLQRFPGLNALGSLALMSHDFNNAMYSINWLSFVSDALLEKLGGREAVRKQVEASQYLSAGDVGNCLGIRAGDFPGLGDMGKGLTLPAFGEAARLLKPIRAKSRLNNFIGPPPSGSDDEDAWQLACDAYMRRFDEF</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2021-06-02" version="45" xmlns="http://uniprot.org/uniprot">
    <accession>A9BRV8</accession>
    <name>A9BRV8_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Putative integral membrane protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_1029</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX33675.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012202961.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_1029"/>
    <dbReference type="EnsemblBacteria" id="ABX33675">
        <property type="protein sequence ID" value="ABX33675"/>
        <property type="gene ID" value="Daci_1029"/>
    </dbReference>
    <dbReference type="GeneID" id="60685591"/>
    <dbReference type="KEGG" id="dac:Daci_1029"/>
    <dbReference type="eggNOG" id="COG5477">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_151927_1_0_4"/>
    <dbReference type="OMA" id="FSWMAWT"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018678">
        <property type="entry name" value="DUF2160_TM"/>
    </dbReference>
    <dbReference type="Pfam" id="PF09928">
        <property type="entry name" value="DUF2160"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="6"/>
            <end position="30"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="51"/>
            <end position="68"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="80"/>
            <end position="99"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX33675.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="102" mass="11567" checksum="660B6E33AE6E6C84" modified="2008-01-15" version="1">MFSWMAWTLPVAVFFSCIVLMLVGMTLWELRSPTVMRKGWLPMATTRGDRLFIGLLLAAYVNLAWVGLGERMAQWFSLEAEPSVWISLVLSMLVLAVVMRKG</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="44" xmlns="http://uniprot.org/uniprot">
    <accession>A9BS03</accession>
    <name>A9BS03_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_0767</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX33413.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012202699.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_0767"/>
    <dbReference type="PRIDE" id="A9BS03"/>
    <dbReference type="EnsemblBacteria" id="ABX33413">
        <property type="protein sequence ID" value="ABX33413"/>
        <property type="gene ID" value="Daci_0767"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_0767"/>
    <dbReference type="eggNOG" id="ENOG50338ZA">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_096040_0_0_4"/>
    <dbReference type="OMA" id="WALQPAG"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="7"/>
            <end position="29"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="35"/>
            <end position="54"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX33413.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="207" mass="22689" checksum="37B82BA28D8459E5" modified="2008-01-15" version="1">MRRLQLFFYGNGNLAGLALALLGPVLLFAGVIGAGWGWITLGLYVAGLLLGWALQPAGASFERALQQHWSAEDIRERIDELVQKARPMLTPEMQKHLDSVRGSVHEVLPSLADAGPVFNDGLFTVRETVLQYLPATLSHYAALPPLFRVTQPVQDGKTPRQLLTEQLALLAGQMQQVVAHVAASDAQALLANGRFLKQKFDQPDFLK</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="74" xmlns="http://uniprot.org/uniprot">
    <accession>A9BS99</accession>
    <name>A9BS99_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Twitching motility protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Daci_1068</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="4" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the GSP E family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX33713.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012202999.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_1068"/>
    <dbReference type="PRIDE" id="A9BS99"/>
    <dbReference type="EnsemblBacteria" id="ABX33713">
        <property type="protein sequence ID" value="ABX33713"/>
        <property type="gene ID" value="Daci_1068"/>
    </dbReference>
    <dbReference type="GeneID" id="60685630"/>
    <dbReference type="KEGG" id="dac:Daci_1068"/>
    <dbReference type="eggNOG" id="COG2805">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_013446_4_0_4"/>
    <dbReference type="OMA" id="WELDCSY"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd01131">
        <property type="entry name" value="PilT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006321">
        <property type="entry name" value="PilT/PilU"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001482">
        <property type="entry name" value="T2SS/T4SS"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00437">
        <property type="entry name" value="T2SSE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01420">
        <property type="entry name" value="pilT_fam"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00662">
        <property type="entry name" value="T2SP_E"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="T2SP_E" evidence="2">
        <location>
            <begin position="193"/>
            <end position="207"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00006611"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS00662"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ABX33713.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="347" mass="38309" checksum="A847CFDC337E61C6" modified="2008-01-15" version="1">MDITQLLAFSVKNKASDLHLSAGLPPMIRVHGDVRRINVDPLDHKTVHAMVYDIMSDSQRKAYEEFLEVDFSFEIEGLARFRVNAFNQYRGAAAVFRTIPSKILTLEQLNAPRIFGDLALKPRGLVLVTGPTGSGKSTTLAGMVNHLNETEYGHILTVEDPIEFVHDSKKCLINQREVGPMTQSFSAALRSALREDPDAILVGEMRDLETIRLAMTAAETGHLVFGTLHTSSAAKTIDRIIDVFPAEEKEMVRAMLSESLQAVISQTLCKTKDGQGRIAAHEIMLGTSAIRNLIREAKVAQMYSTIQTSQNVGMQTLDQNLTDLVRRNLISPAEARAKAKIPDNFPG</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-05-25" version="81" xmlns="http://uniprot.org/uniprot">
    <accession>A9BSJ2</accession>
    <name>A9BSJ2_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Transcriptional regulator, MarR family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_1353</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX33997.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012203283.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_1353"/>
    <dbReference type="EnsemblBacteria" id="ABX33997">
        <property type="protein sequence ID" value="ABX33997"/>
        <property type="gene ID" value="Daci_1353"/>
    </dbReference>
    <dbReference type="GeneID" id="60685911"/>
    <dbReference type="KEGG" id="dac:Daci_1353"/>
    <dbReference type="eggNOG" id="COG1846">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_083287_4_0_4"/>
    <dbReference type="OMA" id="IDLYDQP"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003700">
        <property type="term" value="F:DNA-binding transcription factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000835">
        <property type="entry name" value="HTH_MarR-typ"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036390">
        <property type="entry name" value="WH_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01047">
        <property type="entry name" value="MarR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00347">
        <property type="entry name" value="HTH_MARR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46785">
        <property type="entry name" value="SSF46785"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50995">
        <property type="entry name" value="HTH_MARR_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HTH marR-type" evidence="1">
        <location>
            <begin position="1"/>
            <end position="143"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS50995"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX33997.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="157" mass="17698" checksum="874F65DFC55E569F" modified="2008-01-15" version="1">MVHSASDPLSIDLYDQPGHLIRRAQQIAAQLFRDVLGPDVTPVQYAILRMLQEKPGIDQVTLARLVALDNSTTADIAARLEAKGWVLREILPRRQRRLTLTAEGETMLAGFVPNVHELHERMLAALEPQEQAEFKRLLRKFVQLHDARDTLDASSSD</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="30" xmlns="http://uniprot.org/uniprot">
    <accession>A9BSR2</accession>
    <name>A9BSR2_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Daci_1423</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="2" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX34067.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="PRIDE" id="A9BSR2"/>
    <dbReference type="EnsemblBacteria" id="ABX34067">
        <property type="protein sequence ID" value="ABX34067"/>
        <property type="gene ID" value="Daci_1423"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_1423"/>
    <dbReference type="HOGENOM" id="CLU_509705_0_0_4"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ABX34067.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="534" mass="52886" checksum="1AA827001AE991C5" modified="2008-01-15" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="60" xmlns="http://uniprot.org/uniprot">
    <accession>A9BSR3</accession>
    <name>A9BSR3_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Adhesin HecA family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Daci_1424</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="4" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX34068.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_1424"/>
    <dbReference type="PRIDE" id="A9BSR3"/>
    <dbReference type="EnsemblBacteria" id="ABX34068">
        <property type="protein sequence ID" value="ABX34068"/>
        <property type="gene ID" value="Daci_1424"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_1424"/>
    <dbReference type="eggNOG" id="COG3210">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_232968_0_0_4"/>
    <dbReference type="OMA" id="NTFEMHN"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004549">
        <property type="term" value="F:tRNA-specific ribonuclease activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd13442">
        <property type="entry name" value="CDI_toxin_Bp1026b_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR033806">
        <property type="entry name" value="CDI_toxin_Bp1026b-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010069">
        <property type="entry name" value="CdiA_FHA1_rpt"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025157">
        <property type="entry name" value="Hemagglutinin_rpt"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13332">
        <property type="entry name" value="Fil_haemagg_2"/>
        <property type="match status" value="4"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01731">
        <property type="entry name" value="fil_hemag_20aa"/>
        <property type="match status" value="7"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="467"/>
            <end position="486"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="628"/>
            <end position="705"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="1404"/>
            <end position="1428"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="1580"/>
            <end position="1641"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="1856"/>
            <end position="1939"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="2">
        <location>
            <begin position="1607"/>
            <end position="1624"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="2">
        <location>
            <begin position="1870"/>
            <end position="1894"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004496"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ABX34068.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="2061" mass="205810" checksum="3F310B333B1299A0" modified="2008-01-15" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="67" xmlns="http://uniprot.org/uniprot">
    <accession>A9BSS6</accession>
    <name>A9BSS6_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">Fumarate hydratase</fullName>
            <ecNumber evidence="2">4.2.1.2</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="6" type="ordered locus">Daci_1437</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="7" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the class-II fumarase/aspartase family. Fumarase subfamily.</text>
    </comment>
    <dbReference type="EC" id="4.2.1.2" evidence="2"/>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX34081.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012203367.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_1437"/>
    <dbReference type="PRIDE" id="A9BSS6"/>
    <dbReference type="EnsemblBacteria" id="ABX34081">
        <property type="protein sequence ID" value="ABX34081"/>
        <property type="gene ID" value="Daci_1437"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_1437"/>
    <dbReference type="eggNOG" id="COG0114">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_021594_4_1_4"/>
    <dbReference type="OMA" id="AKPVLIH"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0045239">
        <property type="term" value="C:tricarboxylic acid cycle enzyme complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004333">
        <property type="term" value="F:fumarate hydratase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006106">
        <property type="term" value="P:fumarate metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006099">
        <property type="term" value="P:tricarboxylic acid cycle"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.275.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005677">
        <property type="entry name" value="Fum_hydII"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR024083">
        <property type="entry name" value="Fumarase/histidase_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018951">
        <property type="entry name" value="Fumarase_C_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000362">
        <property type="entry name" value="Fumarate_lyase_fam"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR022761">
        <property type="entry name" value="Fumarate_lyase_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008948">
        <property type="entry name" value="L-Aspartase-like"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11444">
        <property type="entry name" value="PTHR11444"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF10415">
        <property type="entry name" value="FumaraseC_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00206">
        <property type="entry name" value="Lyase_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00149">
        <property type="entry name" value="FUMRATELYASE"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48557">
        <property type="entry name" value="SSF48557"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="6" id="KW-0456">Lyase</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Lyase_1" evidence="4">
        <location>
            <begin position="25"/>
            <end position="354"/>
        </location>
    </feature>
    <feature type="domain" description="FumaraseC_C" evidence="5">
        <location>
            <begin position="421"/>
            <end position="472"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="3">
        <location>
            <begin position="129"/>
            <end position="155"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00009084"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00012921"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="Pfam" id="PF00206"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="Pfam" id="PF10415"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="ABX34081.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="477" mass="50935" checksum="731CD1F1D9BB2F26" modified="2008-01-15" version="1">MDQTRTQAQAPTQAHTRIEHDAFGPVHIPADRLWGAQTQRALELFTIGEERFPQGLYRAFGLQKLAAARANRRLGVLDDERGAAIEAAAAELRDGLLDAHFPLTIWQTGSGTQTNMNANEVIANRANQMLGQPPGTRSPVHPNDHANASQSSNDSFPTVMHLATALELRDHLLPALEQLQQRLQERALAFAGVLKVARTHLMDAVPMTLGQSFETFAHQVGHGIHRLQATQPRLWSLAQGGTAAGTGLNAPSGFDRVFCEEIQALTGLAVTPNPCKFEGMAAHDALIEVSGALNVVAGSLAKMANDIRLLGSGPRCGLGELVFPDDGLSSSIMPGKRNPTVAEVVVQAAYQAMGHHLTVTLAGSAGHFELNVAKPVLIHHLLRAMLALGDASRVFAEKLVAGLQAHTERLEQQVSHSLLQATALNPVLGYDAVARITREAMARGIAPRQAAVALGLITAAEYDRLVDLRAMAGLPPA</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="79" xmlns="http://uniprot.org/uniprot">
    <accession>A9BST2</accession>
    <name>A9BST2_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Transcriptional regulator, LysR family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Daci_1443</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="4" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the LysR transcriptional regulatory family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX34087.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012203373.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_1443"/>
    <dbReference type="PRIDE" id="A9BST2"/>
    <dbReference type="EnsemblBacteria" id="ABX34087">
        <property type="protein sequence ID" value="ABX34087"/>
        <property type="gene ID" value="Daci_1443"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_1443"/>
    <dbReference type="eggNOG" id="COG0583">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_039613_6_1_4"/>
    <dbReference type="OMA" id="QHRDYAS"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003700">
        <property type="term" value="F:DNA-binding transcription factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005119">
        <property type="entry name" value="LysR_subst-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000847">
        <property type="entry name" value="Tscrpt_reg_HTH_LysR"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036390">
        <property type="entry name" value="WH_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00126">
        <property type="entry name" value="HTH_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03466">
        <property type="entry name" value="LysR_substrate"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00039">
        <property type="entry name" value="HTHLYSR"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46785">
        <property type="entry name" value="SSF46785"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50931">
        <property type="entry name" value="HTH_LYSR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HTH lysR-type" evidence="2">
        <location>
            <begin position="1"/>
            <end position="58"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00009437"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS50931"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ABX34087.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="311" mass="34094" checksum="600648145EECA9C6" modified="2008-01-15" version="1">MNLRFLETFVLLAELRNFRLTAERLYTTQAAVSSRIATLEQEFGVRLFDRGVREVTLTADGAKALVHAERMLRLMREMREDMLDKQAYAGVIRIGAIESIVHSWFPDFLALLQQRYPRLQVEIACDTTLHMSEQLVKGQLDLSLQAKPVTAAGVGHLSLGEFPMAWVGSPKLGIGDETLSLAELAAFPIMCFARGSEPYAVIEQLFSTESSASVHLNCIASVATMIRVVCDGLGVAAVPPAIIQRELAEQRLRLLRVDREFPSLPLVACFRNDHQNPLTEVVARAAEETAAAFALNHGQAVARLPGSGLGG</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="55" xmlns="http://uniprot.org/uniprot">
    <accession>A9BSV5</accession>
    <name>A9BSV5_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Biotin synthesis protein BioC</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Daci_1672</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="2" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX34315.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012203600.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_1672"/>
    <dbReference type="PRIDE" id="A9BSV5"/>
    <dbReference type="EnsemblBacteria" id="ABX34315">
        <property type="protein sequence ID" value="ABX34315"/>
        <property type="gene ID" value="Daci_1672"/>
    </dbReference>
    <dbReference type="GeneID" id="60686161"/>
    <dbReference type="KEGG" id="dac:Daci_1672"/>
    <dbReference type="eggNOG" id="COG4106">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_046586_2_1_4"/>
    <dbReference type="OMA" id="DMHDWGD"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.150">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029063">
        <property type="entry name" value="SAM-dependent_MTases_sf"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53335">
        <property type="entry name" value="SSF53335"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ABX34315.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="300" mass="34398" checksum="D33D0866D53DA676" modified="2008-01-15" version="1">MSHELPPTIDPAAALRWQQAAPAASPWLHEEVARRMQERLDWIVKPPQRWCHWQPVRGGLQAHALLRQRYAQSECLVYEASPLHEAAAREQLGARWWQPARWTGGATRFGEPEPAGVDMLWANMALHQQADPQALITRWHQALSVDGYVMFSCLGPDTLRELHAIYAQLGWPPAGQAFTDMHDWGDMLVHAGFSEPVMDMEHITLTFATPERLLQELRELGRNFHPQRFAALRGRRWQQRLHDALRERLAGPDGQLALTFEIVYGHAYKPQPRVRLESSSAVSLEDMRSMLRQPRNTGLR</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="64" xmlns="http://uniprot.org/uniprot">
    <accession>A9BSW0</accession>
    <name>A9BSW0_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="4">Cytochrome c oxidase assembly protein CtaG</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="11" type="ordered locus">Daci_1677</name>
    </gene>
    <organism evidence="11 12">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="11 12" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="12">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="12" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="12">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="1">Exerts its effect at some terminal stage of cytochrome c oxidase synthesis, probably by being involved in the insertion of the copper B into subunit I.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="2">Cell inner membrane</location>
            <topology evidence="2">Single-pass type II membrane protein</topology>
            <orientation evidence="2">Periplasmic side</orientation>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="3">Belongs to the COX11/CtaG family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX34320.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_1677"/>
    <dbReference type="PRIDE" id="A9BSW0"/>
    <dbReference type="EnsemblBacteria" id="ABX34320">
        <property type="protein sequence ID" value="ABX34320"/>
        <property type="gene ID" value="Daci_1677"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_1677"/>
    <dbReference type="eggNOG" id="COG3175">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_045000_5_2_4"/>
    <dbReference type="OMA" id="NKLECFC"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005507">
        <property type="term" value="F:copper ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.370.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023471">
        <property type="entry name" value="CtaG/Cox11_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007533">
        <property type="entry name" value="Cyt_c_oxidase_assmbl_CtaG"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04442">
        <property type="entry name" value="CtaG_Cox11"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF005413">
        <property type="entry name" value="COX11"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF110111">
        <property type="entry name" value="SSF110111"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="8" id="KW-0186">Copper</keyword>
    <keyword evidence="9 10" id="KW-0472">Membrane</keyword>
    <keyword evidence="12" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="6" id="KW-0735">Signal-anchor</keyword>
    <keyword evidence="5 10" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="7 10" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="10">
        <location>
            <begin position="6"/>
            <end position="23"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004007"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00004382"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00009620"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00015384"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022968"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00023008"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="EMBL" id="ABX34320.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="197" mass="21574" checksum="AB6999B9C357914E" modified="2008-01-15" version="1">MVGKLAVVALGMFAFGYVLIPIYKHICELTGINILSLSERQVPGNGTAGRDVKLPANSQVDKSRTITVEFDANARGPWDFKPAQRSIQVHPGELATVMYEFQNVQDRRMAAQAIPSYAPRQAAAHFNKLECFCFSQYTLEPGEKREWPVAFVIDPRISKDVTTITLSYTFFEVGGRTPAAPTGEAPVAAGPKQEPAS</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-01-19" version="41" xmlns="http://uniprot.org/uniprot">
    <accession>A9BSX8</accession>
    <name>A9BSX8_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Daci_1695</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="2" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX34338.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012203623.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_1695"/>
    <dbReference type="EnsemblBacteria" id="ABX34338">
        <property type="protein sequence ID" value="ABX34338"/>
        <property type="gene ID" value="Daci_1695"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_1695"/>
    <dbReference type="eggNOG" id="ENOG503383V">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_105444_2_0_4"/>
    <dbReference type="OMA" id="LITRSEC"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ABX34338.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="158" mass="17855" checksum="DF10F58E4AE4394B" modified="2008-01-15" version="1">MSLPSIAAPIVFLDFDGVLHPEFCHESKHFCCLPLMEDLLRQASTCLVVISSTWRLQAPVEKLRKHFSPDIADRILGVTPHYPELRDVPNTLLGYHRQAECRAWLWANNSAHLPWLAVDDRPWLFMPFCGSLFVTNGLEGVTEGVAPQLAARLHRLTS</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="57" xmlns="http://uniprot.org/uniprot">
    <accession>A9BT70</accession>
    <name>A9BT70_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Cobaltochelatase</fullName>
            <ecNumber evidence="2">6.6.1.2</ecNumber>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_1995</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EC" id="6.6.1.2" evidence="2"/>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX34635.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012203920.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_1995"/>
    <dbReference type="PRIDE" id="A9BT70"/>
    <dbReference type="EnsemblBacteria" id="ABX34635">
        <property type="protein sequence ID" value="ABX34635"/>
        <property type="gene ID" value="Daci_1995"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_1995"/>
    <dbReference type="eggNOG" id="COG4547">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_031624_0_0_4"/>
    <dbReference type="OMA" id="WKGGQAR"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051116">
        <property type="term" value="F:cobaltochelatase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009236">
        <property type="term" value="P:cobalamin biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.410">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006538">
        <property type="entry name" value="CobT"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025861">
        <property type="entry name" value="CobT_VWA_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036465">
        <property type="entry name" value="vWFA_dom_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF06213">
        <property type="entry name" value="CobT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF11775">
        <property type="entry name" value="CobT_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF031715">
        <property type="entry name" value="Cob_chel_CobT"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53300">
        <property type="entry name" value="SSF53300"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0436">Ligase</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="CobT_C" evidence="1">
        <location>
            <begin position="346"/>
            <end position="560"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF11775"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX34635.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="563" mass="61882" checksum="3E03D8A98BF15EEF" modified="2008-01-15" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-05-25" version="53" xmlns="http://uniprot.org/uniprot">
    <accession>A9BTF1</accession>
    <name>A9BTF1_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Putative TIS1421-transposase orfA protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_2280</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX34919.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_2280"/>
    <dbReference type="EnsemblBacteria" id="ABX34919">
        <property type="protein sequence ID" value="ABX34919"/>
        <property type="gene ID" value="Daci_2280"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_2280"/>
    <dbReference type="eggNOG" id="COG3293">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_055261_4_2_4"/>
    <dbReference type="OMA" id="LTRGCRW"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025161">
        <property type="entry name" value="Put_IS4/IS5"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13340">
        <property type="entry name" value="DUF4096"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="108"/>
            <end position="141"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="127"/>
            <end position="141"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX34919.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="141" mass="15777" checksum="C187DEFFA8ACA541" modified="2008-01-15" version="1">MLAVLMARRPVSKELWRQLRPLIPAFVPSTKGGARKLAASDEAAINGILFVLQTSIPWEDLPQSLGYRSGITCWRRLRDWNAAGVWEQLHQAMLTRLREHDQIDWSRASIDGSSVPSPRGIRKRAQTPRTEASSAQSGTSM</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="80" xmlns="http://uniprot.org/uniprot">
    <accession>A9BTS7</accession>
    <name>A9BTS7_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Transcriptional regulator, LysR family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Daci_2703</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="4" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the LysR transcriptional regulatory family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX35341.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012204568.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_2703"/>
    <dbReference type="PRIDE" id="A9BTS7"/>
    <dbReference type="EnsemblBacteria" id="ABX35341">
        <property type="protein sequence ID" value="ABX35341"/>
        <property type="gene ID" value="Daci_2703"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_2703"/>
    <dbReference type="eggNOG" id="COG0583">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_039613_6_4_4"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003700">
        <property type="term" value="F:DNA-binding transcription factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005119">
        <property type="entry name" value="LysR_subst-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000847">
        <property type="entry name" value="Tscrpt_reg_HTH_LysR"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036390">
        <property type="entry name" value="WH_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00126">
        <property type="entry name" value="HTH_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03466">
        <property type="entry name" value="LysR_substrate"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00039">
        <property type="entry name" value="HTHLYSR"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46785">
        <property type="entry name" value="SSF46785"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50931">
        <property type="entry name" value="HTH_LYSR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HTH lysR-type" evidence="2">
        <location>
            <begin position="1"/>
            <end position="58"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00009437"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS50931"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ABX35341.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="304" mass="33796" checksum="A78273BADE38216D" modified="2008-01-15" version="1">MELRHLRCFLIVAEELHFARAAERLHIDQSPLSRTIKELEEELGARLFIRTTRSTQLTRAGRQLLEHVPRIFTALDQARDGVKSATNGFLGQLRIALSDGVTPTRLSTLLARCREEDPEVEMRLFEVPLGLQIKGLHEDLYDVGFSMAEDGGDGILVTPAWEDELMVAVPARHPVLAFKQVPLKEVLRYPLALGDPAVCEGHARQIDRFLRKLDQEPLIAQRVATFDVMMTLVSAGLALGLAGEAHIASSREPGVVARRLAGKPYMLTTYLLRRDAEPSEMLARFIERVAFIDSADGIDAADDA</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="53" xmlns="http://uniprot.org/uniprot">
    <accession>A9BTT6</accession>
    <name>A9BTT6_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="6">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ordered locus">Daci_2712</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="7" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX35350.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012204576.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_2712"/>
    <dbReference type="PRIDE" id="A9BTT6"/>
    <dbReference type="EnsemblBacteria" id="ABX35350">
        <property type="protein sequence ID" value="ABX35350"/>
        <property type="gene ID" value="Daci_2712"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_2712"/>
    <dbReference type="eggNOG" id="COG1814">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_038957_3_0_4"/>
    <dbReference type="OMA" id="SRIGWLR"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005384">
        <property type="term" value="F:manganese ion transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030026">
        <property type="term" value="P:cellular manganese ion homeostasis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008217">
        <property type="entry name" value="Ccc1_fam"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR31851">
        <property type="entry name" value="PTHR31851"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01988">
        <property type="entry name" value="VIT1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4 5" id="KW-0472">Membrane</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 5" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="3 5" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="152"/>
            <end position="173"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="179"/>
            <end position="201"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="213"/>
            <end position="234"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="ABX35350.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="235" mass="24334" checksum="F4992234D2C87F0C" modified="2008-01-15" version="1">MTKFHHRAHPESHRTEHIGWLRAAVLGANDGIISTASLVAGVAAAHASHASIMTTAIAGLVAGAMSMAAGEFVSVYSQADTEKADLARERDELENSPEAEHRELTAIYVRRGLDHRLADQVATQLMAHDALGAHARDELGISETLSARPLQAAMASAGSFAVGAAMPLAVVLLAPEQSLLYWIVATAIVFLALLGAAAAAVGGTPLFKSALRVAFWGTFAMAVTAGVGAMFGTAV</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="80" xmlns="http://uniprot.org/uniprot">
    <accession>A9BU32</accession>
    <name>A9BU32_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Transcriptional regulator, TetR family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ordered locus">Daci_3109</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="5" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX35747.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012204948.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_3109"/>
    <dbReference type="PRIDE" id="A9BU32"/>
    <dbReference type="EnsemblBacteria" id="ABX35747">
        <property type="protein sequence ID" value="ABX35747"/>
        <property type="gene ID" value="Daci_3109"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_3109"/>
    <dbReference type="eggNOG" id="COG1309">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_069543_6_0_4"/>
    <dbReference type="OMA" id="TPMSLYH"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009057">
        <property type="entry name" value="Homeobox-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001647">
        <property type="entry name" value="HTH_TetR"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46689">
        <property type="entry name" value="SSF46689"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50977">
        <property type="entry name" value="HTH_TETR_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HTH tetR-type" evidence="3">
        <location>
            <begin position="28"/>
            <end position="88"/>
        </location>
    </feature>
    <feature type="DNA-binding region" description="H-T-H motif" evidence="1">
        <location>
            <begin position="51"/>
            <end position="70"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="1"/>
            <end position="29"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00335"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="PROSITE" id="PS50977"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="ABX35747.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="205" mass="21900" checksum="7485EC2611803A4F" modified="2008-01-15" version="1">MSEQAVPAVRAVSTAQAARRGRPSAGRSLSRDQVLDAGLALLEAVGAQGFGLRPLARQLGITPMSVIHHVGDQQELMRSLVERVHGQPLAEPPPGLAPAQRVQALLAGYMERVRRHPALTVCILGDPALFTDSLAAFTQRLRGEVQQCEPSDGDAAVLLDLLIDYTHGHALALALSGEGAQALHGRFEQGLARLLRQGWERQPGP</sequence>
</entry>
<entry dataset="Swiss-Prot" created="2009-04-14" modified="2022-08-03" version="71" xmlns="http://uniprot.org/uniprot">
    <accession>A9BU40</accession>
    <name>DADA_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">D-amino acid dehydrogenase</fullName>
            <ecNumber evidence="1">1.4.99.-</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="1" type="primary">dadA</name>
        <name type="ordered locus">Daci_3117</name>
    </gene>
    <organism>
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference key="1">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain>DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="1">Oxidative deamination of D-amino acids.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>A + a D-alpha-amino acid + H2O = a 2-oxocarboxylate + AH2 + NH4(+)</text>
            <dbReference type="Rhea" id="RHEA:18125"/>
            <dbReference type="ChEBI" id="CHEBI:13193"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:17499"/>
            <dbReference type="ChEBI" id="CHEBI:28938"/>
            <dbReference type="ChEBI" id="CHEBI:35179"/>
            <dbReference type="ChEBI" id="CHEBI:59871"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>FAD</name>
            <dbReference type="ChEBI" id="CHEBI:57692"/>
        </cofactor>
    </comment>
    <comment type="pathway">
        <text>Amino-acid degradation; D-alanine degradation; NH(3) and pyruvate from D-alanine: step 1/1.</text>
    </comment>
    <comment type="similarity">
        <text evidence="1">Belongs to the DadA oxidoreductase family.</text>
    </comment>
    <dbReference type="EC" id="1.4.99.-" evidence="1"/>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX35755.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012204956.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A9BU40"/>
    <dbReference type="SMR" id="A9BU40"/>
    <dbReference type="STRING" id="398578.Daci_3117"/>
    <dbReference type="PRIDE" id="A9BU40"/>
    <dbReference type="EnsemblBacteria" id="ABX35755">
        <property type="protein sequence ID" value="ABX35755"/>
        <property type="gene ID" value="Daci_3117"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_3117"/>
    <dbReference type="eggNOG" id="COG0665">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_007884_9_2_4"/>
    <dbReference type="OMA" id="NDLYPRG"/>
    <dbReference type="UniPathway" id="UPA00043">
        <property type="reaction ID" value="UER00498"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008718">
        <property type="term" value="F:D-amino-acid dehydrogenase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0055130">
        <property type="term" value="P:D-alanine catabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniPathway"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.50.50.60">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01202">
        <property type="entry name" value="DadA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023080">
        <property type="entry name" value="DadA"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006076">
        <property type="entry name" value="FAD-dep_OxRdtase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036188">
        <property type="entry name" value="FAD/NAD-bd_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01266">
        <property type="entry name" value="DAO"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51905">
        <property type="entry name" value="SSF51905"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword id="KW-0274">FAD</keyword>
    <keyword id="KW-0285">Flavoprotein</keyword>
    <keyword id="KW-0560">Oxidoreductase</keyword>
    <keyword id="KW-1185">Reference proteome</keyword>
    <feature type="chain" id="PRO_1000138647" description="D-amino acid dehydrogenase">
        <location>
            <begin position="1"/>
            <end position="432"/>
        </location>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <begin position="3"/>
            <end position="17"/>
        </location>
        <ligand>
            <name>FAD</name>
            <dbReference type="ChEBI" id="CHEBI:57692"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000255" key="1">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01202"/>
        </source>
    </evidence>
    <sequence length="432" mass="46915" checksum="D8BA3622F8E93A7C" modified="2008-01-15" version="1">MKVLVLGGGVIGVTSAYYLARAGAEVTVLDRQDAPASETSFANAGQVSPGYSTPWAAPGIPLKALKWMLQEHAPLAVRLDGSLFQLRWMAQMLRNCSAQRYAVNKERMMRVAEYSRSCLQQLRADTGIAYEQRTGGTLQLFRTQAQLDAVERDVAVLRECAVPFELLDRDQLAQVEPALAQARDRLTGGLRLPKDETGDCHRFTNELARIATGLGVELRFNQNVDGLVVEGGRIAGVRVNGELLTADRYVMAFGSYSRQALEPLGLDLPVYPVKGYSLTVPLGNPALAPQSTVLDETYKIAVTRFDDRIRVGGMAELGGFDLRLDPRRRATLELVVNDLFPGGDVARASFWTGLRPMTPDGTPIIGATRYANLFLNTGHGTLGWTMACGSGRLIADLITGRSPEISTDGLALDRYTHRPARHLGGSSTPVSA</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="46" xmlns="http://uniprot.org/uniprot">
    <accession>A9BU42</accession>
    <name>A9BU42_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Conserved repeat domain protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ordered locus">Daci_3119</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="6" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX35757.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012204958.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_3119"/>
    <dbReference type="PRIDE" id="A9BU42"/>
    <dbReference type="EnsemblBacteria" id="ABX35757">
        <property type="protein sequence ID" value="ABX35757"/>
        <property type="gene ID" value="Daci_3119"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_3119"/>
    <dbReference type="eggNOG" id="COG2885">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_672174_0_0_4"/>
    <dbReference type="OMA" id="NNAMCAS"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.40.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001434">
        <property type="entry name" value="DUF11"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013783">
        <property type="entry name" value="Ig-like_fold"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR026442">
        <property type="entry name" value="IPTL_CTERM"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01345">
        <property type="entry name" value="DUF11"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF18203">
        <property type="entry name" value="IPTL-CTERM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01451">
        <property type="entry name" value="B_ant_repeat"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR04174">
        <property type="entry name" value="IPTL_CTERM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0732">Signal</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="signal peptide" evidence="2">
        <location>
            <begin position="1"/>
            <end position="24"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5002732512" evidence="2">
        <location>
            <begin position="25"/>
            <end position="409"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="382"/>
            <end position="399"/>
        </location>
    </feature>
    <feature type="domain" description="DUF11" evidence="3">
        <location>
            <begin position="230"/>
            <end position="339"/>
        </location>
    </feature>
    <feature type="domain" description="IPTL-CTERM" evidence="4">
        <location>
            <begin position="374"/>
            <end position="402"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF01345"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="Pfam" id="PF18203"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="ABX35757.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="409" mass="42715" checksum="23C56454473ECABC" modified="2008-01-15" version="1">MKNHALMAALMAGAALSACPPASAQVTRYYGEMRTAYSDFQDRTACPLGSHGSCQDFPRTARLAGWFETAAPLQPNLDESEIRALVTSYSFSDGLNTYSSSDPDVRAFIFRVSTDSGSNIVKNRIHLQRWLTGSNPHRSINEMGPGGSPNDVDMLSRFEMATEQVGAMNNAMCASLFSETSLQVSYSGESDTCLGTYEVPDNGVSVAWTGAPVQNQNVMSWHREAVHPALSLTHSISPAGQVQAGQEVRYTITVRNTGTVAATQAQIADSLPAGLERATWICTPGTSTPCPVASGSGSLAVTVPVFAAGDSLVFTVMASVANPAPATITNVATVNAGDPSVQCMQAGQVVGTVPCMASASINTLAAFPGGGQVTPVPTLQHTALVVLSLLAAAIGWMGLGRRQRVGAGR</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-05-25" version="78" xmlns="http://uniprot.org/uniprot">
    <accession>A9BU48</accession>
    <name>A9BU48_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Transcriptional regulator, LacI family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ordered locus">Daci_3125</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="6" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX35763.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_3125"/>
    <dbReference type="EnsemblBacteria" id="ABX35763">
        <property type="protein sequence ID" value="ABX35763"/>
        <property type="gene ID" value="Daci_3125"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_3125"/>
    <dbReference type="eggNOG" id="COG1609">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_037628_6_0_4"/>
    <dbReference type="OMA" id="HERVERY"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006355">
        <property type="term" value="P:regulation of transcription, DNA-templated"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd01392">
        <property type="entry name" value="HTH_LacI"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.260.40">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000843">
        <property type="entry name" value="HTH_LacI"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR046335">
        <property type="entry name" value="LacI/GalR-like_sensor"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010982">
        <property type="entry name" value="Lambda_DNA-bd_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR028082">
        <property type="entry name" value="Peripla_BP_I"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13377">
        <property type="entry name" value="Peripla_BP_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00354">
        <property type="entry name" value="HTH_LACI"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53822">
        <property type="entry name" value="SSF53822"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50932">
        <property type="entry name" value="HTH_LACI_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0804">Transcription</keyword>
    <keyword evidence="1" id="KW-0805">Transcription regulation</keyword>
    <feature type="domain" description="HTH lacI-type" evidence="4">
        <location>
            <begin position="1"/>
            <end position="30"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023015"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023163"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="PROSITE" id="PS50932"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="ABX35763.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="304" mass="31732" checksum="D57A70B67AF6555C" modified="2008-01-15" version="1">MVNAQTRSTVLRVAQEVGYVANASARTLRTRSSKVLGVVLPTLTNPVFAECLQGIASQAALRGYAISPCTTEYDHAGEDAATTRLLASGVDALVLVVSNPGDSAALARVRQAGKPYVLAYHHTHEHACVGVDNTGAVRELVLRLAAAGHSRIGMVTGQLQASDRAQQRCRGYALGMQAAGLSPLPVWEVPFAATAVQMLQHHLAEQAPPTAIVCSNDLLAIRTIRAASLAGFSVPADISVVGFDGIAMAGDLTPSLASISQPNHDIGSACVRLLCDALAGKKTLAAQESLCLPHGWRSGESCRL</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="81" xmlns="http://uniprot.org/uniprot">
    <accession>A9BUE1</accession>
    <name>A9BUE1_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="6">Glucose-methanol-choline oxidoreductase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ordered locus">Daci_1199</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="7" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="2">
            <name>FAD</name>
            <dbReference type="ChEBI" id="CHEBI:57692"/>
        </cofactor>
    </comment>
    <comment type="similarity">
        <text evidence="1 3">Belongs to the GMC oxidoreductase family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX33844.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012203130.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_1199"/>
    <dbReference type="PRIDE" id="A9BUE1"/>
    <dbReference type="EnsemblBacteria" id="ABX33844">
        <property type="protein sequence ID" value="ABX33844"/>
        <property type="gene ID" value="Daci_1199"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_1199"/>
    <dbReference type="eggNOG" id="COG2303">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_002865_7_2_4"/>
    <dbReference type="OMA" id="HPFFAPS"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0050660">
        <property type="term" value="F:flavin adenine dinucleotide binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016614">
        <property type="term" value="F:oxidoreductase activity, acting on CH-OH group of donors"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.50.50.60">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036188">
        <property type="entry name" value="FAD/NAD-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012132">
        <property type="entry name" value="GMC_OxRdtase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000172">
        <property type="entry name" value="GMC_OxRdtase_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007867">
        <property type="entry name" value="GMC_OxRtase_C"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11552">
        <property type="entry name" value="PTHR11552"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF05199">
        <property type="entry name" value="GMC_oxred_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00732">
        <property type="entry name" value="GMC_oxred_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF000137">
        <property type="entry name" value="Alcohol_oxidase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51905">
        <property type="entry name" value="SSF51905"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00623">
        <property type="entry name" value="GMC_OXRED_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00624">
        <property type="entry name" value="GMC_OXRED_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2 3" id="KW-0274">FAD</keyword>
    <keyword evidence="3" id="KW-0285">Flavoprotein</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="GMC_OxRdtase_N" evidence="4">
        <location>
            <begin position="79"/>
            <end position="102"/>
        </location>
    </feature>
    <feature type="domain" description="GMC_OxRdtase_N" evidence="5">
        <location>
            <begin position="251"/>
            <end position="265"/>
        </location>
    </feature>
    <feature type="binding site" evidence="2">
        <location>
            <position position="81"/>
        </location>
        <ligand>
            <name>FAD</name>
            <dbReference type="ChEBI" id="CHEBI:57692"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="2">
        <location>
            <begin position="89"/>
            <end position="92"/>
        </location>
        <ligand>
            <name>FAD</name>
            <dbReference type="ChEBI" id="CHEBI:57692"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="2">
        <location>
            <position position="216"/>
        </location>
        <ligand>
            <name>FAD</name>
            <dbReference type="ChEBI" id="CHEBI:57692"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00010790"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="PIRSR" id="PIRSR000137-2"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="RuleBase" id="RU003968"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="PROSITE" id="PS00623"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="PROSITE" id="PS00624"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="ABX33844.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="530" mass="56049" checksum="52D91ECB3FACBF40" modified="2008-01-15" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="54" xmlns="http://uniprot.org/uniprot">
    <accession>A9BUJ4</accession>
    <name>A9BUJ4_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">STAS domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Daci_1458</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="4" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX34102.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012203388.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_1458"/>
    <dbReference type="PRIDE" id="A9BUJ4"/>
    <dbReference type="EnsemblBacteria" id="ABX34102">
        <property type="protein sequence ID" value="ABX34102"/>
        <property type="gene ID" value="Daci_1458"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_1458"/>
    <dbReference type="eggNOG" id="COG1366">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_486544_0_0_4"/>
    <dbReference type="OMA" id="RSAPQWF"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002645">
        <property type="entry name" value="STAS_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13466">
        <property type="entry name" value="STAS_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="STAS" evidence="2">
        <location>
            <begin position="516"/>
            <end position="582"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="74"/>
            <end position="93"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF13466"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ABX34102.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="593" mass="63887" checksum="2A027974101C7357" modified="2008-01-15" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-05-25" version="77" xmlns="http://uniprot.org/uniprot">
    <accession>A9BUT0</accession>
    <name>A9BUT0_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Transcriptional regulator, LysR family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Daci_1544</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="4" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the LysR transcriptional regulatory family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX34188.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012203474.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_1544"/>
    <dbReference type="EnsemblBacteria" id="ABX34188">
        <property type="protein sequence ID" value="ABX34188"/>
        <property type="gene ID" value="Daci_1544"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_1544"/>
    <dbReference type="eggNOG" id="COG0583">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_039613_39_0_4"/>
    <dbReference type="OMA" id="CARPHVM"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003700">
        <property type="term" value="F:DNA-binding transcription factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005119">
        <property type="entry name" value="LysR_subst-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000847">
        <property type="entry name" value="Tscrpt_reg_HTH_LysR"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036390">
        <property type="entry name" value="WH_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00126">
        <property type="entry name" value="HTH_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03466">
        <property type="entry name" value="LysR_substrate"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00039">
        <property type="entry name" value="HTHLYSR"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46785">
        <property type="entry name" value="SSF46785"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50931">
        <property type="entry name" value="HTH_LYSR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HTH lysR-type" evidence="2">
        <location>
            <begin position="6"/>
            <end position="63"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00009437"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS50931"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ABX34188.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="309" mass="34439" checksum="CABCE43A131C8969" modified="2008-01-15" version="1">MDIKNLDLNLLRVFDAVYRHCSVSRAAEELGMSQPAASQAVTRLRLLLGNPLFERAHAGVRPTPRAERLALAVRQALEVLEVAMSEAQSFEPLQARQRFRIHLSDIGEARFLPPLMQALHQRAPHVQLETLPMPLDGIADALDRGTLDIAIGFLPGGTRTRQTVLLSDHYGVLLRSGHPALAHLPEGAPLALATLRQLDFAAVRSHSETLRILQALRLDERIRLSAAHFMAVPSIVGKTDLAVIMPAEIAAGFVERGGYAVRDADLPDHHFDVSLHWSWRFEQEPAKRWLRELVCELFQQPRHREAAAP</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="75" xmlns="http://uniprot.org/uniprot">
    <accession>A9BV24</accession>
    <name>A9BV24_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="5">Iron-sulfur cluster carrier protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="7" type="ordered locus">Daci_1846</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="8" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="5">Binds and transfers iron-sulfur (Fe-S) clusters to target apoproteins. Can hydrolyze ATP.</text>
    </comment>
    <comment type="subunit">
        <text evidence="5">Homodimer.</text>
    </comment>
    <comment type="similarity">
        <text evidence="5">Belongs to the Mrp/NBP35 ATP-binding proteins family.</text>
    </comment>
    <comment type="similarity">
        <text evidence="2">In the C-terminal section; belongs to the Mrp/NBP35 ATP-binding proteins family.</text>
    </comment>
    <comment type="similarity">
        <text evidence="1">In the N-terminal section; belongs to the MIP18 family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX34486.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012203771.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_1846"/>
    <dbReference type="PRIDE" id="A9BV24"/>
    <dbReference type="EnsemblBacteria" id="ABX34486">
        <property type="protein sequence ID" value="ABX34486"/>
        <property type="gene ID" value="Daci_1846"/>
    </dbReference>
    <dbReference type="GeneID" id="60686274"/>
    <dbReference type="KEGG" id="dac:Daci_1846"/>
    <dbReference type="eggNOG" id="COG0489">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_024839_0_0_4"/>
    <dbReference type="OMA" id="QHITFKD"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016887">
        <property type="term" value="F:ATP hydrolysis activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0140663">
        <property type="term" value="F:ATP-dependent FeS chaperone activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051536">
        <property type="term" value="F:iron-sulfur cluster binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016226">
        <property type="term" value="P:iron-sulfur cluster assembly"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.300.130">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_02040">
        <property type="entry name" value="Mrp_NBP35"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR034904">
        <property type="entry name" value="FSCA_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002744">
        <property type="entry name" value="MIP18-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019591">
        <property type="entry name" value="Mrp/NBP35_ATP-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000808">
        <property type="entry name" value="Mrp_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR044304">
        <property type="entry name" value="NUBPL-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR033756">
        <property type="entry name" value="YlxH/NBP35"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR42961">
        <property type="entry name" value="PTHR42961"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01883">
        <property type="entry name" value="FeS_assembly_P"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF10609">
        <property type="entry name" value="ParA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF117916">
        <property type="entry name" value="SSF117916"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01215">
        <property type="entry name" value="MRP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4 5" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="5" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="5" id="KW-0408">Iron</keyword>
    <keyword evidence="5" id="KW-0411">Iron-sulfur</keyword>
    <keyword evidence="5" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="3 5" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="FeS_assembly_P" evidence="6">
        <location>
            <begin position="5"/>
            <end position="76"/>
        </location>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <begin position="106"/>
            <end position="113"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00007352"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00008205"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_02040"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="Pfam" id="PF01883"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="ABX34486.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="363" mass="38202" checksum="CE70199D37F9373C" modified="2008-01-15" version="1">MAVTEQALLAALSSVLDPHTGKDYVSTRALRNLQVTGADVAFDVEMGYPAQSLVPALRGQFVAAAKTVEGVGNVSVNITSKVAAHAVQRGVQLLPGVKNIIAISSGKGGVGKSTTTANLALALAAEGARVGILDADIYGPSQPMMMGISGRPESPDGKTMEPMESHGVQVMSIGFLVNNDQAMIWRGPMATQALEQMLRQTNWKDLDYLLVDMPPGTGDIQLTLAQRVPMTGAVVVTTPQDIALIDAKKGVKMFEKVGVPILGLVENMAAHVCTNCGHVEHIFGAEGGKQMAAEYGIDYLGALPLSLQIRLQADSGKPTVVAEPDSEAAQIYKKVARDLAVKVALKARDFTSKFPTITVSQGT</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2021-09-29" version="50" xmlns="http://uniprot.org/uniprot">
    <accession>A9BV51</accession>
    <name>A9BV51_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Flp/Fap pilin component</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_2075</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX34715.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012203998.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_2075"/>
    <dbReference type="EnsemblBacteria" id="ABX34715">
        <property type="protein sequence ID" value="ABX34715"/>
        <property type="gene ID" value="Daci_2075"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_2075"/>
    <dbReference type="eggNOG" id="COG3847">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_171854_5_2_4"/>
    <dbReference type="OMA" id="AIKGSAC"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007047">
        <property type="entry name" value="Flp_Fap"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04964">
        <property type="entry name" value="Flp_Fap"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="20"/>
            <end position="39"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX34715.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="58" mass="6064" checksum="966B09631F0E4679" modified="2008-01-15" version="1">MTEMIKNFWKDEEGATAIEYGLIAGLIAVGIVVGATALGTDLNGLFNRLATKLNGLAP</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2021-06-02" version="59" xmlns="http://uniprot.org/uniprot">
    <accession>A9BV94</accession>
    <name>A9BV94_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Hydroxypyruvate isomerase</fullName>
            <ecNumber evidence="4">5.3.1.22</ecNumber>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ordered locus">Daci_2118</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="5" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the hyi family.</text>
    </comment>
    <dbReference type="EC" id="5.3.1.22" evidence="4"/>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX34758.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012204041.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_2118"/>
    <dbReference type="EnsemblBacteria" id="ABX34758">
        <property type="protein sequence ID" value="ABX34758"/>
        <property type="gene ID" value="Daci_2118"/>
    </dbReference>
    <dbReference type="GeneID" id="60686516"/>
    <dbReference type="KEGG" id="dac:Daci_2118"/>
    <dbReference type="eggNOG" id="COG3622">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_050006_1_2_4"/>
    <dbReference type="OMA" id="YVQYDIY"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008903">
        <property type="term" value="F:hydroxypyruvate isomerase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017643">
        <property type="entry name" value="Hydroxypyruvate_isomerase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR026040">
        <property type="entry name" value="HyI-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036237">
        <property type="entry name" value="Xyl_isomerase-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013022">
        <property type="entry name" value="Xyl_isomerase-like_TIM-brl"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01261">
        <property type="entry name" value="AP_endonuc_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF006241">
        <property type="entry name" value="HyI"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51658">
        <property type="entry name" value="SSF51658"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR03234">
        <property type="entry name" value="OH-pyruv-isom"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="1 4" id="KW-0413">Isomerase</keyword>
    <keyword evidence="4" id="KW-0670">Pyruvate</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="AP_endonuc_2" evidence="3">
        <location>
            <begin position="21"/>
            <end position="256"/>
        </location>
    </feature>
    <feature type="active site" description="Proton donor/acceptor" evidence="2">
        <location>
            <position position="143"/>
        </location>
    </feature>
    <feature type="active site" description="Proton donor/acceptor" evidence="2">
        <location>
            <position position="240"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="PIRNR" id="PIRNR006241"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="PIRSR" id="PIRSR006241-50"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF01261"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="ABX34758.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="266" mass="29118" checksum="B4333258D38B670C" modified="2008-01-15" version="1">MPRFAANLSMLFTEVPFLDRFERAARAGFEAVEFLFPYAHTVEEIKERVDAHGLQIVLHNLPAGDWDAGERGIACHPDRVDEFRAGVAKAVTYGHALGVPQLNCLAGKAPAGADAALLRRTFVDNLRFAASALSAANLRLLIEPINPFDIPGFYLNRTDEALSILDEVGAPNAFVQYDIYHAQRTEGELAATLQKHLARIGHVQLADNPGRNEPGTGEINYPFLFAHLDRIGYQGWVGCEYKPARDTESGLGWLDAHTSVRAAVAA</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="62" xmlns="http://uniprot.org/uniprot">
    <accession>A9BVF0</accession>
    <name>A9BVF0_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Diguanylate cyclase/phosphodiesterase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ordered locus">Daci_2379</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="5" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX35017.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012204299.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_2379"/>
    <dbReference type="PRIDE" id="A9BVF0"/>
    <dbReference type="EnsemblBacteria" id="ABX35017">
        <property type="protein sequence ID" value="ABX35017"/>
        <property type="gene ID" value="Daci_2379"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_2379"/>
    <dbReference type="eggNOG" id="COG5001">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_000445_70_50_4"/>
    <dbReference type="OMA" id="RFCCAFQ"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd01948">
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        <property type="match status" value="1"/>
    </dbReference>
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        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.20.20.450">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.70.270">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001633">
        <property type="entry name" value="EAL_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035919">
        <property type="entry name" value="EAL_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000160">
        <property type="entry name" value="GGDEF_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029787">
        <property type="entry name" value="Nucleotide_cyclase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043128">
        <property type="entry name" value="Rev_trsase/Diguanyl_cyclase"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00563">
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        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00990">
        <property type="entry name" value="GGDEF"/>
        <property type="match status" value="1"/>
    </dbReference>
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        <property type="entry name" value="EAL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00267">
        <property type="entry name" value="GGDEF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF141868">
        <property type="entry name" value="SSF141868"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55073">
        <property type="entry name" value="SSF55073"/>
        <property type="match status" value="1"/>
    </dbReference>
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        <property type="entry name" value="GGDEF"/>
        <property type="match status" value="1"/>
    </dbReference>
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        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50887">
        <property type="entry name" value="GGDEF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="73"/>
            <end position="93"/>
        </location>
    </feature>
    <feature type="domain" description="GGDEF" evidence="3">
        <location>
            <begin position="162"/>
            <end position="294"/>
        </location>
    </feature>
    <feature type="domain" description="EAL" evidence="2">
        <location>
            <begin position="303"/>
            <end position="556"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS50883"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="PROSITE" id="PS50887"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="ABX35017.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="573" mass="63227" checksum="2911E528C7B909C1" modified="2008-01-15" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="46" xmlns="http://uniprot.org/uniprot">
    <accession>A9BVR4</accession>
    <name>A9BVR4_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_2789</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX35427.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012204637.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_2789"/>
    <dbReference type="PRIDE" id="A9BVR4"/>
    <dbReference type="EnsemblBacteria" id="ABX35427">
        <property type="protein sequence ID" value="ABX35427"/>
        <property type="gene ID" value="Daci_2789"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_2789"/>
    <dbReference type="eggNOG" id="ENOG5032YFT">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_193891_0_0_4"/>
    <dbReference type="OMA" id="MPRMDER"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="coiled-coil region" evidence="1">
        <location>
            <begin position="7"/>
            <end position="62"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX35427.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="69" mass="7790" checksum="F081EE410F04F88E" modified="2008-01-15" version="1">MTSQTSLDHIAERVERLLVRHEELQRTNALLAEQVAALTQERDSLRSRLNAARARVDALIERLPSNQGA</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="64" xmlns="http://uniprot.org/uniprot">
    <accession>A9BVU3</accession>
    <name>A9BVU3_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="3">GCN5-related N-acetyltransferase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Daci_2818</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="4" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX35456.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012204666.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_2818"/>
    <dbReference type="PRIDE" id="A9BVU3"/>
    <dbReference type="EnsemblBacteria" id="ABX35456">
        <property type="protein sequence ID" value="ABX35456"/>
        <property type="gene ID" value="Daci_2818"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_2818"/>
    <dbReference type="eggNOG" id="COG1670">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_013985_1_2_4"/>
    <dbReference type="OMA" id="FGAPMQR"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008080">
        <property type="term" value="F:N-acetyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016181">
        <property type="entry name" value="Acyl_CoA_acyltransferase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000182">
        <property type="entry name" value="GNAT_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13302">
        <property type="entry name" value="Acetyltransf_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55729">
        <property type="entry name" value="SSF55729"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51186">
        <property type="entry name" value="GNAT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="N-acetyltransferase" evidence="2">
        <location>
            <begin position="35"/>
            <end position="193"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="31"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS51186"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ABX35456.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="248" mass="27229" checksum="5CAD6499B0C480EA" modified="2008-01-15" version="1">MPPALNAHSQPVGHDLPGWTPRQRPPRTPMQGRYCRLEPLSAARHAADLFDAFSQAPDASDWTYMSVGPFADAQAYLRFAEAAQASDDPLHHAVIDLATGRAIGSLALMRVDTASGVMEVGFVCYSRQLKRTRAATEAQFLLMQRAFDELGYRRYEWKCDSLNAPSRAAAARLGFQFEGVFRQAVVYKGRSRDTAWFSIVDSEWPALRAAYQRWLEPGNFDAGGGQVLSLSSLVEQGASQAQETAGAA</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="68" xmlns="http://uniprot.org/uniprot">
    <accession>A9BW22</accession>
    <name>A9BW22_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Pathogenesis-related transcriptional factor and ERF protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ordered locus">Daci_3200</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="6" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX35838.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_3200"/>
    <dbReference type="PRIDE" id="A9BW22"/>
    <dbReference type="EnsemblBacteria" id="ABX35838">
        <property type="protein sequence ID" value="ABX35838"/>
        <property type="gene ID" value="Daci_3200"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_3200"/>
    <dbReference type="eggNOG" id="ENOG50330U8">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_095318_1_1_4"/>
    <dbReference type="OMA" id="RECLDYD"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003700">
        <property type="term" value="F:DNA-binding transcription factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.730.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001471">
        <property type="entry name" value="AP2/ERF_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036955">
        <property type="entry name" value="AP2/ERF_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016177">
        <property type="entry name" value="DNA-bd_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR044925">
        <property type="entry name" value="His-Me_finger_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003615">
        <property type="entry name" value="HNH_nuc"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13392">
        <property type="entry name" value="HNH_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00380">
        <property type="entry name" value="AP2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54060">
        <property type="entry name" value="SSF54060"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54171">
        <property type="entry name" value="SSF54171"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51032">
        <property type="entry name" value="AP2_ERF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0804">Transcription</keyword>
    <keyword evidence="1" id="KW-0805">Transcription regulation</keyword>
    <feature type="domain" description="AP2/ERF" evidence="4">
        <location>
            <begin position="109"/>
            <end position="164"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023015"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023163"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="PROSITE" id="PS51032"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="ABX35838.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="174" mass="20081" checksum="C34F010B23CCF99C" modified="2008-01-15" version="1">MNEEIERLRTALDYDPETGLLRWTKSMVGKKRRGDIAGSREKAGYRKLICFGKTYFVHRVAWMLHYGEPPPKIIDHINGVRDDNRIANLRGCTDSQNNMNRRPRRSGYGLKGVTNLPDGRFMAHVTKEGRSYYGGYFHTREAAARAYDFLAITHFGEFARLNFPDQRPTGHKES</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="39" xmlns="http://uniprot.org/uniprot">
    <accession>A9BW33</accession>
    <name>A9BW33_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Daci_3211</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="2" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX35849.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012205049.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_3211"/>
    <dbReference type="PRIDE" id="A9BW33"/>
    <dbReference type="EnsemblBacteria" id="ABX35849">
        <property type="protein sequence ID" value="ABX35849"/>
        <property type="gene ID" value="Daci_3211"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_3211"/>
    <dbReference type="eggNOG" id="ENOG5033ZIH">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_1913491_0_0_4"/>
    <dbReference type="OMA" id="KPCGLES"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ABX35849.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="132" mass="14402" checksum="A913C7D63AD9A59E" modified="2008-01-15" version="1">MGLSFVNIHGQQISELQLGAMKAEGLEIERKRRAANKADQVSVHKGWRVTGVAPGLLDDARAARERLQAMARKAGGKPIEDFDQVAWQRNAKRSAVRSKPCGLESAAKQCAELASKAGWLDVQIQEIKKVVA</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-01-19" version="46" xmlns="http://uniprot.org/uniprot">
    <accession>A9BWF8</accession>
    <name>A9BWF8_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Phage transcriptional regulator, AlpA</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Daci_3544</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="2" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX36178.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012205378.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="ABX36178">
        <property type="protein sequence ID" value="ABX36178"/>
        <property type="gene ID" value="Daci_3544"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_3544"/>
    <dbReference type="eggNOG" id="COG3311">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_140176_3_0_4"/>
    <dbReference type="OMA" id="LPPPNCG"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010260">
        <property type="entry name" value="AlpA"/>
    </dbReference>
    <dbReference type="Pfam" id="PF05930">
        <property type="entry name" value="Phage_AlpA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ABX36178.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="81" mass="9049" checksum="023AFEBC3F69F9AF" modified="2008-01-15" version="1">MSKSITLNFAPAVLGREHAAAYVALSVSSFEQLVRERQIPQPRQLSARRVGWLRAELDDWSARRPASELLPPENTGAPKPR</sequence>
</entry>
<entry dataset="Swiss-Prot" created="2009-03-24" modified="2022-08-03" version="83" xmlns="http://uniprot.org/uniprot">
    <accession>A9BWI1</accession>
    <name>KAD_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Adenylate kinase</fullName>
            <shortName evidence="1">AK</shortName>
            <ecNumber evidence="1">2.7.4.3</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="1">ATP-AMP transphosphorylase</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="1">ATP:AMP phosphotransferase</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="1">Adenylate monophosphate kinase</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="1" type="primary">adk</name>
        <name type="ordered locus">Daci_3567</name>
    </gene>
    <organism>
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference key="1">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain>DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="1">Catalyzes the reversible transfer of the terminal phosphate group between ATP and AMP. Plays an important role in cellular energy homeostasis and in adenine nucleotide metabolism.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>AMP + ATP = 2 ADP</text>
            <dbReference type="Rhea" id="RHEA:12973"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:456215"/>
            <dbReference type="ChEBI" id="CHEBI:456216"/>
            <dbReference type="EC" id="2.7.4.3"/>
        </reaction>
    </comment>
    <comment type="pathway">
        <text evidence="1">Purine metabolism; AMP biosynthesis via salvage pathway; AMP from ADP: step 1/1.</text>
    </comment>
    <comment type="subunit">
        <text evidence="1">Monomer.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="domain">
        <text evidence="1">Consists of three domains, a large central CORE domain and two small peripheral domains, NMPbind and LID, which undergo movements during catalysis. The LID domain closes over the site of phosphoryl transfer upon ATP binding. Assembling and dissambling the active center during each catalytic cycle provides an effective means to prevent ATP hydrolysis.</text>
    </comment>
    <comment type="similarity">
        <text evidence="1">Belongs to the adenylate kinase family.</text>
    </comment>
    <dbReference type="EC" id="2.7.4.3" evidence="1"/>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX36201.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012205401.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A9BWI1"/>
    <dbReference type="SMR" id="A9BWI1"/>
    <dbReference type="STRING" id="398578.Daci_3567"/>
    <dbReference type="PRIDE" id="A9BWI1"/>
    <dbReference type="EnsemblBacteria" id="ABX36201">
        <property type="protein sequence ID" value="ABX36201"/>
        <property type="gene ID" value="Daci_3567"/>
    </dbReference>
    <dbReference type="GeneID" id="60687776"/>
    <dbReference type="KEGG" id="dac:Daci_3567"/>
    <dbReference type="eggNOG" id="COG0563">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_032354_1_2_4"/>
    <dbReference type="OMA" id="FHNRMRV"/>
    <dbReference type="UniPathway" id="UPA00588">
        <property type="reaction ID" value="UER00649"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004017">
        <property type="term" value="F:adenylate kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0044209">
        <property type="term" value="P:AMP salvage"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniPathway"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016310">
        <property type="term" value="P:phosphorylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd01428">
        <property type="entry name" value="ADK"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00235">
        <property type="entry name" value="Adenylate_kinase_Adk"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006259">
        <property type="entry name" value="Adenyl_kin_sub"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000850">
        <property type="entry name" value="Adenylat/UMP-CMP_kin"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR033690">
        <property type="entry name" value="Adenylat_kinase_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007862">
        <property type="entry name" value="Adenylate_kinase_lid-dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR23359">
        <property type="entry name" value="PTHR23359"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF05191">
        <property type="entry name" value="ADK_lid"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00094">
        <property type="entry name" value="ADENYLTKNASE"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01351">
        <property type="entry name" value="adk"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00113">
        <property type="entry name" value="ADENYLATE_KINASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword id="KW-0067">ATP-binding</keyword>
    <keyword id="KW-0963">Cytoplasm</keyword>
    <keyword id="KW-0418">Kinase</keyword>
    <keyword id="KW-0545">Nucleotide biosynthesis</keyword>
    <keyword id="KW-0547">Nucleotide-binding</keyword>
    <keyword id="KW-1185">Reference proteome</keyword>
    <keyword id="KW-0808">Transferase</keyword>
    <feature type="chain" id="PRO_1000100556" description="Adenylate kinase">
        <location>
            <begin position="1"/>
            <end position="218"/>
        </location>
    </feature>
    <feature type="region of interest" description="NMP" evidence="1">
        <location>
            <begin position="30"/>
            <end position="59"/>
        </location>
    </feature>
    <feature type="region of interest" description="LID" evidence="1">
        <location>
            <begin position="122"/>
            <end position="159"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="127"/>
            <end position="151"/>
        </location>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <begin position="10"/>
            <end position="15"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <position position="31"/>
        </location>
        <ligand>
            <name>AMP</name>
            <dbReference type="ChEBI" id="CHEBI:456215"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <position position="36"/>
        </location>
        <ligand>
            <name>AMP</name>
            <dbReference type="ChEBI" id="CHEBI:456215"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <begin position="57"/>
            <end position="59"/>
        </location>
        <ligand>
            <name>AMP</name>
            <dbReference type="ChEBI" id="CHEBI:456215"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <begin position="85"/>
            <end position="88"/>
        </location>
        <ligand>
            <name>AMP</name>
            <dbReference type="ChEBI" id="CHEBI:456215"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <position position="92"/>
        </location>
        <ligand>
            <name>AMP</name>
            <dbReference type="ChEBI" id="CHEBI:456215"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <position position="123"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <begin position="132"/>
            <end position="133"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <position position="156"/>
        </location>
        <ligand>
            <name>AMP</name>
            <dbReference type="ChEBI" id="CHEBI:456215"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <position position="167"/>
        </location>
        <ligand>
            <name>AMP</name>
            <dbReference type="ChEBI" id="CHEBI:456215"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <position position="203"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000255" key="1">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00235"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <sequence length="218" mass="23605" checksum="2C01099940BCA3C6" modified="2008-01-15" version="1">MKLILLGAPGAGKGTQAAFICQKYGIPQISTGDMLRAAVKAGTPLGQQAKAVMDAGQLVSDDLIINLVKERIAQADCANGFLFDGFPRTIPQADAMKAAGVKLDYVLEIDVPFDAIIERMSGRRSHPASGRTYHVKFNPPKVEGQDDVTGEPLVQREDDKEETVKKRLDVYSSQTRPLVDYYRAWAEKEAAAAPKYRAISGLGSVEDITQRALAALAE</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="77" xmlns="http://uniprot.org/uniprot">
    <accession>A9BWM0</accession>
    <name>A9BWM0_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Transcriptional regulator, LysR family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Daci_3916</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="4" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the LysR transcriptional regulatory family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX36547.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012205741.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_3916"/>
    <dbReference type="PRIDE" id="A9BWM0"/>
    <dbReference type="EnsemblBacteria" id="ABX36547">
        <property type="protein sequence ID" value="ABX36547"/>
        <property type="gene ID" value="Daci_3916"/>
    </dbReference>
    <dbReference type="GeneID" id="60688199"/>
    <dbReference type="KEGG" id="dac:Daci_3916"/>
    <dbReference type="eggNOG" id="COG0583">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_039613_1_4_4"/>
    <dbReference type="OMA" id="PLPISIW"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003700">
        <property type="term" value="F:DNA-binding transcription factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005119">
        <property type="entry name" value="LysR_subst-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000847">
        <property type="entry name" value="Tscrpt_reg_HTH_LysR"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036390">
        <property type="entry name" value="WH_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00126">
        <property type="entry name" value="HTH_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03466">
        <property type="entry name" value="LysR_substrate"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00039">
        <property type="entry name" value="HTHLYSR"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46785">
        <property type="entry name" value="SSF46785"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50931">
        <property type="entry name" value="HTH_LYSR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HTH lysR-type" evidence="2">
        <location>
            <begin position="10"/>
            <end position="67"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00009437"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS50931"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ABX36547.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="300" mass="32114" checksum="AB92DEE799A19F4A" modified="2008-01-15" version="1">MERAVNHPDLQIDWLRALVAVVDAGSLSAAAPLLHRSQAAVSMQIKKLETALGQPVLLRGPRHLQLTPAGAELLGYARRMLELQAQAQAALFGPDLSGRVRLGVPDDYASTYLTPVLRSFAGRYQGVEIELTCEQSTALIPQVVRGTLDLALVSRDRPQRGRLLFHEPLVWVGAPQHEVWRKNPLPIAVYEAASLARTAALSSLAAQRRAHRVVYHSSSLAGQLAAVESGLAVAVFTRCSVPPHLQVLQNLPAGFELPPLVSMEVSALRSKASQGSAAVDAMYGQLIATLGQAQSKSGVA</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="91" xmlns="http://uniprot.org/uniprot">
    <accession>A9BWQ6</accession>
    <name>A9BWQ6_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="4">Peptide methionine sulfoxide reductase MsrA</fullName>
            <shortName evidence="4">Protein-methionine-S-oxide reductase</shortName>
            <ecNumber evidence="4">1.8.4.11</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="4">Peptide-methionine (S)-S-oxide reductase</fullName>
            <shortName evidence="4">Peptide Met(O) reductase</shortName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="4" type="primary">msrA</name>
        <name evidence="6" type="ordered locus">Daci_3952</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="7" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="4">Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1 4">
            <text>[thioredoxin]-disulfide + H2O + L-methionine = [thioredoxin]-dithiol + L-methionine (S)-S-oxide</text>
            <dbReference type="Rhea" id="RHEA:19993"/>
            <dbReference type="Rhea" id="RHEA-COMP:10698"/>
            <dbReference type="Rhea" id="RHEA-COMP:10700"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:29950"/>
            <dbReference type="ChEBI" id="CHEBI:50058"/>
            <dbReference type="ChEBI" id="CHEBI:57844"/>
            <dbReference type="ChEBI" id="CHEBI:58772"/>
            <dbReference type="EC" id="1.8.4.11"/>
        </reaction>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="2 4">
            <text>[thioredoxin]-disulfide + H2O + L-methionyl-[protein] = [thioredoxin]-dithiol + L-methionyl-(S)-S-oxide-[protein]</text>
            <dbReference type="Rhea" id="RHEA:14217"/>
            <dbReference type="Rhea" id="RHEA-COMP:10698"/>
            <dbReference type="Rhea" id="RHEA-COMP:10700"/>
            <dbReference type="Rhea" id="RHEA-COMP:12313"/>
            <dbReference type="Rhea" id="RHEA-COMP:12315"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:16044"/>
            <dbReference type="ChEBI" id="CHEBI:29950"/>
            <dbReference type="ChEBI" id="CHEBI:44120"/>
            <dbReference type="ChEBI" id="CHEBI:50058"/>
            <dbReference type="EC" id="1.8.4.11"/>
        </reaction>
    </comment>
    <comment type="similarity">
        <text evidence="4">Belongs to the MsrA Met sulfoxide reductase family.</text>
    </comment>
    <dbReference type="EC" id="1.8.4.11" evidence="4"/>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX36583.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012205777.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_3952"/>
    <dbReference type="PRIDE" id="A9BWQ6"/>
    <dbReference type="EnsemblBacteria" id="ABX36583">
        <property type="protein sequence ID" value="ABX36583"/>
        <property type="gene ID" value="Daci_3952"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_3952"/>
    <dbReference type="eggNOG" id="COG0225">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_031040_10_0_4"/>
    <dbReference type="OMA" id="GYCAFVV"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0033744">
        <property type="term" value="F:L-methionine:thioredoxin-disulfide S-oxidoreductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="RHEA"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008113">
        <property type="term" value="F:peptide-methionine (S)-S-oxide reductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.1060.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01401">
        <property type="entry name" value="MsrA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002569">
        <property type="entry name" value="Met_Sox_Rdtase_MsrA_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036509">
        <property type="entry name" value="Met_Sox_Rdtase_MsrA_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01625">
        <property type="entry name" value="PMSR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55068">
        <property type="entry name" value="SSF55068"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00401">
        <property type="entry name" value="msrA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3 4 6" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="PMSR" evidence="5">
        <location>
            <begin position="5"/>
            <end position="157"/>
        </location>
    </feature>
    <feature type="active site" evidence="4">
        <location>
            <position position="12"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001063"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00001497"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023002"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01401"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="Pfam" id="PF01625"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="ABX36583.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="178" mass="19795" checksum="C97A3B5E259F1119" modified="2008-01-15" version="1">MATETIYLGGGCFWCTEAVFDRVRGVSDVQSGYANGDLDDPSYEDICTGQTGHAEVIRVQFDPAVIPLRDLLTVFFGTHDPTTLNRQGNDVGTQYRSGIYTTNEQQAEVARTLISELTQAGAYDAPIVTEVQPLASYWPAEDYHQDYFLNHPNQGYCAFVVGPKVQKFRGAFARWVKP</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="53" xmlns="http://uniprot.org/uniprot">
    <accession>A9BWZ3</accession>
    <name>A9BWZ3_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Daci_4347</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="4" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX36978.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_4347"/>
    <dbReference type="PRIDE" id="A9BWZ3"/>
    <dbReference type="EnsemblBacteria" id="ABX36978">
        <property type="protein sequence ID" value="ABX36978"/>
        <property type="gene ID" value="Daci_4347"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_4347"/>
    <dbReference type="eggNOG" id="COG4191">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_518489_0_0_4"/>
    <dbReference type="OMA" id="HCTHALV"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="2" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="186"/>
            <end position="207"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="121"/>
            <end position="145"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="121"/>
            <end position="137"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ABX36978.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="525" mass="54352" checksum="B1C2E67C0C13A1CA" modified="2008-01-15" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="77" xmlns="http://uniprot.org/uniprot">
    <accession>A9BX27</accession>
    <name>A9BX27_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">Protein-tyrosine-phosphatase</fullName>
            <ecNumber evidence="2">3.1.3.48</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="6" type="ordered locus">Daci_4381</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="7" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>H2O + O-phospho-L-tyrosyl-[protein] = L-tyrosyl-[protein] + phosphate</text>
            <dbReference type="Rhea" id="RHEA:10684"/>
            <dbReference type="Rhea" id="RHEA-COMP:10136"/>
            <dbReference type="Rhea" id="RHEA-COMP:10137"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:43474"/>
            <dbReference type="ChEBI" id="CHEBI:46858"/>
            <dbReference type="ChEBI" id="CHEBI:82620"/>
            <dbReference type="EC" id="3.1.3.48"/>
        </reaction>
    </comment>
    <dbReference type="EC" id="3.1.3.48" evidence="2"/>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX37012.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012206184.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_4381"/>
    <dbReference type="PRIDE" id="A9BX27"/>
    <dbReference type="EnsemblBacteria" id="ABX37012">
        <property type="protein sequence ID" value="ABX37012"/>
        <property type="gene ID" value="Daci_4381"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_4381"/>
    <dbReference type="eggNOG" id="COG0394">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_071415_3_0_4"/>
    <dbReference type="OMA" id="NTRIGIF"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004725">
        <property type="term" value="F:protein tyrosine phosphatase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023485">
        <property type="entry name" value="Ptyr_pPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036196">
        <property type="entry name" value="Ptyr_pPase_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01451">
        <property type="entry name" value="LMWPc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00226">
        <property type="entry name" value="LMWPc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52788">
        <property type="entry name" value="SSF52788"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="3" id="KW-0904">Protein phosphatase</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="LMWPc" evidence="5">
        <location>
            <begin position="7"/>
            <end position="151"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="4">
        <location>
            <begin position="112"/>
            <end position="134"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001490"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00013064"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022912"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="SMART" id="SM00226"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="ABX37012.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="171" mass="18397" checksum="423BBE50A6625546" modified="2008-01-15" version="1">MTSDKPLNVLFLCTHNSARSILAEGLLNHLGGGRFKAYSAGSSPRDNQQPHPMAIAALEQAGVCTEGLRSKSWDEFGAPDAPPMDLVITVCDSAAGEACPYWPGQPATAHWGYADPSRAEGSDEGSDEGRQAAFRQTLLAMRQRLERLVNLPPSSLARHALQQSARDLARD</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="90" xmlns="http://uniprot.org/uniprot">
    <accession>A9BXT1</accession>
    <name>A9BXT1_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="6">Pyrrolidone-carboxylate peptidase</fullName>
            <ecNumber evidence="6">3.4.19.3</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="6">5-oxoprolyl-peptidase</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="6">Pyroglutamyl-peptidase I</fullName>
            <shortName evidence="6">PGP-I</shortName>
            <shortName evidence="6">Pyrase</shortName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="6" type="primary">pcp</name>
        <name evidence="8" type="ordered locus">Daci_5729</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="9" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="6">Removes 5-oxoproline from various penultimate amino acid residues except L-proline.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="6 7">
            <text>Release of an N-terminal pyroglutamyl group from a polypeptide, the second amino acid generally not being Pro.</text>
            <dbReference type="EC" id="3.4.19.3"/>
        </reaction>
    </comment>
    <comment type="subunit">
        <text evidence="6">Homotetramer.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="6">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="1 6">Belongs to the peptidase C15 family.</text>
    </comment>
    <dbReference type="EC" id="3.4.19.3" evidence="6"/>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX38357.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012207526.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_5729"/>
    <dbReference type="MEROPS" id="C15.001"/>
    <dbReference type="PRIDE" id="A9BXT1"/>
    <dbReference type="EnsemblBacteria" id="ABX38357">
        <property type="protein sequence ID" value="ABX38357"/>
        <property type="gene ID" value="Daci_5729"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_5729"/>
    <dbReference type="eggNOG" id="COG2039">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_043960_4_0_4"/>
    <dbReference type="OMA" id="KLAYNHK"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005829">
        <property type="term" value="C:cytosol"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016920">
        <property type="term" value="F:pyroglutamyl-peptidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006508">
        <property type="term" value="P:proteolysis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd00501">
        <property type="entry name" value="Peptidase_C15"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.630.20">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00417">
        <property type="entry name" value="Pyrrolid_peptidase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000816">
        <property type="entry name" value="Peptidase_C15"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016125">
        <property type="entry name" value="Peptidase_C15-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036440">
        <property type="entry name" value="Peptidase_C15-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029762">
        <property type="entry name" value="PGP-I_bact-type"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR033694">
        <property type="entry name" value="PGPEP1_Cys_AS"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR23402">
        <property type="entry name" value="PTHR23402"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01470">
        <property type="entry name" value="Peptidase_C15"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF015592">
        <property type="entry name" value="Prld-crbxl_pptds"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00706">
        <property type="entry name" value="PYROGLUPTASE"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53182">
        <property type="entry name" value="SSF53182"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00504">
        <property type="entry name" value="pyro_pdase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01334">
        <property type="entry name" value="PYRASE_CYS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2 6" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="4 6 8" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="3 6" id="KW-0645">Protease</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="5 6" id="KW-0788">Thiol protease</keyword>
    <feature type="active site" evidence="6">
        <location>
            <position position="85"/>
        </location>
    </feature>
    <feature type="active site" evidence="6 7">
        <location>
            <position position="148"/>
        </location>
    </feature>
    <feature type="active site" evidence="6">
        <location>
            <position position="174"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00006641"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022490"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022670"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022807"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00417"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU10077"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="ABX38357.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="222" mass="23714" checksum="557EFA55AF056E2C" modified="2008-01-15" version="1">MTDSTSPRILVTGFEPFEQDPVNPSWEVARALHGETVAGAIVHGLQLRCVFGESLRQLQEALAQLQPVLVISLGLAGGRSEFTPERVAINIDDARIPDHAARQPVDQVVIPGAPAAYFSTLPIKAVVHNLRARGIPSSVSNTAGTFVCNHVFFALMHWLAQGKAAPGARGGFIHVPALPEQAARKPGMPSMCLADQVAAVRETIRTALTVTQDLKENAGQLH</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-01-19" version="57" xmlns="http://uniprot.org/uniprot">
    <accession>A9BXT8</accession>
    <name>A9BXT8_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="7">DoxX family protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ordered locus">Daci_5736</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="8" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the DoxX family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX38364.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012207533.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_5736"/>
    <dbReference type="EnsemblBacteria" id="ABX38364">
        <property type="protein sequence ID" value="ABX38364"/>
        <property type="gene ID" value="Daci_5736"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_5736"/>
    <dbReference type="eggNOG" id="COG2259">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_058421_8_3_4"/>
    <dbReference type="OMA" id="MSALMFH"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR032808">
        <property type="entry name" value="DoxX"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07681">
        <property type="entry name" value="DoxX"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5 6" id="KW-0472">Membrane</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 6" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="4 6" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="20"/>
            <end position="38"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="58"/>
            <end position="79"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="86"/>
            <end position="105"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="117"/>
            <end position="137"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00006679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="ABX38364.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="145" mass="15518" checksum="29A0CD4473390F28" modified="2008-01-15" version="1">MTRAATHRAAHAAASPWADFAPLLARVLLSLLFIYSGIGKLMGPEGTMAYIAKAGLPLPMLSYAMALVVELGVATALLLGWRTREAAAVMAVFSVMSALMFHSQFGDKGQLVQFLKNLAIAGGFVQLMLAPVARWSLDARRKASR</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="62" xmlns="http://uniprot.org/uniprot">
    <accession>A9BY16</accession>
    <name>A9BY16_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">General secretion pathway protein M</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_1307</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX33951.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012203237.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_1307"/>
    <dbReference type="EnsemblBacteria" id="ABX33951">
        <property type="protein sequence ID" value="ABX33951"/>
        <property type="gene ID" value="Daci_1307"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_1307"/>
    <dbReference type="eggNOG" id="ENOG5032V8G">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_1419404_0_0_4"/>
    <dbReference type="OMA" id="RAQYIYP"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.70.60">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR034756">
        <property type="entry name" value="T2SSM_b"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014717">
        <property type="entry name" value="Transl_elong_EF1B/ribosomal_S6"/>
    </dbReference>
    <dbReference type="Pfam" id="PF10741">
        <property type="entry name" value="T2SSM_b"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="12"/>
            <end position="35"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX33951.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="191" mass="20805" checksum="7564FA606EC98D59" modified="2008-01-15" version="1">MINPTPGLSGRQILLLTLSAAVLVLPLVLVALWVYGKHQWADGQLASLEPRYARVLGMQQQQTEIQEALEQLQGIRAQHVYPGDSDSTQTGNGVQQQLRSVMDRAGLSVTSSQVKATSEEGPYERISVSMTAEGPWPAVQMALASVRAIRPTIWVDDLQVNLRGSLQNTNPQLAPDLSAQFTVSIFRSKAS</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2021-09-29" version="73" xmlns="http://uniprot.org/uniprot">
    <accession>A9BY55</accession>
    <name>A9BY55_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Transcriptional regulator, MarR family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_1346</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX33990.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012203276.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_1346"/>
    <dbReference type="EnsemblBacteria" id="ABX33990">
        <property type="protein sequence ID" value="ABX33990"/>
        <property type="gene ID" value="Daci_1346"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_1346"/>
    <dbReference type="eggNOG" id="COG1846">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_083287_35_0_4"/>
    <dbReference type="OMA" id="GVSRHYD"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003700">
        <property type="term" value="F:DNA-binding transcription factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000835">
        <property type="entry name" value="HTH_MarR-typ"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036390">
        <property type="entry name" value="WH_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12802">
        <property type="entry name" value="MarR_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00347">
        <property type="entry name" value="HTH_MARR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46785">
        <property type="entry name" value="SSF46785"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50995">
        <property type="entry name" value="HTH_MARR_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HTH marR-type" evidence="1">
        <location>
            <begin position="11"/>
            <end position="144"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS50995"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX33990.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="155" mass="16746" checksum="E323EEAE89EF591D" modified="2008-01-15" version="1">MTSSTSSAASPVCTCFMVRSLSRKISQLYDDTLAPSGLRGTQFSLLVQARNAPDGPPTVSALAEQLHTDRTTMTRNLRTLQQAGFIDLVPGADARSRCVVVTPEGRARIREAAALWRQAQQRVRELCGSEQIGALESLVLSMLPVLETATQESAE</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="61" xmlns="http://uniprot.org/uniprot">
    <accession>A9BYB3</accession>
    <name>A9BYB3_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Transcriptional regulator, XRE family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_1608</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX34252.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012203537.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_1608"/>
    <dbReference type="PRIDE" id="A9BYB3"/>
    <dbReference type="EnsemblBacteria" id="ABX34252">
        <property type="protein sequence ID" value="ABX34252"/>
        <property type="gene ID" value="Daci_1608"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_1608"/>
    <dbReference type="eggNOG" id="COG1396">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_1459050_0_0_4"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd00093">
        <property type="entry name" value="HTH_XRE"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.260.40">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001387">
        <property type="entry name" value="Cro/C1-type_HTH"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010982">
        <property type="entry name" value="Lambda_DNA-bd_dom_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01381">
        <property type="entry name" value="HTH_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00530">
        <property type="entry name" value="HTH_XRE"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47413">
        <property type="entry name" value="SSF47413"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50943">
        <property type="entry name" value="HTH_CROC1"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HTH cro/C1-type" evidence="1">
        <location>
            <begin position="13"/>
            <end position="66"/>
        </location>
    </feature>
    <feature type="domain" description="HTH cro/C1-type" evidence="1">
        <location>
            <begin position="91"/>
            <end position="144"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS50943"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX34252.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="185" mass="20277" checksum="7B152783DE192C66" modified="2008-01-15" version="1">MNAEIRVIFGERLRQERERLGLSQADMAKLGGTKMRTYQDWERDVATVSAEFLARISAHGLDISFVLTGLRSFDPNAIQHERPEPTLAARLQQERQRLNLSEAELARKAGQAKQVLQQFESGALVPDATALQQLHLAGVDIGYVLLSLRSHAPDADVQALLAHYGKATDAGRALVRGVAELAGRG</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="51" xmlns="http://uniprot.org/uniprot">
    <accession>A9BYD9</accession>
    <name>A9BYD9_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Major head protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Daci_1634</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="2" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX34278.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012203563.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_1634"/>
    <dbReference type="PRIDE" id="A9BYD9"/>
    <dbReference type="EnsemblBacteria" id="ABX34278">
        <property type="protein sequence ID" value="ABX34278"/>
        <property type="gene ID" value="Daci_1634"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_1634"/>
    <dbReference type="eggNOG" id="COG4653">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_051005_0_0_4"/>
    <dbReference type="OMA" id="ASWINNN"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR024455">
        <property type="entry name" value="Phage_capsid"/>
    </dbReference>
    <dbReference type="Pfam" id="PF05065">
        <property type="entry name" value="Phage_capsid"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01554">
        <property type="entry name" value="major_cap_HK97"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ABX34278.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="405" mass="43668" checksum="86A8053B5198CC5F" modified="2008-01-15" version="1">MPIEKDIEQINTSLREVGEQIKAQAEKADKEIKAHAQLSRETRAKVDELLTEQGTLRANLATAEQLLAKLANGGGGGQQQPQTMGMQVTDSEDFKAFAANPRGSFRMPVQAAITSGSGSAGDLIVPDRVPGIVAPGLRRLTIRDLLNWGRTGSNAVDFARELVFTNNAGPVGENPSGGKPESNITFEAAQVPVVTIAHWVPASKQVLSDVPMLQSYIDGRLRYGLKLKEELQLLKGSGVGLNMDGIYTQATPYVNPGVVVQAETRIDRLRLALLQVELADYWADGIVISPLDWAAIELTKTADNAYLFTNPRTQELPSLWGRNVVPTQAMDPAEFLVGAFGGGLAAQGWDREDVSVSISFEDRDNFVKNMATVLCEERIALTVFRPASFVKGAFTGVAPQPPASS</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="59" xmlns="http://uniprot.org/uniprot">
    <accession>A9BYS7</accession>
    <name>A9BYS7_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="8">Probable lipid II flippase MurJ</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="8" type="primary">murJ</name>
        <name evidence="9" type="ordered locus">Daci_2182</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="9 10" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="10" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="8">Involved in peptidoglycan biosynthesis. Transports lipid-linked peptidoglycan precursors from the inner to the outer leaflet of the cytoplasmic membrane.</text>
    </comment>
    <comment type="pathway">
        <text evidence="8">Cell wall biogenesis; peptidoglycan biosynthesis.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="8">Cell inner membrane</location>
            <topology evidence="8">Multi-pass membrane protein</topology>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="8">Belongs to the MurJ/MviN family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX34822.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_2182"/>
    <dbReference type="PRIDE" id="A9BYS7"/>
    <dbReference type="EnsemblBacteria" id="ABX34822">
        <property type="protein sequence ID" value="ABX34822"/>
        <property type="gene ID" value="Daci_2182"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_2182"/>
    <dbReference type="eggNOG" id="COG0728">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_006797_5_3_4"/>
    <dbReference type="OMA" id="IFFVAFK"/>
    <dbReference type="UniPathway" id="UPA00219"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005887">
        <property type="term" value="C:integral component of plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015648">
        <property type="term" value="F:lipid-linked peptidoglycan transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0071555">
        <property type="term" value="P:cell wall organization"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009252">
        <property type="term" value="P:peptidoglycan biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008360">
        <property type="term" value="P:regulation of cell shape"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd13123">
        <property type="entry name" value="MATE_MurJ_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_02078">
        <property type="entry name" value="MurJ_MviN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004268">
        <property type="entry name" value="MurJ"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03023">
        <property type="entry name" value="MurJ"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR01806">
        <property type="entry name" value="VIRFACTRMVIN"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01695">
        <property type="entry name" value="murJ_mviN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="8" id="KW-0997">Cell inner membrane</keyword>
    <keyword evidence="2 8" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="4 8" id="KW-0133">Cell shape</keyword>
    <keyword evidence="8" id="KW-0961">Cell wall biogenesis/degradation</keyword>
    <keyword evidence="7 8" id="KW-0472">Membrane</keyword>
    <keyword evidence="5 8" id="KW-0573">Peptidoglycan synthesis</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 8" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="6 8" id="KW-1133">Transmembrane helix</keyword>
    <keyword evidence="8" id="KW-0813">Transport</keyword>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="142"/>
            <end position="166"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="186"/>
            <end position="206"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="218"/>
            <end position="236"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="242"/>
            <end position="265"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="299"/>
            <end position="320"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="340"/>
            <end position="360"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="372"/>
            <end position="392"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="412"/>
            <end position="434"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="446"/>
            <end position="467"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="473"/>
            <end position="492"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="504"/>
            <end position="524"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="544"/>
            <end position="565"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022960"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022984"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_02078"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="ABX34822.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="573" mass="61202" checksum="FEA9650DD6990595" modified="2008-01-15" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="41" xmlns="http://uniprot.org/uniprot">
    <accession>A9BYU0</accession>
    <name>A9BYU0_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_2195</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX34835.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012204118.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="PRIDE" id="A9BYU0"/>
    <dbReference type="EnsemblBacteria" id="ABX34835">
        <property type="protein sequence ID" value="ABX34835"/>
        <property type="gene ID" value="Daci_2195"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_2195"/>
    <dbReference type="HOGENOM" id="CLU_1292661_0_0_4"/>
    <dbReference type="OMA" id="DNGWYER"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="40"/>
            <end position="87"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="110"/>
            <end position="220"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="110"/>
            <end position="198"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX34835.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="220" mass="26825" checksum="D0918F42DC99920D" modified="2008-01-15" version="1">MPRSNAPTAQPHQQRDLRPLRMLRLLAGLGLAALVTACAVPPDGYSDMGSGYPSYPSYPSYPTYPSYPSGGGVIYPSYPTQPAYPDNGWYERQRLQRERDRLQYERERIQQERNRDAWRDRQEREREMRERDRDRDRQAQDRDRQLRERMQEQQRREAERQQRDRERDQGQQQRDRERQQRDREQQQRDREQQQRAIERMQRENQGGGNPYPTQDPRHWR</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="56" xmlns="http://uniprot.org/uniprot">
    <accession>A9BZB0</accession>
    <name>A9BZB0_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="6">Protein-arginine rhamnosyltransferase</fullName>
        </recommendedName>
        <alternativeName>
            <fullName evidence="7">EF-P arginine rhamnosyltransferase</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="8" type="ordered locus">Daci_2872</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="9" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="4">Protein-arginine rhamnosyltransferase that catalyzes the transfer of a single rhamnose to elongation factor P (EF-P) on 'Lys-32', a modification required for EF-P-dependent rescue of polyproline stalled ribosomes.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="3">
            <text>dTDP-beta-L-rhamnose + L-arginyl-[protein] = dTDP + H(+) + N(omega)-(alpha-L-rhamnosyl)-L-arginyl-[protein]</text>
            <dbReference type="Rhea" id="RHEA:66692"/>
            <dbReference type="Rhea" id="RHEA-COMP:10532"/>
            <dbReference type="Rhea" id="RHEA-COMP:17096"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:29965"/>
            <dbReference type="ChEBI" id="CHEBI:57510"/>
            <dbReference type="ChEBI" id="CHEBI:58369"/>
            <dbReference type="ChEBI" id="CHEBI:167445"/>
        </reaction>
        <physiologicalReaction direction="left-to-right" evidence="3">
            <dbReference type="Rhea" id="RHEA:66693"/>
        </physiologicalReaction>
    </comment>
    <comment type="similarity">
        <text evidence="5">Belongs to the glycosyltransferase 104 family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX35510.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012204720.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_2872"/>
    <dbReference type="PRIDE" id="A9BZB0"/>
    <dbReference type="EnsemblBacteria" id="ABX35510">
        <property type="protein sequence ID" value="ABX35510"/>
        <property type="gene ID" value="Daci_2872"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_2872"/>
    <dbReference type="eggNOG" id="COG4394">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_060250_0_0_4"/>
    <dbReference type="OMA" id="YFFFPGF"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0106361">
        <property type="term" value="F:protein-arginine rhamnosyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016633">
        <property type="entry name" value="EarP"/>
    </dbReference>
    <dbReference type="Pfam" id="PF10093">
        <property type="entry name" value="EarP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF015557">
        <property type="entry name" value="UCP015557"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR03837">
        <property type="entry name" value="efp_adjacent_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="1" id="KW-0328">Glycosyltransferase</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0808">Transferase</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022676"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00024292"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00024303"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00024346"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00024416"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00030025"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="ABX35510.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="377" mass="41321" checksum="8D346A77A46CBB30" modified="2008-01-15" version="1">MLAFNPIPPAPLPEQAVARTWDIFCQVIDNFGDIGVCWRAAADLASRGQRVRLWMDDASALAWMAPPPHPAGLSVHGWPTQAQDVPQTVGDVVIEAFGCEIPPPFLAAIARRAPLWINLEYLSAEDYVERCHRLPSPLMSGPAAGLTRWFFYPGFTAATGGLLREPELAARQAAFASEGRQAWRTRQGIGSGDCAISLFCYEPPALPQWLAQLHAAPPAPQATHLLVTPGRAAAAVQQAMASVPATEQGAVTRHALQPCPQPQFDEMLWACDLNLVRGEDSLVRALWAGQPLVWHIYPQHDDAHHDKLDAFLDWLQAPASLRAFHHAWNGMAPASTLPAITPALLKQWQECVQAARLRLLQQTPLIEQLQAFVTEKS</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="63" xmlns="http://uniprot.org/uniprot">
    <accession>A9BZG2</accession>
    <name>A9BZG2_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Oxidoreductase domain protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Daci_2924</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="4" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX35562.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012204772.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_2924"/>
    <dbReference type="PRIDE" id="A9BZG2"/>
    <dbReference type="EnsemblBacteria" id="ABX35562">
        <property type="protein sequence ID" value="ABX35562"/>
        <property type="gene ID" value="Daci_2924"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_2924"/>
    <dbReference type="eggNOG" id="COG0673">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_023194_17_1_4"/>
    <dbReference type="OMA" id="TLMEYDN"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000166">
        <property type="term" value="F:nucleotide binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004104">
        <property type="entry name" value="Gfo/Idh/MocA-like_OxRdtase_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000683">
        <property type="entry name" value="Gfo/Idh/MocA-like_OxRdtase_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036291">
        <property type="entry name" value="NAD(P)-bd_dom_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01408">
        <property type="entry name" value="GFO_IDH_MocA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02894">
        <property type="entry name" value="GFO_IDH_MocA_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51735">
        <property type="entry name" value="SSF51735"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="GFO_IDH_MocA" evidence="1">
        <location>
            <begin position="13"/>
            <end position="142"/>
        </location>
    </feature>
    <feature type="domain" description="GFO_IDH_MocA_C" evidence="2">
        <location>
            <begin position="154"/>
            <end position="384"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF01408"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF02894"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ABX35562.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="390" mass="42942" checksum="6BB8EEABA837D801" modified="2008-01-15" version="1">MIDATPMPGHPIAWAMVGGGQDSQIGPVHRSAAQRDHGLQLVAGAFDIDPVRGRQFGERLGLDAQRCYADYRAMFEAEARRPDGIRAVSIATPNNTHFEICRAALLAGLHVVCEKPLCFTTAEALQLLELSRASRRIVGVAYGYAGHQLMEQAREMVAQGELGEIRIVQMQFSHGFHSEAVEAASAAARWRMDPAHAGPSYVLGDLGTHPLYLSQLVLPGLEIERLMCSRQSFIGSRAPLEDNALALMQYRGGAMGYLWACAVNSGSMHGQRLRVIGSKASLEWWDEHPNQLRHEIQGRPAQVLDRGMDYLHPAARQEDRIGAGHAEGLFEAWANLYRRFALAMHATDRGDSLALGKIRYPDIQAGVEGVRWVENCVRSADAGGVWIDYR</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="63" xmlns="http://uniprot.org/uniprot">
    <accession>A9BZX2</accession>
    <name>A9BZX2_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Poly(R)-hydroxyalkanoic acid synthase, class I</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ordered locus">Daci_3600</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="5" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX36234.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012205434.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_3600"/>
    <dbReference type="ESTHER" id="delac-PHAC">
        <property type="family name" value="PHA_synth_I"/>
    </dbReference>
    <dbReference type="PRIDE" id="A9BZX2"/>
    <dbReference type="EnsemblBacteria" id="ABX36234">
        <property type="protein sequence ID" value="ABX36234"/>
        <property type="gene ID" value="Daci_3600"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_3600"/>
    <dbReference type="eggNOG" id="COG3243">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_017387_3_0_4"/>
    <dbReference type="OMA" id="YIYGSRE"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016746">
        <property type="term" value="F:acyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0042619">
        <property type="term" value="P:poly-hydroxybutyrate biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.1820">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029058">
        <property type="entry name" value="AB_hydrolase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010941">
        <property type="entry name" value="PhaC_N"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07167">
        <property type="entry name" value="PhaC_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53474">
        <property type="entry name" value="SSF53474"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0012">Acyltransferase</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="PhaC_N" evidence="3">
        <location>
            <begin position="101"/>
            <end position="268"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023315"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF07167"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="ABX36234.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="631" mass="69108" checksum="53826CC1370573F2" modified="2008-01-15" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="80" xmlns="http://uniprot.org/uniprot">
    <accession>A9C099</accession>
    <name>A9C099_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="8">ABC transporter related</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="8" type="ordered locus">Daci_4034</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="9" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX36665.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012205859.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_4034"/>
    <dbReference type="PRIDE" id="A9C099"/>
    <dbReference type="EnsemblBacteria" id="ABX36665">
        <property type="protein sequence ID" value="ABX36665"/>
        <property type="gene ID" value="Daci_4034"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_4034"/>
    <dbReference type="eggNOG" id="COG4181">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_000604_1_22_4"/>
    <dbReference type="OMA" id="YSLFPWR"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd03255">
        <property type="entry name" value="ABC_MJ0796_LolCDE_FtsE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003593">
        <property type="entry name" value="AAA+_ATPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003439">
        <property type="entry name" value="ABC_transporter-like_ATP-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017871">
        <property type="entry name" value="ABC_transporter-like_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017911">
        <property type="entry name" value="MacB_ATP-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00005">
        <property type="entry name" value="ABC_tran"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00382">
        <property type="entry name" value="AAA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00211">
        <property type="entry name" value="ABC_TRANSPORTER_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50893">
        <property type="entry name" value="ABC_TRANSPORTER_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3 6" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="1" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="5" id="KW-0472">Membrane</keyword>
    <keyword evidence="2 6" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4" id="KW-1278">Translocase</keyword>
    <feature type="domain" description="ABC transporter" evidence="7">
        <location>
            <begin position="10"/>
            <end position="236"/>
        </location>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <begin position="46"/>
            <end position="53"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022967"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00434"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="PROSITE" id="PS50893"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="ABX36665.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="236" mass="25479" checksum="5905F9725B0E8A9E" modified="2008-01-15" version="1">MSQSTAQPLIEVEHVFKSVSDSTGTLDILRDIDLRFSARETVAIVGASGSGKSTLLSILAGLDTPTRGTVRLQGQDMFALDEDARAAVRAQKLGFVFQSFQLLGNLTALENVMLPLELAGSREARRRATEMLERVGLGQRLGHYPKLLSGGEQQRVALARAFVVEPAVLLADEPTGSLDFATGETIMELMFALNRERGTTLVMVTHDRAIAARCERRVTIEAGRVASIEEGQALAA</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="61" xmlns="http://uniprot.org/uniprot">
    <accession>A9C0A6</accession>
    <name>A9C0A6_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Diguanylate cyclase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Daci_4041</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="4" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX36672.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_4041"/>
    <dbReference type="PRIDE" id="A9C0A6"/>
    <dbReference type="EnsemblBacteria" id="ABX36672">
        <property type="protein sequence ID" value="ABX36672"/>
        <property type="gene ID" value="Daci_4041"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_4041"/>
    <dbReference type="eggNOG" id="COG3706">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_000445_11_16_4"/>
    <dbReference type="OMA" id="ESAFFVF"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="CDD" id="cd01949">
        <property type="entry name" value="GGDEF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.70.270">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000160">
        <property type="entry name" value="GGDEF_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029787">
        <property type="entry name" value="Nucleotide_cyclase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043128">
        <property type="entry name" value="Rev_trsase/Diguanyl_cyclase"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00990">
        <property type="entry name" value="GGDEF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00267">
        <property type="entry name" value="GGDEF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55073">
        <property type="entry name" value="SSF55073"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00254">
        <property type="entry name" value="GGDEF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50887">
        <property type="entry name" value="GGDEF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="GGDEF" evidence="2">
        <location>
            <begin position="105"/>
            <end position="240"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="260"/>
            <end position="282"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS50887"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ABX36672.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="282" mass="31186" checksum="4B484EF9519CFBB8" modified="2008-01-15" version="1">MPARRQSSLHTDTLHWLFIQPSVTAPASHQSVYLRDLRLATAHALVTHAGGAVHLPTDSPTRYLQALIDELCSLSLRDPLTGLANRRHFRTIAEREIDRVARSGEAALMLMLDIDHFKQINDQHGHIVGDRVLQSVARTLTNCVRPMDTLARYGGEEFAIVLPACPATFGLSVAERIRSAIERMPVVISPTLTLQITISIGGAYALQWIRSTTTLWTERADKQLYLAKSAGRNRVHIEEQPDSTVSAEEKSLLFGPLYAPSPFDNGLNPDIATDVDPEDGLR</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="51" xmlns="http://uniprot.org/uniprot">
    <accession>A9C0I1</accession>
    <name>A9C0I1_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_4424</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the FrmR/RcnR family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX37054.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_4424"/>
    <dbReference type="PRIDE" id="A9C0I1"/>
    <dbReference type="EnsemblBacteria" id="ABX37054">
        <property type="protein sequence ID" value="ABX37054"/>
        <property type="gene ID" value="Daci_4424"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_4424"/>
    <dbReference type="eggNOG" id="COG1937">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_130332_3_0_4"/>
    <dbReference type="OMA" id="DCGPILQ"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0045892">
        <property type="term" value="P:negative regulation of transcription, DNA-templated"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.58.1000">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003735">
        <property type="entry name" value="Metal_Tscrpt_repr"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038390">
        <property type="entry name" value="Metal_Tscrpt_repr_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33677">
        <property type="entry name" value="PTHR33677"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02583">
        <property type="entry name" value="Trns_repr_metal"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00005260"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX37054.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="81" mass="8873" checksum="AB9CC9125B24191A" modified="2008-01-15" version="1">MLTRIRRIQGQAQALERALEAEHDCAAILQQLAAVRGAVNGMIFEVLEGHVRTHLGEGTAGGQAREDDVDLVLSVMRSYMK</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="56" xmlns="http://uniprot.org/uniprot">
    <accession>A9C0I6</accession>
    <name>A9C0I6_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Dimethylmenaquinone methyltransferase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Daci_4429</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="2" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX37059.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012206231.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_4429"/>
    <dbReference type="PRIDE" id="A9C0I6"/>
    <dbReference type="EnsemblBacteria" id="ABX37059">
        <property type="protein sequence ID" value="ABX37059"/>
        <property type="gene ID" value="Daci_4429"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_4429"/>
    <dbReference type="eggNOG" id="COG0684">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_072626_3_2_4"/>
    <dbReference type="OMA" id="GEIMVAY"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008168">
        <property type="term" value="F:methyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0032259">
        <property type="term" value="P:methylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd16841">
        <property type="entry name" value="RraA_family"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005493">
        <property type="entry name" value="RraA/RraA-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036704">
        <property type="entry name" value="RraA/RraA-like_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03737">
        <property type="entry name" value="RraA-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF89562">
        <property type="entry name" value="SSF89562"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0489">Methyltransferase</keyword>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0808">Transferase</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ABX37059.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="224" mass="23512" checksum="33DBBF8DEAA376C1" modified="2008-01-15" version="1">MIGLQILKRQRAVSLDIARRYLDVPVANVSDCMARMTAGGARLRPMHGGGRMAGPALTIKTRPGDNLMLHKALQLASPGDVIVVDAGGDLTNALIGEIMVGDAMRRQLGGVVINGAIRDAAWIRAGSFPVFAAGVTHRGPYKDGPGEINVPIAIDGMVIEPGDLMIGDDDGLLCVPYAQAQALLDAALGKQVVEARMVADIAAGTYSAPWIDETLKRLGCPIQP</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="73" xmlns="http://uniprot.org/uniprot">
    <accession>A9C0T3</accession>
    <name>A9C0T3_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="4">FAD linked oxidase domain protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ordered locus">Daci_5768</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="5" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX38396.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012207565.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_5768"/>
    <dbReference type="PRIDE" id="A9C0T3"/>
    <dbReference type="EnsemblBacteria" id="ABX38396">
        <property type="protein sequence ID" value="ABX38396"/>
        <property type="gene ID" value="Daci_5768"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_5768"/>
    <dbReference type="eggNOG" id="COG0277">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_017779_4_1_4"/>
    <dbReference type="OMA" id="CNDNMLA"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0071949">
        <property type="term" value="F:FAD binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016491">
        <property type="term" value="F:oxidoreductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.45.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.43.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.465.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016166">
        <property type="entry name" value="FAD-bd_PCMH"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036318">
        <property type="entry name" value="FAD-bd_PCMH-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016167">
        <property type="entry name" value="FAD-bd_PCMH_sub1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016169">
        <property type="entry name" value="FAD-bd_PCMH_sub2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016164">
        <property type="entry name" value="FAD-linked_Oxase-like_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004113">
        <property type="entry name" value="FAD-linked_oxidase_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006094">
        <property type="entry name" value="Oxid_FAD_bind_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016171">
        <property type="entry name" value="Vanillyl_alc_oxidase_C-sub2"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02913">
        <property type="entry name" value="FAD-oxidase_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01565">
        <property type="entry name" value="FAD_binding_4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55103">
        <property type="entry name" value="SSF55103"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56176">
        <property type="entry name" value="SSF56176"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51387">
        <property type="entry name" value="FAD_PCMH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0274">FAD</keyword>
    <keyword evidence="1" id="KW-0285">Flavoprotein</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="FAD-binding PCMH-type" evidence="3">
        <location>
            <begin position="53"/>
            <end position="234"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="491"/>
            <end position="519"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022827"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="PROSITE" id="PS51387"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="ABX38396.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="519" mass="54854" checksum="5F6C8EF1F85A5602" modified="2008-01-15" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="95" xmlns="http://uniprot.org/uniprot">
    <accession>A9C164</accession>
    <name>A9C164_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="3 8">Glutamine--fructose-6-phosphate aminotransferase [isomerizing]</fullName>
            <ecNumber evidence="2 8">2.6.1.16</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="8">D-fructose-6-phosphate amidotransferase</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="8">GFAT</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="8">Glucosamine-6-phosphate synthase</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="8">Hexosephosphate aminotransferase</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="8">L-glutamine--D-fructose-6-phosphate amidotransferase</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="8" type="primary">glmS</name>
        <name evidence="11" type="ordered locus">Daci_5899</name>
    </gene>
    <organism evidence="11 12">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="11 12" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="12">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="12" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="12">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="8">Catalyzes the first step in hexosamine metabolism, converting fructose-6P into glucosamine-6P using glutamine as a nitrogen source.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1 8">
            <text>D-fructose 6-phosphate + L-glutamine = D-glucosamine 6-phosphate + L-glutamate</text>
            <dbReference type="Rhea" id="RHEA:13237"/>
            <dbReference type="ChEBI" id="CHEBI:29985"/>
            <dbReference type="ChEBI" id="CHEBI:58359"/>
            <dbReference type="ChEBI" id="CHEBI:58725"/>
            <dbReference type="ChEBI" id="CHEBI:61527"/>
            <dbReference type="EC" id="2.6.1.16"/>
        </reaction>
    </comment>
    <comment type="subunit">
        <text evidence="8">Homodimer.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="8">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <dbReference type="EC" id="2.6.1.16" evidence="2 8"/>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX38527.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012207696.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_5899"/>
    <dbReference type="PRIDE" id="A9C164"/>
    <dbReference type="EnsemblBacteria" id="ABX38527">
        <property type="protein sequence ID" value="ABX38527"/>
        <property type="gene ID" value="Daci_5899"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_5899"/>
    <dbReference type="eggNOG" id="COG0449">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_012520_5_2_4"/>
    <dbReference type="OMA" id="TSYYSGC"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0097367">
        <property type="term" value="F:carbohydrate derivative binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004360">
        <property type="term" value="F:glutamine-fructose-6-phosphate transaminase (isomerizing) activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:1901137">
        <property type="term" value="P:carbohydrate derivative biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005975">
        <property type="term" value="P:carbohydrate metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006541">
        <property type="term" value="P:glutamine metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd05008">
        <property type="entry name" value="SIS_GlmS_GlmD_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="CDD" id="cd05009">
        <property type="entry name" value="SIS_GlmS_GlmD_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.60.20.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00164">
        <property type="entry name" value="GlmS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017932">
        <property type="entry name" value="GATase_2_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035466">
        <property type="entry name" value="GlmS/AgaS_SIS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035490">
        <property type="entry name" value="GlmS/FrlB_SIS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005855">
        <property type="entry name" value="GlmS_trans"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029055">
        <property type="entry name" value="Ntn_hydrolases_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001347">
        <property type="entry name" value="SIS_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR046348">
        <property type="entry name" value="SIS_dom_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10937:SF0">
        <property type="entry name" value="PTHR10937:SF0"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01380">
        <property type="entry name" value="SIS"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53697">
        <property type="entry name" value="SSF53697"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56235">
        <property type="entry name" value="SSF56235"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01135">
        <property type="entry name" value="glmS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51278">
        <property type="entry name" value="GATASE_TYPE_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51464">
        <property type="entry name" value="SIS"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4 8 11" id="KW-0032">Aminotransferase</keyword>
    <keyword evidence="8" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="7" id="KW-0315">Glutamine amidotransferase</keyword>
    <keyword evidence="12" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="6" id="KW-0677">Repeat</keyword>
    <keyword evidence="5 8 11" id="KW-0808">Transferase</keyword>
    <feature type="initiator methionine" description="Removed" evidence="8">
        <location>
            <position position="1"/>
        </location>
    </feature>
    <feature type="domain" description="Glutamine amidotransferase type-2" evidence="9">
        <location>
            <begin position="2"/>
            <end position="238"/>
        </location>
    </feature>
    <feature type="domain" description="SIS" evidence="10">
        <location>
            <begin position="315"/>
            <end position="455"/>
        </location>
    </feature>
    <feature type="domain" description="SIS" evidence="10">
        <location>
            <begin position="488"/>
            <end position="629"/>
        </location>
    </feature>
    <feature type="active site" description="Nucleophile; for GATase activity" evidence="8">
        <location>
            <position position="2"/>
        </location>
    </feature>
    <feature type="active site" description="For Fru-6P isomerization activity" evidence="8">
        <location>
            <position position="634"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001031"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00012916"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00016090"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022576"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022737"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022962"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00164"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="9">
        <source>
            <dbReference type="PROSITE" id="PS51278"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="10">
        <source>
            <dbReference type="PROSITE" id="PS51464"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="EMBL" id="ABX38527.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="639" mass="68980" checksum="A39E8FB09AF3F74A" modified="2008-01-15" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="69" xmlns="http://uniprot.org/uniprot">
    <accession>A9C1C5</accession>
    <name>A9C1C5_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Putative CBS domain and cyclic nucleotide-regulated nucleotidyltransferase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ordered locus">Daci_5960</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="5" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX38588.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012207757.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_5960"/>
    <dbReference type="PRIDE" id="A9C1C5"/>
    <dbReference type="EnsemblBacteria" id="ABX38588">
        <property type="protein sequence ID" value="ABX38588"/>
        <property type="gene ID" value="Daci_5960"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_5960"/>
    <dbReference type="eggNOG" id="COG2905">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_027866_1_0_4"/>
    <dbReference type="OMA" id="FPPFNQM"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008773">
        <property type="term" value="F:[protein-PII] uridylyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd00038">
        <property type="entry name" value="CAP_ED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.120.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.10.580.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000644">
        <property type="entry name" value="CBS_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR046342">
        <property type="entry name" value="CBS_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018490">
        <property type="entry name" value="cNMP-bd-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000595">
        <property type="entry name" value="cNMP-bd_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018821">
        <property type="entry name" value="DUF294_put_nucleoTrafse_sb-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005105">
        <property type="entry name" value="GlnD_Uridyltrans_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014710">
        <property type="entry name" value="RmlC-like_jellyroll"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00571">
        <property type="entry name" value="CBS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03445">
        <property type="entry name" value="DUF294"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF10335">
        <property type="entry name" value="DUF294_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00116">
        <property type="entry name" value="CBS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51206">
        <property type="entry name" value="SSF51206"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54631">
        <property type="entry name" value="SSF54631"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51371">
        <property type="entry name" value="CBS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50042">
        <property type="entry name" value="CNMP_BINDING_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0129">CBS domain</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Cyclic nucleotide-binding" evidence="2">
        <location>
            <begin position="21"/>
            <end position="135"/>
        </location>
    </feature>
    <feature type="domain" description="CBS" evidence="3">
        <location>
            <begin position="225"/>
            <end position="282"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00703"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS50042"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="PROSITE" id="PS51371"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="ABX38588.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="617" mass="66632" checksum="6554B48E58AF14E2" modified="2008-01-15" version="1"> </sequence>
</entry>
<entry dataset="Swiss-Prot" created="2009-04-14" modified="2022-08-03" version="87" xmlns="http://uniprot.org/uniprot">
    <accession>A9C1G5</accession>
    <name>PROA_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Gamma-glutamyl phosphate reductase</fullName>
            <shortName evidence="1">GPR</shortName>
            <ecNumber evidence="1">1.2.1.41</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="1">Glutamate-5-semialdehyde dehydrogenase</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="1">Glutamyl-gamma-semialdehyde dehydrogenase</fullName>
            <shortName evidence="1">GSA dehydrogenase</shortName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="1" type="primary">proA</name>
        <name type="ordered locus">Daci_6000</name>
    </gene>
    <organism>
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference key="1">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain>DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="1">Catalyzes the NADPH-dependent reduction of L-glutamate 5-phosphate into L-glutamate 5-semialdehyde and phosphate. The product spontaneously undergoes cyclization to form 1-pyrroline-5-carboxylate.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>L-glutamate 5-semialdehyde + NADP(+) + phosphate = H(+) + L-glutamyl 5-phosphate + NADPH</text>
            <dbReference type="Rhea" id="RHEA:19541"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:43474"/>
            <dbReference type="ChEBI" id="CHEBI:57783"/>
            <dbReference type="ChEBI" id="CHEBI:58066"/>
            <dbReference type="ChEBI" id="CHEBI:58274"/>
            <dbReference type="ChEBI" id="CHEBI:58349"/>
            <dbReference type="EC" id="1.2.1.41"/>
        </reaction>
    </comment>
    <comment type="pathway">
        <text evidence="1">Amino-acid biosynthesis; L-proline biosynthesis; L-glutamate 5-semialdehyde from L-glutamate: step 2/2.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="1">Belongs to the gamma-glutamyl phosphate reductase family.</text>
    </comment>
    <dbReference type="EC" id="1.2.1.41" evidence="1"/>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX38628.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012207797.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A9C1G5"/>
    <dbReference type="SMR" id="A9C1G5"/>
    <dbReference type="STRING" id="398578.Daci_6000"/>
    <dbReference type="PRIDE" id="A9C1G5"/>
    <dbReference type="EnsemblBacteria" id="ABX38628">
        <property type="protein sequence ID" value="ABX38628"/>
        <property type="gene ID" value="Daci_6000"/>
    </dbReference>
    <dbReference type="GeneID" id="60690361"/>
    <dbReference type="KEGG" id="dac:Daci_6000"/>
    <dbReference type="eggNOG" id="COG0014">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_030231_0_0_4"/>
    <dbReference type="OMA" id="PGVCNAM"/>
    <dbReference type="UniPathway" id="UPA00098">
        <property type="reaction ID" value="UER00360"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004350">
        <property type="term" value="F:glutamate-5-semialdehyde dehydrogenase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0050661">
        <property type="term" value="F:NADP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0055129">
        <property type="term" value="P:L-proline biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniPathway"/>
    </dbReference>
    <dbReference type="CDD" id="cd07079">
        <property type="entry name" value="ALDH_F18-19_ProA-GPR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.309.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.605.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00412">
        <property type="entry name" value="ProA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016161">
        <property type="entry name" value="Ald_DH/histidinol_DH"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016163">
        <property type="entry name" value="Ald_DH_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016162">
        <property type="entry name" value="Ald_DH_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015590">
        <property type="entry name" value="Aldehyde_DH_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020593">
        <property type="entry name" value="G-glutamylP_reductase_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012134">
        <property type="entry name" value="Glu-5-SA_DH"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000965">
        <property type="entry name" value="GPR_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00171">
        <property type="entry name" value="Aldedh"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF000151">
        <property type="entry name" value="GPR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53720">
        <property type="entry name" value="SSF53720"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00407">
        <property type="entry name" value="proA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01223">
        <property type="entry name" value="PROA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword id="KW-0028">Amino-acid biosynthesis</keyword>
    <keyword id="KW-0963">Cytoplasm</keyword>
    <keyword id="KW-0521">NADP</keyword>
    <keyword id="KW-0560">Oxidoreductase</keyword>
    <keyword id="KW-0641">Proline biosynthesis</keyword>
    <keyword id="KW-1185">Reference proteome</keyword>
    <feature type="chain" id="PRO_1000193593" description="Gamma-glutamyl phosphate reductase">
        <location>
            <begin position="1"/>
            <end position="426"/>
        </location>
    </feature>
    <evidence type="ECO:0000255" key="1">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00412"/>
        </source>
    </evidence>
    <sequence length="426" mass="45429" checksum="1D84CB6C3A405A9A" modified="2008-01-15" version="1">MNALNIVEYTHNLGVQAKVASAQMARASAAVKSRALLALARLLRENVEPLQTDNARDLDRAVANGLSAPMVDRLRLTPKVLETCAQGCEQLASMADVIGEIIGMKQMPSGIRVGQMRVPIGVFGMIYESRPNVTIEAASLSIKSGNACILRGGSEAIDSNKALAALVARALAEAGLPEHGVQLVQTTDREAVGQLIAMPDYVDVIIPRGGKGLIERISREAKVPVIKHLDGNCHTYVDDPCDIAMAVKVADNAKTNKYSPCNASESLLVARGVAAEFLPQIGAIYAAKGVEMRGCPESLAILKSVAGAQLAEATEQDWSEEYLAPIISVKIVAGVDEAIAHINRYSSHHTDAILTRDHMHAQRFLREVDSASVMVNASTRFADGFEYGLGAEIGISTDKFHARGPVGIEGLTSLKYVVLGEGEVRT</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="41" xmlns="http://uniprot.org/uniprot">
    <accession>A9C1L8</accession>
    <name>A9C1L8_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_6053</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX38681.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="PRIDE" id="A9C1L8"/>
    <dbReference type="EnsemblBacteria" id="ABX38681">
        <property type="protein sequence ID" value="ABX38681"/>
        <property type="gene ID" value="Daci_6053"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_6053"/>
    <dbReference type="eggNOG" id="ENOG5030291">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_086895_0_0_4"/>
    <dbReference type="OMA" id="TQYGDLR"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="50"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="203"/>
            <end position="240"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX38681.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="254" mass="26782" checksum="6A195A07D1DB0D32" modified="2008-01-15" version="1">MRAPMSVFNWFSRKPVPEQGRGSPGDDGQASAVARRDAGPGGRRSERSERREQLYGVVRDVMVRAGVLSASYKFKVLSLDNVGQRFVVMMDLARAYASETARLSEIEAMLAQAAKARMGAVVTAVYWRVSDQNAAAQAQAQVHSAATRAPRPAPPMAVPVAAAMEAAAPQRRRQDMAPFEPIDDQEMAAFKLAVAAMPAAGRGAGSAGSAAAAPAGVRRSGPLLGPGAGDRGADFPHSTLDHLDLGVTQYGELR</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="100" xmlns="http://uniprot.org/uniprot">
    <accession>A9C1W6</accession>
    <name>A9C1W6_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="5">Phosphoenolpyruvate--protein phosphotransferase</fullName>
            <ecNumber evidence="5">2.7.3.9</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="13" type="ordered locus">Daci_2663</name>
    </gene>
    <organism evidence="13 14">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="13 14" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="14">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="14" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="14">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>L-histidyl-[protein] + phosphoenolpyruvate = N(pros)-phospho-L-histidyl-[protein] + pyruvate</text>
            <dbReference type="Rhea" id="RHEA:23880"/>
            <dbReference type="Rhea" id="RHEA-COMP:9745"/>
            <dbReference type="Rhea" id="RHEA-COMP:9746"/>
            <dbReference type="ChEBI" id="CHEBI:15361"/>
            <dbReference type="ChEBI" id="CHEBI:29979"/>
            <dbReference type="ChEBI" id="CHEBI:58702"/>
            <dbReference type="ChEBI" id="CHEBI:64837"/>
            <dbReference type="EC" id="2.7.3.9"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="2">
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </cofactor>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="3">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="4">Belongs to the PEP-utilizing enzyme family.</text>
    </comment>
    <dbReference type="EC" id="2.7.3.9" evidence="5"/>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX35301.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_2663"/>
    <dbReference type="PRIDE" id="A9C1W6"/>
    <dbReference type="EnsemblBacteria" id="ABX35301">
        <property type="protein sequence ID" value="ABX35301"/>
        <property type="gene ID" value="Daci_2663"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_2663"/>
    <dbReference type="eggNOG" id="COG1080">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="eggNOG" id="COG1925">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="eggNOG" id="COG4668">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_007308_4_0_4"/>
    <dbReference type="OMA" id="MFPMISE"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008965">
        <property type="term" value="F:phosphoenolpyruvate-protein phosphotransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009401">
        <property type="term" value="P:phosphoenolpyruvate-dependent sugar phosphotransferase system"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016310">
        <property type="term" value="P:phosphorylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd00367">
        <property type="entry name" value="PTS-HPr_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="CDD" id="cd00211">
        <property type="entry name" value="PTS_IIA_fru"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.274.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.20.20.60">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.1340.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.930.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000032">
        <property type="entry name" value="HPr-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035895">
        <property type="entry name" value="HPr-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008279">
        <property type="entry name" value="PEP-util_enz_mobile_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000121">
        <property type="entry name" value="PEP_util_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023151">
        <property type="entry name" value="PEP_util_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036637">
        <property type="entry name" value="Phosphohistidine_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016152">
        <property type="entry name" value="PTrfase/Anion_transptr"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006318">
        <property type="entry name" value="PTS_EI-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002178">
        <property type="entry name" value="PTS_EIIA_type-2_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008731">
        <property type="entry name" value="PTS_EIN"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001020">
        <property type="entry name" value="PTS_HPr_His_P_site"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036618">
        <property type="entry name" value="PtsI_HPr-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015813">
        <property type="entry name" value="Pyrv/PenolPyrv_Kinase-like_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR040442">
        <property type="entry name" value="Pyrv_Kinase-like_dom_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF05524">
        <property type="entry name" value="PEP-utilisers_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00391">
        <property type="entry name" value="PEP-utilizers"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02896">
        <property type="entry name" value="PEP-utilizers_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00381">
        <property type="entry name" value="PTS-HPr"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00359">
        <property type="entry name" value="PTS_EIIA_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00107">
        <property type="entry name" value="PHOSPHOCPHPR"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47831">
        <property type="entry name" value="SSF47831"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51621">
        <property type="entry name" value="SSF51621"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52009">
        <property type="entry name" value="SSF52009"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55594">
        <property type="entry name" value="SSF55594"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55804">
        <property type="entry name" value="SSF55804"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01003">
        <property type="entry name" value="PTS_HPr_family"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01417">
        <property type="entry name" value="PTS_I_fam"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00742">
        <property type="entry name" value="PEP_ENZYMES_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51094">
        <property type="entry name" value="PTS_EIIA_TYPE_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00372">
        <property type="entry name" value="PTS_EIIA_TYPE_2_HIS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51350">
        <property type="entry name" value="PTS_HPR_DOM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00369">
        <property type="entry name" value="PTS_HPR_HIS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="7" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="10" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="9" id="KW-0598">Phosphotransferase system</keyword>
    <keyword evidence="13" id="KW-0670">Pyruvate</keyword>
    <keyword evidence="14" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="8" id="KW-0762">Sugar transport</keyword>
    <keyword evidence="13" id="KW-0808">Transferase</keyword>
    <keyword evidence="6" id="KW-0813">Transport</keyword>
    <feature type="domain" description="PTS EIIA type-2" evidence="11">
        <location>
            <begin position="26"/>
            <end position="165"/>
        </location>
    </feature>
    <feature type="domain" description="HPr" evidence="12">
        <location>
            <begin position="181"/>
            <end position="273"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00000683"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00001946"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00004496"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00007837"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00012232"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022448"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022490"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00022597"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00022683"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="11">
        <source>
            <dbReference type="PROSITE" id="PS51094"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="12">
        <source>
            <dbReference type="PROSITE" id="PS51350"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="13">
        <source>
            <dbReference type="EMBL" id="ABX35301.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="14">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="857" mass="89796" checksum="332F6B9B14CFE2DC" modified="2008-01-15" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2021-09-29" version="43" xmlns="http://uniprot.org/uniprot">
    <accession>A9C1X3</accession>
    <name>A9C1X3_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Daci_2971</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="2" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX35609.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012204819.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_2971"/>
    <dbReference type="EnsemblBacteria" id="ABX35609">
        <property type="protein sequence ID" value="ABX35609"/>
        <property type="gene ID" value="Daci_2971"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_2971"/>
    <dbReference type="eggNOG" id="ENOG5033A47">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_140156_0_0_4"/>
    <dbReference type="OMA" id="YLCAIHQ"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ABX35609.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="170" mass="18539" checksum="3B441F1BD0ECEC0A" modified="2008-01-15" version="1">MQATSDLSLPSPVPAPSEASLNQWEQLARRAHGHFHAGQIESALAMQMKALHVAQRLIAGPLLAEHADHCMAAWVVSHHNLAELLALRQQPALAIEYLCEAHQGLLALGDARHHAAAVCSAAWRHMRETHSALLQWQRQHGSQPRIDAALQASARVFDCTATALPPRLAH</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-01-19" version="77" xmlns="http://uniprot.org/uniprot">
    <accession>A9C220</accession>
    <name>A9C220_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Transcriptional regulator, LysR family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Daci_3018</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="4" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the LysR transcriptional regulatory family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX35656.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012204862.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_3018"/>
    <dbReference type="EnsemblBacteria" id="ABX35656">
        <property type="protein sequence ID" value="ABX35656"/>
        <property type="gene ID" value="Daci_3018"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_3018"/>
    <dbReference type="eggNOG" id="COG0583">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_039613_6_5_4"/>
    <dbReference type="OMA" id="AFWRQAQ"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003700">
        <property type="term" value="F:DNA-binding transcription factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005119">
        <property type="entry name" value="LysR_subst-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000847">
        <property type="entry name" value="Tscrpt_reg_HTH_LysR"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036390">
        <property type="entry name" value="WH_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00126">
        <property type="entry name" value="HTH_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03466">
        <property type="entry name" value="LysR_substrate"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00039">
        <property type="entry name" value="HTHLYSR"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46785">
        <property type="entry name" value="SSF46785"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50931">
        <property type="entry name" value="HTH_LYSR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HTH lysR-type" evidence="2">
        <location>
            <begin position="14"/>
            <end position="71"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00009437"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS50931"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ABX35656.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="316" mass="34364" checksum="C80CAB3B27C54FA1" modified="2008-01-15" version="1">MAMSARSRDPLDLVSLRQLRYFVSAMRAHSFSAASRDASISQAALSEQIALLESTLDVQLFDRASGRAVATASGHELDRRVSACLSELQAALRDVQARASTVAGLVRIGLVQSYAGCWVLPVVRRAQAQWPQLAIALRRRTAQALVEGVLRGDFDLAVSFDPEPHADLEILACFDEPVVAVGLKPRRRRRLLELSEVANHPLALLPSEYAMRRQLDNAFAAQGLKPGVHLESDTLEDLVHAARENGMVALLNGAAAMSLDVQDAVPLAERNLGRQACLVRSRSRHHGFAAQYVWDELSAATPTLPPAWGRCVAAAR</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="69" xmlns="http://uniprot.org/uniprot">
    <accession>A9C246</accession>
    <name>A9C246_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">DNA ligase (ATP)</fullName>
            <ecNumber evidence="1">6.5.1.1</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="7" type="ordered locus">Daci_3044</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="8" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EC" id="6.5.1.1" evidence="1"/>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX35682.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012204888.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_3044"/>
    <dbReference type="PRIDE" id="A9C246"/>
    <dbReference type="EnsemblBacteria" id="ABX35682">
        <property type="protein sequence ID" value="ABX35682"/>
        <property type="gene ID" value="Daci_3044"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_3044"/>
    <dbReference type="eggNOG" id="COG1793">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_005138_6_2_4"/>
    <dbReference type="OMA" id="WLFEESY"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
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        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
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        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003910">
        <property type="term" value="F:DNA ligase (ATP) activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
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    </dbReference>
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        <property type="match status" value="1"/>
    </dbReference>
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        <property type="match status" value="1"/>
    </dbReference>
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        <property type="entry name" value="DNA_ligase_ATP-dep_C"/>
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        <property type="entry name" value="DNA_ligase_ATP-dep_cent"/>
    </dbReference>
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    </dbReference>
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        <property type="entry name" value="DNA_ligase_N_sf"/>
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        <property type="entry name" value="NA-bd_OB-fold"/>
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        <property type="entry name" value="DNA_ligase_A_C"/>
        <property type="match status" value="1"/>
    </dbReference>
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        <property type="entry name" value="DNA_ligase_A_M"/>
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    </dbReference>
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        <property type="entry name" value="DNA_ligase_A_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50249">
        <property type="entry name" value="SSF50249"/>
        <property type="match status" value="1"/>
    </dbReference>
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        <property type="entry name" value="DNA_lig_bact"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00697">
        <property type="entry name" value="DNA_LIGASE_A1"/>
        <property type="match status" value="1"/>
    </dbReference>
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        <property type="entry name" value="DNA_LIGASE_A3"/>
        <property type="match status" value="1"/>
    </dbReference>
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    <keyword evidence="5" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="3" id="KW-0235">DNA replication</keyword>
    <keyword evidence="2 7" id="KW-0436">Ligase</keyword>
    <keyword evidence="4" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="DNA_LIGASE_A3" evidence="6">
        <location>
            <begin position="328"/>
            <end position="460"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00012727"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022598"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022705"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="PROSITE" id="PS50160"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="ABX35682.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="563" mass="61759" checksum="80C66D36809FA783" modified="2008-01-15" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-01-19" version="39" xmlns="http://uniprot.org/uniprot">
    <accession>A9C2C7</accession>
    <name>A9C2C7_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Daci_3433</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
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        <lineage>
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            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
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            <taxon>Comamonadaceae</taxon>
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        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
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                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
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            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="2" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX36071.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_3433"/>
    <dbReference type="EnsemblBacteria" id="ABX36071">
        <property type="protein sequence ID" value="ABX36071"/>
        <property type="gene ID" value="Daci_3433"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_3433"/>
    <dbReference type="eggNOG" id="ENOG5033CU8">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_1624428_0_0_4"/>
    <dbReference type="OMA" id="QINECAV"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ABX36071.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="163" mass="16763" checksum="F7896155924BE411" modified="2008-01-15" version="1">MPKHEWRGTELRFQKDQETWGKWVDLRGPPGSGSVAVLSSVETCAPIGVTTVKVGPLPISGHSVVACDSAGELVAADATNPAHRGAVLGLVADAYSPGDDAVVQTGYVLEHAGWTWAPGPVLVGLSGQLAQAPPAGALFAQVIGRALSSTRVLIDINPPITLA</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="35" xmlns="http://uniprot.org/uniprot">
    <accession>A9C2D2</accession>
    <name>A9C2D2_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Daci_3438</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="2" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX36076.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012205276.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_3438"/>
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    <dbReference type="EnsemblBacteria" id="ABX36076">
        <property type="protein sequence ID" value="ABX36076"/>
        <property type="gene ID" value="Daci_3438"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_3438"/>
    <dbReference type="eggNOG" id="ENOG5032ZUH">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_110153_0_0_4"/>
    <dbReference type="OMA" id="NTSELVW"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004195">
        <property type="entry name" value="Head_decoration_D"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02924">
        <property type="entry name" value="HDPD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ABX36076.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="214" mass="21271" checksum="BA06730EA5BD1C23" modified="2008-01-15" version="1">MATALYNNPPLADFILHEASGQRSRDNVHVRQSGAEVKSGALLVQDTVGGVAFDMDEGATGNPTISAASASALAIEGAYTIDFTAATAFVVKDPSGTQVGSAGALGTAFSAGGIGFTLTAGTTAAVAGDSATLDVIPADDNYLPYTGTGTAVAILYSHLPAATGLKAAVAFTSDCEVKRSALTGLTAAAEDDLRKVGIKVRGAVGGLSIHTPAL</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="79" xmlns="http://uniprot.org/uniprot">
    <accession>A9C2J4</accession>
    <name>A9C2J4_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Transcriptional regulator, GntR family with aminotransferase domain</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Daci_3711</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="4" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">In the C-terminal section; belongs to the class-I pyridoxal-phosphate-dependent aminotransferase family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX36343.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012205539.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_3711"/>
    <dbReference type="PRIDE" id="A9C2J4"/>
    <dbReference type="EnsemblBacteria" id="ABX36343">
        <property type="protein sequence ID" value="ABX36343"/>
        <property type="gene ID" value="Daci_3711"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_3711"/>
    <dbReference type="eggNOG" id="COG1167">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_017584_0_1_4"/>
    <dbReference type="OMA" id="WQSYVET"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003700">
        <property type="term" value="F:DNA-binding transcription factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030170">
        <property type="term" value="F:pyridoxal phosphate binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008483">
        <property type="term" value="F:transaminase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009058">
        <property type="term" value="P:biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd07377">
        <property type="entry name" value="WHTH_GntR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.640.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004839">
        <property type="entry name" value="Aminotransferase_I/II"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015424">
        <property type="entry name" value="PyrdxlP-dep_Trfase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015421">
        <property type="entry name" value="PyrdxlP-dep_Trfase_major"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000524">
        <property type="entry name" value="Tscrpt_reg_HTH_GntR"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036390">
        <property type="entry name" value="WH_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00155">
        <property type="entry name" value="Aminotran_1_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00392">
        <property type="entry name" value="GntR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00035">
        <property type="entry name" value="HTHGNTR"/>
    </dbReference>
    <dbReference type="SMART" id="SM00345">
        <property type="entry name" value="HTH_GNTR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46785">
        <property type="entry name" value="SSF46785"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53383">
        <property type="entry name" value="SSF53383"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50949">
        <property type="entry name" value="HTH_GNTR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-0032">Aminotransferase</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="HTH gntR-type" evidence="2">
        <location>
            <begin position="22"/>
            <end position="90"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00005384"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS50949"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ABX36343.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="504" mass="55675" checksum="D2BB540AC60DC44D" modified="2008-01-15" version="1">MSKTFELETLKIRMGDTDLRQLDLHQRVQRAMRALILDGALLPGLKLPATRSLADSLGIARDTVENAYTQLHRDGFIVRRQGSGSYVSETIGTELRGRAARRGRSPEHERSAQVAAAGRAGAGLSRRGQAIVDGGGIADQQTIRAFATGLPETRTFPTDVWERLQRQALKDYRASVLLHGDPQGAEPLRKAIATYLNLERGAKVDAGQIVVLSSTRQALFLCAQLLVDAGRPILLENPGYFGARKAFESAEAKVLPIDVDAQGIRTDLLHADRSGATCVYVTPSHQYPTGVTMQLERRLDLIRWAFESGRWIIEDDYDSEFHYDGMPTACVQGLDKHARTIYIGTFGKTLYPGLRMGYMALPQELVRAFVQARSIMDGHTPQIQQLTLARFMEDGHYNSHVRAMRKLYAGRREVILESIGRHLAGIVTAPRPQGGMQVPCLLEPGWSEEDTIRRAAAAGVLLQGLSRLYAGEQRQPGWLLGYASLTAYEIEAAVLRLANALRKP</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2021-06-02" version="43" xmlns="http://uniprot.org/uniprot">
    <accession>A9C2P5</accession>
    <name>A9C2P5_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="8">Tripartite ATP-independent periplasmic transporter DctQ component</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="8" type="ordered locus">Daci_3762</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="9" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX36394.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012205588.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_3762"/>
    <dbReference type="EnsemblBacteria" id="ABX36394">
        <property type="protein sequence ID" value="ABX36394"/>
        <property type="gene ID" value="Daci_3762"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_3762"/>
    <dbReference type="eggNOG" id="COG3090">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_086356_9_0_4"/>
    <dbReference type="OMA" id="EHFMVLA"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007387">
        <property type="entry name" value="TRAP_DctQ"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR35011">
        <property type="entry name" value="PTHR35011"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04290">
        <property type="entry name" value="DctQ"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="6 7" id="KW-0472">Membrane</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4 7" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="5 7" id="KW-1133">Transmembrane helix</keyword>
    <keyword evidence="2" id="KW-0813">Transport</keyword>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="20"/>
            <end position="41"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="53"/>
            <end position="71"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="92"/>
            <end position="114"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="126"/>
            <end position="148"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022448"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="ABX36394.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="168" mass="18071" checksum="606DB327B07327D4" modified="2008-01-15" version="1">MQSDSPAVRPKPRLQHFAEVLMVLALAGMVIAVFINVVLRYVFHTSIVSYEEISRLLFVWLVAIGAIVAAFEGSHLGFDLVTSRVGPGARKALFWVSQALVLVCMGLLLWGSWAQVEAGLNSYSTVLGYPLALGAAATLVLAVGLLVVTLRDLRRGAPAENHAETTVE</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2020-10-07" version="27" xmlns="http://uniprot.org/uniprot">
    <accession>A9C2W3</accession>
    <name>A9C2W3_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Daci_4136</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="2" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX36767.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_4136"/>
    <dbReference type="EnsemblBacteria" id="ABX36767">
        <property type="protein sequence ID" value="ABX36767"/>
        <property type="gene ID" value="Daci_4136"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_4136"/>
    <dbReference type="HOGENOM" id="CLU_2522067_0_0_4"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ABX36767.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="84" mass="9192" checksum="269822CD6741D4AB" modified="2008-01-15" version="1">MGDPVTTAPTPSRADALIREHRASMHPETLRAWASDAVDELGRLQADNELLRGDYALRGAQIQRMATLIDELEARKAPSPAKEA</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="48" xmlns="http://uniprot.org/uniprot">
    <accession>A9C2W4</accession>
    <name>A9C2W4_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Phage transcriptional regulator, AlpA</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_4137</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX36768.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_4137"/>
    <dbReference type="PRIDE" id="A9C2W4"/>
    <dbReference type="EnsemblBacteria" id="ABX36768">
        <property type="protein sequence ID" value="ABX36768"/>
        <property type="gene ID" value="Daci_4137"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_4137"/>
    <dbReference type="eggNOG" id="COG3311">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_2259155_0_0_4"/>
    <dbReference type="OMA" id="AWVMSRP"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010260">
        <property type="entry name" value="AlpA"/>
    </dbReference>
    <dbReference type="Pfam" id="PF05930">
        <property type="entry name" value="Phage_AlpA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="97"/>
            <end position="124"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX36768.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="124" mass="13459" checksum="B80937E678AE767A" modified="2008-01-15" version="1">MASTRWPFHAWHQPQAREEHAMTKKEKIEAASGGDALAIVTMRPISISLQEAARAVDLSESQIQKLVQTGDFPRPRQLSARRVGFIVAEVEAWVMSRPPSECLPAPDSGYGRAGKPGKSASPPG</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="59" xmlns="http://uniprot.org/uniprot">
    <accession>A9C2X1</accession>
    <name>A9C2X1_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_4144</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX36775.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012205955.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_4144"/>
    <dbReference type="PRIDE" id="A9C2X1"/>
    <dbReference type="EnsemblBacteria" id="ABX36775">
        <property type="protein sequence ID" value="ABX36775"/>
        <property type="gene ID" value="Daci_4144"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_4144"/>
    <dbReference type="eggNOG" id="COG1475">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_028960_2_0_4"/>
    <dbReference type="OMA" id="WRETHDE"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR022304">
        <property type="entry name" value="ICE_PFGI_1_ParB"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036086">
        <property type="entry name" value="ParB/Sulfiredoxin_sf"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF110849">
        <property type="entry name" value="SSF110849"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR03764">
        <property type="entry name" value="ICE_PFGI_1_parB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="292"/>
            <end position="344"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Pro residues" evidence="1">
        <location>
            <begin position="302"/>
            <end position="328"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX36775.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="530" mass="58400" checksum="4AA826A1FAB140B4" modified="2008-01-15" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="66" xmlns="http://uniprot.org/uniprot">
    <accession>A9C2Y9</accession>
    <name>A9C2Y9_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="3">ATP-dependent endonuclease family protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Daci_4162</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="4" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX36793.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012205971.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_4162"/>
    <dbReference type="PRIDE" id="A9C2Y9"/>
    <dbReference type="EnsemblBacteria" id="ABX36793">
        <property type="protein sequence ID" value="ABX36793"/>
        <property type="gene ID" value="Daci_4162"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_4162"/>
    <dbReference type="eggNOG" id="COG1195">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="eggNOG" id="COG3593">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_446007_0_0_4"/>
    <dbReference type="OMA" id="VDEHDFY"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016887">
        <property type="term" value="F:ATP hydrolysis activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004519">
        <property type="term" value="F:endonuclease activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041685">
        <property type="entry name" value="AAA_15"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003959">
        <property type="entry name" value="ATPase_AAA_core"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13175">
        <property type="entry name" value="AAA_15"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13304">
        <property type="entry name" value="AAA_21"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-0255">Endonuclease</keyword>
    <keyword evidence="3" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="3" id="KW-0540">Nuclease</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="AAA_15" evidence="1">
        <location>
            <begin position="1"/>
            <end position="49"/>
        </location>
    </feature>
    <feature type="domain" description="ATPase_AAA_core" evidence="2">
        <location>
            <begin position="276"/>
            <end position="351"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF13175"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF13304"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ABX36793.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="600" mass="66479" checksum="8AEF9CB9B8DBD1DE" modified="2008-01-15" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-05-25" version="50" xmlns="http://uniprot.org/uniprot">
    <accession>A9C300</accession>
    <name>A9C300_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Daci_4173</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="4" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX36804.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012205982.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_4173"/>
    <dbReference type="EnsemblBacteria" id="ABX36804">
        <property type="protein sequence ID" value="ABX36804"/>
        <property type="gene ID" value="Daci_4173"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_4173"/>
    <dbReference type="eggNOG" id="ENOG502ZUPX">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_148565_1_0_4"/>
    <dbReference type="OMA" id="REGKTNW"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR021356">
        <property type="entry name" value="Integr_conj_element_PFL4702"/>
    </dbReference>
    <dbReference type="Pfam" id="PF11190">
        <property type="entry name" value="DUF2976"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR03745">
        <property type="entry name" value="conj_TIGR03745"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
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    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="signal peptide" evidence="2">
        <location>
            <begin position="1"/>
            <end position="29"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5002736108" evidence="2">
        <location>
            <begin position="30"/>
            <end position="119"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="53"/>
            <end position="78"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="90"/>
            <end position="112"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ABX36804.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="119" mass="12680" checksum="3C2840CCE99BFE99" modified="2008-01-15" version="1">MPNRILTTRFVQRAAVALGAAALPALSFAQGLPQLENPTRGAGSGIMETIRNYGYDIIMLVALLVVASMFIGVCYHAYGTYAEIHTGRKTWGQFGLTVAIGAVLLVIGIWLLTEATGIL</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="56" xmlns="http://uniprot.org/uniprot">
    <accession>A9BLG0</accession>
    <name>A9BLG0_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Protocatechuate 4,5-dioxygenase, alpha subunit</fullName>
            <ecNumber evidence="2">1.13.11.8</ecNumber>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_3814</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EC" id="1.13.11.8" evidence="2"/>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX36445.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012205639.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_3814"/>
    <dbReference type="PRIDE" id="A9BLG0"/>
    <dbReference type="EnsemblBacteria" id="ABX36445">
        <property type="protein sequence ID" value="ABX36445"/>
        <property type="gene ID" value="Daci_3814"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_3814"/>
    <dbReference type="eggNOG" id="COG3384">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_157261_0_0_4"/>
    <dbReference type="OMA" id="MSGMNEE"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0018579">
        <property type="term" value="F:protocatechuate 4,5-dioxygenase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="CDD" id="cd07924">
        <property type="entry name" value="PCA_45_Doxase_A"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.700.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036622">
        <property type="entry name" value="LigA_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014159">
        <property type="entry name" value="PCA_LigA"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011986">
        <property type="entry name" value="Xdiol_dOase_LigA"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07746">
        <property type="entry name" value="LigA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48076">
        <property type="entry name" value="SSF48076"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR02792">
        <property type="entry name" value="PCA_ligA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0223">Dioxygenase</keyword>
    <keyword evidence="2" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="LigA" evidence="1">
        <location>
            <begin position="27"/>
            <end position="112"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF07746"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX36445.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="135" mass="15471" checksum="EC644E962A3FC37B" modified="2008-01-15" version="1">MALDKPYLDVPGTTVFDAEQSRKGYWLNQFCMSLMKAENRERFRADERAYLGEWAMTAEQRQAVLDRDLNRCIALGGNIYFLVKIGATDGVSVQNMVSTMSGMNEEDYRQMMLGGGRSIEGNRYLHEQERQEKGI</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="77" xmlns="http://uniprot.org/uniprot">
    <accession>A9BLP9</accession>
    <name>A9BLP9_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Helicase domain protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ordered locus">Daci_4207</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="5" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX36838.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012206010.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_4207"/>
    <dbReference type="PRIDE" id="A9BLP9"/>
    <dbReference type="EnsemblBacteria" id="ABX36838">
        <property type="protein sequence ID" value="ABX36838"/>
        <property type="gene ID" value="Daci_4207"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_4207"/>
    <dbReference type="eggNOG" id="COG0553">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_008466_2_0_4"/>
    <dbReference type="OMA" id="SHNFRNG"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0140658">
        <property type="term" value="F:ATP-dependent chromatin remodeler activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004386">
        <property type="term" value="F:helicase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.10810">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014001">
        <property type="entry name" value="Helicase_ATP-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001650">
        <property type="entry name" value="Helicase_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038718">
        <property type="entry name" value="SNF2-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000330">
        <property type="entry name" value="SNF2_N"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00271">
        <property type="entry name" value="Helicase_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00176">
        <property type="entry name" value="SNF2-rel_dom"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00487">
        <property type="entry name" value="DEXDc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00490">
        <property type="entry name" value="HELICc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51192">
        <property type="entry name" value="HELICASE_ATP_BIND_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51194">
        <property type="entry name" value="HELICASE_CTER"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1 4" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="1 4" id="KW-0347">Helicase</keyword>
    <keyword evidence="1 4" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="1 4" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Helicase ATP-binding" evidence="2">
        <location>
            <begin position="249"/>
            <end position="410"/>
        </location>
    </feature>
    <feature type="domain" description="Helicase C-terminal" evidence="3">
        <location>
            <begin position="684"/>
            <end position="858"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022806"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS51192"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="PROSITE" id="PS51194"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="ABX36838.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="1077" mass="120117" checksum="9B9E52E9E7E3C6BF" modified="2008-01-15" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="92" xmlns="http://uniprot.org/uniprot">
    <accession>A9BM01</accession>
    <name>A9BM01_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Ubiquinone biosynthesis O-methyltransferase</fullName>
        </recommendedName>
        <alternativeName>
            <fullName evidence="1">2-polyprenyl-6-hydroxyphenol methylase</fullName>
            <ecNumber evidence="1">2.1.1.222</ecNumber>
        </alternativeName>
        <alternativeName>
            <fullName evidence="1">3-demethylubiquinone 3-O-methyltransferase</fullName>
            <ecNumber evidence="1">2.1.1.64</ecNumber>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="1" type="primary">ubiG</name>
        <name evidence="2" type="ordered locus">Daci_4717</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="1">O-methyltransferase that catalyzes the 2 O-methylation steps in the ubiquinone biosynthetic pathway.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>a 3-(all-trans-polyprenyl)benzene-1,2-diol + S-adenosyl-L-methionine = a 2-methoxy-6-(all-trans-polyprenyl)phenol + H(+) + S-adenosyl-L-homocysteine</text>
            <dbReference type="Rhea" id="RHEA:31411"/>
            <dbReference type="Rhea" id="RHEA-COMP:9550"/>
            <dbReference type="Rhea" id="RHEA-COMP:9551"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:57856"/>
            <dbReference type="ChEBI" id="CHEBI:59789"/>
            <dbReference type="ChEBI" id="CHEBI:62729"/>
            <dbReference type="ChEBI" id="CHEBI:62731"/>
            <dbReference type="EC" id="2.1.1.222"/>
        </reaction>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>a 3-demethylubiquinol + S-adenosyl-L-methionine = a ubiquinol + H(+) + S-adenosyl-L-homocysteine</text>
            <dbReference type="Rhea" id="RHEA:44380"/>
            <dbReference type="Rhea" id="RHEA-COMP:9566"/>
            <dbReference type="Rhea" id="RHEA-COMP:10914"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:17976"/>
            <dbReference type="ChEBI" id="CHEBI:57856"/>
            <dbReference type="ChEBI" id="CHEBI:59789"/>
            <dbReference type="ChEBI" id="CHEBI:84422"/>
            <dbReference type="EC" id="2.1.1.64"/>
        </reaction>
    </comment>
    <comment type="pathway">
        <text evidence="1">Cofactor biosynthesis; ubiquinone biosynthesis.</text>
    </comment>
    <comment type="similarity">
        <text evidence="1">Belongs to the methyltransferase superfamily. UbiG/COQ3 family.</text>
    </comment>
    <dbReference type="EC" id="2.1.1.222" evidence="1"/>
    <dbReference type="EC" id="2.1.1.64" evidence="1"/>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX37346.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012206516.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_4717"/>
    <dbReference type="PRIDE" id="A9BM01"/>
    <dbReference type="EnsemblBacteria" id="ABX37346">
        <property type="protein sequence ID" value="ABX37346"/>
        <property type="gene ID" value="Daci_4717"/>
    </dbReference>
    <dbReference type="GeneID" id="60688693"/>
    <dbReference type="KEGG" id="dac:Daci_4717"/>
    <dbReference type="eggNOG" id="COG2227">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_042432_5_0_4"/>
    <dbReference type="OMA" id="RGTHDWE"/>
    <dbReference type="UniPathway" id="UPA00232"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="GO" id="GO:0102208">
        <property type="term" value="F:2-polyprenyl-6-hydroxyphenol methylase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="RHEA"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008425">
        <property type="term" value="F:2-polyprenyl-6-methoxy-1,4-benzoquinone methyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008689">
        <property type="term" value="F:3-demethylubiquinone-9 3-O-methyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0032259">
        <property type="term" value="P:methylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006744">
        <property type="term" value="P:ubiquinone biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.150">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00472">
        <property type="entry name" value="UbiG"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029063">
        <property type="entry name" value="SAM-dependent_MTases_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010233">
        <property type="entry name" value="UbiG_MeTrfase"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53335">
        <property type="entry name" value="SSF53335"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01983">
        <property type="entry name" value="UbiG"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="1 2" id="KW-0489">Methyltransferase</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0949">S-adenosyl-L-methionine</keyword>
    <keyword evidence="1 2" id="KW-0808">Transferase</keyword>
    <keyword evidence="2" id="KW-0830">Ubiquinone</keyword>
    <keyword evidence="1" id="KW-0831">Ubiquinone biosynthesis</keyword>
    <feature type="binding site" evidence="1">
        <location>
            <position position="41"/>
        </location>
        <ligand>
            <name>S-adenosyl-L-methionine</name>
            <dbReference type="ChEBI" id="CHEBI:59789"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <position position="60"/>
        </location>
        <ligand>
            <name>S-adenosyl-L-methionine</name>
            <dbReference type="ChEBI" id="CHEBI:59789"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <position position="82"/>
        </location>
        <ligand>
            <name>S-adenosyl-L-methionine</name>
            <dbReference type="ChEBI" id="CHEBI:59789"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <position position="127"/>
        </location>
        <ligand>
            <name>S-adenosyl-L-methionine</name>
            <dbReference type="ChEBI" id="CHEBI:59789"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00472"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX37346.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="240" mass="26283" checksum="FF6E6634B8818274" modified="2008-01-15" version="1">MSNAINVNADPAELEKFSSLAHRWWDPESEFKPLHQINPLRLDWIDAQAPLKGRRVLDVGCGGGILADSMARKGAREVVGIDLATKALRVAQLHALETGTPNIHYHEVSVERLAEEQPGSFDVVTCMEMLEHVPDPASVVAACAELVKPGGWVFFSTINRSAKAFGLAIVAAEYLLKMIPKGTHEYAKLIQPSELAMFARQAGLDLQASKGLQHNPITGRYWLSADTSVNYMLATRRAEG</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="83" xmlns="http://uniprot.org/uniprot">
    <accession>A9BMI5</accession>
    <name>A9BMI5_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="7">Recombination protein RecR</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="7" type="primary">recR</name>
        <name evidence="9" type="ordered locus">Daci_4901</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="9 10" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="10" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="7">May play a role in DNA repair. It seems to be involved in an RecBC-independent recombinational process of DNA repair. It may act with RecF and RecO.</text>
    </comment>
    <comment type="similarity">
        <text evidence="7">Belongs to the RecR family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX37530.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012206700.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_4901"/>
    <dbReference type="PRIDE" id="A9BMI5"/>
    <dbReference type="EnsemblBacteria" id="ABX37530">
        <property type="protein sequence ID" value="ABX37530"/>
        <property type="gene ID" value="Daci_4901"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_4901"/>
    <dbReference type="eggNOG" id="COG0353">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_060739_1_2_4"/>
    <dbReference type="OMA" id="DVMAIEN"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006310">
        <property type="term" value="P:DNA recombination"/>
        <property type="evidence" value="ECO:0007669"/>
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    </dbReference>
    <dbReference type="GO" id="GO:0006281">
        <property type="term" value="P:DNA repair"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd01025">
        <property type="entry name" value="TOPRIM_recR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00017">
        <property type="entry name" value="RecR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000093">
        <property type="entry name" value="DNA_Rcmb_RecR"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023627">
        <property type="entry name" value="Rcmb_RecR"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023628">
        <property type="entry name" value="Rcmb_RecR_C4-type_Zn"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015967">
        <property type="entry name" value="Rcmb_RecR_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006171">
        <property type="entry name" value="TOPRIM_domain"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR034137">
        <property type="entry name" value="TOPRIM_RecR"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30446">
        <property type="entry name" value="PTHR30446"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02132">
        <property type="entry name" value="RecR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13662">
        <property type="entry name" value="Toprim_4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00493">
        <property type="entry name" value="TOPRIM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF111304">
        <property type="entry name" value="SSF111304"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00615">
        <property type="entry name" value="recR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01300">
        <property type="entry name" value="RECR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50880">
        <property type="entry name" value="TOPRIM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2 7" id="KW-0227">DNA damage</keyword>
    <keyword evidence="5 7" id="KW-0233">DNA recombination</keyword>
    <keyword evidence="6 7" id="KW-0234">DNA repair</keyword>
    <keyword evidence="1 7" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4 7" id="KW-0862">Zinc</keyword>
    <keyword evidence="3 7" id="KW-0863">Zinc-finger</keyword>
    <feature type="domain" description="Toprim" evidence="8">
        <location>
            <begin position="80"/>
            <end position="175"/>
        </location>
    </feature>
    <feature type="zinc finger region" description="C4-type" evidence="7">
        <location>
            <begin position="57"/>
            <end position="72"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022763"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022771"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022833"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023172"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023204"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00017"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="PROSITE" id="PS50880"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="ABX37530.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="196" mass="21219" checksum="A2B8A8D20B1EDEAC" modified="2008-01-15" version="1">MSDVQSLDGLIEALRRLPGVGIKSAQRMAFHLLQRDQDGARQLARALTTAVESVTHCERCHTFTEGRICSICQDEGRDAARLCVVEAPADMAAMERTGAYQGYYYVLMGRLSPLDGIGPRDLNLSSLLERAGDGKVQEVILATSFTAEGEATAHAISEALKARGIHVTRLARGVPIGSELEYVDLGTIAHALVDRR</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="79" xmlns="http://uniprot.org/uniprot">
    <accession>A9BN98</accession>
    <name>A9BN98_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="8">ABC transporter related</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="8" type="ordered locus">Daci_5164</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="9" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX37793.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012206963.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_5164"/>
    <dbReference type="PRIDE" id="A9BN98"/>
    <dbReference type="EnsemblBacteria" id="ABX37793">
        <property type="protein sequence ID" value="ABX37793"/>
        <property type="gene ID" value="Daci_5164"/>
    </dbReference>
    <dbReference type="GeneID" id="60689514"/>
    <dbReference type="KEGG" id="dac:Daci_5164"/>
    <dbReference type="eggNOG" id="COG0411">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_000604_1_2_4"/>
    <dbReference type="OMA" id="ICGFDVQ"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003593">
        <property type="entry name" value="AAA+_ATPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003439">
        <property type="entry name" value="ABC_transporter-like_ATP-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR032823">
        <property type="entry name" value="BCA_ABC_TP_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00005">
        <property type="entry name" value="ABC_tran"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12399">
        <property type="entry name" value="BCA_ABC_TP_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00382">
        <property type="entry name" value="AAA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50893">
        <property type="entry name" value="ABC_TRANSPORTER_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3 6" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="1" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="5" id="KW-0472">Membrane</keyword>
    <keyword evidence="2 6" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4" id="KW-1278">Translocase</keyword>
    <feature type="domain" description="ABC transporter" evidence="7">
        <location>
            <begin position="6"/>
            <end position="247"/>
        </location>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <begin position="38"/>
            <end position="45"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022967"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00434"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="PROSITE" id="PS50893"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="ABX37793.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="256" mass="28390" checksum="21D97876D73C5B94" modified="2008-01-15" version="1">MSDVILETRNLTKEFKGFTAVSKVDLSVRRGSIHALIGPNGAGKTTCFNLLTKFLEPTSGTIRFNGEDITREAPAQIARRGVIRSFQISAVFPHCTLLENVRIGLQRKLGTEFHFWRSEKSLSQLDDRAMQLLAEVGLQDLADEVTVNLPYGRKRALEIATTLAMEPELMLLDEPTQGMGHEDVDRVTQLIKKVSAGRTILMVEHNMKVISTIADRITVLQRGAVLAEGPYEEVSRNPQVMEAYMGTTDGQLQGAH</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="64" xmlns="http://uniprot.org/uniprot">
    <accession>A9BNX5</accession>
    <name>A9BNX5_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Short-chain dehydrogenase/reductase SDR</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Daci_5391</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="2" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX38020.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012207189.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_5391"/>
    <dbReference type="PRIDE" id="A9BNX5"/>
    <dbReference type="EnsemblBacteria" id="ABX38020">
        <property type="protein sequence ID" value="ABX38020"/>
        <property type="gene ID" value="Daci_5391"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_5391"/>
    <dbReference type="eggNOG" id="COG1028">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_010194_1_2_4"/>
    <dbReference type="OMA" id="DNTDEQW"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036291">
        <property type="entry name" value="NAD(P)-bd_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002347">
        <property type="entry name" value="SDR_fam"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00081">
        <property type="entry name" value="GDHRDH"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51735">
        <property type="entry name" value="SSF51735"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ABX38020.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="265" mass="27025" checksum="ADE742F218E3CA0F" modified="2008-01-15" version="1">MDLGIAGKWALVCGASKGLGFGCAKALAQEGVNLVINARNPEALQEAAASLAALAPQVKVLAVAADITTEEGRAAVLSAAGGPGVDFDIVVTNAGGPPPGDFRDWDRAAWLKAVDANMLTPIELIKATVDGMAARGFGRIVNITSSAVKAPIDILGLSNGARSGLTGFVAGLARSGIAAKGVTINNLLPGKFDTDRLRTTFTAAANKSGKSLDDVRLVQQSQVPARRFGSPDEFGAICAFLCSAHAGYMTGQNILPDGGLYAGTF</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="48" xmlns="http://uniprot.org/uniprot">
    <accession>A9BP38</accession>
    <name>A9BP38_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_5454</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX38083.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012207252.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_5454"/>
    <dbReference type="PRIDE" id="A9BP38"/>
    <dbReference type="EnsemblBacteria" id="ABX38083">
        <property type="protein sequence ID" value="ABX38083"/>
        <property type="gene ID" value="Daci_5454"/>
    </dbReference>
    <dbReference type="GeneID" id="60689805"/>
    <dbReference type="KEGG" id="dac:Daci_5454"/>
    <dbReference type="eggNOG" id="COG2928">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_068050_1_1_4"/>
    <dbReference type="OMA" id="PTTGWYT"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007462">
        <property type="entry name" value="COV1-like"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR31876">
        <property type="entry name" value="PTHR31876"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04367">
        <property type="entry name" value="DUF502"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="7"/>
            <end position="29"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="49"/>
            <end position="72"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX38083.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="207" mass="22383" checksum="2A1329217583241F" modified="2008-01-15" version="1">MSALRKWLFAGLLVIVPLVITLGVLNWIIGTLDQTLAILPEAWHPDRLLGFHIPGFGVVLTLLILLVVGAAASNFIGRKLVSWGDAVVSRIPVVRSIYSSVKQVSDTVFSDSGNAFRTAVLVQWPREGVWTVAFVTGSPSGEVAAYLRDEYLSVFVPTTPNPTGGYFVIVRKSDCIELEMSVDAALKYIVSMGVVTPPDLTLPAESK</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="103" xmlns="http://uniprot.org/uniprot">
    <accession>A9BP86</accession>
    <name>A9BP86_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="5 12">DNA gyrase subunit B</fullName>
            <ecNumber evidence="4 12">5.6.2.2</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="12" type="primary">gyrB</name>
        <name evidence="15" type="ordered locus">Daci_0003</name>
    </gene>
    <organism evidence="15 16">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="15 16" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="16">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="16" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="16">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="12">A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1 12">
            <text>ATP-dependent breakage, passage and rejoining of double-stranded DNA.</text>
            <dbReference type="EC" id="5.6.2.2"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="2">
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </cofactor>
    </comment>
    <comment type="subunit">
        <text evidence="12">Heterotetramer, composed of two GyrA and two GyrB chains. In the heterotetramer, GyrA contains the active site tyrosine that forms a transient covalent intermediate with DNA, while GyrB binds cofactors and catalyzes ATP hydrolysis.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="12">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="miscellaneous">
        <text evidence="12">Few gyrases are as efficient as E.coli at forming negative supercoils. Not all organisms have 2 type II topoisomerases; in organisms with a single type II topoisomerase this enzyme also has to decatenate newly replicated chromosomes.</text>
    </comment>
    <comment type="similarity">
        <text evidence="3">Belongs to the type II topoisomerase GyrB family.</text>
    </comment>
    <comment type="similarity">
        <text evidence="12">Belongs to the type II topoisomerase family.</text>
    </comment>
    <dbReference type="EC" id="5.6.2.2" evidence="4 12"/>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX32650.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012201943.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_0003"/>
    <dbReference type="PRIDE" id="A9BP86"/>
    <dbReference type="EnsemblBacteria" id="ABX32650">
        <property type="protein sequence ID" value="ABX32650"/>
        <property type="gene ID" value="Daci_0003"/>
    </dbReference>
    <dbReference type="GeneID" id="60690421"/>
    <dbReference type="KEGG" id="dac:Daci_0003"/>
    <dbReference type="eggNOG" id="COG0187">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_006146_4_1_4"/>
    <dbReference type="OMA" id="LWETTMH"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005694">
        <property type="term" value="C:chromosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003918">
        <property type="term" value="F:DNA topoisomerase type II (double strand cut, ATP-hydrolyzing) activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006265">
        <property type="term" value="P:DNA topological change"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006261">
        <property type="term" value="P:DNA-templated DNA replication"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd03366">
        <property type="entry name" value="TOPRIM_TopoIIA_GyrB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.230.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.565.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.670">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01898">
        <property type="entry name" value="GyrB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002288">
        <property type="entry name" value="DNA_gyrase_B_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011557">
        <property type="entry name" value="GyrB"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041423">
        <property type="entry name" value="GyrB_insert"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003594">
        <property type="entry name" value="HATPase_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036890">
        <property type="entry name" value="HATPase_C_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020568">
        <property type="entry name" value="Ribosomal_S5_D2-typ_fold"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014721">
        <property type="entry name" value="Ribosomal_S5_D2-typ_fold_subgr"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001241">
        <property type="entry name" value="Topo_IIA"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013760">
        <property type="entry name" value="Topo_IIA-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013759">
        <property type="entry name" value="Topo_IIA_B_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013506">
        <property type="entry name" value="Topo_IIA_bsu_dom2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018522">
        <property type="entry name" value="TopoIIA_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006171">
        <property type="entry name" value="TOPRIM_domain"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR034160">
        <property type="entry name" value="TOPRIM_GyrB"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00204">
        <property type="entry name" value="DNA_gyraseB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00986">
        <property type="entry name" value="DNA_gyraseB_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF18053">
        <property type="entry name" value="GyrB_insert"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02518">
        <property type="entry name" value="HATPase_c"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01751">
        <property type="entry name" value="Toprim"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00387">
        <property type="entry name" value="HATPase_c"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00433">
        <property type="entry name" value="TOP2c"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54211">
        <property type="entry name" value="SSF54211"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55874">
        <property type="entry name" value="SSF55874"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56719">
        <property type="entry name" value="SSF56719"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01059">
        <property type="entry name" value="gyrB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00177">
        <property type="entry name" value="TOPOISOMERASE_II"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50880">
        <property type="entry name" value="TOPRIM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="8 12" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="12" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="11 12" id="KW-0413">Isomerase</keyword>
    <keyword evidence="9" id="KW-0460">Magnesium</keyword>
    <keyword evidence="6" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="7 12" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="16" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="10 12" id="KW-0799">Topoisomerase</keyword>
    <feature type="domain" description="Toprim" evidence="14">
        <location>
            <begin position="461"/>
            <end position="586"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="13">
        <location>
            <begin position="1"/>
            <end position="23"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="13">
        <location>
            <begin position="1"/>
            <end position="17"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00000185"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00001946"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00010708"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00012895"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00019166"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00022842"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00023029"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="ARBA" id="ARBA00023235"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="12">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01898"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="13">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="14">
        <source>
            <dbReference type="PROSITE" id="PS50880"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="15">
        <source>
            <dbReference type="EMBL" id="ABX32650.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="16">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="859" mass="94435" checksum="09F84AC63921E081" modified="2008-01-15" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="72" xmlns="http://uniprot.org/uniprot">
    <accession>A9BPW5</accession>
    <name>A9BPW5_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="4">P-type conjugative transfer ATPase TrbB</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ordered locus">Daci_0438</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="5" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the GSP E family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX33084.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012202374.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_0438"/>
    <dbReference type="PRIDE" id="A9BPW5"/>
    <dbReference type="EnsemblBacteria" id="ABX33084">
        <property type="protein sequence ID" value="ABX33084"/>
        <property type="gene ID" value="Daci_0438"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_0438"/>
    <dbReference type="eggNOG" id="COG4962">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_005379_3_0_4"/>
    <dbReference type="OMA" id="VYLEVTK"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014149">
        <property type="entry name" value="Conjug-transfer_TrbB"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001482">
        <property type="entry name" value="T2SS/T4SS"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00437">
        <property type="entry name" value="T2SSE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR02782">
        <property type="entry name" value="TrbB_P"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="T2SP_E" evidence="3">
        <location>
            <begin position="29"/>
            <end position="290"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="327"/>
            <end position="353"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="2">
        <location>
            <begin position="337"/>
            <end position="353"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00006611"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF00437"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="ABX33084.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="353" mass="37470" checksum="2921D0C94B47FFED" modified="2008-01-15" version="1">MSAAPSSLTTSLDRRIQMLRTAMGPLIAAALEDPDVVEVMLNPDRTLWVDRLSSGRAPMGAELPETDGERIIRLVAAHVGAEVHRGQPLLSAELPETGERFEGILPPAAPGPAFALRKRAIGVIPLSRYIEDGMMTAEQAGFLVRAVRERQNVLIAGATSSGKTTLANALLAEIAATGDRVLVLEDTIELQCAARDHVPLRTRAGVVSMTELVRSSMRLRPDRVVVGEVRGAEALDLIKVWGTGHPGGIATIHAGSALGALLRLEQLILEVAVNPPRALIAEAVNVVIHIAGRGRKRRIESIARVVGFDGVGYRLADWEADALDTPFPELSPNPDAVPAAATSSSLDSLGELP</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="77" xmlns="http://uniprot.org/uniprot">
    <accession>A9BQ26</accession>
    <name>A9BQ26_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Transcriptional regulator, GntR family with aminotransferase domain</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Daci_0595</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="4" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">In the C-terminal section; belongs to the class-I pyridoxal-phosphate-dependent aminotransferase family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX33241.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012202527.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_0595"/>
    <dbReference type="PRIDE" id="A9BQ26"/>
    <dbReference type="EnsemblBacteria" id="ABX33241">
        <property type="protein sequence ID" value="ABX33241"/>
        <property type="gene ID" value="Daci_0595"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_0595"/>
    <dbReference type="eggNOG" id="COG1167">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_017584_0_0_4"/>
    <dbReference type="OMA" id="LIRGMFH"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003700">
        <property type="term" value="F:DNA-binding transcription factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030170">
        <property type="term" value="F:pyridoxal phosphate binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008483">
        <property type="term" value="F:transaminase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009058">
        <property type="term" value="P:biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd07377">
        <property type="entry name" value="WHTH_GntR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.640.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.1150.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004839">
        <property type="entry name" value="Aminotransferase_I/II"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015424">
        <property type="entry name" value="PyrdxlP-dep_Trfase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015421">
        <property type="entry name" value="PyrdxlP-dep_Trfase_major"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015422">
        <property type="entry name" value="PyrdxlP-dep_Trfase_small"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000524">
        <property type="entry name" value="Tscrpt_reg_HTH_GntR"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036390">
        <property type="entry name" value="WH_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00155">
        <property type="entry name" value="Aminotran_1_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00392">
        <property type="entry name" value="GntR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00345">
        <property type="entry name" value="HTH_GNTR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46785">
        <property type="entry name" value="SSF46785"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53383">
        <property type="entry name" value="SSF53383"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50949">
        <property type="entry name" value="HTH_GNTR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-0032">Aminotransferase</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="HTH gntR-type" evidence="2">
        <location>
            <begin position="11"/>
            <end position="79"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00005384"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS50949"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ABX33241.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="483" mass="52372" checksum="BAF3F678B7E92E64" modified="2008-01-15" version="1">MTVPLSRLAPQTLSTQLAERLGERIRMRLLPAGARLPSVRECARQQGVSTHTVVAAYDLLQAQGLVEARPQSGFFVRDFVQDAPLLQPEQARAAPAEEAPGVPKGTRINASMLVRGMFHQSVGGRPQPGAGVLPAEWLEAGFLAAAMRKACSGKSLHDSCVGYGDPLGDIGLREALSRRLARLGIAAAPQHIITTMGATHGLDVVSRALLQPGDPVMVEEPGWAVEFARLASLGMRVLPVPRGPDGPDLAVMQRYCESCAPKLYVSVSVLHNPTGYSLSPASAHEVLQLARRFGFYVVEDDTYGEIAPDHAARMTVLDRLSHSIYVSGFAKLLAPNWRVGYLAPPPALVERLVDTKLLSTLTTPSLMERALAHCMDQGQLRRHAERLRQHLAQARMRSVALAQQAGARFAAEPAGMFGWVDTGVDTETLAQRLLDAGYFIAPGAMFHAGRQPSTCMRINFATTQEPAFWRIFEREVQAMRGSG</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="73" xmlns="http://uniprot.org/uniprot">
    <accession>A9BQ45</accession>
    <name>A9BQ45_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Beta-ketoacyl-acyl-carrier-protein synthase I</fullName>
            <ecNumber evidence="4">2.3.1.41</ecNumber>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ordered locus">Daci_0614</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="5" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EC" id="2.3.1.41" evidence="4"/>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX33260.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012202546.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_0614"/>
    <dbReference type="PRIDE" id="A9BQ45"/>
    <dbReference type="EnsemblBacteria" id="ABX33260">
        <property type="protein sequence ID" value="ABX33260"/>
        <property type="gene ID" value="Daci_0614"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_0614"/>
    <dbReference type="eggNOG" id="COG0332">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_039592_1_0_4"/>
    <dbReference type="OMA" id="SCVLQHR"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004315">
        <property type="term" value="F:3-oxoacyl-[acyl-carrier-protein] synthase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006633">
        <property type="term" value="P:fatty acid biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.47.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013751">
        <property type="entry name" value="ACP_syn_III"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013747">
        <property type="entry name" value="ACP_syn_III_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016039">
        <property type="entry name" value="Thiolase-like"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08545">
        <property type="entry name" value="ACP_syn_III"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08541">
        <property type="entry name" value="ACP_syn_III_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53901">
        <property type="entry name" value="SSF53901"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1 4" id="KW-0012">Acyltransferase</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="ACP_syn_III" evidence="3">
        <location>
            <begin position="114"/>
            <end position="184"/>
        </location>
    </feature>
    <feature type="domain" description="ACP_syn_III_C" evidence="2">
        <location>
            <begin position="245"/>
            <end position="333"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023315"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF08541"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF08545"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="ABX33260.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="345" mass="37443" checksum="6E739B54FB5E0F95" modified="2008-01-15" version="1">MALSTLHNVRFAGMASCVPKRLVSNLEDCPPSQRSERERLVRNIGIQTRRLCSEWQCFSDLALAAAEKLLEDLQWQREEIDALIVVTQSPDYLIPATAIIMQDRLGLPHTTIAFDVNLGCSGYPFGLHLLSSMISAGGIKKGLVLVGDKSGSVKDPLFSDAGTATALEFSPGAAPMHFDLNSDGSGYRAIMLPAGGHREPFGVEHLMATRDQHGVLRSPMDLILDGPAVLSFSTQRIPPSVEKLLEHTGTSKDSIDHFIFHQANRMINETIRKKLGLPAEKVPSTLHDFGNTSGASLPVTVTARLHEQLDGARARLLLCGFGIGLSWGTAIVDIESARFPAMVEQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="61" xmlns="http://uniprot.org/uniprot">
    <accession>A9BQ66</accession>
    <name>A9BQ66_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">Negative regulator of flagellin synthesis</fullName>
        </recommendedName>
        <alternativeName>
            <fullName evidence="8">Anti-sigma-28 factor</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="11" type="ordered locus">Daci_0635</name>
    </gene>
    <organism evidence="11 12">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="11 12" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="12">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="12" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="12">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="7">Responsible for the coupling of flagellin expression to flagellar assembly by preventing expression of the flagellin genes when a component of the middle class of proteins is defective. It negatively regulates flagellar genes by inhibiting the activity of FliA by directly binding to FliA.</text>
    </comment>
    <comment type="similarity">
        <text evidence="1">Belongs to the FlgM family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX33281.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012202567.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_0635"/>
    <dbReference type="PRIDE" id="A9BQ66"/>
    <dbReference type="EnsemblBacteria" id="ABX33281">
        <property type="protein sequence ID" value="ABX33281"/>
        <property type="gene ID" value="Daci_0635"/>
    </dbReference>
    <dbReference type="GeneID" id="60690976"/>
    <dbReference type="KEGG" id="dac:Daci_0635"/>
    <dbReference type="eggNOG" id="COG2747">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_168124_0_0_4"/>
    <dbReference type="OMA" id="KMLANAQ"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0044781">
        <property type="term" value="P:bacterial-type flagellum organization"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0045892">
        <property type="term" value="P:negative regulation of transcription, DNA-templated"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035890">
        <property type="entry name" value="Anti-sigma-28_factor_FlgM_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007412">
        <property type="entry name" value="FlgM"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR031316">
        <property type="entry name" value="FlgM_C"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04316">
        <property type="entry name" value="FlgM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF101498">
        <property type="entry name" value="SSF101498"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR03824">
        <property type="entry name" value="FlgM_jcvi"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-1005">Bacterial flagellum biogenesis</keyword>
    <keyword evidence="12" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0678">Repressor</keyword>
    <keyword evidence="6" id="KW-0804">Transcription</keyword>
    <keyword evidence="5" id="KW-0805">Transcription regulation</keyword>
    <feature type="domain" description="FlgM" evidence="10">
        <location>
            <begin position="46"/>
            <end position="94"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="9">
        <location>
            <begin position="1"/>
            <end position="42"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="9">
        <location>
            <begin position="18"/>
            <end position="36"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00005322"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00017823"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022491"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022795"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023015"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023163"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00024739"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00030117"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="10">
        <source>
            <dbReference type="Pfam" id="PF04316"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="EMBL" id="ABX33281.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="106" mass="11011" checksum="1FF431A71CBC434F" modified="2008-01-15" version="1">MKIGQKPELPAAASQAAAKQPKTASTIATEESSAQAQPAKAAGVPVSFSTSARALDQSGRATADFDANRVKEIREAIANGTFRVNADAVADKLLANSEEFLSHSRV</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="58" xmlns="http://uniprot.org/uniprot">
    <accession>A9BQE7</accession>
    <name>A9BQE7_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ordered locus">Daci_0911</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="5" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Periplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the UPF0065 (bug) family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX33557.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012202843.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_0911"/>
    <dbReference type="PRIDE" id="A9BQE7"/>
    <dbReference type="EnsemblBacteria" id="ABX33557">
        <property type="protein sequence ID" value="ABX33557"/>
        <property type="gene ID" value="Daci_0911"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_0911"/>
    <dbReference type="eggNOG" id="COG3181">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_045683_0_1_4"/>
    <dbReference type="OMA" id="DVFARQM"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0042597">
        <property type="term" value="C:periplasmic space"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.190.150">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005064">
        <property type="entry name" value="BUG"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR042100">
        <property type="entry name" value="Bug_dom1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006311">
        <property type="entry name" value="TAT_signal"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR42928">
        <property type="entry name" value="PTHR42928"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03401">
        <property type="entry name" value="TctC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF017082">
        <property type="entry name" value="YflP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51318">
        <property type="entry name" value="TAT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="3">
        <location>
            <begin position="1"/>
            <end position="39"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5002732415" evidence="3">
        <location>
            <begin position="40"/>
            <end position="338"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004418"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00006987"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="ABX33557.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="338" mass="34582" checksum="A9B2388D2B12BCBB" modified="2008-01-15" version="1">MDSRLTSQPAQASQTSLPRRMWLSTAAAALAACALPAWAQKRGSRLVVPFAPGGGNDVFARQMAHGLNESFGYGMIVENKAGAGGNLGTEAVVRAAGDGSTWLLGHTGTVSINPSLYPGLKFNAATDLQPVAMFASSALLLVVPASSPVRSVADLAEQMRKRSGEMNYASSGSGTGGHLTGEMFAHALGAKAIHVPYKGTAPSLTDLVGGNVDFSFGVIPAAMALVKAGKLRALAVTGAKRQPQLPDVPTVAESGVRALADFESSLTYGILAPKGTPAETVRALGRDILKVASAESFQSRLGIEGAVPLLGDGAQYAARIQVESAKWAAVIKASGATA</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2021-06-02" version="63" xmlns="http://uniprot.org/uniprot">
    <accession>A9BQF0</accession>
    <name>A9BQF0_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Protocatechuate 4,5-dioxygenase</fullName>
            <ecNumber evidence="2">1.13.11.8</ecNumber>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_0914</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EC" id="1.13.11.8" evidence="2"/>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX33560.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012202846.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_0914"/>
    <dbReference type="EnsemblBacteria" id="ABX33560">
        <property type="protein sequence ID" value="ABX33560"/>
        <property type="gene ID" value="Daci_0914"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_0914"/>
    <dbReference type="eggNOG" id="COG3384">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_078149_1_0_4"/>
    <dbReference type="OMA" id="VIYNDHG"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008198">
        <property type="term" value="F:ferrous iron binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0018579">
        <property type="term" value="F:protocatechuate 4,5-dioxygenase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006725">
        <property type="term" value="P:cellular aromatic compound metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004183">
        <property type="entry name" value="Xdiol_dOase_suB"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02900">
        <property type="entry name" value="LigB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0223">Dioxygenase</keyword>
    <keyword evidence="2" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="LigB" evidence="1">
        <location>
            <begin position="8"/>
            <end position="271"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF02900"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX33560.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="281" mass="30802" checksum="B5B234D9C103D4DA" modified="2008-01-15" version="1">MAHLIGGLGTSHIPAIGNAIHKGLQNEPYWKPFFDGFPPIREWLAAQRPDVVVMFYNDHGLNFFLDKMPTFAVGAAERYCNADEGWGIPTLAPLRGHTELSWHLIESLVGEDFDVVSCQEMLVDHACTLPLKLFWPEGDCPVAVVPVCINTVQFPLPSARRCHALGQAVGRAIARWNSDQRVAVIASGGLSHQLDGERAGFINKAFDLQFLESMATNPEWATQFSMHELVEKTGTQGVELLMWLAMRGALSAAAPGVRRVHGNYHIPISNTATALLALEAV</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="69" xmlns="http://uniprot.org/uniprot">
    <accession>A9BQH7</accession>
    <name>A9BQH7_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Export-related chaperone CsaA</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ordered locus">Daci_0941</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="6" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX33587.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_0941"/>
    <dbReference type="PRIDE" id="A9BQH7"/>
    <dbReference type="EnsemblBacteria" id="ABX33587">
        <property type="protein sequence ID" value="ABX33587"/>
        <property type="gene ID" value="Daci_0941"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_0941"/>
    <dbReference type="eggNOG" id="COG0073">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_065946_2_1_4"/>
    <dbReference type="OMA" id="FPEARNP"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000049">
        <property type="term" value="F:tRNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.50.140">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008231">
        <property type="entry name" value="CsaA"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012340">
        <property type="entry name" value="NA-bd_OB-fold"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002547">
        <property type="entry name" value="tRNA-bd_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11586:SF37">
        <property type="entry name" value="PTHR11586:SF37"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01588">
        <property type="entry name" value="tRNA_bind"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50249">
        <property type="entry name" value="SSF50249"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR02222">
        <property type="entry name" value="chap_CsaA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50886">
        <property type="entry name" value="TRBD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 3" id="KW-0694">RNA-binding</keyword>
    <keyword evidence="1 3" id="KW-0820">tRNA-binding</keyword>
    <feature type="domain" description="TRNA-binding" evidence="4">
        <location>
            <begin position="15"/>
            <end position="128"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022555"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022884"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00209"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="PROSITE" id="PS50886"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="ABX33587.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="128" mass="14270" checksum="498BC559D7F24797" modified="2008-01-15" version="1">MTTSSALHETIGFDDFLKVELRVGRIVDAQVFKEARRPAYVLQVDFGPALGLRKSSAQITALYRPEELIGRQVVAVLNFPSKQIGPMRSECLVTGFHNEKARWRCACPTARCRWVPSCCDGLGDCWPG</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2021-06-02" version="66" xmlns="http://uniprot.org/uniprot">
    <accession>A9BQI7</accession>
    <name>A9BQI7_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Short-chain dehydrogenase/reductase SDR</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Daci_0042</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="2" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX32689.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_0042"/>
    <dbReference type="EnsemblBacteria" id="ABX32689">
        <property type="protein sequence ID" value="ABX32689"/>
        <property type="gene ID" value="Daci_0042"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_0042"/>
    <dbReference type="eggNOG" id="COG4221">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_010194_2_10_4"/>
    <dbReference type="OMA" id="NWRGQFA"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016491">
        <property type="term" value="F:oxidoreductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036291">
        <property type="entry name" value="NAD(P)-bd_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020904">
        <property type="entry name" value="Sc_DH/Rdtase_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002347">
        <property type="entry name" value="SDR_fam"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00081">
        <property type="entry name" value="GDHRDH"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00080">
        <property type="entry name" value="SDRFAMILY"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51735">
        <property type="entry name" value="SSF51735"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00061">
        <property type="entry name" value="ADH_SHORT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ABX32689.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="251" mass="26271" checksum="A701023C72E876ED" modified="2008-01-15" version="1">MMQLSHPPLQDRIAVVTGASSGIGAATARALAREGATVVIGYHQGRDRAQALREELPGSHHTLQLSLQDEASHATAAQWLQQHLGRVDLLVNCAGFTERIAHAQIDALEPALFNRILCANVGGTYAVTRALLPLLRASQDAAVVNVSSVSAFTGLGSNMAYCAAKAALDTLTVSMARAFGPVRFLCVSPAAVDTGFVEGRSRQELEKKAAHTPLGRVVEPGDVAQAILACATHLRTATGTRIVIDGGHSLG</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="67" xmlns="http://uniprot.org/uniprot">
    <accession>A9BQN9</accession>
    <name>A9BQN9_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="7">Amino acid permease-associated region</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ordered locus">Daci_0094</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="8" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX32741.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="PRIDE" id="A9BQN9"/>
    <dbReference type="EnsemblBacteria" id="ABX32741">
        <property type="protein sequence ID" value="ABX32741"/>
        <property type="gene ID" value="Daci_0094"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_0094"/>
    <dbReference type="eggNOG" id="COG1113">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_007946_9_1_4"/>
    <dbReference type="OMA" id="VVLIQYW"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0055085">
        <property type="term" value="P:transmembrane transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004841">
        <property type="entry name" value="AA-permease/SLC12A_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00324">
        <property type="entry name" value="AA_permease"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4 5" id="KW-0472">Membrane</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 5" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="3 5" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="12"/>
            <end position="32"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="44"/>
            <end position="66"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="86"/>
            <end position="109"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="130"/>
            <end position="150"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="162"/>
            <end position="187"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="221"/>
            <end position="241"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="247"/>
            <end position="266"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="287"/>
            <end position="310"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="316"/>
            <end position="335"/>
        </location>
    </feature>
    <feature type="domain" description="AA_permease" evidence="6">
        <location>
            <begin position="1"/>
            <end position="337"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="Pfam" id="PF00324"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="ABX32741.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="353" mass="37596" checksum="3AAEE81FB4A88E85" modified="2008-01-15" version="1">MGFWFPEVPRWIWVLSIVCFIGALNLCSVKVFGEMEFWLSLLKVAAIIAMIGGGLGIMVFGFGMAADQAPTGVQNLWVHGGFMPHGVSGLIASLAVVVFAFGGIEIIGISAGEAKDPARVIPRAINAVPLRILLFYVLTLFVLMSIFPWPQIGSQGSPFVQIFSGLGISSAATILNIVVISAAVSAINSDIFGAGRMLYGMAHQGQAPAGFGRVSRHGVPWMTVVVMAVALLAGVVLNYLIPEDVFLLIASIATFATVWVWLMILLSQFAARRRMSPQQVAALKFPVPLWPAAPLAAIAFMLLVLGVLGYFPHTRAALVVGGLWIVLLGAAYLLWVRPAAARAQSEAMLPAAE</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="59" xmlns="http://uniprot.org/uniprot">
    <accession>A9BR04</accession>
    <name>A9BR04_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">FAD-binding 9 siderophore-interacting domain protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_0313</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX32959.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012202252.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_0313"/>
    <dbReference type="PRIDE" id="A9BR04"/>
    <dbReference type="EnsemblBacteria" id="ABX32959">
        <property type="protein sequence ID" value="ABX32959"/>
        <property type="gene ID" value="Daci_0313"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_0313"/>
    <dbReference type="eggNOG" id="COG2375">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_040923_4_0_4"/>
    <dbReference type="OMA" id="VHAFVHG"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016491">
        <property type="term" value="F:oxidoreductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.80">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013113">
        <property type="entry name" value="FAD-bd_9_SIP"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017927">
        <property type="entry name" value="FAD-bd_FR_type"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR039261">
        <property type="entry name" value="FNR_nucleotide-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017938">
        <property type="entry name" value="Riboflavin_synthase-like_b-brl"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007037">
        <property type="entry name" value="SIP_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR039374">
        <property type="entry name" value="SIP_fam"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30157">
        <property type="entry name" value="PTHR30157"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08021">
        <property type="entry name" value="FAD_binding_9"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04954">
        <property type="entry name" value="SIP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF63380">
        <property type="entry name" value="SSF63380"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51384">
        <property type="entry name" value="FAD_FR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="FAD-binding FR-type" evidence="1">
        <location>
            <begin position="24"/>
            <end position="147"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS51384"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX32959.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="270" mass="29904" checksum="47300487A9EF6439" modified="2008-01-15" version="1">MNLPNPATSAVTPAPVVQRVRHSFRARHVQLLSREQPSPGFVRLTLGGPDLEDFVSAGFDDHVKLILPQAGRELPALPVLLDGRPTFVEDERPTLRDYTPLRYDAARQNLIMDFALHDAGPATEWALTAPLGQWVGLAGPRGSLVISANLPWHWLFGDETAMPAIERRLAELPAGSRAVVRVQLRNPADRRQWSSTARLDCDWVESLADAVQALELPQDDGYIWAAGEHSAMAELRRLLLAKGASPKRMRVASYWKQGTADHHEDLNDPS</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-05-25" version="56" xmlns="http://uniprot.org/uniprot">
    <accession>A9BR42</accession>
    <name>A9BR42_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Putative conjugal transfer TRAF transmembrane protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_0454</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX33100.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012202386.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_0454"/>
    <dbReference type="MEROPS" id="S26.014"/>
    <dbReference type="EnsemblBacteria" id="ABX33100">
        <property type="protein sequence ID" value="ABX33100"/>
        <property type="gene ID" value="Daci_0454"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_0454"/>
    <dbReference type="eggNOG" id="COG4959">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_104604_0_0_4"/>
    <dbReference type="OMA" id="WVINKRE"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004252">
        <property type="term" value="F:serine-type endopeptidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006465">
        <property type="term" value="P:signal peptide processing"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036286">
        <property type="entry name" value="LexA/Signal_pep-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019533">
        <property type="entry name" value="Peptidase_S26"/>
    </dbReference>
    <dbReference type="Pfam" id="PF10502">
        <property type="entry name" value="Peptidase_S26"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51306">
        <property type="entry name" value="SSF51306"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0812">Transmembrane</keyword>
    <feature type="domain" description="Peptidase_S26" evidence="1">
        <location>
            <begin position="20"/>
            <end position="190"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF10502"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX33100.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="195" mass="21069" checksum="9CB8CB5C0A402B64" modified="2008-01-15" version="1">MTAVSTVGTAPRPRSRLRARIVLACLSACGLAALAWASFVHPLPRIIYNPSDSVAVGWYRVEPLHQRTDSLHQPLSVGSIVLTTLPADTAALAAQRRYLPARVPLLKRVGAVAPQTVCVFDALVWIDGVPVAAVLPADRLGRPLPSWRQCRQLRPGELFLLSVTNPASFDSRYFGPVSASAVIGVAHPIWLESRP</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="41" xmlns="http://uniprot.org/uniprot">
    <accession>A9BR50</accession>
    <name>A9BR50_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Daci_0462</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="2" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX33108.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_0462"/>
    <dbReference type="PRIDE" id="A9BR50"/>
    <dbReference type="EnsemblBacteria" id="ABX33108">
        <property type="protein sequence ID" value="ABX33108"/>
        <property type="gene ID" value="Daci_0462"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_0462"/>
    <dbReference type="eggNOG" id="COG5489">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_808271_0_0_4"/>
    <dbReference type="OMA" id="CESWRWH"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007948">
        <property type="entry name" value="DUF736"/>
    </dbReference>
    <dbReference type="Pfam" id="PF05284">
        <property type="entry name" value="DUF736"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ABX33108.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="343" mass="37350" checksum="A6548D35686E8D9B" modified="2008-01-15" version="1">MLRAELRPFGFNPSRLRACACLLRIGARLIPAARCLTPVEYRRTGNAGSAKPAPPPRWAGNWRIRWSLLRQVVRMRAVPDADGSCPSRYEGRFTGIPPGIAMELPCHASRLAPQGVTGAFSPVIGVLTWPASGSEPVQRSCGDAESALSPFEAVRPKASLSCCESWRWHGCASGFMAATVRRKQFPPALRAFLAGQILFASRFSTALRPQAVQPARLPPVGSQQGRDGREPCSIVRRFIMATIGTFTADKDGFTGTLRTLTLNVKAKLVPNDKGDNEHAPDFRVQAAGFDIGAAWKKVSKAERPYVSVTLDDPSFPATVYARLIEEEDGTHTLIWSRSKPQAA</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="83" xmlns="http://uniprot.org/uniprot">
    <accession>A9BRE5</accession>
    <name>A9BRE5_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="8">ATP-binding protein Uup</fullName>
            <ecNumber evidence="8">3.6.1.-</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="8" type="primary">uup</name>
        <name evidence="12" type="ordered locus">Daci_0660</name>
    </gene>
    <organism evidence="12 13">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="12 13" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="13">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="13" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="13">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="8">Probably plays a role in ribosome assembly or function. May be involved in resolution of branched DNA intermediates that result from template switching in postreplication gaps. Binds DNA and has ATPase activity.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="8">
            <text>ATP + H2O = ADP + H(+) + phosphate</text>
            <dbReference type="Rhea" id="RHEA:13065"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:43474"/>
            <dbReference type="ChEBI" id="CHEBI:456216"/>
        </reaction>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="8">Cytoplasm</location>
        </subcellularLocation>
        <text evidence="8">Associates with ribosomes.</text>
    </comment>
    <comment type="similarity">
        <text evidence="8">Belongs to the ABC transporter superfamily. ABCF family. Uup subfamily.</text>
    </comment>
    <dbReference type="EC" id="3.6.1.-" evidence="8"/>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX33306.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012202592.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_0660"/>
    <dbReference type="PRIDE" id="A9BRE5"/>
    <dbReference type="EnsemblBacteria" id="ABX33306">
        <property type="protein sequence ID" value="ABX33306"/>
        <property type="gene ID" value="Daci_0660"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_0660"/>
    <dbReference type="eggNOG" id="COG0488">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_000604_36_0_4"/>
    <dbReference type="OMA" id="AQADKMR"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016887">
        <property type="term" value="F:ATP hydrolysis activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043022">
        <property type="term" value="F:ribosome binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006281">
        <property type="term" value="P:DNA repair"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.287.380">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00848">
        <property type="entry name" value="Uup"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003593">
        <property type="entry name" value="AAA+_ATPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR032524">
        <property type="entry name" value="ABC_tran_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR032781">
        <property type="entry name" value="ABC_tran_Xtn"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003439">
        <property type="entry name" value="ABC_transporter-like_ATP-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017871">
        <property type="entry name" value="ABC_transporter-like_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043686">
        <property type="entry name" value="Uup"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037118">
        <property type="entry name" value="Val-tRNA_synth_C_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00005">
        <property type="entry name" value="ABC_tran"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="Pfam" id="PF16326">
        <property type="entry name" value="ABC_tran_CTD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12848">
        <property type="entry name" value="ABC_tran_Xtn"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00382">
        <property type="entry name" value="AAA"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00211">
        <property type="entry name" value="ABC_TRANSPORTER_1"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50893">
        <property type="entry name" value="ABC_TRANSPORTER_2"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5 8 9" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="1" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="2 8" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="8" id="KW-0227">DNA damage</keyword>
    <keyword evidence="8" id="KW-0234">DNA repair</keyword>
    <keyword evidence="8" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="8" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="7" id="KW-0472">Membrane</keyword>
    <keyword evidence="4 8 9" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="13" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 8" id="KW-0677">Repeat</keyword>
    <keyword evidence="6" id="KW-1278">Translocase</keyword>
    <feature type="domain" description="ABC transporter" evidence="11">
        <location>
            <begin position="4"/>
            <end position="243"/>
        </location>
    </feature>
    <feature type="domain" description="ABC transporter" evidence="11">
        <location>
            <begin position="313"/>
            <end position="529"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="10">
        <location>
            <begin position="525"/>
            <end position="564"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="10">
        <location>
            <begin position="534"/>
            <end position="564"/>
        </location>
    </feature>
    <feature type="binding site" evidence="8 9">
        <location>
            <begin position="36"/>
            <end position="43"/>
        </location>
    </feature>
    <feature type="binding site" evidence="8 9">
        <location>
            <begin position="345"/>
            <end position="352"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022490"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022737"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022967"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00848"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00434"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="11">
        <source>
            <dbReference type="PROSITE" id="PS50893"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="EMBL" id="ABX33306.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="13">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="626" mass="69313" checksum="0D467D633C5FF1E7" modified="2008-01-15" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="53" xmlns="http://uniprot.org/uniprot">
    <accession>A9BRG9</accession>
    <name>A9BRG9_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">PilT protein domain protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_0684</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX33330.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012202616.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_0684"/>
    <dbReference type="PRIDE" id="A9BRG9"/>
    <dbReference type="EnsemblBacteria" id="ABX33330">
        <property type="protein sequence ID" value="ABX33330"/>
        <property type="gene ID" value="Daci_0684"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_0684"/>
    <dbReference type="eggNOG" id="COG1569">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_116617_0_0_4"/>
    <dbReference type="OMA" id="DSNIWVD"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029060">
        <property type="entry name" value="PIN-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002716">
        <property type="entry name" value="PIN_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002850">
        <property type="entry name" value="PIN_toxin-like"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR34610">
        <property type="entry name" value="PTHR34610"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13470">
        <property type="entry name" value="PIN_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF88723">
        <property type="entry name" value="SSF88723"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00305">
        <property type="entry name" value="TIGR00305"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="PINc" evidence="1">
        <location>
            <begin position="22"/>
            <end position="133"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF13470"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX33330.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="162" mass="18097" checksum="883B847928226CA5" modified="2008-01-15" version="1">MKIVLRWPQCNDGYEGPLPRPVVLDTNVVLDMLIFDDPHVPPIRELVEQGQMRWIADQAQRLELERVLHYSQIAPRVAFYGKTVEGVLSAFDGAVEYVADAPRIRFACTDPDDQHFLDLASQHQALLISKDKAVLKLRKRVAGLGATVGNILLAEQEEALAA</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="47" xmlns="http://uniprot.org/uniprot">
    <accession>A9BRJ8</accession>
    <name>A9BRJ8_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Daci_0713</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="2" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX33359.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012202645.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_0713"/>
    <dbReference type="PRIDE" id="A9BRJ8"/>
    <dbReference type="EnsemblBacteria" id="ABX33359">
        <property type="protein sequence ID" value="ABX33359"/>
        <property type="gene ID" value="Daci_0713"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_0713"/>
    <dbReference type="eggNOG" id="COG3185">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_012617_1_1_4"/>
    <dbReference type="OMA" id="KVNVCFE"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010839">
        <property type="entry name" value="AtuA"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07287">
        <property type="entry name" value="AtuA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ABX33359.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="482" mass="50741" checksum="7F96F859FD1D9737" modified="2008-01-15" version="1">MDNLEPSLAPDRPPLWVGCAAGFSGDRTDAAAPVVRALAASGQSACLIFETLAERTLALAQLARREQPDAGYEPLLEDLLEPVLADCLAHGIRIVSNFGAANPEGAARCIQRLAQRLGLRVPRIAVVHGDDVCGPAYREALRAALGAEFPEDSLVSANAYIGARAIAEALQAGAEIVVAGRVSDPSLTLGPAMAHFGWAWDDWDRLARATMAGHLLECGAQVTGGYFADPGFKDVQGLARLGYPIAIIEPSGDCTITKPEGTGGLVSERTVKEQLLYEVHDPAAYLTPDVVADLSEAEVHQVGSDAVRLSGVRGHAHNGHYKVNVCHASGWLAEGEISYAGPRALERARLAGEVLRERLGGEAAGDLRLDWIGVASVLGDDAGRWRDAQPAGAAAPQDVRLRAAWLRPTQAQARRLPREVNALYTCGPAGGGGVRTALRARLGTVSCLLAQQSVATGWKWAEGDVDKGVEKEAGKEAGEHAA</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-05-25" version="74" xmlns="http://uniprot.org/uniprot">
    <accession>A9BRT6</accession>
    <name>A9BRT6_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="8">Transport system permease protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="8" type="ordered locus">Daci_1007</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="9" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX33653.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012202939.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_1007"/>
    <dbReference type="EnsemblBacteria" id="ABX33653">
        <property type="protein sequence ID" value="ABX33653"/>
        <property type="gene ID" value="Daci_1007"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_1007"/>
    <dbReference type="eggNOG" id="COG4605">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_050494_0_0_4"/>
    <dbReference type="OMA" id="LYMLIQT"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0022857">
        <property type="term" value="F:transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.3470.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037294">
        <property type="entry name" value="ABC_BtuC-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000522">
        <property type="entry name" value="ABC_transptr_permease_BtuC"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30472">
        <property type="entry name" value="PTHR30472"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01032">
        <property type="entry name" value="FecCD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF81345">
        <property type="entry name" value="SSF81345"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="6 7" id="KW-0472">Membrane</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4 7" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="5 7" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="20"/>
            <end position="43"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="55"/>
            <end position="74"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="94"/>
            <end position="113"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="120"/>
            <end position="139"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="145"/>
            <end position="168"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="189"/>
            <end position="210"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="240"/>
            <end position="266"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="278"/>
            <end position="300"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="306"/>
            <end position="327"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00007935"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="ABX33653.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="332" mass="35674" checksum="8A0DEBDF2C56AA3B" modified="2008-01-15" version="1">MSSLPQSVASDGPAARSWGHGARLALLGALALLCLLAFMTVGVKTDWAFVLEHRGAKVLTMALVACAIGLSTVVFQTVSHNTILTPSVMGLDALYLFVQASMVLMLGAAGVSAMGEVGRYALNIVLMMGFSVLLMRWLFVGHASSLHLMLLVGMVGGIFFRSLAGLAMRVLDPNEFTALQDRMFANFNAVNLQLLLPSLLLIALGSAWIWRQRRVLDVISLGRDAAVSLGLDYEGRVLRLLAVVACMVAVSTALVGPVIFFGLLVSNMAYHAMGTRRHAWVLPAAVLWGCVLLMGGQVLLEQLFQFNTVLSIVVEFLGGIVFIVLLMRKGTQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="76" xmlns="http://uniprot.org/uniprot">
    <accession>A9BS24</accession>
    <name>A9BS24_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Transcriptional regulator, LysR family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Daci_0788</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="4" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the LysR transcriptional regulatory family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX33434.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_0788"/>
    <dbReference type="PRIDE" id="A9BS24"/>
    <dbReference type="EnsemblBacteria" id="ABX33434">
        <property type="protein sequence ID" value="ABX33434"/>
        <property type="gene ID" value="Daci_0788"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_0788"/>
    <dbReference type="eggNOG" id="COG0583">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_039613_6_1_4"/>
    <dbReference type="OMA" id="LEAFWWA"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003700">
        <property type="term" value="F:DNA-binding transcription factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005119">
        <property type="entry name" value="LysR_subst-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000847">
        <property type="entry name" value="Tscrpt_reg_HTH_LysR"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036390">
        <property type="entry name" value="WH_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00126">
        <property type="entry name" value="HTH_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03466">
        <property type="entry name" value="LysR_substrate"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46785">
        <property type="entry name" value="SSF46785"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50931">
        <property type="entry name" value="HTH_LYSR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HTH lysR-type" evidence="2">
        <location>
            <begin position="22"/>
            <end position="79"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00009437"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS50931"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ABX33434.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="334" mass="35734" checksum="A8F9DDA992D59999" modified="2008-01-15" version="1">MKVDYLECTCSLFANDKPMSTPSVKQLEAFWWAATCSNFATAAQRVHLSVSSLSKRITELESALGQPLFDRSGHRAVLTDAGQRLLPAALEVLNAMAALGQALDMREALAGHCRFGVGDLSALTWLPAFVAAARQAHPQLVLEPHVDVGGVLEQRLDDGELDFAVIAGRSSRSSLLSRPVGAARFAWAVAPGLAGAGRLGATALLQRHALVTLPPQAGTTRLLDDWLLAQGASVRERILCNSWGAVAGMLRAGLGVGFLPTGWITALGLRAVGGAHPKAALAPLHYAFQWRRGDARALIPAMQQLAQAQVDFTVMPGLVGEIQIQRHTHSWRRK</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="67" xmlns="http://uniprot.org/uniprot">
    <accession>A9BS97</accession>
    <name>A9BS97_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Twitching motility protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Daci_1066</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="4" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the GSP E family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX33711.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012202997.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_1066"/>
    <dbReference type="PRIDE" id="A9BS97"/>
    <dbReference type="EnsemblBacteria" id="ABX33711">
        <property type="protein sequence ID" value="ABX33711"/>
        <property type="gene ID" value="Daci_1066"/>
    </dbReference>
    <dbReference type="GeneID" id="60685628"/>
    <dbReference type="KEGG" id="dac:Daci_1066"/>
    <dbReference type="eggNOG" id="COG5008">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_013446_4_0_4"/>
    <dbReference type="OMA" id="QGLCRTT"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006321">
        <property type="entry name" value="PilT/PilU"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001482">
        <property type="entry name" value="T2SS/T4SS"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00437">
        <property type="entry name" value="T2SSE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01420">
        <property type="entry name" value="pilT_fam"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00662">
        <property type="entry name" value="T2SP_E"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="T2SP_E" evidence="2">
        <location>
            <begin position="200"/>
            <end position="214"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00006611"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS00662"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ABX33711.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="378" mass="41978" checksum="F9C1383ADEA3C02F" modified="2008-01-15" version="1">MERDQATKFINDLLKLMVSRNGSDLFITAEFPPAIKIDGRITKVSPQPLSPVHTLTLARSVMSDKQIADFERTKECNFAISPPGIGRFRVNAFIQQGRVGMVMRTIPLALPTIDSLGVPQVLKEVAMTKRGLCILVGATGSGKSTTLAAMVDWRNESSYGHIVTIEDPIEFVHPHKNCVVTQREVGLDTDSWDAALKNSLRQAPDVILMGEIRDRETMEHAIAFSETGHLCLATLHANSANQALDRIVNFFPEDRRPQLLMDLSLNLRAMVSQRLLPKQDSKGRVAAIEVMLNSPLISDLIFKGEVTEIKEIMKKSRNLGMQTFDQALFDLFESNLVTYEDALRNADSVNDLRLQIKLGSQRAKSLDLAAGTEHFAIV</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="61" xmlns="http://uniprot.org/uniprot">
    <accession>A9BSF7</accession>
    <name>A9BSF7_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Fumarylacetoacetate (FAA) hydrolase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Daci_1126</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="4" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX33771.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012203057.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_1126"/>
    <dbReference type="PRIDE" id="A9BSF7"/>
    <dbReference type="EnsemblBacteria" id="ABX33771">
        <property type="protein sequence ID" value="ABX33771"/>
        <property type="gene ID" value="Daci_1126"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_1126"/>
    <dbReference type="eggNOG" id="COG0179">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_050185_0_0_4"/>
    <dbReference type="OMA" id="QLIAHIC"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016787">
        <property type="term" value="F:hydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.850.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041072">
        <property type="entry name" value="FAA_hydro_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011234">
        <property type="entry name" value="Fumarylacetoacetase-like_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036663">
        <property type="entry name" value="Fumarylacetoacetase_C_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF18288">
        <property type="entry name" value="FAA_hydro_N_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01557">
        <property type="entry name" value="FAA_hydrolase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56529">
        <property type="entry name" value="SSF56529"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="FAA_hydro_N_2" evidence="2">
        <location>
            <begin position="1"/>
            <end position="78"/>
        </location>
    </feature>
    <feature type="domain" description="FAA_hydrolase" evidence="1">
        <location>
            <begin position="87"/>
            <end position="335"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF01557"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF18288"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ABX33771.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="340" mass="37171" checksum="523942F7CB1D3940" modified="2008-01-15" version="1">MKLATYKDGSRDGQLVVVSRDLSQAHYATGIASRLQQVLDDWSYMAPQLQDLYHLLNSGKAVHAFAFDPRQCMAPLPRAYQWADGSAYINHVELVRQARGAEVPANFYTDPLMYQGGSDDFLGPCDDVVVPSESMGIDFEAEIAVITADVPMGATPERALGGVRLVMLANDVSLRNLIPNELSKGFGFFQSKPATSFSPVAVTLDELGDAWKGGRLHLTLQSIWNGRKVGMCDAGEDMSFHFGQLIAHICKTRNVRAGSIVGSGTVSNKGVESGKGKNRRMEWPKGYSCIAEKRCIETIQDGAPKTEFMRFGDTIRIEMKGKDGQSIFGAIDQNIVEPAE</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="96" xmlns="http://uniprot.org/uniprot">
    <accession>A9BSH5</accession>
    <name>A9BSH5_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="5">Sensor protein QseC</fullName>
            <ecNumber evidence="4">2.7.13.3</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="15" type="ordered locus">Daci_1144</name>
    </gene>
    <organism evidence="15 16">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="15 16" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="16">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="16" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="16">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>ATP + protein L-histidine = ADP + protein N-phospho-L-histidine.</text>
            <dbReference type="EC" id="2.7.13.3"/>
        </reaction>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="3">Cell inner membrane</location>
            <topology evidence="3">Multi-pass membrane protein</topology>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="2">Membrane</location>
            <topology evidence="2">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <dbReference type="EC" id="2.7.13.3" evidence="4"/>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX33789.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012203075.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_1144"/>
    <dbReference type="PRIDE" id="A9BSH5"/>
    <dbReference type="EnsemblBacteria" id="ABX33789">
        <property type="protein sequence ID" value="ABX33789"/>
        <property type="gene ID" value="Daci_1144"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_1144"/>
    <dbReference type="eggNOG" id="COG0642">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_000445_89_37_4"/>
    <dbReference type="OMA" id="EVSHRMF"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000155">
        <property type="term" value="F:phosphorelay sensor kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd00082">
        <property type="entry name" value="HisKA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.565.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013727">
        <property type="entry name" value="2CSK_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003660">
        <property type="entry name" value="HAMP_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003594">
        <property type="entry name" value="HATPase_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036890">
        <property type="entry name" value="HATPase_C_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005467">
        <property type="entry name" value="His_kinase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003661">
        <property type="entry name" value="HisK_dim/P"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036097">
        <property type="entry name" value="HisK_dim/P_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004358">
        <property type="entry name" value="Sig_transdc_His_kin-like_C"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08521">
        <property type="entry name" value="2CSK_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02518">
        <property type="entry name" value="HATPase_c"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00512">
        <property type="entry name" value="HisKA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00344">
        <property type="entry name" value="BCTRLSENSOR"/>
    </dbReference>
    <dbReference type="SMART" id="SM00387">
        <property type="entry name" value="HATPase_c"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00388">
        <property type="entry name" value="HisKA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47384">
        <property type="entry name" value="SSF47384"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55874">
        <property type="entry name" value="SSF55874"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50885">
        <property type="entry name" value="HAMP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50109">
        <property type="entry name" value="HIS_KIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="9 15" id="KW-0418">Kinase</keyword>
    <keyword evidence="11 12" id="KW-0472">Membrane</keyword>
    <keyword evidence="6" id="KW-0597">Phosphoprotein</keyword>
    <keyword evidence="16" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="7" id="KW-0808">Transferase</keyword>
    <keyword evidence="8 12" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="10 12" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="12">
        <location>
            <begin position="23"/>
            <end position="42"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="12">
        <location>
            <begin position="161"/>
            <end position="181"/>
        </location>
    </feature>
    <feature type="domain" description="HAMP" evidence="14">
        <location>
            <begin position="186"/>
            <end position="238"/>
        </location>
    </feature>
    <feature type="domain" description="Histidine kinase" evidence="13">
        <location>
            <begin position="246"/>
            <end position="466"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00000085"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00004429"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00012438"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00017234"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022553"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00022777"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="12">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="13">
        <source>
            <dbReference type="PROSITE" id="PS50109"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="14">
        <source>
            <dbReference type="PROSITE" id="PS50885"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="15">
        <source>
            <dbReference type="EMBL" id="ABX33789.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="16">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="475" mass="52381" checksum="0EFD60ABD0E0ECAE" modified="2008-01-15" version="1">MAEGRREKPGLPPRLADQLARDLTLALAAVWLACVLALAWYVSHIVHRNFDQEMIDSAHRMLEVAVHQLEQQDHSVEGLPLPHVALEPGNGAESLVYQLQDRHGNVLLRTQAAPVVAFPVPMRDGFYEREGWRMYVVAHPRLPLFLVLADPLAERSEALQRALLALVLVMLAMLTLMGWVLRATARRRLRVLLDMQLQLSERGGANLEPLDLDAMPRELWRLGRGINHLMQRLSHAVQVERSMAANAAHELRTPLAVATLRLQTALDRGVDNTDVRAAYEALERLRQRTEKLLQLSRAASGSALAQDEVRLDALASMVASEFWQQDESTQLRLDVVLPEQPCGPVAGDVDTLAIALRNLVENALRYSDGSEVLLEVCDSRTVQVRDEGPGMDAAALSTARERHVRHVDDLRLPQGTVRELASPGYGLGLSIVSMIVAQHGGSLELQSPLPGSSNGLLARIQLPGCDPCVETDARS</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="47" xmlns="http://uniprot.org/uniprot">
    <accession>A9BSH9</accession>
    <name>A9BSH9_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_1148</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX33793.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012203079.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_1148"/>
    <dbReference type="PRIDE" id="A9BSH9"/>
    <dbReference type="EnsemblBacteria" id="ABX33793">
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        <property type="gene ID" value="Daci_1148"/>
    </dbReference>
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        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_146690_0_0_4"/>
    <dbReference type="OMA" id="AQRAYPF"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014991">
        <property type="entry name" value="DUF1840"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08895">
        <property type="entry name" value="DUF1840"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="54"/>
            <end position="83"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="54"/>
            <end position="71"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX33793.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="109" mass="11694" checksum="58317DA7611DBFE2" modified="2008-01-15" version="1">MLYKFKSRATADVIMLESNGRQVLEIVGKTPGASGIITVQQIPAAIEALEAAVADDDARRKASHEDEPQDGEQDSAAAGARDAVSLRQRAAPMIDMLRRSAAENSDVTW</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="62" xmlns="http://uniprot.org/uniprot">
    <accession>A9BTR2</accession>
    <name>A9BTR2_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_2688</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX35326.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_003056114.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_2688"/>
    <dbReference type="PRIDE" id="A9BTR2"/>
    <dbReference type="EnsemblBacteria" id="ABX35326">
        <property type="protein sequence ID" value="ABX35326"/>
        <property type="gene ID" value="Daci_2688"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_2688"/>
    <dbReference type="eggNOG" id="COG2847">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_100939_1_1_4"/>
    <dbReference type="OMA" id="LHIMLFD"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.40.1890">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007410">
        <property type="entry name" value="PCuAC"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036182">
        <property type="entry name" value="PCuAC_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR36302">
        <property type="entry name" value="PTHR36302"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04314">
        <property type="entry name" value="PCuAC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF110087">
        <property type="entry name" value="SSF110087"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="1">
        <location>
            <begin position="1"/>
            <end position="21"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5002733069" evidence="1">
        <location>
            <begin position="22"/>
            <end position="159"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX35326.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="159" mass="16891" checksum="C4353C0234198E68" modified="2008-01-15" version="1">MKLVIRTAIVAASLLAATAQAQVTVKDAWVRATVPQQKATGAFMQLKATKNSKLVSASSPLTPAVEVHEMAMQDNVMKMRQVPAVELPAGKTVELKPGGYHVMLMDLKQQVKEGDTVPLTLVIEGPDGKRESVEVKAPVRALNASAQPAGHDAQGGHKH</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="68" xmlns="http://uniprot.org/uniprot">
    <accession>A9BTW9</accession>
    <name>A9BTW9_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="9">Integrase family protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="9" type="ordered locus">Daci_2745</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="9 10" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="10" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX35383.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_2745"/>
    <dbReference type="PRIDE" id="A9BTW9"/>
    <dbReference type="EnsemblBacteria" id="ABX35383">
        <property type="protein sequence ID" value="ABX35383"/>
        <property type="gene ID" value="Daci_2745"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_2745"/>
    <dbReference type="eggNOG" id="COG0582">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_027562_17_7_4"/>
    <dbReference type="OMA" id="MPKLTKR"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015074">
        <property type="term" value="P:DNA integration"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006310">
        <property type="term" value="P:DNA recombination"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0075713">
        <property type="term" value="P:establishment of integrated proviral latency"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046718">
        <property type="term" value="P:viral entry into host cell"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0044826">
        <property type="term" value="P:viral genome integration into host DNA"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.150.130">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.443.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.160.390">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR044068">
        <property type="entry name" value="CB"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011010">
        <property type="entry name" value="DNA_brk_join_enz"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013762">
        <property type="entry name" value="Integrase-like_cat_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002104">
        <property type="entry name" value="Integrase_catalytic"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038488">
        <property type="entry name" value="Integrase_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025166">
        <property type="entry name" value="Integrase_DNA_bind_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010998">
        <property type="entry name" value="Integrase_recombinase_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004107">
        <property type="entry name" value="Integrase_SAM-like_N"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13356">
        <property type="entry name" value="Arm-DNA-bind_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF14659">
        <property type="entry name" value="Phage_int_SAM_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00589">
        <property type="entry name" value="Phage_integrase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56349">
        <property type="entry name" value="SSF56349"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51900">
        <property type="entry name" value="CB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51898">
        <property type="entry name" value="TYR_RECOMBINASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0229">DNA integration</keyword>
    <keyword evidence="3" id="KW-0233">DNA recombination</keyword>
    <keyword evidence="2 6" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4" id="KW-1179">Viral genome integration</keyword>
    <keyword evidence="5" id="KW-1160">Virus entry into host cell</keyword>
    <feature type="domain" description="Core-binding (CB)" evidence="8">
        <location>
            <begin position="114"/>
            <end position="194"/>
        </location>
    </feature>
    <feature type="domain" description="Tyr recombinase" evidence="7">
        <location>
            <begin position="216"/>
            <end position="395"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022908"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023172"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023195"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023296"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU01248"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="PROSITE" id="PS51898"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="PROSITE" id="PS51900"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="ABX35383.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="415" mass="46112" checksum="BBACFC8E639C5385" modified="2008-01-15" version="1">MAPTWLLGIGSFRGVIVAKLKLTKSAVDAAQPQAQAVELRDTLVPGFLCKVTPAGRKVFMLQYRTNAGERRKPALGLYGELTVEQARSLAQEWLAEVRRGGDPSAAKAAARSAPTVKELCTKFMEDYSKQRNKPSTQRGYQAVIDRCIVPMLGRLKVQDVKRPDVATAMKKMAHKPAEANRAFSVMRKMFNLAEVWGHRPDGTNPCRHVPMYPNGKATHLISDEDMGKLFRRLEHIEAEGLENYVIPLAIRLQFEFAGRRSEIVTLRWDWVDLDNRRVVWPDSKTGGMSKPMSEEAYRLLSTAPRQEGTPYVLPSPSHPGKHLTTGEYYGGWSRALKAAGATHVGTHGIRHRSATDIANSGIPVKVGMALTAHKTVAMFMRYVHTEDDPVRKAAELVANRRKTITEAQRPAEVAA</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="64" xmlns="http://uniprot.org/uniprot">
    <accession>A9BTY2</accession>
    <name>A9BTY2_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Enoyl-CoA hydratase/isomerase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Daci_2758</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="2" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX35396.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012204606.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_2758"/>
    <dbReference type="PRIDE" id="A9BTY2"/>
    <dbReference type="EnsemblBacteria" id="ABX35396">
        <property type="protein sequence ID" value="ABX35396"/>
        <property type="gene ID" value="Daci_2758"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_2758"/>
    <dbReference type="eggNOG" id="COG1024">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_009834_7_3_4"/>
    <dbReference type="OMA" id="LTQALMC"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016853">
        <property type="term" value="F:isomerase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029045">
        <property type="entry name" value="ClpP/crotonase-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001753">
        <property type="entry name" value="Enoyl-CoA_hydra/iso"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00378">
        <property type="entry name" value="ECH_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52096">
        <property type="entry name" value="SSF52096"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0413">Isomerase</keyword>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ABX35396.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="279" mass="31320" checksum="F1194F8FBA6CE429" modified="2008-01-15" version="1">MSTERTEEQTVSCTVTGRVAWVKFNRPEKRNAMSPQLNRQMMRVLDDLEFRDDVGVVVLAGEGTAWTAGMDLKEYFRETEATGLAGTRKAQRESYGWWRRLRWFQKPTIAMVNGWCFGGGYGPLFACDLAFASDDAKFGLSEINWGILPGGGASKVAVELLSFRRAMYHAMLGENIDGRTAAEWGLVNESLPADRLQARVTEVAEALLQKNPSALKATKDAIRRVRDMSYDNAEDYLVRAQEAANSFDNEGRKEGMRQFLDDKTYKPGLGTYDLSKQKS</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="76" xmlns="http://uniprot.org/uniprot">
    <accession>A9BU72</accession>
    <name>A9BU72_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="8">ABC transporter related</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="8" type="ordered locus">Daci_3149</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="9" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX35787.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012204988.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_3149"/>
    <dbReference type="PRIDE" id="A9BU72"/>
    <dbReference type="EnsemblBacteria" id="ABX35787">
        <property type="protein sequence ID" value="ABX35787"/>
        <property type="gene ID" value="Daci_3149"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_3149"/>
    <dbReference type="eggNOG" id="COG1120">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_000604_1_11_4"/>
    <dbReference type="OMA" id="FHIDAEI"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003593">
        <property type="entry name" value="AAA+_ATPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003439">
        <property type="entry name" value="ABC_transporter-like_ATP-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017871">
        <property type="entry name" value="ABC_transporter-like_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00005">
        <property type="entry name" value="ABC_tran"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00382">
        <property type="entry name" value="AAA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00211">
        <property type="entry name" value="ABC_TRANSPORTER_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50893">
        <property type="entry name" value="ABC_TRANSPORTER_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3 6" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="1" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="5" id="KW-0472">Membrane</keyword>
    <keyword evidence="2 6" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4" id="KW-1278">Translocase</keyword>
    <feature type="domain" description="ABC transporter" evidence="7">
        <location>
            <begin position="5"/>
            <end position="240"/>
        </location>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <begin position="37"/>
            <end position="44"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022967"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00434"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="PROSITE" id="PS50893"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="ABX35787.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="271" mass="29147" checksum="4ED39F7C4A3EBCD9" modified="2008-01-15" version="1">MTQRLSADAVTLRYGERTISQGLSLAIPDGSFTVIVGPNACGKSTLLRALSRLLVPAAGQVILDGRHISQFPAKEVARRLGLLPQSAVAPEGITVADLVARGRYPHQSFLRQWTDADEQAVAEAMQATDVAALSDRLLDELSGGQRQRVWIAMVLAQQTPILLLDEPTTFLDIAHQIELMELLADLNDARRTVVAVLHDLNQACRYASHLIAMRDGRIAAQGAPGAIFTEQLVQEVFGLPAVIIADPVSGTPLVVPRGRRAVNAMERAAGN</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="43" xmlns="http://uniprot.org/uniprot">
    <accession>A9BU76</accession>
    <name>A9BU76_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Daci_3153</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="2" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX35791.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012204992.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="PRIDE" id="A9BU76"/>
    <dbReference type="EnsemblBacteria" id="ABX35791">
        <property type="protein sequence ID" value="ABX35791"/>
        <property type="gene ID" value="Daci_3153"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_3153"/>
    <dbReference type="eggNOG" id="ENOG5033I9W">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_161888_1_0_4"/>
    <dbReference type="OMA" id="PENTHAQ"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ABX35791.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="123" mass="13284" checksum="215684078F5CABD3" modified="2008-01-15" version="1">MKHIPPSPPPENTHAQKLATALHEMDRFVQQGCAEVSALAQLALAWLEIPEGHQRLDVVAQALVTIRNSAESLAEFAGSEARVMNCEYEDQAEVRRSEAAKVAAEEAGHVYTVVGPGATRGVR</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-01-19" version="45" xmlns="http://uniprot.org/uniprot">
    <accession>A9BU81</accession>
    <name>A9BU81_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Daci_3158</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="2" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX35796.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_3158"/>
    <dbReference type="EnsemblBacteria" id="ABX35796">
        <property type="protein sequence ID" value="ABX35796"/>
        <property type="gene ID" value="Daci_3158"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_3158"/>
    <dbReference type="eggNOG" id="ENOG5032F55">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_160690_0_0_4"/>
    <dbReference type="OMA" id="PGFNEVR"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ABX35796.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="148" mass="16563" checksum="C41FC637F68BC09A" modified="2008-01-15" version="1">MACTVPAGADLPWASMSFPVQIPIRVPCPPGACICEHDALLADSMADQRILRLTREEEKRLLLRLEQITSLQDLRHVEQRMYEQLGIRVRIEPGASEVRTVRGIQIEVLSMRGLCSKTRQAIPAAIRRGMERTPEVAFELLDEGGLFG</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-05-25" version="74" xmlns="http://uniprot.org/uniprot">
    <accession>A9BUD4</accession>
    <name>A9BUD4_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Response regulator receiver modulated diguanylate cyclase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ordered locus">Daci_1192</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="5" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX33837.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012203123.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_1192"/>
    <dbReference type="EnsemblBacteria" id="ABX33837">
        <property type="protein sequence ID" value="ABX33837"/>
        <property type="gene ID" value="Daci_1192"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_1192"/>
    <dbReference type="eggNOG" id="COG3706">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_000445_11_28_4"/>
    <dbReference type="OMA" id="RMANPLT"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000160">
        <property type="term" value="P:phosphorelay signal transduction system"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd01949">
        <property type="entry name" value="GGDEF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.70.270">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011006">
        <property type="entry name" value="CheY-like_superfamily"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000160">
        <property type="entry name" value="GGDEF_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029787">
        <property type="entry name" value="Nucleotide_cyclase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043128">
        <property type="entry name" value="Rev_trsase/Diguanyl_cyclase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001789">
        <property type="entry name" value="Sig_transdc_resp-reg_receiver"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00990">
        <property type="entry name" value="GGDEF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00072">
        <property type="entry name" value="Response_reg"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00267">
        <property type="entry name" value="GGDEF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00448">
        <property type="entry name" value="REC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52172">
        <property type="entry name" value="SSF52172"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55073">
        <property type="entry name" value="SSF55073"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00254">
        <property type="entry name" value="GGDEF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50887">
        <property type="entry name" value="GGDEF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50110">
        <property type="entry name" value="RESPONSE_REGULATORY"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0597">Phosphoprotein</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Response regulatory" evidence="2">
        <location>
            <begin position="22"/>
            <end position="137"/>
        </location>
    </feature>
    <feature type="domain" description="GGDEF" evidence="3">
        <location>
            <begin position="180"/>
            <end position="316"/>
        </location>
    </feature>
    <feature type="modified residue" description="4-aspartylphosphate" evidence="1">
        <location>
            <position position="70"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00169"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS50110"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="PROSITE" id="PS50887"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="ABX33837.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="316" mass="34471" checksum="11111A559F8BB313" modified="2008-01-15" version="1">MPYSAFPPSLPNPLQPLPAAQKVLVVDDVPDNATVICQVIKDLCGPLVAYTGEEALALAHQHQPDLILLDIRMPGMDGFEVCRRLKADLQTAHIPIIFLTALTEPHCEELGLNLGAVDFVTKPFRPAVLKARVRTHLEIAQQRQMLQLLSHSDGLTGVANRRFFSAQLEREFMRLQRLGEPLSLVMMDVDHFKAYNDHYGHLVGDECLSQISQAIQGALHRPGDLLARYGGEEFVCLLPHTALDGAVLVAQGIVDALRLLDLPHAASPLGQALTVSLGVACIAPSSTNSAQQLLADADRRLYLAKNAGRDRIVWAG</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="55" xmlns="http://uniprot.org/uniprot">
    <accession>A9BUH4</accession>
    <name>A9BUH4_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Daci_1233</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="4" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Periplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the UPF0065 (bug) family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX33877.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_1233"/>
    <dbReference type="PRIDE" id="A9BUH4"/>
    <dbReference type="EnsemblBacteria" id="ABX33877">
        <property type="protein sequence ID" value="ABX33877"/>
        <property type="gene ID" value="Daci_1233"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_1233"/>
    <dbReference type="eggNOG" id="COG3181">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_045683_0_0_4"/>
    <dbReference type="OMA" id="VSWTGIF"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0042597">
        <property type="term" value="C:periplasmic space"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.190.150">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005064">
        <property type="entry name" value="BUG"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR042100">
        <property type="entry name" value="Bug_dom1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006311">
        <property type="entry name" value="TAT_signal"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR42928">
        <property type="entry name" value="PTHR42928"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03401">
        <property type="entry name" value="TctC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51318">
        <property type="entry name" value="TAT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004418"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00006987"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ABX33877.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="379" mass="39826" checksum="63DBD94288BF86D7" modified="2008-01-15" version="1">MASAWQENCALWQNRPLSTRWMCLPCRPSPARTAFAGMRLACPSPMPLSRRSLLSAAASLAAALAAAPAAHAAPGAGKPWPAAGPITLIVPFGAGSDVDATARLIAEKLGARLHQSVVVDNVPASGGVLGVSKVARSHADGYTLLLGFDGPVSIAQLVNSSVRYDAERDLAPVGLTTVAPMVIVARPGLPVHNLNELISMARARPGALTYATPGVGTVLHLAMERLQERARIRLVHVPYRGVAQVTSEVMGGQVDLGILMTTGATPLVQQKKLEGVGVTSAQRIDVIPEVMSFAEAPDLKGFELEAWTGLFAPARTPEPVVSRLAAELAEVLKLPEVRKRLQDSGATPGSGTPATFAQFLKKEKASYTQIVKSANIQVE</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="86" xmlns="http://uniprot.org/uniprot">
    <accession>A9BUJ1</accession>
    <name>A9BUJ1_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="9">Tyrosine recombinase XerC</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="9" type="primary">xerC</name>
        <name evidence="14" type="ordered locus">Daci_1455</name>
    </gene>
    <organism evidence="14 15">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="14 15" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="15">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="15" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="15">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="9">Site-specific tyrosine recombinase, which acts by catalyzing the cutting and rejoining of the recombining DNA molecules. The XerC-XerD complex is essential to convert dimers of the bacterial chromosome into monomers to permit their segregation at cell division. It also contributes to the segregational stability of plasmids.</text>
    </comment>
    <comment type="subunit">
        <text evidence="9">Forms a cyclic heterotetrameric complex composed of two molecules of XerC and two molecules of XerD.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1 9">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="9">Belongs to the 'phage' integrase family. XerC subfamily.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX34099.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012203385.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_1455"/>
    <dbReference type="PRIDE" id="A9BUJ1"/>
    <dbReference type="EnsemblBacteria" id="ABX34099">
        <property type="protein sequence ID" value="ABX34099"/>
        <property type="gene ID" value="Daci_1455"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_1455"/>
    <dbReference type="eggNOG" id="COG4973">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_027562_9_0_4"/>
    <dbReference type="OMA" id="HSFASHM"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009037">
        <property type="term" value="F:tyrosine-based site-specific recombinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0007049">
        <property type="term" value="P:cell cycle"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051301">
        <property type="term" value="P:cell division"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0007059">
        <property type="term" value="P:chromosome segregation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006313">
        <property type="term" value="P:transposition, DNA-mediated"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.150.130">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.443.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01808">
        <property type="entry name" value="Recomb_XerC_XerD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR044068">
        <property type="entry name" value="CB"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011010">
        <property type="entry name" value="DNA_brk_join_enz"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013762">
        <property type="entry name" value="Integrase-like_cat_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002104">
        <property type="entry name" value="Integrase_catalytic"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010998">
        <property type="entry name" value="Integrase_recombinase_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004107">
        <property type="entry name" value="Integrase_SAM-like_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023009">
        <property type="entry name" value="Tyrosine_recombinase_XerC/XerD"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02899">
        <property type="entry name" value="Phage_int_SAM_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00589">
        <property type="entry name" value="Phage_integrase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56349">
        <property type="entry name" value="SSF56349"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51900">
        <property type="entry name" value="CB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51898">
        <property type="entry name" value="TYR_RECOMBINASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="8 9" id="KW-0131">Cell cycle</keyword>
    <keyword evidence="3 9" id="KW-0132">Cell division</keyword>
    <keyword evidence="4 9" id="KW-0159">Chromosome partition</keyword>
    <keyword evidence="2 9" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="5 9" id="KW-0229">DNA integration</keyword>
    <keyword evidence="7 9" id="KW-0233">DNA recombination</keyword>
    <keyword evidence="6 9 10" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="15" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Core-binding (CB)" evidence="13">
        <location>
            <begin position="26"/>
            <end position="111"/>
        </location>
    </feature>
    <feature type="domain" description="Tyr recombinase" evidence="12">
        <location>
            <begin position="132"/>
            <end position="333"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="11">
        <location>
            <begin position="335"/>
            <end position="365"/>
        </location>
    </feature>
    <feature type="active site" evidence="9">
        <location>
            <position position="174"/>
        </location>
    </feature>
    <feature type="active site" evidence="9">
        <location>
            <position position="209"/>
        </location>
    </feature>
    <feature type="active site" evidence="9">
        <location>
            <position position="285"/>
        </location>
    </feature>
    <feature type="active site" evidence="9">
        <location>
            <position position="288"/>
        </location>
    </feature>
    <feature type="active site" evidence="9">
        <location>
            <position position="311"/>
        </location>
    </feature>
    <feature type="active site" description="O-(3'-phospho-DNA)-tyrosine intermediate" evidence="9">
        <location>
            <position position="320"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004496"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022490"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022618"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022829"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022908"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023172"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00023306"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01808"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU01248"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="12">
        <source>
            <dbReference type="PROSITE" id="PS51898"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="13">
        <source>
            <dbReference type="PROSITE" id="PS51900"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="14">
        <source>
            <dbReference type="EMBL" id="ABX34099.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="15">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="365" mass="39308" checksum="BB26032EA8D22F46" modified="2008-01-15" version="1">MPGASDRDGLPEGDIPAEDLAAENLALLPAAVHAYLEHVRVQKRLADRTCALYALDMARLCTMARDAGQELLALQPAHIRRFVAQMHSRGRSPRGIALILSGWRSFFRWAAQQSLVPFNPVEGVRGPKAPKPLPKALGVDDAVQLAAFSNAEADPWIEARDAAITELLYSCGLRVGELVGLDVAPGQDTQRQGRGWIDLQAADAHVQGKGGKRRTVPVGAAALQALQRWLALRETGLAGAAALAAHHESALFIGRRGERLGAQSVWTRLRQRGQQAGLSAGVHPHVLRHSFASHMLQSSGDLRAVQELLGHASISTTQIYTRLDFQHLAQAYENAHPRARRQSGGGSDSGDGDGNGDNDEKGRPR</sequence>
</entry>
<entry dataset="Swiss-Prot" created="2009-03-24" modified="2022-08-03" version="77" xmlns="http://uniprot.org/uniprot">
    <accession>A9BUJ5</accession>
    <name>HSLV_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">ATP-dependent protease subunit HslV</fullName>
            <ecNumber evidence="1">3.4.25.2</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="1" type="primary">hslV</name>
        <name type="ordered locus">Daci_1459</name>
    </gene>
    <organism>
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference key="1">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain>DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="1">Protease subunit of a proteasome-like degradation complex believed to be a general protein degrading machinery.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>ATP-dependent cleavage of peptide bonds with broad specificity.</text>
            <dbReference type="EC" id="3.4.25.2"/>
        </reaction>
    </comment>
    <comment type="activity regulation">
        <text evidence="1">Allosterically activated by HslU binding.</text>
    </comment>
    <comment type="subunit">
        <text evidence="1">A double ring-shaped homohexamer of HslV is capped on each side by a ring-shaped HslU homohexamer. The assembly of the HslU/HslV complex is dependent on binding of ATP.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="1">Belongs to the peptidase T1B family. HslV subfamily.</text>
    </comment>
    <dbReference type="EC" id="3.4.25.2" evidence="1"/>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX34103.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012203389.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A9BUJ5"/>
    <dbReference type="SMR" id="A9BUJ5"/>
    <dbReference type="STRING" id="398578.Daci_1459"/>
    <dbReference type="MEROPS" id="T01.007"/>
    <dbReference type="PRIDE" id="A9BUJ5"/>
    <dbReference type="EnsemblBacteria" id="ABX34103">
        <property type="protein sequence ID" value="ABX34103"/>
        <property type="gene ID" value="Daci_1459"/>
    </dbReference>
    <dbReference type="GeneID" id="60686000"/>
    <dbReference type="KEGG" id="dac:Daci_1459"/>
    <dbReference type="eggNOG" id="COG5405">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_093872_1_0_4"/>
    <dbReference type="OMA" id="IMKGNAR"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009376">
        <property type="term" value="C:HslUV protease complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005839">
        <property type="term" value="C:proteasome core complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004298">
        <property type="term" value="F:threonine-type endopeptidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051603">
        <property type="term" value="P:proteolysis involved in protein catabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd01913">
        <property type="entry name" value="protease_HslV"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.60.20.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00248">
        <property type="entry name" value="HslV"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR022281">
        <property type="entry name" value="ATP-dep_Prtase_HsIV_su"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029055">
        <property type="entry name" value="Ntn_hydrolases_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001353">
        <property type="entry name" value="Proteasome_sua/b"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023333">
        <property type="entry name" value="Proteasome_suB-type"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR32194">
        <property type="entry name" value="PTHR32194"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00227">
        <property type="entry name" value="Proteasome"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF039093">
        <property type="entry name" value="HslV"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56235">
        <property type="entry name" value="SSF56235"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR03692">
        <property type="entry name" value="ATP_dep_HslV"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51476">
        <property type="entry name" value="PROTEASOME_BETA_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword id="KW-0021">Allosteric enzyme</keyword>
    <keyword id="KW-0963">Cytoplasm</keyword>
    <keyword id="KW-0378">Hydrolase</keyword>
    <keyword id="KW-0479">Metal-binding</keyword>
    <keyword id="KW-0645">Protease</keyword>
    <keyword id="KW-1185">Reference proteome</keyword>
    <keyword id="KW-0915">Sodium</keyword>
    <keyword id="KW-0888">Threonine protease</keyword>
    <feature type="chain" id="PRO_1000100888" description="ATP-dependent protease subunit HslV">
        <location>
            <begin position="1"/>
            <end position="181"/>
        </location>
    </feature>
    <feature type="active site" evidence="1">
        <location>
            <position position="7"/>
        </location>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <position position="166"/>
        </location>
        <ligand>
            <name>Na(+)</name>
            <dbReference type="ChEBI" id="CHEBI:29101"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <position position="169"/>
        </location>
        <ligand>
            <name>Na(+)</name>
            <dbReference type="ChEBI" id="CHEBI:29101"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <position position="172"/>
        </location>
        <ligand>
            <name>Na(+)</name>
            <dbReference type="ChEBI" id="CHEBI:29101"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000255" key="1">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00248"/>
        </source>
    </evidence>
    <sequence length="181" mass="19450" checksum="F1D45029FEA4ED7B" modified="2008-01-15" version="1">MEQYHGTTIISVRRQTPEGVQVAIGGDGQVTLGNIVVKGTARKVRKLYHGKVLAGFAGATADAFTLFERFEAKLEKHQGHLTRAAIELTKDWRTDRVLRRLEAMLAVADASASLIITGNGDVLEPEQGIVSIGSGGAYAHSAAKALLTNTELSAEEIVRKSLAIAGELCIYTNMHHTVETL</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="75" xmlns="http://uniprot.org/uniprot">
    <accession>A9BUT9</accession>
    <name>A9BUT9_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="3">CoA-binding domain protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Daci_1759</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="4" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX34401.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012203686.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_1759"/>
    <dbReference type="PRIDE" id="A9BUT9"/>
    <dbReference type="EnsemblBacteria" id="ABX34401">
        <property type="protein sequence ID" value="ABX34401"/>
        <property type="gene ID" value="Daci_1759"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_1759"/>
    <dbReference type="eggNOG" id="COG0045">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
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        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_007415_3_1_4"/>
    <dbReference type="OMA" id="EDFEHMF"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.1490.20">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.261">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011761">
        <property type="entry name" value="ATP-grasp"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013815">
        <property type="entry name" value="ATP_grasp_subdomain_1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003781">
        <property type="entry name" value="CoA-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036291">
        <property type="entry name" value="NAD(P)-bd_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR032875">
        <property type="entry name" value="Succ_CoA_lig_flav_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016102">
        <property type="entry name" value="Succinyl-CoA_synth-like"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13380">
        <property type="entry name" value="CoA_binding_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13607">
        <property type="entry name" value="Succ_CoA_lig"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00881">
        <property type="entry name" value="CoA_binding"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51735">
        <property type="entry name" value="SSF51735"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52210">
        <property type="entry name" value="SSF52210"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50975">
        <property type="entry name" value="ATP_GRASP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="1" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="ATP-grasp" evidence="2">
        <location>
            <begin position="486"/>
            <end position="699"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00409"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS50975"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ABX34401.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="700" mass="72363" checksum="65B883B5B453F338" modified="2008-01-15" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2021-06-02" version="53" xmlns="http://uniprot.org/uniprot">
    <accession>A9BUU9</accession>
    <name>A9BUU9_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Dicarboxylate carrier MatC domain protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Daci_1769</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="4" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX34411.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012203696.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_1769"/>
    <dbReference type="EnsemblBacteria" id="ABX34411">
        <property type="protein sequence ID" value="ABX34411"/>
        <property type="gene ID" value="Daci_1769"/>
    </dbReference>
    <dbReference type="GeneID" id="60686195"/>
    <dbReference type="KEGG" id="dac:Daci_1769"/>
    <dbReference type="eggNOG" id="COG0471">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_052316_1_0_4"/>
    <dbReference type="OMA" id="MVIHGAQ"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR030676">
        <property type="entry name" value="CitT-rel"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009827">
        <property type="entry name" value="MatC_N"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR42826">
        <property type="entry name" value="PTHR42826"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07158">
        <property type="entry name" value="MatC_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="12"/>
            <end position="41"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="47"/>
            <end position="70"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="91"/>
            <end position="108"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="114"/>
            <end position="132"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="139"/>
            <end position="159"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="174"/>
            <end position="194"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="265"/>
            <end position="283"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="289"/>
            <end position="306"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="313"/>
            <end position="331"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="351"/>
            <end position="382"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="435"/>
            <end position="456"/>
        </location>
    </feature>
    <feature type="domain" description="MatC_N" evidence="2">
        <location>
            <begin position="1"/>
            <end position="149"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF07158"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ABX34411.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="457" mass="47271" checksum="7139286EEE42A9EB" modified="2008-01-15" version="1">MNSHWISIGALIGMFVLATALPINMGLLAFVGAFLVGTLVAGMGTKAIIGGFPADLFLTLAGITYLFALAQNNGTIDWLVRMAVRAVRGRIAAIPWIMFFIAALLTAVGAVSPAAVAIIAPIALGFAAKYGINPLMMGLLVIHGAQGGGFSPISIYGGITNKIVAKAGLPLNEMATMLASMGVNLAVAVLLFFLMGGARLMRMKADADGSVPATPRVSHAQGGAQVYGDAEGEALSEERNTAARSSDSLMRAAPEQDAAPQSRSYQVATVVGLLALAVLTLFFKQDIGFVSITIGLVLTLMAPNLQKRALGQVSWPEIMLIVGVSTYVGVMDKMGTIDFVGHSVAQLTSPLVAALLLCFVGAVVSAFASSTAVLGSLIPLAVPFLQGGSDVSAVGFIAAMAVSSTIVDVSPFSTNGALVLANAKGVDRDRFFRQLMVYGGLVTLVAPLLVWLLFVVL</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="58" xmlns="http://uniprot.org/uniprot">
    <accession>A9BUX1</accession>
    <name>A9BUX1_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Putative dehydrogenase/oxygenase subunit (Flavoprotein)</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_1791</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX34433.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012203718.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_1791"/>
    <dbReference type="PRIDE" id="A9BUX1"/>
    <dbReference type="EnsemblBacteria" id="ABX34433">
        <property type="protein sequence ID" value="ABX34433"/>
        <property type="gene ID" value="Daci_1791"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_1791"/>
    <dbReference type="eggNOG" id="COG0644">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_033694_0_0_4"/>
    <dbReference type="OMA" id="GYEVTLM"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.50.50.60">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036188">
        <property type="entry name" value="FAD/NAD-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041654">
        <property type="entry name" value="StyA_sbd"/>
    </dbReference>
    <dbReference type="Pfam" id="PF17885">
        <property type="entry name" value="Smoa_sbd"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51905">
        <property type="entry name" value="SSF51905"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Smoa_sbd" evidence="1">
        <location>
            <begin position="152"/>
            <end position="259"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF17885"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX34433.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="431" mass="46494" checksum="394033F994CBF88F" modified="2008-01-15" version="1">MKKIAIVGAGQSGLQLGLGLLAAGHQVTILSNRTAQDIAQGRVMSSQCMFDSALQIERGLGLDHWSRECPVVEGIGLCVPHPGQHGEKAAGKAIDWAARLNAGAQSVDQRLKIPAWMDDFRRQGGELVLKDAGIAELEECTRSHDLTLVASGKGEISRLFERDAHRSRFDQPQRALALTYVTGMKPREPFSAVSFNLLPGVGEYFVFPALTTTGPCEIMVFEGVPGGPMDCWGDVKTPEQHLERSRWILDTFVPWEAERCRDIALTDDNGILAGRFAPTVRKPVATLPSGRKVLGMGDVVVLNDPITGQGSNNAAKCADTYLRSILARGNGDGSGDGNGAFDAAWMQQTFDRYWFGYAQWVTQWTNMLLAPPPPHVLKLLASAGTLAPLASAFANGFDDPRTFFPWFADAGEADHYIDSCAAIAAMAAVPA</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="72" xmlns="http://uniprot.org/uniprot">
    <accession>A9BUX6</accession>
    <name>A9BUX6_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="5">2-dehydropantoate 2-reductase</fullName>
            <ecNumber evidence="4">1.1.1.169</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="8">Ketopantoate reductase</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="11" type="ordered locus">Daci_1796</name>
    </gene>
    <organism evidence="11 12">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="11 12" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="12">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="12" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="12">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>(R)-pantoate + NADP(+) = 2-dehydropantoate + H(+) + NADPH</text>
            <dbReference type="Rhea" id="RHEA:16233"/>
            <dbReference type="ChEBI" id="CHEBI:11561"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:15980"/>
            <dbReference type="ChEBI" id="CHEBI:57783"/>
            <dbReference type="ChEBI" id="CHEBI:58349"/>
            <dbReference type="EC" id="1.1.1.169"/>
        </reaction>
    </comment>
    <comment type="pathway">
        <text evidence="2">Cofactor biosynthesis; (R)-pantothenate biosynthesis; (R)-pantoate from 3-methyl-2-oxobutanoate: step 2/2.</text>
    </comment>
    <comment type="similarity">
        <text evidence="3">Belongs to the ketopantoate reductase family.</text>
    </comment>
    <dbReference type="EC" id="1.1.1.169" evidence="4"/>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX34438.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012203723.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_1796"/>
    <dbReference type="PRIDE" id="A9BUX6"/>
    <dbReference type="EnsemblBacteria" id="ABX34438">
        <property type="protein sequence ID" value="ABX34438"/>
        <property type="gene ID" value="Daci_1796"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_1796"/>
    <dbReference type="eggNOG" id="COG1893">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_031468_6_1_4"/>
    <dbReference type="OMA" id="FKLWGNM"/>
    <dbReference type="UniPathway" id="UPA00028">
        <property type="reaction ID" value="UER00004"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008677">
        <property type="term" value="F:2-dehydropantoate 2-reductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015940">
        <property type="term" value="P:pantothenate biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniPathway"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.1040.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008927">
        <property type="entry name" value="6-PGluconate_DH-like_C_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013328">
        <property type="entry name" value="6PGD_dom2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013752">
        <property type="entry name" value="KPA_reductase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013332">
        <property type="entry name" value="KPR_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036291">
        <property type="entry name" value="NAD(P)-bd_dom_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02558">
        <property type="entry name" value="ApbA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08546">
        <property type="entry name" value="ApbA_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48179">
        <property type="entry name" value="SSF48179"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51735">
        <property type="entry name" value="SSF51735"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="7" id="KW-0520">NAD</keyword>
    <keyword evidence="11" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="6" id="KW-0566">Pantothenate biosynthesis</keyword>
    <keyword evidence="12" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="ApbA" evidence="9">
        <location>
            <begin position="14"/>
            <end position="178"/>
        </location>
    </feature>
    <feature type="domain" description="ApbA_C" evidence="10">
        <location>
            <begin position="212"/>
            <end position="332"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00000784"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00004994"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00007870"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00013014"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00019465"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022655"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023027"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00032024"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="9">
        <source>
            <dbReference type="Pfam" id="PF02558"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="10">
        <source>
            <dbReference type="Pfam" id="PF08546"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="EMBL" id="ABX34438.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="341" mass="35884" checksum="F6F3C079CFD940CE" modified="2008-01-15" version="1">MTMEQTSISFDKACIFGAGAIGGWMGAALARAGCQLSAVARGAALQALRTQGLTLVHGEQREHFALRAEQDPAALGVQDLVIISVKAPGMPDVAEHIAPLIGPQTVVLTAMNGVPWWFLQGGVDASVRGRQLKAVDPEGRIAQAIPLGQVLGSVVHASCSNDAPGVVRRHFGNSLILGEPLATGPCQPPTPRLAALAQLLQRGGIEAKVSDNIQRDAWYKLWGNMTVNPVSALTGATSDRILGDDLVRGLITRVMLEAKEIGARIGLPINESPEDRHAVTLKLGAFKTSMLQDVEAGKPVELDALVGAVREMGQLCGVDTPFTDALLGLARLQARQKGLMA</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="49" xmlns="http://uniprot.org/uniprot">
    <accession>A9BV00</accession>
    <name>A9BV00_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_1820</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX34462.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012203747.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_1820"/>
    <dbReference type="PRIDE" id="A9BV00"/>
    <dbReference type="EnsemblBacteria" id="ABX34462">
        <property type="protein sequence ID" value="ABX34462"/>
        <property type="gene ID" value="Daci_1820"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_1820"/>
    <dbReference type="eggNOG" id="ENOG5032ZD6">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_161988_1_0_4"/>
    <dbReference type="OMA" id="AMRCGNG"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR021430">
        <property type="entry name" value="DUF3079"/>
    </dbReference>
    <dbReference type="Pfam" id="PF11278">
        <property type="entry name" value="DUF3079"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="48"/>
            <end position="70"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX34462.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="70" mass="7794" checksum="1DE0583DB608623D" modified="2008-01-15" version="1">MAKRFPIHPAHPERTCWGCDRYCARDELACGNGSDRTQHPVEVFGDDWMEWGLPPEPAADKAPGLDSAAR</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="64" xmlns="http://uniprot.org/uniprot">
    <accession>A9BV29</accession>
    <name>A9BV29_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Alpha/beta hydrolase fold</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_1851</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX34491.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012203776.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_1851"/>
    <dbReference type="ESTHER" id="delac-s2xae8">
        <property type="family name" value="NFM-deformylase"/>
    </dbReference>
    <dbReference type="PRIDE" id="A9BV29"/>
    <dbReference type="EnsemblBacteria" id="ABX34491">
        <property type="protein sequence ID" value="ABX34491"/>
        <property type="gene ID" value="Daci_1851"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_1851"/>
    <dbReference type="eggNOG" id="COG2267">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_020336_13_5_4"/>
    <dbReference type="OMA" id="ITWGFVA"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016787">
        <property type="term" value="F:hydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.1820">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029058">
        <property type="entry name" value="AB_hydrolase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000073">
        <property type="entry name" value="AB_hydrolase_1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00561">
        <property type="entry name" value="Abhydrolase_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53474">
        <property type="entry name" value="SSF53474"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="AB hydrolase-1" evidence="1">
        <location>
            <begin position="43"/>
            <end position="266"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF00561"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX34491.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="283" mass="30969" checksum="F6557535EDADBE66" modified="2008-01-15" version="1">MTSHSSSPTPSTFRYGGNVHANGIRQHYLRYGGAEGDRAQRDAVILIPGITSPAVTWGFVAEHLGRQFDTYVLDVRGRGLSSSDPGLDYSLDAQAADVAAFAQALGLQRWALVGHSMGGRIAVRAARSQPVGLTRLVIVDPPVSGPGRRAYPAALPWYVDSIRQATLGMDAEAMRAFCPTWTEEQRQLRAQWLHTCHEPAIVQSFEDFGRDDIHADLPRIQHPLLLVTAERGDVVRSEDVAEWQGLAPQTEHVRVPNAGHMIPWDNEAGFYAALGDFLGARVD</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="84" xmlns="http://uniprot.org/uniprot">
    <accession>A9BV39</accession>
    <name>A9BV39_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="7">Formate dehydrogenase</fullName>
            <ecNumber evidence="7">1.17.1.9</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="19" type="ordered locus">Daci_1861</name>
    </gene>
    <organism evidence="19 20">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="19 20" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="20">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="20" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="20">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>formate + NAD(+) = CO2 + NADH</text>
            <dbReference type="Rhea" id="RHEA:15985"/>
            <dbReference type="ChEBI" id="CHEBI:15740"/>
            <dbReference type="ChEBI" id="CHEBI:16526"/>
            <dbReference type="ChEBI" id="CHEBI:57540"/>
            <dbReference type="ChEBI" id="CHEBI:57945"/>
            <dbReference type="EC" id="1.17.1.9"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="2">
            <name>2Fe-2S cluster</name>
            <dbReference type="ChEBI" id="CHEBI:49601"/>
        </cofactor>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="3">
            <name>Mo-bis(molybdopterin guanine dinucleotide)</name>
            <dbReference type="ChEBI" id="CHEBI:60539"/>
        </cofactor>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="4">
            <name>[4Fe-4S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:49883"/>
        </cofactor>
    </comment>
    <comment type="similarity">
        <text evidence="6">Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.</text>
    </comment>
    <comment type="similarity">
        <text evidence="5">In the C-terminal section; belongs to the prokaryotic molybdopterin-containing oxidoreductase family.</text>
    </comment>
    <dbReference type="EC" id="1.17.1.9" evidence="7"/>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX34501.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012203786.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_1861"/>
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        <property type="protein sequence ID" value="ABX34501"/>
        <property type="gene ID" value="Daci_1861"/>
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    <dbReference type="KEGG" id="dac:Daci_1861"/>
    <dbReference type="eggNOG" id="COG3383">
        <property type="taxonomic scope" value="Bacteria"/>
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    <dbReference type="HOGENOM" id="CLU_000422_4_0_4"/>
    <dbReference type="OMA" id="DGPPCCY"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009326">
        <property type="term" value="C:formate dehydrogenase complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
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        <property type="term" value="F:2 iron, 2 sulfur cluster binding"/>
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        <property type="project" value="UniProtKB-KW"/>
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        <property type="project" value="UniProtKB-UniRule"/>
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    <dbReference type="GO" id="GO:0008863">
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        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
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        <property type="term" value="F:molybdopterin cofactor binding"/>
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        <property type="project" value="InterPro"/>
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    <dbReference type="GO" id="GO:0015942">
        <property type="term" value="P:formate metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
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        <property type="entry name" value="fer2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="CDD" id="cd02753">
        <property type="entry name" value="MopB_Formate-Dh-H"/>
        <property type="match status" value="1"/>
    </dbReference>
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        <property type="entry name" value="2Fe-2S_ferredoxin-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001041">
        <property type="entry name" value="2Fe-2S_ferredoxin-type"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017896">
        <property type="entry name" value="4Fe4S_Fe-S-bd"/>
    </dbReference>
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        <property type="entry name" value="4Fe4S_Fe_S_CS"/>
    </dbReference>
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        <property type="entry name" value="Asp_de-COase-like_dom_sf"/>
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        <property type="entry name" value="Formate_Dh-H_N"/>
    </dbReference>
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        <property type="entry name" value="Formate_DH_asu"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006657">
        <property type="entry name" value="MoPterin_dinucl-bd_dom"/>
    </dbReference>
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        <property type="entry name" value="Mopterin_OxRdtase"/>
    </dbReference>
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        <property type="entry name" value="Mopterin_OxRdtase_4Fe-4S_dom"/>
    </dbReference>
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        <property type="entry name" value="Mopterin_OxRdtase_prok_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019574">
        <property type="entry name" value="NADH_UbQ_OxRdtase_Gsu_4Fe4S-bd"/>
    </dbReference>
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        <property type="entry name" value="Fer4_7"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04879">
        <property type="entry name" value="Molybdop_Fe4S4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00384">
        <property type="entry name" value="Molybdopterin"/>
        <property type="match status" value="1"/>
    </dbReference>
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        <property type="entry name" value="Molydop_binding"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF10588">
        <property type="entry name" value="NADH-G_4Fe-4S_3"/>
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    </dbReference>
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    </dbReference>
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    </dbReference>
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    </dbReference>
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        <property type="match status" value="1"/>
    </dbReference>
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        <property type="entry name" value="Fdh-alpha"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51085">
        <property type="entry name" value="2FE2S_FER_2"/>
        <property type="match status" value="1"/>
    </dbReference>
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        <property type="match status" value="1"/>
    </dbReference>
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        <property type="entry name" value="4FE4S_FER_2"/>
        <property type="match status" value="2"/>
    </dbReference>
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        <property type="match status" value="1"/>
    </dbReference>
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        <property type="match status" value="1"/>
    </dbReference>
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        <property type="entry name" value="MOLYBDOPTERIN_PROK_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="9" id="KW-0001">2Fe-2S</keyword>
    <keyword evidence="8 14" id="KW-0004">4Fe-4S</keyword>
    <keyword evidence="12 14" id="KW-0408">Iron</keyword>
    <keyword evidence="13 14" id="KW-0411">Iron-sulfur</keyword>
    <keyword evidence="10 14" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="20" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="11" id="KW-0677">Repeat</keyword>
    <feature type="domain" description="2Fe-2S ferredoxin-type" evidence="15">
        <location>
            <begin position="19"/>
            <end position="97"/>
        </location>
    </feature>
    <feature type="domain" description="4Fe-4S His(Cys)3-ligated-type" evidence="18">
        <location>
            <begin position="97"/>
            <end position="136"/>
        </location>
    </feature>
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        <location>
            <begin position="163"/>
            <end position="194"/>
        </location>
    </feature>
    <feature type="domain" description="4Fe-4S ferredoxin-type" evidence="16">
        <location>
            <begin position="207"/>
            <end position="235"/>
        </location>
    </feature>
    <feature type="domain" description="4Fe-4S Mo/W bis-MGD-type" evidence="17">
        <location>
            <begin position="242"/>
            <end position="298"/>
        </location>
    </feature>
    <feature type="binding site" evidence="14">
        <location>
            <position position="249"/>
        </location>
        <ligand>
            <name>[4Fe-4S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:49883"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="14">
        <location>
            <position position="252"/>
        </location>
        <ligand>
            <name>[4Fe-4S] cluster</name>
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        </ligand>
    </feature>
    <feature type="binding site" evidence="14">
        <location>
            <position position="256"/>
        </location>
        <ligand>
            <name>[4Fe-4S] cluster</name>
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        </ligand>
    </feature>
    <feature type="binding site" evidence="14">
        <location>
            <position position="284"/>
        </location>
        <ligand>
            <name>[4Fe-4S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:49883"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00000455"/>
        </source>
    </evidence>
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        <source>
            <dbReference type="ARBA" id="ARBA00001939"/>
        </source>
    </evidence>
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        <source>
            <dbReference type="ARBA" id="ARBA00001942"/>
        </source>
    </evidence>
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        <source>
            <dbReference type="ARBA" id="ARBA00001966"/>
        </source>
    </evidence>
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        <source>
            <dbReference type="ARBA" id="ARBA00007023"/>
        </source>
    </evidence>
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        <source>
            <dbReference type="ARBA" id="ARBA00010312"/>
        </source>
    </evidence>
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        <source>
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        </source>
    </evidence>
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        </source>
    </evidence>
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        <source>
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        </source>
    </evidence>
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        <source>
            <dbReference type="ARBA" id="ARBA00023004"/>
        </source>
    </evidence>
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        <source>
            <dbReference type="ARBA" id="ARBA00023014"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="14">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU01004"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="15">
        <source>
            <dbReference type="PROSITE" id="PS51085"/>
        </source>
    </evidence>
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        <source>
            <dbReference type="PROSITE" id="PS51379"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="17">
        <source>
            <dbReference type="PROSITE" id="PS51669"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="18">
        <source>
            <dbReference type="PROSITE" id="PS51839"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="19">
        <source>
            <dbReference type="EMBL" id="ABX34501.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="20">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="978" mass="106418" checksum="EE89C42C95CEA758" modified="2008-01-15" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="67" xmlns="http://uniprot.org/uniprot">
    <accession>A9BV91</accession>
    <name>A9BV91_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Hydroxypyruvate reductase</fullName>
            <ecNumber evidence="3">1.1.1.81</ecNumber>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Daci_2115</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
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            <taxon>Comamonadaceae</taxon>
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        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="4" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
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        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
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        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
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        <property type="gene ID" value="Daci_2115"/>
    </dbReference>
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        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_032279_1_1_4"/>
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    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008887">
        <property type="term" value="F:glycerate kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016618">
        <property type="term" value="F:hydroxypyruvate reductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
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        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.10180">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037035">
        <property type="entry name" value="GK-like_C_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038614">
        <property type="entry name" value="GK_N_sf"/>
    </dbReference>
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        <property type="entry name" value="MOFRL"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025286">
        <property type="entry name" value="MOFRL_assoc_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR039760">
        <property type="entry name" value="MOFRL_protein"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR12227">
        <property type="entry name" value="PTHR12227"/>
        <property type="match status" value="1"/>
    </dbReference>
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        <property type="entry name" value="DUF4147"/>
        <property type="match status" value="1"/>
    </dbReference>
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        <property type="entry name" value="MOFRL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
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    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="DUF4147" evidence="2">
        <location>
            <begin position="17"/>
            <end position="243"/>
        </location>
    </feature>
    <feature type="domain" description="MOFRL" evidence="1">
        <location>
            <begin position="322"/>
            <end position="433"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF05161"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF13660"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ABX34755.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="440" mass="46182" checksum="BE198FA43820FBBB" modified="2008-01-15" version="1">MTSTTDLHLTDPQAFLLDLYRAAVKDAQPLYSMAQCLPKPPKGRTLVLGAGKAGGSMAQALEALWPADAPLSGLVVTRYHHIPPRPEGLAQRIEVVEAAHPVPDAAGLAAAERILALTEGLTEDDLVLCLISGGGSALLTLPAEGIDLEEKQRINRALLESGAAISEMNCVRKHLSRIKGGRLGAACAPARVVTLTISDVPGDDPSIIASGPTVPDASSCADALAILARYRIDVPESVRRALEAGELETPKPGDARFDGHEVHMIATPQHSLEAAARVAEAAGLRTHVLSDEIEGESREVAKVHAALARAVARHGQPFAKPCVILSGGETTVTIRQRPAGTPKGRGGRAGEFCMGLAQALQGQEKVWALAADTDGIDGVEDNAGARVSPDTLARAQAQGMRIAEYLDRNDAYGFFDALGDLVVTGPTHTNVNDFRAILVL</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="47" xmlns="http://uniprot.org/uniprot">
    <accession>A9BVA9</accession>
    <name>A9BVA9_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">DUF6351 domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Daci_2133</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
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            <taxon>Comamonadaceae</taxon>
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        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="4" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX34773.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012204056.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_2133"/>
    <dbReference type="PRIDE" id="A9BVA9"/>
    <dbReference type="EnsemblBacteria" id="ABX34773">
        <property type="protein sequence ID" value="ABX34773"/>
        <property type="gene ID" value="Daci_2133"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_2133"/>
    <dbReference type="eggNOG" id="ENOG502Z8TE">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_014414_0_0_4"/>
    <dbReference type="OMA" id="WICATRN"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045556">
        <property type="entry name" value="DUF6351"/>
    </dbReference>
    <dbReference type="Pfam" id="PF19878">
        <property type="entry name" value="DUF6351"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="DUF6351" evidence="2">
        <location>
            <begin position="37"/>
            <end position="737"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="744"/>
            <end position="763"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF19878"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ABX34773.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="763" mass="80733" checksum="51142D016E046199" modified="2008-01-15" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="54" xmlns="http://uniprot.org/uniprot">
    <accession>A9BVD0</accession>
    <name>A9BVD0_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="6">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ordered locus">Daci_2154</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="7" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Single-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX34794.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012204077.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_2154"/>
    <dbReference type="PRIDE" id="A9BVD0"/>
    <dbReference type="EnsemblBacteria" id="ABX34794">
        <property type="protein sequence ID" value="ABX34794"/>
        <property type="gene ID" value="Daci_2154"/>
    </dbReference>
    <dbReference type="GeneID" id="60686549"/>
    <dbReference type="KEGG" id="dac:Daci_2154"/>
    <dbReference type="eggNOG" id="COG2321">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_059329_0_0_4"/>
    <dbReference type="OMA" id="QKRSQGY"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007343">
        <property type="entry name" value="Uncharacterised_pept_Zn_put"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30168">
        <property type="entry name" value="PTHR30168"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04228">
        <property type="entry name" value="Zn_peptidase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-0472">Membrane</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="3" id="KW-1133">Transmembrane helix</keyword>
    <feature type="region of interest" description="Disordered" evidence="5">
        <location>
            <begin position="1"/>
            <end position="26"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="5">
        <location>
            <begin position="1"/>
            <end position="20"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004167"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="ABX34794.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="292" mass="30908" checksum="317F4C303E5F25E8" modified="2008-01-15" version="1">MRWDGNRESDNVEDRRDEGGGGGGPVFGGRSIGIGTIVIALVGGWVLGINPLTILGALSGGSPVQVQQPQGPAHKPPADDKLARFVSTVLADTEDVWRDVFRQGGAQYTDPKLVLFRGATPTACGTGQSAMGPFYCPADQKVYIDLGFYETLKNQLGAPGDFAQAYVIAHEVGHHVQNLLGISAQVDRARGRVSKVEYNHLSVKLELQADCLAGVWANRAQSARQILEQGDVESAMNAASKIGDDALQRAGGGAVVPDSFTHGTSAQRQRWFSTGLRTGSVKSCDTFSAASL</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="66" xmlns="http://uniprot.org/uniprot">
    <accession>A9BVG2</accession>
    <name>A9BVG2_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="7">Electron transfer flavoprotein alpha subunit</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ordered locus">Daci_2391</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="8" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the ETF alpha-subunit/FixB family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX35029.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012204311.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_2391"/>
    <dbReference type="PRIDE" id="A9BVG2"/>
    <dbReference type="EnsemblBacteria" id="ABX35029">
        <property type="protein sequence ID" value="ABX35029"/>
        <property type="gene ID" value="Daci_2391"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_2391"/>
    <dbReference type="eggNOG" id="COG2025">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_034178_0_0_4"/>
    <dbReference type="OMA" id="VAGEGCQ"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009055">
        <property type="term" value="F:electron transfer activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0050660">
        <property type="term" value="F:flavin adenine dinucleotide binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd01715">
        <property type="entry name" value="ETF_alpha"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.620">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029035">
        <property type="entry name" value="DHS-like_NAD/FAD-binding_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014730">
        <property type="entry name" value="ETF_a/b_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001308">
        <property type="entry name" value="ETF_a/FixB"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR033947">
        <property type="entry name" value="ETF_alpha_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014731">
        <property type="entry name" value="ETF_asu_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018206">
        <property type="entry name" value="ETF_asu_C_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014729">
        <property type="entry name" value="Rossmann-like_a/b/a_fold"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43153">
        <property type="entry name" value="PTHR43153"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01012">
        <property type="entry name" value="ETF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00766">
        <property type="entry name" value="ETF_alpha"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF000089">
        <property type="entry name" value="Electra_flavoP_a"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00893">
        <property type="entry name" value="ETF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52467">
        <property type="entry name" value="SSF52467"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00696">
        <property type="entry name" value="ETF_ALPHA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-0249">Electron transport</keyword>
    <keyword evidence="4" id="KW-0274">FAD</keyword>
    <keyword evidence="3" id="KW-0285">Flavoprotein</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0813">Transport</keyword>
    <feature type="domain" description="ETF" evidence="6">
        <location>
            <begin position="3"/>
            <end position="182"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00005817"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022448"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022630"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022827"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022982"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="SMART" id="SM00893"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="ABX35029.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="310" mass="31262" checksum="52F4ED31FE1B506C" modified="2008-01-15" version="1">MTSLVIAEHDNASIKSATLNTVTAALACGGDVHVLVAGENAGAAAQAAAQIAGVSKVIHADGASLKDGLAENIAAQVLAIASNYSHILFPATASGKNAAPRVAAKLDVAQISDITKVDSADTFERPIYAGNAIATVQSGDKIKVITVRGTGFDAAATTGGSAQVEQLAAAGDNGKSSFVGREVTKNDRPELTAAKIIVSGGRALGSSEKFQEVITPLADKLGAAIGASRAAVDAGYAPNDLQVGQTGKIVAPQLYIALGISGAIQHLAGMKDSKVIVAINKDPEAPIFSVADYGLEADLFQAVPELVQAL</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="49" xmlns="http://uniprot.org/uniprot">
    <accession>A9BVL7</accession>
    <name>A9BVL7_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Conserved hypothetical membrane protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Daci_2446</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="4" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX35084.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012204366.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_2446"/>
    <dbReference type="PRIDE" id="A9BVL7"/>
    <dbReference type="EnsemblBacteria" id="ABX35084">
        <property type="protein sequence ID" value="ABX35084"/>
        <property type="gene ID" value="Daci_2446"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_2446"/>
    <dbReference type="eggNOG" id="COG4929">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_501222_0_0_4"/>
    <dbReference type="OMA" id="YQLAWPL"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025513">
        <property type="entry name" value="DUF4401"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025833">
        <property type="entry name" value="GDYXXLXY"/>
    </dbReference>
    <dbReference type="Pfam" id="PF14351">
        <property type="entry name" value="DUF4401"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF14345">
        <property type="entry name" value="GDYXXLXY"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="35"/>
            <end position="61"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="67"/>
            <end position="85"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="97"/>
            <end position="114"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="120"/>
            <end position="137"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="144"/>
            <end position="160"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="166"/>
            <end position="190"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="211"/>
            <end position="233"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="253"/>
            <end position="274"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="286"/>
            <end position="313"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="319"/>
            <end position="338"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="350"/>
            <end position="369"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="389"/>
            <end position="410"/>
        </location>
    </feature>
    <feature type="domain" description="DUF4401" evidence="2">
        <location>
            <begin position="34"/>
            <end position="367"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF14351"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ABX35084.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="551" mass="58440" checksum="56F3D435B4CD2DF4" modified="2008-01-15" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-05-25" version="83" xmlns="http://uniprot.org/uniprot">
    <accession>A9BVR8</accession>
    <name>A9BVR8_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="8">Transport system permease protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="8" type="ordered locus">Daci_2793</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="9" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX35431.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012204641.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_2793"/>
    <dbReference type="EnsemblBacteria" id="ABX35431">
        <property type="protein sequence ID" value="ABX35431"/>
        <property type="gene ID" value="Daci_2793"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_2793"/>
    <dbReference type="eggNOG" id="COG0609">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_013016_0_1_4"/>
    <dbReference type="OMA" id="WLLPGCA"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0022857">
        <property type="term" value="F:transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.3470.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037294">
        <property type="entry name" value="ABC_BtuC-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000522">
        <property type="entry name" value="ABC_transptr_permease_BtuC"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30472">
        <property type="entry name" value="PTHR30472"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01032">
        <property type="entry name" value="FecCD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF81345">
        <property type="entry name" value="SSF81345"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="6 7" id="KW-0472">Membrane</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4 7" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="5 7" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="45"/>
            <end position="65"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="77"/>
            <end position="103"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="109"/>
            <end position="130"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="139"/>
            <end position="158"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="178"/>
            <end position="201"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="270"/>
            <end position="291"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="297"/>
            <end position="315"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00007935"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="ABX35431.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="327" mass="33171" checksum="EFF9002DBF5A1945" modified="2008-01-15" version="1">MALVLLVVSALLMLLGAGVGSTGWESVWAARSDPLSWQIVTEIRLPRTAGAWLAGGLLGLAGAVAQGVFRNPLADPYLLGSASGASLGVALSMAALGASPFALAGLARLGVTGAAFAGAALAVLLTLVLAQGVHNTMRLLLAGVVVGVVLGAAASLVLLMNPDIMQAMQAFMLGSTSFIGWGACALMLAVLLATALGAWCLGRVLDSLSLGEATAHSLGLPLAPLRMVLILLLALATGTAVAQTGLIAFVGLAAPHLVRSMVRSMHRWLLVLSAGMGAVLLLAADLLARWLIAPQELPVGALTALLGGSYLLWLMHRRHALRGGEGA</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="40" xmlns="http://uniprot.org/uniprot">
    <accession>A9BWH1</accession>
    <name>A9BWH1_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Daci_3557</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="2" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX36191.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_3557"/>
    <dbReference type="PRIDE" id="A9BWH1"/>
    <dbReference type="EnsemblBacteria" id="ABX36191">
        <property type="protein sequence ID" value="ABX36191"/>
        <property type="gene ID" value="Daci_3557"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_3557"/>
    <dbReference type="eggNOG" id="ENOG50334TD">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_2192719_0_0_4"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ABX36191.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="108" mass="11414" checksum="FD2EBB1C1D152A2B" modified="2008-01-15" version="1">MRQAEKAITTKYQGALNAARDREALLRRDLVQLRAVSDGLREQSADAAHRLASAPPAAVIEYATALGVVFEDCRAAYGDMAAKAAGHAADVQTLGAAWPVIPNLQAVD</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="62" xmlns="http://uniprot.org/uniprot">
    <accession>A9BWQ9</accession>
    <name>A9BWQ9_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Acriflavin resistance protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_3955</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX36586.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012205780.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_3955"/>
    <dbReference type="PRIDE" id="A9BWQ9"/>
    <dbReference type="EnsemblBacteria" id="ABX36586">
        <property type="protein sequence ID" value="ABX36586"/>
        <property type="gene ID" value="Daci_3955"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_3955"/>
    <dbReference type="eggNOG" id="COG0841">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_002755_1_2_4"/>
    <dbReference type="OMA" id="MNGKQYQ"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="GO" id="GO:0022857">
        <property type="term" value="F:transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.2090.10">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027463">
        <property type="entry name" value="AcrB_DN_DC_subdom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001036">
        <property type="entry name" value="Acrflvin-R"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR32063">
        <property type="entry name" value="PTHR32063"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00873">
        <property type="entry name" value="ACR_tran"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00702">
        <property type="entry name" value="ACRIFLAVINRP"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF82714">
        <property type="entry name" value="SSF82714"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="12"/>
            <end position="29"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="339"/>
            <end position="358"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="365"/>
            <end position="385"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="438"/>
            <end position="462"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="468"/>
            <end position="486"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="545"/>
            <end position="566"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="872"/>
            <end position="890"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="987"/>
            <end position="1006"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="1018"/>
            <end position="1041"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX36586.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="1075" mass="116970" checksum="EEAACBE34D25E3DB" modified="2008-01-15" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="97" xmlns="http://uniprot.org/uniprot">
    <accession>A9BWR4</accession>
    <name>A9BWR4_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">Histidine kinase</fullName>
            <ecNumber evidence="2">2.7.13.3</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="9" type="ordered locus">Daci_3960</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="9 10" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="10" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>ATP + protein L-histidine = ADP + protein N-phospho-L-histidine.</text>
            <dbReference type="EC" id="2.7.13.3"/>
        </reaction>
    </comment>
    <dbReference type="EC" id="2.7.13.3" evidence="2"/>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX36591.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012205785.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_3960"/>
    <dbReference type="PRIDE" id="A9BWR4"/>
    <dbReference type="EnsemblBacteria" id="ABX36591">
        <property type="protein sequence ID" value="ABX36591"/>
        <property type="gene ID" value="Daci_3960"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_3960"/>
    <dbReference type="eggNOG" id="COG2205">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_000445_89_37_4"/>
    <dbReference type="OMA" id="IRIAMRP"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000155">
        <property type="term" value="F:phosphorelay sensor kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd00082">
        <property type="entry name" value="HisKA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.565.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003660">
        <property type="entry name" value="HAMP_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003594">
        <property type="entry name" value="HATPase_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036890">
        <property type="entry name" value="HATPase_C_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005467">
        <property type="entry name" value="His_kinase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003661">
        <property type="entry name" value="HisK_dim/P"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036097">
        <property type="entry name" value="HisK_dim/P_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004358">
        <property type="entry name" value="Sig_transdc_His_kin-like_C"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02518">
        <property type="entry name" value="HATPase_c"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00512">
        <property type="entry name" value="HisKA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00344">
        <property type="entry name" value="BCTRLSENSOR"/>
    </dbReference>
    <dbReference type="SMART" id="SM00387">
        <property type="entry name" value="HATPase_c"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00388">
        <property type="entry name" value="HisKA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47384">
        <property type="entry name" value="SSF47384"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55874">
        <property type="entry name" value="SSF55874"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50885">
        <property type="entry name" value="HAMP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50109">
        <property type="entry name" value="HIS_KIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="5 9" id="KW-0418">Kinase</keyword>
    <keyword evidence="6" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-0597">Phosphoprotein</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4" id="KW-0808">Transferase</keyword>
    <keyword evidence="6" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="6" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="27"/>
            <end position="50"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="178"/>
            <end position="198"/>
        </location>
    </feature>
    <feature type="domain" description="HAMP" evidence="8">
        <location>
            <begin position="199"/>
            <end position="251"/>
        </location>
    </feature>
    <feature type="domain" description="Histidine kinase" evidence="7">
        <location>
            <begin position="259"/>
            <end position="471"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00000085"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00012438"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022553"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022777"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="PROSITE" id="PS50109"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="PROSITE" id="PS50885"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="ABX36591.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="473" mass="52813" checksum="8A10C87ADAF0FB26" modified="2008-01-15" version="1">MTSHTLQGQQASPRWRRWLRPTLGRRMLLAQMGVLTAIWTALLVAAIYMAHFHNELLVSKPVYELVMAVAEDLADLPDRQQHSLAALDTALRHEYGDGDDDIRFTPTLLVWQRGQLLYRSPTPAPTLRNRVLDTVEDIDFEGQTWRMSTLRSASGQTEVTLMLPSFKELLITLNTRSYYLLPLLISLPFLAFPAWWSVRAALRPLRRVGDELATRGPDDLSALTYAPPHAELRPLVQDINALLARVRSSSERERNLIADAAHELRTPLAAMHVNVEALLRLGSEPRQQELMDSLLRSNQRASRMVAQLLQLMRSETEAPGMAMQPLRLDLLLEDRLAALDALACRRPVELALEASEPLSVMGEREGLVSLIDNLVDNAIKYSPAHATISVRLQRQGDQAVLQVRDRGPGIAEAWRQRVFDRFFRVPDQSQSGSGLGLAIARTVTERHGGSIELLSVEDGGLLASVSLPVLQEG</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-01-19" version="89" xmlns="http://uniprot.org/uniprot">
    <accession>A9BX35</accession>
    <name>A9BX35_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="9">Polar amino acid ABC transporter, inner membrane subunit</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="9" type="ordered locus">Daci_4389</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="9 10" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="10" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="7">Cell membrane</location>
            <topology evidence="7">Multi-pass membrane protein</topology>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the binding-protein-dependent transport system permease family. HisMQ subfamily.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX37020.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012206192.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_4389"/>
    <dbReference type="EnsemblBacteria" id="ABX37020">
        <property type="protein sequence ID" value="ABX37020"/>
        <property type="gene ID" value="Daci_4389"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_4389"/>
    <dbReference type="eggNOG" id="COG0765">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_019602_1_0_4"/>
    <dbReference type="OMA" id="IGRGQWQ"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043190">
        <property type="term" value="C:ATP-binding cassette (ABC) transporter complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0022857">
        <property type="term" value="F:transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006865">
        <property type="term" value="P:amino acid transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd06261">
        <property type="entry name" value="TM_PBP2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.3720.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010065">
        <property type="entry name" value="AA_ABC_transptr_permease_3TM"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043429">
        <property type="entry name" value="ArtM/GltK/GlnP/TcyL/YhdX-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000515">
        <property type="entry name" value="MetI-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035906">
        <property type="entry name" value="MetI-like_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30614">
        <property type="entry name" value="PTHR30614"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00528">
        <property type="entry name" value="BPD_transp_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF161098">
        <property type="entry name" value="SSF161098"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01726">
        <property type="entry name" value="HEQRo_perm_3TM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50928">
        <property type="entry name" value="ABC_TM1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-0029">Amino-acid transport</keyword>
    <keyword evidence="6 7" id="KW-0472">Membrane</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 7" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="5 7" id="KW-1133">Transmembrane helix</keyword>
    <keyword evidence="7" id="KW-0813">Transport</keyword>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="20"/>
            <end position="43"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="63"/>
            <end position="92"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="112"/>
            <end position="133"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="139"/>
            <end position="158"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="195"/>
            <end position="217"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="237"/>
            <end position="254"/>
        </location>
    </feature>
    <feature type="domain" description="ABC transmembrane type-1" evidence="8">
        <location>
            <begin position="66"/>
            <end position="258"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00010072"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022970"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="RuleBase" id="RU363032"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="PROSITE" id="PS50928"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="ABX37020.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="266" mass="28877" checksum="1C4908EE6FAD3367" modified="2008-01-15" version="1">MSRSLEDILFGAPSPQARKITQAVSLIAAAGLIALAAGVVWRFHSAGQLEARFWEFFAWPTTWAFLAKGLLGTLASSAMAAVIALSLGLVLLAGRLARPRIVRWPSIAVIEFLRGTPTLLLIYVCFLVLPAAGIKLGTYWMLTLPIGLSTAAVVAEVYRAGVLAVPRGQTDAARSLGLTEVQVFRFVVFPQALRYIVPALVAQLVIVVKDTTFGYIVTYGELMQNAKVLIANYHALVPVYLVVAVLYCLVNYAISRASRRLNRPVH</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="62" xmlns="http://uniprot.org/uniprot">
    <accession>A9BX37</accession>
    <name>A9BX37_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Diguanylate cyclase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Daci_4391</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="4" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX37022.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012206194.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_4391"/>
    <dbReference type="PRIDE" id="A9BX37"/>
    <dbReference type="EnsemblBacteria" id="ABX37022">
        <property type="protein sequence ID" value="ABX37022"/>
        <property type="gene ID" value="Daci_4391"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_4391"/>
    <dbReference type="eggNOG" id="COG2199">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_000445_11_1_4"/>
    <dbReference type="OMA" id="IGIWFAN"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd01949">
        <property type="entry name" value="GGDEF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.70.270">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000160">
        <property type="entry name" value="GGDEF_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029787">
        <property type="entry name" value="Nucleotide_cyclase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043128">
        <property type="entry name" value="Rev_trsase/Diguanyl_cyclase"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00990">
        <property type="entry name" value="GGDEF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00267">
        <property type="entry name" value="GGDEF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55073">
        <property type="entry name" value="SSF55073"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00254">
        <property type="entry name" value="GGDEF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50887">
        <property type="entry name" value="GGDEF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="6"/>
            <end position="23"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="35"/>
            <end position="54"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="60"/>
            <end position="86"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="93"/>
            <end position="112"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="118"/>
            <end position="136"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="143"/>
            <end position="162"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="182"/>
            <end position="201"/>
        </location>
    </feature>
    <feature type="domain" description="GGDEF" evidence="2">
        <location>
            <begin position="248"/>
            <end position="381"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS50887"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ABX37022.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="387" mass="42229" checksum="0A2121BAE323EA34" modified="2008-01-15" version="1">MVLDPFTLLVLTTAMAAASALYLAAEWGSVRERSLLLWSGGFAIIAVGCVLALLRSSGHMLLGIWFPNGLLICAHWLFLAGVAAFTHTRLPRLWWLVAVVWLAMLFLPSGPWWSRAMLGMQSLLIAVISLRASLLLRPHGGTLGVGAAQLRFVLLVHGLFYFTKAASAVALDTFINLANFHGTVILVSLVEGVMAIMLLAMSMTGTERHRREERIAQIAARDPLTALDNRRALYLRAPQLLEQASAASPCALLLIDIDHFKQVNDLHGHDAGDRLLLTLSDLIRSALPRGALAARLGGDEFVIVLRSVDHAAAQALGQDLREAFAQQARTLFETPEPVSLSIGATLFDQPGVELSHWLKQADEALYTSKRKGRDRMELVPLAPGRPH</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="65" xmlns="http://uniprot.org/uniprot">
    <accession>A9BXI9</accession>
    <name>A9BXI9_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Glyoxalase/bleomycin resistance protein/dioxygenase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_5636</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX38265.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012207434.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_5636"/>
    <dbReference type="PRIDE" id="A9BXI9"/>
    <dbReference type="EnsemblBacteria" id="ABX38265">
        <property type="protein sequence ID" value="ABX38265"/>
        <property type="gene ID" value="Daci_5636"/>
    </dbReference>
    <dbReference type="GeneID" id="60690006"/>
    <dbReference type="KEGG" id="dac:Daci_5636"/>
    <dbReference type="eggNOG" id="COG3565">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_109157_0_1_4"/>
    <dbReference type="OMA" id="QWTMFFC"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051213">
        <property type="term" value="F:dioxygenase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.10.180.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029068">
        <property type="entry name" value="Glyas_Bleomycin-R_OHBP_Dase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004360">
        <property type="entry name" value="Glyas_Fos-R_dOase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037523">
        <property type="entry name" value="VOC"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00903">
        <property type="entry name" value="Glyoxalase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54593">
        <property type="entry name" value="SSF54593"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51819">
        <property type="entry name" value="VOC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0223">Dioxygenase</keyword>
    <keyword evidence="2" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="VOC" evidence="1">
        <location>
            <begin position="3"/>
            <end position="128"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS51819"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX38265.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="137" mass="15272" checksum="053FB5573E4CD755" modified="2008-01-15" version="1">MRTSFHLAYHVRDLDEARAFYGTLLGCQEGRSTETWVDFDFFGHQISLHLGEPFPVTNTGRVGDHMVPMPHLGLVMAMDDWKALAARLSGGVVDFVLQPGIRFEGEPGEQATMFFRDPSGNPIEVKGFADLDKVFAK</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="78" xmlns="http://uniprot.org/uniprot">
    <accession>A9BXL1</accession>
    <name>A9BXL1_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Transcriptional regulator, TetR family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Daci_5659</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="4" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX38287.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012207456.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_5659"/>
    <dbReference type="PRIDE" id="A9BXL1"/>
    <dbReference type="EnsemblBacteria" id="ABX38287">
        <property type="protein sequence ID" value="ABX38287"/>
        <property type="gene ID" value="Daci_5659"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_5659"/>
    <dbReference type="eggNOG" id="COG1309">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_069356_23_1_4"/>
    <dbReference type="OMA" id="WFGQPDF"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009057">
        <property type="entry name" value="Homeobox-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001647">
        <property type="entry name" value="HTH_TetR"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036271">
        <property type="entry name" value="Tet_transcr_reg_TetR-rel_C_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00440">
        <property type="entry name" value="TetR_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00455">
        <property type="entry name" value="HTHTETR"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46689">
        <property type="entry name" value="SSF46689"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48498">
        <property type="entry name" value="SSF48498"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50977">
        <property type="entry name" value="HTH_TETR_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HTH tetR-type" evidence="2">
        <location>
            <begin position="11"/>
            <end position="71"/>
        </location>
    </feature>
    <feature type="DNA-binding region" description="H-T-H motif" evidence="1">
        <location>
            <begin position="34"/>
            <end position="53"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00335"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS50977"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ABX38287.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="194" mass="21375" checksum="B4DBDF99485EF810" modified="2008-01-15" version="1">MKTSQPSFESLPPRERILVAAHGLFYAEGIRATGVDRIIERSSVSKVTFYRQYASKDDLIRAYLDYRHERWISWFQASLAQANDAGSPALEALATTLRSWFGQPDFRGCAFLNAAAELGSSDPEILATVRRHKQEMSSVLDRLFGGHPVSVGAALTLVADGAIVHAQMGQPIDEVMENFKSAAEGVVDRPLPLR</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="73" xmlns="http://uniprot.org/uniprot">
    <accession>A9BY21</accession>
    <name>A9BY21_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="5">PpiC-type peptidyl-prolyl cis-trans isomerase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ordered locus">Daci_1312</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="6" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX33956.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_1312"/>
    <dbReference type="PRIDE" id="A9BY21"/>
    <dbReference type="EnsemblBacteria" id="ABX33956">
        <property type="protein sequence ID" value="ABX33956"/>
        <property type="gene ID" value="Daci_1312"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_1312"/>
    <dbReference type="eggNOG" id="COG0760">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_034646_1_2_4"/>
    <dbReference type="OMA" id="DAHPHDY"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003755">
        <property type="term" value="F:peptidyl-prolyl cis-trans isomerase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.10.50.40">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR046357">
        <property type="entry name" value="PPIase_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000297">
        <property type="entry name" value="PPIase_PpiC"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023058">
        <property type="entry name" value="PPIase_PpiC_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027304">
        <property type="entry name" value="Trigger_fact/SurA_dom_sf"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF109998">
        <property type="entry name" value="SSF109998"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01096">
        <property type="entry name" value="PPIC_PPIASE_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50198">
        <property type="entry name" value="PPIC_PPIASE_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1 2 5" id="KW-0413">Isomerase</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0697">Rotamase</keyword>
    <keyword evidence="3" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="3">
        <location>
            <begin position="1"/>
            <end position="31"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5007909807" evidence="3">
        <location>
            <begin position="32"/>
            <end position="311"/>
        </location>
    </feature>
    <feature type="domain" description="PpiC" evidence="4">
        <location>
            <begin position="155"/>
            <end position="250"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023235"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00278"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="PROSITE" id="PS50198"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="ABX33956.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="311" mass="32989" checksum="965CCA76305C9C30" modified="2008-01-15" version="1">MDMTMQFPLSRHTLRQGFLSLALCTPVLALAAQPAAGQPAAVLASGAGVSVTVDDLQADAQRIPPEVRAGLLARPQNVSQIADNLLVRRVMAQKAQAQGLGNNAVAQAALNVARDKILSDAWLAKIDADNTPSAAAAEGQARNIYKAHPERFAVEEQVHVRHILIAGTDDAARAQAEKLVAELRGGADFAALAKERSADKGSAARGGDLGFFGKDKMVPEFEQAAFALKKNEISGAVQSKFGFHVLQLLDRKPAGQQSFSEVREALVKEVIEQAQAEGRVAAANAIRKEFKVDEAAVQAYSQSQAAQPKAQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="69" xmlns="http://uniprot.org/uniprot">
    <accession>A9BYH0</accession>
    <name>A9BYH0_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Response regulator receiver protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Daci_1873</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="4" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX34513.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012203798.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_1873"/>
    <dbReference type="PRIDE" id="A9BYH0"/>
    <dbReference type="EnsemblBacteria" id="ABX34513">
        <property type="protein sequence ID" value="ABX34513"/>
        <property type="gene ID" value="Daci_1873"/>
    </dbReference>
    <dbReference type="GeneID" id="60686303"/>
    <dbReference type="KEGG" id="dac:Daci_1873"/>
    <dbReference type="eggNOG" id="COG0745">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_000445_69_17_4"/>
    <dbReference type="OMA" id="DKVWGER"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000160">
        <property type="term" value="P:phosphorelay signal transduction system"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011006">
        <property type="entry name" value="CheY-like_superfamily"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001789">
        <property type="entry name" value="Sig_transdc_resp-reg_receiver"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR039420">
        <property type="entry name" value="WalR-like"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR48111">
        <property type="entry name" value="PTHR48111"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00072">
        <property type="entry name" value="Response_reg"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00448">
        <property type="entry name" value="REC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52172">
        <property type="entry name" value="SSF52172"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50110">
        <property type="entry name" value="RESPONSE_REGULATORY"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0597">Phosphoprotein</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Response regulatory" evidence="2">
        <location>
            <begin position="3"/>
            <end position="120"/>
        </location>
    </feature>
    <feature type="modified residue" description="4-aspartylphosphate" evidence="1">
        <location>
            <position position="52"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00169"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS50110"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ABX34513.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="123" mass="13793" checksum="5DA60329D5AE41CA" modified="2008-01-15" version="1">MKKILIAEDQADIRKLLRMTLESSAYEVMEAPTGDEAWALAQRSQPDVVLLDMMMPGTLDGLEVCCRIKTSYDLRHTRVILLTARGSAQDREAGFNAGADEYLLKPFSPNRLLETLASLYRSD</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="59" xmlns="http://uniprot.org/uniprot">
    <accession>A9BYL3</accession>
    <name>A9BYL3_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="1">RecT protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Daci_1916</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="2" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX34556.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012203841.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_1916"/>
    <dbReference type="PRIDE" id="A9BYL3"/>
    <dbReference type="EnsemblBacteria" id="ABX34556">
        <property type="protein sequence ID" value="ABX34556"/>
        <property type="gene ID" value="Daci_1916"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_1916"/>
    <dbReference type="eggNOG" id="COG3723">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_065145_0_0_4"/>
    <dbReference type="OMA" id="MSNIVEF"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006259">
        <property type="term" value="P:DNA metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018330">
        <property type="entry name" value="RecT_fam"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004590">
        <property type="entry name" value="ssDNA_annealing_RecT"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03837">
        <property type="entry name" value="RecT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00616">
        <property type="entry name" value="rect"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ABX34556.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="307" mass="33770" checksum="669A35093A4C4802" modified="2008-01-15" version="1">MSAIQTISNFVYGAEDSFHSVLVDRSINFEREAGFAIQVLTAGDYIAKLAANDRQSVVNAVTNIAAIGISLNPAKKQAYLVPRKGKICLDISYMGLIDLAVQAGSILWAQADLVYASDAFTLNGFDRPPTHSYNPFSRERGELVGAYVVVKTPSGDYLTDCMSREEIDAIKNRSESVKAGKSSPWDTDYGEMAKKTVVKRAYKYWPKSDRLDQAIHHLNTEGGEGLATAQPARSAAIDPQPIIEGLRQTKTIEELKAYWAEQNGRLANDLSAHNELKDAYRAHLARIRAETAKNVTDVEDKNAVDQS</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="64" xmlns="http://uniprot.org/uniprot">
    <accession>A9BZ40</accession>
    <name>A9BZ40_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Daci_2502</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="2" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX35140.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012204421.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_2502"/>
    <dbReference type="PRIDE" id="A9BZ40"/>
    <dbReference type="EnsemblBacteria" id="ABX35140">
        <property type="protein sequence ID" value="ABX35140"/>
        <property type="gene ID" value="Daci_2502"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_2502"/>
    <dbReference type="eggNOG" id="COG3228">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_063037_0_1_4"/>
    <dbReference type="OMA" id="EHSGEAW"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008237">
        <property type="term" value="F:metallopeptidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006508">
        <property type="term" value="P:proteolysis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="CDD" id="cd20169">
        <property type="entry name" value="Peptidase_M90_mtfA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.472.150">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.390.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR024079">
        <property type="entry name" value="MetalloPept_cat_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010384">
        <property type="entry name" value="MtfA_fam"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR042252">
        <property type="entry name" value="MtfA_N"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30164">
        <property type="entry name" value="PTHR30164"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF06167">
        <property type="entry name" value="Peptidase_M90"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ABX35140.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="289" mass="31459" checksum="10F49E815462F7EE" modified="2008-01-15" version="1">MSLWQQMGSWVRRLGRRARSTVSPVPEIPAPLWLSTLAAYPFLASLTLEEQSKLRALAAVFLQRKRFHGAHGLQVSDAMALEIAAQACLPLLHWGEPQGALSWYDDFVGIVVHPGDAVARRQSMDEAGVIHDYDEVIMGEAMHGGPVMLSWQAIGAGRGSHASHHGHGGQPANVVIHEFAHKIDMRNGGADGCPPLPPGFMGSSSARQAREIWQAAWAPAYDAFREQITIAERFGGEWPWLDGYGATAPAEFFAVACEAFFVDRARFALEFPTLAPLLAALFKPATSQP</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="32" xmlns="http://uniprot.org/uniprot">
    <accession>A9BZ64</accession>
    <name>A9BZ64_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_2526</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX35164.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="PRIDE" id="A9BZ64"/>
    <dbReference type="EnsemblBacteria" id="ABX35164">
        <property type="protein sequence ID" value="ABX35164"/>
        <property type="gene ID" value="Daci_2526"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_2526"/>
    <dbReference type="HOGENOM" id="CLU_2000173_0_0_4"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="37"/>
            <end position="54"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="61"/>
            <end position="78"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="84"/>
            <end position="103"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX35164.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="124" mass="14379" checksum="4F9AAA2C01F874C1" modified="2008-01-15" version="1">MKSMRSKLLADAIGLIFFLALPMPAFAFATDVVLYYFWAIFFVFLICIVGSIYLHSTRKAIYASIWLISVFSSVYCEVPRNIKMLVTIYLLISPIIILVLIFCRSNNKQQNEREKITPDKDREK</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2021-06-02" version="42" xmlns="http://uniprot.org/uniprot">
    <accession>A9BZD5</accession>
    <name>A9BZD5_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Daci_2897</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="2" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX35535.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012204745.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="ABX35535">
        <property type="protein sequence ID" value="ABX35535"/>
        <property type="gene ID" value="Daci_2897"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_2897"/>
    <dbReference type="eggNOG" id="ENOG50334YF">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_2011525_0_0_4"/>
    <dbReference type="OMA" id="GWPITHS"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ABX35535.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="119" mass="12260" checksum="C6938E590FC842E5" modified="2008-01-15" version="1">MHTLRTSSFWKRLALAWFLLTLGVAGASPFVNPKTMELICSSGGAITMVVLDDDGQAQAPVQHTLDCSMCLAPALPLPPVSLAVAQPHPLAAALHPFAAAHIAALVGAPLPPRGPPAQA</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="72" xmlns="http://uniprot.org/uniprot">
    <accession>A9BZE3</accession>
    <name>A9BZE3_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Monooxygenase FAD-binding</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_2905</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX35543.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012204753.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_2905"/>
    <dbReference type="PRIDE" id="A9BZE3"/>
    <dbReference type="EnsemblBacteria" id="ABX35543">
        <property type="protein sequence ID" value="ABX35543"/>
        <property type="gene ID" value="Daci_2905"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_2905"/>
    <dbReference type="eggNOG" id="COG0654">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_009665_19_5_4"/>
    <dbReference type="OMA" id="RHVMTYT"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0071949">
        <property type="term" value="F:FAD binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004497">
        <property type="term" value="F:monooxygenase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.50.50.60">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002938">
        <property type="entry name" value="FAD-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036188">
        <property type="entry name" value="FAD/NAD-bd_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01494">
        <property type="entry name" value="FAD_binding_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51905">
        <property type="entry name" value="SSF51905"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0503">Monooxygenase</keyword>
    <keyword evidence="2" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="FAD_binding_3" evidence="1">
        <location>
            <begin position="6"/>
            <end position="347"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF01494"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX35543.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="381" mass="40945" checksum="BFE89CC11D1E598D" modified="2008-01-15" version="1">MARLRIGIVGAGIGGLAAANALHQAGHEVLVFEQSRQFLRVGADINLTPNAVRALDGLGADIAAAVRASAARPTHRISRNWDTGEETSRLTMGDEAERKYGAPQLTIHRADLLAALADAFPLDQVQLGKRASQITQTGQGVDIAFTDGSEVAGLDALIGADGIHSVVRAALFGAESPRFTGVVAFRAVVPTERVRHVPDIQAFTKWWGATPQSQIVTFPLNQGRDTFIFATTAQDSWHEESWTTPGSVEELRGFYADFHPDARALLDACDGVLKTALYERDPLPAWSQDRITLLGDACHPMMPFMAQGAGMAIEDAVVLARNLDAAPGPQQVPEVLARYQAMRMQRTSEIQIGSRGNNWLRAGGNADGVYGYDAWAVALQA</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="55" xmlns="http://uniprot.org/uniprot">
    <accession>A9BZE5</accession>
    <name>A9BZE5_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Daci_2907</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="4" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX35545.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012204755.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_2907"/>
    <dbReference type="PRIDE" id="A9BZE5"/>
    <dbReference type="EnsemblBacteria" id="ABX35545">
        <property type="protein sequence ID" value="ABX35545"/>
        <property type="gene ID" value="Daci_2907"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_2907"/>
    <dbReference type="eggNOG" id="COG5569">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_140852_0_1_4"/>
    <dbReference type="OMA" id="VTRWDAR"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.50.320">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR021647">
        <property type="entry name" value="CusF_Ec"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR042230">
        <property type="entry name" value="CusF_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF11604">
        <property type="entry name" value="CusF_Ec"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="2">
        <location>
            <begin position="1"/>
            <end position="34"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5002736178" evidence="2">
        <location>
            <begin position="35"/>
            <end position="133"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="44"/>
            <end position="67"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ABX35545.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="133" mass="14217" checksum="C27D89804DA86189" modified="2008-01-15" version="1">MHNTALLVSRTSRTARTSLAVRLALAAALIPAWAGAQATAHDHAAHGAQSAETAPAAVSQDLSEGEVTRWDARTSKVTLRHGELKNLGMPPMTMVFQLRVAAPEPALKAGDKVRFRAEQDQGAFVVTQLEVLR</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="47" xmlns="http://uniprot.org/uniprot">
    <accession>A9BZF0</accession>
    <name>A9BZF0_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Daci_2912</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="4" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX35550.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_2912"/>
    <dbReference type="PRIDE" id="A9BZF0"/>
    <dbReference type="EnsemblBacteria" id="ABX35550">
        <property type="protein sequence ID" value="ABX35550"/>
        <property type="gene ID" value="Daci_2912"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_2912"/>
    <dbReference type="eggNOG" id="ENOG5033I0Z">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_2103705_0_0_4"/>
    <dbReference type="OMA" id="GWKAANT"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="2">
        <location>
            <begin position="1"/>
            <end position="38"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5002732687" evidence="2">
        <location>
            <begin position="39"/>
            <end position="130"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="109"/>
            <end position="130"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ABX35550.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="130" mass="13576" checksum="85FA271DE22A0DD2" modified="2008-01-15" version="1">MRCPFRIQENTMRRAHFLVPLIQFGLAALAASSPAAWAQAHDGSLPTASSSAGLTGAIDPAAASLPLRHAALPASGAVETELTDWRQANAAVAEFPNGHMDILRWEAAQGGRSTPAPSPHGSHMQHGGRP</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="65" xmlns="http://uniprot.org/uniprot">
    <accession>A9BZK4</accession>
    <name>A9BZK4_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="1">L-carnitine dehydratase/bile acid-inducible protein F</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Daci_2966</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="2" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX35604.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012204814.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_2966"/>
    <dbReference type="PRIDE" id="A9BZK4"/>
    <dbReference type="EnsemblBacteria" id="ABX35604">
        <property type="protein sequence ID" value="ABX35604"/>
        <property type="gene ID" value="Daci_2966"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_2966"/>
    <dbReference type="eggNOG" id="COG1804">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_033975_2_1_4"/>
    <dbReference type="OMA" id="EPVGHGR"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003824">
        <property type="term" value="F:catalytic activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.1540.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.10540">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003673">
        <property type="entry name" value="CoA-Trfase_fam_III"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR044855">
        <property type="entry name" value="CoA-Trfase_III_dom3_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023606">
        <property type="entry name" value="CoA-Trfase_III_dom_1_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02515">
        <property type="entry name" value="CoA_transf_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF89796">
        <property type="entry name" value="SSF89796"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ABX35604.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="415" mass="45037" checksum="16E3FBDA0388A547" modified="2008-01-15" version="1">MSQPNSPDTASGQATPLPYAGIRVVEFTHMVMGPSCGMMLADLGAEVIKIEPVGHGRDGDATRKLLGSGSGFFPLFNRNKKSLTLDLQTEEGKQAALRLIATADVVCENFKPGTMRKLGLDYDSLKDRFERLIYVSHKGFLPGPYEHRTALDEVVQMMGGLAYMTGRPGDPLRAGASVNDIMGGMFGAMGAMAALAQREKTGRGQEVQSALFENNIFLVAQHMMQFAVTGKPAAPMPARISAWAIYDVFEVRDGEQIFLAVVSDGAWRLFCDAFGLGELRDDPRLGSNNDRVLARSWLMPLLREKMSPHSAAHIAEIFEKNGLPFAPIARPQDLLEDPHLNATGALAPITLPDGRETKTVLLPFTLDGKRLDVRLSPPRLGEHSLEILTALGYSSEQALALARGDTTDSHAKASH</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="82" xmlns="http://uniprot.org/uniprot">
    <accession>A9BZM1</accession>
    <name>A9BZM1_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="4 6">Thiazole synthase</fullName>
            <ecNumber evidence="4 6">2.8.1.10</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="6" type="primary">thiG</name>
        <name evidence="9" type="ordered locus">Daci_3291</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="9 10" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="10" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="2 6">Catalyzes the rearrangement of 1-deoxy-D-xylulose 5-phosphate (DXP) to produce the thiazole phosphate moiety of thiamine. Sulfur is provided by the thiocarboxylate moiety of the carrier protein ThiS. In vitro, sulfur can be provided by H(2)S.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1 6">
            <text>1-deoxy-D-xylulose 5-phosphate + 2-iminoacetate + [sulfur-carrier protein ThiS]-C-terminal Gly-NH-CH2-C(O)SH = 2-[(2R,5Z)-2-carboxy-4-methylthiazol-5(2H)-ylidene]ethyl phosphate + [sulfur-carrier protein ThiS]-C-terminal Gly-Gly + 2 H(+) + 2 H2O</text>
            <dbReference type="Rhea" id="RHEA:26297"/>
            <dbReference type="Rhea" id="RHEA-COMP:12908"/>
            <dbReference type="Rhea" id="RHEA-COMP:12909"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:57792"/>
            <dbReference type="ChEBI" id="CHEBI:62899"/>
            <dbReference type="ChEBI" id="CHEBI:77846"/>
            <dbReference type="ChEBI" id="CHEBI:90619"/>
            <dbReference type="ChEBI" id="CHEBI:90778"/>
            <dbReference type="EC" id="2.8.1.10"/>
        </reaction>
    </comment>
    <comment type="pathway">
        <text evidence="3 6">Cofactor biosynthesis; thiamine diphosphate biosynthesis.</text>
    </comment>
    <comment type="subunit">
        <text evidence="6">Homotetramer. Forms heterodimers with either ThiH or ThiS.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="6">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="6">Belongs to the ThiG family.</text>
    </comment>
    <dbReference type="EC" id="2.8.1.10" evidence="4 6"/>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX35929.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_3291"/>
    <dbReference type="PRIDE" id="A9BZM1"/>
    <dbReference type="EnsemblBacteria" id="ABX35929">
        <property type="protein sequence ID" value="ABX35929"/>
        <property type="gene ID" value="Daci_3291"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_3291"/>
    <dbReference type="eggNOG" id="COG2022">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_062233_1_0_4"/>
    <dbReference type="OMA" id="PHNFQLI"/>
    <dbReference type="UniPathway" id="UPA00060"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:1990107">
        <property type="term" value="F:thiazole synthase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="RHEA"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009229">
        <property type="term" value="P:thiamine diphosphate biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniPathway"/>
    </dbReference>
    <dbReference type="CDD" id="cd04728">
        <property type="entry name" value="ThiG"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.20.20.70">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00443">
        <property type="entry name" value="ThiG"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013785">
        <property type="entry name" value="Aldolase_TIM"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR033983">
        <property type="entry name" value="Thiazole_synthase_ThiG"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008867">
        <property type="entry name" value="ThiG"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR34266">
        <property type="entry name" value="PTHR34266"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF05690">
        <property type="entry name" value="ThiG"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="6" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="6" id="KW-0704">Schiff base</keyword>
    <keyword evidence="5 6" id="KW-0784">Thiamine biosynthesis</keyword>
    <keyword evidence="6" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="ThiG" evidence="8">
        <location>
            <begin position="25"/>
            <end position="270"/>
        </location>
    </feature>
    <feature type="region of interest" description="DXP binding" evidence="6">
        <location>
            <begin position="205"/>
            <end position="206"/>
        </location>
    </feature>
    <feature type="region of interest" description="DXP binding" evidence="6">
        <location>
            <begin position="227"/>
            <end position="228"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="7">
        <location>
            <begin position="260"/>
            <end position="280"/>
        </location>
    </feature>
    <feature type="active site" description="Schiff-base intermediate with DXP" evidence="6">
        <location>
            <position position="118"/>
        </location>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <position position="179"/>
        </location>
        <ligand>
            <name>1-deoxy-D-xylulose 5-phosphate</name>
            <dbReference type="ChEBI" id="CHEBI:57792"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00000887"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00002834"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00004948"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00011960"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022977"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00443"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="Pfam" id="PF05690"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="ABX35929.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="280" mass="29964" checksum="4B9344CD5779EA25" modified="2008-01-15" version="1">MPHPTLPLPHAMTTSASSSDDSLVLYGQRFDSRLLLGTSRYPSPAVLEAAVQRARPAMVTASLRRQGSNAAETGASFWELLRKLNVPVLPNTAGCMTVQEAVTTAQMAREVFETPWIKLELIGDDYTLQPDTLNLVEAASILIKDGFQVLPYTTEDLVLCQRLVDVGCQAVMPWAAPIGTGRGPVNPYAMQTLRERLKVPLIVDAGLGRPSHACQVMEWGYDAVLLNTAVALSEDPVAMAGAFADAVNAGHAAHRAGAMAEQSAAQPSTPVLGTPFWHHG</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="66" xmlns="http://uniprot.org/uniprot">
    <accession>A9BZT9</accession>
    <name>A9BZT9_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="7">Methylated-DNA--protein-cysteine methyltransferase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ordered locus">Daci_3359</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="8" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>a 4-O-methyl-thymidine in DNA + L-cysteinyl-[protein] = a thymidine in DNA + S-methyl-L-cysteinyl-[protein]</text>
            <dbReference type="Rhea" id="RHEA:53428"/>
            <dbReference type="Rhea" id="RHEA-COMP:10131"/>
            <dbReference type="Rhea" id="RHEA-COMP:10132"/>
            <dbReference type="Rhea" id="RHEA-COMP:13555"/>
            <dbReference type="Rhea" id="RHEA-COMP:13556"/>
            <dbReference type="ChEBI" id="CHEBI:29950"/>
            <dbReference type="ChEBI" id="CHEBI:82612"/>
            <dbReference type="ChEBI" id="CHEBI:137386"/>
            <dbReference type="ChEBI" id="CHEBI:137387"/>
            <dbReference type="EC" id="2.1.1.63"/>
        </reaction>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="2">
            <text>a 6-O-methyl-2'-deoxyguanosine in DNA + L-cysteinyl-[protein] = a 2'-deoxyguanosine in DNA + S-methyl-L-cysteinyl-[protein]</text>
            <dbReference type="Rhea" id="RHEA:24000"/>
            <dbReference type="Rhea" id="RHEA-COMP:10131"/>
            <dbReference type="Rhea" id="RHEA-COMP:10132"/>
            <dbReference type="Rhea" id="RHEA-COMP:11367"/>
            <dbReference type="Rhea" id="RHEA-COMP:11368"/>
            <dbReference type="ChEBI" id="CHEBI:29950"/>
            <dbReference type="ChEBI" id="CHEBI:82612"/>
            <dbReference type="ChEBI" id="CHEBI:85445"/>
            <dbReference type="ChEBI" id="CHEBI:85448"/>
            <dbReference type="EC" id="2.1.1.63"/>
        </reaction>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX35997.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012205197.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_3359"/>
    <dbReference type="PRIDE" id="A9BZT9"/>
    <dbReference type="EnsemblBacteria" id="ABX35997">
        <property type="protein sequence ID" value="ABX35997"/>
        <property type="gene ID" value="Daci_3359"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_3359"/>
    <dbReference type="eggNOG" id="COG0350">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_000445_52_2_4"/>
    <dbReference type="OMA" id="GTCAIAW"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003908">
        <property type="term" value="F:methylated-DNA-[protein]-cysteine S-methyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006281">
        <property type="term" value="P:DNA repair"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0032259">
        <property type="term" value="P:methylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd06445">
        <property type="entry name" value="ATase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001497">
        <property type="entry name" value="MethylDNA_cys_MeTrfase_AS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014048">
        <property type="entry name" value="MethylDNA_cys_MeTrfase_DNA-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036217">
        <property type="entry name" value="MethylDNA_cys_MeTrfase_DNAb"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01035">
        <property type="entry name" value="DNA_binding_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46767">
        <property type="entry name" value="SSF46767"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00589">
        <property type="entry name" value="ogt"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00374">
        <property type="entry name" value="MGMT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="5" id="KW-0227">DNA damage</keyword>
    <keyword evidence="5" id="KW-0234">DNA repair</keyword>
    <keyword evidence="3 7" id="KW-0489">Methyltransferase</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4 7" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="DNA_binding_1" evidence="6">
        <location>
            <begin position="146"/>
            <end position="227"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001286"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00001596"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022603"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023204"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="Pfam" id="PF01035"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="ABX35997.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="239" mass="24910" checksum="2B93A3E75577238D" modified="2008-01-15" version="1">MKNESTTGSPAWDPEATGHALFATRVGPCGVAWGACGLVAFQLPEVDGPAATRTRMLRGVQLRRPGSYAAAARAEDLPVSVAQAIAGVQVLMAGHGEWTVEPLAPSAQQLRDGPVLPDLRSRRMLPAGEALPDLAGLALDWHGVSDFHRRVYDLTRAIAPGHTRTYGEIARELGEVGLSRAVGQALGLNPFAPVIPCHRVLAAGAQPGGFSGGGGALTKLRMLEIEGAAWGGTRSLFGD</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="42" xmlns="http://uniprot.org/uniprot">
    <accession>A9C039</accession>
    <name>A9C039_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Putative lipoprotein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Daci_3669</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="2" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX36301.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_3669"/>
    <dbReference type="PRIDE" id="A9C039"/>
    <dbReference type="EnsemblBacteria" id="ABX36301">
        <property type="protein sequence ID" value="ABX36301"/>
        <property type="gene ID" value="Daci_3669"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_3669"/>
    <dbReference type="eggNOG" id="ENOG502Z9JN">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_097918_0_0_4"/>
    <dbReference type="OMA" id="IYAIGSM"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0449">Lipoprotein</keyword>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ABX36301.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="265" mass="28814" checksum="C534711A0EF19E28" modified="2008-01-15" version="1">MTIELVLPGEAGRRAGVNDSRPRPGGGAARRLAPVLALLLTAGCADTPAPRGKVEGASFEPGEIVQSDSNRMATLAMKENLDSLMRIMDKLYLRNPAEWKKTAESREAASAYVRIAITERQPWADLHGAQDVAALSLALQPDFKGDRVAAFVHALADTIITAHGGRTSFTLVHGLDPQLIYNAARNVEVANWILNSRRNAAGGPLLLSNHLGDDARNLSFEREMGKIIGRLDLIANYTTERYRRSFIGYGQGLVAGPFMQFLPVR</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-01-19" version="65" xmlns="http://uniprot.org/uniprot">
    <accession>A9C0J0</accession>
    <name>A9C0J0_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="7">Major facilitator superfamily MFS_1</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ordered locus">Daci_4433</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="8" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX37063.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012206235.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_4433"/>
    <dbReference type="EnsemblBacteria" id="ABX37063">
        <property type="protein sequence ID" value="ABX37063"/>
        <property type="gene ID" value="Daci_4433"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_4433"/>
    <dbReference type="eggNOG" id="COG2814">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_001265_47_0_4"/>
    <dbReference type="OMA" id="SHYGWES"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0022857">
        <property type="term" value="F:transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011701">
        <property type="entry name" value="MFS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020846">
        <property type="entry name" value="MFS_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036259">
        <property type="entry name" value="MFS_trans_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07690">
        <property type="entry name" value="MFS_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF103473">
        <property type="entry name" value="SSF103473"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50850">
        <property type="entry name" value="MFS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4 5" id="KW-0472">Membrane</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 5" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="3 5" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="45"/>
            <end position="64"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="76"/>
            <end position="95"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="101"/>
            <end position="122"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="134"/>
            <end position="155"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="161"/>
            <end position="181"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="217"/>
            <end position="240"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="252"/>
            <end position="271"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="346"/>
            <end position="369"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="381"/>
            <end position="403"/>
        </location>
    </feature>
    <feature type="domain" description="MFS" evidence="6">
        <location>
            <begin position="1"/>
            <end position="415"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="PROSITE" id="PS50850"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="ABX37063.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="415" mass="43172" checksum="5A21B59879BE2754" modified="2008-01-15" version="1">MNFADPGPRRSVSFLLLLPLLLAAQPVATDGYLPALPEIARDLGSASSSLTVFMLAFGVAQLVCGPLADRFGRRPVLLTGLACYTAAAAGCALAGSADALVAWRAVQGAAMAAILVCARAAVRDLYPAHEGPRIMARGLTGLGLVALVAPIAGAWGVQATGWRWVLVAMGVYSLALLALCWRTFSETRQAPAESAPVLVPVSVSAGGVRQVIADPGFCAWTALAAATYGGIFCFLLLSPMVYVDLFGLSPVLYGWIPAGGSLVYILGITWCRRLLSRHGPVRTVQLGASLSLLGPCIQIAGCVLAPASPFPLLLGHAVYALGHGLHQPCGQAGAVGGLPPQLAGRAVSCSGFAIMCVAFCAGQLAAQFVDPTMRHGAWPMVLPMALAGVVLVLIAFVWLPWLYRLRSAQRVQPRS</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="64" xmlns="http://uniprot.org/uniprot">
    <accession>A9C0K0</accession>
    <name>A9C0K0_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">4-hydroxyphenylpyruvate dioxygenase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_4443</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX37073.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012206245.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_4443"/>
    <dbReference type="PRIDE" id="A9C0K0"/>
    <dbReference type="EnsemblBacteria" id="ABX37073">
        <property type="protein sequence ID" value="ABX37073"/>
        <property type="gene ID" value="Daci_4443"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_4443"/>
    <dbReference type="eggNOG" id="COG3185">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_034004_1_0_4"/>
    <dbReference type="OMA" id="VIVNAHI"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051213">
        <property type="term" value="F:dioxygenase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.10.180.10">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029068">
        <property type="entry name" value="Glyas_Bleomycin-R_OHBP_Dase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037523">
        <property type="entry name" value="VOC"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54593">
        <property type="entry name" value="SSF54593"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51819">
        <property type="entry name" value="VOC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0223">Dioxygenase</keyword>
    <keyword evidence="2" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="2" id="KW-0670">Pyruvate</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="VOC" evidence="1">
        <location>
            <begin position="20"/>
            <end position="140"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS51819"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX37073.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="294" mass="32498" checksum="B80ED02750E9B8A5" modified="2008-01-15" version="1">MTDSSSSSREDVPEASNRLGIDGIEFIEYTTSQPQALGQVLEGLGFRPVARHRSREVTLYRQGDMNLVVNAGAADALANAASDGQPVISAVALRVQDALQAHTRCIELGAWAAPSQAQAMELHIPAIHGPGGSRFYFVDRWQEFSIYDIDFKPIAGADPHPPALAGLGYFGVVQYIGRGRSADWITYFERMFDFHLLPDAQRFGILPKGKLMRSPCKRFLWQLIEPDPGLEWDDMPERLQRIGLGTTDVPGAVQALRQRGVEFVESSRLHPDDRGALTRNAMGTVVFELVHRDA</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="88" xmlns="http://uniprot.org/uniprot">
    <accession>A9C0T6</accession>
    <name>A9C0T6_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="9">Polar amino acid ABC transporter, inner membrane subunit</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="9" type="ordered locus">Daci_5771</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="9 10" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="10" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="7">Cell membrane</location>
            <topology evidence="7">Multi-pass membrane protein</topology>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the binding-protein-dependent transport system permease family. HisMQ subfamily.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX38399.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012207568.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_5771"/>
    <dbReference type="PRIDE" id="A9C0T6"/>
    <dbReference type="EnsemblBacteria" id="ABX38399">
        <property type="protein sequence ID" value="ABX38399"/>
        <property type="gene ID" value="Daci_5771"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_5771"/>
    <dbReference type="eggNOG" id="COG0765">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_019602_1_1_4"/>
    <dbReference type="OMA" id="EMFAQGK"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043190">
        <property type="term" value="C:ATP-binding cassette (ABC) transporter complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0022857">
        <property type="term" value="F:transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006865">
        <property type="term" value="P:amino acid transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd06261">
        <property type="entry name" value="TM_PBP2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.3720.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010065">
        <property type="entry name" value="AA_ABC_transptr_permease_3TM"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043429">
        <property type="entry name" value="ArtM/GltK/GlnP/TcyL/YhdX-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000515">
        <property type="entry name" value="MetI-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035906">
        <property type="entry name" value="MetI-like_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30614">
        <property type="entry name" value="PTHR30614"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00528">
        <property type="entry name" value="BPD_transp_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF161098">
        <property type="entry name" value="SSF161098"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01726">
        <property type="entry name" value="HEQRo_perm_3TM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50928">
        <property type="entry name" value="ABC_TM1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-0029">Amino-acid transport</keyword>
    <keyword evidence="6 7" id="KW-0472">Membrane</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 7" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="5 7" id="KW-1133">Transmembrane helix</keyword>
    <keyword evidence="7" id="KW-0813">Transport</keyword>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="26"/>
            <end position="45"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="66"/>
            <end position="92"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="104"/>
            <end position="125"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="242"/>
            <end position="260"/>
        </location>
    </feature>
    <feature type="domain" description="ABC transmembrane type-1" evidence="8">
        <location>
            <begin position="66"/>
            <end position="254"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00010072"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022970"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="RuleBase" id="RU363032"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="PROSITE" id="PS50928"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="ABX38399.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="273" mass="29928" checksum="855D3E2CC2D6E082" modified="2008-01-15" version="1">MANEATLNTGGAPRPLPAALLRAARSPWLIAGAALLALCACWAATDSAPPAFVHLWKWLPALLRGLLVNIEISVLAVAIGTVAGLVLGALSLSPTPAVRTGVRWYVQLFRNAPILVLIYFTTYVFPFELKLVGWTFPFPDWVKVVLGLALPTSANVAEIFRGAIQSIPSAQWEAAQSLAFRRSEIFRLIVLPQCVRRMLPPWMNLYASITMSTSLASLVGVHDVVDTAQIASNTVARTDFTILVYFTLLALFFAYCYPIARATRALERRHENH</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="93" xmlns="http://uniprot.org/uniprot">
    <accession>A9C0U6</accession>
    <name>A9C0U6_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Transcriptional regulator, AraC family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Daci_5781</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="4" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX38409.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012207578.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_5781"/>
    <dbReference type="PRIDE" id="A9C0U6"/>
    <dbReference type="EnsemblBacteria" id="ABX38409">
        <property type="protein sequence ID" value="ABX38409"/>
        <property type="gene ID" value="Daci_5781"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_5781"/>
    <dbReference type="eggNOG" id="COG2207">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_000445_88_16_4"/>
    <dbReference type="OMA" id="FAIHTRS"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003700">
        <property type="term" value="F:DNA-binding transcription factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043565">
        <property type="term" value="F:sequence-specific DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003313">
        <property type="entry name" value="AraC-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009057">
        <property type="entry name" value="Homeobox-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037923">
        <property type="entry name" value="HTH-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018060">
        <property type="entry name" value="HTH_AraC"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018062">
        <property type="entry name" value="HTH_AraC-typ_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020449">
        <property type="entry name" value="Tscrpt_reg_HTH_AraC-type"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02311">
        <property type="entry name" value="AraC_binding"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12833">
        <property type="entry name" value="HTH_18"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00032">
        <property type="entry name" value="HTHARAC"/>
    </dbReference>
    <dbReference type="SMART" id="SM00342">
        <property type="entry name" value="HTH_ARAC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46689">
        <property type="entry name" value="SSF46689"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51215">
        <property type="entry name" value="SSF51215"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00041">
        <property type="entry name" value="HTH_ARAC_FAMILY_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01124">
        <property type="entry name" value="HTH_ARAC_FAMILY_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HTH araC/xylS-type" evidence="2">
        <location>
            <begin position="167"/>
            <end position="264"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS01124"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ABX38409.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="267" mass="29386" checksum="8A51623A4350A0BB" modified="2008-01-15" version="1">MAAPLPGKRPQRALTYRRHCALGGVEILSGHAVQHRYPRHFHDTMGIAVIHGGRELCWSRGAEREFTGGDIALFNAGEIHDGRPGGEQGWTYDMLHVEPARMHALLGVRDGWFDAVSLRDPQTRACARQLLQGPQDGLAADEALLALLRRVVHSPGRPHAPDGASAALLREFIDAHADQELGAARLAAVCGLSPEHAIRSFSRRYGITPHAYHQARRAESARGLLRGTLALSEVALSLGFYDQSHFSNWFRRAHGVAPSQYRQAMRP</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="56" xmlns="http://uniprot.org/uniprot">
    <accession>A9C0V3</accession>
    <name>A9C0V3_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Rhodanese domain protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_5788</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX38416.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012207585.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_5788"/>
    <dbReference type="PRIDE" id="A9C0V3"/>
    <dbReference type="EnsemblBacteria" id="ABX38416">
        <property type="protein sequence ID" value="ABX38416"/>
        <property type="gene ID" value="Daci_5788"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_5788"/>
    <dbReference type="eggNOG" id="COG0607">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_089574_10_1_4"/>
    <dbReference type="OMA" id="KFVGHVP"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.250.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001763">
        <property type="entry name" value="Rhodanese-like_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036873">
        <property type="entry name" value="Rhodanese-like_dom_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00581">
        <property type="entry name" value="Rhodanese"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00450">
        <property type="entry name" value="RHOD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52821">
        <property type="entry name" value="SSF52821"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50206">
        <property type="entry name" value="RHODANESE_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Rhodanese" evidence="1">
        <location>
            <begin position="42"/>
            <end position="145"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS50206"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX38416.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="159" mass="17095" checksum="6365ED16C8381EA4" modified="2008-01-15" version="1">MTALTLETALPQALEEAQEHARAQGLGHAGGVRPPVAWALVQAGQAVLVDVRTAEERKFVGQVPGTLHVPWATGTALTRNPRFARELEARLAPHGGKEAVALLLCRSGKRSVLAAQAAAQAGFAHVFNVLEGFEGEIDARQQRGKNDGWRFHGLPWIQD</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="64" xmlns="http://uniprot.org/uniprot">
    <accession>A9C117</accession>
    <name>A9C117_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Methyl-accepting chemotaxis sensory transducer</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ordered locus">Daci_5852</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="6" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX38480.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_5852"/>
    <dbReference type="PRIDE" id="A9C117"/>
    <dbReference type="EnsemblBacteria" id="ABX38480">
        <property type="protein sequence ID" value="ABX38480"/>
        <property type="gene ID" value="Daci_5852"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_5852"/>
    <dbReference type="eggNOG" id="COG0840">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_000445_107_16_4"/>
    <dbReference type="OMA" id="TYTHERE"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004888">
        <property type="term" value="F:transmembrane signaling receptor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006935">
        <property type="term" value="P:chemotaxis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0007165">
        <property type="term" value="P:signal transduction"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004090">
        <property type="entry name" value="Chemotax_Me-accpt_rcpt"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR024478">
        <property type="entry name" value="HlyB_4HB_MCP"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004089">
        <property type="entry name" value="MCPsignal_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12729">
        <property type="entry name" value="4HB_MCP_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00015">
        <property type="entry name" value="MCPsignal"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00260">
        <property type="entry name" value="CHEMTRNSDUCR"/>
    </dbReference>
    <dbReference type="SMART" id="SM00283">
        <property type="entry name" value="MA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50111">
        <property type="entry name" value="CHEMOTAXIS_TRANSDUC_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-0472">Membrane</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0807">Transducer</keyword>
    <keyword evidence="3" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="3" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="3">
        <location>
            <begin position="43"/>
            <end position="65"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="3">
        <location>
            <begin position="228"/>
            <end position="246"/>
        </location>
    </feature>
    <feature type="domain" description="Methyl-accepting transducer" evidence="4">
        <location>
            <begin position="307"/>
            <end position="536"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="564"/>
            <end position="618"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00284"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="PROSITE" id="PS50111"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="ABX38480.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="618" mass="64908" checksum="B0FC109B8BBED94F" modified="2008-01-15" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-01-19" version="68" xmlns="http://uniprot.org/uniprot">
    <accession>A9C120</accession>
    <name>A9C120_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Glutathione S-transferase domain</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Daci_5855</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="4" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX38483.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012207652.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_5855"/>
    <dbReference type="EnsemblBacteria" id="ABX38483">
        <property type="protein sequence ID" value="ABX38483"/>
        <property type="gene ID" value="Daci_5855"/>
    </dbReference>
    <dbReference type="GeneID" id="60690216"/>
    <dbReference type="KEGG" id="dac:Daci_5855"/>
    <dbReference type="eggNOG" id="COG0625">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_011226_6_4_4"/>
    <dbReference type="OMA" id="WATRFEQ"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016740">
        <property type="term" value="F:transferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006749">
        <property type="term" value="P:glutathione metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010987">
        <property type="entry name" value="Glutathione-S-Trfase_C-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036282">
        <property type="entry name" value="Glutathione-S-Trfase_C_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR040079">
        <property type="entry name" value="Glutathione_S-Trfase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004045">
        <property type="entry name" value="Glutathione_S-Trfase_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004046">
        <property type="entry name" value="GST_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036249">
        <property type="entry name" value="Thioredoxin-like_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00043">
        <property type="entry name" value="GST_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13409">
        <property type="entry name" value="GST_N_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SFLD" id="SFLDS00019">
        <property type="entry name" value="Glutathione_Transferase_(cytos"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47616">
        <property type="entry name" value="SSF47616"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52833">
        <property type="entry name" value="SSF52833"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50405">
        <property type="entry name" value="GST_CTER"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50404">
        <property type="entry name" value="GST_NTER"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="GST N-terminal" evidence="1">
        <location>
            <begin position="7"/>
            <end position="88"/>
        </location>
    </feature>
    <feature type="domain" description="GST C-terminal" evidence="2">
        <location>
            <begin position="91"/>
            <end position="213"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS50404"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS50405"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ABX38483.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="213" mass="23875" checksum="7C25D3794B0B4823" modified="2008-01-15" version="1">MLKLYGFSRVNAGARGRTRDLRVLWALEEMQLPFEIAGMDHPAHDLNTEAYRRLSPFEQIPALDDDGQVISESAAIVLHLARKCGRLMPSDATGEAQVLRWCFAAMNTVEPPLLSLMVLDWTADGSCGKHREFLVGWAHRMLGNLERWLDGRRFIATDEFTVADILMAHVLACIPDRTLTAPCPAVVAYRDRCLARPAWQRTLAAYNARVEAA</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-05-25" version="53" xmlns="http://uniprot.org/uniprot">
    <accession>A9C144</accession>
    <name>A9C144_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">SnoaL-like domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_5879</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
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                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
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            <strain evidence="3">DSM 14801 / SPH-1</strain>
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</entry>
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                <person name="Fischer K."/>
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                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
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                <person name="Pitluck S."/>
                <person name="Lowry S."/>
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                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
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        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
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            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
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    </evidence>
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    <sequence length="663" mass="74284" checksum="A5FCB9DC181041D4" modified="2008-01-15" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="73" xmlns="http://uniprot.org/uniprot">
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        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
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                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
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                <person name="Larimer F."/>
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                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
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        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
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            <strain evidence="8">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
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            <topology evidence="1">Multi-pass membrane protein</topology>
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        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
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    </evidence>
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        <source>
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    <sequence length="392" mass="39969" checksum="DE3E27D51BB8B20C" modified="2008-01-15" version="1">MPLSLLALAAGAFGIGTTEFIIMGLLTQVSQDLHISIPTAGSLISGYAIGVAVGAPVLTLLTRQWPRKRLLLALMLIFIAGNLAAAFAPSYEWLMSARVLTSLTHGTFFGVGAVVATGLVPVDKKASAIALMFSGLTLATLLGVPAGAWIGQMFGWRSAFLAVAAIGVLAFAILAAFVPRDQGRPEVTPLAQELAVLANGQVWLGLGITAFGFAGVFALYTYVEPLLTQVTRMGDSLVALTLLLFGAGLAAGNLLGGKLADRGVMRALVWSIAALMVVLAAGRWAFGNQAVAMAYVIVLGVVAFATVAPMQMRVLDQAGPQGANLVSSLNIAAFNLGNALGAWVGGLALAGGLGLVNLGWAAAALTAVGLVLVFWSSRLPAGSARSAGVACA</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="61" xmlns="http://uniprot.org/uniprot">
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            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
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        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
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            <strain evidence="3">DSM 14801 / SPH-1</strain>
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    </reference>
    <reference evidence="3" key="2">
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            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the enoyl-CoA hydratase/isomerase family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX38600.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012207769.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_5972"/>
    <dbReference type="PRIDE" id="A9C1D7"/>
    <dbReference type="EnsemblBacteria" id="ABX38600">
        <property type="protein sequence ID" value="ABX38600"/>
        <property type="gene ID" value="Daci_5972"/>
    </dbReference>
    <dbReference type="GeneID" id="60690332"/>
    <dbReference type="KEGG" id="dac:Daci_5972"/>
    <dbReference type="eggNOG" id="COG1024">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_009834_7_3_4"/>
    <dbReference type="OMA" id="LNWMRAM"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016853">
        <property type="term" value="F:isomerase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.12.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029045">
        <property type="entry name" value="ClpP/crotonase-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001753">
        <property type="entry name" value="Enoyl-CoA_hydra/iso"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014748">
        <property type="entry name" value="Enoyl-CoA_hydra_C"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00378">
        <property type="entry name" value="ECH_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52096">
        <property type="entry name" value="SSF52096"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2" id="KW-0413">Isomerase</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00005254"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX38600.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="261" mass="27969" checksum="C7B3B0AD79605796" modified="2008-01-15" version="1">MKTTALTLEFQGPLATITLTQPEVRNAFSDEVIADITQAFHSVGKRSDVRAVVLAAEGPAFCAGANLNWMRRMADYSRDENREDAGLLAEMLRVIYECPQPTIARVQGDVYAGGMGLVAACDMAVAAEGAGFCLSEVKIGLIPATISPYVIRAMGARAAHRYFLTGERFDAAEALRIGFVHRVVAADELDNAVDGLLKHLVSAGPAAARACKRLVIDVAEREINEQLIAATVEGIADIRASAEGKEGVQAFLQKRKPAWLA</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="46" xmlns="http://uniprot.org/uniprot">
    <accession>A9C1I3</accession>
    <name>A9C1I3_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">DUF2061 domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Daci_6018</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="4" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX38646.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_6018"/>
    <dbReference type="PRIDE" id="A9C1I3"/>
    <dbReference type="EnsemblBacteria" id="ABX38646">
        <property type="protein sequence ID" value="ABX38646"/>
        <property type="gene ID" value="Daci_6018"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_6018"/>
    <dbReference type="eggNOG" id="COG3205">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_160691_1_0_4"/>
    <dbReference type="OMA" id="FHEKVWK"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018638">
        <property type="entry name" value="DUF2061_membrane"/>
    </dbReference>
    <dbReference type="Pfam" id="PF09834">
        <property type="entry name" value="DUF2061"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="32"/>
            <end position="49"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="55"/>
            <end position="74"/>
        </location>
    </feature>
    <feature type="domain" description="DUF2061" evidence="2">
        <location>
            <begin position="29"/>
            <end position="79"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF09834"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ABX38646.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="98" mass="11101" checksum="13DC708BA56ADD12" modified="2008-01-15" version="1">MESHHEKSPEESPMTRIRQTLHHHRHTLMKTASYYVIHVTVAAAVAYAVTRNLWAALTLSLLEPTVQAVAFFFHEKLWERGLRRRADAAVMAPPTAAA</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="63" xmlns="http://uniprot.org/uniprot">
    <accession>A9C1K0</accession>
    <name>A9C1K0_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">LPS-assembly protein LptD</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="1" type="primary">lptD</name>
        <name evidence="4" type="ordered locus">Daci_6035</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="5" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="1">Together with LptE, is involved in the assembly of lipopolysaccharide (LPS) at the surface of the outer membrane.</text>
    </comment>
    <comment type="subunit">
        <text evidence="1">Component of the lipopolysaccharide transport and assembly complex. Interacts with LptE and LptA.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Cell outer membrane</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="1">Belongs to the LptD family.</text>
    </comment>
    <comment type="caution">
        <text evidence="1">Lacks conserved residue(s) required for the propagation of feature annotation.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX38663.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012207832.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_6035"/>
    <dbReference type="PRIDE" id="A9C1K0"/>
    <dbReference type="EnsemblBacteria" id="ABX38663">
        <property type="protein sequence ID" value="ABX38663"/>
        <property type="gene ID" value="Daci_6035"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_6035"/>
    <dbReference type="eggNOG" id="COG1452">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_009039_0_0_4"/>
    <dbReference type="OMA" id="DYSHLDW"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009279">
        <property type="term" value="C:cell outer membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043165">
        <property type="term" value="P:Gram-negative-bacterium-type cell outer membrane assembly"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015920">
        <property type="term" value="P:lipopolysaccharide transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0010033">
        <property type="term" value="P:response to organic substance"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01411">
        <property type="entry name" value="LPS_assembly_LptD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020889">
        <property type="entry name" value="LipoPS_assembly_LptD"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045659">
        <property type="entry name" value="LptD_2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007543">
        <property type="entry name" value="LptD_C"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04453">
        <property type="entry name" value="LptD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF19838">
        <property type="entry name" value="LptD_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="1" id="KW-0998">Cell outer membrane</keyword>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <feature type="domain" description="LptD_2" evidence="3">
        <location>
            <begin position="184"/>
            <end position="278"/>
        </location>
    </feature>
    <feature type="domain" description="LptD" evidence="2">
        <location>
            <begin position="284"/>
            <end position="661"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01411"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF04453"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF19838"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="ABX38663.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="774" mass="87357" checksum="E671D169FD6442FB" modified="2008-01-15" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="61" xmlns="http://uniprot.org/uniprot">
    <accession>A9C1K3</accession>
    <name>A9C1K3_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Alpha/beta hydrolase fold</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Daci_6038</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="4" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX38666.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012207835.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_6038"/>
    <dbReference type="PRIDE" id="A9C1K3"/>
    <dbReference type="EnsemblBacteria" id="ABX38666">
        <property type="protein sequence ID" value="ABX38666"/>
        <property type="gene ID" value="Daci_6038"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_6038"/>
    <dbReference type="eggNOG" id="COG2267">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_026209_7_2_4"/>
    <dbReference type="OMA" id="FHGFSDH"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016787">
        <property type="term" value="F:hydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.1820">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029058">
        <property type="entry name" value="AB_hydrolase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR022742">
        <property type="entry name" value="Hydrolase_4"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12146">
        <property type="entry name" value="Hydrolase_4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53474">
        <property type="entry name" value="SSF53474"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Hydrolase_4" evidence="2">
        <location>
            <begin position="40"/>
            <end position="274"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="24"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF12146"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ABX38666.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="294" mass="31161" checksum="07D55EC9BB138601" modified="2008-01-15" version="1">MAAPAPAPVPAPASQGQVTRLASSDGAELSLRDWPVDGGQARATVLLVHGLGEHIGRYEALARRLNAWGYAVRGYDQYGHGRSAGPRGGLTADGRLLDDLAAVVDATRAQQPAGQPLVLLGHSLGGLVAALFVARAIRPVDALVLSSPAFDVGLSPIQKLLVGTLPRLVPDLRVSNGLQIPYLSHDVAVCDAYRADPLCHDRISARLARFLAQGGPQVLARAGQWGVPSLLMWAGDDRLVAPAGSQAFADRAPPAVVQAQCFDGAYHELFNERDDFAAPVFARLRDWLGRFRPA</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="59" xmlns="http://uniprot.org/uniprot">
    <accession>A9C1L2</accession>
    <name>A9C1L2_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="3">RNP-1 like RNA-binding protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Daci_6047</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="4" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX38675.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012207844.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_6047"/>
    <dbReference type="PRIDE" id="A9C1L2"/>
    <dbReference type="EnsemblBacteria" id="ABX38675">
        <property type="protein sequence ID" value="ABX38675"/>
        <property type="gene ID" value="Daci_6047"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_6047"/>
    <dbReference type="eggNOG" id="COG0724">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_012062_28_1_4"/>
    <dbReference type="OMA" id="GWEDRSY"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003723">
        <property type="term" value="F:RNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.70.330">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012677">
        <property type="entry name" value="Nucleotide-bd_a/b_plait_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035979">
        <property type="entry name" value="RBD_domain_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000504">
        <property type="entry name" value="RRM_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00076">
        <property type="entry name" value="RRM_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00360">
        <property type="entry name" value="RRM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54928">
        <property type="entry name" value="SSF54928"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50102">
        <property type="entry name" value="RRM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="RRM" evidence="2">
        <location>
            <begin position="3"/>
            <end position="81"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="79"/>
            <end position="176"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS50102"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ABX38675.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="176" mass="17169" checksum="B6671B13B9B8BBB2" modified="2008-01-15" version="1">MGNKLYVGNLPYGVRDNDLEQAFSQFGAVTSARVMMERDTGRSKGFGFVEMGSDAEAQAAVQGMNGQPLGGRSLVVNEARPMEPRPPRSGGFGGGGGGGGYGRGDGGGGYGGGGRGDGGGYGRSDGGGGGGYGRGDGGGGGGYGGRGDGGFRSPYGSGPRNGGRGGGWGNNNNNGE</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="91" xmlns="http://uniprot.org/uniprot">
    <accession>A9C1V4</accession>
    <name>A9C1V4_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="2 7">Glutamate racemase</fullName>
            <ecNumber evidence="2 7">5.1.1.3</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="7" type="primary">murI</name>
        <name evidence="8" type="ordered locus">Daci_2651</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="9" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="7">Provides the (R)-glutamate required for cell wall biosynthesis.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1 7">
            <text>L-glutamate = D-glutamate</text>
            <dbReference type="Rhea" id="RHEA:12813"/>
            <dbReference type="ChEBI" id="CHEBI:29985"/>
            <dbReference type="ChEBI" id="CHEBI:29986"/>
            <dbReference type="EC" id="5.1.1.3"/>
        </reaction>
    </comment>
    <comment type="pathway">
        <text evidence="7">Cell wall biogenesis; peptidoglycan biosynthesis.</text>
    </comment>
    <comment type="similarity">
        <text evidence="7">Belongs to the aspartate/glutamate racemases family.</text>
    </comment>
    <dbReference type="EC" id="5.1.1.3" evidence="2 7"/>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX35289.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012204535.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_2651"/>
    <dbReference type="PRIDE" id="A9C1V4"/>
    <dbReference type="EnsemblBacteria" id="ABX35289">
        <property type="protein sequence ID" value="ABX35289"/>
        <property type="gene ID" value="Daci_2651"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_2651"/>
    <dbReference type="eggNOG" id="COG0796">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_052344_2_1_4"/>
    <dbReference type="OMA" id="LDFFKPH"/>
    <dbReference type="UniPathway" id="UPA00219"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008881">
        <property type="term" value="F:glutamate racemase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0071555">
        <property type="term" value="P:cell wall organization"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009252">
        <property type="term" value="P:peptidoglycan biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008360">
        <property type="term" value="P:regulation of cell shape"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00258">
        <property type="entry name" value="Glu_racemase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015942">
        <property type="entry name" value="Asp/Glu/hydantoin_racemase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001920">
        <property type="entry name" value="Asp/Glu_race"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018187">
        <property type="entry name" value="Asp/Glu_racemase_AS_1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004391">
        <property type="entry name" value="Glu_race"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR21198:SF2">
        <property type="entry name" value="PTHR21198:SF2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01177">
        <property type="entry name" value="Asp_Glu_race"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53681">
        <property type="entry name" value="SSF53681"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00067">
        <property type="entry name" value="glut_race"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00923">
        <property type="entry name" value="ASP_GLU_RACEMASE_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3 7" id="KW-0133">Cell shape</keyword>
    <keyword evidence="6 7" id="KW-0961">Cell wall biogenesis/degradation</keyword>
    <keyword evidence="5 7 8" id="KW-0413">Isomerase</keyword>
    <keyword evidence="4 7" id="KW-0573">Peptidoglycan synthesis</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Substrate binding" evidence="7">
        <location>
            <begin position="12"/>
            <end position="13"/>
        </location>
    </feature>
    <feature type="region of interest" description="Substrate binding" evidence="7">
        <location>
            <begin position="44"/>
            <end position="45"/>
        </location>
    </feature>
    <feature type="region of interest" description="Substrate binding" evidence="7">
        <location>
            <begin position="78"/>
            <end position="79"/>
        </location>
    </feature>
    <feature type="region of interest" description="Substrate binding" evidence="7">
        <location>
            <begin position="201"/>
            <end position="202"/>
        </location>
    </feature>
    <feature type="active site" description="Proton donor/acceptor" evidence="7">
        <location>
            <position position="77"/>
        </location>
    </feature>
    <feature type="active site" description="Proton donor/acceptor" evidence="7">
        <location>
            <position position="200"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001602"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00013090"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022960"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022984"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023235"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023316"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00258"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="ABX35289.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="296" mass="31431" checksum="A3CAC08712B91DAA" modified="2008-01-15" version="1">MTSPASPIGVFDSGIGGLSVLQALRHELPHERFVYLADSGNAPYGDARGDAFVQQRTRTIARHLREQHQIKVLVIACNTATAAAVDMLRAEMPELPLIGVEPAIKPASLSSQTGHVGVMATRGTVSSARFARLVAEHGQRVQFHVQPCDGLAKAIEESTEQPVPADPMATEVAQLCARYVNALGSFGQKTGEMDSLVLGCTHYIFAREQLRTLLGPDIQFIDTGAPVARQTRRVLDRLGTLTSESGPLPAAEGQVQLMTTGSLQALQSAASRWLELPAQCCSSVQVGESSAVPAAA</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2020-02-26" version="25" xmlns="http://uniprot.org/uniprot">
    <accession>A9C216</accession>
    <name>A9C216_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Daci_3014</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="2" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX35652.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="ABX35652">
        <property type="protein sequence ID" value="ABX35652"/>
        <property type="gene ID" value="Daci_3014"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_3014"/>
    <dbReference type="HOGENOM" id="CLU_2665069_0_0_4"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ABX35652.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="75" mass="8390" checksum="9264111C1F5A427F" modified="2008-01-15" version="1">MIAGNFDIDPIQLSGIEPQFLLAIGVANAWGHLFAQYTMKDSPDGPELKGSFGLDQSFLPEWIRDLDELLEFRGH</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="29" xmlns="http://uniprot.org/uniprot">
    <accession>A9C295</accession>
    <name>A9C295_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Daci_3401</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="2" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX36039.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012205239.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_3401"/>
    <dbReference type="PRIDE" id="A9C295"/>
    <dbReference type="EnsemblBacteria" id="ABX36039">
        <property type="protein sequence ID" value="ABX36039"/>
        <property type="gene ID" value="Daci_3401"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_3401"/>
    <dbReference type="HOGENOM" id="CLU_1560445_0_0_4"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ABX36039.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="171" mass="18223" checksum="BAC52883AA9E74E6" modified="2008-01-15" version="1">MTHETKVPGMAVTALAGEIVEALLADEKDGGYDLTAGLFGPSFSALVRRWAAAEWFGITNAREISDEAIKAAALAAGAAKFYPDAQSKKPWGEESFLVTGGFLQRFAKAVCTDFPADAEANKKAARWQPVAPLDSCTDPYNCARCKAHPAHRQGLHHAGISGSSRKEDSES</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="48" xmlns="http://uniprot.org/uniprot">
    <accession>A9C2F2</accession>
    <name>A9C2F2_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Daci_3460</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="2" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX36096.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012205296.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_3460"/>
    <dbReference type="PRIDE" id="A9C2F2"/>
    <dbReference type="EnsemblBacteria" id="ABX36096">
        <property type="protein sequence ID" value="ABX36096"/>
        <property type="gene ID" value="Daci_3460"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_3460"/>
    <dbReference type="eggNOG" id="ENOG503309P">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_196498_0_0_4"/>
    <dbReference type="OMA" id="YLNRKPQ"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ABX36096.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="70" mass="7709" checksum="D4A07DFEFC57811B" modified="2008-01-15" version="1">MNRFGQQPPALETLAVPTVDTATAAHYLDRSPQTLRIWACKNSGPIAPRRVAGRLQWLVSDIRKVLGVQA</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="66" xmlns="http://uniprot.org/uniprot">
    <accession>A9C2I1</accession>
    <name>A9C2I1_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Monooxygenase FAD-binding</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_3698</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX36330.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_3698"/>
    <dbReference type="PRIDE" id="A9C2I1"/>
    <dbReference type="EnsemblBacteria" id="ABX36330">
        <property type="protein sequence ID" value="ABX36330"/>
        <property type="gene ID" value="Daci_3698"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_3698"/>
    <dbReference type="eggNOG" id="COG0654">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_009665_19_5_4"/>
    <dbReference type="OMA" id="WSRCREC"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0071949">
        <property type="term" value="F:FAD binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004497">
        <property type="term" value="F:monooxygenase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.50.50.60">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002938">
        <property type="entry name" value="FAD-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036188">
        <property type="entry name" value="FAD/NAD-bd_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01494">
        <property type="entry name" value="FAD_binding_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51905">
        <property type="entry name" value="SSF51905"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0503">Monooxygenase</keyword>
    <keyword evidence="2" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="FAD_binding_3" evidence="1">
        <location>
            <begin position="6"/>
            <end position="361"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF01494"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX36330.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="417" mass="45872" checksum="337EE6C088F9C07F" modified="2008-01-15" version="1">MESQRMKVAIVGGGIGGLCLALALHQRGIACEVFEAVPEVREIGAGITLLPHAMRELSDLGLQPQLEALAIENLESVFFNRYGQFVYREPRGRHAGYELPELGIHRGRLHRVLFEAAVQRLGPGAVHTGHRCVRVDQSAHGATVHFAPDAQGHVPPSATAHIVVACDGVNSAVRRQFYPQEELAFGGINTWRGVSRFKPILTGKSYLRIGSVDTGKMVIYPIEDDIDGQGMQRINWVAEIRDPQMRMNDWNRAGRMEDVLEIFGGWTFDWLDVPALIRSAETIFEYPMVDKDPVDQWSFGRVTLLGDAAHPMYPRGSNGSAQAMRDARVLADLLAADPQGDPLALLAAYEASRLPATSQVVLTNRSTPPDFIIMKADELSGGQPFGHIDELISQDELRAIARHYEQVAGFANPQSQG</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="101" xmlns="http://uniprot.org/uniprot">
    <accession>A9C2J0</accession>
    <name>A9C2J0_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="7">Serine hydroxymethyltransferase</fullName>
            <shortName evidence="7">SHMT</shortName>
            <shortName evidence="7">Serine methylase</shortName>
            <ecNumber evidence="7">2.1.2.1</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="7" type="primary">glyA</name>
        <name evidence="10" type="ordered locus">Daci_3707</name>
    </gene>
    <organism evidence="10 11">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="10 11" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="11">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="11" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="11">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="7">Catalyzes the reversible interconversion of serine and glycine with tetrahydrofolate (THF) serving as the one-carbon carrier. This reaction serves as the major source of one-carbon groups required for the biosynthesis of purines, thymidylate, methionine, and other important biomolecules. Also exhibits THF-independent aldolase activity toward beta-hydroxyamino acids, producing glycine and aldehydes, via a retro-aldol mechanism.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="7">
            <text>(6R)-5,10-methylene-5,6,7,8-tetrahydrofolate + glycine + H2O = (6S)-5,6,7,8-tetrahydrofolate + L-serine</text>
            <dbReference type="Rhea" id="RHEA:15481"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:15636"/>
            <dbReference type="ChEBI" id="CHEBI:33384"/>
            <dbReference type="ChEBI" id="CHEBI:57305"/>
            <dbReference type="ChEBI" id="CHEBI:57453"/>
            <dbReference type="EC" id="2.1.2.1"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="1 7 8">
            <name>pyridoxal 5'-phosphate</name>
            <dbReference type="ChEBI" id="CHEBI:597326"/>
        </cofactor>
    </comment>
    <comment type="pathway">
        <text evidence="2 7">Amino-acid biosynthesis; glycine biosynthesis; glycine from L-serine: step 1/1.</text>
    </comment>
    <comment type="pathway">
        <text evidence="7">One-carbon metabolism; tetrahydrofolate interconversion.</text>
    </comment>
    <comment type="subunit">
        <text evidence="7">Homodimer.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="7">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="3 7">Belongs to the SHMT family.</text>
    </comment>
    <comment type="caution">
        <text evidence="7">Lacks conserved residue(s) required for the propagation of feature annotation.</text>
    </comment>
    <dbReference type="EC" id="2.1.2.1" evidence="7"/>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX36339.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012205535.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_3707"/>
    <dbReference type="PRIDE" id="A9C2J0"/>
    <dbReference type="EnsemblBacteria" id="ABX36339">
        <property type="protein sequence ID" value="ABX36339"/>
        <property type="gene ID" value="Daci_3707"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_3707"/>
    <dbReference type="eggNOG" id="COG0112">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_022477_2_0_4"/>
    <dbReference type="OMA" id="GRRYYEG"/>
    <dbReference type="UniPathway" id="UPA00193"/>
    <dbReference type="UniPathway" id="UPA00288">
        <property type="reaction ID" value="UER01023"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004372">
        <property type="term" value="F:glycine hydroxymethyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008168">
        <property type="term" value="F:methyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030170">
        <property type="term" value="F:pyridoxal phosphate binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0019264">
        <property type="term" value="P:glycine biosynthetic process from serine"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0032259">
        <property type="term" value="P:methylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0035999">
        <property type="term" value="P:tetrahydrofolate interconversion"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniPathway"/>
    </dbReference>
    <dbReference type="CDD" id="cd00378">
        <property type="entry name" value="SHMT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.640.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.1150.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00051">
        <property type="entry name" value="SHMT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015424">
        <property type="entry name" value="PyrdxlP-dep_Trfase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015421">
        <property type="entry name" value="PyrdxlP-dep_Trfase_major"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015422">
        <property type="entry name" value="PyrdxlP-dep_Trfase_small"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001085">
        <property type="entry name" value="Ser_HO-MeTrfase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019798">
        <property type="entry name" value="Ser_HO-MeTrfase_PLP_BS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR039429">
        <property type="entry name" value="SHMT-like_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11680">
        <property type="entry name" value="PTHR11680"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00464">
        <property type="entry name" value="SHMT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF000412">
        <property type="entry name" value="SHMT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53383">
        <property type="entry name" value="SSF53383"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00096">
        <property type="entry name" value="SHMT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="7" id="KW-0028">Amino-acid biosynthesis</keyword>
    <keyword evidence="7" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="10" id="KW-0489">Methyltransferase</keyword>
    <keyword evidence="4 7" id="KW-0554">One-carbon metabolism</keyword>
    <keyword evidence="6 7 8" id="KW-0663">Pyridoxal phosphate</keyword>
    <keyword evidence="11" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="5 7 10" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="SHMT" evidence="9">
        <location>
            <begin position="8"/>
            <end position="386"/>
        </location>
    </feature>
    <feature type="region of interest" description="Substrate binding" evidence="7">
        <location>
            <begin position="125"/>
            <end position="127"/>
        </location>
    </feature>
    <feature type="region of interest" description="Substrate binding" evidence="7">
        <location>
            <begin position="356"/>
            <end position="358"/>
        </location>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <position position="35"/>
        </location>
        <ligand>
            <name>pyridoxal 5'-phosphate</name>
            <dbReference type="ChEBI" id="CHEBI:597326"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <position position="55"/>
        </location>
        <ligand>
            <name>pyridoxal 5'-phosphate</name>
            <dbReference type="ChEBI" id="CHEBI:597326"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <position position="57"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <position position="64"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <position position="65"/>
        </location>
        <ligand>
            <name>pyridoxal 5'-phosphate</name>
            <dbReference type="ChEBI" id="CHEBI:597326"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <position position="121"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <position position="176"/>
        </location>
        <ligand>
            <name>pyridoxal 5'-phosphate</name>
            <dbReference type="ChEBI" id="CHEBI:597326"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <position position="204"/>
        </location>
        <ligand>
            <name>pyridoxal 5'-phosphate</name>
            <dbReference type="ChEBI" id="CHEBI:597326"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <position position="229"/>
        </location>
        <ligand>
            <name>pyridoxal 5'-phosphate</name>
            <dbReference type="ChEBI" id="CHEBI:597326"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <position position="236"/>
        </location>
        <ligand>
            <name>pyridoxal 5'-phosphate</name>
            <dbReference type="ChEBI" id="CHEBI:597326"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <position position="364"/>
        </location>
        <ligand>
            <name>pyridoxal 5'-phosphate</name>
            <dbReference type="ChEBI" id="CHEBI:597326"/>
        </ligand>
    </feature>
    <feature type="modified residue" description="N6-(pyridoxal phosphate)lysine" evidence="7 8">
        <location>
            <position position="230"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001933"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00004697"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00006376"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022563"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022898"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00051"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="PIRSR" id="PIRSR000412-50"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="9">
        <source>
            <dbReference type="Pfam" id="PF00464"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="EMBL" id="ABX36339.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="424" mass="46035" checksum="D938C15776B86B6E" modified="2008-01-15" version="1">MYDASLTLADFDLQLAKAIQSEKRRQEDHVELIASENYASPLVMAVQNSVFTNKYAEGYPGKRYYSGCENVDVAERLAVERAMALFDCDYANVQPHAGAQANAAVFLALAQPGDTVMGMNLAQGGHLTHGNPSNFSGRHYRIVPYGLDPATGLIDYDEMERIALEHRPRMLIGGFSAYSRHKDWARMRAIADKVGAVFWVDMAHVAGLVAAGEYPSPLPHAHVVTSTTHKTLRGPRGGLILSKGQDETFNRRLSSAVFPGVQGGPLMHVIAAKAVAFKEALQPGFKAYQRRVLANARAMSAVIQQRGYRIVSGGTDNHLMLIDLSDRSYTGKDADAALSEAHITTNKNTVPNDPRSPFVTSGLRIGTPAVTTRGFGQAQCEQLAGWLCDVLDALDAQEGARFAKVAAQVREQVTGLCARYPVYG</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="68" xmlns="http://uniprot.org/uniprot">
    <accession>A9C2N3</accession>
    <name>A9C2N3_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="7">Methyl-accepting chemotaxis sensory transducer</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ordered locus">Daci_3750</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="8" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the methyl-accepting chemotaxis (MCP) protein family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX36382.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012205576.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_3750"/>
    <dbReference type="PRIDE" id="A9C2N3"/>
    <dbReference type="EnsemblBacteria" id="ABX36382">
        <property type="protein sequence ID" value="ABX36382"/>
        <property type="gene ID" value="Daci_3750"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_3750"/>
    <dbReference type="eggNOG" id="COG0840">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_000445_107_16_4"/>
    <dbReference type="OMA" id="RMSATMK"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004888">
        <property type="term" value="F:transmembrane signaling receptor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006935">
        <property type="term" value="P:chemotaxis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0007165">
        <property type="term" value="P:signal transduction"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004090">
        <property type="entry name" value="Chemotax_Me-accpt_rcpt"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003660">
        <property type="entry name" value="HAMP_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR024478">
        <property type="entry name" value="HlyB_4HB_MCP"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004089">
        <property type="entry name" value="MCPsignal_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12729">
        <property type="entry name" value="4HB_MCP_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00672">
        <property type="entry name" value="HAMP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00015">
        <property type="entry name" value="MCPsignal"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00260">
        <property type="entry name" value="CHEMTRNSDUCR"/>
    </dbReference>
    <dbReference type="SMART" id="SM00304">
        <property type="entry name" value="HAMP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00283">
        <property type="entry name" value="MA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50111">
        <property type="entry name" value="CHEMOTAXIS_TRANSDUC_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50885">
        <property type="entry name" value="HAMP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-0472">Membrane</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0807">Transducer</keyword>
    <keyword evidence="4" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="4" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="4">
        <location>
            <begin position="192"/>
            <end position="212"/>
        </location>
    </feature>
    <feature type="domain" description="HAMP" evidence="6">
        <location>
            <begin position="214"/>
            <end position="266"/>
        </location>
    </feature>
    <feature type="domain" description="Methyl-accepting transducer" evidence="5">
        <location>
            <begin position="271"/>
            <end position="500"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="3">
        <location>
            <begin position="283"/>
            <end position="304"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00029447"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00284"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="PROSITE" id="PS50111"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="PROSITE" id="PS50885"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="ABX36382.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="533" mass="55183" checksum="7E9C2E4E6B626BC9" modified="2008-01-15" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="44" xmlns="http://uniprot.org/uniprot">
    <accession>A9C2P1</accession>
    <name>A9C2P1_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">SpoVT/AbrB-like protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_3758</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX36390.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_3758"/>
    <dbReference type="PRIDE" id="A9C2P1"/>
    <dbReference type="EnsemblBacteria" id="ABX36390">
        <property type="protein sequence ID" value="ABX36390"/>
        <property type="gene ID" value="Daci_3758"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_3758"/>
    <dbReference type="eggNOG" id="COG4456">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_162018_1_1_4"/>
    <dbReference type="OMA" id="PFAGWRE"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="67"/>
            <end position="88"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX36390.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="88" mass="10097" checksum="098C5DA4DA74B6F5" modified="2008-01-15" version="1">MPPVTAQLFATDGVQAVKLPAEFRFEDRAEVYIRRDENTGDVILSTIPRADWSEFMRLRHQLGHAAESALPVRQQGSEQRDPFQGWEE</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="63" xmlns="http://uniprot.org/uniprot">
    <accession>A9C2Z6</accession>
    <name>A9C2Z6_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">TraG-D_C domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Daci_4169</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="4" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX36800.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012205978.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_4169"/>
    <dbReference type="PRIDE" id="A9C2Z6"/>
    <dbReference type="EnsemblBacteria" id="ABX36800">
        <property type="protein sequence ID" value="ABX36800"/>
        <property type="gene ID" value="Daci_4169"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_4169"/>
    <dbReference type="eggNOG" id="COG3505">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_024857_0_0_4"/>
    <dbReference type="OMA" id="HIYKHGV"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR022503">
        <property type="entry name" value="Conj_coupling_TraG/TraD_PFGI-1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR022458">
        <property type="entry name" value="Conjugative_coupling_TraG/TraD"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR032689">
        <property type="entry name" value="TraG-D_C"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12696">
        <property type="entry name" value="TraG-D_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR03754">
        <property type="entry name" value="conj_TOL_TraD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR03743">
        <property type="entry name" value="SXT_TraD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="9"/>
            <end position="32"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="38"/>
            <end position="57"/>
        </location>
    </feature>
    <feature type="domain" description="TraG-D_C" evidence="2">
        <location>
            <begin position="508"/>
            <end position="636"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF12696"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ABX36800.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="727" mass="80734" checksum="D667331D41F586EF" modified="2008-01-15" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="56" xmlns="http://uniprot.org/uniprot">
    <accession>A9C389</accession>
    <name>A9C389_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Secretion protein HlyD family protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ordered locus">Daci_4571</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="5" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX37200.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012206370.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_4571"/>
    <dbReference type="PRIDE" id="A9C389"/>
    <dbReference type="EnsemblBacteria" id="ABX37200">
        <property type="protein sequence ID" value="ABX37200"/>
        <property type="gene ID" value="Daci_4571"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_4571"/>
    <dbReference type="eggNOG" id="COG1566">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_018816_6_1_4"/>
    <dbReference type="OMA" id="DAWAVFQ"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR032317">
        <property type="entry name" value="HlyD_D23"/>
    </dbReference>
    <dbReference type="Pfam" id="PF16576">
        <property type="entry name" value="HlyD_D23"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0472">Membrane</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="2" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="29"/>
            <end position="47"/>
        </location>
    </feature>
    <feature type="domain" description="HlyD_D23" evidence="3">
        <location>
            <begin position="62"/>
            <end position="301"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="22"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF16576"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="ABX37200.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="349" mass="37774" checksum="1F94777BD72B48FE" modified="2008-01-15" version="1">MSTATPDHPRSATEAPGPAPVPPGHRRPWLALAIVLAVLLLVAWGFWRAAQPAPLYFQGQMEARETDIAPKVTARIAKVRVTEGQKIQPGDLLVEMDSPEVRAKLAQAEAARDAAQAQADKAQAGARPQEVQMARLNWQRAQTAADLAQTSLRRVQSLFDQGLVAAQKRDEADANWRASRDQALAARAQYEMAASGARQEDRSAAQAQARQVQGVVAEVEAARAETELRSPVGGEVVQVLARQGELSPQGVAVVTVVDLADQWVVLNVREDQLARFAQGSRFTGRLPGLDNREAGFEVYYLGVLPDFATWRATRAGQGFDARTFEVRARPQQPIAGARPGMSVVVEGGR</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="80" xmlns="http://uniprot.org/uniprot">
    <accession>A9C391</accession>
    <name>A9C391_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="8">Amino-acid acetyltransferase</fullName>
            <ecNumber evidence="8">2.3.1.1</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="8">N-acetylglutamate synthase</fullName>
            <shortName evidence="8">AGS</shortName>
            <shortName evidence="8">NAGS</shortName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="8" type="primary">argA</name>
        <name evidence="10" type="ordered locus">Daci_4573</name>
    </gene>
    <organism evidence="10 11">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="10 11" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="11">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="11" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="11">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="1 8">
            <text>acetyl-CoA + L-glutamate = CoA + H(+) + N-acetyl-L-glutamate</text>
            <dbReference type="Rhea" id="RHEA:24292"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:29985"/>
            <dbReference type="ChEBI" id="CHEBI:44337"/>
            <dbReference type="ChEBI" id="CHEBI:57287"/>
            <dbReference type="ChEBI" id="CHEBI:57288"/>
            <dbReference type="EC" id="2.3.1.1"/>
        </reaction>
    </comment>
    <comment type="pathway">
        <text evidence="2 8">Amino-acid biosynthesis; L-arginine biosynthesis; N(2)-acetyl-L-ornithine from L-glutamate: step 1/4.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="8">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="miscellaneous">
        <text evidence="8">In bacteria which possess the bifunctional enzyme ornithine acetyltransferase/N-acetylglutamate synthase (ArgJ), ArgA fulfills an anaplerotic role.</text>
    </comment>
    <comment type="similarity">
        <text evidence="3 8">Belongs to the acetyltransferase family. ArgA subfamily.</text>
    </comment>
    <dbReference type="EC" id="2.3.1.1" evidence="8"/>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX37202.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012206372.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_4573"/>
    <dbReference type="PRIDE" id="A9C391"/>
    <dbReference type="EnsemblBacteria" id="ABX37202">
        <property type="protein sequence ID" value="ABX37202"/>
        <property type="gene ID" value="Daci_4573"/>
    </dbReference>
    <dbReference type="GeneID" id="60688895"/>
    <dbReference type="KEGG" id="dac:Daci_4573"/>
    <dbReference type="eggNOG" id="COG0548">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="eggNOG" id="COG1246">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_024773_0_0_4"/>
    <dbReference type="OMA" id="KRKYNWD"/>
    <dbReference type="UniPathway" id="UPA00068">
        <property type="reaction ID" value="UER00106"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004042">
        <property type="term" value="F:acetyl-CoA:L-glutamate N-acetyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0103045">
        <property type="term" value="F:methione N-acyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006526">
        <property type="term" value="P:arginine biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd04237">
        <property type="entry name" value="AAK_NAGS-ABP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.1160.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01105">
        <property type="entry name" value="N_acetyl_glu_synth"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036393">
        <property type="entry name" value="AceGlu_kinase-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016181">
        <property type="entry name" value="Acyl_CoA_acyltransferase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001048">
        <property type="entry name" value="Asp/Glu/Uridylate_kinase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000182">
        <property type="entry name" value="GNAT_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR033719">
        <property type="entry name" value="NAGS_kin"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010167">
        <property type="entry name" value="NH2A_AcTrfase"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30602">
        <property type="entry name" value="PTHR30602"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00696">
        <property type="entry name" value="AA_kinase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00583">
        <property type="entry name" value="Acetyltransf_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF000423">
        <property type="entry name" value="ArgA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53633">
        <property type="entry name" value="SSF53633"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55729">
        <property type="entry name" value="SSF55729"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01890">
        <property type="entry name" value="N-Ac-Glu-synth"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51186">
        <property type="entry name" value="GNAT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="7 8" id="KW-0012">Acyltransferase</keyword>
    <keyword evidence="5 8" id="KW-0028">Amino-acid biosynthesis</keyword>
    <keyword evidence="4 8" id="KW-0055">Arginine biosynthesis</keyword>
    <keyword evidence="8" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="11" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="6 8 10" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="N-acetyltransferase" evidence="9">
        <location>
            <begin position="302"/>
            <end position="438"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00000016"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00004925"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00009145"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022571"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022605"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023315"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01105"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="9">
        <source>
            <dbReference type="PROSITE" id="PS51186"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="EMBL" id="ABX37202.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="448" mass="49499" checksum="4377AA0C1FDCF615" modified="2008-01-15" version="1">MSTVFNFTFVPWFRSVAPYIHKFRHQTFVVGLTGEAIASGKLSSIVQDLAMIQAMGVKIVLVHGFRPQVNEQLAAKGHEAQYSRGVRITDSVALDCAQEAAGQLRYEIEAAFSQGLPNTPMAGARVRVISGNFLTARPVGIVDGVDFKHSGLVRKVDVSGIRSALDMDAMVLMSPFGFSPTGEAFNLSMEEVATRVAIELKADKLIFMTEVPGIRMDPTGPADETNPIDTELPLATARRMLAELPTPEQPTDTGFYLQHCVHACEHGVERSHILPFAIDGALLLEIYVHDGIGTMIIDEKLEELREATPDDVAGIIQLIEPFEKDGTLVKRSRTEIERDIAHYTIIEHDGVIFGCAALYPYPSARTAEMAAVTVSPKSQGTGDGEKLLKRIEQRAKAQGLDSLFVLTTRTMHWFIKRGFQPVDPDWLPEARKAKYNWDRKSQVLVKKL</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="54" xmlns="http://uniprot.org/uniprot">
    <accession>A9C3N0</accession>
    <name>A9C3N0_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Daci_4712</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="2" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX37341.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012206511.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_4712"/>
    <dbReference type="PRIDE" id="A9C3N0"/>
    <dbReference type="EnsemblBacteria" id="ABX37341">
        <property type="protein sequence ID" value="ABX37341"/>
        <property type="gene ID" value="Daci_4712"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_4712"/>
    <dbReference type="eggNOG" id="COG3063">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_146069_2_0_4"/>
    <dbReference type="OMA" id="GYSAAWK"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.25.40.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011990">
        <property type="entry name" value="TPR-like_helical_dom_sf"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48452">
        <property type="entry name" value="SSF48452"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ABX37341.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="108" mass="11690" checksum="94CD36F8476D64BE" modified="2008-01-15" version="1">MNEMTQRLEGLLASGKDSALLRCTLGKTYLENEAPEVAHSHLERATELDPGYSVAWKLLGRALLALGDAAGARRAWNTGLACAQQKGDAQVVKEIGVFLKRLDRQQAG</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="41" xmlns="http://uniprot.org/uniprot">
    <accession>A9BLF2</accession>
    <name>A9BLF2_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Daci_3806</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="2" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX36437.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_3806"/>
    <dbReference type="PRIDE" id="A9BLF2"/>
    <dbReference type="EnsemblBacteria" id="ABX36437">
        <property type="protein sequence ID" value="ABX36437"/>
        <property type="gene ID" value="Daci_3806"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_3806"/>
    <dbReference type="eggNOG" id="ENOG50330AH">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_101709_0_0_4"/>
    <dbReference type="OMA" id="VKYQADY"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR021851">
        <property type="entry name" value="DUF3455"/>
    </dbReference>
    <dbReference type="Pfam" id="PF11937">
        <property type="entry name" value="DUF3455"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ABX36437.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="217" mass="23033" checksum="2E1CB12EFC4A04B3" modified="2008-01-15" version="1">MRWRVVPAAAQKMRCFSPLHKTVWRIAMLTSRSASRTAAVSFAVATAALLAACGSMHKPASTFSQASLPAPIQVPAGNKVAWETVGSGDITYECRDKANAPGQTEWVFVGPDAVLKDRMGKQVGRYYGPPATWEANDGSKLTATQLAVAPSGAGNLPYQLVKANPAMGSGALEGVSYIQRVALQGGVAPADKPCMAANKGQKTTVKYQADYIFWKPM</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="71" xmlns="http://uniprot.org/uniprot">
    <accession>A9BLJ1</accession>
    <name>A9BLJ1_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Type IV / VI secretion system protein, DotU family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ordered locus">Daci_3845</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="6" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX36476.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012205670.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_3845"/>
    <dbReference type="PRIDE" id="A9BLJ1"/>
    <dbReference type="EnsemblBacteria" id="ABX36476">
        <property type="protein sequence ID" value="ABX36476"/>
        <property type="gene ID" value="Daci_3845"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_3845"/>
    <dbReference type="eggNOG" id="COG1360">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="eggNOG" id="COG3455">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_041790_0_0_4"/>
    <dbReference type="OMA" id="NWHLSLA"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd07185">
        <property type="entry name" value="OmpA_C-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.25.40.590">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.1330.60">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006665">
        <property type="entry name" value="OmpA-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036737">
        <property type="entry name" value="OmpA-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017733">
        <property type="entry name" value="OmpA/MotB_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017732">
        <property type="entry name" value="T4/T6SS_DotU"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038522">
        <property type="entry name" value="T4/T6SS_DotU_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF09850">
        <property type="entry name" value="DotU"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00691">
        <property type="entry name" value="OmpA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF103088">
        <property type="entry name" value="SSF103088"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR03349">
        <property type="entry name" value="IV_VI_DotU"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR03350">
        <property type="entry name" value="type_VI_ompA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51123">
        <property type="entry name" value="OMPA_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1 3" id="KW-0472">Membrane</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="3" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="3">
        <location>
            <begin position="227"/>
            <end position="250"/>
        </location>
    </feature>
    <feature type="domain" description="OmpA-like" evidence="4">
        <location>
            <begin position="305"/>
            <end position="425"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="1"/>
            <end position="42"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00473"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="PROSITE" id="PS51123"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="ABX36476.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="443" mass="48919" checksum="C47C0D28AACC9373" modified="2008-01-15" version="1">MNSSNISHQMPWGGDADTGRAEGAASAAPAPAGQEPLRSNLPDVVSGGNPLVAAANRLLNLIPQIRAMVTNEDPRALQQLLLEHIREFEQRAGASGVPMETIIGARYCICTVLDETAAQTPWGSAGVWPKHSLLVALHNETWGGEKFFQLLARLVQTPHQHIDLIELLYYCVMLGFEGRYRVIDNGRAQLETLKARLLQLIESTRGDRSSLLSVHWRGVQRLASPPWAMVPLWVAAAITLLLAFFIYLWFSYRLSNSSDDLFAAINEIRFPRTSAAATVATLKPRLRQFLEPEIREGLVSVRDEADRSTVILRGDGLFDPAATVVKPRYVQVIHRVAAALDEVPGKVVVNGYTDNLPIRTARFPSNWNLSQERAQAVSQMLGGSLRDRQRLHAEGRADSDPVAPNNTAEGRALNRRVEIVLLVAPQQRDQQLQALPAAPETRN</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="31" xmlns="http://uniprot.org/uniprot">
    <accession>A9BLM5</accession>
    <name>A9BLM5_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Daci_3879</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="2" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX36510.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012205704.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_3879"/>
    <dbReference type="PRIDE" id="A9BLM5"/>
    <dbReference type="EnsemblBacteria" id="ABX36510">
        <property type="protein sequence ID" value="ABX36510"/>
        <property type="gene ID" value="Daci_3879"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_3879"/>
    <dbReference type="HOGENOM" id="CLU_1413119_0_0_4"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ABX36510.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="192" mass="22014" checksum="C36651EAB0330EF3" modified="2008-01-15" version="1">MTIDYQKIRIILNKYLFGEICLNVETSATVPESIEDLASKGFSREGDPNDHELFEKYYSIVNKNQGINFKIYTFKGKIWSSGLDFHGFRLSTILKMINKPANMRLFLDKKNSDGALIINDLCVCRFSYPKENPLALTFETNAAIIDDMKNRKISTKAVENDFTEISAVLARRSNRKLRKIKQILVAKGHILK</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="98" xmlns="http://uniprot.org/uniprot">
    <accession>A9BM03</accession>
    <name>A9BM03_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="8">DNA gyrase subunit A</fullName>
            <ecNumber evidence="8">5.6.2.2</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="8" type="primary">gyrA</name>
        <name evidence="11" type="ordered locus">Daci_4719</name>
    </gene>
    <organism evidence="11 12">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="11 12" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="12">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="12" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="12">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="8">A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1 8">
            <text>ATP-dependent breakage, passage and rejoining of double-stranded DNA.</text>
            <dbReference type="EC" id="5.6.2.2"/>
        </reaction>
    </comment>
    <comment type="subunit">
        <text evidence="8">Heterotetramer, composed of two GyrA and two GyrB chains. In the heterotetramer, GyrA contains the active site tyrosine that forms a transient covalent intermediate with DNA, while GyrB binds cofactors and catalyzes ATP hydrolysis.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="8">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="miscellaneous">
        <text evidence="8">Few gyrases are as efficient as E.coli at forming negative supercoils. Not all organisms have 2 type II topoisomerases; in organisms with a single type II topoisomerase this enzyme also has to decatenate newly replicated chromosomes.</text>
    </comment>
    <comment type="similarity">
        <text evidence="8">Belongs to the topoisomerase GyrA/ParC subunit family.</text>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the type II topoisomerase GyrA/ParC subunit family.</text>
    </comment>
    <dbReference type="EC" id="5.6.2.2" evidence="8"/>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX37348.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012206518.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_4719"/>
    <dbReference type="PRIDE" id="A9BM03"/>
    <dbReference type="EnsemblBacteria" id="ABX37348">
        <property type="protein sequence ID" value="ABX37348"/>
        <property type="gene ID" value="Daci_4719"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_4719"/>
    <dbReference type="eggNOG" id="COG0188">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_002977_6_1_4"/>
    <dbReference type="OMA" id="THHWLLF"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005694">
        <property type="term" value="C:chromosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0034335">
        <property type="term" value="F:DNA negative supercoiling activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006265">
        <property type="term" value="P:DNA topological change"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006261">
        <property type="term" value="P:DNA-templated DNA replication"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd00187">
        <property type="entry name" value="TOP4c"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.268.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.120.10.90">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.199.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01897">
        <property type="entry name" value="GyrA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005743">
        <property type="entry name" value="GyrA"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006691">
        <property type="entry name" value="GyrA/parC_rep"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035516">
        <property type="entry name" value="Gyrase/topoIV_suA_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013760">
        <property type="entry name" value="Topo_IIA-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013758">
        <property type="entry name" value="Topo_IIA_A/C_ab"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013757">
        <property type="entry name" value="Topo_IIA_A_a_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002205">
        <property type="entry name" value="Topo_IIA_dom_A"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03989">
        <property type="entry name" value="DNA_gyraseA_C"/>
        <property type="match status" value="6"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00521">
        <property type="entry name" value="DNA_topoisoIV"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00434">
        <property type="entry name" value="TOP4c"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF101904">
        <property type="entry name" value="SSF101904"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56719">
        <property type="entry name" value="SSF56719"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4 8" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="8" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="6 8" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="7 8 11" id="KW-0413">Isomerase</keyword>
    <keyword evidence="3 8" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="12" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="5 8" id="KW-0799">Topoisomerase</keyword>
    <feature type="domain" description="TOP4c" evidence="10">
        <location>
            <begin position="11"/>
            <end position="507"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="9">
        <location>
            <begin position="857"/>
            <end position="888"/>
        </location>
    </feature>
    <feature type="short sequence motif" description="GyrA-box" evidence="8">
        <location>
            <begin position="572"/>
            <end position="578"/>
        </location>
    </feature>
    <feature type="active site" description="O-(5'-phospho-DNA)-tyrosine intermediate" evidence="8">
        <location>
            <position position="122"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00000185"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00008263"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023029"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023235"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01897"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="10">
        <source>
            <dbReference type="SMART" id="SM00434"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="EMBL" id="ABX37348.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="888" mass="98623" checksum="A17514F163660272" modified="2008-01-15" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="72" xmlns="http://uniprot.org/uniprot">
    <accession>A9BM81</accession>
    <name>A9BM81_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Transcriptional regulator, TetR family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ordered locus">Daci_4797</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="5" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX37426.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012206596.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="PRIDE" id="A9BM81"/>
    <dbReference type="EnsemblBacteria" id="ABX37426">
        <property type="protein sequence ID" value="ABX37426"/>
        <property type="gene ID" value="Daci_4797"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_4797"/>
    <dbReference type="eggNOG" id="COG1309">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_069356_18_2_4"/>
    <dbReference type="OMA" id="WSMFFGC"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009057">
        <property type="entry name" value="Homeobox-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001647">
        <property type="entry name" value="HTH_TetR"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00440">
        <property type="entry name" value="TetR_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00455">
        <property type="entry name" value="HTHTETR"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46689">
        <property type="entry name" value="SSF46689"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50977">
        <property type="entry name" value="HTH_TETR_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HTH tetR-type" evidence="3">
        <location>
            <begin position="19"/>
            <end position="79"/>
        </location>
    </feature>
    <feature type="DNA-binding region" description="H-T-H motif" evidence="1">
        <location>
            <begin position="42"/>
            <end position="61"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="1"/>
            <end position="20"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00335"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="PROSITE" id="PS50977"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="ABX37426.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="216" mass="23559" checksum="7ECBA33C570993A9" modified="2008-01-15" version="1">MTTSATQRRARTPQTERVETTQRKIIDSALALLREGGFKSATLQAIARGADVSLGALQHHFESRDALMERLVIEVMEPLSDQGTVWPDKALPLRERAQTFVTLAWDNIFGAANYQAAWSMFFGCKASPSLFDRVDARRVHVDSVFYTRFLDVFPEIAAHHPRPQGFAAMAFAILRGTGVLELFEVGEQERQGSLDALVEAIVQAGTPQAGGGGGGA</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="62" xmlns="http://uniprot.org/uniprot">
    <accession>A9BMH5</accession>
    <name>A9BMH5_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Taurine dioxygenase</fullName>
            <ecNumber evidence="3">1.14.11.17</ecNumber>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Daci_4891</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="4" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EC" id="1.14.11.17" evidence="3"/>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX37520.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012206690.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_4891"/>
    <dbReference type="PRIDE" id="A9BMH5"/>
    <dbReference type="EnsemblBacteria" id="ABX37520">
        <property type="protein sequence ID" value="ABX37520"/>
        <property type="gene ID" value="Daci_4891"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_4891"/>
    <dbReference type="eggNOG" id="COG2175">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_036005_2_1_4"/>
    <dbReference type="OMA" id="LRWKVVF"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000908">
        <property type="term" value="F:taurine dioxygenase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.60.130.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR042098">
        <property type="entry name" value="TauD-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003819">
        <property type="entry name" value="TauD/TfdA-like"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02668">
        <property type="entry name" value="TauD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-0223">Dioxygenase</keyword>
    <keyword evidence="1 3" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="TauD" evidence="2">
        <location>
            <begin position="2"/>
            <end position="268"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023002"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF02668"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ABX37520.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="273" mass="30486" checksum="0D7DC84130186FB4" modified="2008-01-15" version="1">MQVEHITPCIGSEIYGIDLSDPAQVHDHADALRRLLAERQVIFFRDQTLDPAQQVRVAQVFGKVEPVSSTFPSHPDDPHVELLISQGTRTGTDIWHADLTWQTKPPAGACLYAVDVPPTGGDTMWASMTTAFASLAPELQAYLRKLRATHNWEAPALRQSLMRRDPSGEAYRATRLKHPPLEQPVVLEHPVTGLPVAFVNSLYTTHIEGVTSDESAALIAMLSGLAKVPEWQVRFRWRKGSVAIWDNLATQHYAVNDYHPAARRMHRVAIRQA</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2021-09-29" version="84" xmlns="http://uniprot.org/uniprot">
    <accession>A9BMK1</accession>
    <name>A9BMK1_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="9">Phosphate transport system permease protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="11" type="ordered locus">Daci_4917</name>
    </gene>
    <organism evidence="11 12">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="11 12" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="12">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="12" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="12">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="9">Part of the binding-protein-dependent transport system for phosphate; probably responsible for the translocation of the substrate across the membrane.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="9">Cell inner membrane</location>
            <topology evidence="9">Multi-pass membrane protein</topology>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="8">Cell membrane</location>
            <topology evidence="8">Multi-pass membrane protein</topology>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2 9">Belongs to the binding-protein-dependent transport system permease family. CysTW subfamily.</text>
    </comment>
    <comment type="caution">
        <text evidence="9">Lacks conserved residue(s) required for the propagation of feature annotation.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX37546.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012206716.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_4917"/>
    <dbReference type="EnsemblBacteria" id="ABX37546">
        <property type="protein sequence ID" value="ABX37546"/>
        <property type="gene ID" value="Daci_4917"/>
    </dbReference>
    <dbReference type="GeneID" id="60689261"/>
    <dbReference type="KEGG" id="dac:Daci_4917"/>
    <dbReference type="eggNOG" id="COG0573">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_033621_1_3_4"/>
    <dbReference type="OMA" id="VIRMSVL"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005315">
        <property type="term" value="F:inorganic phosphate transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006817">
        <property type="term" value="P:phosphate ion transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd06261">
        <property type="entry name" value="TM_PBP2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.3720.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000515">
        <property type="entry name" value="MetI-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035906">
        <property type="entry name" value="MetI-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011864">
        <property type="entry name" value="Phosphate_PstC"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00528">
        <property type="entry name" value="BPD_transp_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF161098">
        <property type="entry name" value="SSF161098"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR02138">
        <property type="entry name" value="phosphate_pstC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50928">
        <property type="entry name" value="ABC_TM1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="9" id="KW-0997">Cell inner membrane</keyword>
    <keyword evidence="4" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="7 8" id="KW-0472">Membrane</keyword>
    <keyword evidence="9" id="KW-0592">Phosphate transport</keyword>
    <keyword evidence="12" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="5 8" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="6 8" id="KW-1133">Transmembrane helix</keyword>
    <keyword evidence="3 8" id="KW-0813">Transport</keyword>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="63"/>
            <end position="92"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="104"/>
            <end position="122"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="158"/>
            <end position="178"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="219"/>
            <end position="241"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="279"/>
            <end position="301"/>
        </location>
    </feature>
    <feature type="domain" description="ABC transmembrane type-1" evidence="10">
        <location>
            <begin position="67"/>
            <end position="297"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00007069"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022448"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="RuleBase" id="RU363032"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="RuleBase" id="RU363054"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="10">
        <source>
            <dbReference type="PROSITE" id="PS50928"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="EMBL" id="ABX37546.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="312" mass="33155" checksum="6528081EE2CE6733" modified="2008-01-15" version="1">MLSGRVADRLFGALARLAALLTLGLLLAILASLLVGAWPAIYEYGLSFLGRSVWDPVRNEYGGLVMIYGTLATSAIALLIAVPVSFGIALFLTELSPAWLKRPLGTAVELLAAVPSIVYGMWGLMVFGPVLSTYVQQPLQKLFQGVPYLEAFVSGPPVGIGILSAGIILAIMIIPFIASVMRDVFEVTPALLKESAYGLGSTTWEVVWKVVLPYTKTGVLGGVMLGLGRALGETMAVTFVIGNMNQLNSLSVFEAANSITSALANEFAEAGEGLHQASLIYLGLVLFFITFVVLACSKVLLNRLQKNEGARS</sequence>
</entry>
<entry dataset="Swiss-Prot" created="2009-03-24" modified="2022-08-03" version="78" xmlns="http://uniprot.org/uniprot">
    <accession>A9BMU3</accession>
    <name>PURA_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Adenylosuccinate synthetase</fullName>
            <shortName evidence="1">AMPSase</shortName>
            <shortName evidence="1">AdSS</shortName>
            <ecNumber evidence="1">6.3.4.4</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="1">IMP--aspartate ligase</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="1" type="primary">purA</name>
        <name type="ordered locus">Daci_5009</name>
    </gene>
    <organism>
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference key="1">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain>DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="1">Plays an important role in the de novo pathway of purine nucleotide biosynthesis. Catalyzes the first committed step in the biosynthesis of AMP from IMP.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>GTP + IMP + L-aspartate = GDP + 2 H(+) + N(6)-(1,2-dicarboxyethyl)-AMP + phosphate</text>
            <dbReference type="Rhea" id="RHEA:15753"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:29991"/>
            <dbReference type="ChEBI" id="CHEBI:37565"/>
            <dbReference type="ChEBI" id="CHEBI:43474"/>
            <dbReference type="ChEBI" id="CHEBI:57567"/>
            <dbReference type="ChEBI" id="CHEBI:58053"/>
            <dbReference type="ChEBI" id="CHEBI:58189"/>
            <dbReference type="EC" id="6.3.4.4"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </cofactor>
        <text evidence="1">Binds 1 Mg(2+) ion per subunit.</text>
    </comment>
    <comment type="pathway">
        <text evidence="1">Purine metabolism; AMP biosynthesis via de novo pathway; AMP from IMP: step 1/2.</text>
    </comment>
    <comment type="subunit">
        <text evidence="1">Homodimer.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="1">Belongs to the adenylosuccinate synthetase family.</text>
    </comment>
    <dbReference type="EC" id="6.3.4.4" evidence="1"/>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX37638.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012206808.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A9BMU3"/>
    <dbReference type="SMR" id="A9BMU3"/>
    <dbReference type="STRING" id="398578.Daci_5009"/>
    <dbReference type="PRIDE" id="A9BMU3"/>
    <dbReference type="EnsemblBacteria" id="ABX37638">
        <property type="protein sequence ID" value="ABX37638"/>
        <property type="gene ID" value="Daci_5009"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_5009"/>
    <dbReference type="eggNOG" id="COG0104">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_029848_0_0_4"/>
    <dbReference type="OMA" id="FHHAKPI"/>
    <dbReference type="UniPathway" id="UPA00075">
        <property type="reaction ID" value="UER00335"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004019">
        <property type="term" value="F:adenylosuccinate synthase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005525">
        <property type="term" value="F:GTP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000287">
        <property type="term" value="F:magnesium ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0044208">
        <property type="term" value="P:'de novo' AMP biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniPathway"/>
    </dbReference>
    <dbReference type="CDD" id="cd03108">
        <property type="entry name" value="AdSS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.300.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.440.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.170.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00011">
        <property type="entry name" value="Adenylosucc_synth"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018220">
        <property type="entry name" value="Adenylosuccin_syn_GTP-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR033128">
        <property type="entry name" value="Adenylosuccin_syn_Lys_AS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR042109">
        <property type="entry name" value="Adenylosuccinate_synth_dom1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR042110">
        <property type="entry name" value="Adenylosuccinate_synth_dom2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR042111">
        <property type="entry name" value="Adenylosuccinate_synth_dom3"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001114">
        <property type="entry name" value="Adenylosuccinate_synthetase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11846">
        <property type="entry name" value="PTHR11846"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00709">
        <property type="entry name" value="Adenylsucc_synt"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00788">
        <property type="entry name" value="Adenylsucc_synt"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00184">
        <property type="entry name" value="purA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01266">
        <property type="entry name" value="ADENYLOSUCCIN_SYN_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00513">
        <property type="entry name" value="ADENYLOSUCCIN_SYN_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword id="KW-0963">Cytoplasm</keyword>
    <keyword id="KW-0342">GTP-binding</keyword>
    <keyword id="KW-0436">Ligase</keyword>
    <keyword id="KW-0460">Magnesium</keyword>
    <keyword id="KW-0479">Metal-binding</keyword>
    <keyword id="KW-0547">Nucleotide-binding</keyword>
    <keyword id="KW-0658">Purine biosynthesis</keyword>
    <keyword id="KW-1185">Reference proteome</keyword>
    <feature type="chain" id="PRO_1000089286" description="Adenylosuccinate synthetase">
        <location>
            <begin position="1"/>
            <end position="458"/>
        </location>
    </feature>
    <feature type="active site" description="Proton acceptor" evidence="1">
        <location>
            <position position="18"/>
        </location>
    </feature>
    <feature type="active site" description="Proton donor" evidence="1">
        <location>
            <position position="46"/>
        </location>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <begin position="17"/>
            <end position="23"/>
        </location>
        <ligand>
            <name>GTP</name>
            <dbReference type="ChEBI" id="CHEBI:37565"/>
        </ligand>
    </feature>
    <feature type="binding site" description="in other chain" evidence="1">
        <location>
            <begin position="18"/>
            <end position="21"/>
        </location>
        <ligand>
            <name>IMP</name>
            <dbReference type="ChEBI" id="CHEBI:58053"/>
            <note>ligand shared between dimeric partners</note>
        </ligand>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <position position="18"/>
        </location>
        <ligand>
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </ligand>
    </feature>
    <feature type="binding site" description="in other chain" evidence="1">
        <location>
            <begin position="43"/>
            <end position="46"/>
        </location>
        <ligand>
            <name>IMP</name>
            <dbReference type="ChEBI" id="CHEBI:58053"/>
            <note>ligand shared between dimeric partners</note>
        </ligand>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <begin position="45"/>
            <end position="47"/>
        </location>
        <ligand>
            <name>GTP</name>
            <dbReference type="ChEBI" id="CHEBI:37565"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <position position="45"/>
        </location>
        <ligand>
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </ligand>
    </feature>
    <feature type="binding site" description="in other chain" evidence="1">
        <location>
            <position position="137"/>
        </location>
        <ligand>
            <name>IMP</name>
            <dbReference type="ChEBI" id="CHEBI:58053"/>
            <note>ligand shared between dimeric partners</note>
        </ligand>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <position position="151"/>
        </location>
        <ligand>
            <name>IMP</name>
            <dbReference type="ChEBI" id="CHEBI:58053"/>
            <note>ligand shared between dimeric partners</note>
        </ligand>
    </feature>
    <feature type="binding site" description="in other chain" evidence="1">
        <location>
            <position position="247"/>
        </location>
        <ligand>
            <name>IMP</name>
            <dbReference type="ChEBI" id="CHEBI:58053"/>
            <note>ligand shared between dimeric partners</note>
        </ligand>
    </feature>
    <feature type="binding site" description="in other chain" evidence="1">
        <location>
            <position position="262"/>
        </location>
        <ligand>
            <name>IMP</name>
            <dbReference type="ChEBI" id="CHEBI:58053"/>
            <note>ligand shared between dimeric partners</note>
        </ligand>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <begin position="326"/>
            <end position="332"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" description="in other chain" evidence="1">
        <location>
            <position position="330"/>
        </location>
        <ligand>
            <name>IMP</name>
            <dbReference type="ChEBI" id="CHEBI:58053"/>
            <note>ligand shared between dimeric partners</note>
        </ligand>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <position position="332"/>
        </location>
        <ligand>
            <name>GTP</name>
            <dbReference type="ChEBI" id="CHEBI:37565"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <begin position="358"/>
            <end position="360"/>
        </location>
        <ligand>
            <name>GTP</name>
            <dbReference type="ChEBI" id="CHEBI:37565"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <begin position="440"/>
            <end position="442"/>
        </location>
        <ligand>
            <name>GTP</name>
            <dbReference type="ChEBI" id="CHEBI:37565"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000255" key="1">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00011"/>
        </source>
    </evidence>
    <sequence length="458" mass="49523" checksum="B9512DC307DAD7D3" modified="2008-01-15" version="1">MKATKGRNVVVVGTQWGDEGKGKLVDWLTESAQGVVRFQGGHNAGHTLVINGVKTALHLIPSGIMRPGVKCYIGNGVVLSAAKLFEEIEGLEKAGVQVRDRLRVSEACPLILPFHSALDVAREAAREQGGTEKIGTTGRGIGPAYEDKIARRALRVQDLKYPERFATKLRELLALHNHILVNVLGSKNFTFGDALKPYIKDGEVQFDAVYEEAMRHAELLKPMMADVSRELNAAHAEGANLLFEGAQGTLLDVDHGTYPYVTSSNCVAGNAAAGSGVGPGMLHYILGITKAYCTRVGGGPFPTELDWEKEGTPGWHMSTVGAEKGVTTGRSRRCGWFDAALLKRSAQVNGLSGLCITKLDVLDGLQELLLCVGYELDGEKIDLLPMGADEIARCKPIYESIPGWTDSTVGVTDYDKLPANARRYLERIEEVTGVPIAMVSTSPDRDHTILMQNPYAAQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="78" xmlns="http://uniprot.org/uniprot">
    <accession>A9BMY7</accession>
    <name>A9BMY7_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="8">Flavodoxin/nitric oxide synthase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="8" type="ordered locus">Daci_5053</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="9" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>FMN</name>
            <dbReference type="ChEBI" id="CHEBI:58210"/>
        </cofactor>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX37682.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012206852.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_5053"/>
    <dbReference type="PRIDE" id="A9BMY7"/>
    <dbReference type="EnsemblBacteria" id="ABX37682">
        <property type="protein sequence ID" value="ABX37682"/>
        <property type="gene ID" value="Daci_5053"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_5053"/>
    <dbReference type="eggNOG" id="COG0369">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_001570_17_7_4"/>
    <dbReference type="OMA" id="QLFEMMP"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0010181">
        <property type="term" value="F:FMN binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016491">
        <property type="term" value="F:oxidoreductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.360">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.80">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017927">
        <property type="entry name" value="FAD-bd_FR_type"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001094">
        <property type="entry name" value="Flavdoxin-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008254">
        <property type="entry name" value="Flavodoxin/NO_synth"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001709">
        <property type="entry name" value="Flavoprot_Pyr_Nucl_cyt_Rdtase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029039">
        <property type="entry name" value="Flavoprotein-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR039261">
        <property type="entry name" value="FNR_nucleotide-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001433">
        <property type="entry name" value="OxRdtase_FAD/NAD-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017938">
        <property type="entry name" value="Riboflavin_synthase-like_b-brl"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00258">
        <property type="entry name" value="Flavodoxin_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00175">
        <property type="entry name" value="NAD_binding_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00369">
        <property type="entry name" value="FLAVODOXIN"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00371">
        <property type="entry name" value="FPNCR"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52218">
        <property type="entry name" value="SSF52218"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52343">
        <property type="entry name" value="SSF52343"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF63380">
        <property type="entry name" value="SSF63380"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51384">
        <property type="entry name" value="FAD_FR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50902">
        <property type="entry name" value="FLAVODOXIN_LIKE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-0249">Electron transport</keyword>
    <keyword evidence="2" id="KW-0285">Flavoprotein</keyword>
    <keyword evidence="3" id="KW-0288">FMN</keyword>
    <keyword evidence="5" id="KW-0472">Membrane</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="5" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="5" id="KW-1133">Transmembrane helix</keyword>
    <keyword evidence="4" id="KW-0813">Transport</keyword>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="6"/>
            <end position="29"/>
        </location>
    </feature>
    <feature type="domain" description="Flavodoxin-like" evidence="6">
        <location>
            <begin position="55"/>
            <end position="192"/>
        </location>
    </feature>
    <feature type="domain" description="FAD-binding FR-type" evidence="7">
        <location>
            <begin position="206"/>
            <end position="318"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001917"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022630"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022643"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022982"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="PROSITE" id="PS50902"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="PROSITE" id="PS51384"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="ABX37682.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="461" mass="50372" checksum="1475B0914C24C965" modified="2008-01-15" version="1">MTLSETGLRVLAAAVLVLLYAAMCAAIWWRERRQRMRARQEAAALTSAREGALPLLVAYASQTGQAEELARETARLLHTAGESVHLCALDAVDADLLARTQRALFIASTYGEGDPPDNAALFLAHAMAQAQDLSHLQYGLLALGDRQYAQFCGYGRALDSWLRAGGARPWFERIEMDNGAPQALTAWQHQLTQISSLGDMPAWEQPVFSEWTLAARRHMNPRSAGEPVFHIELQPPATEPALWESGDLAQVCIPADPQHPREYSIASIAQDGCVHLLVRQARREDGSPGLASGWLTQGAPLGAAITLRLRAHRNFRLEDNLQRPLVLIGNGTGLAGLRSHLRARAAAGLGPNWLLFGERNAAHDRLYGDELQAWCDGGVLQRLDLAFSRDRSEGAPRAYVQDLLAQSGDVLRQWVAQGAAIYVCGSLQGMAQGVDQALHAVLGEAQMELLVCSGRYRRDVY</sequence>
</entry>
<entry dataset="Swiss-Prot" created="2009-03-24" modified="2022-08-03" version="72" xmlns="http://uniprot.org/uniprot">
    <accession>A9BN40</accession>
    <name>KDSA_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">2-dehydro-3-deoxyphosphooctonate aldolase</fullName>
            <ecNumber evidence="1">2.5.1.55</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="1">3-deoxy-D-manno-octulosonic acid 8-phosphate synthase</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="1">KDO-8-phosphate synthase</fullName>
            <shortName evidence="1">KDO 8-P synthase</shortName>
            <shortName evidence="1">KDOPS</shortName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="1">Phospho-2-dehydro-3-deoxyoctonate aldolase</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="1" type="primary">kdsA</name>
        <name type="ordered locus">Daci_5106</name>
    </gene>
    <organism>
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference key="1">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain>DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>D-arabinose 5-phosphate + H2O + phosphoenolpyruvate = 3-deoxy-alpha-D-manno-2-octulosonate-8-phosphate + phosphate</text>
            <dbReference type="Rhea" id="RHEA:14053"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:43474"/>
            <dbReference type="ChEBI" id="CHEBI:57693"/>
            <dbReference type="ChEBI" id="CHEBI:58702"/>
            <dbReference type="ChEBI" id="CHEBI:85985"/>
            <dbReference type="EC" id="2.5.1.55"/>
        </reaction>
    </comment>
    <comment type="pathway">
        <text evidence="1">Carbohydrate biosynthesis; 3-deoxy-D-manno-octulosonate biosynthesis; 3-deoxy-D-manno-octulosonate from D-ribulose 5-phosphate: step 2/3.</text>
    </comment>
    <comment type="pathway">
        <text evidence="1">Bacterial outer membrane biogenesis; lipopolysaccharide biosynthesis.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="1">Belongs to the KdsA family.</text>
    </comment>
    <dbReference type="EC" id="2.5.1.55" evidence="1"/>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX37735.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012206905.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A9BN40"/>
    <dbReference type="SMR" id="A9BN40"/>
    <dbReference type="STRING" id="398578.Daci_5106"/>
    <dbReference type="PRIDE" id="A9BN40"/>
    <dbReference type="EnsemblBacteria" id="ABX37735">
        <property type="protein sequence ID" value="ABX37735"/>
        <property type="gene ID" value="Daci_5106"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_5106"/>
    <dbReference type="eggNOG" id="COG2877">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_036666_0_0_4"/>
    <dbReference type="OMA" id="FRGIPTM"/>
    <dbReference type="UniPathway" id="UPA00030"/>
    <dbReference type="UniPathway" id="UPA00357">
        <property type="reaction ID" value="UER00474"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008676">
        <property type="term" value="F:3-deoxy-8-phosphooctulonate synthase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0019294">
        <property type="term" value="P:keto-3-deoxy-D-manno-octulosonic acid biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.20.20.70">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00056">
        <property type="entry name" value="KDO8P_synth"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013785">
        <property type="entry name" value="Aldolase_TIM"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006218">
        <property type="entry name" value="DAHP1/KDSA"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006269">
        <property type="entry name" value="KDO8P_synthase"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR21057">
        <property type="entry name" value="PTHR21057"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00793">
        <property type="entry name" value="DAHP_synth_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01362">
        <property type="entry name" value="KDO8P_synth"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword id="KW-0963">Cytoplasm</keyword>
    <keyword id="KW-0448">Lipopolysaccharide biosynthesis</keyword>
    <keyword id="KW-1185">Reference proteome</keyword>
    <keyword id="KW-0808">Transferase</keyword>
    <feature type="chain" id="PRO_1000091810" description="2-dehydro-3-deoxyphosphooctonate aldolase">
        <location>
            <begin position="1"/>
            <end position="285"/>
        </location>
    </feature>
    <evidence type="ECO:0000255" key="1">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00056"/>
        </source>
    </evidence>
    <sequence length="285" mass="30525" checksum="D8FBABB9D2274E33" modified="2008-01-15" version="1">MKLCGFDVGLDRRFFLIAGPCVVESEQLQMDVAGHLKEITAALGIHFIFKSSYDKANRSSGASFRGPGMDKGLEILAKVKKDLQVPILTDVHTESEIPAVSQVVDVLQTPAFLCRQTDFIRAVAQSGRPVNIKKGQFLAPHDMKNVIDKARAAAKEAGLPEDSFMACERGASFGYNNLVSDMRSLSIMRETGAPVVFDATHSVQLPGGNGTSSGGMREMVPVLSRAAVAVGVAGLFMETHPNPPCALSDGPNAVPLKHMKALLETLVALDDVTKKNGFLENDFGV</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-05-25" version="71" xmlns="http://uniprot.org/uniprot">
    <accession>A9BNC7</accession>
    <name>A9BNC7_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">Type II secretion system protein H</fullName>
        </recommendedName>
        <alternativeName>
            <fullName evidence="10">General secretion pathway protein H</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="13" type="ordered locus">Daci_5193</name>
    </gene>
    <organism evidence="13 14">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="13 14" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="14">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="14" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="14">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="2">Cell inner membrane</location>
            <topology evidence="2">Single-pass membrane protein</topology>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Single-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX37822.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_5193"/>
    <dbReference type="EnsemblBacteria" id="ABX37822">
        <property type="protein sequence ID" value="ABX37822"/>
        <property type="gene ID" value="Daci_5193"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_5193"/>
    <dbReference type="eggNOG" id="COG4970">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_084761_1_0_4"/>
    <dbReference type="OMA" id="NTQWGCG"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015627">
        <property type="term" value="C:type II protein secretion system complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015628">
        <property type="term" value="P:protein secretion by the type II secretion system"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012902">
        <property type="entry name" value="N_methyl_site"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045584">
        <property type="entry name" value="Pilin-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR022346">
        <property type="entry name" value="T2SS_GspH"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12019">
        <property type="entry name" value="GspH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07963">
        <property type="entry name" value="N_methyl"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54523">
        <property type="entry name" value="SSF54523"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR02532">
        <property type="entry name" value="IV_pilin_GFxxxE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00409">
        <property type="entry name" value="PROKAR_NTER_METHYL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="6" id="KW-0997">Cell inner membrane</keyword>
    <keyword evidence="4" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="9 11" id="KW-0472">Membrane</keyword>
    <keyword evidence="5" id="KW-0488">Methylation</keyword>
    <keyword evidence="14" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="7 11" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="8 11" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="11">
        <location>
            <begin position="21"/>
            <end position="42"/>
        </location>
    </feature>
    <feature type="domain" description="GspH" evidence="12">
        <location>
            <begin position="58"/>
            <end position="166"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004167"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00004377"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00021549"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022481"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022519"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00030775"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="12">
        <source>
            <dbReference type="Pfam" id="PF12019"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="13">
        <source>
            <dbReference type="EMBL" id="ABX37822.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="14">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="188" mass="19852" checksum="ED2EF697F85F0AC3" modified="2008-01-15" version="1">MHALHLQRLTHAKAPARRRKGFTTLELMVVVAILAILTALAAPSFTPLMERWRVRQVAEDLQATIYFARSEALKRGGNVTIAKAANGNGCANATGNTQWGCGWQVASGNTVLQQTAPPSRVQITLADSTGSIAVDRWGMLSHGGVTAAAAMDLLLVPEGKIASDRSAVRLCTGTGGRIVQMKGSESCS</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="77" xmlns="http://uniprot.org/uniprot">
    <accession>A9BND9</accession>
    <name>A9BND9_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">Aldehyde dehydrogenase</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="9" type="ordered locus">Daci_5205</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="9 10" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="10" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1 3 7">Belongs to the aldehyde dehydrogenase family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX37834.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_5205"/>
    <dbReference type="PRIDE" id="A9BND9"/>
    <dbReference type="EnsemblBacteria" id="ABX37834">
        <property type="protein sequence ID" value="ABX37834"/>
        <property type="gene ID" value="Daci_5205"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_5205"/>
    <dbReference type="eggNOG" id="COG1012">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_005391_3_6_4"/>
    <dbReference type="OMA" id="RRITWAA"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016620">
        <property type="term" value="F:oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006081">
        <property type="term" value="P:cellular aldehyde metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.309.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.605.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016161">
        <property type="entry name" value="Ald_DH/histidinol_DH"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016163">
        <property type="entry name" value="Ald_DH_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016160">
        <property type="entry name" value="Ald_DH_CS_CYS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029510">
        <property type="entry name" value="Ald_DH_CS_GLU"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016162">
        <property type="entry name" value="Ald_DH_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015590">
        <property type="entry name" value="Aldehyde_DH_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012394">
        <property type="entry name" value="Aldehyde_DH_NAD(P)"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43570">
        <property type="entry name" value="PTHR43570"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00171">
        <property type="entry name" value="Aldedh"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF036492">
        <property type="entry name" value="ALDH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53720">
        <property type="entry name" value="SSF53720"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00070">
        <property type="entry name" value="ALDEHYDE_DEHYDR_CYS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00687">
        <property type="entry name" value="ALDEHYDE_DEHYDR_GLU"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2 3 7" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Aldedh" evidence="8">
        <location>
            <begin position="16"/>
            <end position="467"/>
        </location>
    </feature>
    <feature type="active site" evidence="4 5">
        <location>
            <position position="233"/>
        </location>
    </feature>
    <feature type="active site" evidence="4 6">
        <location>
            <position position="267"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00009986"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023002"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="PIRNR" id="PIRNR036492"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="PIRSR" id="PIRSR036492-1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU10007"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU10008"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="RuleBase" id="RU003345"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="Pfam" id="PF00171"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="ABX37834.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="498" mass="55036" checksum="F7E4F5F01DBCEDEA" modified="2008-01-15" version="1">MCRDASLECGACKCLLTIEPMTQLDLHRVFDLQYQASRAQVDVPLLVRRERLLRMQKLLDEHGPVLAAAVQADFGMRSPRLTEMVELFVLRNLLKHTLRHLARWSGRQRVRTPLMLMPGRGWIERQPLGVVGVISPWNYPVQLALGPAITALAAGNRVMLKPSELTPHTSAQLAALVGQFFAPEEFAVIEGDVSIATQFSGLHFDHLLFTGSTAVGRRVAQAAAAHLTPTTLELGGKSPCIISTDCDLKEAALKIAHGKLVNAGQTCIAPDYVLLPRGQEAEFAEAFRTAARRLFPRFAGNPDYAAILTKRHLARLRQMLRQAQGMGAHVEWMEDGGAGQESADTAWGDAVERQMAPALVFNATSQMQLMQEEIFGPILPVISYDRLDDVVSAINAGPRPLALYWFGRDEKVRDAVLSRTISGGVTVNDTLLHFAHENLPFGGVGDSGWGAYHSEQGFARLSHQKAVFVQSRWSGASMLYPPYGARFDRIMELMRRWL</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="63" xmlns="http://uniprot.org/uniprot">
    <accession>A9BPB9</accession>
    <name>A9BPB9_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="6">Methyl-accepting chemotaxis sensory transducer</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ordered locus">Daci_0036</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="7" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the methyl-accepting chemotaxis (MCP) protein family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX32683.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012201976.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_0036"/>
    <dbReference type="PRIDE" id="A9BPB9"/>
    <dbReference type="EnsemblBacteria" id="ABX32683">
        <property type="protein sequence ID" value="ABX32683"/>
        <property type="gene ID" value="Daci_0036"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_0036"/>
    <dbReference type="eggNOG" id="COG0840">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_000445_107_16_4"/>
    <dbReference type="OMA" id="LGMFRIH"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004888">
        <property type="term" value="F:transmembrane signaling receptor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006935">
        <property type="term" value="P:chemotaxis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0007165">
        <property type="term" value="P:signal transduction"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004090">
        <property type="entry name" value="Chemotax_Me-accpt_rcpt"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003660">
        <property type="entry name" value="HAMP_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR024478">
        <property type="entry name" value="HlyB_4HB_MCP"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004089">
        <property type="entry name" value="MCPsignal_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12729">
        <property type="entry name" value="4HB_MCP_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00672">
        <property type="entry name" value="HAMP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00015">
        <property type="entry name" value="MCPsignal"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00260">
        <property type="entry name" value="CHEMTRNSDUCR"/>
    </dbReference>
    <dbReference type="SMART" id="SM00304">
        <property type="entry name" value="HAMP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00283">
        <property type="entry name" value="MA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50111">
        <property type="entry name" value="CHEMOTAXIS_TRANSDUC_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50885">
        <property type="entry name" value="HAMP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0807">Transducer</keyword>
    <feature type="domain" description="HAMP" evidence="5">
        <location>
            <begin position="218"/>
            <end position="270"/>
        </location>
    </feature>
    <feature type="domain" description="Methyl-accepting transducer" evidence="4">
        <location>
            <begin position="275"/>
            <end position="504"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="3">
        <location>
            <begin position="529"/>
            <end position="567"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00029447"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00284"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="PROSITE" id="PS50111"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="PROSITE" id="PS50885"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="ABX32683.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="567" mass="60277" checksum="44497B4747920465" modified="2008-01-15" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-05-25" version="63" xmlns="http://uniprot.org/uniprot">
    <accession>A9BPG9</accession>
    <name>A9BPG9_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Alcohol dehydrogenase zinc-binding domain protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_0190</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX32836.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012202129.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_0190"/>
    <dbReference type="EnsemblBacteria" id="ABX32836">
        <property type="protein sequence ID" value="ABX32836"/>
        <property type="gene ID" value="Daci_0190"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_0190"/>
    <dbReference type="eggNOG" id="COG0604">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_026673_3_1_4"/>
    <dbReference type="OMA" id="ACAINRH"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016491">
        <property type="term" value="F:oxidoreductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013149">
        <property type="entry name" value="ADH-like_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013154">
        <property type="entry name" value="ADH_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011032">
        <property type="entry name" value="GroES-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036291">
        <property type="entry name" value="NAD(P)-bd_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020843">
        <property type="entry name" value="PKS_ER"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08240">
        <property type="entry name" value="ADH_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00107">
        <property type="entry name" value="ADH_zinc_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00829">
        <property type="entry name" value="PKS_ER"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50129">
        <property type="entry name" value="SSF50129"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51735">
        <property type="entry name" value="SSF51735"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="PKS_ER" evidence="1">
        <location>
            <begin position="11"/>
            <end position="332"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="SMART" id="SM00829"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX32836.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="339" mass="35727" checksum="C4F117D915053AA7" modified="2008-01-15" version="1">MQALVCHQFGAPHEVVSLQSMDRPGQPLGAHQARIAVAYANVSHATGLLIEGRYQRRPPLPFVPGTEGVGRVLECGSAVQHLQPGDAVAFIADWGAFAQETVVHASTVYRLPAGTPWLQALPIPLSYGTAYTALHWRARLQEGDVVLVLGAGSGVGAAAVEVARQTPGVQVIACASTEAKRADALRRGAHQAVTPQDLAAQVKQATQGRGASLVFDPVGGDLLLQALRAAAQNAQLLSVGFASGAIPAVPMNLALVKNLTLHGFFYGRYIGWTPADERQAFAAQLQPVIATLLDWAARGCIHPQVSQVYEMHELPAALDALHGRNVTGKLALAIQGDKV</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="65" xmlns="http://uniprot.org/uniprot">
    <accession>A9BPY7</accession>
    <name>A9BPY7_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Miro domain protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_0556</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX33202.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012202488.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_0556"/>
    <dbReference type="PRIDE" id="A9BPY7"/>
    <dbReference type="EnsemblBacteria" id="ABX33202">
        <property type="protein sequence ID" value="ABX33202"/>
        <property type="gene ID" value="Daci_0556"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_0556"/>
    <dbReference type="eggNOG" id="COG2229">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_077970_2_0_4"/>
    <dbReference type="OMA" id="GVDDNYG"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005525">
        <property type="term" value="F:GTP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006073">
        <property type="entry name" value="GTP-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01926">
        <property type="entry name" value="MMR_HSR1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="G" evidence="1">
        <location>
            <begin position="15"/>
            <end position="131"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF01926"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX33202.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="187" mass="19773" checksum="9A940A93C25B0F2F" modified="2008-01-15" version="1">MSLWMNAQPAAGLVRVSLVGPMGIGKTTALRSLCGALMAAADVPNLDRASHSKEFTTVGAEFGEIDLGGGERLQLVGSPGQERFDFVRRWVLNASVGVLLMVDVCDARAPDYAAQCLAEIASLESEPLVVVVSCRDASEQQQEAFSSALADRGHGIVPVIQADPRDRQQLLDALGVLVSLLSLQSQA</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="77" xmlns="http://uniprot.org/uniprot">
    <accession>A9BQ48</accession>
    <name>A9BQ48_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">Flagellin</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="6" type="ordered locus">Daci_0617</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="7" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="3">Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="3">Secreted</location>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="3">Bacterial flagellum</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="1 3">Belongs to the bacterial flagellin family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX33263.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012202549.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_0617"/>
    <dbReference type="PRIDE" id="A9BQ48"/>
    <dbReference type="EnsemblBacteria" id="ABX33263">
        <property type="protein sequence ID" value="ABX33263"/>
        <property type="gene ID" value="Daci_0617"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_0617"/>
    <dbReference type="eggNOG" id="COG1344">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_011142_2_2_4"/>
    <dbReference type="OMA" id="IASQTTY"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009288">
        <property type="term" value="C:bacterial-type flagellum"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005576">
        <property type="term" value="C:extracellular region"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005198">
        <property type="term" value="F:structural molecule activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="6.10.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001492">
        <property type="entry name" value="Flagellin"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR046358">
        <property type="entry name" value="Flagellin_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR042187">
        <property type="entry name" value="Flagellin_C_sub2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001029">
        <property type="entry name" value="Flagellin_N"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR42792">
        <property type="entry name" value="PTHR42792"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00700">
        <property type="entry name" value="Flagellin_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00669">
        <property type="entry name" value="Flagellin_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00207">
        <property type="entry name" value="FLAGELLIN"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2 3" id="KW-0975">Bacterial flagellum</keyword>
    <keyword evidence="6" id="KW-0966">Cell projection</keyword>
    <keyword evidence="6" id="KW-0969">Cilium</keyword>
    <keyword evidence="6" id="KW-0282">Flagellum</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0964">Secreted</keyword>
    <feature type="domain" description="Flagellin_N" evidence="4">
        <location>
            <begin position="5"/>
            <end position="140"/>
        </location>
    </feature>
    <feature type="domain" description="Flagellin_C" evidence="5">
        <location>
            <begin position="197"/>
            <end position="282"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00005709"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023143"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="RuleBase" id="RU362073"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="Pfam" id="PF00669"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="Pfam" id="PF00700"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="ABX33263.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="283" mass="29454" checksum="76C3A07E6AD07B76" modified="2008-01-15" version="1">MAMSINTNVQSLNAQRNLSTSQSSLSTTMQRLSSGLRVNSAKDDAAGLAIAERMNAQVRGMNVAVRNANDGVSMAQTAEGALSKVTDALQRMRELAVQARNGTNGAKDQVSLNKEFVELGKEIDRVIKGADFNGKKILSTDSGAINFQVGANTSANDSITVTTSDLGTNADITGITSASIGSDATTALDATALATVISNLDTALDTVNSERAVLGATQNRFEAVVSNLQVASENTASARSRIMDADFASETANLSRSQILQQAGTAMVAQANQLPQGVLALLR</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="75" xmlns="http://uniprot.org/uniprot">
    <accession>A9BQ61</accession>
    <name>A9BQ61_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="3 5">Flagellar hook protein FlgE</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="9" type="ordered locus">Daci_0630</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="9 10" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="10" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1 5">Bacterial flagellum basal body</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2 5">Belongs to the flagella basal body rod proteins family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX33276.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012202562.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_0630"/>
    <dbReference type="PRIDE" id="A9BQ61"/>
    <dbReference type="EnsemblBacteria" id="ABX33276">
        <property type="protein sequence ID" value="ABX33276"/>
        <property type="gene ID" value="Daci_0630"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_0630"/>
    <dbReference type="eggNOG" id="COG1749">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_013687_2_0_4"/>
    <dbReference type="OMA" id="LYGTYTN"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009425">
        <property type="term" value="C:bacterial-type flagellum basal body"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.98.20">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011491">
        <property type="entry name" value="Falgellar_hook_FlgE"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037058">
        <property type="entry name" value="Falgellar_hook_FlgE_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001444">
        <property type="entry name" value="Flag_bb_rod_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020013">
        <property type="entry name" value="Flagellar_FlgE/F/G"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010930">
        <property type="entry name" value="Flg_bb/hook_C_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037925">
        <property type="entry name" value="FlgE/F/G-like"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07559">
        <property type="entry name" value="FlaE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00460">
        <property type="entry name" value="Flg_bb_rod"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF06429">
        <property type="entry name" value="Flg_bbr_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF117143">
        <property type="entry name" value="SSF117143"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR03506">
        <property type="entry name" value="FlgEFG_subfam"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4 5" id="KW-0975">Bacterial flagellum</keyword>
    <keyword evidence="9" id="KW-0966">Cell projection</keyword>
    <keyword evidence="9" id="KW-0969">Cilium</keyword>
    <keyword evidence="9" id="KW-0282">Flagellum</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Flg_bb_rod" evidence="6">
        <location>
            <begin position="3"/>
            <end position="33"/>
        </location>
    </feature>
    <feature type="domain" description="FlaE" evidence="8">
        <location>
            <begin position="189"/>
            <end position="304"/>
        </location>
    </feature>
    <feature type="domain" description="Flg_bbr_C" evidence="7">
        <location>
            <begin position="344"/>
            <end position="422"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004117"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00009677"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00019015"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023143"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="RuleBase" id="RU362116"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="Pfam" id="PF00460"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="Pfam" id="PF06429"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="Pfam" id="PF07559"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="ABX33276.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="423" mass="43238" checksum="4683ED9BCD92CDF0" modified="2008-01-15" version="1">MGFQQGLSGLNAASKNLDVIGHNIANANTTGFKSSRAEFAEAVASAVGSASGQNSGIGVNVAAVTQQFRQGPITTTGNNLDVAINGNGFFVVRQPDGSTAYTRAGNFGLDKQGNLKTVQGDNVMGYPVDATTGKVLAGGQPVPMVFPSGQPIAAKTTTKIDVSLNLDARATPAAGNSTATPPVPATPRATYGTSINVYDSQGVPTPVQMYFEKDAASNTWKVYDGLDDPTASPPKVATLLTTLVFDASGKITSGSPVTAQIKSSNPNAPTPGTINGTAGVTLDFSNVSQFGSKFAVSSLKQDGYTAGALTGINVGNDGSIVATYSNGVTRTEGQLALAAFTNTQGLGAVGDNKWVETSDSGPALNGTAESGTFGSLRSGALEDSNVDLTAELVNMMTAQRAYQANAQTIKTQDQVFSTLVNLR</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="84" xmlns="http://uniprot.org/uniprot">
    <accession>A9BQB4</accession>
    <name>A9BQB4_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Transcriptional regulator, LysR family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ordered locus">Daci_0878</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="5" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the LysR transcriptional regulatory family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX33524.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012202810.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_0878"/>
    <dbReference type="PRIDE" id="A9BQB4"/>
    <dbReference type="EnsemblBacteria" id="ABX33524">
        <property type="protein sequence ID" value="ABX33524"/>
        <property type="gene ID" value="Daci_0878"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_0878"/>
    <dbReference type="eggNOG" id="COG0583">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_039613_37_1_4"/>
    <dbReference type="OMA" id="IAIYYGK"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003700">
        <property type="term" value="F:DNA-binding transcription factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005119">
        <property type="entry name" value="LysR_subst-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000847">
        <property type="entry name" value="Tscrpt_reg_HTH_LysR"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036390">
        <property type="entry name" value="WH_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00126">
        <property type="entry name" value="HTH_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03466">
        <property type="entry name" value="LysR_substrate"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00039">
        <property type="entry name" value="HTHLYSR"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46785">
        <property type="entry name" value="SSF46785"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50931">
        <property type="entry name" value="HTH_LYSR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HTH lysR-type" evidence="3">
        <location>
            <begin position="8"/>
            <end position="65"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="313"/>
            <end position="336"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00009437"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="PROSITE" id="PS50931"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="ABX33524.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="336" mass="36645" checksum="5278ABEB3C133554" modified="2008-01-15" version="1">MSLRRLNPPTHLLRAFSTVVRFGGVSRAAEALHLTQSAVSKQIQELEKWVGVPLFERERKRLRLTPAGERYERAVRALLGQLEAATLELITSDDSRGALHLSSLPTFAAKWLIPRLPQFQQRYPQITLHFVPYVHSYQFDSPGLDCAILFGDGHWNGAHAHYLVGRQVALIAPPRGAGPEARITTPQDVARCTRLRHVTIPDAWARWSEAHGVNGISPLAGPQFDQFQTIIRAVMAGMGIALVPRCLVHDEIAAGLVNEPLPQHGYQSALGYWLCYPADRANHGTLGIFRNWLVDHAAQTPGRIAVAPVAPGESAAAGEAPPPTPQAWATAASAAP</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="59" xmlns="http://uniprot.org/uniprot">
    <accession>A9BQE9</accession>
    <name>A9BQE9_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Peptidylprolyl isomerase, FKBP-type</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Daci_0913</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="2" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX33559.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_0913"/>
    <dbReference type="PRIDE" id="A9BQE9"/>
    <dbReference type="EnsemblBacteria" id="ABX33559">
        <property type="protein sequence ID" value="ABX33559"/>
        <property type="gene ID" value="Daci_0913"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_0913"/>
    <dbReference type="eggNOG" id="COG1047">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_098197_1_1_4"/>
    <dbReference type="OMA" id="KVWKPGM"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003755">
        <property type="term" value="F:peptidyl-prolyl cis-trans isomerase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.10.50.40">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR046357">
        <property type="entry name" value="PPIase_dom_sf"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0413">Isomerase</keyword>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ABX33559.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="174" mass="18646" checksum="9281853495B7DD3E" modified="2008-01-15" version="1">MAALRGAPSALRFSKAFAMNITKDTAVTINYKITDKLGKLLDKGDVAYLHGGYDNIFAKVEAALDGKAVGDTLTVDLAVEDAFGARDESLTRTIPKGEFPPGVKVGGQLRGTDDQGQPQIYHVVKIKGPVVLLDGNHPLAGMALHFACKVTEVRAAKPEEIEHRHVHGGHGHHH</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="60" xmlns="http://uniprot.org/uniprot">
    <accession>A9BQN5</accession>
    <name>A9BQN5_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Enoyl-CoA hydratase/isomerase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_0090</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the enoyl-CoA hydratase/isomerase family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX32737.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012202030.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_0090"/>
    <dbReference type="PRIDE" id="A9BQN5"/>
    <dbReference type="EnsemblBacteria" id="ABX32737">
        <property type="protein sequence ID" value="ABX32737"/>
        <property type="gene ID" value="Daci_0090"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_0090"/>
    <dbReference type="eggNOG" id="COG1024">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_009834_7_2_4"/>
    <dbReference type="OMA" id="NPPHAVR"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016853">
        <property type="term" value="F:isomerase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.12.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029045">
        <property type="entry name" value="ClpP/crotonase-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001753">
        <property type="entry name" value="Enoyl-CoA_hydra/iso"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014748">
        <property type="entry name" value="Enoyl-CoA_hydra_C"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00378">
        <property type="entry name" value="ECH_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52096">
        <property type="entry name" value="SSF52096"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2" id="KW-0413">Isomerase</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00005254"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX32737.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="262" mass="28231" checksum="7769342BFCC0EE71" modified="2008-01-15" version="1">MPFLNIARDGAIWTLTMNLPETRNALTGNTAVEEFVQVCDEIRRDASVKAVILTGAGPIFSSGGNVKDMQRFFDDALTPDAIREEYRQGIQRIPRALTQLDVPVICAINGPAIGAGLDLTCMCDIRIASETATFAESFVRVGIVPGDGGAWLLPRAVGRAKAAEMAFTGEAIDAQQALACGLVSRVVPADQLLPTARALADKIAANPGAVMRMTKRLLREGEHSTLESLLELSAGYQALAHKTADHREAVMAFVEKRKPRFQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="89" xmlns="http://uniprot.org/uniprot">
    <accession>A9BQR1</accession>
    <name>A9BQR1_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Transcriptional regulator, AraC family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_0117</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX32763.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012202056.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_0117"/>
    <dbReference type="PRIDE" id="A9BQR1"/>
    <dbReference type="EnsemblBacteria" id="ABX32763">
        <property type="protein sequence ID" value="ABX32763"/>
        <property type="gene ID" value="Daci_0117"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_0117"/>
    <dbReference type="eggNOG" id="COG2207">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_052345_1_1_4"/>
    <dbReference type="OMA" id="FTQTHLA"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003700">
        <property type="term" value="F:DNA-binding transcription factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043565">
        <property type="term" value="F:sequence-specific DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009057">
        <property type="entry name" value="Homeobox-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018060">
        <property type="entry name" value="HTH_AraC"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020449">
        <property type="entry name" value="Tscrpt_reg_HTH_AraC-type"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12833">
        <property type="entry name" value="HTH_18"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00032">
        <property type="entry name" value="HTHARAC"/>
    </dbReference>
    <dbReference type="SMART" id="SM00342">
        <property type="entry name" value="HTH_ARAC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46689">
        <property type="entry name" value="SSF46689"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01124">
        <property type="entry name" value="HTH_ARAC_FAMILY_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HTH araC/xylS-type" evidence="1">
        <location>
            <begin position="239"/>
            <end position="341"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS01124"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX32763.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="342" mass="37433" checksum="D9041423D48E5AF8" modified="2008-01-15" version="1">MALSSVQTPARPPRWLGRGTLRACDFSGPDYRILDAEVTAEDALLAGHLQSWQVQPGLWLHGVEARDLRTMSTRSPAVPGLHLVVLLEGCVDVAFGSQGLQMQVAPASPAGAHVQACGAVIHSRPGDMFMRHWRRGKFERKLSITVQPQWFAAQALPMVAPPLLRHWMEQQLLAIRPWQPSPRAVAVAEQIIQLAREGSAPLLLASRTLELVHEAVQALDAPEPDPAQTVPGVLGVREHRRMARLKALLDSGGDGCRPLAEIAREVGLSASALQRQFRLAYGSSIDEYRREQRLERAWAALEQTGCSVSEVAHAAGYSSAANFSTAFKRRFGISPKLVRARL</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="64" xmlns="http://uniprot.org/uniprot">
    <accession>A9BQR2</accession>
    <name>A9BQR2_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">FAD-binding 9 siderophore-interacting domain protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_0118</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX32764.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012202057.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_0118"/>
    <dbReference type="PRIDE" id="A9BQR2"/>
    <dbReference type="EnsemblBacteria" id="ABX32764">
        <property type="protein sequence ID" value="ABX32764"/>
        <property type="gene ID" value="Daci_0118"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_0118"/>
    <dbReference type="eggNOG" id="COG2375">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_040923_0_0_4"/>
    <dbReference type="OMA" id="PYAWIAG"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016491">
        <property type="term" value="F:oxidoreductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.80">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013113">
        <property type="entry name" value="FAD-bd_9_SIP"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017927">
        <property type="entry name" value="FAD-bd_FR_type"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR039261">
        <property type="entry name" value="FNR_nucleotide-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017938">
        <property type="entry name" value="Riboflavin_synthase-like_b-brl"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007037">
        <property type="entry name" value="SIP_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR039374">
        <property type="entry name" value="SIP_fam"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30157">
        <property type="entry name" value="PTHR30157"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08021">
        <property type="entry name" value="FAD_binding_9"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04954">
        <property type="entry name" value="SIP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF63380">
        <property type="entry name" value="SSF63380"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51384">
        <property type="entry name" value="FAD_FR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="FAD-binding FR-type" evidence="1">
        <location>
            <begin position="105"/>
            <end position="234"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS51384"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX32764.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="370" mass="40770" checksum="3B6F9B8B729E2D6E" modified="2008-01-15" version="1">MTQLQARTSVRMDRAEEAIAAIVGHMQEHDITVRREGSRWVADYEGGQGQLWLEGRQVHAEVAAPGVELLQDMKLMLAHLLLEATGAADGSLAWEGDGAALQRPPAFRELRVLAVRDLTPHMRRVRFACDDMARYAQDTNIHVKLLFPQPGVAEPEWPTLSASGLLRLPEGDMRLDMRTYTMRAMGMAQDGANGWMDVDFVLHEDAGPGSAWAARAQPGQRIGMTGPGGRTATPADWMLLAGDDTGLPAMLRIAAALPAHTRGHVFAEVQGPQDEQPVQAPEGLQWHWLHRGAAEAGTTTLLIDALRAVRWPDALAGHPPSRFVWAAGEFDTAQAVRQWAREERGLEKHEQLIVAYWRRGMSESDFKAAK</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="63" xmlns="http://uniprot.org/uniprot">
    <accession>A9BQV5</accession>
    <name>A9BQV5_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Extracellular ligand-binding receptor</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ordered locus">Daci_0264</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="6" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the leucine-binding protein family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX32910.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012202203.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_0264"/>
    <dbReference type="PRIDE" id="A9BQV5"/>
    <dbReference type="EnsemblBacteria" id="ABX32910">
        <property type="protein sequence ID" value="ABX32910"/>
        <property type="gene ID" value="Daci_0264"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_0264"/>
    <dbReference type="eggNOG" id="COG0683">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_027128_6_2_4"/>
    <dbReference type="OMA" id="HDYAKAW"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006865">
        <property type="term" value="P:amino acid transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR028081">
        <property type="entry name" value="Leu-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000709">
        <property type="entry name" value="Leu_Ile_Val-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR028082">
        <property type="entry name" value="Peripla_BP_I"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006311">
        <property type="entry name" value="TAT_signal"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13458">
        <property type="entry name" value="Peripla_BP_6"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00337">
        <property type="entry name" value="LEUILEVALBP"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53822">
        <property type="entry name" value="SSF53822"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51318">
        <property type="entry name" value="TAT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2" id="KW-0029">Amino-acid transport</keyword>
    <keyword evidence="5" id="KW-0675">Receptor</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0732">Signal</keyword>
    <keyword evidence="2" id="KW-0813">Transport</keyword>
    <feature type="signal peptide" evidence="3">
        <location>
            <begin position="1"/>
            <end position="30"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5002735939" evidence="3">
        <location>
            <begin position="31"/>
            <end position="391"/>
        </location>
    </feature>
    <feature type="domain" description="Peripla_BP_6" evidence="4">
        <location>
            <begin position="34"/>
            <end position="345"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00010062"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022970"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="Pfam" id="PF13458"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="ABX32910.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="391" mass="41402" checksum="447D4A0ABDEA0189" modified="2008-01-15" version="1">MTAFAPLTRRRVGTLALACAAVAAAGPALAQEVVKIGYSGPLSGGAAQYGKNVLDGMQMAVSEINAAAPEIGGKKVKIEIVPLDDKYNPSETAINAQRLVQQHKTAAILVPHSGGIFALQTTNERSNFIVLAYSSVPQITNRGNKLTLRIPPEFTSYIDPFSKYVMGRFGKKVALVGADHDYAKAWVAAFKPGWEKLGGTVVAENAMSYNRATDFYSGVSKALAEKPDVLFVGGASEPTALVVKQARELGFKGGFVVMDQAKLDEMARVVGGYAPLEGAIGVMPVSEDTKPENKAFVERFGKVYPGRIPGSEAQWNYTAVHATVKAMQLAGSASDTKAIHAKLDEAYKSLRPDVNPGGVKGVDERGGTLTTERGAAVRDGKIEAVMTVGSR</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="55" xmlns="http://uniprot.org/uniprot">
    <accession>A9BQW8</accession>
    <name>A9BQW8_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ordered locus">Daci_0277</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="5" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Periplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the UPF0065 (bug) family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX32923.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012202216.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_0277"/>
    <dbReference type="PRIDE" id="A9BQW8"/>
    <dbReference type="EnsemblBacteria" id="ABX32923">
        <property type="protein sequence ID" value="ABX32923"/>
        <property type="gene ID" value="Daci_0277"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_0277"/>
    <dbReference type="eggNOG" id="COG3181">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_045683_0_1_4"/>
    <dbReference type="OMA" id="EDWYGFF"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0042597">
        <property type="term" value="C:periplasmic space"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.190.150">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005064">
        <property type="entry name" value="BUG"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR042100">
        <property type="entry name" value="Bug_dom1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR42928">
        <property type="entry name" value="PTHR42928"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03401">
        <property type="entry name" value="TctC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF017082">
        <property type="entry name" value="YflP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="3">
        <location>
            <begin position="1"/>
            <end position="26"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5002732428" evidence="3">
        <location>
            <begin position="27"/>
            <end position="332"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004418"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00006987"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="ABX32923.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="332" mass="34703" checksum="321F1880FAB3C5F3" modified="2008-01-15" version="1">MFAILNLARMLAASLAALAMLSQATAEPLAARNGYPAQPIRFISPFPPGGGNDASTRWVTTRLTEATGQPSVVENRGGAGGNIGAKAVAEAKPDGYTVLTGQVSLMAVNPALYSAPGFDPLKNFVPITQINAAPLAIVVASASPLKSFADLVARSKGEPGRVTYATPGNGTLSHLVGVVLSKENGVPMTHVPYKGAGPAINDLLGQQVDVLITSTSSVAGMIQAGQVRALAVTSPRRIGVFGKVPTLEELGLRNARFEDWYGFFAPAGTPPERVAFLHDAIVRTLQLPEVTKLVVDGGSEVVANTPEAFAAQLRQDMERWSRVVKLSGAKID</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-01-19" version="36" xmlns="http://uniprot.org/uniprot">
    <accession>A9BR82</accession>
    <name>A9BR82_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Daci_0494</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="2" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX33140.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012202426.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_0494"/>
    <dbReference type="EnsemblBacteria" id="ABX33140">
        <property type="protein sequence ID" value="ABX33140"/>
        <property type="gene ID" value="Daci_0494"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_0494"/>
    <dbReference type="eggNOG" id="COG3636">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_191274_1_0_4"/>
    <dbReference type="OMA" id="ECMAEIF"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ABX33140.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="63" mass="6971" checksum="5DB1D4A6147962EF" modified="2008-01-15" version="1">MKSRPHDEAMAELYRSDPALALEVINGVLEDGDQAELPTVLRQMARTFGADARSSAADEFSYR</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="49" xmlns="http://uniprot.org/uniprot">
    <accession>A9BRC1</accession>
    <name>A9BRC1_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ordered locus">Daci_0533</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="5" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Periplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the UPF0065 (bug) family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX33179.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_0533"/>
    <dbReference type="PRIDE" id="A9BRC1"/>
    <dbReference type="EnsemblBacteria" id="ABX33179">
        <property type="protein sequence ID" value="ABX33179"/>
        <property type="gene ID" value="Daci_0533"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_0533"/>
    <dbReference type="eggNOG" id="COG3181">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_045683_0_0_4"/>
    <dbReference type="OMA" id="HMAFAEF"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0042597">
        <property type="term" value="C:periplasmic space"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.190.150">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005064">
        <property type="entry name" value="BUG"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR042100">
        <property type="entry name" value="Bug_dom1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR42928">
        <property type="entry name" value="PTHR42928"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03401">
        <property type="entry name" value="TctC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF017082">
        <property type="entry name" value="YflP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="3">
        <location>
            <begin position="1"/>
            <end position="36"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5002735006" evidence="3">
        <location>
            <begin position="37"/>
            <end position="344"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004418"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00006987"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="ABX33179.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="344" mass="36828" checksum="4052D1B1971E8045" modified="2008-01-15" version="1">MIHRISLHTMRPSFFRSWIPAAAAALAVFGSTAAVAADSAASWPHQPVTMILGFPAGSGVDVIARGVQEPLSQRLGQPLIIDYKSGAAGNIASEIVARAKPDGYTLAFGTAATHGSNAALYKKLPFDVETDFVPVAPLIDVSNVLTINPNVINVKNLKEFVDEIKANPGKYNYASTGNGAGTHMAFAEFNARLGLNMVHVPYKGGPEAITSVLRGETCCIMNQVQTVLPHYKSGKVRLLGVTTAKPVEVIKEVPTIASSGLTGTKGFDSSIWFGIFAPKGTDPAIVAKLSQAVREVLELPEVRARFESQGNAIRIETPEQFKKTVHNDRLKWAQVVKDAKISID</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="61" xmlns="http://uniprot.org/uniprot">
    <accession>A9BRE1</accession>
    <name>A9BRE1_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">CheW protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_0656</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX33302.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012202588.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_0656"/>
    <dbReference type="PRIDE" id="A9BRE1"/>
    <dbReference type="EnsemblBacteria" id="ABX33302">
        <property type="protein sequence ID" value="ABX33302"/>
        <property type="gene ID" value="Daci_0656"/>
    </dbReference>
    <dbReference type="GeneID" id="60690997"/>
    <dbReference type="KEGG" id="dac:Daci_0656"/>
    <dbReference type="eggNOG" id="COG0835">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_048995_1_0_4"/>
    <dbReference type="OMA" id="CVNIMSV"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006935">
        <property type="term" value="P:chemotaxis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0007165">
        <property type="term" value="P:signal transduction"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR039315">
        <property type="entry name" value="CheW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036061">
        <property type="entry name" value="CheW-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002545">
        <property type="entry name" value="CheW-lke_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR22617">
        <property type="entry name" value="PTHR22617"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01584">
        <property type="entry name" value="CheW"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00260">
        <property type="entry name" value="CheW"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50341">
        <property type="entry name" value="SSF50341"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50851">
        <property type="entry name" value="CHEW"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="CheW-like" evidence="1">
        <location>
            <begin position="15"/>
            <end position="155"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS50851"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX33302.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="162" mass="17709" checksum="28532663AEEAEF2F" modified="2008-01-15" version="1">MSVIAKTAEGVATGAREYLTFRLDQEEYGIDILKVQEIRGYEPPTRIANAPEFIKGVVNLRGTIVPIVDMRLKFNCSQVEYNSFTVVIILNLRNRVVGIVVDSVSDVMELAPEAVRPAPDIESAIDSGCILGLGSVGERMLILLDIEKLMNNVDMGLVASVD</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="61" xmlns="http://uniprot.org/uniprot">
    <accession>A9BRM2</accession>
    <name>A9BRM2_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Metal dependent phosphohydrolase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_0737</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX33383.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012202669.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_0737"/>
    <dbReference type="PRIDE" id="A9BRM2"/>
    <dbReference type="EnsemblBacteria" id="ABX33383">
        <property type="protein sequence ID" value="ABX33383"/>
        <property type="gene ID" value="Daci_0737"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_0737"/>
    <dbReference type="eggNOG" id="COG3437">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_000445_92_3_4"/>
    <dbReference type="OMA" id="HMSRELA"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008081">
        <property type="term" value="F:phosphoric diester hydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="CDD" id="cd00077">
        <property type="entry name" value="HDc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003607">
        <property type="entry name" value="HD/PDEase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006674">
        <property type="entry name" value="HD_domain"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037522">
        <property type="entry name" value="HD_GYP_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01966">
        <property type="entry name" value="HD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00471">
        <property type="entry name" value="HDc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51832">
        <property type="entry name" value="HD_GYP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HD-GYP" evidence="1">
        <location>
            <begin position="45"/>
            <end position="242"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS51832"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX33383.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="254" mass="28325" checksum="E7577AD53528A04F" modified="2008-01-15" version="1">MAQYQTGNPREPSRRFDPAAVEQMEQLIQDFGRMYRERNDLLKEVTRAHHETLLRLAMAAELKDDDTGSHIVRIGYLSEALALRLGCRIEFASLLRKAAPMHDIGKVGIPDTILKKGGPLDPQERLVMNRHAEIGARLLGQSRIPVFQMAAEIAASHHERFDGKGYPEGLAGEEIPLSARITSIVDIFDALTMDRVYRPAFGLEQALEMIAAERGKALDPGIVDAFMDNIEELDALRLALTRQAPSFTELIDTP</sequence>
</entry>
<entry dataset="Swiss-Prot" created="2009-04-14" modified="2022-08-03" version="78" xmlns="http://uniprot.org/uniprot">
    <accession>A9BRT1</accession>
    <name>HPRK_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">HPr kinase/phosphorylase</fullName>
            <shortName evidence="1">HPrK/P</shortName>
            <ecNumber evidence="1">2.7.11.-</ecNumber>
            <ecNumber evidence="1">2.7.4.-</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="1">HPr(Ser) kinase/phosphorylase</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="1" type="primary">hprK</name>
        <name type="ordered locus">Daci_1002</name>
    </gene>
    <organism>
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference key="1">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain>DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="1">Catalyzes the ATP- as well as the pyrophosphate-dependent phosphorylation of a specific serine residue in HPr, a phosphocarrier protein of the phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS). HprK/P also catalyzes the pyrophosphate-producing, inorganic phosphate-dependent dephosphorylation (phosphorolysis) of seryl-phosphorylated HPr (P-Ser-HPr).</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>[HPr protein]-L-serine + ATP = [HPr protein]-O-phospho-L-serine + ADP + H(+)</text>
            <dbReference type="Rhea" id="RHEA:46600"/>
            <dbReference type="Rhea" id="RHEA-COMP:11602"/>
            <dbReference type="Rhea" id="RHEA-COMP:11603"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:29999"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:83421"/>
            <dbReference type="ChEBI" id="CHEBI:456216"/>
        </reaction>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>[HPr protein]-O-phospho-L-serine + H(+) + phosphate = [HPr protein]-L-serine + diphosphate</text>
            <dbReference type="Rhea" id="RHEA:46604"/>
            <dbReference type="Rhea" id="RHEA-COMP:11602"/>
            <dbReference type="Rhea" id="RHEA-COMP:11603"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:29999"/>
            <dbReference type="ChEBI" id="CHEBI:33019"/>
            <dbReference type="ChEBI" id="CHEBI:43474"/>
            <dbReference type="ChEBI" id="CHEBI:83421"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </cofactor>
    </comment>
    <comment type="subunit">
        <text evidence="1">Homohexamer.</text>
    </comment>
    <comment type="domain">
        <text evidence="1">The Walker A ATP-binding motif also binds Pi and PPi.</text>
    </comment>
    <comment type="miscellaneous">
        <text evidence="1">Both phosphorylation and phosphorolysis are carried out by the same active site and suggest a common mechanism for both reactions.</text>
    </comment>
    <comment type="similarity">
        <text evidence="1">Belongs to the HPrK/P family.</text>
    </comment>
    <dbReference type="EC" id="2.7.11.-" evidence="1"/>
    <dbReference type="EC" id="2.7.4.-" evidence="1"/>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX33648.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012202934.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A9BRT1"/>
    <dbReference type="SMR" id="A9BRT1"/>
    <dbReference type="STRING" id="398578.Daci_1002"/>
    <dbReference type="PRIDE" id="A9BRT1"/>
    <dbReference type="EnsemblBacteria" id="ABX33648">
        <property type="protein sequence ID" value="ABX33648"/>
        <property type="gene ID" value="Daci_1002"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_1002"/>
    <dbReference type="eggNOG" id="COG1493">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_052030_0_2_4"/>
    <dbReference type="OMA" id="AMNNRQK"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000287">
        <property type="term" value="F:magnesium ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000155">
        <property type="term" value="F:phosphorelay sensor kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004674">
        <property type="term" value="F:protein serine/threonine kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004712">
        <property type="term" value="F:protein serine/threonine/tyrosine kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006109">
        <property type="term" value="P:regulation of carbohydrate metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd01918">
        <property type="entry name" value="HprK_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.1390.20">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01249">
        <property type="entry name" value="HPr_kinase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003755">
        <property type="entry name" value="HPr(Ser)_kin/Pase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011104">
        <property type="entry name" value="Hpr_kin/Pase_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011126">
        <property type="entry name" value="Hpr_kin/Pase_Hpr_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR028979">
        <property type="entry name" value="Ser_kin/Pase_Hpr-like_N_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30305:SF1">
        <property type="entry name" value="PTHR30305:SF1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07475">
        <property type="entry name" value="Hpr_kinase_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02603">
        <property type="entry name" value="Hpr_kinase_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF75138">
        <property type="entry name" value="SSF75138"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00679">
        <property type="entry name" value="hpr-ser"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword id="KW-0067">ATP-binding</keyword>
    <keyword id="KW-0418">Kinase</keyword>
    <keyword id="KW-0460">Magnesium</keyword>
    <keyword id="KW-0479">Metal-binding</keyword>
    <keyword id="KW-0511">Multifunctional enzyme</keyword>
    <keyword id="KW-0547">Nucleotide-binding</keyword>
    <keyword id="KW-1185">Reference proteome</keyword>
    <keyword id="KW-0723">Serine/threonine-protein kinase</keyword>
    <keyword id="KW-0808">Transferase</keyword>
    <feature type="chain" id="PRO_1000139900" description="HPr kinase/phosphorylase">
        <location>
            <begin position="1"/>
            <end position="318"/>
        </location>
    </feature>
    <feature type="region of interest" description="Important for the catalytic mechanism of both phosphorylation and dephosphorylation" evidence="1">
        <location>
            <begin position="209"/>
            <end position="218"/>
        </location>
    </feature>
    <feature type="region of interest" description="Important for the catalytic mechanism of dephosphorylation" evidence="1">
        <location>
            <begin position="273"/>
            <end position="278"/>
        </location>
    </feature>
    <feature type="active site" evidence="1">
        <location>
            <position position="146"/>
        </location>
    </feature>
    <feature type="active site" evidence="1">
        <location>
            <position position="167"/>
        </location>
    </feature>
    <feature type="active site" description="Proton acceptor; for phosphorylation activity. Proton donor; for dephosphorylation activity" evidence="1">
        <location>
            <position position="185"/>
        </location>
    </feature>
    <feature type="active site" evidence="1">
        <location>
            <position position="252"/>
        </location>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <begin position="161"/>
            <end position="168"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <position position="168"/>
        </location>
        <ligand>
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <position position="210"/>
        </location>
        <ligand>
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000255" key="1">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01249"/>
        </source>
    </evidence>
    <sequence length="318" mass="35739" checksum="79188878D8C18C4A" modified="2008-01-15" version="1">MRPSAISADVLFEEFRSSLRWEWVAGLGASERRFDEMAVRSARSGADLVGYLNYIHPYRLQVLGEREIAYLSNATPQDCQRRVARIVTLEPPVLVLADGQTAPEALLSMCERAHIPMFSTREQSAFVIDVLRAYLAKHFADRTTMHGVFMDILGMGVLITGESGLGKSELGLELVTRGNGLVADDAVDLYRINQTTIEGKCPELLQNLLEVRGIGLLDIRAIFGETAVRRKMRLKLIVHLVRKETMEREYERLPAEPLTQDVLGVPVRKVVIQVVAGRNIAVLVEAAVRNAILQLRGIDTYQEFVQRHRRAMERGDTF</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="91" xmlns="http://uniprot.org/uniprot">
    <accession>A9BS09</accession>
    <name>A9BS09_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="4 8 10">Uracil-DNA glycosylase</fullName>
            <shortName evidence="8">UDG</shortName>
            <ecNumber evidence="4 8 10">3.2.2.27</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="8" type="primary">ung</name>
        <name evidence="12" type="ordered locus">Daci_0773</name>
    </gene>
    <organism evidence="12 13">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="12 13" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="13">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="13" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="13">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="2 8 10">Excises uracil residues from the DNA which can arise as a result of misincorporation of dUMP residues by DNA polymerase or due to deamination of cytosine.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1 8 10">
            <text>Hydrolyzes single-stranded DNA or mismatched double-stranded DNA and polynucleotides, releasing free uracil.</text>
            <dbReference type="EC" id="3.2.2.27"/>
        </reaction>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="8">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="3 8 10">Belongs to the uracil-DNA glycosylase (UDG) superfamily. UNG family.</text>
    </comment>
    <dbReference type="EC" id="3.2.2.27" evidence="4 8 10"/>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX33419.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_0773"/>
    <dbReference type="PRIDE" id="A9BS09"/>
    <dbReference type="EnsemblBacteria" id="ABX33419">
        <property type="protein sequence ID" value="ABX33419"/>
        <property type="gene ID" value="Daci_0773"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_0773"/>
    <dbReference type="eggNOG" id="COG0692">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_032162_3_0_4"/>
    <dbReference type="OMA" id="PDNGYLM"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004844">
        <property type="term" value="F:uracil DNA N-glycosylase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006284">
        <property type="term" value="P:base-excision repair"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd10027">
        <property type="entry name" value="UDG-F1-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.470.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00148">
        <property type="entry name" value="UDG"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002043">
        <property type="entry name" value="UDG_fam1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018085">
        <property type="entry name" value="Ura-DNA_Glyclase_AS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005122">
        <property type="entry name" value="Uracil-DNA_glycosylase-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036895">
        <property type="entry name" value="Uracil-DNA_glycosylase-like_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11264">
        <property type="entry name" value="PTHR11264"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03167">
        <property type="entry name" value="UDG"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00986">
        <property type="entry name" value="UDG"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52141">
        <property type="entry name" value="SSF52141"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00628">
        <property type="entry name" value="ung"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00130">
        <property type="entry name" value="U_DNA_GLYCOSYLASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="8" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="5 8 10" id="KW-0227">DNA damage</keyword>
    <keyword evidence="7 8 10" id="KW-0234">DNA repair</keyword>
    <keyword evidence="6 8 10" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="13" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="UDG" evidence="11">
        <location>
            <begin position="101"/>
            <end position="269"/>
        </location>
    </feature>
    <feature type="active site" description="Proton acceptor" evidence="8 9">
        <location>
            <position position="116"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001400"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00002631"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00008184"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00012030"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022763"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023204"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00148"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU10072"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="RuleBase" id="RU003780"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="11">
        <source>
            <dbReference type="SMART" id="SM00986"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="EMBL" id="ABX33419.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="13">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="274" mass="29665" checksum="0AFC16CAEC050886" modified="2008-01-15" version="1">MHRPRAGAFPFLSYLRGTTIARHACAGAPSAMALQDDAIAPAQADQLQSADPADWPVAPDWQPLVEDFFAGATGQQLLTFLHQRLEAGAVIFPPQPLRALELTPPEEVRVVILGQDPYHGRGQAEGLSFSVAPGVRMPPSLQNIFKEMQRDLGVPFPPFPNPGGSLVKWARNGVLLLNTCLTVEEGQAASHSGKGWELLTDAVIRHIAQGARPVVFMLWGSHAQSKRAFIPADRGHLVLTSNHPSPLSALRPPVPFIGNGHFGKARDFRAQHGY</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="82" xmlns="http://uniprot.org/uniprot">
    <accession>A9BS53</accession>
    <name>A9BS53_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="2 4">Single-stranded DNA-binding protein</fullName>
            <shortName evidence="2">SSB</shortName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="6" type="ordered locus">Daci_0817</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="7" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="2">Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism.</text>
    </comment>
    <comment type="subunit">
        <text evidence="2">Homotetramer.</text>
    </comment>
    <comment type="caution">
        <text evidence="2">Lacks conserved residue(s) required for the propagation of feature annotation.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX33463.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012202749.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_0817"/>
    <dbReference type="PRIDE" id="A9BS53"/>
    <dbReference type="EnsemblBacteria" id="ABX33463">
        <property type="protein sequence ID" value="ABX33463"/>
        <property type="gene ID" value="Daci_0817"/>
    </dbReference>
    <dbReference type="GeneID" id="60685379"/>
    <dbReference type="KEGG" id="dac:Daci_0817"/>
    <dbReference type="eggNOG" id="COG0629">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_078758_0_1_4"/>
    <dbReference type="OMA" id="GQMQERT"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003697">
        <property type="term" value="F:single-stranded DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006310">
        <property type="term" value="P:DNA recombination"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006281">
        <property type="term" value="P:DNA repair"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006260">
        <property type="term" value="P:DNA replication"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd04496">
        <property type="entry name" value="SSB_OBF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.50.140">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00984">
        <property type="entry name" value="SSB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012340">
        <property type="entry name" value="NA-bd_OB-fold"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000424">
        <property type="entry name" value="Primosome_PriB/ssb"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011344">
        <property type="entry name" value="ssDNA-bd"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10302">
        <property type="entry name" value="PTHR10302"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00436">
        <property type="entry name" value="SSB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50249">
        <property type="entry name" value="SSF50249"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00621">
        <property type="entry name" value="ssb"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50935">
        <property type="entry name" value="SSB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2" id="KW-0227">DNA damage</keyword>
    <keyword evidence="2" id="KW-0233">DNA recombination</keyword>
    <keyword evidence="2" id="KW-0234">DNA repair</keyword>
    <keyword evidence="2" id="KW-0235">DNA replication</keyword>
    <keyword evidence="1 2 3" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="5">
        <location>
            <begin position="108"/>
            <end position="188"/>
        </location>
    </feature>
    <feature type="short sequence motif" description="Important for interaction with partner proteins" evidence="2">
        <location>
            <begin position="183"/>
            <end position="188"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Pro residues" evidence="5">
        <location>
            <begin position="142"/>
            <end position="172"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00984"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00252"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="RuleBase" id="RU000524"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="ABX33463.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="188" mass="20390" checksum="96905968EEC8B1F8" modified="2008-01-15" version="1">MASVNKVIIVGNLGRDPEMRTFPSGDQVANVTIATTDRWRDKNTGENKEATEWHRVVFNGRLAEIVGQYLRKGSQVYVEGSLRTRKWTDQASGQERYATEIRADSMQMLGSRQGGGGGQQGGGYGDEGYGDSGYDAPPQQQQRRPAPAPMAAPAPRQAPAQRPAPAPMAPPPQRAASGFDDMDDDIPF</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="56" xmlns="http://uniprot.org/uniprot">
    <accession>A9BS58</accession>
    <name>A9BS58_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Daci_0822</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="4" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Periplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the UPF0065 (bug) family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX33468.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_0822"/>
    <dbReference type="PRIDE" id="A9BS58"/>
    <dbReference type="EnsemblBacteria" id="ABX33468">
        <property type="protein sequence ID" value="ABX33468"/>
        <property type="gene ID" value="Daci_0822"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_0822"/>
    <dbReference type="eggNOG" id="COG3181">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_045683_0_0_4"/>
    <dbReference type="OMA" id="YKGASAM"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0042597">
        <property type="term" value="C:periplasmic space"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.190.150">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005064">
        <property type="entry name" value="BUG"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR042100">
        <property type="entry name" value="Bug_dom1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR42928">
        <property type="entry name" value="PTHR42928"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03401">
        <property type="entry name" value="TctC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004418"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00006987"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ABX33468.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="375" mass="39257" checksum="68068B2E6D14C585" modified="2008-01-15" version="1">MRPPGANPHRAVEQAGFGAAMAPPRAESAPNAWVVLRTINLIHFRNNPMPSNSLLRRTALACGLLIAATGSAFADDAASYPNRAITMIVGYPAGGSTDLVGRFVADGLASRLGQPVVVENLGGAGGAIGAQKAVKATPDGYTLFVGANNELAIARLINKSIKYSIGDFTPIGMIGSQPMVLVASQKAGVKTAAEFSALVAKNPGKFSYGSSGVGTALHLAGEMIKEQGKLHMTHIPYRGVAPLTTDLVGNNIEFGMFVLSSGLPQIRAGKVIALGTTEAKRSAITPDIPALSELPQYKNVDINVWFALMAPKGLPAPVAAKVKKALDETMASPEFRKKMEEAGSVVADPKTDAGKYINAEIAKYTKIVQFAHIEN</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="43" xmlns="http://uniprot.org/uniprot">
    <accession>A9BS72</accession>
    <name>A9BS72_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_0836</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX33482.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012202768.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_0836"/>
    <dbReference type="PRIDE" id="A9BS72"/>
    <dbReference type="EnsemblBacteria" id="ABX33482">
        <property type="protein sequence ID" value="ABX33482"/>
        <property type="gene ID" value="Daci_0836"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_0836"/>
    <dbReference type="eggNOG" id="COG3170">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_353614_0_0_4"/>
    <dbReference type="OMA" id="GTWFEFV"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012434">
        <property type="entry name" value="DUF1631"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07793">
        <property type="entry name" value="DUF1631"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="224"/>
            <end position="273"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="238"/>
            <end position="252"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX33482.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="801" mass="87327" checksum="D8A634B3F87A1EBB" modified="2008-01-15" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="90" xmlns="http://uniprot.org/uniprot">
    <accession>A9BS82</accession>
    <name>A9BS82_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Two component transcriptional regulator, LuxR family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ordered locus">Daci_0846</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="6" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX33492.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012202778.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_0846"/>
    <dbReference type="PRIDE" id="A9BS82"/>
    <dbReference type="EnsemblBacteria" id="ABX33492">
        <property type="protein sequence ID" value="ABX33492"/>
        <property type="gene ID" value="Daci_0846"/>
    </dbReference>
    <dbReference type="GeneID" id="60685408"/>
    <dbReference type="KEGG" id="dac:Daci_0846"/>
    <dbReference type="eggNOG" id="COG4566">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_000445_90_4_4"/>
    <dbReference type="OMA" id="DACEGGR"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000160">
        <property type="term" value="P:phosphorelay signal transduction system"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006355">
        <property type="term" value="P:regulation of transcription, DNA-templated"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd06170">
        <property type="entry name" value="LuxR_C_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011006">
        <property type="entry name" value="CheY-like_superfamily"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016032">
        <property type="entry name" value="Sig_transdc_resp-reg_C-effctor"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001789">
        <property type="entry name" value="Sig_transdc_resp-reg_receiver"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000792">
        <property type="entry name" value="Tscrpt_reg_LuxR_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00196">
        <property type="entry name" value="GerE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00072">
        <property type="entry name" value="Response_reg"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00038">
        <property type="entry name" value="HTHLUXR"/>
    </dbReference>
    <dbReference type="SMART" id="SM00421">
        <property type="entry name" value="HTH_LUXR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00448">
        <property type="entry name" value="REC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46894">
        <property type="entry name" value="SSF46894"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52172">
        <property type="entry name" value="SSF52172"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00622">
        <property type="entry name" value="HTH_LUXR_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50043">
        <property type="entry name" value="HTH_LUXR_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50110">
        <property type="entry name" value="RESPONSE_REGULATORY"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="2" id="KW-0597">Phosphoprotein</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Response regulatory" evidence="4">
        <location>
            <begin position="8"/>
            <end position="128"/>
        </location>
    </feature>
    <feature type="domain" description="HTH luxR-type" evidence="3">
        <location>
            <begin position="144"/>
            <end position="209"/>
        </location>
    </feature>
    <feature type="modified residue" description="4-aspartylphosphate" evidence="2">
        <location>
            <position position="61"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00169"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="PROSITE" id="PS50043"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="PROSITE" id="PS50110"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="ABX33492.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="209" mass="23565" checksum="FDB71887ECBA70C8" modified="2008-01-15" version="1">MEPVPDATVYIVDDDTDVREALAWLLRSRRLLSECYDSAEAFDAMLQSRPPPRNPCCLLLDMRMGGMSGLALFNLMLERNQIAGMPVIFLTGHADVPTAVDTVKRGAFDFCEKPFSDNALVDRIEQALELSAQHQAETRAREAVRARFNELTERERDVMRLVVEGIPNKLIADQLDISVRTVEVHRARVFDKMQVKSAVELANLLRTHG</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="33" xmlns="http://uniprot.org/uniprot">
    <accession>A9BSC1</accession>
    <name>A9BSC1_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_1090</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX33735.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_1090"/>
    <dbReference type="PRIDE" id="A9BSC1"/>
    <dbReference type="EnsemblBacteria" id="ABX33735">
        <property type="protein sequence ID" value="ABX33735"/>
        <property type="gene ID" value="Daci_1090"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_1090"/>
    <dbReference type="HOGENOM" id="CLU_1913631_0_0_4"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="53"/>
            <end position="87"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX33735.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="138" mass="14826" checksum="F8D38E41F1BD4A35" modified="2008-01-15" version="1">MPSSMTRPRLAALAVLVIALLFQWSWMAAAALCRHDGHETRHFGHHVHGVSLHGMGAERHANADPGAGAEPGQPAKKSDQGQPSSLSVDCSMCHAWVAVATHYAKAAPVAPPPMPFAEPLRRHASAVLLRPDRPRWQG</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="31" xmlns="http://uniprot.org/uniprot">
    <accession>A9BSY2</accession>
    <name>A9BSY2_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_1699</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX34342.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_1699"/>
    <dbReference type="PRIDE" id="A9BSY2"/>
    <dbReference type="EnsemblBacteria" id="ABX34342">
        <property type="protein sequence ID" value="ABX34342"/>
        <property type="gene ID" value="Daci_1699"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_1699"/>
    <dbReference type="HOGENOM" id="CLU_1228274_0_0_4"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="111"/>
            <end position="136"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="148"/>
            <end position="169"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX34342.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="190" mass="21409" checksum="7ED023D35EE18A2F" modified="2008-01-15" version="1">MSFHAASVAFYVPSAKLSSKQWIRRPLACWRLKKLQHDLKVAPTPLLLAKADDLLSSIEFNSRRLVPSQRHRIRQACVRKSMAPRTMHLAFTAAGIFQTANKVHMYSLPNWLHVCAGALRNVVGALIPILLLGTAWSIVANGQLVRETFVLGFLTIYTGWMTWALNVIGPQWQHAQNIRMQLGLQQICNT</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="57" xmlns="http://uniprot.org/uniprot">
    <accession>A9BSZ7</accession>
    <name>A9BSZ7_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Outer membrane efflux protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Daci_1714</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="4" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the outer membrane factor (OMF) (TC 1.B.17) family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX34357.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_1714"/>
    <dbReference type="PRIDE" id="A9BSZ7"/>
    <dbReference type="EnsemblBacteria" id="ABX34357">
        <property type="protein sequence ID" value="ABX34357"/>
        <property type="gene ID" value="Daci_1714"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_1714"/>
    <dbReference type="eggNOG" id="COG1538">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_012817_14_3_4"/>
    <dbReference type="OMA" id="QVERIYG"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015562">
        <property type="term" value="F:efflux transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003423">
        <property type="entry name" value="OMP_efflux"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02321">
        <property type="entry name" value="OEP"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="95"/>
            <end position="118"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00007613"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ABX34357.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="443" mass="47751" checksum="C986E84A4CE23C7B" modified="2008-01-15" version="1">MDSVRAGVSYMILVTTRGKERLRTSFCQTLLVSMLVGAGLVHAAPTSSSSLTTASSEAPAAPLTLSVAVAQALATHPSLRAAQFGLEASDGAVLQSKSRPNPELSYAQEDTRSRTKTSTVQWNQLVEVGGKRDARMRIAERGRDVAQAGVAATRANIRADVRATFYSLLAAQERVTVAKQTVEIVRSAREAAAKRVAAGKVAPLEESRAKVAESGAELEQGKAESDLRVARQQMQALLGGQDFSFGPALGTFEIAPEAPAASELLAQLEDSPSIRQARSTLEQSRASADLERAKRLPDPTLSLGVKRAQEVGRNQLVFGISIPLPVLDTNRGNQIQALRLADQAEEKLQALRVQMQTDVFQAREQLETSRRLAQQLSTQVLPTAQTAYEAAVKGFSLGKFSYLDVLDAQRTWFDARSQYLSQLLSTHSAVADLERLLGSQADQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-05-25" version="45" xmlns="http://uniprot.org/uniprot">
    <accession>A9BT26</accession>
    <name>A9BT26_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_1743</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX34386.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012203671.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_1743"/>
    <dbReference type="EnsemblBacteria" id="ABX34386">
        <property type="protein sequence ID" value="ABX34386"/>
        <property type="gene ID" value="Daci_1743"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_1743"/>
    <dbReference type="eggNOG" id="ENOG5032TKC">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_125436_1_0_4"/>
    <dbReference type="OMA" id="HGNDKAQ"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="1">
        <location>
            <begin position="1"/>
            <end position="23"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5002735068" evidence="1">
        <location>
            <begin position="24"/>
            <end position="124"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX34386.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="124" mass="12819" checksum="4CFBD67ACE3F9EB5" modified="2008-01-15" version="1">MMNRKTALAVMLGLSALAFNASAHGPSKAQYGGVVQTASDLSFELANEGDKAALYIVDHDAPADASKMSGKLAILNGTEKSEVELKPVGGNKLEATTKLVSGARVVATVTTAEGKVITVRFKAK</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-01-19" version="43" xmlns="http://uniprot.org/uniprot">
    <accession>A9BT30</accession>
    <name>A9BT30_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_1747</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX34390.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012203675.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="ABX34390">
        <property type="protein sequence ID" value="ABX34390"/>
        <property type="gene ID" value="Daci_1747"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_1747"/>
    <dbReference type="eggNOG" id="ENOG5033C7G">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_1616652_0_0_4"/>
    <dbReference type="OMA" id="FWPQFGV"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="117"/>
            <end position="143"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX34390.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="166" mass="18372" checksum="2B05A88D81E2B869" modified="2008-01-15" version="1">MTKYAGAQDTYRELVEESNESWLLGLVAFAVVEEQRVEWMRHYEKSHGALPTADQVHGWYEQQPPGALLRAKGTAENALLAYSEQVSAELDAEYRKEIENGIVVGEIKELKQFWPQFGVNVAGGLTSALLFAAILTVVAFLVFNDTSPVEMVKKSNQSSVGVEHGN</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="68" xmlns="http://uniprot.org/uniprot">
    <accession>A9BT37</accession>
    <name>A9BT37_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Transcriptional regulator, XRE family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ordered locus">Daci_1755</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="5" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX34397.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012203682.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_1755"/>
    <dbReference type="PRIDE" id="A9BT37"/>
    <dbReference type="EnsemblBacteria" id="ABX34397">
        <property type="protein sequence ID" value="ABX34397"/>
        <property type="gene ID" value="Daci_1755"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_1755"/>
    <dbReference type="eggNOG" id="COG0699">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="eggNOG" id="COG1396">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_388761_0_0_4"/>
    <dbReference type="OMA" id="AIRNMAG"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd00093">
        <property type="entry name" value="HTH_XRE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.260.40">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001387">
        <property type="entry name" value="Cro/C1-type_HTH"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010982">
        <property type="entry name" value="Lambda_DNA-bd_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="SMART" id="SM00530">
        <property type="entry name" value="HTH_XRE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47413">
        <property type="entry name" value="SSF47413"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50943">
        <property type="entry name" value="HTH_CROC1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HTH cro/C1-type" evidence="3">
        <location>
            <begin position="11"/>
            <end position="64"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="216"/>
            <end position="235"/>
        </location>
    </feature>
    <feature type="coiled-coil region" evidence="1">
        <location>
            <begin position="490"/>
            <end position="529"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="PROSITE" id="PS50943"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="ABX34397.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="711" mass="79410" checksum="44925FF60C17D7EC" modified="2008-01-15" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="78" xmlns="http://uniprot.org/uniprot">
    <accession>A9BT57</accession>
    <name>A9BT57_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Transcriptional regulator, LysR family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Daci_1982</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="4" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the LysR transcriptional regulatory family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX34622.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012203907.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_1982"/>
    <dbReference type="PRIDE" id="A9BT57"/>
    <dbReference type="EnsemblBacteria" id="ABX34622">
        <property type="protein sequence ID" value="ABX34622"/>
        <property type="gene ID" value="Daci_1982"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_1982"/>
    <dbReference type="eggNOG" id="COG0583">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_039613_6_0_4"/>
    <dbReference type="OMA" id="PFLIHMA"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003700">
        <property type="term" value="F:DNA-binding transcription factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005119">
        <property type="entry name" value="LysR_subst-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000847">
        <property type="entry name" value="Tscrpt_reg_HTH_LysR"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036390">
        <property type="entry name" value="WH_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00126">
        <property type="entry name" value="HTH_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03466">
        <property type="entry name" value="LysR_substrate"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00039">
        <property type="entry name" value="HTHLYSR"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46785">
        <property type="entry name" value="SSF46785"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50931">
        <property type="entry name" value="HTH_LYSR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HTH lysR-type" evidence="2">
        <location>
            <begin position="1"/>
            <end position="58"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00009437"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS50931"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ABX34622.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="303" mass="33550" checksum="C92E2B2943694B79" modified="2008-01-15" version="1">MDTQKLRHLLAIVEHGTFSDAARAVHLTQPALSRSIRALEDELRAQLFDRGARRARLTVFGELVAERARRMRLEETQLRRDLELLRGGQEGALAIGVAPAPAALLLKPFLIHMAQAHPRIKVRTEMGATSALLELLRNESIDAIVGDAYVLRAADDVDMELLGELPAGLVCRAGHPVLQNPGMDEIRRYPLATTTLSTAMARQLAELWGEGAEPDKLFTLHCNNLELLRSVTLATDTLLFGVLSITRQERASGTMAEVPLPADPRRCGRYGMARMGARSLSPALETVYAFTRTHWRELSEHDQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="65" xmlns="http://uniprot.org/uniprot">
    <accession>A9BT87</accession>
    <name>A9BT87_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Taurine dioxygenase</fullName>
            <ecNumber evidence="3">1.14.11.17</ecNumber>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Daci_2012</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="4" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EC" id="1.14.11.17" evidence="3"/>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX34652.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012203937.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_2012"/>
    <dbReference type="PRIDE" id="A9BT87"/>
    <dbReference type="EnsemblBacteria" id="ABX34652">
        <property type="protein sequence ID" value="ABX34652"/>
        <property type="gene ID" value="Daci_2012"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_2012"/>
    <dbReference type="eggNOG" id="COG2175">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_036005_2_1_4"/>
    <dbReference type="OMA" id="RHFGKPN"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000908">
        <property type="term" value="F:taurine dioxygenase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.60.130.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR042098">
        <property type="entry name" value="TauD-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003819">
        <property type="entry name" value="TauD/TfdA-like"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02668">
        <property type="entry name" value="TauD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-0223">Dioxygenase</keyword>
    <keyword evidence="1 3" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="TauD" evidence="2">
        <location>
            <begin position="2"/>
            <end position="273"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023002"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF02668"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ABX34652.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="281" mass="31247" checksum="137B6BFF403D1385" modified="2008-01-15" version="1">MQIRQITPAIGAEISGVHLGDAARDAALFADIRAALLTHRVLFFRDQDITRAEHVAFASRFGPLEDHPVAGSDPEHPGLVRIYRSDDPHSYENTWHCDGLWRPNPAMGAVLRCIECPPIGGDTIWVNMVKAYEELPESIKRSIGGLRAKAGIEHTFGAVMAPEARARLASEHPPVEHPVVRTHPETGEKLLFVGAGFSTHFVNYSTPENVRHGIDKAPGAALLMNYLISRATIPEYQVRWSWKPGDVAVWDNRSTQHYALNDYYPAPRRMERAGIVGDIPR</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="81" xmlns="http://uniprot.org/uniprot">
    <accession>A9BTC7</accession>
    <name>A9BTC7_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="2 3">ATP-dependent Clp protease proteolytic subunit</fullName>
            <ecNumber evidence="2">3.4.21.92</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="2">Endopeptidase Clp</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="2" type="primary">clpP</name>
        <name evidence="4" type="ordered locus">Daci_2052</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="5" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="2">Cleaves peptides in various proteins in a process that requires ATP hydrolysis. Has a chymotrypsin-like activity. Plays a major role in the degradation of misfolded proteins.</text>
    </comment>
    <comment type="subunit">
        <text evidence="2">Fourteen ClpP subunits assemble into 2 heptameric rings which stack back to back to give a disk-like structure with a central cavity, resembling the structure of eukaryotic proteasomes.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="2">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="1 2 3">Belongs to the peptidase S14 family.</text>
    </comment>
    <dbReference type="EC" id="3.4.21.92" evidence="2"/>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX34692.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012203975.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="SMR" id="A9BTC7"/>
    <dbReference type="STRING" id="398578.Daci_2052"/>
    <dbReference type="MEROPS" id="S14.001"/>
    <dbReference type="PRIDE" id="A9BTC7"/>
    <dbReference type="EnsemblBacteria" id="ABX34692">
        <property type="protein sequence ID" value="ABX34692"/>
        <property type="gene ID" value="Daci_2052"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_2052"/>
    <dbReference type="eggNOG" id="COG0740">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_058707_3_2_4"/>
    <dbReference type="OMA" id="GFKRQDP"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004176">
        <property type="term" value="F:ATP-dependent peptidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004252">
        <property type="term" value="F:serine-type endopeptidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006508">
        <property type="term" value="P:proteolysis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd07017">
        <property type="entry name" value="S14_ClpP_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00444">
        <property type="entry name" value="ClpP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001907">
        <property type="entry name" value="ClpP"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029045">
        <property type="entry name" value="ClpP/crotonase-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023562">
        <property type="entry name" value="ClpP/TepA"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10381">
        <property type="entry name" value="PTHR10381"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00574">
        <property type="entry name" value="CLP_protease"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00127">
        <property type="entry name" value="CLPPROTEASEP"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52096">
        <property type="entry name" value="SSF52096"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="2 4" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="2" id="KW-0645">Protease</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0720">Serine protease</keyword>
    <feature type="active site" description="Nucleophile" evidence="2">
        <location>
            <position position="102"/>
        </location>
    </feature>
    <feature type="active site" evidence="2">
        <location>
            <position position="127"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00007039"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00444"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="RuleBase" id="RU003567"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="ABX34692.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="201" mass="22647" checksum="7990E8D79C326E9F" modified="2008-01-15" version="1">MRESMMLVPMVVEQSARGERSFDIYSRLLRDRVIFLNGEVNDAVSALVCAQLLFLEAENPDKPIHLYINSPGGVITSGLAMYDTMQFIKSPVHTLCMGTARSMGSFLLMAGEPGHRMALPNASLHVHQPLGGVQGQASDIRIHAEEMLRTKDRVTRLYAQHCGRSYEEVERDLDRDRFMTAEEAREWGLIDKVLDRRTATP</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="59" xmlns="http://uniprot.org/uniprot">
    <accession>A9BTJ7</accession>
    <name>A9BTJ7_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Putative serine protein kinase, PrkA</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_2327</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX34965.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012204247.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_2327"/>
    <dbReference type="PRIDE" id="A9BTJ7"/>
    <dbReference type="EnsemblBacteria" id="ABX34965">
        <property type="protein sequence ID" value="ABX34965"/>
        <property type="gene ID" value="Daci_2327"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_2327"/>
    <dbReference type="eggNOG" id="COG2766">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_028588_1_0_4"/>
    <dbReference type="OMA" id="DFYGMED"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004672">
        <property type="term" value="F:protein kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016310">
        <property type="term" value="P:phosphorylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013153">
        <property type="entry name" value="Prk_AAA_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010650">
        <property type="entry name" value="PrkA_C_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016230">
        <property type="entry name" value="Ser_kinase_PrkA"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08298">
        <property type="entry name" value="AAA_PrkA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF06798">
        <property type="entry name" value="PrkA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF000549">
        <property type="entry name" value="Ser_prot_kin"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00763">
        <property type="entry name" value="AAA_PrkA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0418">Kinase</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="AAA_PrkA" evidence="1">
        <location>
            <begin position="19"/>
            <end position="376"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="SMART" id="SM00763"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX34965.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="640" mass="73263" checksum="884AD3C4D61D4E01" modified="2008-01-15" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="32" xmlns="http://uniprot.org/uniprot">
    <accession>A9BTM0</accession>
    <name>A9BTM0_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Daci_2350</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="2" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX34988.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="PRIDE" id="A9BTM0"/>
    <dbReference type="EnsemblBacteria" id="ABX34988">
        <property type="protein sequence ID" value="ABX34988"/>
        <property type="gene ID" value="Daci_2350"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_2350"/>
    <dbReference type="HOGENOM" id="CLU_1882342_0_0_4"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ABX34988.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="135" mass="15166" checksum="A89EC44967F24A2F" modified="2008-01-15" version="1">MAEDDLGVHLDEIQFMIWNDFLVDGVHEAAELLGYLASSLDLSPGDVCAIDSVEQLVEQKAKIVLLIEDSHEFQGMKMVTVYLEEDVVVENSIFAFMARNFKIDIYLPDEDSGYYRDLVLLDKTGGMKKVTLQGS</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="60" xmlns="http://uniprot.org/uniprot">
    <accession>A9BTS4</accession>
    <name>A9BTS4_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">CopG domain protein DNA-binding domain protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_2700</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX35338.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012204565.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_2700"/>
    <dbReference type="PRIDE" id="A9BTS4"/>
    <dbReference type="EnsemblBacteria" id="ABX35338">
        <property type="protein sequence ID" value="ABX35338"/>
        <property type="gene ID" value="Daci_2700"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_2700"/>
    <dbReference type="eggNOG" id="COG4962">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_117977_0_0_4"/>
    <dbReference type="OMA" id="FIQHEHA"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006355">
        <property type="term" value="P:regulation of transcription, DNA-templated"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.1220.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013321">
        <property type="entry name" value="Arc_rbn_hlx_hlx"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010985">
        <property type="entry name" value="Ribbon_hlx_hlx"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47598">
        <property type="entry name" value="SSF47598"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="2" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="coiled-coil region" evidence="1">
        <location>
            <begin position="50"/>
            <end position="77"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX35338.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="154" mass="17343" checksum="91D387DEAC83FBC4" modified="2008-01-15" version="1">MSHYRLNLFIQPEHAKRLDELAAKKGVSKSSIVAAALASWLSPDAADQREAAIAKRLDRLSRQAERMERDQNIAIETLALFIRYYLTVSTPVPEAHQDAARAQGKARFEQFVEQLGRHLLRGRSLVRDVVEELHPDPMRMDDAAAVAEAQERAS</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="75" xmlns="http://uniprot.org/uniprot">
    <accession>A9BTZ2</accession>
    <name>A9BTZ2_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Enoyl-CoA hydratase/isomerase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ordered locus">Daci_2768</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="5" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1 2">Belongs to the enoyl-CoA hydratase/isomerase family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX35406.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012204616.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_2768"/>
    <dbReference type="PRIDE" id="A9BTZ2"/>
    <dbReference type="EnsemblBacteria" id="ABX35406">
        <property type="protein sequence ID" value="ABX35406"/>
        <property type="gene ID" value="Daci_2768"/>
    </dbReference>
    <dbReference type="GeneID" id="60687033"/>
    <dbReference type="KEGG" id="dac:Daci_2768"/>
    <dbReference type="eggNOG" id="COG1024">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_009834_7_3_4"/>
    <dbReference type="OMA" id="EMFMPAA"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016853">
        <property type="term" value="F:isomerase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.12.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029045">
        <property type="entry name" value="ClpP/crotonase-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018376">
        <property type="entry name" value="Enoyl-CoA_hyd/isom_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001753">
        <property type="entry name" value="Enoyl-CoA_hydra/iso"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014748">
        <property type="entry name" value="Enoyl-CoA_hydra_C"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00378">
        <property type="entry name" value="ECH_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52096">
        <property type="entry name" value="SSF52096"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00166">
        <property type="entry name" value="ENOYL_COA_HYDRATASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-0413">Isomerase</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="3">
        <location>
            <begin position="230"/>
            <end position="249"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00005254"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="RuleBase" id="RU003707"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="ABX35406.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="249" mass="27183" checksum="06EEB8DFA270E94D" modified="2008-01-15" version="1">MTPRLDIQDHLATITLQRPEAANKLAPEDLGALVAHMEHINHRDDVRVVVLRSEGKYFCSGYDISEIQGSQTEGSSFGEMVDAIEQCRAVTVAAIHGGVYGGATDMALACDFRVGSTAAEMFMPAARLGLHFYAGGLERYVSRLGLDTAKRLFLTCERIQAPEMKACGFLTHLADPAAFAAAVEQLTGTLAAMAPIPLFGMKKHLNLIARGRHDVAEITREVQRSIASEDLQEGGRAWREKRSPEFKGR</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="60" xmlns="http://uniprot.org/uniprot">
    <accession>A9BUE2</accession>
    <name>A9BUE2_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Diguanylate cyclase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ordered locus">Daci_1200</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="5" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX33845.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012203131.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_1200"/>
    <dbReference type="PRIDE" id="A9BUE2"/>
    <dbReference type="EnsemblBacteria" id="ABX33845">
        <property type="protein sequence ID" value="ABX33845"/>
        <property type="gene ID" value="Daci_1200"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_1200"/>
    <dbReference type="eggNOG" id="COG2199">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_000445_11_1_4"/>
    <dbReference type="OMA" id="VIHFANE"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd01949">
        <property type="entry name" value="GGDEF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.70.270">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000160">
        <property type="entry name" value="GGDEF_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029787">
        <property type="entry name" value="Nucleotide_cyclase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043128">
        <property type="entry name" value="Rev_trsase/Diguanyl_cyclase"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00990">
        <property type="entry name" value="GGDEF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00267">
        <property type="entry name" value="GGDEF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55073">
        <property type="entry name" value="SSF55073"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00254">
        <property type="entry name" value="GGDEF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50887">
        <property type="entry name" value="GGDEF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0472">Membrane</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="2" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="12"/>
            <end position="31"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="43"/>
            <end position="61"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="130"/>
            <end position="148"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="160"/>
            <end position="178"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="198"/>
            <end position="218"/>
        </location>
    </feature>
    <feature type="domain" description="GGDEF" evidence="3">
        <location>
            <begin position="260"/>
            <end position="392"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="395"/>
            <end position="422"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="PROSITE" id="PS50887"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="ABX33845.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="422" mass="46022" checksum="D6AA30A6D681E144" modified="2008-01-15" version="1">MPSTLPTLDFFSMTAVVAINMMAMSAALPLAMGRRVSGAARHAQHFFLMQALAWILILIASRLPHGLMGRDLLSLGAAALAATAQWQMARALREWLGPRPMLLERGLIALCVLGPLGFALLLPQPALRTGWFSAVHGLCLMALAGLCLDPQRPVARSWRYLMCGVAAFMGLMLFVRSYLALATPFLPSFTADSGANQIFALLTTLSSTLLMVAVLVAWRDETSQQLRDLALQDMLTGLPNRRALLERAPAMLAHAQRHRQALALVMLDLDHFKHVNDEHGHAVGDQTLCLFARLLQQQLRSDEIAARWGGEEFCLLLYTTDDGVDTLCTRLQSALLQASRKVLGFEVRFSAGCAHAPQAWNGLCLELMLAPADAALYAAKRRGRDCWTQVRLSPVTASEEQGPQPSASIPEQAMAHGRTPGT</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="61" xmlns="http://uniprot.org/uniprot">
    <accession>A9BUH3</accession>
    <name>A9BUH3_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="9">YhhN family protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="9" type="ordered locus">Daci_1232</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="9 10" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="10" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the TMEM86 family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX33876.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012203162.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_1232"/>
    <dbReference type="PRIDE" id="A9BUH3"/>
    <dbReference type="EnsemblBacteria" id="ABX33876">
        <property type="protein sequence ID" value="ABX33876"/>
        <property type="gene ID" value="Daci_1232"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_1232"/>
    <dbReference type="eggNOG" id="COG3000">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="eggNOG" id="COG3714">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_033631_2_0_4"/>
    <dbReference type="OMA" id="FWVHTEQ"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005506">
        <property type="term" value="F:iron ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016491">
        <property type="term" value="F:oxidoreductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008610">
        <property type="term" value="P:lipid biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006694">
        <property type="entry name" value="Fatty_acid_hydroxylase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012506">
        <property type="entry name" value="YhhN"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04116">
        <property type="entry name" value="FA_hydroxylase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07947">
        <property type="entry name" value="YhhN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5 7" id="KW-0472">Membrane</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 7" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="4 7" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="7"/>
            <end position="25"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="45"/>
            <end position="66"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="78"/>
            <end position="100"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="140"/>
            <end position="166"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="306"/>
            <end position="326"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="361"/>
            <end position="380"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="386"/>
            <end position="406"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="418"/>
            <end position="438"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="444"/>
            <end position="463"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="475"/>
            <end position="493"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="499"/>
            <end position="518"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="530"/>
            <end position="552"/>
        </location>
    </feature>
    <feature type="domain" description="Fatty acid hydroxylase" evidence="8">
        <location>
            <begin position="86"/>
            <end position="219"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="6">
        <location>
            <begin position="588"/>
            <end position="626"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="6">
        <location>
            <begin position="588"/>
            <end position="618"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00007375"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="Pfam" id="PF04116"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="ABX33876.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="626" mass="69103" checksum="E8F1B3358BF78E4C" modified="2008-01-15" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="74" xmlns="http://uniprot.org/uniprot">
    <accession>A9BUZ5</accession>
    <name>A9BUZ5_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">Glutaredoxin</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="5" type="ordered locus">Daci_1815</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="6" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="3">Has a glutathione-disulfide oxidoreductase activity in the presence of NADPH and glutathione reductase. Reduces low molecular weight disulfides and proteins.</text>
    </comment>
    <comment type="similarity">
        <text evidence="3">Belongs to the glutaredoxin family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX34457.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012203742.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_1815"/>
    <dbReference type="PRIDE" id="A9BUZ5"/>
    <dbReference type="EnsemblBacteria" id="ABX34457">
        <property type="protein sequence ID" value="ABX34457"/>
        <property type="gene ID" value="Daci_1815"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_1815"/>
    <dbReference type="eggNOG" id="COG0695">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_026126_7_3_4"/>
    <dbReference type="OMA" id="LLWWKGV"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0097573">
        <property type="term" value="F:glutathione oxidoreductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004362">
        <property type="term" value="F:glutathione-disulfide reductase (NADPH) activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0045454">
        <property type="term" value="P:cell redox homeostasis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd03418">
        <property type="entry name" value="GRX_GRXb_1_3_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011767">
        <property type="entry name" value="GLR_AS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002109">
        <property type="entry name" value="Glutaredoxin"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014025">
        <property type="entry name" value="Glutaredoxin_subgr"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011900">
        <property type="entry name" value="GRX_bact"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036249">
        <property type="entry name" value="Thioredoxin-like_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00462">
        <property type="entry name" value="Glutaredoxin"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00160">
        <property type="entry name" value="GLUTAREDOXIN"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52833">
        <property type="entry name" value="SSF52833"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR02181">
        <property type="entry name" value="GRX_bact"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00195">
        <property type="entry name" value="GLUTAREDOXIN_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="1" id="KW-1015">Disulfide bond</keyword>
    <keyword evidence="3" id="KW-0249">Electron transport</keyword>
    <keyword evidence="2 3" id="KW-0676">Redox-active center</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0813">Transport</keyword>
    <feature type="domain" description="Glutaredoxin" evidence="4">
        <location>
            <begin position="4"/>
            <end position="64"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023157"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023284"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="RuleBase" id="RU364065"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="Pfam" id="PF00462"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="ABX34457.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="85" mass="9345" checksum="EB535B06C9D49AB2" modified="2008-01-15" version="1">MQAVKMYTTAVCPYCIRAKQILKSKGVEQIEEIRIDTDPAARDVMMQSTGRRTVPQIFIGDYHVGGCDDLMALDADGGLVPLLQS</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-01-19" version="52" xmlns="http://uniprot.org/uniprot">
    <accession>A9BV63</accession>
    <name>A9BV63_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Daci_2087</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="2" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX34727.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012204010.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_2087"/>
    <dbReference type="EnsemblBacteria" id="ABX34727">
        <property type="protein sequence ID" value="ABX34727"/>
        <property type="gene ID" value="Daci_2087"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_2087"/>
    <dbReference type="eggNOG" id="COG0687">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_053523_0_0_4"/>
    <dbReference type="OMA" id="YDQWFHS"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006059">
        <property type="entry name" value="SBP"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13416">
        <property type="entry name" value="SBP_bac_8"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ABX34727.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="396" mass="44261" checksum="81DC244D4A5CBE48" modified="2008-01-15" version="1">MRKNDPELRVLGTSVTLTEALRQRAQQDLGIRIHFEVLDGFDAQRQAVMRQDSFDLYDQWFHSVDFLWPTGTLQPIDTARLTCWDEVNALPRTGRITPQAAFGAGCNPVTRLYVQADGSVSDVPSAHISMLPLTHNVDSFVYLPAALPALFDQAEESWSWLVSPACRGRAALQADAAIGALDAALALQASGDMRFGDISNLGLEEIDRMMAVLLQRQESEQFRGFWGNYADAARLMIDAGVAIQSHWSPAMGHYRAAGLDYRLACPREGYRAWYGGLGISSQARGDTLDAAYRYLNWWQSGWPGAAMARQGYYISNPLRTREYLSASEWDYWYAGLPAAEDLQGTDGQLVVPRGSVRDGGSYEQRLGRIAVWNTVMDEHNYLVRQWATLLRRARAV</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="59" xmlns="http://uniprot.org/uniprot">
    <accession>A9BV68</accession>
    <name>A9BV68_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Polysaccharide deacetylase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_2092</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX34732.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012204015.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_2092"/>
    <dbReference type="PRIDE" id="A9BV68"/>
    <dbReference type="EnsemblBacteria" id="ABX34732">
        <property type="protein sequence ID" value="ABX34732"/>
        <property type="gene ID" value="Daci_2092"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_2092"/>
    <dbReference type="eggNOG" id="COG0726">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_029940_1_0_4"/>
    <dbReference type="OMA" id="HNDFTPY"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016810">
        <property type="term" value="F:hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005975">
        <property type="term" value="P:carbohydrate metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd10938">
        <property type="entry name" value="CE4_HpPgdA_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011330">
        <property type="entry name" value="Glyco_hydro/deAcase_b/a-brl"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002509">
        <property type="entry name" value="NODB_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037950">
        <property type="entry name" value="PgdA-like"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01522">
        <property type="entry name" value="Polysacc_deac_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF88713">
        <property type="entry name" value="SSF88713"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51677">
        <property type="entry name" value="NODB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="NodB homology" evidence="1">
        <location>
            <begin position="29"/>
            <end position="276"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS51677"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX34732.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="291" mass="33692" checksum="3F22BD3729DAA3E6" modified="2008-01-15" version="1">MSKEIQITFGVDVDAVGGWLGSYGGEDSPDDISRGMFAGEVGSLRLLKLFHKYGLKTTWFIPGHSAETFPEQMKAVVDAGHEIGIHGYSHENPIAMTPEQEEAVLDRSIEVITRLAGRAPTGYVAPWWEFSPVTNELLLKKGIKYDHSLMHNDFHPYYVRVGDQWTRIDYSKHPDTWMKPLVRGKETRLVEIPANWYLDDLPPMMFIKKSPNSHGFVNPRDIEQMWRDQFDWVYREHDYAVFPITIHPDVSGRPQVLLMLERLIEHFQSHEGVRFMTCDQIADDFLHRQPR</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="95" xmlns="http://uniprot.org/uniprot">
    <accession>A9BVN9</accession>
    <name>A9BVN9_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="7 10">3,4-dihydroxy-2-butanone 4-phosphate synthase</fullName>
            <shortName evidence="10">DHBP synthase</shortName>
            <ecNumber evidence="6 10">4.1.99.12</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="10" type="primary">ribB</name>
        <name evidence="13" type="ordered locus">Daci_2468</name>
    </gene>
    <organism evidence="13 14">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="13 14" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="14">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="14" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="14">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="2 10">Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1 10">
            <text>D-ribulose 5-phosphate = (2S)-2-hydroxy-3-oxobutyl phosphate + formate + H(+)</text>
            <dbReference type="Rhea" id="RHEA:18457"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:15740"/>
            <dbReference type="ChEBI" id="CHEBI:58121"/>
            <dbReference type="ChEBI" id="CHEBI:58830"/>
            <dbReference type="EC" id="4.1.99.12"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="10">
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </cofactor>
        <cofactor evidence="10">
            <name>Mn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29035"/>
        </cofactor>
        <text evidence="10">Binds 2 divalent metal cations per subunit. Magnesium or manganese.</text>
    </comment>
    <comment type="pathway">
        <text evidence="3 10">Cofactor biosynthesis; riboflavin biosynthesis; 2-hydroxy-3-oxobutyl phosphate from D-ribulose 5-phosphate: step 1/1.</text>
    </comment>
    <comment type="subunit">
        <text evidence="10">Homodimer.</text>
    </comment>
    <comment type="similarity">
        <text evidence="10">Belongs to the DHBP synthase family.</text>
    </comment>
    <comment type="similarity">
        <text evidence="5">In the C-terminal section; belongs to the GTP cyclohydrolase II family.</text>
    </comment>
    <comment type="similarity">
        <text evidence="4">In the N-terminal section; belongs to the DHBP synthase family.</text>
    </comment>
    <dbReference type="EC" id="4.1.99.12" evidence="6 10"/>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX35106.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_2468"/>
    <dbReference type="PRIDE" id="A9BVN9"/>
    <dbReference type="EnsemblBacteria" id="ABX35106">
        <property type="protein sequence ID" value="ABX35106"/>
        <property type="gene ID" value="Daci_2468"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_2468"/>
    <dbReference type="eggNOG" id="COG0108">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="eggNOG" id="COG0807">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_020273_1_2_4"/>
    <dbReference type="OMA" id="ECRGLIC"/>
    <dbReference type="UniPathway" id="UPA00275">
        <property type="reaction ID" value="UER00399"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008686">
        <property type="term" value="F:3,4-dihydroxy-2-butanone-4-phosphate synthase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000287">
        <property type="term" value="F:magnesium ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030145">
        <property type="term" value="F:manganese ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009231">
        <property type="term" value="P:riboflavin biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.10990">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00180">
        <property type="entry name" value="RibB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017945">
        <property type="entry name" value="DHBP_synth_RibB-like_a/b_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000422">
        <property type="entry name" value="DHBP_synthase_RibB"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR032677">
        <property type="entry name" value="GTP_cyclohydro_II"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036144">
        <property type="entry name" value="RibA-like_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00926">
        <property type="entry name" value="DHBP_synthase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00925">
        <property type="entry name" value="GTP_cyclohydro2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF142695">
        <property type="entry name" value="SSF142695"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55821">
        <property type="entry name" value="SSF55821"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00506">
        <property type="entry name" value="ribB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="10" id="KW-0456">Lyase</keyword>
    <keyword evidence="10" id="KW-0460">Magnesium</keyword>
    <keyword evidence="10" id="KW-0464">Manganese</keyword>
    <keyword evidence="9 10" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="14" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="8 10" id="KW-0686">Riboflavin biosynthesis</keyword>
    <feature type="domain" description="GTP_cyclohydro2" evidence="12">
        <location>
            <begin position="234"/>
            <end position="387"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="11">
        <location>
            <begin position="1"/>
            <end position="27"/>
        </location>
    </feature>
    <feature type="region of interest" description="D-ribulose 5-phosphate binding" evidence="10">
        <location>
            <begin position="50"/>
            <end position="51"/>
        </location>
    </feature>
    <feature type="region of interest" description="D-ribulose 5-phosphate binding" evidence="10">
        <location>
            <begin position="163"/>
            <end position="167"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="11">
        <location>
            <begin position="11"/>
            <end position="26"/>
        </location>
    </feature>
    <feature type="binding site" evidence="10">
        <location>
            <position position="51"/>
        </location>
    </feature>
    <feature type="binding site" evidence="10">
        <location>
            <position position="55"/>
        </location>
        <ligand>
            <name>D-ribulose 5-phosphate</name>
            <dbReference type="ChEBI" id="CHEBI:58121"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="10">
        <location>
            <position position="166"/>
        </location>
        <ligand>
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
            <label>2</label>
        </ligand>
    </feature>
    <feature type="site" description="Essential for catalytic activity" evidence="10">
        <location>
            <position position="149"/>
        </location>
    </feature>
    <feature type="site" description="Essential for catalytic activity" evidence="10">
        <location>
            <position position="187"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00000141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00002284"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00004904"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00005520"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00008976"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00012153"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00018836"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00022619"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00180"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="12">
        <source>
            <dbReference type="Pfam" id="PF00925"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="13">
        <source>
            <dbReference type="EMBL" id="ABX35106.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="14">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="389" mass="41935" checksum="BDF470716E72420E" modified="2008-01-15" version="1">MCRAPSARPGSSRRHSMNNSTSPVPISPVEDIIADMRAGRMVILVDEEDRENEGDLVLAADHVTPEAINFMARFGRGLICLTLTRERCEYLKLPPMAARNGTVYSTAFTVSIEAAEGVTTGISAADRARTVQAAVAKDSKPTDLVQPGHIFPLQAVDGGVLMRAGHTEAGCDFAALAGCSPAAVICEIMKDDGTMARLPDLQLFAAEHGLKIGTIADLIQYRSRNESLLSKVGTRPLQTAHGEFIAHAFRDLPSQSVHLALVKGQWEADTPVPVRVHEPLSVLDALETGRTLHSWSLDSSLEYIARQGHGVAVLLNCGETGDQLMAQFDGSARAAQAPERGRMDLRTYGVGAQILRECGVQRMQLMGQPRRLPSMAGYGLEISGYIPKE</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="70" xmlns="http://uniprot.org/uniprot">
    <accession>A9BVZ4</accession>
    <name>A9BVZ4_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="3">MATE efflux family protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Daci_2869</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="4" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX35507.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012204717.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_2869"/>
    <dbReference type="PRIDE" id="A9BVZ4"/>
    <dbReference type="EnsemblBacteria" id="ABX35507">
        <property type="protein sequence ID" value="ABX35507"/>
        <property type="gene ID" value="Daci_2869"/>
    </dbReference>
    <dbReference type="GeneID" id="60687145"/>
    <dbReference type="KEGG" id="dac:Daci_2869"/>
    <dbReference type="eggNOG" id="COG0534">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_012893_5_0_4"/>
    <dbReference type="OMA" id="NSMAGQN"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015297">
        <property type="term" value="F:antiporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0042910">
        <property type="term" value="F:xenobiotic transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002528">
        <property type="entry name" value="MATE_fam"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01554">
        <property type="entry name" value="MatE"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF006603">
        <property type="entry name" value="DinF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00797">
        <property type="entry name" value="matE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="2" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="30"/>
            <end position="47"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="67"/>
            <end position="96"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="108"/>
            <end position="133"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="153"/>
            <end position="174"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="186"/>
            <end position="207"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="213"/>
            <end position="234"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="263"/>
            <end position="288"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="308"/>
            <end position="328"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="348"/>
            <end position="370"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="382"/>
            <end position="402"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="409"/>
            <end position="432"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="438"/>
            <end position="461"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="23"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ABX35507.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="472" mass="49424" checksum="343991DC48A75A35" modified="2008-01-15" version="1">MTKPTEPLPQAAAPAASSPGGPPIAGSQPLWRTFLVFLGPMVLANILQSLSGTINSVFIGQMLGVQALAAVAAFFPVMFLFIAFVIGLGAGSSVLIGQAYGARMHDKLRAIAGTAMCIGLLFGAIVALFGGLFTEPLMRLLGTPPDIMEQATLYSRIVLLGMPGLFVFLLATSLLRGVGDTVSPMLALLISTGTGLACTPALIAGWAGLPRLGVASAGVSMILGFTLALAWLGWRLRRIGSPLAPNAALWKAMRIDRTLLKSILRVGIPTGVQMIASSMAGLVVVSLVNGFGSSATAAYGAVNQINSFAQFPVISVAITASILGAQAIGAGRSERLGAITATAIRMNLALGAALALIGSLFARPLLGMFITDEQVLVLAIELLYIVLWSGLLLGCFIALSSIMRASGDVVIPTAITITVLAVLELPMAWWLSRGFGLMGIWMALPLSYTLTLCLQTAYYKLVWKKRPIRRMV</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="49" xmlns="http://uniprot.org/uniprot">
    <accession>A9BW56</accession>
    <name>A9BW56_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">PhageMetallopep domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_3234</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX35872.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012205072.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_3234"/>
    <dbReference type="PRIDE" id="A9BW56"/>
    <dbReference type="EnsemblBacteria" id="ABX35872">
        <property type="protein sequence ID" value="ABX35872"/>
        <property type="gene ID" value="Daci_3234"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_3234"/>
    <dbReference type="eggNOG" id="ENOG502ZC2W">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_089913_0_0_4"/>
    <dbReference type="OMA" id="RACGTCM"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043998">
        <property type="entry name" value="Put_Metallopep"/>
    </dbReference>
    <dbReference type="Pfam" id="PF18894">
        <property type="entry name" value="PhageMetallopep"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="PhageMetallopep" evidence="1">
        <location>
            <begin position="34"/>
            <end position="188"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF18894"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX35872.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="210" mass="22911" checksum="2012C9D809A51147" modified="2008-01-15" version="1">MATPAKAKPAAAIGARPYPPAELGRYVPAEGVAEWVQAEIIAEDGRIHNPDHAHLIDADLVFLWAPDGFTKAMKTVIGQAEEVMIRAGGWQKGRQEQQLYDWFGRVPAFMITLDATYCAQCSDAEWCALVEHELYHVAQALDEFGAPKFGRDGKPKLKIRGHDVEEFVGVVKRYGPSADVKRLMDAANAGPELRMGNIAHACGTCLKVAA</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="87" xmlns="http://uniprot.org/uniprot">
    <accession>A9BWA7</accession>
    <name>A9BWA7_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="6">Molybdopterin oxidoreductase Fe4S4 region</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ordered locus">Daci_3491</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="7" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX36127.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_3491"/>
    <dbReference type="PRIDE" id="A9BWA7"/>
    <dbReference type="EnsemblBacteria" id="ABX36127">
        <property type="protein sequence ID" value="ABX36127"/>
        <property type="gene ID" value="Daci_3491"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_3491"/>
    <dbReference type="eggNOG" id="COG0243">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_061371_1_1_4"/>
    <dbReference type="OMA" id="AGSNEWK"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051539">
        <property type="term" value="F:4 iron, 4 sulfur cluster binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016491">
        <property type="term" value="F:oxidoreductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006656">
        <property type="entry name" value="Mopterin_OxRdtase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006963">
        <property type="entry name" value="Mopterin_OxRdtase_4Fe-4S_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006311">
        <property type="entry name" value="TAT_signal"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04879">
        <property type="entry name" value="Molybdop_Fe4S4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00384">
        <property type="entry name" value="Molybdopterin"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00926">
        <property type="entry name" value="Molybdop_Fe4S4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51669">
        <property type="entry name" value="4FE4S_MOW_BIS_MGD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51318">
        <property type="entry name" value="TAT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-0004">4Fe-4S</keyword>
    <keyword evidence="1 3" id="KW-0408">Iron</keyword>
    <keyword evidence="2 3" id="KW-0411">Iron-sulfur</keyword>
    <keyword evidence="3" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="4">
        <location>
            <begin position="1"/>
            <end position="34"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5005661253" evidence="4">
        <location>
            <begin position="35"/>
            <end position="196"/>
        </location>
    </feature>
    <feature type="domain" description="4Fe-4S Mo/W bis-MGD-type" evidence="5">
        <location>
            <begin position="44"/>
            <end position="107"/>
        </location>
    </feature>
    <feature type="binding site" evidence="3">
        <location>
            <position position="51"/>
        </location>
        <ligand>
            <name>[4Fe-4S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:49883"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="3">
        <location>
            <position position="54"/>
        </location>
        <ligand>
            <name>[4Fe-4S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:49883"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="3">
        <location>
            <position position="58"/>
        </location>
        <ligand>
            <name>[4Fe-4S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:49883"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="3">
        <location>
            <position position="93"/>
        </location>
        <ligand>
            <name>[4Fe-4S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:49883"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023004"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023014"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU01004"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="PROSITE" id="PS51669"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="ABX36127.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="196" mass="21540" checksum="010F253FB5636919" modified="2008-01-15" version="1">MVQFSRRQFMKVTGSTLAGSSLALMGFSPTAALAEVRQFKLAATTVTRQTCTYCSVGCGILMYSLSDGAKNAKLSVIHVEGDPDHPVNRGTLCPKGASLLDFVHSPHRLKYPEYRAPGSNEWKRMSWDEALTRITKLLKDDRDANFVEQNDKGQTVNRWLTTGMLAASASSNEAGYVTHKVARSWGLLALDNQARV</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="60" xmlns="http://uniprot.org/uniprot">
    <accession>A9BWK0</accession>
    <name>A9BWK0_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="3">AcnD-accessory protein PrpF</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Daci_3586</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="4" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the PrpF family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX36220.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012205420.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_3586"/>
    <dbReference type="PRIDE" id="A9BWK0"/>
    <dbReference type="EnsemblBacteria" id="ABX36220">
        <property type="protein sequence ID" value="ABX36220"/>
        <property type="gene ID" value="Daci_3586"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_3586"/>
    <dbReference type="eggNOG" id="COG2828">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_026443_2_0_4"/>
    <dbReference type="OMA" id="VPATYMR"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016853">
        <property type="term" value="F:isomerase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0019629">
        <property type="term" value="P:propionate catabolic process, 2-methylcitrate cycle"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012709">
        <property type="entry name" value="PrpF"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007400">
        <property type="entry name" value="PrpF_protein"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43709">
        <property type="entry name" value="PTHR43709"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04303">
        <property type="entry name" value="PrpF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR02334">
        <property type="entry name" value="prpF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2" id="KW-0413">Isomerase</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00007673"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023235"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ABX36220.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="398" mass="41643" checksum="EEE0D301D6722721" modified="2008-01-15" version="1">MNTTPQIRIPATYLRGGTSKGVFFRLQDLPEAAQQPGPVRDAILLRALGSPDPYGKQIDGMGNASSSTSKAVILSASTREGHDVDYLFGQVSIDRPFVDWSGNCGNLSAAVGPCAIHMGLIAPARIPRNGTVTLRIWQANIGKTIVAHVPITNGQVQETGDFELDGVTFPAAEVALEFLDPADEGEDGGAMFPTGHLVDRLDVPGVGSFAATLINAGIPTIFLNAKDLGYTGCELQDAINGDAEALARFEAIRAHGALQMGLIQELSEAARRQHTPKIAFVAPPAPYTASSGKRIEAGDVDLLVRALSMGKLHHAMMGTAAVAIGTAAAVPGTLVNLAAGGGERGAVRFGHPSGTLRVGAEARLVNGQWHVTKALMSRSARILMEGWIRVPGEVLNAA</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="74" xmlns="http://uniprot.org/uniprot">
    <accession>A9BWT8</accession>
    <name>A9BWT8_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="8">Oligopeptidase A</fullName>
            <ecNumber evidence="8">3.4.24.70</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="12" type="ordered locus">Daci_3984</name>
    </gene>
    <organism evidence="12 13">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="12 13" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="13">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="13" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="13">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="7">
            <text>Hydrolysis of oligopeptides, with broad specificity. Gly or Ala commonly occur as P1 or P1' residues, but more distant residues are also important, as is shown by the fact that Z-Gly-Pro-Gly-|-Gly-Pro-Ala is cleaved, but not Z-(Gly)(5).</text>
            <dbReference type="EC" id="3.4.24.70"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="9">
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </cofactor>
        <text evidence="9">Binds 1 zinc ion.</text>
    </comment>
    <comment type="similarity">
        <text evidence="1 9">Belongs to the peptidase M3 family.</text>
    </comment>
    <dbReference type="EC" id="3.4.24.70" evidence="8"/>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX36615.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012205809.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_3984"/>
    <dbReference type="MEROPS" id="M03.004"/>
    <dbReference type="PRIDE" id="A9BWT8"/>
    <dbReference type="EnsemblBacteria" id="ABX36615">
        <property type="protein sequence ID" value="ABX36615"/>
        <property type="gene ID" value="Daci_3984"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_3984"/>
    <dbReference type="eggNOG" id="COG0339">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_001805_4_1_4"/>
    <dbReference type="OMA" id="KNFQSAM"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004222">
        <property type="term" value="F:metalloendopeptidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006508">
        <property type="term" value="P:proteolysis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd06456">
        <property type="entry name" value="M3A_DCP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.1370.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.390.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR034005">
        <property type="entry name" value="M3A_DCP"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR024079">
        <property type="entry name" value="MetalloPept_cat_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR024077">
        <property type="entry name" value="Neurolysin/TOP_dom2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045666">
        <property type="entry name" value="OpdA_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045090">
        <property type="entry name" value="Pept_M3A_M3B"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001567">
        <property type="entry name" value="Pept_M3A_M3B_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11804">
        <property type="entry name" value="PTHR11804"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01432">
        <property type="entry name" value="Peptidase_M3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF19310">
        <property type="entry name" value="TOP_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4 9 12" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="3 9" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="6 9" id="KW-0482">Metalloprotease</keyword>
    <keyword evidence="2 9" id="KW-0645">Protease</keyword>
    <keyword evidence="13" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="5 9" id="KW-0862">Zinc</keyword>
    <feature type="domain" description="TOP_N" evidence="11">
        <location>
            <begin position="34"/>
            <end position="145"/>
        </location>
    </feature>
    <feature type="domain" description="Peptidase_M3" evidence="10">
        <location>
            <begin position="218"/>
            <end position="678"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00006040"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022670"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022833"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023049"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00024603"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00026100"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="RuleBase" id="RU003435"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="10">
        <source>
            <dbReference type="Pfam" id="PF01432"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="11">
        <source>
            <dbReference type="Pfam" id="PF19310"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="EMBL" id="ABX36615.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="13">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="682" mass="76400" checksum="37FBDE03343B7BAB" modified="2008-01-15" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="57" xmlns="http://uniprot.org/uniprot">
    <accession>A9BX96</accession>
    <name>A9BX96_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Putative transmembrane protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Daci_5543</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="4" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX38172.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012207341.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_5543"/>
    <dbReference type="PRIDE" id="A9BX96"/>
    <dbReference type="EnsemblBacteria" id="ABX38172">
        <property type="protein sequence ID" value="ABX38172"/>
        <property type="gene ID" value="Daci_5543"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_5543"/>
    <dbReference type="eggNOG" id="COG2203">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_046136_1_0_4"/>
    <dbReference type="OMA" id="NHYLLRI"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.450.40">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.70.2880">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029016">
        <property type="entry name" value="GAF-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR031583">
        <property type="entry name" value="PelD_GGDEF"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038367">
        <property type="entry name" value="PelD_GGDEF_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF16963">
        <property type="entry name" value="PelD_GGDEF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1 3" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="42"/>
            <end position="62"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="82"/>
            <end position="107"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="119"/>
            <end position="137"/>
        </location>
    </feature>
    <feature type="domain" description="PelD_GGDEF" evidence="2">
        <location>
            <begin position="331"/>
            <end position="451"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF16963"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ABX38172.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="459" mass="50492" checksum="C9928CB531263FC8" modified="2008-01-15" version="1">MPDQASTPKAAPHSAAPRRAGIAAEFRGSPLGLLVQTSAKPWVVVGETLLLPVLALLIGMWANPDNPLWVESEFPWAWLAPVVVALRYGPVAGLSAAGVLLLAWLGVNQRDLSLFPEQYFLGGLILVMVVGEISSLWRARIRRARTAQNYMDQRTEQLIRQHYLLRLSHDRLEQELIGRPVSMRDAINVLSGLSGAEGDAQSLLNLLSRFSQISVASLVPVRNEVLDPTPIAQLGGERPIHVHDPLVRQALDSHVLCHVSQSMAEGQQTQYIVVAPMLDLEGEIYGLLLVEEMPFFALQEEALQTINLLLGYYTDSVAANSLAAPLLQAYPDCPPHFAFELQRMEHVNRSARLSSVVVALELSPSAVQAQMAQQIMRLERMLDRSWLQESDGRQLLAIFMPLGTNATAEGYLNRIEGWLAQRGVASLADAGIFPRTILLDRCSASSVLERLHQMGQGHA</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="67" xmlns="http://uniprot.org/uniprot">
    <accession>A9BXC0</accession>
    <name>A9BXC0_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Alkaline phosphatase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ordered locus">Daci_5567</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="5" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the alkaline phosphatase family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX38196.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_5567"/>
    <dbReference type="PRIDE" id="A9BXC0"/>
    <dbReference type="EnsemblBacteria" id="ABX38196">
        <property type="protein sequence ID" value="ABX38196"/>
        <property type="gene ID" value="Daci_5567"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_5567"/>
    <dbReference type="eggNOG" id="COG1785">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_008539_4_1_4"/>
    <dbReference type="OMA" id="RIMSKGM"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016791">
        <property type="term" value="F:phosphatase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd16012">
        <property type="entry name" value="ALP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.720.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001952">
        <property type="entry name" value="Alkaline_phosphatase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017850">
        <property type="entry name" value="Alkaline_phosphatase_core_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11596">
        <property type="entry name" value="PTHR11596"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00245">
        <property type="entry name" value="Alk_phosphatase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00113">
        <property type="entry name" value="ALKPHPHTASE"/>
    </dbReference>
    <dbReference type="SMART" id="SM00098">
        <property type="entry name" value="alkPPc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53649">
        <property type="entry name" value="SSF53649"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="3">
        <location>
            <begin position="1"/>
            <end position="40"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5002735925" evidence="3">
        <location>
            <begin position="41"/>
            <end position="518"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="423"/>
            <end position="442"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="2">
        <location>
            <begin position="423"/>
            <end position="439"/>
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        <source>
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        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="ABX38196.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="518" mass="54684" checksum="EA5EBC6A444B52F8" modified="2008-01-15" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="51" xmlns="http://uniprot.org/uniprot">
    <accession>A9BXE0</accession>
    <name>A9BXE0_DELAS</name>
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        <submittedName>
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        </submittedName>
    </protein>
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        <name evidence="8" type="ordered locus">Daci_5587</name>
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        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
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                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
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            <dbReference type="PubMed" id="15240283"/>
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        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
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            <strain evidence="9">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
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        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
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            <strain evidence="9">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
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        </subcellularLocation>
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        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
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        <property type="entry name" value="Cyt_c_assembly"/>
    </dbReference>
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    </dbReference>
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        <property type="entry name" value="Cyt_c_biogenesis_CcsA/CcmC"/>
    </dbReference>
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        <property type="entry name" value="PTHR30071"/>
        <property type="match status" value="1"/>
    </dbReference>
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        <property type="entry name" value="Cytochrom_C_asm"/>
        <property type="match status" value="1"/>
    </dbReference>
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        <property type="entry name" value="cytochr_II_ccsB"/>
        <property type="match status" value="1"/>
    </dbReference>
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    </feature>
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    </evidence>
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        <source>
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        </source>
    </evidence>
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        <source>
            <dbReference type="Pfam" id="PF01578"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="ABX38216.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="446" mass="50348" checksum="0565706599B19F1B" modified="2008-01-15" version="1">MNTATTTTTLTLNEGFFARRNWFDWVFAALVAAGLLYALQRYGEYMDVYEKCILVGTIPSAIWLGWFWRPLRGLMLVVAGLSLLAIGLYQGPEGAQLARSDTVFGLKYFLSSQSAILWMSMVFFMSTVFYWIGMFARGEGTALSLLGSRLAWLAVTLALVGTMVRWYESYLIGPDVGHIPVSNLYEVFVMFCWMTALFYLYYEQHYDTRALGGFVMLVVSAAVGFLLWYTLVREAHEIQPLVPALKSWWMKLHVPANFIGYGTFALAAMVSFAYLIKQQATETRWYKLAPLWMLGVVLCFEPIVFRQGATQNGGSYWMVYFGISALIVAGILLARKRIAERLPSFELLDDVMYKSIAVGFAFFTIATVLGALWAAEAWGGYWSWDPKETWALIVWLNYAAWLHMRLVKGLRGTVSAWWALGGLAITTFAFLGVNMFLSGLHSYGEL</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2021-09-29" version="58" xmlns="http://uniprot.org/uniprot">
    <accession>A9BXH7</accession>
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        </submittedName>
    </protein>
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    <organism evidence="3 4">
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            <taxon>Betaproteobacteria</taxon>
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    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
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                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
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            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="4" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX38253.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
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    <dbReference type="STRING" id="398578.Daci_5624"/>
    <dbReference type="EnsemblBacteria" id="ABX38253">
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        <property type="gene ID" value="Daci_5624"/>
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    <dbReference type="OMA" id="ETMQVQW"/>
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        <property type="component" value="Chromosome"/>
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        <property type="term" value="C:integral component of membrane"/>
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    </dbReference>
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        <property type="entry name" value="EamA_dom"/>
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        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
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        <source>
            <dbReference type="Pfam" id="PF00892"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ABX38253.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="296" mass="30986" checksum="97EA9C94726359BF" modified="2008-01-15" version="1">MTQKTSPPAMAAALLPWLFVLLWSTGFIGAKFGLPYVEPLTFLTLRYAIVLVLMAAVALVLRAPWPRSARQWLHIGVSGLFVHGVYLAGVFTAIAHGLPSGVTALVVGLQPLITALVAGTLLGESVRPRQWAGLALGFTGVALVVAGKIASVPVHALLAMLVPAVVALAGITAGTLYQKRFCPSFDLRTGSVIQYLPCLVATGALALATETMQVRWSGEFLFALGWLVLVLSVGAVSLLNLLIRRGGAVHVASLFYLTPPATALIAWAMFGETLGGLALAGMALTAAGVWLARQGR</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="61" xmlns="http://uniprot.org/uniprot">
    <accession>A9BXL4</accession>
    <name>A9BXL4_DELAS</name>
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        <submittedName>
            <fullName evidence="2">Putative transcriptional regulator, GntR family</fullName>
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    <reference evidence="2 3" key="1">
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                <person name="Fischer K."/>
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            <dbReference type="PubMed" id="15240283"/>
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        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX38290.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
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        <property type="nucleotide sequence ID" value="NC_010002.1"/>
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    <dbReference type="STRING" id="398578.Daci_5662"/>
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    <dbReference type="EnsemblBacteria" id="ABX38290">
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        <property type="gene ID" value="Daci_5662"/>
    </dbReference>
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        <property type="term" value="F:catalytic activity"/>
        <property type="evidence" value="ECO:0007669"/>
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    </dbReference>
    <dbReference type="GO" id="GO:0030170">
        <property type="term" value="F:pyridoxal phosphate binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009058">
        <property type="term" value="P:biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.640.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.1150.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004839">
        <property type="entry name" value="Aminotransferase_I/II"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015424">
        <property type="entry name" value="PyrdxlP-dep_Trfase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015421">
        <property type="entry name" value="PyrdxlP-dep_Trfase_major"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015422">
        <property type="entry name" value="PyrdxlP-dep_Trfase_small"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00155">
        <property type="entry name" value="Aminotran_1_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53383">
        <property type="entry name" value="SSF53383"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Aminotran_1_2" evidence="1">
        <location>
            <begin position="60"/>
            <end position="416"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF00155"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX38290.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="425" mass="45023" checksum="5C2D91B7B6B26906" modified="2008-01-15" version="1">MSTADQGASSPTAHLFNPLFAQPEGSPIRELFPYLSRPGMLSLAGGYPSPSLFDAEGLQQAAMAALQQDAATSLQYGASEGQLALREALAALCATRGIACTPADMIVTTGSQQAFDLLVKVLVEPGDPVLVEVPAYPATLQTLKLAQAQVVAVPTDEQGLDTEALARLLAQWPHARAPKMLYTVPNFSNPGGTLLPAARRTALVELARQHGFVIVEDDPYGELRFAGQREPSIYETGLALCGAQANPVVYLSSLSKTVAPALRIGWMLADAQLLRRCTIAKQTADLCTSPLAQMIAAHYLRSGRYAPQLAQACAEYAARMDALCSGMQSALGDQIRFVRPAGGMFVWARLLPPQRLAGDSQALARALFTAAVEQGVLYVPGKAFFPADAADKAGLCMRLSYAAPTVPQITEAVARLGRAWGQAVS</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="58" xmlns="http://uniprot.org/uniprot">
    <accession>A9BXL5</accession>
    <name>A9BXL5_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">DUF1338 domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_5663</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX38291.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012207460.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_5663"/>
    <dbReference type="PRIDE" id="A9BXL5"/>
    <dbReference type="EnsemblBacteria" id="ABX38291">
        <property type="protein sequence ID" value="ABX38291"/>
        <property type="gene ID" value="Daci_5663"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_5663"/>
    <dbReference type="eggNOG" id="COG5383">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_026640_0_0_4"/>
    <dbReference type="OMA" id="RAMSDMY"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="CDD" id="cd16348">
        <property type="entry name" value="VOC_YdcJ_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009770">
        <property type="entry name" value="DUF1338"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07063">
        <property type="entry name" value="DUF1338"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM01150">
        <property type="entry name" value="DUF1338"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="DUF1338" evidence="1">
        <location>
            <begin position="16"/>
            <end position="415"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="SMART" id="SM01150"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX38291.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="471" mass="51019" checksum="781BCB73CC2321D8" modified="2008-01-15" version="1">MSSTPAHTFVPSDEIRARFSSAMSEMYRDEVPQYGTLIELVADINQRTLQAEPALLARMQRSGELARLGVERHGAIRVGTAAELSMLRRLFAIMGMEPVGYYDLSVAGVPVHSTAFRPVGDAALLANPFRVFTSLLRLDLIADEALRAQAAAILARRNIFTERALALIAQSEANGGLTDAEADEFVGEALETFRWHSESTVDGTTYDALHKAHRLIADVVCFKGPHINHLTPRTLDIDAAQAAMPERGMDAKDVVEGPPRRDCPILLRQTSFKALKETVRFAGDATGAGSHTARFGEIEQRGVALTRKGRALYDQLLAQVRDMGSAGSAALDYGSRLAQVFEAFPDTHEQLRRQDLAFYRFTLSDEGAALAAGEAAAAAASDLDALIARGLAQAEPIVYEDFLPVSAAGIFQSNLGGEEQKQYAAHAAQQAFEADLGARVHDEIALYEQAQQRSIDQLRSALRGQATKVAA</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="55" xmlns="http://uniprot.org/uniprot">
    <accession>A9BXM5</accession>
    <name>A9BXM5_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Extracellular solute-binding protein family 3</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ordered locus">Daci_5673</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="5" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX38301.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012207470.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_5673"/>
    <dbReference type="PRIDE" id="A9BXM5"/>
    <dbReference type="EnsemblBacteria" id="ABX38301">
        <property type="protein sequence ID" value="ABX38301"/>
        <property type="gene ID" value="Daci_5673"/>
    </dbReference>
    <dbReference type="GeneID" id="60690036"/>
    <dbReference type="KEGG" id="dac:Daci_5673"/>
    <dbReference type="eggNOG" id="COG0834">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_019602_0_0_4"/>
    <dbReference type="OMA" id="PNQLDCL"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001638">
        <property type="entry name" value="Solute-binding_3/MltF_N"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00497">
        <property type="entry name" value="SBP_bac_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00062">
        <property type="entry name" value="PBPb"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1 2" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="2">
        <location>
            <begin position="1"/>
            <end position="22"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5002735194" evidence="2">
        <location>
            <begin position="23"/>
            <end position="299"/>
        </location>
    </feature>
    <feature type="domain" description="PBPb" evidence="3">
        <location>
            <begin position="37"/>
            <end position="265"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022729"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="SMART" id="SM00062"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="ABX38301.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="299" mass="32088" checksum="2A58CB907A0BC7D4" modified="2008-01-15" version="1">MRFVLAHVAMACVVAATGAAHAQEAAGTLDKIQSTGKVVMGVRESSAPMAYAFGTTQKYVGYHVELCEKVLAQIVPKAKIEYMALTSQNTMPLVQNGTVDIGCGPTTNNLARQKQVAFAVTTYVSQVRMAVRADSGITSFKQLDGKPVAASAGTTAVQLLRKYGRDNGVNLPTSLGKDHFESFLMLESGRADAFVLDDNLLAGVIANSKNPAGFKIVGEVLGSEPIAILFRRDDPAFKKAVDDVLVGMMASGEVAKIYDKWFVQPIPPKNAPLNLPMSDLLKQLLQKPNDKPLESYAQQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="58" xmlns="http://uniprot.org/uniprot">
    <accession>A9BXR8</accession>
    <name>A9BXR8_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Acetyltransferase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_5716</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX38344.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012207513.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_5716"/>
    <dbReference type="PRIDE" id="A9BXR8"/>
    <dbReference type="EnsemblBacteria" id="ABX38344">
        <property type="protein sequence ID" value="ABX38344"/>
        <property type="gene ID" value="Daci_5716"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_5716"/>
    <dbReference type="eggNOG" id="COG1670">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_013985_15_0_4"/>
    <dbReference type="OMA" id="GIWIRED"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008080">
        <property type="term" value="F:N-acetyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016181">
        <property type="entry name" value="Acyl_CoA_acyltransferase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000182">
        <property type="entry name" value="GNAT_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13302">
        <property type="entry name" value="Acetyltransf_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55729">
        <property type="entry name" value="SSF55729"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51186">
        <property type="entry name" value="GNAT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="N-acetyltransferase" evidence="1">
        <location>
            <begin position="13"/>
            <end position="169"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS51186"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX38344.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="177" mass="19505" checksum="DA7C3DDC44C134BB" modified="2008-01-15" version="1">MSWSDTTITSQRLALRPFTAADADEAFACITPTLTRYLSFEPASTPAEFEAVWRGWLQEIAAGTDFNFTLRERTSGRFTGLLGLHRARDAEPELGIWIREDVHGQGYGREAVAALAAWTRATFAPQSLRYPVAEPNTASRRIAQRLGGMEVERQSLSKYVLVVYRIPGVATSGVAAP</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="67" xmlns="http://uniprot.org/uniprot">
    <accession>A9BXU9</accession>
    <name>A9BXU9_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Cobalamin biosynthesis protein CobW</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Daci_5747</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="4" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the SIMIBI class G3E GTPase family. CobW subfamily.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX38375.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012207544.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_5747"/>
    <dbReference type="PRIDE" id="A9BXU9"/>
    <dbReference type="EnsemblBacteria" id="ABX38375">
        <property type="protein sequence ID" value="ABX38375"/>
        <property type="gene ID" value="Daci_5747"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_5747"/>
    <dbReference type="eggNOG" id="COG0523">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_017452_1_0_4"/>
    <dbReference type="OMA" id="IDVENWE"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009236">
        <property type="term" value="P:cobalamin biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.1220.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012824">
        <property type="entry name" value="Cbl_biosynth_CobW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011629">
        <property type="entry name" value="Cbl_biosynth_CobW-like_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036627">
        <property type="entry name" value="CobW-likC_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003495">
        <property type="entry name" value="CobW/HypB/UreG_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02492">
        <property type="entry name" value="cobW"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07683">
        <property type="entry name" value="CobW_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00833">
        <property type="entry name" value="CobW_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR02475">
        <property type="entry name" value="CobW"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="CobW C-terminal" evidence="2">
        <location>
            <begin position="257"/>
            <end position="348"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00008073"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="SMART" id="SM00833"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ABX38375.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="349" mass="38295" checksum="7A7FBD954B067D95" modified="2008-01-15" version="1">MQTAKIPATIVTGFLGSGKTTLLRHILDNADGRRIAVIVNEFGELGIDGEILKGCGIGCDDEGNEREGALYELANGCMCCTVQEEFFPVMRALAERRDQIDAVIIETSGLALPKPLVQAFQWPEIANVFTVDAVVTVVDTPAAASGQFAANPQAVDELRRADPNLDHESPLHELFEDQLGAADLVVLNKTDLADAEALARVTALVREELPPEVKIVQSSQGRLPLDVVLGLAKAAETTIDQRVSHHDHDEDHDHDDFDSYVIDLPAVDRDRLLAALETLVEQHSILRVKGFADIPGKPMRWLLQGVGRRFDHHFDRAWREGEQRGTRLVFIGQDLDEAALRKGLENVAA</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="80" xmlns="http://uniprot.org/uniprot">
    <accession>A9BY65</accession>
    <name>A9BY65_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Transcriptional regulator, LysR family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Daci_1560</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="4" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the LysR transcriptional regulatory family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX34204.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012203490.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_1560"/>
    <dbReference type="PRIDE" id="A9BY65"/>
    <dbReference type="EnsemblBacteria" id="ABX34204">
        <property type="protein sequence ID" value="ABX34204"/>
        <property type="gene ID" value="Daci_1560"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_1560"/>
    <dbReference type="eggNOG" id="COG0583">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_039613_16_2_4"/>
    <dbReference type="OMA" id="HMTVSAI"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003700">
        <property type="term" value="F:DNA-binding transcription factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005119">
        <property type="entry name" value="LysR_subst-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000847">
        <property type="entry name" value="Tscrpt_reg_HTH_LysR"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036390">
        <property type="entry name" value="WH_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00126">
        <property type="entry name" value="HTH_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03466">
        <property type="entry name" value="LysR_substrate"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00039">
        <property type="entry name" value="HTHLYSR"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46785">
        <property type="entry name" value="SSF46785"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50931">
        <property type="entry name" value="HTH_LYSR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HTH lysR-type" evidence="2">
        <location>
            <begin position="5"/>
            <end position="62"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00009437"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS50931"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ABX34204.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="307" mass="33641" checksum="BD548CDF70EC6FB5" modified="2008-01-15" version="1">MPRLPDLEAWAIFAKVAETGSFAKAAADLGVSQPTISKAITRLETRLKTSLFHRTSRRMSLTASGQASLERAARILAEGEAVEAEISEQSKSLRGPIRIAAPMSFGISHLAPAVPAFMAEHPEVTLDLHFSDELIDVVAQGFDIALRISSLPDSSLLARRLCTVRLLLVGSPEYFERHGRPSHPRELAQHRALRYVHSRLGEAWRFVHARRGEFAQVVPTAMRVNNAEGLAPALRAGLGLALQPEFLAWEDLQSGALQTCMDDWQVPSIALHIVTPPGRARPARVQALIDFLAAHFALAPWAREPQA</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="46" xmlns="http://uniprot.org/uniprot">
    <accession>A9BYF7</accession>
    <name>A9BYF7_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_1653</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX34296.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012203581.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_1653"/>
    <dbReference type="PRIDE" id="A9BYF7"/>
    <dbReference type="EnsemblBacteria" id="ABX34296">
        <property type="protein sequence ID" value="ABX34296"/>
        <property type="gene ID" value="Daci_1653"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_1653"/>
    <dbReference type="eggNOG" id="ENOG502ZERC">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_2033005_0_0_4"/>
    <dbReference type="OMA" id="QHRVDTW"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="6"/>
            <end position="24"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX34296.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="121" mass="12197" checksum="6C46A3920625F731" modified="2008-01-15" version="1">MITPTQAIVAVLAAGNLLLGWAWLSARDDTATARAELVGMQQQRDGALKGAQACSEATEALGAVAAQRAAEAAPARAAAAGQAAALNARADYTLSRQPAQGDSCAALQALGADWLKGRAKP</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="66" xmlns="http://uniprot.org/uniprot">
    <accession>A9BYI2</accession>
    <name>A9BYI2_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">CoA-binding domain protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_1885</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX34525.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012203810.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_1885"/>
    <dbReference type="PRIDE" id="A9BYI2"/>
    <dbReference type="EnsemblBacteria" id="ABX34525">
        <property type="protein sequence ID" value="ABX34525"/>
        <property type="gene ID" value="Daci_1885"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_1885"/>
    <dbReference type="eggNOG" id="COG0045">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="eggNOG" id="COG1042">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_007415_3_1_4"/>
    <dbReference type="OMA" id="PIVECAG"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.1490.20">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.261">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013815">
        <property type="entry name" value="ATP_grasp_subdomain_1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003781">
        <property type="entry name" value="CoA-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036291">
        <property type="entry name" value="NAD(P)-bd_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR032875">
        <property type="entry name" value="Succ_CoA_lig_flav_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016102">
        <property type="entry name" value="Succinyl-CoA_synth-like"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13380">
        <property type="entry name" value="CoA_binding_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13607">
        <property type="entry name" value="Succ_CoA_lig"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00881">
        <property type="entry name" value="CoA_binding"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51735">
        <property type="entry name" value="SSF51735"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52210">
        <property type="entry name" value="SSF52210"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="CoA_binding" evidence="1">
        <location>
            <begin position="27"/>
            <end position="122"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="SMART" id="SM00881"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX34525.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="708" mass="73007" checksum="5C6326C6C66CF92E" modified="2008-01-15" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="32" xmlns="http://uniprot.org/uniprot">
    <accession>A9BYL8</accession>
    <name>A9BYL8_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
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        <name evidence="1" type="ordered locus">Daci_1921</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
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                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="2" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX34561.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012203846.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_1921"/>
    <dbReference type="PRIDE" id="A9BYL8"/>
    <dbReference type="EnsemblBacteria" id="ABX34561">
        <property type="protein sequence ID" value="ABX34561"/>
        <property type="gene ID" value="Daci_1921"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_1921"/>
    <dbReference type="HOGENOM" id="CLU_2616176_0_0_4"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ABX34561.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="78" mass="8973" checksum="FB017D8D223BA8D5" modified="2008-01-15" version="1">MADKCKKDRCGEVEFCEAAKTAWAEGFIEHQTLKNRTTGKRRERMALMKGKFSMELPFCPFCRANVNTAPKEPQQCNE</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="37" xmlns="http://uniprot.org/uniprot">
    <accession>A9BYN2</accession>
    <name>A9BYN2_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Daci_1935</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
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            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="2" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX34575.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012203860.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_1935"/>
    <dbReference type="PRIDE" id="A9BYN2"/>
    <dbReference type="EnsemblBacteria" id="ABX34575">
        <property type="protein sequence ID" value="ABX34575"/>
        <property type="gene ID" value="Daci_1935"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_1935"/>
    <dbReference type="HOGENOM" id="CLU_2552652_0_0_4"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ABX34575.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="82" mass="9182" checksum="F89F7438043028FE" modified="2008-01-15" version="1">MTPTGIEAQVCEDIARRQQFGLHKYGTTVAQNPLELRQWLKHAYEEALDQAIYLRRAMAEIDAITGHDELADMVRAGKGAQA</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="43" xmlns="http://uniprot.org/uniprot">
    <accession>A9BYP7</accession>
    <name>A9BYP7_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Constituent protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Daci_1950</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="2" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX34590.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012203875.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_1950"/>
    <dbReference type="PRIDE" id="A9BYP7"/>
    <dbReference type="EnsemblBacteria" id="ABX34590">
        <property type="protein sequence ID" value="ABX34590"/>
        <property type="gene ID" value="Daci_1950"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_1950"/>
    <dbReference type="eggNOG" id="ENOG5032ZCW">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_114914_0_0_4"/>
    <dbReference type="OMA" id="HPDIYLF"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ABX34590.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="205" mass="22593" checksum="B3594EB78C1903BB" modified="2008-01-15" version="1">MSLTTYAGLQASIARWLKRSDLTANIPDFISLAEGRIARDLRLRKQITKVTLVTTGGVQGVDLPDNYLEAENITLDGGEPRQLTFVPIEHLDTKYPANYTAMPGVYTLLGNQLLLGPVPDGVYNIDVTYYARFVPLSDVNTTNWLLQNHPSIYLFSALAEAELFLVNDERAVLWASKATQEIGTLQSVDDAAVHSGTALRVRTVN</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="55" xmlns="http://uniprot.org/uniprot">
    <accession>A9BYR4</accession>
    <name>A9BYR4_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Endoribonuclease L-PSP</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Daci_2169</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
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            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="2" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX34809.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_2169"/>
    <dbReference type="PRIDE" id="A9BYR4"/>
    <dbReference type="EnsemblBacteria" id="ABX34809">
        <property type="protein sequence ID" value="ABX34809"/>
        <property type="gene ID" value="Daci_2169"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_2169"/>
    <dbReference type="eggNOG" id="COG0251">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_100715_7_3_4"/>
    <dbReference type="OMA" id="FAKPWPV"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.1330.40">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035959">
        <property type="entry name" value="RutC-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006175">
        <property type="entry name" value="YjgF/YER057c/UK114"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11803">
        <property type="entry name" value="PTHR11803"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01042">
        <property type="entry name" value="Ribonuc_L-PSP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55298">
        <property type="entry name" value="SSF55298"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ABX34809.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="148" mass="16130" checksum="349F02A783FEBFCC" modified="2008-01-15" version="1">MGRAKFPAQEHHAFACSQNTRKSMKQIIDVGLPPLKQPFSWAVKASGQMLFTAHGPVRPDGSIDTGPIEQQARLTFTNLRNALQAAGGTLAHVTQVLIYMTDVADMPAIDAVYREFFEAPYPNRSSMGISALVVPGMKLEIVAYAMLP</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="65" xmlns="http://uniprot.org/uniprot">
    <accession>A9BYU5</accession>
    <name>A9BYU5_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Glyoxalase/bleomycin resistance protein/dioxygenase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_2200</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX34840.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012204123.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_2200"/>
    <dbReference type="PRIDE" id="A9BYU5"/>
    <dbReference type="EnsemblBacteria" id="ABX34840">
        <property type="protein sequence ID" value="ABX34840"/>
        <property type="gene ID" value="Daci_2200"/>
    </dbReference>
    <dbReference type="GeneID" id="60686594"/>
    <dbReference type="KEGG" id="dac:Daci_2200"/>
    <dbReference type="eggNOG" id="COG0346">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_046006_6_1_4"/>
    <dbReference type="OMA" id="LWPEYHP"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051213">
        <property type="term" value="F:dioxygenase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.10.180.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029068">
        <property type="entry name" value="Glyas_Bleomycin-R_OHBP_Dase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004360">
        <property type="entry name" value="Glyas_Fos-R_dOase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037523">
        <property type="entry name" value="VOC"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00903">
        <property type="entry name" value="Glyoxalase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54593">
        <property type="entry name" value="SSF54593"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51819">
        <property type="entry name" value="VOC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0223">Dioxygenase</keyword>
    <keyword evidence="2" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="VOC" evidence="1">
        <location>
            <begin position="1"/>
            <end position="125"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS51819"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX34840.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="129" mass="14109" checksum="FB0EA29130CBB84F" modified="2008-01-15" version="1">MIDHTGILVSDFERSKDFYARALAPLGYEILMELSAEVTGHTDTAGFGEPPKPDFWISGGTPNQPPIHVAFRVDNRHMVDDFHAAALAAGGRCNGEPGLRPHYHDDYYAAFVLDPDGHNIEAVCHLPPA</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="64" xmlns="http://uniprot.org/uniprot">
    <accession>A9BYU7</accession>
    <name>A9BYU7_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="7">Major facilitator superfamily MFS_1</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ordered locus">Daci_2202</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="8" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX34842.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_2202"/>
    <dbReference type="PRIDE" id="A9BYU7"/>
    <dbReference type="EnsemblBacteria" id="ABX34842">
        <property type="protein sequence ID" value="ABX34842"/>
        <property type="gene ID" value="Daci_2202"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_2202"/>
    <dbReference type="eggNOG" id="COG2807">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_038046_4_0_4"/>
    <dbReference type="OMA" id="CKPRMLE"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0022857">
        <property type="term" value="F:transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.1250.20">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011701">
        <property type="entry name" value="MFS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020846">
        <property type="entry name" value="MFS_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036259">
        <property type="entry name" value="MFS_trans_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07690">
        <property type="entry name" value="MFS_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF103473">
        <property type="entry name" value="SSF103473"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50850">
        <property type="entry name" value="MFS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4 5" id="KW-0472">Membrane</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 5" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="3 5" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="26"/>
            <end position="47"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="67"/>
            <end position="86"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="98"/>
            <end position="116"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="122"/>
            <end position="144"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="156"/>
            <end position="178"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="184"/>
            <end position="202"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="233"/>
            <end position="257"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="269"/>
            <end position="289"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="298"/>
            <end position="316"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="322"/>
            <end position="344"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="356"/>
            <end position="375"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="387"/>
            <end position="407"/>
        </location>
    </feature>
    <feature type="domain" description="MFS" evidence="6">
        <location>
            <begin position="30"/>
            <end position="411"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="PROSITE" id="PS50850"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="ABX34842.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="420" mass="43318" checksum="2F47694035DAFD3D" modified="2008-01-15" version="1">MATPPGPEAMSSIAPARTEAPAAAHAIPTALWLATVVLVTLNLRPFLTAIGPLGPQIQSATGMDLSTLSWLTLLPMALMGVGAWLAPAALRRLGPRRAVIGSLAVIALGCALRVAGSSAATLLATAALCGAGVALVQGVLPGLIKRQSPARMAQMMGLYSAALMGGGALGAQISPLAVQWGLDWRFALALWTAPALLALVLARHALSTLPGPAPMATQASQDTGWLRQRPRTWLLMACFGLINGGYAAMVAWLAPFYQTHGWSPAQSGGLVALLSVAQASAALGLPVLASRHADRRPWLGFTLLCQIIGLAALAWWPDAAPLLNIVILGIGLGGCFALMMVVALDHLPHPTQAGALNALMQGGGFLIAALAPYVIARLHQFTGGFGAGWLAQMAAVLVVCVLVSRLAPQRYAQAMRSPGD</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="67" xmlns="http://uniprot.org/uniprot">
    <accession>A9BYZ6</accession>
    <name>A9BYZ6_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">ATPase associated with various cellular activities AAA_5</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_2251</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX34891.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012204174.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_2251"/>
    <dbReference type="PRIDE" id="A9BYZ6"/>
    <dbReference type="EnsemblBacteria" id="ABX34891">
        <property type="protein sequence ID" value="ABX34891"/>
        <property type="gene ID" value="Daci_2251"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_2251"/>
    <dbReference type="eggNOG" id="COG0714">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_051820_1_0_4"/>
    <dbReference type="OMA" id="ALYEWKY"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016887">
        <property type="term" value="F:ATP hydrolysis activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003593">
        <property type="entry name" value="AAA+_ATPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011704">
        <property type="entry name" value="ATPase_dyneun-rel_AAA"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07728">
        <property type="entry name" value="AAA_5"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00382">
        <property type="entry name" value="AAA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="AAA" evidence="1">
        <location>
            <begin position="38"/>
            <end position="223"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="SMART" id="SM00382"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX34891.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="312" mass="34524" checksum="4C5B6646401E91A4" modified="2008-01-15" version="1">MPSEQAIASIDALAAALQAEGYFADRRLATAVFLALRLQRPLLLEGEPGVGKTALAQALARVLARRLIRLQCYDGMEQREALYEWNYAAQLLHLRAAELASAQPAAAPDQDRLQRAEQEVYQERYLVSRPLLQALQQPEPGAVLLIDEIDRADEPFEAFLLEYLGEYQVSIPELGTVAARVPPVTVLTSNRTRDLHDAVKRRCLYHWLDYPGRERELAIVRALVPGAGQALTAQVASFVGRLRSQPFADAFQRVPGIAESVEWAKALVALDTLVVDPEVVHDTAGILFKQREDVAALTPERLQQLLAPEPAP</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="77" xmlns="http://uniprot.org/uniprot">
    <accession>A9BZ67</accession>
    <name>A9BZ67_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Transcriptional regulator, ArsR family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_2529</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX35167.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012204446.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_2529"/>
    <dbReference type="PRIDE" id="A9BZ67"/>
    <dbReference type="EnsemblBacteria" id="ABX35167">
        <property type="protein sequence ID" value="ABX35167"/>
        <property type="gene ID" value="Daci_2529"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_2529"/>
    <dbReference type="eggNOG" id="COG0640">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_097806_6_1_4"/>
    <dbReference type="OMA" id="IWECLGL"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003700">
        <property type="term" value="F:DNA-binding transcription factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd00090">
        <property type="entry name" value="HTH_ARSR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011991">
        <property type="entry name" value="ArsR-like_HTH"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001845">
        <property type="entry name" value="HTH_ArsR_DNA-bd_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036390">
        <property type="entry name" value="WH_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00778">
        <property type="entry name" value="HTHARSR"/>
    </dbReference>
    <dbReference type="SMART" id="SM00418">
        <property type="entry name" value="HTH_ARSR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46785">
        <property type="entry name" value="SSF46785"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50987">
        <property type="entry name" value="HTH_ARSR_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HTH arsR-type" evidence="1">
        <location>
            <begin position="11"/>
            <end position="105"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS50987"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX35167.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="106" mass="11677" checksum="E352C7438089720D" modified="2008-01-15" version="1">MDSRNDSMDLSDDSVFESAAELFRAMAAPVRLKIISVLWHGEKNVTELLADITTTQPNMSQHLNTLYQAGVLGRRREGVSIYYFIANAQAAQMCRAICAQVAIAQG</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="67" xmlns="http://uniprot.org/uniprot">
    <accession>A9BZB2</accession>
    <name>A9BZB2_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="1">L-carnitine dehydratase/bile acid-inducible protein F</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Daci_2874</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="2" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX35512.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012204722.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_2874"/>
    <dbReference type="PRIDE" id="A9BZB2"/>
    <dbReference type="EnsemblBacteria" id="ABX35512">
        <property type="protein sequence ID" value="ABX35512"/>
        <property type="gene ID" value="Daci_2874"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_2874"/>
    <dbReference type="eggNOG" id="COG1804">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_033975_2_0_4"/>
    <dbReference type="OMA" id="ELRNWRL"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003824">
        <property type="term" value="F:catalytic activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.1540.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.10540">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003673">
        <property type="entry name" value="CoA-Trfase_fam_III"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR044855">
        <property type="entry name" value="CoA-Trfase_III_dom3_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023606">
        <property type="entry name" value="CoA-Trfase_III_dom_1_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02515">
        <property type="entry name" value="CoA_transf_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF89796">
        <property type="entry name" value="SSF89796"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ABX35512.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="405" mass="42995" checksum="1E8A97194CD81691" modified="2008-01-15" version="1">MTQQTRLVPTPGALNGVRVVEMGQLIAGPFCGKTLGEFGADVVKIEAPGAGDPLRNWRLIKNGTSVWWQVQSRNKRSVALDLRQQEGQDIARRLIAEADVLVENFRPGTLEGWGMSPEELHALNPGLVILRISGYGQTGPYRDLPGFGVIGEAMGGLRHLTAEPGRVPVRVGVSIGDTLAALHGVIGVMMALYHRKVNGGAGQVIDVALHEAVFNVMESLLPEYSAFGAVREAAGSALPGIAPSNAYPCQDGWVLVAGNGDSIFKRLMATIGRQDLADDPQLADNAGRVARIAEIDAVIGGWTRSQSVQAVMDQLAAARVPAGKVYTAKDIAEDPHYRARDMILSQHTRDGDDIEVPGIVPKLSLTPGTVRTSAPHVGDDTDAVLAEAGLTAQQIALLRSKGVIQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="58" xmlns="http://uniprot.org/uniprot">
    <accession>A9BZV1</accession>
    <name>A9BZV1_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_3371</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX36009.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_3371"/>
    <dbReference type="PRIDE" id="A9BZV1"/>
    <dbReference type="EnsemblBacteria" id="ABX36009">
        <property type="protein sequence ID" value="ABX36009"/>
        <property type="gene ID" value="Daci_3371"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_3371"/>
    <dbReference type="eggNOG" id="COG1801">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_046654_0_0_4"/>
    <dbReference type="OMA" id="SSWSYPG"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.20.20.410">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002763">
        <property type="entry name" value="DUF72"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036520">
        <property type="entry name" value="UPF0759_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30348">
        <property type="entry name" value="PTHR30348"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01904">
        <property type="entry name" value="DUF72"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF117396">
        <property type="entry name" value="SSF117396"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="45"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Pro residues" evidence="1">
        <location>
            <begin position="10"/>
            <end position="27"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX36009.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="374" mass="40344" checksum="E2D5B6B1E6BDBCF6" modified="2008-01-15" version="1">MLQPMQDDLFGAPPSPPPSPPSSAPASPAASAAPGGRKPASRKAVGAVQLAPQALQWQALADRLPQGLRMGVSTWSYPGWEGLIWDGAYDKSVLAKKGLEAYGRHPLMRTVCVDRSFWRPLTASQYLAFAGQVPADFRFVVKCPSVVTDAQVRDEDGKGMSLNPVFLQPDLAVTSFVEPTLEGLGEQLGVLVFQLSPMTWGLLSRPTELLARLQAMLDAVRAALAAHPLGAQIIVAVEVRDPELLTPELADTLLAAGATFCLGLHGKMPPIEEQLVFLRRLWPSPLVCRWNLNREFGAYGYPDAQTKHDPFNEIRTPDVHTRAILAKTIDGITSRGLPAFVTVSNDAEGCAPRSIALLAEAVVQAQAARIQRLP</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="53" xmlns="http://uniprot.org/uniprot">
    <accession>A9BZZ2</accession>
    <name>A9BZZ2_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Polyhydroxyalkanoate depolymerase, intracellular</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Daci_3620</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="4" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX36254.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012205454.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_3620"/>
    <dbReference type="PRIDE" id="A9BZZ2"/>
    <dbReference type="EnsemblBacteria" id="ABX36254">
        <property type="protein sequence ID" value="ABX36254"/>
        <property type="gene ID" value="Daci_3620"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_3620"/>
    <dbReference type="eggNOG" id="COG4553">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_017495_0_0_4"/>
    <dbReference type="OMA" id="FYLQTVE"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.1820">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029058">
        <property type="entry name" value="AB_hydrolase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009656">
        <property type="entry name" value="PHB_depo_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010915">
        <property type="entry name" value="PHB_depoly_PhaZ"/>
    </dbReference>
    <dbReference type="Pfam" id="PF06850">
        <property type="entry name" value="PHB_depo_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF020818">
        <property type="entry name" value="PHB_depoly_PhaZ"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53474">
        <property type="entry name" value="SSF53474"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01849">
        <property type="entry name" value="PHB_depoly_PhaZ"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="PHB_depo_C" evidence="2">
        <location>
            <begin position="213"/>
            <end position="419"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="420"/>
            <end position="457"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="421"/>
            <end position="442"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF06850"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ABX36254.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="457" mass="51278" checksum="978B3523160E5B61" modified="2008-01-15" version="1">MLYQLYEIQRAMVEPFADFAQAAAKLYSNPHSLLSQGPMSQRMAAGFDLFYRLGKDYEKPEFNLHSVDVGGVDVTIRERVEVDKPFCELRRFKRFSDDTDTLQTMLSQPVVLIVAPLSGHYATLLRDTVQSMLGDHKVYITDWKNARLVPLADGEFHLDDYVNYVQEFIRYLQGKYGQCHVVSVCQPTVPVLAAVSLMASRGETPPLSMTMMGGPIDARRSPTSVNNLAQNRSFEWFENNVIYRVPEGYPGVGRRVYPGFLQYSGFVAMNPDRHAKSHYDYFKDLIKGDDASAEHHRKFYDEYNAVLDMDADYYLETIATVFQDYKLVHGTWEVRSPEGQAELVRPQDIKGSALLTVEGELDDISGSGQTRAAHDLCTGIAAEQRKHLEVPGAGHYGIFSGRRWREIVYPQVREFISAHQPESATAASAAGHTSSLSDDAPSATEQPRKRGAKVQAG</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="32" xmlns="http://uniprot.org/uniprot">
    <accession>A9C059</accession>
    <name>A9C059_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_3689</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX36321.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_3689"/>
    <dbReference type="PRIDE" id="A9C059"/>
    <dbReference type="EnsemblBacteria" id="ABX36321">
        <property type="protein sequence ID" value="ABX36321"/>
        <property type="gene ID" value="Daci_3689"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_3689"/>
    <dbReference type="HOGENOM" id="CLU_442627_0_0_4"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="6"/>
            <end position="26"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="38"/>
            <end position="59"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="65"/>
            <end position="82"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="94"/>
            <end position="112"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="172"/>
            <end position="190"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="202"/>
            <end position="222"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="270"/>
            <end position="287"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="293"/>
            <end position="314"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="344"/>
            <end position="364"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="370"/>
            <end position="386"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="430"/>
            <end position="453"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX36321.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="617" mass="67396" checksum="95496F378098496B" modified="2008-01-15" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="84" xmlns="http://uniprot.org/uniprot">
    <accession>A9C097</accession>
    <name>A9C097_DELAS</name>
    <protein>
        <recommendedName>
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        </recommendedName>
        <alternativeName>
            <fullName evidence="6">23S rRNA (guanosine2251 2'-O)-methyltransferase</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="6">23S rRNA Gm2251 2'-O-methyltransferase</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="6" type="primary">rlmB</name>
        <name evidence="8" type="ordered locus">Daci_4032</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
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                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="9" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="6">Specifically methylates the ribose of guanosine 2251 in 23S rRNA.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="6">
            <text>guanosine(2251) in 23S rRNA + S-adenosyl-L-methionine = 2'-O-methylguanosine(2251) in 23S rRNA + H(+) + S-adenosyl-L-homocysteine</text>
            <dbReference type="Rhea" id="RHEA:24140"/>
            <dbReference type="Rhea" id="RHEA-COMP:10239"/>
            <dbReference type="Rhea" id="RHEA-COMP:10241"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:57856"/>
            <dbReference type="ChEBI" id="CHEBI:59789"/>
            <dbReference type="ChEBI" id="CHEBI:74269"/>
            <dbReference type="ChEBI" id="CHEBI:74445"/>
            <dbReference type="EC" id="2.1.1.185"/>
        </reaction>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="6">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="6">Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family. RlmB subfamily.</text>
    </comment>
    <dbReference type="EC" id="2.1.1.185" evidence="6"/>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX36663.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012205857.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_4032"/>
    <dbReference type="PRIDE" id="A9C097"/>
    <dbReference type="EnsemblBacteria" id="ABX36663">
        <property type="protein sequence ID" value="ABX36663"/>
        <property type="gene ID" value="Daci_4032"/>
    </dbReference>
    <dbReference type="GeneID" id="60688353"/>
    <dbReference type="KEGG" id="dac:Daci_4032"/>
    <dbReference type="eggNOG" id="COG0566">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_021322_0_1_4"/>
    <dbReference type="OMA" id="QVPPYEY"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003723">
        <property type="term" value="F:RNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0070039">
        <property type="term" value="F:rRNA (guanosine-2'-O-)-methyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.1330.30">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.1280.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01887">
        <property type="entry name" value="23SrRNA_methyltr_B"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR024915">
        <property type="entry name" value="23S_rRNA_MeTrfase_RlmB"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029028">
        <property type="entry name" value="Alpha/beta_knot_MTases"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029064">
        <property type="entry name" value="L30e-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004441">
        <property type="entry name" value="rRNA_MeTrfase_TrmH"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001537">
        <property type="entry name" value="SpoU_MeTrfase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013123">
        <property type="entry name" value="SpoU_subst-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029026">
        <property type="entry name" value="tRNA_m1G_MTases_N"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46429">
        <property type="entry name" value="PTHR46429"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00588">
        <property type="entry name" value="SpoU_methylase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08032">
        <property type="entry name" value="SpoU_sub_bind"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00967">
        <property type="entry name" value="SpoU_sub_bind"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55315">
        <property type="entry name" value="SSF55315"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF75217">
        <property type="entry name" value="SSF75217"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00186">
        <property type="entry name" value="rRNA_methyl_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="1 6" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="3 6 8" id="KW-0489">Methyltransferase</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 6" id="KW-0698">rRNA processing</keyword>
    <keyword evidence="5 6" id="KW-0949">S-adenosyl-L-methionine</keyword>
    <keyword evidence="4 6 8" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="SpoU_sub_bind" evidence="7">
        <location>
            <begin position="6"/>
            <end position="82"/>
        </location>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <position position="201"/>
        </location>
        <ligand>
            <name>S-adenosyl-L-methionine</name>
            <dbReference type="ChEBI" id="CHEBI:59789"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <position position="221"/>
        </location>
        <ligand>
            <name>S-adenosyl-L-methionine</name>
            <dbReference type="ChEBI" id="CHEBI:59789"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <position position="230"/>
        </location>
        <ligand>
            <name>S-adenosyl-L-methionine</name>
            <dbReference type="ChEBI" id="CHEBI:59789"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022490"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022552"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022603"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022691"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01887"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="SMART" id="SM00967"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="ABX36663.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="263" mass="27760" checksum="62B721C200309D40" modified="2008-01-15" version="1">MSSPKVLFGFHAVGVRMKTAPQSIIEVYYEATRRDARMRQFLDRAKSAGVRLIEADGERLAKLAGSHGHQGVAARVEAVAQVHSLDELLEQLEADGISKPLLLVLDGVTDPHNLGACLRVADGAGAHAVIAPKDHAVGVNATVAKVASGAAETVPYFMVTNLARTLNELKERDIWIIGTSDDAPKTLYEVDLTGPTALVLGAEGDGMRQLTRKTCDELIGIPMMGAVSSLNVSVASGVCLYEALRQRGQGTTPAVSAAPADQI</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="57" xmlns="http://uniprot.org/uniprot">
    <accession>A9C0D0</accession>
    <name>A9C0D0_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="7">Cytochrome oxidase assembly</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ordered locus">Daci_4065</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="8" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX36696.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_4065"/>
    <dbReference type="PRIDE" id="A9C0D0"/>
    <dbReference type="EnsemblBacteria" id="ABX36696">
        <property type="protein sequence ID" value="ABX36696"/>
        <property type="gene ID" value="Daci_4065"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_4065"/>
    <dbReference type="eggNOG" id="COG1612">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_041525_0_0_4"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016653">
        <property type="term" value="F:oxidoreductase activity, acting on NAD(P)H, heme protein as acceptor"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006784">
        <property type="term" value="P:heme A biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003780">
        <property type="entry name" value="COX15/CtaA_fam"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02628">
        <property type="entry name" value="COX15-CtaA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-0350">Heme biosynthesis</keyword>
    <keyword evidence="5 6" id="KW-0472">Membrane</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 6" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="3 6" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="119"/>
            <end position="138"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="150"/>
            <end position="170"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="224"/>
            <end position="241"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="270"/>
            <end position="288"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="294"/>
            <end position="318"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="338"/>
            <end position="357"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="411"/>
            <end position="431"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="443"/>
            <end position="461"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="467"/>
            <end position="487"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023133"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="ABX36696.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="506" mass="53341" checksum="51D0A1D0D21DA1E2" modified="2008-01-15" version="1">MRGRLSGSQPSRIVSYQRHAALKVAATGPAWRALCMGRGPAAGIWVHVLILCRPGLRSNLAHGAEPSRQIALIYEDLLSPTGCACGIAFRLARGPCRVVHAALRRAGVSEQALYDLAPVLELMLLGLLLALGPLAWVWLRNRSGGSLKRLQALSVLTLFLTFDLVLFGAFTRLTDSGLGCPDWPGCYGSASPMGARAQIAEAQAAMPTGPVTHGKAWIEMVHRYLATTVGVLIIAMTIMAWRRARRLGRAGGAGAGRTGAEGTGGALSPWWPTLALFWVCLQGAFGAWTVTMKLFPAIVTLHLLGGTGLLALLCVPAVGLSRAASQQGAAVISPALRAGLWLGLALLVLQVALGGWVSTNYAVLACSSFPTCQGSWWPAMDFSQALQIWRPLGLLQDGSNISFAGLTAIHYLHRLAAYVVVAALAGLWWRLGEVPALASQRRVLGAFLVLQVLTGLSNVVLDWPLVAAVLHTGGAAALVTVIVWCLAASRPGALRDGLPVARGEIA</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-05-25" version="46" xmlns="http://uniprot.org/uniprot">
    <accession>A9C110</accession>
    <name>A9C110_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">CbiG_C domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_5845</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX38473.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012207642.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_5845"/>
    <dbReference type="EnsemblBacteria" id="ABX38473">
        <property type="protein sequence ID" value="ABX38473"/>
        <property type="gene ID" value="Daci_5845"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_5845"/>
    <dbReference type="HOGENOM" id="CLU_1640998_0_0_4"/>
    <dbReference type="OMA" id="NCCLAHA"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009236">
        <property type="term" value="P:cobalamin biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.420.180">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002750">
        <property type="entry name" value="CobE/GbiG_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036518">
        <property type="entry name" value="CobE/GbiG_C_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01890">
        <property type="entry name" value="CbiG_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF159664">
        <property type="entry name" value="SSF159664"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="CbiG_C" evidence="1">
        <location>
            <begin position="13"/>
            <end position="141"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF01890"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX38473.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="165" mass="16492" checksum="A5FD20C7A37C3007" modified="2008-01-15" version="1">MNPDEAIPHRCGVLGLGLHTDALPHALQALWQRAQAQLPESADASACAPQPICAVAVLDTKAGHPALAAWMAAIVPTAVLVRVPPGQLPGQPVVTQSPRMLARYGTGSVAEAAALAAAGPHSALSVTRLVADDGSATLALAVGQGGPLNCCLAHASQAKKQGATA</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="79" xmlns="http://uniprot.org/uniprot">
    <accession>A9C127</accession>
    <name>A9C127_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="5">Citrate synthase</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="9" type="ordered locus">Daci_5862</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="9 10" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="10" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>acetyl-CoA + H2O + oxaloacetate = citrate + CoA + H(+)</text>
            <dbReference type="Rhea" id="RHEA:16845"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:16452"/>
            <dbReference type="ChEBI" id="CHEBI:16947"/>
            <dbReference type="ChEBI" id="CHEBI:57287"/>
            <dbReference type="ChEBI" id="CHEBI:57288"/>
            <dbReference type="EC" id="2.3.3.16"/>
        </reaction>
    </comment>
    <comment type="pathway">
        <text evidence="2">Carbohydrate metabolism; tricarboxylic acid cycle; isocitrate from oxaloacetate: step 1/2.</text>
    </comment>
    <comment type="similarity">
        <text evidence="3 5 7">Belongs to the citrate synthase family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX38490.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012207659.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_5862"/>
    <dbReference type="PRIDE" id="A9C127"/>
    <dbReference type="EnsemblBacteria" id="ABX38490">
        <property type="protein sequence ID" value="ABX38490"/>
        <property type="gene ID" value="Daci_5862"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_5862"/>
    <dbReference type="eggNOG" id="COG0372">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_025068_2_1_4"/>
    <dbReference type="OMA" id="LTYCGYD"/>
    <dbReference type="UniPathway" id="UPA00223">
        <property type="reaction ID" value="UER00717"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0036440">
        <property type="term" value="F:citrate synthase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006099">
        <property type="term" value="P:tricarboxylic acid cycle"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniPathway"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.230.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.580.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011278">
        <property type="entry name" value="2-MeCitrate/Citrate_synth_II"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016142">
        <property type="entry name" value="Citrate_synth-like_lrg_a-sub"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016143">
        <property type="entry name" value="Citrate_synth-like_sm_a-sub"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002020">
        <property type="entry name" value="Citrate_synthase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019810">
        <property type="entry name" value="Citrate_synthase_AS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR024176">
        <property type="entry name" value="Citrate_synthase_bac-typ"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036969">
        <property type="entry name" value="Citrate_synthase_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11739">
        <property type="entry name" value="PTHR11739"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00285">
        <property type="entry name" value="Citrate_synt"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF001369">
        <property type="entry name" value="Citrate_synth"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00143">
        <property type="entry name" value="CITRTSNTHASE"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48256">
        <property type="entry name" value="SSF48256"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01800">
        <property type="entry name" value="cit_synth_II"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00480">
        <property type="entry name" value="CITRATE_SYNTHASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="9" id="KW-0012">Acyltransferase</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4 5 7" id="KW-0808">Transferase</keyword>
    <feature type="region of interest" description="Disordered" evidence="8">
        <location>
            <begin position="1"/>
            <end position="21"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="8">
        <location>
            <begin position="1"/>
            <end position="17"/>
        </location>
    </feature>
    <feature type="active site" evidence="6">
        <location>
            <position position="283"/>
        </location>
    </feature>
    <feature type="active site" evidence="6">
        <location>
            <position position="334"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00000308"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00004751"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00010566"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="PIRNR" id="PIRNR001369"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="PIRSR" id="PIRSR001369-1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="RuleBase" id="RU003406"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="ABX38490.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="398" mass="43534" checksum="38FBB528DF16E34D" modified="2008-01-15" version="1">MSTTIIDAPSAPSAPSAPSASAFKPKKSVALSGVTAGNTALCTVGRSGNDLHYRGYDILDIAEVCEFEEIAHLLVHGKLPTRPELQAYKTKLQALRGLPASVRQALEQLPAGAHPMDVMRTGVSALGCVLPEKDDHNLAGARDIADRLMASLGSMLLYWYHWSNSGRRIEVETDDDSIGGHFLHLLHGHRPSEGWVRAMHTSLNLYAEHEFNASTFTARVIAGTGSDMYSSIAGAIGALRGPKHGGANEVAFEIQKRYDTPDEAEADIRRRVDAKEVVIGFGHPVYTVSDPRNVVIKGVAKRLSDEAGTTRMYDIADRLESVMWEVKKMFPNLDWFSAVSYHMMGVPTAMFTPLFVIARTSGWAAHVIEQRQDNKIIRPSANYTGPDDQKFVPLDARA</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="55" xmlns="http://uniprot.org/uniprot">
    <accession>A9C150</accession>
    <name>A9C150_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Daci_5885</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="2" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX38513.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012207682.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_5885"/>
    <dbReference type="PRIDE" id="A9C150"/>
    <dbReference type="EnsemblBacteria" id="ABX38513">
        <property type="protein sequence ID" value="ABX38513"/>
        <property type="gene ID" value="Daci_5885"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_5885"/>
    <dbReference type="eggNOG" id="COG3496">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_065913_1_0_4"/>
    <dbReference type="OMA" id="PFNPMDM"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010775">
        <property type="entry name" value="DUF1365"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33973">
        <property type="entry name" value="PTHR33973"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07103">
        <property type="entry name" value="DUF1365"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ABX38513.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="250" mass="28679" checksum="DFA7D477E04EF2AF" modified="2008-01-15" version="1">MTARPLIGFGHVWHRRLRPVEHAFRYPGYFLMLPLRSLRTQPDAALRRNRRGWLSFHDSDHGEGGCDALAWFEQLLHSEGIADADGEVWLHTFPRVLGYVFKPVSFWYAHRADGSLAAVLAEVNNTFGERHAYLLAGPDLDWGREQVARKQFHVSPFCEVRGEYRFRFERGEDRTLARVDLHDEDGPLLQTSVGGVLHPLGGATVRRAFFGTPLMTLGVVARIHWHALRLWAKRVPFHGKPSEPKRFVTR</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="59" xmlns="http://uniprot.org/uniprot">
    <accession>A9C1C3</accession>
    <name>A9C1C3_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">PEBP family protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_5958</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX38586.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012207755.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_5958"/>
    <dbReference type="PRIDE" id="A9C1C3"/>
    <dbReference type="EnsemblBacteria" id="ABX38586">
        <property type="protein sequence ID" value="ABX38586"/>
        <property type="gene ID" value="Daci_5958"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_5958"/>
    <dbReference type="eggNOG" id="COG1881">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_083918_0_0_4"/>
    <dbReference type="OMA" id="CPPWNDS"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="CDD" id="cd00865">
        <property type="entry name" value="PEBP_bact_arch"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.280.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008914">
        <property type="entry name" value="PEBP"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036610">
        <property type="entry name" value="PEBP-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005247">
        <property type="entry name" value="YbhB_YbcL"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30289">
        <property type="entry name" value="PTHR30289"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01161">
        <property type="entry name" value="PBP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF49777">
        <property type="entry name" value="SSF49777"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="102"/>
            <end position="121"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX38586.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="211" mass="22042" checksum="C956581A4EF02054" modified="2008-01-15" version="1">MQLISQSFQDGQAIPGEFAFAVPDAASHVALSSNRNPHLAWSGAPAGTQSFVVVCHDPDVPSRGDDVNQEGREVPASLPRVDFFHWLLLDIPAATTEIAAGAQSDGVTPRGKSGPAAPGGLRHGINDYTGWFAGDEQMKGDYFGYDGPCPPWNDSIVHHYVFTVYALATPTLAVSGELTGANVRAALQAGQVLGKASITGLYSLNPAVSAA</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="64" xmlns="http://uniprot.org/uniprot">
    <accession>A9C1C9</accession>
    <name>A9C1C9_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="4">Hydroxymethylglutaryl-CoA lyase</fullName>
            <ecNumber evidence="4">4.1.3.4</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="7" type="ordered locus">Daci_5964</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="8" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>(3S)-hydroxy-3-methylglutaryl-CoA = acetoacetate + acetyl-CoA</text>
            <dbReference type="Rhea" id="RHEA:24404"/>
            <dbReference type="ChEBI" id="CHEBI:13705"/>
            <dbReference type="ChEBI" id="CHEBI:43074"/>
            <dbReference type="ChEBI" id="CHEBI:57288"/>
            <dbReference type="EC" id="4.1.3.4"/>
        </reaction>
    </comment>
    <comment type="pathway">
        <text evidence="2">Metabolic intermediate metabolism; (S)-3-hydroxy-3-methylglutaryl-CoA degradation; acetoacetate from (S)-3-hydroxy-3-methylglutaryl-CoA: step 1/1.</text>
    </comment>
    <comment type="similarity">
        <text evidence="3">Belongs to the HMG-CoA lyase family.</text>
    </comment>
    <dbReference type="EC" id="4.1.3.4" evidence="4"/>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX38592.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012207761.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_5964"/>
    <dbReference type="PRIDE" id="A9C1C9"/>
    <dbReference type="EnsemblBacteria" id="ABX38592">
        <property type="protein sequence ID" value="ABX38592"/>
        <property type="gene ID" value="Daci_5964"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_5964"/>
    <dbReference type="eggNOG" id="COG0119">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_022138_3_2_4"/>
    <dbReference type="OMA" id="FGGCPMA"/>
    <dbReference type="UniPathway" id="UPA00896">
        <property type="reaction ID" value="UER00863"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004419">
        <property type="term" value="F:hydroxymethylglutaryl-CoA lyase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016740">
        <property type="term" value="F:transferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.20.20.70">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013785">
        <property type="entry name" value="Aldolase_TIM"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000138">
        <property type="entry name" value="HMG_CoA_lyase_AS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043594">
        <property type="entry name" value="HMGL"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000891">
        <property type="entry name" value="PYR_CT"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR42738">
        <property type="entry name" value="PTHR42738"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00682">
        <property type="entry name" value="HMGL-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01062">
        <property type="entry name" value="HMG_COA_LYASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50991">
        <property type="entry name" value="PYR_CT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="7" id="KW-0670">Pyruvate</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="7" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Pyruvate carboxyltransferase" evidence="6">
        <location>
            <begin position="7"/>
            <end position="278"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001651"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00005143"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00009405"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00012910"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="PROSITE" id="PS50991"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="ABX38592.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="313" mass="33145" checksum="732814BC82AFA933" modified="2008-01-15" version="1">MSIPSRVKLVDVGPRDGLQNEKQPVPAAVKIELVHRLQEAGLKEIEVTSYVSPKWVPQMADNAEVMAGIVRRPGVRYSVLTPNMKGLEAALSAPRELWPDEIVVFGAASEAFSQKNINCSIAESIERFAPVAEAARAQGIHVRGAMSCTVGCPYEGEIAPERVAYLAGLMKGIGVQHVGVADTIGVGTPVKVRKAIEATLQHFAIDDVSGHFHDTYGQAVSNTLAALSLGVWQFDTSVAGLGGCPYAKGATGNVATEDVVYMLQGMGIETGIDLDKLIDAGQFISDHLGRPTQSRVAKALLTKRASASACEAV</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="64" xmlns="http://uniprot.org/uniprot">
    <accession>A9C1H3</accession>
    <name>A9C1H3_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="4">Outer membrane protein assembly factor BamE</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="4" type="primary">bamE</name>
        <name evidence="7" type="ordered locus">Daci_6008</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="8" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="4">Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane.</text>
    </comment>
    <comment type="subunit">
        <text evidence="4">Part of the Bam complex.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="4">Cell outer membrane</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="4">Belongs to the BamE family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX38636.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_6008"/>
    <dbReference type="PRIDE" id="A9C1H3"/>
    <dbReference type="EnsemblBacteria" id="ABX38636">
        <property type="protein sequence ID" value="ABX38636"/>
        <property type="gene ID" value="Daci_6008"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_6008"/>
    <dbReference type="eggNOG" id="COG2913">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_083835_1_1_4"/>
    <dbReference type="OMA" id="DRWEYVF"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009279">
        <property type="term" value="C:cell outer membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043165">
        <property type="term" value="P:Gram-negative-bacterium-type cell outer membrane assembly"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051205">
        <property type="term" value="P:protein insertion into membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.1450.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00925">
        <property type="entry name" value="OM_assembly_BamE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR026592">
        <property type="entry name" value="BamE"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037873">
        <property type="entry name" value="BamE-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007450">
        <property type="entry name" value="Lipoprotein_SmpA/OmlA"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37482">
        <property type="entry name" value="PTHR37482"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04355">
        <property type="entry name" value="SmpA_OmlA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3 4" id="KW-0998">Cell outer membrane</keyword>
    <keyword evidence="2 4" id="KW-0472">Membrane</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1 4" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="4">
        <location>
            <begin position="1"/>
            <end position="33"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5009007255" description="Outer membrane protein assembly factor BamE" evidence="4">
        <location>
            <begin position="34"/>
            <end position="193"/>
        </location>
    </feature>
    <feature type="domain" description="SmpA_OmlA" evidence="6">
        <location>
            <begin position="59"/>
            <end position="128"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="5">
        <location>
            <begin position="158"/>
            <end position="193"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022729"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023237"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00925"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="Pfam" id="PF04355"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="ABX38636.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="193" mass="20917" checksum="78DE70DAB55E200E" modified="2008-01-15" version="1" precursor="true">MIHDHIPMLIPMHVQARCRTSAALMLSIGVALAGCSSLDGAAHRVANVVTPYKVEVVQGNFVSREQVEALQPGMSRQQVRDILGTPLVTSVFHADRWEYVFTIKRPGVDSQVRKLTVFFNGDLFARSEGDEMPTEAEFVASLGSKKKLGKIPPLEASEEQLSKFPAAKPVEEPVAAEPPPAAASYPPLESGAR</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="108" xmlns="http://uniprot.org/uniprot">
    <accession>A9C1V0</accession>
    <name>A9C1V0_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="5 6">Lon protease</fullName>
            <ecNumber evidence="5 6">3.4.21.53</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="5">ATP-dependent protease La</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="5" type="primary">lon</name>
        <name evidence="15" type="ordered locus">Daci_2647</name>
    </gene>
    <organism evidence="15 16">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="15 16" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="16">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="16" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="16">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="5">ATP-dependent serine protease that mediates the selective degradation of mutant and abnormal proteins as well as certain short-lived regulatory proteins. Required for cellular homeostasis and for survival from DNA damage and developmental changes induced by stress. Degrades polypeptides processively to yield small peptide fragments that are 5 to 10 amino acids long. Binds to DNA in a double-stranded, site-specific manner.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="5 6 9">
            <text>Hydrolysis of proteins in presence of ATP.</text>
            <dbReference type="EC" id="3.4.21.53"/>
        </reaction>
    </comment>
    <comment type="subunit">
        <text evidence="5 6">Homohexamer. Organized in a ring with a central cavity.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1 5 6">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="induction">
        <text evidence="5">By heat shock.</text>
    </comment>
    <comment type="similarity">
        <text evidence="5 6 9 10">Belongs to the peptidase S16 family.</text>
    </comment>
    <dbReference type="EC" id="3.4.21.53" evidence="5 6"/>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX35285.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012204531.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_2647"/>
    <dbReference type="MEROPS" id="S16.001"/>
    <dbReference type="PRIDE" id="A9C1V0"/>
    <dbReference type="EnsemblBacteria" id="ABX35285">
        <property type="protein sequence ID" value="ABX35285"/>
        <property type="gene ID" value="Daci_2647"/>
    </dbReference>
    <dbReference type="GeneID" id="60686988"/>
    <dbReference type="KEGG" id="dac:Daci_2647"/>
    <dbReference type="eggNOG" id="COG0466">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_004109_4_3_4"/>
    <dbReference type="OMA" id="GAWQVVD"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016887">
        <property type="term" value="F:ATP hydrolysis activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004176">
        <property type="term" value="F:ATP-dependent peptidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043565">
        <property type="term" value="F:sequence-specific DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004252">
        <property type="term" value="F:serine-type endopeptidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0034605">
        <property type="term" value="P:cellular response to heat"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006515">
        <property type="term" value="P:protein quality control for misfolded or incompletely synthesized proteins"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.30.130.40">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.230.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01973">
        <property type="entry name" value="lon_bact"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003593">
        <property type="entry name" value="AAA+_ATPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003959">
        <property type="entry name" value="ATPase_AAA_core"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027543">
        <property type="entry name" value="Lon_bac"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004815">
        <property type="entry name" value="Lon_bac/euk-typ"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008269">
        <property type="entry name" value="Lon_proteolytic"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027065">
        <property type="entry name" value="Lon_Prtase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003111">
        <property type="entry name" value="Lon_prtase_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR046336">
        <property type="entry name" value="Lon_prtase_N_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008268">
        <property type="entry name" value="Peptidase_S16_AS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015947">
        <property type="entry name" value="PUA-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020568">
        <property type="entry name" value="Ribosomal_S5_D2-typ_fold"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014721">
        <property type="entry name" value="Ribosomal_S5_D2-typ_fold_subgr"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10046">
        <property type="entry name" value="PTHR10046"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00004">
        <property type="entry name" value="AAA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF05362">
        <property type="entry name" value="Lon_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02190">
        <property type="entry name" value="LON_substr_bdg"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF001174">
        <property type="entry name" value="Lon_proteas"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00382">
        <property type="entry name" value="AAA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00464">
        <property type="entry name" value="LON"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54211">
        <property type="entry name" value="SSF54211"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF88697">
        <property type="entry name" value="SSF88697"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00763">
        <property type="entry name" value="lon"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51787">
        <property type="entry name" value="LON_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51786">
        <property type="entry name" value="LON_PROTEOLYTIC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01046">
        <property type="entry name" value="LON_SER"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="evidence at transcript level"/>
    <keyword evidence="5 6 8" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="11" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="5 6" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="5 6 9" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="5 6 8" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="2 5 6" id="KW-0645">Protease</keyword>
    <keyword evidence="16" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 5 6" id="KW-0720">Serine protease</keyword>
    <keyword evidence="4 5" id="KW-0346">Stress response</keyword>
    <feature type="domain" description="Lon N-terminal" evidence="14">
        <location>
            <begin position="14"/>
            <end position="207"/>
        </location>
    </feature>
    <feature type="domain" description="Lon proteolytic" evidence="13">
        <location>
            <begin position="596"/>
            <end position="777"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="12">
        <location>
            <begin position="781"/>
            <end position="804"/>
        </location>
    </feature>
    <feature type="coiled-coil region" evidence="11">
        <location>
            <begin position="184"/>
            <end position="215"/>
        </location>
    </feature>
    <feature type="active site" evidence="5 7 9">
        <location>
            <position position="683"/>
        </location>
    </feature>
    <feature type="active site" evidence="5 7 9">
        <location>
            <position position="726"/>
        </location>
    </feature>
    <feature type="binding site" evidence="5 8">
        <location>
            <begin position="360"/>
            <end position="367"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004496"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022670"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022825"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023016"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01973"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="PIRNR" id="PIRNR001174"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="PIRSR" id="PIRSR001174-1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="PIRSR" id="PIRSR001174-2"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU01122"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="RuleBase" id="RU000591"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="12">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="13">
        <source>
            <dbReference type="PROSITE" id="PS51786"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="14">
        <source>
            <dbReference type="PROSITE" id="PS51787"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="15">
        <source>
            <dbReference type="EMBL" id="ABX35285.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="16">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="804" mass="88645" checksum="9F3C085F9102B92E" modified="2008-01-15" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="77" xmlns="http://uniprot.org/uniprot">
    <accession>A9C225</accession>
    <name>A9C225_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Transcriptional regulator, LysR family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Daci_3023</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="4" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the LysR transcriptional regulatory family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX35661.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_3023"/>
    <dbReference type="PRIDE" id="A9C225"/>
    <dbReference type="EnsemblBacteria" id="ABX35661">
        <property type="protein sequence ID" value="ABX35661"/>
        <property type="gene ID" value="Daci_3023"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_3023"/>
    <dbReference type="eggNOG" id="COG0583">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_039613_6_4_4"/>
    <dbReference type="OMA" id="QLTKPAQ"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003700">
        <property type="term" value="F:DNA-binding transcription factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005119">
        <property type="entry name" value="LysR_subst-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000847">
        <property type="entry name" value="Tscrpt_reg_HTH_LysR"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036390">
        <property type="entry name" value="WH_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00126">
        <property type="entry name" value="HTH_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03466">
        <property type="entry name" value="LysR_substrate"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46785">
        <property type="entry name" value="SSF46785"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50931">
        <property type="entry name" value="HTH_LYSR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HTH lysR-type" evidence="2">
        <location>
            <begin position="40"/>
            <end position="98"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00009437"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS50931"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ABX35661.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="351" mass="38356" checksum="51C01AEB1F708FE3" modified="2008-01-15" version="1">MQEPCGKGLLQRGPPLGQLRGWSPWPPSPLHLLHTVLTRLTFRQLEYCVAAGEFGSIAEAANRIHVSPSSISSAITQVEAELQVPLFVRHHAQGLSVTPAGAEVLREIRGLLDQAMALYDVASSAQSQVRGPVRVGCFTTLAAMVAPELCQGFARAHPKATVTQIEDHQEGLIHKLRTAQIDVAITYDLLVAESDICFEPLAQLPPMVIVSELNPLANHRSTTLEALAQLPMVLLDLPLSREYFMSLFREAGVSPLIAARSASPDVVRSLVANDVGYSLVNVRPRNSHALDGKKIVNLHLNGNHRPMKLGLAWAREQKPRHVVEAFMHRCRSFISNEYIPGMTAPGRGEAN</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-01-19" version="72" xmlns="http://uniprot.org/uniprot">
    <accession>A9C254</accession>
    <name>A9C254_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Serine--glyoxylate transaminase</fullName>
            <ecNumber evidence="5">2.6.1.45</ecNumber>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ordered locus">Daci_3052</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="6" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="1 3">
            <name>pyridoxal 5'-phosphate</name>
            <dbReference type="ChEBI" id="CHEBI:597326"/>
        </cofactor>
    </comment>
    <dbReference type="EC" id="2.6.1.45" evidence="5"/>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX35690.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012204896.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_3052"/>
    <dbReference type="EnsemblBacteria" id="ABX35690">
        <property type="protein sequence ID" value="ABX35690"/>
        <property type="gene ID" value="Daci_3052"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_3052"/>
    <dbReference type="eggNOG" id="COG0075">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_027686_1_0_4"/>
    <dbReference type="OMA" id="KNWLPIM"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0050281">
        <property type="term" value="F:serine-glyoxylate transaminase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.640.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.1150.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000192">
        <property type="entry name" value="Aminotrans_V_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015424">
        <property type="entry name" value="PyrdxlP-dep_Trfase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015421">
        <property type="entry name" value="PyrdxlP-dep_Trfase_major"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015422">
        <property type="entry name" value="PyrdxlP-dep_Trfase_small"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR024169">
        <property type="entry name" value="SP_NH2Trfase/AEP_transaminase"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00266">
        <property type="entry name" value="Aminotran_5"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF000524">
        <property type="entry name" value="SPT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53383">
        <property type="entry name" value="SSF53383"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="5" id="KW-0032">Aminotransferase</keyword>
    <keyword evidence="2 3" id="KW-0663">Pyridoxal phosphate</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="5" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Aminotran_5" evidence="4">
        <location>
            <begin position="36"/>
            <end position="302"/>
        </location>
    </feature>
    <feature type="modified residue" description="N6-(pyridoxal phosphate)lysine" evidence="3">
        <location>
            <position position="213"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001933"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022898"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="PIRSR" id="PIRSR000524-50"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="Pfam" id="PF00266"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="ABX35690.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="413" mass="44495" checksum="A1E4ADFEDC0EBA42" modified="2008-01-15" version="1">MLTLDNHPTGRHFLQIPGPSPVPDRILRAMSLPTIDHRGPEFGQLGLKVLAGIQQVFKTRHPVVIYPASGTGAWEAALINTLSPGDHVLMFETGHFASLWQKMATRLGLSTEFLSYGGSDEHLPQAPGWRHGVQAGLIEARLRKDTERRIRAVCVVHNETSTGVTSDIAAVRRAIDAAGHPALLLVDTISGLASADYRHDEWGVDVTISGSQKGLMLPPGISFNALSPRALEAAKSAKLPKSFWAWDEIVEMNQTGYWPYTPNTNLLYALSESLDMLLAEGLDTVFARHQRWAAGVRAAVQAWGLPIQCADPQVYSPVLTGVITPEGVDADALRRLIHTRFDLSLGAGLGKLKGRMFRMGHLGDSNDLTLLAMVAGVEMGLKLSGIRLAGSGVQASMDYFAAHAAAGALRKAA</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="54" xmlns="http://uniprot.org/uniprot">
    <accession>A9C299</accession>
    <name>A9C299_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Helicase-like protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_3405</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX36043.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_3405"/>
    <dbReference type="PRIDE" id="A9C299"/>
    <dbReference type="EnsemblBacteria" id="ABX36043">
        <property type="protein sequence ID" value="ABX36043"/>
        <property type="gene ID" value="Daci_3405"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_3405"/>
    <dbReference type="eggNOG" id="COG0553">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_029251_0_0_4"/>
    <dbReference type="OMA" id="WFNSIQF"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004386">
        <property type="term" value="F:helicase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014001">
        <property type="entry name" value="Helicase_ATP-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="SMART" id="SM00487">
        <property type="entry name" value="DEXDc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="2" id="KW-0347">Helicase</keyword>
    <keyword evidence="2" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="2" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Helicase ATP-binding" evidence="1">
        <location>
            <begin position="3"/>
            <end position="213"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="SMART" id="SM00487"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX36043.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="477" mass="53249" checksum="7B8F9302D87B9C4F" modified="2008-01-15" version="1">MTKRYTPRPWQPQMTEHMLRVPRSNVFAGMGSGKTAATLEALAILLLFGVVRRILIIGPKRVARDTWRDAICSFGQSFGWMTIAVAIGDEKKRRAAIQAGCHITAINFDNLDWLVDNYGPDWPFDMVVVDESTKLRGLRVSIQAHKKSGKKWLAGQGASRAKALARVAHTRVQRWVNLTGTPALAGLEALWGPTWFLDAGHRLGNSFTAFSHRWFRSVPGSDPQKQVIEPMPFAEEQIRNAIRDITLVVDIKDYVDVGAPQENVIYVDLPAPAQRQYDEMARELATEIDGQVIEAFSAGTKSQKLLQIASGAAYTDDQGAWALVHDEKIEALKSVVEEALGMPLLVFYHFKSDLARIRKAFPKARTLDDKGAKEDFEAGRLQMLVVHPASAGHGVDGLQHGTCQCVFFSTNWSAENDAQAIERIGPTRQMQSGYDRPVTVHRLVARDTVEESAMYRLRSRVSVDEALRQGLKKYRKT</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="58" xmlns="http://uniprot.org/uniprot">
    <accession>A9C2G6</accession>
    <name>A9C2G6_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Diguanylate cyclase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Daci_3474</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="4" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX36110.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012205310.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_3474"/>
    <dbReference type="PRIDE" id="A9C2G6"/>
    <dbReference type="EnsemblBacteria" id="ABX36110">
        <property type="protein sequence ID" value="ABX36110"/>
        <property type="gene ID" value="Daci_3474"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_3474"/>
    <dbReference type="eggNOG" id="COG3706">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_000445_11_1_4"/>
    <dbReference type="OMA" id="GWLLIYR"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd01949">
        <property type="entry name" value="GGDEF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.70.270">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000160">
        <property type="entry name" value="GGDEF_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029787">
        <property type="entry name" value="Nucleotide_cyclase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043128">
        <property type="entry name" value="Rev_trsase/Diguanyl_cyclase"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00990">
        <property type="entry name" value="GGDEF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00267">
        <property type="entry name" value="GGDEF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55073">
        <property type="entry name" value="SSF55073"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00254">
        <property type="entry name" value="GGDEF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50887">
        <property type="entry name" value="GGDEF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="12"/>
            <end position="32"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="39"/>
            <end position="58"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="64"/>
            <end position="83"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="95"/>
            <end position="113"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="155"/>
            <end position="178"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="190"/>
            <end position="212"/>
        </location>
    </feature>
    <feature type="domain" description="GGDEF" evidence="2">
        <location>
            <begin position="253"/>
            <end position="384"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS50887"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ABX36110.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="393" mass="44001" checksum="8D463391FB8AFA4D" modified="2008-01-15" version="1">MDVSLDTDRLYVLIAPLSILLLSCTLAVCWLVQRRQRYLLWIAGGYALVSLALAWQSLAPREELHHWAVFTGAMYLFGTWCFARCMAGRYGVSAHPLLGLLIGAVVLAALYYYSRVQVDLWVRVHWLNTGLGLLQMLPAPAMLRRRPPQDWLERMLYWSYVVFAGYTAARPLLVLALGSTDLNEIARSTYWLVTLVSTLSFALLFTLMLLACTVRDVFTALREERNHDSLTNLLNRRAFQEAAELRLADPHMAPISVLIGDIDHFKRINDSWGHDCGDRVLQAVAQTLQQHVRNDDLVCRFGGEEFVLLLMRTTPQEAERVAQRIRAQLSADGYVLAAGQRVTISFGIAPVAANTALTDALTRADGLLYAAKQAGRDRVHVATDPGRRVPQAV</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="86" xmlns="http://uniprot.org/uniprot">
    <accession>A9C2P3</accession>
    <name>A9C2P3_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="7">Transcriptional regulator, LacI family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ordered locus">Daci_3760</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="8" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX36392.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012205586.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_3760"/>
    <dbReference type="PRIDE" id="A9C2P3"/>
    <dbReference type="EnsemblBacteria" id="ABX36392">
        <property type="protein sequence ID" value="ABX36392"/>
        <property type="gene ID" value="Daci_3760"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_3760"/>
    <dbReference type="eggNOG" id="COG1609">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_037628_6_3_4"/>
    <dbReference type="OMA" id="MVFVDRW"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006355">
        <property type="term" value="P:regulation of transcription, DNA-templated"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd01392">
        <property type="entry name" value="HTH_LacI"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.260.40">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001387">
        <property type="entry name" value="Cro/C1-type_HTH"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000843">
        <property type="entry name" value="HTH_LacI"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR046335">
        <property type="entry name" value="LacI/GalR-like_sensor"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010982">
        <property type="entry name" value="Lambda_DNA-bd_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR028082">
        <property type="entry name" value="Peripla_BP_I"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00356">
        <property type="entry name" value="LacI"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13377">
        <property type="entry name" value="Peripla_BP_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00354">
        <property type="entry name" value="HTH_LACI"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47413">
        <property type="entry name" value="SSF47413"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53822">
        <property type="entry name" value="SSF53822"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50943">
        <property type="entry name" value="HTH_CROC1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50932">
        <property type="entry name" value="HTH_LACI_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0804">Transcription</keyword>
    <keyword evidence="1" id="KW-0805">Transcription regulation</keyword>
    <feature type="domain" description="HTH lacI-type" evidence="5">
        <location>
            <begin position="37"/>
            <end position="91"/>
        </location>
    </feature>
    <feature type="domain" description="HTH cro/C1-type" evidence="6">
        <location>
            <begin position="37"/>
            <end position="71"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="4">
        <location>
            <begin position="1"/>
            <end position="33"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023015"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023163"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="PROSITE" id="PS50932"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="PROSITE" id="PS50943"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="ABX36392.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="364" mass="38806" checksum="EF9F5C127E6914D0" modified="2008-01-15" version="1">MARQIPPASPESPSADVSGPALPATGRARSSRASGRITLSDVAQAAGVSPMTVSRALRGERRVDPALVEKIRTAAAQMGYVPDPAARALASQKSAQVLVLVPMLSNTLFVDLIEAVHKVLFSAGYHALIGVTHYDRAEEEQLLRTYLPMRPAGLLLTGFDRSPAARELVQASKVPCVHLMELGGEPGAPSVGFSQAEAGAAITRHLMERGHRRIAFCAGQLDARVMQRAAGYRHALQAAGLHDPALELLWPRPTSMALGAELLDAALRLDPAVDALFFCNDDIAQGALLEALRRGIRVPEQIAIAGFNDLPGSDQMVPPLTTIRTPRGHIGTEGARMLLQLMRGEAVEPPSVDLGYELVVRQSS</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="33" xmlns="http://uniprot.org/uniprot">
    <accession>A9C2T2</accession>
    <name>A9C2T2_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Daci_4105</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="2" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX36736.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_4105"/>
    <dbReference type="PRIDE" id="A9C2T2"/>
    <dbReference type="EnsemblBacteria" id="ABX36736">
        <property type="protein sequence ID" value="ABX36736"/>
        <property type="gene ID" value="Daci_4105"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_4105"/>
    <dbReference type="HOGENOM" id="CLU_2552652_0_0_4"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ABX36736.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="82" mass="9183" checksum="F89EA622BC031A8E" modified="2008-01-15" version="1">MTPTGIEAKVCEDIARRQQFGLHKYGTTVAENPLELRQWLQHAYEEALDQAIYLRRAMAELDAITGHDELADMVRAGKGAQA</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="37" xmlns="http://uniprot.org/uniprot">
    <accession>A9C2T4</accession>
    <name>A9C2T4_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Daci_4107</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="2" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX36738.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012205929.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_4107"/>
    <dbReference type="PRIDE" id="A9C2T4"/>
    <dbReference type="EnsemblBacteria" id="ABX36738">
        <property type="protein sequence ID" value="ABX36738"/>
        <property type="gene ID" value="Daci_4107"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_4107"/>
    <dbReference type="eggNOG" id="ENOG502ZFDK">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_1575901_0_0_4"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ABX36738.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="169" mass="18227" checksum="D6668273F6F83A41" modified="2008-01-15" version="1">MSKTETQSEALRLALLLRMQRDSASGVITHNAASRAAAELEWLDAENKALRGLAATCYAGLGAECNLPENWLDALNAAANGQAFDTEGLLPFSATEARDETIRQLEAQVKGAALSERERICAAIKAEDDYCVTQGDYMLDSDDCIKVARGEWERPVYEVEAAAKTGDAA</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="60" xmlns="http://uniprot.org/uniprot">
    <accession>A9C325</accession>
    <name>A9C325_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Daci_4198</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="2" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX36829.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_4198"/>
    <dbReference type="PRIDE" id="A9C325"/>
    <dbReference type="EnsemblBacteria" id="ABX36829">
        <property type="protein sequence ID" value="ABX36829"/>
        <property type="gene ID" value="Daci_4198"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_4198"/>
    <dbReference type="eggNOG" id="COG4006">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_751788_0_0_4"/>
    <dbReference type="OMA" id="TKLMFAG"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003676">
        <property type="term" value="F:nucleic acid binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.1350.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015093">
        <property type="entry name" value="DUF1887"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011335">
        <property type="entry name" value="Restrct_endonuc-II-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011856">
        <property type="entry name" value="tRNA_endonuc-like_dom_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF09002">
        <property type="entry name" value="DUF1887"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52980">
        <property type="entry name" value="SSF52980"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ABX36829.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="360" mass="41095" checksum="03D95F0B56E8D901" modified="2008-01-15" version="1">MPALLSIRQFESAHHIFVNSKDFPAACMQTFIGSRDLHELTVDPWDDRAVHEQITELAKQFPEKTRIGINLTGGTKLMFAGALSAARELGAVPFYFDSKNRRVIFIDSVRREKIRQIDSIETFLHLNSDGLEIAGSSFMKDISPSRQLLTETLWLHRDKVRRFYRELTDYNNAFRPFEICRDGFNFKLDDMEAVSVQGYGLDLRFEKWPDFAKYLSGGWFEEFVYLQCKPYEDAGVIQDLRINVKLNLNLEESKGYSSFGVEYNELDITFTDGYSLYVVECKAGNVTQEQIMKLQNLVRFYGGIEGRGIVACCVPPNTESAKKKIKDARLMLWSGASLSEQITAMMNSITERAEASEATP</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="49" xmlns="http://uniprot.org/uniprot">
    <accession>A9C331</accession>
    <name>A9C331_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">SMI1_KNR4 domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_4513</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX37142.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_4513"/>
    <dbReference type="PRIDE" id="A9C331"/>
    <dbReference type="EnsemblBacteria" id="ABX37142">
        <property type="protein sequence ID" value="ABX37142"/>
        <property type="gene ID" value="Daci_4513"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_4513"/>
    <dbReference type="eggNOG" id="ENOG5033AZG">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_135028_1_0_4"/>
    <dbReference type="OMA" id="GYMFWFF"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.1580.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018958">
        <property type="entry name" value="Knr4/Smi1-like_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037883">
        <property type="entry name" value="Knr4/Smi1-like_sf"/>
    </dbReference>
    <dbReference type="SMART" id="SM00860">
        <property type="entry name" value="SMI1_KNR4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF160631">
        <property type="entry name" value="SSF160631"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="SMI1_KNR4" evidence="1">
        <location>
            <begin position="14"/>
            <end position="131"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="SMART" id="SM00860"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX37142.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="142" mass="16091" checksum="9AB5C92E9B8E86BB" modified="2008-01-15" version="1">MIDKKICTKEEMEGCSLENVEMLEKNASLSLPLQYREFLLGIGRGAGILFQGTDIFFPSIIGLKTDAVNLLKENGENFTLSSVDFVFSMHQGYEFCYFNTSEGDDPPVYQYIEGSGSPMIVWKSFSDFLMDSIDIYSRSRNM</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="88" xmlns="http://uniprot.org/uniprot">
    <accession>A9BLF0</accession>
    <name>A9BLF0_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="5">Sensor protein QseC</fullName>
            <ecNumber evidence="4">2.7.13.3</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="12" type="ordered locus">Daci_3803</name>
    </gene>
    <organism evidence="12 13">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="12 13" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="13">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="13" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="13">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>ATP + protein L-histidine = ADP + protein N-phospho-L-histidine.</text>
            <dbReference type="EC" id="2.7.13.3"/>
        </reaction>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="3">Cell inner membrane</location>
            <topology evidence="3">Multi-pass membrane protein</topology>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="2">Membrane</location>
            <topology evidence="2">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <dbReference type="EC" id="2.7.13.3" evidence="4"/>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX36435.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012205629.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_3803"/>
    <dbReference type="PRIDE" id="A9BLF0"/>
    <dbReference type="EnsemblBacteria" id="ABX36435">
        <property type="protein sequence ID" value="ABX36435"/>
        <property type="gene ID" value="Daci_3803"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_3803"/>
    <dbReference type="eggNOG" id="COG2205">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_000445_89_6_4"/>
    <dbReference type="OMA" id="HAPAPEF"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000155">
        <property type="term" value="F:phosphorelay sensor kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd00082">
        <property type="entry name" value="HisKA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.565.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013727">
        <property type="entry name" value="2CSK_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003594">
        <property type="entry name" value="HATPase_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036890">
        <property type="entry name" value="HATPase_C_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005467">
        <property type="entry name" value="His_kinase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003661">
        <property type="entry name" value="HisK_dim/P"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036097">
        <property type="entry name" value="HisK_dim/P_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004358">
        <property type="entry name" value="Sig_transdc_His_kin-like_C"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08521">
        <property type="entry name" value="2CSK_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02518">
        <property type="entry name" value="HATPase_c"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00344">
        <property type="entry name" value="BCTRLSENSOR"/>
    </dbReference>
    <dbReference type="SMART" id="SM00387">
        <property type="entry name" value="HATPase_c"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47384">
        <property type="entry name" value="SSF47384"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55874">
        <property type="entry name" value="SSF55874"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50109">
        <property type="entry name" value="HIS_KIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="12" id="KW-0418">Kinase</keyword>
    <keyword evidence="9 10" id="KW-0472">Membrane</keyword>
    <keyword evidence="6" id="KW-0597">Phosphoprotein</keyword>
    <keyword evidence="13" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="12" id="KW-0808">Transferase</keyword>
    <keyword evidence="7 10" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="8 10" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="10">
        <location>
            <begin position="12"/>
            <end position="33"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="10">
        <location>
            <begin position="177"/>
            <end position="195"/>
        </location>
    </feature>
    <feature type="domain" description="Histidine kinase" evidence="11">
        <location>
            <begin position="252"/>
            <end position="465"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00000085"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00004429"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00012438"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00017234"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022553"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="11">
        <source>
            <dbReference type="PROSITE" id="PS50109"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="EMBL" id="ABX36435.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="13">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="472" mass="51229" checksum="AD4BC816121DB214" modified="2008-01-15" version="1">MLPSLLSKLTLWQRLGLVLVPILGAVTSVELYLTRQDAIDSANAAYDRSLLGALRSIDSNISTASGGLSVELPYSIFDLFELTASGQVYFRVATSDNLVELGSADMPPPPTSLSKNPIFYDGFYFGEPVRVAALMRDLSAKPVGSSADTVTVQVAESKQSRQQFIDKFFQRTLVRDGFVFLSMMIATALAVAAALRPVTRLAKEVRERGADDIAPISTQELPSDLRPLVMAVNRQIEVTKAVVSSKHEFLDYASHQLRTHLTTLRIQMDYAQRINDVAQIHDALGALDAELTGVTRTTQQLLALGRSESAEVNLRTFDLGELVRRIAVSLLPQARQRSIDLGVNVEEEVFATGDELLLQEAVLNLASNALEYCPCGSVVTITGRRSDTGWILAVEDNGPGLPEDELALLGRRYTRGRQSPMDGSGSGLGLAIARIIAQRHKGKLTLAHGSGARGLLVSLEWEDTDSAPLAKK</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="38" xmlns="http://uniprot.org/uniprot">
    <accession>A9BLM0</accession>
    <name>A9BLM0_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="1">YD repeat protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Daci_3874</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="2" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX36505.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_3874"/>
    <dbReference type="PRIDE" id="A9BLM0"/>
    <dbReference type="EnsemblBacteria" id="ABX36505">
        <property type="protein sequence ID" value="ABX36505"/>
        <property type="gene ID" value="Daci_3874"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_3874"/>
    <dbReference type="eggNOG" id="COG3209">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_1486752_0_0_4"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR031325">
        <property type="entry name" value="RHS_repeat"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006530">
        <property type="entry name" value="YD"/>
    </dbReference>
    <dbReference type="Pfam" id="PF05593">
        <property type="entry name" value="RHS_repeat"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01643">
        <property type="entry name" value="YD_repeat_2x"/>
        <property type="match status" value="3"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ABX36505.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="181" mass="19737" checksum="B3025B16BBEF0551" modified="2008-01-15" version="1">MGRTTAYHWDARFNIIATVIAEGTPEQIIEQTPTDATGASTGRIDPLGRRTTLRRDARGNLVQIIGAMGHATTLQYNPLDLVTTLRDALGHEWQQEYDSRGHLVQATDPLGCTTRYRHDARGRTVEVIDAKGDSKQLAWMGPTAPTPACLTAAPCTGCSMARATFTRSTSLTLSYRTSSMN</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="55" xmlns="http://uniprot.org/uniprot">
    <accession>A9BLT4</accession>
    <name>A9BLT4_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_4242</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX36873.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012206045.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_4242"/>
    <dbReference type="PRIDE" id="A9BLT4"/>
    <dbReference type="EnsemblBacteria" id="ABX36873">
        <property type="protein sequence ID" value="ABX36873"/>
        <property type="gene ID" value="Daci_4242"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_4242"/>
    <dbReference type="eggNOG" id="COG1416">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_127515_3_1_4"/>
    <dbReference type="OMA" id="HALVCPN"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.1260.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027396">
        <property type="entry name" value="DsrEFH-like"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF75169">
        <property type="entry name" value="SSF75169"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="21"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="1"/>
            <end position="17"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX36873.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="133" mass="13949" checksum="3CEBB7C0D168A837" modified="2008-01-15" version="1">MSTSRSPAASTASSDWSDLFPARPDASPLRIVLHAPTPGALARARSNLANLRQDRPGAEVRIVINGPAVEALLDAAPGTPQHLDAAALAHALVCPNTLRKLGREAPAGMRVLPQGGIESLALLQQSAWCYVRC</sequence>
</entry>
<entry dataset="Swiss-Prot" created="2009-03-24" modified="2022-08-03" version="83" xmlns="http://uniprot.org/uniprot">
    <accession>A9BM04</accession>
    <name>SERC_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Phosphoserine aminotransferase</fullName>
            <ecNumber evidence="1">2.6.1.52</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="1">Phosphohydroxythreonine aminotransferase</fullName>
            <shortName evidence="1">PSAT</shortName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="1" type="primary">serC</name>
        <name type="ordered locus">Daci_4720</name>
    </gene>
    <organism>
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference key="1">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain>DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="1">Catalyzes the reversible conversion of 3-phosphohydroxypyruvate to phosphoserine and of 3-hydroxy-2-oxo-4-phosphonooxybutanoate to phosphohydroxythreonine.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>2-oxoglutarate + O-phospho-L-serine = 3-phosphooxypyruvate + L-glutamate</text>
            <dbReference type="Rhea" id="RHEA:14329"/>
            <dbReference type="ChEBI" id="CHEBI:16810"/>
            <dbReference type="ChEBI" id="CHEBI:18110"/>
            <dbReference type="ChEBI" id="CHEBI:29985"/>
            <dbReference type="ChEBI" id="CHEBI:57524"/>
            <dbReference type="EC" id="2.6.1.52"/>
        </reaction>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>2-oxoglutarate + 4-(phosphooxy)-L-threonine = (R)-3-hydroxy-2-oxo-4-phosphooxybutanoate + L-glutamate</text>
            <dbReference type="Rhea" id="RHEA:16573"/>
            <dbReference type="ChEBI" id="CHEBI:16810"/>
            <dbReference type="ChEBI" id="CHEBI:29985"/>
            <dbReference type="ChEBI" id="CHEBI:58452"/>
            <dbReference type="ChEBI" id="CHEBI:58538"/>
            <dbReference type="EC" id="2.6.1.52"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>pyridoxal 5'-phosphate</name>
            <dbReference type="ChEBI" id="CHEBI:597326"/>
        </cofactor>
        <text evidence="1">Binds 1 pyridoxal phosphate per subunit.</text>
    </comment>
    <comment type="pathway">
        <text evidence="1">Amino-acid biosynthesis; L-serine biosynthesis; L-serine from 3-phospho-D-glycerate: step 2/3.</text>
    </comment>
    <comment type="pathway">
        <text evidence="1">Cofactor biosynthesis; pyridoxine 5'-phosphate biosynthesis; pyridoxine 5'-phosphate from D-erythrose 4-phosphate: step 3/5.</text>
    </comment>
    <comment type="subunit">
        <text evidence="1">Homodimer.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="1">Belongs to the class-V pyridoxal-phosphate-dependent aminotransferase family. SerC subfamily.</text>
    </comment>
    <dbReference type="EC" id="2.6.1.52" evidence="1"/>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX37349.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012206519.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A9BM04"/>
    <dbReference type="SMR" id="A9BM04"/>
    <dbReference type="STRING" id="398578.Daci_4720"/>
    <dbReference type="PRIDE" id="A9BM04"/>
    <dbReference type="EnsemblBacteria" id="ABX37349">
        <property type="protein sequence ID" value="ABX37349"/>
        <property type="gene ID" value="Daci_4720"/>
    </dbReference>
    <dbReference type="GeneID" id="60688690"/>
    <dbReference type="KEGG" id="dac:Daci_4720"/>
    <dbReference type="eggNOG" id="COG1932">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_034866_0_2_4"/>
    <dbReference type="OMA" id="GYRASMY"/>
    <dbReference type="UniPathway" id="UPA00135">
        <property type="reaction ID" value="UER00197"/>
    </dbReference>
    <dbReference type="UniPathway" id="UPA00244">
        <property type="reaction ID" value="UER00311"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004648">
        <property type="term" value="F:O-phospho-L-serine:2-oxoglutarate aminotransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030170">
        <property type="term" value="F:pyridoxal phosphate binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006564">
        <property type="term" value="P:L-serine biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008615">
        <property type="term" value="P:pyridoxine biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.640.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.1150.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00160">
        <property type="entry name" value="SerC_aminotrans_5"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000192">
        <property type="entry name" value="Aminotrans_V_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020578">
        <property type="entry name" value="Aminotrans_V_PyrdxlP_BS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR022278">
        <property type="entry name" value="Pser_aminoTfrase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015424">
        <property type="entry name" value="PyrdxlP-dep_Trfase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015421">
        <property type="entry name" value="PyrdxlP-dep_Trfase_major"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015422">
        <property type="entry name" value="PyrdxlP-dep_Trfase_small"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43247">
        <property type="entry name" value="PTHR43247"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00266">
        <property type="entry name" value="Aminotran_5"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF000525">
        <property type="entry name" value="SerC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53383">
        <property type="entry name" value="SSF53383"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01364">
        <property type="entry name" value="serC_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00595">
        <property type="entry name" value="AA_TRANSFER_CLASS_5"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword id="KW-0028">Amino-acid biosynthesis</keyword>
    <keyword id="KW-0032">Aminotransferase</keyword>
    <keyword id="KW-0963">Cytoplasm</keyword>
    <keyword id="KW-0663">Pyridoxal phosphate</keyword>
    <keyword id="KW-0664">Pyridoxine biosynthesis</keyword>
    <keyword id="KW-1185">Reference proteome</keyword>
    <keyword id="KW-0718">Serine biosynthesis</keyword>
    <keyword id="KW-0808">Transferase</keyword>
    <feature type="chain" id="PRO_1000097212" description="Phosphoserine aminotransferase">
        <location>
            <begin position="1"/>
            <end position="369"/>
        </location>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <position position="42"/>
        </location>
        <ligand>
            <name>L-glutamate</name>
            <dbReference type="ChEBI" id="CHEBI:29985"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <position position="101"/>
        </location>
        <ligand>
            <name>pyridoxal 5'-phosphate</name>
            <dbReference type="ChEBI" id="CHEBI:597326"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <position position="152"/>
        </location>
        <ligand>
            <name>pyridoxal 5'-phosphate</name>
            <dbReference type="ChEBI" id="CHEBI:597326"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <position position="176"/>
        </location>
        <ligand>
            <name>pyridoxal 5'-phosphate</name>
            <dbReference type="ChEBI" id="CHEBI:597326"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <position position="199"/>
        </location>
        <ligand>
            <name>pyridoxal 5'-phosphate</name>
            <dbReference type="ChEBI" id="CHEBI:597326"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <begin position="241"/>
            <end position="242"/>
        </location>
        <ligand>
            <name>pyridoxal 5'-phosphate</name>
            <dbReference type="ChEBI" id="CHEBI:597326"/>
        </ligand>
    </feature>
    <feature type="modified residue" description="N6-(pyridoxal phosphate)lysine" evidence="1">
        <location>
            <position position="200"/>
        </location>
    </feature>
    <evidence type="ECO:0000255" key="1">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00160"/>
        </source>
    </evidence>
    <sequence length="369" mass="40254" checksum="958448E71773D0C7" modified="2008-01-15" version="1">MNRPYNFSAGPAAIPAEVLQQAAAEMLDWHGSGMSVMEMSHRGKEFISIYEQAEADLRELLAVPPEFKILFMQGGGLAENAIVPLNLSRAGTVDFVLSGSWSQKSAKEARKYVADAHIAASGEDGKFTALPAPESWQLSRGASYVHICSNETIHGVEFQELPDLKALGCDAPLVVDFSSHVASRPVDWSRVGLAFGGAQKNLGPAGLTLVIVREDLLGHALPACPSAFDYKTVADNQSMYNTPPTWGIYIAGLTFQWIKRQTEGGLTGVAALEARNIAKADLFYQYVDQSSFYVNKVAANCRSRMNIPFFLRDESRNDAFLAGARERGLLQLKGHKSVGGMRASIYNAMPIAGVQALVEYMREFEQRNA</sequence>
</entry>
<entry dataset="Swiss-Prot" created="2009-04-14" modified="2022-08-03" version="83" xmlns="http://uniprot.org/uniprot">
    <accession>A9BM60</accession>
    <name>ASSY_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Argininosuccinate synthase</fullName>
            <ecNumber evidence="1">6.3.4.5</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="1">Citrulline--aspartate ligase</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="1" type="primary">argG</name>
        <name type="ordered locus">Daci_4776</name>
    </gene>
    <organism>
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference key="1">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain>DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>ATP + L-aspartate + L-citrulline = 2-(N(omega)-L-arginino)succinate + AMP + diphosphate + H(+)</text>
            <dbReference type="Rhea" id="RHEA:10932"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:29991"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:33019"/>
            <dbReference type="ChEBI" id="CHEBI:57472"/>
            <dbReference type="ChEBI" id="CHEBI:57743"/>
            <dbReference type="ChEBI" id="CHEBI:456215"/>
            <dbReference type="EC" id="6.3.4.5"/>
        </reaction>
    </comment>
    <comment type="pathway">
        <text evidence="1">Amino-acid biosynthesis; L-arginine biosynthesis; L-arginine from L-ornithine and carbamoyl phosphate: step 2/3.</text>
    </comment>
    <comment type="subunit">
        <text evidence="1">Homotetramer.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="1">Belongs to the argininosuccinate synthase family. Type 2 subfamily.</text>
    </comment>
    <dbReference type="EC" id="6.3.4.5" evidence="1"/>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX37405.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012206575.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A9BM60"/>
    <dbReference type="SMR" id="A9BM60"/>
    <dbReference type="STRING" id="398578.Daci_4776"/>
    <dbReference type="PRIDE" id="A9BM60"/>
    <dbReference type="EnsemblBacteria" id="ABX37405">
        <property type="protein sequence ID" value="ABX37405"/>
        <property type="gene ID" value="Daci_4776"/>
    </dbReference>
    <dbReference type="GeneID" id="60689114"/>
    <dbReference type="KEGG" id="dac:Daci_4776"/>
    <dbReference type="eggNOG" id="COG0137">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_032784_4_1_4"/>
    <dbReference type="OMA" id="QCEVVTF"/>
    <dbReference type="UniPathway" id="UPA00068">
        <property type="reaction ID" value="UER00113"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004055">
        <property type="term" value="F:argininosuccinate synthase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0042803">
        <property type="term" value="F:protein homodimerization activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006526">
        <property type="term" value="P:arginine biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.287.400">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.620">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.1260.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00581">
        <property type="entry name" value="Arg_succ_synth_type2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023437">
        <property type="entry name" value="Arg_succ_synth_type2_subfam"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001518">
        <property type="entry name" value="Arginosuc_synth"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018223">
        <property type="entry name" value="Arginosuc_synth_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR024074">
        <property type="entry name" value="AS_cat/multimer_dom_body"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR024073">
        <property type="entry name" value="AS_multimer_C_tail"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014729">
        <property type="entry name" value="Rossmann-like_a/b/a_fold"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11587">
        <property type="entry name" value="PTHR11587"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00764">
        <property type="entry name" value="Arginosuc_synth"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF69864">
        <property type="entry name" value="SSF69864"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00032">
        <property type="entry name" value="argG"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00564">
        <property type="entry name" value="ARGININOSUCCIN_SYN_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00565">
        <property type="entry name" value="ARGININOSUCCIN_SYN_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword id="KW-0028">Amino-acid biosynthesis</keyword>
    <keyword id="KW-0055">Arginine biosynthesis</keyword>
    <keyword id="KW-0067">ATP-binding</keyword>
    <keyword id="KW-0963">Cytoplasm</keyword>
    <keyword id="KW-0436">Ligase</keyword>
    <keyword id="KW-0547">Nucleotide-binding</keyword>
    <keyword id="KW-1185">Reference proteome</keyword>
    <feature type="chain" id="PRO_1000129744" description="Argininosuccinate synthase">
        <location>
            <begin position="1"/>
            <end position="444"/>
        </location>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <begin position="17"/>
            <end position="25"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <position position="43"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <position position="99"/>
        </location>
        <ligand>
            <name>L-citrulline</name>
            <dbReference type="ChEBI" id="CHEBI:57743"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <position position="129"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <position position="131"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <position position="131"/>
        </location>
        <ligand>
            <name>L-aspartate</name>
            <dbReference type="ChEBI" id="CHEBI:29991"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <position position="135"/>
        </location>
        <ligand>
            <name>L-aspartate</name>
            <dbReference type="ChEBI" id="CHEBI:29991"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <position position="135"/>
        </location>
        <ligand>
            <name>L-citrulline</name>
            <dbReference type="ChEBI" id="CHEBI:57743"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <position position="136"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <position position="136"/>
        </location>
        <ligand>
            <name>L-aspartate</name>
            <dbReference type="ChEBI" id="CHEBI:29991"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <position position="139"/>
        </location>
        <ligand>
            <name>L-citrulline</name>
            <dbReference type="ChEBI" id="CHEBI:57743"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <position position="192"/>
        </location>
        <ligand>
            <name>L-citrulline</name>
            <dbReference type="ChEBI" id="CHEBI:57743"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <position position="194"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <position position="201"/>
        </location>
        <ligand>
            <name>L-citrulline</name>
            <dbReference type="ChEBI" id="CHEBI:57743"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <position position="203"/>
        </location>
        <ligand>
            <name>L-citrulline</name>
            <dbReference type="ChEBI" id="CHEBI:57743"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <position position="280"/>
        </location>
        <ligand>
            <name>L-citrulline</name>
            <dbReference type="ChEBI" id="CHEBI:57743"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000255" key="1">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00581"/>
        </source>
    </evidence>
    <sequence length="444" mass="49011" checksum="90A8089FD24A0E86" modified="2008-01-15" version="1">METILQNVPVGQKVGIAFSGGLDTSAALRWMKNKGALPYAYTANLGQPDEADYDEIPRKAMEYGAEQARLIDCRSQLAGEGIAAIQAGAFHISTGGITYFNTTPLGRAVTGTMLVAAMKEDDVNIWGDGSTFKGNDIERFYRYGLLTNPALKIYKPWLDQTFIDELGGRAEMSAFMTKEGFGYKMSAEKAYSTDSNMLGATHEAKDLEFLNSGIRIVNPIMGVAFWKPEVEVKAEEVSVTFDEGRPVAINGKEIADPVELFLEANRIGGRHGLGMSDQIENRIIEAKSRGIYEAPGMALLHIAYERLVTGIHNEDTIEQYRINGLRLGRLLYQGRWFDPQAIMLRETAQRWVARAVTGTVTLELRRGNDYSILNTESPNLTYAPERLSMEKVEDAPFSPADRIGQLTMRNLDLMDTRDKLAIYAKAGLLSLGTSTALPQLGGKE</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="83" xmlns="http://uniprot.org/uniprot">
    <accession>A9BM73</accession>
    <name>A9BM73_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="10">Glycerol-3-phosphate acyltransferase</fullName>
        </recommendedName>
        <alternativeName>
            <fullName evidence="10">Acyl-PO4 G3P acyltransferase</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="10">Acyl-phosphate--glycerol-3-phosphate acyltransferase</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="10">G3P acyltransferase</fullName>
            <shortName evidence="10">GPAT</shortName>
            <ecNumber evidence="10">2.3.1.275</ecNumber>
        </alternativeName>
        <alternativeName>
            <fullName evidence="10">Lysophosphatidic acid synthase</fullName>
            <shortName evidence="10">LPA synthase</shortName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="10" type="primary">plsY</name>
        <name evidence="12" type="ordered locus">Daci_4789</name>
    </gene>
    <organism evidence="12 13">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="12 13" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="13">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="13" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="13">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="10">Catalyzes the transfer of an acyl group from acyl-phosphate (acyl-PO(4)) to glycerol-3-phosphate (G3P) to form lysophosphatidic acid (LPA). This enzyme utilizes acyl-phosphate as fatty acyl donor, but not acyl-CoA or acyl-ACP.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="10">
            <text>an acyl phosphate + sn-glycerol 3-phosphate = a 1-acyl-sn-glycero-3-phosphate + phosphate</text>
            <dbReference type="Rhea" id="RHEA:34075"/>
            <dbReference type="ChEBI" id="CHEBI:43474"/>
            <dbReference type="ChEBI" id="CHEBI:57597"/>
            <dbReference type="ChEBI" id="CHEBI:57970"/>
            <dbReference type="ChEBI" id="CHEBI:59918"/>
            <dbReference type="EC" id="2.3.1.275"/>
        </reaction>
    </comment>
    <comment type="pathway">
        <text evidence="10">Lipid metabolism; phospholipid metabolism.</text>
    </comment>
    <comment type="subunit">
        <text evidence="10">Probably interacts with PlsX.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="10">Cell inner membrane</location>
            <topology evidence="10">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="10">Belongs to the PlsY family.</text>
    </comment>
    <comment type="caution">
        <text evidence="10">Lacks conserved residue(s) required for the propagation of feature annotation.</text>
    </comment>
    <dbReference type="EC" id="2.3.1.275" evidence="10"/>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX37418.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012206588.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_4789"/>
    <dbReference type="PRIDE" id="A9BM73"/>
    <dbReference type="EnsemblBacteria" id="ABX37418">
        <property type="protein sequence ID" value="ABX37418"/>
        <property type="gene ID" value="Daci_4789"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_4789"/>
    <dbReference type="eggNOG" id="COG0344">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_081254_0_0_4"/>
    <dbReference type="OMA" id="WRHRGNL"/>
    <dbReference type="UniPathway" id="UPA00085"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043772">
        <property type="term" value="F:acyl-phosphate glycerol-3-phosphate acyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008654">
        <property type="term" value="P:phospholipid biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01043">
        <property type="entry name" value="PlsY"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003811">
        <property type="entry name" value="G3P_acylTferase_PlsY"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30309">
        <property type="entry name" value="PTHR30309"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02660">
        <property type="entry name" value="G3P_acyltransf"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM01207">
        <property type="entry name" value="G3P_acyltransf"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00023">
        <property type="entry name" value="TIGR00023"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="10" id="KW-0997">Cell inner membrane</keyword>
    <keyword evidence="1 10" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="2 10" id="KW-0444">Lipid biosynthesis</keyword>
    <keyword evidence="6 10" id="KW-0443">Lipid metabolism</keyword>
    <keyword evidence="7 10" id="KW-0472">Membrane</keyword>
    <keyword evidence="8 10" id="KW-0594">Phospholipid biosynthesis</keyword>
    <keyword evidence="9 10" id="KW-1208">Phospholipid metabolism</keyword>
    <keyword evidence="13" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 10" id="KW-0808">Transferase</keyword>
    <keyword evidence="4 10" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="5 10" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="10">
        <location>
            <begin position="81"/>
            <end position="101"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="10">
        <location>
            <begin position="113"/>
            <end position="137"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="10">
        <location>
            <begin position="168"/>
            <end position="187"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="11">
        <location>
            <begin position="204"/>
            <end position="226"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022516"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023098"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00023209"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00023264"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01043"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="EMBL" id="ABX37418.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="13">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="226" mass="23623" checksum="A3C8AB6E478D7E28" modified="2008-01-15" version="1">MNALYPLLATVAAYLIGSLSFAVIVSRAMGLNDPRTYGSGNPGATNVLRSGSKAAAAVTLLLDAAKGWLPVALVQWFGSRFGLGDGTVAMVALAAFLGHLYPVFFRFKGGKGVATALGVLLGISVWLGLAVALTWLIIAVFFRYSSLAALVASVFAPVYYLLCSGVVWYAETPIAAAIVAMAALLIWRHRENIQRLMAGKESRLGSKKADAATAPAKPGTGKGKPH</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="84" xmlns="http://uniprot.org/uniprot">
    <accession>A9BM83</accession>
    <name>A9BM83_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="9">ABC transporter related</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="9" type="ordered locus">Daci_4799</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="9 10" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="10" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX37428.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012206598.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_4799"/>
    <dbReference type="PRIDE" id="A9BM83"/>
    <dbReference type="EnsemblBacteria" id="ABX37428">
        <property type="protein sequence ID" value="ABX37428"/>
        <property type="gene ID" value="Daci_4799"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_4799"/>
    <dbReference type="eggNOG" id="COG3842">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_000604_1_1_4"/>
    <dbReference type="OMA" id="HEIVCVL"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043190">
        <property type="term" value="C:ATP-binding cassette (ABC) transporter complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0022857">
        <property type="term" value="F:transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003593">
        <property type="entry name" value="AAA+_ATPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003439">
        <property type="entry name" value="ABC_transporter-like_ATP-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017871">
        <property type="entry name" value="ABC_transporter-like_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008995">
        <property type="entry name" value="Mo/tungstate-bd_C_term_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013611">
        <property type="entry name" value="Transp-assoc_OB_typ2"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00005">
        <property type="entry name" value="ABC_tran"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08402">
        <property type="entry name" value="TOBE_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00382">
        <property type="entry name" value="AAA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50331">
        <property type="entry name" value="SSF50331"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00211">
        <property type="entry name" value="ABC_TRANSPORTER_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50893">
        <property type="entry name" value="ABC_TRANSPORTER_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4 7" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="2" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="6" id="KW-0472">Membrane</keyword>
    <keyword evidence="3 7" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="5" id="KW-1278">Translocase</keyword>
    <keyword evidence="1" id="KW-0813">Transport</keyword>
    <feature type="domain" description="ABC transporter" evidence="8">
        <location>
            <begin position="8"/>
            <end position="238"/>
        </location>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <begin position="40"/>
            <end position="47"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022448"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022967"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00434"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="PROSITE" id="PS50893"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="ABX37428.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="363" mass="39962" checksum="95884F7821550E05" modified="2008-01-15" version="1">MHLDPVSLECRHISLSYGSNEVLRDVNLKIEPGEFFALLGPSGSGKSTLLRLIAGFNRHQRGELLVGGQDITGVPPHARNIGMVFQNYALWPHMTVYDNVAFGLVERRESRDTIRRKVGEVLELVGLSQYAQRRPGQLSGGQQQRVALARTVVIAPKLLLLDEPLSNLDKQLRVQMREELRSLQRKLGLTTIFVTHDQEEAMTTADRMAVLDKGVLQQVGSAAGLYDYPANRFVAGFVGTANVLEGEVLPTIGESLVFKVPGLGTLTLPRPAQPPVPGRAALAFRPHQVQIAVRDDAGDASRVWVEGQIESAEFLGEFSRYRVRVGEVAVVADQAHYAGIAMFPMGMPVRLGIEPTQLRYLDE</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="58" xmlns="http://uniprot.org/uniprot">
    <accession>A9BMN8</accession>
    <name>A9BMN8_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Lytic transglycosylase catalytic</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ordered locus">Daci_4954</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="5" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX37583.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012206753.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_4954"/>
    <dbReference type="CAZy" id="GH23">
        <property type="family name" value="Glycoside Hydrolase Family 23"/>
    </dbReference>
    <dbReference type="PRIDE" id="A9BMN8"/>
    <dbReference type="EnsemblBacteria" id="ABX37583">
        <property type="protein sequence ID" value="ABX37583"/>
        <property type="gene ID" value="Daci_4954"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_4954"/>
    <dbReference type="eggNOG" id="COG0741">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_052471_1_0_4"/>
    <dbReference type="OMA" id="WLSKKYR"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023346">
        <property type="entry name" value="Lysozyme-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008258">
        <property type="entry name" value="Transglycosylase_SLT_dom_1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01464">
        <property type="entry name" value="SLT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53955">
        <property type="entry name" value="SSF53955"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0472">Membrane</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="2" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="25"/>
            <end position="46"/>
        </location>
    </feature>
    <feature type="domain" description="SLT" evidence="3">
        <location>
            <begin position="126"/>
            <end position="199"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="254"/>
            <end position="303"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="280"/>
            <end position="303"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF01464"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="ABX37583.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="303" mass="31889" checksum="7F6673131AE264D7" modified="2008-01-15" version="1">MPASGKFFAAARTFAIDVANGFLAIIHNSFALLGLAVAFMAITLFARPDLRDAGESQLRSWLTARQMAELGVPVELAASDRATATNPKNLPKEQAAVAFWLSKKYRVAPEPIAALVSEAYDLGKVNRLDPTLILAIMAIESSFNPFAQSAVGAQGLMQVMTTVHTDKYENFGGQNAAFDPVSNLRVGVRVLKECIERAGSIEGGLRYYVGAANLPTDGGYAAKVLAEHQRLRMAAGLRAVPLMTAKVDQPRQAVQVASTKPATPVAEASGPAAAAAPAAVPVSSSNTSARSEQVALQSQEPAL</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="58" xmlns="http://uniprot.org/uniprot">
    <accession>A9BMT7</accession>
    <name>A9BMT7_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Molybdopterin binding domain</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_5003</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX37632.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012206802.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_5003"/>
    <dbReference type="PRIDE" id="A9BMT7"/>
    <dbReference type="EnsemblBacteria" id="ABX37632">
        <property type="protein sequence ID" value="ABX37632"/>
        <property type="gene ID" value="Daci_5003"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_5003"/>
    <dbReference type="eggNOG" id="COG1058">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_030805_0_1_4"/>
    <dbReference type="OMA" id="MAWPMME"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="CDD" id="cd00885">
        <property type="entry name" value="cinA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.980.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036425">
        <property type="entry name" value="MoaB/Mog-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001453">
        <property type="entry name" value="MoaB/Mog_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00994">
        <property type="entry name" value="MoCF_biosynth"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00852">
        <property type="entry name" value="MoCF_biosynth"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53218">
        <property type="entry name" value="SSF53218"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="MoCF_biosynth" evidence="1">
        <location>
            <begin position="6"/>
            <end position="183"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="SMART" id="SM00852"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX37632.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="272" mass="29541" checksum="3ABC1D2CD64DA115" modified="2008-01-15" version="1">MTLQVGALIIGDEILSGKRADKHLPKLIELLGARGLSLAHAEYVGDDRARITDALRRAFASQAVVFSFGGIGATPDDHTRQCAAEALGVPLALHPEAVALIRERMRDVATEEGKPYEPQRADNLHRLQMGNFPEGARIIPNVYNKIPGFSCSGAAGTVHFVPGFPVMAWPMVEWVLEQRYAKHFHSTVQREHSVIVYGGMEATLTPLMVAIERDHPGVKVFSLPSVDDSKHGRHIELGVKGEAGAVTKAWPTLLEGLHSFGASLGPELVRNI</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="75" xmlns="http://uniprot.org/uniprot">
    <accession>A9BMW2</accession>
    <name>A9BMW2_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">Protein-L-isoaspartate O-methyltransferase</fullName>
        </recommendedName>
        <alternativeName>
            <fullName evidence="5">L-isoaspartyl protein carboxyl methyltransferase</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="3">Protein L-isoaspartyl methyltransferase</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="4">Protein-beta-aspartate methyltransferase</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="7" type="ordered locus">Daci_5028</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="8" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the methyltransferase superfamily. L-isoaspartyl/D-aspartyl protein methyltransferase family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX37657.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_5028"/>
    <dbReference type="PRIDE" id="A9BMW2"/>
    <dbReference type="EnsemblBacteria" id="ABX37657">
        <property type="protein sequence ID" value="ABX37657"/>
        <property type="gene ID" value="Daci_5028"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_5028"/>
    <dbReference type="eggNOG" id="COG2518">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_055432_1_0_4"/>
    <dbReference type="OMA" id="TISAIHM"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004719">
        <property type="term" value="F:protein-L-isoaspartate (D-aspartate) O-methyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.150">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000682">
        <property type="entry name" value="PCMT"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029063">
        <property type="entry name" value="SAM-dependent_MTases_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11579">
        <property type="entry name" value="PTHR11579"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53335">
        <property type="entry name" value="SSF53335"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00080">
        <property type="entry name" value="pimt"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="7" id="KW-0489">Methyltransferase</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="7" id="KW-0808">Transferase</keyword>
    <feature type="region of interest" description="Disordered" evidence="6">
        <location>
            <begin position="1"/>
            <end position="29"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00005369"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00013346"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00030757"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00031323"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00031350"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="ABX37657.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="247" mass="25593" checksum="68C4FBA13D366C58" modified="2008-01-15" version="1">MQTPAPASRAAPARSALAPAGARVPQQPSGIGLDSAAVRARMVQRLAATGIQSPAVLAAMGSVERHRFVDSALVNQAYEDTSLPIGLGQTISKPSVVARMTELLLGSEAAKSGLGRVLEIGTGCGYQAAVLARVAREVYSIERLRGLHEKARSNLRPWRLTNVHLIFGDGMEGYGSGAPYAGIISAAGGESMPSAWCDQLAVGGRLVAPMVVTGGKQALLVIDKSSHGFTQSILEAVNFVPLKSGIA</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="67" xmlns="http://uniprot.org/uniprot">
    <accession>A9BNB7</accession>
    <name>A9BNB7_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">NAD(P)H quinone oxidoreductase, PIG3 family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_5183</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX37812.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012206982.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_5183"/>
    <dbReference type="PRIDE" id="A9BNB7"/>
    <dbReference type="EnsemblBacteria" id="ABX37812">
        <property type="protein sequence ID" value="ABX37812"/>
        <property type="gene ID" value="Daci_5183"/>
    </dbReference>
    <dbReference type="GeneID" id="60689534"/>
    <dbReference type="KEGG" id="dac:Daci_5183"/>
    <dbReference type="eggNOG" id="COG0604">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_026673_3_4_4"/>
    <dbReference type="OMA" id="VWSNVFM"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016491">
        <property type="term" value="F:oxidoreductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd05276">
        <property type="entry name" value="p53_inducible_oxidoreductase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013149">
        <property type="entry name" value="ADH-like_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013154">
        <property type="entry name" value="ADH_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011032">
        <property type="entry name" value="GroES-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036291">
        <property type="entry name" value="NAD(P)-bd_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020843">
        <property type="entry name" value="PKS_ER"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014189">
        <property type="entry name" value="Quinone_OxRdtase_PIG3"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08240">
        <property type="entry name" value="ADH_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00107">
        <property type="entry name" value="ADH_zinc_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00829">
        <property type="entry name" value="PKS_ER"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50129">
        <property type="entry name" value="SSF50129"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51735">
        <property type="entry name" value="SSF51735"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR02824">
        <property type="entry name" value="quinone_pig3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="PKS_ER" evidence="1">
        <location>
            <begin position="15"/>
            <end position="331"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="SMART" id="SM00829"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX37812.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="333" mass="34915" checksum="0E123A6C0B0E6B34" modified="2008-01-15" version="1">MEKQIMRAVELTDFGAPEVLRLGERPLPVAGAQELLIQVSASGVNRPDVLQRKGHYAPPPGASDLPGLEVAGVIVSGDDEAMRLAGLRVGDRVCALLAGGGYAEYCVAPVAQCLPIPAGLSEVEASALPETFFTVWSNVFDRGALQAGETLLVQGGSSGIGVTAIQLAKARGATVIVTAGSDAKCADCLKLGADHAINYRTQDFAAEVQRITEGRGVDVILDMVAGGYVAREVQSLAEDGRLVIIAVQGGIKAEFDAGLVLRRRLLVTGSTLRPRPVAFKAAIAQALRREVWPLIEAGGIRPVIHSTFAAADADKAHALMESSQHTGKIVLTW</sequence>
</entry>
<entry dataset="Swiss-Prot" created="2009-04-14" modified="2022-08-03" version="75" xmlns="http://uniprot.org/uniprot">
    <accession>A9BNG0</accession>
    <name>RL9_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">50S ribosomal protein L9</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="1" type="primary">rplI</name>
        <name type="ordered locus">Daci_5226</name>
    </gene>
    <organism>
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference key="1">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain>DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="1">Binds to the 23S rRNA.</text>
    </comment>
    <comment type="similarity">
        <text evidence="1">Belongs to the bacterial ribosomal protein bL9 family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX37855.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012207025.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A9BNG0"/>
    <dbReference type="SMR" id="A9BNG0"/>
    <dbReference type="STRING" id="398578.Daci_5226"/>
    <dbReference type="PRIDE" id="A9BNG0"/>
    <dbReference type="EnsemblBacteria" id="ABX37855">
        <property type="protein sequence ID" value="ABX37855"/>
        <property type="gene ID" value="Daci_5226"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_5226"/>
    <dbReference type="eggNOG" id="COG0359">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_078938_4_1_4"/>
    <dbReference type="OMA" id="MKIILTH"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005840">
        <property type="term" value="C:ribosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0019843">
        <property type="term" value="F:rRNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003735">
        <property type="term" value="F:structural constituent of ribosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006412">
        <property type="term" value="P:translation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.10.430.100">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.5.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00503">
        <property type="entry name" value="Ribosomal_L9"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000244">
        <property type="entry name" value="Ribosomal_L9"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009027">
        <property type="entry name" value="Ribosomal_L9/RNase_H1_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020594">
        <property type="entry name" value="Ribosomal_L9_bac/chp"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020069">
        <property type="entry name" value="Ribosomal_L9_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036791">
        <property type="entry name" value="Ribosomal_L9_C_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020070">
        <property type="entry name" value="Ribosomal_L9_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036935">
        <property type="entry name" value="Ribosomal_L9_N_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR21368">
        <property type="entry name" value="PTHR21368"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03948">
        <property type="entry name" value="Ribosomal_L9_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01281">
        <property type="entry name" value="Ribosomal_L9_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55653">
        <property type="entry name" value="SSF55653"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55658">
        <property type="entry name" value="SSF55658"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00158">
        <property type="entry name" value="L9"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00651">
        <property type="entry name" value="RIBOSOMAL_L9"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword id="KW-1185">Reference proteome</keyword>
    <keyword id="KW-0687">Ribonucleoprotein</keyword>
    <keyword id="KW-0689">Ribosomal protein</keyword>
    <keyword id="KW-0694">RNA-binding</keyword>
    <keyword id="KW-0699">rRNA-binding</keyword>
    <feature type="chain" id="PRO_1000126899" description="50S ribosomal protein L9">
        <location>
            <begin position="1"/>
            <end position="150"/>
        </location>
    </feature>
    <evidence type="ECO:0000255" key="1">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00503"/>
        </source>
    </evidence>
    <sequence length="150" mass="15727" checksum="398C97A2CF2DA255" modified="2008-01-15" version="1">MQVILLDKVVNLGGLGDIVKVKDGYARNFLIPTGAARRATASAKAEFEAKRVELEKQAAEKLAAAQQLGEKLNGVNVKLTQKAGVDGRLFGSVTNADIAEELTKAGFAVAKSQVRLVNGPIKTVGDATVVVALHTDVSVEVTVSVYGDHS</sequence>
</entry>
<entry dataset="Swiss-Prot" created="2009-07-28" modified="2022-08-03" version="81" xmlns="http://uniprot.org/uniprot">
    <accession>A9BNK6</accession>
    <name>FABH_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">3-oxoacyl-[acyl-carrier-protein] synthase 3</fullName>
            <ecNumber evidence="1">2.3.1.180</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="1">3-oxoacyl-[acyl-carrier-protein] synthase III</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="1">Beta-ketoacyl-ACP synthase III</fullName>
            <shortName evidence="1">KAS III</shortName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="1" type="primary">fabH</name>
        <name type="ordered locus">Daci_5272</name>
    </gene>
    <organism>
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference key="1">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain>DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="1">Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP. Catalyzes the first condensation reaction which initiates fatty acid synthesis and may therefore play a role in governing the total rate of fatty acid production. Possesses both acetoacetyl-ACP synthase and acetyl transacylase activities. Its substrate specificity determines the biosynthesis of branched-chain and/or straight-chain of fatty acids.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>acetyl-CoA + H(+) + malonyl-[ACP] = 3-oxobutanoyl-[ACP] + CO2 + CoA</text>
            <dbReference type="Rhea" id="RHEA:12080"/>
            <dbReference type="Rhea" id="RHEA-COMP:9623"/>
            <dbReference type="Rhea" id="RHEA-COMP:9625"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:16526"/>
            <dbReference type="ChEBI" id="CHEBI:57287"/>
            <dbReference type="ChEBI" id="CHEBI:57288"/>
            <dbReference type="ChEBI" id="CHEBI:78449"/>
            <dbReference type="ChEBI" id="CHEBI:78450"/>
            <dbReference type="EC" id="2.3.1.180"/>
        </reaction>
    </comment>
    <comment type="pathway">
        <text evidence="1">Lipid metabolism; fatty acid biosynthesis.</text>
    </comment>
    <comment type="subunit">
        <text evidence="1">Homodimer.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="domain">
        <text evidence="1">The last Arg residue of the ACP-binding site is essential for the weak association between ACP/AcpP and FabH.</text>
    </comment>
    <comment type="similarity">
        <text evidence="1">Belongs to the thiolase-like superfamily. FabH family.</text>
    </comment>
    <dbReference type="EC" id="2.3.1.180" evidence="1"/>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX37901.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012207070.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A9BNK6"/>
    <dbReference type="SMR" id="A9BNK6"/>
    <dbReference type="STRING" id="398578.Daci_5272"/>
    <dbReference type="PRIDE" id="A9BNK6"/>
    <dbReference type="EnsemblBacteria" id="ABX37901">
        <property type="protein sequence ID" value="ABX37901"/>
        <property type="gene ID" value="Daci_5272"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_5272"/>
    <dbReference type="eggNOG" id="COG0332">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_039592_3_1_4"/>
    <dbReference type="OMA" id="WGSEGDK"/>
    <dbReference type="UniPathway" id="UPA00094"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004315">
        <property type="term" value="F:3-oxoacyl-[acyl-carrier-protein] synthase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0033818">
        <property type="term" value="F:beta-ketoacyl-acyl-carrier-protein synthase III activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006633">
        <property type="term" value="P:fatty acid biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.47.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01815">
        <property type="entry name" value="FabH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013751">
        <property type="entry name" value="ACP_syn_III"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013747">
        <property type="entry name" value="ACP_syn_III_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004655">
        <property type="entry name" value="FabH_synth"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016039">
        <property type="entry name" value="Thiolase-like"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08545">
        <property type="entry name" value="ACP_syn_III"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08541">
        <property type="entry name" value="ACP_syn_III_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53901">
        <property type="entry name" value="SSF53901"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00747">
        <property type="entry name" value="fabH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword id="KW-0012">Acyltransferase</keyword>
    <keyword id="KW-0963">Cytoplasm</keyword>
    <keyword id="KW-0275">Fatty acid biosynthesis</keyword>
    <keyword id="KW-0276">Fatty acid metabolism</keyword>
    <keyword id="KW-0444">Lipid biosynthesis</keyword>
    <keyword id="KW-0443">Lipid metabolism</keyword>
    <keyword id="KW-0511">Multifunctional enzyme</keyword>
    <keyword id="KW-1185">Reference proteome</keyword>
    <keyword id="KW-0808">Transferase</keyword>
    <feature type="chain" id="PRO_1000187863" description="3-oxoacyl-[acyl-carrier-protein] synthase 3">
        <location>
            <begin position="1"/>
            <end position="325"/>
        </location>
    </feature>
    <feature type="region of interest" description="ACP-binding" evidence="1">
        <location>
            <begin position="253"/>
            <end position="257"/>
        </location>
    </feature>
    <feature type="active site" evidence="1">
        <location>
            <position position="119"/>
        </location>
    </feature>
    <feature type="active site" evidence="1">
        <location>
            <position position="252"/>
        </location>
    </feature>
    <feature type="active site" evidence="1">
        <location>
            <position position="282"/>
        </location>
    </feature>
    <evidence type="ECO:0000255" key="1">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01815"/>
        </source>
    </evidence>
    <sequence length="325" mass="34075" checksum="912B73B2FCAAB49C" modified="2008-01-15" version="1">MRRYARITGTGSYLPPRRLTNHDLAAELAQRGIETSDEWIVERTGIHARHFAAPDVASSDLALEASKKALEAAGCQPQDIDLIIVATSTPDMVFPSTACILQNKLGANGCAAFDVQAVCSGFVYALTVADAMIQSGAASRALVVGSEVFSRILDFNDRTTCVLFGDGAGAVVLEASEQPGILASDLHADGKHVGILCVPGNVSGGQVLGDPLLKMDGQAVFKLAVGVLEKAARATLDKAGLTDADIDWLIPHQANIRIMQSTARKLKLSMDKVVVTVDQHGNTSAASIPLALDHGVRNGQVKPGQTVLLEGVGGGFTWGAVLLKM</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="81" xmlns="http://uniprot.org/uniprot">
    <accession>A9BNW4</accession>
    <name>A9BNW4_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">Histidine kinase</fullName>
            <ecNumber evidence="2">2.7.13.3</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="7" type="ordered locus">Daci_5380</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="8" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>ATP + protein L-histidine = ADP + protein N-phospho-L-histidine.</text>
            <dbReference type="EC" id="2.7.13.3"/>
        </reaction>
    </comment>
    <dbReference type="EC" id="2.7.13.3" evidence="2"/>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX38009.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012207178.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_5380"/>
    <dbReference type="PRIDE" id="A9BNW4"/>
    <dbReference type="EnsemblBacteria" id="ABX38009">
        <property type="protein sequence ID" value="ABX38009"/>
        <property type="gene ID" value="Daci_5380"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_5380"/>
    <dbReference type="eggNOG" id="COG2205">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_000445_105_2_4"/>
    <dbReference type="OMA" id="ERFERGH"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000155">
        <property type="term" value="F:phosphorelay sensor kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd00082">
        <property type="entry name" value="HisKA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.565.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011622">
        <property type="entry name" value="7TMR_DISM_rcpt_extracell_dom2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003594">
        <property type="entry name" value="HATPase_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036890">
        <property type="entry name" value="HATPase_C_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005467">
        <property type="entry name" value="His_kinase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003661">
        <property type="entry name" value="HisK_dim/P"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036097">
        <property type="entry name" value="HisK_dim/P_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004358">
        <property type="entry name" value="Sig_transdc_His_kin-like_C"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07696">
        <property type="entry name" value="7TMR-DISMED2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02518">
        <property type="entry name" value="HATPase_c"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00344">
        <property type="entry name" value="BCTRLSENSOR"/>
    </dbReference>
    <dbReference type="SMART" id="SM00387">
        <property type="entry name" value="HATPase_c"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00388">
        <property type="entry name" value="HisKA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47384">
        <property type="entry name" value="SSF47384"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55874">
        <property type="entry name" value="SSF55874"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50109">
        <property type="entry name" value="HIS_KIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="7" id="KW-0418">Kinase</keyword>
    <keyword evidence="5" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-0597">Phosphoprotein</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="7" id="KW-0808">Transferase</keyword>
    <keyword evidence="5" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="5" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="12"/>
            <end position="35"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="194"/>
            <end position="215"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="222"/>
            <end position="238"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="250"/>
            <end position="270"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="290"/>
            <end position="307"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="313"/>
            <end position="334"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="346"/>
            <end position="367"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="379"/>
            <end position="401"/>
        </location>
    </feature>
    <feature type="domain" description="Histidine kinase" evidence="6">
        <location>
            <begin position="463"/>
            <end position="676"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="4">
        <location>
            <begin position="656"/>
            <end position="689"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00000085"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00012438"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022553"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="PROSITE" id="PS50109"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="ABX38009.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="689" mass="76473" checksum="D89547C175FBAE70" modified="2008-01-15" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="60" xmlns="http://uniprot.org/uniprot">
    <accession>A9BP54</accession>
    <name>A9BP54_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="11">MscS Mechanosensitive ion channel</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="11" type="ordered locus">Daci_5470</name>
    </gene>
    <organism evidence="11 12">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="11 12" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="12">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="12" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="12">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the MscS (TC 1.A.23) family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX38099.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_5470"/>
    <dbReference type="PRIDE" id="A9BP54"/>
    <dbReference type="EnsemblBacteria" id="ABX38099">
        <property type="protein sequence ID" value="ABX38099"/>
        <property type="gene ID" value="Daci_5470"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_5470"/>
    <dbReference type="eggNOG" id="COG3264">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_011796_1_0_4"/>
    <dbReference type="OMA" id="RATEIQM"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0055085">
        <property type="term" value="P:transmembrane transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.30.30.60">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR022249">
        <property type="entry name" value="DUF3772"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010920">
        <property type="entry name" value="LSM_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006685">
        <property type="entry name" value="MscS_channel"/>
    </dbReference>
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        <property type="entry name" value="MscS_channel_C"/>
    </dbReference>
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        <property type="entry name" value="MscS_channel_TM-2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023408">
        <property type="entry name" value="MscS_dom_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12607">
        <property type="entry name" value="DUF3772"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00924">
        <property type="entry name" value="MS_channel"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50182">
        <property type="entry name" value="SSF50182"/>
        <property type="match status" value="1"/>
    </dbReference>
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        <property type="entry name" value="SSF82689"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF82861">
        <property type="entry name" value="SSF82861"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="6 8" id="KW-0472">Membrane</keyword>
    <keyword evidence="12" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="9" id="KW-0732">Signal</keyword>
    <keyword evidence="4 8" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="5 8" id="KW-1133">Transmembrane helix</keyword>
    <feature type="signal peptide" evidence="9">
        <location>
            <begin position="1"/>
            <end position="43"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5002735861" evidence="9">
        <location>
            <begin position="44"/>
            <end position="835"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="231"/>
            <end position="249"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="270"/>
            <end position="291"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="311"/>
            <end position="331"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="381"/>
            <end position="402"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="423"/>
            <end position="449"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="455"/>
            <end position="473"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="510"/>
            <end position="532"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="561"/>
            <end position="579"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="600"/>
            <end position="623"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="629"/>
            <end position="657"/>
        </location>
    </feature>
    <feature type="domain" description="DUF3772" evidence="10">
        <location>
            <begin position="152"/>
            <end position="213"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="7">
        <location>
            <begin position="117"/>
            <end position="142"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00008017"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="10">
        <source>
            <dbReference type="Pfam" id="PF12607"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="EMBL" id="ABX38099.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="835" mass="87883" checksum="F96DD11545AB04C8" modified="2008-01-15" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="97" xmlns="http://uniprot.org/uniprot">
    <accession>A9BP84</accession>
    <name>A9BP84_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="3 9 10">Chromosomal replication initiator protein DnaA</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="9" type="primary">dnaA</name>
        <name evidence="14" type="ordered locus">Daci_0001</name>
    </gene>
    <organism evidence="14 15">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="14 15" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="15">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="15" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="15">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="9 10">Plays an important role in the initiation and regulation of chromosomal replication. Binds to the origin of replication; it binds specifically double-stranded DNA at a 9 bp consensus (dnaA box): 5'-TTATC[CA]A[CA]A-3'. DnaA binds to ATP and to acidic phospholipids.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1 9">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2 9 11">Belongs to the DnaA family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX32648.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012201941.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_0001"/>
    <dbReference type="PRIDE" id="A9BP84"/>
    <dbReference type="EnsemblBacteria" id="ABX32648">
        <property type="protein sequence ID" value="ABX32648"/>
        <property type="gene ID" value="Daci_0001"/>
    </dbReference>
    <dbReference type="GeneID" id="60690419"/>
    <dbReference type="KEGG" id="dac:Daci_0001"/>
    <dbReference type="eggNOG" id="COG0593">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_026910_0_1_4"/>
    <dbReference type="OMA" id="REFNPLF"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003688">
        <property type="term" value="F:DNA replication origin binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006270">
        <property type="term" value="P:DNA replication initiation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006275">
        <property type="term" value="P:regulation of DNA replication"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd06571">
        <property type="entry name" value="Bac_DnaA_C"/>
        <property type="match status" value="1"/>
    </dbReference>
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        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.300.180">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00377">
        <property type="entry name" value="DnaA_bact"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003593">
        <property type="entry name" value="AAA+_ATPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001957">
        <property type="entry name" value="Chromosome_initiator_DnaA"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020591">
        <property type="entry name" value="Chromosome_initiator_DnaA-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018312">
        <property type="entry name" value="Chromosome_initiator_DnaA_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013317">
        <property type="entry name" value="DnaA"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013159">
        <property type="entry name" value="DnaA_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR024633">
        <property type="entry name" value="DnaA_N_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038454">
        <property type="entry name" value="DnaA_N_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010921">
        <property type="entry name" value="Trp_repressor/repl_initiator"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30050:SF2">
        <property type="entry name" value="PTHR30050:SF2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00308">
        <property type="entry name" value="Bac_DnaA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08299">
        <property type="entry name" value="Bac_DnaA_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF11638">
        <property type="entry name" value="DnaA_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00051">
        <property type="entry name" value="DNAA"/>
    </dbReference>
    <dbReference type="SMART" id="SM00382">
        <property type="entry name" value="AAA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00760">
        <property type="entry name" value="Bac_DnaA_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48295">
        <property type="entry name" value="SSF48295"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00362">
        <property type="entry name" value="DnaA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01008">
        <property type="entry name" value="DNAA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="7 9 10" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="4 9" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="5 9 10" id="KW-0235">DNA replication</keyword>
    <keyword evidence="8 9 10" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="6 9 10" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="15" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="AAA" evidence="12">
        <location>
            <begin position="165"/>
            <end position="299"/>
        </location>
    </feature>
    <feature type="domain" description="Bac_DnaA_C" evidence="13">
        <location>
            <begin position="376"/>
            <end position="445"/>
        </location>
    </feature>
    <feature type="binding site" evidence="9">
        <location>
            <begin position="173"/>
            <end position="180"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004496"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00006583"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00018893"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022490"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022705"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00377"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="RuleBase" id="RU000577"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="RuleBase" id="RU004227"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="12">
        <source>
            <dbReference type="SMART" id="SM00382"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="13">
        <source>
            <dbReference type="SMART" id="SM00760"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="14">
        <source>
            <dbReference type="EMBL" id="ABX32648.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="15">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="468" mass="52770" checksum="194DAEBF1C9DD079" modified="2008-01-15" version="1">MTEEPTNDAGQGLWQVCVEQLGQEMPEQQFNTWIKPLTAHVAEDFSKVTVYVANRFKLDWIRAQYAGRISAMLESLYGQPVTLELALAQRESVVRTYVRPSSSERSAPPETIVTSVPTVTSEDAAAPVFRTRLNAALTFETLVEGTANRMARSAAMHVAGSPGHLYNPLFIYGGVGLGKTHLVHAVGNKLLADKPDAKVLYIHAEQFVSDVVKAYQRRTFDEFKERYHSLDLLLIDDVQFFANKDRTQEEFFNAFEALLAKKSHIVMTSDTYPKGLANIHERLVSRFDSGLTVAIEPPELEMRVAILINKARAENAEMPEEVAFFVAKNVRSNVRELEGALRKILAYSRFNQKEVSIQLAREALRDLLSIQNRQISVENIQKTVADYYKIKVADMYSKKRPASIARPRQIAMYLAKELTQKSLPEIGELFGGRDHTTVLHAVRKIAGERQQLTELNQQLHVLEQTLKG</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="57" xmlns="http://uniprot.org/uniprot">
    <accession>A9BPH6</accession>
    <name>A9BPH6_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">MaoC_dehydrat_N domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_0197</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX32843.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012202136.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_0197"/>
    <dbReference type="PRIDE" id="A9BPH6"/>
    <dbReference type="EnsemblBacteria" id="ABX32843">
        <property type="protein sequence ID" value="ABX32843"/>
        <property type="gene ID" value="Daci_0197"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_0197"/>
    <dbReference type="eggNOG" id="COG3777">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_028690_3_0_4"/>
    <dbReference type="OMA" id="IHYDRRY"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029069">
        <property type="entry name" value="HotDog_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR039569">
        <property type="entry name" value="MaoC-like_dehydrat_N"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13452">
        <property type="entry name" value="MaoC_dehydrat_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54637">
        <property type="entry name" value="SSF54637"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="MaoC_dehydrat_N" evidence="1">
        <location>
            <begin position="89"/>
            <end position="153"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF13452"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX32843.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="301" mass="33132" checksum="7FB481C97C5E9856" modified="2008-01-15" version="1">MAAMTDKQATDTLDAAALAHLQSWQGRSETLADSITAAPVAALSATLDREDPEPADGTALPPLWHWMYFLPHARQSELGPDGHPRRGGFLPPVPLPRRMWAGGRLRWEAGNALQVGQKVQRRSTIGSVSHKSGRSGELLFVLVEHAYSNDQGLALTEEHDIVYRAAAQPGDPAPTPQKPPLDGQQTWSRTIVPDDVLLFRYSALTFNGHRIHYDRRYVTGVEGYPGLIVHGPLIATLLLDLLRRELPQAQVLSFEFKAVRPTFDLHAFSVHGKPSADGKTIELWAQDHEGWLTMTGKATLA</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="57" xmlns="http://uniprot.org/uniprot">
    <accession>A9BPI0</accession>
    <name>A9BPI0_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ordered locus">Daci_0201</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="5" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Periplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the UPF0065 (bug) family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX32847.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012202140.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_0201"/>
    <dbReference type="PRIDE" id="A9BPI0"/>
    <dbReference type="EnsemblBacteria" id="ABX32847">
        <property type="protein sequence ID" value="ABX32847"/>
        <property type="gene ID" value="Daci_0201"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_0201"/>
    <dbReference type="eggNOG" id="COG3181">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_045683_0_0_4"/>
    <dbReference type="OMA" id="FDVKVWH"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0042597">
        <property type="term" value="C:periplasmic space"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.190.150">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005064">
        <property type="entry name" value="BUG"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR042100">
        <property type="entry name" value="Bug_dom1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006311">
        <property type="entry name" value="TAT_signal"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR42928">
        <property type="entry name" value="PTHR42928"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03401">
        <property type="entry name" value="TctC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF017082">
        <property type="entry name" value="YflP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51318">
        <property type="entry name" value="TAT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="3">
        <location>
            <begin position="1"/>
            <end position="32"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5002735658" evidence="3">
        <location>
            <begin position="33"/>
            <end position="335"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004418"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00006987"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="ABX32847.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="335" mass="35586" checksum="3FF98A7E6CF6C1DA" modified="2008-01-15" version="1">MQRTTSFRRRLVYAAAAACALAAGGATTGALAAAWPEKPVVLVVPYSAGGPTDVVARLLAVPMGQVLGQSVLVENTVGAGGTIAPNRVAKAKADGYTILIHHMGMATAPALYKKLPYDPLKDFEYIGQVLDVPMTLLSRKDFPANNFAELLDYVKKNQEKVSLANAGIGAVSQLCGMLFMHQAGVKLTTVPYKGAGPAMNDLMGGQVDLLCDQTTQTVPVIKDGQRAKVFGVTTPKRLSSLPDIPTLDEQGLKGFDVKVWHGMYAPKGTPKDVVMAINKALNVAIKDENVKKRIAELSSDLVTPDKATPEGLRTHLQAEVARWDKVIKAAGVSAE</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="79" xmlns="http://uniprot.org/uniprot">
    <accession>A9BPJ5</accession>
    <name>A9BPJ5_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Transcriptional regulator, LysR family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Daci_0216</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="4" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the LysR transcriptional regulatory family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX32862.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012202155.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_0216"/>
    <dbReference type="PRIDE" id="A9BPJ5"/>
    <dbReference type="EnsemblBacteria" id="ABX32862">
        <property type="protein sequence ID" value="ABX32862"/>
        <property type="gene ID" value="Daci_0216"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_0216"/>
    <dbReference type="eggNOG" id="COG0583">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_039613_35_0_4"/>
    <dbReference type="OMA" id="KVTDMAT"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003700">
        <property type="term" value="F:DNA-binding transcription factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005119">
        <property type="entry name" value="LysR_subst-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000847">
        <property type="entry name" value="Tscrpt_reg_HTH_LysR"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036390">
        <property type="entry name" value="WH_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00126">
        <property type="entry name" value="HTH_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03466">
        <property type="entry name" value="LysR_substrate"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46785">
        <property type="entry name" value="SSF46785"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50931">
        <property type="entry name" value="HTH_LYSR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HTH lysR-type" evidence="2">
        <location>
            <begin position="11"/>
            <end position="60"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00009437"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS50931"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ABX32862.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="303" mass="33256" checksum="345A1C039DFEF12E" modified="2008-01-15" version="1">MSFPADQVPLFLAVLDHGSFSAAARRLGRVPSAVSMAIAQLEAELDLQLFDRSGREPRPTAAARALEPQARLLAAQLQQLNHQALALHQGLEERLTLVIAPELLSTAWAAPLQPLVEEFPGLEVEVLVAAQVDALKELHSGRAHLALVFERPAIDGREDFQEMGQETMVAVMAARHPLARQLGVDGQQRLDVGQLAGARQILLASRDLAHTDPRFVFSHQLWRTDSHLAALSLVSAGLGWGWLPFSVAEPLLQTGALLRIPLCNISNGTQLFVDWVWSKERPLGLAARRFVEQLQVPVQLEPR</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="71" xmlns="http://uniprot.org/uniprot">
    <accession>A9BPL7</accession>
    <name>A9BPL7_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="7">Major facilitator superfamily MFS_1</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ordered locus">Daci_0238</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="8" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX32884.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012202177.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_0238"/>
    <dbReference type="PRIDE" id="A9BPL7"/>
    <dbReference type="EnsemblBacteria" id="ABX32884">
        <property type="protein sequence ID" value="ABX32884"/>
        <property type="gene ID" value="Daci_0238"/>
    </dbReference>
    <dbReference type="GeneID" id="60690640"/>
    <dbReference type="KEGG" id="dac:Daci_0238"/>
    <dbReference type="eggNOG" id="COG0477">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_001265_39_0_4"/>
    <dbReference type="OMA" id="NMPTFAH"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0022857">
        <property type="term" value="F:transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.1250.20">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020846">
        <property type="entry name" value="MFS_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005828">
        <property type="entry name" value="MFS_sugar_transport-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036259">
        <property type="entry name" value="MFS_trans_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005829">
        <property type="entry name" value="Sugar_transporter_CS"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00083">
        <property type="entry name" value="Sugar_tr"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF103473">
        <property type="entry name" value="SSF103473"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50850">
        <property type="entry name" value="MFS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00217">
        <property type="entry name" value="SUGAR_TRANSPORT_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4 5" id="KW-0472">Membrane</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 5" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="3 5" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="15"/>
            <end position="38"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="58"/>
            <end position="81"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="93"/>
            <end position="115"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="121"/>
            <end position="146"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="167"/>
            <end position="184"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="190"/>
            <end position="210"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="248"/>
            <end position="273"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="285"/>
            <end position="306"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="313"/>
            <end position="332"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="344"/>
            <end position="368"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="380"/>
            <end position="400"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="406"/>
            <end position="427"/>
        </location>
    </feature>
    <feature type="domain" description="MFS" evidence="6">
        <location>
            <begin position="14"/>
            <end position="432"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="PROSITE" id="PS50850"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="ABX32884.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="437" mass="47658" checksum="40F4D0493ECDD998" modified="2008-01-15" version="1">MDPALTKQTVSTRNIVAAVIGNALEWYDFLVFAFMTPIVAKLFFPSNPDNPDDNINRILMTTAVFGVGFFMRPVGGILLGLYGDRKGRKAAMVMVTGLMAVAIALITLAPTYAAVGILAPLFIVLARLLQGFAAGGEFGTSTALLIELAPPGKRGFYGSWQMAGQMLALLIGAATGTLITEIFTEEELMAWAWRVPFAVGLLIVPVALYIRRHVEEPEVFKEMQAAQASGKARQIGIMEMLRTHARETLVGMGLVVTATVSIYITFTYLVTYATVTLKLPMRDAFMVQMAGAALMVVIMPFFGALSDRVGRRMLTIGSLIGYLVVLYPLYAWLTDGPTVQKLLITQLVVCVFVAVFFGVFSTVMAELFPPQVRSAGMSMAYNVAVMIFGGFAQFIVTWLIRSTGSPMAPAFYVMFGVTLGLFAAFFIKDRAMERNLR</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="58" xmlns="http://uniprot.org/uniprot">
    <accession>A9BPQ0</accession>
    <name>A9BPQ0_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Carboxymethylenebutenolidase</fullName>
            <ecNumber evidence="2">3.1.1.45</ecNumber>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_0373</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EC" id="3.1.1.45" evidence="2"/>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX33019.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012202312.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_0373"/>
    <dbReference type="PRIDE" id="A9BPQ0"/>
    <dbReference type="EnsemblBacteria" id="ABX33019">
        <property type="protein sequence ID" value="ABX33019"/>
        <property type="gene ID" value="Daci_0373"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_0373"/>
    <dbReference type="eggNOG" id="COG0412">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_054590_7_3_4"/>
    <dbReference type="OMA" id="FAFFGEH"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008806">
        <property type="term" value="F:carboxymethylenebutenolidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.1820">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029058">
        <property type="entry name" value="AB_hydrolase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002925">
        <property type="entry name" value="Dienelactn_hydro"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01738">
        <property type="entry name" value="DLH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53474">
        <property type="entry name" value="SSF53474"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="DLH" evidence="1">
        <location>
            <begin position="17"/>
            <end position="227"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF01738"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX33019.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="230" mass="24300" checksum="F698FF92ECCD1B97" modified="2008-01-15" version="1">MGSFVQLTSLDGTASPAWVARPDVPARGAVVVLQEIFGVNAHIRAVADRLAARGYMAVAPSLFTRVEAGVDLGYGDADRAKGMALKSAAEALPQPGVLPEIEAAIAHAATLVPGGKVGIVGFCWGGLWAWRAACNLPSLSAAACYYGGGMTTPLEMGREPLCPVIAHFGRRDSHIPVDAVQAFAQAQKHVQVHLYDADHGFNCDQRSAYDEASALQARDRTLAFFDQQLA</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="75" xmlns="http://uniprot.org/uniprot">
    <accession>A9BQ02</accession>
    <name>A9BQ02_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="7">Transcriptional regulator, TetR family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ordered locus">Daci_0571</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="8" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX33217.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012202503.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_0571"/>
    <dbReference type="PRIDE" id="A9BQ02"/>
    <dbReference type="EnsemblBacteria" id="ABX33217">
        <property type="protein sequence ID" value="ABX33217"/>
        <property type="gene ID" value="Daci_0571"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_0571"/>
    <dbReference type="eggNOG" id="COG1309">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_069356_12_4_4"/>
    <dbReference type="OMA" id="IVEWYRP"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023772">
        <property type="entry name" value="DNA-bd_HTH_TetR-type_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009057">
        <property type="entry name" value="Homeobox-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001647">
        <property type="entry name" value="HTH_TetR"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041490">
        <property type="entry name" value="KstR2_TetR_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036271">
        <property type="entry name" value="Tet_transcr_reg_TetR-rel_C_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF17932">
        <property type="entry name" value="TetR_C_24"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00440">
        <property type="entry name" value="TetR_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00455">
        <property type="entry name" value="HTHTETR"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46689">
        <property type="entry name" value="SSF46689"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48498">
        <property type="entry name" value="SSF48498"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01081">
        <property type="entry name" value="HTH_TETR_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50977">
        <property type="entry name" value="HTH_TETR_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3 5" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0678">Repressor</keyword>
    <keyword evidence="4" id="KW-0804">Transcription</keyword>
    <keyword evidence="2" id="KW-0805">Transcription regulation</keyword>
    <feature type="domain" description="HTH tetR-type" evidence="6">
        <location>
            <begin position="10"/>
            <end position="70"/>
        </location>
    </feature>
    <feature type="DNA-binding region" description="H-T-H motif" evidence="5">
        <location>
            <begin position="33"/>
            <end position="52"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022491"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023015"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023163"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00335"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="PROSITE" id="PS50977"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="ABX33217.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="219" mass="24177" checksum="760EF056AF616189" modified="2008-01-15" version="1">MARGRSSGYDDQRELILGHAAALFARSGYPGTSMNEVAQACGLSKPTIYHYFRDKYALLVDITDGHMTRLQSLVDEVQSMGLPPEPRLRMLIERFVQEYAHARHAHRVLTEDVRFLQDDDRQRVLGKERAVVETFAQAVAQLRPDADGAGLSKALAMLLFGMMNWMFTWLRPDGSLDHEAMAPVVADLFLGGLPAVQTPGKPGHQTAGKKIVTTVNCGA</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="73" xmlns="http://uniprot.org/uniprot">
    <accession>A9BQ12</accession>
    <name>A9BQ12_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="6">Transcriptional regulator, IclR family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ordered locus">Daci_0581</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="7" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX33227.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_0581"/>
    <dbReference type="PRIDE" id="A9BQ12"/>
    <dbReference type="EnsemblBacteria" id="ABX33227">
        <property type="protein sequence ID" value="ABX33227"/>
        <property type="gene ID" value="Daci_0581"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_0581"/>
    <dbReference type="eggNOG" id="COG1414">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_062618_2_0_4"/>
    <dbReference type="OMA" id="QAHAYLV"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006355">
        <property type="term" value="P:regulation of transcription, DNA-templated"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.450.40">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029016">
        <property type="entry name" value="GAF-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014757">
        <property type="entry name" value="Tscrpt_reg_IclR_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005471">
        <property type="entry name" value="Tscrpt_reg_IclR_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036390">
        <property type="entry name" value="WH_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF09339">
        <property type="entry name" value="HTH_IclR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01614">
        <property type="entry name" value="IclR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00346">
        <property type="entry name" value="HTH_ICLR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46785">
        <property type="entry name" value="SSF46785"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51077">
        <property type="entry name" value="HTH_ICLR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51078">
        <property type="entry name" value="ICLR_ED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0804">Transcription</keyword>
    <keyword evidence="1" id="KW-0805">Transcription regulation</keyword>
    <feature type="domain" description="HTH iclR-type" evidence="4">
        <location>
            <begin position="54"/>
            <end position="116"/>
        </location>
    </feature>
    <feature type="domain" description="IclR-ED" evidence="5">
        <location>
            <begin position="117"/>
            <end position="293"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="3">
        <location>
            <begin position="18"/>
            <end position="54"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023015"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023163"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="PROSITE" id="PS51077"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="PROSITE" id="PS51078"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="ABX33227.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="297" mass="31247" checksum="266F836595323464" modified="2008-01-15" version="1">MNNSFDIVKNPRSRKLRVPAFTMPAMSDAASSPNDPVFPSDSADDEPARGPRGIQSVEVGGQLLKALARTGRRMALKDLAREAGMTAAKAHPYLVSFCKLGLMEQDRASGHYGLGPLAIQMGLISLQQADPVRLAIAELPALAQEVGSTVSIAMWSGQGPTIIRVEEGPTHVYVAMRHGTPASLRHTATGKIFAAFGEPGRIAPLLDAEGHSLEEPAFAKELAAIRASRLSRVENQLLSGVSALAVPVFDGFGQLVLAIAAIGPSATLDLDLQGRPALLLQAQARSLSQRLGAPAQA</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="62" xmlns="http://uniprot.org/uniprot">
    <accession>A9BQM2</accession>
    <name>A9BQM2_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Extracellular ligand-binding receptor</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_0077</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX32724.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012202017.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_0077"/>
    <dbReference type="PRIDE" id="A9BQM2"/>
    <dbReference type="EnsemblBacteria" id="ABX32724">
        <property type="protein sequence ID" value="ABX32724"/>
        <property type="gene ID" value="Daci_0077"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_0077"/>
    <dbReference type="eggNOG" id="COG0683">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_027128_1_2_4"/>
    <dbReference type="OMA" id="MCAPNIF"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR028081">
        <property type="entry name" value="Leu-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR028082">
        <property type="entry name" value="Peripla_BP_I"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13458">
        <property type="entry name" value="Peripla_BP_6"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53822">
        <property type="entry name" value="SSF53822"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0675">Receptor</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Peripla_BP_6" evidence="1">
        <location>
            <begin position="27"/>
            <end position="364"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF13458"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX32724.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="387" mass="41673" checksum="AD66DC96F685445B" modified="2008-01-15" version="1">MNTDRKHWAVLALTASLSCGAYAQDRIKVGFMLPYSGTYAALGSAIENGFRMFVNEQGGRLGGREIEFFKVDDESDPAKATDNVNRLIKRDKVDVLVGTVHSGVAMAMARAAKESGTVLIVPNAGADAVTGAMCAPNIFRSSFSNWQSSYPMGVVAARQEGKKTAMTITWKYAAGEEMTNAFKEGFEKEGGKVSKQLTVPFPNVEFQALLTEIAAARPDAVFAFFAGAGAVKFVKDYHAAGLHKTIPLYGSGFLTDGTLEAQGEAAQGVLTTLHYADELGTERDRRFRSAYAQAYKLMPDVYAVQGYDAAQMLGVGLKAAGGDIAKKAEFRQAIEKATIPSPRGDFTISKSHNPVQDMYLRKVVGKENQRMGVAIKALGDTGRGCRM</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="75" xmlns="http://uniprot.org/uniprot">
    <accession>A9BQT8</accession>
    <name>A9BQT8_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Transcriptional regulator, LysR family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Daci_0144</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="4" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the LysR transcriptional regulatory family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX32790.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012202083.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_0144"/>
    <dbReference type="PRIDE" id="A9BQT8"/>
    <dbReference type="EnsemblBacteria" id="ABX32790">
        <property type="protein sequence ID" value="ABX32790"/>
        <property type="gene ID" value="Daci_0144"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_0144"/>
    <dbReference type="eggNOG" id="COG0583">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_039613_6_4_4"/>
    <dbReference type="OMA" id="MIPFSFR"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003700">
        <property type="term" value="F:DNA-binding transcription factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005119">
        <property type="entry name" value="LysR_subst-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000847">
        <property type="entry name" value="Tscrpt_reg_HTH_LysR"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036390">
        <property type="entry name" value="WH_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00126">
        <property type="entry name" value="HTH_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03466">
        <property type="entry name" value="LysR_substrate"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00039">
        <property type="entry name" value="HTHLYSR"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46785">
        <property type="entry name" value="SSF46785"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50931">
        <property type="entry name" value="HTH_LYSR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HTH lysR-type" evidence="2">
        <location>
            <begin position="4"/>
            <end position="62"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00009437"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS50931"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ABX32790.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="296" mass="31653" checksum="B245B121AED181F2" modified="2008-01-15" version="1">MIQISLRQLEYFVAASRHGSTARAAEAIGVSQPSISKAIADLEALWGEALFVRRHARGLDLTAAGAVRSREAQALLGGARSLQGPRTAAMAGVLRLGFLSTLGARWVPALLAQMQRLHPGIALELVEGDIASLTQQVERGELDAALQYDTGLARPRMELLPVAALPPYVLLPQRHALAARTSVGLAEVARYPLVLINLPHSREYFLSLFREAGVTPLVAHEFASIEMLRSMVANGHGLSVLTTRPVVDRAHDGQRLACRRIRGRVAPQGVVLAVPAGNASPLIAPFLKVARAVIAP</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="86" xmlns="http://uniprot.org/uniprot">
    <accession>A9BR05</accession>
    <name>A9BR05_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="6 7">DNA repair protein RadA</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="6" type="primary">radA</name>
        <name evidence="9" type="ordered locus">Daci_0314</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="9 10" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="10" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="5">Can catalyze the hydrolysis of ATP in the presence of single-stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage.</text>
    </comment>
    <comment type="function">
        <text evidence="7">DNA-dependent ATPase involved in processing of recombination intermediates, plays a role in repairing DNA breaks. Stimulates the branch migration of RecA-mediated strand transfer reactions, allowing the 3' invading strand to extend heteroduplex DNA faster. Binds ssDNA in the presence of ADP but not other nucleotides, has ATPase activity that is stimulated by ssDNA and various branched DNA structures, but inhibited by SSB. Does not have RecA's homology-searching function.</text>
    </comment>
    <comment type="function">
        <text evidence="6">Plays a role in repairing double-strand DNA breaks, probably involving stabilizing or processing branched DNA or blocked replication forks.</text>
    </comment>
    <comment type="domain">
        <text evidence="6">The middle region has homology to RecA with ATPase motifs including the RadA KNRFG motif, while the C-terminus is homologous to Lon protease.</text>
    </comment>
    <comment type="similarity">
        <text evidence="6 7">Belongs to the RecA family. RadA subfamily.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX32960.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_0314"/>
    <dbReference type="MEROPS" id="S16.A04"/>
    <dbReference type="PRIDE" id="A9BR05"/>
    <dbReference type="EnsemblBacteria" id="ABX32960">
        <property type="protein sequence ID" value="ABX32960"/>
        <property type="gene ID" value="Daci_0314"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_0314"/>
    <dbReference type="eggNOG" id="COG1066">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_018264_0_1_4"/>
    <dbReference type="OMA" id="FELMRLA"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0140664">
        <property type="term" value="F:ATP-dependent DNA damage sensor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003684">
        <property type="term" value="F:damaged DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016787">
        <property type="term" value="F:hydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008168">
        <property type="term" value="F:methyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0032259">
        <property type="term" value="P:methylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000725">
        <property type="term" value="P:recombinational repair"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd01121">
        <property type="entry name" value="Sms"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.230.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01498">
        <property type="entry name" value="RadA_bact"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003593">
        <property type="entry name" value="AAA+_ATPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004504">
        <property type="entry name" value="DNA_repair_RadA"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020588">
        <property type="entry name" value="RecA_ATP-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020568">
        <property type="entry name" value="Ribosomal_S5_D2-typ_fold"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014721">
        <property type="entry name" value="Ribosomal_S5_D2-typ_fold_subgr"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041166">
        <property type="entry name" value="Rubredoxin_2"/>
    </dbReference>
    <dbReference type="Pfam" id="PF18073">
        <property type="entry name" value="Rubredoxin_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00382">
        <property type="entry name" value="AAA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54211">
        <property type="entry name" value="SSF54211"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00416">
        <property type="entry name" value="sms"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50162">
        <property type="entry name" value="RECA_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="6 7" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="6 7" id="KW-0227">DNA damage</keyword>
    <keyword evidence="6 7" id="KW-0234">DNA repair</keyword>
    <keyword evidence="6 7" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="3" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="1 6 7" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="9" id="KW-0489">Methyltransferase</keyword>
    <keyword evidence="6 7" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4 6" id="KW-0346">Stress response</keyword>
    <keyword evidence="9" id="KW-0808">Transferase</keyword>
    <keyword evidence="7" id="KW-0862">Zinc</keyword>
    <keyword evidence="2 7" id="KW-0863">Zinc-finger</keyword>
    <feature type="domain" description="RECA_2" evidence="8">
        <location>
            <begin position="88"/>
            <end position="237"/>
        </location>
    </feature>
    <feature type="region of interest" description="Lon-protease-like" evidence="6">
        <location>
            <begin position="372"/>
            <end position="476"/>
        </location>
    </feature>
    <feature type="short sequence motif" description="RadA KNRFG motif" evidence="6">
        <location>
            <begin position="274"/>
            <end position="278"/>
        </location>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <begin position="117"/>
            <end position="124"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022771"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023016"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00025580"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01498"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="RuleBase" id="RU003555"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="PROSITE" id="PS50162"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="ABX32960.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="476" mass="49755" checksum="A8CABF62981A7EAD" modified="2008-01-15" version="1">MRARAAATARYSAHPMAKDKTTFICNACGGTSPRWLGKCPACGAWNSLIEAVAEPASAGKNRLSQPQGYAGLANVQAVMPLSAIEAQDVARTPSGIEELDRVLGGGIVEGGVVLIGGDPGIGKSTLLLQAMDALHRVGLPTLYVTGEESGAQVALRSRRLGLEASQVNVLAEIQLEKILATMEATQPAVVVIDSIQTVYSDQLSSAPGSVAQVRECAAHLTRAAKTTGITVILVGHVTKEGALAGPRVLEHMVDTVLYFEGDTHSNFRLVRAIKNRFGAVNEIGVFAMTEKGLKGVTNPSAIFLSQHSEPVPGSCVLVTLEGTRPMLVEIQALVDQGGPAPRRLSVGLDRDRLAMLLAVLSRHAGVACADQDVFVNAVGGVRISEPAADLAVMLSITSSLRGRALPKGFLAFGEVGLAGEVRPAPRGQERLKEAAKLGFTMAVVPKANAPKKAIAGLTVHAVERVDEAMNIVRGMG</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-05-25" version="69" xmlns="http://uniprot.org/uniprot">
    <accession>A9BRA6</accession>
    <name>A9BRA6_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Transcriptional regulator, BadM/Rrf2 family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Daci_0518</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="2" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX33164.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012202450.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_0518"/>
    <dbReference type="EnsemblBacteria" id="ABX33164">
        <property type="protein sequence ID" value="ABX33164"/>
        <property type="gene ID" value="Daci_0518"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_0518"/>
    <dbReference type="eggNOG" id="COG1959">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_107144_2_1_4"/>
    <dbReference type="OMA" id="SCISLNW"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000944">
        <property type="entry name" value="Tscrpt_reg_Rrf2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036390">
        <property type="entry name" value="WH_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33221">
        <property type="entry name" value="PTHR33221"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02082">
        <property type="entry name" value="Rrf2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46785">
        <property type="entry name" value="SSF46785"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00738">
        <property type="entry name" value="rrf2_super"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51197">
        <property type="entry name" value="HTH_RRF2_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ABX33164.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="146" mass="15505" checksum="13F0CF65CCD208D9" modified="2008-01-15" version="1">MRLTLMTDYALRLLMHVARHPGRLCTIAEIAQAHAISEAHLMKVTHQLALRGWIVTVRGKGGGMRLAHAPADIGLGDVVRGMEPDLAIVECFTGTSPPACTLAQDCRLAGVLGGALDSFMAHLDGFTLADLLPAPASLPLPHRSRA</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="38" xmlns="http://uniprot.org/uniprot">
    <accession>A9BRG2</accession>
    <name>A9BRG2_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Daci_0677</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="2" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX33323.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012202609.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_0677"/>
    <dbReference type="PRIDE" id="A9BRG2"/>
    <dbReference type="EnsemblBacteria" id="ABX33323">
        <property type="protein sequence ID" value="ABX33323"/>
        <property type="gene ID" value="Daci_0677"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_0677"/>
    <dbReference type="eggNOG" id="ENOG5032Y9P">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_1003354_0_0_4"/>
    <dbReference type="OMA" id="WHNREEN"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ABX33323.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="281" mass="31725" checksum="9C31A136153A0B0E" modified="2008-01-15" version="1">MDKKMTSKRMQSPAAQIQERTDALVAASQALYQSFAGYRSPSVALDACVTCCMDADLEREMRRLPLRSLTEHHFYQYNDAAKSVVQPADEIKYLAPRMLELLAQGARLHHSTELYLDRLGRCEPGSFSSQESAALQAFARAFFALGLEQWAEPDTSVFQGEEAFSFLLMWDYAGVPLQPLLDHWLTCDSESATLHFVDACFYEFIWGGHCISNAFASDRNGYRATMEQWLSQTGNKKHWAEKLLQLAERGPASTWLPSGKRDHQCYPLDERIGAVFDAMAT</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="84" xmlns="http://uniprot.org/uniprot">
    <accession>A9BRT8</accession>
    <name>A9BRT8_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="5">S-adenosylmethionine:tRNA ribosyltransferase-isomerase</fullName>
            <ecNumber evidence="5">2.4.99.17</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="5">Queuosine biosynthesis protein QueA</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="5" type="primary">queA</name>
        <name evidence="6" type="ordered locus">Daci_1009</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="7" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="5">Transfers and isomerizes the ribose moiety from AdoMet to the 7-aminomethyl group of 7-deazaguanine (preQ1-tRNA) to give epoxyqueuosine (oQ-tRNA).</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="5">
            <text>7-aminomethyl-7-carbaguanosine(34) in tRNA + S-adenosyl-L-methionine = adenine + epoxyqueuosine(34) in tRNA + H(+) + L-methionine</text>
            <dbReference type="Rhea" id="RHEA:32155"/>
            <dbReference type="Rhea" id="RHEA-COMP:10342"/>
            <dbReference type="Rhea" id="RHEA-COMP:10346"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:16708"/>
            <dbReference type="ChEBI" id="CHEBI:57844"/>
            <dbReference type="ChEBI" id="CHEBI:59789"/>
            <dbReference type="ChEBI" id="CHEBI:82833"/>
            <dbReference type="ChEBI" id="CHEBI:82834"/>
            <dbReference type="EC" id="2.4.99.17"/>
        </reaction>
    </comment>
    <comment type="pathway">
        <text evidence="5">tRNA modification; tRNA-queuosine biosynthesis.</text>
    </comment>
    <comment type="subunit">
        <text evidence="5">Monomer.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="5">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="5">Belongs to the QueA family.</text>
    </comment>
    <dbReference type="EC" id="2.4.99.17" evidence="5"/>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX33655.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_1009"/>
    <dbReference type="PRIDE" id="A9BRT8"/>
    <dbReference type="EnsemblBacteria" id="ABX33655">
        <property type="protein sequence ID" value="ABX33655"/>
        <property type="gene ID" value="Daci_1009"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_1009"/>
    <dbReference type="eggNOG" id="COG0809">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_039110_1_0_4"/>
    <dbReference type="OMA" id="YSYGDGM"/>
    <dbReference type="UniPathway" id="UPA00392"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051075">
        <property type="term" value="F:S-adenosylmethionine:tRNA ribosyltransferase-isomerase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008616">
        <property type="term" value="P:queuosine biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.10.240">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.1780.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00113">
        <property type="entry name" value="QueA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003699">
        <property type="entry name" value="QueA"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR042118">
        <property type="entry name" value="QueA_dom1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR042119">
        <property type="entry name" value="QueA_dom2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036100">
        <property type="entry name" value="QueA_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30307">
        <property type="entry name" value="PTHR30307"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02547">
        <property type="entry name" value="Queuosine_synth"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF111337">
        <property type="entry name" value="SSF111337"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00113">
        <property type="entry name" value="queA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="1 5" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="6" id="KW-0413">Isomerase</keyword>
    <keyword evidence="4 5" id="KW-0671">Queuosine biosynthesis</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 5" id="KW-0949">S-adenosyl-L-methionine</keyword>
    <keyword evidence="2 5 6" id="KW-0808">Transferase</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022490"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022691"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022785"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00113"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="ABX33655.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="388" mass="43366" checksum="BD9CF2705AB88E78" modified="2008-01-15" version="1">MRQWRTSVQRTWNGPCPALKHCMSSLSRVFSLSDFDFELPENLIAQHPAAQRSASRLLDGRDDATPPTDRIFHELPDLLQPGDLLVFNDTRVLKARIFGEKASGGRLELLVERVLEGNDVVAHMRVSKKPLPGSRIHLCGGKNRGGFDAVLRGRWPDENGPLFHLSFEGPRGETPHELMERFGHLPLPPYIERHQDTGNDPDAAEDSERYQTVFAARPGAVAAPTAALHFDDAVLARLAERGIERASVTLHVGAGTFQPVKTENLADHQMHSEWYEIPLATLAALERCRQRGGRVVAVGTTTVRTLESWAQTGQFSGDTRIFITPGFEYQVVDLLITNFHLPKSTLMMLVSAFAGYEQVMALYRHAIAQEYRFFSYGDSMLLKKKSTP</sequence>
</entry>
<entry dataset="Swiss-Prot" created="2009-04-14" modified="2022-08-03" version="75" xmlns="http://uniprot.org/uniprot">
    <accession>A9BRW9</accession>
    <name>RL30_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">50S ribosomal protein L30</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="1" type="primary">rpmD</name>
        <name type="ordered locus">Daci_1040</name>
    </gene>
    <organism>
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference key="1">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain>DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="subunit">
        <text evidence="1">Part of the 50S ribosomal subunit.</text>
    </comment>
    <comment type="similarity">
        <text evidence="1">Belongs to the universal ribosomal protein uL30 family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX33686.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012202972.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A9BRW9"/>
    <dbReference type="SMR" id="A9BRW9"/>
    <dbReference type="STRING" id="398578.Daci_1040"/>
    <dbReference type="PRIDE" id="A9BRW9"/>
    <dbReference type="EnsemblBacteria" id="ABX33686">
        <property type="protein sequence ID" value="ABX33686"/>
        <property type="gene ID" value="Daci_1040"/>
    </dbReference>
    <dbReference type="GeneID" id="60685602"/>
    <dbReference type="KEGG" id="dac:Daci_1040"/>
    <dbReference type="eggNOG" id="COG1841">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_131047_1_4_4"/>
    <dbReference type="OMA" id="GKQNQRD"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015934">
        <property type="term" value="C:large ribosomal subunit"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003735">
        <property type="term" value="F:structural constituent of ribosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006412">
        <property type="term" value="P:translation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd01658">
        <property type="entry name" value="Ribosomal_L30"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.1390.20">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01371_B">
        <property type="entry name" value="Ribosomal_L30_B"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036919">
        <property type="entry name" value="L30_ferredoxin-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005996">
        <property type="entry name" value="Ribosomal_L30_bac-type"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016082">
        <property type="entry name" value="Ribosomal_L30_ferredoxin-like"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR15892">
        <property type="entry name" value="PTHR15892"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00327">
        <property type="entry name" value="Ribosomal_L30"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF002211">
        <property type="entry name" value="Ribosomal_L30_bac-type"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55129">
        <property type="entry name" value="SSF55129"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01308">
        <property type="entry name" value="rpmD_bact"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword id="KW-1185">Reference proteome</keyword>
    <keyword id="KW-0687">Ribonucleoprotein</keyword>
    <keyword id="KW-0689">Ribosomal protein</keyword>
    <feature type="chain" id="PRO_1000144672" description="50S ribosomal protein L30">
        <location>
            <begin position="1"/>
            <end position="60"/>
        </location>
    </feature>
    <evidence type="ECO:0000255" key="1">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01371"/>
        </source>
    </evidence>
    <sequence length="60" mass="6662" checksum="D252AA140E3A8EDF" modified="2008-01-15" version="1">MTTQQTVKVQLVRSPIGTKESHRATVRGLGLRKLNSISELQDTPAVRGMINKISYLVKVL</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="55" xmlns="http://uniprot.org/uniprot">
    <accession>A9BS61</accession>
    <name>A9BS61_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Daci_0825</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="4" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX33471.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_0825"/>
    <dbReference type="PRIDE" id="A9BS61"/>
    <dbReference type="EnsemblBacteria" id="ABX33471">
        <property type="protein sequence ID" value="ABX33471"/>
        <property type="gene ID" value="Daci_0825"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_0825"/>
    <dbReference type="eggNOG" id="COG0697">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_033863_5_0_4"/>
    <dbReference type="OMA" id="GLNWPVM"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000620">
        <property type="entry name" value="EamA_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00892">
        <property type="entry name" value="EamA"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="27"/>
            <end position="46"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="66"/>
            <end position="84"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="90"/>
            <end position="108"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="115"/>
            <end position="132"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="138"/>
            <end position="156"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="168"/>
            <end position="192"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="204"/>
            <end position="226"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="233"/>
            <end position="254"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="260"/>
            <end position="280"/>
        </location>
    </feature>
    <feature type="domain" description="EamA" evidence="2">
        <location>
            <begin position="2"/>
            <end position="130"/>
        </location>
    </feature>
    <feature type="domain" description="EamA" evidence="2">
        <location>
            <begin position="142"/>
            <end position="277"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF00892"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ABX33471.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="283" mass="31176" checksum="95549934C34B4E3B" modified="2008-01-15" version="1">MLIALTLIWGINWPVMKLGVQHFPPLSFRMASMWVGLPILAAFVVWRRLPLAVPRAYWPRLAQLTLFNMVLWNSLIIIAIPMLSSGRAAILGYTMPIFSAVLGSLFFHDRLAPRAWAGVAAALAGVLLLLWHEVGALGSRPIGVGLMLAAALSWAFGTQKLRRAEVPVPLLTMTLWMVALTALTLTVLAFVFERHLWHWPDAQATGAIVFNGVLVLGFGQTVWFFLARSLPPVASTLSVMMIPVLGVFSGAWWLGEVLHWQDWTAVALMVVAIASVLWPARGR</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-05-25" version="48" xmlns="http://uniprot.org/uniprot">
    <accession>A9BSC6</accession>
    <name>A9BSC6_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Biotin/lipoyl attachment domain-containing protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_1095</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX33740.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012203026.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_1095"/>
    <dbReference type="EnsemblBacteria" id="ABX33740">
        <property type="protein sequence ID" value="ABX33740"/>
        <property type="gene ID" value="Daci_1095"/>
    </dbReference>
    <dbReference type="GeneID" id="60685658"/>
    <dbReference type="KEGG" id="dac:Daci_1095"/>
    <dbReference type="eggNOG" id="COG4770">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_016733_9_1_4"/>
    <dbReference type="OMA" id="PVEATHA"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000089">
        <property type="entry name" value="Biotin_lipoyl"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011053">
        <property type="entry name" value="Single_hybrid_motif"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00364">
        <property type="entry name" value="Biotin_lipoyl"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51230">
        <property type="entry name" value="SSF51230"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50968">
        <property type="entry name" value="BIOTINYL_LIPOYL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Lipoyl-binding" evidence="1">
        <location>
            <begin position="1"/>
            <end position="74"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS50968"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX33740.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="74" mass="7464" checksum="B718F624DDAF45BA" modified="2008-01-15" version="1">MTTTPNMITSPIAGLVAAVEAAEGGTVALGDTLIIVESMKMEIPVESEVAGVVRRMLVAVGEPVAEGQAIAEIG</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="74" xmlns="http://uniprot.org/uniprot">
    <accession>A9BSM3</accession>
    <name>A9BSM3_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="8">L-lactate dehydrogenase (Cytochrome)</fullName>
            <ecNumber evidence="8">1.1.2.3</ecNumber>
        </submittedName>
    </protein>
    <gene>
        <name evidence="8" type="ordered locus">Daci_1384</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="9" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>FMN</name>
            <dbReference type="ChEBI" id="CHEBI:58210"/>
        </cofactor>
    </comment>
    <comment type="similarity">
        <text evidence="3">Belongs to the FMN-dependent alpha-hydroxy acid dehydrogenase family.</text>
    </comment>
    <dbReference type="EC" id="1.1.2.3" evidence="8"/>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX34028.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_1384"/>
    <dbReference type="PRIDE" id="A9BSM3"/>
    <dbReference type="EnsemblBacteria" id="ABX34028">
        <property type="protein sequence ID" value="ABX34028"/>
        <property type="gene ID" value="Daci_1384"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_1384"/>
    <dbReference type="eggNOG" id="COG1304">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_020639_0_0_4"/>
    <dbReference type="OMA" id="ADFVWIG"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0010181">
        <property type="term" value="F:FMN binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004460">
        <property type="term" value="F:L-lactate dehydrogenase (cytochrome) activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="CDD" id="cd02809">
        <property type="entry name" value="alpha_hydroxyacid_oxid_FMN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.20.20.70">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013785">
        <property type="entry name" value="Aldolase_TIM"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012133">
        <property type="entry name" value="Alpha-hydoxy_acid_DH_FMN"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000262">
        <property type="entry name" value="FMN-dep_DH"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037396">
        <property type="entry name" value="FMN_HAD"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008259">
        <property type="entry name" value="FMN_hydac_DH_AS"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01070">
        <property type="entry name" value="FMN_dh"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF000138">
        <property type="entry name" value="Al-hdrx_acd_dh"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00557">
        <property type="entry name" value="FMN_HYDROXY_ACID_DH_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51349">
        <property type="entry name" value="FMN_HYDROXY_ACID_DH_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-0285">Flavoprotein</keyword>
    <keyword evidence="5" id="KW-0288">FMN</keyword>
    <keyword evidence="2 8" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="FMN hydroxy acid dehydrogenase" evidence="7">
        <location>
            <begin position="29"/>
            <end position="411"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="6">
        <location>
            <begin position="1"/>
            <end position="28"/>
        </location>
    </feature>
    <feature type="active site" description="Proton acceptor" evidence="4">
        <location>
            <position position="308"/>
        </location>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <position position="55"/>
        </location>
        <ligand>
            <name>glyoxylate</name>
            <dbReference type="ChEBI" id="CHEBI:36655"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <begin position="108"/>
            <end position="110"/>
        </location>
        <ligand>
            <name>FMN</name>
            <dbReference type="ChEBI" id="CHEBI:58210"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <position position="137"/>
        </location>
        <ligand>
            <name>FMN</name>
            <dbReference type="ChEBI" id="CHEBI:58210"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <position position="157"/>
        </location>
        <ligand>
            <name>FMN</name>
            <dbReference type="ChEBI" id="CHEBI:58210"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <position position="159"/>
        </location>
        <ligand>
            <name>glyoxylate</name>
            <dbReference type="ChEBI" id="CHEBI:36655"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <position position="185"/>
        </location>
        <ligand>
            <name>FMN</name>
            <dbReference type="ChEBI" id="CHEBI:58210"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <position position="194"/>
        </location>
        <ligand>
            <name>glyoxylate</name>
            <dbReference type="ChEBI" id="CHEBI:36655"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <position position="284"/>
        </location>
        <ligand>
            <name>FMN</name>
            <dbReference type="ChEBI" id="CHEBI:58210"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <position position="306"/>
        </location>
        <ligand>
            <name>FMN</name>
            <dbReference type="ChEBI" id="CHEBI:58210"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <position position="308"/>
        </location>
        <ligand>
            <name>glyoxylate</name>
            <dbReference type="ChEBI" id="CHEBI:36655"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <position position="311"/>
        </location>
        <ligand>
            <name>glyoxylate</name>
            <dbReference type="ChEBI" id="CHEBI:36655"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <begin position="339"/>
            <end position="343"/>
        </location>
        <ligand>
            <name>FMN</name>
            <dbReference type="ChEBI" id="CHEBI:58210"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <begin position="362"/>
            <end position="363"/>
        </location>
        <ligand>
            <name>FMN</name>
            <dbReference type="ChEBI" id="CHEBI:58210"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001917"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023002"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00024042"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="PIRSR" id="PIRSR000138-1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="PIRSR" id="PIRSR000138-2"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="PROSITE" id="PS51349"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="ABX34028.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="411" mass="44248" checksum="44EE76A163E1CDC2" modified="2008-01-15" version="1">MAAPIEVDRLDTPSSSAPAGAGAGSSTPRRLRRILSLDDFERAARHHLPAPIFAYVSGGCETDKSLRANREAFDAHRWVTRVLTDTSRRTLATPLLGQTWAAPFGIAPMGISALSAYRGDLVQTRAAAAARIPAILSGTSLIRMEEVVQANPQAWFQAYVPGETERIVQLLERVEAAGFATLVVTVDTPVSGNRENNIRAGFSTPLRPGLRLAWEGITHPRWLLGTALRTLVRHGMPHFENSQATRGAPILSSTVTRDFGARDHLSWEHLALIRRRWKGRLVVKGILSPQDALAARDAGADAIILSNHGGRQLDGAVSPLHMLPLVVGALGPDYPVMIDSGFRRGNDVLVALALGAHFVFVGRPFNYAGAVGGEAGVLHAIAILAAEMRRNMALIGVQGLQELGPQHLRPR</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="47" xmlns="http://uniprot.org/uniprot">
    <accession>A9BST4</accession>
    <name>A9BST4_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Daci_1445</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="2" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX34089.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012203375.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_1445"/>
    <dbReference type="PRIDE" id="A9BST4"/>
    <dbReference type="EnsemblBacteria" id="ABX34089">
        <property type="protein sequence ID" value="ABX34089"/>
        <property type="gene ID" value="Daci_1445"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_1445"/>
    <dbReference type="eggNOG" id="COG0179">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_074521_0_0_4"/>
    <dbReference type="OMA" id="SKQMCDK"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR021269">
        <property type="entry name" value="DUF2848"/>
    </dbReference>
    <dbReference type="Pfam" id="PF11010">
        <property type="entry name" value="DUF2848"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ABX34089.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="225" mass="24749" checksum="9994E6FAA33DBE1F" modified="2008-01-15" version="1">MQLQFTTPEGQTFAPEFDTLIVAGWAGRDREAIEHHIEELAAIGIPRPSAVPLYYRISSNQLSQRSALQVLGADSSGEVEVFVFTHEGEMFVSLASDHTDRKLEAYSVAFSKQACVKPVATQAWRFADVAGHWDELVVRSWIVEDGREVLYQEGTLASLRTPQDLIAGFTGGKDLLPAGCGMTCGTVGAIGGIRPSTQFSMELYDPRSRRSIRHSYRSELLDVVA</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="85" xmlns="http://uniprot.org/uniprot">
    <accession>A9BST8</accession>
    <name>A9BST8_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="13">TonB-dependent siderophore receptor</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="13" type="ordered locus">Daci_1449</name>
    </gene>
    <organism evidence="13 14">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="13 14" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="14">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="14" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="14">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="10">Cell outer membrane</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="1 10">Belongs to the TonB-dependent receptor family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX34093.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012203379.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_1449"/>
    <dbReference type="PRIDE" id="A9BST8"/>
    <dbReference type="EnsemblBacteria" id="ABX34093">
        <property type="protein sequence ID" value="ABX34093"/>
        <property type="gene ID" value="Daci_1449"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_1449"/>
    <dbReference type="eggNOG" id="COG4773">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_008287_9_3_4"/>
    <dbReference type="OMA" id="GWGANIP"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009279">
        <property type="term" value="C:cell outer membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015344">
        <property type="term" value="F:siderophore uptake transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0038023">
        <property type="term" value="F:signaling receptor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0055072">
        <property type="term" value="P:iron ion homeostasis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.170.130.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.170.20">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012910">
        <property type="entry name" value="Plug_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037066">
        <property type="entry name" value="Plug_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011662">
        <property type="entry name" value="Secretin/TonB_short_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR039423">
        <property type="entry name" value="TonB-dep_rcpt"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000531">
        <property type="entry name" value="TonB-dep_rcpt_b-brl"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036942">
        <property type="entry name" value="TonB_rcpt_b-brl_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010917">
        <property type="entry name" value="TonB_rcpt_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010105">
        <property type="entry name" value="TonB_sidphr_rcpt"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR32552">
        <property type="entry name" value="PTHR32552"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07715">
        <property type="entry name" value="Plug"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00593">
        <property type="entry name" value="TonB_dep_Rec"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00965">
        <property type="entry name" value="STN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01783">
        <property type="entry name" value="TonB-siderophor"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01156">
        <property type="entry name" value="TONB_DEPENDENT_REC_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="9" id="KW-0998">Cell outer membrane</keyword>
    <keyword evidence="3" id="KW-0406">Ion transport</keyword>
    <keyword evidence="5" id="KW-0408">Iron</keyword>
    <keyword evidence="3" id="KW-0410">Iron transport</keyword>
    <keyword evidence="7 10" id="KW-0472">Membrane</keyword>
    <keyword evidence="8 13" id="KW-0675">Receptor</keyword>
    <keyword evidence="14" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4 11" id="KW-0732">Signal</keyword>
    <keyword evidence="6 10" id="KW-0798">TonB box</keyword>
    <keyword evidence="2" id="KW-0813">Transport</keyword>
    <feature type="signal peptide" evidence="11">
        <location>
            <begin position="1"/>
            <end position="34"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5002733050" evidence="11">
        <location>
            <begin position="35"/>
            <end position="822"/>
        </location>
    </feature>
    <feature type="domain" description="STN" evidence="12">
        <location>
            <begin position="66"/>
            <end position="116"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00009810"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022448"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022496"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022729"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023004"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023077"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00023170"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00023237"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="RuleBase" id="RU003357"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="12">
        <source>
            <dbReference type="SMART" id="SM00965"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="13">
        <source>
            <dbReference type="EMBL" id="ABX34093.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="14">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="822" mass="89560" checksum="17548AAC4DE0D096" modified="2008-01-15" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="84" xmlns="http://uniprot.org/uniprot">
    <accession>A9BSU8</accession>
    <name>A9BSU8_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Transcriptional regulator, LysR family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Daci_1665</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="4" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the LysR transcriptional regulatory family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX34308.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012203593.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_1665"/>
    <dbReference type="PRIDE" id="A9BSU8"/>
    <dbReference type="EnsemblBacteria" id="ABX34308">
        <property type="protein sequence ID" value="ABX34308"/>
        <property type="gene ID" value="Daci_1665"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_1665"/>
    <dbReference type="eggNOG" id="COG0583">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_039613_16_3_4"/>
    <dbReference type="OMA" id="HLRPKVR"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003700">
        <property type="term" value="F:DNA-binding transcription factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005119">
        <property type="entry name" value="LysR_subst-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000847">
        <property type="entry name" value="Tscrpt_reg_HTH_LysR"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036390">
        <property type="entry name" value="WH_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00126">
        <property type="entry name" value="HTH_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03466">
        <property type="entry name" value="LysR_substrate"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46785">
        <property type="entry name" value="SSF46785"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50931">
        <property type="entry name" value="HTH_LYSR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HTH lysR-type" evidence="2">
        <location>
            <begin position="1"/>
            <end position="59"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00009437"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS50931"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ABX34308.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="296" mass="32782" checksum="5089ED8185ECD0A1" modified="2008-01-15" version="1">MDKLRNMEVFMAVVEDGSFAQAARRLDISAVMVGKHVQQLEAHLGARLLQRTTRRHSLTEVGRSFYEDSRQVFEQLRWAESAVERSRSAPQGLLRISAPTTLGNHVIAPLVADYQLANPLVRVDLQLSDSMADLVGENIDVAVRIGPVGGEGLVARPLQPYRMVIAAAPSYLRRRGHPRGVDDLARHDCLSYAVWQRRSEWILRGDGSGSVQWPEDARLRCNSGDGLRHAALRGLGLILQPEVLLAADMAAGRLVPVLQDCVPLPRPVHLVYLPDRRQLPKLAQFVDHMVRALGAA</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-01-19" version="61" xmlns="http://uniprot.org/uniprot">
    <accession>A9BT05</accession>
    <name>A9BT05_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">acidPPc domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Daci_1722</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="4" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX34365.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012203650.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_1722"/>
    <dbReference type="EnsemblBacteria" id="ABX34365">
        <property type="protein sequence ID" value="ABX34365"/>
        <property type="gene ID" value="Daci_1722"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_1722"/>
    <dbReference type="eggNOG" id="COG3907">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_070327_2_0_4"/>
    <dbReference type="OMA" id="AFWRERP"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036938">
        <property type="entry name" value="P_Acid_Pase_2/haloperoxi_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000326">
        <property type="entry name" value="P_Acid_Pase_2/haloperoxidase"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01569">
        <property type="entry name" value="PAP2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48317">
        <property type="entry name" value="SSF48317"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="17"/>
            <end position="37"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="75"/>
            <end position="93"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="105"/>
            <end position="123"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="163"/>
            <end position="181"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="188"/>
            <end position="205"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="217"/>
            <end position="234"/>
        </location>
    </feature>
    <feature type="domain" description="acidPPc" evidence="2">
        <location>
            <begin position="106"/>
            <end position="236"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF01569"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ABX34365.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="253" mass="28793" checksum="07B780995C838DC8" modified="2008-01-15" version="1">MFQEQLGNYIDSQRHQFLITHIFTPFLPIIAMSYVLMAGGGDQWLADSIYGMQGHEWRFVDNWLASTILHRGGKIASILAAITVFCLYTISFLKCAPYIRLWRTPLCYLLLTIIASVVAISLLKSLTNMDCPWSLVDYGGDRPFVGLFETRPSGLGRGKCFPAGHASAGYAWISLYFFYLMVKPSYRWLGLAIGILSGLIFGLTQQFRGAHFASHDLWSLAICWYISALMYTFFSKFESHPRSHYCEKQLYQA</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2020-02-26" version="25" xmlns="http://uniprot.org/uniprot">
    <accession>A9BT11</accession>
    <name>A9BT11_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Daci_1728</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="2" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX34371.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_1728"/>
    <dbReference type="EnsemblBacteria" id="ABX34371">
        <property type="protein sequence ID" value="ABX34371"/>
        <property type="gene ID" value="Daci_1728"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_1728"/>
    <dbReference type="HOGENOM" id="CLU_1882341_0_0_4"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ABX34371.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="135" mass="15173" checksum="B782E3BB803EC94A" modified="2008-01-15" version="1">MLAMRLRLARAFGLTKLEALSMNITTTIRPWGLVLEKNTLVAKGKLSEPRVIPATSTYAMNCLDIASALFTSNSLESTIFEGSLRARSLQLRRLLQKLHVQEKIFFSSASSQERESTRVGAKWAKVQKEILKESF</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="45" xmlns="http://uniprot.org/uniprot">
    <accession>A9BTB4</accession>
    <name>A9BTB4_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_2039</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX34679.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012203964.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_2039"/>
    <dbReference type="PRIDE" id="A9BTB4"/>
    <dbReference type="EnsemblBacteria" id="ABX34679">
        <property type="protein sequence ID" value="ABX34679"/>
        <property type="gene ID" value="Daci_2039"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_2039"/>
    <dbReference type="eggNOG" id="ENOG502Z81F">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_367908_0_0_4"/>
    <dbReference type="OMA" id="NGVFYDR"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="581"/>
            <end position="602"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="608"/>
            <end position="630"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX34679.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="743" mass="78211" checksum="32D608502B7829F6" modified="2008-01-15" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="52" xmlns="http://uniprot.org/uniprot">
    <accession>A9BTG1</accession>
    <name>A9BTG1_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Daci_2290</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="2" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX34929.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012204212.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_2290"/>
    <dbReference type="PRIDE" id="A9BTG1"/>
    <dbReference type="EnsemblBacteria" id="ABX34929">
        <property type="protein sequence ID" value="ABX34929"/>
        <property type="gene ID" value="Daci_2290"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_2290"/>
    <dbReference type="eggNOG" id="COG3214">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_043035_0_0_4"/>
    <dbReference type="OMA" id="FEYWAHE"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009351">
        <property type="entry name" value="YcaQ-like"/>
    </dbReference>
    <dbReference type="Pfam" id="PF06224">
        <property type="entry name" value="HTH_42"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ABX34929.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="365" mass="41418" checksum="9D0D470270E8FA6E" modified="2008-01-15" version="1">MPTEPSLDDLRRHAVARTLFTPTTLPAAIQRLGFVQADPIRAPARAQDLTLRHRVKDYRAGDLERRYARLPIDEDCLVNYGFLPSEHLALMHPRQARKAWDAETQRKAAEVLAFVRERGAAHPREVEQHFSHGSVKNYWGGSGSASTQLLDGMHYRGLLRVKRRDSGTRVYEAIAHPPADDSPAASARRAAALIDLVVRKYAPLPAPSLTYLVRLLGYGAPHLAQQTQAALQLAREQLASCRIDGTTWYWPADENPRSRRHAFDERLRLLAPFDPVVWDRRRFTLLWGWTYKFEAYTPPARRQLGYYALPMLWQGHVIGWANLQARDGRLEPSFGYVAGAAPGDATFRSALDEELQRMELFLAPR</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="61" xmlns="http://uniprot.org/uniprot">
    <accession>A9BTR7</accession>
    <name>A9BTR7_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="7">P-type conjugative transfer protein TrbL</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ordered locus">Daci_2693</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="8" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX35331.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012204559.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_2693"/>
    <dbReference type="PRIDE" id="A9BTR7"/>
    <dbReference type="EnsemblBacteria" id="ABX35331">
        <property type="protein sequence ID" value="ABX35331"/>
        <property type="gene ID" value="Daci_2693"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_2693"/>
    <dbReference type="eggNOG" id="COG3846">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_049867_0_0_4"/>
    <dbReference type="OMA" id="WATRMKR"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030255">
        <property type="term" value="P:protein secretion by the type IV secretion system"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014150">
        <property type="entry name" value="Conjugal_tfr_TrbL"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007688">
        <property type="entry name" value="Conjugal_tfr_TrbL/VirB6"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04610">
        <property type="entry name" value="TrbL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR02783">
        <property type="entry name" value="TrbL_P"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4 6" id="KW-0472">Membrane</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 6" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="3 6" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="29"/>
            <end position="48"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="68"/>
            <end position="89"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="146"/>
            <end position="169"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="176"/>
            <end position="197"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="209"/>
            <end position="228"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="240"/>
            <end position="261"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="273"/>
            <end position="303"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="5">
        <location>
            <begin position="383"/>
            <end position="450"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="5">
        <location>
            <begin position="420"/>
            <end position="450"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="ABX35331.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="450" mass="45241" checksum="B8DB999F864CC860" modified="2008-01-15" version="1">MNDVTVIDRFLDTFSRYIDSGFGLLHGEVAFLTATLIVIDMTLAGLFWAMSHATGQGEDVIAKLIRKVLYVGAFAYIIGNFNWLAGIVFRSFAGLGLTASGSTLSMENFLQPGRLAKVGIDAGAPILKQIGDMAGFPEVFVNITPIVVMFLAWLIVLLCFFVLAIQLFITLIEFKLTTLAGFVLVPFALWNKTAFLAEKVLGNVVSSGIKVLVLAVIVGIGSGLFAEFQVQPAEPSIDHSVVVMLASLTLLALGIFGPGIATGLVSGGPQLGAGAMAGAALGAAGAAVAVGAAATGVGGAVAAGARMAPAAAKLAGSGARAATGAASSARSAFQAGSASAGGGLKGAAAGVGNVAKTGAQATGQKVAEGARSMKERVAAAFRPDDAGSASGGGAAQAANEPTPSTAQPAWAKRLHRRQQLTHAATTAAHTLRGGDCGSSSQGPSLRDSDS</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="59" xmlns="http://uniprot.org/uniprot">
    <accession>A9BTS8</accession>
    <name>A9BTS8_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="6 18">Diacylglycerol kinase</fullName>
            <ecNumber evidence="5 18">2.7.1.107</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="19" type="ordered locus">Daci_2704</name>
    </gene>
    <organism evidence="19 20">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="19 20" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="20">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="20" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="20">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="18">Catalyzes the ATP-dependent phosphorylation of sn-l,2-diacylglycerol (DAG) to phosphatidic acid. Involved in the recycling of diacylglycerol produced as a by-product during membrane-derived oligosaccharide (MDO) biosynthesis.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="18">
            <text>a 1,2-diacyl-sn-glycerol + ATP = a 1,2-diacyl-sn-glycero-3-phosphate + ADP + H(+)</text>
            <dbReference type="Rhea" id="RHEA:10272"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:17815"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:58608"/>
            <dbReference type="ChEBI" id="CHEBI:456216"/>
            <dbReference type="EC" id="2.7.1.107"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </cofactor>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="3 18">Cell inner membrane</location>
            <topology evidence="3 18">Multi-pass membrane protein</topology>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="2">Membrane</location>
            <topology evidence="2">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="4 18">Belongs to the bacterial diacylglycerol kinase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="18">Lacks conserved residue(s) required for the propagation of feature annotation.</text>
    </comment>
    <dbReference type="EC" id="2.7.1.107" evidence="5 18"/>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX35342.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_2704"/>
    <dbReference type="PRIDE" id="A9BTS8"/>
    <dbReference type="EnsemblBacteria" id="ABX35342">
        <property type="protein sequence ID" value="ABX35342"/>
        <property type="gene ID" value="Daci_2704"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_2704"/>
    <dbReference type="eggNOG" id="COG0818">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_112343_3_0_4"/>
    <dbReference type="OMA" id="KCAWVEE"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004143">
        <property type="term" value="F:diacylglycerol kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006654">
        <property type="term" value="P:phosphatidic acid biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016310">
        <property type="term" value="P:phosphorylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd14264">
        <property type="entry name" value="DAGK_IM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.287.3610">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000829">
        <property type="entry name" value="DAGK"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR033718">
        <property type="entry name" value="DAGK_prok"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036945">
        <property type="entry name" value="DAGK_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR34299">
        <property type="entry name" value="PTHR34299"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01219">
        <property type="entry name" value="DAGK_prokar"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="14 18" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="8 18" id="KW-0997">Cell inner membrane</keyword>
    <keyword evidence="7" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="13 18 19" id="KW-0418">Kinase</keyword>
    <keyword evidence="18" id="KW-0443">Lipid metabolism</keyword>
    <keyword evidence="15" id="KW-0460">Magnesium</keyword>
    <keyword evidence="17 18" id="KW-0472">Membrane</keyword>
    <keyword evidence="11" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="12 18" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="18" id="KW-1208">Phospholipid metabolism</keyword>
    <keyword evidence="20" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="9 18" id="KW-0808">Transferase</keyword>
    <keyword evidence="10 18" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="16 18" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="18">
        <location>
            <begin position="114"/>
            <end position="135"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001946"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00004429"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00005967"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00012133"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00017575"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00022519"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="12">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="13">
        <source>
            <dbReference type="ARBA" id="ARBA00022777"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="14">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="15">
        <source>
            <dbReference type="ARBA" id="ARBA00022842"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="16">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="17">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="18">
        <source>
            <dbReference type="RuleBase" id="RU363065"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="19">
        <source>
            <dbReference type="EMBL" id="ABX35342.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="20">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="140" mass="15653" checksum="D3DB3908AC48E39A" modified="2008-01-15" version="1">MKDKKHTIAADSMSAFENKQKSRRGILRIWHASHYSIQGLRAGWNEPAFRLESVFSFVLVPLAFWLGQGWVEVALLSGSILILMIVELLNTAVESAIDRIGPQWHELSKRAKDMGSAAVLLATLLTGGVWLSALWQRLIN</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="62" xmlns="http://uniprot.org/uniprot">
    <accession>A9BTV7</accession>
    <name>A9BTV7_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="4">ParB domain protein nuclease</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ordered locus">Daci_2733</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="5" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX35371.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_003056209.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_2733"/>
    <dbReference type="PRIDE" id="A9BTV7"/>
    <dbReference type="EnsemblBacteria" id="ABX35371">
        <property type="protein sequence ID" value="ABX35371"/>
        <property type="gene ID" value="Daci_2733"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_2733"/>
    <dbReference type="eggNOG" id="COG1475">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_019174_1_0_4"/>
    <dbReference type="OMA" id="FERPNPY"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003115">
        <property type="entry name" value="ParB/Sulfiredoxin_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036086">
        <property type="entry name" value="ParB/Sulfiredoxin_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02195">
        <property type="entry name" value="ParBc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00470">
        <property type="entry name" value="ParB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF110849">
        <property type="entry name" value="SSF110849"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="ParB" evidence="3">
        <location>
            <begin position="29"/>
            <end position="127"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="422"/>
            <end position="441"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="653"/>
            <end position="688"/>
        </location>
    </feature>
    <feature type="coiled-coil region" evidence="1">
        <location>
            <begin position="321"/>
            <end position="374"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="SMART" id="SM00470"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="ABX35371.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="688" mass="74753" checksum="82B4151DC6748AE0" modified="2008-01-15" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="47" xmlns="http://uniprot.org/uniprot">
    <accession>A9BUH8</accession>
    <name>A9BUH8_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_1237</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX33881.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012203167.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_1237"/>
    <dbReference type="PRIDE" id="A9BUH8"/>
    <dbReference type="EnsemblBacteria" id="ABX33881">
        <property type="protein sequence ID" value="ABX33881"/>
        <property type="gene ID" value="Daci_1237"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_1237"/>
    <dbReference type="eggNOG" id="COG1462">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_501437_0_0_4"/>
    <dbReference type="OMA" id="CCTIRID"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030288">
        <property type="term" value="C:outer membrane-bounded periplasmic space"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005534">
        <property type="entry name" value="Curli_assmbl/transp-comp_CsgG"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03783">
        <property type="entry name" value="CsgG"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="17"/>
            <end position="43"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="444"/>
            <end position="484"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX33881.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="484" mass="50646" checksum="6DF73235F1F0ACAB" modified="2008-01-15" version="1">MRTRIIAAVVAACAAMSGCGDKPSEQPRTDAPEQPQSVAPPVPDVGRLETVEVQVIGLGQSPGEAMAQALQMALLQVNGAVIQSASVTARYGLDVALGQDAASLRASAFAEVVKQKSGGVIQSVQVVDLEEPKPWAKRYKYTIKASISKFKPSAEMQKIKVVVGPVRFEQASLPMGDRSVSAAEVGATLRQRISDALVQTGRFAVLDREFSPEIEQELAIIATGQAPSAELAKLSQAASADLVWSARVSSFAYNRHARQLKTSDRQLVSYSGGWALSQKLVNVATRQVTASDSLRGSVPSTAPTTLGAGVDGNKVMTDMSDALVAGVVSSILQRTFPLTVVARDGESVVLSQGGQAVKEGARYQVVAMGKEMKDPQTGQSLGRLESPCCELVVDRVTPNLSYGHLENMRGGMEDLPPGGLQVREVLKASAAPVLAAQAASGDMAAAAEPQAAPARAAQAPAARRAASPAKEADAPVGKKDDDNW</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="48" xmlns="http://uniprot.org/uniprot">
    <accession>A9BUI0</accession>
    <name>A9BUI0_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_1239</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX33883.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012203169.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_1239"/>
    <dbReference type="PRIDE" id="A9BUI0"/>
    <dbReference type="EnsemblBacteria" id="ABX33883">
        <property type="protein sequence ID" value="ABX33883"/>
        <property type="gene ID" value="Daci_1239"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_1239"/>
    <dbReference type="eggNOG" id="ENOG5033JXJ">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_112342_1_0_4"/>
    <dbReference type="OMA" id="AASWQDQ"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019637">
        <property type="entry name" value="DUF2501"/>
    </dbReference>
    <dbReference type="Pfam" id="PF10696">
        <property type="entry name" value="DUF2501"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="1">
        <location>
            <begin position="1"/>
            <end position="23"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5002733091" evidence="1">
        <location>
            <begin position="24"/>
            <end position="161"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX33883.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="161" mass="15793" checksum="E1A9148C3B922A7A" modified="2008-01-15" version="1">MKTSIASALLCAMLGLGALPAQASGLGDSLRQASGLGGDKAAASSEGSGLGGMLGAGAGGAGALSALGLSPSATAGNAAGVISYCMKNNYLNADKAAQVKDQLLGKLGMQKQEEPKDTGFQNGLGGLVTGSNGKSFSIDKLKGDLKEKACDFVLNNAKSLI</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="84" xmlns="http://uniprot.org/uniprot">
    <accession>A9BUW4</accession>
    <name>A9BUW4_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Transcriptional regulator, MarR family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_1784</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX34426.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012203711.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_1784"/>
    <dbReference type="PRIDE" id="A9BUW4"/>
    <dbReference type="EnsemblBacteria" id="ABX34426">
        <property type="protein sequence ID" value="ABX34426"/>
        <property type="gene ID" value="Daci_1784"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_1784"/>
    <dbReference type="eggNOG" id="COG1846">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_083287_27_3_4"/>
    <dbReference type="OMA" id="TTGAMTK"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003700">
        <property type="term" value="F:DNA-binding transcription factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000835">
        <property type="entry name" value="HTH_MarR-typ"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023187">
        <property type="entry name" value="Tscrpt_reg_MarR-type_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036390">
        <property type="entry name" value="WH_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12802">
        <property type="entry name" value="MarR_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00598">
        <property type="entry name" value="HTHMARR"/>
    </dbReference>
    <dbReference type="SMART" id="SM00347">
        <property type="entry name" value="HTH_MARR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46785">
        <property type="entry name" value="SSF46785"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01117">
        <property type="entry name" value="HTH_MARR_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50995">
        <property type="entry name" value="HTH_MARR_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HTH marR-type" evidence="1">
        <location>
            <begin position="43"/>
            <end position="182"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS50995"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX34426.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="190" mass="20544" checksum="778203BF1EC77E13" modified="2008-01-15" version="1">MSPRKTAAAPAPASTPLANAPEALRPHLALMAETAQPGTDTPAAGLGLLLLWLADDVEQRANASLQAFGLSESKLDVLMIFGLAERGLLGDTVVTPSYIASYVGVTRSSVTGLLDWLEKRSLLARSLSQEDRRSFDLALTDQGREVLARALPAFWRMCESLVDYLDEGERASLQSILFKAWTRMKAQEGA</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="98" xmlns="http://uniprot.org/uniprot">
    <accession>A9BVP8</accession>
    <name>A9BVP8_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="9">Heavy metal translocating P-type ATPase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="9" type="ordered locus">Daci_2773</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="9 10" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="10" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="6">Cell membrane</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="1 6">Belongs to the cation transport ATPase (P-type) (TC 3.A.3) family. Type IB subfamily.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX35411.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_2773"/>
    <dbReference type="PRIDE" id="A9BVP8"/>
    <dbReference type="EnsemblBacteria" id="ABX35411">
        <property type="protein sequence ID" value="ABX35411"/>
        <property type="gene ID" value="Daci_2773"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_2773"/>
    <dbReference type="eggNOG" id="COG2217">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="eggNOG" id="COG2608">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_001771_0_3_4"/>
    <dbReference type="OMA" id="CAACGWL"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016887">
        <property type="term" value="F:ATP hydrolysis activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0019829">
        <property type="term" value="F:ATPase-coupled cation transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd00371">
        <property type="entry name" value="HMA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.1110.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.1000">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023299">
        <property type="entry name" value="ATPase_P-typ_cyto_dom_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018303">
        <property type="entry name" value="ATPase_P-typ_P_site"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023298">
        <property type="entry name" value="ATPase_P-typ_TM_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008250">
        <property type="entry name" value="ATPase_P-typ_transduc_dom_A_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036412">
        <property type="entry name" value="HAD-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023214">
        <property type="entry name" value="HAD_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006121">
        <property type="entry name" value="HMA_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036163">
        <property type="entry name" value="HMA_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027256">
        <property type="entry name" value="P-typ_ATPase_IB"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001757">
        <property type="entry name" value="P_typ_ATPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR044492">
        <property type="entry name" value="P_typ_ATPase_HD_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00403">
        <property type="entry name" value="HMA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SFLD" id="SFLDF00027">
        <property type="entry name" value="p-type_atpase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55008">
        <property type="entry name" value="SSF55008"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56784">
        <property type="entry name" value="SSF56784"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF81653">
        <property type="entry name" value="SSF81653"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF81665">
        <property type="entry name" value="SSF81665"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01525">
        <property type="entry name" value="ATPase-IB_hvy"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01494">
        <property type="entry name" value="ATPase_P-type"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00154">
        <property type="entry name" value="ATPASE_E1_E2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50846">
        <property type="entry name" value="HMA_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="6" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="5 6" id="KW-0472">Membrane</keyword>
    <keyword evidence="6" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="6" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-1278">Translocase</keyword>
    <keyword evidence="2 6" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="4 6" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="161"/>
            <end position="180"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="200"/>
            <end position="218"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="230"/>
            <end position="250"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="262"/>
            <end position="280"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="415"/>
            <end position="436"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="442"/>
            <end position="467"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="747"/>
            <end position="763"/>
        </location>
    </feature>
    <feature type="domain" description="HMA" evidence="8">
        <location>
            <begin position="78"/>
            <end position="144"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="7">
        <location>
            <begin position="50"/>
            <end position="74"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00006024"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022967"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="RuleBase" id="RU362081"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="PROSITE" id="PS50846"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="ABX35411.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="824" mass="87777" checksum="0B191FF5780B3E1C" modified="2008-01-15" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="62" xmlns="http://uniprot.org/uniprot">
    <accession>A9BW09</accession>
    <name>A9BW09_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Daci_3187</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="4" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX35825.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012205025.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_3187"/>
    <dbReference type="PRIDE" id="A9BW09"/>
    <dbReference type="EnsemblBacteria" id="ABX35825">
        <property type="protein sequence ID" value="ABX35825"/>
        <property type="gene ID" value="Daci_3187"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_3187"/>
    <dbReference type="eggNOG" id="COG0697">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_033863_21_0_4"/>
    <dbReference type="OMA" id="TFLAVQY"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000620">
        <property type="entry name" value="EamA_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00892">
        <property type="entry name" value="EamA"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="20"/>
            <end position="40"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="46"/>
            <end position="64"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="76"/>
            <end position="93"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="105"/>
            <end position="123"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="130"/>
            <end position="149"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="161"/>
            <end position="182"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="189"/>
            <end position="209"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="215"/>
            <end position="237"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="274"/>
            <end position="293"/>
        </location>
    </feature>
    <feature type="domain" description="EamA" evidence="2">
        <location>
            <begin position="20"/>
            <end position="146"/>
        </location>
    </feature>
    <feature type="domain" description="EamA" evidence="2">
        <location>
            <begin position="159"/>
            <end position="288"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF00892"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ABX35825.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="300" mass="31551" checksum="807D97F4FA9618EA" modified="2008-01-15" version="1">MLHTSSSHSSRTPLLSRQELALIAVTMVWGGTFLVVHLAMQHSGPLFFVGLRFVTAGLIGLLVFRKAMAGLTRTELVAGIAIGTSIFLGYGLQTFGLQTISSSKSAFLTALYVPLVPLVQWLVMGKPPRLMSWIGIGLAFTGLMLVAGPESGGMELNVGEMATMLSTLAIAAEVLLIGHFAGKVDARRVTTVQLLAAGVMALLAMPVSGESVPDFSWVWLSAAVAMACASILIQLTMNWAQKSLSPTRATVIYASEPVWAGIVGRMAGDRLPGLAILGAALIVGGVLVSELRLGRQTPKP</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="44" xmlns="http://uniprot.org/uniprot">
    <accession>A9BW44</accession>
    <name>A9BW44_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_3222</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX35860.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012205060.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_3222"/>
    <dbReference type="EnsemblBacteria" id="ABX35860">
        <property type="protein sequence ID" value="ABX35860"/>
        <property type="gene ID" value="Daci_3222"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_3222"/>
    <dbReference type="eggNOG" id="ENOG50332F3">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_106206_0_0_4"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="77"/>
            <end position="107"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="77"/>
            <end position="103"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX35860.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="161" mass="17108" checksum="14D7503717598D98" modified="2008-01-15" version="1">MTPDKQKQKLAGQTAIAQKVFQAVPIAEAWTVAQISQSLHRTTGARLDRHTLQGCLRALADSDLIRSTEHGSLHQRVAVSAAQSTPPKTKESTVTQPAKPATPQQAAPASAIDVLGCLAQKMRALADEVDAAALALEEEQSRTTGEAAKLKQLKALLKEIA</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="93" xmlns="http://uniprot.org/uniprot">
    <accession>A9BWB0</accession>
    <name>A9BWB0_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="6 10">Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex</fullName>
            <ecNumber evidence="5 10">2.3.1.61</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="10">2-oxoglutarate dehydrogenase complex component E2</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="13" type="ordered locus">Daci_3494</name>
    </gene>
    <organism evidence="13 14">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="13 14" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="14">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="14" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="14">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="2 10">E2 component of the 2-oxoglutarate dehydrogenase (OGDH) complex which catalyzes the second step in the conversion of 2-oxoglutarate to succinyl-CoA and CO(2).</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1 10">
            <text>(R)-N(6)-dihydrolipoyl-L-lysyl-[2-oxoglutarate dehydrogenase complex component E2] + succinyl-CoA = (R)-N(6)-(S(8)-succinyldihydrolipoyl)-L-lysyl-[2-oxoglutarate dehydrogenase complex component E2] + CoA</text>
            <dbReference type="Rhea" id="RHEA:15213"/>
            <dbReference type="Rhea" id="RHEA-COMP:10581"/>
            <dbReference type="Rhea" id="RHEA-COMP:10582"/>
            <dbReference type="ChEBI" id="CHEBI:57287"/>
            <dbReference type="ChEBI" id="CHEBI:57292"/>
            <dbReference type="ChEBI" id="CHEBI:83100"/>
            <dbReference type="ChEBI" id="CHEBI:83120"/>
            <dbReference type="EC" id="2.3.1.61"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="10">
            <name>(R)-lipoate</name>
            <dbReference type="ChEBI" id="CHEBI:83088"/>
        </cofactor>
        <text evidence="10">Binds 1 lipoyl cofactor covalently.</text>
    </comment>
    <comment type="pathway">
        <text evidence="3 10">Amino-acid degradation; L-lysine degradation via saccharopine pathway; glutaryl-CoA from L-lysine: step 6/6.</text>
    </comment>
    <comment type="similarity">
        <text evidence="4 10">Belongs to the 2-oxoacid dehydrogenase family.</text>
    </comment>
    <dbReference type="EC" id="2.3.1.61" evidence="5 10"/>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX36130.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012205330.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_3494"/>
    <dbReference type="PRIDE" id="A9BWB0"/>
    <dbReference type="EnsemblBacteria" id="ABX36130">
        <property type="protein sequence ID" value="ABX36130"/>
        <property type="gene ID" value="Daci_3494"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_3494"/>
    <dbReference type="eggNOG" id="COG0508">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_016733_0_0_4"/>
    <dbReference type="OMA" id="MKVPSPG"/>
    <dbReference type="UniPathway" id="UPA00868">
        <property type="reaction ID" value="UER00840"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0045252">
        <property type="term" value="C:oxoglutarate dehydrogenase complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004149">
        <property type="term" value="F:dihydrolipoyllysine-residue succinyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0033512">
        <property type="term" value="P:L-lysine catabolic process to acetyl-CoA via saccharopine"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006099">
        <property type="term" value="P:tricarboxylic acid cycle"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.559.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="4.10.320.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003016">
        <property type="entry name" value="2-oxoA_DH_lipoyl-BS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001078">
        <property type="entry name" value="2-oxoacid_DH_actylTfrase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000089">
        <property type="entry name" value="Biotin_lipoyl"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023213">
        <property type="entry name" value="CAT-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036625">
        <property type="entry name" value="E3-bd_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004167">
        <property type="entry name" value="PSBD"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011053">
        <property type="entry name" value="Single_hybrid_motif"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006255">
        <property type="entry name" value="SucB"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00198">
        <property type="entry name" value="2-oxoacid_dh"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00364">
        <property type="entry name" value="Biotin_lipoyl"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02817">
        <property type="entry name" value="E3_binding"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47005">
        <property type="entry name" value="SSF47005"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51230">
        <property type="entry name" value="SSF51230"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01347">
        <property type="entry name" value="sucB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50968">
        <property type="entry name" value="BIOTINYL_LIPOYL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00189">
        <property type="entry name" value="LIPOYL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51826">
        <property type="entry name" value="PSBD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="10" id="KW-0012">Acyltransferase</keyword>
    <keyword evidence="9 10" id="KW-0450">Lipoyl</keyword>
    <keyword evidence="14" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="8 10 13" id="KW-0808">Transferase</keyword>
    <keyword evidence="7 10" id="KW-0816">Tricarboxylic acid cycle</keyword>
    <feature type="domain" description="Lipoyl-binding" evidence="11">
        <location>
            <begin position="3"/>
            <end position="78"/>
        </location>
    </feature>
    <feature type="domain" description="Peripheral subunit-binding (PSBD)" evidence="12">
        <location>
            <begin position="118"/>
            <end position="155"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001267"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00004052"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00005145"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00007317"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00012945"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00019511"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022532"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00022823"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="RuleBase" id="RU361138"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="11">
        <source>
            <dbReference type="PROSITE" id="PS50968"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="12">
        <source>
            <dbReference type="PROSITE" id="PS51826"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="13">
        <source>
            <dbReference type="EMBL" id="ABX36130.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="14">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="421" mass="43583" checksum="9F283F3BD3637C3E" modified="2008-01-15" version="1">MAIVEVKVPQLSESIAEATMLTWKKKAGEAVAIDEILIEIETDKVVLEVPAPAAGVLAEIVQGDGATVVAEQLIAKIDTEGVAGVAAAAPAAAAAPAAAAPAAAPAAAAATGGSKGDVAMPAAAKLLAENNLSAANVAGSGKDGRVTKGDALAAVKGGVQSTAAVIPTGVPTKALPQVSAPAAKEDLSGRPEQRVPMSRLRARVAERLLQSQSTNAILTTFNEVNMAPVMDLRKKFQDAFTKEHGTKLGFMSFFVKAAVHALKKYPVLNASVDGNDIVYHGYFDIGIAVGSPRGLVVPILRNADQMSFADIEKKIAEFGKKAAEGKLGIEEMTGGTFSISNGGTFGSMMSTPIINPPQSAILGVHATKDRAMVENGQVVVRPMNYLAMSYDHRIIDGREAVLGLVAMKDALEDPSRLLFDL</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="72" xmlns="http://uniprot.org/uniprot">
    <accession>A9BWC1</accession>
    <name>A9BWC1_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">Exodeoxyribonuclease I</fullName>
            <ecNumber evidence="2">3.1.11.1</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="10">DNA deoxyribophosphodiesterase</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="15" type="ordered locus">Daci_3505</name>
    </gene>
    <organism evidence="15 16">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="15 16" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="16">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="16" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="16">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>Exonucleolytic cleavage in the 3'- to 5'-direction to yield nucleoside 5'-phosphates.</text>
            <dbReference type="EC" id="3.1.11.1"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="12">
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </cofactor>
        <text evidence="12">Binds 2 Mg(2+) ions per monomer.</text>
    </comment>
    <dbReference type="EC" id="3.1.11.1" evidence="2"/>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX36141.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012205341.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_3505"/>
    <dbReference type="PRIDE" id="A9BWC1"/>
    <dbReference type="EnsemblBacteria" id="ABX36141">
        <property type="protein sequence ID" value="ABX36141"/>
        <property type="gene ID" value="Daci_3505"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_3505"/>
    <dbReference type="eggNOG" id="COG2925">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_043508_1_1_4"/>
    <dbReference type="OMA" id="RDRPAQF"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000175">
        <property type="term" value="F:3'-5'-exoribonuclease activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008852">
        <property type="term" value="F:exodeoxyribonuclease I activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006281">
        <property type="term" value="P:DNA repair"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.1520.20">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.420.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023607">
        <property type="entry name" value="Exodeoxyribonuclease_I"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR034748">
        <property type="entry name" value="EXOI_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR034747">
        <property type="entry name" value="EXOI_SH3"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038649">
        <property type="entry name" value="EXOI_SH3_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013620">
        <property type="entry name" value="Exonuc_1_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013520">
        <property type="entry name" value="Exonuclease_RNaseT/DNA_pol3"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR022894">
        <property type="entry name" value="Oligoribonuclease"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012337">
        <property type="entry name" value="RNaseH-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036397">
        <property type="entry name" value="RNaseH_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11046">
        <property type="entry name" value="PTHR11046"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08411">
        <property type="entry name" value="Exonuc_X-T_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00929">
        <property type="entry name" value="RNase_T"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF000977">
        <property type="entry name" value="Exodeoxyribonuclease_I"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53098">
        <property type="entry name" value="SSF53098"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51785">
        <property type="entry name" value="EXOI_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51784">
        <property type="entry name" value="EXOI_SH3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="5" id="KW-0227">DNA damage</keyword>
    <keyword evidence="9" id="KW-0234">DNA repair</keyword>
    <keyword evidence="8" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="6 15" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="7 12" id="KW-0460">Magnesium</keyword>
    <keyword evidence="4 12" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="16" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="ExoI SH3-like" evidence="13">
        <location>
            <begin position="196"/>
            <end position="355"/>
        </location>
    </feature>
    <feature type="domain" description="ExoI C-terminal" evidence="14">
        <location>
            <begin position="357"/>
            <end position="476"/>
        </location>
    </feature>
    <feature type="binding site" evidence="12">
        <location>
            <position position="9"/>
        </location>
        <ligand>
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
            <label>1</label>
        </ligand>
    </feature>
    <feature type="binding site" evidence="11 12">
        <location>
            <position position="11"/>
        </location>
    </feature>
    <feature type="binding site" evidence="11">
        <location>
            <position position="159"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="12">
        <location>
            <position position="180"/>
        </location>
        <ligand>
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
            <label>2</label>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00000563"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00012108"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00019900"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022763"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022842"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00023204"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00031220"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="PIRSR" id="PIRSR000977-1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="12">
        <source>
            <dbReference type="PIRSR" id="PIRSR000977-2"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="13">
        <source>
            <dbReference type="PROSITE" id="PS51784"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="14">
        <source>
            <dbReference type="PROSITE" id="PS51785"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="15">
        <source>
            <dbReference type="EMBL" id="ABX36141.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="16">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="479" mass="54056" checksum="3EE9C7494BB6DF2E" modified="2008-01-15" version="1">MAHTFFWHDYETFGAQPRYDRPAQFAGIRTDAELNEIGEPVMWYCQPAGDYLPDPQSCLITGITPQQCLEQGMPEAQFAARIEAELAQAGTVGVGYNTIRFDDEITRFMFWRNLIDPYAREWQNGCGRWDLLDVVRMVYALRPEGIVWPKKEDGSPSFKLEDLARANGLLHEKAHDALSDVRATIGLARLIRKVQPRLFDFAFSLHKKDRVLQEMGLPAEPAHARPFLHVSGMIRPERGCIAVMWPLATHPTNKNEIICWDLAQDPSELASIDVDTLRLRLFSRAADLPEGMQRLPIKSIHVNKSPMVVGSLKTLSAAMAAQWGIDVEQCMGHAAIARDLPDMSALWRAVHQRPAQEGLDADQDLYGGFVGNEDRRRLNHLRSLSAQELALDRTGFDDARLTELLFRYRARNFPASLNPAERQRWLQHCAACLIEGKGGARTAEQMFAMVDQLSETADERGEEILGALYDYAEAIMPEL</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="55" xmlns="http://uniprot.org/uniprot">
    <accession>A9BWF2</accession>
    <name>A9BWF2_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Cobalamin (Vitamin B12) biosynthesis CbiX protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Daci_3536</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="4" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX36172.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012205372.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_3536"/>
    <dbReference type="PRIDE" id="A9BWF2"/>
    <dbReference type="EnsemblBacteria" id="ABX36172">
        <property type="protein sequence ID" value="ABX36172"/>
        <property type="gene ID" value="Daci_3536"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_3536"/>
    <dbReference type="eggNOG" id="COG2138">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_065901_2_2_4"/>
    <dbReference type="OMA" id="WREPFER"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016829">
        <property type="term" value="F:lyase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002762">
        <property type="entry name" value="CbiX-like"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01903">
        <property type="entry name" value="CbiX"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0456">Lyase</keyword>
    <keyword evidence="1" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023239"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ABX36172.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="137" mass="14366" checksum="6F88A65E5991955C" modified="2008-01-15" version="1">MQNDTTAAGIAGLILLAHGSRDALWRQPIEAVLGAVRQTRPHGLAACAYLEACAPDLPTAARGLVEAGATHITVLPLFLGTGKHAREDIPKLVQEIRHTYPQVAVELEPAVGEHPRVTALLAELALAAMEPSGRSGS</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="68" xmlns="http://uniprot.org/uniprot">
    <accession>A9BWW4</accession>
    <name>A9BWW4_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="8">Amino acid permease-associated region</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="8" type="ordered locus">Daci_4318</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="9" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX36949.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012206121.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_4318"/>
    <dbReference type="EnsemblBacteria" id="ABX36949">
        <property type="protein sequence ID" value="ABX36949"/>
        <property type="gene ID" value="Daci_4318"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_4318"/>
    <dbReference type="eggNOG" id="COG0833">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_007946_12_2_4"/>
    <dbReference type="OMA" id="AMFSTAN"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006865">
        <property type="term" value="P:amino acid transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0055085">
        <property type="term" value="P:transmembrane transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004841">
        <property type="entry name" value="AA-permease/SLC12A_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004840">
        <property type="entry name" value="Amoino_acid_permease_CS"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00324">
        <property type="entry name" value="AA_permease"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00218">
        <property type="entry name" value="AMINO_ACID_PERMEASE_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="5 6" id="KW-0472">Membrane</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 6" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="4 6" id="KW-1133">Transmembrane helix</keyword>
    <keyword evidence="2" id="KW-0813">Transport</keyword>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="23"/>
            <end position="44"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="50"/>
            <end position="67"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="104"/>
            <end position="126"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="132"/>
            <end position="150"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="162"/>
            <end position="183"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="203"/>
            <end position="223"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="250"/>
            <end position="271"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="296"/>
            <end position="317"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="349"/>
            <end position="370"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="376"/>
            <end position="399"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="420"/>
            <end position="440"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="452"/>
            <end position="475"/>
        </location>
    </feature>
    <feature type="domain" description="AA_permease" evidence="7">
        <location>
            <begin position="22"/>
            <end position="480"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022448"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="Pfam" id="PF00324"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="ABX36949.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="493" mass="53365" checksum="07B9E89F166EDDB3" modified="2008-01-15" version="1">MAADNSKNAAPTALRRELKARHLSMIAIGGSIGTGLFVASGATISQAGPGGALLAYMIVGLMVYFLMTSLGEMAANLPVSGSFATYGARYVDEGFGFALGWNYWYNWAVTIAVDLVAAQLVMAYWFPDGNGMLWSALFLAIMFGLNAISVKGFGEAEYWFAAIKVTTVILFIGVGVLMILGIVRGGAPEGVWGNFALWSQGDAPFAGGFSALIGVAMIVGFSFQGTELIGIAAGESENPAKNVPRAVRQVFWRILLFYVFAILVISLLIPYTDPHLLKNDLGDISVSPFTLVFERAGLLSAAAVMNAVVLTSVLSAGNSGMYASTRMLYTLACQRMAPRMFSYVNKRGVPTMALLATTVVAALCFLTNIFSPQLVYIWLLNLSGMTGFIAWLGIAISHYRFRKGFEAQGLDLNQLPYRASWFPFGPIFAFVLCMVITLGQNYEAFMADRIDWTGVVATYIGLPLFLLIWGGYRLVKGTHIVKYKDMQLGSNVD</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-01-19" version="47" xmlns="http://uniprot.org/uniprot">
    <accession>A9BX36</accession>
    <name>A9BX36_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="8">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="8" type="ordered locus">Daci_4390</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="9" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX37021.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_4390"/>
    <dbReference type="EnsemblBacteria" id="ABX37021">
        <property type="protein sequence ID" value="ABX37021"/>
        <property type="gene ID" value="Daci_4390"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_4390"/>
    <dbReference type="eggNOG" id="COG0310">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_082057_0_0_4"/>
    <dbReference type="OMA" id="MHIEPGV"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000041">
        <property type="term" value="P:transition metal ion transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002751">
        <property type="entry name" value="CbiM/NikMN"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01891">
        <property type="entry name" value="CbiM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="6 7" id="KW-0472">Membrane</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4 7" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="5 7" id="KW-1133">Transmembrane helix</keyword>
    <keyword evidence="2" id="KW-0813">Transport</keyword>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="34"/>
            <end position="60"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="103"/>
            <end position="124"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="136"/>
            <end position="161"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022448"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="ABX37021.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="182" mass="19455" checksum="7E176D8567012CC7" modified="2008-01-15" version="1">MRSVITTALVFSFFEVFPHEPVGVSEVHLILGSTLLLMFGAGAAAIGLACGLLVQGLFFAPFDLPQYGMNVTTLLVPLYAVSQLARRLIPAGTAYVDISYRQALALSTTYQGGIVLWVAFWAIYGHGASLATMTEVASFGAAYMCVVLVEPLVDLAVLWLAKRLAAFTQGPLFNTRLHAAAI</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="75" xmlns="http://uniprot.org/uniprot">
    <accession>A9BXB7</accession>
    <name>A9BXB7_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Short-chain dehydrogenase/reductase SDR</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Daci_5564</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="2" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX38193.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012207362.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_5564"/>
    <dbReference type="PRIDE" id="A9BXB7"/>
    <dbReference type="EnsemblBacteria" id="ABX38193">
        <property type="protein sequence ID" value="ABX38193"/>
        <property type="gene ID" value="Daci_5564"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_5564"/>
    <dbReference type="eggNOG" id="COG1028">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_010194_1_3_4"/>
    <dbReference type="OMA" id="DEMMEVN"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016491">
        <property type="term" value="F:oxidoreductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036291">
        <property type="entry name" value="NAD(P)-bd_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020904">
        <property type="entry name" value="Sc_DH/Rdtase_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002347">
        <property type="entry name" value="SDR_fam"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00081">
        <property type="entry name" value="GDHRDH"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00080">
        <property type="entry name" value="SDRFAMILY"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51735">
        <property type="entry name" value="SSF51735"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00061">
        <property type="entry name" value="ADH_SHORT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ABX38193.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="246" mass="25573" checksum="3852342A3EC1C6B0" modified="2008-01-15" version="1">MSTVDNKTPVTVVSGASNGIGRAIAEALLAQGRAVVNLDYVLPEWSHPLLVSYQADLTSEQATAEAAARIAAAHNVVALVNNAGATRPGTIDNASTQHLDDVVGLHLRAPMLLVQAFLPTLRACGEGRIVNMSSRAALGKPDRIVYSATKAGLIGLTRTLAMELGRDRITVNALGPGPIATELFTKSNPEGAPQTQRILNSIAVGRMGTPEDVARAALFFLSPDNGFVTGQVLYICGGTTLGVAPV</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="55" xmlns="http://uniprot.org/uniprot">
    <accession>A9BXL0</accession>
    <name>A9BXL0_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Daci_5658</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="2" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX38286.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012207455.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_5658"/>
    <dbReference type="PRIDE" id="A9BXL0"/>
    <dbReference type="EnsemblBacteria" id="ABX38286">
        <property type="protein sequence ID" value="ABX38286"/>
        <property type="gene ID" value="Daci_5658"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_5658"/>
    <dbReference type="eggNOG" id="COG3558">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_112790_0_0_4"/>
    <dbReference type="OMA" id="WNTELDY"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009783">
        <property type="entry name" value="DUF1348"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR032710">
        <property type="entry name" value="NTF2-like_dom_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR31757">
        <property type="entry name" value="PTHR31757"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07080">
        <property type="entry name" value="DUF1348"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54427">
        <property type="entry name" value="SSF54427"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ABX38286.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="155" mass="18360" checksum="25A42019188AE2CE" modified="2008-01-15" version="1">METRPPLPPFSLASAVQKVRLAEDGWNTRDAAKVAMAYTPDTKWRNRAEFANSRAEAQALLERKWKKELDYRLIKELWLYGENRIAVRYAYEWHDDAGNWFRSYGNENWEFEADGLMRRRFACINDMPIQESERKFHWPLGRRPDDHPGLSDLGL</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="65" xmlns="http://uniprot.org/uniprot">
    <accession>A9BXP5</accession>
    <name>A9BXP5_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="11">Type II secretion system protein K</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="12" type="ordered locus">Daci_5693</name>
    </gene>
    <organism evidence="12 13">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="12 13" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="13">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="13" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="13">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="2 11">Cell inner membrane</location>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="1">Membrane</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="3 11">Belongs to the GSP K family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX38321.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012207490.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_5693"/>
    <dbReference type="PRIDE" id="A9BXP5"/>
    <dbReference type="EnsemblBacteria" id="ABX38321">
        <property type="protein sequence ID" value="ABX38321"/>
        <property type="gene ID" value="Daci_5693"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_5693"/>
    <dbReference type="eggNOG" id="COG3156">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_057294_1_1_4"/>
    <dbReference type="OMA" id="THYFLVY"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009306">
        <property type="term" value="P:protein secretion"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005628">
        <property type="entry name" value="GspK"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038072">
        <property type="entry name" value="GspK_central_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045584">
        <property type="entry name" value="Pilin-like"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03934">
        <property type="entry name" value="T2SSK"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF002786">
        <property type="entry name" value="XcpX"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF158544">
        <property type="entry name" value="SSF158544"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54523">
        <property type="entry name" value="SSF54523"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="6 11" id="KW-0997">Cell inner membrane</keyword>
    <keyword evidence="5 11" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="10 11" id="KW-0472">Membrane</keyword>
    <keyword evidence="8" id="KW-0653">Protein transport</keyword>
    <keyword evidence="13" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="7" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="9" id="KW-1133">Transmembrane helix</keyword>
    <keyword evidence="4 11" id="KW-0813">Transport</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004370"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00004533"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00007246"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022448"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022519"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00022927"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="PIRNR" id="PIRNR002786"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="EMBL" id="ABX38321.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="13">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="325" mass="36126" checksum="1661D97EF1578FC9" modified="2008-01-15" version="1">MMRTPRLLPGRRLHRGVALLAAMLTVTLVATFAATALWQQWRSVEVETAERNRMQAAWILLGALDWSRVVLAEDARTSLQVDHLAEPWAVPLQEARLSTFLAAQNNVSQVDDGMADMQDAFLSGQIIDLQSRLNLRNLLSAPDKPETLRPLSRLLERLNLPPAYATQIVQALRAAATPGEGAQFLMPRTLRQFGWLGLPPEVVARLEPYITLLPENTPVNLNTASAEVIWASVEDLTWSQASQLVQLRASRPLRSLADASNALGLPQKFEGQNLSVATSFFEARGRMRLGEIVASERSMLRRNNMTVTTIWRERGDWGLPEAPAP</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2021-06-02" version="45" xmlns="http://uniprot.org/uniprot">
    <accession>A9BXT9</accession>
    <name>A9BXT9_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_5737</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX38365.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012207534.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_5737"/>
    <dbReference type="EnsemblBacteria" id="ABX38365">
        <property type="protein sequence ID" value="ABX38365"/>
        <property type="gene ID" value="Daci_5737"/>
    </dbReference>
    <dbReference type="GeneID" id="60690100"/>
    <dbReference type="KEGG" id="dac:Daci_5737"/>
    <dbReference type="eggNOG" id="ENOG5033DT8">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_166677_0_0_4"/>
    <dbReference type="OMA" id="RESDVNH"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025421">
        <property type="entry name" value="DUF4148"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13663">
        <property type="entry name" value="DUF4148"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="1">
        <location>
            <begin position="1"/>
            <end position="24"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5002735196" evidence="1">
        <location>
            <begin position="25"/>
            <end position="119"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX38365.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="119" mass="12706" checksum="62AE94E3FBB5A645" modified="2008-01-15" version="1">MKHAKTLFAIVSLSSALWSGMASAAPAATVSAETWFGAEPVASGPALSRAEVQADLALWNRAGLNVYRESDVNHWDADYQQRLAQYQRMRSGPEYLAEVQRLGGSVKAAEGQGSGRVPG</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="51" xmlns="http://uniprot.org/uniprot">
    <accession>A9BXV7</accession>
    <name>A9BXV7_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Fatty acid hydroxylase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Daci_1248</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="4" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX33892.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_1248"/>
    <dbReference type="PRIDE" id="A9BXV7"/>
    <dbReference type="EnsemblBacteria" id="ABX33892">
        <property type="protein sequence ID" value="ABX33892"/>
        <property type="gene ID" value="Daci_1248"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_1248"/>
    <dbReference type="eggNOG" id="COG3000">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_1041725_0_0_4"/>
    <dbReference type="OMA" id="WIAYIAF"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005506">
        <property type="term" value="F:iron ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016491">
        <property type="term" value="F:oxidoreductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008610">
        <property type="term" value="P:lipid biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006694">
        <property type="entry name" value="Fatty_acid_hydroxylase"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04116">
        <property type="entry name" value="FA_hydroxylase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="20"/>
            <end position="37"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="49"/>
            <end position="69"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="89"/>
            <end position="109"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="146"/>
            <end position="162"/>
        </location>
    </feature>
    <feature type="domain" description="Fatty acid hydroxylase" evidence="2">
        <location>
            <begin position="95"/>
            <end position="230"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF04116"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ABX33892.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="281" mass="32805" checksum="A687DFCFA1240497" modified="2008-01-15" version="1">MDMLTDFLNDFNNVLSALKAWWPVLAVATFLEILKPGKKSHWPTILSNIIYLPLGLAIGATALSSVIPFLEAYIPTDILQARKWAHTPIRQILLWIAYIAFFDFLYYWLHRAQHQIPFLWRYHMVHHSDVNTSATTVGRHHWLEEGFRFFIITAPLIFLMGGTKNMPLWVAILMSLNGIFMHWNVSFRFGILEKIIITPAYHRIHHSIEEHHYDRNFGVFTQMWDRIFLTRHLPSPEEFPVTGISGLSHIRSWALLLPWPIVLSERKSIPREAAKPHEAID</sequence>
</entry>
<entry dataset="Swiss-Prot" created="2009-03-24" modified="2022-08-03" version="70" xmlns="http://uniprot.org/uniprot">
    <accession>A9BXZ7</accession>
    <name>SYGA_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Glycine--tRNA ligase alpha subunit</fullName>
            <ecNumber evidence="1">6.1.1.14</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="1">Glycyl-tRNA synthetase alpha subunit</fullName>
            <shortName evidence="1">GlyRS</shortName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="1" type="primary">glyQ</name>
        <name type="ordered locus">Daci_1288</name>
    </gene>
    <organism>
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference key="1">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain>DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>ATP + glycine + tRNA(Gly) = AMP + diphosphate + glycyl-tRNA(Gly)</text>
            <dbReference type="Rhea" id="RHEA:16013"/>
            <dbReference type="Rhea" id="RHEA-COMP:9664"/>
            <dbReference type="Rhea" id="RHEA-COMP:9683"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:33019"/>
            <dbReference type="ChEBI" id="CHEBI:57305"/>
            <dbReference type="ChEBI" id="CHEBI:78442"/>
            <dbReference type="ChEBI" id="CHEBI:78522"/>
            <dbReference type="ChEBI" id="CHEBI:456215"/>
            <dbReference type="EC" id="6.1.1.14"/>
        </reaction>
    </comment>
    <comment type="subunit">
        <text evidence="1">Tetramer of two alpha and two beta subunits.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="1">Belongs to the class-II aminoacyl-tRNA synthetase family.</text>
    </comment>
    <dbReference type="EC" id="6.1.1.14" evidence="1"/>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX33932.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012203218.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A9BXZ7"/>
    <dbReference type="SMR" id="A9BXZ7"/>
    <dbReference type="STRING" id="398578.Daci_1288"/>
    <dbReference type="PRIDE" id="A9BXZ7"/>
    <dbReference type="EnsemblBacteria" id="ABX33932">
        <property type="protein sequence ID" value="ABX33932"/>
        <property type="gene ID" value="Daci_1288"/>
    </dbReference>
    <dbReference type="GeneID" id="60685848"/>
    <dbReference type="KEGG" id="dac:Daci_1288"/>
    <dbReference type="eggNOG" id="COG0752">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_057066_1_0_4"/>
    <dbReference type="OMA" id="SYYQFQV"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004820">
        <property type="term" value="F:glycine-tRNA ligase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006426">
        <property type="term" value="P:glycyl-tRNA aminoacylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd00733">
        <property type="entry name" value="GlyRS_alpha_core"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.930.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00254">
        <property type="entry name" value="Gly_tRNA_synth_alpha"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045864">
        <property type="entry name" value="aa-tRNA-synth_II/BPL/LPL"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006194">
        <property type="entry name" value="Gly-tRNA-synth_heterodimer"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002310">
        <property type="entry name" value="Gly-tRNA_ligase_asu"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02091">
        <property type="entry name" value="tRNA-synt_2e"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR01044">
        <property type="entry name" value="TRNASYNTHGA"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55681">
        <property type="entry name" value="SSF55681"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00388">
        <property type="entry name" value="glyQ"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50861">
        <property type="entry name" value="AA_TRNA_LIGASE_II_GLYAB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword id="KW-0030">Aminoacyl-tRNA synthetase</keyword>
    <keyword id="KW-0067">ATP-binding</keyword>
    <keyword id="KW-0963">Cytoplasm</keyword>
    <keyword id="KW-0436">Ligase</keyword>
    <keyword id="KW-0547">Nucleotide-binding</keyword>
    <keyword id="KW-0648">Protein biosynthesis</keyword>
    <keyword id="KW-1185">Reference proteome</keyword>
    <feature type="chain" id="PRO_1000101182" description="Glycine--tRNA ligase alpha subunit">
        <location>
            <begin position="1"/>
            <end position="312"/>
        </location>
    </feature>
    <evidence type="ECO:0000255" key="1">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00254"/>
        </source>
    </evidence>
    <sequence length="312" mass="35062" checksum="FA73BCCC79F9E615" modified="2008-01-15" version="1">MLTFQQIILKLQSYWADQGCALLQPYDMEVGAGTSHTATFLRALGPEPWKAAYVQPSRRPKDGRYGDNPNRLQHYYQFQVVLKPAPDNILELYLGSLEALGFDLKKNDIRFVEDDWENPTLGAWGLGWEVWLNGMEVTQFTYFQQVGGIDCKPATGEITYGLERLAMYLQGVDNVYNLTWTDGLSYGDVYHQNEVEQSTYNFEHSDADFLFTAFGAYEKQANHLIGEQLALPAYEQVLKAAHTFNLLDARGAISVTERAAYIGRIRNLARAVAKAYMDSRARLGFPMAPKAHADEVLAELAKAAEQQGKKAA</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="78" xmlns="http://uniprot.org/uniprot">
    <accession>A9BY45</accession>
    <name>A9BY45_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Transcriptional regulator, TetR family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ordered locus">Daci_1336</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="5" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX33980.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012203266.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_1336"/>
    <dbReference type="PRIDE" id="A9BY45"/>
    <dbReference type="EnsemblBacteria" id="ABX33980">
        <property type="protein sequence ID" value="ABX33980"/>
        <property type="gene ID" value="Daci_1336"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_1336"/>
    <dbReference type="eggNOG" id="COG1309">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_069356_4_0_4"/>
    <dbReference type="OMA" id="VIREYHT"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009057">
        <property type="entry name" value="Homeobox-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001647">
        <property type="entry name" value="HTH_TetR"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036271">
        <property type="entry name" value="Tet_transcr_reg_TetR-rel_C_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00440">
        <property type="entry name" value="TetR_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00455">
        <property type="entry name" value="HTHTETR"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46689">
        <property type="entry name" value="SSF46689"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48498">
        <property type="entry name" value="SSF48498"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50977">
        <property type="entry name" value="HTH_TETR_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HTH tetR-type" evidence="3">
        <location>
            <begin position="43"/>
            <end position="103"/>
        </location>
    </feature>
    <feature type="DNA-binding region" description="H-T-H motif" evidence="1">
        <location>
            <begin position="66"/>
            <end position="85"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="1"/>
            <end position="42"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00335"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="PROSITE" id="PS50977"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="ABX33980.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="235" mass="25785" checksum="6D9C4C6FC4C7A33B" modified="2008-01-15" version="1">MSSVSAPRRTTRLTADATADPKAGSSVHEAAAPAPRRALHKGQQTKATIVEAALNLATHIGLEGLSIGALAELTGMSKSGVFAHFGSREELQISVVHEYHDRFEQEVFFPALQAPRGVARLRALFDNWMKRTSIELDSGCIYISGAVEFDDRTGPVRDALTASVQTWHAAMRRTIVQCRESGDLRADLDENQLLFEIHGLILALHYEARFLRNEGSMQRAIDGFESILARYASPA</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="37" xmlns="http://uniprot.org/uniprot">
    <accession>A9BYF4</accession>
    <name>A9BYF4_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_1650</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX34293.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012203578.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_1650"/>
    <dbReference type="PRIDE" id="A9BYF4"/>
    <dbReference type="EnsemblBacteria" id="ABX34293">
        <property type="protein sequence ID" value="ABX34293"/>
        <property type="gene ID" value="Daci_1650"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_1650"/>
    <dbReference type="eggNOG" id="ENOG502ZMZ2">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_1934596_0_0_4"/>
    <dbReference type="OMA" id="LWPLSAH"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="22"/>
            <end position="44"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="56"/>
            <end position="81"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX34293.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="131" mass="13652" checksum="94F9AC326B8A774D" modified="2008-01-15" version="1">MNQLEPTNVAIALASVLFGPTLAALVGPYAVILIASTVGAAWALGRRDPSARLGAAGYFLRLNVTALLVTVGLATLAGRWLGFDETNWMLAPIALLVGGVGDDWPRLGRWVFERAARVLERKAGGGEGGAP</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-05-25" version="81" xmlns="http://uniprot.org/uniprot">
    <accession>A9BYJ0</accession>
    <name>A9BYJ0_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Transcriptional regulator, LysR family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Daci_1893</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="4" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the LysR transcriptional regulatory family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX34533.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012203818.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_1893"/>
    <dbReference type="EnsemblBacteria" id="ABX34533">
        <property type="protein sequence ID" value="ABX34533"/>
        <property type="gene ID" value="Daci_1893"/>
    </dbReference>
    <dbReference type="GeneID" id="60686315"/>
    <dbReference type="KEGG" id="dac:Daci_1893"/>
    <dbReference type="eggNOG" id="COG0583">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_039613_6_4_4"/>
    <dbReference type="OMA" id="SHDLTMK"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003700">
        <property type="term" value="F:DNA-binding transcription factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd08451">
        <property type="entry name" value="PBP2_BudR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037410">
        <property type="entry name" value="BudR_PBP2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005119">
        <property type="entry name" value="LysR_subst-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000847">
        <property type="entry name" value="Tscrpt_reg_HTH_LysR"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036390">
        <property type="entry name" value="WH_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00126">
        <property type="entry name" value="HTH_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03466">
        <property type="entry name" value="LysR_substrate"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00039">
        <property type="entry name" value="HTHLYSR"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46785">
        <property type="entry name" value="SSF46785"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50931">
        <property type="entry name" value="HTH_LYSR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HTH lysR-type" evidence="2">
        <location>
            <begin position="1"/>
            <end position="58"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00009437"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS50931"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ABX34533.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="309" mass="33418" checksum="63C134E21DD738A3" modified="2008-01-15" version="1">MELRHLRYFLAVADTGHITRAAELLGMQQPPLSQQIRALEEELGIALFRRHPKGVDLTDAGLELQGEATRLLADFTAMRDRMQAFARGERGRIHVGFTSSAAAHAFTPEVLRLCRGRHPDIALDVSENNAAEITEAVQAGRMHCGFLRVPVARPEGLVFETLLQEPALLAIPVDHRLARDASRPVALRQLDGERLILVRRTGAPGLYANLLALCARHKVQVEVAAEVERMMTNVNLVAAGVGLSIVPASVRGAHPEAVVYRAFEPAVRLSAPLTLVHREAGTETGGAGPAATFIALARELAQRHQAPGG</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-01-19" version="46" xmlns="http://uniprot.org/uniprot">
    <accession>A9BYR1</accession>
    <name>A9BYR1_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_1964</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX34604.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012203889.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_1964"/>
    <dbReference type="EnsemblBacteria" id="ABX34604">
        <property type="protein sequence ID" value="ABX34604"/>
        <property type="gene ID" value="Daci_1964"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_1964"/>
    <dbReference type="eggNOG" id="ENOG50330T3">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_133076_0_0_4"/>
    <dbReference type="OMA" id="WRPAIGW"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR021497">
        <property type="entry name" value="GTA_holin_3TM"/>
    </dbReference>
    <dbReference type="Pfam" id="PF11351">
        <property type="entry name" value="GTA_holin_3TM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="73"/>
            <end position="99"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX34604.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="147" mass="15737" checksum="69EAB2F108825A0D" modified="2008-01-15" version="1">MNPIILGGIVDAIGKIADDLFTSDKERLDAQIELQKVSIEAAKIDASLATGQMEVNKAEATNASLFVAGWRPAIGWVGAASMLYQFLIYPFLVWAWALMQAKGWVPVTMSAPPMLEAESLWVILSGMLGIASLRTVEKVKSAGASKG</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="47" xmlns="http://uniprot.org/uniprot">
    <accession>A9BYS5</accession>
    <name>A9BYS5_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Daci_2180</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="2" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX34820.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012204103.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_2180"/>
    <dbReference type="PRIDE" id="A9BYS5"/>
    <dbReference type="EnsemblBacteria" id="ABX34820">
        <property type="protein sequence ID" value="ABX34820"/>
        <property type="gene ID" value="Daci_2180"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_2180"/>
    <dbReference type="eggNOG" id="COG0456">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_154671_1_0_4"/>
    <dbReference type="OMA" id="MAWDFVM"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR021969">
        <property type="entry name" value="DUF3579"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12112">
        <property type="entry name" value="DUF3579"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ABX34820.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="105" mass="11780" checksum="E5033C90A46B89A3" modified="2008-01-15" version="1">MVSPSSKELFIQGITHEGKTFRPSDWAERLAGVMSQFRPGGAQRGSHLSYSPWCVPTTLNGVKCVVVHRDLRDYEPMAWDFCLNFAKDNNLQVAEACLIPDEPAR</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="77" xmlns="http://uniprot.org/uniprot">
    <accession>A9BYY0</accession>
    <name>A9BYY0_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="4 5">Flagellar transcriptional regulator FlhC</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="4" type="primary">flhC</name>
        <name evidence="6" type="ordered locus">Daci_2235</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="7" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="4">Functions in complex with FlhD as a master transcriptional regulator that regulates transcription of several flagellar and non-flagellar operons by binding to their promoter region. Activates expression of class 2 flagellar genes, including fliA, which is a flagellum-specific sigma factor that turns on the class 3 genes. Also regulates genes whose products function in a variety of physiological pathways.</text>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="4">
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </cofactor>
        <text evidence="4">Binds 1 zinc ion per subunit.</text>
    </comment>
    <comment type="subunit">
        <text evidence="4">Heterohexamer composed of two FlhC and four FlhD subunits. Each FlhC binds a FlhD dimer, forming a heterotrimer, and a hexamer assembles by dimerization of two heterotrimers.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="4 5">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="4 5">Belongs to the FlhC family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX34875.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012204158.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_2235"/>
    <dbReference type="PRIDE" id="A9BYY0"/>
    <dbReference type="EnsemblBacteria" id="ABX34875">
        <property type="protein sequence ID" value="ABX34875"/>
        <property type="gene ID" value="Daci_2235"/>
    </dbReference>
    <dbReference type="GeneID" id="60686629"/>
    <dbReference type="KEGG" id="dac:Daci_2235"/>
    <dbReference type="eggNOG" id="ENOG502Z927">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_122824_0_0_4"/>
    <dbReference type="OMA" id="MLQLSAC"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008270">
        <property type="term" value="F:zinc ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0044781">
        <property type="term" value="P:bacterial-type flagellum organization"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0045893">
        <property type="term" value="P:positive regulation of transcription, DNA-templated"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:1902208">
        <property type="term" value="P:regulation of bacterial-type flagellum assembly"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01891">
        <property type="entry name" value="FhlC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007944">
        <property type="entry name" value="FlhC"/>
    </dbReference>
    <dbReference type="Pfam" id="PF05280">
        <property type="entry name" value="FlhC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF003159">
        <property type="entry name" value="FlhC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4 5" id="KW-0010">Activator</keyword>
    <keyword evidence="3 4 5" id="KW-1005">Bacterial flagellum biogenesis</keyword>
    <keyword evidence="6" id="KW-0966">Cell projection</keyword>
    <keyword evidence="6" id="KW-0969">Cilium</keyword>
    <keyword evidence="1 4 5" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="4 5" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="6" id="KW-0282">Flagellum</keyword>
    <keyword evidence="2 4" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4 5" id="KW-0804">Transcription</keyword>
    <keyword evidence="4 5" id="KW-0805">Transcription regulation</keyword>
    <keyword evidence="4" id="KW-0862">Zinc</keyword>
    <feature type="binding site" evidence="4">
        <location>
            <position position="139"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="4">
        <location>
            <position position="142"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="4">
        <location>
            <position position="159"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="4">
        <location>
            <position position="162"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022490"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022795"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01891"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="PIRNR" id="PIRNR003159"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="ABX34875.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="180" mass="20540" checksum="CD1E367E0FBD3D27" modified="2008-01-15" version="1">MSTPAKSVLNESKQIERAAMLIEMGARMQVLESETTLSYERLIRLYKEIAGKSPSKGQLPFSTDWFLTWQENIHSSLFLNIYEYLSKGAELDAVEQLTKAYRLYTEQIQAAELEALLSFTRAWRLVKFVDAQMLTRTQCTVCKGQFVTEPYENERHYQCGLCNPPARAGKSKSAGSLMLH</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="46" xmlns="http://uniprot.org/uniprot">
    <accession>A9BZ69</accession>
    <name>A9BZ69_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_2531</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX35169.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012204448.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_2531"/>
    <dbReference type="PRIDE" id="A9BZ69"/>
    <dbReference type="EnsemblBacteria" id="ABX35169">
        <property type="protein sequence ID" value="ABX35169"/>
        <property type="gene ID" value="Daci_2531"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_2531"/>
    <dbReference type="eggNOG" id="ENOG502ZC6N">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_058037_0_0_4"/>
    <dbReference type="OMA" id="YLLEWAL"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025368">
        <property type="entry name" value="DUF4272"/>
    </dbReference>
    <dbReference type="Pfam" id="PF14094">
        <property type="entry name" value="DUF4272"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="39"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="23"/>
            <end position="39"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX35169.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="392" mass="43527" checksum="3D41E6A45F120895" modified="2008-01-15" version="1">MKNLLTRLKTAFSKPAPEPARQQEHPQNEHQPHEPQSDAAEDEVLINAYCTVWDLPALDFAHTLAGRRDLADPELAPHLSGFVGYVLGRGDGQMTRNRYHAMRHIQRVQQHLSLGIAPAQLDAFAGWAQRANAIAFLTDGSIRDPQGRILLDASGAEPDDQAALPYPRQAWQRKQRSEQVLAQRGFTPAASLPPLISEPELRMRAPDEIAARAFALLAVAVRAESLNDALNETLNSGEPLTPEQLFQRLPAAQAALTPNEREFMATAQPSEEAIAKFGWRYEAAYLLEWALGLVDALPFPDAICDVPLTSRTLLQAGDLQGALHAARMRPDSEILDALDQHYRLHWIVRQAQVQQQPAPAGLNADVLMERHHALNWLVLFEGNDWDDVDTPT</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="47" xmlns="http://uniprot.org/uniprot">
    <accession>A9BZ73</accession>
    <name>A9BZ73_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_2535</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX35173.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012204452.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_2535"/>
    <dbReference type="PRIDE" id="A9BZ73"/>
    <dbReference type="EnsemblBacteria" id="ABX35173">
        <property type="protein sequence ID" value="ABX35173"/>
        <property type="gene ID" value="Daci_2535"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_2535"/>
    <dbReference type="eggNOG" id="ENOG502ZNVE">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_104091_0_0_4"/>
    <dbReference type="OMA" id="PEQYERE"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="21"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX35173.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="247" mass="26943" checksum="CA79FE7730640058" modified="2008-01-15" version="1">MQNSNLTPEQYEREIPLEPGSPGQRLISGLLFDGHWQYRRRAEAGKTSWTQLPMASDLAGPADPYGTWWCVRRCAVVLEQHHWLFLRLPVHLPPLPGVEELAQILDVLLPDWDVQAPAECARTPLLCAQAVEQGGSALLMLESPECEGPKPGIFWAWVVGYEPELPLSCTDDCVASDTLPSPDAQAMAPPKALLALPFGSTLPWSSGYATRIQVQADGTCLLHDAGGPWHPCQWLGTVTLAARPAPA</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="41" xmlns="http://uniprot.org/uniprot">
    <accession>A9BZ74</accession>
    <name>A9BZ74_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Daci_2536</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="2" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX35174.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012204453.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_2536"/>
    <dbReference type="PRIDE" id="A9BZ74"/>
    <dbReference type="EnsemblBacteria" id="ABX35174">
        <property type="protein sequence ID" value="ABX35174"/>
        <property type="gene ID" value="Daci_2536"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_2536"/>
    <dbReference type="eggNOG" id="ENOG502ZNVE">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_104091_0_0_4"/>
    <dbReference type="OMA" id="GRAYWAR"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ABX35174.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="232" mass="25298" checksum="78C19F407C450A39" modified="2008-01-15" version="1">MDETTHLTHRFTRGLRFDGLWTYSALTPSGRAYWARLPATRAGGMAAADPQRAWWCVRQCVAVLNRRPWRSAHLPSGLPAQPECGDVALALGAMLAGWNVKVLDEPSTQAPLLRSTDALLAGGCSLLQLQAEDSSDGVQAVFWAWVIGVEMHERFQRAKRISAFDMPGRPGALLIWPFGSPLAWNHALRVTVDGEGLCDVDGLDARASRYRCTAAITLEPLSNDIAINGSFS</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="44" xmlns="http://uniprot.org/uniprot">
    <accession>A9BZD1</accession>
    <name>A9BZD1_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Daci_2893</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="2" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX35531.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_2893"/>
    <dbReference type="PRIDE" id="A9BZD1"/>
    <dbReference type="EnsemblBacteria" id="ABX35531">
        <property type="protein sequence ID" value="ABX35531"/>
        <property type="gene ID" value="Daci_2893"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_2893"/>
    <dbReference type="eggNOG" id="ENOG5030DUI">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_061770_0_0_4"/>
    <dbReference type="OMA" id="WQYQNVA"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023977">
        <property type="entry name" value="CHP04052"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR04052">
        <property type="entry name" value="AZL_007920_fam"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ABX35531.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="342" mass="35565" checksum="4A15AF904CCFC444" modified="2008-01-15" version="1">MPSRDPCRSLQGYPRLRAAMAAQAPRNRFPMRTTYFDNSRFPLALIATALPLLLAACGGGGGGDNSQPTTPTGPQAVALEFAAKAGNLPAKCGTPIAGMGTTQATVDLHDLRFYVSGVSLINDKGEAVAVTLDVNDWQTKEVTLIDLEDGTGACADAGTQAQNTQVRGTVPAGTYKGIRMTVGVPSSVNHTDYAVAPKPLDMQALAWSWQAGRKFAQIEVNPVGGVARPAPAAPGKTFYVHLGSTGCTGNPVTGETVSCARADRMDFGFGDFNAGTQKVVLDIAQLLQGSNVKEDLGGAAGCMSGATDPECVPIFSALRIDLTTGRSINEGSGQTVFRTEAK</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="63" xmlns="http://uniprot.org/uniprot">
    <accession>A9BZF8</accession>
    <name>A9BZF8_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="6">Porin Gram-negative type</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ordered locus">Daci_2920</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="7" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX35558.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012204768.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_2920"/>
    <dbReference type="PRIDE" id="A9BZF8"/>
    <dbReference type="EnsemblBacteria" id="ABX35558">
        <property type="protein sequence ID" value="ABX35558"/>
        <property type="gene ID" value="Daci_2920"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_2920"/>
    <dbReference type="eggNOG" id="COG3203">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_038238_1_0_4"/>
    <dbReference type="OMA" id="AAWRYDT"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046930">
        <property type="term" value="C:pore complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015288">
        <property type="term" value="F:porin activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006811">
        <property type="term" value="P:ion transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd00342">
        <property type="entry name" value="gram_neg_porins"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.160.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR033900">
        <property type="entry name" value="Gram_neg_porin_domain"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023614">
        <property type="entry name" value="Porin_dom_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13609">
        <property type="entry name" value="Porin_4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0406">Ion transport</keyword>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-0626">Porin</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4" id="KW-0732">Signal</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1134">Transmembrane beta strand</keyword>
    <keyword evidence="3" id="KW-0813">Transport</keyword>
    <feature type="signal peptide" evidence="4">
        <location>
            <begin position="1"/>
            <end position="20"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5002732690" evidence="4">
        <location>
            <begin position="21"/>
            <end position="342"/>
        </location>
    </feature>
    <feature type="domain" description="Porin_4" evidence="5">
        <location>
            <begin position="7"/>
            <end position="324"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022452"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023065"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023114"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="Pfam" id="PF13609"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="ABX35558.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="342" mass="36183" checksum="249C6A90C6F6839A" modified="2008-01-15" version="1">MKRSFIAMAAALACAGAAHAQSSVQLTGLVDAYAGSMRMAGDASGKGVVGSGGMTTSWWGMKGQEDLGGGLKVDFQLTVFMRVDTGSPGRFDGDPYFSRDANVGLSGGFGTVRLGRGMAPNFLPTILTNPFGDSFTISPLVLHANVGTTAWGSANLTTPSDTGWSNQVVYTTPKFGGLQANVHYQFGEKGGDSGKKNIGVNAMYFGGPLSLVAFYERAQISNPVSLAVMPTKTDWMLGGTYNFEVAKLYATYGQAKVKDLDRKNSTYSLGLDVPVTSAGTIKAALARTKAEIGAVDSTRTTASLGYDHYLSKRTDVYTVLMHDRITDLKSGTSLIAGIRHRF</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="87" xmlns="http://uniprot.org/uniprot">
    <accession>A9BZG0</accession>
    <name>A9BZG0_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">Histidine kinase</fullName>
            <ecNumber evidence="2">2.7.13.3</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="11" type="ordered locus">Daci_2922</name>
    </gene>
    <organism evidence="11 12">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="11 12" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="12">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="12" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="12">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>ATP + protein L-histidine = ADP + protein N-phospho-L-histidine.</text>
            <dbReference type="EC" id="2.7.13.3"/>
        </reaction>
    </comment>
    <dbReference type="EC" id="2.7.13.3" evidence="2"/>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX35560.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012204770.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_2922"/>
    <dbReference type="PRIDE" id="A9BZG0"/>
    <dbReference type="EnsemblBacteria" id="ABX35560">
        <property type="protein sequence ID" value="ABX35560"/>
        <property type="gene ID" value="Daci_2922"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_2922"/>
    <dbReference type="eggNOG" id="COG0784">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="eggNOG" id="COG2205">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="eggNOG" id="COG4191">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_000445_94_0_4"/>
    <dbReference type="OMA" id="FYGIGMT"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000155">
        <property type="term" value="F:phosphorelay sensor kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd00082">
        <property type="entry name" value="HisKA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.565.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011006">
        <property type="entry name" value="CheY-like_superfamily"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003594">
        <property type="entry name" value="HATPase_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036890">
        <property type="entry name" value="HATPase_C_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005467">
        <property type="entry name" value="His_kinase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003661">
        <property type="entry name" value="HisK_dim/P"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036097">
        <property type="entry name" value="HisK_dim/P_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035965">
        <property type="entry name" value="PAS-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029151">
        <property type="entry name" value="Sensor-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004358">
        <property type="entry name" value="Sig_transdc_His_kin-like_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001789">
        <property type="entry name" value="Sig_transdc_resp-reg_receiver"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02518">
        <property type="entry name" value="HATPase_c"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00512">
        <property type="entry name" value="HisKA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00072">
        <property type="entry name" value="Response_reg"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00344">
        <property type="entry name" value="BCTRLSENSOR"/>
    </dbReference>
    <dbReference type="SMART" id="SM00387">
        <property type="entry name" value="HATPase_c"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00388">
        <property type="entry name" value="HisKA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00448">
        <property type="entry name" value="REC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF103190">
        <property type="entry name" value="SSF103190"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47384">
        <property type="entry name" value="SSF47384"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52172">
        <property type="entry name" value="SSF52172"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55785">
        <property type="entry name" value="SSF55785"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55874">
        <property type="entry name" value="SSF55874"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50109">
        <property type="entry name" value="HIS_KIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50110">
        <property type="entry name" value="RESPONSE_REGULATORY"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="8" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="11" id="KW-0418">Kinase</keyword>
    <keyword evidence="6" id="KW-0472">Membrane</keyword>
    <keyword evidence="4 7" id="KW-0597">Phosphoprotein</keyword>
    <keyword evidence="12" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="11" id="KW-0808">Transferase</keyword>
    <keyword evidence="5" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="6" id="KW-1133">Transmembrane helix</keyword>
    <feature type="domain" description="Histidine kinase" evidence="9">
        <location>
            <begin position="526"/>
            <end position="738"/>
        </location>
    </feature>
    <feature type="domain" description="Response regulatory" evidence="10">
        <location>
            <begin position="764"/>
            <end position="879"/>
        </location>
    </feature>
    <feature type="coiled-coil region" evidence="8">
        <location>
            <begin position="478"/>
            <end position="519"/>
        </location>
    </feature>
    <feature type="modified residue" description="4-aspartylphosphate" evidence="7">
        <location>
            <position position="814"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00000085"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00012438"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022553"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00169"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="9">
        <source>
            <dbReference type="PROSITE" id="PS50109"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="10">
        <source>
            <dbReference type="PROSITE" id="PS50110"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="EMBL" id="ABX35560.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="883" mass="97833" checksum="D08694F9210AE0E0" modified="2008-01-15" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="64" xmlns="http://uniprot.org/uniprot">
    <accession>A9BZI6</accession>
    <name>A9BZI6_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="6">Tetratricopeptide TPR_2 repeat protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ordered locus">Daci_2948</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
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            <authorList>
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                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
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            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
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                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
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                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
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            <strain evidence="7">DSM 14801 / SPH-1</strain>
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    <sequence length="608" mass="65881" checksum="53FB74049CEE7213" modified="2008-01-15" version="1"> </sequence>
</entry>
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            <strain evidence="8">DSM 14801 / SPH-1</strain>
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        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
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                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
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                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
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        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
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</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="59" xmlns="http://uniprot.org/uniprot">
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        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
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    <reference evidence="4" key="2">
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                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
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                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
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    <dbReference type="EnsemblBacteria" id="ABX35946">
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            <dbReference type="SAM" id="SignalP"/>
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    </evidence>
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        <source>
            <dbReference type="EMBL" id="ABX35946.1"/>
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    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="411" mass="45058" checksum="E3F72D5EF4FAE9E4" modified="2008-01-15" version="1">MKWIVHSVAASAMLACASGAWAQKGETVKIGWIDPLSGLMAAVGTNQLKTFQLMAEEFNRKNASGVKFEIIPLDNKLSPQETTAVLRSAMDQGARYVVQGNGSGPALAIMDALEKHNARNKGKEVVYLNYAAVDPDLTNSKCSYWHFRLDADTSMKMEALTTYMKDVPEVKKVYLINQNYSHGQQVSKYAKEMLKAKRPDVQVVGDDFAPLAQVRDFAPYIAKIKQSGADTVITGNWGSDLSLLLKAANDAGLNNVKFYTYYAFGSGSPTAMGAASDGKVYTVGYGHYNMGGPIQPLMAEFKKKMNDDLTQSSIYHVFALLDAAFVKTGGTDPVKVAAALEGMKLKSFNGEVEMRKTDHQLQQGLYITRWEKAGGKNPYDAENTGYTFAPVKYYEPYVASTPTSCQMKRPS</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="53" xmlns="http://uniprot.org/uniprot">
    <accession>A9BZR1</accession>
    <name>A9BZR1_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Tetratricopeptide TPR_2 repeat protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Daci_3331</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="2" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX35969.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012205169.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_3331"/>
    <dbReference type="PRIDE" id="A9BZR1"/>
    <dbReference type="EnsemblBacteria" id="ABX35969">
        <property type="protein sequence ID" value="ABX35969"/>
        <property type="gene ID" value="Daci_3331"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_3331"/>
    <dbReference type="eggNOG" id="COG0457">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_670349_0_0_4"/>
    <dbReference type="OMA" id="QARIFEM"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.25.40.10">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011990">
        <property type="entry name" value="TPR-like_helical_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019734">
        <property type="entry name" value="TPR_repeat"/>
    </dbReference>
    <dbReference type="SMART" id="SM00028">
        <property type="entry name" value="TPR"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48452">
        <property type="entry name" value="SSF48452"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ABX35969.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="410" mass="45607" checksum="83D0E8CBEEABDFF9" modified="2008-01-15" version="1">MDRLISQGMHSFSQGDHARMHALWSGTTVFSHLDNEAIASLLTSIQATAESGQGSEWSWLMLCLVYLDSSDQFTEDRSAALRQVGEWAQRALAMSPGNAYGHRYLGSAHYWLDEPEPALAAYRKSHALQPQADLQARIFEMEHAVPWRSIFSYPELADSPAAPDYYTAGVTVGKWKRPDTDAAALQEIERLQTTLYERCLERFASAGTPANGQEAAPAALDIHTYAMCCNNLGVLYNAQEQYEQAAAVLEAGLQQTCFQALLENLRHAYRQLGNRKQATDLSLLLMEDYALDTGLYLDCAQTACAYLNETSHHQDVLDIVAEAERRYAQLSPQQQQAQWEVRSMSFVHAHKVTALRALGQLKASHLQPELVEIALRHDPGDAQLLGIRAHMQGARQQVGGKGGFWSRLFG</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="44" xmlns="http://uniprot.org/uniprot">
    <accession>A9BZV8</accession>
    <name>A9BZV8_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_3378</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX36016.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012205216.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_3378"/>
    <dbReference type="PRIDE" id="A9BZV8"/>
    <dbReference type="EnsemblBacteria" id="ABX36016">
        <property type="protein sequence ID" value="ABX36016"/>
        <property type="gene ID" value="Daci_3378"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_3378"/>
    <dbReference type="eggNOG" id="ENOG5032ZEM">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_1840757_0_0_4"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="1">
        <location>
            <begin position="1"/>
            <end position="25"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5002735243" evidence="1">
        <location>
            <begin position="26"/>
            <end position="140"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX36016.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="140" mass="14751" checksum="3C92F70AC32AF4DD" modified="2008-01-15" version="1">MHTAAHLCSAALLAWLALGANPLHAAAPGEDPVVLNKPVDYLRLPTAKQPTSSGLDTVTDIPINVKAKIARYEAMSMTNAPGISTEANVVTTTTTSSTGMQRTCTQDLASNTNASAFNRYGPQTKDQIVVLKGDLVNVCR</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-01-19" version="43" xmlns="http://uniprot.org/uniprot">
    <accession>A9C086</accession>
    <name>A9C086_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_4021</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX36652.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_4021"/>
    <dbReference type="EnsemblBacteria" id="ABX36652">
        <property type="protein sequence ID" value="ABX36652"/>
        <property type="gene ID" value="Daci_4021"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_4021"/>
    <dbReference type="eggNOG" id="COG3103">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_1233382_0_0_4"/>
    <dbReference type="OMA" id="FECHEWA"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="1">
        <location>
            <begin position="1"/>
            <end position="24"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5002733221" evidence="1">
        <location>
            <begin position="25"/>
            <end position="224"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX36652.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="224" mass="23660" checksum="462938132FFED615" modified="2008-01-15" version="1">MLAYIPSRLAIAAITCAMAVPAFAHGGGGHAMGHGPGMAGGHSMPAQFDHRYGHDHYYPARGTWVSGLPAGSLSVAYGRANWYFHSGIWYRPYGSAFIVSLPPLGIVVPLLPPAYTTVWLDGSTYYYANGIYYSAAPGGYTVVAPPPDAGSAQVMPDQSVPMPVPESLVDPVIYPRAGQGQAQTDADRQACQQWAMAQPGAEVDAGVQQRGLAACMDARGYTVR</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="80" xmlns="http://uniprot.org/uniprot">
    <accession>A9C098</accession>
    <name>A9C098_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="7">Serine/threonine transporter SstT</fullName>
        </recommendedName>
        <alternativeName>
            <fullName evidence="7">Na(+)/serine-threonine symporter</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="7" type="primary">sstT</name>
        <name evidence="8" type="ordered locus">Daci_4033</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="9" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="7">Involved in the import of serine and threonine into the cell, with the concomitant import of sodium (symport system).</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="7">
            <text>L-serine(in) + Na(+)(in) = L-serine(out) + Na(+)(out)</text>
            <dbReference type="Rhea" id="RHEA:29575"/>
            <dbReference type="ChEBI" id="CHEBI:29101"/>
            <dbReference type="ChEBI" id="CHEBI:33384"/>
        </reaction>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="7">
            <text>L-threonine(in) + Na(+)(in) = L-threonine(out) + Na(+)(out)</text>
            <dbReference type="Rhea" id="RHEA:69999"/>
            <dbReference type="ChEBI" id="CHEBI:29101"/>
            <dbReference type="ChEBI" id="CHEBI:57926"/>
        </reaction>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="7">Cell inner membrane</location>
            <topology evidence="7">Multi-pass membrane protein</topology>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="7">Belongs to the dicarboxylate/amino acid:cation symporter (DAACS) (TC 2.A.23) family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX36664.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_4033"/>
    <dbReference type="PRIDE" id="A9C098"/>
    <dbReference type="EnsemblBacteria" id="ABX36664">
        <property type="protein sequence ID" value="ABX36664"/>
        <property type="gene ID" value="Daci_4033"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_4033"/>
    <dbReference type="eggNOG" id="COG3633">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_044581_0_0_4"/>
    <dbReference type="OMA" id="PVNLQLC"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015171">
        <property type="term" value="F:amino acid transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015293">
        <property type="term" value="F:symporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0032329">
        <property type="term" value="P:serine transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015826">
        <property type="term" value="P:threonine transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.3860.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01582">
        <property type="entry name" value="Ser_Thr_transp_SstT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001991">
        <property type="entry name" value="Na-dicarboxylate_symporter"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036458">
        <property type="entry name" value="Na:dicarbo_symporter_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023025">
        <property type="entry name" value="Ser_Thr_transp_SstT"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR42865">
        <property type="entry name" value="PTHR42865"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00375">
        <property type="entry name" value="SDF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF118215">
        <property type="entry name" value="SSF118215"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4 7" id="KW-0029">Amino-acid transport</keyword>
    <keyword evidence="7" id="KW-0997">Cell inner membrane</keyword>
    <keyword evidence="7" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="6 7" id="KW-0472">Membrane</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="7" id="KW-0769">Symport</keyword>
    <keyword evidence="3 7" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="5 7" id="KW-1133">Transmembrane helix</keyword>
    <keyword evidence="2 7" id="KW-0813">Transport</keyword>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="12"/>
            <end position="36"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="42"/>
            <end position="65"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="85"/>
            <end position="106"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="147"/>
            <end position="166"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="187"/>
            <end position="209"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="215"/>
            <end position="239"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="298"/>
            <end position="318"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="324"/>
            <end position="352"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022448"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022970"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01582"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="ABX36664.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="411" mass="42497" checksum="C4B76380E3CBC9AF" modified="2008-01-15" version="1">MPTIMLKALFARLARTSLVGQIAISLVAGGLLAWLWPEAAQSVSLLGTLFISALKAVAPVLVLLLVVSATSNHRPGQATQIRPILWLYVLGTFAAAVVAVAASMAFPSTIQFKDAAPAQGAPGRIGEVLMALVQSAFDNPVRALMNANYIGILAWALAMGMALRHASESTRTVMQDLGQAITRVIQGVIRLAPLGIFGLVAGTFAQSGLEKLLDYAHLLAVLLGCMLFVALVVNPLIVWTQTRRNPYPLVLTCLRESAVTAFFTRSSAANIPVNLALAQRLGLDEDTYSVSIPLGATINMAGAAVTISVLSLAAAHTLGIEVDLLTAILLCVVSAVCACGASGVAGGSLLLIPLACSLFGISNDLAMQVVGVGFVIGVIQDSAETALNSSTDVIFTAAACEAAGRREAVAA</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="51" xmlns="http://uniprot.org/uniprot">
    <accession>A9C0B8</accession>
    <name>A9C0B8_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Periplasmic sugar-binding protein, putative</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_4053</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX36684.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_4053"/>
    <dbReference type="PRIDE" id="A9C0B8"/>
    <dbReference type="EnsemblBacteria" id="ABX36684">
        <property type="protein sequence ID" value="ABX36684"/>
        <property type="gene ID" value="Daci_4053"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_4053"/>
    <dbReference type="eggNOG" id="COG1879">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_048104_0_0_4"/>
    <dbReference type="OMA" id="NEQYVAP"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0042597">
        <property type="term" value="C:periplasmic space"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR028082">
        <property type="entry name" value="Peripla_BP_I"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025997">
        <property type="entry name" value="SBP_2_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13407">
        <property type="entry name" value="Peripla_BP_4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53822">
        <property type="entry name" value="SSF53822"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Peripla_BP_4" evidence="1">
        <location>
            <begin position="46"/>
            <end position="325"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF13407"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX36684.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="387" mass="42553" checksum="19CB7EFF7E579CCC" modified="2008-01-15" version="1">MIPAAPSSGRPGGLHRGVLPWALRMTYMAWVMGVLAQSAAAAAQSVVFINPGRSDESYWTTVSEAMQDAASSLGMQLQVRYAQRDHLRPIEIARQIAALPKAQRPRYVMFTNDYSVAPEILRTLEAAGIDSFMAFSGVPETLRGQTGVARERYRHWLGSLEPGAEEAGYLTAKSLFAAARASGQARAADGRLHMVAIAGDRSTPSSVERNAGMRRAAAEASDVVLQQEVFGEWRRERAEQQAAVLFQRYPEVRLVWAGNDEMAFGAMQAWRARGGSPGRDAFFSAINSSAAAMTALRTGELSALAGGHFLTGAWALVMLYDHAHGADFASEGLEQVRPMFTLLDKSQIDRYEHRISAPLAPLDFRSYSKHLNPRLRRYGFELKHLLR</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="55" xmlns="http://uniprot.org/uniprot">
    <accession>A9C0H7</accession>
    <name>A9C0H7_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Extracellular solute-binding protein family 3</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ordered locus">Daci_4420</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="5" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX37050.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012206222.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_4420"/>
    <dbReference type="PRIDE" id="A9C0H7"/>
    <dbReference type="EnsemblBacteria" id="ABX37050">
        <property type="protein sequence ID" value="ABX37050"/>
        <property type="gene ID" value="Daci_4420"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_4420"/>
    <dbReference type="eggNOG" id="COG0834">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_019602_0_0_4"/>
    <dbReference type="OMA" id="YIAGIRM"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001638">
        <property type="entry name" value="Solute-binding_3/MltF_N"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00497">
        <property type="entry name" value="SBP_bac_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00062">
        <property type="entry name" value="PBPb"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1 2" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="2">
        <location>
            <begin position="1"/>
            <end position="23"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5002732737" evidence="2">
        <location>
            <begin position="24"/>
            <end position="297"/>
        </location>
    </feature>
    <feature type="domain" description="PBPb" evidence="3">
        <location>
            <begin position="35"/>
            <end position="268"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022729"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="SMART" id="SM00062"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="ABX37050.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="297" mass="32610" checksum="20E6EE4308B9775E" modified="2008-01-15" version="1">MIFRQWGIALGALGLSALSCVSAAGVLDKVQAGGALVIAHRESSVPFSYIDTRSGKPVGYALDLCLRLAEAVRKQTGRKDMKVEFLMVTPANRMAVIEQGKADMECGSTTNNAQRRQTVAFTVPHFITGARMLVKADSTINAMEDLKGKKLVSTKGTSPMALVTQANRQRLMGITIVEAPDHARALEMVEKGEADAFVMDDVLLNGLAAARPDPRALKVVGKFLSTEPLAIMLPKADTAFKKLVDEEMKRIITSREIHPIYEKWFLQPIPPNSTNLNLPISYLLRDFWKYPTADILL</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="70" xmlns="http://uniprot.org/uniprot">
    <accession>A9C0Q4</accession>
    <name>A9C0Q4_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Transcriptional regulator, MerR family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_4498</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX37127.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012206297.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_4498"/>
    <dbReference type="PRIDE" id="A9C0Q4"/>
    <dbReference type="EnsemblBacteria" id="ABX37127">
        <property type="protein sequence ID" value="ABX37127"/>
        <property type="gene ID" value="Daci_4498"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_4498"/>
    <dbReference type="eggNOG" id="COG0789">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_060077_2_3_4"/>
    <dbReference type="OMA" id="IHAKALG"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006355">
        <property type="term" value="P:regulation of transcription, DNA-templated"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009061">
        <property type="entry name" value="DNA-bd_dom_put_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000551">
        <property type="entry name" value="MerR-type_HTH_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13411">
        <property type="entry name" value="MerR_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00040">
        <property type="entry name" value="HTHMERR"/>
    </dbReference>
    <dbReference type="SMART" id="SM00422">
        <property type="entry name" value="HTH_MERR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46955">
        <property type="entry name" value="SSF46955"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50937">
        <property type="entry name" value="HTH_MERR_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HTH merR-type" evidence="1">
        <location>
            <begin position="1"/>
            <end position="68"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS50937"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX37127.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="129" mass="14664" checksum="20A140B3D450565E" modified="2008-01-15" version="1">MNIGELEVRSGATRHTLRYYEKIGLISPLRRTNNYRVYTPQTLQDLDFIQRAQSMGFSLGEIGEILNAQRNNSIDCAGGARLIEKKMAEIRKKITDLKSIYRYLDAERANLEASAARQLELQQLNGSSN</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="59" xmlns="http://uniprot.org/uniprot">
    <accession>A9C0S8</accession>
    <name>A9C0S8_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Fimbrial protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_5763</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX38391.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_5763"/>
    <dbReference type="PRIDE" id="A9C0S8"/>
    <dbReference type="EnsemblBacteria" id="ABX38391">
        <property type="protein sequence ID" value="ABX38391"/>
        <property type="gene ID" value="Daci_5763"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_5763"/>
    <dbReference type="eggNOG" id="COG3539">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_058392_6_1_4"/>
    <dbReference type="OMA" id="FMPHAKA"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009289">
        <property type="term" value="C:pilus"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0007155">
        <property type="term" value="P:cell adhesion"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.40.1090">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000259">
        <property type="entry name" value="Adhesion_dom_fimbrial"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036937">
        <property type="entry name" value="Adhesion_dom_fimbrial_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008966">
        <property type="entry name" value="Adhesion_dom_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00419">
        <property type="entry name" value="Fimbrial"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF49401">
        <property type="entry name" value="SSF49401"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Fimbrial" evidence="1">
        <location>
            <begin position="233"/>
            <end position="396"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF00419"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX38391.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="396" mass="41933" checksum="40BD03CD93413DE8" modified="2008-01-15" version="1">MLSFPAPHYSLKSSIKLLRDIFENHTSAMDRISIMHFSCIPSFVLRVRRLALIALPFLIAFSAATMNTNAFAGGVFSPTSSSISLPEEITVPGNYANGSTLWKSTATVFNLKAVLNTAFEYDVSKAVVFANVQSGTKTPGYNNVYGTNIPGIGIRWWATWRGPSAPNGRTMPITTESENHSGALGYFWNSSYPQDVWFELVKTGSVSAGTLTGSGMNVEMRFQCPGCIAGNVNLSGRTRVVVGPSCSVAASTISVPMGAVPILRFTGLQSTSIPQHFDITLECKGGAPESVLRPHITLTDANDTSNQSTVLTLSQATSGGKPVATGIGIQILKDGTALGYGPDSNVPGNTNQWSAGTIAQGVAQFKIPLTAKYVQTAAAVTTGQANGRATFTLNYQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-05-25" version="56" xmlns="http://uniprot.org/uniprot">
    <accession>A9C0T0</accession>
    <name>A9C0T0_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Extracellular solute-binding protein family 3</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ordered locus">Daci_5765</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="5" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX38393.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012207562.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_5765"/>
    <dbReference type="EnsemblBacteria" id="ABX38393">
        <property type="protein sequence ID" value="ABX38393"/>
        <property type="gene ID" value="Daci_5765"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_5765"/>
    <dbReference type="eggNOG" id="COG0834">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_019602_18_4_4"/>
    <dbReference type="OMA" id="VWTRKGE"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001638">
        <property type="entry name" value="Solute-binding_3/MltF_N"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00497">
        <property type="entry name" value="SBP_bac_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00062">
        <property type="entry name" value="PBPb"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1 2" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="2">
        <location>
            <begin position="1"/>
            <end position="35"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5002732743" evidence="2">
        <location>
            <begin position="36"/>
            <end position="286"/>
        </location>
    </feature>
    <feature type="domain" description="PBPb" evidence="3">
        <location>
            <begin position="47"/>
            <end position="270"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022729"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="SMART" id="SM00062"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="ABX38393.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="286" mass="30402" checksum="502BF30520691C33" modified="2008-01-15" version="1">MHTSPTLRRQPRATLSASLTFIAAALALACTQARADATLDKIKQRGKVTIGVLVNGGPFGSIDPSTQQLVGWNPELARALAKGLGVEAELVQVQTATRVQFLQAGKVDLLIASMELNPDRAETLGYAPTPFYRVGGIAAVRKGSGIARWEDLRGKPVCVSQGSSFAKPLASEYGAQVHGYKSSSDSLLALKGGNCVAAVHDSTLIYPLLRSNPEWAQYSAPIAGEVLPAPSVVWTRKGEADTIAAVDKVVQDWHRTGWLIAAEKRVGIEPANPLLPELQAKFKSAS</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="78" xmlns="http://uniprot.org/uniprot">
    <accession>A9C0Y6</accession>
    <name>A9C0Y6_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Transcriptional regulator, LysR family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Daci_5821</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="4" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the LysR transcriptional regulatory family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX38449.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_5821"/>
    <dbReference type="PRIDE" id="A9C0Y6"/>
    <dbReference type="EnsemblBacteria" id="ABX38449">
        <property type="protein sequence ID" value="ABX38449"/>
        <property type="gene ID" value="Daci_5821"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_5821"/>
    <dbReference type="eggNOG" id="COG0583">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_039613_6_3_4"/>
    <dbReference type="OMA" id="FRPRIRY"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003700">
        <property type="term" value="F:DNA-binding transcription factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd08415">
        <property type="entry name" value="PBP2_LysR_opines_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005119">
        <property type="entry name" value="LysR_subst-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037424">
        <property type="entry name" value="NocR_PBP2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000847">
        <property type="entry name" value="Tscrpt_reg_HTH_LysR"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036390">
        <property type="entry name" value="WH_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00126">
        <property type="entry name" value="HTH_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03466">
        <property type="entry name" value="LysR_substrate"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00039">
        <property type="entry name" value="HTHLYSR"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46785">
        <property type="entry name" value="SSF46785"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50931">
        <property type="entry name" value="HTH_LYSR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HTH lysR-type" evidence="2">
        <location>
            <begin position="9"/>
            <end position="66"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00009437"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS50931"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ABX38449.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="316" mass="34255" checksum="899002364A853747" modified="2008-01-15" version="1">MQAPPVQPMNFKQLEAFQAIMLSGSTTGAAERLGLSQPGISRLLAQLEQDLGLRLFIREKGRLVPTQEAEALLHDAQVLMDSAQCFRRHAEQLRLGGFKRRLLKVAVPGTLATSLMPAIAHQFMQAHPDVVLEVLSGSYTETERALLSRDADIGLVRLPMTMPGLRTRACLESEAVCIMPRGHALQALDEVTPSDLVDAPLILLGRQREIRQEIDMAFRHARVQPRVAVEVHSVGEACAHVAQGLGVSMVNGLLASYCQPGALSSRPFRPRIRYQLAIASLEAAAPSPLQDTLIALLVQAIVATGHAAPVDDMPKA</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="76" xmlns="http://uniprot.org/uniprot">
    <accession>A9C103</accession>
    <name>A9C103_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="7">Chloride channel core</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ordered locus">Daci_5838</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="8" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX38466.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012207635.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_5838"/>
    <dbReference type="PRIDE" id="A9C103"/>
    <dbReference type="EnsemblBacteria" id="ABX38466">
        <property type="protein sequence ID" value="ABX38466"/>
        <property type="gene ID" value="Daci_5838"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_5838"/>
    <dbReference type="eggNOG" id="COG0038">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_015263_6_0_4"/>
    <dbReference type="OMA" id="FAVCVMT"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005247">
        <property type="term" value="F:voltage-gated chloride channel activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014743">
        <property type="entry name" value="Cl-channel_core"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001807">
        <property type="entry name" value="Cl-channel_volt-gated"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00654">
        <property type="entry name" value="Voltage_CLC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00762">
        <property type="entry name" value="CLCHANNEL"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF81340">
        <property type="entry name" value="SSF81340"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4 6" id="KW-0472">Membrane</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 6" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="3 6" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="21"/>
            <end position="44"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="56"/>
            <end position="78"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="113"/>
            <end position="133"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="164"/>
            <end position="189"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="201"/>
            <end position="225"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="237"/>
            <end position="260"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="281"/>
            <end position="301"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="321"/>
            <end position="344"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="365"/>
            <end position="392"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="398"/>
            <end position="420"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="5">
        <location>
            <begin position="438"/>
            <end position="485"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Pro residues" evidence="5">
        <location>
            <begin position="438"/>
            <end position="461"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="ABX38466.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="485" mass="50104" checksum="43D37DA28A49BA4E" modified="2008-01-15" version="1">MQQEPDFLHNLNQEFRDGRRWLDRTIVLAYAAAAGLCVVAFTLMADAGFELFESIYHWQGGWAVLLWMPAVTAGAVWLTRRWAPGAAGSGIPQVIATLDPALDPAQRGRFVSLWLSFAKMALASAGFAAGLSIGREGPSVQVAAGVMHHARRWFGPHSGISHHALLVAGGAAGIAAAFNAPLAGVVFAIEELSRKLESRSSGLIIAAIVLAGLMGVSAFGNLSYFGRIQVPHLTWDALLPGLCVTLACGVLGGLFAKLLAASLTRTPERLNQLRARFPIRFAAAIALVIAVIGMVTGGATFGAGSEAVKHMLAGQADVPSFYVTLKFIATWLSAWVGVPGGIFAPSLSIGAGVGHNVAGLMGADIAPALIAMGMAAFLAAVTQAPLTAFIIVMEMVDGHSMVLSLMAAAMLASLVSRMLARPLYETLAQHMLSLVPAPAPAPAPATEPAPAAAPEPEPASAPASAPASTAEPAEPSRDQDKPAGA</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="59" xmlns="http://uniprot.org/uniprot">
    <accession>A9C1B0</accession>
    <name>A9C1B0_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="5">TRAP dicarboxylate transporter, DctM subunit</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ordered locus">Daci_5945</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="6" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="2">Cell inner membrane</location>
            <topology evidence="2">Multi-pass membrane protein</topology>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX38573.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012207742.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_5945"/>
    <dbReference type="PRIDE" id="A9C1B0"/>
    <dbReference type="EnsemblBacteria" id="ABX38573">
        <property type="protein sequence ID" value="ABX38573"/>
        <property type="gene ID" value="Daci_5945"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_5945"/>
    <dbReference type="eggNOG" id="COG1593">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_019824_4_1_4"/>
    <dbReference type="OMA" id="KMYAGMD"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010656">
        <property type="entry name" value="DctM"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004681">
        <property type="entry name" value="TRAP_DctM"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33362">
        <property type="entry name" value="PTHR33362"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF06808">
        <property type="entry name" value="DctM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF006066">
        <property type="entry name" value="HI0050"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00786">
        <property type="entry name" value="dctM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-0472">Membrane</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="3" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="3">
        <location>
            <begin position="6"/>
            <end position="32"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="3">
        <location>
            <begin position="53"/>
            <end position="73"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="3">
        <location>
            <begin position="93"/>
            <end position="112"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="3">
        <location>
            <begin position="133"/>
            <end position="158"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="3">
        <location>
            <begin position="170"/>
            <end position="193"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="3">
        <location>
            <begin position="214"/>
            <end position="235"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="3">
        <location>
            <begin position="241"/>
            <end position="260"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="3">
        <location>
            <begin position="272"/>
            <end position="293"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="3">
        <location>
            <begin position="313"/>
            <end position="330"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="3">
        <location>
            <begin position="337"/>
            <end position="353"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="3">
        <location>
            <begin position="359"/>
            <end position="385"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="3">
        <location>
            <begin position="397"/>
            <end position="421"/>
        </location>
    </feature>
    <feature type="domain" description="DctM" evidence="4">
        <location>
            <begin position="6"/>
            <end position="417"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00004429"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="Pfam" id="PF06808"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="ABX38573.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="428" mass="45733" checksum="B5D80A2BE85F5BE5" modified="2008-01-15" version="1">MGITLFIAIVVLLTLGFPVAFALAISAALAVFVGGRYPQLIVFKEMFTGIDSFPLMAVPFFILAAELMSGGALTHVLLRFAAQFVGHLRGGLGYANVLSLTLFSGISGSALADAAGPGSMMVKMMDKAGYARSYAAALTASTAIVGPIIPPSVSMIIYALQDENVSVGGLFMAGFIPGILIALAMAAVNWWVCRKRDYRSTEPRPDGRTIWINSFKAIPALMLIVLIVVGIRFGIFTPTEASVVAVFYALVCGKWVYRTLQWSALPGIAARSAMLTASVLLVMATSAAFAWVLTVEGIPQYLSELIVSWELSPTLFLIAVNILLLVFGIFMEPLPGVMILVPILAPIAFSLGIDPTHFAMVVIVNLTLGMITPPVGGLLFVTSVATRVSITDLTREMPLFLLAHFVVLCLLTFIPALSTWLPHTLGFQ</sequence>
</entry>
<entry dataset="Swiss-Prot" created="2009-03-24" modified="2022-08-03" version="70" xmlns="http://uniprot.org/uniprot">
    <accession>A9C1Z3</accession>
    <name>RBFA_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Ribosome-binding factor A</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="1" type="primary">rbfA</name>
        <name type="ordered locus">Daci_2991</name>
    </gene>
    <organism>
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference key="1">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain>DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="1">One of several proteins that assist in the late maturation steps of the functional core of the 30S ribosomal subunit. Associates with free 30S ribosomal subunits (but not with 30S subunits that are part of 70S ribosomes or polysomes). Required for efficient processing of 16S rRNA. May interact with the 5'-terminal helix region of 16S rRNA.</text>
    </comment>
    <comment type="subunit">
        <text evidence="1">Monomer. Binds 30S ribosomal subunits, but not 50S ribosomal subunits or 70S ribosomes.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="1">Belongs to the RbfA family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX35629.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012204835.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A9C1Z3"/>
    <dbReference type="SMR" id="A9C1Z3"/>
    <dbReference type="STRING" id="398578.Daci_2991"/>
    <dbReference type="PRIDE" id="A9C1Z3"/>
    <dbReference type="EnsemblBacteria" id="ABX35629">
        <property type="protein sequence ID" value="ABX35629"/>
        <property type="gene ID" value="Daci_2991"/>
    </dbReference>
    <dbReference type="GeneID" id="60687287"/>
    <dbReference type="KEGG" id="dac:Daci_2991"/>
    <dbReference type="eggNOG" id="COG0858">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_089475_5_1_4"/>
    <dbReference type="OMA" id="GDLQHCK"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030490">
        <property type="term" value="P:maturation of SSU-rRNA"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.300.20">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00003">
        <property type="entry name" value="RbfA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015946">
        <property type="entry name" value="KH_dom-like_a/b"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000238">
        <property type="entry name" value="RbfA"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023799">
        <property type="entry name" value="RbfA_dom_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33515">
        <property type="entry name" value="PTHR33515"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02033">
        <property type="entry name" value="RBFA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF89919">
        <property type="entry name" value="SSF89919"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00082">
        <property type="entry name" value="rbfA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword id="KW-0963">Cytoplasm</keyword>
    <keyword id="KW-1185">Reference proteome</keyword>
    <keyword id="KW-0690">Ribosome biogenesis</keyword>
    <feature type="chain" id="PRO_1000088883" description="Ribosome-binding factor A">
        <location>
            <begin position="1"/>
            <end position="123"/>
        </location>
    </feature>
    <evidence type="ECO:0000255" key="1">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00003"/>
        </source>
    </evidence>
    <sequence length="123" mass="13708" checksum="6E003CBAF9147A3B" modified="2008-01-15" version="1">MATRKSAAPNRSFKVSDQIQRDLAELIARELKDPRVGMVTLQSVEVTPDYAHAKVYFSLLVGDPQATQEALNQAAGFLRNGLFKRLHIHTVPTLHFIYDRTSERAADMNALIAKAVSSRGKEE</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2021-06-02" version="53" xmlns="http://uniprot.org/uniprot">
    <accession>A9C214</accession>
    <name>A9C214_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Daci_3012</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="2" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX35650.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012204856.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_3012"/>
    <dbReference type="EnsemblBacteria" id="ABX35650">
        <property type="protein sequence ID" value="ABX35650"/>
        <property type="gene ID" value="Daci_3012"/>
    </dbReference>
    <dbReference type="GeneID" id="60687308"/>
    <dbReference type="KEGG" id="dac:Daci_3012"/>
    <dbReference type="eggNOG" id="COG4113">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_121774_4_0_4"/>
    <dbReference type="OMA" id="WECANIL"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="CDD" id="cd09873">
        <property type="entry name" value="PIN_Pae0151-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029060">
        <property type="entry name" value="PIN-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR044153">
        <property type="entry name" value="PIN_Pae0151-like"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF88723">
        <property type="entry name" value="SSF88723"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ABX35650.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="144" mass="15888" checksum="401DFADDF8EF8815" modified="2008-01-15" version="1">MTSFVLDASVTAAWLLPDAASVHTQRLYTRIRRHEVDPQAPNLWQWECGNLIASGVHGGRIPHSSVEGLWGVLEAIRHRVELHELAPAQHKAVLDVALDTRLPVYDAAYLWLAQSLRLPLATFDAAQAAAARKRGLALLAPEDF</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="34" xmlns="http://uniprot.org/uniprot">
    <accession>A9C2G0</accession>
    <name>A9C2G0_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Daci_3468</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="2" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX36104.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012205304.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_3468"/>
    <dbReference type="PRIDE" id="A9C2G0"/>
    <dbReference type="EnsemblBacteria" id="ABX36104">
        <property type="protein sequence ID" value="ABX36104"/>
        <property type="gene ID" value="Daci_3468"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_3468"/>
    <dbReference type="HOGENOM" id="CLU_2914863_0_0_4"/>
    <dbReference type="OMA" id="FPVRGSQ"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ABX36104.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="67" mass="7680" checksum="1FFC759789AA30E6" modified="2008-01-15" version="1">MSRVVPTESFNPDPDARYHRSLLEAFPVRGNQPLLLRMEPRSPLGRLYARGLRALRAAFATELPRTF</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="38" xmlns="http://uniprot.org/uniprot">
    <accession>A9C2G3</accession>
    <name>A9C2G3_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Daci_3471</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="2" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX36107.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012205307.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="PRIDE" id="A9C2G3"/>
    <dbReference type="EnsemblBacteria" id="ABX36107">
        <property type="protein sequence ID" value="ABX36107"/>
        <property type="gene ID" value="Daci_3471"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_3471"/>
    <dbReference type="HOGENOM" id="CLU_134928_0_0_4"/>
    <dbReference type="OMA" id="CHISAAL"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ABX36107.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="130" mass="14106" checksum="5D4DE1758D105849" modified="2008-01-15" version="1">MPDTDMHACARLAQALARAPDPESLATDALCHISAALSVLEMHVERSNRAMVVGVHDLLRSYHLKADRAAAEQPVEALASSVLPQMSADLQGLLEIIDRVNDDEMDDPILYAVSYLLRAAKRFSDAAPQA</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="83" xmlns="http://uniprot.org/uniprot">
    <accession>A9C2N5</accession>
    <name>A9C2N5_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Transcriptional regulator, GntR family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ordered locus">Daci_3752</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="6" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX36384.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012205578.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_3752"/>
    <dbReference type="PRIDE" id="A9C2N5"/>
    <dbReference type="EnsemblBacteria" id="ABX36384">
        <property type="protein sequence ID" value="ABX36384"/>
        <property type="gene ID" value="Daci_3752"/>
    </dbReference>
    <dbReference type="GeneID" id="60687980"/>
    <dbReference type="KEGG" id="dac:Daci_3752"/>
    <dbReference type="eggNOG" id="COG1802">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_017584_5_1_4"/>
    <dbReference type="OMA" id="FHRAINI"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003700">
        <property type="term" value="F:DNA-binding transcription factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd07377">
        <property type="entry name" value="WHTH_GntR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.120.530">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011711">
        <property type="entry name" value="GntR_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008920">
        <property type="entry name" value="TF_FadR/GntR_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000524">
        <property type="entry name" value="Tscrpt_reg_HTH_GntR"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036390">
        <property type="entry name" value="WH_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07729">
        <property type="entry name" value="FCD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00392">
        <property type="entry name" value="GntR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00035">
        <property type="entry name" value="HTHGNTR"/>
    </dbReference>
    <dbReference type="SMART" id="SM00895">
        <property type="entry name" value="FCD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00345">
        <property type="entry name" value="HTH_GNTR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46785">
        <property type="entry name" value="SSF46785"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48008">
        <property type="entry name" value="SSF48008"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50949">
        <property type="entry name" value="HTH_GNTR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0804">Transcription</keyword>
    <keyword evidence="1" id="KW-0805">Transcription regulation</keyword>
    <feature type="domain" description="HTH gntR-type" evidence="4">
        <location>
            <begin position="9"/>
            <end position="76"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023015"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023163"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="PROSITE" id="PS50949"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="ABX36384.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="211" mass="23924" checksum="D0023750DA1127F3" modified="2008-01-15" version="1">MSTNTLTPRALYEQVAEKLRLRIFEHELAPGDWIDELKIAEEYGISRTPLREALKVLAAEGLVTMKVRRGAYVTEVSSKDIADVYHLLSLLESDAVQVVAESGSDEELAALQQTHEELKAQTRDADRFFELNESFHMQLLQIADNRWRNQLVADLRKVMKLNRHKSLFKQGRIEDSLAEHETVMQALLRRDGAAAAQAMRQHFQNGLAAAS</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="71" xmlns="http://uniprot.org/uniprot">
    <accession>A9C2R1</accession>
    <name>A9C2R1_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">DNA helicase</fullName>
            <ecNumber evidence="2">3.6.4.12</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="7" type="ordered locus">Daci_3778</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="8" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>ATP + H2O = ADP + H(+) + phosphate</text>
            <dbReference type="Rhea" id="RHEA:13065"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:43474"/>
            <dbReference type="ChEBI" id="CHEBI:456216"/>
            <dbReference type="EC" id="3.6.4.12"/>
        </reaction>
    </comment>
    <dbReference type="EC" id="3.6.4.12" evidence="2"/>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX36410.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_3778"/>
    <dbReference type="PRIDE" id="A9C2R1"/>
    <dbReference type="EnsemblBacteria" id="ABX36410">
        <property type="protein sequence ID" value="ABX36410"/>
        <property type="gene ID" value="Daci_3778"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_3778"/>
    <dbReference type="eggNOG" id="COG0210">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_428090_0_0_4"/>
    <dbReference type="OMA" id="QHILPGA"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016887">
        <property type="term" value="F:ATP hydrolysis activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="RHEA"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003678">
        <property type="term" value="F:DNA helicase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014017">
        <property type="entry name" value="DNA_helicase_UvrD-like_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000212">
        <property type="entry name" value="DNA_helicase_UvrD/REP"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014016">
        <property type="entry name" value="UvrD-like_ATP-bd"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11070">
        <property type="entry name" value="PTHR11070"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13361">
        <property type="entry name" value="UvrD_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51198">
        <property type="entry name" value="UVRD_HELICASE_ATP_BIND"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4 5" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="5 7" id="KW-0347">Helicase</keyword>
    <keyword evidence="5" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="3 5" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="UvrD-like helicase ATP-binding" evidence="6">
        <location>
            <begin position="46"/>
            <end position="340"/>
        </location>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <begin position="67"/>
            <end position="74"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001665"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00012551"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00560"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="PROSITE" id="PS51198"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="ABX36410.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="689" mass="76461" checksum="09F99DE507B37656" modified="2008-01-15" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="90" xmlns="http://uniprot.org/uniprot">
    <accession>A9C2X7</accession>
    <name>A9C2X7_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">DNA topoisomerase</fullName>
            <ecNumber evidence="3">5.6.2.1</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="13">Omega-protein</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="12">Relaxing enzyme</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="10">Swivelase</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="11">Untwisting enzyme</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="16" type="ordered locus">Daci_4150</name>
    </gene>
    <organism evidence="16 17">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="16 17" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="17">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="17" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="17">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>ATP-independent breakage of single-stranded DNA, followed by passage and rejoining.</text>
            <dbReference type="EC" id="5.6.2.1"/>
        </reaction>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the type IA topoisomerase family.</text>
    </comment>
    <dbReference type="EC" id="5.6.2.1" evidence="3"/>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX36781.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012205960.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_4150"/>
    <dbReference type="PRIDE" id="A9C2X7"/>
    <dbReference type="EnsemblBacteria" id="ABX36781">
        <property type="protein sequence ID" value="ABX36781"/>
        <property type="gene ID" value="Daci_4150"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_4150"/>
    <dbReference type="eggNOG" id="COG0550">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_002929_5_2_4"/>
    <dbReference type="OMA" id="RVSWCVG"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005694">
        <property type="term" value="C:chromosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003917">
        <property type="term" value="F:DNA topoisomerase type I (single strand cut, ATP-independent) activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006265">
        <property type="term" value="P:DNA topological change"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd00186">
        <property type="entry name" value="TOP1Ac"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="CDD" id="cd03362">
        <property type="entry name" value="TOPRIM_TopoIA_TopoIII"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.290.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.460.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.70.20.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000380">
        <property type="entry name" value="Topo_IA"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003601">
        <property type="entry name" value="Topo_IA_2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023406">
        <property type="entry name" value="Topo_IA_AS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013497">
        <property type="entry name" value="Topo_IA_cen"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013824">
        <property type="entry name" value="Topo_IA_cen_sub1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013825">
        <property type="entry name" value="Topo_IA_cen_sub2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013826">
        <property type="entry name" value="Topo_IA_cen_sub3"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023405">
        <property type="entry name" value="Topo_IA_core_domain"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003602">
        <property type="entry name" value="Topo_IA_DNA-bd_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013498">
        <property type="entry name" value="Topo_IA_Znf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005738">
        <property type="entry name" value="TopoIII"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006171">
        <property type="entry name" value="TOPRIM_domain"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR034144">
        <property type="entry name" value="TOPRIM_TopoIII"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11390">
        <property type="entry name" value="PTHR11390"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01131">
        <property type="entry name" value="Topoisom_bac"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01751">
        <property type="entry name" value="Toprim"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01396">
        <property type="entry name" value="zf-C4_Topoisom"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00417">
        <property type="entry name" value="PRTPISMRASEI"/>
    </dbReference>
    <dbReference type="SMART" id="SM00437">
        <property type="entry name" value="TOP1Ac"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00436">
        <property type="entry name" value="TOP1Bc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00493">
        <property type="entry name" value="TOPRIM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56712">
        <property type="entry name" value="SSF56712"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01056">
        <property type="entry name" value="topB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00396">
        <property type="entry name" value="TOPOISOMERASE_I_PROK"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50880">
        <property type="entry name" value="TOPRIM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="8" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="9 16" id="KW-0413">Isomerase</keyword>
    <keyword evidence="4" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="17" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="7" id="KW-0799">Topoisomerase</keyword>
    <keyword evidence="6" id="KW-0862">Zinc</keyword>
    <keyword evidence="5" id="KW-0863">Zinc-finger</keyword>
    <feature type="domain" description="Toprim" evidence="15">
        <location>
            <begin position="1"/>
            <end position="132"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="14">
        <location>
            <begin position="646"/>
            <end position="670"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00000213"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00009446"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00012891"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022771"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022833"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023029"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00023235"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00030003"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="ARBA" id="ARBA00031985"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="12">
        <source>
            <dbReference type="ARBA" id="ARBA00032235"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="13">
        <source>
            <dbReference type="ARBA" id="ARBA00032877"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="14">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="15">
        <source>
            <dbReference type="PROSITE" id="PS50880"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="16">
        <source>
            <dbReference type="EMBL" id="ABX36781.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="17">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="670" mass="73013" checksum="65D0F61288694889" modified="2008-01-15" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2021-06-02" version="40" xmlns="http://uniprot.org/uniprot">
    <accession>A9C2Y1</accession>
    <name>A9C2Y1_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Daci_4154</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="2" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX36785.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012205963.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_4154"/>
    <dbReference type="EnsemblBacteria" id="ABX36785">
        <property type="protein sequence ID" value="ABX36785"/>
        <property type="gene ID" value="Daci_4154"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_4154"/>
    <dbReference type="eggNOG" id="ENOG502Z8H7">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_112900_0_0_4"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ABX36785.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="245" mass="26786" checksum="960B3A1D519CF527" modified="2008-01-15" version="1">MSQNPNPFLRGYWNLKIVRTLSISYEDGIPHVWRNIHPSQQHLSDEELISSSCIVTSDFAVVTNGSEPVSAEALAECDADEGVNGEGVIGAVVYAIHGEDFDGRLIHVGDSYSVEAAREVVQRLSFETGYYSRCWEISSAHISQETGQYLANLADLATPEAFLFIAFRVPYSPAIGVKLISTPWTDKNLEHAEGITAEQLRQEHRSKGMPADLANILELAGQADVRILILDADAPVLLGLPLAEP</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="49" xmlns="http://uniprot.org/uniprot">
    <accession>A9C2Z8</accession>
    <name>A9C2Z8_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_4171</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX36802.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012205980.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_4171"/>
    <dbReference type="PRIDE" id="A9C2Z8"/>
    <dbReference type="EnsemblBacteria" id="ABX36802">
        <property type="protein sequence ID" value="ABX36802"/>
        <property type="gene ID" value="Daci_4171"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_4171"/>
    <dbReference type="eggNOG" id="ENOG502ZBTQ">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_155310_0_0_4"/>
    <dbReference type="OMA" id="DYRTERS"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019110">
        <property type="entry name" value="Uncharacterised_RAQPRD"/>
    </dbReference>
    <dbReference type="Pfam" id="PF09686">
        <property type="entry name" value="Plasmid_RAQPRD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01690">
        <property type="entry name" value="ICE_RAQPRD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="99"/>
            <end position="127"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX36802.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="127" mass="13918" checksum="BFE30E5D1FC3202E" modified="2008-01-15" version="1">MLAPIWLRAAHRGVPTFLVTALLMGQFPVALAESPAQRQELVAALRQLDALERTIADGAAHAPIQPGERYHFDYPRLLADLARVRAGIQAYLTPSRAQPRDLSELAGEYRTERTAPPSLPTTAQGRP</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="80" xmlns="http://uniprot.org/uniprot">
    <accession>A9C351</accession>
    <name>A9C351_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Transcriptional regulator, TetR family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ordered locus">Daci_4533</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="5" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX37162.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_4533"/>
    <dbReference type="PRIDE" id="A9C351"/>
    <dbReference type="EnsemblBacteria" id="ABX37162">
        <property type="protein sequence ID" value="ABX37162"/>
        <property type="gene ID" value="Daci_4533"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_4533"/>
    <dbReference type="eggNOG" id="COG1309">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_069356_15_12_4"/>
    <dbReference type="OMA" id="PEFSRGW"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023772">
        <property type="entry name" value="DNA-bd_HTH_TetR-type_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009057">
        <property type="entry name" value="Homeobox-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001647">
        <property type="entry name" value="HTH_TetR"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036271">
        <property type="entry name" value="Tet_transcr_reg_TetR-rel_C_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR039536">
        <property type="entry name" value="TetR_C_Proteobacteria"/>
    </dbReference>
    <dbReference type="Pfam" id="PF14246">
        <property type="entry name" value="TetR_C_7"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00440">
        <property type="entry name" value="TetR_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00455">
        <property type="entry name" value="HTHTETR"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46689">
        <property type="entry name" value="SSF46689"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48498">
        <property type="entry name" value="SSF48498"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01081">
        <property type="entry name" value="HTH_TETR_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50977">
        <property type="entry name" value="HTH_TETR_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0678">Repressor</keyword>
    <feature type="domain" description="HTH tetR-type" evidence="3">
        <location>
            <begin position="18"/>
            <end position="78"/>
        </location>
    </feature>
    <feature type="DNA-binding region" description="H-T-H motif" evidence="2">
        <location>
            <begin position="41"/>
            <end position="60"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022491"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00335"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="PROSITE" id="PS50977"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="ABX37162.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="218" mass="23597" checksum="C3F15EEAF35FE12A" modified="2008-01-15" version="1">MNERSFIIRGMKKKEDISERRAVIVEAALQCFVERGFHCTSMRDIAQAASVSLGNLYNHFDSKQALIAEVATQEQTELLPLLQALERAAAPSLPVVAQFLAAYQALCRQREWAVLSAECLSEIARSPGLAPAFEANRRRMLDGLAGFMERGAQQGLLRPAVPVRLAAQLLLDAVESDALRFALAVTPQEDAGADEGVDVLHPALLACLLGGEAWGDAT</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-01-19" version="73" xmlns="http://uniprot.org/uniprot">
    <accession>A9C3F5</accession>
    <name>A9C3F5_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="6">Binding-protein-dependent transport systems inner membrane component</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ordered locus">Daci_4637</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="7" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="4">Cell membrane</location>
            <topology evidence="4">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="4">Belongs to the binding-protein-dependent transport system permease family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX37266.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012206436.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_4637"/>
    <dbReference type="EnsemblBacteria" id="ABX37266">
        <property type="protein sequence ID" value="ABX37266"/>
        <property type="gene ID" value="Daci_4637"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_4637"/>
    <dbReference type="eggNOG" id="COG0600">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_046113_1_2_4"/>
    <dbReference type="OMA" id="LRWHPGY"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0055085">
        <property type="term" value="P:transmembrane transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd06261">
        <property type="entry name" value="TM_PBP2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.3720.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000515">
        <property type="entry name" value="MetI-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035906">
        <property type="entry name" value="MetI-like_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00528">
        <property type="entry name" value="BPD_transp_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF161098">
        <property type="entry name" value="SSF161098"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50928">
        <property type="entry name" value="ABC_TM1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3 4" id="KW-0472">Membrane</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1 4" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="2 4" id="KW-1133">Transmembrane helix</keyword>
    <keyword evidence="4" id="KW-0813">Transport</keyword>
    <feature type="transmembrane region" description="Helical" evidence="4">
        <location>
            <begin position="36"/>
            <end position="58"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="4">
        <location>
            <begin position="93"/>
            <end position="116"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="4">
        <location>
            <begin position="128"/>
            <end position="146"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="4">
        <location>
            <begin position="152"/>
            <end position="171"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="4">
        <location>
            <begin position="192"/>
            <end position="209"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="4">
        <location>
            <begin position="215"/>
            <end position="235"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="4">
        <location>
            <begin position="247"/>
            <end position="266"/>
        </location>
    </feature>
    <feature type="domain" description="ABC transmembrane type-1" evidence="5">
        <location>
            <begin position="86"/>
            <end position="266"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="RuleBase" id="RU363032"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="PROSITE" id="PS50928"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="ABX37266.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="283" mass="30763" checksum="24B5A0189E6E4FAF" modified="2008-01-15" version="1">MSDARTVTALPASSAPPAGDAWSPLLRFAAGVGRRLVPWLVPLALIAVWQAASAWGWLSTRVLPAPLDVLRAAQALAESGELLKHVQVSAGRALGGLAIGGGLGLALGLLTGSLRWAETLLDSTIQMVRNIPALALIPLVILWFGIDESAKLFLISVSVFFPIYLNTFHGIRNVDPALIEMGRSYGLTRWQLYREVILPGALSSILVGLRFSLGLMWVILIVAETISAQSGIGYLTMNAREFLQTDVVLVGILLYALLGKLADWFARALEHWWLRWHPGYQPK</sequence>
</entry>
<entry dataset="Swiss-Prot" created="2009-04-14" modified="2022-08-03" version="65" xmlns="http://uniprot.org/uniprot">
    <accession>A9C3G0</accession>
    <name>FETP_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Probable Fe(2+)-trafficking protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name type="ordered locus">Daci_4642</name>
    </gene>
    <organism>
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference key="1">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain>DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="1">Could be a mediator in iron transactions between iron acquisition and iron-requiring processes, such as synthesis and/or repair of Fe-S clusters in biosynthetic enzymes.</text>
    </comment>
    <comment type="similarity">
        <text evidence="1">Belongs to the Fe(2+)-trafficking protein family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX37271.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012206441.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A9C3G0"/>
    <dbReference type="SMR" id="A9C3G0"/>
    <dbReference type="STRING" id="398578.Daci_4642"/>
    <dbReference type="PRIDE" id="A9C3G0"/>
    <dbReference type="EnsemblBacteria" id="ABX37271">
        <property type="protein sequence ID" value="ABX37271"/>
        <property type="gene ID" value="Daci_4642"/>
    </dbReference>
    <dbReference type="GeneID" id="60688823"/>
    <dbReference type="KEGG" id="dac:Daci_4642"/>
    <dbReference type="eggNOG" id="COG2924">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_170994_0_0_4"/>
    <dbReference type="OMA" id="SKQTMLI"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005506">
        <property type="term" value="F:iron ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.3880.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00686">
        <property type="entry name" value="Fe_traffic_YggX"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007457">
        <property type="entry name" value="Fe_traffick_prot_YggX"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036766">
        <property type="entry name" value="Fe_traffick_prot_YggX_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR36965">
        <property type="entry name" value="PTHR36965"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04362">
        <property type="entry name" value="Iron_traffic"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF029827">
        <property type="entry name" value="Fe_traffic_YggX"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF111148">
        <property type="entry name" value="SSF111148"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword id="KW-0408">Iron</keyword>
    <keyword id="KW-1185">Reference proteome</keyword>
    <feature type="chain" id="PRO_1000131838" description="Probable Fe(2+)-trafficking protein">
        <location>
            <begin position="1"/>
            <end position="90"/>
        </location>
    </feature>
    <evidence type="ECO:0000255" key="1">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00686"/>
        </source>
    </evidence>
    <sequence length="90" mass="9957" checksum="C7FD8CE28140CBCF" modified="2008-01-15" version="1">MARTVHCIKLGVDAEGLDFPPYPGELGKRIFEGVSKQAWADWLKHQTMLVNENRLNLADARARQYLARQMENHFFGGGADAAAGYVPPTA</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="49" xmlns="http://uniprot.org/uniprot">
    <accession>A9BLK1</accession>
    <name>A9BLK1_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_3855</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX36486.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_3855"/>
    <dbReference type="PRIDE" id="A9BLK1"/>
    <dbReference type="EnsemblBacteria" id="ABX36486">
        <property type="protein sequence ID" value="ABX36486"/>
        <property type="gene ID" value="Daci_3855"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_3855"/>
    <dbReference type="eggNOG" id="ENOG5033VN1">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_1502205_0_0_4"/>
    <dbReference type="OMA" id="FTDALHC"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="1">
        <location>
            <begin position="1"/>
            <end position="26"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5002734859" evidence="1">
        <location>
            <begin position="27"/>
            <end position="186"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX36486.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="186" mass="19940" checksum="4E8A66461EE6B71C" modified="2008-01-15" version="1">MRPLSHAMNACSKAFFTLLLAGTACATVQAAPATAADITTLFTDALHCRIEFPDGRDEALAQRLRAQGVTVVDRAPGESLDLLYLFATPLEIDGTQVSSITVRGGSGSIVAARATGSLQALVQRTKARPQARSRWDLEGFGELPAQYTRAMPLRKGLDETPPRIVIGHVAGEAPDAMRWGCRSYDD</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="59" xmlns="http://uniprot.org/uniprot">
    <accession>A9BLN6</accession>
    <name>A9BLN6_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Daci_3890</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="2" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX36521.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012205715.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_3890"/>
    <dbReference type="PRIDE" id="A9BLN6"/>
    <dbReference type="EnsemblBacteria" id="ABX36521">
        <property type="protein sequence ID" value="ABX36521"/>
        <property type="gene ID" value="Daci_3890"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_3890"/>
    <dbReference type="eggNOG" id="COG0702">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_071330_2_1_4"/>
    <dbReference type="OMA" id="FCCIGTT"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036291">
        <property type="entry name" value="NAD(P)-bd_dom_sf"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51735">
        <property type="entry name" value="SSF51735"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ABX36521.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="210" mass="22824" checksum="6377810121B4401F" modified="2008-01-15" version="1">MQLLIVGATGLVGSQVLQQALADSRITRVVAPVRRALPAHPRLLAPLVDFEHLPEDADWWRADALVCTLGTTIKTAGSRPAFRRVDHDYPLLAAQLARRHGTATYVLNSAMGADAGSRIFYNRVKGELERDLQAQGFASLTFVRPGLISGPRTEHRAGERFMVGVLGDLGPLLPRRWRLNPAHRIAQALIEAAVNARPGVHIVGSEALAE</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="42" xmlns="http://uniprot.org/uniprot">
    <accession>A9BLP0</accession>
    <name>A9BLP0_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Daci_3894</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="2" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX36525.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012205719.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_3894"/>
    <dbReference type="PRIDE" id="A9BLP0"/>
    <dbReference type="EnsemblBacteria" id="ABX36525">
        <property type="protein sequence ID" value="ABX36525"/>
        <property type="gene ID" value="Daci_3894"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_3894"/>
    <dbReference type="eggNOG" id="ENOG50300P8">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_1988988_0_0_4"/>
    <dbReference type="OMA" id="IMWTERA"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025630">
        <property type="entry name" value="DUF4288"/>
    </dbReference>
    <dbReference type="Pfam" id="PF14119">
        <property type="entry name" value="DUF4288"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ABX36525.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="125" mass="14380" checksum="1F9EC5E7E80D47EC" modified="2008-01-15" version="1">MKHDKNLSPVGWYVVSYLLRFVELNDERRDDEQDRFVSWENTVLVRASTLDEAYEKGLAFAGENAKPYKGGPDGVPVQWELLGITEVLPIYEELADGAEIMWTERAPRKLKNLRQLVKPKGAFQQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="73" xmlns="http://uniprot.org/uniprot">
    <accession>A9BLS9</accession>
    <name>A9BLS9_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="7">Cytochrome c class I</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ordered locus">Daci_4237</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="8" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX36868.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_4237"/>
    <dbReference type="PRIDE" id="A9BLS9"/>
    <dbReference type="EnsemblBacteria" id="ABX36868">
        <property type="protein sequence ID" value="ABX36868"/>
        <property type="gene ID" value="Daci_4237"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_4237"/>
    <dbReference type="eggNOG" id="COG2863">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_076280_0_1_4"/>
    <dbReference type="OMA" id="PECVTCH"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009055">
        <property type="term" value="F:electron transfer activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0020037">
        <property type="term" value="F:heme binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.760.10">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009056">
        <property type="entry name" value="Cyt_c-like_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036909">
        <property type="entry name" value="Cyt_c-like_dom_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13442">
        <property type="entry name" value="Cytochrome_CBB3"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46626">
        <property type="entry name" value="SSF46626"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51007">
        <property type="entry name" value="CYTC"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1 4" id="KW-0349">Heme</keyword>
    <keyword evidence="3 4" id="KW-0408">Iron</keyword>
    <keyword evidence="2 4" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="5" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="5">
        <location>
            <begin position="1"/>
            <end position="36"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5002732897" evidence="5">
        <location>
            <begin position="37"/>
            <end position="262"/>
        </location>
    </feature>
    <feature type="domain" description="Cytochrome c" evidence="6">
        <location>
            <begin position="56"/>
            <end position="141"/>
        </location>
    </feature>
    <feature type="domain" description="Cytochrome c" evidence="6">
        <location>
            <begin position="154"/>
            <end position="244"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022617"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023004"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00433"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="PROSITE" id="PS51007"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="ABX36868.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="262" mass="26460" checksum="049156B395A1C100" modified="2008-01-15" version="1">MAGQMPLPTMIRMNKQTLSRSCIAIGICMLMGSAWAQDAAPKAPAPAAAPTAAVQGSAAAGQKIAQSGTPQGAAACATCHGAKGEGMAGFPALAGQHAGYLARQLQHLADGSRQAPVMAPMAKALSAQDRADVSAYYASLPLPIQPVRGPLPKGKDDDGAWLVERGRWADGIPACAQCHGPGGVGVGADFPAIGHLTADYMQSQVAAWNKGQREAGPLGLMGKVAQKLTPADIQAVAAYYARLHGTSSSTSTAATASAPAKP</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="48" xmlns="http://uniprot.org/uniprot">
    <accession>A9BM54</accession>
    <name>A9BM54_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="6">Colicin V production protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ordered locus">Daci_4770</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="7" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX37399.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012206569.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_4770"/>
    <dbReference type="PRIDE" id="A9BM54"/>
    <dbReference type="EnsemblBacteria" id="ABX37399">
        <property type="protein sequence ID" value="ABX37399"/>
        <property type="gene ID" value="Daci_4770"/>
    </dbReference>
    <dbReference type="GeneID" id="60689108"/>
    <dbReference type="KEGG" id="dac:Daci_4770"/>
    <dbReference type="eggNOG" id="COG1286">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_092720_2_3_4"/>
    <dbReference type="OMA" id="FTWVDWA"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009403">
        <property type="term" value="P:toxin biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003825">
        <property type="entry name" value="Colicin-V_CvpA"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02674">
        <property type="entry name" value="Colicin_V"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4 5" id="KW-0472">Membrane</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 5" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="3 5" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="32"/>
            <end position="52"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="64"/>
            <end position="81"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="101"/>
            <end position="123"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="ABX37399.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="163" mass="18190" checksum="04D327B98FAA8789" modified="2008-01-15" version="1">MSTVDWVLLACVLASMLLGAWRGLVYEVLSLLGWLVAFVVARIWAADVALWLPMQDWDMQLRYAAGFVLLFVLALFGWGLVSWLSRRLIEAVGLRPVDRTLGALFGVLRGALLALVATMVISYTPLHQGQWWQDSALAPWLMQALAVVLPQLPQEWGRYLPAA</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="61" xmlns="http://uniprot.org/uniprot">
    <accession>A9BML1</accession>
    <name>A9BML1_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="4">CRM domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="5" type="ordered locus">Daci_4927</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="6" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX37556.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012206726.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_4927"/>
    <dbReference type="PRIDE" id="A9BML1"/>
    <dbReference type="EnsemblBacteria" id="ABX37556">
        <property type="protein sequence ID" value="ABX37556"/>
        <property type="gene ID" value="Daci_4927"/>
    </dbReference>
    <dbReference type="GeneID" id="60689271"/>
    <dbReference type="KEGG" id="dac:Daci_4927"/>
    <dbReference type="eggNOG" id="COG1534">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_095994_0_0_4"/>
    <dbReference type="OMA" id="VIWKPEA"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003723">
        <property type="term" value="F:RNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.110.60">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001890">
        <property type="entry name" value="RNA-binding_CRM"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035920">
        <property type="entry name" value="YhbY-like_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01985">
        <property type="entry name" value="CRS1_YhbY"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM01103">
        <property type="entry name" value="CRS1_YhbY"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF75471">
        <property type="entry name" value="SSF75471"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51295">
        <property type="entry name" value="CRM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1 2" id="KW-0694">RNA-binding</keyword>
    <feature type="domain" description="CRM" evidence="4">
        <location>
            <begin position="4"/>
            <end position="100"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="3">
        <location>
            <begin position="135"/>
            <end position="157"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022884"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00626"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="PROSITE" id="PS51295"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="ABX37556.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="157" mass="17597" checksum="049D87264090071A" modified="2008-01-15" version="1">MPQIQLTPAERREHRANAHHLDPVVLIGGDGLTAAVQKEVNAGLNAHGLIKVRVFNDDRAAREQMYLQLCDELGAAPIQHIGKLLVLWRPMPEKEKAIDENRMPGPRDVKLLKFSKRSGQKPEVKQIRVLGNQRLTAGGQVKRAKPKQKSVKKRQAD</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="52" xmlns="http://uniprot.org/uniprot">
    <accession>A9BN26</accession>
    <name>A9BN26_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Cupin 4 family protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Daci_5092</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="4" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>Fe(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29033"/>
        </cofactor>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX37721.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012206891.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_5092"/>
    <dbReference type="PRIDE" id="A9BN26"/>
    <dbReference type="EnsemblBacteria" id="ABX37721">
        <property type="protein sequence ID" value="ABX37721"/>
        <property type="gene ID" value="Daci_5092"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_5092"/>
    <dbReference type="eggNOG" id="COG2850">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_039125_1_0_4"/>
    <dbReference type="OMA" id="VDQFVPE"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003347">
        <property type="entry name" value="JmjC_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR039994">
        <property type="entry name" value="JmjC_protein"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR13096">
        <property type="entry name" value="PTHR13096"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08007">
        <property type="entry name" value="Cupin_4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00558">
        <property type="entry name" value="JmjC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51184">
        <property type="entry name" value="JMJC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="JmjC" evidence="2">
        <location>
            <begin position="101"/>
            <end position="227"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001954"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS51184"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ABX37721.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="376" mass="42364" checksum="492921888A8F8EE0" modified="2008-01-15" version="1">MDTNTPLALLGGLTASQFMRRHWHKKPLLVRQAIPGFKPLIPRARLLAMAGEDGVESRLIQQQDGGQWKLSHGPLSRRSLPSLQKPGWTVLVQGVDLHDDGVHQLMQQFRFVPEARLDDLMISFATDQGGVGPHFDSYDVFLLQAHGRRRWRIGRQKDLSLQPDVPLKVLSNFEPEEEFVLEPGDMLYLPPKWAHDGIAEGECMTYSIGFRSPARDELARELLLRMSDEPDEPEAPMVYRDPDQPAVEAPGEIPSSLHDFARKALERALAEPLALERALGEYMTEPKANVWFEHGEEHGMFESVVLDRRTRMMYDAKHIFINGESYLAGGRDATLMRKLADTRALSRADLAKASDDALELLSSWFDAGWVRGGPLS</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="91" xmlns="http://uniprot.org/uniprot">
    <accession>A9BN34</accession>
    <name>A9BN34_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">Histidine kinase</fullName>
            <ecNumber evidence="2">2.7.13.3</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="9" type="ordered locus">Daci_5100</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="9 10" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="10" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>ATP + protein L-histidine = ADP + protein N-phospho-L-histidine.</text>
            <dbReference type="EC" id="2.7.13.3"/>
        </reaction>
    </comment>
    <dbReference type="EC" id="2.7.13.3" evidence="2"/>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX37729.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012206899.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_5100"/>
    <dbReference type="PRIDE" id="A9BN34"/>
    <dbReference type="EnsemblBacteria" id="ABX37729">
        <property type="protein sequence ID" value="ABX37729"/>
        <property type="gene ID" value="Daci_5100"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_5100"/>
    <dbReference type="eggNOG" id="COG0642">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_000445_42_3_4"/>
    <dbReference type="OMA" id="NACKWAD"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004673">
        <property type="term" value="F:protein histidine kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0007165">
        <property type="term" value="P:signal transduction"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.565.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003660">
        <property type="entry name" value="HAMP_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003594">
        <property type="entry name" value="HATPase_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036890">
        <property type="entry name" value="HATPase_C_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005467">
        <property type="entry name" value="His_kinase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004358">
        <property type="entry name" value="Sig_transdc_His_kin-like_C"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02518">
        <property type="entry name" value="HATPase_c"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00344">
        <property type="entry name" value="BCTRLSENSOR"/>
    </dbReference>
    <dbReference type="SMART" id="SM00387">
        <property type="entry name" value="HATPase_c"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55874">
        <property type="entry name" value="SSF55874"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50885">
        <property type="entry name" value="HAMP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50109">
        <property type="entry name" value="HIS_KIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="5 9" id="KW-0418">Kinase</keyword>
    <keyword evidence="6" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-0597">Phosphoprotein</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4" id="KW-0808">Transferase</keyword>
    <keyword evidence="6" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="6" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="20"/>
            <end position="39"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="194"/>
            <end position="218"/>
        </location>
    </feature>
    <feature type="domain" description="HAMP" evidence="8">
        <location>
            <begin position="215"/>
            <end position="266"/>
        </location>
    </feature>
    <feature type="domain" description="Histidine kinase" evidence="7">
        <location>
            <begin position="274"/>
            <end position="479"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00000085"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00012438"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022553"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022777"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="PROSITE" id="PS50109"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="PROSITE" id="PS50885"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="ABX37729.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="482" mass="51835" checksum="31188F0772DA2DBD" modified="2008-01-15" version="1">MNAPQERQVSRLGDSLRLRLLAGTLAWVLAAVLLAGWGLRGLFRDHIAQQLQAQLVLQLDQLSAAVNSLPGGRIEVGLAVGDPRLAQPLSGLYWQIDQVSDGAGPPEKAGLLRSRSLWDQTLDWHQFRADAGRPDEHHEDTALNTGMLPDGQGHQLVAVARPLQLPEADAPPLRLIVAADSALLAEPMQRFTTMLIAALGTLAAGLVLAVVLQLRLALRPLQLLRKGLSDVRKGATPRLEGRFPQELRPLVQEFNHVLDVNADMVQRARTQAGNLAHAVNTPLSILGNAAAQEGGALAELVREQVASASRQVDHHLARARAAARQATGLRTPLEPPLASLVRTMERLHAGRGIRFALKGDVQPWDFLGDGQDLMEILGNLLDNAGKWAAQAVSLEVQGLEHDQAGGPLLLTVDDDGPGIEDADLGRIFERGERLDERRPGAGLGLDIVRDLVQTYGGSIAASRSPLGGLRMQLRLPGAKRQA</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="62" xmlns="http://uniprot.org/uniprot">
    <accession>A9BN48</accession>
    <name>A9BN48_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Diguanylate phosphodiesterase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_5114</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX37743.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_5114"/>
    <dbReference type="PRIDE" id="A9BN48"/>
    <dbReference type="EnsemblBacteria" id="ABX37743">
        <property type="protein sequence ID" value="ABX37743"/>
        <property type="gene ID" value="Daci_5114"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_5114"/>
    <dbReference type="eggNOG" id="COG3434">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_044951_1_1_4"/>
    <dbReference type="OMA" id="RQPIFNR"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.20.20.450">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001633">
        <property type="entry name" value="EAL_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035919">
        <property type="entry name" value="EAL_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013976">
        <property type="entry name" value="HDOD"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00563">
        <property type="entry name" value="EAL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08668">
        <property type="entry name" value="HDOD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00052">
        <property type="entry name" value="EAL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF141868">
        <property type="entry name" value="SSF141868"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51833">
        <property type="entry name" value="HDOD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HDOD" evidence="1">
        <location>
            <begin position="258"/>
            <end position="444"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS51833"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX37743.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="464" mass="50379" checksum="128F3C942CB4B5D6" modified="2008-01-15" version="1">MGPTPQSDLSQQTLPVGIFIQNIPTIRSAAYRASSTEHSMTELPVHLFNDAPAASPASTDRGMIARQAIVNGVQQIIGYELFNRSRAYPDHTAASDVSLVFTALSHAGEEDLVGTKLMFVNCTHESLAGGHLELLNPDKVVLEIPPLGLAAQQEVQARLPILSNLRARGFNLAFNHTVLESAYAAWLPLADYIKFDLSVLAPDQLAVLVNFAGRHTRAELIAEKVESAQQHEQVGRLGIQLFQGFWFARPTVVRTKLLSPSQQSIVQLLNLVRQQASTDAIEDVLKKDAGLAFNLMRLINSVGFGVQREITSFRQAVMLMGLKKLFRWAAMLLTASRNGGPPPAIGQTAVIRGRLMELLAQESLSEEDSDQAFVVGIFSLLGSMLDLPQDVAMSLIPVPDAVSAAVLRHEGVLGELLILAQACEASDDAAFNRSADALRLSSQQINWAHLQALAWTDQLADSSL</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="60" xmlns="http://uniprot.org/uniprot">
    <accession>A9BN52</accession>
    <name>A9BN52_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ordered locus">Daci_5118</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="5" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Periplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the UPF0065 (bug) family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX37747.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012206917.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_5118"/>
    <dbReference type="PRIDE" id="A9BN52"/>
    <dbReference type="EnsemblBacteria" id="ABX37747">
        <property type="protein sequence ID" value="ABX37747"/>
        <property type="gene ID" value="Daci_5118"/>
    </dbReference>
    <dbReference type="GeneID" id="60689467"/>
    <dbReference type="KEGG" id="dac:Daci_5118"/>
    <dbReference type="eggNOG" id="COG3181">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_045683_0_0_4"/>
    <dbReference type="OMA" id="FAVYKEV"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0042597">
        <property type="term" value="C:periplasmic space"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.190.150">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005064">
        <property type="entry name" value="BUG"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR042100">
        <property type="entry name" value="Bug_dom1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR42928">
        <property type="entry name" value="PTHR42928"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03401">
        <property type="entry name" value="TctC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF017082">
        <property type="entry name" value="YflP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="3">
        <location>
            <begin position="1"/>
            <end position="20"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5002732344" evidence="3">
        <location>
            <begin position="21"/>
            <end position="320"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004418"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00006987"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="ABX37747.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="320" mass="34400" checksum="FEBF91853B48B033" modified="2008-01-15" version="1">MNRRSWMGLTLVLASTGALAQAYPTKPIKLVVPFAPGGTTDIIARVIAEPLTKELGQPVVVDNRGGGGGVIGAMETARSQPDGYSLGIATVSTTATNPAINPKISYNTLTDFTPIINVAATPNVIAVNPKFPAKDYKSFEAELKKSQGKYSYASSGTGGIQHMLMELYKSLTNTFVTHIPYRGAGPALNDVVAGQVPMVLDNLPSALPFIKDNRLVPIVVAAPQRLAVLPNVPTFKEVGLEPVNRMAYYGILGPKNMPKDVVDKINAAVRKVLQDPAVRKRIEDTGSLVIGNSPEEFAKQIKDEYETYKKVVAQQKLTLE</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="58" xmlns="http://uniprot.org/uniprot">
    <accession>A9BPC0</accession>
    <name>A9BPC0_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">NADH:flavin oxidoreductase/NADH oxidase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_0037</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX32684.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012201977.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_0037"/>
    <dbReference type="PRIDE" id="A9BPC0"/>
    <dbReference type="EnsemblBacteria" id="ABX32684">
        <property type="protein sequence ID" value="ABX32684"/>
        <property type="gene ID" value="Daci_0037"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_0037"/>
    <dbReference type="eggNOG" id="COG1902">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_012153_0_0_4"/>
    <dbReference type="OMA" id="RWFIANP"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0010181">
        <property type="term" value="F:FMN binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016491">
        <property type="term" value="F:oxidoreductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.20.20.70">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013785">
        <property type="entry name" value="Aldolase_TIM"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001155">
        <property type="entry name" value="OxRdtase_FMN_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045247">
        <property type="entry name" value="Oye-like"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR22893">
        <property type="entry name" value="PTHR22893"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00724">
        <property type="entry name" value="Oxidored_FMN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Oxidored_FMN" evidence="1">
        <location>
            <begin position="3"/>
            <end position="348"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF00724"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX32684.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="372" mass="39915" checksum="B393326F2FDE054E" modified="2008-01-15" version="1">MTSLFDPIQAGELRLPNRIAMAPLTRNRAPQALPNDIMVTYYAQRASAGLLISEGTAISHQGQGYAHVPGLYGSEQLDGWKRVTDAVHKAGGRIVTQLWHVGRVSHTSLQPEGQAPVGPSPVAAKSKTYVIDEDSGKGQFVPTSAPRALAQHELPAIVHSFAVAARNAVETAGFDGVELHGANGYLLDQFLKTGANQRDDDYGGSIENRARLLLECTRAAADAVGGGRVGIRLSPVTPANDIADADPQPLFEYVVRQLAPLGLAYIHIIEGATGGPRELPDRPFDYAALKSAYREAGGQGAWMVNNGYDRDMALRAVENGHADIVAFGKAFISNPDLVHRLRDDLPLNPWNSSLFYGGGAEGYIDYPFARQA</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="80" xmlns="http://uniprot.org/uniprot">
    <accession>A9BPC7</accession>
    <name>A9BPC7_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Transcriptional regulator, histidine utilization repressor, GntR family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ordered locus">Daci_0148</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="5" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX32794.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_0148"/>
    <dbReference type="PRIDE" id="A9BPC7"/>
    <dbReference type="EnsemblBacteria" id="ABX32794">
        <property type="protein sequence ID" value="ABX32794"/>
        <property type="gene ID" value="Daci_0148"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_0148"/>
    <dbReference type="eggNOG" id="COG2188">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_063236_0_1_4"/>
    <dbReference type="OMA" id="RIPYEHE"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003700">
        <property type="term" value="F:DNA-binding transcription factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016829">
        <property type="term" value="F:lyase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006547">
        <property type="term" value="P:histidine metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0045892">
        <property type="term" value="P:negative regulation of transcription, DNA-templated"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006744">
        <property type="term" value="P:ubiquinone biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd07377">
        <property type="entry name" value="WHTH_GntR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.1410.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR028978">
        <property type="entry name" value="Chorismate_lyase_/UTRA_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010248">
        <property type="entry name" value="His_ut_repres"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000524">
        <property type="entry name" value="Tscrpt_reg_HTH_GntR"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011663">
        <property type="entry name" value="UTRA"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036390">
        <property type="entry name" value="WH_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00392">
        <property type="entry name" value="GntR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07702">
        <property type="entry name" value="UTRA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00035">
        <property type="entry name" value="HTHGNTR"/>
    </dbReference>
    <dbReference type="SMART" id="SM00345">
        <property type="entry name" value="HTH_GNTR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00866">
        <property type="entry name" value="UTRA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46785">
        <property type="entry name" value="SSF46785"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF64288">
        <property type="entry name" value="SSF64288"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR02018">
        <property type="entry name" value="his_ut_repres"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50949">
        <property type="entry name" value="HTH_GNTR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0456">Lyase</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0831">Ubiquinone biosynthesis</keyword>
    <feature type="domain" description="HTH gntR-type" evidence="3">
        <location>
            <begin position="25"/>
            <end position="93"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022688"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023239"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="PROSITE" id="PS50949"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="ABX32794.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="262" mass="29292" checksum="0E0EAAC56ED78306" modified="2008-01-15" version="1">MTTAHTMSSRSTASRLSATTAEVPMALYQQVKDHVLRKIADGSLSAGERVPSEQELVQEFGVARMTANRALRELAEQGVIVRVAGVGSFVAEEKPQSTLLRIANIAEEIRQRGHDHRFELISVRRESASPEAAASLQLSAGSSVFHLQGVHFENDVPVQLEDRHVNPRMAPDFMEQDFSLIQPSVYLVRNVPFDQIEHVVDAMLPTPEQARWLQMDADQPCLTLTRRTWYLGTPVTWVHCVHPGMRYRLGSRFRTDGGSHDG</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="47" xmlns="http://uniprot.org/uniprot">
    <accession>A9BPE0</accession>
    <name>A9BPE0_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Zinc finger SWIM domain protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Daci_0161</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="4" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX32807.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012202100.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_0161"/>
    <dbReference type="PRIDE" id="A9BPE0"/>
    <dbReference type="EnsemblBacteria" id="ABX32807">
        <property type="protein sequence ID" value="ABX32807"/>
        <property type="gene ID" value="Daci_0161"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_0161"/>
    <dbReference type="eggNOG" id="COG2345">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_023622_0_0_4"/>
    <dbReference type="OMA" id="HRELPYD"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008270">
        <property type="term" value="F:zinc ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007527">
        <property type="entry name" value="Znf_SWIM"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04434">
        <property type="entry name" value="SWIM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50966">
        <property type="entry name" value="ZF_SWIM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0862">Zinc</keyword>
    <keyword evidence="1" id="KW-0863">Zinc-finger</keyword>
    <feature type="domain" description="SWIM-type" evidence="2">
        <location>
            <begin position="511"/>
            <end position="552"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00325"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS50966"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ABX32807.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="575" mass="64739" checksum="161D19DCE58AA257" modified="2008-01-15" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="61" xmlns="http://uniprot.org/uniprot">
    <accession>A9BPG1</accession>
    <name>A9BPG1_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Extracellular ligand-binding receptor</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Daci_0182</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="4" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX32828.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012202121.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_0182"/>
    <dbReference type="PRIDE" id="A9BPG1"/>
    <dbReference type="EnsemblBacteria" id="ABX32828">
        <property type="protein sequence ID" value="ABX32828"/>
        <property type="gene ID" value="Daci_0182"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_0182"/>
    <dbReference type="eggNOG" id="COG0683">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_027128_1_0_4"/>
    <dbReference type="OMA" id="SNEACGP"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR028081">
        <property type="entry name" value="Leu-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR028082">
        <property type="entry name" value="Peripla_BP_I"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13458">
        <property type="entry name" value="Peripla_BP_6"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53822">
        <property type="entry name" value="SSF53822"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-0675">Receptor</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="1">
        <location>
            <begin position="1"/>
            <end position="32"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5002735656" evidence="1">
        <location>
            <begin position="33"/>
            <end position="413"/>
        </location>
    </feature>
    <feature type="domain" description="Peripla_BP_6" evidence="2">
        <location>
            <begin position="40"/>
            <end position="375"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF13458"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ABX32828.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="413" mass="44808" checksum="8CF0AA7CB6D602E5" modified="2008-01-15" version="1">MRKGLMRGGLTKARAAGCALGAGLLWTAAAQAQQISDDVVRIGVLSDMSGLYADTAGRGSVEAAKMAVADFGGQVLGKKIEVVWADHQNKADVGATHARTWFDRDGVDLIVDINNTAVAIAVNNLARERGKMVINTGGASDILTNEHCAPTAIHYTYDSYALANGAVRGILAQGKKDWFILGVDYAFGKAMTANVTDFLKEGGGKLVGTTFHPLNASDFSSFLLQAQASKASVINLANATSDTVNAIKAAHEFGIAPRQTLVPSLLFINDVHALGLRYGQGMVLTTGFYWDRTEATRAWSRRFFEKMKKMPSMIHAGAYSAVTNYLKAVQATRGDDGNAVARQLKQMPIEDFFAQNGKVREDGRMVHDMYLVHIKKPEESRYPWDYYKVLSTIPGDEAFRPLSKSSCKLVKTS</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="56" xmlns="http://uniprot.org/uniprot">
    <accession>A9BPI2</accession>
    <name>A9BPI2_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Daci_0203</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="4" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Periplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the UPF0065 (bug) family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX32849.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012202142.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_0203"/>
    <dbReference type="PRIDE" id="A9BPI2"/>
    <dbReference type="EnsemblBacteria" id="ABX32849">
        <property type="protein sequence ID" value="ABX32849"/>
        <property type="gene ID" value="Daci_0203"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_0203"/>
    <dbReference type="eggNOG" id="COG3181">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_045683_0_0_4"/>
    <dbReference type="OMA" id="WAQEAPV"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0042597">
        <property type="term" value="C:periplasmic space"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.190.150">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005064">
        <property type="entry name" value="BUG"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR042100">
        <property type="entry name" value="Bug_dom1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006311">
        <property type="entry name" value="TAT_signal"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR42928">
        <property type="entry name" value="PTHR42928"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03401">
        <property type="entry name" value="TctC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF017082">
        <property type="entry name" value="YflP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51318">
        <property type="entry name" value="TAT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004418"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00006987"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ABX32849.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="355" mass="36995" checksum="77925BBC1BB8A33E" modified="2008-01-15" version="1">MAVISGTASNSGFNGQLNDRLNDRLNNRLNRRQALALAAGAAAAGPASVLAQAGFATRPVRIVVPFAAGGATDVIARILGERMAQQLGQTVVVDNKPGAAGLIGGEMVVRSAPDGLTLLLGTTSTMLTNKYLYKKTAYDPLTDLTPLSRVCMAPIALVVTADVPATNLREFMAWAQANAGKLSYGSYGIGSHGHLACAVLSDMAGAGMAHAAYRGEALMVQDMLGGRIPIGMGSLLTLKPHIDAGKLRALAVTGTRRVPLLPEVPTFAEAGYRHEAMELSGWLAIAGPRGLPADLTRQWGEISNRAVASREGTARIIAAGFVPVDDDSPQRFGKAWAQEAPVWGRLLQAAGVQPG</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="82" xmlns="http://uniprot.org/uniprot">
    <accession>A9BPJ8</accession>
    <name>A9BPJ8_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">Histidine kinase</fullName>
            <ecNumber evidence="2">2.7.13.3</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="10" type="ordered locus">Daci_0219</name>
    </gene>
    <organism evidence="10 11">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="10 11" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="11">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="11" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="11">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>ATP + protein L-histidine = ADP + protein N-phospho-L-histidine.</text>
            <dbReference type="EC" id="2.7.13.3"/>
        </reaction>
    </comment>
    <dbReference type="EC" id="2.7.13.3" evidence="2"/>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX32865.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012202158.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_0219"/>
    <dbReference type="PRIDE" id="A9BPJ8"/>
    <dbReference type="EnsemblBacteria" id="ABX32865">
        <property type="protein sequence ID" value="ABX32865"/>
        <property type="gene ID" value="Daci_0219"/>
    </dbReference>
    <dbReference type="GeneID" id="60690623"/>
    <dbReference type="KEGG" id="dac:Daci_0219"/>
    <dbReference type="eggNOG" id="COG0642">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="eggNOG" id="COG0784">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="eggNOG" id="COG1457">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_008084_1_0_4"/>
    <dbReference type="OMA" id="RFQLWTQ"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000155">
        <property type="term" value="F:phosphorelay sensor kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd00082">
        <property type="entry name" value="HisKA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.565.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011006">
        <property type="entry name" value="CheY-like_superfamily"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003594">
        <property type="entry name" value="HATPase_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036890">
        <property type="entry name" value="HATPase_C_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005467">
        <property type="entry name" value="His_kinase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003661">
        <property type="entry name" value="HisK_dim/P"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036097">
        <property type="entry name" value="HisK_dim/P_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004358">
        <property type="entry name" value="Sig_transdc_His_kin-like_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001789">
        <property type="entry name" value="Sig_transdc_resp-reg_receiver"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02518">
        <property type="entry name" value="HATPase_c"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00512">
        <property type="entry name" value="HisKA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00072">
        <property type="entry name" value="Response_reg"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00344">
        <property type="entry name" value="BCTRLSENSOR"/>
    </dbReference>
    <dbReference type="SMART" id="SM00387">
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    </dbReference>
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        <property type="entry name" value="HisKA"/>
        <property type="match status" value="1"/>
    </dbReference>
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    </dbReference>
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        <property type="match status" value="1"/>
    </dbReference>
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        <property type="entry name" value="SSF52172"/>
        <property type="match status" value="1"/>
    </dbReference>
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    </dbReference>
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    </dbReference>
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            <position position="990"/>
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        <source>
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    </evidence>
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            <dbReference type="ARBA" id="ARBA00022553"/>
        </source>
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        <source>
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    </evidence>
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        <source>
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        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
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        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
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        <source>
            <dbReference type="PROSITE" id="PS50109"/>
        </source>
    </evidence>
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        <source>
            <dbReference type="PROSITE" id="PS50110"/>
        </source>
    </evidence>
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        <source>
            <dbReference type="EMBL" id="ABX32865.1"/>
        </source>
    </evidence>
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        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="1166" mass="127825" checksum="6732FE53ED28A69B" modified="2008-01-15" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="40" xmlns="http://uniprot.org/uniprot">
    <accession>A9BPM0</accession>
    <name>A9BPM0_DELAS</name>
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        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
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        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
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    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
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                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
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            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
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        <property type="molecule type" value="Genomic_DNA"/>
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    </dbReference>
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    <dbReference type="EnsemblBacteria" id="ABX32887">
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    </dbReference>
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        <location>
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        <location>
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        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX32887.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="343" mass="36682" checksum="3B9E698D3D163949" modified="2008-01-15" version="1">MLALSLAVSAVLGLLALWVFAPLFIALTAGAVVALLLLTLAGRTGLSGLMGRTARTLPVAGWWAVALCAGAACVAMLVLLPDRLDGAPFLAFGMGLLAATCAGALVWLTGWLIAGRQPVPVSWWTGSAMAGLGAFLALLLGGPDTAGWMAWRDQLRGYEAVPLRITLAEAPTAQREQALAELLQPLLEQGSRAVRHRQSTRFGNSVEHAVVPARWRIEGRLLEIMLAEKPPAPLLSAHVALLEQFAASGPAQAGQAPSWLMLASAQCLPPPRLRELSRLLGQGSELLARARRCTQQRSAQLQRLWPLLAGSVERVEVGEARRFRPWLGLQRWQAVAPTDNPEP</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="56" xmlns="http://uniprot.org/uniprot">
    <accession>A9BPP2</accession>
    <name>A9BPP2_DELAS</name>
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        <submittedName>
            <fullName evidence="8">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
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        <name evidence="8" type="ordered locus">Daci_0365</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
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        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
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            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
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        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
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                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
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            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="9" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="7">Cell inner membrane</location>
            <topology evidence="7">Multi-pass membrane protein</topology>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2 7">Belongs to the MlaE permease family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX33011.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
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        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
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    <dbReference type="EnsemblBacteria" id="ABX33011">
        <property type="protein sequence ID" value="ABX33011"/>
        <property type="gene ID" value="Daci_0365"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_0365"/>
    <dbReference type="eggNOG" id="COG0767">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
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        <property type="component" value="Chromosome"/>
    </dbReference>
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        <property type="term" value="C:ATP-binding cassette (ABC) transporter complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
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        <property type="entry name" value="ABC_MlaE_Proteobac"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR030802">
        <property type="entry name" value="Permease_MalE"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30188">
        <property type="entry name" value="PTHR30188"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02405">
        <property type="entry name" value="MlaE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00056">
        <property type="entry name" value="TIGR00056"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="7" id="KW-0997">Cell inner membrane</keyword>
    <keyword evidence="7" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="6 7" id="KW-0472">Membrane</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4 7" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="5 7" id="KW-1133">Transmembrane helix</keyword>
    <keyword evidence="3" id="KW-0813">Transport</keyword>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="163"/>
            <end position="189"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
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            <end position="224"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="279"/>
            <end position="301"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="313"/>
            <end position="336"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="348"/>
            <end position="371"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
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        </source>
    </evidence>
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        <source>
            <dbReference type="ARBA" id="ARBA00007556"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022448"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="RuleBase" id="RU362044"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="ABX33011.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="376" mass="40375" checksum="B6667DB95B9D682E" modified="2008-01-15" version="1">MSALNNPPQCSLRRDNDGQWALLTGSWGAAELGRRAQWRKLRAQLADAKGDDLGWNLEGLDWLDHVGAQLLWNHWGRRLPARLAASDAQRAMLERVGRFSKEPAPPPPRLNLLERIDSLGCLVINACGHFAQMTRLIGQLLIDLLRFARAPHRGPWRDISGHLYSMGATALPITALVGFLIGVVLAYLMALQLRQFGAESFIVNILGISLIRELGPLLAAILVAGRTGSAITAQIGVMRVTEELDAMQVMGIPHGFRLVLPRALALAIAMPLVSLWTTLAALAGGMLAADLTMGVTGAYFAEALPAAVKIGNLWIAMGKSVVFGALIALIGCHWGLRVEPNTQSLGKGTTASVVTAITMVIVVDAIFAILFKDVGI</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="61" xmlns="http://uniprot.org/uniprot">
    <accession>A9BPV2</accession>
    <name>A9BPV2_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="6">LemA family protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ordered locus">Daci_0425</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="7" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Single-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the LemA family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX33071.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012202362.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_0425"/>
    <dbReference type="PRIDE" id="A9BPV2"/>
    <dbReference type="EnsemblBacteria" id="ABX33071">
        <property type="protein sequence ID" value="ABX33071"/>
        <property type="gene ID" value="Daci_0425"/>
    </dbReference>
    <dbReference type="GeneID" id="60690832"/>
    <dbReference type="KEGG" id="dac:Daci_0425"/>
    <dbReference type="eggNOG" id="COG1704">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_056714_0_0_4"/>
    <dbReference type="OMA" id="ACGYNDF"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.1440.20">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023353">
        <property type="entry name" value="LemA-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007156">
        <property type="entry name" value="MamQ_LemA"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR34478">
        <property type="entry name" value="PTHR34478"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04011">
        <property type="entry name" value="LemA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF140478">
        <property type="entry name" value="SSF140478"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-0472">Membrane</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="4" id="KW-1133">Transmembrane helix</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004167"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00008854"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="ABX33071.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="195" mass="21819" checksum="F5561C066DDD0773" modified="2008-01-15" version="1">MKRLLATLATVLALTGCGYNDFQRLDEQTKSAWSEVLNQYQRRADLVPNIVASVKGEANFEQETLTKVVEARAKATSIQATPELVNNPEAFNKFQQAQGELSSALSRLMVVAERYPQLQANQGFRDLRVTLEGTENRITVARNQYIQAVQSYNVLARSFPTNLTAKVFSYEPKPSFSVQNEAEISRPPTVDFGNK</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="77" xmlns="http://uniprot.org/uniprot">
    <accession>A9BQ68</accession>
    <name>A9BQ68_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">Flagellar hook-basal body complex protein FliE</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="primary">fliE</name>
        <name evidence="4" type="ordered locus">Daci_0637</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="5" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1 3">Bacterial flagellum basal body</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2 3">Belongs to the FliE family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX33283.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_0637"/>
    <dbReference type="EnsemblBacteria" id="ABX33283">
        <property type="protein sequence ID" value="ABX33283"/>
        <property type="gene ID" value="Daci_0637"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_0637"/>
    <dbReference type="eggNOG" id="COG1677">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_147249_0_1_4"/>
    <dbReference type="OMA" id="LHDVMIT"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009425">
        <property type="term" value="C:bacterial-type flagellum basal body"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003774">
        <property type="term" value="F:cytoskeletal motor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005198">
        <property type="term" value="F:structural molecule activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0071973">
        <property type="term" value="P:bacterial-type flagellum-dependent cell motility"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00724">
        <property type="entry name" value="FliE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001624">
        <property type="entry name" value="FliE"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR34653">
        <property type="entry name" value="PTHR34653"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02049">
        <property type="entry name" value="FliE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR01006">
        <property type="entry name" value="FLGHOOKFLIE"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00205">
        <property type="entry name" value="fliE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-0975">Bacterial flagellum</keyword>
    <keyword evidence="4" id="KW-0966">Cell projection</keyword>
    <keyword evidence="4" id="KW-0969">Cilium</keyword>
    <keyword evidence="4" id="KW-0282">Flagellum</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004117"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00009272"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00724"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="ABX33283.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="109" mass="11650" checksum="CA18E75BF83EB5F4" modified="2008-01-15" version="1">MECVMDLRIPSTTSPLYGTQLPKGVGAGDASTKVAAGGFSQALQGALQSVSSAQNNSSQLQREVQLENPAVSLEETMIAMQKAQIGFQATMQVRNRLVQAYTDVMNMQV</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="75" xmlns="http://uniprot.org/uniprot">
    <accession>A9BQI8</accession>
    <name>A9BQI8_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Transcriptional regulator, IclR family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ordered locus">Daci_0043</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="6" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX32690.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012201983.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_0043"/>
    <dbReference type="PRIDE" id="A9BQI8"/>
    <dbReference type="EnsemblBacteria" id="ABX32690">
        <property type="protein sequence ID" value="ABX32690"/>
        <property type="gene ID" value="Daci_0043"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_0043"/>
    <dbReference type="eggNOG" id="COG1414">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_062618_4_0_4"/>
    <dbReference type="OMA" id="ATERTEM"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006355">
        <property type="term" value="P:regulation of transcription, DNA-templated"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.450.40">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029016">
        <property type="entry name" value="GAF-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014757">
        <property type="entry name" value="Tscrpt_reg_IclR_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005471">
        <property type="entry name" value="Tscrpt_reg_IclR_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036390">
        <property type="entry name" value="WH_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF09339">
        <property type="entry name" value="HTH_IclR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01614">
        <property type="entry name" value="IclR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00346">
        <property type="entry name" value="HTH_ICLR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46785">
        <property type="entry name" value="SSF46785"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51077">
        <property type="entry name" value="HTH_ICLR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51078">
        <property type="entry name" value="ICLR_ED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0804">Transcription</keyword>
    <keyword evidence="1" id="KW-0805">Transcription regulation</keyword>
    <feature type="domain" description="HTH iclR-type" evidence="3">
        <location>
            <begin position="7"/>
            <end position="70"/>
        </location>
    </feature>
    <feature type="domain" description="IclR-ED" evidence="4">
        <location>
            <begin position="71"/>
            <end position="254"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023015"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023163"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="PROSITE" id="PS51077"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="PROSITE" id="PS51078"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="ABX32690.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="257" mass="27309" checksum="5140ED041E7E4D39" modified="2008-01-15" version="1">MTSSSDAGSLKRGVAFLKLLATGGVRGCPLSELAEKSGVPHPSAHRILKQLIAERLVVHDAQTHRYRLGPLAFELGLAGSMLHDIRDLCEPAMAALSRETEDTAYLVVRSGFEAVCLHRLEGDFPIRTLVLQVGSRRPLGVGAGGLAVLAAIAPEEREAIIERVAPALPAFGKLTDAGLRLACEETARAGVAVIQNRVSLGVTAVGAHFCDSMGQAMGAVSVAALTQRMTAARVRRIAQQVRAAAAQIEQRIRTRKR</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="74" xmlns="http://uniprot.org/uniprot">
    <accession>A9BQP4</accession>
    <name>A9BQP4_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="6">Succinic semialdehyde dehydrogenase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ordered locus">Daci_0100</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="7" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="4">Belongs to the aldehyde dehydrogenase family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX32746.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012202039.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_0100"/>
    <dbReference type="PRIDE" id="A9BQP4"/>
    <dbReference type="EnsemblBacteria" id="ABX32746">
        <property type="protein sequence ID" value="ABX32746"/>
        <property type="gene ID" value="Daci_0100"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_0100"/>
    <dbReference type="eggNOG" id="COG1012">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_005391_5_1_4"/>
    <dbReference type="OMA" id="IKYICMS"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009013">
        <property type="term" value="F:succinate-semialdehyde dehydrogenase [NAD(P)+] activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009450">
        <property type="term" value="P:gamma-aminobutyric acid catabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.309.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.605.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016161">
        <property type="entry name" value="Ald_DH/histidinol_DH"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016163">
        <property type="entry name" value="Ald_DH_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016160">
        <property type="entry name" value="Ald_DH_CS_CYS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029510">
        <property type="entry name" value="Ald_DH_CS_GLU"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016162">
        <property type="entry name" value="Ald_DH_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015590">
        <property type="entry name" value="Aldehyde_DH_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010102">
        <property type="entry name" value="Succ_semiAld_DH"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00171">
        <property type="entry name" value="Aldedh"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53720">
        <property type="entry name" value="SSF53720"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01780">
        <property type="entry name" value="SSADH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00070">
        <property type="entry name" value="ALDEHYDE_DEHYDR_CYS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00687">
        <property type="entry name" value="ALDEHYDE_DEHYDR_GLU"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="1 4" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Aldedh" evidence="5">
        <location>
            <begin position="21"/>
            <end position="479"/>
        </location>
    </feature>
    <feature type="active site" evidence="2">
        <location>
            <position position="257"/>
        </location>
    </feature>
    <feature type="active site" evidence="3">
        <location>
            <position position="291"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023002"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU10007"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU10008"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="RuleBase" id="RU003345"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="Pfam" id="PF00171"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="ABX32746.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="484" mass="51729" checksum="8CB5720DCC5AA2C1" modified="2008-01-15" version="1">MPLALRDPSLLKNLCLIDGQWLAADDGSRIDVHNPATGEAVGHVPRMGEAETQRAIAAAERAFALWKQQTAEARARLLQRWFELMMENQEDLALIMTSEQGKPLAESRGEIAYAASYVQWFAEEARRIYGSTVPAPWADKRIIVTKEPVGVCAAITPWNFPAAMITRKVAPALAAGCTIIVKPAQQTPLSALAMAELAQRAGIPEGVFSVITGSSRAIGGVLTASMAVRKLTFTGSTEVGRVLAEQCAPTLKKMSLELGGNAPFIVFDDADLDAAVEGAMASKYRNTGQTCVCANRLLVQDGVYDAFMARLKVAVQALKVGNGLEAGVGQGPLIDQAAVDKVEELVADAVKNGAEVVLGGKRHALGGTFYEPTILANATDRMRIAREEVFGPVAPVFRFKTEEEAIRMANDTEYGLAAYFYARDVGRVWRVGEALEYGMVGINSGIISTAVAPFGGVKQSGMGREGGAAGIEEYLSTKYLCMGH</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="65" xmlns="http://uniprot.org/uniprot">
    <accession>A9BR20</accession>
    <name>A9BR20_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="7">Major facilitator superfamily MFS_1</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ordered locus">Daci_0329</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="8" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX32975.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012202268.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_0329"/>
    <dbReference type="PRIDE" id="A9BR20"/>
    <dbReference type="EnsemblBacteria" id="ABX32975">
        <property type="protein sequence ID" value="ABX32975"/>
        <property type="gene ID" value="Daci_0329"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_0329"/>
    <dbReference type="eggNOG" id="COG2211">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_029352_1_1_4"/>
    <dbReference type="OMA" id="ANPFYVD"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008521">
        <property type="term" value="F:acetyl-CoA transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.1250.20">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR024371">
        <property type="entry name" value="AcetylCoA_trans_1-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004752">
        <property type="entry name" value="AmpG_permease/AT-1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036259">
        <property type="entry name" value="MFS_trans_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR12778">
        <property type="entry name" value="PTHR12778"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13000">
        <property type="entry name" value="Acatn"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF103473">
        <property type="entry name" value="SSF103473"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4 6" id="KW-0472">Membrane</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 6" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="3 6" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="60"/>
            <end position="80"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="92"/>
            <end position="108"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="129"/>
            <end position="147"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="153"/>
            <end position="178"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="199"/>
            <end position="217"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="229"/>
            <end position="250"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="288"/>
            <end position="309"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="329"/>
            <end position="347"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="354"/>
            <end position="373"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="379"/>
            <end position="405"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="417"/>
            <end position="438"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="444"/>
            <end position="466"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="5">
        <location>
            <begin position="1"/>
            <end position="42"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="5">
        <location>
            <begin position="17"/>
            <end position="42"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="ABX32975.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="478" mass="51336" checksum="0A283C0434FA6B2C" modified="2008-01-15" version="1">MVARASPRHHGPDNGRSLPQPNMTEPSTTTSSAPSTPTEAPRRSWAQTLRVYAEPASLRMLALGFSAGLPLLLVLGTLSFWLREAGVDRTTIGYLSWVGLAYAFKWVWSPLVDRMPLPLLTRWLGRRRGWLLFAQMLIVAGLCGMAFNDPRVSLTPLVWCALAVAFGSATQDIALDAYRIESADTDRQAALAATYQTGYRLAMIWAGAGVLWLAARAEVAGTAGYQSGAWQVAYLAMAASMAVGMLTVLLSPEPVPRPLAPARNAAEWLRGALVEPFADFLGRYRWQALLVLGLIAIYRISDVVMGIMANPFYVDMGFTKDEVAAVTKVYGVIMTLAGAFLGGALAMRWGVMRVLMLGAALSAATNLLFAWLATRGHDVNALVWVVSADNLAGGIASAAFIAYLSGLTNVQYSATQYALFSSMMLLAPKWLAGFSGAFVDAHGYVSFFQATALLGLPVLVLIALASRVHAVRPAQRGS</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="43" xmlns="http://uniprot.org/uniprot">
    <accession>A9BR43</accession>
    <name>A9BR43_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Daci_0455</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="2" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX33101.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012202387.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_0455"/>
    <dbReference type="PRIDE" id="A9BR43"/>
    <dbReference type="EnsemblBacteria" id="ABX33101">
        <property type="protein sequence ID" value="ABX33101"/>
        <property type="gene ID" value="Daci_0455"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_0455"/>
    <dbReference type="eggNOG" id="ENOG502Z7UG">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_123182_0_0_4"/>
    <dbReference type="OMA" id="TEIELIW"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR021263">
        <property type="entry name" value="DUF2840"/>
    </dbReference>
    <dbReference type="Pfam" id="PF11000">
        <property type="entry name" value="DUF2840"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ABX33101.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="185" mass="20295" checksum="1B33AC1D240C9157" modified="2008-01-15" version="1">MTASASSAPAPVAFAATAAPSPPLLAHATGPTSTPLTRVSLAFLEHRFKLYLRFGEPARTLRLDRWRSLAVFMPNAMFCRIRWQSTDYGTVRWQLMVMQACTPLDAAQRIPGVQPGARLLLHTEGENQVRAVLERIDAIEALGIAPSAASPAYWRTLANRLAARLPLPEYTAERHAGWLIGRALP</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="67" xmlns="http://uniprot.org/uniprot">
    <accession>A9BR89</accession>
    <name>A9BR89_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="6">Efflux transporter, RND family, MFP subunit</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ordered locus">Daci_0501</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="7" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX33147.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012202433.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_0501"/>
    <dbReference type="PRIDE" id="A9BR89"/>
    <dbReference type="EnsemblBacteria" id="ABX33147">
        <property type="protein sequence ID" value="ABX33147"/>
        <property type="gene ID" value="Daci_0501"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_0501"/>
    <dbReference type="eggNOG" id="COG0845">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_018816_2_1_4"/>
    <dbReference type="OMA" id="NELFPGM"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016020">
        <property type="term" value="C:membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0022857">
        <property type="term" value="F:transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043602">
        <property type="entry name" value="CusB_dom_1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR032317">
        <property type="entry name" value="HlyD_D23"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006143">
        <property type="entry name" value="RND_pump_MFP"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00529">
        <property type="entry name" value="CusB_dom_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF16576">
        <property type="entry name" value="HlyD_D23"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01730">
        <property type="entry name" value="RND_mfp"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="3">
        <location>
            <begin position="1"/>
            <end position="34"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5002733014" evidence="3">
        <location>
            <begin position="35"/>
            <end position="430"/>
        </location>
    </feature>
    <feature type="domain" description="CusB_dom_1" evidence="4">
        <location>
            <begin position="54"/>
            <end position="376"/>
        </location>
    </feature>
    <feature type="domain" description="HlyD_D23" evidence="5">
        <location>
            <begin position="75"/>
            <end position="310"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="388"/>
            <end position="430"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00009477"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="Pfam" id="PF00529"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="Pfam" id="PF16576"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="ABX33147.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="430" mass="45169" checksum="C850A0C52043467E" modified="2008-01-15" version="1">MPSTRSNVSAAPSPYSSLRLTTVALAVTAAMAMAACGKKPEEKAAAQQQMPAVPVGVVVATPADVGLVTELPGRVDARRVAQIRARSAGIVQERLFREGSDVKAGQVLYRIDPAPYQATLQSAKATQARAEANQAQALAQLERYRPLVAANAISKQDFVNAEAAYKQAQADVAAGKASVRTAEINLGYTNVTAPISGRIGQSLVTEGALVGQGEATPLAVVQQINPVYVNFTQSSSEAFRLRRAMEQGKLKKADGAEAASVEVRLDDGTAYELKGKLLFTDLTVDSSTGQVTLRAEVPNPKGLLLPGMYVRVRMEQAQASNAIAVPQQAVTRTETGDTVSVVSDDGKITKRQVKVTTAQNNQWLVSEGLQAGEKVMVDGFQKLQMLPPGTPVKPVPWQPEAAGAQKPAGAAAPAPQAAADAKPADQADKK</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2021-06-02" version="45" xmlns="http://uniprot.org/uniprot">
    <accession>A9BRC7</accession>
    <name>A9BRC7_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="3">YiaAB two helix domain protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Daci_0539</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="4" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX33185.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012202471.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_0539"/>
    <dbReference type="EnsemblBacteria" id="ABX33185">
        <property type="protein sequence ID" value="ABX33185"/>
        <property type="gene ID" value="Daci_0539"/>
    </dbReference>
    <dbReference type="GeneID" id="60690882"/>
    <dbReference type="KEGG" id="dac:Daci_0539"/>
    <dbReference type="eggNOG" id="COG4298">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_118902_0_0_4"/>
    <dbReference type="OMA" id="FMLAKFV"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038972">
        <property type="entry name" value="YiaA-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008024">
        <property type="entry name" value="YiaAB"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37290">
        <property type="entry name" value="PTHR37290"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="Pfam" id="PF05360">
        <property type="entry name" value="YiaAB"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="20"/>
            <end position="39"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="45"/>
            <end position="62"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="83"/>
            <end position="101"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="107"/>
            <end position="128"/>
        </location>
    </feature>
    <feature type="domain" description="YiaAB" evidence="2">
        <location>
            <begin position="15"/>
            <end position="67"/>
        </location>
    </feature>
    <feature type="domain" description="YiaAB" evidence="2">
        <location>
            <begin position="81"/>
            <end position="133"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF05360"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ABX33185.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="157" mass="17264" checksum="9661E0E0C0D95240" modified="2008-01-15" version="1">MSSSPIVVQRDTRAWQLQVWVSFGIAVSLCAIGLAWLPGEQLEQAFMVMGYVFCLSAAFVLAKFVRDNEGGRSGAGDTPMWKLVVWGGFAVSMALTGWGLVSMDINVTYKAFLGVSWLYLITTAFTLAKMLRDRHEADLAQARMHGRREAAQPADAE</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2021-06-02" version="45" xmlns="http://uniprot.org/uniprot">
    <accession>A9BRC8</accession>
    <name>A9BRC8_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_0540</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX33186.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012202472.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_0540"/>
    <dbReference type="EnsemblBacteria" id="ABX33186">
        <property type="protein sequence ID" value="ABX33186"/>
        <property type="gene ID" value="Daci_0540"/>
    </dbReference>
    <dbReference type="GeneID" id="60690883"/>
    <dbReference type="KEGG" id="dac:Daci_0540"/>
    <dbReference type="eggNOG" id="ENOG503164Z">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_134839_0_0_4"/>
    <dbReference type="OMA" id="AFIPNEM"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="1">
        <location>
            <begin position="1"/>
            <end position="32"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5002735711" evidence="1">
        <location>
            <begin position="33"/>
            <end position="156"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX33186.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="156" mass="15129" checksum="3D0EC24B865EEAA5" modified="2008-01-15" version="1">MMVNQSVFARLPRALLTAGALCAALAMAPAHAQSEASVALSMLPVASVVGTASVASTAAGAVVALPAALSVGGAVLTVKAVQASATGTVYLLERASDGAQASVEVVGRGASASAYAVGTVLTCSVIGAGVVISAAGKVLAFIPNEMGKALLHNERL</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="65" xmlns="http://uniprot.org/uniprot">
    <accession>A9BRE8</accession>
    <name>A9BRE8_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">Tautomerase</fullName>
            <ecNumber evidence="3">5.3.2.-</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="5" type="ordered locus">Daci_0663</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="6" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1 3">Belongs to the 4-oxalocrotonate tautomerase family.</text>
    </comment>
    <dbReference type="EC" id="5.3.2.-" evidence="3"/>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX33309.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012202595.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_0663"/>
    <dbReference type="PRIDE" id="A9BRE8"/>
    <dbReference type="EnsemblBacteria" id="ABX33309">
        <property type="protein sequence ID" value="ABX33309"/>
        <property type="gene ID" value="Daci_0663"/>
    </dbReference>
    <dbReference type="GeneID" id="60685217"/>
    <dbReference type="KEGG" id="dac:Daci_0663"/>
    <dbReference type="eggNOG" id="COG1942">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_148073_5_3_4"/>
    <dbReference type="OMA" id="MHPGRTD"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016853">
        <property type="term" value="F:isomerase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006725">
        <property type="term" value="P:cellular aromatic compound metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.429.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004370">
        <property type="entry name" value="4-oxalocrotonate_tautomerase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014347">
        <property type="entry name" value="Tautomerase/MIF_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018191">
        <property type="entry name" value="Tautomerase_Pseudo-typ"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01361">
        <property type="entry name" value="Tautomerase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55331">
        <property type="entry name" value="SSF55331"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00013">
        <property type="entry name" value="taut"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-0413">Isomerase</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Tautomerase" evidence="4">
        <location>
            <begin position="5"/>
            <end position="59"/>
        </location>
    </feature>
    <feature type="active site" description="Proton acceptor; via imino nitrogen" evidence="2">
        <location>
            <position position="2"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00006723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="PIRSR" id="PIRSR618191-1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="RuleBase" id="RU362032"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="Pfam" id="PF01361"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="ABX33309.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="62" mass="7103" checksum="72A33F1B611E6DF4" modified="2008-01-15" version="1">MPTYHVEMMEGRTVEQKRKLVEEITRVSVEVLGGSPESVDILITDIKRENWATGGKLWSERS</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="79" xmlns="http://uniprot.org/uniprot">
    <accession>A9BRS2</accession>
    <name>A9BRS2_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="6">Thioredoxin</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ordered locus">Daci_0993</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="7" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the thioredoxin family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX33639.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012202925.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_0993"/>
    <dbReference type="PRIDE" id="A9BRS2"/>
    <dbReference type="EnsemblBacteria" id="ABX33639">
        <property type="protein sequence ID" value="ABX33639"/>
        <property type="gene ID" value="Daci_0993"/>
    </dbReference>
    <dbReference type="GeneID" id="60685555"/>
    <dbReference type="KEGG" id="dac:Daci_0993"/>
    <dbReference type="eggNOG" id="COG3118">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_046120_1_1_4"/>
    <dbReference type="OMA" id="QPRNMSM"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015035">
        <property type="term" value="F:protein-disulfide reductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.25.40.10">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005746">
        <property type="entry name" value="Thioredoxin"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036249">
        <property type="entry name" value="Thioredoxin-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017937">
        <property type="entry name" value="Thioredoxin_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013766">
        <property type="entry name" value="Thioredoxin_domain"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011990">
        <property type="entry name" value="TPR-like_helical_dom_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00085">
        <property type="entry name" value="Thioredoxin"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48452">
        <property type="entry name" value="SSF48452"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52833">
        <property type="entry name" value="SSF52833"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01068">
        <property type="entry name" value="thioredoxin"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00194">
        <property type="entry name" value="THIOREDOXIN_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51352">
        <property type="entry name" value="THIOREDOXIN_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-1015">Disulfide bond</keyword>
    <keyword evidence="4" id="KW-0676">Redox-active center</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0732">Signal</keyword>
    <feature type="domain" description="Thioredoxin" evidence="5">
        <location>
            <begin position="1"/>
            <end position="107"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00008987"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022729"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023157"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023284"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="PROSITE" id="PS51352"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="ABX33639.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="318" mass="35079" checksum="06B8526DE544F906" modified="2008-01-15" version="1">MIDVTIENFEAEVVAASMQVPVLVDFWAPWCGPCKTLGPILEKLEVAYEGRFKLVKIDSDQEQQLAGMFGIRSIPTCILMMGGRPVDGFMGAQPEGKLREFLDKHLPSEGELAAEAEADEAHQLLEAGDTQAALQKLADALAADPANDDARFDYVRLLIATGGYEEAGALLAEPLKRIPQATRFEALNQWLQCMLFVHNDERGNWEFAQFDAVIAQNKRDFDTRFGKARALAAEGQWAASMDELLEIIMRDKDWNGQAARKLYVGILELLTPPKPKKQDAIPGKSSGGIELLGKAGAEQDEATQLVNSYRRKLSMALN</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="58" xmlns="http://uniprot.org/uniprot">
    <accession>A9BS29</accession>
    <name>A9BS29_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">CitB domain protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_0793</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX33439.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_0793"/>
    <dbReference type="PRIDE" id="A9BS29"/>
    <dbReference type="EnsemblBacteria" id="ABX33439">
        <property type="protein sequence ID" value="ABX33439"/>
        <property type="gene ID" value="Daci_0793"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_0793"/>
    <dbReference type="eggNOG" id="COG1146">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_058617_1_0_4"/>
    <dbReference type="OMA" id="GKFAHGV"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012830">
        <property type="entry name" value="Citrate_utilization_prot_B"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036197">
        <property type="entry name" value="NarG-like_sf"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF103501">
        <property type="entry name" value="SSF103501"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR02484">
        <property type="entry name" value="CitB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="131"/>
            <end position="155"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="175"/>
            <end position="195"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="254"/>
            <end position="275"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="287"/>
            <end position="307"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="327"/>
            <end position="345"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="351"/>
            <end position="372"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX33439.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="403" mass="43559" checksum="8A69169B7E7B1243" modified="2008-01-15" version="1">MTEMQTLNALAQEAQDLAAGRVIPILPVSTETAAEGEVARALQICNACRYCEGFCAVFPAMTRRLEFGKADVHYLANLCHNCGACLHACQYAPPHEFAINIPKAMAEVRGQTYADYAWPSALGRLYQRNGLTLSLALAAGLSLFLVLAVALQGGLGRLWGADLGANFYNLFPHNLLVGIFAPVFLFVVLALAMGVRRFWKDVKPATGGVDVGTPAAAEAAHDVLRLKYLDGGHGEGCHNEDDAYTLSRRRFHHLTFYGFLLCFAATALATVYHYVFGWAAPYEFPSLPKLLGAVGGTSLMLGTAGLWRLNRRRHPLHGDARQKPMDLGFIALLFLVAASGMALWLGRGTPALALLLCLHLGAVIALFATLPYGKFAHGVFRTASLLRHNTEKRQPSPIGLGAD</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="61" xmlns="http://uniprot.org/uniprot">
    <accession>A9BS41</accession>
    <name>A9BS41_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Beta-lactamase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Daci_0805</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="4" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX33451.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012202737.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="PRIDE" id="A9BS41"/>
    <dbReference type="EnsemblBacteria" id="ABX33451">
        <property type="protein sequence ID" value="ABX33451"/>
        <property type="gene ID" value="Daci_0805"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_0805"/>
    <dbReference type="eggNOG" id="COG1680">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_020027_14_3_4"/>
    <dbReference type="OMA" id="CEKDYFA"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.710.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001466">
        <property type="entry name" value="Beta-lactam-related"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012338">
        <property type="entry name" value="Beta-lactam/transpept-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR021860">
        <property type="entry name" value="Peptidase_S12_Pab87-rel_C"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00144">
        <property type="entry name" value="Beta-lactamase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF11954">
        <property type="entry name" value="DUF3471"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56601">
        <property type="entry name" value="SSF56601"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Beta-lactamase" evidence="1">
        <location>
            <begin position="50"/>
            <end position="372"/>
        </location>
    </feature>
    <feature type="domain" description="DUF3471" evidence="2">
        <location>
            <begin position="420"/>
            <end position="477"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF00144"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF11954"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ABX33451.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="519" mass="55568" checksum="FBBFA8F5E87B986C" modified="2008-01-15" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="65" xmlns="http://uniprot.org/uniprot">
    <accession>A9BS42</accession>
    <name>A9BS42_DELAS</name>
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        <submittedName>
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        </submittedName>
    </protein>
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        <name evidence="4" type="ordered locus">Daci_0806</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
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        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="5" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX33452.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_0806"/>
    <dbReference type="PRIDE" id="A9BS42"/>
    <dbReference type="EnsemblBacteria" id="ABX33452">
        <property type="protein sequence ID" value="ABX33452"/>
        <property type="gene ID" value="Daci_0806"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_0806"/>
    <dbReference type="eggNOG" id="COG1269">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="eggNOG" id="COG4585">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_014388_0_0_4"/>
    <dbReference type="OMA" id="VWYRIDW"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016301">
        <property type="term" value="F:kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016310">
        <property type="term" value="P:phosphorylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.565.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011623">
        <property type="entry name" value="7TMR_DISM_rcpt_extracell_dom1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003594">
        <property type="entry name" value="HATPase_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036890">
        <property type="entry name" value="HATPase_C_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005467">
        <property type="entry name" value="His_kinase_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07695">
        <property type="entry name" value="7TMR-DISM_7TM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02518">
        <property type="entry name" value="HATPase_c"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00387">
        <property type="entry name" value="HATPase_c"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55874">
        <property type="entry name" value="SSF55874"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50109">
        <property type="entry name" value="HIS_KIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-0418">Kinase</keyword>
    <keyword evidence="2" id="KW-0472">Membrane</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4" id="KW-0808">Transferase</keyword>
    <keyword evidence="2" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="2" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="461"/>
            <end position="481"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="488"/>
            <end position="508"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="520"/>
            <end position="540"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="552"/>
            <end position="570"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="576"/>
            <end position="595"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="607"/>
            <end position="625"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="637"/>
            <end position="654"/>
        </location>
    </feature>
    <feature type="domain" description="Histidine kinase" evidence="3">
        <location>
            <begin position="807"/>
            <end position="897"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="31"/>
            <end position="215"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="97"/>
            <end position="123"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic residues" evidence="1">
        <location>
            <begin position="156"/>
            <end position="171"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="172"/>
            <end position="212"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="PROSITE" id="PS50109"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="ABX33452.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="921" mass="100598" checksum="28BB0E0C1A1FA34C" modified="2008-01-15" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="47" xmlns="http://uniprot.org/uniprot">
    <accession>A9BS68</accession>
    <name>A9BS68_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Putative lipoprotein transmembrane</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Daci_0832</name>
    </gene>
    <organism evidence="1 2">
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        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
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        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
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            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
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                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="2" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX33478.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012202764.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_0832"/>
    <dbReference type="PRIDE" id="A9BS68"/>
    <dbReference type="EnsemblBacteria" id="ABX33478">
        <property type="protein sequence ID" value="ABX33478"/>
        <property type="gene ID" value="Daci_0832"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_0832"/>
    <dbReference type="eggNOG" id="COG2913">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_090266_1_1_4"/>
    <dbReference type="OMA" id="PAHFSAY"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0449">Lipoprotein</keyword>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ABX33478.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="179" mass="20413" checksum="628ECA231232D93A" modified="2008-01-15" version="1">MTHLPALRFMPRWKMDGAGLVAWALLALAFSLLLAGCAVPEWQKPGTPRSEIERSMGRPTLSLPLDGGGTRLVYSRQPAGQQVYHMDFDASQRLVRVEQALTIERFHALRNGEDTRESVRQLFGPPALIERVYSFNGDIWTYRILENGIRRQAHVHIDPAGVVRRVMFTDEVFNDDDRR</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="30" xmlns="http://uniprot.org/uniprot">
    <accession>A9BSX9</accession>
    <name>A9BSX9_DELAS</name>
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        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Daci_1696</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="2" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX34339.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012203624.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="PRIDE" id="A9BSX9"/>
    <dbReference type="EnsemblBacteria" id="ABX34339">
        <property type="protein sequence ID" value="ABX34339"/>
        <property type="gene ID" value="Daci_1696"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_1696"/>
    <dbReference type="HOGENOM" id="CLU_1802976_0_0_4"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ABX34339.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="143" mass="15499" checksum="D72066B343CFF41F" modified="2008-01-15" version="1">MLTVEKSLLGKFDEHELAKCISAHGWQAALPDALKDHQLLLLSDQLRDLLAGKGWNSKHGDGSAALSLGLLLLSKAGASLPEDLSREADMASLHEVLTLLSISVDHEIVSRLLRREDGTSGAGFMQSLRELVQLNSLTEPFSM</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="76" xmlns="http://uniprot.org/uniprot">
    <accession>A9BT68</accession>
    <name>A9BT68_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Transcriptional regulator, IclR family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ordered locus">Daci_1993</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="6" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX34633.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012203918.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_1993"/>
    <dbReference type="PRIDE" id="A9BT68"/>
    <dbReference type="EnsemblBacteria" id="ABX34633">
        <property type="protein sequence ID" value="ABX34633"/>
        <property type="gene ID" value="Daci_1993"/>
    </dbReference>
    <dbReference type="GeneID" id="60686390"/>
    <dbReference type="KEGG" id="dac:Daci_1993"/>
    <dbReference type="eggNOG" id="COG1414">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_062618_6_2_4"/>
    <dbReference type="OMA" id="PMIRWSD"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006355">
        <property type="term" value="P:regulation of transcription, DNA-templated"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.450.40">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029016">
        <property type="entry name" value="GAF-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014757">
        <property type="entry name" value="Tscrpt_reg_IclR_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005471">
        <property type="entry name" value="Tscrpt_reg_IclR_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036390">
        <property type="entry name" value="WH_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF09339">
        <property type="entry name" value="HTH_IclR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01614">
        <property type="entry name" value="IclR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00346">
        <property type="entry name" value="HTH_ICLR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46785">
        <property type="entry name" value="SSF46785"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51077">
        <property type="entry name" value="HTH_ICLR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51078">
        <property type="entry name" value="ICLR_ED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0804">Transcription</keyword>
    <keyword evidence="1" id="KW-0805">Transcription regulation</keyword>
    <feature type="domain" description="HTH iclR-type" evidence="3">
        <location>
            <begin position="19"/>
            <end position="81"/>
        </location>
    </feature>
    <feature type="domain" description="IclR-ED" evidence="4">
        <location>
            <begin position="82"/>
            <end position="266"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023015"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023163"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="PROSITE" id="PS51077"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="PROSITE" id="PS51078"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="ABX34633.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="275" mass="30026" checksum="29A6DCD9B9E66983" modified="2008-01-15" version="1">MMTNTMNTRDPIPARIDGDTPNLRLFALLEAIAQKNEPFTLQTMVEETGLPKPTMHRMLQQLEGAGILQREGNGRHYGTGRRLMRLAESVLLNNTTHGARHAVLAQLVRDIGESCNITAFSGSEVLYLDRVETPAPLRFYLHPGSRVPAHCSATGKLFLSQMAPAQRRRLLSAVPLEGFTANTLTAFDALDAELDQVRAQGHAFDNEEFLPGLLCLGVLVPSIQGGPSNMGLAVQAPIMRFTRERALSFLPQLRAAAEAIARINDEVPPGAPDDD</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="69" xmlns="http://uniprot.org/uniprot">
    <accession>A9BT69</accession>
    <name>A9BT69_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Cobaltochelatase</fullName>
            <ecNumber evidence="2">6.6.1.2</ecNumber>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_1994</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EC" id="6.6.1.2" evidence="2"/>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX34634.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012203919.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_1994"/>
    <dbReference type="PRIDE" id="A9BT69"/>
    <dbReference type="EnsemblBacteria" id="ABX34634">
        <property type="protein sequence ID" value="ABX34634"/>
        <property type="gene ID" value="Daci_1994"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_1994"/>
    <dbReference type="eggNOG" id="COG0714">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_051316_1_0_4"/>
    <dbReference type="OMA" id="QVTEFQE"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016887">
        <property type="term" value="F:ATP hydrolysis activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051116">
        <property type="term" value="F:cobaltochelatase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003593">
        <property type="entry name" value="AAA+_ATPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011704">
        <property type="entry name" value="ATPase_dyneun-rel_AAA"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025865">
        <property type="entry name" value="CobS_N_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07728">
        <property type="entry name" value="AAA_5"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12556">
        <property type="entry name" value="CobS_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00382">
        <property type="entry name" value="AAA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0436">Ligase</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="AAA" evidence="1">
        <location>
            <begin position="60"/>
            <end position="206"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="SMART" id="SM00382"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX34634.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="325" mass="36339" checksum="2329DC675BEA4FAC" modified="2008-01-15" version="1">MTELTLMHPTRTLGVRETFDLDTDMQVPAFAERSEHVPAVDPAYRFNPQATLAILAGFAHNRRVVIQGLHGTGKSTHIEQVAARLNWPCVRVNLDGHISRLDLVGKDAIVLQEGRQVTQFQEGILPWALQRPVALVFDEYDAGRPDVMFVIQRVLEREGSFTLLDQKRVLQPHAQFRLFATMNTLGQGNLSGLYHGTQMLNHAQLDRWNLVTSLDYLAPAEEAAIVLARVPQLATPQGREQVAAMVALAALTRKGFAVGDLSLLMSPRTVITWAENAQIFHDLRLAFELSFLNKCEPAERAIVAEYFQRCFGQELALRDEPAHAC</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="54" xmlns="http://uniprot.org/uniprot">
    <accession>A9BT82</accession>
    <name>A9BT82_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Daci_2007</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="2" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX34647.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012203932.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_2007"/>
    <dbReference type="PRIDE" id="A9BT82"/>
    <dbReference type="EnsemblBacteria" id="ABX34647">
        <property type="protein sequence ID" value="ABX34647"/>
        <property type="gene ID" value="Daci_2007"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_2007"/>
    <dbReference type="eggNOG" id="COG3246">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_065536_2_0_4"/>
    <dbReference type="OMA" id="MEDPAVF"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016740">
        <property type="term" value="F:transferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0019475">
        <property type="term" value="P:L-lysine catabolic process to acetate"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.20.20.70">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013785">
        <property type="entry name" value="Aldolase_TIM"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008567">
        <property type="entry name" value="KCE_family"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37418">
        <property type="entry name" value="PTHR37418"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF05853">
        <property type="entry name" value="BKACE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ABX34647.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="352" mass="38597" checksum="4719B81F0F749877" modified="2008-01-15" version="1">MNFLDGHLFPENQQPLIITAAPYAPSWLPSDFPGEIAVTMDEQIQKAVDCYNAGATVLHLHVRELDGKGSKRLSKFNELIAGVRARVPEMIIQVGGSISFAPETDGAAAKWLSDDTRHMLAELEPVPDQVTVTINTSQMNFLEQFDARDIRGTSMEDPAVFNAYREMTVPAQPGWAEEHIRRLSAAGIQSAFQCYNINSFESVERLMRRGIYKGPLVMNWVAIGGGMDAPSIYSLANFVRAVPDGAVLTVESSVLNVLPVNMMGIAMGLHVRCGTEDNLWNQRRTAKMGTVAQIEQLVRIAGEFGRPIATAQQAREICRIGQFYGTVDETLAANGFAPNRNGAQQGFLRKAA</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="54" xmlns="http://uniprot.org/uniprot">
    <accession>A9BTF4</accession>
    <name>A9BTF4_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">SMP-30/Gluconolaconase/LRE domain protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_2283</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX34922.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012204205.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_2283"/>
    <dbReference type="PRIDE" id="A9BTF4"/>
    <dbReference type="EnsemblBacteria" id="ABX34922">
        <property type="protein sequence ID" value="ABX34922"/>
        <property type="gene ID" value="Daci_2283"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_2283"/>
    <dbReference type="eggNOG" id="COG3386">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_036110_0_1_4"/>
    <dbReference type="OMA" id="GMDGMRC"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.120.10.30">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011042">
        <property type="entry name" value="6-blade_b-propeller_TolB-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013658">
        <property type="entry name" value="SGL"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005511">
        <property type="entry name" value="SMP-30"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08450">
        <property type="entry name" value="SGL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR01790">
        <property type="entry name" value="SMP30FAMILY"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="SGL" evidence="1">
        <location>
            <begin position="21"/>
            <end position="295"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF08450"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX34922.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="317" mass="33733" checksum="4D20C73EB3DFE3A4" modified="2008-01-15" version="1">MTYTLQKTEPSLRALADGLEFPEGPVALPDGSVVLVEIANGWLTRVTADGTRRQLVHLGAGPNGAAIGPGGKLFICNNGGFQWHRSAEHGLRPIGQANDYSGGRIEAVDLASGQVECLYTQSGSGPLKGPNDLVFDRHGGFWFTDHGKVRPREVDRGGVCYALADGSAIREAVFPLWSPNGIGLSPDEKTLYVAETFTGRLWAFDIGELGHILARPWPDSPNGGRLVCRLPGMQNIDSLAVDAEGNICLATLGEGGITVVSPAGQVLHRVELPDPMTTNICFGGKDLKTAFVTLSSTGRLVALDWPCPGLPLNFLNR</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="59" xmlns="http://uniprot.org/uniprot">
    <accession>A9BTR4</accession>
    <name>A9BTR4_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="7">Conjugation TrbI family protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ordered locus">Daci_2690</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="8" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Single-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the TrbI/VirB10 family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX35328.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012204558.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_2690"/>
    <dbReference type="PRIDE" id="A9BTR4"/>
    <dbReference type="EnsemblBacteria" id="ABX35328">
        <property type="protein sequence ID" value="ABX35328"/>
        <property type="gene ID" value="Daci_2690"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_2690"/>
    <dbReference type="eggNOG" id="COG2948">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_042657_0_0_4"/>
    <dbReference type="OMA" id="DWHWDRV"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd16429">
        <property type="entry name" value="VirB10"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.128.260">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005498">
        <property type="entry name" value="T4SS_VirB10/TraB/TrbI"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR042217">
        <property type="entry name" value="T4SS_VirB10/TrbI"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03743">
        <property type="entry name" value="TrbI"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5 6" id="KW-0472">Membrane</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 6" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="4 6" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="38"/>
            <end position="57"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004167"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00010265"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="ABX35328.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="422" mass="44560" checksum="B28A30E0DAB06E8D" modified="2008-01-15" version="1">MSQDDSPDLAAQAGKVAPEAVALRAQPRPVTRLNRRTLAILVGVLSVAVLGATIWSLQPHRRGTGEQTELYNVDRVSKSEGLDGLPADYSKLPPKVPELGPPLPGDLGPAIVKSQQPVTPAYAQPGHDPADAWRKEADAAANSSVFFRSGNQGKATAPVTAQAAAAAPGSALAGFDPLAAGPASTAAQPSDPTAVQNRQDQKEAFLKGGSTETRNSGNLQMPASPYQVMAGTVIAGALVTGIKSDLPGDVIATVTEPVYDTATGKFLLIPQGSRILGKYNSQVSYGQSRVQVVWNRVILPDTSSLKLDNLAGTDPAGYSGLEDGVDWHWDRVFAGAALTTLLGVGAELAAPENRQDGNRIVIAGRDSAQDSINQVGQEMTRRNMNIQPTLTERPGLPVRIIVNRDFVLRPYQPMFFNRGIAK</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="44" xmlns="http://uniprot.org/uniprot">
    <accession>A9BTW1</accession>
    <name>A9BTW1_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Daci_2737</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="2" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX35375.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_003056215.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="PRIDE" id="A9BTW1"/>
    <dbReference type="EnsemblBacteria" id="ABX35375">
        <property type="protein sequence ID" value="ABX35375"/>
        <property type="gene ID" value="Daci_2737"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_2737"/>
    <dbReference type="eggNOG" id="ENOG5031DT5">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_2366755_0_0_4"/>
    <dbReference type="OMA" id="SSHHEWA"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ABX35375.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="92" mass="10264" checksum="19BDDE8797D67C28" modified="2008-01-15" version="1">MSSHHDYILEITAEHDAFKPFPPENGQPLRFALGDAVIYTNEFGAQFRCRVTGFYRPSGLSGLYARGARYLLDSSSPWMPVSEASLRPDDPA</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="54" xmlns="http://uniprot.org/uniprot">
    <accession>A9BTW8</accession>
    <name>A9BTW8_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Daci_2744</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="4" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX35382.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_003056224.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_2744"/>
    <dbReference type="PRIDE" id="A9BTW8"/>
    <dbReference type="EnsemblBacteria" id="ABX35382">
        <property type="protein sequence ID" value="ABX35382"/>
        <property type="gene ID" value="Daci_2744"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_2744"/>
    <dbReference type="eggNOG" id="COG4804">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_046640_1_1_4"/>
    <dbReference type="OMA" id="LTHQDVG"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003676">
        <property type="term" value="F:nucleic acid binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.1350.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011856">
        <property type="entry name" value="tRNA_endonuc-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009362">
        <property type="entry name" value="YhcG_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041527">
        <property type="entry name" value="YhcG_N"/>
    </dbReference>
    <dbReference type="Pfam" id="PF17761">
        <property type="entry name" value="DUF1016_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF06250">
        <property type="entry name" value="YhcG_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="DUF1016_N" evidence="2">
        <location>
            <begin position="27"/>
            <end position="179"/>
        </location>
    </feature>
    <feature type="domain" description="YhcG_C" evidence="1">
        <location>
            <begin position="206"/>
            <end position="358"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF06250"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF17761"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ABX35382.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="378" mass="42768" checksum="DABBAAB6DD4C27FC" modified="2008-01-15" version="1">MTKKAPAMAGVAPAAVPAGYAGIHGGIVDLLDAARQTAARSVNALMTASYWEIGRRIVEAEQQGKRRAGYGEQLIERLASDLTQQFGRGFSRQNLQQMRSFFLTRPIRQTVSGESSPEPVRPWRLDELAQVFTLPWSAYVRLLSVKDEHARQFYEAEALRGGWSVRQLDRQIGSQFYERTALSKNKAAMLAKGAVAKPEDAVAPGDAIKDPYVLEFLDLKDEYSESDLEAALIRRLEDFLLELGEGFTFIGRQRRLRIDQTWYRVDLLLFHRKLRCLVIIDLKLGSLTHADVGQMHMYCNYAKEHWAYPEENPPVGLILCADKGLALARYALEGLPTKVMAANYRMVLPDTDVLQKELESTRLLLESRGTIRPKTWKR</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="52" xmlns="http://uniprot.org/uniprot">
    <accession>A9BU36</accession>
    <name>A9BU36_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Putative cobalt transport system, periplasmic-binding protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_3113</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX35751.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012204952.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_3113"/>
    <dbReference type="PRIDE" id="A9BU36"/>
    <dbReference type="EnsemblBacteria" id="ABX35751">
        <property type="protein sequence ID" value="ABX35751"/>
        <property type="gene ID" value="Daci_3113"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_3113"/>
    <dbReference type="eggNOG" id="COG5266">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_096093_2_0_4"/>
    <dbReference type="OMA" id="WTEQRRG"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019613">
        <property type="entry name" value="DUF4198"/>
    </dbReference>
    <dbReference type="Pfam" id="PF10670">
        <property type="entry name" value="DUF4198"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="1">
        <location>
            <begin position="1"/>
            <end position="27"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5002735807" evidence="1">
        <location>
            <begin position="28"/>
            <end position="238"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX35751.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="238" mass="25358" checksum="D6D2619404F21892" modified="2008-01-15" version="1">MKSNPCFASVATAAFVVLLACAPLAQAHNVWLEPDADGAYTVQFGGHEGKLENFAAGKLKSVEAYDARGRRIDVAVQPVPGGARATPARKAALLAAHFDNGFFSRVGEGPMVEKPMTENPGATSGVHALKFHKTILEWGPVTREKLGQTLEIIAKTRRSPHAGEPQQFQVLLNGQPWAGVRVSLGEKGEPLETDADGLVTVLPRAGLNQLLAIVRLPVSGDARTTSLSYEYLLGFSAH</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="84" xmlns="http://uniprot.org/uniprot">
    <accession>A9BU55</accession>
    <name>A9BU55_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="4">Translation initiation factor IF-1</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="4" type="primary">infA</name>
        <name evidence="7" type="ordered locus">Daci_3132</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="8" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="4">One of the essential components for the initiation of protein synthesis. Stabilizes the binding of IF-2 and IF-3 on the 30S subunit to which N-formylmethionyl-tRNA(fMet) subsequently binds. Helps modulate mRNA selection, yielding the 30S pre-initiation complex (PIC). Upon addition of the 50S ribosomal subunit IF-1, IF-2 and IF-3 are released leaving the mature 70S translation initiation complex.</text>
    </comment>
    <comment type="subunit">
        <text evidence="4">Component of the 30S ribosomal translation pre-initiation complex which assembles on the 30S ribosome in the order IF-2 and IF-3, IF-1 and N-formylmethionyl-tRNA(fMet); mRNA recruitment can occur at any time during PIC assembly.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="4">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="4">Belongs to the IF-1 family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX35770.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012204971.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_3132"/>
    <dbReference type="PRIDE" id="A9BU55"/>
    <dbReference type="EnsemblBacteria" id="ABX35770">
        <property type="protein sequence ID" value="ABX35770"/>
        <property type="gene ID" value="Daci_3132"/>
    </dbReference>
    <dbReference type="GeneID" id="60687421"/>
    <dbReference type="KEGG" id="dac:Daci_3132"/>
    <dbReference type="eggNOG" id="COG0361">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_151267_4_1_4"/>
    <dbReference type="OMA" id="VLLENDH"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043022">
        <property type="term" value="F:ribosome binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0019843">
        <property type="term" value="F:rRNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003743">
        <property type="term" value="F:translation initiation factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd04451">
        <property type="entry name" value="S1_IF1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.50.140">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00075">
        <property type="entry name" value="IF_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012340">
        <property type="entry name" value="NA-bd_OB-fold"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006196">
        <property type="entry name" value="RNA-binding_domain_S1_IF1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004368">
        <property type="entry name" value="TIF_IF1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33370">
        <property type="entry name" value="PTHR33370"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01176">
        <property type="entry name" value="eIF-1a"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50249">
        <property type="entry name" value="SSF50249"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00008">
        <property type="entry name" value="infA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50832">
        <property type="entry name" value="S1_IF1_TYPE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="1 4 5" id="KW-0396">Initiation factor</keyword>
    <keyword evidence="4 5" id="KW-0648">Protein biosynthesis</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 4" id="KW-0694">RNA-binding</keyword>
    <keyword evidence="2 4" id="KW-0699">rRNA-binding</keyword>
    <feature type="domain" description="S1-like" evidence="6">
        <location>
            <begin position="1"/>
            <end position="72"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022540"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022730"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022884"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00075"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00181"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="PROSITE" id="PS50832"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="ABX35770.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="87" mass="10038" checksum="352F3DE69394A4A8" modified="2008-01-15" version="1">MAKEELIEMQGRVDEVLPDSRFRVTLENGHQLIAYTGGKMRKHRIRVLAGDKVTLEMSPYDLNKGRLTFRHIEQRSGAPGPRPPQRR</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2021-06-02" version="30" xmlns="http://uniprot.org/uniprot">
    <accession>A9BUA9</accession>
    <name>A9BUA9_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_1167</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX33812.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012203098.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="ABX33812">
        <property type="protein sequence ID" value="ABX33812"/>
        <property type="gene ID" value="Daci_1167"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_1167"/>
    <dbReference type="HOGENOM" id="CLU_1501154_0_0_4"/>
    <dbReference type="OMA" id="FASMSPC"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="84"/>
            <end position="102"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="162"/>
            <end position="178"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX33812.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="179" mass="19634" checksum="591EAC6076FAC37A" modified="2008-01-15" version="1">MSDTPNLSNSTPLKEQFKALLITKPDLTGIEWSDMETAIGPNAEKYRPLWERMVSGKKGFFASMSPCWTAIPFMGVSWAIARRVYAYAVVAFITLLIINLLMPGTGGAGRVLGIAVAISFTVKRTYLQWLITRIQQINQRGLVGAAREEALRQIGGLDQKDGWISFGVLLAIGIVLAAF</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="57" xmlns="http://uniprot.org/uniprot">
    <accession>A9BUE5</accession>
    <name>A9BUE5_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Daci_1203</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="2" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX33848.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012203134.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_1203"/>
    <dbReference type="PRIDE" id="A9BUE5"/>
    <dbReference type="EnsemblBacteria" id="ABX33848">
        <property type="protein sequence ID" value="ABX33848"/>
        <property type="gene ID" value="Daci_1203"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_1203"/>
    <dbReference type="eggNOG" id="COG3193">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_103773_0_1_4"/>
    <dbReference type="OMA" id="YTAVSWN"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.450.150">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005624">
        <property type="entry name" value="PduO/GlcC-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038084">
        <property type="entry name" value="PduO/GlcC-like_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03928">
        <property type="entry name" value="Haem_degrading"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF143744">
        <property type="entry name" value="SSF143744"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ABX33848.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="196" mass="19860" checksum="2499D9D8CA5DBEF9" modified="2008-01-15" version="1">MVRGGGIFYSACMPSGLVARAVLTPKEKTMQRHATKLATLAALTLGLITTAAQAEAVRTEKNMSLELANQIAARSVAACAADGYAVTATVVDRAGTVRAVQRADNAGPHTLEASRLKAYTAASAKNSTLAIMEGAQKNPGAANLVNIPGYLLLGGGLPVKVGNEVIGAVGIGGAPGGHLDDKCAQTALGQVQDLLK</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="60" xmlns="http://uniprot.org/uniprot">
    <accession>A9BUJ9</accession>
    <name>A9BUJ9_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="6">Cell division protein FtsL</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="6" type="primary">ftsL</name>
        <name evidence="7" type="ordered locus">Daci_1463</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="8" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="6">Essential cell division protein. May link together the upstream cell division proteins, which are predominantly cytoplasmic, with the downstream cell division proteins, which are predominantly periplasmic.</text>
    </comment>
    <comment type="subunit">
        <text evidence="6">Part of a complex composed of FtsB, FtsL and FtsQ.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="6">Cell inner membrane</location>
            <topology evidence="6">Single-pass type II membrane protein</topology>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Single-pass type II membrane protein</topology>
        </subcellularLocation>
        <text evidence="6">Localizes to the division septum where it forms a ring structure.</text>
    </comment>
    <comment type="similarity">
        <text evidence="6">Belongs to the FtsL family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX34107.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012203393.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_1463"/>
    <dbReference type="PRIDE" id="A9BUJ9"/>
    <dbReference type="EnsemblBacteria" id="ABX34107">
        <property type="protein sequence ID" value="ABX34107"/>
        <property type="gene ID" value="Daci_1463"/>
    </dbReference>
    <dbReference type="GeneID" id="60686004"/>
    <dbReference type="KEGG" id="dac:Daci_1463"/>
    <dbReference type="eggNOG" id="COG3116">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_156524_0_0_4"/>
    <dbReference type="OMA" id="DWSRLQY"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0032153">
        <property type="term" value="C:cell division site"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005887">
        <property type="term" value="C:integral component of plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043093">
        <property type="term" value="P:FtsZ-dependent cytokinesis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00910">
        <property type="entry name" value="FtsL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011922">
        <property type="entry name" value="Cell_div_FtsL"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04999">
        <property type="entry name" value="FtsL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR02209">
        <property type="entry name" value="ftsL_broad"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="6" id="KW-0131">Cell cycle</keyword>
    <keyword evidence="6 7" id="KW-0132">Cell division</keyword>
    <keyword evidence="6" id="KW-0997">Cell inner membrane</keyword>
    <keyword evidence="2 6" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="5 6" id="KW-0472">Membrane</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 6" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="4 6" id="KW-1133">Transmembrane helix</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004606"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00910"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="ABX34107.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="94" mass="10745" checksum="FACC12B8B8923CE4" modified="2008-01-15" version="1">MLRLNLVLLLAVMASAIFLVHNQYESRRLFTELDRAVAESRRLATEQQRLQVEKRAQATPQRIEVMARERLQMKPATPAIAQYVNDDARTGVAP</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="53" xmlns="http://uniprot.org/uniprot">
    <accession>A9BUN5</accession>
    <name>A9BUN5_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_1499</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX34143.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012203429.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_1499"/>
    <dbReference type="PRIDE" id="A9BUN5"/>
    <dbReference type="EnsemblBacteria" id="ABX34143">
        <property type="protein sequence ID" value="ABX34143"/>
        <property type="gene ID" value="Daci_1499"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_1499"/>
    <dbReference type="eggNOG" id="COG3064">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_851843_0_0_4"/>
    <dbReference type="OMA" id="FPTGNRP"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="318"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="10"/>
            <end position="28"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX34143.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="318" mass="29117" checksum="FF1BC634D59B2063" modified="2008-01-15" version="1">MATAKKTASTKAPTDKKTTAKKAAAPKAETVKKTTATAKAAPVKKAAAPAVKKAAAPAAKKAAAPAAKKAAAPAKKAAAPAAKKAAAPAKKAAAPAAKKAAAPAKKAAAPAAKKAAAPAKKAAAPAAKKAAAPAKKAAAPAAKKAAAPAKKAAAPAKKAAAPAAKKAAAPAKKAAAPAAKKAAAPAKKAAAPAAKKAAAPAKKAAAPAAKKAAAPAATKAAAPAAKKAAAPAKKAAAPAAAKKPAAAAKPAAAPAKAAAAPAAPAKKAAAPKKAAAPKKAAAAPAAAAPAAPAAAPAPIAQTRLAPQAAWPFPTGNKP</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="101" xmlns="http://uniprot.org/uniprot">
    <accession>A9BUN9</accession>
    <name>A9BUN9_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="9">Two component, sigma54 specific, transcriptional regulator, Fis family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="9" type="ordered locus">Daci_1503</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="9 10" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="10" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX34147.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012203433.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_1503"/>
    <dbReference type="PRIDE" id="A9BUN9"/>
    <dbReference type="EnsemblBacteria" id="ABX34147">
        <property type="protein sequence ID" value="ABX34147"/>
        <property type="gene ID" value="Daci_1503"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_1503"/>
    <dbReference type="eggNOG" id="COG2204">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_000445_0_6_4"/>
    <dbReference type="OMA" id="QAPIYIS"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043565">
        <property type="term" value="F:sequence-specific DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000160">
        <property type="term" value="P:phosphorelay signal transduction system"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006355">
        <property type="term" value="P:regulation of transcription, DNA-templated"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003593">
        <property type="entry name" value="AAA+_ATPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011006">
        <property type="entry name" value="CheY-like_superfamily"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009057">
        <property type="entry name" value="Homeobox-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002197">
        <property type="entry name" value="HTH_Fis"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001789">
        <property type="entry name" value="Sig_transdc_resp-reg_receiver"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002078">
        <property type="entry name" value="Sigma_54_int"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025662">
        <property type="entry name" value="Sigma_54_int_dom_ATP-bd_1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02954">
        <property type="entry name" value="HTH_8"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00072">
        <property type="entry name" value="Response_reg"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00158">
        <property type="entry name" value="Sigma54_activat"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR01590">
        <property type="entry name" value="HTHFIS"/>
    </dbReference>
    <dbReference type="SMART" id="SM00382">
        <property type="entry name" value="AAA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00448">
        <property type="entry name" value="REC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46689">
        <property type="entry name" value="SSF46689"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52172">
        <property type="entry name" value="SSF52172"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50110">
        <property type="entry name" value="RESPONSE_REGULATORY"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00675">
        <property type="entry name" value="SIGMA54_INTERACT_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50045">
        <property type="entry name" value="SIGMA54_INTERACT_4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="1" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="5" id="KW-0597">Phosphoprotein</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4" id="KW-0804">Transcription</keyword>
    <keyword evidence="3" id="KW-0805">Transcription regulation</keyword>
    <feature type="domain" description="Response regulatory" evidence="8">
        <location>
            <begin position="11"/>
            <end position="125"/>
        </location>
    </feature>
    <feature type="domain" description="Sigma-54 factor interaction" evidence="7">
        <location>
            <begin position="161"/>
            <end position="390"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="6">
        <location>
            <begin position="395"/>
            <end position="445"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Pro residues" evidence="6">
        <location>
            <begin position="406"/>
            <end position="440"/>
        </location>
    </feature>
    <feature type="modified residue" description="4-aspartylphosphate" evidence="5">
        <location>
            <position position="60"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023015"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023163"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00169"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="PROSITE" id="PS50045"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="PROSITE" id="PS50110"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="ABX34147.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="513" mass="55142" checksum="4382104E6F7E3EF2" modified="2008-01-15" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="70" xmlns="http://uniprot.org/uniprot">
    <accession>A9BUY0</accession>
    <name>A9BUY0_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="6">Peptidase M16 domain protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ordered locus">Daci_1800</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="7" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the peptidase M16 family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX34442.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012203727.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_1800"/>
    <dbReference type="MEROPS" id="M16.019"/>
    <dbReference type="PRIDE" id="A9BUY0"/>
    <dbReference type="EnsemblBacteria" id="ABX34442">
        <property type="protein sequence ID" value="ABX34442"/>
        <property type="gene ID" value="Daci_1800"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_1800"/>
    <dbReference type="eggNOG" id="COG0612">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_009902_1_0_4"/>
    <dbReference type="OMA" id="FFEHLLF"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011249">
        <property type="entry name" value="Metalloenz_LuxS/M16"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011765">
        <property type="entry name" value="Pept_M16_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007863">
        <property type="entry name" value="Peptidase_M16_C"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00675">
        <property type="entry name" value="Peptidase_M16"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF05193">
        <property type="entry name" value="Peptidase_M16_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF63411">
        <property type="entry name" value="SSF63411"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="3">
        <location>
            <begin position="1"/>
            <end position="21"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5002735112" evidence="3">
        <location>
            <begin position="22"/>
            <end position="492"/>
        </location>
    </feature>
    <feature type="domain" description="Peptidase_M16" evidence="4">
        <location>
            <begin position="67"/>
            <end position="207"/>
        </location>
    </feature>
    <feature type="domain" description="Peptidase_M16_C" evidence="5">
        <location>
            <begin position="216"/>
            <end position="402"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="469"/>
            <end position="492"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00007261"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="Pfam" id="PF00675"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="Pfam" id="PF05193"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="ABX34442.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="492" mass="53181" checksum="B4C49EF69DD7DB2D" modified="2008-01-15" version="1">MKHALTLLGLMACMGTGAALAAPDASSSIPSSLLQTVASQAAGGTRTATSAQQFTLKNGMQLIVQPDRRAPTAVHMVWVRVGSVDEVDGTSGVAHALEHMMFKGSRKVAPGEFSRRVAALGGQENAFTSRDYTGYYQQIPSSRLEDVMKLESDRFANNHWPDSEFKKEIEVIKEERRMRTEDQPRAVLMEQLMAATFVASPYHRPVIGWMSDLDALTPGDVRDFHGRWYVPGNATIVIAGDVDVAKVRAWAEKYYGSIPARALPVRKPRTEPAQIGIRRIEVKQPAEQALVALAFRAPSLTRVSDLQADDRDALALLVLSAVLDGYDGARLERALVQGEGRVADGAGSSMSLMGRGPGLFMLTGVPATGKTAAEVEAALRAEVAKVAKDGVEPAELERVKTQWMASNVYERDSVMGQAQSLGNYWIQGMPLDAEDQLLTQLRTITPDDVKRVAAKYFGDDQLTVGTLVPQPLPEGGKPRRPDAGAAIGGPLH</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="81" xmlns="http://uniprot.org/uniprot">
    <accession>A9BV88</accession>
    <name>A9BV88_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Transcriptional regulator, LysR family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Daci_2112</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="4" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the LysR transcriptional regulatory family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX34752.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012204035.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_2112"/>
    <dbReference type="PRIDE" id="A9BV88"/>
    <dbReference type="EnsemblBacteria" id="ABX34752">
        <property type="protein sequence ID" value="ABX34752"/>
        <property type="gene ID" value="Daci_2112"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_2112"/>
    <dbReference type="eggNOG" id="COG0583">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_039613_16_2_4"/>
    <dbReference type="OMA" id="GEIAVNW"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003700">
        <property type="term" value="F:DNA-binding transcription factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005119">
        <property type="entry name" value="LysR_subst-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000847">
        <property type="entry name" value="Tscrpt_reg_HTH_LysR"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036390">
        <property type="entry name" value="WH_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00126">
        <property type="entry name" value="HTH_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03466">
        <property type="entry name" value="LysR_substrate"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46785">
        <property type="entry name" value="SSF46785"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50931">
        <property type="entry name" value="HTH_LYSR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HTH lysR-type" evidence="2">
        <location>
            <begin position="14"/>
            <end position="63"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00009437"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS50931"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ABX34752.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="307" mass="33666" checksum="9A962EA1C81DC033" modified="2008-01-15" version="1">MSTPVSAPSEMAFFCLLARSASLSATARELGITTPAASKRLSQMEARLGVQLVSRTTRRLGLTDEGQTYLAHARRILDDIAAMEQAVAGMPGQPQGLLRINATLGFGRSHIAPLIASFVRRHPQIQVQLQLSASPPPLVDDSFDLCIRFGEPPDARVIARRLAPNRRLLCASAAYLARRGTPATPRELMQHDCIDIRQGDDTHGVWRFTHNGPGRKTEAIRLRDSLSTNDGEIAVGWALAGLGIVMRAEWDVARYLRSGRLVQVLADHATAPADIHVVYPQRHAATQRVQRFVEHLARHFDTAAPGF</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="53" xmlns="http://uniprot.org/uniprot">
    <accession>A9BVF6</accession>
    <name>A9BVF6_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">DUF58 domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="4" type="ordered locus">Daci_2385</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="5" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX35023.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012204305.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_2385"/>
    <dbReference type="PRIDE" id="A9BVF6"/>
    <dbReference type="EnsemblBacteria" id="ABX35023">
        <property type="protein sequence ID" value="ABX35023"/>
        <property type="gene ID" value="Daci_2385"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_2385"/>
    <dbReference type="eggNOG" id="COG1721">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_054568_0_1_4"/>
    <dbReference type="OMA" id="TAETRFP"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002881">
        <property type="entry name" value="DUF58"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01882">
        <property type="entry name" value="DUF58"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0472">Membrane</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="2" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="56"/>
            <end position="74"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="80"/>
            <end position="101"/>
        </location>
    </feature>
    <feature type="domain" description="DUF58" evidence="3">
        <location>
            <begin position="234"/>
            <end position="293"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="20"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF01882"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="ABX35023.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="344" mass="37305" checksum="FE5FD90BCFB35FAA" modified="2008-01-15" version="1">MPAAPASSPGAARPGASLRQRWSPARRVRQWWHARLPRTDSLKLTQRNVYIMPSRAGWALALTLCVLLVAAINYQLNLGYLLTFLLAGSAAAGMVVGHGNLRGLALHLLPPAGSFAGQPCRFDVVLHNTRRSTRWGIGLAVQGDTAAIDWTWIDVPAQGSTTAQLAFTPLRRGLQSLPTITAATRYPLGTFRVWALWRAQTQAWIYPAPEHNPPPLPAASADAGGRSAASTRHGDEFDGVRAYRRGDALKLVVWKKAAQAFATGSDQLVSRDRPLSQQHRLWLDAKATGLADPEARLSRLTAWVLVARQQDLTWGLRLPDGREIAPDQGAAHATLCLEALAACP</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="95" xmlns="http://uniprot.org/uniprot">
    <accession>A9BVJ3</accession>
    <name>A9BVJ3_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="5 7">Citrate synthase</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="9" type="ordered locus">Daci_2422</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="9 10" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="10" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="1 7">
            <text>acetyl-CoA + H2O + oxaloacetate = citrate + CoA + H(+)</text>
            <dbReference type="Rhea" id="RHEA:16845"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:16452"/>
            <dbReference type="ChEBI" id="CHEBI:16947"/>
            <dbReference type="ChEBI" id="CHEBI:57287"/>
            <dbReference type="ChEBI" id="CHEBI:57288"/>
            <dbReference type="EC" id="2.3.3.16"/>
        </reaction>
    </comment>
    <comment type="pathway">
        <text evidence="2 7">Carbohydrate metabolism; tricarboxylic acid cycle; isocitrate from oxaloacetate: step 1/2.</text>
    </comment>
    <comment type="similarity">
        <text evidence="3 5 8">Belongs to the citrate synthase family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX35060.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012204342.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_2422"/>
    <dbReference type="PRIDE" id="A9BVJ3"/>
    <dbReference type="EnsemblBacteria" id="ABX35060">
        <property type="protein sequence ID" value="ABX35060"/>
        <property type="gene ID" value="Daci_2422"/>
    </dbReference>
    <dbReference type="GeneID" id="60686792"/>
    <dbReference type="KEGG" id="dac:Daci_2422"/>
    <dbReference type="eggNOG" id="COG0372">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_025068_0_0_4"/>
    <dbReference type="OMA" id="TVGWCAQ"/>
    <dbReference type="UniPathway" id="UPA00223">
        <property type="reaction ID" value="UER00717"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004108">
        <property type="term" value="F:citrate (Si)-synthase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006099">
        <property type="term" value="P:tricarboxylic acid cycle"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniPathway"/>
    </dbReference>
    <dbReference type="CDD" id="cd06114">
        <property type="entry name" value="EcCS_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.230.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.580.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016142">
        <property type="entry name" value="Citrate_synth-like_lrg_a-sub"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016143">
        <property type="entry name" value="Citrate_synth-like_sm_a-sub"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002020">
        <property type="entry name" value="Citrate_synthase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019810">
        <property type="entry name" value="Citrate_synthase_AS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR024176">
        <property type="entry name" value="Citrate_synthase_bac-typ"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036969">
        <property type="entry name" value="Citrate_synthase_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010953">
        <property type="entry name" value="Citrate_synthase_typ-I"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00285">
        <property type="entry name" value="Citrate_synt"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF001369">
        <property type="entry name" value="Citrate_synth"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00143">
        <property type="entry name" value="CITRTSNTHASE"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48256">
        <property type="entry name" value="SSF48256"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01798">
        <property type="entry name" value="cit_synth_I"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00480">
        <property type="entry name" value="CITRATE_SYNTHASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="9" id="KW-0012">Acyltransferase</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4 5 7" id="KW-0808">Transferase</keyword>
    <keyword evidence="7" id="KW-0816">Tricarboxylic acid cycle</keyword>
    <feature type="active site" evidence="6">
        <location>
            <position position="313"/>
        </location>
    </feature>
    <feature type="active site" evidence="6">
        <location>
            <position position="371"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00000308"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00004751"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00010566"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="PIRNR" id="PIRNR001369"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="PIRSR" id="PIRSR001369-1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="RuleBase" id="RU003370"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="RuleBase" id="RU003406"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="ABX35060.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="436" mass="48508" checksum="3A70B755794F42FC" modified="2008-01-15" version="1">MKLADNKATLSFSNGAPSVELPVYQGNVGPDVVDIRKLYAQTGMFTYDPGFLSTASCQSAITYIDGDKGELLYRGYPIEQLAKNCDYLETCYLLLYGELPNESEKADFVERVTKHTMVNEQMQFFLRGFRRDAHPMAVLTGLVGGMSAFYHDNMDINNAEHRDIAAIRLIAKMPTLVSMAYKYGIGAPYMYPKNDLSYAGNFMRMMFGNPCEEFKVNPVVERALDRIFILHADHEQNASTSTVRLCGSSGTNPFAAISAGVACLWGPAHGGANEACLNMLEYLQANGGVAKVGEFMEQVKDKNSGVKLMGFGHRVYKNYDPRAKLMQETCNEVLAELGLEKDPLFALAKEVEKIALEDDYFVQRKLYPNVDFYSGIVQRAIGVPVNLFTGIFALARTVGWIAQLNEQMADPEYKIGRPRQLFTGSVSRDVKPIGQR</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="105" xmlns="http://uniprot.org/uniprot">
    <accession>A9BVT1</accession>
    <name>A9BVT1_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="3 7">Cobyric acid synthase</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="7" type="primary">cobQ</name>
        <name evidence="10" type="ordered locus">Daci_2806</name>
    </gene>
    <organism evidence="10 11">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="10 11" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="11">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="11" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="11">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="6 7">Catalyzes amidations at positions B, D, E, and G on adenosylcobyrinic A,C-diamide. NH(2) groups are provided by glutamine, and one molecule of ATP is hydrogenolyzed for each amidation.</text>
    </comment>
    <comment type="pathway">
        <text evidence="1 7">Cofactor biosynthesis; adenosylcobalamin biosynthesis.</text>
    </comment>
    <comment type="similarity">
        <text evidence="2 7">Belongs to the CobB/CobQ family. CobQ subfamily.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX35444.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012204654.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_2806"/>
    <dbReference type="PRIDE" id="A9BVT1"/>
    <dbReference type="EnsemblBacteria" id="ABX35444">
        <property type="protein sequence ID" value="ABX35444"/>
        <property type="gene ID" value="Daci_2806"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_2806"/>
    <dbReference type="eggNOG" id="COG1492">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_019250_2_1_4"/>
    <dbReference type="OMA" id="DVRMNPL"/>
    <dbReference type="UniPathway" id="UPA00148"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015420">
        <property type="term" value="F:ABC-type vitamin B12 transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003824">
        <property type="term" value="F:catalytic activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009236">
        <property type="term" value="P:cobalamin biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniPathway"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006541">
        <property type="term" value="P:glutamine metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd01750">
        <property type="entry name" value="GATase1_CobQ"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.880">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00028">
        <property type="entry name" value="CobQ"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029062">
        <property type="entry name" value="Class_I_gatase-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002586">
        <property type="entry name" value="CobQ/CobB/MinD/ParA_Nub-bd_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR033949">
        <property type="entry name" value="CobQ_GATase1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004459">
        <property type="entry name" value="CobQ_synth"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011698">
        <property type="entry name" value="GATase_3"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR21343:SF1">
        <property type="entry name" value="PTHR21343:SF1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01656">
        <property type="entry name" value="CbiA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07685">
        <property type="entry name" value="GATase_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52317">
        <property type="entry name" value="SSF52317"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00313">
        <property type="entry name" value="cobQ"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4 7" id="KW-0169">Cobalamin biosynthesis</keyword>
    <keyword evidence="5 7" id="KW-0315">Glutamine amidotransferase</keyword>
    <keyword evidence="11" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="CbiA" evidence="8">
        <location>
            <begin position="24"/>
            <end position="249"/>
        </location>
    </feature>
    <feature type="domain" description="GATase_3" evidence="9">
        <location>
            <begin position="278"/>
            <end position="469"/>
        </location>
    </feature>
    <feature type="active site" description="Nucleophile" evidence="7">
        <location>
            <position position="357"/>
        </location>
    </feature>
    <feature type="active site" evidence="7">
        <location>
            <position position="462"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004953"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00006205"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00019833"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022573"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022962"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00025166"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00028"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="Pfam" id="PF01656"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="9">
        <source>
            <dbReference type="Pfam" id="PF07685"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="EMBL" id="ABX35444.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="501" mass="52830" checksum="37655981EBAC70DA" modified="2008-01-15" version="1">MQSNEPAAVNLPLPTPGRRPALCVMVLGTSSGAGKSWVATALCAWYRAQGYKVAPFKAQNMSNNARVVSAPGGAWGEIGTAQYLQALAAGCAPDVRMNPLLLKPEADMRSQVVLLGRVSEELSALPWRGRSARVWPQIAEALDSLRADNDVVVIEGAGSPAEINLHASDVVNMRVARHCGAHCLLVSDIDRGGAFAHLYGTWALLPPEEQALIRGFVLNKFRGDASLLAPAPQMLQERTGVPTVATIPMQFQHGLPEEDGVFDDRGSGGGAGRAVHTTIAIVAYPRISNLDEFQPLLQVPGLRVVWARTPAQLVGANWIILPGSKATAADLAWMRTQGLDAAVAAHAAAGRQVLGICGGLQMLGEALIDLHGVDGNAAGLGLLPLTTLFAPDKTVLPASVQLPPLPGALAPLSGVQAQVYEIHHGQTSVRPDMVAAGSAVAEPVPGLLWHSPDGLIAGCYWHGLFENAEVLRALWGAEVPTLDSVFARMAEGVQRWFAHQA</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-05-25" version="81" xmlns="http://uniprot.org/uniprot">
    <accession>A9BVW4</accession>
    <name>A9BVW4_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Transcriptional regulator, AsnC family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ordered locus">Daci_2839</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="6" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX35477.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_2839"/>
    <dbReference type="EnsemblBacteria" id="ABX35477">
        <property type="protein sequence ID" value="ABX35477"/>
        <property type="gene ID" value="Daci_2839"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_2839"/>
    <dbReference type="eggNOG" id="COG1522">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_091233_0_1_4"/>
    <dbReference type="OMA" id="RLIFQQW"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043565">
        <property type="term" value="F:sequence-specific DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006355">
        <property type="term" value="P:regulation of transcription, DNA-templated"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="CDD" id="cd00090">
        <property type="entry name" value="HTH_ARSR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011991">
        <property type="entry name" value="ArsR-like_HTH"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000485">
        <property type="entry name" value="AsnC-type_HTH_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011008">
        <property type="entry name" value="Dimeric_a/b-barrel"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019888">
        <property type="entry name" value="Tscrpt_reg_AsnC-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019887">
        <property type="entry name" value="Tscrpt_reg_AsnC/Lrp_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036390">
        <property type="entry name" value="WH_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01037">
        <property type="entry name" value="AsnC_trans_reg"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00033">
        <property type="entry name" value="HTHASNC"/>
    </dbReference>
    <dbReference type="SMART" id="SM00344">
        <property type="entry name" value="HTH_ASNC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46785">
        <property type="entry name" value="SSF46785"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54909">
        <property type="entry name" value="SSF54909"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50956">
        <property type="entry name" value="HTH_ASNC_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0804">Transcription</keyword>
    <keyword evidence="1" id="KW-0805">Transcription regulation</keyword>
    <feature type="domain" description="HTH asnC-type" evidence="4">
        <location>
            <begin position="33"/>
            <end position="94"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023015"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023163"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="PROSITE" id="PS50956"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="ABX35477.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="192" mass="21618" checksum="C1BD6311A31C9EBA" modified="2008-01-15" version="1">MQKARFGASSRNIRSFRPPRPRFLLLPMPAIALDTFDRAILDVLQRDNLTPQRLIAEQVHLSAPAVQRRIRRLQELGVITANVAVVDPVRTGRPLTVLINVQLANERPDLSLAFRARVAREPAVQQCYYVTGEADYSLIVTAADMQEYQALAARLFSGDDNIRRYTTSIALERIKTGLQLPMAEHKPDNETS</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="95" xmlns="http://uniprot.org/uniprot">
    <accession>A9BVX6</accession>
    <name>A9BVX6_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">Histidine kinase</fullName>
            <ecNumber evidence="2">2.7.13.3</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="10" type="ordered locus">Daci_2851</name>
    </gene>
    <organism evidence="10 11">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="10 11" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="11">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="11" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="11">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>ATP + protein L-histidine = ADP + protein N-phospho-L-histidine.</text>
            <dbReference type="EC" id="2.7.13.3"/>
        </reaction>
    </comment>
    <dbReference type="EC" id="2.7.13.3" evidence="2"/>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX35489.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012204699.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_2851"/>
    <dbReference type="PRIDE" id="A9BVX6"/>
    <dbReference type="EnsemblBacteria" id="ABX35489">
        <property type="protein sequence ID" value="ABX35489"/>
        <property type="gene ID" value="Daci_2851"/>
    </dbReference>
    <dbReference type="GeneID" id="60687114"/>
    <dbReference type="KEGG" id="dac:Daci_2851"/>
    <dbReference type="eggNOG" id="COG2205">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_000445_89_27_4"/>
    <dbReference type="OMA" id="SLFWRTF"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000155">
        <property type="term" value="F:phosphorelay sensor kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd00082">
        <property type="entry name" value="HisKA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.450.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.565.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003660">
        <property type="entry name" value="HAMP_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003594">
        <property type="entry name" value="HATPase_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036890">
        <property type="entry name" value="HATPase_C_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005467">
        <property type="entry name" value="His_kinase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003661">
        <property type="entry name" value="HisK_dim/P"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036097">
        <property type="entry name" value="HisK_dim/P_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR032408">
        <property type="entry name" value="RisS_PPD"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038421">
        <property type="entry name" value="RisS_PPD_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004358">
        <property type="entry name" value="Sig_transdc_His_kin-like_C"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00672">
        <property type="entry name" value="HAMP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02518">
        <property type="entry name" value="HATPase_c"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF16524">
        <property type="entry name" value="RisS_PPD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00344">
        <property type="entry name" value="BCTRLSENSOR"/>
    </dbReference>
    <dbReference type="SMART" id="SM00304">
        <property type="entry name" value="HAMP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00387">
        <property type="entry name" value="HATPase_c"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00388">
        <property type="entry name" value="HisKA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47384">
        <property type="entry name" value="SSF47384"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55874">
        <property type="entry name" value="SSF55874"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50885">
        <property type="entry name" value="HAMP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50109">
        <property type="entry name" value="HIS_KIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="5 10" id="KW-0418">Kinase</keyword>
    <keyword evidence="7" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-0597">Phosphoprotein</keyword>
    <keyword evidence="11" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4" id="KW-0808">Transferase</keyword>
    <keyword evidence="7" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="7" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="33"/>
            <end position="53"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="179"/>
            <end position="201"/>
        </location>
    </feature>
    <feature type="domain" description="HAMP" evidence="9">
        <location>
            <begin position="199"/>
            <end position="253"/>
        </location>
    </feature>
    <feature type="domain" description="Histidine kinase" evidence="8">
        <location>
            <begin position="261"/>
            <end position="466"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="6">
        <location>
            <begin position="467"/>
            <end position="500"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00000085"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00012438"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022553"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022777"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="PROSITE" id="PS50109"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="9">
        <source>
            <dbReference type="PROSITE" id="PS50885"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="EMBL" id="ABX35489.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="500" mass="55156" checksum="AA6620E8848ACF02" modified="2008-01-15" version="1">MSSFTVPPHDATSPAPLDYERRMTARSPLGLNLFWRTFCLLALLLVGSILAWLQTLRAFEFEPRTLHTAQQIASLVNLSRAALVHSDAINRVSLIKTMADQEGVRILPREPGDSFELLDQSTLGKRLTEELTRRLGYGTIVARSVNGEPGLWVGFTINGDRTWLLMDRSRFTPASGRTWLIWLITAGLLSLAGAAAIARLINRPLKQLSYAANRVRDGDFDASQLDEEAVTSEIREVNIGFNRMAQKLAQLEQDRAVMLAGISHDLRTPLARLRLETEMSVVDDVAREHMVADIVQLDATIDKFLDYARPDHVTLNPVNLHAVVSSCVYAVQDHRELQISMAVPEGVYVLADEVELARVISNLFENARRYGKTPETETTHVDVTASERESWVVIRIRDHGRGVPPEQLASLTQPFFRGDSARTAAAGAGLGLSIVDKTVQRMGGVFALSNSSTGGLVAHVQLQRASGVAKGAEPEQRLQRPQIKRQLPPRAQDGALDGED</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="66" xmlns="http://uniprot.org/uniprot">
    <accession>A9BW10</accession>
    <name>A9BW10_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Transcriptional regulator, XRE family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_3188</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX35826.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012205026.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_3188"/>
    <dbReference type="PRIDE" id="A9BW10"/>
    <dbReference type="EnsemblBacteria" id="ABX35826">
        <property type="protein sequence ID" value="ABX35826"/>
        <property type="gene ID" value="Daci_3188"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_3188"/>
    <dbReference type="eggNOG" id="COG1396">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_085376_5_1_4"/>
    <dbReference type="OMA" id="EVELWEW"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd00093">
        <property type="entry name" value="HTH_XRE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.260.40">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.120.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001387">
        <property type="entry name" value="Cro/C1-type_HTH"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010982">
        <property type="entry name" value="Lambda_DNA-bd_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014710">
        <property type="entry name" value="RmlC-like_jellyroll"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011051">
        <property type="entry name" value="RmlC_Cupin_sf"/>
    </dbReference>
    <dbReference type="SMART" id="SM00530">
        <property type="entry name" value="HTH_XRE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47413">
        <property type="entry name" value="SSF47413"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51182">
        <property type="entry name" value="SSF51182"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50943">
        <property type="entry name" value="HTH_CROC1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HTH cro/C1-type" evidence="1">
        <location>
            <begin position="22"/>
            <end position="76"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS50943"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX35826.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="189" mass="20739" checksum="B69ED2A8D4A2FD21" modified="2008-01-15" version="1">MRNILHSAGERSDVLAFVSENLRRLRQRAGLSQAALAQAAGLSRRMVVQLEGGDTNISLSSLDRLADALGASFIEIVSDPAAQRLRMDAMAWRGTRPESQAMLLGSVPATREAQLWSWSLGPGERYQAQPDPEGWHEMIVVVEGRLLVDLSEGPMTIEAGDYAIYGSAQDYAYVNLHEGVTRFIRNVIS</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-05-25" version="57" xmlns="http://uniprot.org/uniprot">
    <accession>A9BW12</accession>
    <name>A9BW12_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Aspartyl/Asparaginyl beta-hydroxylase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_3190</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX35828.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012205028.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_3190"/>
    <dbReference type="EnsemblBacteria" id="ABX35828">
        <property type="protein sequence ID" value="ABX35828"/>
        <property type="gene ID" value="Daci_3190"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_3190"/>
    <dbReference type="eggNOG" id="COG1917">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_092409_0_0_4"/>
    <dbReference type="OMA" id="IHEHRDY"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0018193">
        <property type="term" value="P:peptidyl-amino acid modification"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.120.330">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007803">
        <property type="entry name" value="Asp/Arg/Pro-Hydrxlase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027443">
        <property type="entry name" value="IPNS-like_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF05118">
        <property type="entry name" value="Asp_Arg_Hydrox"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Asp_Arg_Hydrox" evidence="1">
        <location>
            <begin position="31"/>
            <end position="195"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF05118"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX35828.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="211" mass="23517" checksum="95226D3552AFE2CF" modified="2008-01-15" version="1">MNARPALPCAHEDACAGTPLFARLDARVALQALREEVDALLSSPWCDHVNHGGYEGVWRVMPLRCQRQHVAAHPILQSFSIEEPEEDWKDLPLLQHCPAIRQVLEQLQCPLRSVRLMQLKAGSSIKPHRDHGLGLAHGQARLHVPVHTHPDVQFIVEGRTIPMAAGELWYFNADATHEVVNRGTRDRTHLVIDCLANAWLADSIGKGHAHA</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="65" xmlns="http://uniprot.org/uniprot">
    <accession>A9BW15</accession>
    <name>A9BW15_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Integrase family protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ordered locus">Daci_3193</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="6" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX35831.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_3193"/>
    <dbReference type="PRIDE" id="A9BW15"/>
    <dbReference type="EnsemblBacteria" id="ABX35831">
        <property type="protein sequence ID" value="ABX35831"/>
        <property type="gene ID" value="Daci_3193"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_3193"/>
    <dbReference type="eggNOG" id="COG0582">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_027562_32_1_4"/>
    <dbReference type="OMA" id="PDFRFHD"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015074">
        <property type="term" value="P:DNA integration"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006310">
        <property type="term" value="P:DNA recombination"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.150.130">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.443.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011010">
        <property type="entry name" value="DNA_brk_join_enz"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013762">
        <property type="entry name" value="Integrase-like_cat_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002104">
        <property type="entry name" value="Integrase_catalytic"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010998">
        <property type="entry name" value="Integrase_recombinase_N"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00589">
        <property type="entry name" value="Phage_integrase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56349">
        <property type="entry name" value="SSF56349"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51898">
        <property type="entry name" value="TYR_RECOMBINASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0233">DNA recombination</keyword>
    <keyword evidence="1" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Tyr recombinase" evidence="4">
        <location>
            <begin position="164"/>
            <end position="337"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="3">
        <location>
            <begin position="336"/>
            <end position="365"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="3">
        <location>
            <begin position="351"/>
            <end position="365"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023172"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="PROSITE" id="PS51898"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="ABX35831.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="365" mass="41091" checksum="4025CF3DE89AD803" modified="2008-01-15" version="1">MAKPKKTAAGTFRIQIDVKGRRDAATFPTARECNEWAAHRRVELLAAAAGGKAGARILGESKTLNDAVLRYKEEVSPSKRGWRWELLRIDAFLRQPKWPGDRPMSELDEQDLIGWKNERRKAVKDGTVIREMGLLSSILEEARREWHWIERNPMADVKRPSAPMNRERVISDFEVRCMLRAMGWSSDGPLTQKKHVVARCFIHALLTGMRAGEIANLRWEDVRPSHCILRQGKTKTGQGRIVPLSKSAGRNIESMRGYDSEFVFGIGEGTLDVIFRRCRERAGLSGFTFHDSRHTAATRIAQKLHLLDLCKMFGWSDPKRAMTYYNPTAEQIADRLDAPTPGVGAGSPNPSPLRAATSHPSQAWA</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="72" xmlns="http://uniprot.org/uniprot">
    <accession>A9BWD6</accession>
    <name>A9BWD6_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">DUF853 domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Daci_3520</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="4" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX36156.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012205356.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_3520"/>
    <dbReference type="PRIDE" id="A9BWD6"/>
    <dbReference type="EnsemblBacteria" id="ABX36156">
        <property type="protein sequence ID" value="ABX36156"/>
        <property type="gene ID" value="Daci_3520"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_3520"/>
    <dbReference type="eggNOG" id="COG0433">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_028164_1_1_4"/>
    <dbReference type="OMA" id="TTEYGNI"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR033186">
        <property type="entry name" value="HerA_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="Pfam" id="PF05872">
        <property type="entry name" value="DUF853"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="DUF853" evidence="2">
        <location>
            <begin position="6"/>
            <end position="508"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="427"/>
            <end position="449"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF05872"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ABX36156.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="508" mass="53941" checksum="CEC971BE54D57FCC" modified="2008-01-15" version="1">MAAPLLIARHSATECLLLPALANRHGLITGATGTGKTVTLQKMAEGFSEIGVPVFMADIKGDLSGISQPGSTGAKMAASLQERGIEIPQPLACPTTLWDVFGELGHPVRATVSDMGPLLIGRMLALNDTQMGVLNLVFKIADDNGLLLLDLKDLRAMLQHVGDNAKQFTTEYGNISAASVGAIQRGLVAIESQGGDKFFGEPMLDINDLMQTDAGGKGVVNILAAEKLMNSPRLYSTFLLWMLSELFERLPEIGDPDKPKLVFFFDEAHLLFNDAPKVLLERIELVVRLVRSKGVGVYFVTQNPMDVPDTVLAQLGNRVQHALRAFTPRDQKAVKATATTMRPKPGLDIEAAITELAVGEALVSFLDDKGRPGITERAYVIPPGSQIGPINEEQRKTLLAQSLVAGVYEKAVDRESAYEVLRGRTAATGDGAAPAGTGPAGATPAASEGGAMMDGLKDLLFGTTGPRGGKHDGLVQTMAKSTMRTMGNSLGKEILRGVLGGILGNKKR</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-05-25" version="67" xmlns="http://uniprot.org/uniprot">
    <accession>A9BWJ9</accession>
    <name>A9BWJ9_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Pyridoxal-5'-phosphate-dependent protein beta subunit</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ordered locus">Daci_3585</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="5" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>pyridoxal 5'-phosphate</name>
            <dbReference type="ChEBI" id="CHEBI:597326"/>
        </cofactor>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX36219.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012205419.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_3585"/>
    <dbReference type="EnsemblBacteria" id="ABX36219">
        <property type="protein sequence ID" value="ABX36219"/>
        <property type="gene ID" value="Daci_3585"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_3585"/>
    <dbReference type="eggNOG" id="COG1171">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_021152_3_0_4"/>
    <dbReference type="OMA" id="DALQPCG"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.1100">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001926">
        <property type="entry name" value="PLP-dep"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036052">
        <property type="entry name" value="Trypto_synt_PLP_dependent"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00291">
        <property type="entry name" value="PALP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53686">
        <property type="entry name" value="SSF53686"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0663">Pyridoxal phosphate</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="PALP" evidence="3">
        <location>
            <begin position="5"/>
            <end position="289"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001933"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022898"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF00291"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="ABX36219.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="310" mass="32397" checksum="3C9509FF3F8917CB" modified="2008-01-15" version="1">MPLHTFTPLIPSHALSHAGGPEIWLKLDALQPCGSFKLRGIGHACETLARQGKKRFVASSGGNAGIAVAYAGRQLSMPVTVVVPQTTTEHARALIRAQGAELIVHGAVWDEANALAQSLLGAEDAFVHPFDDPLLWTGHSTLVDELAAADFKPDAVVLAVGGGGLLAGVVQGLERHGWTDVPVIAAETAGADSLAQSLAQGRRVLLDRITSVATSLGARQVCQRAFDLAQVHPVRSAVVTDAQALDACLRFIDDHRLHVEPACGAALALAYAGAPALQGFKRVLVVACGGTTNTLEQLRTWHAAALRAQA</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="59" xmlns="http://uniprot.org/uniprot">
    <accession>A9BWS2</accession>
    <name>A9BWS2_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="4">NLP/P60 protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ordered locus">Daci_3968</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="5" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the peptidase C40 family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX36599.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012205793.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="SMR" id="A9BWS2"/>
    <dbReference type="STRING" id="398578.Daci_3968"/>
    <dbReference type="MEROPS" id="C40.006"/>
    <dbReference type="PRIDE" id="A9BWS2"/>
    <dbReference type="EnsemblBacteria" id="ABX36599">
        <property type="protein sequence ID" value="ABX36599"/>
        <property type="gene ID" value="Daci_3968"/>
    </dbReference>
    <dbReference type="GeneID" id="60688291"/>
    <dbReference type="KEGG" id="dac:Daci_3968"/>
    <dbReference type="eggNOG" id="COG0791">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_016043_7_1_4"/>
    <dbReference type="OMA" id="QVRIESM"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000064">
        <property type="entry name" value="NLP_P60_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038765">
        <property type="entry name" value="Papain-like_cys_pep_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00877">
        <property type="entry name" value="NLPC_P60"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54001">
        <property type="entry name" value="SSF54001"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51935">
        <property type="entry name" value="NLPC_P60"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="2">
        <location>
            <begin position="1"/>
            <end position="17"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5002732623" evidence="2">
        <location>
            <begin position="18"/>
            <end position="211"/>
        </location>
    </feature>
    <feature type="domain" description="NlpC/P60" evidence="3">
        <location>
            <begin position="63"/>
            <end position="187"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00007074"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="PROSITE" id="PS51935"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="ABX36599.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="211" mass="23462" checksum="154AF1B28E70852E" modified="2008-01-15" version="1">MSRWLIALLFVSVTAHAAPPEMRDDDMNQLLVNRSLISQLREARHHMAERTSDFVKEARQSVAEKTSDLVVTAMGFIGVPYRRGGNSAETGFDCSGFVRAIYSETLGKVLPRRADQQAQATEKIDKNELKPGDLVFFNTMRRTFSHVGIYVGDGNFIHAPRTGAQVRVESMQSAYWARRFDGARRVQDADGLGLDASKAALALQMQASQLQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="53" xmlns="http://uniprot.org/uniprot">
    <accession>A9BWS4</accession>
    <name>A9BWS4_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_3970</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX36601.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012205795.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_3970"/>
    <dbReference type="PRIDE" id="A9BWS4"/>
    <dbReference type="EnsemblBacteria" id="ABX36601">
        <property type="protein sequence ID" value="ABX36601"/>
        <property type="gene ID" value="Daci_3970"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_3970"/>
    <dbReference type="eggNOG" id="COG3597">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_116223_1_0_4"/>
    <dbReference type="OMA" id="INEKGAM"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="172"/>
            <end position="228"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="172"/>
            <end position="219"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX36601.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="228" mass="25193" checksum="8A22AD3FFC39A69B" modified="2008-01-15" version="1">MIFRTSDKTPPPPPPRHDVAQAAESARKLLHRRALVGAAASSLPIPGLDWLVDAALLARLLPRINREFGLTPEQLDKLEPGKREQVQKAVAMVGSVLIGKLITRDMVVRLARAAGMRMTATQAAKYVPLAGQAAAAALGYATLRYLGERHIQDCIRVVEHAELDIPSRLDRTARKVEQTGQQLEKAKKTDKADRTDKDGREAEPAPEPSGKRPRFWRQPDRGPWGRSQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="91" xmlns="http://uniprot.org/uniprot">
    <accession>A9BWT2</accession>
    <name>A9BWT2_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="10">Dihydrolipoyl dehydrogenase</fullName>
            <ecNumber evidence="10">1.8.1.4</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="12" type="ordered locus">Daci_3978</name>
    </gene>
    <organism evidence="12 13">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="12 13" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="13">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="13" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="13">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="10">
            <text>(R)-N(6)-dihydrolipoyl-L-lysyl-[protein] + NAD(+) = (R)-N(6)-lipoyl-L-lysyl-[protein] + H(+) + NADH</text>
            <dbReference type="Rhea" id="RHEA:15045"/>
            <dbReference type="Rhea" id="RHEA-COMP:10474"/>
            <dbReference type="Rhea" id="RHEA-COMP:10475"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:57540"/>
            <dbReference type="ChEBI" id="CHEBI:57945"/>
            <dbReference type="ChEBI" id="CHEBI:83099"/>
            <dbReference type="ChEBI" id="CHEBI:83100"/>
            <dbReference type="EC" id="1.8.1.4"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>(R)-lipoate</name>
            <dbReference type="ChEBI" id="CHEBI:83088"/>
        </cofactor>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="10">
            <name>FAD</name>
            <dbReference type="ChEBI" id="CHEBI:57692"/>
        </cofactor>
        <text evidence="10">Binds 1 FAD per subunit.</text>
    </comment>
    <comment type="miscellaneous">
        <text evidence="10">The active site is a redox-active disulfide bond.</text>
    </comment>
    <comment type="similarity">
        <text evidence="2 10">Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family.</text>
    </comment>
    <dbReference type="EC" id="1.8.1.4" evidence="10"/>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX36609.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012205803.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_3978"/>
    <dbReference type="PRIDE" id="A9BWT2"/>
    <dbReference type="EnsemblBacteria" id="ABX36609">
        <property type="protein sequence ID" value="ABX36609"/>
        <property type="gene ID" value="Daci_3978"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_3978"/>
    <dbReference type="eggNOG" id="COG1249">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_016755_0_1_4"/>
    <dbReference type="OMA" id="PVDIQMR"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004148">
        <property type="term" value="F:dihydrolipoyl dehydrogenase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0050660">
        <property type="term" value="F:flavin adenine dinucleotide binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0045454">
        <property type="term" value="P:cell redox homeostasis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.390.30">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.50.50.60">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003016">
        <property type="entry name" value="2-oxoA_DH_lipoyl-BS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000089">
        <property type="entry name" value="Biotin_lipoyl"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036188">
        <property type="entry name" value="FAD/NAD-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023753">
        <property type="entry name" value="FAD/NAD-binding_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016156">
        <property type="entry name" value="FAD/NAD-linked_Rdtase_dimer_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006258">
        <property type="entry name" value="Lipoamide_DH"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004099">
        <property type="entry name" value="Pyr_nucl-diS_OxRdtase_dimer"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012999">
        <property type="entry name" value="Pyr_OxRdtase_I_AS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011053">
        <property type="entry name" value="Single_hybrid_motif"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00364">
        <property type="entry name" value="Biotin_lipoyl"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07992">
        <property type="entry name" value="Pyr_redox_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02852">
        <property type="entry name" value="Pyr_redox_dim"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51230">
        <property type="entry name" value="SSF51230"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51905">
        <property type="entry name" value="SSF51905"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55424">
        <property type="entry name" value="SSF55424"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01350">
        <property type="entry name" value="lipoamide_DH"/>
        <property type="match status" value="1"/>
    </dbReference>
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        <property type="entry name" value="BIOTINYL_LIPOYL"/>
        <property type="match status" value="1"/>
    </dbReference>
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        <property type="entry name" value="LIPOYL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00076">
        <property type="entry name" value="PYRIDINE_REDOX_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
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    <keyword evidence="5 10" id="KW-0274">FAD</keyword>
    <keyword evidence="3 10" id="KW-0285">Flavoprotein</keyword>
    <keyword evidence="4" id="KW-0450">Lipoyl</keyword>
    <keyword evidence="7 10" id="KW-0520">NAD</keyword>
    <keyword evidence="6 10" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="9 10" id="KW-0676">Redox-active center</keyword>
    <keyword evidence="13" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Lipoyl-binding" evidence="11">
        <location>
            <begin position="3"/>
            <end position="77"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001938"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00007532"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022630"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022823"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022827"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023002"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023027"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00023157"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00023284"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="RuleBase" id="RU003692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="11">
        <source>
            <dbReference type="PROSITE" id="PS50968"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="EMBL" id="ABX36609.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="13">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="614" mass="63339" checksum="5D7BEEE6CD9C479C" modified="2008-01-15" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="85" xmlns="http://uniprot.org/uniprot">
    <accession>A9BWW8</accession>
    <name>A9BWW8_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">Histidine kinase</fullName>
            <ecNumber evidence="2">2.7.13.3</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="7" type="ordered locus">Daci_4322</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="8" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>ATP + protein L-histidine = ADP + protein N-phospho-L-histidine.</text>
            <dbReference type="EC" id="2.7.13.3"/>
        </reaction>
    </comment>
    <dbReference type="EC" id="2.7.13.3" evidence="2"/>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX36953.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_4322"/>
    <dbReference type="PRIDE" id="A9BWW8"/>
    <dbReference type="EnsemblBacteria" id="ABX36953">
        <property type="protein sequence ID" value="ABX36953"/>
        <property type="gene ID" value="Daci_4322"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_4322"/>
    <dbReference type="eggNOG" id="COG2205">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_496708_0_0_4"/>
    <dbReference type="OMA" id="QACTADI"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000155">
        <property type="term" value="F:phosphorelay sensor kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd00082">
        <property type="entry name" value="HisKA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.565.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011623">
        <property type="entry name" value="7TMR_DISM_rcpt_extracell_dom1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003594">
        <property type="entry name" value="HATPase_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036890">
        <property type="entry name" value="HATPase_C_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005467">
        <property type="entry name" value="His_kinase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003661">
        <property type="entry name" value="HisK_dim/P"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036097">
        <property type="entry name" value="HisK_dim/P_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004358">
        <property type="entry name" value="Sig_transdc_His_kin-like_C"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07695">
        <property type="entry name" value="7TMR-DISM_7TM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02518">
        <property type="entry name" value="HATPase_c"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00512">
        <property type="entry name" value="HisKA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00344">
        <property type="entry name" value="BCTRLSENSOR"/>
    </dbReference>
    <dbReference type="SMART" id="SM00387">
        <property type="entry name" value="HATPase_c"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00388">
        <property type="entry name" value="HisKA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47384">
        <property type="entry name" value="SSF47384"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55874">
        <property type="entry name" value="SSF55874"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50109">
        <property type="entry name" value="HIS_KIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="7" id="KW-0418">Kinase</keyword>
    <keyword evidence="5" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-0597">Phosphoprotein</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="7" id="KW-0808">Transferase</keyword>
    <keyword evidence="5" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="5" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="92"/>
            <end position="111"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="131"/>
            <end position="151"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="158"/>
            <end position="175"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="195"/>
            <end position="213"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="225"/>
            <end position="245"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="251"/>
            <end position="272"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="279"/>
            <end position="298"/>
        </location>
    </feature>
    <feature type="domain" description="Histidine kinase" evidence="6">
        <location>
            <begin position="398"/>
            <end position="611"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="4">
        <location>
            <begin position="1"/>
            <end position="21"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="4">
        <location>
            <begin position="615"/>
            <end position="636"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00000085"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00012438"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022553"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="PROSITE" id="PS50109"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="ABX36953.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="636" mass="69576" checksum="1577346341DCBD71" modified="2008-01-15" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2021-09-29" version="41" xmlns="http://uniprot.org/uniprot">
    <accession>A9BX18</accession>
    <name>A9BX18_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Daci_4372</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="2" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX37003.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="ABX37003">
        <property type="protein sequence ID" value="ABX37003"/>
        <property type="gene ID" value="Daci_4372"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_4372"/>
    <dbReference type="eggNOG" id="ENOG502ZHX3">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_1990848_0_0_4"/>
    <dbReference type="OMA" id="TRRWHFP"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ABX37003.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="116" mass="12342" checksum="5186DAC1020050EE" modified="2008-01-15" version="1">MLRPSSPHLRWLACLLALLLLFVEQGALHHTLSHLPQTGVAWSGAGQGTEPSPAPDHTACPECAAFAALDLDMALPVALLWALDLALRWHFPSLKPCARAPVSAVALCARDPPSKP</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="60" xmlns="http://uniprot.org/uniprot">
    <accession>A9BXE1</accession>
    <name>A9BXE1_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="8">ResB family protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="8" type="ordered locus">Daci_5588</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
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                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
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            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="9" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX38217.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012207386.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_5588"/>
    <dbReference type="PRIDE" id="A9BXE1"/>
    <dbReference type="EnsemblBacteria" id="ABX38217">
        <property type="protein sequence ID" value="ABX38217"/>
        <property type="gene ID" value="Daci_5588"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_5588"/>
    <dbReference type="eggNOG" id="COG1333">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_025116_0_0_4"/>
    <dbReference type="OMA" id="MLYVRER"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0017004">
        <property type="term" value="P:cytochrome complex assembly"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023494">
        <property type="entry name" value="Cyt_c_bgen_Ccs1/CcsB/ResB"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007816">
        <property type="entry name" value="ResB-like_domain"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR31566">
        <property type="entry name" value="PTHR31566"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF05140">
        <property type="entry name" value="ResB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-0201">Cytochrome c-type biogenesis</keyword>
    <keyword evidence="5 6" id="KW-0472">Membrane</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 6" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="4 6" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="30"/>
            <end position="48"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="80"/>
            <end position="99"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="181"/>
            <end position="199"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="652"/>
            <end position="670"/>
        </location>
    </feature>
    <feature type="domain" description="ResB" evidence="7">
        <location>
            <begin position="28"/>
            <end position="705"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022748"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="Pfam" id="PF05140"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="ABX38217.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="727" mass="79035" checksum="B218F3C37F37386D" modified="2008-01-15" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="84" xmlns="http://uniprot.org/uniprot">
    <accession>A9BXF2</accession>
    <name>A9BXF2_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="4">Glucose-6-phosphate 1-dehydrogenase</fullName>
            <shortName evidence="4">G6PD</shortName>
            <ecNumber evidence="4">1.1.1.49</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="4" type="primary">zwf</name>
        <name evidence="7" type="ordered locus">Daci_5599</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="8" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="4">Catalyzes the oxidation of glucose 6-phosphate to 6-phosphogluconolactone.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="4">
            <text>D-glucose 6-phosphate + NADP(+) = 6-phospho-D-glucono-1,5-lactone + H(+) + NADPH</text>
            <dbReference type="Rhea" id="RHEA:15841"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:57783"/>
            <dbReference type="ChEBI" id="CHEBI:57955"/>
            <dbReference type="ChEBI" id="CHEBI:58349"/>
            <dbReference type="ChEBI" id="CHEBI:61548"/>
            <dbReference type="EC" id="1.1.1.49"/>
        </reaction>
    </comment>
    <comment type="pathway">
        <text evidence="4">Carbohydrate degradation; pentose phosphate pathway; D-ribulose 5-phosphate from D-glucose 6-phosphate (oxidative stage): step 1/3.</text>
    </comment>
    <comment type="similarity">
        <text evidence="4">Belongs to the glucose-6-phosphate dehydrogenase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="4">Lacks conserved residue(s) required for the propagation of feature annotation.</text>
    </comment>
    <dbReference type="EC" id="1.1.1.49" evidence="4"/>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX38228.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012207397.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_5599"/>
    <dbReference type="PRIDE" id="A9BXF2"/>
    <dbReference type="EnsemblBacteria" id="ABX38228">
        <property type="protein sequence ID" value="ABX38228"/>
        <property type="gene ID" value="Daci_5599"/>
    </dbReference>
    <dbReference type="GeneID" id="60689951"/>
    <dbReference type="KEGG" id="dac:Daci_5599"/>
    <dbReference type="eggNOG" id="COG0364">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_013524_5_0_4"/>
    <dbReference type="OMA" id="PDEGIQM"/>
    <dbReference type="UniPathway" id="UPA00115">
        <property type="reaction ID" value="UER00408"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004345">
        <property type="term" value="F:glucose-6-phosphate dehydrogenase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0050661">
        <property type="term" value="F:NADP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006006">
        <property type="term" value="P:glucose metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006098">
        <property type="term" value="P:pentose-phosphate shunt"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00966">
        <property type="entry name" value="G6PD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001282">
        <property type="entry name" value="G6P_DH"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR022675">
        <property type="entry name" value="G6P_DH_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR022674">
        <property type="entry name" value="G6P_DH_NAD-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036291">
        <property type="entry name" value="NAD(P)-bd_dom_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR23429">
        <property type="entry name" value="PTHR23429"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02781">
        <property type="entry name" value="G6PD_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00479">
        <property type="entry name" value="G6PD_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF000110">
        <property type="entry name" value="G6PD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00079">
        <property type="entry name" value="G6PDHDRGNASE"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51735">
        <property type="entry name" value="SSF51735"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00871">
        <property type="entry name" value="zwf"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3 4" id="KW-0119">Carbohydrate metabolism</keyword>
    <keyword evidence="1 4" id="KW-0313">Glucose metabolism</keyword>
    <keyword evidence="2 4" id="KW-0521">NADP</keyword>
    <keyword evidence="4 7" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="G6PD_N" evidence="5">
        <location>
            <begin position="6"/>
            <end position="181"/>
        </location>
    </feature>
    <feature type="domain" description="G6PD_C" evidence="6">
        <location>
            <begin position="183"/>
            <end position="480"/>
        </location>
    </feature>
    <feature type="active site" description="Proton acceptor" evidence="4">
        <location>
            <position position="234"/>
        </location>
    </feature>
    <feature type="binding site" evidence="4">
        <location>
            <position position="43"/>
        </location>
        <ligand>
            <name>NADP(+)</name>
            <dbReference type="ChEBI" id="CHEBI:58349"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="4">
        <location>
            <begin position="86"/>
            <end position="87"/>
        </location>
        <ligand>
            <name>NADP(+)</name>
            <dbReference type="ChEBI" id="CHEBI:58349"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="4">
        <location>
            <position position="142"/>
        </location>
        <ligand>
            <name>NADP(+)</name>
            <dbReference type="ChEBI" id="CHEBI:58349"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="4">
        <location>
            <position position="172"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="4">
        <location>
            <position position="176"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="4">
        <location>
            <position position="210"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="4">
        <location>
            <position position="229"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="4">
        <location>
            <position position="334"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022526"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022857"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023277"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00966"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="Pfam" id="PF00479"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="Pfam" id="PF02781"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="ABX38228.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="484" mass="54031" checksum="5E33348333203153" modified="2008-01-15" version="1">MGFDLVLFGGTGDLAWRKLMPALFQAFRHGTLPEGGRILCVGRDDLSDDQYRALIQGRFEKVELSKRPSPEEFSRFAALLHYLRMDLSQPADYERLATALNTRGAETVVMYLATAPSLFTTVCEQIAAVGLNGPQTRVVLEKPLGHDLASNQAINATLRKVLREEQVFRIDHYLGKPSVQNLLALRFGNALFEPLWRRETIANIQITIAEELGVESRGAFYDQTGALRDMVQNHALQLLCAIGMEPPINASAHAIRDEKLKVLQSLKPWTPETLSQHVVRGQYLAGASQGQPVPAYQQEKGVAAGSQTETFVALRTEICNWRWAGVPFYIRTGKRLAGRDARIVVNFRPVPHPIFRSPLSEANRLVINLQPKDGLELHLLAQGATQQQAEPSLAPVHLNLDFDQRFGAKRVGAYERLLLDVIAGRLNLFVRSDEQEQAWRWVEPILQHWRNDLSGPRGYAAGSWGPSAASAMIARDGFCWSEEV</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="44" xmlns="http://uniprot.org/uniprot">
    <accession>A9BXQ8</accession>
    <name>A9BXQ8_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_5706</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX38334.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012207503.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_5706"/>
    <dbReference type="PRIDE" id="A9BXQ8"/>
    <dbReference type="EnsemblBacteria" id="ABX38334">
        <property type="protein sequence ID" value="ABX38334"/>
        <property type="gene ID" value="Daci_5706"/>
    </dbReference>
    <dbReference type="GeneID" id="60690068"/>
    <dbReference type="KEGG" id="dac:Daci_5706"/>
    <dbReference type="eggNOG" id="ENOG5032C6K">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_150452_0_0_4"/>
    <dbReference type="OMA" id="WRPQGAD"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="28"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="112"/>
            <end position="144"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="114"/>
            <end position="135"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX38334.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="144" mass="16091" checksum="BCBE0159D3ADBBC6" modified="2008-01-15" version="1">MPIPPVDRSPIPWRPQSADLYSTGASGAVPVRPVNATNAVESTDRIGEGRVVRDPEKPSVVDQENRDWTLAEEIKQKEEVEEPPKEPISKQLIEFIQSMWRASAMAVEQAQEVSKADDVARNKMQVRDEPLTYSEPKVKRTGGL</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="31" xmlns="http://uniprot.org/uniprot">
    <accession>A9BYM1</accession>
    <name>A9BYM1_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Daci_1924</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="2" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
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                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
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        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
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        </source>
    </reference>
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        <property type="gene ID" value="Daci_1924"/>
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    <dbReference type="eggNOG" id="ENOG502ZWR7">
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    </evidence>
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    </evidence>
    <sequence length="103" mass="11506" checksum="BC3054E31C049407" modified="2008-01-15" version="1">MNLAEYMEAHREEVFPGVLGPFPRINCKDGFSISIQAGRGLYCTPRDNQGPWREMEAGFPSDRPSDALMEFAEESEKPTRTVYGYVPVEVLQAELDLHGGIDA</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="72" xmlns="http://uniprot.org/uniprot">
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                <person name="Fischer K."/>
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                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
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        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
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            <strain evidence="5">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
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    </feature>
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            <begin position="1"/>
            <end position="21"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
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        </source>
    </evidence>
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        <source>
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    </evidence>
    <evidence type="ECO:0000259" key="3">
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            <dbReference type="PROSITE" id="PS51711"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
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        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
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        </source>
    </evidence>
    <sequence length="647" mass="69418" checksum="FD3133C3B6D5D807" modified="2008-01-15" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="65" xmlns="http://uniprot.org/uniprot">
    <accession>A9BYU6</accession>
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        </submittedName>
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        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
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            <strain evidence="8">DSM 14801 / SPH-1</strain>
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        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
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                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
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        <property type="molecule type" value="Genomic_DNA"/>
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        <property type="nucleotide sequence ID" value="NC_010002.1"/>
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    <dbReference type="EnsemblBacteria" id="ABX34841">
        <property type="protein sequence ID" value="ABX34841"/>
        <property type="gene ID" value="Daci_2201"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_2201"/>
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        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
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    </dbReference>
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        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0022857">
        <property type="term" value="F:transmembrane transporter activity"/>
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        <property type="project" value="InterPro"/>
    </dbReference>
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        <property type="match status" value="1"/>
    </dbReference>
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        <property type="entry name" value="MFS"/>
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    </dbReference>
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    </dbReference>
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    </dbReference>
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    </feature>
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        </location>
    </feature>
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        <source>
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        <source>
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    </evidence>
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        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
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        </source>
    </evidence>
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        </source>
    </evidence>
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        <source>
            <dbReference type="EMBL" id="ABX34841.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="407" mass="42519" checksum="BBCA96B09EED5FE8" modified="2008-01-15" version="1">MPPSVSAAAGSVSASSTPTAAQAWLSVIALALGAFVFNTTEFVPVGLLSSIGASFGMPTEQVGLMLTIYAWIVALASLPFMLLTRNVERRKLLMGVFALFVASHVLSGVAWSFASLMVSRIGIALSHAVFWSITASLAVRVAPPGRKAVALSLLATGTSMAMVLGIPLGRIVGEWLGWRTTFLAVGGVAAIVMVALARLLPRLPSENAGNLASVPMLLRRPALLSIYILLVVVITGQFTAYSYIEPFVQDIAGFEGKVTTAVLLLYGGMGIVGSVMFSWWGLRHPRGFLLAAIGVLSASLLMLVPASGHEASLYVMSSVWGVAMICFALAMQSQVLKLAADATDVGMSMFSGIFNIGIGGGALLGSQVSMHAGMQNIGWIGGGLVALGLAWCIWAFVRWSAGFQAAH</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="59" xmlns="http://uniprot.org/uniprot">
    <accession>A9BYX1</accession>
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            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
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        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
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                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
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            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="4" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX34866.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012204149.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_2226"/>
    <dbReference type="PRIDE" id="A9BYX1"/>
    <dbReference type="EnsemblBacteria" id="ABX34866">
        <property type="protein sequence ID" value="ABX34866"/>
        <property type="gene ID" value="Daci_2226"/>
    </dbReference>
    <dbReference type="GeneID" id="60686620"/>
    <dbReference type="KEGG" id="dac:Daci_2226"/>
    <dbReference type="eggNOG" id="COG2353">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_071003_1_2_4"/>
    <dbReference type="OMA" id="GNYRAGF"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.128.110">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007372">
        <property type="entry name" value="Lipid/polyisoprenoid-bd_YceI"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036761">
        <property type="entry name" value="TTHA0802/YceI-like_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04264">
        <property type="entry name" value="YceI"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00867">
        <property type="entry name" value="YceI"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF101874">
        <property type="entry name" value="SSF101874"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="1">
        <location>
            <begin position="1"/>
            <end position="20"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5002733174" evidence="1">
        <location>
            <begin position="21"/>
            <end position="192"/>
        </location>
    </feature>
    <feature type="domain" description="YceI" evidence="2">
        <location>
            <begin position="24"/>
            <end position="189"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="SMART" id="SM00867"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ABX34866.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="192" mass="21057" checksum="F1DD42CA607D90A3" modified="2008-01-15" version="1">MRTSVFALAIAGLFATAVQAAPATYAIDPTHTFATFEIDHNGASTNRVRFDKKSGTVEFDRDAKAGKVEVVLEMESLSSGTAAFDKHLKSADIFNVAKFPQAKFVSDKFVFDGDKLKEVTGHLTILDKTQPVTIKANKFTCYPNAMLQKRETCGGDFEAVIDRTAFGVNYGVDYGFPKQVRLVMSIEAVKQQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="51" xmlns="http://uniprot.org/uniprot">
    <accession>A9BZA2</accession>
    <name>A9BZA2_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Integral membrane protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_2564</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX35202.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012204481.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_2564"/>
    <dbReference type="PRIDE" id="A9BZA2"/>
    <dbReference type="EnsemblBacteria" id="ABX35202">
        <property type="protein sequence ID" value="ABX35202"/>
        <property type="gene ID" value="Daci_2564"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_2564"/>
    <dbReference type="eggNOG" id="COG5473">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_067791_0_0_4"/>
    <dbReference type="OMA" id="TWHAYKA"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018692">
        <property type="entry name" value="DUF2189"/>
    </dbReference>
    <dbReference type="Pfam" id="PF09955">
        <property type="entry name" value="DUF2189"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="42"/>
            <end position="61"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="67"/>
            <end position="90"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="124"/>
            <end position="146"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="178"/>
            <end position="204"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="216"/>
            <end position="240"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="246"/>
            <end position="265"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX35202.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="277" mass="29954" checksum="4069FE8E48D0FE1B" modified="2008-01-15" version="1">MPTSHSTAFFHPPVLPAVRSIGWKHPLSWLARGARDMARAPWLSLAHGLVLTLIGFLILTLGHNRFWLMAGALSGFLIVGPVVATSLYAISRALERGEAADLSLVRRTWTRWQNGHASKAEGQVGYWCLVQFGLLLSLAATGWVLVSASLITVLSPVRIATPADFVQHVVLARDGQLFAIWLALGSFLAAPIFASSVVAMPLMLDRRVTVRQAVLTSWLAVLANPVPLALWAALIVLLTLLGLGSWLLGLVAVMPLLGHASWHAYRDLVDSSAFPAR</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="53" xmlns="http://uniprot.org/uniprot">
    <accession>A9BZE4</accession>
    <name>A9BZE4_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Peptidase S58 DmpA</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_2906</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the peptidase S58 family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX35544.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012204754.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_2906"/>
    <dbReference type="PRIDE" id="A9BZE4"/>
    <dbReference type="EnsemblBacteria" id="ABX35544">
        <property type="protein sequence ID" value="ABX35544"/>
        <property type="gene ID" value="Daci_2906"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_2906"/>
    <dbReference type="eggNOG" id="COG3191">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_044458_1_0_4"/>
    <dbReference type="OMA" id="PHFWAAP"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016117">
        <property type="entry name" value="ArgJ-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005321">
        <property type="entry name" value="Peptidase_S58_DmpA"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR36512">
        <property type="entry name" value="PTHR36512"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03576">
        <property type="entry name" value="Peptidase_S58"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56266">
        <property type="entry name" value="SSF56266"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00007068"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX35544.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="336" mass="33813" checksum="DD9651C77408490D" modified="2008-01-15" version="1">MPSTDSDPGSITRVQGIEVGHHTDARRPTGCTVVLARGGAVGGCDVRGAAPGTRETDLLHPSNLVQQVHAVMLSGGSAWGLDAASGAMRWLEEQGIGLDVGVGRVPIVPAAVLFDLAVGDSRIRPGADAGHAACQAASAARPAEGNVGAGMGACVGKVFGMDRAMKGGIGTASLTVHGVTVGALIACNAVGDVVDPHSGALLAGARSPDGRQLHDTCRALLRGEEPRPLLAGTNTTIGVIATDARITKVQAQRLAVVSHDGLARAIRPVHTMSDGDTLFALGTGLAEHSLGMLTLSAMAAEAVALATVRAVLAAQSLTTAEGLELPCARELAACRP</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="57" xmlns="http://uniprot.org/uniprot">
    <accession>A9BZG4</accession>
    <name>A9BZG4_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Xylose isomerase domain protein TIM barrel</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_2926</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX35564.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012204774.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_2926"/>
    <dbReference type="PRIDE" id="A9BZG4"/>
    <dbReference type="EnsemblBacteria" id="ABX35564">
        <property type="protein sequence ID" value="ABX35564"/>
        <property type="gene ID" value="Daci_2926"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_2926"/>
    <dbReference type="eggNOG" id="COG4130">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_067093_0_0_4"/>
    <dbReference type="OMA" id="QRFNEWN"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016853">
        <property type="term" value="F:isomerase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014621">
        <property type="entry name" value="UCP036778_sugar_epimerase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036237">
        <property type="entry name" value="Xyl_isomerase-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013022">
        <property type="entry name" value="Xyl_isomerase-like_TIM-brl"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01261">
        <property type="entry name" value="AP_endonuc_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF036778">
        <property type="entry name" value="UCP036778"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51658">
        <property type="entry name" value="SSF51658"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0413">Isomerase</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="AP_endonuc_2" evidence="1">
        <location>
            <begin position="24"/>
            <end position="269"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF01261"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX35564.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="273" mass="29886" checksum="14495558327B27A9" modified="2008-01-15" version="1">MHQPIHFAINRISASRMPFADCLAMCRRLGVSAIEIRNDLPHAEIRDGTAPAAIRAAAQQAGITILSINALYPLDVFDAGLERKARELAVYARDCGAQALVMCPLNDRADARTPGERRRDLVQALRQLHPILDGHGIQGLVEPLGFAECALRRKSDAVAAIHEAAGERHFKLVHDSFHHHLAGEDLFFPEQTGLVHVSGVEDRQLESGQMRDGHRVLVGEGDRLGNIAQLRALLDRGCGAPVSFEPFAQGITQAADSEALLRQSMDFIRHSLL</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="86" xmlns="http://uniprot.org/uniprot">
    <accession>A9BZM7</accession>
    <name>A9BZM7_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="13">TonB-dependent siderophore receptor</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="13" type="ordered locus">Daci_3297</name>
    </gene>
    <organism evidence="13 14">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="13 14" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="14">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="14" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="14">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="9">Cell outer membrane</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="1 9">Belongs to the TonB-dependent receptor family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX35935.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012205135.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_3297"/>
    <dbReference type="PRIDE" id="A9BZM7"/>
    <dbReference type="EnsemblBacteria" id="ABX35935">
        <property type="protein sequence ID" value="ABX35935"/>
        <property type="gene ID" value="Daci_3297"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_3297"/>
    <dbReference type="eggNOG" id="COG4774">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_008287_9_1_4"/>
    <dbReference type="OMA" id="TANYVHT"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009279">
        <property type="term" value="C:cell outer membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015344">
        <property type="term" value="F:siderophore uptake transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0038023">
        <property type="term" value="F:signaling receptor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0055072">
        <property type="term" value="P:iron ion homeostasis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.170.130.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.170.20">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012910">
        <property type="entry name" value="Plug_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037066">
        <property type="entry name" value="Plug_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR039423">
        <property type="entry name" value="TonB-dep_rcpt"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000531">
        <property type="entry name" value="TonB-dep_rcpt_b-brl"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036942">
        <property type="entry name" value="TonB_rcpt_b-brl_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010917">
        <property type="entry name" value="TonB_rcpt_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010105">
        <property type="entry name" value="TonB_sidphr_rcpt"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR32552">
        <property type="entry name" value="PTHR32552"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07715">
        <property type="entry name" value="Plug"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00593">
        <property type="entry name" value="TonB_dep_Rec"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01783">
        <property type="entry name" value="TonB-siderophor"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01156">
        <property type="entry name" value="TONB_DEPENDENT_REC_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="8" id="KW-0998">Cell outer membrane</keyword>
    <keyword evidence="2" id="KW-0406">Ion transport</keyword>
    <keyword evidence="4" id="KW-0408">Iron</keyword>
    <keyword evidence="2" id="KW-0410">Iron transport</keyword>
    <keyword evidence="6 9" id="KW-0472">Membrane</keyword>
    <keyword evidence="7 13" id="KW-0675">Receptor</keyword>
    <keyword evidence="14" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 10" id="KW-0732">Signal</keyword>
    <keyword evidence="5 9" id="KW-0798">TonB box</keyword>
    <keyword evidence="2" id="KW-0813">Transport</keyword>
    <feature type="signal peptide" evidence="10">
        <location>
            <begin position="1"/>
            <end position="33"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5002735231" evidence="10">
        <location>
            <begin position="34"/>
            <end position="733"/>
        </location>
    </feature>
    <feature type="domain" description="Plug" evidence="12">
        <location>
            <begin position="73"/>
            <end position="171"/>
        </location>
    </feature>
    <feature type="domain" description="TonB_dep_Rec" evidence="11">
        <location>
            <begin position="250"/>
            <end position="732"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00009810"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022496"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022729"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023004"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023077"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023170"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00023237"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="RuleBase" id="RU003357"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="11">
        <source>
            <dbReference type="Pfam" id="PF00593"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="12">
        <source>
            <dbReference type="Pfam" id="PF07715"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="13">
        <source>
            <dbReference type="EMBL" id="ABX35935.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="14">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="733" mass="79243" checksum="71C743995FF5C644" modified="2008-01-15" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="82" xmlns="http://uniprot.org/uniprot">
    <accession>A9BZQ9</accession>
    <name>A9BZQ9_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Transcriptional regulator, LysR family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Daci_3329</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="4" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the LysR transcriptional regulatory family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX35967.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012205167.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_3329"/>
    <dbReference type="PRIDE" id="A9BZQ9"/>
    <dbReference type="EnsemblBacteria" id="ABX35967">
        <property type="protein sequence ID" value="ABX35967"/>
        <property type="gene ID" value="Daci_3329"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_3329"/>
    <dbReference type="eggNOG" id="COG0583">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_039613_39_3_4"/>
    <dbReference type="OMA" id="VLQQTDM"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003700">
        <property type="term" value="F:DNA-binding transcription factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005119">
        <property type="entry name" value="LysR_subst-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000847">
        <property type="entry name" value="Tscrpt_reg_HTH_LysR"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036390">
        <property type="entry name" value="WH_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00126">
        <property type="entry name" value="HTH_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03466">
        <property type="entry name" value="LysR_substrate"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46785">
        <property type="entry name" value="SSF46785"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50931">
        <property type="entry name" value="HTH_LYSR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HTH lysR-type" evidence="2">
        <location>
            <begin position="5"/>
            <end position="62"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00009437"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS50931"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ABX35967.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="323" mass="34401" checksum="38AD474E75E1D096" modified="2008-01-15" version="1">MANTYDLNLLIALDALLSTGSVTQAAGRMHLSTPAMSHTLARIREAFGDPILVRAGRSLVPTPRALALAEPVRALLAQARALQDPVDAGGLAGLRRRFVVRAPEGIAVVFGASLSRALEAEMPLASLQFLPETHADPGALREGRIDLDVGSFRSMDPETESLVISEQTLVGVVRAGHPLLKSARKSQRPSAAQFAAARHVGITQRPGESSPVDAALEALGLQRQLALLVPSSFSALIAASRTDLVACVPTRTAHGMAASLGLVVFALPIEVQVQPMRMAWHPRHQADPAHQWLRDCIQRQLDDPQWIRPSVASLTDGAGRGVT</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="79" xmlns="http://uniprot.org/uniprot">
    <accession>A9BZR5</accession>
    <name>A9BZR5_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Transcriptional regulator, LysR family</fullName>
            <ecNumber evidence="3">4.2.1.1</ecNumber>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Daci_3335</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="4" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the LysR transcriptional regulatory family.</text>
    </comment>
    <dbReference type="EC" id="4.2.1.1" evidence="3"/>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX35973.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_3335"/>
    <dbReference type="PRIDE" id="A9BZR5"/>
    <dbReference type="EnsemblBacteria" id="ABX35973">
        <property type="protein sequence ID" value="ABX35973"/>
        <property type="gene ID" value="Daci_3335"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_3335"/>
    <dbReference type="eggNOG" id="COG0583">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_039613_16_2_4"/>
    <dbReference type="OMA" id="HSHNTEL"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004089">
        <property type="term" value="F:carbonate dehydratase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003700">
        <property type="term" value="F:DNA-binding transcription factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005119">
        <property type="entry name" value="LysR_subst-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000847">
        <property type="entry name" value="Tscrpt_reg_HTH_LysR"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036390">
        <property type="entry name" value="WH_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00126">
        <property type="entry name" value="HTH_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03466">
        <property type="entry name" value="LysR_substrate"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46785">
        <property type="entry name" value="SSF46785"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50931">
        <property type="entry name" value="HTH_LYSR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-0456">Lyase</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HTH lysR-type" evidence="2">
        <location>
            <begin position="6"/>
            <end position="63"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00009437"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS50931"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ABX35973.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="312" mass="33272" checksum="6994B71CB675D57C" modified="2008-01-15" version="1">MPDTAMPLDEMLVFARVVEHQSFAGAARQLGLTTSAVSRSVGRLEAHFGLRLLQRTTRSLSLTEAGAEIHQACLRLVADAQAVQALAGQLRQQPRGLLKISAPAVLGDIWLSPLLPGFCARWPEVQVQVDMTDRMVDLVAEGLDLGLRISVPGQIAPGLVARPLKTIRYVLVATPGYLARHAQITEPGQLLAHPFISLGYGQFQNEVELRPLHPAAAPATRLLVNTPITIASSLGIIHALQQGPGIGVVADFAAQAALQAGQLAPVLPGWALCGKYAPRVVHAVYAPTRHVPLKLRALIDYLVEEEGEGASA</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="75" xmlns="http://uniprot.org/uniprot">
    <accession>A9BZR9</accession>
    <name>A9BZR9_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Mandelate racemase/muconate lactonizing protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_3339</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX35977.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012205177.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_3339"/>
    <dbReference type="PRIDE" id="A9BZR9"/>
    <dbReference type="EnsemblBacteria" id="ABX35977">
        <property type="protein sequence ID" value="ABX35977"/>
        <property type="gene ID" value="Daci_3339"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_3339"/>
    <dbReference type="eggNOG" id="COG4948">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_707555_0_0_4"/>
    <dbReference type="OMA" id="FQPYGGF"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0047808">
        <property type="term" value="F:D(-)-tartrate dehydratase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.20.20.120">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.390.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR034611">
        <property type="entry name" value="D-tartrate_dehydratase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036849">
        <property type="entry name" value="Enolase-like_C_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029017">
        <property type="entry name" value="Enolase-like_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029065">
        <property type="entry name" value="Enolase_C-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013342">
        <property type="entry name" value="Mandelate_racemase_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR034593">
        <property type="entry name" value="Mandelate_racemase_DgoD-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013341">
        <property type="entry name" value="Mandelate_racemase_N_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR48080">
        <property type="entry name" value="PTHR48080"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR48080:SF5">
        <property type="entry name" value="PTHR48080:SF5"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13378">
        <property type="entry name" value="MR_MLE_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02746">
        <property type="entry name" value="MR_MLE_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SFLD" id="SFLDF00118">
        <property type="entry name" value="D-tartrate_dehydratase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00922">
        <property type="entry name" value="MR_MLE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51604">
        <property type="entry name" value="SSF51604"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54826">
        <property type="entry name" value="SSF54826"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="MR_MLE" evidence="1">
        <location>
            <begin position="162"/>
            <end position="259"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="SMART" id="SM00922"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX35977.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="388" mass="42542" checksum="142F9BF9C61F01F9" modified="2008-01-15" version="1">MKIVNILESTRPIKSDIRNAYIDFSKMTLSLVAVVTDVIRDGRPVIGYGFNSNGRYGQGALMRERFIPRVLEAEPASLLDDSGDNLDPHRIWARMMINEKPGGHGERSVAVGTIDMAVWDATAKIAGKPLYQLLAERYGSGTPNPRVFVYAAGGYYYPGKGLDGLRREMESYLERGYSVVKMKIGGASLAEDCERIESVLKILGPGQQLAVDANGRFDLATALDYGRALGQYPLFWYEEAGDPLDYELQARLGEVYQGPMATGENLFSMQDARNLIRHGGMRPDRDWLQFDCALSYGLVEYLRTLDMLKAHGWSPSRCIPHGGHQMSLAIAAGLGLGGNESYPDLFQPYGGFPDGVKVDNGHVTLPPLPGIGFEGKADLIAEMRALAA</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="80" xmlns="http://uniprot.org/uniprot">
    <accession>A9BZS3</accession>
    <name>A9BZS3_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Transcriptional regulator, LysR family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Daci_3343</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="4" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the LysR transcriptional regulatory family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX35981.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_3343"/>
    <dbReference type="PRIDE" id="A9BZS3"/>
    <dbReference type="EnsemblBacteria" id="ABX35981">
        <property type="protein sequence ID" value="ABX35981"/>
        <property type="gene ID" value="Daci_3343"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_3343"/>
    <dbReference type="eggNOG" id="COG0583">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_039613_4_1_4"/>
    <dbReference type="OMA" id="VLCHGHA"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003700">
        <property type="term" value="F:DNA-binding transcription factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005119">
        <property type="entry name" value="LysR_subst-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000847">
        <property type="entry name" value="Tscrpt_reg_HTH_LysR"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036390">
        <property type="entry name" value="WH_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00126">
        <property type="entry name" value="HTH_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03466">
        <property type="entry name" value="LysR_substrate"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00039">
        <property type="entry name" value="HTHLYSR"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46785">
        <property type="entry name" value="SSF46785"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50931">
        <property type="entry name" value="HTH_LYSR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HTH lysR-type" evidence="2">
        <location>
            <begin position="1"/>
            <end position="56"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00009437"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS50931"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ABX35981.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="331" mass="35506" checksum="159DC42783CA8050" modified="2008-01-15" version="1">MEWLEDFLALAESGNFSRAAEARSIAQPAFSRHIRALEEWVGAELFDRSAHPAALTAAGQRFQPLLEDVLAKLEAARIKARAAHDQAAASLRFAATHVLSLTFFPRWLGTLESQLRLGPIQTISDSFHACEDQALQRRVQFVLCHGHAEVPGRLDEAGYPMLQLSEDMLLPVSAPWPDAPGRALHAIDAGSATGGGQPLPLAVLAYSEASGLGRIMRSRLRGLFGAGGAGTAGEGDGRPELPQGAQTVFTAHHAALLKAMALEGRGVAWLPRSLIVDELRSGALVLAGGHAWSVPVEIRLYRQRADMADAAEALWTVACSQPRMSAEPARR</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="67" xmlns="http://uniprot.org/uniprot">
    <accession>A9C032</accession>
    <name>A9C032_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="7">Ig family protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ordered locus">Daci_3662</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="8" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="4">
            <name>Ca(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29108"/>
        </cofactor>
        <text evidence="4">Binds 1 Ca(2+) ion per subunit.</text>
    </comment>
    <comment type="caution">
        <text evidence="4">Lacks conserved residue(s) required for the propagation of feature annotation.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX36294.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="PRIDE" id="A9C032"/>
    <dbReference type="EnsemblBacteria" id="ABX36294">
        <property type="protein sequence ID" value="ABX36294"/>
        <property type="gene ID" value="Daci_3662"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_3662"/>
    <dbReference type="eggNOG" id="COG4934">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_357831_0_0_4"/>
    <dbReference type="OMA" id="GWATEIA"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016020">
        <property type="term" value="C:membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005509">
        <property type="term" value="F:calcium ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004252">
        <property type="term" value="F:serine-type endopeptidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006508">
        <property type="term" value="P:proteolysis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd04056">
        <property type="entry name" value="Peptidases_S53"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.40.10">
        <property type="match status" value="3"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.200">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015919">
        <property type="entry name" value="Cadherin-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013783">
        <property type="entry name" value="Ig-like_fold"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036852">
        <property type="entry name" value="Peptidase_S8/S53_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023828">
        <property type="entry name" value="Peptidase_S8_Ser-AS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR030400">
        <property type="entry name" value="Sedolisin_dom"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF49313">
        <property type="entry name" value="SSF49313"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52743">
        <property type="entry name" value="SSF52743"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51695">
        <property type="entry name" value="SEDOLISIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00138">
        <property type="entry name" value="SUBTILASE_SER"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-0106">Calcium</keyword>
    <keyword evidence="2" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="4" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="1" id="KW-0645">Protease</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0720">Serine protease</keyword>
    <keyword evidence="5" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="5">
        <location>
            <begin position="1"/>
            <end position="20"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5002736198" evidence="5">
        <location>
            <begin position="21"/>
            <end position="797"/>
        </location>
    </feature>
    <feature type="domain" description="Peptidase S53" evidence="6">
        <location>
            <begin position="152"/>
            <end position="529"/>
        </location>
    </feature>
    <feature type="binding site" evidence="4">
        <location>
            <position position="490"/>
        </location>
        <ligand>
            <name>Ca(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29108"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="4">
        <location>
            <position position="491"/>
        </location>
        <ligand>
            <name>Ca(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29108"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="4">
        <location>
            <position position="507"/>
        </location>
        <ligand>
            <name>Ca(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29108"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="4">
        <location>
            <position position="509"/>
        </location>
        <ligand>
            <name>Ca(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29108"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022670"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022825"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU01032"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="PROSITE" id="PS51695"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="ABX36294.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="797" mass="78869" checksum="F9ACD07724C219BA" modified="2008-01-15" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="70" xmlns="http://uniprot.org/uniprot">
    <accession>A9C069</accession>
    <name>A9C069_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(S)</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ordered locus">Daci_4004</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="6" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX36635.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012205829.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_4004"/>
    <dbReference type="PRIDE" id="A9C069"/>
    <dbReference type="EnsemblBacteria" id="ABX36635">
        <property type="protein sequence ID" value="ABX36635"/>
        <property type="gene ID" value="Daci_4004"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_4004"/>
    <dbReference type="eggNOG" id="COG5001">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="eggNOG" id="COG5002">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_000445_70_54_4"/>
    <dbReference type="OMA" id="DMACYMA"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006355">
        <property type="term" value="P:regulation of transcription, DNA-templated"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
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        <property type="entry name" value="EAL"/>
        <property type="match status" value="1"/>
    </dbReference>
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        <property type="entry name" value="GGDEF"/>
        <property type="match status" value="1"/>
    </dbReference>
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        <property type="match status" value="1"/>
    </dbReference>
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        <property type="match status" value="1"/>
    </dbReference>
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        <property type="match status" value="1"/>
    </dbReference>
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        <property type="entry name" value="EAL_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035919">
        <property type="entry name" value="EAL_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000160">
        <property type="entry name" value="GGDEF_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029787">
        <property type="entry name" value="Nucleotide_cyclase"/>
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        <property type="entry name" value="PAS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035965">
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    </dbReference>
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    <dbReference type="InterPro" id="IPR043128">
        <property type="entry name" value="Rev_trsase/Diguanyl_cyclase"/>
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        <property type="match status" value="1"/>
    </dbReference>
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        <property type="match status" value="1"/>
    </dbReference>
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        <property type="match status" value="1"/>
    </dbReference>
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        <property type="entry name" value="EAL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00267">
        <property type="entry name" value="GGDEF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00091">
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        <property type="match status" value="1"/>
    </dbReference>
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    </dbReference>
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        <property type="entry name" value="SSF55073"/>
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    </dbReference>
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    </dbReference>
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        <property type="match status" value="1"/>
    </dbReference>
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    </dbReference>
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    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="18"/>
            <end position="39"/>
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    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="205"/>
            <end position="226"/>
        </location>
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    <feature type="domain" description="PAS" evidence="2">
        <location>
            <begin position="245"/>
            <end position="318"/>
        </location>
    </feature>
    <feature type="domain" description="GGDEF" evidence="4">
        <location>
            <begin position="406"/>
            <end position="539"/>
        </location>
    </feature>
    <feature type="domain" description="EAL" evidence="3">
        <location>
            <begin position="550"/>
            <end position="806"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS50112"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="PROSITE" id="PS50883"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="PROSITE" id="PS50887"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="ABX36635.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="820" mass="91487" checksum="CE8C79EB0F150D6B" modified="2008-01-15" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="65" xmlns="http://uniprot.org/uniprot">
    <accession>A9C0I2</accession>
    <name>A9C0I2_DELAS</name>
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        <submittedName>
            <fullName evidence="7">Cation diffusion facilitator family transporter</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ordered locus">Daci_4425</name>
    </gene>
    <organism evidence="7 8">
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        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="8" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX37055.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
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        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_4425"/>
    <dbReference type="PRIDE" id="A9C0I2"/>
    <dbReference type="EnsemblBacteria" id="ABX37055">
        <property type="protein sequence ID" value="ABX37055"/>
        <property type="gene ID" value="Daci_4425"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_4425"/>
    <dbReference type="eggNOG" id="COG1230">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_013430_1_0_4"/>
    <dbReference type="OMA" id="REMDHPV"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008324">
        <property type="term" value="F:cation transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
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        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002524">
        <property type="entry name" value="Cation_efflux"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027469">
        <property type="entry name" value="Cation_efflux_TMD_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01545">
        <property type="entry name" value="Cation_efflux"/>
        <property type="match status" value="1"/>
    </dbReference>
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        <property type="entry name" value="SSF161111"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01297">
        <property type="entry name" value="CDF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4 6" id="KW-0472">Membrane</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 6" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="3 6" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="33"/>
            <end position="54"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="66"/>
            <end position="87"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="99"/>
            <end position="120"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="132"/>
            <end position="155"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="217"/>
            <end position="239"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="245"/>
            <end position="262"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="5">
        <location>
            <begin position="1"/>
            <end position="26"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="5">
        <location>
            <begin position="162"/>
            <end position="203"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="5">
        <location>
            <begin position="1"/>
            <end position="15"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic residues" evidence="5">
        <location>
            <begin position="162"/>
            <end position="187"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="5">
        <location>
            <begin position="188"/>
            <end position="203"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="ABX37055.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="351" mass="36783" checksum="365E2A52EEF02E28" modified="2008-01-15" version="1">MHSIPSLSTAGGASPRQHSHRFDEGNPLGERRAMLAAGLTAAMMVGEIAGGYGFNSMALLADGWHMGSHALALGLSAGAYAAARRLAGDTRFAFGTWKIEVLAGYTSAILLLLVAGGMAWQSVQRLFSPSPIHYEQALGVAALGLLVNLVCAWLLKGGHGHHHGHGHGHGHDHGHHHGHGRHAHGGHAGDRHHGDHGDHGDHGDHGDLNLRSAYLHVLADAATSVMAIAALFGGMAWGLGWLDPAMGLAGAVLVAAWAMGLLRDSSRVLLDAEMHAPVVSEVREAIAQAPFAAQISDLHVWRVGKARYACIVALDAPAGVDPDAVRQLLGVHEELVHVTVEVNRPQPAATH</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="64" xmlns="http://uniprot.org/uniprot">
    <accession>A9C0R2</accession>
    <name>A9C0R2_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="8">Acyl-CoA dehydrogenase domain protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="8" type="ordered locus">Daci_4506</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="9" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>FAD</name>
            <dbReference type="ChEBI" id="CHEBI:57692"/>
        </cofactor>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the acyl-CoA dehydrogenase family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX37135.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_4506"/>
    <dbReference type="PRIDE" id="A9C0R2"/>
    <dbReference type="EnsemblBacteria" id="ABX37135">
        <property type="protein sequence ID" value="ABX37135"/>
        <property type="gene ID" value="Daci_4506"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_4506"/>
    <dbReference type="eggNOG" id="COG1960">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_018204_3_2_4"/>
    <dbReference type="OMA" id="NIAREWI"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0050660">
        <property type="term" value="F:flavin adenine dinucleotide binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016627">
        <property type="term" value="F:oxidoreductase activity, acting on the CH-CH group of donors"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.540.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.110.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006091">
        <property type="entry name" value="Acyl-CoA_Oxase/DH_mid-dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR046373">
        <property type="entry name" value="Acyl-CoA_Oxase/DH_mid-dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036250">
        <property type="entry name" value="AcylCo_DH-like_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009075">
        <property type="entry name" value="AcylCo_DH/oxidase_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013786">
        <property type="entry name" value="AcylCoA_DH/ox_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037069">
        <property type="entry name" value="AcylCoA_DH/ox_N_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009100">
        <property type="entry name" value="AcylCoA_DH/oxidase_NM_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00441">
        <property type="entry name" value="Acyl-CoA_dh_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02770">
        <property type="entry name" value="Acyl-CoA_dh_M"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02771">
        <property type="entry name" value="Acyl-CoA_dh_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47203">
        <property type="entry name" value="SSF47203"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56645">
        <property type="entry name" value="SSF56645"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-0274">FAD</keyword>
    <keyword evidence="3" id="KW-0285">Flavoprotein</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Acyl-CoA_dh_N" evidence="7">
        <location>
            <begin position="6"/>
            <end position="98"/>
        </location>
    </feature>
    <feature type="domain" description="Acyl-CoA_dh_M" evidence="6">
        <location>
            <begin position="109"/>
            <end position="200"/>
        </location>
    </feature>
    <feature type="domain" description="Acyl-CoA_dh_1" evidence="5">
        <location>
            <begin position="229"/>
            <end position="364"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001974"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00009347"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022630"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022827"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="Pfam" id="PF00441"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="Pfam" id="PF02770"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="Pfam" id="PF02771"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="ABX37135.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="369" mass="39121" checksum="11B2DA5C68FCF21E" modified="2008-01-15" version="1">MEVLQQLEPLMREIIAPQAAQIDEQARYPRAALDALAAAGLLGLISASEVGGRGKGLAEAVQVIERIAQDCPCTAMVLTMHYCGVALIEPFADDEVRRDIAAGRHITTLAVSEAGSRSHIWAPTGTATAAEDVIHLNALKSMITSAGEADSYVWISRATQGEGNTLWLVDSRLPGLSIPGRFNGMGLRGNASSPIEARDVGVPRARMLGADGEGEAVKGRHLMPFFPTLIATTSIGLMQGALRRAVAHVAGTRFAESGSSLADLPTIRAYLARAQLRLEQARLLRDDTVAAVQAARPDTRTRLLQTKAAAAEAALEVTDIAMRVCGGAAFRKELGIERLFRDARAASVMAPTTDVIYDMLGKAMCEAAA</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="77" xmlns="http://uniprot.org/uniprot">
    <accession>A9C0W3</accession>
    <name>A9C0W3_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="8">L-lactate dehydrogenase (Cytochrome)</fullName>
            <ecNumber evidence="8">1.1.2.3</ecNumber>
        </submittedName>
    </protein>
    <gene>
        <name evidence="8" type="ordered locus">Daci_5798</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="9" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>FMN</name>
            <dbReference type="ChEBI" id="CHEBI:58210"/>
        </cofactor>
    </comment>
    <comment type="similarity">
        <text evidence="3">Belongs to the FMN-dependent alpha-hydroxy acid dehydrogenase family.</text>
    </comment>
    <dbReference type="EC" id="1.1.2.3" evidence="8"/>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX38426.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012207595.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_5798"/>
    <dbReference type="PRIDE" id="A9C0W3"/>
    <dbReference type="EnsemblBacteria" id="ABX38426">
        <property type="protein sequence ID" value="ABX38426"/>
        <property type="gene ID" value="Daci_5798"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_5798"/>
    <dbReference type="eggNOG" id="COG1304">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_020639_0_0_4"/>
    <dbReference type="OMA" id="DPSLDWE"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0010181">
        <property type="term" value="F:FMN binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004460">
        <property type="term" value="F:L-lactate dehydrogenase (cytochrome) activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="CDD" id="cd02809">
        <property type="entry name" value="alpha_hydroxyacid_oxid_FMN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.20.20.70">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013785">
        <property type="entry name" value="Aldolase_TIM"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012133">
        <property type="entry name" value="Alpha-hydoxy_acid_DH_FMN"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000262">
        <property type="entry name" value="FMN-dep_DH"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037396">
        <property type="entry name" value="FMN_HAD"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008259">
        <property type="entry name" value="FMN_hydac_DH_AS"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01070">
        <property type="entry name" value="FMN_dh"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF000138">
        <property type="entry name" value="Al-hdrx_acd_dh"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00557">
        <property type="entry name" value="FMN_HYDROXY_ACID_DH_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51349">
        <property type="entry name" value="FMN_HYDROXY_ACID_DH_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-0285">Flavoprotein</keyword>
    <keyword evidence="5" id="KW-0288">FMN</keyword>
    <keyword evidence="2 8" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="FMN hydroxy acid dehydrogenase" evidence="7">
        <location>
            <begin position="28"/>
            <end position="411"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="6">
        <location>
            <begin position="1"/>
            <end position="26"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="6">
        <location>
            <begin position="1"/>
            <end position="16"/>
        </location>
    </feature>
    <feature type="active site" description="Proton acceptor" evidence="4">
        <location>
            <position position="307"/>
        </location>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <position position="54"/>
        </location>
        <ligand>
            <name>glyoxylate</name>
            <dbReference type="ChEBI" id="CHEBI:36655"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <begin position="107"/>
            <end position="109"/>
        </location>
        <ligand>
            <name>FMN</name>
            <dbReference type="ChEBI" id="CHEBI:58210"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <position position="136"/>
        </location>
        <ligand>
            <name>FMN</name>
            <dbReference type="ChEBI" id="CHEBI:58210"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <position position="156"/>
        </location>
        <ligand>
            <name>FMN</name>
            <dbReference type="ChEBI" id="CHEBI:58210"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <position position="158"/>
        </location>
        <ligand>
            <name>glyoxylate</name>
            <dbReference type="ChEBI" id="CHEBI:36655"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <position position="184"/>
        </location>
        <ligand>
            <name>FMN</name>
            <dbReference type="ChEBI" id="CHEBI:58210"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <position position="193"/>
        </location>
        <ligand>
            <name>glyoxylate</name>
            <dbReference type="ChEBI" id="CHEBI:36655"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <position position="283"/>
        </location>
        <ligand>
            <name>FMN</name>
            <dbReference type="ChEBI" id="CHEBI:58210"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <position position="305"/>
        </location>
        <ligand>
            <name>FMN</name>
            <dbReference type="ChEBI" id="CHEBI:58210"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <position position="307"/>
        </location>
        <ligand>
            <name>glyoxylate</name>
            <dbReference type="ChEBI" id="CHEBI:36655"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <position position="310"/>
        </location>
        <ligand>
            <name>glyoxylate</name>
            <dbReference type="ChEBI" id="CHEBI:36655"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <begin position="337"/>
            <end position="341"/>
        </location>
        <ligand>
            <name>FMN</name>
            <dbReference type="ChEBI" id="CHEBI:58210"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <begin position="360"/>
            <end position="361"/>
        </location>
        <ligand>
            <name>FMN</name>
            <dbReference type="ChEBI" id="CHEBI:58210"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001917"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023002"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00024042"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="PIRSR" id="PIRSR000138-1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="PIRSR" id="PIRSR000138-2"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="PROSITE" id="PS51349"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="ABX38426.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="415" mass="44323" checksum="5AD4B2B671BD209B" modified="2008-01-15" version="1">MPANTVPSTTATATASAAAAPAPARPPRRLRQVLSLDDFERLARRHLPRPIHAYISGAVEDNASLADNRRAFAELAFVPRALVGVAQRDPSFELFGRRYGAPFGVAPMGIAALSAYRGDLVLAQAAQQAGVPAIMSGSSLIRLEEVMAAAPHTWFQAYLPGDQGQIDALLDRVAAAGVQTLVITVDTPVAANRENNVRAGFSTPLRPGPSLAWQGISHPRWLFGSFLKTLWRHGMPHFENNYAHRGAPILSASVMRDFSDRSHLAWPHLAAIRQRWQGQLVVKGILSAADAVLARDHGADGLIVSNHGGRQLDGAVAPLRVLPGIVRAVPGLPVMLDSGVRRGTDVLKALALGARCVFVGRPFNYAASVAGPAGVTHAMALLREEVLRDMAMLGATRLDQVTPACVRHAQAWDAF</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="55" xmlns="http://uniprot.org/uniprot">
    <accession>A9C136</accession>
    <name>A9C136_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Putative acyl-CoA dehydrogenase-related protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Daci_5871</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="2" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX38499.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012207668.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_5871"/>
    <dbReference type="PRIDE" id="A9C136"/>
    <dbReference type="EnsemblBacteria" id="ABX38499">
        <property type="protein sequence ID" value="ABX38499"/>
        <property type="gene ID" value="Daci_5871"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_5871"/>
    <dbReference type="eggNOG" id="COG1960">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_058409_1_0_4"/>
    <dbReference type="OMA" id="CWLGGAR"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016627">
        <property type="term" value="F:oxidoreductase activity, acting on the CH-CH group of donors"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.110.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR046373">
        <property type="entry name" value="Acyl-CoA_Oxase/DH_mid-dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009100">
        <property type="entry name" value="AcylCoA_DH/oxidase_NM_dom"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56645">
        <property type="entry name" value="SSF56645"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ABX38499.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="363" mass="38100" checksum="663124BFF2A43B60" modified="2008-01-15" version="1">MAQHNNEYAKAWTDSETLARALHGHEELSPSDQLALLVAQSADRLPLPGRGHTLQRWRALAEVAAHSLGLAKLYEGHTDALAILSELQADLATEGLRWAVWCAEPPGERVQATAASPDATQRTALQAGSAVRLSGHKPWCSGARAVDRALVSGWLADGQRCLIAVTMDQPGIRRDDSHWQAVGMAASASADVHFDGATGVLVGAPGQYLSRPGFHHGGAGVAACWYGAAARIASHLLQAAIQGGDPHRLAHLGALDVSLGSAASLLREAAACIDARPSDPCLLAVSRARLAVEAAAEDVLRRVPRAIGPGPLCKNKSLALLMADLPVFIRQSHAERDQAALGRLLAERTQAQAQGAGACAWTL</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="68" xmlns="http://uniprot.org/uniprot">
    <accession>A9C149</accession>
    <name>A9C149_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Cyclopropane-fatty-acyl-phospholipid synthase</fullName>
            <ecNumber evidence="3">2.1.1.79</ecNumber>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Daci_5884</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="4" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the CFA/CMAS family.</text>
    </comment>
    <dbReference type="EC" id="2.1.1.79" evidence="3"/>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX38512.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012207681.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_5884"/>
    <dbReference type="PRIDE" id="A9C149"/>
    <dbReference type="EnsemblBacteria" id="ABX38512">
        <property type="protein sequence ID" value="ABX38512"/>
        <property type="gene ID" value="Daci_5884"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_5884"/>
    <dbReference type="eggNOG" id="COG2230">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_026434_0_2_4"/>
    <dbReference type="OMA" id="LDPTMMY"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008825">
        <property type="term" value="F:cyclopropane-fatty-acyl-phospholipid synthase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008610">
        <property type="term" value="P:lipid biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0032259">
        <property type="term" value="P:methylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.150">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003333">
        <property type="entry name" value="Mycolic_cyclopropane_synthase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029063">
        <property type="entry name" value="SAM-dependent_MTases_sf"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF003085">
        <property type="entry name" value="CMAS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53335">
        <property type="entry name" value="SSF53335"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-0489">Methyltransferase</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0808">Transferase</keyword>
    <feature type="active site" evidence="2">
        <location>
            <position position="401"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00010815"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="PIRSR" id="PIRSR003085-1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ABX38512.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="422" mass="47996" checksum="C1F0DD7C95A5C3AA" modified="2008-01-15" version="1">MNTTAAPLLSPSAAAPRRTPARARRVLNLLERLPHGQLDLEQPDGRLLHLPRPPSGAADAHCVLHDWQALERTLKSGDIGLAEGYIAGEWDSPDLAALLRLCMANRDHVQSLVYGSWWGRLGYRLRHLLQRNTRAGSARNIHAHYDLGNDFYRLWLDPGMSYSAAWFQGRTGQALRNADLQEAQQAKLRRTLDEVRLQPGQRLLEIGCGWGGLAEAAAQEFGARVTGVTLSREQLVWGQQRMQQAGLADAVELRYQDYRDLPARHAGEPFDAIVSIEMFEAVGREYWRGYFQTLRDCLKPGGLACIQTITLREDLFARYLRSTDFIQQYIFPGGLLPSIPAFEQEAHRAGLVVERRMAFGRDYAETLRRWRQSFEERLEAVRAQGFDERFVRIWTFYLAYCEAAFDTGNTDVVQFTLRKPLP</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="88" xmlns="http://uniprot.org/uniprot">
    <accession>A9C153</accession>
    <name>A9C153_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Transcriptional regulator, AraC family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_5888</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX38516.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_5888"/>
    <dbReference type="PRIDE" id="A9C153"/>
    <dbReference type="EnsemblBacteria" id="ABX38516">
        <property type="protein sequence ID" value="ABX38516"/>
        <property type="gene ID" value="Daci_5888"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_5888"/>
    <dbReference type="eggNOG" id="COG2207">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_049704_0_1_4"/>
    <dbReference type="OMA" id="FKSEAHF"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003700">
        <property type="term" value="F:DNA-binding transcription factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043565">
        <property type="term" value="F:sequence-specific DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035418">
        <property type="entry name" value="AraC-bd_2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009057">
        <property type="entry name" value="Homeobox-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018060">
        <property type="entry name" value="HTH_AraC"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020449">
        <property type="entry name" value="Tscrpt_reg_HTH_AraC-type"/>
    </dbReference>
    <dbReference type="Pfam" id="PF14525">
        <property type="entry name" value="AraC_binding_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12833">
        <property type="entry name" value="HTH_18"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00032">
        <property type="entry name" value="HTHARAC"/>
    </dbReference>
    <dbReference type="SMART" id="SM00342">
        <property type="entry name" value="HTH_ARAC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46689">
        <property type="entry name" value="SSF46689"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01124">
        <property type="entry name" value="HTH_ARAC_FAMILY_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HTH araC/xylS-type" evidence="1">
        <location>
            <begin position="252"/>
            <end position="351"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS01124"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX38516.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="382" mass="41931" checksum="B56519575396EE95" modified="2008-01-15" version="1">MRAGGDSKTRAVRDCPAGPCVFLRRNFAMQPAANALPSTTFDTCQTLSADRFEAWRASISVLFDVAPVEHRTASGDSFHASVHATHLGQLLLGDLRFGAQRFSRNKARAARDGLDHYLVQWYRSGSFVGQHDGSSELQVNAGDVVVFDMARTQQTLAEHSHVLSLIVPRRLGDAAFGTHGADLHGTVLASGSIFAGLLADHLDALHRRLPTIALLQADDVVHATTQMLAACLRPSQRTLAEARNEVQAATLERIQRHIAQNLAAPLTPEILCRRFGISRHRLYHLFEPLGGVMRYVQQRRLQRAFHTLSNPTCRRLRIADVATRLGFASEAHFSRAFRAAFGHTPSDVRAMAEAAHTVRINPPPGTTTTSAEYADWLLGLMA</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="70" xmlns="http://uniprot.org/uniprot">
    <accession>A9C1L3</accession>
    <name>A9C1L3_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Short-chain dehydrogenase/reductase SDR</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_6048</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the short-chain dehydrogenases/reductases (SDR) family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX38676.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012207845.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_6048"/>
    <dbReference type="PRIDE" id="A9C1L3"/>
    <dbReference type="EnsemblBacteria" id="ABX38676">
        <property type="protein sequence ID" value="ABX38676"/>
        <property type="gene ID" value="Daci_6048"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_6048"/>
    <dbReference type="eggNOG" id="COG0300">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_010194_2_1_4"/>
    <dbReference type="OMA" id="RAMTVYA"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016491">
        <property type="term" value="F:oxidoreductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036291">
        <property type="entry name" value="NAD(P)-bd_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020904">
        <property type="entry name" value="Sc_DH/Rdtase_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002347">
        <property type="entry name" value="SDR_fam"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00106">
        <property type="entry name" value="adh_short"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00081">
        <property type="entry name" value="GDHRDH"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00080">
        <property type="entry name" value="SDRFAMILY"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51735">
        <property type="entry name" value="SSF51735"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00061">
        <property type="entry name" value="ADH_SHORT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="RuleBase" id="RU000363"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX38676.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="266" mass="28647" checksum="1A1DF5D76B239D96" modified="2008-01-15" version="1">MTTSSRSPAPLAFITGASSGIGQALAWHAYQQGWSLALVARRGDVMAQWAAQQGLEASRFAIYEADVAAPDSIIAAARRCEQQQGLPDVVIANAGVSWGVDTSMREDIDTMQQVLAVNTMGVAASFHPFIAPMVQRGSGQLVGIASVAGLRGLPGHGAYCASKAAVIAYCESLRGELRSSGVKVTTLLPGYVDTPLTRGNRYGMPFLLQPHEFAARAWRSIDAGRSLAIIPWQMAWVGRLMKILPNPLFDRLLVGRKRKHRHSKNP</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="80" xmlns="http://uniprot.org/uniprot">
    <accession>A9C1U8</accession>
    <name>A9C1U8_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="5 7">ATP-dependent Clp protease proteolytic subunit</fullName>
            <ecNumber evidence="5">3.4.21.92</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="5">Endopeptidase Clp</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="5" type="primary">clpP</name>
        <name evidence="8" type="ordered locus">Daci_2645</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="9" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="5">Cleaves peptides in various proteins in a process that requires ATP hydrolysis. Has a chymotrypsin-like activity. Plays a major role in the degradation of misfolded proteins.</text>
    </comment>
    <comment type="subunit">
        <text evidence="5">Fourteen ClpP subunits assemble into 2 heptameric rings which stack back to back to give a disk-like structure with a central cavity, resembling the structure of eukaryotic proteasomes.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="5">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="1 5 7">Belongs to the peptidase S14 family.</text>
    </comment>
    <dbReference type="EC" id="3.4.21.92" evidence="5"/>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX35283.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012204529.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_2645"/>
    <dbReference type="MEROPS" id="S14.001"/>
    <dbReference type="PRIDE" id="A9C1U8"/>
    <dbReference type="EnsemblBacteria" id="ABX35283">
        <property type="protein sequence ID" value="ABX35283"/>
        <property type="gene ID" value="Daci_2645"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_2645"/>
    <dbReference type="eggNOG" id="COG0740">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_058707_3_2_4"/>
    <dbReference type="OMA" id="RDYWMKA"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004176">
        <property type="term" value="F:ATP-dependent peptidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004252">
        <property type="term" value="F:serine-type endopeptidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006508">
        <property type="term" value="P:proteolysis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd07017">
        <property type="entry name" value="S14_ClpP_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00444">
        <property type="entry name" value="ClpP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001907">
        <property type="entry name" value="ClpP"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029045">
        <property type="entry name" value="ClpP/crotonase-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023562">
        <property type="entry name" value="ClpP/TepA"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR033135">
        <property type="entry name" value="ClpP_His_AS"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10381">
        <property type="entry name" value="PTHR10381"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00574">
        <property type="entry name" value="CLP_protease"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00127">
        <property type="entry name" value="CLPPROTEASEP"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52096">
        <property type="entry name" value="SSF52096"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00493">
        <property type="entry name" value="clpP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00382">
        <property type="entry name" value="CLP_PROTEASE_HIS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="3 5 8" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="2 5 8" id="KW-0645">Protease</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4 5" id="KW-0720">Serine protease</keyword>
    <feature type="active site" description="Nucleophile" evidence="5">
        <location>
            <position position="106"/>
        </location>
    </feature>
    <feature type="active site" evidence="5 6">
        <location>
            <position position="131"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00007039"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022670"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022825"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00444"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU10086"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="RuleBase" id="RU003567"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="ABX35283.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="202" mass="22231" checksum="7BAA3B70544507F5" modified="2008-01-15" version="1">MSALETQGLGMIPMVIEQSGRGERSYDIYSRLLKDRVIFLVGPVNDQTANLVVAQLLFLESENPDKDISFYINSPGGSVSAGLAIFDTMNFIKPDVSTLCTGIAASMGAFLLAAGTKGKRFALPNSQVMIHQPLGGMQGQATEIEIHAREILKTRERLNKILAERTGQPLEKIQHDTERDYFLSAEEAKDYGLVDQVINKRS</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="40" xmlns="http://uniprot.org/uniprot">
    <accession>A9C1Y0</accession>
    <name>A9C1Y0_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_2978</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX35616.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_2978"/>
    <dbReference type="PRIDE" id="A9C1Y0"/>
    <dbReference type="EnsemblBacteria" id="ABX35616">
        <property type="protein sequence ID" value="ABX35616"/>
        <property type="gene ID" value="Daci_2978"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_2978"/>
    <dbReference type="eggNOG" id="ENOG5033DJ2">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_3026769_0_0_4"/>
    <dbReference type="OMA" id="TPRPTPM"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="53"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic residues" evidence="1">
        <location>
            <begin position="36"/>
            <end position="53"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX35616.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="53" mass="5851" checksum="C0CBC19115F73E80" modified="2008-01-15" version="1">MGNKIVTEADRKFTPQPPLPNGVTLPTPGRGQRVSRARGAHTHTKKNPGKRHR</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="61" xmlns="http://uniprot.org/uniprot">
    <accession>A9C200</accession>
    <name>A9C200_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Enoyl-CoA hydratase/isomerase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Daci_2998</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="4" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX35636.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012204842.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_2998"/>
    <dbReference type="PRIDE" id="A9C200"/>
    <dbReference type="EnsemblBacteria" id="ABX35636">
        <property type="protein sequence ID" value="ABX35636"/>
        <property type="gene ID" value="Daci_2998"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_2998"/>
    <dbReference type="eggNOG" id="COG1024">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_009834_22_1_4"/>
    <dbReference type="OMA" id="GKPYIAF"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003860">
        <property type="term" value="F:3-hydroxyisobutyryl-CoA hydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016853">
        <property type="term" value="F:isomerase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029045">
        <property type="entry name" value="ClpP/crotonase-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045004">
        <property type="entry name" value="ECH_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR032259">
        <property type="entry name" value="HIBYL-CoA-H"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43176">
        <property type="entry name" value="PTHR43176"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF16113">
        <property type="entry name" value="ECH_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52096">
        <property type="entry name" value="SSF52096"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="3" id="KW-0413">Isomerase</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="ECH_2" evidence="2">
        <location>
            <begin position="17"/>
            <end position="348"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF16113"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ABX35636.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="363" mass="39190" checksum="350726EB70E90615" modified="2008-01-15" version="1">MTGAAGEVLSEVRGRMGMITLNRAKALNALSLGMVRDLLATLLAWQKDEQVLAVAIRGMGKEGVFGAFCAGGDIRFLHGAGSTGNPQLEDFFTEEYALNHLIHTFGKPYIAFMDGIVMGGGMGISQGGTMRIVTERTKMAMPETAIGLFPDVGGGYFLSRCPGHAGEWLALTGDVIGAADALDFGLADGYLPSDQQPALWDALAAGSFADAAAVEALVKSKFTAPAKPAAQPRAEIDRVFALPTVAAMVQALEAADGEWAQHTAATLRKRSPLMLHVVLEQIRRARGMTLAQDLRMERDMVRHCFYLRPGQSETIEGIRALAVDKDHHPRWNPARIEDVQDAQWRAFFDSPWPAHSHPLAALD</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="62" xmlns="http://uniprot.org/uniprot">
    <accession>A9C236</accession>
    <name>A9C236_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Beta-lactamase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_3034</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX35672.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012204878.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_3034"/>
    <dbReference type="MEROPS" id="S12.950"/>
    <dbReference type="PRIDE" id="A9C236"/>
    <dbReference type="EnsemblBacteria" id="ABX35672">
        <property type="protein sequence ID" value="ABX35672"/>
        <property type="gene ID" value="Daci_3034"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_3034"/>
    <dbReference type="eggNOG" id="COG1680">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_020027_11_2_4"/>
    <dbReference type="OMA" id="FAEPRVY"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.710.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001466">
        <property type="entry name" value="Beta-lactam-related"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012338">
        <property type="entry name" value="Beta-lactam/transpept-like"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00144">
        <property type="entry name" value="Beta-lactamase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56601">
        <property type="entry name" value="SSF56601"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Beta-lactamase" evidence="1">
        <location>
            <begin position="29"/>
            <end position="394"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF00144"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX35672.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="413" mass="42975" checksum="1CFECB6D43A86A13" modified="2008-01-15" version="1">MTIALSAAPSAPAALPAAPLNSPLSDRIQAVVRQALEAQRLVGAVVLVARGGALVHRQAAGWADRERGLPMAVDAVFRLASASKPIVSAAALVLVARGLLALDEGVDRWLPQFRPRLADGGPARITVRQLLSHTAGLGYRFFEADAQGPYARAGVSDGMDRQAIGLAENLERIASVPLLYAPGTAWGYSLATDVLGALIEQVHGRPLDQAVRDLVTGPLGMTDTGFAVTDALAVQRVAKAYVSDVPQPHPLAEGETVSPFEGSIGIAFSPSRIFDAQAFASGGAGMAGTAGDFLRLLEALRQGGNTLLPDALVAEMARDQTGGLALPNAPGFGFGLGFSVLRDAAQAASPESVGTWRWGGAYGHSWFVDRAQELSVVAFTNTLYEGMSGRFVNDLRDAVYGVCEVQGASGAPQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="86" xmlns="http://uniprot.org/uniprot">
    <accession>A9C2S1</accession>
    <name>A9C2S1_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Transcriptional regulator, LysR family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Daci_3788</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="4" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the LysR transcriptional regulatory family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX36420.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012205614.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_3788"/>
    <dbReference type="PRIDE" id="A9C2S1"/>
    <dbReference type="EnsemblBacteria" id="ABX36420">
        <property type="protein sequence ID" value="ABX36420"/>
        <property type="gene ID" value="Daci_3788"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_3788"/>
    <dbReference type="eggNOG" id="COG0583">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_039613_16_4_4"/>
    <dbReference type="OMA" id="LWLICPS"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003700">
        <property type="term" value="F:DNA-binding transcription factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005119">
        <property type="entry name" value="LysR_subst-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000847">
        <property type="entry name" value="Tscrpt_reg_HTH_LysR"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036390">
        <property type="entry name" value="WH_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00126">
        <property type="entry name" value="HTH_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03466">
        <property type="entry name" value="LysR_substrate"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46785">
        <property type="entry name" value="SSF46785"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50931">
        <property type="entry name" value="HTH_LYSR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HTH lysR-type" evidence="2">
        <location>
            <begin position="1"/>
            <end position="61"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00009437"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS50931"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ABX36420.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="310" mass="33924" checksum="DDB52814D2217B9F" modified="2008-01-15" version="1">MPMKSLQDLDIFVRTADSGSLSATARALDLTPAAASAALKRLEAELGVTLFVRSTRSLRLTQEGELFLEHCRPALAGLRQVRDQLAGGQAALRGTLQLAAPSDLGRNVLMPWLDEFQSQHAGVDLRLHLSDRAANVYSEPVDAAFRYGRPQDSSLVALPLSDTHRRVLCAAPSYLQERGAPATPHDLAGHDCLCFMLGEEVHDRWSFWPAGQGAAVPEPVHVRVRGRNVANDGDAVRRWAVAGRGIAYKSYFDVAEDLARGRLLALCTDWTTECVPLFLVAPSRRQFTPLVRALRDFVAVRLAELEAAQP</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="40" xmlns="http://uniprot.org/uniprot">
    <accession>A9C2V2</accession>
    <name>A9C2V2_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">ERF family protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_4125</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX36756.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012205940.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_4125"/>
    <dbReference type="PRIDE" id="A9C2V2"/>
    <dbReference type="EnsemblBacteria" id="ABX36756">
        <property type="protein sequence ID" value="ABX36756"/>
        <property type="gene ID" value="Daci_4125"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_4125"/>
    <dbReference type="eggNOG" id="ENOG5032RPD">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_102104_0_1_4"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007499">
        <property type="entry name" value="ERF_bacteria_virus"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04404">
        <property type="entry name" value="ERF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="117"/>
            <end position="136"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX36756.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="202" mass="21689" checksum="349CA0E6E1660387" modified="2008-01-15" version="1">MQAISAALVKAQKEFGPALKTSQNPHFRSKYADLSACVEAVIDGLNNNGIMLMQPCHEDPSGVTVETLFIHESGEQISAGKLHVPASKQDPQGYGSALTYARRYGLMAACGIAPEDDDGNAASKKPAPRHKPTDGALVSAERMAVCDSVVRAINERMDANDVHGAYGELIGITDPEEKTYLWPKLDSKTRSSLKAHAQSIKN</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="49" xmlns="http://uniprot.org/uniprot">
    <accession>A9C381</accession>
    <name>A9C381_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ordered locus">Daci_4563</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="5" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Periplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the UPF0065 (bug) family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX37192.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012206362.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_4563"/>
    <dbReference type="PRIDE" id="A9C381"/>
    <dbReference type="EnsemblBacteria" id="ABX37192">
        <property type="protein sequence ID" value="ABX37192"/>
        <property type="gene ID" value="Daci_4563"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_4563"/>
    <dbReference type="eggNOG" id="COG3181">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_045683_0_0_4"/>
    <dbReference type="OMA" id="YAFTSWY"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0042597">
        <property type="term" value="C:periplasmic space"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.190.150">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005064">
        <property type="entry name" value="BUG"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR042100">
        <property type="entry name" value="Bug_dom1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR42928">
        <property type="entry name" value="PTHR42928"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03401">
        <property type="entry name" value="TctC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF017082">
        <property type="entry name" value="YflP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="3">
        <location>
            <begin position="1"/>
            <end position="25"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5002735337" evidence="3">
        <location>
            <begin position="26"/>
            <end position="329"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004418"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00006987"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="ABX37192.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="329" mass="34474" checksum="8751B879A9F1E21C" modified="2008-01-15" version="1">MPAPVSRRLLVCCAALLTCATPGWAAPAADAWPSQPLKIMVGFAAGGANDIVARILAKELQQRLGQSVVVENRGGAGGLIASEVVAKAPKNGCTLLLGSIGSNTVAPVLAKKLSFDPRKDLEPITLVAESGNALLVNAALPYKTVQEMIEAARKAPGSINYASSGNGSTLHLAGALFAQQAGVNLVHVPYRGNGPAITDVSGGQVQAIFSGIPPAITSAKTGQTRILAVTTKQRVKNLPNVPTVAEAGLPGYAFTSWYGLFTTGGTDPAIVERLAQEVRKIMERPEVQAQFEAQGLDPETSDPKSFKQQIDRELTRWSRDVKTMGITAD</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="55" xmlns="http://uniprot.org/uniprot">
    <accession>A9C383</accession>
    <name>A9C383_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ordered locus">Daci_4565</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="5" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Periplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the UPF0065 (bug) family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX37194.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012206364.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_4565"/>
    <dbReference type="PRIDE" id="A9C383"/>
    <dbReference type="EnsemblBacteria" id="ABX37194">
        <property type="protein sequence ID" value="ABX37194"/>
        <property type="gene ID" value="Daci_4565"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_4565"/>
    <dbReference type="eggNOG" id="COG3181">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_045683_0_0_4"/>
    <dbReference type="OMA" id="NDARFKT"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0042597">
        <property type="term" value="C:periplasmic space"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.190.150">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005064">
        <property type="entry name" value="BUG"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR042100">
        <property type="entry name" value="Bug_dom1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006311">
        <property type="entry name" value="TAT_signal"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR42928">
        <property type="entry name" value="PTHR42928"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03401">
        <property type="entry name" value="TctC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF017082">
        <property type="entry name" value="YflP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51318">
        <property type="entry name" value="TAT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="3">
        <location>
            <begin position="1"/>
            <end position="29"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5002736120" evidence="3">
        <location>
            <begin position="30"/>
            <end position="331"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004418"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00006987"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="ABX37194.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="331" mass="34065" checksum="0FE4BD52EA2E771D" modified="2008-01-15" version="1">MNRITSGRRGFIRTAVSFAALAAASAASAVQARAFPAKPLTLVVPFAPGGNVDIVARTLGIPLSRHAGQSVIVDNRAGGGGAVGSGWVARAEPDGHTLLVATPGQLGTLPEMIKLPYRADSFAPIAVVSRTPVVVVVRANDARFKTAADFIKAMKAKDGSVTVGHAGPGSPNHLAVLQLEDAVKVRVNPVPYKGSGPALVDLIGGQIDAVVDQITSSTPHIKSGALRALFVLGPRAGGGLADVPDLAQMGLPVFDATTFVGVFAPKGAPTASVDSLYGWISQSVADPEFSRLIRELGSEPFPASAAVLQRLVSEEAALAARLTRQGRLRAE</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="56" xmlns="http://uniprot.org/uniprot">
    <accession>A9C3F0</accession>
    <name>A9C3F0_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">NAD-dependent epimerase/dehydratase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_4632</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX37261.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012206431.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_4632"/>
    <dbReference type="PRIDE" id="A9C3F0"/>
    <dbReference type="EnsemblBacteria" id="ABX37261">
        <property type="protein sequence ID" value="ABX37261"/>
        <property type="gene ID" value="Daci_4632"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_4632"/>
    <dbReference type="eggNOG" id="COG0702">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_007383_6_5_4"/>
    <dbReference type="OMA" id="SWEITRQ"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001509">
        <property type="entry name" value="Epimerase_deHydtase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036291">
        <property type="entry name" value="NAD(P)-bd_dom_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01370">
        <property type="entry name" value="Epimerase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51735">
        <property type="entry name" value="SSF51735"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Epimerase" evidence="1">
        <location>
            <begin position="3"/>
            <end position="189"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF01370"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX37261.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="289" mass="29756" checksum="CD9F6E77D5F1F9D0" modified="2008-01-15" version="1">MRILVCGGNGFIGRHIVNLLALAGHDPVARSRHSLPALDYAKATTPEAWLPHLAGVDAVVNAVGVLRDSASRPIDAMHAQAPIALFDACAAAGVRRVVQISALGIEGSATRYATTKRTADEHLLALTAAGHLQGCVVRPSVVFGAGGASSEMFLSMARLPALLLPRPVLQARVQPVAVRDLAEAVAGLVTSPEPVGMIEIGGPLPLPLAALIASLRAQMGRAPARVGTLPGWLTRASARAGDWVSASPWCSETLAMLASDNVTDPAGLQGLLGRPGIAPAQLLATLRHG</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="56" xmlns="http://uniprot.org/uniprot">
    <accession>A9C3I3</accession>
    <name>A9C3I3_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="7">Abasic site processing protein</fullName>
            <ecNumber evidence="7">3.4.-.-</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="8" type="ordered locus">Daci_4665</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="9" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1 7">Belongs to the SOS response-associated peptidase family.</text>
    </comment>
    <dbReference type="EC" id="3.4.-.-" evidence="7"/>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX37294.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012206464.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_4665"/>
    <dbReference type="PRIDE" id="A9C3I3"/>
    <dbReference type="EnsemblBacteria" id="ABX37294">
        <property type="protein sequence ID" value="ABX37294"/>
        <property type="gene ID" value="Daci_4665"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_4665"/>
    <dbReference type="eggNOG" id="COG2135">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_035990_3_0_4"/>
    <dbReference type="OMA" id="LEWREVM"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008233">
        <property type="term" value="F:peptidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003697">
        <property type="term" value="F:single-stranded DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006974">
        <property type="term" value="P:cellular response to DNA damage stimulus"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0018142">
        <property type="term" value="P:protein-DNA covalent cross-linking"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006508">
        <property type="term" value="P:proteolysis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.1680.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003738">
        <property type="entry name" value="SRAP"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036590">
        <property type="entry name" value="SRAP-like"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR13604">
        <property type="entry name" value="PTHR13604"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02586">
        <property type="entry name" value="SRAP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF143081">
        <property type="entry name" value="SSF143081"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-0190">Covalent protein-DNA linkage</keyword>
    <keyword evidence="3" id="KW-0227">DNA damage</keyword>
    <keyword evidence="6" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="4 7" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="2 7" id="KW-0645">Protease</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00008136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022670"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022763"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023124"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="RuleBase" id="RU364100"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="ABX37294.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="232" mass="26043" checksum="3F478C8AD5B70DB9" modified="2008-01-15" version="1">MCNRYNTPREIEVERMWRVGRQAPLPWWKPHVTPLALGPYIKPGGEIDVGQWGMIPRSSKTRRPMTAGGKPMSTNNARREMLAKSWTFAPAWRAGQRCLIPVESWVEPYWGLGSRNVWWSFRRADGSPAALAGLYSEWTDPETGELVPNYTMITQPADGHPVLALMHRTEKEKRGVVMLEPGDWDAWLNGKPKQADALIKLPPLGVLVSGAERPEEEALLPDEQLAALKAEG</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="40" xmlns="http://uniprot.org/uniprot">
    <accession>A9BLI1</accession>
    <name>A9BLI1_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">FliD_C domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Daci_3835</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="4" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX36466.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012205660.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_3835"/>
    <dbReference type="PRIDE" id="A9BLI1"/>
    <dbReference type="EnsemblBacteria" id="ABX36466">
        <property type="protein sequence ID" value="ABX36466"/>
        <property type="gene ID" value="Daci_3835"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_3835"/>
    <dbReference type="eggNOG" id="ENOG50349PZ">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_1007315_0_0_4"/>
    <dbReference type="OMA" id="SANWNRM"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009288">
        <property type="term" value="C:bacterial-type flagellum"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0007155">
        <property type="term" value="P:cell adhesion"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010809">
        <property type="entry name" value="FliD_C"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07195">
        <property type="entry name" value="FliD_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="FliD_C" evidence="2">
        <location>
            <begin position="107"/>
            <end position="257"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="19"/>
            <end position="69"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="19"/>
            <end position="51"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="52"/>
            <end position="69"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF07195"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ABX36466.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="278" mass="28095" checksum="0ED5296081F28F84" modified="2008-01-15" version="1">MSIRTDNLNVQSLLARAQSKLNSSTTQAASDSAGKKSAAETSATKTDSNSTKTETTEAEKVRKLAPSLTKAHERIAAQAQAGSTSLSALGQFKSSLVDLASAGKDVAALSATSTTQSVQGALEKLVARYNSSVAKGSVSAAAGSSTDVGATRALRELRSAIMSVTGSATAPSLGKLGIVQRQDGTLAVDAKALEKSMAADAAGVTSALAGIGKAVENSANSALSTGSRLSSSMASLGDRVKTLQQQQSAVVATAEKLGDSLVGSANWNRMVLDAYLKN</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="53" xmlns="http://uniprot.org/uniprot">
    <accession>A9BLJ0</accession>
    <name>A9BLJ0_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Type VI secretion protein, VC_A0114 family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Daci_3844</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="2" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX36475.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012205669.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_3844"/>
    <dbReference type="PRIDE" id="A9BLJ0"/>
    <dbReference type="EnsemblBacteria" id="ABX36475">
        <property type="protein sequence ID" value="ABX36475"/>
        <property type="gene ID" value="Daci_3844"/>
    </dbReference>
    <dbReference type="GeneID" id="60688144"/>
    <dbReference type="KEGG" id="dac:Daci_3844"/>
    <dbReference type="eggNOG" id="COG3522">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_031690_3_0_4"/>
    <dbReference type="OMA" id="YTYFELD"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010263">
        <property type="entry name" value="T6SS_TssK"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR35566">
        <property type="entry name" value="PTHR35566"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF05936">
        <property type="entry name" value="T6SS_VasE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR03353">
        <property type="entry name" value="VI_chp_4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ABX36475.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="444" mass="50211" checksum="3D1E9F3456B220E6" modified="2008-01-15" version="1">MVWQRKVIWAEGMFLRPQHFQQQERFLFRQLQSRSLPGQPFFWGFSELELDTDLLRMGKLGIRSAHGVLPDGTPFQLPGDDEAPTPLDIGKDFKDVVVHLALPLRRFSGSEVTFGEGSQSPARYLSDVTEVADSNDVGAQPAEVQLGRLRLSLRPAHELTEGWVSLPVAHVVERQASGGVLLEPGFIPTVVNNGPSSVLNTFCKEIHGLLRQRGEVLAQRMIQPERGGIGEVGDFLLLQLINHWTGAAQHWVRTASIHPERLFEELLRLAAELTTFDHERRRPEVLPAYDHDDLRRSFPPLMLELRRSLSSVLEQNAIQIPLHDRQYGVRVALIPSTELLTTCDFVLAAHAQTTPEFLRTHFPTQTKLGPVERIRDLVNLHLPGVTLRPLPIAPREIPYHAGYNYFEVDTTHDLWNQLQSSGGLAMHVSGEFPDLQLEFWAIRR</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="59" xmlns="http://uniprot.org/uniprot">
    <accession>A9BLN5</accession>
    <name>A9BLN5_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">NADH:flavin oxidoreductase/NADH oxidase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_3889</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX36520.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012205714.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_3889"/>
    <dbReference type="PRIDE" id="A9BLN5"/>
    <dbReference type="EnsemblBacteria" id="ABX36520">
        <property type="protein sequence ID" value="ABX36520"/>
        <property type="gene ID" value="Daci_3889"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_3889"/>
    <dbReference type="eggNOG" id="COG1902">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_012153_0_0_4"/>
    <dbReference type="OMA" id="WHVGRFS"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0010181">
        <property type="term" value="F:FMN binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016491">
        <property type="term" value="F:oxidoreductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.20.20.70">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013785">
        <property type="entry name" value="Aldolase_TIM"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001155">
        <property type="entry name" value="OxRdtase_FMN_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045247">
        <property type="entry name" value="Oye-like"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR22893">
        <property type="entry name" value="PTHR22893"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00724">
        <property type="entry name" value="Oxidored_FMN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Oxidored_FMN" evidence="1">
        <location>
            <begin position="9"/>
            <end position="342"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF00724"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX36520.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="366" mass="39105" checksum="A6E939E3B5E1E017" modified="2008-01-15" version="1">MTDHSLHTDLFSPTQLGGLSLANRFVMAPLTRSRAGDDGVPTELHAAYYAQRASAGLLISEAVNISAQGRGYNLTPGIWTEQQVAGWKKVTDAVHAAGGKIVAQLWHVGRYSHVDLQPGGVAPVAPSAIKAEGVTFTPNGVAEVSMPRALETSEIPGIVEQYRHAAECAKRAGFDGVEVHSANGYLLDQFLRDSTNHRSDAYGGSIENRARLTLEVTDTVAKVWGADRVGIRLSPVTPNAGNTPLDSDVMALYGYLIPQLNRFGLAYLHVVEGATGGSRELPPGVDLDALRKLFDGAYMGNNGYDLELAMDRRAKGLIDTVAIGRPFIANPDLVARLRHGKELAVAPHEAYYGGGAKGYIDWPVAA</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="57" xmlns="http://uniprot.org/uniprot">
    <accession>A9BLV6</accession>
    <name>A9BLV6_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Metal dependent phosphohydrolase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_4264</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX36895.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012206067.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_4264"/>
    <dbReference type="PRIDE" id="A9BLV6"/>
    <dbReference type="EnsemblBacteria" id="ABX36895">
        <property type="protein sequence ID" value="ABX36895"/>
        <property type="gene ID" value="Daci_4264"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_4264"/>
    <dbReference type="eggNOG" id="COG2206">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_051988_0_0_4"/>
    <dbReference type="OMA" id="AFKLTVM"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008081">
        <property type="term" value="F:phosphoric diester hydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="CDD" id="cd00077">
        <property type="entry name" value="HDc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003607">
        <property type="entry name" value="HD/PDEase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037522">
        <property type="entry name" value="HD_GYP_dom"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51832">
        <property type="entry name" value="HD_GYP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HD-GYP" evidence="1">
        <location>
            <begin position="122"/>
            <end position="317"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS51832"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX36895.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="454" mass="50278" checksum="9C6A73E00F462BDC" modified="2008-01-15" version="1">MTDVAAVRNPPTAQGWKDEGVHFLRAVTDMAEHCNVVTGEPIFNDKGVKLVDKGARIDGNMYERLVKHKLRDPIDKHLGVDNRVDVLAIEAQAMVQCETVDLMRRLVQSLGGTDRLLAPLRLMVLPPQIAFKLTVMREQRPELFAHSLQMMLVAVYLALQSEWSERECGPLATAALLHDVGMLYMDPAWTDPNYRLTGAERKHLVAHSVTGMLIMRGAGAYSQDVEMAVLEHHERMDGTGYPRGVHGEAISKMGRILLLAEVVSAFFDKFQDLPGQRLSLMLRMNHRRYPADLVGILLPLLYDEISPGTPLPPLQAEVTHSVAALSAAFQMWDTFSQAFPERWQAMPDHQAAVYIDSSIGGLQKQLAEAGLHPSQQTDLLAYLKDDVQGMSELALLSREALWQLQAIVNACLRRWPAINARTHAVDTAVAQWCEACMQIDATPPAGGAARAPAH</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="70" xmlns="http://uniprot.org/uniprot">
    <accession>A9BLZ2</accession>
    <name>A9BLZ2_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">Outer membrane lipoprotein Blc</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="5" type="ordered locus">Daci_4300</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="6" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="2">Involved in the storage or transport of lipids necessary for membrane maintenance under stressful conditions. Displays a binding preference for lysophospholipids.</text>
    </comment>
    <comment type="subunit">
        <text evidence="2">Homodimer.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="2">Cell outer membrane</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="1 2">Belongs to the calycin superfamily. Lipocalin family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX36931.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_4300"/>
    <dbReference type="PRIDE" id="A9BLZ2"/>
    <dbReference type="EnsemblBacteria" id="ABX36931">
        <property type="protein sequence ID" value="ABX36931"/>
        <property type="gene ID" value="Daci_4300"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_4300"/>
    <dbReference type="eggNOG" id="COG3040">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_068449_3_0_4"/>
    <dbReference type="OMA" id="WYEVASY"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009279">
        <property type="term" value="C:cell outer membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008289">
        <property type="term" value="F:lipid binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.128.20">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012674">
        <property type="entry name" value="Calycin"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR022271">
        <property type="entry name" value="Lipocalin_ApoD"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002446">
        <property type="entry name" value="Lipocalin_bac"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR022272">
        <property type="entry name" value="Lipocalin_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000566">
        <property type="entry name" value="Lipocln_cytosolic_FA-bd_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08212">
        <property type="entry name" value="Lipocalin_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF036893">
        <property type="entry name" value="Lipocalin_ApoD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR01171">
        <property type="entry name" value="BCTLIPOCALIN"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50814">
        <property type="entry name" value="SSF50814"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00213">
        <property type="entry name" value="LIPOCALIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2" id="KW-0998">Cell outer membrane</keyword>
    <keyword evidence="2" id="KW-0446">Lipid-binding</keyword>
    <keyword evidence="2 3" id="KW-0449">Lipoprotein</keyword>
    <keyword evidence="2" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-0564">Palmitate</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="2">
        <location>
            <begin position="1"/>
            <end position="34"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5013433576" description="Outer membrane lipoprotein Blc" evidence="2">
        <location>
            <begin position="35"/>
            <end position="198"/>
        </location>
    </feature>
    <feature type="domain" description="Lipocln_cytosolic_FA-bd_dom" evidence="4">
        <location>
            <begin position="46"/>
            <end position="185"/>
        </location>
    </feature>
    <feature type="lipid moiety-binding region" description="N-palmitoyl cysteine" evidence="3">
        <location>
            <position position="31"/>
        </location>
    </feature>
    <feature type="lipid moiety-binding region" description="S-diacylglycerol cysteine" evidence="3">
        <location>
            <position position="31"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00006889"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="PIRNR" id="PIRNR036893"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="PIRSR" id="PIRSR036893-52"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="Pfam" id="PF08212"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="ABX36931.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="198" mass="21711" checksum="0605494451E6B157" modified="2008-01-15" version="1">MNFPAPRPVFTARRRTLLATALGAGLLASGCASMRPPGSVTPVSPFDLQRYQGLWYELARLDHGFERGMTDVTAEYTPQADGSVKVVNRGFSVPRGQWQRAVGKALFTGKPDTASLKVSFFGPFYGGYHVAALNPDYRWALVLGPDTQYCWILAREPKLPPQTLQSIVAKAAELGVDTGALIWVSHERHQEAHSQEAL</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="68" xmlns="http://uniprot.org/uniprot">
    <accession>A9BM05</accession>
    <name>A9BM05_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="9">Bifunctional chorismate mutase/prephenate dehydratase</fullName>
            <ecNumber evidence="8">4.2.1.51</ecNumber>
            <ecNumber evidence="7">5.4.99.5</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="18">Chorismate mutase-prephenate dehydratase</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="17">p-protein</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="23" type="ordered locus">Daci_4721</name>
    </gene>
    <organism evidence="23 24">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="23 24" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="24">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="24" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="24">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="3">Catalyzes the Claisen rearrangement of chorismate to prephenate and the decarboxylation/dehydration of prephenate to phenylpyruvate.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="2">
            <text>H(+) + prephenate = 3-phenylpyruvate + CO2 + H2O</text>
            <dbReference type="Rhea" id="RHEA:21648"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:16526"/>
            <dbReference type="ChEBI" id="CHEBI:18005"/>
            <dbReference type="ChEBI" id="CHEBI:29934"/>
            <dbReference type="EC" id="4.2.1.51"/>
        </reaction>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>chorismate = prephenate</text>
            <dbReference type="Rhea" id="RHEA:13897"/>
            <dbReference type="ChEBI" id="CHEBI:29748"/>
            <dbReference type="ChEBI" id="CHEBI:29934"/>
            <dbReference type="EC" id="5.4.99.5"/>
        </reaction>
    </comment>
    <comment type="pathway">
        <text evidence="5">Amino-acid biosynthesis; L-phenylalanine biosynthesis; phenylpyruvate from prephenate: step 1/1.</text>
    </comment>
    <comment type="pathway">
        <text evidence="6">Metabolic intermediate biosynthesis; prephenate biosynthesis; prephenate from chorismate: step 1/1.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="4">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <dbReference type="EC" id="4.2.1.51" evidence="8"/>
    <dbReference type="EC" id="5.4.99.5" evidence="7"/>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX37350.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012206520.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_4721"/>
    <dbReference type="PRIDE" id="A9BM05"/>
    <dbReference type="EnsemblBacteria" id="ABX37350">
        <property type="protein sequence ID" value="ABX37350"/>
        <property type="gene ID" value="Daci_4721"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_4721"/>
    <dbReference type="eggNOG" id="COG0077">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="eggNOG" id="COG1605">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_035008_0_1_4"/>
    <dbReference type="OMA" id="PLMIYRE"/>
    <dbReference type="UniPathway" id="UPA00120">
        <property type="reaction ID" value="UER00203"/>
    </dbReference>
    <dbReference type="UniPathway" id="UPA00121">
        <property type="reaction ID" value="UER00345"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004106">
        <property type="term" value="F:chorismate mutase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004664">
        <property type="term" value="F:prephenate dehydratase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046417">
        <property type="term" value="P:chorismate metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009094">
        <property type="term" value="P:L-phenylalanine biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniPathway"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.59.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045865">
        <property type="entry name" value="ACT-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002912">
        <property type="entry name" value="ACT_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008242">
        <property type="entry name" value="Chor_mutase/pphenate_deHydtase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036263">
        <property type="entry name" value="Chorismate_II_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036979">
        <property type="entry name" value="CM_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002701">
        <property type="entry name" value="CM_II_prokaryot"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010957">
        <property type="entry name" value="G/b/e-P-prot_chorismate_mutase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001086">
        <property type="entry name" value="Preph_deHydtase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018528">
        <property type="entry name" value="Preph_deHydtase_CS"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01842">
        <property type="entry name" value="ACT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01817">
        <property type="entry name" value="CM_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00800">
        <property type="entry name" value="PDT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF001500">
        <property type="entry name" value="Chor_mut_pdt_Ppr"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00830">
        <property type="entry name" value="CM_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48600">
        <property type="entry name" value="SSF48600"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55021">
        <property type="entry name" value="SSF55021"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01807">
        <property type="entry name" value="CM_P2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51671">
        <property type="entry name" value="ACT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51168">
        <property type="entry name" value="CHORISMATE_MUT_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00858">
        <property type="entry name" value="PREPHENATE_DEHYDR_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51171">
        <property type="entry name" value="PREPHENATE_DEHYDR_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="11" id="KW-0028">Amino-acid biosynthesis</keyword>
    <keyword evidence="12" id="KW-0057">Aromatic amino acid biosynthesis</keyword>
    <keyword evidence="10" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="14" id="KW-0413">Isomerase</keyword>
    <keyword evidence="15" id="KW-0456">Lyase</keyword>
    <keyword evidence="16" id="KW-0511">Multifunctional enzyme</keyword>
    <keyword evidence="13" id="KW-0584">Phenylalanine biosynthesis</keyword>
    <keyword evidence="24" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Chorismate mutase" evidence="20">
        <location>
            <begin position="5"/>
            <end position="95"/>
        </location>
    </feature>
    <feature type="domain" description="Prephenate dehydratase" evidence="21">
        <location>
            <begin position="95"/>
            <end position="270"/>
        </location>
    </feature>
    <feature type="domain" description="ACT" evidence="22">
        <location>
            <begin position="286"/>
            <end position="363"/>
        </location>
    </feature>
    <feature type="site" description="Essential for prephenate dehydratase activity" evidence="19">
        <location>
            <position position="263"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00000824"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00000913"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00002364"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00004496"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00004741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00004817"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00012404"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00013147"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00014401"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00022490"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="ARBA" id="ARBA00022605"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="12">
        <source>
            <dbReference type="ARBA" id="ARBA00023141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="13">
        <source>
            <dbReference type="ARBA" id="ARBA00023222"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="14">
        <source>
            <dbReference type="ARBA" id="ARBA00023235"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="15">
        <source>
            <dbReference type="ARBA" id="ARBA00023239"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="16">
        <source>
            <dbReference type="ARBA" id="ARBA00023268"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="17">
        <source>
            <dbReference type="ARBA" id="ARBA00031175"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="18">
        <source>
            <dbReference type="ARBA" id="ARBA00031520"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="19">
        <source>
            <dbReference type="PIRSR" id="PIRSR001500-2"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="20">
        <source>
            <dbReference type="PROSITE" id="PS51168"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="21">
        <source>
            <dbReference type="PROSITE" id="PS51171"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="22">
        <source>
            <dbReference type="PROSITE" id="PS51671"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="23">
        <source>
            <dbReference type="EMBL" id="ABX37350.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="24">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="366" mass="39814" checksum="DA6B1328DE7CC2C7" modified="2008-01-15" version="1">MSTTPQASPDLAHLRVQIDDIDQQLLDLLNRRARVAEQVGEVKKREGTPFFRPDRVAQVIQKIESANPGPLKNGHVSAIWREIMSACLALESPQRVAVLGPAGTFCEEAAIQYFGGAADLMYCNSFDEVFHATAAGSAQYGVVGVENSNEGVVTRSLDMFLHTPCHVVGEVSLLVRHNLLRSSNTTEGIEVVAAHPQALAQCQGWLAKHLPHAERRPVSSNAEGARLAALHPNIAGLASERAAQQFGLHVVAHAIQDDAYNRTRFAVICLPHTLATPSPSGQDCTSIIISVPNRPGAVHDLLVPLKKHGVSMTRFESRPARTGQWEYYFYIDLEGHPAQPNVASALEELRGLCAFYKVLGTYPVSK</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="49" xmlns="http://uniprot.org/uniprot">
    <accession>A9BM67</accession>
    <name>A9BM67_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Putative metal dependent phosphohydrolase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Daci_4783</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="2" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX37412.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012206582.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_4783"/>
    <dbReference type="PRIDE" id="A9BM67"/>
    <dbReference type="EnsemblBacteria" id="ABX37412">
        <property type="protein sequence ID" value="ABX37412"/>
        <property type="gene ID" value="Daci_4783"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_4783"/>
    <dbReference type="eggNOG" id="COG2206">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_000445_92_1_4"/>
    <dbReference type="OMA" id="YLMFQRA"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016787">
        <property type="term" value="F:hydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ABX37412.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="329" mass="36095" checksum="3F86FE6624AA6D13" modified="2008-01-15" version="1">MSRRPDDSYEDLLGLWSDLEAALSVLLSAPLQVQGFLVKLQQIDLWLQELIAHDSDAALYLMFQRACSSTVGYSASHALVCACLCHVLARELRLNETEHRTLVRGALTMNIGMNALQDELALQREPLTPAQQQAVQRHPLQSQALLARLFVNDAQWLELVARHHEAVPQQPLATLPPVQRLVRILGTVDRYAALISPRKSREGRSAAESLRALTQQQRYSDEVGFALVRAVGLCPPGTYVRLDNGDIAVVLRRGEPPQPPLVASVIGADGTSLYPPVIHEGEDGPRIRSALARAAITLELDPRTLAQLGVLAARGSQSLYRMVQMPGPV</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="51" xmlns="http://uniprot.org/uniprot">
    <accession>A9BMD1</accession>
    <name>A9BMD1_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Daci_4847</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="2" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX37476.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012206646.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_4847"/>
    <dbReference type="PRIDE" id="A9BMD1"/>
    <dbReference type="EnsemblBacteria" id="ABX37476">
        <property type="protein sequence ID" value="ABX37476"/>
        <property type="gene ID" value="Daci_4847"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_4847"/>
    <dbReference type="eggNOG" id="COG5094">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_033313_0_0_4"/>
    <dbReference type="OMA" id="GYWAEAF"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043746">
        <property type="entry name" value="DUF5691"/>
    </dbReference>
    <dbReference type="Pfam" id="PF18944">
        <property type="entry name" value="DUF5691"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ABX37476.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="587" mass="64537" checksum="AB9D42628682948E" modified="2008-01-15" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="61" xmlns="http://uniprot.org/uniprot">
    <accession>A9BME8</accession>
    <name>A9BME8_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="5">CDP-diacylglycerol--serine O-phosphatidyltransferase</fullName>
            <ecNumber evidence="4">2.7.8.8</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="6">Phosphatidylserine synthase</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="9" type="ordered locus">Daci_4864</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="9 10" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="10" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>a CDP-1,2-diacyl-sn-glycerol + L-serine = a 1,2-diacyl-sn-glycero-3-phospho-L-serine + CMP + H(+)</text>
            <dbReference type="Rhea" id="RHEA:16913"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:33384"/>
            <dbReference type="ChEBI" id="CHEBI:57262"/>
            <dbReference type="ChEBI" id="CHEBI:58332"/>
            <dbReference type="ChEBI" id="CHEBI:60377"/>
            <dbReference type="EC" id="2.7.8.8"/>
        </reaction>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="2">Membrane</location>
            <topology evidence="2">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="3 7">Belongs to the CDP-alcohol phosphatidyltransferase class-I family.</text>
    </comment>
    <dbReference type="EC" id="2.7.8.8" evidence="4"/>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX37493.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012206663.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_4864"/>
    <dbReference type="PRIDE" id="A9BME8"/>
    <dbReference type="EnsemblBacteria" id="ABX37493">
        <property type="protein sequence ID" value="ABX37493"/>
        <property type="gene ID" value="Daci_4864"/>
    </dbReference>
    <dbReference type="GeneID" id="60689208"/>
    <dbReference type="KEGG" id="dac:Daci_4864"/>
    <dbReference type="eggNOG" id="COG1183">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_049944_2_1_4"/>
    <dbReference type="OMA" id="IFFDFFD"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003882">
        <property type="term" value="F:CDP-diacylglycerol-serine O-phosphatidyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008654">
        <property type="term" value="P:phospholipid biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.120.1760">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004533">
        <property type="entry name" value="CDP-diaglyc--ser_O-PTrfase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000462">
        <property type="entry name" value="CDP-OH_P_trans"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043130">
        <property type="entry name" value="CDP-OH_PTrfase_TM_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01066">
        <property type="entry name" value="CDP-OH_P_transf"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00473">
        <property type="entry name" value="pssA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00379">
        <property type="entry name" value="CDP_ALCOHOL_P_TRANSF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="8" id="KW-0472">Membrane</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="7 9" id="KW-0808">Transferase</keyword>
    <keyword evidence="8" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="8" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="21"/>
            <end position="42"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="111"/>
            <end position="129"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="141"/>
            <end position="161"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="181"/>
            <end position="200"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="212"/>
            <end position="229"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="235"/>
            <end position="252"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00000287"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00010441"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00013174"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00017171"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00032361"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="RuleBase" id="RU003750"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="ABX37493.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="277" mass="30617" checksum="1454118D97613D80" modified="2008-01-15" version="1">MQNHNESNEIEGVVVRKRRKGIYILPNLFTLAALFGGFYAIVMAMNGRFELAAAGVFCAMVLDSLDGRVARMTNTQSAFGEQMDSLSDMVSFGAAPALIAYEWALKGIGRWGWIAAFVYCACAALRLARFNVNTGTVDKRWFQGLPSPAAAALVTGFIWLLDEAGLLRGQDAWLSWTQITWIMFFLTLYAGLTMVTNVPFYSFKDVHFKKSVPFAAIVLIALGIAIINIHPPIVLFGVFLLYGFSGYGVYAWRKAKGQRTSVISTSTDEPEERGLHK</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="52" xmlns="http://uniprot.org/uniprot">
    <accession>A9BMI3</accession>
    <name>A9BMI3_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Twin-arginine translocation pathway signal</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_4899</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX37528.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012206698.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_4899"/>
    <dbReference type="PRIDE" id="A9BMI3"/>
    <dbReference type="EnsemblBacteria" id="ABX37528">
        <property type="protein sequence ID" value="ABX37528"/>
        <property type="gene ID" value="Daci_4899"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_4899"/>
    <dbReference type="eggNOG" id="COG0715">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_052162_0_0_4"/>
    <dbReference type="OMA" id="PYTTFMA"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015168">
        <property type="entry name" value="SsuA/THI5"/>
    </dbReference>
    <dbReference type="Pfam" id="PF09084">
        <property type="entry name" value="NMT1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="NMT1" evidence="1">
        <location>
            <begin position="63"/>
            <end position="276"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF09084"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX37528.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="361" mass="38922" checksum="D8F6E422AFE452CE" modified="2008-01-15" version="1">MLCMRALGMIVLHCSKITTMSSHVLDRRTLLSLMGLGSLWSFPSLGSAELVTISVGGQGLLYYLPLVIAQQLGYFEAEGLTVRIDDYPGGSQSLQALESGAADVCAGAYEHTLVAQQRGSVLRAFVVQGRAPQIALGVSSRWMPRYQTLADLRGRRVGVSSLGASTARAVQLMLLGDGLEADLVQLVGVGSGPDAMEALRTGRVHALCHADPLMSVLEDKGAVRIVRDLRDLRSSAQLYGGSMPSGTLYATQAFLRKNPAKAQALSNAMVRSLKWLQTAAPMDVLRAVPAPYLLGSRRAYLSAFEHMRTTISPDGLMPDDGPATALRALVRLNPALARSGIDLERSFTNEFVRQSRQRFHT</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="36" xmlns="http://uniprot.org/uniprot">
    <accession>A9BMX4</accession>
    <name>A9BMX4_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Daci_5040</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="2" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX37669.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012206839.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_5040"/>
    <dbReference type="PRIDE" id="A9BMX4"/>
    <dbReference type="EnsemblBacteria" id="ABX37669">
        <property type="protein sequence ID" value="ABX37669"/>
        <property type="gene ID" value="Daci_5040"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_5040"/>
    <dbReference type="eggNOG" id="ENOG502ZB32">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_577062_0_0_4"/>
    <dbReference type="OMA" id="RWQDPAW"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ABX37669.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="490" mass="52228" checksum="22955F2962BDEBB2" modified="2008-01-15" version="1">MLTVSTLAAAALATGMGSAIVVQDQASLRAAPRDGAQQQASLWQGEVLEIRGERLDYLQVWDHKRERGGFIRAGDVRRVAMTEADAPALLAVLRFVQDTPGAEALGIGLAAAYLQAAPARTLAGAEGAQAFDALGGFADRLARRASAAAPGKASGATLSAHLDVANGYGLRFATYEVEGRMQVCYEGEFFRRVLAMPAADAPQRARAALALTRPECVDPDLPAHERARMHAWQADVLERVDVTGLPPYLRGRVQMRRASVWAALAFQQARKSMADPAVAASAARALAEFTGVSKSELPDEDQSAYNDAAMRVSAVRWALSPVAAAAPSAGARPTLLTEPGAAGETCVLLVDAQHGAKAPLLRRCTYGVVWAASASTNREGTAVALAVQPLEGWRELWVLRKTEGGWLADVLPPAATAPETGVAEWAGWVPGGQLMLVAREARGQGRYRKSFEVVRLDGLATERVTGDVSALPLFQRWQDPAWKRQSLSLR</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="91" xmlns="http://uniprot.org/uniprot">
    <accession>A9BN05</accession>
    <name>A9BN05_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="12">Alkyl hydroperoxide reductase, F subunit</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="12" type="ordered locus">Daci_5071</name>
    </gene>
    <organism evidence="12 13">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="12 13" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="13">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="13" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="13">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="8">
            <name>FAD</name>
            <dbReference type="ChEBI" id="CHEBI:57692"/>
        </cofactor>
        <text evidence="8">Binds 1 FAD per subunit.</text>
    </comment>
    <comment type="subunit">
        <text evidence="2">Homodimer.</text>
    </comment>
    <comment type="similarity">
        <text evidence="1">Belongs to the class-II pyridine nucleotide-disulfide oxidoreductase family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX37700.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012206870.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_5071"/>
    <dbReference type="PRIDE" id="A9BN05"/>
    <dbReference type="EnsemblBacteria" id="ABX37700">
        <property type="protein sequence ID" value="ABX37700"/>
        <property type="gene ID" value="Daci_5071"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_5071"/>
    <dbReference type="eggNOG" id="COG3634">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_031864_4_0_4"/>
    <dbReference type="OMA" id="VTVFEFM"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008785">
        <property type="term" value="F:alkyl hydroperoxide reductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0050660">
        <property type="term" value="F:flavin adenine dinucleotide binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051287">
        <property type="term" value="F:NAD binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000302">
        <property type="term" value="P:response to reactive oxygen species"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd03026">
        <property type="entry name" value="AhpF_NTD_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="CDD" id="cd02974">
        <property type="entry name" value="AhpF_NTD_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.50.50.60">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR044141">
        <property type="entry name" value="AhpF_NTD_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR044142">
        <property type="entry name" value="AhpF_NTD_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012081">
        <property type="entry name" value="Alkyl_hydroperoxide_Rdtase_suF"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036188">
        <property type="entry name" value="FAD/NAD-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023753">
        <property type="entry name" value="FAD/NAD-binding_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008255">
        <property type="entry name" value="Pyr_nucl-diS_OxRdtase_2_AS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012336">
        <property type="entry name" value="Thioredoxin-like_fold"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036249">
        <property type="entry name" value="Thioredoxin-like_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07992">
        <property type="entry name" value="Pyr_redox_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13192">
        <property type="entry name" value="Thioredoxin_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF000238">
        <property type="entry name" value="AhpF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51905">
        <property type="entry name" value="SSF51905"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52833">
        <property type="entry name" value="SSF52833"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR03140">
        <property type="entry name" value="AhpF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00573">
        <property type="entry name" value="PYRIDINE_REDOX_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="6 9" id="KW-1015">Disulfide bond</keyword>
    <keyword evidence="8" id="KW-0274">FAD</keyword>
    <keyword evidence="3" id="KW-0285">Flavoprotein</keyword>
    <keyword evidence="5" id="KW-0520">NAD</keyword>
    <keyword evidence="4" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="7 9" id="KW-0676">Redox-active center</keyword>
    <keyword evidence="13" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Thioredoxin-like_fold" evidence="11">
        <location>
            <begin position="126"/>
            <end position="192"/>
        </location>
    </feature>
    <feature type="domain" description="Pyr_redox_2" evidence="10">
        <location>
            <begin position="213"/>
            <end position="493"/>
        </location>
    </feature>
    <feature type="binding site" evidence="8">
        <location>
            <begin position="214"/>
            <end position="229"/>
        </location>
        <ligand>
            <name>FAD</name>
            <dbReference type="ChEBI" id="CHEBI:57692"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="8">
        <location>
            <begin position="478"/>
            <end position="488"/>
        </location>
        <ligand>
            <name>FAD</name>
            <dbReference type="ChEBI" id="CHEBI:57692"/>
        </ligand>
    </feature>
    <feature type="disulfide bond" description="Redox-active" evidence="9">
        <location>
            <begin position="345"/>
            <end position="348"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00009333"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00011738"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022630"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023002"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023027"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023157"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023284"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="PIRSR" id="PIRSR000238-1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="PIRSR" id="PIRSR000238-2"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="10">
        <source>
            <dbReference type="Pfam" id="PF07992"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="11">
        <source>
            <dbReference type="Pfam" id="PF13192"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="EMBL" id="ABX37700.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="13">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="518" mass="55380" checksum="E91C37B5B65FE231" modified="2008-01-15" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="96" xmlns="http://uniprot.org/uniprot">
    <accession>A9BNY4</accession>
    <name>A9BNY4_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="7">Lipoprotein-releasing system ATP-binding protein LolD</fullName>
            <ecNumber evidence="7">7.6.2.-</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="7" type="primary">lolD</name>
        <name evidence="9" type="ordered locus">Daci_5400</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="9 10" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="10" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="7">Part of the ABC transporter complex LolCDE involved in the translocation of mature outer membrane-directed lipoproteins, from the inner membrane to the periplasmic chaperone, LolA. Responsible for the formation of the LolA-lipoprotein complex in an ATP-dependent manner.</text>
    </comment>
    <comment type="subunit">
        <text evidence="7">The complex is composed of two ATP-binding proteins (LolD) and two transmembrane proteins (LolC and LolE).</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="7">Cell inner membrane</location>
            <topology evidence="7">Peripheral membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="7">Belongs to the ABC transporter superfamily. Lipoprotein translocase (TC 3.A.1.125) family.</text>
    </comment>
    <dbReference type="EC" id="7.6.2.-" evidence="7"/>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX38029.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012207198.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_5400"/>
    <dbReference type="PRIDE" id="A9BNY4"/>
    <dbReference type="EnsemblBacteria" id="ABX38029">
        <property type="protein sequence ID" value="ABX38029"/>
        <property type="gene ID" value="Daci_5400"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_5400"/>
    <dbReference type="eggNOG" id="COG1136">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_000604_1_22_4"/>
    <dbReference type="OMA" id="HDMSLAR"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0044873">
        <property type="term" value="P:lipoprotein localization to membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0042953">
        <property type="term" value="P:lipoprotein transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd03255">
        <property type="entry name" value="ABC_MJ0796_LolCDE_FtsE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003593">
        <property type="entry name" value="AAA+_ATPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003439">
        <property type="entry name" value="ABC_transporter-like_ATP-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017871">
        <property type="entry name" value="ABC_transporter-like_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015854">
        <property type="entry name" value="ABC_transpr_LolD"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011924">
        <property type="entry name" value="LolD_lipo_ATP-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017911">
        <property type="entry name" value="MacB_ATP-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR24220:SF654">
        <property type="entry name" value="PTHR24220:SF654"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00005">
        <property type="entry name" value="ABC_tran"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00382">
        <property type="entry name" value="AAA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR02211">
        <property type="entry name" value="LolD_lipo_ex"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00211">
        <property type="entry name" value="ABC_TRANSPORTER_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50893">
        <property type="entry name" value="ABC_TRANSPORTER_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3 6 7" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="7" id="KW-0997">Cell inner membrane</keyword>
    <keyword evidence="1 7" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="9" id="KW-0449">Lipoprotein</keyword>
    <keyword evidence="5 7" id="KW-0472">Membrane</keyword>
    <keyword evidence="2 6 7" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4 7" id="KW-1278">Translocase</keyword>
    <keyword evidence="7" id="KW-0813">Transport</keyword>
    <feature type="domain" description="ABC transporter" evidence="8">
        <location>
            <begin position="20"/>
            <end position="238"/>
        </location>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <begin position="56"/>
            <end position="63"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022967"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00434"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="RuleBase" id="RU367068"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="PROSITE" id="PS50893"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="ABX38029.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="238" mass="25762" checksum="BE038D4FCF880247" modified="2008-01-15" version="1">MNEVNVMPGFEVSQQGAVVLDARGLTKRFAEGRLNVQVLAGVDLQVRAGETLAIVGASGSGKSTLLHLLGGLDAPTSGSVTLKGEPLHELSAQKQGALRNRHLGFIYQFHHLLPEFSAQDNVAMPLRIRRDDRAECMERAARMLAAVGLGDRMLHRPAELSGGERQRVAIARALVTQPACVLADEPTGNLDRSTADTVFRLMLELARSHGTAFVMVTHDEQLAARCDRMVRLVQGQLA</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="76" xmlns="http://uniprot.org/uniprot">
    <accession>A9BP21</accession>
    <name>A9BP21_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="7">Binding-protein-dependent transport systems inner membrane component</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ordered locus">Daci_5437</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="8" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="5">Cell membrane</location>
            <topology evidence="5">Multi-pass membrane protein</topology>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="5">Belongs to the binding-protein-dependent transport system permease family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX38066.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_5437"/>
    <dbReference type="PRIDE" id="A9BP21"/>
    <dbReference type="EnsemblBacteria" id="ABX38066">
        <property type="protein sequence ID" value="ABX38066"/>
        <property type="gene ID" value="Daci_5437"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_5437"/>
    <dbReference type="eggNOG" id="COG0601">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_036879_0_1_4"/>
    <dbReference type="OMA" id="QLPWFTL"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0055085">
        <property type="term" value="P:transmembrane transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd06261">
        <property type="entry name" value="TM_PBP2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.3720.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045621">
        <property type="entry name" value="BPD_transp_1_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000515">
        <property type="entry name" value="MetI-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035906">
        <property type="entry name" value="MetI-like_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00528">
        <property type="entry name" value="BPD_transp_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF19300">
        <property type="entry name" value="BPD_transp_1_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF161098">
        <property type="entry name" value="SSF161098"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50928">
        <property type="entry name" value="ABC_TM1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4 5" id="KW-0472">Membrane</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 5" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="3 5" id="KW-1133">Transmembrane helix</keyword>
    <keyword evidence="5" id="KW-0813">Transport</keyword>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="44"/>
            <end position="65"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="130"/>
            <end position="155"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="167"/>
            <end position="196"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="216"/>
            <end position="239"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="260"/>
            <end position="280"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="286"/>
            <end position="304"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="325"/>
            <end position="346"/>
        </location>
    </feature>
    <feature type="domain" description="ABC transmembrane type-1" evidence="6">
        <location>
            <begin position="130"/>
            <end position="343"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="RuleBase" id="RU363032"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="PROSITE" id="PS50928"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="ABX38066.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="355" mass="38507" checksum="85CD9CAB0CDA3F12" modified="2008-01-15" version="1">MLRAWAVRSTIRALPRTTHPLRRRDRPPPCRDRLPMSIFLLKRLLMLAATLLGASAVVFGVLEVLPGNAAQTLMGPDAAPEAVHALAVQLGLDQPAWQRYLQWLQGLLHGDMGLSYAYSTPVSELVLERLAVTAPLAVMAMLITTVLALAAGIYAASRHNRWGDLGIMGLAQVGIAIPNFWFAILLILVFSVKLQWFSAGGFPGWSEADGGGPLQALQALLLPAISLAVVQAAILARITRSAVLEVLREDFVRTARAKGLSRRAVLWGHVLRNAMIPVLTVMGLQFAQLLAGTIVVENVFYLPGLGRLIFQSIANRDLIVVRNCVLLLAAMVVVINFIVDVLYAAIDPRIEASDV</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="77" xmlns="http://uniprot.org/uniprot">
    <accession>A9BPB1</accession>
    <name>A9BPB1_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="8">ABC transporter related</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="8" type="ordered locus">Daci_0028</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="9" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX32675.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012201968.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_0028"/>
    <dbReference type="PRIDE" id="A9BPB1"/>
    <dbReference type="EnsemblBacteria" id="ABX32675">
        <property type="protein sequence ID" value="ABX32675"/>
        <property type="gene ID" value="Daci_0028"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_0028"/>
    <dbReference type="eggNOG" id="COG0410">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_000604_1_2_4"/>
    <dbReference type="OMA" id="VTVFMVE"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003593">
        <property type="entry name" value="AAA+_ATPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003439">
        <property type="entry name" value="ABC_transporter-like_ATP-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017871">
        <property type="entry name" value="ABC_transporter-like_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00005">
        <property type="entry name" value="ABC_tran"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00382">
        <property type="entry name" value="AAA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00211">
        <property type="entry name" value="ABC_TRANSPORTER_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50893">
        <property type="entry name" value="ABC_TRANSPORTER_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3 6" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="1" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="5" id="KW-0472">Membrane</keyword>
    <keyword evidence="2 6" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4" id="KW-1278">Translocase</keyword>
    <feature type="domain" description="ABC transporter" evidence="7">
        <location>
            <begin position="10"/>
            <end position="249"/>
        </location>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <begin position="43"/>
            <end position="50"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022967"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00434"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="PROSITE" id="PS50893"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="ABX32675.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="272" mass="29708" checksum="B09D2C79629A2B7D" modified="2008-01-15" version="1">MTEQPTDKVLEINNIEVIYNKVVQALRGLSLAVPRGQIVALLGSNGAGKSTTLKAVSGLLALEDGLLASGSVRYNGQSTAQYAPQQLVRLGLSHVMEGRRVFEDLTVEENLVAATYALTGRNQVKPDFDLVYSYFPRLHERRKGLAGYLSGGEQQMLAIGRALIAQPQLMLLDEPSLGLAPKLVEDIFTIIARINAERGTSMLLVEQNATVALAVAHSGYIMENGKIVIDGPAERLAQDADVREFYLGMGGGGEAKSFRDLKHYKRRKRWLS</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="68" xmlns="http://uniprot.org/uniprot">
    <accession>A9BPF1</accession>
    <name>A9BPF1_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="6">Methyl-accepting chemotaxis sensory transducer</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ordered locus">Daci_0172</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="7" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the methyl-accepting chemotaxis (MCP) protein family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX32818.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012202111.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_0172"/>
    <dbReference type="PRIDE" id="A9BPF1"/>
    <dbReference type="EnsemblBacteria" id="ABX32818">
        <property type="protein sequence ID" value="ABX32818"/>
        <property type="gene ID" value="Daci_0172"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_0172"/>
    <dbReference type="eggNOG" id="COG0840">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_000445_107_16_4"/>
    <dbReference type="OMA" id="RSNEATH"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004888">
        <property type="term" value="F:transmembrane signaling receptor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006935">
        <property type="term" value="P:chemotaxis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0007165">
        <property type="term" value="P:signal transduction"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004090">
        <property type="entry name" value="Chemotax_Me-accpt_rcpt"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003660">
        <property type="entry name" value="HAMP_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR024478">
        <property type="entry name" value="HlyB_4HB_MCP"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004089">
        <property type="entry name" value="MCPsignal_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12729">
        <property type="entry name" value="4HB_MCP_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00672">
        <property type="entry name" value="HAMP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00015">
        <property type="entry name" value="MCPsignal"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00260">
        <property type="entry name" value="CHEMTRNSDUCR"/>
    </dbReference>
    <dbReference type="SMART" id="SM00304">
        <property type="entry name" value="HAMP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00283">
        <property type="entry name" value="MA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50111">
        <property type="entry name" value="CHEMOTAXIS_TRANSDUC_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50885">
        <property type="entry name" value="HAMP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-0472">Membrane</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0807">Transducer</keyword>
    <keyword evidence="3" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="3" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="3">
        <location>
            <begin position="12"/>
            <end position="33"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="3">
        <location>
            <begin position="191"/>
            <end position="212"/>
        </location>
    </feature>
    <feature type="domain" description="HAMP" evidence="5">
        <location>
            <begin position="213"/>
            <end position="265"/>
        </location>
    </feature>
    <feature type="domain" description="Methyl-accepting transducer" evidence="4">
        <location>
            <begin position="270"/>
            <end position="499"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00029447"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00284"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="PROSITE" id="PS50111"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="PROSITE" id="PS50885"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="ABX32818.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="550" mass="59071" checksum="DBB9983AA3F5E9D4" modified="2008-01-15" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="67" xmlns="http://uniprot.org/uniprot">
    <accession>A9BPK9</accession>
    <name>A9BPK9_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="7">Extracellular solute-binding protein family 3</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ordered locus">Daci_0230</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="8" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1 3">Belongs to the bacterial solute-binding protein 3 family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX32876.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012202169.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_0230"/>
    <dbReference type="PRIDE" id="A9BPK9"/>
    <dbReference type="EnsemblBacteria" id="ABX32876">
        <property type="protein sequence ID" value="ABX32876"/>
        <property type="gene ID" value="Daci_0230"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_0230"/>
    <dbReference type="eggNOG" id="COG0834">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_019602_18_4_4"/>
    <dbReference type="OMA" id="APFFNGV"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016020">
        <property type="term" value="C:membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015276">
        <property type="term" value="F:ligand-gated ion channel activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001320">
        <property type="entry name" value="Iontro_rcpt"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018313">
        <property type="entry name" value="SBP_3_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001638">
        <property type="entry name" value="Solute-binding_3/MltF_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006311">
        <property type="entry name" value="TAT_signal"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00497">
        <property type="entry name" value="SBP_bac_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00062">
        <property type="entry name" value="PBPb"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00079">
        <property type="entry name" value="PBPe"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01039">
        <property type="entry name" value="SBP_BACTERIAL_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51318">
        <property type="entry name" value="TAT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 4" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="4">
        <location>
            <begin position="1"/>
            <end position="32"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5002734956" evidence="4">
        <location>
            <begin position="33"/>
            <end position="268"/>
        </location>
    </feature>
    <feature type="domain" description="PBPb" evidence="5">
        <location>
            <begin position="43"/>
            <end position="263"/>
        </location>
    </feature>
    <feature type="domain" description="PBPe" evidence="6">
        <location>
            <begin position="43"/>
            <end position="262"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00010333"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022729"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="RuleBase" id="RU003744"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="SMART" id="SM00062"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="SMART" id="SM00079"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="ABX32876.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="268" mass="28330" checksum="58E5CDE66F5F81F5" modified="2008-01-15" version="1">MTSPLTTRRAFIRTALAAATLAAAGLGGAAHADMLANIQKAGVLRVAIPQDFPPFGSLGTDLKLQGYDIDMAALVAQELGVKVELVPVTSTNRIPFLTTGKADIVISSLGKNAERAKVIDFTQAYAPFPKSVYGPKDVSIKAPADLAGKTVGVTRGSTEDLALTQVAPASATIKRYEDNNATAQSYLTGQVQLVTLGNIVANAVNERTRLRQLDVKFAVEDTPCYIGVAKGEPALLQKVDAIITKLKADGRLTGLSQRWMKMPLPATL</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="54" xmlns="http://uniprot.org/uniprot">
    <accession>A9BPQ3</accession>
    <name>A9BPQ3_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ordered locus">Daci_0376</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="6" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX33022.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012202315.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_0376"/>
    <dbReference type="PRIDE" id="A9BPQ3"/>
    <dbReference type="EnsemblBacteria" id="ABX33022">
        <property type="protein sequence ID" value="ABX33022"/>
        <property type="gene ID" value="Daci_0376"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_0376"/>
    <dbReference type="eggNOG" id="COG3210">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_329211_0_0_4"/>
    <dbReference type="OMA" id="AVEANVF"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.40.10">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR044060">
        <property type="entry name" value="Bacterial_rp_domain"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR032109">
        <property type="entry name" value="Big_3_5"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013783">
        <property type="entry name" value="Ig-like_fold"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035986">
        <property type="entry name" value="PKD_dom_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF16640">
        <property type="entry name" value="Big_3_5"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF18998">
        <property type="entry name" value="Flg_new_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF49299">
        <property type="entry name" value="SSF49299"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0472">Membrane</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="2" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="826"/>
            <end position="847"/>
        </location>
    </feature>
    <feature type="domain" description="Flg_new_2" evidence="4">
        <location>
            <begin position="598"/>
            <end position="642"/>
        </location>
    </feature>
    <feature type="domain" description="Big_3_5" evidence="3">
        <location>
            <begin position="741"/>
            <end position="824"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="227"/>
            <end position="285"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="851"/>
            <end position="870"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF16640"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="Pfam" id="PF18998"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="ABX33022.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="870" mass="83043" checksum="C2B67E860A5D0D9D" modified="2008-01-15" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="78" xmlns="http://uniprot.org/uniprot">
    <accession>A9BPU1</accession>
    <name>A9BPU1_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="11 12">ATP synthase subunit a</fullName>
        </recommendedName>
        <alternativeName>
            <fullName evidence="11">ATP synthase F0 sector subunit a</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="11">F-ATPase subunit 6</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="11" type="primary">atpB</name>
        <name evidence="13" type="ordered locus">Daci_0414</name>
    </gene>
    <organism evidence="13 14">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="13 14" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="14">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="14" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="14">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="11 12">Key component of the proton channel; it plays a direct role in the translocation of protons across the membrane.</text>
    </comment>
    <comment type="subunit">
        <text evidence="11">F-type ATPases have 2 components, CF(1) - the catalytic core - and CF(0) - the membrane proton channel. CF(1) has five subunits: alpha(3), beta(3), gamma(1), delta(1), epsilon(1). CF(0) has three main subunits: a(1), b(2) and c(9-12). The alpha and beta chains form an alternating ring which encloses part of the gamma chain. CF(1) is attached to CF(0) by a central stalk formed by the gamma and epsilon chains, while a peripheral stalk is formed by the delta and b chains.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="11">Cell inner membrane</location>
            <topology evidence="11">Multi-pass membrane protein</topology>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="12">Cell membrane</location>
            <topology evidence="12">Multi-pass membrane protein</topology>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2 11 12">Belongs to the ATPase A chain family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX33060.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012202352.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_0414"/>
    <dbReference type="PRIDE" id="A9BPU1"/>
    <dbReference type="EnsemblBacteria" id="ABX33060">
        <property type="protein sequence ID" value="ABX33060"/>
        <property type="gene ID" value="Daci_0414"/>
    </dbReference>
    <dbReference type="GeneID" id="60690821"/>
    <dbReference type="KEGG" id="dac:Daci_0414"/>
    <dbReference type="eggNOG" id="COG0356">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_041018_1_0_4"/>
    <dbReference type="OMA" id="FTHAVRL"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0045263">
        <property type="term" value="C:proton-transporting ATP synthase complex, coupling factor F(o)"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046933">
        <property type="term" value="F:proton-transporting ATP synthase activity, rotational mechanism"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.120.220">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01393">
        <property type="entry name" value="ATP_synth_a_bact"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045082">
        <property type="entry name" value="ATP_syn_F0_a_bact/chloroplast"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000568">
        <property type="entry name" value="ATP_synth_F0_asu"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023011">
        <property type="entry name" value="ATP_synth_F0_asu_AS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035908">
        <property type="entry name" value="F0_ATP_A_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR42823">
        <property type="entry name" value="PTHR42823"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00119">
        <property type="entry name" value="ATP-synt_A"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF81336">
        <property type="entry name" value="SSF81336"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01131">
        <property type="entry name" value="ATP_synt_6_or_A"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00449">
        <property type="entry name" value="ATPASE_A"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="10 11" id="KW-0066">ATP synthesis</keyword>
    <keyword evidence="11" id="KW-0997">Cell inner membrane</keyword>
    <keyword evidence="11" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="4 11 12" id="KW-0138">CF(0)</keyword>
    <keyword evidence="6 11 12" id="KW-0375">Hydrogen ion transport</keyword>
    <keyword evidence="8 11 12" id="KW-0406">Ion transport</keyword>
    <keyword evidence="9 11" id="KW-0472">Membrane</keyword>
    <keyword evidence="14" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="5 11 12" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="7 11" id="KW-1133">Transmembrane helix</keyword>
    <keyword evidence="3 11 12" id="KW-0813">Transport</keyword>
    <feature type="transmembrane region" description="Helical" evidence="11">
        <location>
            <begin position="40"/>
            <end position="58"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="11">
        <location>
            <begin position="96"/>
            <end position="114"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="11">
        <location>
            <begin position="145"/>
            <end position="164"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="11">
        <location>
            <begin position="188"/>
            <end position="207"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="11">
        <location>
            <begin position="219"/>
            <end position="246"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="11">
        <location>
            <begin position="258"/>
            <end position="280"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00006810"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022448"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022547"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022781"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00023065"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00023310"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01393"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="12">
        <source>
            <dbReference type="RuleBase" id="RU000483"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="13">
        <source>
            <dbReference type="EMBL" id="ABX33060.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="14">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="287" mass="31137" checksum="6CC5B2FF2F4271A8" modified="2008-01-15" version="1">MAADAHAPTASEYIVHHLQHLQNIKQKSIIDFSVINLDSIVVSATLGVLSLFVLWLAARKATSGVPGRFQAAVELLVEMVDNQAKANIHNAQSRKFIAPLALTVFVWIFMMNAMDMLPVDLLPVLWQGVQGDSHAYLRVVPTADLSTTLGLSSAVLILCFFYSIKIKGMGGWAHELVTAPFGTSKNPVFALILGVINLAMQIIEYVAKTVSHGMRLFGNMYAGELVFCLIALMGGAAAMSLSGVLLPLGHIIAGSIWAIFHILIITLQAFIFMMLTLIYLGQAHEAH</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="73" xmlns="http://uniprot.org/uniprot">
    <accession>A9BQ51</accession>
    <name>A9BQ51_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="6">Flagellar secretion chaperone FliS</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="7" type="ordered locus">Daci_0620</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="8" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1 6">Cytoplasm</location>
            <location evidence="1 6">Cytosol</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2 6">Belongs to the FliS family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX33266.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012202552.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_0620"/>
    <dbReference type="PRIDE" id="A9BQ51"/>
    <dbReference type="EnsemblBacteria" id="ABX33266">
        <property type="protein sequence ID" value="ABX33266"/>
        <property type="gene ID" value="Daci_0620"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_0620"/>
    <dbReference type="eggNOG" id="COG1516">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_080373_1_0_4"/>
    <dbReference type="OMA" id="EFRDTWK"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005829">
        <property type="term" value="C:cytosol"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0044780">
        <property type="term" value="P:bacterial-type flagellum assembly"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd16098">
        <property type="entry name" value="FliS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003713">
        <property type="entry name" value="FliS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036584">
        <property type="entry name" value="FliS_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR34773">
        <property type="entry name" value="PTHR34773"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02561">
        <property type="entry name" value="FliS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF039090">
        <property type="entry name" value="Flis"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF101116">
        <property type="entry name" value="SSF101116"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00208">
        <property type="entry name" value="fliS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4 6" id="KW-1005">Bacterial flagellum biogenesis</keyword>
    <keyword evidence="7" id="KW-0966">Cell projection</keyword>
    <keyword evidence="5" id="KW-0143">Chaperone</keyword>
    <keyword evidence="7" id="KW-0969">Cilium</keyword>
    <keyword evidence="3 6" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="7" id="KW-0282">Flagellum</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004514"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00008787"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022490"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022795"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023186"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="PIRNR" id="PIRNR039090"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="ABX33266.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="137" mass="14428" checksum="99C42ABE3AE97C1D" modified="2008-01-15" version="1">MYTSLNRRAASAYAQVGVQSSVDGASPHQLIQLLFDALEKALNAAKGAMQRGDIGEKGVQIGKAVRILEEGLKASVNPDEGGELAQNLISVYDYSITQLTLANLRNDTALLQSAQDVLAPIAHGWRDIANAPAVAGT</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="47" xmlns="http://uniprot.org/uniprot">
    <accession>A9BQ92</accession>
    <name>A9BQ92_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Daci_0856</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="2" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX33502.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012202788.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_0856"/>
    <dbReference type="PRIDE" id="A9BQ92"/>
    <dbReference type="EnsemblBacteria" id="ABX33502">
        <property type="protein sequence ID" value="ABX33502"/>
        <property type="gene ID" value="Daci_0856"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_0856"/>
    <dbReference type="eggNOG" id="COG3313">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_1703475_0_0_4"/>
    <dbReference type="OMA" id="AAINHWR"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010710">
        <property type="entry name" value="DUF1289"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR022191">
        <property type="entry name" value="DUF3717"/>
    </dbReference>
    <dbReference type="Pfam" id="PF06945">
        <property type="entry name" value="DUF1289"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12512">
        <property type="entry name" value="DUF3717"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ABX33502.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="143" mass="16397" checksum="67CBAE1CB9CFDFB6" modified="2008-01-15" version="1">MTALHITDIEAAINYWRERHPSPDGVLLQPEVRALAEVYALMIFWHESEVQVEGFPSHAMAAWLAWYDTTPDTPCIAICSTSQGDERCKGCGRSFDEVQLWTAMEPAQKRMVWRRITAEGDSWRFTRYAERAAERTDTSRDSG</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="61" xmlns="http://uniprot.org/uniprot">
    <accession>A9BQE6</accession>
    <name>A9BQE6_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Fumarate lyase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_0910</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX33556.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012202842.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_0910"/>
    <dbReference type="PRIDE" id="A9BQE6"/>
    <dbReference type="EnsemblBacteria" id="ABX33556">
        <property type="protein sequence ID" value="ABX33556"/>
        <property type="gene ID" value="Daci_0910"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_0910"/>
    <dbReference type="eggNOG" id="COG0015">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_030949_3_2_4"/>
    <dbReference type="OMA" id="HTQRDEW"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016829">
        <property type="term" value="F:lyase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000362">
        <property type="entry name" value="Fumarate_lyase_fam"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR022761">
        <property type="entry name" value="Fumarate_lyase_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008948">
        <property type="entry name" value="L-Aspartase-like"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00206">
        <property type="entry name" value="Lyase_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00149">
        <property type="entry name" value="FUMRATELYASE"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48557">
        <property type="entry name" value="SSF48557"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0456">Lyase</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Lyase_1" evidence="1">
        <location>
            <begin position="22"/>
            <end position="284"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF00206"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX33556.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="458" mass="48594" checksum="44BBA654AACA23BF" modified="2008-01-15" version="1">MSLVKDYLGPADSGHWFADARWLDALLRFESALAQAQADCGLVPRPAAEAIARACAQAPLTCEGVVEQARASGALGLAVVRPLQQWLQAHAPEGLPWLHWGATTQDAVDTAQALLTQQALQALLAELDALQSALQALARTHAATPMLARSLLQPAQITSFGFKCAQSAAAVGRSIEQFERLATAALCVQLGGAVGNGAVLGSHRAEVEQALARRLGLSACGRSWHTQRDDWMRLAMEAAVCGGSLAKLAKDWSLMAQYEVGEVSEAPRGSTSSAMPHKRNPVHLMQAVAQAQAVPQFASLLLGCMAQAHERALGEWQAEVAHWPDLWRHVHGAAAALRQAAQSLQVHPQRMLGHVRGLHGLVFSEACVHAMAPWTGKPEALAAVELLAPQALEQGRELRLLLAEWAAPRLDAAALQALQDALARACDPARAVQASHDACLALLAAPQTHANAHAHSHA</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="44" xmlns="http://uniprot.org/uniprot">
    <accession>A9BQM7</accession>
    <name>A9BQM7_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Daci_0082</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="2" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX32729.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012202022.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_0082"/>
    <dbReference type="PRIDE" id="A9BQM7"/>
    <dbReference type="EnsemblBacteria" id="ABX32729">
        <property type="protein sequence ID" value="ABX32729"/>
        <property type="gene ID" value="Daci_0082"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_0082"/>
    <dbReference type="eggNOG" id="COG2253">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_067323_0_0_4"/>
    <dbReference type="OMA" id="FILKGAM"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014942">
        <property type="entry name" value="AbiEii"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08843">
        <property type="entry name" value="AbiEii"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ABX32729.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="281" mass="31131" checksum="3C267D849CC54EB9" modified="2008-01-15" version="1">MSRDIAASIRARLKQCADARRQDFNLTLTHYGLERLLYRLSISPHADSYLLKGALLFAIWYEQPHRPTRDADLLGFGLDDVDSAVSAFREICGIAVDDGIAFDAASVRGTTIRKEAGYGEVRIDLRATLDGARITLQVDIGFGDAVTPSPQAIRYPVLLDGLPAPQLRSYPKYTVVAEKLHAICLLGMANTRMKDYFDLWVLMTEGTLDPAELRRAMKATFERRQLALPAGLPAGLSDGFSSDAAKQAQWAAFLKKNRLEALELAPVVARLREEFQQCGIF</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="83" xmlns="http://uniprot.org/uniprot">
    <accession>A9BR16</accession>
    <name>A9BR16_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Transcriptional regulator, LysR family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Daci_0325</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="4" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the LysR transcriptional regulatory family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX32971.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012202264.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_0325"/>
    <dbReference type="PRIDE" id="A9BR16"/>
    <dbReference type="EnsemblBacteria" id="ABX32971">
        <property type="protein sequence ID" value="ABX32971"/>
        <property type="gene ID" value="Daci_0325"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_0325"/>
    <dbReference type="eggNOG" id="COG0583">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_039613_16_2_4"/>
    <dbReference type="OMA" id="MLSKQYV"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003700">
        <property type="term" value="F:DNA-binding transcription factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005119">
        <property type="entry name" value="LysR_subst-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000847">
        <property type="entry name" value="Tscrpt_reg_HTH_LysR"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036390">
        <property type="entry name" value="WH_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00126">
        <property type="entry name" value="HTH_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03466">
        <property type="entry name" value="LysR_substrate"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46785">
        <property type="entry name" value="SSF46785"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50931">
        <property type="entry name" value="HTH_LYSR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HTH lysR-type" evidence="2">
        <location>
            <begin position="10"/>
            <end position="67"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00009437"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS50931"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ABX32971.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="303" mass="32969" checksum="583B8EAF5904D3BC" modified="2008-01-15" version="1">MTPTSTAMHTLLHRAQTFLAVVDFGSYTRAADFLGISKAMASLHVKSLEEALSVALLVRNTRSIALTETGREFYDEFKGIVRDVGSAFDNAMHSGNRIAGRLRISTTSEYGEKYILPLIPAFLERYPGISVAYDVNSSLSDLVAEKLDLVVRLGHLADSSFKSRRLAGYDIVLVASAAFLRSHPVRQPEDLADLPWIANSNLAHPTAWTLRTAGGQGVDVVGRAAHQSNSSTAIRALARSSLGVAVLPAWFVEDDLAGGVLQRVLPDHALPPQPISVVFPDSSHLPRKTRVFIDFLCEHLGRD</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="47" xmlns="http://uniprot.org/uniprot">
    <accession>A9BR47</accession>
    <name>A9BR47_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Daci_0459</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="4" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX33105.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012202391.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_0459"/>
    <dbReference type="PRIDE" id="A9BR47"/>
    <dbReference type="EnsemblBacteria" id="ABX33105">
        <property type="protein sequence ID" value="ABX33105"/>
        <property type="gene ID" value="Daci_0459"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_0459"/>
    <dbReference type="eggNOG" id="COG5419">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_1080626_0_0_4"/>
    <dbReference type="OMA" id="SPGHCSR"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018754">
        <property type="entry name" value="DUF2285"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045465">
        <property type="entry name" value="DUF6499"/>
    </dbReference>
    <dbReference type="Pfam" id="PF10074">
        <property type="entry name" value="DUF2285"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF20109">
        <property type="entry name" value="DUF6499"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="DUF6499" evidence="2">
        <location>
            <begin position="8"/>
            <end position="63"/>
        </location>
    </feature>
    <feature type="domain" description="DUF2285" evidence="1">
        <location>
            <begin position="137"/>
            <end position="241"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF10074"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF20109"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ABX33105.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="257" mass="28293" checksum="DEBEB3D461278F03" modified="2008-01-15" version="1">MVSPHHFPHWYPTAAYLYVLRLDALALACEYLRRHPDYRLDWLHRHRRPQAAQHAAHRWGLRLLEDPALDARDAHPAWLPGHAGVVQLYPDADPPQNATAFAFWRIPGHKQLIHDGKRLVLIARSPGHCLRFALAPGLEDGMAVAYAHHGGAAAPARGHAPGAALANARPRPSHSALLELHTLQALDATLAGASLRDVAEGLFGVDAAAGWYSDGGLRSKVRRLTRRGDALMRGGYRRLAQLAPLEKGRFEGHAKRP</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="43" xmlns="http://uniprot.org/uniprot">
    <accession>A9BR58</accession>
    <name>A9BR58_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Daci_0470</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="2" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX33116.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012202402.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_0470"/>
    <dbReference type="PRIDE" id="A9BR58"/>
    <dbReference type="EnsemblBacteria" id="ABX33116">
        <property type="protein sequence ID" value="ABX33116"/>
        <property type="gene ID" value="Daci_0470"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_0470"/>
    <dbReference type="eggNOG" id="COG3616">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_119528_1_1_4"/>
    <dbReference type="OMA" id="GEPEIGW"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR021341">
        <property type="entry name" value="DUF2958"/>
    </dbReference>
    <dbReference type="Pfam" id="PF11171">
        <property type="entry name" value="DUF2958"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ABX33116.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="116" mass="12704" checksum="FEFCB558D3661C46" modified="2008-01-15" version="1">MNYAFITDEQRALLLANGRASLENPDFDPAPVVKLFTPDAGATWLLTEIDPDDHDHVFGLCDLGLGMPEIGWVSLGELAAVRGRLGLPIERDLSFRAEKRLSAYARDARLAGRIAV</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-05-25" version="53" xmlns="http://uniprot.org/uniprot">
    <accession>A9BR73</accession>
    <name>A9BR73_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="4">Mercuric transport protein MerT</fullName>
        </recommendedName>
        <alternativeName>
            <fullName evidence="14">Mercury ion transport protein</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="16" type="ordered locus">Daci_0485</name>
    </gene>
    <organism evidence="16 17">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="16 17" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="17">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="17" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="17">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="2">Cell inner membrane</location>
            <topology evidence="2">Multi-pass membrane protein</topology>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="3">Belongs to the MerT family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX33131.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012202417.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_0485"/>
    <dbReference type="EnsemblBacteria" id="ABX33131">
        <property type="protein sequence ID" value="ABX33131"/>
        <property type="gene ID" value="Daci_0485"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_0485"/>
    <dbReference type="eggNOG" id="COG2608">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_151729_0_0_4"/>
    <dbReference type="OMA" id="MEPERVN"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015097">
        <property type="term" value="F:mercury ion transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003457">
        <property type="entry name" value="Transprt_MerT"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02411">
        <property type="entry name" value="MerT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="8" id="KW-0997">Cell inner membrane</keyword>
    <keyword evidence="7" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="13 15" id="KW-0472">Membrane</keyword>
    <keyword evidence="6" id="KW-0475">Mercuric resistance</keyword>
    <keyword evidence="11" id="KW-0476">Mercury</keyword>
    <keyword evidence="10" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="17" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="9 15" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="12 15" id="KW-1133">Transmembrane helix</keyword>
    <keyword evidence="5" id="KW-0813">Transport</keyword>
    <feature type="transmembrane region" description="Helical" evidence="15">
        <location>
            <begin position="12"/>
            <end position="41"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="15">
        <location>
            <begin position="53"/>
            <end position="70"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="15">
        <location>
            <begin position="90"/>
            <end position="112"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00004429"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00008224"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00017053"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022448"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022466"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00022519"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="ARBA" id="ARBA00022914"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="12">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="13">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="14">
        <source>
            <dbReference type="ARBA" id="ARBA00030934"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="15">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="16">
        <source>
            <dbReference type="EMBL" id="ABX33131.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="17">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="116" mass="12492" checksum="7F873666CCDBFCDE" modified="2008-01-15" version="1">MSEPKSGRGALAAGGLAAILASACCLGPLILVLLGFSGAWIANLAVLEPYRPIFIGAALMALFFAWRSIFRPVHACKPDEVCAVPRVRTAYKIIFWIVVALVLIALAFPYVLPLFY</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="67" xmlns="http://uniprot.org/uniprot">
    <accession>A9BRC5</accession>
    <name>A9BRC5_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Phospholipid/glycerol acyltransferase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Daci_0537</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="4" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX33183.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012202469.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_0537"/>
    <dbReference type="PRIDE" id="A9BRC5"/>
    <dbReference type="EnsemblBacteria" id="ABX33183">
        <property type="protein sequence ID" value="ABX33183"/>
        <property type="gene ID" value="Daci_0537"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_0537"/>
    <dbReference type="eggNOG" id="COG0204">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_029603_0_0_4"/>
    <dbReference type="OMA" id="GNGMVEM"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016746">
        <property type="term" value="F:acyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0022857">
        <property type="term" value="F:transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.1250.20">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011701">
        <property type="entry name" value="MFS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036259">
        <property type="entry name" value="MFS_trans_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002123">
        <property type="entry name" value="Plipid/glycerol_acylTrfase"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01553">
        <property type="entry name" value="Acyltransferase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07690">
        <property type="entry name" value="MFS_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00563">
        <property type="entry name" value="PlsC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF103473">
        <property type="entry name" value="SSF103473"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-0012">Acyltransferase</keyword>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0808">Transferase</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="71"/>
            <end position="91"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="111"/>
            <end position="128"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="177"/>
            <end position="194"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="252"/>
            <end position="275"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="287"/>
            <end position="307"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="319"/>
            <end position="341"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="361"/>
            <end position="383"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="404"/>
            <end position="422"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="428"/>
            <end position="451"/>
        </location>
    </feature>
    <feature type="domain" description="PlsC" evidence="2">
        <location>
            <begin position="479"/>
            <end position="600"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="SMART" id="SM00563"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ABX33183.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="654" mass="71214" checksum="410C0DB12F6FEAEC" modified="2008-01-15" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-05-25" version="65" xmlns="http://uniprot.org/uniprot">
    <accession>A9BRH9</accession>
    <name>A9BRH9_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Short-chain dehydrogenase/reductase SDR</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Daci_0694</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="2" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX33340.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012202626.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_0694"/>
    <dbReference type="EnsemblBacteria" id="ABX33340">
        <property type="protein sequence ID" value="ABX33340"/>
        <property type="gene ID" value="Daci_0694"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_0694"/>
    <dbReference type="eggNOG" id="COG1028">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_010194_42_0_4"/>
    <dbReference type="OMA" id="WAQRTIG"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016491">
        <property type="term" value="F:oxidoreductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036291">
        <property type="entry name" value="NAD(P)-bd_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020904">
        <property type="entry name" value="Sc_DH/Rdtase_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002347">
        <property type="entry name" value="SDR_fam"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00106">
        <property type="entry name" value="adh_short"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00081">
        <property type="entry name" value="GDHRDH"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51735">
        <property type="entry name" value="SSF51735"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00061">
        <property type="entry name" value="ADH_SHORT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ABX33340.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="259" mass="27177" checksum="327EB676FCE4440B" modified="2008-01-15" version="1">MQLQKNMTALVTGGVSGLGEASAQALLERGLNVVVVDLNEDRGAAMVDAARQRHGSRLRFVKADVADADQMAAAIAAAEDFGEFRALVHCAGVGGPLRLVEKDGSPGSLDKYTGIVRVNLIGTFNTLRLAAASMARNEPLQGERGACVLTASVAGYEGQIGQIPYASAKAGIIGMTIVAARDLATRMIRVCTIAPGLFDTPILAKLPDNIRQSLAASVPNPARLGHPSEYALTALHILENPMLNGETIRLDGAIRMSPR</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="78" xmlns="http://uniprot.org/uniprot">
    <accession>A9BRI0</accession>
    <name>A9BRI0_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="6">Acetyl-CoA acetyltransferase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ordered locus">Daci_0695</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="7" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1 3">Belongs to the thiolase-like superfamily. Thiolase family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX33341.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012202627.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_0695"/>
    <dbReference type="PRIDE" id="A9BRI0"/>
    <dbReference type="EnsemblBacteria" id="ABX33341">
        <property type="protein sequence ID" value="ABX33341"/>
        <property type="gene ID" value="Daci_0695"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_0695"/>
    <dbReference type="eggNOG" id="COG0183">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_031026_2_3_4"/>
    <dbReference type="OMA" id="PSMEARY"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016747">
        <property type="term" value="F:acyltransferase activity, transferring groups other than amino-acyl groups"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd00751">
        <property type="entry name" value="thiolase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.47.10">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002155">
        <property type="entry name" value="Thiolase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016039">
        <property type="entry name" value="Thiolase-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020617">
        <property type="entry name" value="Thiolase_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020613">
        <property type="entry name" value="Thiolase_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020616">
        <property type="entry name" value="Thiolase_N"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02803">
        <property type="entry name" value="Thiolase_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00108">
        <property type="entry name" value="Thiolase_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF000429">
        <property type="entry name" value="Ac-CoA_Ac_transf"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53901">
        <property type="entry name" value="SSF53901"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01930">
        <property type="entry name" value="AcCoA-C-Actrans"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00737">
        <property type="entry name" value="THIOLASE_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-0012">Acyltransferase</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 6" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Thiolase_N" evidence="4">
        <location>
            <begin position="5"/>
            <end position="262"/>
        </location>
    </feature>
    <feature type="domain" description="Thiolase_C" evidence="5">
        <location>
            <begin position="270"/>
            <end position="391"/>
        </location>
    </feature>
    <feature type="active site" description="Acyl-thioester intermediate" evidence="2">
        <location>
            <position position="91"/>
        </location>
    </feature>
    <feature type="active site" description="Proton acceptor" evidence="2">
        <location>
            <position position="348"/>
        </location>
    </feature>
    <feature type="active site" description="Proton acceptor" evidence="2">
        <location>
            <position position="378"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00010982"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="PIRSR" id="PIRSR000429-1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="RuleBase" id="RU003557"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="Pfam" id="PF00108"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="Pfam" id="PF02803"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="ABX33341.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="392" mass="41590" checksum="4E460EC5AA98E582" modified="2008-01-15" version="1">MNTPVIVDAIRSPMARAKPDGALAQLHPVDLLSQVLEQLVQRNRIDPGAVDDVITGCVSQAGEQAGTPGRLAWLAAGLPAHVPSTTIDRKCGSSQQAVHFAVQAIMSGTQDMVIACGVESMSRVPMGSSRMGQNTTGARFDARFAPGLVGQGVSADLVAARWGLGREELDAYAARSHQRAHAAQSAGHFEREIVGITTPAGLVTADETIRPGTTVQKLGALKAVFQNDELSARFPQIRWHTTAGNASQMTDGASAMLLMSEKRAQQLGLRPRARFVALDVVGDDPLYMLTAPIPATRRVLAKAGMRLEQMDHCEINEAFASVPLAWQKELGADPERLNPRGGAIALGHPLGASGIRLMTTMLHALEDSGARYGLQSMCEAGGMANATIIERL</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="56" xmlns="http://uniprot.org/uniprot">
    <accession>A9BRP1</accession>
    <name>A9BRP1_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ordered locus">Daci_0962</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="5" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Periplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the UPF0065 (bug) family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX33608.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012202894.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_0962"/>
    <dbReference type="PRIDE" id="A9BRP1"/>
    <dbReference type="EnsemblBacteria" id="ABX33608">
        <property type="protein sequence ID" value="ABX33608"/>
        <property type="gene ID" value="Daci_0962"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_0962"/>
    <dbReference type="eggNOG" id="COG3181">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_045683_0_0_4"/>
    <dbReference type="OMA" id="SGSPMHI"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0042597">
        <property type="term" value="C:periplasmic space"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.190.150">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005064">
        <property type="entry name" value="BUG"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR042100">
        <property type="entry name" value="Bug_dom1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006311">
        <property type="entry name" value="TAT_signal"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR42928">
        <property type="entry name" value="PTHR42928"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03401">
        <property type="entry name" value="TctC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF017082">
        <property type="entry name" value="YflP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51318">
        <property type="entry name" value="TAT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="3">
        <location>
            <begin position="1"/>
            <end position="26"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5002732450" evidence="3">
        <location>
            <begin position="27"/>
            <end position="325"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004418"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00006987"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="ABX33608.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="325" mass="33985" checksum="DBB18D747E3BAB38" modified="2008-01-15" version="1">MNKTRRQVSLAAAFLAAATLSGTAMAQAYPAKPITIIVAYPAGGDTDAMARLYAEKLSTRLGQPVLVDNRPGASGTIGSVHVAKAAPDGYTMLLAPNTFAIAQFVLKTASGSSYDVLHGFTPIVQTSVQPMFVATNQASGIKDMKTLIAQGKRDGLTYASPGSGSPMHILGEMFNRAAGTRIAHIPYKGVAPAVNDLIGGHVPTTFMTWGPIAPYIGGKVTALAVADSQRSALAPNVPTLAELGVKDVEVSAWQGLFGPKGMSPETVKLLNTHLNEILKMPDVVSKMATFGALPAGGDPARLEKTNAADFNRFGKLIKDLDIRAD</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="56" xmlns="http://uniprot.org/uniprot">
    <accession>A9BRU7</accession>
    <name>A9BRU7_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Glyoxalase-like_dom domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_1018</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX33664.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012202950.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_1018"/>
    <dbReference type="PRIDE" id="A9BRU7"/>
    <dbReference type="EnsemblBacteria" id="ABX33664">
        <property type="protein sequence ID" value="ABX33664"/>
        <property type="gene ID" value="Daci_1018"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_1018"/>
    <dbReference type="eggNOG" id="COG0346">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_058475_1_1_4"/>
    <dbReference type="OMA" id="YLEIIAW"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.10.180.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029068">
        <property type="entry name" value="Glyas_Bleomycin-R_OHBP_Dase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025870">
        <property type="entry name" value="Glyoxalase-like_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13468">
        <property type="entry name" value="Glyoxalase_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54593">
        <property type="entry name" value="SSF54593"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Glyoxalase-like_dom" evidence="1">
        <location>
            <begin position="5"/>
            <end position="181"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF13468"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX33664.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="263" mass="28002" checksum="DA3349104AF991DE" modified="2008-01-15" version="1">MALPLDHIVIAVQDLEAAVADYRALGFQVAIGGRHPGRTSHNALVVFADGAYLEIIAWTAPAPEERWYRTLRDHGEGLVDFALLPQSTAQALAEARGRGLDTLVGPVDGGRVRPDGAQLLWQTARHATPDLPFLCGDVTPRALRVPEGSVREHPNGALGVASLTVAVHDLDASLDRYRALLGPGLPLQRLDNQGARLALPGFDLLLQGAQALAASDALRQRLATRGEGPCALTLRQRPGAPAQPLDLAASHGVDMRWHGVNTL</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="47" xmlns="http://uniprot.org/uniprot">
    <accession>A9BRZ3</accession>
    <name>A9BRZ3_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_0757</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX33403.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012202689.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_0757"/>
    <dbReference type="PRIDE" id="A9BRZ3"/>
    <dbReference type="EnsemblBacteria" id="ABX33403">
        <property type="protein sequence ID" value="ABX33403"/>
        <property type="gene ID" value="Daci_0757"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_0757"/>
    <dbReference type="eggNOG" id="ENOG502ZB55">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_141506_0_0_4"/>
    <dbReference type="OMA" id="PSEVFWR"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="149"/>
            <end position="169"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX33403.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="169" mass="18100" checksum="93C3FE60B7F0DC12" modified="2008-01-15" version="1">MSAQTIPLHLLKAQLELQLHLSRLLQESGQQWLEHAARNGPERIAETGSEIEGVQQTSSWQELATLPAQAFWRHAHLRMGHAQALAQTAMASQITLAQGVQQAVHDWQQQVAATLGNSTQGAADTAVPWSDLLARWTSAVQSVAQPAHAAQQPIAAAAAETARDATAQG</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="68" xmlns="http://uniprot.org/uniprot">
    <accession>A9BS16</accession>
    <name>A9BS16_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Gamma-glutamyltransferase</fullName>
            <ecNumber evidence="1">2.3.2.2</ecNumber>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Daci_0780</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="2" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EC" id="2.3.2.2" evidence="1"/>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX33426.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_0780"/>
    <dbReference type="MEROPS" id="T03.025"/>
    <dbReference type="PRIDE" id="A9BS16"/>
    <dbReference type="EnsemblBacteria" id="ABX33426">
        <property type="protein sequence ID" value="ABX33426"/>
        <property type="gene ID" value="Daci_0780"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_0780"/>
    <dbReference type="eggNOG" id="COG0405">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_014813_3_2_4"/>
    <dbReference type="OMA" id="GCKLAMA"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0102953">
        <property type="term" value="F:hypoglycin A gamma-glutamyl transpeptidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0103068">
        <property type="term" value="F:leukotriene C4 gamma-glutamyl transferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.246.130">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.60.20.40">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043138">
        <property type="entry name" value="GGT_lsub_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043137">
        <property type="entry name" value="GGT_ssub"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029055">
        <property type="entry name" value="Ntn_hydrolases_N"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56235">
        <property type="entry name" value="SSF56235"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0012">Acyltransferase</keyword>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0808">Transferase</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ABX33426.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="568" mass="59617" checksum="1B62920E74D5AA3D" modified="2008-01-15" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="75" xmlns="http://uniprot.org/uniprot">
    <accession>A9BSG4</accession>
    <name>A9BSG4_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="11">ABC transporter related</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="11" type="ordered locus">Daci_1133</name>
    </gene>
    <organism evidence="11 12">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="11 12" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="12">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="12" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="12">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX33778.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012203064.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_1133"/>
    <dbReference type="EnsemblBacteria" id="ABX33778">
        <property type="protein sequence ID" value="ABX33778"/>
        <property type="gene ID" value="Daci_1133"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_1133"/>
    <dbReference type="eggNOG" id="COG3842">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_000604_1_22_4"/>
    <dbReference type="OMA" id="LIHEPKM"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015408">
        <property type="term" value="F:ABC-type ferric iron transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0055072">
        <property type="term" value="P:iron ion homeostasis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd03259">
        <property type="entry name" value="ABC_Carb_Solutes_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003593">
        <property type="entry name" value="AAA+_ATPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003439">
        <property type="entry name" value="ABC_transporter-like_ATP-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017871">
        <property type="entry name" value="ABC_transporter-like_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015853">
        <property type="entry name" value="ABC_transpr_FbpC"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR030287">
        <property type="entry name" value="FbpC"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR24220:SF675">
        <property type="entry name" value="PTHR24220:SF675"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00005">
        <property type="entry name" value="ABC_tran"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00382">
        <property type="entry name" value="AAA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00211">
        <property type="entry name" value="ABC_TRANSPORTER_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50893">
        <property type="entry name" value="ABC_TRANSPORTER_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="5 9" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="2" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="3" id="KW-0406">Ion transport</keyword>
    <keyword evidence="7" id="KW-0408">Iron</keyword>
    <keyword evidence="3" id="KW-0410">Iron transport</keyword>
    <keyword evidence="8" id="KW-0472">Membrane</keyword>
    <keyword evidence="4 9" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="12" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="6" id="KW-1278">Translocase</keyword>
    <keyword evidence="1" id="KW-0813">Transport</keyword>
    <feature type="domain" description="ABC transporter" evidence="10">
        <location>
            <begin position="16"/>
            <end position="250"/>
        </location>
    </feature>
    <feature type="binding site" evidence="9">
        <location>
            <begin position="48"/>
            <end position="55"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022448"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022496"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022967"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023004"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00434"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="10">
        <source>
            <dbReference type="PROSITE" id="PS50893"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="EMBL" id="ABX33778.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="259" mass="27535" checksum="0274679BC5BA0EDB" modified="2008-01-15" version="1">MTSIESSTAAAQGVAVQARQLKRIHGERAVLQDISLQIAPGEVLALLGPSGCGKTTLLKILAGLEQPSRGEVWMGGQCAASASQSLPPERRELGLVLQDHALWPHMSLQANVAFALEMRGLPRAQIHERVQQTLGLVGLQGMGERLPGSLSGGQQQRAALACAVVERPRLVLLDEPLSGLDGNLRERLCEEIPRLLRSLGCTAVYATQDRQQALAVADRVVVMEHGRILQPGSARDQAPAPVPCGADRRPMAGHLCSAA</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="78" xmlns="http://uniprot.org/uniprot">
    <accession>A9BSH1</accession>
    <name>A9BSH1_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="6">Binding-protein-dependent transport systems inner membrane component</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ordered locus">Daci_1140</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="7" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="4">Cell membrane</location>
            <topology evidence="4">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="4">Belongs to the binding-protein-dependent transport system permease family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX33785.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012203071.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_1140"/>
    <dbReference type="PRIDE" id="A9BSH1"/>
    <dbReference type="EnsemblBacteria" id="ABX33785">
        <property type="protein sequence ID" value="ABX33785"/>
        <property type="gene ID" value="Daci_1140"/>
    </dbReference>
    <dbReference type="GeneID" id="60685710"/>
    <dbReference type="KEGG" id="dac:Daci_1140"/>
    <dbReference type="eggNOG" id="COG0600">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_046113_2_1_4"/>
    <dbReference type="OMA" id="MTGWAHR"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0055085">
        <property type="term" value="P:transmembrane transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd06261">
        <property type="entry name" value="TM_PBP2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.3720.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000515">
        <property type="entry name" value="MetI-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035906">
        <property type="entry name" value="MetI-like_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00528">
        <property type="entry name" value="BPD_transp_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF161098">
        <property type="entry name" value="SSF161098"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50928">
        <property type="entry name" value="ABC_TM1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3 4" id="KW-0472">Membrane</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1 4" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="2 4" id="KW-1133">Transmembrane helix</keyword>
    <keyword evidence="4" id="KW-0813">Transport</keyword>
    <feature type="transmembrane region" description="Helical" evidence="4">
        <location>
            <begin position="61"/>
            <end position="83"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="4">
        <location>
            <begin position="175"/>
            <end position="194"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="4">
        <location>
            <begin position="214"/>
            <end position="234"/>
        </location>
    </feature>
    <feature type="domain" description="ABC transmembrane type-1" evidence="5">
        <location>
            <begin position="57"/>
            <end position="237"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="RuleBase" id="RU363032"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="PROSITE" id="PS50928"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="ABX33785.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="255" mass="27713" checksum="E7938289738DADB2" modified="2008-01-15" version="1">MHKKYAERWAPWVLLLAVILLWQVICSAFEVSEFIFPSPWAIGRQLAEFSGIIAAHAWRTYWVTMAGFGIAIVVGVLLGFLIGSSRLAYAAFYPLMTAFNALPKAAFVPILVVWFGIGAGPAILTAFLISFFPIMVNIATGLATLEPELEDVLRVLGARRWDVLIKVGLPRSMPYFYGSLKVAITLAFVGTTVSEMTAANEGIGYLLVSAGSSMQMGLAFAGLIVVGAMAMVMYELFSAIEKRTTGWARRGSQGE</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="52" xmlns="http://uniprot.org/uniprot">
    <accession>A9BSI3</accession>
    <name>A9BSI3_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ordered locus">Daci_1152</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="5" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Periplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the UPF0065 (bug) family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX33797.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012203083.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_1152"/>
    <dbReference type="PRIDE" id="A9BSI3"/>
    <dbReference type="EnsemblBacteria" id="ABX33797">
        <property type="protein sequence ID" value="ABX33797"/>
        <property type="gene ID" value="Daci_1152"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_1152"/>
    <dbReference type="eggNOG" id="COG3181">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_045683_0_0_4"/>
    <dbReference type="OMA" id="PMTLIGK"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0042597">
        <property type="term" value="C:periplasmic space"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.190.150">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005064">
        <property type="entry name" value="BUG"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR042100">
        <property type="entry name" value="Bug_dom1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR42928">
        <property type="entry name" value="PTHR42928"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03401">
        <property type="entry name" value="TctC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF017082">
        <property type="entry name" value="YflP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="3">
        <location>
            <begin position="1"/>
            <end position="22"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5002733043" evidence="3">
        <location>
            <begin position="23"/>
            <end position="329"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004418"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00006987"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="ABX33797.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="329" mass="34802" checksum="08E5E008EF9EE66A" modified="2008-01-15" version="1">MKALFKIAAIALAAGAALGAHAQDYPAAGKTITLIVPFTAGGPTDKVARDLAESMRKQLNNATIVVDNADGAGSTIGTAKAARARPDGYTLLINHIGMSTIPSLYRKLSFNVLNDFEYAGIINDVPMTLIGRPSLPAKNFAEVKDWIGKNQGKVNLANAGIGSASHLCGLMLQASMKTEMTPVPYKGAAPAIADLIGNQVDLLCDQTTNTTGQITAKKVQAYAVTTPKRLTMPALKDLPTLAEVGVPDFQVTIWHGLYAPKGTPADIVKKVNEAMKAALKDPEFIKRQEALGAVIASDGRIEPEGHKKFVQAEIEKWGKVIKAAGTYAD</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="97" xmlns="http://uniprot.org/uniprot">
    <accession>A9BSJ5</accession>
    <name>A9BSJ5_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="7">Phthalate 4,5-dioxygenase</fullName>
            <ecNumber evidence="7">1.14.12.7</ecNumber>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ordered locus">Daci_1356</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="8" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EC" id="1.14.12.7" evidence="7"/>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX34000.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012203286.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_1356"/>
    <dbReference type="PRIDE" id="A9BSJ5"/>
    <dbReference type="EnsemblBacteria" id="ABX34000">
        <property type="protein sequence ID" value="ABX34000"/>
        <property type="gene ID" value="Daci_1356"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_1356"/>
    <dbReference type="eggNOG" id="COG1018">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_003827_17_0_4"/>
    <dbReference type="OMA" id="CGTCETD"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051537">
        <property type="term" value="F:2 iron, 2 sulfur cluster binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0018620">
        <property type="term" value="F:phthalate 4,5-dioxygenase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="CDD" id="cd00207">
        <property type="entry name" value="fer2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.10.20.30">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.80">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036010">
        <property type="entry name" value="2Fe-2S_ferredoxin-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001041">
        <property type="entry name" value="2Fe-2S_ferredoxin-type"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006058">
        <property type="entry name" value="2Fe2S_fd_BS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012675">
        <property type="entry name" value="Beta-grasp_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017927">
        <property type="entry name" value="FAD-bd_FR_type"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR039261">
        <property type="entry name" value="FNR_nucleotide-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001433">
        <property type="entry name" value="OxRdtase_FAD/NAD-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000951">
        <property type="entry name" value="Ph_dOase_redase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017938">
        <property type="entry name" value="Riboflavin_synthase-like_b-brl"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00111">
        <property type="entry name" value="Fer2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00175">
        <property type="entry name" value="NAD_binding_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00409">
        <property type="entry name" value="PHDIOXRDTASE"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52343">
        <property type="entry name" value="SSF52343"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54292">
        <property type="entry name" value="SSF54292"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF63380">
        <property type="entry name" value="SSF63380"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00197">
        <property type="entry name" value="2FE2S_FER_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51085">
        <property type="entry name" value="2FE2S_FER_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51384">
        <property type="entry name" value="FAD_FR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0001">2Fe-2S</keyword>
    <keyword evidence="7" id="KW-0223">Dioxygenase</keyword>
    <keyword evidence="3" id="KW-0408">Iron</keyword>
    <keyword evidence="4" id="KW-0411">Iron-sulfur</keyword>
    <keyword evidence="2" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="7" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="FAD-binding FR-type" evidence="6">
        <location>
            <begin position="4"/>
            <end position="106"/>
        </location>
    </feature>
    <feature type="domain" description="2Fe-2S ferredoxin-type" evidence="5">
        <location>
            <begin position="235"/>
            <end position="320"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022714"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023004"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023014"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="PROSITE" id="PS51085"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="PROSITE" id="PS51384"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="ABX34000.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="320" mass="34366" checksum="407A09A73B78F12F" modified="2008-01-15" version="1">MQANSILQVRVARKCAEAQDICSLELVPLDGQRLPAFTAGSHIDLHLPGGLVRQYSLCNDPQDTGRYVVGVLREAASRGGSAAVHEQVQEGQQIAIGAPRNHFALHADGPARHLLLAGGIGITPVLAMARHLAREGADFELHYCARSRERMAFTALLQSMPWADRVHLHVDGEGALDMAQLLGAPQAGLHLYVCGPRGFMDAALGHARASGWSEDSLHYEFFAGEAVQREGDAGFEIEIASTGQVVRVAPEQTVVQALAGIGVEVQTSCEQGVCGTCLTRVLSGEPEHRDMYLTEDEQAACDQFLPCCSRAKSARLVLDL</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2021-06-02" version="40" xmlns="http://uniprot.org/uniprot">
    <accession>A9BSJ7</accession>
    <name>A9BSJ7_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_1358</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX34002.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012203288.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="ABX34002">
        <property type="protein sequence ID" value="ABX34002"/>
        <property type="gene ID" value="Daci_1358"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_1358"/>
    <dbReference type="eggNOG" id="ENOG50303H9">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_145285_0_0_4"/>
    <dbReference type="OMA" id="WYRFFGA"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="51"/>
            <end position="75"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="87"/>
            <end position="105"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="117"/>
            <end position="139"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX34002.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="141" mass="14607" checksum="6A8A97C9CF922C54" modified="2008-01-15" version="1">MKGLQLLALAAALFDTAAALAHFACIVWGGRGLRLMGAGERMARMAEAGHWYPPLVSAAIGVVLSLLAGYALAGAGLLGPLPFMRTVLAGAGLVLVARAVAYPWLKPRFPDNSDRFWHVSSAICLVMGLLHLAAAAGMAQG</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="81" xmlns="http://uniprot.org/uniprot">
    <accession>A9BSK7</accession>
    <name>A9BSK7_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="6">Transcriptional regulator, RpiR family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ordered locus">Daci_1368</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="7" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX34012.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012203298.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_1368"/>
    <dbReference type="PRIDE" id="A9BSK7"/>
    <dbReference type="EnsemblBacteria" id="ABX34012">
        <property type="protein sequence ID" value="ABX34012"/>
        <property type="gene ID" value="Daci_1368"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_1368"/>
    <dbReference type="eggNOG" id="COG1737">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_055769_1_2_4"/>
    <dbReference type="OMA" id="QWINQID"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0097367">
        <property type="term" value="F:carbohydrate derivative binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003700">
        <property type="term" value="F:DNA-binding transcription factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016301">
        <property type="term" value="F:kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006096">
        <property type="term" value="P:glycolytic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd05013">
        <property type="entry name" value="SIS_RpiR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009057">
        <property type="entry name" value="Homeobox-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000281">
        <property type="entry name" value="HTH_RpiR"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035472">
        <property type="entry name" value="RpiR-like_SIS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001347">
        <property type="entry name" value="SIS_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR046348">
        <property type="entry name" value="SIS_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
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        <property type="entry name" value="SIS"/>
        <property type="match status" value="1"/>
    </dbReference>
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        <property type="entry name" value="SSF46689"/>
        <property type="match status" value="1"/>
    </dbReference>
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        <property type="entry name" value="SSF53697"/>
        <property type="match status" value="1"/>
    </dbReference>
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        <property type="entry name" value="HTH_RPIR"/>
        <property type="match status" value="1"/>
    </dbReference>
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        <property type="entry name" value="SIS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0324">Glycolysis</keyword>
    <keyword evidence="1" id="KW-0418">Kinase</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="HTH rpiR-type" evidence="4">
        <location>
            <begin position="10"/>
            <end position="86"/>
        </location>
    </feature>
    <feature type="domain" description="SIS" evidence="5">
        <location>
            <begin position="134"/>
            <end position="272"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="3">
        <location>
            <begin position="295"/>
            <end position="314"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022777"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023152"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="PROSITE" id="PS51071"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="PROSITE" id="PS51464"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="ABX34012.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="314" mass="33762" checksum="B1EA4A681D68FB1B" modified="2008-01-15" version="1">MKSPLQKATLLLPQRLAQQGADLTASELTVAQTLGSNYPHALLESATALAAHTGTSASTVVRLFAKLGYASYAEAQREARGEVTALLQTAAQRAPVLLGAQRSLSECVDDALLHDQHNIQATREGLDMAAFEAMARKLAQGEGRVFVLAQLNSSPVSAWLALHLNMCRPGVQELDAGAIAPADQLLWIGPSDTLLAFSVSQYSRGTFEIAQRFADAGAQVLALTDSPAAPLATVAHHWLQVRTANASPFHSYTAAFYLCNALVSAVAQLRHKDVSEALARRDALWKEFNHQLIRTPEPRTAARRNPGRSRAAKD</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="56" xmlns="http://uniprot.org/uniprot">
    <accession>A9BSP5</accession>
    <name>A9BSP5_DELAS</name>
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        <submittedName>
            <fullName evidence="2">Class II aldolase/adducin family protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_1406</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
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        <lineage>
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            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
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        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
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                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX34050.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012203336.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_1406"/>
    <dbReference type="PRIDE" id="A9BSP5"/>
    <dbReference type="EnsemblBacteria" id="ABX34050">
        <property type="protein sequence ID" value="ABX34050"/>
        <property type="gene ID" value="Daci_1406"/>
    </dbReference>
    <dbReference type="GeneID" id="60685965"/>
    <dbReference type="KEGG" id="dac:Daci_1406"/>
    <dbReference type="eggNOG" id="COG0235">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_006033_0_0_4"/>
    <dbReference type="OMA" id="GREAHDW"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.225.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001303">
        <property type="entry name" value="Aldolase_II/adducin_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036409">
        <property type="entry name" value="Aldolase_II/adducin_N_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00596">
        <property type="entry name" value="Aldolase_II"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM01007">
        <property type="entry name" value="Aldolase_II"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53639">
        <property type="entry name" value="SSF53639"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Aldolase_II" evidence="1">
        <location>
            <begin position="23"/>
            <end position="203"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="SMART" id="SM01007"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX34050.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="256" mass="28460" checksum="010A13358B252CE6" modified="2008-01-15" version="1">MSNDTTMSEVRRQVTAEEWQTRIELAAAYRLVAHFGWDDLIFTHISARVPGQPDQFLINPYGMLFDEITASSLVKVDHEGRPLMETEYDVNPAGFVIHSAIHDGRPEVQCVLHTHTRYGVAVSAQKEGLLPISQQSIFPLARLAYHDYEGVALRDDEKPRLVDDLGASNFLILRNHGLLTCGRNVAEAVLAMYTLESACRIQILAQSGGGELTRIPQDIIADAVNQSRQVTKGKGAGLAWPGLLRRLDRIDPSYKD</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="73" xmlns="http://uniprot.org/uniprot">
    <accession>A9BSU5</accession>
    <name>A9BSU5_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="9">Cytochrome c class I</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="9" type="ordered locus">Daci_1662</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="9 10" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="10" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="PTM">
        <text evidence="4">Binds 2 heme c groups covalently per subunit.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX34305.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012203590.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_1662"/>
    <dbReference type="PRIDE" id="A9BSU5"/>
    <dbReference type="EnsemblBacteria" id="ABX34305">
        <property type="protein sequence ID" value="ABX34305"/>
        <property type="gene ID" value="Daci_1662"/>
    </dbReference>
    <dbReference type="GeneID" id="60686151"/>
    <dbReference type="KEGG" id="dac:Daci_1662"/>
    <dbReference type="eggNOG" id="COG2863">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_076280_3_1_4"/>
    <dbReference type="OMA" id="QHADYLF"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0042597">
        <property type="term" value="C:periplasmic space"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009055">
        <property type="term" value="F:electron transfer activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0020037">
        <property type="term" value="F:heme binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005506">
        <property type="term" value="F:iron ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.760.10">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009056">
        <property type="entry name" value="Cyt_c-like_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036909">
        <property type="entry name" value="Cyt_c-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR024167">
        <property type="entry name" value="Cytochrome_c4-like"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00034">
        <property type="entry name" value="Cytochrom_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13442">
        <property type="entry name" value="Cytochrome_CBB3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF000005">
        <property type="entry name" value="Cytochrome_c4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46626">
        <property type="entry name" value="SSF46626"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51007">
        <property type="entry name" value="CYTC"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1 4 6" id="KW-0349">Heme</keyword>
    <keyword evidence="3 5 6" id="KW-0408">Iron</keyword>
    <keyword evidence="2 5 6" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="7" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="7">
        <location>
            <begin position="1"/>
            <end position="22"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5002735055" evidence="7">
        <location>
            <begin position="23"/>
            <end position="224"/>
        </location>
    </feature>
    <feature type="domain" description="Cytochrome c" evidence="8">
        <location>
            <begin position="27"/>
            <end position="109"/>
        </location>
    </feature>
    <feature type="domain" description="Cytochrome c" evidence="8">
        <location>
            <begin position="120"/>
            <end position="206"/>
        </location>
    </feature>
    <feature type="binding site" description="covalent" evidence="4">
        <location>
            <position position="39"/>
        </location>
        <ligand>
            <name>heme</name>
            <dbReference type="ChEBI" id="CHEBI:30413"/>
            <label>1</label>
        </ligand>
    </feature>
    <feature type="binding site" description="covalent" evidence="4">
        <location>
            <position position="42"/>
        </location>
        <ligand>
            <name>heme</name>
            <dbReference type="ChEBI" id="CHEBI:30413"/>
            <label>1</label>
        </ligand>
    </feature>
    <feature type="binding site" description="axial binding residue" evidence="5">
        <location>
            <position position="43"/>
        </location>
        <ligand>
            <name>heme c</name>
            <dbReference type="ChEBI" id="CHEBI:61717"/>
            <label>1</label>
        </ligand>
        <ligandPart>
            <name>Fe</name>
            <dbReference type="ChEBI" id="CHEBI:18248"/>
        </ligandPart>
    </feature>
    <feature type="binding site" description="axial binding residue" evidence="5">
        <location>
            <position position="86"/>
        </location>
        <ligand>
            <name>heme c</name>
            <dbReference type="ChEBI" id="CHEBI:61717"/>
            <label>1</label>
        </ligand>
        <ligandPart>
            <name>Fe</name>
            <dbReference type="ChEBI" id="CHEBI:18248"/>
        </ligandPart>
    </feature>
    <feature type="binding site" description="covalent" evidence="4">
        <location>
            <position position="134"/>
        </location>
        <ligand>
            <name>heme c</name>
            <dbReference type="ChEBI" id="CHEBI:61717"/>
            <label>2</label>
        </ligand>
    </feature>
    <feature type="binding site" description="covalent" evidence="4">
        <location>
            <position position="137"/>
        </location>
        <ligand>
            <name>heme c</name>
            <dbReference type="ChEBI" id="CHEBI:61717"/>
            <label>2</label>
        </ligand>
    </feature>
    <feature type="binding site" description="axial binding residue" evidence="5">
        <location>
            <position position="138"/>
        </location>
        <ligand>
            <name>heme c</name>
            <dbReference type="ChEBI" id="CHEBI:61717"/>
            <label>2</label>
        </ligand>
        <ligandPart>
            <name>Fe</name>
            <dbReference type="ChEBI" id="CHEBI:18248"/>
        </ligandPart>
    </feature>
    <feature type="binding site" description="axial binding residue" evidence="5">
        <location>
            <position position="183"/>
        </location>
        <ligand>
            <name>heme c</name>
            <dbReference type="ChEBI" id="CHEBI:61717"/>
            <label>2</label>
        </ligand>
        <ligandPart>
            <name>Fe</name>
            <dbReference type="ChEBI" id="CHEBI:18248"/>
        </ligandPart>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022617"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023004"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="PIRSR" id="PIRSR000005-1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="PIRSR" id="PIRSR000005-2"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00433"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="PROSITE" id="PS51007"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="ABX34305.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="224" mass="23772" checksum="EE4CBB08FBDC11DE" modified="2008-01-15" version="1">MIKTLTTVLALTVASVTPVAQAQQSKGDAKAGEGKIAMCIGCHGIQGYQASFPEVYKVPKISGQGAPYIVAALQAYQKGERKHPTMRGIADPLTEQDMADVAAYYAEHGVAKAADAKVREPSTQVAALLQKGACVSCHGQGFSKPIDPSYPKVAGQYADYLYSALKSYKTEGNPHIGRSNGVMAGIAKQFTNSELKALANYIGSLDGELQTLPQPHFRLGQKSQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="63" xmlns="http://uniprot.org/uniprot">
    <accession>A9BT90</accession>
    <name>A9BT90_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_2015</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX34655.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012203940.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_2015"/>
    <dbReference type="PRIDE" id="A9BT90"/>
    <dbReference type="EnsemblBacteria" id="ABX34655">
        <property type="protein sequence ID" value="ABX34655"/>
        <property type="gene ID" value="Daci_2015"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_2015"/>
    <dbReference type="eggNOG" id="COG3127">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_009475_0_0_4"/>
    <dbReference type="OMA" id="LIMWRLS"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038766">
        <property type="entry name" value="Membrane_comp_ABC_pdt"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30287">
        <property type="entry name" value="PTHR30287"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="25"/>
            <end position="44"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="271"/>
            <end position="295"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="316"/>
            <end position="341"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="361"/>
            <end position="385"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="406"/>
            <end position="425"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="431"/>
            <end position="454"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="482"/>
            <end position="504"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="721"/>
            <end position="740"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="770"/>
            <end position="793"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="805"/>
            <end position="827"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX34655.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="844" mass="89740" checksum="3E7BA8CE0639F9BB" modified="2008-01-15" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="76" xmlns="http://uniprot.org/uniprot">
    <accession>A9BTB9</accession>
    <name>A9BTB9_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Short-chain dehydrogenase/reductase SDR</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_2044</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the short-chain dehydrogenases/reductases (SDR) family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX34684.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012203969.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_2044"/>
    <dbReference type="PRIDE" id="A9BTB9"/>
    <dbReference type="EnsemblBacteria" id="ABX34684">
        <property type="protein sequence ID" value="ABX34684"/>
        <property type="gene ID" value="Daci_2044"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_2044"/>
    <dbReference type="eggNOG" id="COG0300">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_010194_2_1_4"/>
    <dbReference type="OMA" id="TWATPRW"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036291">
        <property type="entry name" value="NAD(P)-bd_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002347">
        <property type="entry name" value="SDR_fam"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00106">
        <property type="entry name" value="adh_short"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00081">
        <property type="entry name" value="GDHRDH"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00080">
        <property type="entry name" value="SDRFAMILY"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51735">
        <property type="entry name" value="SSF51735"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="RuleBase" id="RU000363"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX34684.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="260" mass="27920" checksum="66C664447FBF1AD6" modified="2008-01-15" version="1">MKTPFDFSQKTVLVTGASMGIGEVFARELARRGAKVVLIARSRDRLEKLASELPGAEFLVEDLATPGAARRVFDAVSARGLLPDLLVNNAGFGTHGRFDELALDMQRETIDLNVGALVELTHLCLPALEQRQGGVINIASTAAFQPVPYMAVYAATKAFVLSFSEALWAEYRPRGVRVLALCPGATDTAFFARAGEAASFGKKASSEDVVRLGLKAFDDNRASVVHGCANYLTALGARVATREFMARFTARVMRPAAQPA</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="67" xmlns="http://uniprot.org/uniprot">
    <accession>A9BTG4</accession>
    <name>A9BTG4_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Cyclopropane-fatty-acyl-phospholipid synthase</fullName>
            <ecNumber evidence="3">2.1.1.79</ecNumber>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Daci_2293</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="4" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the CFA/CMAS family.</text>
    </comment>
    <dbReference type="EC" id="2.1.1.79" evidence="3"/>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX34932.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012204215.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_2293"/>
    <dbReference type="PRIDE" id="A9BTG4"/>
    <dbReference type="EnsemblBacteria" id="ABX34932">
        <property type="protein sequence ID" value="ABX34932"/>
        <property type="gene ID" value="Daci_2293"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_2293"/>
    <dbReference type="eggNOG" id="COG2230">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_026434_6_2_4"/>
    <dbReference type="OMA" id="WKPGELG"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008825">
        <property type="term" value="F:cyclopropane-fatty-acyl-phospholipid synthase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008610">
        <property type="term" value="P:lipid biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0032259">
        <property type="term" value="P:methylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.150">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003333">
        <property type="entry name" value="Mycolic_cyclopropane_synthase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029063">
        <property type="entry name" value="SAM-dependent_MTases_sf"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF003085">
        <property type="entry name" value="CMAS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53335">
        <property type="entry name" value="SSF53335"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-0489">Methyltransferase</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0808">Transferase</keyword>
    <feature type="active site" evidence="2">
        <location>
            <position position="375"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00010815"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="PIRSR" id="PIRSR003085-1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ABX34932.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="414" mass="47165" checksum="E25FD2AD2958F1D5" modified="2008-01-15" version="1">MFWDKKLRRWAEAVRARADLPARLVLWNGEQFDFGRFEQPRVTLTVRSASALPLLLDPSLDHLGQAYVKGQIDIDGRLPDIIDFGYALARRMSKTQGAGKGPGRLALAARAARRFRHSRSTDRESIQYHYDVSDDFYRLWLDEGMVYSCAYFENGDEDLATAQRKKLDHILTKIRLQPGQRLLDIGCGWGALVLRAAQHFGAHCVGVTLSRNQFEAATERVRAAGLADRIEIRLQDYRDVQGRFDRITSVGMFEHVGRRNLPMYFAHMRELLVDDGLALNHGITSTDADVGATALGGGAFIDRYVFPDGELPHLSLALEAMQRGGLEVLDVEGLRRHYVRTLQLWLERFEACVPEIRALVEEERFRIWRVYLAGCAYAFEHDDVSIFQVVCRRAGQGAASLPWSRRYMYERTLS</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2021-06-02" version="43" xmlns="http://uniprot.org/uniprot">
    <accession>A9BTZ7</accession>
    <name>A9BTZ7_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_3074</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX35712.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012204918.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_3074"/>
    <dbReference type="EnsemblBacteria" id="ABX35712">
        <property type="protein sequence ID" value="ABX35712"/>
        <property type="gene ID" value="Daci_3074"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_3074"/>
    <dbReference type="eggNOG" id="ENOG50331SB">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_159285_4_0_4"/>
    <dbReference type="OMA" id="CWGFIAL"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="6"/>
            <end position="31"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="43"/>
            <end position="62"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="68"/>
            <end position="86"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX35712.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="92" mass="9877" checksum="3AE24271F9D98052" modified="2008-01-15" version="1">MKTILVRIAAAIFGGYAFTWGFIALGVVLMFAAGMEFHDAEHLGYILGLLVFLTVFLWAFAAQSLPRVWAVLAGGGIVMTGCASLLQQMLLP</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-01-19" version="63" xmlns="http://uniprot.org/uniprot">
    <accession>A9BU66</accession>
    <name>A9BU66_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="6">Intradiol ring-cleavage dioxygenase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ordered locus">Daci_3143</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="7" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the intradiol ring-cleavage dioxygenase family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX35781.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012204982.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_3143"/>
    <dbReference type="EnsemblBacteria" id="ABX35781">
        <property type="protein sequence ID" value="ABX35781"/>
        <property type="gene ID" value="Daci_3143"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_3143"/>
    <dbReference type="eggNOG" id="COG3485">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_027719_2_0_4"/>
    <dbReference type="OMA" id="CYDGRWP"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008199">
        <property type="term" value="F:ferric iron binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016702">
        <property type="term" value="F:oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006725">
        <property type="term" value="P:cellular aromatic compound metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.130.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000627">
        <property type="entry name" value="Intradiol_dOase_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015889">
        <property type="entry name" value="Intradiol_dOase_core"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00775">
        <property type="entry name" value="Dioxygenase_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF49482">
        <property type="entry name" value="SSF49482"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2 6" id="KW-0223">Dioxygenase</keyword>
    <keyword evidence="3" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="INTRADIOL_DIOXYGENAS" evidence="5">
        <location>
            <begin position="138"/>
            <end position="214"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="4">
        <location>
            <begin position="49"/>
            <end position="90"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="4">
        <location>
            <begin position="52"/>
            <end position="90"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00007825"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022964"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023002"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="Pfam" id="PF00775"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="ABX35781.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="310" mass="32126" checksum="E93820471DC88ECE" modified="2008-01-15" version="1">MNHSHDAHDLAHDLGLQHDLQVMARRLFERRRILGLMASGGAAALLSACGGGGDSSDSTGTGTGTGTGTGTGTDTGTGTGTGTGAGTTTGTCMVDPTETEGPYPADGSNGSRGSLVNVLSQSGVVRSDLRSSFGGMSGMAAGLPLTLKITLVNVSTNCSPLEGYAIYLWHCTREGEYSLYSTDLLNQNFLRGVQATDSNGECTFVTIFPGCYDGRWPHMHFEVFRSLNTAGSYTNKLLTSQMAMPKDVASAVYAGVSGYSASVSNLSRVSVTSDNVFGDNTSEQIAWQTPTFTGDTTNGHTATISIGIAV</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="68" xmlns="http://uniprot.org/uniprot">
    <accession>A9BUJ3</accession>
    <name>A9BUJ3_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="5">RNA polymerase-binding transcription factor DksA</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="5" type="primary">dksA</name>
        <name evidence="9" type="ordered locus">Daci_1457</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="9 10" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="10" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="5">Transcription factor that acts by binding directly to the RNA polymerase (RNAP). Required for negative regulation of rRNA expression and positive regulation of several amino acid biosynthesis promoters.</text>
    </comment>
    <comment type="subunit">
        <text evidence="5">Interacts directly with the RNA polymerase.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="5">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="5">Belongs to the DksA family.</text>
    </comment>
    <comment type="caution">
        <text evidence="5">Lacks conserved residue(s) required for the propagation of feature annotation.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX34101.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012203387.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_1457"/>
    <dbReference type="PRIDE" id="A9BUJ3"/>
    <dbReference type="EnsemblBacteria" id="ABX34101">
        <property type="protein sequence ID" value="ABX34101"/>
        <property type="gene ID" value="Daci_1457"/>
    </dbReference>
    <dbReference type="GeneID" id="60685998"/>
    <dbReference type="KEGG" id="dac:Daci_1457"/>
    <dbReference type="eggNOG" id="COG1734">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_043144_2_2_4"/>
    <dbReference type="OMA" id="KKGEEYM"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008270">
        <property type="term" value="F:zinc ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0010468">
        <property type="term" value="P:regulation of gene expression"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00926">
        <property type="entry name" value="DksA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012784">
        <property type="entry name" value="DksA_RNA_pol-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037187">
        <property type="entry name" value="DnaK_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000962">
        <property type="entry name" value="Znf_DskA_TraR"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020458">
        <property type="entry name" value="Znf_DskA_TraR_CS"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01258">
        <property type="entry name" value="zf-dskA_traR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF109635">
        <property type="entry name" value="SSF109635"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR02420">
        <property type="entry name" value="dksA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01102">
        <property type="entry name" value="ZF_DKSA_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51128">
        <property type="entry name" value="ZF_DKSA_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="1 5" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="2 5" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4 5" id="KW-0862">Zinc</keyword>
    <keyword evidence="3 5" id="KW-0863">Zinc-finger</keyword>
    <feature type="domain" description="DksA C4-type" evidence="8">
        <location>
            <begin position="84"/>
            <end position="164"/>
        </location>
    </feature>
    <feature type="zinc finger region" description="dksA C4-type" evidence="6">
        <location>
            <begin position="127"/>
            <end position="151"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="7">
        <location>
            <begin position="1"/>
            <end position="21"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="7">
        <location>
            <begin position="1"/>
            <end position="16"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022490"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022771"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022833"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00926"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00510"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="PROSITE" id="PS51128"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="ABX34101.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="164" mass="18581" checksum="9E31DD61D863B716" modified="2008-01-15" version="1">MPTTTQTPSSGSTKRDPKLANAWKTKSVEELTDAEVLAMSDDEYMNEKQMAFFRLKLLTLKHDMHTNAGETAENLREDTVVVPDPADRATIEEEHALELRTRDRERKLLKKIEQSIARIDAGDYGYCDETGEPIGVGRLLARPTATLSLEAQQRRELKQKMYGD</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="70" xmlns="http://uniprot.org/uniprot">
    <accession>A9BUR7</accession>
    <name>A9BUR7_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="7">Thiol:disulfide interchange protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="10" type="ordered locus">Daci_1531</name>
    </gene>
    <organism evidence="10 11">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="10 11" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="11">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="11" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="11">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="7">Required for disulfide bond formation in some periplasmic proteins. Acts by transferring its disulfide bond to other proteins and is reduced in the process.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1 7">Periplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2 7">Belongs to the thioredoxin family. DsbC subfamily.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX34175.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_1531"/>
    <dbReference type="PRIDE" id="A9BUR7"/>
    <dbReference type="EnsemblBacteria" id="ABX34175">
        <property type="protein sequence ID" value="ABX34175"/>
        <property type="gene ID" value="Daci_1531"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_1531"/>
    <dbReference type="eggNOG" id="COG1651">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_083593_1_1_4"/>
    <dbReference type="OMA" id="QMIVYKA"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0042597">
        <property type="term" value="C:periplasmic space"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="CDD" id="cd03020">
        <property type="entry name" value="DsbA_DsbC_DsbG"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.10.450.70">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR033954">
        <property type="entry name" value="DiS-bond_Isoase_DsbC/G"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018950">
        <property type="entry name" value="DiS-bond_isomerase_DsbC/G_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009094">
        <property type="entry name" value="DiS-bond_isomerase_DsbC/G_N_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012336">
        <property type="entry name" value="Thioredoxin-like_fold"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036249">
        <property type="entry name" value="Thioredoxin-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017937">
        <property type="entry name" value="Thioredoxin_CS"/>
    </dbReference>
    <dbReference type="Pfam" id="PF10411">
        <property type="entry name" value="DsbC_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13098">
        <property type="entry name" value="Thioredoxin_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52833">
        <property type="entry name" value="SSF52833"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54423">
        <property type="entry name" value="SSF54423"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00194">
        <property type="entry name" value="THIOREDOXIN_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-1015">Disulfide bond</keyword>
    <keyword evidence="4 7" id="KW-0574">Periplasm</keyword>
    <keyword evidence="6 7" id="KW-0676">Redox-active center</keyword>
    <keyword evidence="11" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 7" id="KW-0732">Signal</keyword>
    <feature type="domain" description="DsbC_N" evidence="8">
        <location>
            <begin position="61"/>
            <end position="115"/>
        </location>
    </feature>
    <feature type="domain" description="Thioredoxin-like_fold" evidence="9">
        <location>
            <begin position="144"/>
            <end position="263"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004418"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00009813"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022729"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022764"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023157"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023284"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="RuleBase" id="RU364038"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="Pfam" id="PF10411"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="9">
        <source>
            <dbReference type="Pfam" id="PF13098"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="EMBL" id="ABX34175.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="272" mass="30128" checksum="251EAA6BB3F0BAD2" modified="2008-01-15" version="1">MRLVPLLRGAPRRAIPLNHGAAGLNAAPPTHRIAMKLFACLLTAASLTWSLGVHAQDANLRKTLTERIPQLEKIDEIRPTPMSGLFEVRIGTDLFYTDAKGNYLIQGELIDTKARRNLTEDRMNQLTAVDFKQLPLKDAVTIVHGKGERKMAVFEDPNCGYCKRFERDLQTVDNVTIYLFLYPILSPDSAEKSRNIWCAKDQAGAWADHMLRDKVPAAAQCDTSAVQRNLAFGRKYKITGTPTVIFTNNTRVPGAISAQEVEKNLAAAAAAR</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="57" xmlns="http://uniprot.org/uniprot">
    <accession>A9BV07</accession>
    <name>A9BV07_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ordered locus">Daci_1829</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="5" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Periplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the UPF0065 (bug) family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX34469.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012203754.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="PRIDE" id="A9BV07"/>
    <dbReference type="EnsemblBacteria" id="ABX34469">
        <property type="protein sequence ID" value="ABX34469"/>
        <property type="gene ID" value="Daci_1829"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_1829"/>
    <dbReference type="eggNOG" id="COG3181">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_045683_0_1_4"/>
    <dbReference type="OMA" id="IGSTPHF"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0042597">
        <property type="term" value="C:periplasmic space"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.190.150">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005064">
        <property type="entry name" value="BUG"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR042100">
        <property type="entry name" value="Bug_dom1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR42928">
        <property type="entry name" value="PTHR42928"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03401">
        <property type="entry name" value="TctC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF017082">
        <property type="entry name" value="YflP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="3">
        <location>
            <begin position="1"/>
            <end position="25"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5002732551" evidence="3">
        <location>
            <begin position="26"/>
            <end position="327"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004418"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00006987"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="ABX34469.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="327" mass="33537" checksum="04243A44DFDFB68E" modified="2008-01-15" version="1">MHEFRISRRALIGAAAVLAAGPLCAQTTYPNKPIRVVVGYAAGGSVDLVGRVVGDILAKHLNATVVVDNVPGAAGVVAAQRVVGAKADGYTLLAGSSNELAGTKFVNAAQKYDPATDLTGIALTGVLPNLWVAGTKMPARTIDEFIALAKAHPGKYSYGSPGIGSTPHFSGELIKKIAGVDIVHVPYKGSAAMTSDLAGGNLDFAIVSPSVAAPFIQSGKIKALGVTTAHRIAMMKDVPALGENAALKGYALSGWFGLAGPKDLPAEVVASLHKALKAGLADPAMRARLEGAGIIAPTGDENLGQIIRTDMAKYAELVKFAKITPEN</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="92" xmlns="http://uniprot.org/uniprot">
    <accession>A9BV11</accession>
    <name>A9BV11_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="5">ATP-dependent dethiobiotin synthetase BioD</fullName>
            <ecNumber evidence="5">6.3.3.3</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="5">DTB synthetase</fullName>
            <shortName evidence="5">DTBS</shortName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="5">Dethiobiotin synthase</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="5" type="primary">bioD</name>
        <name evidence="6" type="ordered locus">Daci_1833</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="7" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="5">Catalyzes a mechanistically unusual reaction, the ATP-dependent insertion of CO2 between the N7 and N8 nitrogen atoms of 7,8-diaminopelargonic acid (DAPA, also called 7,8-diammoniononanoate) to form a ureido ring.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="5">
            <text>(7R,8S)-7,8-diammoniononanoate + ATP + CO2 = (4R,5S)-dethiobiotin + ADP + 3 H(+) + phosphate</text>
            <dbReference type="Rhea" id="RHEA:15805"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:16526"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:43474"/>
            <dbReference type="ChEBI" id="CHEBI:149469"/>
            <dbReference type="ChEBI" id="CHEBI:149473"/>
            <dbReference type="ChEBI" id="CHEBI:456216"/>
            <dbReference type="EC" id="6.3.3.3"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="1 5">
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </cofactor>
    </comment>
    <comment type="pathway">
        <text evidence="5">Cofactor biosynthesis; biotin biosynthesis; biotin from 7,8-diaminononanoate: step 1/2.</text>
    </comment>
    <comment type="subunit">
        <text evidence="5">Homodimer.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="5">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="5">Belongs to the dethiobiotin synthetase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="5">Lacks conserved residue(s) required for the propagation of feature annotation.</text>
    </comment>
    <dbReference type="EC" id="6.3.3.3" evidence="5"/>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX34473.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012203758.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_1833"/>
    <dbReference type="PRIDE" id="A9BV11"/>
    <dbReference type="EnsemblBacteria" id="ABX34473">
        <property type="protein sequence ID" value="ABX34473"/>
        <property type="gene ID" value="Daci_1833"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_1833"/>
    <dbReference type="eggNOG" id="COG0132">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_072551_0_0_4"/>
    <dbReference type="OMA" id="SPHWAAE"/>
    <dbReference type="UniPathway" id="UPA00078">
        <property type="reaction ID" value="UER00161"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004141">
        <property type="term" value="F:dethiobiotin synthase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000287">
        <property type="term" value="F:magnesium ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009102">
        <property type="term" value="P:biotin biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00336">
        <property type="entry name" value="BioD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004472">
        <property type="entry name" value="DTB_synth_BioD"/>
    </dbReference>
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        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43210">
        <property type="entry name" value="PTHR43210"/>
        <property type="match status" value="1"/>
    </dbReference>
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        <property type="match status" value="1"/>
    </dbReference>
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        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00347">
        <property type="entry name" value="bioD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4 5" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="3 5" id="KW-0093">Biotin biosynthesis</keyword>
    <keyword evidence="5" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="5 6" id="KW-0436">Ligase</keyword>
    <keyword evidence="5" id="KW-0460">Magnesium</keyword>
    <keyword evidence="5" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="2 5" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <feature type="active site" evidence="5">
        <location>
            <position position="42"/>
        </location>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <begin position="17"/>
            <end position="22"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <position position="21"/>
        </location>
        <ligand>
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <position position="60"/>
        </location>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <begin position="121"/>
            <end position="124"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <position position="121"/>
        </location>
        <ligand>
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <begin position="181"/>
            <end position="182"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <position position="216"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001946"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022756"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00336"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="ABX34473.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="233" mass="24771" checksum="6978B3A65DB83687" modified="2008-01-15" version="1">MNAHRTIGCFVTGTDTGVGKTLASCGLLHALARHHARVVGMKAVAAGAEPDGHGGWANEDTLALRAASTLAVPPELDNPVLLPDPMSPHIAAQRAGRSIEIAHIVDSYRRLAQQADAVVVEGAGGFLVPLSDQLSGADLACALDLPVVMVVGLRLGCLNHAALTAEAIRARGLRLAGWIASRVDPAMLVPEENMAWLRQHLDRQLQAPLLADIPFQQHPDPRATTYTLPEQWQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="90" xmlns="http://uniprot.org/uniprot">
    <accession>A9BV38</accession>
    <name>A9BV38_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="7">Respiratory-chain NADH dehydrogenase domain 51 kDa subunit</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ordered locus">Daci_1860</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
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        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="8" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the complex I 51 kDa subunit family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX34500.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
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        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_1860"/>
    <dbReference type="PRIDE" id="A9BV38"/>
    <dbReference type="EnsemblBacteria" id="ABX34500">
        <property type="protein sequence ID" value="ABX34500"/>
        <property type="gene ID" value="Daci_1860"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_1860"/>
    <dbReference type="eggNOG" id="COG1894">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="eggNOG" id="COG1905">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_014881_3_1_4"/>
    <dbReference type="OMA" id="DRMLMEG"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051539">
        <property type="term" value="F:4 iron, 4 sulfur cluster binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0010181">
        <property type="term" value="F:FMN binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
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        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008137">
        <property type="term" value="F:NADH dehydrogenase (ubiquinone) activity"/>
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    </dbReference>
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    </dbReference>
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    </dbReference>
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    </dbReference>
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    </dbReference>
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    </dbReference>
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    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="NADH_4Fe-4S" evidence="6">
        <location>
            <begin position="627"/>
            <end position="672"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00007523"/>
        </source>
    </evidence>
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        <source>
            <dbReference type="ARBA" id="ARBA00022485"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023004"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023014"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="SMART" id="SM00928"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="ABX34500.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="727" mass="75013" checksum="474A160B83591376" modified="2008-01-15" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="65" xmlns="http://uniprot.org/uniprot">
    <accession>A9BV43</accession>
    <name>A9BV43_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Tetratricopeptide TPR_2 repeat protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Daci_2067</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="4" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX34707.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012203990.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_2067"/>
    <dbReference type="PRIDE" id="A9BV43"/>
    <dbReference type="EnsemblBacteria" id="ABX34707">
        <property type="protein sequence ID" value="ABX34707"/>
        <property type="gene ID" value="Daci_2067"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_2067"/>
    <dbReference type="eggNOG" id="COG0457">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_069566_0_0_4"/>
    <dbReference type="OMA" id="WYASLAH"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.25.40.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011990">
        <property type="entry name" value="TPR-like_helical_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019734">
        <property type="entry name" value="TPR_repeat"/>
    </dbReference>
    <dbReference type="SMART" id="SM00028">
        <property type="entry name" value="TPR"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48452">
        <property type="entry name" value="SSF48452"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50005">
        <property type="entry name" value="TPR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0732">Signal</keyword>
    <keyword evidence="1" id="KW-0802">TPR repeat</keyword>
    <feature type="signal peptide" evidence="2">
        <location>
            <begin position="1"/>
            <end position="32"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5002735117" evidence="2">
        <location>
            <begin position="33"/>
            <end position="343"/>
        </location>
    </feature>
    <feature type="repeat" description="TPR" evidence="1">
        <location>
            <begin position="138"/>
            <end position="171"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00339"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ABX34707.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="343" mass="35954" checksum="FC5B434F6C096A6E" modified="2008-01-15" version="1">MRHQENTRAGRTPAPAPLATLAALATLALALAGCASKGPQGYGAPSAQQETAAQAQQQLQNAQQATQVDNAQTYLDLITQMQQAGQWYASLAHTEAFEQQYGVNPESRLMRADALRNTGQVEQARQAYLALLQGATTARARRGLGLLYASQGQYGQAVEQLDKARQLNPIDANVLSDLAYAHMLDGRLAAAQMPIMQASQLAPANARVQLNMALFWLASGNQAQASQLLRQLAQPQAKGALPMIDQTSLQTLQAQLASVRDAVRLRGDSLPAEAGAAVSSAPVLPSVPPSALPPALPPVPTLGTRPEARATEALPETLPAGITRRILLSEPPGAAGAAPASPL</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2021-06-02" version="66" xmlns="http://uniprot.org/uniprot">
    <accession>A9BVB3</accession>
    <name>A9BVB3_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="7">Inner-membrane translocator</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ordered locus">Daci_2137</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="8" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX34777.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012204060.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_2137"/>
    <dbReference type="EnsemblBacteria" id="ABX34777">
        <property type="protein sequence ID" value="ABX34777"/>
        <property type="gene ID" value="Daci_2137"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_2137"/>
    <dbReference type="eggNOG" id="COG1079">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_040769_1_1_4"/>
    <dbReference type="OMA" id="MIFGNWM"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0022857">
        <property type="term" value="F:transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001851">
        <property type="entry name" value="ABC_transp_permease"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02653">
        <property type="entry name" value="BPD_transp_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="5 6" id="KW-0472">Membrane</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 6" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="4 6" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="6"/>
            <end position="26"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="33"/>
            <end position="55"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="61"/>
            <end position="84"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="91"/>
            <end position="111"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="131"/>
            <end position="158"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="188"/>
            <end position="206"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="263"/>
            <end position="283"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="ABX34777.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="306" mass="31986" checksum="39CD8D471A3C7879" modified="2008-01-15" version="1">MESYALLLGSTLSAGTVLALAALGLLINEKAGIVNLGAEGMMLCAAIAGFAAVVHTGSTTVGFLAGMGAGALLAAIFGVLVIWLNTNQYATGLALSLFGTGFSAFLGLGYVQARLPELPKFAVPWLSDLPVVGTALFRLHPLVYGAVVIAAALVWFLYRTRAGLVLRAVGESPQSAHALGYPVRRIRLAAVVFGGAMCGLAGAYISTVYTPLWVEGMVSGRGWIALALTTFATWRPARVLLGAYLFGGVTMLQFHLQATGVQVASQLLSMLPYLATIVVLVLISRNPTWIRANMPASLGKPFYPGS</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="66" xmlns="http://uniprot.org/uniprot">
    <accession>A9BVC7</accession>
    <name>A9BVC7_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Diguanylate cyclase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ordered locus">Daci_2151</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="6" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX34791.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012204074.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_2151"/>
    <dbReference type="PRIDE" id="A9BVC7"/>
    <dbReference type="EnsemblBacteria" id="ABX34791">
        <property type="protein sequence ID" value="ABX34791"/>
        <property type="gene ID" value="Daci_2151"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_2151"/>
    <dbReference type="eggNOG" id="COG3706">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="eggNOG" id="COG4191">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_000445_134_0_4"/>
    <dbReference type="OMA" id="EPLQFVD"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0007165">
        <property type="term" value="P:signal transduction"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd01949">
        <property type="entry name" value="GGDEF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.70.270">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000160">
        <property type="entry name" value="GGDEF_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003660">
        <property type="entry name" value="HAMP_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029787">
        <property type="entry name" value="Nucleotide_cyclase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043128">
        <property type="entry name" value="Rev_trsase/Diguanyl_cyclase"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00990">
        <property type="entry name" value="GGDEF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00267">
        <property type="entry name" value="GGDEF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55073">
        <property type="entry name" value="SSF55073"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00254">
        <property type="entry name" value="GGDEF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50887">
        <property type="entry name" value="GGDEF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50885">
        <property type="entry name" value="HAMP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="2" id="KW-0472">Membrane</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="2" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="30"/>
            <end position="49"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="327"/>
            <end position="346"/>
        </location>
    </feature>
    <feature type="domain" description="HAMP" evidence="3">
        <location>
            <begin position="347"/>
            <end position="400"/>
        </location>
    </feature>
    <feature type="domain" description="GGDEF" evidence="4">
        <location>
            <begin position="454"/>
            <end position="583"/>
        </location>
    </feature>
    <feature type="coiled-coil region" evidence="1">
        <location>
            <begin position="385"/>
            <end position="419"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="PROSITE" id="PS50885"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="PROSITE" id="PS50887"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="ABX34791.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="583" mass="63342" checksum="073C70894031CB17" modified="2008-01-15" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="77" xmlns="http://uniprot.org/uniprot">
    <accession>A9BVS1</accession>
    <name>A9BVS1_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Transcriptional regulator, RpiR family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ordered locus">Daci_2796</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="6" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX35434.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012204644.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_2796"/>
    <dbReference type="PRIDE" id="A9BVS1"/>
    <dbReference type="EnsemblBacteria" id="ABX35434">
        <property type="protein sequence ID" value="ABX35434"/>
        <property type="gene ID" value="Daci_2796"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_2796"/>
    <dbReference type="eggNOG" id="COG1737">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_055769_1_3_4"/>
    <dbReference type="OMA" id="STQFQGG"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0097367">
        <property type="term" value="F:carbohydrate derivative binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003700">
        <property type="term" value="F:DNA-binding transcription factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016301">
        <property type="term" value="F:kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006096">
        <property type="term" value="P:glycolytic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd05013">
        <property type="entry name" value="SIS_RpiR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009057">
        <property type="entry name" value="Homeobox-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000281">
        <property type="entry name" value="HTH_RpiR"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035472">
        <property type="entry name" value="RpiR-like_SIS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001347">
        <property type="entry name" value="SIS_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR046348">
        <property type="entry name" value="SIS_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01418">
        <property type="entry name" value="HTH_6"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01380">
        <property type="entry name" value="SIS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46689">
        <property type="entry name" value="SSF46689"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53697">
        <property type="entry name" value="SSF53697"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51071">
        <property type="entry name" value="HTH_RPIR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51464">
        <property type="entry name" value="SIS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0324">Glycolysis</keyword>
    <keyword evidence="1" id="KW-0418">Kinase</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="HTH rpiR-type" evidence="3">
        <location>
            <begin position="1"/>
            <end position="77"/>
        </location>
    </feature>
    <feature type="domain" description="SIS" evidence="4">
        <location>
            <begin position="124"/>
            <end position="261"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022777"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023152"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="PROSITE" id="PS51071"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="PROSITE" id="PS51464"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="ABX35434.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="292" mass="31544" checksum="35E1458741496A4C" modified="2008-01-15" version="1">MSVQDDIRQRFAELSPALQQVARFVLEHPNDVVTASMRSVGTRAGSPPATLVRFAQWLGFDGWPQLKQAFAQDMGLGSDEAYGQRAKALVGRAGDHDLVGETFEVHRRNLESTERRLGDALQQACALLEKARSVHVAGFRASYPVAFSFVYVYRLLRASVHLLDGQGGTLEMQCRAMERGDALLVVAFAPYSREALAVTQAARDAGCRIVALTDSPASPLALLADATLLFSLHSPSFFPSITSAVALSEALVELLASRAGKGVVQRIGQAEEQLFASGAYLEAPRSRKAGRD</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="84" xmlns="http://uniprot.org/uniprot">
    <accession>A9BVU6</accession>
    <name>A9BVU6_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Transcriptional regulator, LuxR family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ordered locus">Daci_2821</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="5" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX35459.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_2821"/>
    <dbReference type="PRIDE" id="A9BVU6"/>
    <dbReference type="EnsemblBacteria" id="ABX35459">
        <property type="protein sequence ID" value="ABX35459"/>
        <property type="gene ID" value="Daci_2821"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_2821"/>
    <dbReference type="eggNOG" id="COG2197">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_077414_0_0_4"/>
    <dbReference type="OMA" id="TVKTYRN"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006355">
        <property type="term" value="P:regulation of transcription, DNA-templated"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd06170">
        <property type="entry name" value="LuxR_C_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016032">
        <property type="entry name" value="Sig_transdc_resp-reg_C-effctor"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000792">
        <property type="entry name" value="Tscrpt_reg_LuxR_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR039420">
        <property type="entry name" value="WalR-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR48111">
        <property type="entry name" value="PTHR48111"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00196">
        <property type="entry name" value="GerE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00038">
        <property type="entry name" value="HTHLUXR"/>
    </dbReference>
    <dbReference type="SMART" id="SM00421">
        <property type="entry name" value="HTH_LUXR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46894">
        <property type="entry name" value="SSF46894"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50043">
        <property type="entry name" value="HTH_LUXR_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HTH luxR-type" evidence="3">
        <location>
            <begin position="229"/>
            <end position="294"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="1"/>
            <end position="28"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="2">
        <location>
            <begin position="1"/>
            <end position="15"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="PROSITE" id="PS50043"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="ABX35459.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="295" mass="32188" checksum="5C0EB86F406AAA64" modified="2008-01-15" version="1">MRHWTASSDTPDASALSGHASGHVPSHVPSHAIGHMVASLGEPGFARQVLEAMNPLLPAASWSVYRTGPRSRPQLFLSASSEARDTTRDCWWAYLSGPYLRDSTWNHGDAGPARSTALCHITAQEVEGEHRALVYDAHGMAERVSIVEHQDDGGVFAVNFYRHQHQRALGDAQIDRFGSMAPVLLALAHKHIALTQAQPAVVTALASAPAAPPSQPRQRQTLPALRMRLLQAQPDLTPRELDVCARLLQGMTHEGIACDLCLSLPTVKTYRNRAFARLGIHFRSELFALAMEPQG</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2021-06-02" version="41" xmlns="http://uniprot.org/uniprot">
    <accession>A9BW30</accession>
    <name>A9BW30_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_3208</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX35846.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_3208"/>
    <dbReference type="EnsemblBacteria" id="ABX35846">
        <property type="protein sequence ID" value="ABX35846"/>
        <property type="gene ID" value="Daci_3208"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_3208"/>
    <dbReference type="eggNOG" id="ENOG502ZP4J">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_2259146_0_0_4"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="28"/>
            <end position="59"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX35846.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="125" mass="13407" checksum="C5CD10B6DEA727AF" modified="2008-01-15" version="1">MTPPIQLPTEPAPPGGFRFSGATAMQRVTPTEPFNPDPDARYLRECSTPGPVHEPEADGVPGGWLLMVLSALLLLALTGCSQAGAQEQPTDTAQELKRAAAGKWLCPGMHAEWISNTEVQCLKER</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="60" xmlns="http://uniprot.org/uniprot">
    <accession>A9BWC8</accession>
    <name>A9BWC8_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ordered locus">Daci_3512</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="5" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Periplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the UPF0065 (bug) family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX36148.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012205348.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_3512"/>
    <dbReference type="PRIDE" id="A9BWC8"/>
    <dbReference type="EnsemblBacteria" id="ABX36148">
        <property type="protein sequence ID" value="ABX36148"/>
        <property type="gene ID" value="Daci_3512"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_3512"/>
    <dbReference type="eggNOG" id="COG3181">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_045683_0_1_4"/>
    <dbReference type="OMA" id="AMFAKGP"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0042597">
        <property type="term" value="C:periplasmic space"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.190.150">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005064">
        <property type="entry name" value="BUG"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR042100">
        <property type="entry name" value="Bug_dom1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006311">
        <property type="entry name" value="TAT_signal"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR42928">
        <property type="entry name" value="PTHR42928"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03401">
        <property type="entry name" value="TctC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF017082">
        <property type="entry name" value="YflP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51318">
        <property type="entry name" value="TAT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="3">
        <location>
            <begin position="1"/>
            <end position="34"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5002733122" evidence="3">
        <location>
            <begin position="35"/>
            <end position="334"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004418"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00006987"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="ABX36148.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="334" mass="35083" checksum="EF04FBFC5444506C" modified="2008-01-15" version="1">MSISHCRARRRLVALAATTTVATLAGLASPGLMAQGAFPSKAITMVVPYPPGGSNDVFARQVAKEMGDLLKQAVIVDNRPGASGNTGTASVAKAAADGYTLVAVSSSMTTNAAVQAKMPFDPVKDLAPVAMFAKGPLVVAVNNEFPARTPQDLVRAIKASPGQFNYATSGTGSINHFATEMMRSMVPGMDIMHVPYKGQGPAVTDVIGNQVQMLVSSGPSILPMVRNGKLRAIGITSLKPSPIAPDLTPMATAIPGYEFDLWWGLLAPAGTPADIVDRLNQAVNQVLAKPTIQASFLREGAIANPVTPQQFAQVIRSDVARWKQLAKDRNIQAD</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="40" xmlns="http://uniprot.org/uniprot">
    <accession>A9BWG0</accession>
    <name>A9BWG0_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_3546</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX36180.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="PRIDE" id="A9BWG0"/>
    <dbReference type="EnsemblBacteria" id="ABX36180">
        <property type="protein sequence ID" value="ABX36180"/>
        <property type="gene ID" value="Daci_3546"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_3546"/>
    <dbReference type="eggNOG" id="ENOG50343B3">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_2069238_0_0_4"/>
    <dbReference type="OMA" id="KSSGWLT"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="1">
        <location>
            <begin position="1"/>
            <end position="20"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5002736115" evidence="1">
        <location>
            <begin position="21"/>
            <end position="118"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX36180.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="118" mass="13021" checksum="9B300B8BFD6F35E9" modified="2008-01-15" version="1">MIKISSVALMLCTASLVAVASPQNGPTLSIHFEYNPEEYADVRDLQKQLVKALKRSGAGELDEPELHADGNDGYFDIRGRDAEKLYRIVRPILKSSPLMKGAEVTKMNSEGKTKSTIR</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-05-25" version="81" xmlns="http://uniprot.org/uniprot">
    <accession>A9BX28</accession>
    <name>A9BX28_DELAS</name>
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        <submittedName>
            <fullName evidence="2">Putative transcriptional regulator, ArsR family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_4382</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX37013.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012206185.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_4382"/>
    <dbReference type="EnsemblBacteria" id="ABX37013">
        <property type="protein sequence ID" value="ABX37013"/>
        <property type="gene ID" value="Daci_4382"/>
    </dbReference>
    <dbReference type="GeneID" id="60689077"/>
    <dbReference type="KEGG" id="dac:Daci_4382"/>
    <dbReference type="eggNOG" id="COG0640">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_097806_2_2_4"/>
    <dbReference type="OMA" id="ENCCQGE"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003700">
        <property type="term" value="F:DNA-binding transcription factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd00090">
        <property type="entry name" value="HTH_ARSR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011991">
        <property type="entry name" value="ArsR-like_HTH"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001845">
        <property type="entry name" value="HTH_ArsR_DNA-bd_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036390">
        <property type="entry name" value="WH_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00778">
        <property type="entry name" value="HTHARSR"/>
    </dbReference>
    <dbReference type="SMART" id="SM00418">
        <property type="entry name" value="HTH_ARSR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46785">
        <property type="entry name" value="SSF46785"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50987">
        <property type="entry name" value="HTH_ARSR_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HTH arsR-type" evidence="1">
        <location>
            <begin position="1"/>
            <end position="95"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS50987"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX37013.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="107" mass="11432" checksum="784AE942324CD1D0" modified="2008-01-15" version="1">MDESEVVESLAALAHPLRLRIFRALVVAGPEGLTPGVMAESLGAANTTLSFHLKELTRSGLVTQERASRNLVYRAAYERMNGLLGFLTQNCCAGAACEVADMSCKSC</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="100" xmlns="http://uniprot.org/uniprot">
    <accession>A9BX52</accession>
    <name>A9BX52_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">Histidine kinase</fullName>
            <ecNumber evidence="2">2.7.13.3</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="8" type="ordered locus">Daci_4406</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="9" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>ATP + protein L-histidine = ADP + protein N-phospho-L-histidine.</text>
            <dbReference type="EC" id="2.7.13.3"/>
        </reaction>
    </comment>
    <dbReference type="EC" id="2.7.13.3" evidence="2"/>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX37037.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012206209.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_4406"/>
    <dbReference type="PRIDE" id="A9BX52"/>
    <dbReference type="EnsemblBacteria" id="ABX37037">
        <property type="protein sequence ID" value="ABX37037"/>
        <property type="gene ID" value="Daci_4406"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_4406"/>
    <dbReference type="eggNOG" id="COG0745">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="eggNOG" id="COG2205">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_000445_114_15_4"/>
    <dbReference type="OMA" id="SKMNAGM"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000155">
        <property type="term" value="F:phosphorelay sensor kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006355">
        <property type="term" value="P:regulation of transcription, DNA-templated"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd00082">
        <property type="entry name" value="HisKA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="CDD" id="cd00130">
        <property type="entry name" value="PAS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.565.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011006">
        <property type="entry name" value="CheY-like_superfamily"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003594">
        <property type="entry name" value="HATPase_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036890">
        <property type="entry name" value="HATPase_C_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005467">
        <property type="entry name" value="His_kinase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003661">
        <property type="entry name" value="HisK_dim/P"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036097">
        <property type="entry name" value="HisK_dim/P_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000014">
        <property type="entry name" value="PAS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035965">
        <property type="entry name" value="PAS-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013767">
        <property type="entry name" value="PAS_fold"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004358">
        <property type="entry name" value="Sig_transdc_His_kin-like_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001789">
        <property type="entry name" value="Sig_transdc_resp-reg_receiver"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02518">
        <property type="entry name" value="HATPase_c"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00512">
        <property type="entry name" value="HisKA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00989">
        <property type="entry name" value="PAS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00072">
        <property type="entry name" value="Response_reg"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00344">
        <property type="entry name" value="BCTRLSENSOR"/>
    </dbReference>
    <dbReference type="SMART" id="SM00387">
        <property type="entry name" value="HATPase_c"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00388">
        <property type="entry name" value="HisKA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00091">
        <property type="entry name" value="PAS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00448">
        <property type="entry name" value="REC"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47384">
        <property type="entry name" value="SSF47384"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52172">
        <property type="entry name" value="SSF52172"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55785">
        <property type="entry name" value="SSF55785"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55874">
        <property type="entry name" value="SSF55874"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00229">
        <property type="entry name" value="sensory_box"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50109">
        <property type="entry name" value="HIS_KIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50112">
        <property type="entry name" value="PAS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50110">
        <property type="entry name" value="RESPONSE_REGULATORY"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="8" id="KW-0418">Kinase</keyword>
    <keyword evidence="3 4" id="KW-0597">Phosphoprotein</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="8" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Response regulatory" evidence="6">
        <location>
            <begin position="19"/>
            <end position="135"/>
        </location>
    </feature>
    <feature type="domain" description="PAS" evidence="7">
        <location>
            <begin position="147"/>
            <end position="192"/>
        </location>
    </feature>
    <feature type="domain" description="Histidine kinase" evidence="5">
        <location>
            <begin position="291"/>
            <end position="509"/>
        </location>
    </feature>
    <feature type="domain" description="Response regulatory" evidence="6">
        <location>
            <begin position="532"/>
            <end position="653"/>
        </location>
    </feature>
    <feature type="modified residue" description="4-aspartylphosphate" evidence="4">
        <location>
            <position position="67"/>
        </location>
    </feature>
    <feature type="modified residue" description="4-aspartylphosphate" evidence="4">
        <location>
            <position position="581"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00000085"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00012438"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022553"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00169"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="PROSITE" id="PS50109"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="PROSITE" id="PS50110"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="PROSITE" id="PS50112"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="ABX37037.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="653" mass="70979" checksum="82EC76B0D90D3FBC" modified="2008-01-15" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="58" xmlns="http://uniprot.org/uniprot">
    <accession>A9BX63</accession>
    <name>A9BX63_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">YD repeat protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_5510</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX38139.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_5510"/>
    <dbReference type="PRIDE" id="A9BX63"/>
    <dbReference type="EnsemblBacteria" id="ABX38139">
        <property type="protein sequence ID" value="ABX38139"/>
        <property type="gene ID" value="Daci_5510"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_5510"/>
    <dbReference type="eggNOG" id="COG3209">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_003684_1_1_4"/>
    <dbReference type="OMA" id="YYQNDHL"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001826">
        <property type="entry name" value="RHS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR022385">
        <property type="entry name" value="Rhs_assc_core"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR031325">
        <property type="entry name" value="RHS_repeat"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006530">
        <property type="entry name" value="YD"/>
    </dbReference>
    <dbReference type="Pfam" id="PF05593">
        <property type="entry name" value="RHS_repeat"/>
        <property type="match status" value="8"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00394">
        <property type="entry name" value="RHSPROTEIN"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR03696">
        <property type="entry name" value="Rhs_assc_core"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01643">
        <property type="entry name" value="YD_repeat_2x"/>
        <property type="match status" value="9"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1274"/>
            <end position="1305"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1332"/>
            <end position="1390"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="1351"/>
            <end position="1375"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX38139.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="1390" mass="153105" checksum="A73FE213D72995E5" modified="2008-01-15" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="68" xmlns="http://uniprot.org/uniprot">
    <accession>A9BX99</accession>
    <name>A9BX99_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Putative signal peptide protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Daci_5546</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="4" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX38175.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012207344.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_5546"/>
    <dbReference type="PRIDE" id="A9BX99"/>
    <dbReference type="EnsemblBacteria" id="ABX38175">
        <property type="protein sequence ID" value="ABX38175"/>
        <property type="gene ID" value="Daci_5546"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_5546"/>
    <dbReference type="eggNOG" id="COG0726">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="eggNOG" id="COG3868">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_014516_0_0_4"/>
    <dbReference type="OMA" id="NQNENVY"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005975">
        <property type="term" value="P:carbohydrate metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.20.20.70">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013785">
        <property type="entry name" value="Aldolase_TIM"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004352">
        <property type="entry name" value="GH114_TIM-barrel"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011330">
        <property type="entry name" value="Glyco_hydro/deAcase_b/a-brl"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017853">
        <property type="entry name" value="Glycoside_hydrolase_SF"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016925">
        <property type="entry name" value="UCP029570"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03537">
        <property type="entry name" value="Glyco_hydro_114"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF029570">
        <property type="entry name" value="UCP029570"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51445">
        <property type="entry name" value="SSF51445"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF88713">
        <property type="entry name" value="SSF88713"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="1">
        <location>
            <begin position="1"/>
            <end position="22"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5002735924" evidence="1">
        <location>
            <begin position="23"/>
            <end position="942"/>
        </location>
    </feature>
    <feature type="domain" description="Glyco_hydro_114" evidence="2">
        <location>
            <begin position="27"/>
            <end position="267"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF03537"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ABX38175.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="942" mass="104594" checksum="0E22329A05B592D9" modified="2008-01-15" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="62" xmlns="http://uniprot.org/uniprot">
    <accession>A9BXB4</accession>
    <name>A9BXB4_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="3">3-oxoacid CoA-transferase, A subunit</fullName>
            <ecNumber evidence="3">2.8.3.5</ecNumber>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Daci_5561</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="4" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the 3-oxoacid CoA-transferase subunit A family.</text>
    </comment>
    <dbReference type="EC" id="2.8.3.5" evidence="3"/>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX38190.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012207359.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_5561"/>
    <dbReference type="PRIDE" id="A9BXB4"/>
    <dbReference type="EnsemblBacteria" id="ABX38190">
        <property type="protein sequence ID" value="ABX38190"/>
        <property type="gene ID" value="Daci_5561"/>
    </dbReference>
    <dbReference type="GeneID" id="60689914"/>
    <dbReference type="KEGG" id="dac:Daci_5561"/>
    <dbReference type="eggNOG" id="COG1788">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_019942_2_1_4"/>
    <dbReference type="OMA" id="HDGATVM"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008260">
        <property type="term" value="F:3-oxoacid CoA-transferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012792">
        <property type="entry name" value="3-oxoacid_CoA-transf_A"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004165">
        <property type="entry name" value="CoA_trans_fam_I"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004163">
        <property type="entry name" value="CoA_transf_BS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037171">
        <property type="entry name" value="NagB/RpiA_transferase-like"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR13707">
        <property type="entry name" value="PTHR13707"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01144">
        <property type="entry name" value="CoA_trans"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00882">
        <property type="entry name" value="CoA_trans"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF100950">
        <property type="entry name" value="SSF100950"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR02429">
        <property type="entry name" value="pcaI_scoA_fam"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01273">
        <property type="entry name" value="COA_TRANSF_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 3" id="KW-0808">Transferase</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00005612"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ABX38190.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="233" mass="24699" checksum="6BF72E166C50F6A8" modified="2008-01-15" version="1">MINKITDTIAEALSGVQDGSTVLIGGFGTSGNPTELIDGLIAQGARELTVVNNNAGNGDQGLAALLKSGQVRKIICSFPRQVDSWVFDDLYRSGKIELELVPQGNLAERLRAAGAGIGGFFCPTAYGTELANGKETREINGKHYVLEHPIHGDVALVKAEKGDRWGNLTYRMSARNFGPVMATAAKHTIATVHEIVELGALDPEAVVTPGIYVSQIVKIDRVATQAGGFKKTA</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-05-25" version="75" xmlns="http://uniprot.org/uniprot">
    <accession>A9BXJ9</accession>
    <name>A9BXJ9_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Short-chain dehydrogenase/reductase SDR</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Daci_5646</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="2" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX38275.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012207444.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_5646"/>
    <dbReference type="EnsemblBacteria" id="ABX38275">
        <property type="protein sequence ID" value="ABX38275"/>
        <property type="gene ID" value="Daci_5646"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_5646"/>
    <dbReference type="eggNOG" id="COG1028">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_010194_1_2_4"/>
    <dbReference type="OMA" id="VGQRAWP"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016491">
        <property type="term" value="F:oxidoreductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036291">
        <property type="entry name" value="NAD(P)-bd_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020904">
        <property type="entry name" value="Sc_DH/Rdtase_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002347">
        <property type="entry name" value="SDR_fam"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00081">
        <property type="entry name" value="GDHRDH"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00080">
        <property type="entry name" value="SDRFAMILY"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51735">
        <property type="entry name" value="SSF51735"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00061">
        <property type="entry name" value="ADH_SHORT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ABX38275.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="256" mass="26385" checksum="001E86A79BF18D61" modified="2008-01-15" version="1">MTTISESRVALVTGGAKGIGAEVCARLAVLGHHVLVADLDVDAATATALELSAAGGRATALRLDVGKPEAIATAFEQVEREHGRCDILVNSAGIAKVFPFIDFPLDNFVATMNVNVTGTLLCAQAAARLMVKQGWGRIVNIASVAGMRAVGSGRTAYGTSKGAVIALTRQMAVELAEHGITANAVAPGPVDTPMTQALHTAQFRAEYSKAIPMNRYGTCGEIASAVTYLVSEDARYVTGIAMPVDGGFLASGARGI</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="63" xmlns="http://uniprot.org/uniprot">
    <accession>A9BXP7</accession>
    <name>A9BXP7_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Daci_5695</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="2" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX38323.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012207492.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_5695"/>
    <dbReference type="PRIDE" id="A9BXP7"/>
    <dbReference type="EnsemblBacteria" id="ABX38323">
        <property type="protein sequence ID" value="ABX38323"/>
        <property type="gene ID" value="Daci_5695"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_5695"/>
    <dbReference type="eggNOG" id="COG3149">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_127473_0_0_4"/>
    <dbReference type="OMA" id="WWVALAP"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015627">
        <property type="term" value="C:type II protein secretion system complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015628">
        <property type="term" value="P:protein secretion by the type II secretion system"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007690">
        <property type="entry name" value="T2SS_GspM"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04612">
        <property type="entry name" value="T2SSM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ABX38323.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="186" mass="19675" checksum="265EED969D31465B" modified="2008-01-15" version="1">MNMRTSRQSLAPLRARWNALAPREQNMTLLAGGVVALALLWWVALAPALHSLRTAPERHAQADRQLRQMQLLQAEAEQLRGNARPVVGDAKALLQSSLSAELGASAQLNWMGDRAQITLKAAPAAALARWLAQVRSNTHAVPAEMKLARSASASTAAASGAAGAADAVRWDGSLALDLPVDPSRAP</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="86" xmlns="http://uniprot.org/uniprot">
    <accession>A9BXZ9</accession>
    <name>A9BXZ9_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="7">D,D-heptose 1,7-bisphosphate phosphatase</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="8" type="ordered locus">Daci_1290</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="9" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </cofactor>
    </comment>
    <comment type="subunit">
        <text evidence="4">Monomer.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="2">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="3">Belongs to the GmhB family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX33934.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012203220.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_1290"/>
    <dbReference type="PRIDE" id="A9BXZ9"/>
    <dbReference type="EnsemblBacteria" id="ABX33934">
        <property type="protein sequence ID" value="ABX33934"/>
        <property type="gene ID" value="Daci_1290"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_1290"/>
    <dbReference type="eggNOG" id="COG0241">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_085077_2_0_4"/>
    <dbReference type="OMA" id="EHQICLE"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016791">
        <property type="term" value="F:phosphatase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005975">
        <property type="term" value="P:carbohydrate metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.1000">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036412">
        <property type="entry name" value="HAD-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006549">
        <property type="entry name" value="HAD-SF_hydro_IIIA"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023214">
        <property type="entry name" value="HAD_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004446">
        <property type="entry name" value="Heptose_bisP_phosphatase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006543">
        <property type="entry name" value="Histidinol-phos"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013954">
        <property type="entry name" value="PNK3P"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR42891">
        <property type="entry name" value="PTHR42891"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08645">
        <property type="entry name" value="PNK3P"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56784">
        <property type="entry name" value="SSF56784"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01662">
        <property type="entry name" value="HAD-SF-IIIA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01656">
        <property type="entry name" value="Histidinol-ppas"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="6" id="KW-0119">Carbohydrate metabolism</keyword>
    <keyword evidence="5" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001946"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00004496"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00005628"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00011245"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022490"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023277"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00031828"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="ABX33934.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="189" mass="19674" checksum="6D18A5688B9D04D0" modified="2008-01-15" version="1">MKIAILDRDGTLNQIGEEGFIGSAEAWKAQRGALEAVARLNRAGWHVVVATNQPGLGRGLFDVTELNAVHARMHREMAAAGARVDAVFYCPHAPDEECHCRKPGTALFEQIAERFGVEGHQLWVIGSCVAHLQAGAAMGARLHLVCTGASAGVSLDGALPPGLPPGTQRHASLAALADALVPADAAPAP</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-05-25" version="52" xmlns="http://uniprot.org/uniprot">
    <accession>A9BY34</accession>
    <name>A9BY34_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Mor domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_1325</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX33969.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012203255.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="ABX33969">
        <property type="protein sequence ID" value="ABX33969"/>
        <property type="gene ID" value="Daci_1325"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_1325"/>
    <dbReference type="eggNOG" id="COG5566">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_1568169_0_0_4"/>
    <dbReference type="OMA" id="MLVEHIG"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009057">
        <property type="entry name" value="Homeobox-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014875">
        <property type="entry name" value="Mor_transcription_activator"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08765">
        <property type="entry name" value="Mor"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46689">
        <property type="entry name" value="SSF46689"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Mor" evidence="1">
        <location>
            <begin position="85"/>
            <end position="167"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF08765"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX33969.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="170" mass="18382" checksum="22C69523F14BAB28" modified="2008-01-15" version="1">MHSEHHPAPAFQGFRPAALPPAIGMHTPASAASHPHHGTCSDLLPPLLQDFERLIGLQPTMTLVQRWGGLRIYIPTPDKVTAEHPYAATIGVQALLQLAREYGGLPHFQLPRAARALQALRNQRIAADYATDKTARQLAAEHGITEGQVGRIVAALGVTAPARRRRNLVG</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="39" xmlns="http://uniprot.org/uniprot">
    <accession>A9BYQ0</accession>
    <name>A9BYQ0_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Daci_1953</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="2" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX34593.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012203878.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_1953"/>
    <dbReference type="PRIDE" id="A9BYQ0"/>
    <dbReference type="EnsemblBacteria" id="ABX34593">
        <property type="protein sequence ID" value="ABX34593"/>
        <property type="gene ID" value="Daci_1953"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_1953"/>
    <dbReference type="eggNOG" id="ENOG502ZEJD">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_504186_0_0_4"/>
    <dbReference type="OMA" id="SICDERV"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ABX34593.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="514" mass="56706" checksum="B4F50F799465A978" modified="2008-01-15" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="57" xmlns="http://uniprot.org/uniprot">
    <accession>A9BYX2</accession>
    <name>A9BYX2_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="3">YceI family protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Daci_2227</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="4" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX34867.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012204150.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_2227"/>
    <dbReference type="PRIDE" id="A9BYX2"/>
    <dbReference type="EnsemblBacteria" id="ABX34867">
        <property type="protein sequence ID" value="ABX34867"/>
        <property type="gene ID" value="Daci_2227"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_2227"/>
    <dbReference type="eggNOG" id="COG2353">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_071003_5_1_4"/>
    <dbReference type="OMA" id="FPQATFQ"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.128.110">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007372">
        <property type="entry name" value="Lipid/polyisoprenoid-bd_YceI"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036761">
        <property type="entry name" value="TTHA0802/YceI-like_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04264">
        <property type="entry name" value="YceI"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00867">
        <property type="entry name" value="YceI"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF101874">
        <property type="entry name" value="SSF101874"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="1">
        <location>
            <begin position="1"/>
            <end position="24"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5002732669" evidence="1">
        <location>
            <begin position="25"/>
            <end position="190"/>
        </location>
    </feature>
    <feature type="domain" description="YceI" evidence="2">
        <location>
            <begin position="25"/>
            <end position="185"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="SMART" id="SM00867"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ABX34867.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="190" mass="20068" checksum="DBFDAADC8BB0FA42" modified="2008-01-15" version="1">MRFSSTLTSIALAAAALASQAALAEQKLVPAQSAVNFTAKQMGVPLQGHFKKFDAQVQFDTAKPDTSKIRFTVDTGSATMGAKETDAELPKADWFNVAKFPQAVFDSTAVKALGGGKYQVDGKLSIKGQVQNVSIPVQLAQSGTTTTATGTLPLKRLQFKIGEGEWGDTSMVADEVQVQFKLALTGVGKL</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="59" xmlns="http://uniprot.org/uniprot">
    <accession>A9BYZ7</accession>
    <name>A9BYZ7_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">VWA containing CoxE family protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_2252</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX34892.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012204175.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_2252"/>
    <dbReference type="PRIDE" id="A9BYZ7"/>
    <dbReference type="EnsemblBacteria" id="ABX34892">
        <property type="protein sequence ID" value="ABX34892"/>
        <property type="gene ID" value="Daci_2252"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_2252"/>
    <dbReference type="eggNOG" id="COG3552">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_042261_0_1_4"/>
    <dbReference type="OMA" id="DFYWTLH"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.410">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011195">
        <property type="entry name" value="UCP010256"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008912">
        <property type="entry name" value="Uncharacterised_CoxE"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036465">
        <property type="entry name" value="vWFA_dom_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF05762">
        <property type="entry name" value="VWA_CoxE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF010256">
        <property type="entry name" value="CoxE_vWa"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53300">
        <property type="entry name" value="SSF53300"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="21"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="118"/>
            <end position="142"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX34892.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="424" mass="45879" checksum="7620352F9201FF38" modified="2008-01-15" version="1">MTAGAAGTAGAAGAAGAADGGGRTSWLGDARSGKLAGNLVGFARALRRAGVPVDGGRMALAQQALPLVGLAREDMAAALEAVFVSNAQDRAVFRELFDAYFRNPDVARQLLAQLLPQAPRPSAPRHRPRVQEALSPRQAGEGRAAVDEELKLDAAMTASERHRLRHADFNQLSASEYLLVQRLARDIALPLPRYRSRRTRTGQRGAVPDWAASLRAASHHGGEMLQLLRRERRRLPLPWLALVDVSGSMERYARLLLAFLHAATSTQRHAGLRRQVFSFGTELRNLGPAFAQADADAMLERANAAIADFGGGTRLGSSLGELRRLHARHRVSGLVGRRTLVLIISDGLDTGDAAELDRELAWLRRHSARLLWLNPLLRFDGYAPLAQGAAVLHRHAHAMLAVHNLESLQQLAGHLARLLAAPGR</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="97" xmlns="http://uniprot.org/uniprot">
    <accession>A9BZ55</accession>
    <name>A9BZ55_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="6">Two component transcriptional regulator, winged helix family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ordered locus">Daci_2517</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="7" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX35155.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012204436.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_2517"/>
    <dbReference type="PRIDE" id="A9BZ55"/>
    <dbReference type="EnsemblBacteria" id="ABX35155">
        <property type="protein sequence ID" value="ABX35155"/>
        <property type="gene ID" value="Daci_2517"/>
    </dbReference>
    <dbReference type="GeneID" id="60686889"/>
    <dbReference type="KEGG" id="dac:Daci_2517"/>
    <dbReference type="eggNOG" id="COG0745">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_000445_30_1_4"/>
    <dbReference type="OMA" id="LMMSARG"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000160">
        <property type="term" value="P:phosphorelay signal transduction system"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006355">
        <property type="term" value="P:regulation of transcription, DNA-templated"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd00383">
        <property type="entry name" value="trans_reg_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011006">
        <property type="entry name" value="CheY-like_superfamily"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001867">
        <property type="entry name" value="OmpR/PhoB-type_DNA-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016032">
        <property type="entry name" value="Sig_transdc_resp-reg_C-effctor"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001789">
        <property type="entry name" value="Sig_transdc_resp-reg_receiver"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR039420">
        <property type="entry name" value="WalR-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR48111">
        <property type="entry name" value="PTHR48111"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00072">
        <property type="entry name" value="Response_reg"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00486">
        <property type="entry name" value="Trans_reg_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00448">
        <property type="entry name" value="REC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00862">
        <property type="entry name" value="Trans_reg_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46894">
        <property type="entry name" value="SSF46894"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52172">
        <property type="entry name" value="SSF52172"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51755">
        <property type="entry name" value="OMPR_PHOB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50110">
        <property type="entry name" value="RESPONSE_REGULATORY"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1 3" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="2" id="KW-0597">Phosphoprotein</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Response regulatory" evidence="4">
        <location>
            <begin position="14"/>
            <end position="128"/>
        </location>
    </feature>
    <feature type="domain" description="OmpR/PhoB-type" evidence="5">
        <location>
            <begin position="141"/>
            <end position="237"/>
        </location>
    </feature>
    <feature type="DNA-binding region" description="OmpR/PhoB-type" evidence="3">
        <location>
            <begin position="141"/>
            <end position="237"/>
        </location>
    </feature>
    <feature type="modified residue" description="4-aspartylphosphate" evidence="2">
        <location>
            <position position="63"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00169"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU01091"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="PROSITE" id="PS50110"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="PROSITE" id="PS51755"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="ABX35155.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="240" mass="26024" checksum="2AD9BB53FE1F780E" modified="2008-01-15" version="1">MACIAPGANVRAMQLLLVEDDNAMRTTLQRTLIRRGIQVETAADGPSALAQWLVREPDAVVLDLSLPGLDGLQVLERARGQGLRTPVLILTARGTVGDRVLGLNAGADDYLAKPFDLDELEARLRALLRRSSDSFAPKPPPETIAMGALRYDKTSGAIHRDGEIMELTPRELALMHALLARPGHAVAKERLFALVFPGESDVQYEAVEVVAYRLRKKLSGTGVQLVTLRGLGYLLKAESA</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="94" xmlns="http://uniprot.org/uniprot">
    <accession>A9BZ68</accession>
    <name>A9BZ68_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="7">Putative sigma54 specific transcriptional regulator</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ordered locus">Daci_2530</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
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        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="8" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX35168.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
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    <dbReference type="EnsemblBacteria" id="ABX35168">
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        <property type="gene ID" value="Daci_2530"/>
    </dbReference>
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    <dbReference type="eggNOG" id="COG3829">
        <property type="taxonomic scope" value="Bacteria"/>
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    <dbReference type="HOGENOM" id="CLU_000445_8_12_4"/>
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    </dbReference>
    <dbReference type="GO" id="GO:0005524">
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    </dbReference>
    <dbReference type="GO" id="GO:0006355">
        <property type="term" value="P:regulation of transcription, DNA-templated"/>
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        <property type="match status" value="1"/>
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        <property type="match status" value="1"/>
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        <property type="entry name" value="AAA+_ATPase"/>
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        <property type="entry name" value="Homeobox-like_sf"/>
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        <property type="entry name" value="HTH_Fis"/>
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        <property type="entry name" value="P-loop_NTPase"/>
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        <property type="entry name" value="PAS"/>
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        <property type="entry name" value="PAS-like_dom_sf"/>
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        <property type="entry name" value="Sigma_54_int"/>
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        <property type="entry name" value="Sigma_54_int_dom_ATP-bd_1"/>
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    </dbReference>
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        <property type="match status" value="1"/>
    </dbReference>
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        <property type="entry name" value="Sigma54_activat"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00382">
        <property type="entry name" value="AAA"/>
        <property type="match status" value="1"/>
    </dbReference>
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        <property type="entry name" value="SSF46689"/>
        <property type="match status" value="1"/>
    </dbReference>
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        <property type="entry name" value="SSF52540"/>
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    </dbReference>
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    </dbReference>
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    <keyword evidence="3" id="KW-0805">Transcription regulation</keyword>
    <feature type="domain" description="Sigma-54 factor interaction" evidence="6">
        <location>
            <begin position="180"/>
            <end position="410"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="5">
        <location>
            <begin position="429"/>
            <end position="456"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
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    </evidence>
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        </source>
    </evidence>
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    </evidence>
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        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
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    </evidence>
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        <source>
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        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="ABX35168.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="510" mass="55475" checksum="02692954BC3B7E6A" modified="2008-01-15" version="1">MPPTPTLVQPLPLDADGILALAARSMFQLFSTMSQGMFLADRAGRIVWVNEGYQRFLPDLGVASVDDFLGHMVEDVIPNTRMRRVLETGEPVLIDLLTNRAGTFVVSRIPLKDDAGAVIGAIGIVLFDQPETTLQPLISKFAVLQRDLDEARRELAAQRNRSLRVAVQGERRAKYSFASFVGSSPAAVEVKRQARRAAQSLSPVLLLGETGTGKELLAHAIHAASARTGGPFVTVNIAAVPDALLEAEFFGVAPGAYTGADRKPRDGKFRLADGGTLFLDEIGDMPLNLQAKLLRALQEGEIEPLGSNQLVRFDVRVVAATSRDLPQMVRDGRFREDLFYRLHVLPIRVPPLRERRRDIPALVEVLSEELALRNDMPPPELLPDALALLAGQTWRGNIRELRNVLEQAAMRSEDTAINAEQLREVLRSSGVEPAAPAPGPETALAPSPAHNSPADTDLLRPLAQQVAELERKAITATLAANSGNKLATARQLGISRATLYDRMAVLELQG</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="58" xmlns="http://uniprot.org/uniprot">
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    <organism evidence="2 3">
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        <lineage>
            <taxon>Bacteria</taxon>
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            <taxon>Betaproteobacteria</taxon>
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    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
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                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
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            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX35521.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012204731.1">
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        <property type="gene ID" value="Daci_2883"/>
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    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
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        <property type="entry name" value="N_methyl_site"/>
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        <property type="entry name" value="N_methyl"/>
        <property type="match status" value="1"/>
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    <dbReference type="TIGRFAMs" id="TIGR02532">
        <property type="entry name" value="IV_pilin_GFxxxE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00409">
        <property type="entry name" value="PROKAR_NTER_METHYL"/>
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    </dbReference>
    <proteinExistence type="predicted"/>
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    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="12"/>
            <end position="33"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX35521.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="264" mass="27843" checksum="ACF368E059DC3F0E" modified="2008-01-15" version="1">MRMPSQAGMSLVEIMVALAIGLFLVLIATTIYMQGLSSFGFRVGQSENLGNSRLALAVLDSEFSKAGYRRDPSQAMFDAFPADSSPHPNGCQFAQGQALYAADVQSICLRFQPRDAAETDCAGTPANLGAAGPYDAPAPATGMFAEKYTVESGVLVCRAAQEVVPLADGVRAVHFEFGIDRQTAPGAIRRVDAFAATLPGQQEAIRSLRLALLLESSGKVTQGMASTVCERWAQLGGAPDRCDANAGPLLQLATGTLTLRNLMP</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="45" xmlns="http://uniprot.org/uniprot">
    <accession>A9BZI2</accession>
    <name>A9BZI2_DELAS</name>
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        <submittedName>
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        <name evidence="2" type="ordered locus">Daci_2944</name>
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    <organism evidence="2 3">
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        <lineage>
            <taxon>Bacteria</taxon>
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            <taxon>Betaproteobacteria</taxon>
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        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
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                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX35582.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_2944"/>
    <dbReference type="PRIDE" id="A9BZI2"/>
    <dbReference type="EnsemblBacteria" id="ABX35582">
        <property type="protein sequence ID" value="ABX35582"/>
        <property type="gene ID" value="Daci_2944"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_2944"/>
    <dbReference type="eggNOG" id="ENOG502Z7K2">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_379858_0_0_4"/>
    <dbReference type="OMA" id="CLETPQA"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="1">
        <location>
            <begin position="1"/>
            <end position="34"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5002732693" evidence="1">
        <location>
            <begin position="35"/>
            <end position="694"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX35582.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="694" mass="72791" checksum="57F0F06D15D7698E" modified="2008-01-15" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="45" xmlns="http://uniprot.org/uniprot">
    <accession>A9C0R8</accession>
    <name>A9C0R8_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">CHAD domain containing protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_5753</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX38381.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012207550.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_5753"/>
    <dbReference type="PRIDE" id="A9C0R8"/>
    <dbReference type="EnsemblBacteria" id="ABX38381">
        <property type="protein sequence ID" value="ABX38381"/>
        <property type="gene ID" value="Daci_5753"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_5753"/>
    <dbReference type="eggNOG" id="COG5607">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_949049_0_0_4"/>
    <dbReference type="OMA" id="GVHQMRI"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.40.20.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007899">
        <property type="entry name" value="CHAD_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038186">
        <property type="entry name" value="CHAD_dom_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF05235">
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        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00880">
        <property type="entry name" value="CHAD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51708">
        <property type="entry name" value="CHAD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="CHAD" evidence="1">
        <location>
            <begin position="11"/>
            <end position="291"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS51708"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX38381.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="291" mass="31992" checksum="D3493D97211906EA" modified="2008-01-15" version="1">MSTPAKQHPDRPDAAGFVRAALTAALAQVQSHLAVLEGGGSDAETIHQLRVALRRLRTVLRECAGLAPGMRAEWDEPLAQAFAQLGTLRDADTLADVVRPLLQAAHAPLCDWQAPQAVQADAAAAVREPPFLQALAEIQALAQAPQAEPSARFARLSAAGTRKYLARRLARLHRQVLRDGRHFDRLPLAQQHRVRKRLKRLRYLADFAREFAPGMWPGKKGRRFAEALVPAQDALGLHNDMAVAAEHFHAEAARDPRAWFAAGYLQARLATSARSSRRALRALARVPGFWL</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="46" xmlns="http://uniprot.org/uniprot">
    <accession>A9C0S9</accession>
    <name>A9C0S9_DELAS</name>
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        <recommendedName>
            <fullName evidence="2">LprI domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Daci_5764</name>
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    <organism evidence="3 4">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
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                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
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            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="4" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX38392.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012207561.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="PRIDE" id="A9C0S9"/>
    <dbReference type="EnsemblBacteria" id="ABX38392">
        <property type="protein sequence ID" value="ABX38392"/>
        <property type="gene ID" value="Daci_5764"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_5764"/>
    <dbReference type="HOGENOM" id="CLU_154427_0_0_4"/>
    <dbReference type="OMA" id="YARSACE"/>
    <dbReference type="Proteomes" id="UP000000784">
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    </dbReference>
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        <property type="entry name" value="LprI_N"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07007">
        <property type="entry name" value="LprI"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="1">
        <location>
            <begin position="1"/>
            <end position="26"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5002733239" description="LprI domain-containing protein" evidence="1">
        <location>
            <begin position="27"/>
            <end position="137"/>
        </location>
    </feature>
    <feature type="domain" description="LprI" evidence="2">
        <location>
            <begin position="35"/>
            <end position="126"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF07007"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ABX38392.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="137" mass="15057" checksum="574E67EFEF0511C1" modified="2008-01-15" version="1">MHQALASLLAPLACAALLCASPVAWAANPTSSGNCEESSTNMSEVRACLHEQNVAMVKAAYVSLSLKLKARMPQASEELEVAQRNWVQYARSACEFLSEFNSASFAKDDARANCWSDFARARAKQLKSWEMQLDKKP</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="50" xmlns="http://uniprot.org/uniprot">
    <accession>A9C0X2</accession>
    <name>A9C0X2_DELAS</name>
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        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
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    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_5807</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
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            <taxon>Comamonadaceae</taxon>
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    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
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                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
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            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX38435.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012207604.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_5807"/>
    <dbReference type="PRIDE" id="A9C0X2"/>
    <dbReference type="EnsemblBacteria" id="ABX38435">
        <property type="protein sequence ID" value="ABX38435"/>
        <property type="gene ID" value="Daci_5807"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_5807"/>
    <dbReference type="eggNOG" id="COG3694">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_071040_1_0_4"/>
    <dbReference type="OMA" id="WDFNERY"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010390">
        <property type="entry name" value="DUF990"/>
    </dbReference>
    <dbReference type="Pfam" id="PF06182">
        <property type="entry name" value="ABC2_membrane_6"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
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    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
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        <location>
            <begin position="33"/>
            <end position="51"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="123"/>
            <end position="142"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="148"/>
            <end position="169"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="209"/>
            <end position="228"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="234"/>
            <end position="255"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX38435.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="271" mass="29148" checksum="09DB1B180F79EEA9" modified="2008-01-15" version="1">MAKQKGSLSMFLRLALASLGGQARYPASALMLTLGQFLVTGIEVIAVWALFHRFGEVQGWRIGEVAVFYGLVNCMFALADALGRGFDVLGTQFLRTGAFDRLLLRPRPVWLQLMGHDVRISRLGRLLQGLLVLGFATAQGAVAWTPQAVAVALFAVAGGVALFLGILVLQGALSFWTVESLEAANVLSYGSVEAAQYPLALYAQWFRRLLTFAVPLACVAYYPALAVLGKPDPLGAPAWLGWVSPLAGFAFLWLASGAWRMGVRHYASTGS</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="60" xmlns="http://uniprot.org/uniprot">
    <accession>A9C1G0</accession>
    <name>A9C1G0_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Benzoate transporter</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_5995</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
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            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX38623.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012207792.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_5995"/>
    <dbReference type="PRIDE" id="A9C1G0"/>
    <dbReference type="EnsemblBacteria" id="ABX38623">
        <property type="protein sequence ID" value="ABX38623"/>
        <property type="gene ID" value="Daci_5995"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_5995"/>
    <dbReference type="eggNOG" id="COG3135">
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    </dbReference>
    <dbReference type="HOGENOM" id="CLU_041268_2_0_4"/>
    <dbReference type="OMA" id="MTSQNMP"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0042925">
        <property type="term" value="F:benzoate transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004711">
        <property type="entry name" value="Benzoate_Transporter"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30199">
        <property type="entry name" value="PTHR30199"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03594">
        <property type="entry name" value="BenE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00843">
        <property type="entry name" value="benE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="12"/>
            <end position="34"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="46"/>
            <end position="65"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="72"/>
            <end position="91"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="97"/>
            <end position="116"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="123"/>
            <end position="140"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="146"/>
            <end position="164"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="171"/>
            <end position="189"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="209"/>
            <end position="228"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="249"/>
            <end position="273"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="293"/>
            <end position="315"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="322"/>
            <end position="345"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="351"/>
            <end position="384"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX38623.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="393" mass="40873" checksum="495CA5677FFD01CC" modified="2008-01-15" version="1">MRFLRDLSPSAFAAGFVAVLVGFTSSVALVFQAAQAFHATPEQITSWVWALGLGMGLCSLLPSLILRMPVMVAWSTPGAAVLATAGLAGGFSMGEAVGAFIISAGLIILVGVTGWFERVMNRIPMEIAAALLAGVLANFGMQAFAAARHALPLVLVMLLTYLLSRRLAPRYAVIATLAVSIAWVALTGQMQWSAVHAGLAWPVFTMPEFSVPALVSLALPLFVVTMASQNLPGVAVIRATGYNLPISRIISMTGIATLVLAPFGGYALNLSAITAAICMGPEAHEDKSRRYTAAAVCGLFYIVIGIFGAVVTGLLTAFPRELVVCIAGLALLGSIGSGLATALQGEEHREAALITFLVTLSGVVIAGVGSAFWGVVAGSLALFVQHYRRARAS</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-01-19" version="64" xmlns="http://uniprot.org/uniprot">
    <accession>A9C1N8</accession>
    <name>A9C1N8_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Transcriptional regulator, XRE family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_2585</name>
        <name evidence="3" type="ordered locus">Daci_2619</name>
    </gene>
    <organism evidence="2 4">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 4" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
            <strain evidence="2">SPH-1</strain>
        </source>
    </reference>
    <reference evidence="4" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="2" key="3">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX35223.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX35257.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012204502.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_2585"/>
    <dbReference type="EnsemblBacteria" id="ABX35223">
        <property type="protein sequence ID" value="ABX35223"/>
        <property type="gene ID" value="Daci_2585"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="ABX35257">
        <property type="protein sequence ID" value="ABX35257"/>
        <property type="gene ID" value="Daci_2619"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_2585"/>
    <dbReference type="KEGG" id="dac:Daci_2619"/>
    <dbReference type="eggNOG" id="COG1396">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_066192_23_4_4"/>
    <dbReference type="OMA" id="RAPKADY"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd00093">
        <property type="entry name" value="HTH_XRE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.260.40">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001387">
        <property type="entry name" value="Cro/C1-type_HTH"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010982">
        <property type="entry name" value="Lambda_DNA-bd_dom_sf"/>
    </dbReference>
    <dbReference type="SMART" id="SM00530">
        <property type="entry name" value="HTH_XRE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47413">
        <property type="entry name" value="SSF47413"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50943">
        <property type="entry name" value="HTH_CROC1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HTH cro/C1-type" evidence="1">
        <location>
            <begin position="13"/>
            <end position="66"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS50943"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX35223.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ABX35257.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="110" mass="11839" checksum="A37FB12BC9A344BE" modified="2008-01-15" version="1">MNRRNFDHIGERLRQERLRLDVAQLAMADACDVSRGTLATWEKGEQSPNAAALAVMAGLGVDVLYVVTGQHANASVQTLAPDERELLDCYGRADDSGRAAIMAVATLAAR</sequence>
</entry>
<entry dataset="Swiss-Prot" created="2009-03-24" modified="2022-08-03" version="84" xmlns="http://uniprot.org/uniprot">
    <accession>A9C1U9</accession>
    <name>CLPX_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">ATP-dependent Clp protease ATP-binding subunit ClpX</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="1" type="primary">clpX</name>
        <name type="ordered locus">Daci_2646</name>
    </gene>
    <organism>
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference key="1">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain>DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="1">ATP-dependent specificity component of the Clp protease. It directs the protease to specific substrates. Can perform chaperone functions in the absence of ClpP.</text>
    </comment>
    <comment type="subunit">
        <text evidence="1">Component of the ClpX-ClpP complex. Forms a hexameric ring that, in the presence of ATP, binds to fourteen ClpP subunits assembled into a disk-like structure with a central cavity, resembling the structure of eukaryotic proteasomes.</text>
    </comment>
    <comment type="similarity">
        <text evidence="1">Belongs to the ClpX chaperone family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX35284.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012204530.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A9C1U9"/>
    <dbReference type="SMR" id="A9C1U9"/>
    <dbReference type="STRING" id="398578.Daci_2646"/>
    <dbReference type="PRIDE" id="A9C1U9"/>
    <dbReference type="EnsemblBacteria" id="ABX35284">
        <property type="protein sequence ID" value="ABX35284"/>
        <property type="gene ID" value="Daci_2646"/>
    </dbReference>
    <dbReference type="GeneID" id="60686987"/>
    <dbReference type="KEGG" id="dac:Daci_2646"/>
    <dbReference type="eggNOG" id="COG1219">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_014218_8_2_4"/>
    <dbReference type="OMA" id="HYKRVQA"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016887">
        <property type="term" value="F:ATP hydrolysis activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0140662">
        <property type="term" value="F:ATP-dependent protein folding chaperone"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046983">
        <property type="term" value="F:protein dimerization activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051082">
        <property type="term" value="F:unfolded protein binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008270">
        <property type="term" value="F:zinc ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="6.20.220.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00175">
        <property type="entry name" value="ClpX"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003593">
        <property type="entry name" value="AAA+_ATPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003959">
        <property type="entry name" value="ATPase_AAA_core"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019489">
        <property type="entry name" value="Clp_ATPase_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004487">
        <property type="entry name" value="Clp_protease_ATP-bd_su_ClpX"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR046425">
        <property type="entry name" value="ClpX_bact"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010603">
        <property type="entry name" value="Znf_CppX_C4"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038366">
        <property type="entry name" value="Znf_CppX_C4_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07724">
        <property type="entry name" value="AAA_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF10431">
        <property type="entry name" value="ClpB_D2-small"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF06689">
        <property type="entry name" value="zf-C4_ClpX"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00382">
        <property type="entry name" value="AAA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM01086">
        <property type="entry name" value="ClpB_D2-small"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00994">
        <property type="entry name" value="zf-C4_ClpX"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00382">
        <property type="entry name" value="clpX"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51902">
        <property type="entry name" value="CLPX_ZB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword id="KW-0067">ATP-binding</keyword>
    <keyword id="KW-0143">Chaperone</keyword>
    <keyword id="KW-0479">Metal-binding</keyword>
    <keyword id="KW-0547">Nucleotide-binding</keyword>
    <keyword id="KW-1185">Reference proteome</keyword>
    <keyword id="KW-0862">Zinc</keyword>
    <feature type="chain" id="PRO_1000097948" description="ATP-dependent Clp protease ATP-binding subunit ClpX">
        <location>
            <begin position="1"/>
            <end position="420"/>
        </location>
    </feature>
    <feature type="domain" description="ClpX-type ZB" evidence="2">
        <location>
            <begin position="3"/>
            <end position="56"/>
        </location>
    </feature>
    <feature type="binding site" evidence="2">
        <location>
            <position position="15"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="2">
        <location>
            <position position="18"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="2">
        <location>
            <position position="37"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="2">
        <location>
            <position position="40"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <begin position="122"/>
            <end position="129"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000255" key="1">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00175"/>
        </source>
    </evidence>
    <evidence type="ECO:0000255" key="2">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU01250"/>
        </source>
    </evidence>
    <sequence length="420" mass="45906" checksum="05C5AD1946B98CFA" modified="2008-01-15" version="1">MAEKKGSSSEKNLYCTFCGKSQHEVKKLIAGPSVFICDECIDLCNEIIRDEQPSTEAKDGRGDLPTPAEIKANLDNYVIGQDLPKRTLAVAVYNHYKRLRHKDKAGKDEIELAKSNILLIGPTGSGKTLLAQTLARMLNVPFVMADATTLTEAGYVGEDVENIIQKLLQSCEYDVERAQRGIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTMASVPPQGGRKHPNQDFLQIDTTNILFICGGAFAGLEKVIENRTEASGIGFGATVKSKKQRSISEVFQEIEPEDLIKFGIIPELVGRMPVVTALAELGEDALVQILTEPKNALVKQYSKLLAMEGVELEIRPAALKAIARKALARKTGARGLRSILEQSLIGTMYELPNADNVEKVVVDESTIEDGKAPLLVYREAAKKA</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="47" xmlns="http://uniprot.org/uniprot">
    <accession>A9C1V2</accession>
    <name>A9C1V2_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_2649</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX35287.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_2649"/>
    <dbReference type="PRIDE" id="A9C1V2"/>
    <dbReference type="EnsemblBacteria" id="ABX35287">
        <property type="protein sequence ID" value="ABX35287"/>
        <property type="gene ID" value="Daci_2649"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_2649"/>
    <dbReference type="eggNOG" id="ENOG502Z7VF">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_1304054_0_0_4"/>
    <dbReference type="OMA" id="LMERHFD"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="211"/>
            <end position="233"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX35287.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="233" mass="25967" checksum="0AA29C493CC92CCD" modified="2008-01-15" version="1">MRSVDVDRGTWCGVTGVAKLIPDENMSNYNAPFEIHVHGQVLLRPDTTYEQLQEALGPLWKYAGARSLADGAGSVYEEEPGIQFDTKERLLQVCWTVRGDEDFRQSLDDMCMGINELAEQGAAIEVTFYDTEFDEEEESEEAESRDDFVMLFVGPTPAAIMQVQRDLLVQDVVNLMERHFDGSELGGVVQEIDKLFSQRFDALVSSLEIGKPPRGMGGSGSGHGGNRRPRHLH</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="58" xmlns="http://uniprot.org/uniprot">
    <accession>A9C260</accession>
    <name>A9C260_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">TSPc domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Daci_3058</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="4" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX35696.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_3058"/>
    <dbReference type="PRIDE" id="A9C260"/>
    <dbReference type="EnsemblBacteria" id="ABX35696">
        <property type="protein sequence ID" value="ABX35696"/>
        <property type="gene ID" value="Daci_3058"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_3058"/>
    <dbReference type="eggNOG" id="COG0793">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_042250_0_0_4"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008236">
        <property type="term" value="F:serine-type peptidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006508">
        <property type="term" value="P:proteolysis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029045">
        <property type="entry name" value="ClpP/crotonase-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005151">
        <property type="entry name" value="Tail-specific_protease"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03572">
        <property type="entry name" value="Peptidase_S41"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52096">
        <property type="entry name" value="SSF52096"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="1">
        <location>
            <begin position="1"/>
            <end position="23"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5002732773" description="TSPc domain-containing protein" evidence="1">
        <location>
            <begin position="24"/>
            <end position="503"/>
        </location>
    </feature>
    <feature type="domain" description="TSPc" evidence="2">
        <location>
            <begin position="272"/>
            <end position="434"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF03572"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ABX35696.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="503" mass="56722" checksum="D89286EBBD29A8F5" modified="2008-01-15" version="1">MTKAIFPLIAIIMQFILNPSAHAHPSEMVTHKNSMHKTIEEWDKVAIRDIKKVHDIISETHPAKLDEENLEFNHWLEFGYQKSLLLAGRSRSKEQAWAAVNYYLTGFMDEHLTAGRVLSQSSHLYWAGFVMSYKNGRYFATSKANVWPVDLPQIGDEIISCDGVDITEILRSKVAPFVDRRTYLDNTLEKLSRYMTLEQSHHPLWDPLRPMSCIIQKPDGERHEISLLWKKQTDNTKIGRQPAPQQGMHQIKKGVYWIHASNFMLDAEAFIKFESLLNEVRALGSADAVVLDTRGNNGGDSSVGSRLLRALLKSNTPLLNEARAYWRVSPLAMETLKAHSTSALQIEGRESTRYKWLDGLSESMATAARRGENFIEQAHGSAIDDEDTGQEVPPFQGKLILITDSYCNSACLDFVDEVMSVPGALHVGSTTNADTRYIDVGSVMLPSGLKLWVPLKVWVGRRRQDNVPYVPQIKYHQDLDDTKAVQDWVLGSVLPVASRIGKP</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="84" xmlns="http://uniprot.org/uniprot">
    <accession>A9C289</accession>
    <name>A9C289_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="8">Peptidoglycan-associated protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="8" type="primary">pal</name>
        <name evidence="13" type="ordered locus">Daci_3395</name>
    </gene>
    <organism evidence="13 14">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="13 14" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="14">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="14" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="14">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="8">Part of the Tol-Pal system, which plays a role in outer membrane invagination during cell division and is important for maintaining outer membrane integrity.</text>
    </comment>
    <comment type="subunit">
        <text evidence="8">The Tol-Pal system is composed of five core proteins: the inner membrane proteins TolA, TolQ and TolR, the periplasmic protein TolB and the outer membrane protein Pal. They form a network linking the inner and outer membranes and the peptidoglycan layer.</text>
    </comment>
    <comment type="similarity">
        <text evidence="8">Belongs to the Pal lipoprotein family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX36033.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012205233.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_3395"/>
    <dbReference type="PRIDE" id="A9C289"/>
    <dbReference type="EnsemblBacteria" id="ABX36033">
        <property type="protein sequence ID" value="ABX36033"/>
        <property type="gene ID" value="Daci_3395"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_3395"/>
    <dbReference type="eggNOG" id="COG2885">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_016890_9_4_4"/>
    <dbReference type="OMA" id="ESNESCW"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009279">
        <property type="term" value="C:cell outer membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0007049">
        <property type="term" value="P:cell cycle"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051301">
        <property type="term" value="P:cell division"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd07185">
        <property type="entry name" value="OmpA_C-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.1330.60">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_02204">
        <property type="entry name" value="Pal"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006664">
        <property type="entry name" value="OMP_bac"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006665">
        <property type="entry name" value="OmpA-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006690">
        <property type="entry name" value="OMPA-like_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036737">
        <property type="entry name" value="OmpA-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR039001">
        <property type="entry name" value="Pal"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014169">
        <property type="entry name" value="Pal_lipo_C"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00691">
        <property type="entry name" value="OmpA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR01021">
        <property type="entry name" value="OMPADOMAIN"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF103088">
        <property type="entry name" value="SSF103088"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR02802">
        <property type="entry name" value="Pal_lipo"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01068">
        <property type="entry name" value="OMPA_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51123">
        <property type="entry name" value="OMPA_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="7 8" id="KW-0131">Cell cycle</keyword>
    <keyword evidence="1 8" id="KW-0132">Cell division</keyword>
    <keyword evidence="5" id="KW-0998">Cell outer membrane</keyword>
    <keyword evidence="6 13" id="KW-0449">Lipoprotein</keyword>
    <keyword evidence="3 9" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-0564">Palmitate</keyword>
    <keyword evidence="14" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 11" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="11">
        <location>
            <begin position="1"/>
            <end position="26"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5002732777" description="Peptidoglycan-associated protein" evidence="11">
        <location>
            <begin position="27"/>
            <end position="180"/>
        </location>
    </feature>
    <feature type="domain" description="OmpA-like" evidence="12">
        <location>
            <begin position="66"/>
            <end position="180"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="10">
        <location>
            <begin position="34"/>
            <end position="54"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="10">
        <location>
            <begin position="154"/>
            <end position="180"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="10">
        <location>
            <begin position="157"/>
            <end position="180"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022618"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022729"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023139"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023237"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023288"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023306"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_02204"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00473"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="12">
        <source>
            <dbReference type="PROSITE" id="PS51123"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="13">
        <source>
            <dbReference type="EMBL" id="ABX36033.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="14">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="180" mass="18753" checksum="A0C636365C7F7A65" modified="2008-01-15" version="1">MITIKRLSLALAVTALMAGCSSGVKLDETPVTDAGATSTGQGSGAGTGSTSQSGISGVDLTGSAADKAGPQGVSRVVYFDFDSYVVKADAQPQIEAHARFLKASSARKVQIEGHTDERGGREYNLALGQKRAEAVRRSLGLLGVSDAQMEAVSYGKEKPAAEGHSEDAYAQNRRAELSYR</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="54" xmlns="http://uniprot.org/uniprot">
    <accession>A9C2E1</accession>
    <name>A9C2E1_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Daci_3449</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="2" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX36085.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_3449"/>
    <dbReference type="PRIDE" id="A9C2E1"/>
    <dbReference type="EnsemblBacteria" id="ABX36085">
        <property type="protein sequence ID" value="ABX36085"/>
        <property type="gene ID" value="Daci_3449"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_3449"/>
    <dbReference type="eggNOG" id="COG3209">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_555202_0_0_4"/>
    <dbReference type="OMA" id="PGFALVW"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013320">
        <property type="entry name" value="ConA-like_dom_sf"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF49899">
        <property type="entry name" value="SSF49899"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ABX36085.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="491" mass="52605" checksum="99ECB596783998BB" modified="2008-01-15" version="1">MATARYWRAIAISTYAAAHLELSAWHLYGAADQRVDSAAALTCTVPTLAGDVSSLQDADVGTSVVFDARSPGFALVWDFGSGSPGSVQSVRFGSADTQGSFLSEFTLQYSEDGISWTWLSTTGRHPWPGPRAMGEVTQVVSGDEHFDKVSLLLQVDGENGSLDFRDKSVPEKPLTVSGDLVVSNAVTFSGLNSIRYGGVGGSVVLNKAEDFDFADLDFTIELWAQVENYRNNTLLGNTGESNANGFLLQFTDVGFLRFYVSSNNSMALDVIGNAYYGLFAKTHVAVSRSGGRVRLFLGGVKCADVPFSGAIPTASGDLNIGGNLNFSGWRFVNGNLGEVRITKGVARYTDSFTPPTDPLPTGSGGGNFDPTPLITRRRTLQYFVVQSSTGESSVETIPANGTFPFMDAEFGGSGRIFGTTKIKGTVSNSPAKSRVVLLRQRDRLLVRQTWSDPDTGAWAFEGLDMRQQYIALAEDAGGNFQAVAAQRLEAV</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="68" xmlns="http://uniprot.org/uniprot">
    <accession>A9C2Q6</accession>
    <name>A9C2Q6_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="11">TonB family protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="11" type="ordered locus">Daci_3773</name>
    </gene>
    <organism evidence="11 12">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="11 12" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="12">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="12" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="12">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Cell inner membrane</location>
            <topology evidence="1">Single-pass membrane protein</topology>
            <orientation evidence="1">Periplasmic side</orientation>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the TonB family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX36405.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_3773"/>
    <dbReference type="PRIDE" id="A9C2Q6"/>
    <dbReference type="EnsemblBacteria" id="ABX36405">
        <property type="protein sequence ID" value="ABX36405"/>
        <property type="gene ID" value="Daci_3773"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_3773"/>
    <dbReference type="eggNOG" id="COG0810">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_033693_0_0_4"/>
    <dbReference type="OMA" id="PHWLHVI"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0055085">
        <property type="term" value="P:transmembrane transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006260">
        <property type="entry name" value="TonB/TolA_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037682">
        <property type="entry name" value="TonB_C"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03544">
        <property type="entry name" value="TonB_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01352">
        <property type="entry name" value="tonB_Cterm"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-0997">Cell inner membrane</keyword>
    <keyword evidence="4" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="8" id="KW-0472">Membrane</keyword>
    <keyword evidence="12" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="6" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="7" id="KW-1133">Transmembrane helix</keyword>
    <keyword evidence="3" id="KW-0813">Transport</keyword>
    <feature type="domain" description="TonB_C" evidence="10">
        <location>
            <begin position="395"/>
            <end position="473"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="9">
        <location>
            <begin position="55"/>
            <end position="99"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="9">
        <location>
            <begin position="324"/>
            <end position="349"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="9">
        <location>
            <begin position="81"/>
            <end position="96"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004383"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00006555"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022448"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022519"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="10">
        <source>
            <dbReference type="Pfam" id="PF03544"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="EMBL" id="ABX36405.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="475" mass="52500" checksum="89C5898F2A1DC1D6" modified="2008-01-15" version="1">MPLPFLARLGLDLNADERAIRRAYARALKEIDQETDLDGFQALRESYQAALAWHAQRRPETAIPPSSSDSKEDAPHSRNSSDAHIDTGNTPSRKADPAYSARTIDHARQIAHALLADLRKKLAAGWPQDRTAVSIWLNEVLKDQRLIDMDARHFFEWGMAALLAEGWQPRKEFLFGPAIDCFGWKQDRGRLAAFGHAGAVVASAIGELEFFDTRPKHVRVAQKELIQGLRESSKPPTSTLLKHRATLRDVVQHYPHWLHVITDTRNAKRWLEWADQIPRWRQRLAPSASSSTSERKGGNFWFGWIFLLVLVLSTLGKISALVNSSGPSVPRHSPPLTTQSFAPPAAATDGTASSFTRIVKDLPASSAAPVPLPLDDDSLKLPPAAELPRHLQAPRLAYPEQAKRLRQEGRVVIKARIDPDGKIRRAEIDQSSSHAILDEAAMAAVLKASFIAAKDSSGASVPSVIKIPIKFELGN</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="63" xmlns="http://uniprot.org/uniprot">
    <accession>A9C2S0</accession>
    <name>A9C2S0_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="3">6-aminohexanoate-dimer hydrolase</fullName>
            <ecNumber evidence="3">3.5.1.46</ecNumber>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Daci_3787</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="4" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EC" id="3.5.1.46" evidence="3"/>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX36419.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012205613.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_3787"/>
    <dbReference type="PRIDE" id="A9C2S0"/>
    <dbReference type="EnsemblBacteria" id="ABX36419">
        <property type="protein sequence ID" value="ABX36419"/>
        <property type="gene ID" value="Daci_3787"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_3787"/>
    <dbReference type="eggNOG" id="COG1680">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_030169_0_1_4"/>
    <dbReference type="OMA" id="HGQRIYI"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0019875">
        <property type="term" value="F:6-aminohexanoate-dimer hydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.710.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001466">
        <property type="entry name" value="Beta-lactam-related"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012338">
        <property type="entry name" value="Beta-lactam/transpept-like"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00144">
        <property type="entry name" value="Beta-lactamase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56601">
        <property type="entry name" value="SSF56601"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="1">
        <location>
            <begin position="1"/>
            <end position="25"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5002733303" evidence="1">
        <location>
            <begin position="26"/>
            <end position="445"/>
        </location>
    </feature>
    <feature type="domain" description="Beta-lactamase" evidence="2">
        <location>
            <begin position="135"/>
            <end position="420"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF00144"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ABX36419.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="445" mass="48031" checksum="90BF3BCB13015E0F" modified="2008-01-15" version="1">MVAAMQLKHFAGALAGSLVFATATAGVTAAKTPSYPDADASDPAKLGWMVGSPPPPDRMLRFDDGSYFQFPAMRWSVSHFRQLMPTVNVSRGLAPAAPLAQALREDIDELRFTPLGASQSMTWRDSLKANYTDGIVVLHKGRVIYERYFGVLKPEGQHGAMSVTKSFVGTLAAMLAAEGQLDPSRRVSEYVPELAASAFGNATVRQLMDMTTGIRFSEDYADPQAEVWAHAAAGNPLPKAKDYTGPRSYYEFLQTVKPEGVHGKAFGYRTANTDALGWVLARVSGQSVADLLSERIWSRLGAEQDAYMSVDSTGTPFAGGGLNLGLRDLARFGEMLRNRGQFNGQQIIPAAAVDDIRRGGDAAAFAKAGYKLLPGWTYRNMWWVTHNAHGAFAARGVHGQTVYIDPKAQMVIARFASHPVAGNAANDPTSLPAYEALGRLLAGER</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-01-19" version="79" xmlns="http://uniprot.org/uniprot">
    <accession>A9C2S4</accession>
    <name>A9C2S4_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="8">Transport system permease protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="8" type="ordered locus">Daci_3791</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="9" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX36423.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012205617.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_3791"/>
    <dbReference type="EnsemblBacteria" id="ABX36423">
        <property type="protein sequence ID" value="ABX36423"/>
        <property type="gene ID" value="Daci_3791"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_3791"/>
    <dbReference type="eggNOG" id="COG0609">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_013016_0_1_4"/>
    <dbReference type="OMA" id="HIVWLIR"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0022857">
        <property type="term" value="F:transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.3470.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037294">
        <property type="entry name" value="ABC_BtuC-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000522">
        <property type="entry name" value="ABC_transptr_permease_BtuC"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30472">
        <property type="entry name" value="PTHR30472"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01032">
        <property type="entry name" value="FecCD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF81345">
        <property type="entry name" value="SSF81345"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="6 7" id="KW-0472">Membrane</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4 7" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="5 7" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="84"/>
            <end position="101"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="113"/>
            <end position="134"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="140"/>
            <end position="160"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="172"/>
            <end position="192"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="219"/>
            <end position="235"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="263"/>
            <end position="289"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="304"/>
            <end position="323"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="332"/>
            <end position="351"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00007935"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="ABX36423.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="361" mass="37559" checksum="6415E12D6F343692" modified="2008-01-15" version="1">MRPTDSRWPRRPGAARLWCLLLFAALLLVMTLAITWGPVDMPAGTVWRIAWSRLLQVLGMQPPPLEGITPQHQQIVWLIRMPRVLLAALVGAGLAVVGTIMQAMVRNPLADPYLLGVSSGASVGAVAVLAFGALASAGMYALTAGAFVGALAATVAVYLLARSQGRIHATRLILGGVAIGYVLAGVTSLITLSSGQRDLANALLTWTLGSLAGTQWEELGIPAAVLAAGMLWLGLQTRPLNALLAGDEAAATLGVDTARLRRALFLAVSLLTGTMVAVSGAIGFVGLIVPHAARMLVGTDHRRVLPVAALAGALLLVLVDLVARTAFAPMELPVGVITSLIGGPFFVWMLVRQPVQGGRGP</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="54" xmlns="http://uniprot.org/uniprot">
    <accession>A9C2S7</accession>
    <name>A9C2S7_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Terminase small subunit</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Daci_4100</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="2" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX36731.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_4100"/>
    <dbReference type="PRIDE" id="A9C2S7"/>
    <dbReference type="EnsemblBacteria" id="ABX36731">
        <property type="protein sequence ID" value="ABX36731"/>
        <property type="gene ID" value="Daci_4100"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_4100"/>
    <dbReference type="eggNOG" id="COG3728">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_064914_2_1_4"/>
    <dbReference type="OMA" id="NEAIMTY"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051276">
        <property type="term" value="P:chromosome organization"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.1400">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038713">
        <property type="entry name" value="Terminase_Gp1_N_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005335">
        <property type="entry name" value="Terminase_ssu"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03592">
        <property type="entry name" value="Terminase_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ABX36731.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="210" mass="22806" checksum="AB86F1C3DDAAEDEF" modified="2008-01-15" version="1">MRSISLGAIDSSLLKLLTDIPMKLTPKQERFVAEYLVDLNATQAAIRSGYSAKTAPEQASRLLSNVKVSEAVQAAMQARSQRTEITQDMVLRELAKIGFSDIRKVVRWGTTELRTTEGKDGEAVTEPYHGLRLVAADEIDDDTAAAIAEVSEGRDGLKVKFHDKKGALVDIGRHLGMFKDRVEHSGPDGGPIPTTPTVIELVAPNVQGKD</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2021-06-02" version="37" xmlns="http://uniprot.org/uniprot">
    <accession>A9C2U6</accession>
    <name>A9C2U6_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Daci_4119</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="2" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX36750.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012205937.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_4119"/>
    <dbReference type="EnsemblBacteria" id="ABX36750">
        <property type="protein sequence ID" value="ABX36750"/>
        <property type="gene ID" value="Daci_4119"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_4119"/>
    <dbReference type="eggNOG" id="ENOG5033ZIH">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_1913491_0_0_4"/>
    <dbReference type="OMA" id="DDAKQAH"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ABX36750.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="132" mass="14478" checksum="571D33963AD9A585" modified="2008-01-15" version="1">MGLSFVNIHGQQISELQLGAMKAEGLEIERKRRAANKADQVSVHKGWRVTGVAPGLLDDARAARERLQAMARKAGGKPIEDFDQVAWQRNAKRSAVRSKLYGLESAAKQCAELASKAGWLDVQIQEIKKVVA</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-01-19" version="55" xmlns="http://uniprot.org/uniprot">
    <accession>A9C2V9</accession>
    <name>A9C2V9_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="1">HNH endonuclease</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Daci_4132</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="2" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX36763.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012205945.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_4132"/>
    <dbReference type="EnsemblBacteria" id="ABX36763">
        <property type="protein sequence ID" value="ABX36763"/>
        <property type="gene ID" value="Daci_4132"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_4132"/>
    <dbReference type="eggNOG" id="COG1403">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_140063_1_0_4"/>
    <dbReference type="OMA" id="NMVPECH"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004519">
        <property type="term" value="F:endonuclease activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd00085">
        <property type="entry name" value="HNHc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003615">
        <property type="entry name" value="HNH_nuc"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0255">Endonuclease</keyword>
    <keyword evidence="1" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="1" id="KW-0540">Nuclease</keyword>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ABX36763.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="135" mass="15516" checksum="6B5F51BA568FBD86" modified="2008-01-15" version="1">MKLSKSQRAALREKFGGRCAYCGEELGERWHADHIEYVERELAFVPGKGIVTTGRMLRPERDTLENMNPACAPCNLDKHSLTLENWRALMQRSNEVLMRDVSTFRRAVRYGLVELKATPIIFYFETLAQGAHKES</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="42" xmlns="http://uniprot.org/uniprot">
    <accession>A9C2Y7</accession>
    <name>A9C2Y7_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Daci_4160</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="2" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX36791.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012205969.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_4160"/>
    <dbReference type="PRIDE" id="A9C2Y7"/>
    <dbReference type="EnsemblBacteria" id="ABX36791">
        <property type="protein sequence ID" value="ABX36791"/>
        <property type="gene ID" value="Daci_4160"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_4160"/>
    <dbReference type="eggNOG" id="ENOG502ZBYJ">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_157246_0_0_4"/>
    <dbReference type="OMA" id="SLCTIRC"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ABX36791.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="135" mass="15033" checksum="A027685A9538EB56" modified="2008-01-15" version="1">MGWYFSPQSRSELIAELIAPQETERASVKVIAHALRGNVLWSVVQVTAKAEGVHRDLAPGQSLCTIRCDLLERSGGQWGYKPLDESMHPYYYSCPLSYLNLAPEQSADWRAGVRAYHARRRTSKEATAPATALTV</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="60" xmlns="http://uniprot.org/uniprot">
    <accession>A9C347</accession>
    <name>A9C347_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Acyl-CoA reductase</fullName>
            <ecNumber evidence="1">1.2.1.50</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_4529</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>a long-chain fatty aldehyde + CoA + NADP(+) = a long-chain fatty acyl-CoA + H(+) + NADPH</text>
            <dbReference type="Rhea" id="RHEA:15437"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:17176"/>
            <dbReference type="ChEBI" id="CHEBI:57287"/>
            <dbReference type="ChEBI" id="CHEBI:57783"/>
            <dbReference type="ChEBI" id="CHEBI:58349"/>
            <dbReference type="ChEBI" id="CHEBI:83139"/>
            <dbReference type="EC" id="1.2.1.50"/>
        </reaction>
    </comment>
    <comment type="similarity">
        <text evidence="1">Belongs to the LuxC family.</text>
    </comment>
    <dbReference type="EC" id="1.2.1.50" evidence="1"/>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX37158.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012206328.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_4529"/>
    <dbReference type="PRIDE" id="A9C347"/>
    <dbReference type="EnsemblBacteria" id="ABX37158">
        <property type="protein sequence ID" value="ABX37158"/>
        <property type="gene ID" value="Daci_4529"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_4529"/>
    <dbReference type="eggNOG" id="COG1012">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_043373_0_0_4"/>
    <dbReference type="OMA" id="PEAGWHH"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003995">
        <property type="term" value="F:acyl-CoA dehydrogenase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0050062">
        <property type="term" value="F:long-chain-fatty-acyl-CoA reductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008218">
        <property type="term" value="P:bioluminescence"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd07080">
        <property type="entry name" value="ALDH_Acyl-CoA-Red_LuxC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016161">
        <property type="entry name" value="Ald_DH/histidinol_DH"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008670">
        <property type="entry name" value="CoA_reduct_LuxC"/>
    </dbReference>
    <dbReference type="Pfam" id="PF05893">
        <property type="entry name" value="LuxC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF009414">
        <property type="entry name" value="LuxC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53720">
        <property type="entry name" value="SSF53720"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="1" id="KW-0521">NADP</keyword>
    <keyword evidence="1" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="PIRNR" id="PIRNR009414"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX37158.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="498" mass="53691" checksum="B0C20A02BEB9FBAF" modified="2008-01-15" version="1">MNIERITAGYLPELPGLREDEVQWHVLPFERGGVRLEVSVPLLTGPQMHALAAHVRRAADRHLRAMPVAEIIDAIDRAIARLLDRSDPYRRQAEAWLPVVSGYDADMVRLGLTGFFKTFRAAQLRRFVAEDFANPAVLDGFQPAPKGGAVRAFGPDLLMHSWAGNVPALSLWSLVCGLLVKAPAIGKLASAEPLFAGWFARLLAEVHPPLADCLAVVWWSGAGGVDGADGADGVDGGGAAALHAEADTVLAYGGNQTLQALRQRLPVTTRFLPHGHKLGFGMVGAQALDTLKAPAVARLAAWDVMRYDQQGCYSPHVFYVERGAPVSARAFADYLAAELANLQRRFARRPLELEEGAAVARWQQSVEWSGDAQQLLGPVDAPWSVAYSDSLQPLAPTALYRTIAVVGVDRLDDAVPVVAEQREYLQTAGIAASPEQLYRLAGLLGAAGVTRISAIGSMSMPEAGWHHDGRFNLLDLVRMTEIEQSAEAAAQPFAPYAD</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-01-19" version="48" xmlns="http://uniprot.org/uniprot">
    <accession>A9C350</accession>
    <name>A9C350_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Transport protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ordered locus">Daci_4532</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="5" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX37161.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_4532"/>
    <dbReference type="EnsemblBacteria" id="ABX37161">
        <property type="protein sequence ID" value="ABX37161"/>
        <property type="gene ID" value="Daci_4532"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_4532"/>
    <dbReference type="eggNOG" id="COG2311">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_036065_2_0_4"/>
    <dbReference type="OMA" id="GIYFRFD"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007349">
        <property type="entry name" value="DUF418"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012429">
        <property type="entry name" value="HGSNAT_cat"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04235">
        <property type="entry name" value="DUF418"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07786">
        <property type="entry name" value="HGSNAT_cat"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="21"/>
            <end position="39"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="59"/>
            <end position="76"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="88"/>
            <end position="105"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="111"/>
            <end position="127"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="132"/>
            <end position="150"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="184"/>
            <end position="202"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="209"/>
            <end position="229"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="249"/>
            <end position="268"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="289"/>
            <end position="307"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="313"/>
            <end position="334"/>
        </location>
    </feature>
    <feature type="domain" description="HGSNAT_cat" evidence="3">
        <location>
            <begin position="15"/>
            <end position="204"/>
        </location>
    </feature>
    <feature type="domain" description="DUF418" evidence="2">
        <location>
            <begin position="206"/>
            <end position="352"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF04235"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF07786"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="ABX37161.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="354" mass="38089" checksum="AED025A5E82DD285" modified="2008-01-15" version="1">MGGRDMRHATGRGARLAGLDLARYLALAGMVFVNFKQAMHPALQEPGWLLSFFHFLEGKASATFVVLAGLGLVLATRSLEPATARLWTLRRALFLLVAGGMNLLIFPADIIHYYAVYFVLAIAWLQAGARALLAGMAAVAVLSAWALLQLDYSQGWDWASLSYQGLWEPAGFARNLLFNGFHPVLPWFAFFLCGMLLARLPLAEPRVQWGLVACGVAMVGLACAVSAIAAQSEWAAWLATGPMPPGPAYLLMGLGCASIAIGTCLRLADRWPAGPWRGLLPAGRMTLTLYLAHILIGMGLLEAMGALDGSRSLREVAVAAALYVIIASLAAWAWSKKVAQGPVEWVMRRLTALD</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="81" xmlns="http://uniprot.org/uniprot">
    <accession>A9C366</accession>
    <name>A9C366_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Transcriptional regulator, LysR family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Daci_4548</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="4" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the LysR transcriptional regulatory family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX37177.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012206347.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_4548"/>
    <dbReference type="PRIDE" id="A9C366"/>
    <dbReference type="EnsemblBacteria" id="ABX37177">
        <property type="protein sequence ID" value="ABX37177"/>
        <property type="gene ID" value="Daci_4548"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_4548"/>
    <dbReference type="eggNOG" id="COG0583">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_039613_16_2_4"/>
    <dbReference type="OMA" id="IVPDWHF"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003700">
        <property type="term" value="F:DNA-binding transcription factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005119">
        <property type="entry name" value="LysR_subst-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000847">
        <property type="entry name" value="Tscrpt_reg_HTH_LysR"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036390">
        <property type="entry name" value="WH_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00126">
        <property type="entry name" value="HTH_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03466">
        <property type="entry name" value="LysR_substrate"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46785">
        <property type="entry name" value="SSF46785"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50931">
        <property type="entry name" value="HTH_LYSR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HTH lysR-type" evidence="2">
        <location>
            <begin position="1"/>
            <end position="59"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00009437"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS50931"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ABX37177.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="300" mass="32975" checksum="43C378FA0C25D373" modified="2008-01-15" version="1">MDRWQAMRVFCGVVDAQGFTAAQDRLGMTHSTASRHVKWLESELGTQLLQRNSRGLSLTDAGRSYYLSCVQLLEQLDAAEAALAQRRARVAGVLRITLPLAVGAIELGDWLPEFEQQFPELELQLLCTDRLVDLVAEGVDAAVRISRQLPDSGLQARLLTHSPLVLVASPAYLMRQGVVQVPGQLAEHRALAFAAGPAPLRWSVVSGQGAVTEVQPHTALRTDSVATIFEAARAGRGIAALTWHTVRSAVERGQLVRVLPCFHLGQYSYHALYPRTRHLRPAVRAFVDFMARRYRQGPGG</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="78" xmlns="http://uniprot.org/uniprot">
    <accession>A9C3D8</accession>
    <name>A9C3D8_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="8">FMN-dependent alpha-hydroxy acid dehydrogenase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="8" type="ordered locus">Daci_4620</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="9" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>FMN</name>
            <dbReference type="ChEBI" id="CHEBI:58210"/>
        </cofactor>
    </comment>
    <comment type="similarity">
        <text evidence="3">Belongs to the FMN-dependent alpha-hydroxy acid dehydrogenase family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX37249.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_4620"/>
    <dbReference type="PRIDE" id="A9C3D8"/>
    <dbReference type="EnsemblBacteria" id="ABX37249">
        <property type="protein sequence ID" value="ABX37249"/>
        <property type="gene ID" value="Daci_4620"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_4620"/>
    <dbReference type="eggNOG" id="COG1304">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_020639_0_0_4"/>
    <dbReference type="OMA" id="AWSWEKI"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0010181">
        <property type="term" value="F:FMN binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016491">
        <property type="term" value="F:oxidoreductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd02809">
        <property type="entry name" value="alpha_hydroxyacid_oxid_FMN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.20.20.70">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013785">
        <property type="entry name" value="Aldolase_TIM"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012133">
        <property type="entry name" value="Alpha-hydoxy_acid_DH_FMN"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000262">
        <property type="entry name" value="FMN-dep_DH"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037396">
        <property type="entry name" value="FMN_HAD"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01070">
        <property type="entry name" value="FMN_dh"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF000138">
        <property type="entry name" value="Al-hdrx_acd_dh"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51349">
        <property type="entry name" value="FMN_HYDROXY_ACID_DH_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-0285">Flavoprotein</keyword>
    <keyword evidence="5" id="KW-0288">FMN</keyword>
    <keyword evidence="2" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="FMN hydroxy acid dehydrogenase" evidence="7">
        <location>
            <begin position="27"/>
            <end position="393"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="6">
        <location>
            <begin position="1"/>
            <end position="20"/>
        </location>
    </feature>
    <feature type="active site" description="Proton acceptor" evidence="4">
        <location>
            <position position="287"/>
        </location>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <position position="53"/>
        </location>
        <ligand>
            <name>glyoxylate</name>
            <dbReference type="ChEBI" id="CHEBI:36655"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <begin position="106"/>
            <end position="108"/>
        </location>
        <ligand>
            <name>FMN</name>
            <dbReference type="ChEBI" id="CHEBI:58210"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <position position="135"/>
        </location>
        <ligand>
            <name>FMN</name>
            <dbReference type="ChEBI" id="CHEBI:58210"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <position position="161"/>
        </location>
        <ligand>
            <name>FMN</name>
            <dbReference type="ChEBI" id="CHEBI:58210"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <position position="163"/>
        </location>
        <ligand>
            <name>glyoxylate</name>
            <dbReference type="ChEBI" id="CHEBI:36655"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <position position="189"/>
        </location>
        <ligand>
            <name>FMN</name>
            <dbReference type="ChEBI" id="CHEBI:58210"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <position position="198"/>
        </location>
        <ligand>
            <name>glyoxylate</name>
            <dbReference type="ChEBI" id="CHEBI:36655"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <position position="263"/>
        </location>
        <ligand>
            <name>FMN</name>
            <dbReference type="ChEBI" id="CHEBI:58210"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <position position="285"/>
        </location>
        <ligand>
            <name>FMN</name>
            <dbReference type="ChEBI" id="CHEBI:58210"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <position position="287"/>
        </location>
        <ligand>
            <name>glyoxylate</name>
            <dbReference type="ChEBI" id="CHEBI:36655"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <position position="290"/>
        </location>
        <ligand>
            <name>glyoxylate</name>
            <dbReference type="ChEBI" id="CHEBI:36655"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <begin position="321"/>
            <end position="325"/>
        </location>
        <ligand>
            <name>FMN</name>
            <dbReference type="ChEBI" id="CHEBI:58210"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <begin position="344"/>
            <end position="345"/>
        </location>
        <ligand>
            <name>FMN</name>
            <dbReference type="ChEBI" id="CHEBI:58210"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001917"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023002"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00024042"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="PIRSR" id="PIRSR000138-1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="PIRSR" id="PIRSR000138-2"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="PROSITE" id="PS51349"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="ABX37249.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="393" mass="41428" checksum="C9AA433F87E027A2" modified="2008-01-15" version="1">MPPPLLAEDAAHRQHSNAMSQVPALQAVPDGIINLADHEAHARQRMDDNAWAYFSGGAADERSLAANRSAWDALPLWPRVLRPLAGGHTRLQLLGRELACPLLVAPMAFQRMAHEDAELATAYAAAALGAGMVLSTQASLPLETVAQAARLTPGHGPLWFQLYLQHDRGFTTQLIKRAEAAGYEALVLTVDAPTSGVRDRERRARFCLPPGVSAVNLQGMAPLAAMQLAPGQSALFDGLLHHAPTWDDVAWLQQQTRLPLLLKGVLHSADALQAARLGVAGIIVSNHGGRTLDTAPATATALARVARAVRGAGHELPLLADGGIRRGTDVLKAIALGATAVLIGRPVLWGLANAGAAGVAHVLRLLRDELEIAMALTGCATLAQATVELLDTE</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="40" xmlns="http://uniprot.org/uniprot">
    <accession>A9C3K3</accession>
    <name>A9C3K3_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Daci_4685</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="2" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX37314.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012206484.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_4685"/>
    <dbReference type="PRIDE" id="A9C3K3"/>
    <dbReference type="EnsemblBacteria" id="ABX37314">
        <property type="protein sequence ID" value="ABX37314"/>
        <property type="gene ID" value="Daci_4685"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_4685"/>
    <dbReference type="HOGENOM" id="CLU_2648513_0_0_4"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ABX37314.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="76" mass="8408" checksum="624786F9D27886BA" modified="2008-01-15" version="1">MSTLQDLQMRLARLNAAIHSGERTITTEDGASVTYRSLDEMMGARRDLHTQISAVAGTGQSRALVARFRFAGLRDR</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="47" xmlns="http://uniprot.org/uniprot">
    <accession>A9C3K6</accession>
    <name>A9C3K6_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Daci_4688</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="2" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX37317.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_4688"/>
    <dbReference type="PRIDE" id="A9C3K6"/>
    <dbReference type="EnsemblBacteria" id="ABX37317">
        <property type="protein sequence ID" value="ABX37317"/>
        <property type="gene ID" value="Daci_4688"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_4688"/>
    <dbReference type="eggNOG" id="COG4220">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_1427445_0_0_4"/>
    <dbReference type="OMA" id="ARNEWIR"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ABX37317.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="180" mass="19356" checksum="F9219D597452DC9F" modified="2008-01-15" version="1">MKVLPYFDAPISQAEFAALIGVSEARVSQLVSEGVIVRGDTGHEWLLGYCERLRDQAAGRASAGLGGLDLVQERAALARSQREAQDLKNAVARGEFAPIGALADVLGLASSAVVDRMDQIEGQLRKACPDLPEDARVTVLRVLADARNEWIRVTSKLIGERVAAMAEAPDEDELDEEAAF</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="31" xmlns="http://uniprot.org/uniprot">
    <accession>A9C3L4</accession>
    <name>A9C3L4_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Daci_4696</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="2" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
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            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
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        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
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            <strain evidence="2">DSM 14801 / SPH-1</strain>
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</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="37" xmlns="http://uniprot.org/uniprot">
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                <person name="Fischer K."/>
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            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
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                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
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        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
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            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
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        <source>
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        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="354" mass="40909" checksum="F1466BF37312A703" modified="2008-01-15" version="1">MDGKILVSFIGKSPNDPSFDAWLQEHRIFERPHLAEQDEEYEEDTEAAAINARNSEIEENEKHSIALIYENQDNYNRIFKDNSIHMDGDFILKQVAFYAQGVSSYRGFQGTLPFGLVFSDTQTLVHQKLGQPIASRFIHNLSADLWVTPDWHINISYVHLSGTIAIIHIRRPNIYDLRMIGNHSPDISSAIRDRMPSPHNLSQALGFSIDDFRLADAFKPIIWDQDSLNEANHTEEVFRYIKNYGLTLYFREGKDFRRESNPLPKYGTFFAGYRLNRAGDMESDGFQGQLPFGLSFHDSPLEILKHMGQPPDKKGTSSDTGYFIWDLPSYRVHIVYSLIDWQLYRITFFAPFAR</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="68" xmlns="http://uniprot.org/uniprot">
    <accession>A9BM13</accession>
    <name>A9BM13_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="13">NADH dehydrogenase (Quinone)</fullName>
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        </submittedName>
    </protein>
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        <name evidence="13" type="ordered locus">Daci_4729</name>
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    <organism evidence="13 14">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
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            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
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            <taxon>Comamonadaceae</taxon>
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    <reference evidence="13 14" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
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                <person name="Fischer K."/>
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            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="14">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="14" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="14">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="2">Cell membrane</location>
            <topology evidence="2">Multi-pass membrane protein</topology>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="1 7">Membrane</location>
            <topology evidence="1 7">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <dbReference type="EC" id="1.6.99.5" evidence="13"/>
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        <property type="protein sequence ID" value="ABX37358.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
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        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_4729"/>
    <dbReference type="PRIDE" id="A9BM13"/>
    <dbReference type="EnsemblBacteria" id="ABX37358">
        <property type="protein sequence ID" value="ABX37358"/>
        <property type="gene ID" value="Daci_4729"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_4729"/>
    <dbReference type="eggNOG" id="COG1009">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="eggNOG" id="COG2111">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_007100_2_0_4"/>
    <dbReference type="OMA" id="AFILQYM"/>
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        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016491">
        <property type="term" value="F:oxidoreductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025383">
        <property type="entry name" value="MbhD-like_TM"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007182">
        <property type="entry name" value="MnhB"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001750">
        <property type="entry name" value="ND/Mrp_mem"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001516">
        <property type="entry name" value="Proton_antipo_N"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13244">
        <property type="entry name" value="DUF4040"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04039">
        <property type="entry name" value="MnhB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00361">
        <property type="entry name" value="Proton_antipo_M"/>
        <property type="match status" value="1"/>
    </dbReference>
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        <property type="entry name" value="Proton_antipo_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="6 8" id="KW-0472">Membrane</keyword>
    <keyword evidence="13" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="14" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4 7 8" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="5 8" id="KW-1133">Transmembrane helix</keyword>
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            <end position="96"/>
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    </feature>
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    <feature type="transmembrane region" description="Helical" evidence="8">
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    </evidence>
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        <source>
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        <source>
            <dbReference type="RuleBase" id="RU000320"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="SAM" id="Phobius"/>
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    </evidence>
    <evidence type="ECO:0000259" key="9">
        <source>
            <dbReference type="Pfam" id="PF00361"/>
        </source>
    </evidence>
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        <source>
            <dbReference type="Pfam" id="PF00662"/>
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    </evidence>
    <evidence type="ECO:0000259" key="11">
        <source>
            <dbReference type="Pfam" id="PF04039"/>
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    </evidence>
    <evidence type="ECO:0000259" key="12">
        <source>
            <dbReference type="Pfam" id="PF13244"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="13">
        <source>
            <dbReference type="EMBL" id="ABX37358.1"/>
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    </evidence>
    <evidence type="ECO:0000313" key="14">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
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    </evidence>
    <sequence length="992" mass="107961" checksum="6106D1E16ADA3671" modified="2008-01-15" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="56" xmlns="http://uniprot.org/uniprot">
    <accession>A9BM17</accession>
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                <person name="Fischer K."/>
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        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="11">DSM 14801 / SPH-1</strain>
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    </reference>
    <reference evidence="11" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="11">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="2 8">Cell membrane</location>
            <topology evidence="2 8">Multi-pass membrane protein</topology>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="3 8">Belongs to the CPA3 antiporters (TC 2.A.63) subunit F family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX37362.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012206532.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_4733"/>
    <dbReference type="EnsemblBacteria" id="ABX37362">
        <property type="protein sequence ID" value="ABX37362"/>
        <property type="gene ID" value="Daci_4733"/>
    </dbReference>
    <dbReference type="GeneID" id="60688677"/>
    <dbReference type="KEGG" id="dac:Daci_4733"/>
    <dbReference type="eggNOG" id="COG2212">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_125825_1_3_4"/>
    <dbReference type="OMA" id="VIAFARY"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015297">
        <property type="term" value="F:antiporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015075">
        <property type="term" value="F:ion transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007208">
        <property type="entry name" value="MrpF/PhaF-like"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR34702">
        <property type="entry name" value="PTHR34702"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04066">
        <property type="entry name" value="MrpF_PhaF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF028784">
        <property type="entry name" value="MrpF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="8" id="KW-0050">Antiport</keyword>
    <keyword evidence="4 8" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="8" id="KW-0406">Ion transport</keyword>
    <keyword evidence="7 8 9" id="KW-0472">Membrane</keyword>
    <keyword evidence="11" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="5 9" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="6 9" id="KW-1133">Transmembrane helix</keyword>
    <keyword evidence="8" id="KW-0813">Transport</keyword>
    <feature type="transmembrane region" description="Helical" evidence="9">
        <location>
            <begin position="6"/>
            <end position="25"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="9">
        <location>
            <begin position="37"/>
            <end position="58"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="9">
        <location>
            <begin position="64"/>
            <end position="86"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00004651"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00009212"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="PIRNR" id="PIRNR028784"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="EMBL" id="ABX37362.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="92" mass="10119" checksum="96DA65B0C5F951B5" modified="2008-01-15" version="1">MMPWFHWTLMFALGLLVAAMGCAVLRLLKGPHAQDRVLALDCMYLNGMLAMLLMGIIYDSTSYFEAALLVALFGCVGSTAMAKFLLRGEVIE</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="73" xmlns="http://uniprot.org/uniprot">
    <accession>A9BM93</accession>
    <name>A9BM93_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">tRNA-specific adenosine deaminase</fullName>
            <ecNumber evidence="3">3.5.4.33</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="primary">tadA</name>
        <name evidence="6" type="ordered locus">Daci_4809</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="7" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="3">Catalyzes the deamination of adenosine to inosine at the wobble position 34 of tRNA(Arg2).</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="3">
            <text>adenosine(34) in tRNA + H(+) + H2O = inosine(34) in tRNA + NH4(+)</text>
            <dbReference type="Rhea" id="RHEA:43168"/>
            <dbReference type="Rhea" id="RHEA-COMP:10373"/>
            <dbReference type="Rhea" id="RHEA-COMP:10374"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:28938"/>
            <dbReference type="ChEBI" id="CHEBI:74411"/>
            <dbReference type="ChEBI" id="CHEBI:82852"/>
            <dbReference type="EC" id="3.5.4.33"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="3">
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </cofactor>
        <text evidence="3">Binds 1 zinc ion per subunit.</text>
    </comment>
    <comment type="subunit">
        <text evidence="3">Homodimer.</text>
    </comment>
    <comment type="similarity">
        <text evidence="3">Belongs to the cytidine and deoxycytidylate deaminase family.</text>
    </comment>
    <dbReference type="EC" id="3.5.4.33" evidence="3"/>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX37438.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_4809"/>
    <dbReference type="PRIDE" id="A9BM93"/>
    <dbReference type="EnsemblBacteria" id="ABX37438">
        <property type="protein sequence ID" value="ABX37438"/>
        <property type="gene ID" value="Daci_4809"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_4809"/>
    <dbReference type="eggNOG" id="COG0590">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="eggNOG" id="COG0596">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_044304_2_1_4"/>
    <dbReference type="OMA" id="DGCELFV"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0052717">
        <property type="term" value="F:tRNA-specific adenosine-34 deaminase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008270">
        <property type="term" value="F:zinc ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0002100">
        <property type="term" value="P:tRNA wobble adenosine to inosine editing"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.1820">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00972">
        <property type="entry name" value="tRNA_aden_deaminase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029058">
        <property type="entry name" value="AB_hydrolase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000073">
        <property type="entry name" value="AB_hydrolase_1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016192">
        <property type="entry name" value="APOBEC/CMP_deaminase_Zn-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002125">
        <property type="entry name" value="CMP_dCMP_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016193">
        <property type="entry name" value="Cytidine_deaminase-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000639">
        <property type="entry name" value="Epox_hydrolase-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR028883">
        <property type="entry name" value="tRNA_aden_deaminase"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00561">
        <property type="entry name" value="Abhydrolase_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF14437">
        <property type="entry name" value="MafB19-deam"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00111">
        <property type="entry name" value="ABHYDROLASE"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00412">
        <property type="entry name" value="EPOXHYDRLASE"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53474">
        <property type="entry name" value="SSF53474"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53927">
        <property type="entry name" value="SSF53927"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00903">
        <property type="entry name" value="CYT_DCMP_DEAMINASES_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51747">
        <property type="entry name" value="CYT_DCMP_DEAMINASES_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="1 3" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0819">tRNA processing</keyword>
    <keyword evidence="2 3" id="KW-0862">Zinc</keyword>
    <feature type="domain" description="CMP/dCMP-type deaminase" evidence="5">
        <location>
            <begin position="31"/>
            <end position="143"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="4">
        <location>
            <begin position="1"/>
            <end position="23"/>
        </location>
    </feature>
    <feature type="active site" description="Proton donor" evidence="3">
        <location>
            <position position="84"/>
        </location>
    </feature>
    <feature type="binding site" evidence="3">
        <location>
            <position position="82"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
            <note>catalytic</note>
        </ligand>
    </feature>
    <feature type="binding site" evidence="3">
        <location>
            <position position="112"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
            <note>catalytic</note>
        </ligand>
    </feature>
    <feature type="binding site" evidence="3">
        <location>
            <position position="115"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
            <note>catalytic</note>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022833"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00972"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="PROSITE" id="PS51747"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="ABX37438.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="475" mass="51440" checksum="F262C211B5273155" modified="2008-01-15" version="1">MRRACASRFPDPQSPGHRDTLTAEHRPLPQADDEAWMRAALELARAAAQAGEVPVGAVIVKDGAIVGQGRNAPVAQGDPTAHAEVLALRDAAARLGNYRLDDCTLYVTLEPCTMCSGAMLHARLGRVVYGAAEPRTGAAGSVLDVFALPQINHHTQVTRGVLAGECAALMSDFFRTRRAEQRAAQPHPLKDTALRHADSTFGGFAQPQWRSDLPALAGLRLAVVDEGPHDAPLTWLCLHGSPSWGQLFQPMLPGWLQAGHRVVVPDLPGFGRSDQPKKEKAHSAAWHVQVLRELVLALDLRSVVLVGHDDGARLGLAVAQAEPARFCGAWLMNAWPAGPAPDACVQWFAQAARKPSWPVGRAMHEAGEEAGAQPQAWNLPFSQPGHRAALQAWPRVQAEMPALPMELLVQWSQQQRLWVQGGEHDALMPAPAWRHAWLQALPQLPPAQLRLSPCGHWVPLCAAGMVADAVEYFRP</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="68" xmlns="http://uniprot.org/uniprot">
    <accession>A9BM97</accession>
    <name>A9BM97_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="7">Oxidoreductase alpha (Molybdopterin) subunit</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ordered locus">Daci_4813</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="8" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>Mo-bis(molybdopterin guanine dinucleotide)</name>
            <dbReference type="ChEBI" id="CHEBI:60539"/>
        </cofactor>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="2">
            <name>[4Fe-4S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:49883"/>
        </cofactor>
    </comment>
    <comment type="similarity">
        <text evidence="3">Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX37442.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012206612.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_4813"/>
    <dbReference type="PRIDE" id="A9BM97"/>
    <dbReference type="EnsemblBacteria" id="ABX37442">
        <property type="protein sequence ID" value="ABX37442"/>
        <property type="gene ID" value="Daci_4813"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_4813"/>
    <dbReference type="eggNOG" id="COG0243">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_000422_16_1_4"/>
    <dbReference type="OMA" id="DCSDLCH"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051539">
        <property type="term" value="F:4 iron, 4 sulfur cluster binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008863">
        <property type="term" value="F:formate dehydrogenase (NAD+) activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030151">
        <property type="term" value="F:molybdenum ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043546">
        <property type="term" value="F:molybdopterin cofactor binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd02787">
        <property type="entry name" value="MopB_CT_ydeP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="CDD" id="cd02767">
        <property type="entry name" value="MopB_ydeP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009010">
        <property type="entry name" value="Asp_de-COase-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037951">
        <property type="entry name" value="MopB_CT_YdeP"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006657">
        <property type="entry name" value="MoPterin_dinucl-bd_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006656">
        <property type="entry name" value="Mopterin_OxRdtase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010046">
        <property type="entry name" value="Mopterin_OxRdtse_a_bac"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041953">
        <property type="entry name" value="YdeP_MopB"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43105:SF4">
        <property type="entry name" value="PTHR43105:SF4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00384">
        <property type="entry name" value="Molybdopterin"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01568">
        <property type="entry name" value="Molydop_binding"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50692">
        <property type="entry name" value="SSF50692"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01701">
        <property type="entry name" value="Fdhalpha-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Molybdopterin" evidence="5">
        <location>
            <begin position="109"/>
            <end position="490"/>
        </location>
    </feature>
    <feature type="domain" description="Molydop_binding" evidence="6">
        <location>
            <begin position="651"/>
            <end position="758"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001942"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00001966"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00010312"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="Pfam" id="PF00384"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="Pfam" id="PF01568"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="ABX37442.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="780" mass="85234" checksum="FF603EDDBB994382" modified="2008-01-15" version="1"> </sequence>
</entry>
<entry dataset="Swiss-Prot" created="2009-04-14" modified="2022-08-03" version="78" xmlns="http://uniprot.org/uniprot">
    <accession>A9BME3</accession>
    <name>BPT_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Aspartate/glutamate leucyltransferase</fullName>
            <ecNumber evidence="1">2.3.2.29</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="1" type="primary">bpt</name>
        <name type="ordered locus">Daci_4859</name>
    </gene>
    <organism>
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference key="1">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain>DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="1">Functions in the N-end rule pathway of protein degradation where it conjugates Leu from its aminoacyl-tRNA to the N-termini of proteins containing an N-terminal aspartate or glutamate.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>L-leucyl-tRNA(Leu) + N-terminal L-glutamyl-[protein] = H(+) + N-terminal L-leucyl-L-glutamyl-[protein] + tRNA(Leu)</text>
            <dbReference type="Rhea" id="RHEA:50412"/>
            <dbReference type="Rhea" id="RHEA-COMP:9613"/>
            <dbReference type="Rhea" id="RHEA-COMP:9622"/>
            <dbReference type="Rhea" id="RHEA-COMP:12664"/>
            <dbReference type="Rhea" id="RHEA-COMP:12668"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:64721"/>
            <dbReference type="ChEBI" id="CHEBI:78442"/>
            <dbReference type="ChEBI" id="CHEBI:78494"/>
            <dbReference type="ChEBI" id="CHEBI:133041"/>
            <dbReference type="EC" id="2.3.2.29"/>
        </reaction>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>L-leucyl-tRNA(Leu) + N-terminal L-aspartyl-[protein] = H(+) + N-terminal L-leucyl-L-aspartyl-[protein] + tRNA(Leu)</text>
            <dbReference type="Rhea" id="RHEA:50420"/>
            <dbReference type="Rhea" id="RHEA-COMP:9613"/>
            <dbReference type="Rhea" id="RHEA-COMP:9622"/>
            <dbReference type="Rhea" id="RHEA-COMP:12669"/>
            <dbReference type="Rhea" id="RHEA-COMP:12674"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:64720"/>
            <dbReference type="ChEBI" id="CHEBI:78442"/>
            <dbReference type="ChEBI" id="CHEBI:78494"/>
            <dbReference type="ChEBI" id="CHEBI:133042"/>
            <dbReference type="EC" id="2.3.2.29"/>
        </reaction>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="1">Belongs to the R-transferase family. Bpt subfamily.</text>
    </comment>
    <dbReference type="EC" id="2.3.2.29" evidence="1"/>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX37488.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012206658.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A9BME3"/>
    <dbReference type="SMR" id="A9BME3"/>
    <dbReference type="STRING" id="398578.Daci_4859"/>
    <dbReference type="PRIDE" id="A9BME3"/>
    <dbReference type="EnsemblBacteria" id="ABX37488">
        <property type="protein sequence ID" value="ABX37488"/>
        <property type="gene ID" value="Daci_4859"/>
    </dbReference>
    <dbReference type="GeneID" id="60689203"/>
    <dbReference type="KEGG" id="dac:Daci_4859"/>
    <dbReference type="eggNOG" id="COG2935">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_077607_0_0_4"/>
    <dbReference type="OMA" id="MVEDSHV"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004057">
        <property type="term" value="F:arginyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008914">
        <property type="term" value="F:leucyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0071596">
        <property type="term" value="P:ubiquitin-dependent protein catabolic process via the N-end rule pathway"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00689">
        <property type="entry name" value="Bpt"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016181">
        <property type="entry name" value="Acyl_CoA_acyltransferase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017138">
        <property type="entry name" value="Asp_Glu_LeuTrfase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR030700">
        <property type="entry name" value="N-end_Aminoacyl_Trfase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007472">
        <property type="entry name" value="N-end_Aminoacyl_Trfase_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007471">
        <property type="entry name" value="N-end_Aminoacyl_Trfase_N"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR21367">
        <property type="entry name" value="PTHR21367"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04377">
        <property type="entry name" value="ATE_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04376">
        <property type="entry name" value="ATE_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF037208">
        <property type="entry name" value="ATE_pro_prd"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55729">
        <property type="entry name" value="SSF55729"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword id="KW-0012">Acyltransferase</keyword>
    <keyword id="KW-0963">Cytoplasm</keyword>
    <keyword id="KW-1185">Reference proteome</keyword>
    <keyword id="KW-0808">Transferase</keyword>
    <feature type="chain" id="PRO_1000131980" description="Aspartate/glutamate leucyltransferase">
        <location>
            <begin position="1"/>
            <end position="249"/>
        </location>
    </feature>
    <evidence type="ECO:0000255" key="1">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00689"/>
        </source>
    </evidence>
    <sequence length="249" mass="28747" checksum="407B63167A256A29" modified="2008-01-15" version="1">MTHPNDLPLQALQFYATAAYPCSYLDGRLARSQVATPSHLIQNSAYSELVSLGFRRSGMFTYRPYCDGCRACVPMRILVHDFRPDRSQRRAAARHADLTASIQRLHYSNEHYQLYLRYQQSRHSGGGMDHDSVDQYTQFLLQSRVNSRLVEFRTPAADGGIGTLKMVSILDVLEDGLSAVYTFYEPNDPASYGTFNVLWQIDQARSMSLPYVYLGYWIADSQKMNYKARFLPHEVRVDERWQRVDQLPR</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="78" xmlns="http://uniprot.org/uniprot">
    <accession>A9BMH3</accession>
    <name>A9BMH3_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Transcriptional regulator, TetR family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ordered locus">Daci_4889</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="5" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX37518.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012206688.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_4889"/>
    <dbReference type="PRIDE" id="A9BMH3"/>
    <dbReference type="EnsemblBacteria" id="ABX37518">
        <property type="protein sequence ID" value="ABX37518"/>
        <property type="gene ID" value="Daci_4889"/>
    </dbReference>
    <dbReference type="GeneID" id="60689233"/>
    <dbReference type="KEGG" id="dac:Daci_4889"/>
    <dbReference type="eggNOG" id="COG1309">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_096352_1_0_4"/>
    <dbReference type="OMA" id="LVRPYHD"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009057">
        <property type="entry name" value="Homeobox-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001647">
        <property type="entry name" value="HTH_TetR"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041474">
        <property type="entry name" value="NicS_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036271">
        <property type="entry name" value="Tet_transcr_reg_TetR-rel_C_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF17938">
        <property type="entry name" value="TetR_C_29"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00440">
        <property type="entry name" value="TetR_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46689">
        <property type="entry name" value="SSF46689"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48498">
        <property type="entry name" value="SSF48498"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50977">
        <property type="entry name" value="HTH_TETR_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HTH tetR-type" evidence="3">
        <location>
            <begin position="30"/>
            <end position="90"/>
        </location>
    </feature>
    <feature type="DNA-binding region" description="H-T-H motif" evidence="1">
        <location>
            <begin position="53"/>
            <end position="72"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="1"/>
            <end position="28"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="2">
        <location>
            <begin position="10"/>
            <end position="27"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00335"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="PROSITE" id="PS50977"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="ABX37518.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="246" mass="27853" checksum="397C3A0E89AA5F53" modified="2008-01-15" version="1">MARMPPQKKPTESAPKKPRRNSGRPLADDAVGRDIILQTTVNLLKTRTPEQLSILEIAAAAGVTRALVRYYFSSLKGLLQEVTESLMRELQNRMEVALRTQGTVEERVYQRLLLRLDFMREHPQFERLALSEIYHYESEEEPPPSGTPLQRITRRGLELTSTMLMDGAQASHPAQVDPRFIHLAILSISAFLPTARPLLAELFGEGPEADQQIERYLRFMSHLLAERIRQDAPAQDHPPSPGHHPG</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="71" xmlns="http://uniprot.org/uniprot">
    <accession>A9BMJ5</accession>
    <name>A9BMJ5_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">MATE efflux family protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_4911</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX37540.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012206710.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_4911"/>
    <dbReference type="PRIDE" id="A9BMJ5"/>
    <dbReference type="EnsemblBacteria" id="ABX37540">
        <property type="protein sequence ID" value="ABX37540"/>
        <property type="gene ID" value="Daci_4911"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_4911"/>
    <dbReference type="eggNOG" id="COG0534">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_012893_6_0_4"/>
    <dbReference type="OMA" id="EFWILLK"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015297">
        <property type="term" value="F:antiporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0042910">
        <property type="term" value="F:xenobiotic transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002528">
        <property type="entry name" value="MATE_fam"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01554">
        <property type="entry name" value="MatE"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00797">
        <property type="entry name" value="matE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="21"/>
            <end position="42"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="48"/>
            <end position="74"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="95"/>
            <end position="113"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="133"/>
            <end position="151"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="163"/>
            <end position="184"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="196"/>
            <end position="216"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="245"/>
            <end position="268"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="280"/>
            <end position="301"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="322"/>
            <end position="341"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="361"/>
            <end position="382"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="389"/>
            <end position="410"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="430"/>
            <end position="449"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX37540.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="455" mass="48638" checksum="A96E55298C6298F1" modified="2008-01-15" version="1">MSQPARAPLGTERRTIAQHALTVLAGQLAVMAFGVTDTIVAGRYAEEALAALSVGSAIFVSVYVSLMGIFQALLPLWAEHRGAGQPEAIGRTLRQAMYMLLAACALGMGVLLFPDALLRWADVPPPLQVEVRAYLSVLAWSLPAALLFRIYSTLNQALGHPLLVTWLQLLSLLLKIPLSIWLAFGGAGLPALGAEGCAWATLVVNYAMVALAFVLMRSQRLYAPLALWQRMEPPDWPQLAQFARLGVPAGLAILVEVTSFTLMALFVARQGTLSSASHQIAANLAALCYMVPLSLAIATSARISYWRGAGDEAMARRLVTMGWRLAATGGLVLASALFLSREGLASIYSSNPEVVSTTASLLAWVAAYHVADAVQTFCLFVLRCYRITVAPLVIYCLLLWGGGLAGGYWLAYGTDSALPAWLHHGTPAPFWASSACALLVTALVFSAIVRKATSR</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="73" xmlns="http://uniprot.org/uniprot">
    <accession>A9BMK0</accession>
    <name>A9BMK0_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="3 7">Phosphate transport system permease protein PstA</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="9" type="ordered locus">Daci_4916</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="9 10" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="10" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="7">Cell inner membrane</location>
            <topology evidence="7">Multi-pass membrane protein</topology>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2 7">Belongs to the binding-protein-dependent transport system permease family. CysTW subfamily.</text>
    </comment>
    <comment type="caution">
        <text evidence="7">Lacks conserved residue(s) required for the propagation of feature annotation.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX37545.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_4916"/>
    <dbReference type="PRIDE" id="A9BMK0"/>
    <dbReference type="EnsemblBacteria" id="ABX37545">
        <property type="protein sequence ID" value="ABX37545"/>
        <property type="gene ID" value="Daci_4916"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_4916"/>
    <dbReference type="eggNOG" id="COG0581">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_033621_2_0_4"/>
    <dbReference type="OMA" id="GIARWKA"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005887">
        <property type="term" value="C:integral component of plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005315">
        <property type="term" value="F:inorganic phosphate transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0035435">
        <property type="term" value="P:phosphate ion transmembrane transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd06261">
        <property type="entry name" value="TM_PBP2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.3720.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000515">
        <property type="entry name" value="MetI-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035906">
        <property type="entry name" value="MetI-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005672">
        <property type="entry name" value="Phosphate_PstA"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00528">
        <property type="entry name" value="BPD_transp_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF161098">
        <property type="entry name" value="SSF161098"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00974">
        <property type="entry name" value="3a0107s02c"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50928">
        <property type="entry name" value="ABC_TM1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="7" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="6 7" id="KW-0472">Membrane</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4 7" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="5 7" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="31"/>
            <end position="49"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="83"/>
            <end position="108"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="128"/>
            <end position="145"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="152"/>
            <end position="170"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="268"/>
            <end position="290"/>
        </location>
    </feature>
    <feature type="domain" description="ABC transmembrane type-1" evidence="8">
        <location>
            <begin position="84"/>
            <end position="287"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00007069"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00016864"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="RuleBase" id="RU363043"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="PROSITE" id="PS50928"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="ABX37545.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="294" mass="31742" checksum="3807B79F93BB8A48" modified="2008-01-15" version="1">MSSTSTKMINAAELTRVRQAKYAKRKRVNQVALTLSLAAMAFGVFWLVWILWETITLGIGGLSLALFSEMTPPPNEAGGIANAIFGSLIMVALATFVGTPIGVMAGVYLAEYDARGWLANTTRFVNDILLSAPSIVIGLFVYTVVVARFKSFSGYAGVVALALIVIPVVIRTTENMLVLVPASLREAAYALGTPKWKVIIMVTLRAARAGVITGVLLAVARIAGETAPLLFTALNNQFWNADLSKPMASLPVTIFKFAMSPYENWQQLAWAGVFLITVAVLGLNILARFLTRQK</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="95" xmlns="http://uniprot.org/uniprot">
    <accession>A9BMM0</accession>
    <name>A9BMM0_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="6">Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase</fullName>
            <shortName evidence="6">UDP-N-acetylglucosamine acyltransferase</shortName>
            <ecNumber evidence="6">2.3.1.129</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="6" type="primary">lpxA</name>
        <name evidence="8" type="ordered locus">Daci_4936</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="9" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="6">Involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="6">
            <text>a (3R)-hydroxyacyl-[ACP] + UDP-N-acetyl-alpha-D-glucosamine = a UDP-3-O-[(3R)-3-hydroxyacyl]-N-acetyl-alpha-D-glucosamine + holo-[ACP]</text>
            <dbReference type="Rhea" id="RHEA:67812"/>
            <dbReference type="Rhea" id="RHEA-COMP:9685"/>
            <dbReference type="Rhea" id="RHEA-COMP:9945"/>
            <dbReference type="ChEBI" id="CHEBI:57705"/>
            <dbReference type="ChEBI" id="CHEBI:64479"/>
            <dbReference type="ChEBI" id="CHEBI:78827"/>
            <dbReference type="ChEBI" id="CHEBI:173225"/>
            <dbReference type="EC" id="2.3.1.129"/>
        </reaction>
    </comment>
    <comment type="pathway">
        <text evidence="6">Glycolipid biosynthesis; lipid IV(A) biosynthesis; lipid IV(A) from (3R)-3-hydroxytetradecanoyl-[acyl-carrier-protein] and UDP-N-acetyl-alpha-D-glucosamine: step 1/6.</text>
    </comment>
    <comment type="subunit">
        <text evidence="6">Homotrimer.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="6">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="6">Belongs to the transferase hexapeptide repeat family. LpxA subfamily.</text>
    </comment>
    <dbReference type="EC" id="2.3.1.129" evidence="6"/>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX37565.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012206735.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_4936"/>
    <dbReference type="PRIDE" id="A9BMM0"/>
    <dbReference type="EnsemblBacteria" id="ABX37565">
        <property type="protein sequence ID" value="ABX37565"/>
        <property type="gene ID" value="Daci_4936"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_4936"/>
    <dbReference type="eggNOG" id="COG1043">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_061249_0_0_4"/>
    <dbReference type="OMA" id="ECVTINR"/>
    <dbReference type="UniPathway" id="UPA00359">
        <property type="reaction ID" value="UER00477"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008780">
        <property type="term" value="F:acyl-[acyl-carrier-protein]-UDP-N-acetylglucosamine O-acyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009245">
        <property type="term" value="P:lipid A biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd03351">
        <property type="entry name" value="LbH_UDP-GlcNAc_AT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.1180.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00387">
        <property type="entry name" value="LpxA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029098">
        <property type="entry name" value="Acetyltransf_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037157">
        <property type="entry name" value="Acetyltransf_C_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001451">
        <property type="entry name" value="Hexapep"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010137">
        <property type="entry name" value="Lipid_A_LpxA"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011004">
        <property type="entry name" value="Trimer_LpxA-like_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43480">
        <property type="entry name" value="PTHR43480"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13720">
        <property type="entry name" value="Acetyltransf_11"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00132">
        <property type="entry name" value="Hexapep"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF000456">
        <property type="entry name" value="UDP-GlcNAc_acltr"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51161">
        <property type="entry name" value="SSF51161"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01852">
        <property type="entry name" value="lipid_A_lpxA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5 6 8" id="KW-0012">Acyltransferase</keyword>
    <keyword evidence="6" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="2 6" id="KW-0441">Lipid A biosynthesis</keyword>
    <keyword evidence="1 6" id="KW-0444">Lipid biosynthesis</keyword>
    <keyword evidence="4 6" id="KW-0443">Lipid metabolism</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="6" id="KW-0677">Repeat</keyword>
    <keyword evidence="3 6 8" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Acetyltransf_11" evidence="7">
        <location>
            <begin position="179"/>
            <end position="263"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022516"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022556"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023098"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023315"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00387"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="Pfam" id="PF13720"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="ABX37565.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="265" mass="28121" checksum="9F425AF0BC058F7E" modified="2008-01-15" version="1">MAGIERIHPTALIDSAAQLDSSVSVGPYAVIGPHVEIGAGTTIGAHCVVEGHTRIGCDNRIFQFASLGAQPQDKKYAGEPTRLVIGDRNTVREFCTFNAGTVQDQGVTVIGHDNWIMAYVHVAHDCVVGSHTILANNATLAGHVHVGDHVILGGLTGVHQFTKVGAHAMAGFASHISQDVPPFMMVDGNPLSVRGFNIEGLRRRGFGPQRIQAIKQMHRLLYRQGLTLEAARDAIGALAGEQPEAAADVSLMLDFLGASTRGIAR</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="77" xmlns="http://uniprot.org/uniprot">
    <accession>A9BMM8</accession>
    <name>A9BMM8_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">Isoprenyl transferase</fullName>
            <ecNumber evidence="2">2.5.1.-</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Daci_4944</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="4" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="2">Catalyzes the condensation of isopentenyl diphosphate (IPP) with allylic pyrophosphates generating different type of terpenoids.</text>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="2">
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </cofactor>
        <text evidence="2">Binds 2 magnesium ions per subunit.</text>
    </comment>
    <comment type="subunit">
        <text evidence="2">Homodimer.</text>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the UPP synthase family.</text>
    </comment>
    <dbReference type="EC" id="2.5.1.-" evidence="2"/>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX37573.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012206743.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_4944"/>
    <dbReference type="PRIDE" id="A9BMM8"/>
    <dbReference type="EnsemblBacteria" id="ABX37573">
        <property type="protein sequence ID" value="ABX37573"/>
        <property type="gene ID" value="Daci_4944"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_4944"/>
    <dbReference type="eggNOG" id="COG0020">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_038505_1_1_4"/>
    <dbReference type="OMA" id="PRTEGHK"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000287">
        <property type="term" value="F:magnesium ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004659">
        <property type="term" value="F:prenyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd00475">
        <property type="entry name" value="Cis_IPPS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.1180.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01139">
        <property type="entry name" value="ISPT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001441">
        <property type="entry name" value="UPP_synth-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018520">
        <property type="entry name" value="UPP_synth-like_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036424">
        <property type="entry name" value="UPP_synth-like_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10291">
        <property type="entry name" value="PTHR10291"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01255">
        <property type="entry name" value="Prenyltransf"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF64005">
        <property type="entry name" value="SSF64005"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00055">
        <property type="entry name" value="uppS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01066">
        <property type="entry name" value="UPP_SYNTHASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2" id="KW-0460">Magnesium</keyword>
    <keyword evidence="2" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1 2 3" id="KW-0808">Transferase</keyword>
    <feature type="region of interest" description="Substrate binding" evidence="2">
        <location>
            <begin position="19"/>
            <end position="22"/>
        </location>
    </feature>
    <feature type="region of interest" description="Substrate binding" evidence="2">
        <location>
            <begin position="63"/>
            <end position="65"/>
        </location>
    </feature>
    <feature type="region of interest" description="Substrate binding" evidence="2">
        <location>
            <begin position="185"/>
            <end position="187"/>
        </location>
    </feature>
    <feature type="active site" evidence="2">
        <location>
            <position position="18"/>
        </location>
    </feature>
    <feature type="active site" description="Proton acceptor" evidence="2">
        <location>
            <position position="66"/>
        </location>
    </feature>
    <feature type="binding site" evidence="2">
        <location>
            <position position="18"/>
        </location>
        <ligand>
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="2">
        <location>
            <position position="23"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="2">
        <location>
            <position position="31"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="2">
        <location>
            <position position="35"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="2">
        <location>
            <position position="67"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="2">
        <location>
            <position position="69"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="2">
        <location>
            <position position="179"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="2">
        <location>
            <position position="198"/>
        </location>
        <ligand>
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01139"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ABX37573.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="248" mass="27456" checksum="F17CFB0AD7CFD761" modified="2008-01-15" version="1">MTNQDSGAVPRHIAVIMDGNGRWANRRFLPRLAGHKQGVESLRRCARACVQRGVQVLTVFAFSSENWNRPEEEVSGLMGLLANALAKEVQQLSRDGVRLHFIGDRSGLSEKVCAGLAQAEQVTAHNNRLVLNVCFNYGGRWDIAQAAARLAEQGEPITPQNLDRALALAHVPDPDLLIRTGGEMRISNFLLWQAAYSELFFSASLWPDFDEACLDEAIAAFTSRERRFGQTSAQVHQSQSKSSHQQTT</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="95" xmlns="http://uniprot.org/uniprot">
    <accession>A9BMN0</accession>
    <name>A9BMN0_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="6">Uridylate kinase</fullName>
            <shortName evidence="6">UK</shortName>
            <ecNumber evidence="6">2.7.4.22</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="6">Uridine monophosphate kinase</fullName>
            <shortName evidence="6">UMP kinase</shortName>
            <shortName evidence="6">UMPK</shortName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="6" type="primary">pyrH</name>
        <name evidence="8" type="ordered locus">Daci_4946</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="9" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="6">Catalyzes the reversible phosphorylation of UMP to UDP.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1 6">
            <text>ATP + UMP = ADP + UDP</text>
            <dbReference type="Rhea" id="RHEA:24400"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:57865"/>
            <dbReference type="ChEBI" id="CHEBI:58223"/>
            <dbReference type="ChEBI" id="CHEBI:456216"/>
            <dbReference type="EC" id="2.7.4.22"/>
        </reaction>
    </comment>
    <comment type="activity regulation">
        <text evidence="6">Inhibited by UTP.</text>
    </comment>
    <comment type="pathway">
        <text evidence="2 6">Pyrimidine metabolism; CTP biosynthesis via de novo pathway; UDP from UMP (UMPK route): step 1/1.</text>
    </comment>
    <comment type="subunit">
        <text evidence="6">Homohexamer.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="6">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="3 6">Belongs to the UMP kinase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="6">Lacks conserved residue(s) required for the propagation of feature annotation.</text>
    </comment>
    <dbReference type="EC" id="2.7.4.22" evidence="6"/>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX37575.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012206745.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_4946"/>
    <dbReference type="PRIDE" id="A9BMN0"/>
    <dbReference type="EnsemblBacteria" id="ABX37575">
        <property type="protein sequence ID" value="ABX37575"/>
        <property type="gene ID" value="Daci_4946"/>
    </dbReference>
    <dbReference type="GeneID" id="60689290"/>
    <dbReference type="KEGG" id="dac:Daci_4946"/>
    <dbReference type="eggNOG" id="COG0528">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_033861_0_0_4"/>
    <dbReference type="OMA" id="PIIVFDM"/>
    <dbReference type="UniPathway" id="UPA00159">
        <property type="reaction ID" value="UER00275"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0033862">
        <property type="term" value="F:UMP kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0044210">
        <property type="term" value="P:'de novo' CTP biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniPathway"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016310">
        <property type="term" value="P:phosphorylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd04254">
        <property type="entry name" value="AAK_UMPK-PyrH-Ec"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.1160.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01220_B">
        <property type="entry name" value="PyrH_B"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036393">
        <property type="entry name" value="AceGlu_kinase-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001048">
        <property type="entry name" value="Asp/Glu/Uridylate_kinase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011817">
        <property type="entry name" value="Uridylate_kinase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015963">
        <property type="entry name" value="Uridylate_kinase_bac"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00696">
        <property type="entry name" value="AA_kinase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF005650">
        <property type="entry name" value="Uridylate_kin"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53633">
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        <location>
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            <end position="218"/>
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    </feature>
    <feature type="binding site" evidence="6">
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            <begin position="14"/>
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        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
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        <location>
            <position position="56"/>
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        <ligand>
            <name>UMP</name>
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        </ligand>
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        <ligand>
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        </ligand>
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        </ligand>
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        </ligand>
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        </source>
    </evidence>
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        <source>
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        </source>
    </evidence>
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        <source>
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        </source>
    </evidence>
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        <source>
            <dbReference type="HAMAP-Rule" id="MF_01220"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="Pfam" id="PF00696"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="ABX37575.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="240" mass="25495" checksum="6EDD3B28E832C249" modified="2008-01-15" version="1">MSNAAPAHKRILLKLSGEALMGDDSFGINRATIERMVSEIAEVTRVGVQVAVVIGGGNIFRGVAGGSVGMDRATADYMGMLATVMNALALADAMDKQGLIARVMSAIAIEQVVEPYVRPKALQYLEEGKVVVFAAGTGNPFFTTDTAAALRGAEIGAEVVLKATKVDGVYTDDPMKNPNATRYHKLAFDEAISRNLGIMDATAFALCRDQKLPIRVFSIIKPGALKRVVMGEDEGTLVYA</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="56" xmlns="http://uniprot.org/uniprot">
    <accession>A9BN32</accession>
    <name>A9BN32_DELAS</name>
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        <submittedName>
            <fullName evidence="3">Membrane protein</fullName>
        </submittedName>
    </protein>
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        <name evidence="3" type="ordered locus">Daci_5098</name>
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        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
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            <taxon>Betaproteobacteria</taxon>
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        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
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                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
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            <dbReference type="PubMed" id="15240283"/>
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        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="4" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
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    <dbReference type="EnsemblBacteria" id="ABX37727">
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    </dbReference>
    <dbReference type="Pfam" id="PF03413">
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    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="1">
        <location>
            <begin position="1"/>
            <end position="22"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5002732930" evidence="1">
        <location>
            <begin position="23"/>
            <end position="101"/>
        </location>
    </feature>
    <feature type="domain" description="PepSY" evidence="2">
        <location>
            <begin position="45"/>
            <end position="96"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF03413"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ABX37727.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="101" mass="11335" checksum="4056158109D08B52" modified="2008-01-15" version="1">MLLAALLLMAAALASWTTPSDAGDSDHELARQALQQGRVLPLRTVLDQVERDYQGQVIKVEFEHDDGRFIYEIRLLQSGGRVAKLKIDARDGKVLSFKRKD</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="64" xmlns="http://uniprot.org/uniprot">
    <accession>A9BN70</accession>
    <name>A9BN70_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="4">Efflux pump membrane transporter</fullName>
        </recommendedName>
    </protein>
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        <name evidence="7" type="ordered locus">Daci_5136</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
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        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
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        </lineage>
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    <reference evidence="7 8" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
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                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
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            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="8" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
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                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="2 4">Cell inner membrane</location>
            <topology evidence="2 4">Multi-pass membrane protein</topology>
        </subcellularLocation>
        <subcellularLocation>
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            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="3 4">Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.</text>
    </comment>
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        <property type="protein sequence ID" value="ABX37765.1"/>
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        <property type="gene ID" value="Daci_5136"/>
    </dbReference>
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        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
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    <dbReference type="OMA" id="IMIVPMG"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015562">
        <property type="term" value="F:efflux transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0042908">
        <property type="term" value="P:xenobiotic transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
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        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027463">
        <property type="entry name" value="AcrB_DN_DC_subdom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001036">
        <property type="entry name" value="Acrflvin-R"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004764">
        <property type="entry name" value="HAE1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000731">
        <property type="entry name" value="SSD"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR32063">
        <property type="entry name" value="PTHR32063"/>
        <property type="match status" value="1"/>
    </dbReference>
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        <property type="entry name" value="ACR_tran"/>
        <property type="match status" value="1"/>
    </dbReference>
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        <property type="entry name" value="ACRIFLAVINRP"/>
    </dbReference>
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        <property type="entry name" value="SSF82714"/>
        <property type="match status" value="2"/>
    </dbReference>
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        <property type="entry name" value="2A0602"/>
        <property type="match status" value="1"/>
    </dbReference>
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        <property type="entry name" value="SSD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
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    <keyword evidence="4" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="4" id="KW-0472">Membrane</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="4" id="KW-1133">Transmembrane helix</keyword>
    <keyword evidence="4" id="KW-0813">Transport</keyword>
    <feature type="transmembrane region" description="Helical" evidence="4">
        <location>
            <begin position="31"/>
            <end position="53"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="4">
        <location>
            <begin position="362"/>
            <end position="381"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="4">
        <location>
            <begin position="388"/>
            <end position="408"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="4">
        <location>
            <begin position="414"/>
            <end position="438"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="4">
        <location>
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            <end position="479"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="4">
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        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="4">
        <location>
            <begin position="566"/>
            <end position="586"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="4">
        <location>
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    </feature>
    <feature type="transmembrane region" description="Helical" evidence="4">
        <location>
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        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="4">
        <location>
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    </feature>
    <feature type="transmembrane region" description="Helical" evidence="4">
        <location>
            <begin position="996"/>
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        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="4">
        <location>
            <begin position="1029"/>
            <end position="1055"/>
        </location>
    </feature>
    <feature type="domain" description="SSD" evidence="6">
        <location>
            <begin position="387"/>
            <end position="516"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="5">
        <location>
            <begin position="1065"/>
            <end position="1102"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00004429"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00010942"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="RuleBase" id="RU364070"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="PROSITE" id="PS50156"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="ABX37765.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="1102" mass="118321" checksum="1D2A419A49310F2A" modified="2008-01-15" version="1"> </sequence>
</entry>
<entry dataset="Swiss-Prot" created="2008-12-16" modified="2022-08-03" version="79" xmlns="http://uniprot.org/uniprot">
    <accession>A9BNB3</accession>
    <name>NUOB_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">NADH-quinone oxidoreductase subunit B</fullName>
            <ecNumber evidence="2">7.1.1.-</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="2">NADH dehydrogenase I subunit B</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="2">NDH-1 subunit B</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="2" type="primary">nuoB</name>
        <name type="ordered locus">Daci_5179</name>
    </gene>
    <organism>
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference key="1">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain>DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="1">NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="2">
            <text>a quinone + 5 H(+)(in) + NADH = a quinol + 4 H(+)(out) + NAD(+)</text>
            <dbReference type="Rhea" id="RHEA:57888"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:24646"/>
            <dbReference type="ChEBI" id="CHEBI:57540"/>
            <dbReference type="ChEBI" id="CHEBI:57945"/>
            <dbReference type="ChEBI" id="CHEBI:132124"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="2">
            <name>[4Fe-4S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:49883"/>
        </cofactor>
        <text evidence="2">Binds 1 [4Fe-4S] cluster.</text>
    </comment>
    <comment type="subunit">
        <text evidence="2">NDH-1 is composed of 14 different subunits. Subunits NuoB, C, D, E, F, and G constitute the peripheral sector of the complex.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="2">Cell inner membrane</location>
            <topology evidence="2">Peripheral membrane protein</topology>
            <orientation evidence="2">Cytoplasmic side</orientation>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the complex I 20 kDa subunit family.</text>
    </comment>
    <dbReference type="EC" id="7.1.1.-" evidence="2"/>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX37808.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012206978.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A9BNB3"/>
    <dbReference type="SMR" id="A9BNB3"/>
    <dbReference type="STRING" id="398578.Daci_5179"/>
    <dbReference type="PRIDE" id="A9BNB3"/>
    <dbReference type="EnsemblBacteria" id="ABX37808">
        <property type="protein sequence ID" value="ABX37808"/>
        <property type="gene ID" value="Daci_5179"/>
    </dbReference>
    <dbReference type="GeneID" id="60689529"/>
    <dbReference type="KEGG" id="dac:Daci_5179"/>
    <dbReference type="eggNOG" id="COG0377">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_055737_7_3_4"/>
    <dbReference type="OMA" id="AGWVRKS"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051539">
        <property type="term" value="F:4 iron, 4 sulfur cluster binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005506">
        <property type="term" value="F:iron ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008137">
        <property type="term" value="F:NADH dehydrogenase (ubiquinone) activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0048038">
        <property type="term" value="F:quinone binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01356">
        <property type="entry name" value="NDH1_NuoB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006137">
        <property type="entry name" value="NADH_UbQ_OxRdtase-like_20kDa"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006138">
        <property type="entry name" value="NADH_UQ_OxRdtase_20Kd_su"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01058">
        <property type="entry name" value="Oxidored_q6"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01957">
        <property type="entry name" value="nuoB_fam"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01150">
        <property type="entry name" value="COMPLEX1_20K"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword id="KW-0004">4Fe-4S</keyword>
    <keyword id="KW-0997">Cell inner membrane</keyword>
    <keyword id="KW-1003">Cell membrane</keyword>
    <keyword id="KW-0408">Iron</keyword>
    <keyword id="KW-0411">Iron-sulfur</keyword>
    <keyword id="KW-0472">Membrane</keyword>
    <keyword id="KW-0479">Metal-binding</keyword>
    <keyword id="KW-0520">NAD</keyword>
    <keyword id="KW-0874">Quinone</keyword>
    <keyword id="KW-1185">Reference proteome</keyword>
    <keyword id="KW-1278">Translocase</keyword>
    <keyword id="KW-0813">Transport</keyword>
    <keyword id="KW-0830">Ubiquinone</keyword>
    <feature type="chain" id="PRO_0000358402" description="NADH-quinone oxidoreductase subunit B">
        <location>
            <begin position="1"/>
            <end position="159"/>
        </location>
    </feature>
    <feature type="binding site" evidence="2">
        <location>
            <position position="36"/>
        </location>
        <ligand>
            <name>[4Fe-4S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:49883"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="2">
        <location>
            <position position="37"/>
        </location>
        <ligand>
            <name>[4Fe-4S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:49883"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="2">
        <location>
            <position position="102"/>
        </location>
        <ligand>
            <name>[4Fe-4S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:49883"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="2">
        <location>
            <position position="132"/>
        </location>
        <ligand>
            <name>[4Fe-4S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:49883"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000250" key="1"/>
    <evidence type="ECO:0000255" key="2">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01356"/>
        </source>
    </evidence>
    <sequence length="159" mass="17602" checksum="E27ABB45C8F5E921" modified="2008-01-15" version="1">MIEGVMKEGFITTSYDSVVNWAKTGSLWPMTFGLACCAVEMMHAAAARYDIGRFGSEVFRASPRQSDLMIVAGTLCNKMAPAMRKVYDQMSEPRWVISMGSCANGGGYYHYSYSVVRGCDRIVPVDVYVPGCPPTAEALIYGIIQLQQKIRRTHTIARV</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="72" xmlns="http://uniprot.org/uniprot">
    <accession>A9BNL5</accession>
    <name>A9BNL5_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">Pseudouridine synthase</fullName>
            <ecNumber evidence="3">5.4.99.-</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="5" type="ordered locus">Daci_5281</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="6" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="3">Responsible for synthesis of pseudouridine from uracil.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="3">
            <text>a uridine in RNA = a pseudouridine in RNA</text>
            <dbReference type="Rhea" id="RHEA:48348"/>
            <dbReference type="Rhea" id="RHEA-COMP:12068"/>
            <dbReference type="Rhea" id="RHEA-COMP:12069"/>
            <dbReference type="ChEBI" id="CHEBI:65314"/>
            <dbReference type="ChEBI" id="CHEBI:65315"/>
        </reaction>
    </comment>
    <comment type="similarity">
        <text evidence="1 3">Belongs to the pseudouridine synthase RluA family.</text>
    </comment>
    <dbReference type="EC" id="5.4.99.-" evidence="3"/>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX37910.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_5281"/>
    <dbReference type="PRIDE" id="A9BNL5"/>
    <dbReference type="EnsemblBacteria" id="ABX37910">
        <property type="protein sequence ID" value="ABX37910"/>
        <property type="gene ID" value="Daci_5281"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_5281"/>
    <dbReference type="eggNOG" id="COG0564">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_016902_1_1_4"/>
    <dbReference type="OMA" id="PKTHVYR"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003723">
        <property type="term" value="F:RNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0120159">
        <property type="term" value="F:rRNA pseudouridine synthase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000455">
        <property type="term" value="P:enzyme-directed rRNA pseudouridine synthesis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="CDD" id="cd02869">
        <property type="entry name" value="PseudoU_synth_RluA_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="CDD" id="cd00165">
        <property type="entry name" value="S4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.10.290.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020103">
        <property type="entry name" value="PsdUridine_synth_cat_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006225">
        <property type="entry name" value="PsdUridine_synth_RluC/D"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006224">
        <property type="entry name" value="PsdUridine_synth_RluC/D_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006145">
        <property type="entry name" value="PsdUridine_synth_RsuA/RluA"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002942">
        <property type="entry name" value="S4_RNA-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036986">
        <property type="entry name" value="S4_RNA-bd_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00849">
        <property type="entry name" value="PseudoU_synth_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01479">
        <property type="entry name" value="S4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00363">
        <property type="entry name" value="S4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55120">
        <property type="entry name" value="SSF55120"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00005">
        <property type="entry name" value="rluA_subfam"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01129">
        <property type="entry name" value="PSI_RLU"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-0413">Isomerase</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="S4" evidence="4">
        <location>
            <begin position="62"/>
            <end position="125"/>
        </location>
    </feature>
    <feature type="active site" evidence="2">
        <location>
            <position position="183"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00010876"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="PIRSR" id="PIRSR606225-1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="RuleBase" id="RU362028"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="SMART" id="SM00363"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="ABX37910.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="362" mass="40414" checksum="BE228C3BDA2918FB" modified="2008-01-15" version="1">MASTCLCGEMVVWTKLHENQPLINSSAQVKHIIEGKPADDRSLNAATAAVRLIEVDDDSAGQRLDNFLIRHLKGVPKTHVYRIIRSGEVRINKGRVSAETRVSTGDIVRIPPVRISEKVAEKAERPAPARDFPSLLEDEHLIAIDKPAGVAVHGGSGVSFGVIEQLRQARPQSRFLELVHRLDRETSGILLVAKKRSALTHLQDQFRERETGKTYLALVQGTWPANHKVIDLPLHKYLQADGERRVRVTTADDPDGMRSVTLVRVRSTLAPQPLLGLPAMSLLEVTIKTGRTHQIRVHLSSQGHPIAGDDKYGDFDLNRRLQKQGLKRMFLHAWRLQFTHPASGERVELRAELPEELARFAG</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="55" xmlns="http://uniprot.org/uniprot">
    <accession>A9BP64</accession>
    <name>A9BP64_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Lytic transglycosylase catalytic</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_5480</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX38109.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_5480"/>
    <dbReference type="CAZy" id="GH23">
        <property type="family name" value="Glycoside Hydrolase Family 23"/>
    </dbReference>
    <dbReference type="PRIDE" id="A9BP64"/>
    <dbReference type="EnsemblBacteria" id="ABX38109">
        <property type="protein sequence ID" value="ABX38109"/>
        <property type="gene ID" value="Daci_5480"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_5480"/>
    <dbReference type="eggNOG" id="COG0741">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_088197_0_0_4"/>
    <dbReference type="OMA" id="GYMQVMP"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023346">
        <property type="entry name" value="Lysozyme-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008258">
        <property type="entry name" value="Transglycosylase_SLT_dom_1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01464">
        <property type="entry name" value="SLT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53955">
        <property type="entry name" value="SSF53955"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="SLT" evidence="1">
        <location>
            <begin position="82"/>
            <end position="172"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF01464"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX38109.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="194" mass="21738" checksum="17BE5AACDDB91F20" modified="2008-01-15" version="1">MLGAVAAPAWAGGQLEEPLADSVRTALSSAVTGSAPPELRFASTEARMDYLRWLTASSERLRSRKPELATRLEFLQTVWYESKRAGLEVSLVMGLVQVESAFRKFAISSVGARGYMQIMPFWMRLIGDGDIGKLFHMQTNLRFGCVILRHYLDRENGDAYMALGRYNGSRGQPQYPNAVFAAQRRWEIEPSRSA</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="57" xmlns="http://uniprot.org/uniprot">
    <accession>A9BPF8</accession>
    <name>A9BPF8_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Formamidase</fullName>
            <ecNumber evidence="1">3.5.1.49</ecNumber>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Daci_0179</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="2" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EC" id="3.5.1.49" evidence="1"/>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX32825.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012202118.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_0179"/>
    <dbReference type="PRIDE" id="A9BPF8"/>
    <dbReference type="EnsemblBacteria" id="ABX32825">
        <property type="protein sequence ID" value="ABX32825"/>
        <property type="gene ID" value="Daci_0179"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_0179"/>
    <dbReference type="eggNOG" id="COG2421">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_032013_0_1_4"/>
    <dbReference type="OMA" id="PWGFTGI"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004328">
        <property type="term" value="F:formamidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004304">
        <property type="entry name" value="FmdA_AmdA"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR31891">
        <property type="entry name" value="PTHR31891"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03069">
        <property type="entry name" value="FmdA_AmdA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ABX32825.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="410" mass="44658" checksum="C639EFC8E525A7D1" modified="2008-01-15" version="1">MTDTLIKVDLNRPPTDNERVHNRWHPDIPMACWVQPGDDFILETYDWTGGFIKNNDSADDVRDIDLTTVHYLSGPVGVKGAQPGDLLVVDLLDIGAKPDSLWGFNGFFSKNNGGGFLTDHFPSAQKSIWDFKGMFTSSRHIPGVNFPGLIHPGLIGCLPDRPMLEMWNERERALIATDPDRVPGLANPPSAGTAHMGQMRGEARDKAAAEGARTVPPREHGGNCDIKDLSRGAKVFFPVYVDGAGLSVGDLHFSQGDGEITFCGAIEMAGWVHMKVSLIKGGMAKYGIKNPIFKPSPITPRYDDYLIFEGISVDESGRQHYLDVNVAYRQACLNAIEYLKKFGYSGAQAYSILGTAPVQGHISGVVDVPNSCATLWLPTGIFDFDINPNAAGPVVQFDGSIDMPLSPDLR</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="76" xmlns="http://uniprot.org/uniprot">
    <accession>A9BPJ0</accession>
    <name>A9BPJ0_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="5">Glutamate dehydrogenase</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="11" type="ordered locus">Daci_0211</name>
    </gene>
    <organism evidence="11 12">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="11 12" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="12">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="12" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="12">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="2">Catalyzes the reversible oxidative deamination of glutamate to alpha-ketoglutarate and ammonia.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>H2O + L-glutamate + NADP(+) = 2-oxoglutarate + H(+) + NADPH + NH4(+)</text>
            <dbReference type="Rhea" id="RHEA:11612"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:16810"/>
            <dbReference type="ChEBI" id="CHEBI:28938"/>
            <dbReference type="ChEBI" id="CHEBI:29985"/>
            <dbReference type="ChEBI" id="CHEBI:57783"/>
            <dbReference type="ChEBI" id="CHEBI:58349"/>
            <dbReference type="EC" id="1.4.1.4"/>
        </reaction>
    </comment>
    <comment type="similarity">
        <text evidence="3 5 9">Belongs to the Glu/Leu/Phe/Val dehydrogenases family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX32857.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012202150.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="SMR" id="A9BPJ0"/>
    <dbReference type="STRING" id="398578.Daci_0211"/>
    <dbReference type="PRIDE" id="A9BPJ0"/>
    <dbReference type="EnsemblBacteria" id="ABX32857">
        <property type="protein sequence ID" value="ABX32857"/>
        <property type="gene ID" value="Daci_0211"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_0211"/>
    <dbReference type="eggNOG" id="COG0334">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_025763_1_2_4"/>
    <dbReference type="OMA" id="WLQNRNG"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004353">
        <property type="term" value="F:glutamate dehydrogenase [NAD(P)+] activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000166">
        <property type="term" value="F:nucleotide binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006520">
        <property type="term" value="P:cellular amino acid metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd01076">
        <property type="entry name" value="NAD_bind_1_Glu_DH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR046346">
        <property type="entry name" value="Aminiacid_DH-like_N_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006095">
        <property type="entry name" value="Glu/Leu/Phe/Val_DH"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR033524">
        <property type="entry name" value="Glu/Leu/Phe/Val_DH_AS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006096">
        <property type="entry name" value="Glu/Leu/Phe/Val_DH_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006097">
        <property type="entry name" value="Glu/Leu/Phe/Val_DH_dimer_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014362">
        <property type="entry name" value="Glu_DH"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036291">
        <property type="entry name" value="NAD(P)-bd_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR033922">
        <property type="entry name" value="NAD_bind_Glu_DH"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00208">
        <property type="entry name" value="ELFV_dehydrog"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02812">
        <property type="entry name" value="ELFV_dehydrog_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF000185">
        <property type="entry name" value="Glu_DH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00082">
        <property type="entry name" value="GLFDHDRGNASE"/>
    </dbReference>
    <dbReference type="SMART" id="SM00839">
        <property type="entry name" value="ELFV_dehydrog"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51735">
        <property type="entry name" value="SSF51735"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53223">
        <property type="entry name" value="SSF53223"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00074">
        <property type="entry name" value="GLFV_DEHYDROGENASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="7" id="KW-0520">NAD</keyword>
    <keyword evidence="7" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="4 5 9" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="12" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="ELFV_dehydrog" evidence="10">
        <location>
            <begin position="201"/>
            <end position="431"/>
        </location>
    </feature>
    <feature type="active site" description="Proton donor" evidence="6">
        <location>
            <position position="124"/>
        </location>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <position position="88"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <position position="112"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <position position="208"/>
        </location>
        <ligand>
            <name>NAD(+)</name>
            <dbReference type="ChEBI" id="CHEBI:57540"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <position position="239"/>
        </location>
        <ligand>
            <name>NAD(+)</name>
            <dbReference type="ChEBI" id="CHEBI:57540"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <position position="367"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="site" description="Important for catalysis" evidence="8">
        <location>
            <position position="164"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001463"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00003868"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00006382"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023002"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="PIRNR" id="PIRNR000185"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="PIRSR" id="PIRSR000185-1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="PIRSR" id="PIRSR000185-2"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="PIRSR" id="PIRSR000185-3"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="RuleBase" id="RU004417"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="10">
        <source>
            <dbReference type="SMART" id="SM00839"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="EMBL" id="ABX32857.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="434" mass="46235" checksum="283F79C2D44F6532" modified="2008-01-15" version="1">MQQPASAGVTNHAIPSYLQADHLGPWGNYLQQVDRVTPYLGHLARWVETLKRPKRILIVDVPIELDNGTIAHYEGYRVQHNLSRGPGKGGVRFHQDVTLSEVMALSAWMSVKNAAVNVPYGGAKGGIRVDPKTLSRGELERLTRRYTSEIGLLIGPSKDIPAPDVNTNGQIMAWMMDTYSMNTGATATGVVTGKPVDLGGSLGRVEATGRGVFTVGVEAAKLTGLSVQGARIAVQGFGNVGGTAGKLFADVGAKVVAVQDHTGTIHNANGLDVPALLAHVAAKGGVGGFDGAEAMDAADFWSVDCDILIPAALEGQITKENAGKIKAKMVIEGANGPTTTEADDILTEKGVLVLPDVLANAGGVTVSYFEWVQDFSSFFWSEDEINARLVRIMQDAFAAIWQVAQQHGVTLRTATFIVACQRILHAREMRGLYP</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="72" xmlns="http://uniprot.org/uniprot">
    <accession>A9BPM1</accession>
    <name>A9BPM1_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">Pseudouridine synthase</fullName>
            <ecNumber evidence="3">5.4.99.-</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="6" type="ordered locus">Daci_0242</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="7" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1 3">Belongs to the pseudouridine synthase RsuA family.</text>
    </comment>
    <dbReference type="EC" id="5.4.99.-" evidence="3"/>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX32888.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012202181.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_0242"/>
    <dbReference type="PRIDE" id="A9BPM1"/>
    <dbReference type="EnsemblBacteria" id="ABX32888">
        <property type="protein sequence ID" value="ABX32888"/>
        <property type="gene ID" value="Daci_0242"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_0242"/>
    <dbReference type="eggNOG" id="COG1187">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_024979_8_1_4"/>
    <dbReference type="OMA" id="HPRTYWV"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0140098">
        <property type="term" value="F:catalytic activity, acting on RNA"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009982">
        <property type="term" value="F:pseudouridine synthase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003723">
        <property type="term" value="F:RNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0034470">
        <property type="term" value="P:ncRNA processing"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="GO" id="GO:0001522">
        <property type="term" value="P:pseudouridine synthesis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.70.1560">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.70.580">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR042092">
        <property type="entry name" value="PsdUridine_s_RsuA/RluB/E/F_cat"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020103">
        <property type="entry name" value="PsdUridine_synth_cat_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006145">
        <property type="entry name" value="PsdUridine_synth_RsuA/RluA"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000748">
        <property type="entry name" value="PsdUridine_synth_RsuA/RluB/E/F"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018496">
        <property type="entry name" value="PsdUridine_synth_RsuA/RluB_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020094">
        <property type="entry name" value="TruA/RsuA/RluB/E/F_N"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00849">
        <property type="entry name" value="PseudoU_synth_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55120">
        <property type="entry name" value="SSF55120"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00093">
        <property type="entry name" value="TIGR00093"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01149">
        <property type="entry name" value="PSI_RSU"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2 3" id="KW-0413">Isomerase</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="PseudoU_synth_2" evidence="5">
        <location>
            <begin position="34"/>
            <end position="179"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="4">
        <location>
            <begin position="1"/>
            <end position="27"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00008348"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023235"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="RuleBase" id="RU003887"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="Pfam" id="PF00849"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="ABX32888.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="211" mass="23782" checksum="DB149236EC6AC1D5" modified="2008-01-15" version="1">MQPRKRPPSRSFAGPSRRLQTAFADRPDTGPSRLLCFNKPYGVLSQFTPEGRWRGLKEYIDVPGVHAAGRLDADSEGLLLLTNDGPLQARIADPRFKMEKTYWVQVEGLPDEAALQALRQGVQLNDGMTLPAQARRLEPPPVLWQRDPPIRVRQNIPDCWIELVIREGRNRQVRRMTAAIGHPTLRLVRAAIGPYTLDGLEPGQWKDVEPA</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="63" xmlns="http://uniprot.org/uniprot">
    <accession>A9BPM3</accession>
    <name>A9BPM3_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="7">LrgA family protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ordered locus">Daci_0244</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="8" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX32890.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012202183.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_0244"/>
    <dbReference type="PRIDE" id="A9BPM3"/>
    <dbReference type="EnsemblBacteria" id="ABX32890">
        <property type="protein sequence ID" value="ABX32890"/>
        <property type="gene ID" value="Daci_0244"/>
    </dbReference>
    <dbReference type="GeneID" id="60690649"/>
    <dbReference type="KEGG" id="dac:Daci_0244"/>
    <dbReference type="eggNOG" id="COG1380">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_113736_3_0_4"/>
    <dbReference type="OMA" id="NWVRAGA"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005538">
        <property type="entry name" value="LrgA/CidA"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33931">
        <property type="entry name" value="PTHR33931"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03788">
        <property type="entry name" value="LrgA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="5 6" id="KW-0472">Membrane</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 6" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="4 6" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="21"/>
            <end position="42"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="48"/>
            <end position="71"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="83"/>
            <end position="100"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="112"/>
            <end position="136"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="ABX32890.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="157" mass="17407" checksum="E2CF02173A14792A" modified="2008-01-15" version="1">MSKISAMPVLRPQVFQGLLHRCWPLLRGVLQVGLLSALWVAMEAVRAHFGWGMPAGLIGFALLATGLFSGLVKARWLQGGTNWLLAEMLLFFVPAMLVVTEYTDLIQHQGLRILGVIVASTACVMAATALAVDRVYRLELWLARRRSTRAGLHREQE</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2021-09-29" version="60" xmlns="http://uniprot.org/uniprot">
    <accession>A9BPT0</accession>
    <name>A9BPT0_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Cytochrome B561</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ordered locus">Daci_0403</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="6" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX33049.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_0403"/>
    <dbReference type="EnsemblBacteria" id="ABX33049">
        <property type="protein sequence ID" value="ABX33049"/>
        <property type="gene ID" value="Daci_0403"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_0403"/>
    <dbReference type="eggNOG" id="COG3658">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_078451_0_0_4"/>
    <dbReference type="OMA" id="NPLGGYM"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009055">
        <property type="term" value="F:electron transfer activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0022904">
        <property type="term" value="P:respiratory electron transport chain"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011577">
        <property type="entry name" value="Cyt_b561_bac/Ni-Hgenase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016174">
        <property type="entry name" value="Di-haem_cyt_TM"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01292">
        <property type="entry name" value="Ni_hydr_CYTB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF81342">
        <property type="entry name" value="SSF81342"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="3" id="KW-0472">Membrane</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="3" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="3">
        <location>
            <begin position="44"/>
            <end position="63"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="3">
        <location>
            <begin position="69"/>
            <end position="87"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="3">
        <location>
            <begin position="180"/>
            <end position="198"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="3">
        <location>
            <begin position="229"/>
            <end position="246"/>
        </location>
    </feature>
    <feature type="domain" description="Ni_hydr_CYTB" evidence="4">
        <location>
            <begin position="38"/>
            <end position="210"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="1"/>
            <end position="25"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="Pfam" id="PF01292"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="ABX33049.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="252" mass="27180" checksum="5201C0482A03D226" modified="2008-01-15" version="1">MPHPHPHPHPHPHPHPSFHAMAQESTAQGAAKHKVRIWDLPTRLFHWLLAATVVGLVVTAKLGGNAMNWHLLLGHAMLALLLFRLLWGLVGGRWSRFASFIHAPATVLRHVRGQGTESDSAGHSPLGALSVFAMLAVLIAQVGSGLLSDDEIAFSGPLSRFVSGDTVAQATAYHAHWGQYLLYALVALHLLAILFYAWRGRGLVRAMVTGDKHLPEPLPSSRDTAASRLLALVLALVAGAAAWWVQQLGGAF</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="38" xmlns="http://uniprot.org/uniprot">
    <accession>A9BPU9</accession>
    <name>A9BPU9_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_0422</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX33068.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012202359.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_0422"/>
    <dbReference type="PRIDE" id="A9BPU9"/>
    <dbReference type="EnsemblBacteria" id="ABX33068">
        <property type="protein sequence ID" value="ABX33068"/>
        <property type="gene ID" value="Daci_0422"/>
    </dbReference>
    <dbReference type="GeneID" id="60690829"/>
    <dbReference type="KEGG" id="dac:Daci_0422"/>
    <dbReference type="eggNOG" id="ENOG5034953">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_2449522_0_0_4"/>
    <dbReference type="OMA" id="SCKLKED"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="1">
        <location>
            <begin position="1"/>
            <end position="21"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5002735667" evidence="1">
        <location>
            <begin position="22"/>
            <end position="86"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX33068.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="86" mass="9513" checksum="D05DD625834C01FA" modified="2008-01-15" version="1">MKNTLARLGLLAAVLTLSACASPILDDSQEYDYVLSCKLREDDPKRCEQQIRALCPVPAKAVTHKSRTVDPKDNAVTYVYQARCGD</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="54" xmlns="http://uniprot.org/uniprot">
    <accession>A9BQ46</accession>
    <name>A9BQ46_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Acyl carrier protein-related protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_0615</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX33261.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012202547.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_0615"/>
    <dbReference type="PRIDE" id="A9BQ46"/>
    <dbReference type="EnsemblBacteria" id="ABX33261">
        <property type="protein sequence ID" value="ABX33261"/>
        <property type="gene ID" value="Daci_0615"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_0615"/>
    <dbReference type="eggNOG" id="COG0236">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_108696_20_5_4"/>
    <dbReference type="OMA" id="EDIRSAH"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.1200.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036736">
        <property type="entry name" value="ACP-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009081">
        <property type="entry name" value="PP-bd_ACP"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00550">
        <property type="entry name" value="PP-binding"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47336">
        <property type="entry name" value="SSF47336"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Carrier" evidence="1">
        <location>
            <begin position="20"/>
            <end position="73"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF00550"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX33261.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="74" mass="8217" checksum="10D263C3A251A7D3" modified="2008-01-15" version="1">MPSIDQFIESFLTAVDFQEAVEVTPETELRSLPEWDSLAALGVIVMFDVDYGKTITGDDLKNCSTITDLYKLLG</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-01-19" version="73" xmlns="http://uniprot.org/uniprot">
    <accession>A9BQA0</accession>
    <name>A9BQA0_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="6">Pilin</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ordered locus">Daci_0864</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="7" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1 4">Belongs to the N-Me-Phe pilin family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX33510.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012202796.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_0864"/>
    <dbReference type="EnsemblBacteria" id="ABX33510">
        <property type="protein sequence ID" value="ABX33510"/>
        <property type="gene ID" value="Daci_0864"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_0864"/>
    <dbReference type="eggNOG" id="COG4969">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_091705_4_0_4"/>
    <dbReference type="OMA" id="VLWVCAA"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009289">
        <property type="term" value="C:pilus"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0007155">
        <property type="term" value="P:cell adhesion"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012902">
        <property type="entry name" value="N_methyl_site"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001082">
        <property type="entry name" value="Pilin"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045584">
        <property type="entry name" value="Pilin-like"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07963">
        <property type="entry name" value="N_methyl"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00114">
        <property type="entry name" value="Pilin"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54523">
        <property type="entry name" value="SSF54523"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR02532">
        <property type="entry name" value="IV_pilin_GFxxxE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00409">
        <property type="entry name" value="PROKAR_NTER_METHYL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-1015">Disulfide bond</keyword>
    <keyword evidence="4" id="KW-0281">Fimbrium</keyword>
    <keyword evidence="5" id="KW-0472">Membrane</keyword>
    <keyword evidence="2" id="KW-0488">Methylation</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="5" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="5" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="12"/>
            <end position="32"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00005233"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022481"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023157"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="RuleBase" id="RU000389"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="ABX33510.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="163" mass="16469" checksum="E3936047245AF473" modified="2008-01-15" version="1">MKRSIQQGFTLIELMIVVAIIGILAAVALPAYQDYTTRAKVTEGLSLAAAAKVAVAENAANGKPYNAGWMPPNATNNVAGVTIDQAAGYITITYQTGIAGAGTLILNPIDGPKTSGTAFSGGTSTSSNIPTSGSISWNCRAAGSTGVGTAGTIQAKYTPAECR</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="76" xmlns="http://uniprot.org/uniprot">
    <accession>A9BQV3</accession>
    <name>A9BQV3_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="8">ABC transporter related</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="8" type="ordered locus">Daci_0262</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="9" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX32908.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012202201.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_0262"/>
    <dbReference type="PRIDE" id="A9BQV3"/>
    <dbReference type="EnsemblBacteria" id="ABX32908">
        <property type="protein sequence ID" value="ABX32908"/>
        <property type="gene ID" value="Daci_0262"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_0262"/>
    <dbReference type="eggNOG" id="COG0411">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_000604_1_2_4"/>
    <dbReference type="OMA" id="VEHDMPM"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003593">
        <property type="entry name" value="AAA+_ATPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003439">
        <property type="entry name" value="ABC_transporter-like_ATP-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR032823">
        <property type="entry name" value="BCA_ABC_TP_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00005">
        <property type="entry name" value="ABC_tran"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12399">
        <property type="entry name" value="BCA_ABC_TP_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00382">
        <property type="entry name" value="AAA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50893">
        <property type="entry name" value="ABC_TRANSPORTER_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3 6" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="1" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="5" id="KW-0472">Membrane</keyword>
    <keyword evidence="2 6" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4" id="KW-1278">Translocase</keyword>
    <feature type="domain" description="ABC transporter" evidence="7">
        <location>
            <begin position="2"/>
            <end position="249"/>
        </location>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <begin position="34"/>
            <end position="41"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022967"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00434"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="PROSITE" id="PS50893"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="ABX32908.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="254" mass="27650" checksum="FE32B5E57475541C" modified="2008-01-15" version="1">MLKIDHLTKTFGGLAAVSDVSTVIEEGRINAIIGPNGAGKTTFFNLISCVHKPTSGTITFNGQDVTSLRTDQVAKLGVARTFQTTALFDRATVLDNLIVGHRLRTRSGLWDVLRGSSRLREEERVCREKARDALDFVGLSHVAGRIAGDITQEERKRVAFALALATDPKLMLLDEPAGGVNPEETEGLAELIRKLVRHGITVALIEHKMGMIMSLADKILVLSYGEKIAEGTPEEIRRNPAVIDAYLGSEHAEV</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="60" xmlns="http://uniprot.org/uniprot">
    <accession>A9BRK0</accession>
    <name>A9BRK0_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ordered locus">Daci_0715</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="5" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Periplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the UPF0065 (bug) family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX33361.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012202647.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_0715"/>
    <dbReference type="PRIDE" id="A9BRK0"/>
    <dbReference type="EnsemblBacteria" id="ABX33361">
        <property type="protein sequence ID" value="ABX33361"/>
        <property type="gene ID" value="Daci_0715"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_0715"/>
    <dbReference type="eggNOG" id="COG3181">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_045683_0_0_4"/>
    <dbReference type="OMA" id="TTHGANP"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0042597">
        <property type="term" value="C:periplasmic space"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.190.150">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005064">
        <property type="entry name" value="BUG"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR042100">
        <property type="entry name" value="Bug_dom1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006311">
        <property type="entry name" value="TAT_signal"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR42928">
        <property type="entry name" value="PTHR42928"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03401">
        <property type="entry name" value="TctC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF017082">
        <property type="entry name" value="YflP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51318">
        <property type="entry name" value="TAT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="3">
        <location>
            <begin position="1"/>
            <end position="29"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5002735970" evidence="3">
        <location>
            <begin position="30"/>
            <end position="327"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004418"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00006987"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="ABX33361.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="327" mass="34019" checksum="04824E4DC5076CF4" modified="2008-01-15" version="1">MNLSHNFPRRHVLALAACALAAAAAPALAQDYPSKPITFVVPFAAGSATDQLARALGQAVTTATKQAVVVENKGGASGMIAAQQVARSAADGYTVLITTNTTHAANQHLYKKLPYDAVKDFAPVAGLGKGGQVLVVRADAPYRNVGDLLAAAKKQPGKLSFGSGSSSSRVAGEMLKQLAGVDLMHVPYKSNPLAITDLLGGQIDLMITDTSTGVPQVKSGKLRALGYSTTKRSPQLPEVPTLEEAGVKGYDMGYWFAAYAPAGTPEAVVARLNRLLSDAVHSAGAKSFFEMSGSEGWTATPQELAAFQAGETQKWGQVIKAAGIQPE</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="77" xmlns="http://uniprot.org/uniprot">
    <accession>A9BRL7</accession>
    <name>A9BRL7_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Short-chain dehydrogenase/reductase SDR</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Daci_0732</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="2" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX33378.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012202664.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_0732"/>
    <dbReference type="PRIDE" id="A9BRL7"/>
    <dbReference type="EnsemblBacteria" id="ABX33378">
        <property type="protein sequence ID" value="ABX33378"/>
        <property type="gene ID" value="Daci_0732"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_0732"/>
    <dbReference type="eggNOG" id="COG1028">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_010194_1_3_4"/>
    <dbReference type="OMA" id="DVNCGEF"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016491">
        <property type="term" value="F:oxidoreductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036291">
        <property type="entry name" value="NAD(P)-bd_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020904">
        <property type="entry name" value="Sc_DH/Rdtase_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002347">
        <property type="entry name" value="SDR_fam"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00081">
        <property type="entry name" value="GDHRDH"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00080">
        <property type="entry name" value="SDRFAMILY"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51735">
        <property type="entry name" value="SSF51735"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00061">
        <property type="entry name" value="ADH_SHORT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ABX33378.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="249" mass="25353" checksum="D89ED62E725995E0" modified="2008-01-15" version="1">MLLKDRVAIITGGAGINGLGFATARQMAAQGARVAILDLERADPAGAAARLGDGHLGLVADVTDKPSCEAAAAAVLRAFGRIDALVNNAGITQAVGTLEIGGADYDRVLDVSLRGTLYMSQAVLPSMRRQQAGAIVCISSVSAQRGGGIFGGPHYSAAKAGVLGLARAMAREFGGDGIRINCVTPGLIETDITQGKLGPERKREISATIPLARLGRADDVAGACVFLASDLAGYCTGITLDVNGGMLIH</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="80" xmlns="http://uniprot.org/uniprot">
    <accession>A9BRP7</accession>
    <name>A9BRP7_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Transcriptional regulator, LysR family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Daci_0968</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="4" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the LysR transcriptional regulatory family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX33614.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012202900.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_0968"/>
    <dbReference type="PRIDE" id="A9BRP7"/>
    <dbReference type="EnsemblBacteria" id="ABX33614">
        <property type="protein sequence ID" value="ABX33614"/>
        <property type="gene ID" value="Daci_0968"/>
    </dbReference>
    <dbReference type="GeneID" id="60685532"/>
    <dbReference type="KEGG" id="dac:Daci_0968"/>
    <dbReference type="eggNOG" id="COG0583">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_039613_16_4_4"/>
    <dbReference type="OMA" id="ERSEWDV"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003700">
        <property type="term" value="F:DNA-binding transcription factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005119">
        <property type="entry name" value="LysR_subst-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000847">
        <property type="entry name" value="Tscrpt_reg_HTH_LysR"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036390">
        <property type="entry name" value="WH_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00126">
        <property type="entry name" value="HTH_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03466">
        <property type="entry name" value="LysR_substrate"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00039">
        <property type="entry name" value="HTHLYSR"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46785">
        <property type="entry name" value="SSF46785"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50931">
        <property type="entry name" value="HTH_LYSR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HTH lysR-type" evidence="2">
        <location>
            <begin position="1"/>
            <end position="59"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00009437"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS50931"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ABX33614.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="302" mass="33341" checksum="8E84492FF26C707A" modified="2008-01-15" version="1">MIAIEDLQLAAALLRESSLSAAARALDVTPPALSMRLRRLEAELGLSLANRSARRLALTPEGERFAREAVRLLGQIEELRDSLHGDARQLGGTLRIAAPFGYGRSRLAPALVPFTRQHPQLKLQLDLRETPFPDRHDADAVVHIGAVRDSSWVARELAANDRWLCASPDYLRRHGTPATPRELLEHACICIRENEEDVTLWHLRPAASRRAADGQTLRVTPSYVTNDGGVARHWAEQGLGLVLRSQWDMEQAVAEGRLVRVLPDWHFGSAPVTLLVPTRKGRTARVQALVTFLEQCAAAGAL</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="67" xmlns="http://uniprot.org/uniprot">
    <accession>A9BRQ6</accession>
    <name>A9BRQ6_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="3">D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase</fullName>
            <ecNumber evidence="3">3.4.16.4</ecNumber>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Daci_0977</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="4" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the peptidase S13 family.</text>
    </comment>
    <dbReference type="EC" id="3.4.16.4" evidence="3"/>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX33623.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_0977"/>
    <dbReference type="MEROPS" id="S13.003"/>
    <dbReference type="PRIDE" id="A9BRQ6"/>
    <dbReference type="EnsemblBacteria" id="ABX33623">
        <property type="protein sequence ID" value="ABX33623"/>
        <property type="gene ID" value="Daci_0977"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_0977"/>
    <dbReference type="eggNOG" id="COG2027">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_017692_2_1_4"/>
    <dbReference type="OMA" id="DGTMRKR"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009002">
        <property type="term" value="F:serine-type D-Ala-D-Ala carboxypeptidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006508">
        <property type="term" value="P:proteolysis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.710.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012338">
        <property type="entry name" value="Beta-lactam/transpept-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000667">
        <property type="entry name" value="Peptidase_S13"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30023">
        <property type="entry name" value="PTHR30023"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02113">
        <property type="entry name" value="Peptidase_S13"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00922">
        <property type="entry name" value="DADACBPTASE3"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56601">
        <property type="entry name" value="SSF56601"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00666">
        <property type="entry name" value="PBP4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-0121">Carboxypeptidase</keyword>
    <keyword evidence="3" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="3" id="KW-0645">Protease</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="1"/>
            <end position="26"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="2">
        <location>
            <begin position="1"/>
            <end position="21"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00006096"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ABX33623.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="470" mass="50211" checksum="AFDB431B38BE2434" modified="2008-01-15" version="1">MASAQADAPTSPASLSTKTARESRLPPAVEAALARAKLPRDAVSALVVEVDGRAAPRLDWQSHVAMNPASVMKLVTTYAALDQLGPAHVWRTPVFLGGPVQDGVLRGPLYIQGQGDPKLVMERLWLMLRRLQGMGIKVIVGDIVLDRSAFSVSGHDAATFDNEPWRPYNVAPDALLVNYKAVTVGFTPDAAAGVARLQYDPPLAGIQQQETVPLAPAGSECGDWRARLQLDMTDPLRIAFAGPFPASCGDKSWSLAPAQPEAFAARAIEGMWRELGGKLTGTVHDGRVPAGLQPAFQSESPSLAEVVRDINKYSNNVMAQQVFLTMGMQRTGVASFESSRQALGQWWQARWGAAEQPVADNGAGLSREARITASGLGRLLQQAWASPVMPEFVASMPIVGVDGTLRRSLSRAQGMAHLKTGTLRDASALAGYVDGASGRRYVLVAMANHANAPAARAAWDALVDWTARDR</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="53" xmlns="http://uniprot.org/uniprot">
    <accession>A9BS28</accession>
    <name>A9BS28_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ordered locus">Daci_0792</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="5" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Periplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the UPF0065 (bug) family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX33438.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_0792"/>
    <dbReference type="PRIDE" id="A9BS28"/>
    <dbReference type="EnsemblBacteria" id="ABX33438">
        <property type="protein sequence ID" value="ABX33438"/>
        <property type="gene ID" value="Daci_0792"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_0792"/>
    <dbReference type="eggNOG" id="COG3181">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_045683_0_0_4"/>
    <dbReference type="OMA" id="PTAMPHV"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0042597">
        <property type="term" value="C:periplasmic space"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.190.150">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005064">
        <property type="entry name" value="BUG"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR042100">
        <property type="entry name" value="Bug_dom1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006311">
        <property type="entry name" value="TAT_signal"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR42928">
        <property type="entry name" value="PTHR42928"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03401">
        <property type="entry name" value="TctC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF017082">
        <property type="entry name" value="YflP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51318">
        <property type="entry name" value="TAT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="3">
        <location>
            <begin position="1"/>
            <end position="26"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5002735033" evidence="3">
        <location>
            <begin position="27"/>
            <end position="326"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004418"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00006987"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="ABX33438.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="326" mass="34186" checksum="E23D20CF53E4678A" modified="2008-01-15" version="1">MMNKRNFLHATALAASLLALAASAQAQDFPPKKPVSLVVGFAAGGAADAAARLIAKKLGENIGQSVVVENKGGAGGNIAHQQVANAAADGSVLLFGSVGPLTIAPHLMKLPYDPFKDLAPISGGVNFPNVLVVHKGAGVKTLAEFVAKAKKNPGTVDYASTGAGSASHLAGELFNQRAGIDMVHVPYKGGAPALQDLLGERVTSYFAAPPTALPHIEAGKLIPLATTGLTRPAYMPDIPTVAEAGYPGFEALNWYAFVAPGKTPKPMLDRWNTEIVKVLNDPGVKEALNKHGLTPQPTTRAEFAAFMKKEYEQWGRLVKERKLSAE</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="64" xmlns="http://uniprot.org/uniprot">
    <accession>A9BS71</accession>
    <name>A9BS71_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="3">DNA protecting protein DprA</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Daci_0835</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="4" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the DprA/Smf family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX33481.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012202767.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_0835"/>
    <dbReference type="PRIDE" id="A9BS71"/>
    <dbReference type="EnsemblBacteria" id="ABX33481">
        <property type="protein sequence ID" value="ABX33481"/>
        <property type="gene ID" value="Daci_0835"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_0835"/>
    <dbReference type="eggNOG" id="COG0758">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_029601_1_1_4"/>
    <dbReference type="OMA" id="SEMPFGW"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009294">
        <property type="term" value="P:DNA-mediated transformation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003488">
        <property type="entry name" value="DprA"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041614">
        <property type="entry name" value="DprA_WH"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036390">
        <property type="entry name" value="WH_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43022">
        <property type="entry name" value="PTHR43022"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02481">
        <property type="entry name" value="DNA_processg_A"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF17782">
        <property type="entry name" value="DprA_WH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46785">
        <property type="entry name" value="SSF46785"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00732">
        <property type="entry name" value="dprA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="DprA_WH" evidence="2">
        <location>
            <begin position="338"/>
            <end position="397"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00006525"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF17782"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ABX33481.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="405" mass="42236" checksum="D615E66FA5DEA268" modified="2008-01-15" version="1">MAAALQSTDRLAPEELSAWLRLLLTPGVGRTTARRLLAACGGAQNIWSGPPAAWHGLVTAAQAHSLQTVPQRLEQLVAATVQWLDQPASGQLHAVLALGHPQYPQALLQTEDPPLLLHVQGSERCMTGPGPWFPYPQSLAMVGSRGPTVQGAANARAMAQALAEAGLCIVSGLAQGVDGAAHEGALRAVLRTGAQAAPVTIAVVGTGLDQVYPRRHIGLAREVASHGLIVSEYPLGTGPMAAHFPQRNRIIAGLSQGTLVVEAALQSGSLITARLASEQGREVFAIPGSIHAPQSRGCHALLRQGAKLVETAQDVLDELQGTAVRLPIAKPVPAAAAAAAAVQSAQDHENDATLRALAHDPLSLDELMDRTGMDAAALQAHLLELELEGRVERLPGGLFQRLAQA</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="75" xmlns="http://uniprot.org/uniprot">
    <accession>A9BSF2</accession>
    <name>A9BSF2_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Carbohydrate kinase FGGY</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ordered locus">Daci_1121</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="5" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the FGGY kinase family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX33766.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012203052.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_1121"/>
    <dbReference type="PRIDE" id="A9BSF2"/>
    <dbReference type="EnsemblBacteria" id="ABX33766">
        <property type="protein sequence ID" value="ABX33766"/>
        <property type="gene ID" value="Daci_1121"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_1121"/>
    <dbReference type="eggNOG" id="COG0554">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_009281_2_3_4"/>
    <dbReference type="OMA" id="RSPYLWA"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016301">
        <property type="term" value="F:kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016773">
        <property type="term" value="F:phosphotransferase activity, alcohol group as acceptor"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005975">
        <property type="term" value="P:carbohydrate metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016310">
        <property type="term" value="P:phosphorylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043129">
        <property type="entry name" value="ATPase_NBD"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000577">
        <property type="entry name" value="Carb_kinase_FGGY"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018485">
        <property type="entry name" value="Carb_kinase_FGGY_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018483">
        <property type="entry name" value="Carb_kinase_FGGY_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018484">
        <property type="entry name" value="Carb_kinase_FGGY_N"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02782">
        <property type="entry name" value="FGGY_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00370">
        <property type="entry name" value="FGGY_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF000538">
        <property type="entry name" value="GlpK"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53067">
        <property type="entry name" value="SSF53067"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00445">
        <property type="entry name" value="FGGY_KINASES_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="1 4" id="KW-0418">Kinase</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="FGGY_N" evidence="2">
        <location>
            <begin position="6"/>
            <end position="251"/>
        </location>
    </feature>
    <feature type="domain" description="FGGY_C" evidence="3">
        <location>
            <begin position="260"/>
            <end position="453"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="RuleBase" id="RU003733"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF00370"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF02782"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="ABX33766.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="513" mass="55111" checksum="0DEFBEE64B29539A" modified="2008-01-15" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="51" xmlns="http://uniprot.org/uniprot">
    <accession>A9BT03</accession>
    <name>A9BT03_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="4">DZANK-type domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="5" type="ordered locus">Daci_1720</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="6" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX34363.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_1720"/>
    <dbReference type="PRIDE" id="A9BT03"/>
    <dbReference type="EnsemblBacteria" id="ABX34363">
        <property type="protein sequence ID" value="ABX34363"/>
        <property type="gene ID" value="Daci_1720"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_1720"/>
    <dbReference type="eggNOG" id="COG4260">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_140817_0_0_4"/>
    <dbReference type="OMA" id="GYRNSHH"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025874">
        <property type="entry name" value="DZR"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12773">
        <property type="entry name" value="DZR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0862">Zinc</keyword>
    <keyword evidence="2" id="KW-0863">Zinc-finger</keyword>
    <feature type="domain" description="DZANK-type" evidence="4">
        <location>
            <begin position="46"/>
            <end position="87"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022771"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022833"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="Pfam" id="PF12773"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="ABX34363.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="91" mass="9785" checksum="8DB030D367559FAF" modified="2008-01-15" version="1">MGISKWLFGKIQHNNNGGHHQKNGGHHNQYNQPAQRGSYGEVGYACPTCRTINSATSRFCRQCGLSLVCQGCDATITPGAKFCPQCGRAAS</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-05-25" version="39" xmlns="http://uniprot.org/uniprot">
    <accession>A9BT72</accession>
    <name>A9BT72_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Daci_1997</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="2" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX34637.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012203922.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_1997"/>
    <dbReference type="EnsemblBacteria" id="ABX34637">
        <property type="protein sequence ID" value="ABX34637"/>
        <property type="gene ID" value="Daci_1997"/>
    </dbReference>
    <dbReference type="GeneID" id="60686394"/>
    <dbReference type="KEGG" id="dac:Daci_1997"/>
    <dbReference type="eggNOG" id="ENOG50334YF">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_2011525_0_0_4"/>
    <dbReference type="OMA" id="EMGASHM"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ABX34637.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="122" mass="12569" checksum="132896AB3C14C329" modified="2008-01-15" version="1">MHALRNSVSLARLVMAWFALTLGLAIASPLVHPQAMELVCTAGGSVKLVVVNGEEGQAVSAQHSLDCPLCLAVTPPPAHVSPSWAQPQPLGRALQPIVSARIASLVGAPLPPRGPPLLLLIA</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="53" xmlns="http://uniprot.org/uniprot">
    <accession>A9BTA9</accession>
    <name>A9BTA9_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_2034</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX34674.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012203959.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_2034"/>
    <dbReference type="PRIDE" id="A9BTA9"/>
    <dbReference type="EnsemblBacteria" id="ABX34674">
        <property type="protein sequence ID" value="ABX34674"/>
        <property type="gene ID" value="Daci_2034"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_2034"/>
    <dbReference type="eggNOG" id="ENOG50339MI">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_123717_0_1_4"/>
    <dbReference type="OMA" id="GSQMARI"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR021719">
        <property type="entry name" value="Prot_inh_I78"/>
    </dbReference>
    <dbReference type="Pfam" id="PF11720">
        <property type="entry name" value="Inhibitor_I78"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="1">
        <location>
            <begin position="1"/>
            <end position="25"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5002732499" evidence="1">
        <location>
            <begin position="26"/>
            <end position="116"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX34674.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="116" mass="11835" checksum="D255F4C8456C832F" modified="2008-01-15" version="1">MPMTAPALQRRLAALALLGATTLVAGCAGMSNPFGGSSGGAAQPAPRPVQVCNAASAQSFVGKSNTSATLEAARKQSGAYMARVLREGQPTTMEFNQERLNLVVDGTGRIVAVRCG</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="60" xmlns="http://uniprot.org/uniprot">
    <accession>A9BTI0</accession>
    <name>A9BTI0_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="6">tRNA/rRNA methyltransferase (SpoU)</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ordered locus">Daci_2310</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="7" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX34948.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012204230.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_2310"/>
    <dbReference type="PRIDE" id="A9BTI0"/>
    <dbReference type="EnsemblBacteria" id="ABX34948">
        <property type="protein sequence ID" value="ABX34948"/>
        <property type="gene ID" value="Daci_2310"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_2310"/>
    <dbReference type="eggNOG" id="COG0565">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_056931_0_0_4"/>
    <dbReference type="OMA" id="PIMNLSH"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003723">
        <property type="term" value="F:RNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008173">
        <property type="term" value="F:RNA methyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006396">
        <property type="term" value="P:RNA processing"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.1280.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029028">
        <property type="entry name" value="Alpha/beta_knot_MTases"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004384">
        <property type="entry name" value="RNA_MeTrfase_TrmJ/LasT"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001537">
        <property type="entry name" value="SpoU_MeTrfase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029026">
        <property type="entry name" value="tRNA_m1G_MTases_N"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR42786">
        <property type="entry name" value="PTHR42786"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00588">
        <property type="entry name" value="SpoU_methylase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF004808">
        <property type="entry name" value="LasT"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF75217">
        <property type="entry name" value="SSF75217"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="3 6" id="KW-0489">Methyltransferase</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4 6" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="SpoU_methylase" evidence="5">
        <location>
            <begin position="3"/>
            <end position="188"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00007228"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022490"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022603"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="Pfam" id="PF00588"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="ABX34948.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="275" mass="29527" checksum="B8DCB68C144DAF47" modified="2008-01-15" version="1">MKTRFVLIETSHAGNVGAAARALKTMGFDDLVLVRPRWPNVLRKEETIQRASGALDVLGNARVVETLEEALDGISHLCATAMTPRDFGPPTRTPRQHFELLLSGALDVLAAPDVSDAADEAAPPTDASVSAPAPAPRCNQSGVAFLFGCERFGMSNDDVYRSDVALSIPSNPQFGSLNLGAAIQVVAYEWRQALGGFPVVEHTPAPQRADAAQVAGMLGHWEQALAHIGFLDPAAPKKLMPRLNQLFNRSQLTAEEIHILRGVAKAMLQSTPPKR</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="50" xmlns="http://uniprot.org/uniprot">
    <accession>A9BTW3</accession>
    <name>A9BTW3_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Daci_2739</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="2" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX35377.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_2739"/>
    <dbReference type="PRIDE" id="A9BTW3"/>
    <dbReference type="EnsemblBacteria" id="ABX35377">
        <property type="protein sequence ID" value="ABX35377"/>
        <property type="gene ID" value="Daci_2739"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_2739"/>
    <dbReference type="eggNOG" id="COG2333">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_065110_0_0_4"/>
    <dbReference type="OMA" id="TSRENEM"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.60.15.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036866">
        <property type="entry name" value="RibonucZ/Hydroxyglut_hydro"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56281">
        <property type="entry name" value="SSF56281"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ABX35377.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="371" mass="41269" checksum="61F3C1E0101EFFA7" modified="2008-01-15" version="1">MQSHRHFVGIKQEGCMADYFEIDFLGVETAKSGDAITLRYSVNGTEGVHVVDGGYLDTGDQIVEHLKTYYGTTVIDHVILTHPDRDHANGLRKVLEQCTVRNLWINRPWIYADQLIDRFETYESVEALRRKLRSIYDATAILEDIAVEKGIPIHAPLQGQSIGPFAVMAPTLGRYLDLIVDSAKTPEAVEESAFDSALSSIFRAVKAATAYIKSLWGEEYFPPEPTSRENEMSVVQSAVLNGHRVMLTGDAGREALQEVIDYAPFVGLALPGIRYFQVPHHGGRHNVSTEVLDQLLGPRLNSMPDKHHWNAICSSAKADEDHPRKSVIRAVLHRGGHWAATESQNIRIGAGITRDGWVPIPQAAYPEDQEN</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-05-25" version="62" xmlns="http://uniprot.org/uniprot">
    <accession>A9BU23</accession>
    <name>A9BU23_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Transcriptional regulator, HxlR family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_3100</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX35738.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012204939.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_3100"/>
    <dbReference type="EnsemblBacteria" id="ABX35738">
        <property type="protein sequence ID" value="ABX35738"/>
        <property type="gene ID" value="Daci_3100"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_3100"/>
    <dbReference type="eggNOG" id="COG1733">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_111585_5_0_4"/>
    <dbReference type="OMA" id="MYDWGKD"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006355">
        <property type="term" value="P:regulation of transcription, DNA-templated"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="CDD" id="cd00090">
        <property type="entry name" value="HTH_ARSR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011991">
        <property type="entry name" value="ArsR-like_HTH"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002577">
        <property type="entry name" value="HTH_HxlR"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036390">
        <property type="entry name" value="WH_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01638">
        <property type="entry name" value="HxlR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46785">
        <property type="entry name" value="SSF46785"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51118">
        <property type="entry name" value="HTH_HXLR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HTH hxlR-type" evidence="1">
        <location>
            <begin position="8"/>
            <end position="106"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS51118"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX35738.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="107" mass="12072" checksum="32BB4DAB934D1A9D" modified="2008-01-15" version="1">MKSNISGCSVEEAMRLLGGRWRLLIASYLIDGPRRFNDLRRDMPGISQRSLTLDLRALEEAGLVKRTVYPTAPIKVEYELTPDGERLKPVVEVMKEFGLWVKGKAPA</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="56" xmlns="http://uniprot.org/uniprot">
    <accession>A9BU88</accession>
    <name>A9BU88_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ordered locus">Daci_3165</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="5" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Periplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the UPF0065 (bug) family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX35803.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012205004.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_3165"/>
    <dbReference type="PRIDE" id="A9BU88"/>
    <dbReference type="EnsemblBacteria" id="ABX35803">
        <property type="protein sequence ID" value="ABX35803"/>
        <property type="gene ID" value="Daci_3165"/>
    </dbReference>
    <dbReference type="GeneID" id="60687444"/>
    <dbReference type="KEGG" id="dac:Daci_3165"/>
    <dbReference type="eggNOG" id="COG3181">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_045683_0_0_4"/>
    <dbReference type="OMA" id="GGSTDQF"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0042597">
        <property type="term" value="C:periplasmic space"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.190.150">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005064">
        <property type="entry name" value="BUG"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR042100">
        <property type="entry name" value="Bug_dom1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR42928">
        <property type="entry name" value="PTHR42928"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03401">
        <property type="entry name" value="TctC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF017082">
        <property type="entry name" value="YflP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="3">
        <location>
            <begin position="1"/>
            <end position="22"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5002735809" evidence="3">
        <location>
            <begin position="23"/>
            <end position="325"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004418"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00006987"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="ABX35803.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="325" mass="33883" checksum="3DBDCAE966DF08CC" modified="2008-01-15" version="1">MNKAIALLLAAAATAAAAPGFAQSDYPSKPIKLIAPYAPGGSVDVLARTLATHLSTELKQSVVVENRPGANTMIAASAVARSPADGYTLLLASNASMVLNPLLYKKLSYNPDRELKLTNILAEAPLVLVTNSQTGIKNVADLKAYSKAHAGKLNYSSVGLGNPLQLTTELIKSRLDVAATHIPFNGSAPALTALMANDTQLMVDVAGTSLPHIKAGKLVAIATTGPERSQFLPQTPTIAESGVPGFRASTWFGIAVPAGTPADARNTLQAAVNKVMLNPEFASALGNQTLAARKPQTQAQLDDFLAADGQMWRKVIADNAIALEN</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="69" xmlns="http://uniprot.org/uniprot">
    <accession>A9BU98</accession>
    <name>A9BU98_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="7">Inner-membrane translocator</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ordered locus">Daci_1156</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="8" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX33801.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012203087.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_1156"/>
    <dbReference type="PRIDE" id="A9BU98"/>
    <dbReference type="EnsemblBacteria" id="ABX33801">
        <property type="protein sequence ID" value="ABX33801"/>
        <property type="gene ID" value="Daci_1156"/>
    </dbReference>
    <dbReference type="GeneID" id="60685726"/>
    <dbReference type="KEGG" id="dac:Daci_1156"/>
    <dbReference type="eggNOG" id="COG4177">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_031365_2_1_4"/>
    <dbReference type="OMA" id="MRPCGDF"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015658">
        <property type="term" value="F:branched-chain amino acid transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd06581">
        <property type="entry name" value="TM_PBP1_LivM_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001851">
        <property type="entry name" value="ABC_transp_permease"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043428">
        <property type="entry name" value="LivM-like"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30482">
        <property type="entry name" value="PTHR30482"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02653">
        <property type="entry name" value="BPD_transp_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="5 6" id="KW-0472">Membrane</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 6" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="4 6" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="27"/>
            <end position="44"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="50"/>
            <end position="69"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="76"/>
            <end position="94"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="100"/>
            <end position="123"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="130"/>
            <end position="148"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="181"/>
            <end position="200"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="230"/>
            <end position="250"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="270"/>
            <end position="296"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="308"/>
            <end position="331"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="ABX33801.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="354" mass="38140" checksum="BA5595FC49EE6EB2" modified="2008-01-15" version="1">MFYRENGQFKTTYASDQQIFGVAQDRWAIVALLAVAFLVIPFSVSDYTFQAVLIPFLIMSLAALGLNILVGYCGQISLGTGAFMAVGAYAAYNLQVRFEGMPLLVALIGGGVLAMVFGVIFGLPSLRIRGLYLAVATLAAQFFVDWLASRAAWVTNNSSSGSVSAGPLSIMGWKIDTPMEKYLLCLGILCVLGLAAKNLVRGAIGREWMAMRDMDVAASVIGIRPTYAKLSAFAVSSFIVGVAGALWGFVHLGAWEPAAFSLDRSLQLLFMIIIGGLGSVVGSIFGAAFFVLLPLLLTQVPHWMGLPLSTATATYLEHMIFGALIVFFLIVEPHGLAKLWATARQKLRVWPFPH</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="50" xmlns="http://uniprot.org/uniprot">
    <accession>A9BUA3</accession>
    <name>A9BUA3_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">AbiEi_3_N domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_1161</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX33806.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012203092.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_1161"/>
    <dbReference type="PRIDE" id="A9BUA3"/>
    <dbReference type="EnsemblBacteria" id="ABX33806">
        <property type="protein sequence ID" value="ABX33806"/>
        <property type="gene ID" value="Daci_1161"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_1161"/>
    <dbReference type="eggNOG" id="COG5340">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_077664_2_0_4"/>
    <dbReference type="OMA" id="HARLFDW"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR021561">
        <property type="entry name" value="AbiEi_3"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR033455">
        <property type="entry name" value="AbiEi_3_N"/>
    </dbReference>
    <dbReference type="Pfam" id="PF11459">
        <property type="entry name" value="AbiEi_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF17194">
        <property type="entry name" value="AbiEi_3_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="AbiEi_3_N" evidence="1">
        <location>
            <begin position="6"/>
            <end position="95"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF17194"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX33806.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="245" mass="27160" checksum="22D9514E65E581C6" modified="2008-01-15" version="1">MTTTGASKLNALYTQLPAGTPITSQDLAALGISADLAVHYVRAGWLKRLMRGVFCRPNDSLALHPSLCVLQRRLEGLHVGGKSALDWYGMRQYVAQQPVLQLYGWAAGQLPPWFTERFPAEYHRKRLFDEQPGDLLHVGPFEKRSGAAQVSAPERALLELLSDVGVRQPLQEARELVESAYSLRADVLRELLQRCTSVKTVRLCLQLGREGALPWAARLETASLPKGSDRPWVSRSAEGLLVLKP</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="54" xmlns="http://uniprot.org/uniprot">
    <accession>A9BUG2</accession>
    <name>A9BUG2_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Daci_1221</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="4" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Periplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the UPF0065 (bug) family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX33865.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012203151.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_1221"/>
    <dbReference type="PRIDE" id="A9BUG2"/>
    <dbReference type="EnsemblBacteria" id="ABX33865">
        <property type="protein sequence ID" value="ABX33865"/>
        <property type="gene ID" value="Daci_1221"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_1221"/>
    <dbReference type="eggNOG" id="COG3181">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_045683_0_1_4"/>
    <dbReference type="OMA" id="ESWFGLW"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0042597">
        <property type="term" value="C:periplasmic space"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.190.150">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005064">
        <property type="entry name" value="BUG"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR042100">
        <property type="entry name" value="Bug_dom1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR42928">
        <property type="entry name" value="PTHR42928"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03401">
        <property type="entry name" value="TctC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF017082">
        <property type="entry name" value="YflP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004418"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00006987"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ABX33865.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="315" mass="32796" checksum="DE5937EF98710FCD" modified="2008-01-15" version="1">MDRRVFLAGSLAAAALPLVRASDFPSRPVRVISPYAAGGGPDVQLRQAGPVLGEILGQSIVIENKVGAAGVLAAQYVAQQPADGYTCLMGSNTHLIQKLLQPGLRFDPIGDFTPVSNLASSPTVLVVRADAPWRTARELIAGLKAQPAQSNYGSGGIGTSAHLAGATLASLAGLQVTHIPLKGSVEIAASLIRGDTQYAFPVAGTGIPQVQGGKLRALAVTSRKRLAQLPEVPTLQEVLGSELAVQESWFGLWAPARTPPAVVERLHAAVRQAAAQPALRASFEAVGNEAFADFVRSENRKWAAIIELAGITANS</sequence>
</entry>
<entry dataset="Swiss-Prot" created="2009-03-24" modified="2022-08-03" version="77" xmlns="http://uniprot.org/uniprot">
    <accession>A9BUG5</accession>
    <name>YBEY_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Endoribonuclease YbeY</fullName>
            <ecNumber evidence="1">3.1.-.-</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="1" type="primary">ybeY</name>
        <name type="ordered locus">Daci_1224</name>
    </gene>
    <organism>
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference key="1">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain>DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="1">Single strand-specific metallo-endoribonuclease involved in late-stage 70S ribosome quality control and in maturation of the 3' terminus of the 16S rRNA.</text>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </cofactor>
        <text evidence="1">Binds 1 zinc ion.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="1">Belongs to the endoribonuclease YbeY family.</text>
    </comment>
    <dbReference type="EC" id="3.1.-.-" evidence="1"/>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX33868.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012203154.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A9BUG5"/>
    <dbReference type="SMR" id="A9BUG5"/>
    <dbReference type="STRING" id="398578.Daci_1224"/>
    <dbReference type="PRIDE" id="A9BUG5"/>
    <dbReference type="EnsemblBacteria" id="ABX33868">
        <property type="protein sequence ID" value="ABX33868"/>
        <property type="gene ID" value="Daci_1224"/>
    </dbReference>
    <dbReference type="GeneID" id="60685784"/>
    <dbReference type="KEGG" id="dac:Daci_1224"/>
    <dbReference type="eggNOG" id="COG0319">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_106710_0_1_4"/>
    <dbReference type="OMA" id="FKEWKRR"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004521">
        <property type="term" value="F:endoribonuclease activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004222">
        <property type="term" value="F:metalloendopeptidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008270">
        <property type="term" value="F:zinc ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006364">
        <property type="term" value="P:rRNA processing"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.390.30">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00009">
        <property type="entry name" value="Endoribonucl_YbeY"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023091">
        <property type="entry name" value="MetalPrtase_cat_dom_sf_prd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002036">
        <property type="entry name" value="YbeY"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020549">
        <property type="entry name" value="YbeY_CS"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46986">
        <property type="entry name" value="PTHR46986"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02130">
        <property type="entry name" value="YbeY"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00043">
        <property type="entry name" value="TIGR00043"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01306">
        <property type="entry name" value="UPF0054"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword id="KW-0963">Cytoplasm</keyword>
    <keyword id="KW-0255">Endonuclease</keyword>
    <keyword id="KW-0378">Hydrolase</keyword>
    <keyword id="KW-0479">Metal-binding</keyword>
    <keyword id="KW-0540">Nuclease</keyword>
    <keyword id="KW-1185">Reference proteome</keyword>
    <keyword id="KW-0690">Ribosome biogenesis</keyword>
    <keyword id="KW-0698">rRNA processing</keyword>
    <keyword id="KW-0862">Zinc</keyword>
    <feature type="chain" id="PRO_1000089171" description="Endoribonuclease YbeY">
        <location>
            <begin position="1"/>
            <end position="152"/>
        </location>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <position position="113"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
            <note>catalytic</note>
        </ligand>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <position position="117"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
            <note>catalytic</note>
        </ligand>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <position position="123"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
            <note>catalytic</note>
        </ligand>
    </feature>
    <evidence type="ECO:0000255" key="1">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00009"/>
        </source>
    </evidence>
    <sequence length="152" mass="17513" checksum="443DACFD3AAE14F6" modified="2008-01-15" version="1">MSLNQLQLSLQFARFAEAPVHRAVLSRSKVTRWIRHALAVDAEITVRIVDAEEGQQLNREYRQKDYATNVLTFDYQQEPTAMADLVLCAPVVEREAREQNKTLEEHYAHLLVHGTLHAQGWDHETSEQDAEEMEAYETEIMVELGFADPYAK</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="48" xmlns="http://uniprot.org/uniprot">
    <accession>A9BUH6</accession>
    <name>A9BUH6_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Daci_1235</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="4" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX33879.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012203165.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_1235"/>
    <dbReference type="PRIDE" id="A9BUH6"/>
    <dbReference type="EnsemblBacteria" id="ABX33879">
        <property type="protein sequence ID" value="ABX33879"/>
        <property type="gene ID" value="Daci_1235"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_1235"/>
    <dbReference type="eggNOG" id="ENOG502ZCI4">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_064459_0_0_4"/>
    <dbReference type="OMA" id="SAESTWR"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="2">
        <location>
            <begin position="1"/>
            <end position="22"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5002735108" evidence="2">
        <location>
            <begin position="23"/>
            <end position="379"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="165"/>
            <end position="221"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="184"/>
            <end position="221"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ABX33879.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="379" mass="40244" checksum="01B97EF15F355A82" modified="2008-01-15" version="1">MQVIQKILLCLSMALFAAGAGAQVQQARGKASVSYQDSKVSPQDKERALMAAQLKAVEFYYAEAGQSEAENFDAVRDKILANPDRYILEHTVLSEEDNADRKQYTVSVRVALNVANLRNAVKANSAVARGGPAGRSPLAFMFVSRQVATTKSFDDRVYKRVDETEDVKAQVSASEKGSEGESIRGGRISTNASTATSGTASVKSSRTSETGGSTTRRSAESTWRVIPSANLSQVFSSNFAKAGFKVSEAAMVEPYTGGHFKVAAVENDYKSGMDLQPSTLAAMVAGMRTAQIPYIALGTLDVGMGEPDPQTGLMRVSVTVNAKILDIAQTIPDTIAAVGPVLYAGMGPSEDEARNNALKLAANNAARDLTSQVTNLGLR</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="74" xmlns="http://uniprot.org/uniprot">
    <accession>A9BUN1</accession>
    <name>A9BUN1_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="6 14">Biotin carboxylase</fullName>
            <ecNumber evidence="5 14">6.3.4.14</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="12 14">Acetyl-coenzyme A carboxylase biotin carboxylase subunit A</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="17" type="ordered locus">Daci_1495</name>
    </gene>
    <organism evidence="17 18">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="17 18" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="18">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="18" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="18">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="2 14">This protein is a component of the acetyl coenzyme A carboxylase complex; first, biotin carboxylase catalyzes the carboxylation of the carrier protein and then the transcarboxylase transfers the carboxyl group to form malonyl-CoA.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1 14">
            <text>ATP + hydrogencarbonate + N(6)-biotinyl-L-lysyl-[protein] = ADP + H(+) + N(6)-carboxybiotinyl-L-lysyl-[protein] + phosphate</text>
            <dbReference type="Rhea" id="RHEA:13501"/>
            <dbReference type="Rhea" id="RHEA-COMP:10505"/>
            <dbReference type="Rhea" id="RHEA-COMP:10506"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:17544"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:43474"/>
            <dbReference type="ChEBI" id="CHEBI:83144"/>
            <dbReference type="ChEBI" id="CHEBI:83145"/>
            <dbReference type="ChEBI" id="CHEBI:456216"/>
            <dbReference type="EC" id="6.3.4.14"/>
        </reaction>
    </comment>
    <comment type="pathway">
        <text evidence="3 14">Lipid metabolism; malonyl-CoA biosynthesis; malonyl-CoA from acetyl-CoA: step 1/1.</text>
    </comment>
    <comment type="subunit">
        <text evidence="4 14">Acetyl-CoA carboxylase is a heterohexamer of biotin carboxyl carrier protein, biotin carboxylase and the two subunits of carboxyl transferase in a 2:2 complex.</text>
    </comment>
    <dbReference type="EC" id="6.3.4.14" evidence="5 14"/>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX34139.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012203425.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_1495"/>
    <dbReference type="PRIDE" id="A9BUN1"/>
    <dbReference type="EnsemblBacteria" id="ABX34139">
        <property type="protein sequence ID" value="ABX34139"/>
        <property type="gene ID" value="Daci_1495"/>
    </dbReference>
    <dbReference type="GeneID" id="60686034"/>
    <dbReference type="KEGG" id="dac:Daci_1495"/>
    <dbReference type="eggNOG" id="COG0439">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_000395_3_2_4"/>
    <dbReference type="OMA" id="VWLGHRD"/>
    <dbReference type="UniPathway" id="UPA00655">
        <property type="reaction ID" value="UER00711"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003989">
        <property type="term" value="F:acetyl-CoA carboxylase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004075">
        <property type="term" value="F:biotin carboxylase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006633">
        <property type="term" value="P:fatty acid biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:2001295">
        <property type="term" value="P:malonyl-CoA biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniPathway"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.1490.20">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004549">
        <property type="entry name" value="Acetyl_CoA_COase_biotin_COase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011761">
        <property type="entry name" value="ATP-grasp"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013815">
        <property type="entry name" value="ATP_grasp_subdomain_1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005481">
        <property type="entry name" value="BC-like_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011764">
        <property type="entry name" value="Biotin_carboxylation_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005482">
        <property type="entry name" value="Biotin_COase_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005479">
        <property type="entry name" value="CbamoylP_synth_lsu-like_ATP-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016185">
        <property type="entry name" value="PreATP-grasp_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011054">
        <property type="entry name" value="Rudment_hybrid_motif"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02785">
        <property type="entry name" value="Biotin_carb_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00289">
        <property type="entry name" value="Biotin_carb_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02786">
        <property type="entry name" value="CPSase_L_D2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00878">
        <property type="entry name" value="Biotin_carb_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51246">
        <property type="entry name" value="SSF51246"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52440">
        <property type="entry name" value="SSF52440"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00514">
        <property type="entry name" value="accC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50975">
        <property type="entry name" value="ATP_GRASP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50979">
        <property type="entry name" value="BC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00866">
        <property type="entry name" value="CPSASE_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00867">
        <property type="entry name" value="CPSASE_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="10 13 14" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="11 14" id="KW-0092">Biotin</keyword>
    <keyword evidence="14" id="KW-0275">Fatty acid biosynthesis</keyword>
    <keyword evidence="14" id="KW-0276">Fatty acid metabolism</keyword>
    <keyword evidence="7 14" id="KW-0436">Ligase</keyword>
    <keyword evidence="14" id="KW-0444">Lipid biosynthesis</keyword>
    <keyword evidence="14" id="KW-0443">Lipid metabolism</keyword>
    <keyword evidence="8 13 14" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="9" id="KW-0658">Purine biosynthesis</keyword>
    <keyword evidence="18" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Biotin carboxylation" evidence="16">
        <location>
            <begin position="1"/>
            <end position="447"/>
        </location>
    </feature>
    <feature type="domain" description="ATP-grasp" evidence="15">
        <location>
            <begin position="120"/>
            <end position="317"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00000861"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00003761"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00004956"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00011750"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00013263"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00017242"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022598"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00022755"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="ARBA" id="ARBA00023267"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="12">
        <source>
            <dbReference type="ARBA" id="ARBA00033786"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="13">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00409"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="14">
        <source>
            <dbReference type="RuleBase" id="RU365063"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="15">
        <source>
            <dbReference type="PROSITE" id="PS50975"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="16">
        <source>
            <dbReference type="PROSITE" id="PS50979"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="17">
        <source>
            <dbReference type="EMBL" id="ABX34139.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="18">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="454" mass="50046" checksum="5CDE8C8A47718BC0" modified="2008-01-15" version="1">MFKKILVANRGEIALRIQRACRELGIKAVMVYSEADRDAKYVKLADEAVCIGPAPSPLSYLNMPAIISAAEVTDAEAIHPGYGFLSENADFAERVEKSGFTFIGPTPENIRTMGDKVSAKQAMIKAGVPCVPGSDGELPDDPVQIRRIAKAVGYPVIIKAAGGGGGRGMRVVHTEAALINAVQMTKAEAGAAFGNPAVYMEKFLQNPRHVEIQILADNHRNAVYLGERDCSMQRRHQKVIEEAPAPGIPRRLVEKIGERCAAACKKLGYRGAGTFEFLFENGEFYFIEMNTRVQVEHPVTELITGVDIVRTQIMVAAGEKLPFTQRQINAQLKGHAIECRVNAEDPYNFMPSPGRITMWHAPGGPGVRVDSHVYNNYFVPPNYDSMIGKIIVHGDTREQALARMRTALLETVVEGIKTNIPLHQDLMVDAKFMEGGTNIHYLEEWLAHRNANKR</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="63" xmlns="http://uniprot.org/uniprot">
    <accession>A9BV60</accession>
    <name>A9BV60_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="5">ErfK/YbiS/YcfS/YnhG</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ordered locus">Daci_2084</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="6" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="pathway">
        <text evidence="1">Cell wall biogenesis; peptidoglycan biosynthesis.</text>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the YkuD family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX34724.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012204007.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_2084"/>
    <dbReference type="PRIDE" id="A9BV60"/>
    <dbReference type="EnsemblBacteria" id="ABX34724">
        <property type="protein sequence ID" value="ABX34724"/>
        <property type="gene ID" value="Daci_2084"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_2084"/>
    <dbReference type="eggNOG" id="COG3034">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_041283_0_0_4"/>
    <dbReference type="OMA" id="TPLGVYF"/>
    <dbReference type="UniPathway" id="UPA00219"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0071972">
        <property type="term" value="F:peptidoglycan L,D-transpeptidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016740">
        <property type="term" value="F:transferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009252">
        <property type="term" value="P:peptidoglycan biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniPathway"/>
    </dbReference>
    <dbReference type="CDD" id="cd16913">
        <property type="entry name" value="YkuD_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.440.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005490">
        <property type="entry name" value="LD_TPept_cat_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR032710">
        <property type="entry name" value="NTF2-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038063">
        <property type="entry name" value="Transpep_catalytic_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03734">
        <property type="entry name" value="YkuD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF141523">
        <property type="entry name" value="SSF141523"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54427">
        <property type="entry name" value="SSF54427"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="YkuD" evidence="4">
        <location>
            <begin position="242"/>
            <end position="374"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004752"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00005992"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="Pfam" id="PF03734"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="ABX34724.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="499" mass="52664" checksum="0DA9FB19A3EFCD33" modified="2008-01-15" version="1">MPEKARPLALPPTGLLRLHARAAGVAVLLVALSAVSFSPAAHAKQAKAKASKTAAAKPASGKAGAARLRAASGKPALAAAAVATAGGAAAVAATHAKAAAPVQQSQAEARLLAIIRQVEQRDLDGALKAAGDLTAEVPNFRAAQLVYADLLRFKTGRAGEVLAGTPVAASSAPGHPGQGVLVRHNLSVGSVARLEGPASPTQAQLQDLQNELKRRLQADSGAPPAGSVPGEFLMLGASVRHAIAIDASKSRLYLFAHEAGGLRLVGDFYVSVGKLGTDKWQEGDQRTPLGIYFVGRHIPGPRLPEFYGKGALTVNFPNDWDKAVGRSGSGIWLHGSPPDQFSRAPEASDGCLVLANPDLTLLMQTVDRQTPVLIREKLQWVAPKAQAQQKAADAFVRVVEEWKSAWDGADPRKLAALYAPDLLQSPASRASQERLAAYLNRPGVTLQDLSIYSWKDAKGEIRVVNLRASSKAFAEGLPLRQYWRKTGGRWQLFSEDVMG</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="67" xmlns="http://uniprot.org/uniprot">
    <accession>A9BV67</accession>
    <name>A9BV67_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="7">Major facilitator superfamily MFS_1</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ordered locus">Daci_2091</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="8" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX34731.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012204014.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_2091"/>
    <dbReference type="PRIDE" id="A9BV67"/>
    <dbReference type="EnsemblBacteria" id="ABX34731">
        <property type="protein sequence ID" value="ABX34731"/>
        <property type="gene ID" value="Daci_2091"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_2091"/>
    <dbReference type="eggNOG" id="COG2271">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_001265_46_16_4"/>
    <dbReference type="OMA" id="FRMRMAV"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0022857">
        <property type="term" value="F:transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.1250.20">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011701">
        <property type="entry name" value="MFS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020846">
        <property type="entry name" value="MFS_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036259">
        <property type="entry name" value="MFS_trans_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005829">
        <property type="entry name" value="Sugar_transporter_CS"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07690">
        <property type="entry name" value="MFS_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF103473">
        <property type="entry name" value="SSF103473"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50850">
        <property type="entry name" value="MFS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00216">
        <property type="entry name" value="SUGAR_TRANSPORT_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4 5" id="KW-0472">Membrane</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 5" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="3 5" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="37"/>
            <end position="57"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="77"/>
            <end position="96"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="105"/>
            <end position="126"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="132"/>
            <end position="149"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="177"/>
            <end position="201"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="213"/>
            <end position="236"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="291"/>
            <end position="310"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="330"/>
            <end position="348"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="360"/>
            <end position="378"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="390"/>
            <end position="409"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="421"/>
            <end position="442"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="454"/>
            <end position="472"/>
        </location>
    </feature>
    <feature type="domain" description="MFS" evidence="6">
        <location>
            <begin position="38"/>
            <end position="476"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="PROSITE" id="PS50850"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="ABX34731.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="481" mass="51056" checksum="FD8D050970C9EF1D" modified="2008-01-15" version="1">MNTSAIASDAPGAGHPAPAGIDAPWTAPTVTRRQVSYATWVCFFAWVFAVYDFILFGTLLPQLGEHFQWSAEQQARLNTWVTLGTVIVAFAIGPIADRLGRRKGIIIAVAGAALCSGLTALAGWVIGLSAGLGFVLLIVVRSLAGLGYAEQSINATYLSELFSLVYTDPASLRRRGFIYSLVQGGWPVGAVLTAVLVALLYPLGERWFGQGGGWALSFVFAMFPALVIAVLGRRLVETPQFLTARRVADLRRAGREAEAMRLAQEHGASPQQEQHTGLSAMFRGASLRPTLSLALGFFLNWFAIVIFAVLGTSVLGGAGGTPGKGVDFSSALQVLIISNLAGFLGYVFHGWLGDRIGRRNAVAIGWMLGGLAFALMLNAPSGDFWRIVPLYSLGLFFLIGPYAAALFLIGESFPSHIRATASSFVNAMGQVGAIAAGFGVTWTLSQGADWVQAALYWGAIPCAASGLLMFLAPHVDPETVK</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="64" xmlns="http://uniprot.org/uniprot">
    <accession>A9BVD4</accession>
    <name>A9BVD4_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="7">Histone family protein nucleoid-structuring protein H-NS</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ordered locus">Daci_2158</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="8" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Cytoplasm</location>
            <location evidence="1">Nucleoid</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the histone-like protein H-NS family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX34798.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012204081.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_2158"/>
    <dbReference type="PRIDE" id="A9BVD4"/>
    <dbReference type="EnsemblBacteria" id="ABX34798">
        <property type="protein sequence ID" value="ABX34798"/>
        <property type="gene ID" value="Daci_2158"/>
    </dbReference>
    <dbReference type="GeneID" id="60686553"/>
    <dbReference type="KEGG" id="dac:Daci_2158"/>
    <dbReference type="eggNOG" id="COG2916">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_117503_5_1_4"/>
    <dbReference type="OMA" id="ITTWFSI"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009295">
        <property type="term" value="C:nucleoid"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030527">
        <property type="term" value="F:structural constituent of chromatin"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006355">
        <property type="term" value="P:regulation of transcription, DNA-templated"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027444">
        <property type="entry name" value="H-NS_C_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001801">
        <property type="entry name" value="Histone_HNS"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00816">
        <property type="entry name" value="Histone_HNS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00528">
        <property type="entry name" value="HNS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="4" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HNS" evidence="6">
        <location>
            <begin position="57"/>
            <end position="96"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="5">
        <location>
            <begin position="59"/>
            <end position="96"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004453"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00010610"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022490"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="SMART" id="SM00528"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="ABX34798.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="96" mass="10830" checksum="A511DF92C7EF27F7" modified="2008-01-15" version="1">MSSYKELLKQRQELEQQIQEARKRELADAVGQVRNLIAEYGLTADDVFPAARGRTAGTTGAKVAPKYRDPATGQTWTGRGKPPKWIQNQDREKFVI</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="53" xmlns="http://uniprot.org/uniprot">
    <accession>A9BW48</accession>
    <name>A9BW48_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Daci_3226</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="2" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX35864.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012205064.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_3226"/>
    <dbReference type="PRIDE" id="A9BW48"/>
    <dbReference type="EnsemblBacteria" id="ABX35864">
        <property type="protein sequence ID" value="ABX35864"/>
        <property type="gene ID" value="Daci_3226"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_3226"/>
    <dbReference type="HOGENOM" id="CLU_127009_1_0_4"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.3790.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036619">
        <property type="entry name" value="NinB_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008711">
        <property type="entry name" value="Recombinase_NinB"/>
    </dbReference>
    <dbReference type="Pfam" id="PF05772">
        <property type="entry name" value="NinB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF103370">
        <property type="entry name" value="SSF103370"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ABX35864.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="132" mass="14993" checksum="83BB119DE31464EC" modified="2008-01-15" version="1">MTDRLTLSLWEESQAHKAINHLWKNARVAVRQGRRMVAELRPEKRSDAQNAMLHALLTEIAKTREWAGAKRDVETWKRLLTAAWLRARGESVEVLPALDGCGIDVVFRRTSSLTRAECGELVDFIEAWRAGA</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="45" xmlns="http://uniprot.org/uniprot">
    <accession>A9BW79</accession>
    <name>A9BW79_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Daci_3257</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="2" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX35895.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012205095.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_3257"/>
    <dbReference type="PRIDE" id="A9BW79"/>
    <dbReference type="EnsemblBacteria" id="ABX35895">
        <property type="protein sequence ID" value="ABX35895"/>
        <property type="gene ID" value="Daci_3257"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_3257"/>
    <dbReference type="eggNOG" id="ENOG503167H">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_815647_0_0_4"/>
    <dbReference type="OMA" id="DWATEEV"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ABX35895.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="338" mass="33243" checksum="0679278713DC1594" modified="2008-01-15" version="1">MTDIVTPTPIDALPPAPSPGDTAAEFNAKSFPFVAAEVLMVPQINTAATQTNQNAVAADERAVAADASKSAAQAAAATATTKAGEAVGSATAAAGSATAASTSAGNAAGSATAASGSASAAAGSATAASGSATAANTAKTGAEAARDAAEDFRDQAEVFATQQLKGSSTTSVTPGAGAKSFTIEASRSFVTGMYVVATSTSDPATQMSGPVQSYDPATGALVIAVDTFSGASAKSDWVIGVAAKGSSGMAQQVITGNTTAVPGVIYVIAAANVTLTLPTTGLSSDSKIGIRLAAAVSRNQVIDFLTVNFRGQTPGQRFIDKKGFGLDIKYNATRGEWV</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="57" xmlns="http://uniprot.org/uniprot">
    <accession>A9BWB2</accession>
    <name>A9BWB2_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="3">AFG1-family ATPase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Daci_3496</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="4" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX36132.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012205332.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_3496"/>
    <dbReference type="PRIDE" id="A9BWB2"/>
    <dbReference type="EnsemblBacteria" id="ABX36132">
        <property type="protein sequence ID" value="ABX36132"/>
        <property type="gene ID" value="Daci_3496"/>
    </dbReference>
    <dbReference type="GeneID" id="60687722"/>
    <dbReference type="KEGG" id="dac:Daci_3496"/>
    <dbReference type="eggNOG" id="COG1485">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_008681_0_4_4"/>
    <dbReference type="OMA" id="QKREYWE"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016887">
        <property type="term" value="F:ATP hydrolysis activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005654">
        <property type="entry name" value="ATPase_AFG1-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR12169">
        <property type="entry name" value="PTHR12169"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03969">
        <property type="entry name" value="AFG1_ATPase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="1" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ABX36132.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="367" mass="42074" checksum="E313CEA4DC93ED88" modified="2008-01-15" version="1">MSVSVREAYEAELVAKGFHSDPAQLRAVEALQRCADDWAVYRQRRSNAFKKLINHPEIPRGVYMYGGVGRGKSFLMDCFFNAVPLRRKVRLHFHEFMREVHRELAVLQGTQNPLDVLGARISKKYKLICFDEFHVADITDAMILHRLLVSLFANGVGFVTTSNFKPDELYPGGLHRDRILPAIDLLNERMEVVNVDNGTDYRRRTLENARLYHTPLGAEADAAMTETFDKLAEVKDEDPVLHIEAREIRARRRAGGVVWFDFRELCGGPRSQNDYLEIASQFHTVLLSDVPYMPVNMASPARRFTWLVDVLYDRRVKLVISAAVPPEQLYTEGPLAHEFPRTVSRLNEMQSKEFLALERRVVDTSLT</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="71" xmlns="http://uniprot.org/uniprot">
    <accession>A9BWB5</accession>
    <name>A9BWB5_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="6">Helicase c2</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ordered locus">Daci_3499</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="7" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX36135.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012205335.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_3499"/>
    <dbReference type="PRIDE" id="A9BWB5"/>
    <dbReference type="EnsemblBacteria" id="ABX36135">
        <property type="protein sequence ID" value="ABX36135"/>
        <property type="gene ID" value="Daci_3499"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_3499"/>
    <dbReference type="eggNOG" id="COG1199">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_012117_2_0_4"/>
    <dbReference type="OMA" id="KIIVVNH"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004386">
        <property type="term" value="F:helicase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016818">
        <property type="term" value="F:hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003676">
        <property type="term" value="F:nucleic acid binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006139">
        <property type="term" value="P:nucleobase-containing compound metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006555">
        <property type="entry name" value="ATP-dep_Helicase_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045028">
        <property type="entry name" value="DinG/Rad3-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014013">
        <property type="entry name" value="Helic_SF1/SF2_ATP-bd_DinG/Rad3"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014001">
        <property type="entry name" value="Helicase_ATP-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11472">
        <property type="entry name" value="PTHR11472"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13307">
        <property type="entry name" value="Helicase_C_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00487">
        <property type="entry name" value="DEXDc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00491">
        <property type="entry name" value="HELICc2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51193">
        <property type="entry name" value="HELICASE_ATP_BIND_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="6" id="KW-0347">Helicase</keyword>
    <keyword evidence="2" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="1" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Helicase ATP-binding" evidence="5">
        <location>
            <begin position="17"/>
            <end position="294"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="4">
        <location>
            <begin position="404"/>
            <end position="445"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Acidic residues" evidence="4">
        <location>
            <begin position="409"/>
            <end position="423"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="PROSITE" id="PS51193"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="ABX36135.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="724" mass="78550" checksum="2C758D183C8CD116" modified="2008-01-15" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="90" xmlns="http://uniprot.org/uniprot">
    <accession>A9BWF5</accession>
    <name>A9BWF5_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="8">Probable cytosol aminopeptidase</fullName>
            <ecNumber evidence="8">3.4.11.1</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="8">Leucine aminopeptidase</fullName>
            <shortName evidence="8">LAP</shortName>
            <ecNumber evidence="8">3.4.11.10</ecNumber>
        </alternativeName>
        <alternativeName>
            <fullName evidence="8">Leucyl aminopeptidase</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="8" type="primary">pepA</name>
        <name evidence="11" type="ordered locus">Daci_3539</name>
    </gene>
    <organism evidence="11 12">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="11 12" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="12">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="12" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="12">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="8">Presumably involved in the processing and regular turnover of intracellular proteins. Catalyzes the removal of unsubstituted N-terminal amino acids from various peptides.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1 8">
            <text>Release of an N-terminal amino acid, Xaa-|-Yaa-, in which Xaa is preferably Leu, but may be other amino acids including Pro although not Arg or Lys, and Yaa may be Pro. Amino acid amides and methyl esters are also readily hydrolyzed, but rates on arylamides are exceedingly low.</text>
            <dbReference type="EC" id="3.4.11.1"/>
        </reaction>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="2 8">
            <text>Release of an N-terminal amino acid, preferentially leucine, but not glutamic or aspartic acids.</text>
            <dbReference type="EC" id="3.4.11.10"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="8">
            <name>Mn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29035"/>
        </cofactor>
        <text evidence="8">Binds 2 manganese ions per subunit.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="8">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="3 8">Belongs to the peptidase M17 family.</text>
    </comment>
    <dbReference type="EC" id="3.4.11.1" evidence="8"/>
    <dbReference type="EC" id="3.4.11.10" evidence="8"/>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX36175.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012205375.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_3539"/>
    <dbReference type="PRIDE" id="A9BWF5"/>
    <dbReference type="EnsemblBacteria" id="ABX36175">
        <property type="protein sequence ID" value="ABX36175"/>
        <property type="gene ID" value="Daci_3539"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_3539"/>
    <dbReference type="eggNOG" id="COG0260">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_013734_0_1_4"/>
    <dbReference type="OMA" id="MKNTGPR"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030145">
        <property type="term" value="F:manganese ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0070006">
        <property type="term" value="F:metalloaminopeptidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006508">
        <property type="term" value="P:proteolysis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd00433">
        <property type="entry name" value="Peptidase_M17"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.220.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00181">
        <property type="entry name" value="Cytosol_peptidase_M17"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011356">
        <property type="entry name" value="Leucine_aapep/pepB"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043472">
        <property type="entry name" value="Macro_dom-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000819">
        <property type="entry name" value="Peptidase_M17_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023042">
        <property type="entry name" value="Peptidase_M17_leu_NH2_pept"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008283">
        <property type="entry name" value="Peptidase_M17_N"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11963">
        <property type="entry name" value="PTHR11963"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00883">
        <property type="entry name" value="Peptidase_M17"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02789">
        <property type="entry name" value="Peptidase_M17_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00481">
        <property type="entry name" value="LAMNOPPTDASE"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52949">
        <property type="entry name" value="SSF52949"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00631">
        <property type="entry name" value="CYTOSOL_AP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4 8 11" id="KW-0031">Aminopeptidase</keyword>
    <keyword evidence="8" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="6 8 11" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="7 8" id="KW-0464">Manganese</keyword>
    <keyword evidence="8" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="5 8" id="KW-0645">Protease</keyword>
    <keyword evidence="12" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="CYTOSOL_AP" evidence="10">
        <location>
            <begin position="335"/>
            <end position="342"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="9">
        <location>
            <begin position="493"/>
            <end position="525"/>
        </location>
    </feature>
    <feature type="active site" evidence="8">
        <location>
            <position position="267"/>
        </location>
    </feature>
    <feature type="active site" evidence="8">
        <location>
            <position position="341"/>
        </location>
    </feature>
    <feature type="binding site" evidence="8">
        <location>
            <position position="255"/>
        </location>
        <ligand>
            <name>Mn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29035"/>
            <label>2</label>
        </ligand>
    </feature>
    <feature type="binding site" evidence="8">
        <location>
            <position position="260"/>
        </location>
    </feature>
    <feature type="binding site" evidence="8">
        <location>
            <position position="278"/>
        </location>
        <ligand>
            <name>Mn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29035"/>
            <label>2</label>
        </ligand>
    </feature>
    <feature type="binding site" evidence="8">
        <location>
            <position position="337"/>
        </location>
        <ligand>
            <name>Mn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29035"/>
            <label>1</label>
        </ligand>
    </feature>
    <feature type="binding site" evidence="8">
        <location>
            <position position="339"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00000135"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00000967"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00009528"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022438"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022670"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023211"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00181"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="10">
        <source>
            <dbReference type="PROSITE" id="PS00631"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="EMBL" id="ABX36175.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="525" mass="53197" checksum="4EC53EAA27AEB1AD" modified="2008-01-15" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="66" xmlns="http://uniprot.org/uniprot">
    <accession>A9BWI0</accession>
    <name>A9BWI0_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="9">Asparaginase</fullName>
            <ecNumber evidence="9">3.5.1.1</ecNumber>
        </submittedName>
    </protein>
    <gene>
        <name evidence="9" type="ordered locus">Daci_3566</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="9 10" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="10" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the asparaginase 1 family.</text>
    </comment>
    <dbReference type="EC" id="3.5.1.1" evidence="9"/>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX36200.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_3566"/>
    <dbReference type="PRIDE" id="A9BWI0"/>
    <dbReference type="EnsemblBacteria" id="ABX36200">
        <property type="protein sequence ID" value="ABX36200"/>
        <property type="gene ID" value="Daci_3566"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_3566"/>
    <dbReference type="eggNOG" id="COG0252">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_019134_1_2_4"/>
    <dbReference type="OMA" id="LTCAMRP"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004067">
        <property type="term" value="F:asparaginase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006528">
        <property type="term" value="P:asparagine metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd08964">
        <property type="entry name" value="L-asparaginase_II"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.1170">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.40">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004550">
        <property type="entry name" value="AsnASE_II"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036152">
        <property type="entry name" value="Asp/glu_Ase-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006034">
        <property type="entry name" value="Asparaginase/glutaminase-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027475">
        <property type="entry name" value="Asparaginase/glutaminase_AS2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR040919">
        <property type="entry name" value="Asparaginase_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027473">
        <property type="entry name" value="L-asparaginase_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027474">
        <property type="entry name" value="L-asparaginase_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037152">
        <property type="entry name" value="L-asparaginase_N_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00710">
        <property type="entry name" value="Asparaginase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF17763">
        <property type="entry name" value="Asparaginase_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF001220">
        <property type="entry name" value="L-ASNase_gatD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00139">
        <property type="entry name" value="ASNGLNASE"/>
    </dbReference>
    <dbReference type="SMART" id="SM00870">
        <property type="entry name" value="Asparaginase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53774">
        <property type="entry name" value="SSF53774"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00917">
        <property type="entry name" value="ASN_GLN_ASE_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51732">
        <property type="entry name" value="ASN_GLN_ASE_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2 9" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Asparaginase" evidence="7">
        <location>
            <begin position="2"/>
            <end position="189"/>
        </location>
    </feature>
    <feature type="domain" description="Asparaginase_C" evidence="8">
        <location>
            <begin position="218"/>
            <end position="314"/>
        </location>
    </feature>
    <feature type="region of interest" description="Substrate binding" evidence="4">
        <location>
            <begin position="91"/>
            <end position="92"/>
        </location>
    </feature>
    <feature type="active site" description="Acyl-ester intermediate" evidence="5">
        <location>
            <position position="9"/>
        </location>
    </feature>
    <feature type="active site" description="O-isoaspartyl threonine intermediate" evidence="3">
        <location>
            <position position="9"/>
        </location>
    </feature>
    <feature type="active site" evidence="6">
        <location>
            <position position="91"/>
        </location>
    </feature>
    <feature type="binding site" evidence="4">
        <location>
            <position position="58"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00010518"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="PIRSR" id="PIRSR001220-1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="PIRSR" id="PIRSR001220-2"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="PIRSR" id="PIRSR604550-50"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU10100"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="Pfam" id="PF00710"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="Pfam" id="PF17763"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="ABX36200.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="318" mass="33147" checksum="48C78AD7D63BD643" modified="2008-01-15" version="1">MVILGTGGTIAGRADSQSQGVGYKAGQITVQSLLEAVPDLEQQALGPVQTQQIAQVDSKDMDWPVWRALLRACTQALEDADTRAVVITHGTDTLEETAWLLHSLLPATKPIVLTCAMRPATALLADGPQNLRDAVTVAASGGRSGVWVVAGGEVHAAAQVQKVHPYRLQAMRSVEGGPQALVEEGRVRWLVPAAPSARAMVPAAMSSGLLALDELPWVEVVFSGALARASGVDALVAAGVRGIVVAGTGNATVHEGMEAALQRARDKGVWIWRGTRCAEGLPVASGLGTNPAEADLAHLPVAKARIAMMLELAAQPRD</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="82" xmlns="http://uniprot.org/uniprot">
    <accession>A9BWL7</accession>
    <name>A9BWL7_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="10">YidE/YbjL duplication domain-containing protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="10" type="ordered locus">Daci_3913</name>
    </gene>
    <organism evidence="10 11">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="10 11" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="11">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="11" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="11">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="2">Cell membrane</location>
            <topology evidence="2">Multi-pass membrane protein</topology>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="3">Belongs to the AAE transporter (TC 2.A.81) family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX36544.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012205738.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="PRIDE" id="A9BWL7"/>
    <dbReference type="EnsemblBacteria" id="ABX36544">
        <property type="protein sequence ID" value="ABX36544"/>
        <property type="gene ID" value="Daci_3913"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_3913"/>
    <dbReference type="eggNOG" id="COG2985">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_035023_2_2_4"/>
    <dbReference type="OMA" id="AMWLIRL"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0022857">
        <property type="term" value="F:transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006813">
        <property type="term" value="P:potassium ion transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR022457">
        <property type="entry name" value="Asp_Ala_antiprt"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036721">
        <property type="entry name" value="RCK_C_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006512">
        <property type="entry name" value="YidE_YbjL"/>
    </dbReference>
    <dbReference type="Pfam" id="PF06826">
        <property type="entry name" value="Asp-Al_Ex"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF116726">
        <property type="entry name" value="SSF116726"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR03802">
        <property type="entry name" value="Asp_Ala_antiprt"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01625">
        <property type="entry name" value="YidE_YbjL_dupl"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="7 8" id="KW-0472">Membrane</keyword>
    <keyword evidence="11" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="5 8" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="6 8" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="33"/>
            <end position="53"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="60"/>
            <end position="82"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="88"/>
            <end position="107"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="119"/>
            <end position="139"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="188"/>
            <end position="210"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="414"/>
            <end position="432"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="439"/>
            <end position="457"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="504"/>
            <end position="524"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="568"/>
            <end position="588"/>
        </location>
    </feature>
    <feature type="domain" description="Asp-Al_Ex" evidence="9">
        <location>
            <begin position="41"/>
            <end position="204"/>
        </location>
    </feature>
    <feature type="domain" description="Asp-Al_Ex" evidence="9">
        <location>
            <begin position="419"/>
            <end position="585"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00004651"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00009854"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="9">
        <source>
            <dbReference type="Pfam" id="PF06826"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="EMBL" id="ABX36544.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="589" mass="61343" checksum="7B8EBBAA74980269" modified="2008-01-15" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="60" xmlns="http://uniprot.org/uniprot">
    <accession>A9BWS0</accession>
    <name>A9BWS0_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Opacity protein and related surface antigens-like protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Daci_3966</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="4" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX36597.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_3966"/>
    <dbReference type="PRIDE" id="A9BWS0"/>
    <dbReference type="EnsemblBacteria" id="ABX36597">
        <property type="protein sequence ID" value="ABX36597"/>
        <property type="gene ID" value="Daci_3966"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_3966"/>
    <dbReference type="eggNOG" id="COG3637">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_057473_2_0_4"/>
    <dbReference type="OMA" id="YGAVRIN"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009279">
        <property type="term" value="C:cell outer membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011250">
        <property type="entry name" value="OMP/PagP_b-brl"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027385">
        <property type="entry name" value="OMP_b-brl"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13505">
        <property type="entry name" value="OMP_b-brl"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56925">
        <property type="entry name" value="SSF56925"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0998">Cell outer membrane</keyword>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="OMP_b-brl" evidence="2">
        <location>
            <begin position="53"/>
            <end position="268"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023237"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF13505"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ABX36597.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="268" mass="29529" checksum="0DF165532AFA359F" modified="2008-01-15" version="1">MVTCLLSGGGLPLHRVVLRSCVRSRPNRRGQGVFLQWRHSPKRDCMKHVLTFTALILTASGSALAADNFYGAVRINSANYKAHDMDSSARPGLGQFVPGDDSRRATGGSLALGYQLPSDWRLEAEYTLPRSNEFTSGSTRFPTSFNHHSIRSQRLMINAYKDFPLNAQFSVYGTAGLGLAHLQSSGWQGNPNRQYFSDSQNNLAYALGFGVSYSPIQKVSIDLGYRYVGMGKTHSGANNFTNVRGLQDEQMRAKLSSSEISVGLRYSF</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="48" xmlns="http://uniprot.org/uniprot">
    <accession>A9BWU5</accession>
    <name>A9BWU5_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ordered locus">Daci_3991</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="5" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX36622.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012205816.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_3991"/>
    <dbReference type="PRIDE" id="A9BWU5"/>
    <dbReference type="EnsemblBacteria" id="ABX36622">
        <property type="protein sequence ID" value="ABX36622"/>
        <property type="gene ID" value="Daci_3991"/>
    </dbReference>
    <dbReference type="GeneID" id="60688314"/>
    <dbReference type="KEGG" id="dac:Daci_3991"/>
    <dbReference type="eggNOG" id="COG4575">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_132623_0_2_4"/>
    <dbReference type="OMA" id="PWRVATA"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043605">
        <property type="entry name" value="DUF883_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043604">
        <property type="entry name" value="DUF883_N"/>
    </dbReference>
    <dbReference type="Pfam" id="PF05957">
        <property type="entry name" value="DUF883"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF19029">
        <property type="entry name" value="DUF883_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="83"/>
            <end position="101"/>
        </location>
    </feature>
    <feature type="domain" description="DUF883" evidence="2">
        <location>
            <begin position="12"/>
            <end position="61"/>
        </location>
    </feature>
    <feature type="domain" description="DUF883_C" evidence="3">
        <location>
            <begin position="74"/>
            <end position="103"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF05957"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF19029"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="ABX36622.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="103" mass="11136" checksum="B5E6A671769D5B77" modified="2008-01-15" version="1">MTKSITDTVSTAQADLEKLVGDLRGLLSAKELDAVPEIHMLRQRIDDGMSNVRESAVRAAQEAARQAKDAAYAADRYAHDEPWRVAGAALAMGALLGFLLGRR</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2021-09-29" version="53" xmlns="http://uniprot.org/uniprot">
    <accession>A9BWW0</accession>
    <name>A9BWW0_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Cupin 2 conserved barrel domain protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_4314</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX36945.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012206117.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_4314"/>
    <dbReference type="EnsemblBacteria" id="ABX36945">
        <property type="protein sequence ID" value="ABX36945"/>
        <property type="gene ID" value="Daci_4314"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_4314"/>
    <dbReference type="eggNOG" id="COG0662">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_131430_1_0_4"/>
    <dbReference type="OMA" id="PKGVEHC"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.120.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013096">
        <property type="entry name" value="Cupin_2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014710">
        <property type="entry name" value="RmlC-like_jellyroll"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011051">
        <property type="entry name" value="RmlC_Cupin_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07883">
        <property type="entry name" value="Cupin_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51182">
        <property type="entry name" value="SSF51182"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Cupin_2" evidence="1">
        <location>
            <begin position="45"/>
            <end position="104"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF07883"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX36945.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="128" mass="14762" checksum="615C701C719EC257" modified="2008-01-15" version="1">MTFPVGNRPYEAINFPEKFSRFTGQWSPRVVAEMNDYQFKIVRVQGEFIWHSHAETDEAFLVLDGELRIDFRDGHALLRQGELYVVPKGTEHKPSAEREARLMLIEPRGVLNTGEEGGERTAPNDMWV</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="93" xmlns="http://uniprot.org/uniprot">
    <accession>A9BX91</accession>
    <name>A9BX91_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="9">Polar amino acid ABC transporter, inner membrane subunit</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="9" type="ordered locus">Daci_5538</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="9 10" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="10" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="7">Cell membrane</location>
            <topology evidence="7">Multi-pass membrane protein</topology>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the binding-protein-dependent transport system permease family. HisMQ subfamily.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX38167.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012207336.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_5538"/>
    <dbReference type="PRIDE" id="A9BX91"/>
    <dbReference type="EnsemblBacteria" id="ABX38167">
        <property type="protein sequence ID" value="ABX38167"/>
        <property type="gene ID" value="Daci_5538"/>
    </dbReference>
    <dbReference type="GeneID" id="60689891"/>
    <dbReference type="KEGG" id="dac:Daci_5538"/>
    <dbReference type="eggNOG" id="COG0765">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_019602_1_1_4"/>
    <dbReference type="OMA" id="VAVIWYL"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043190">
        <property type="term" value="C:ATP-binding cassette (ABC) transporter complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0022857">
        <property type="term" value="F:transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006865">
        <property type="term" value="P:amino acid transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd06261">
        <property type="entry name" value="TM_PBP2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.3720.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010065">
        <property type="entry name" value="AA_ABC_transptr_permease_3TM"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043429">
        <property type="entry name" value="ArtM/GltK/GlnP/TcyL/YhdX-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000515">
        <property type="entry name" value="MetI-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035906">
        <property type="entry name" value="MetI-like_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30614">
        <property type="entry name" value="PTHR30614"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00528">
        <property type="entry name" value="BPD_transp_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF161098">
        <property type="entry name" value="SSF161098"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01726">
        <property type="entry name" value="HEQRo_perm_3TM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50928">
        <property type="entry name" value="ABC_TM1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-0029">Amino-acid transport</keyword>
    <keyword evidence="6 7" id="KW-0472">Membrane</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 7" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="5 7" id="KW-1133">Transmembrane helix</keyword>
    <keyword evidence="7" id="KW-0813">Transport</keyword>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="12"/>
            <end position="39"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="60"/>
            <end position="81"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="87"/>
            <end position="106"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="182"/>
            <end position="205"/>
        </location>
    </feature>
    <feature type="domain" description="ABC transmembrane type-1" evidence="8">
        <location>
            <begin position="15"/>
            <end position="205"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00010072"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022970"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="RuleBase" id="RU363032"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="PROSITE" id="PS50928"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="ABX38167.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="217" mass="24260" checksum="03936B1F61D66151" modified="2008-01-15" version="1">MEYVISLMGPLSAGALVTLKLFVITLALSIPLGLSLALMRISRFPALSRLVGGYIWLMRGTPLMLQMLFIYFALPFVPVIGVRLPDFPAAVVAFALNYAAYFAEIFRAGIQSVDRGQYEGAKVLGMSYGQTMRRIILPQMWARIIPPVSNETITLVKDTSLIYVLALNDLLRAARGIVQRDFTITPFVVAAGFYLVMTLVLTWIFQYLEKRHAKYDA</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="62" xmlns="http://uniprot.org/uniprot">
    <accession>A9BXI5</accession>
    <name>A9BXI5_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="3">5-oxoprolinase (ATP-hydrolyzing)</fullName>
            <ecNumber evidence="3">3.5.2.9</ecNumber>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Daci_5632</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="4" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EC" id="3.5.2.9" evidence="3"/>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX38261.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012207430.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_5632"/>
    <dbReference type="PRIDE" id="A9BXI5"/>
    <dbReference type="EnsemblBacteria" id="ABX38261">
        <property type="protein sequence ID" value="ABX38261"/>
        <property type="gene ID" value="Daci_5632"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_5632"/>
    <dbReference type="eggNOG" id="COG0145">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_002157_1_2_4"/>
    <dbReference type="OMA" id="CYNRGGT"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0017168">
        <property type="term" value="F:5-oxoprolinase (ATP-hydrolyzing) activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043129">
        <property type="entry name" value="ATPase_NBD"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008040">
        <property type="entry name" value="Hydant_A_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002821">
        <property type="entry name" value="Hydantoinase_A"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045079">
        <property type="entry name" value="Oxoprolinase_fam"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11365">
        <property type="entry name" value="PTHR11365"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF05378">
        <property type="entry name" value="Hydant_A_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01968">
        <property type="entry name" value="Hydantoinase_A"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53067">
        <property type="entry name" value="SSF53067"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Hydant_A_N" evidence="2">
        <location>
            <begin position="14"/>
            <end position="188"/>
        </location>
    </feature>
    <feature type="domain" description="Hydantoinase_A" evidence="1">
        <location>
            <begin position="209"/>
            <end position="500"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF01968"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF05378"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ABX38261.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="698" mass="75387" checksum="8AA75C5069F3396A" modified="2008-01-15" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2021-06-02" version="79" xmlns="http://uniprot.org/uniprot">
    <accession>A9BXI7</accession>
    <name>A9BXI7_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Transcriptional regulator, LysR family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ordered locus">Daci_5634</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="5" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the LysR transcriptional regulatory family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX38263.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012207432.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_5634"/>
    <dbReference type="EnsemblBacteria" id="ABX38263">
        <property type="protein sequence ID" value="ABX38263"/>
        <property type="gene ID" value="Daci_5634"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_5634"/>
    <dbReference type="eggNOG" id="COG0583">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_039613_6_5_4"/>
    <dbReference type="OMA" id="HPGIRLN"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003700">
        <property type="term" value="F:DNA-binding transcription factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005119">
        <property type="entry name" value="LysR_subst-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000847">
        <property type="entry name" value="Tscrpt_reg_HTH_LysR"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036390">
        <property type="entry name" value="WH_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00126">
        <property type="entry name" value="HTH_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03466">
        <property type="entry name" value="LysR_substrate"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46785">
        <property type="entry name" value="SSF46785"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50931">
        <property type="entry name" value="HTH_LYSR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HTH lysR-type" evidence="3">
        <location>
            <begin position="1"/>
            <end position="58"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="301"/>
            <end position="325"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00009437"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="PROSITE" id="PS50931"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="ABX38263.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="325" mass="35174" checksum="9969DA3E4427ED63" modified="2008-01-15" version="1">MHLPSVKLFLEVSEAGSISKVAARRHTVQSHISRQISEFEASLGGPLLRRTGRGVTLTPLGARAALRLRSWLQETEQLQETLRADAGQLWGEVRLGIVPSGAHPLMTHVFDWLQREHPGIRLNITEAQGTELDALLDSGAVDLAILFRFARPAGGDERLLSTAHSYLVSRPGDPLTLAPTTEFAALDGLQLVLPRRPSHWRDALDEAAHSHGFRLAAAAEADSLTVQKELVAHAPGLYSVIGPYSIDAELRQGRLQASRLVNPGLVRHVTLALPRHGKLTQACRVVGDAIEALTQAWGQQLSPGPLSTSGLLGEPARPKGRPRPQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="80" xmlns="http://uniprot.org/uniprot">
    <accession>A9BXN8</accession>
    <name>A9BXN8_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="8 19">Adenosylcobinamide-GDP ribazoletransferase</fullName>
            <ecNumber evidence="7 19">2.7.8.26</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="18 19">Cobalamin synthase</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="17 19">Cobalamin-5'-phosphate synthase</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="19" type="primary">cobS</name>
        <name evidence="20" type="ordered locus">Daci_5686</name>
    </gene>
    <organism evidence="20 21">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="20 21" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="21">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="21" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="21">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="16 19">Joins adenosylcobinamide-GDP and alpha-ribazole to generate adenosylcobalamin (Ado-cobalamin). Also synthesizes adenosylcobalamin 5'-phosphate from adenosylcobinamide-GDP and alpha-ribazole 5'-phosphate.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="2 19">
            <text>adenosylcob(III)inamide-GDP + alpha-ribazole 5'-phosphate = adenosylcob(III)alamin 5'-phosphate + GMP + H(+)</text>
            <dbReference type="Rhea" id="RHEA:23560"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:57918"/>
            <dbReference type="ChEBI" id="CHEBI:58115"/>
            <dbReference type="ChEBI" id="CHEBI:60487"/>
            <dbReference type="ChEBI" id="CHEBI:60493"/>
            <dbReference type="EC" id="2.7.8.26"/>
        </reaction>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1 19">
            <text>adenosylcob(III)inamide-GDP + alpha-ribazole = adenosylcob(III)alamin + GMP + H(+)</text>
            <dbReference type="Rhea" id="RHEA:16049"/>
            <dbReference type="ChEBI" id="CHEBI:10329"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:18408"/>
            <dbReference type="ChEBI" id="CHEBI:58115"/>
            <dbReference type="ChEBI" id="CHEBI:60487"/>
            <dbReference type="EC" id="2.7.8.26"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="3 19">
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </cofactor>
    </comment>
    <comment type="pathway">
        <text evidence="5 19">Cofactor biosynthesis; adenosylcobalamin biosynthesis; adenosylcobalamin from cob(II)yrinate a,c-diamide: step 7/7.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="19">Cell inner membrane</location>
            <topology evidence="19">Multi-pass membrane protein</topology>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="4">Membrane</location>
            <topology evidence="4">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="6 19">Belongs to the CobS family.</text>
    </comment>
    <dbReference type="EC" id="2.7.8.26" evidence="7 19"/>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX38314.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012207483.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_5686"/>
    <dbReference type="PRIDE" id="A9BXN8"/>
    <dbReference type="EnsemblBacteria" id="ABX38314">
        <property type="protein sequence ID" value="ABX38314"/>
        <property type="gene ID" value="Daci_5686"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_5686"/>
    <dbReference type="eggNOG" id="COG0368">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_057426_1_1_4"/>
    <dbReference type="OMA" id="GHTGDTY"/>
    <dbReference type="UniPathway" id="UPA00148">
        <property type="reaction ID" value="UER00238"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051073">
        <property type="term" value="F:adenosylcobinamide-GDP ribazoletransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008818">
        <property type="term" value="F:cobalamin 5'-phosphate synthase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009236">
        <property type="term" value="P:cobalamin biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00719">
        <property type="entry name" value="CobS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003805">
        <property type="entry name" value="CobS"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR34148">
        <property type="entry name" value="PTHR34148"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02654">
        <property type="entry name" value="CobS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="19" id="KW-0997">Cell inner membrane</keyword>
    <keyword evidence="9 19" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="10 19" id="KW-0169">Cobalamin biosynthesis</keyword>
    <keyword evidence="13 19" id="KW-0460">Magnesium</keyword>
    <keyword evidence="15 19" id="KW-0472">Membrane</keyword>
    <keyword evidence="21" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="11 19" id="KW-0808">Transferase</keyword>
    <keyword evidence="12 19" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="14 19" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="19">
        <location>
            <begin position="6"/>
            <end position="29"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="19">
        <location>
            <begin position="41"/>
            <end position="62"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="19">
        <location>
            <begin position="68"/>
            <end position="85"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="19">
        <location>
            <begin position="118"/>
            <end position="141"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="19">
        <location>
            <begin position="189"/>
            <end position="210"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="19">
        <location>
            <begin position="216"/>
            <end position="235"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00000357"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00001017"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00001946"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00004663"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00010561"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00013200"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00015850"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00022573"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="12">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="13">
        <source>
            <dbReference type="ARBA" id="ARBA00022842"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="14">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="15">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="16">
        <source>
            <dbReference type="ARBA" id="ARBA00025228"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="17">
        <source>
            <dbReference type="ARBA" id="ARBA00032605"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="18">
        <source>
            <dbReference type="ARBA" id="ARBA00032853"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="19">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00719"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="20">
        <source>
            <dbReference type="EMBL" id="ABX38314.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="21">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="270" mass="28220" checksum="3C91F366281DA9A2" modified="2008-01-15" version="1">MQPLRHFVLAVQFFSRIPVTGRLAAWAGWSPQLQHASVAHLPGVGWLVGAWGAACLTATGWLLAPSPWMPLVAAVLSTVATLWLTGGLHEDGLADVADGLGGFVPPERALEIMKDSRLGAYGAMALVMALLAKLSLVALLVDVRVQWAALLLCSIHVLSRMAPLALMQCLPYVGQAAHSKALHAAGRPLAARGLVAAILWCLPALALTGWLAGLPLVIGLVLPGALATAAMVRWLRRRLGGMTGDCLGAAQQVCELAMLLGAAAVLVRVQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="68" xmlns="http://uniprot.org/uniprot">
    <accession>A9BXP2</accession>
    <name>A9BXP2_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">Type II secretion system protein H</fullName>
        </recommendedName>
        <alternativeName>
            <fullName evidence="11">General secretion pathway protein H</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="15" type="ordered locus">Daci_5690</name>
    </gene>
    <organism evidence="15 16">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="15 16" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="16">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="16" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="16">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="2">Cell inner membrane</location>
            <topology evidence="2">Single-pass membrane protein</topology>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Single-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="10">Belongs to the GSP H family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX38318.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_5690"/>
    <dbReference type="PRIDE" id="A9BXP2"/>
    <dbReference type="EnsemblBacteria" id="ABX38318">
        <property type="protein sequence ID" value="ABX38318"/>
        <property type="gene ID" value="Daci_5690"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_5690"/>
    <dbReference type="eggNOG" id="COG4970">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_113215_3_0_4"/>
    <dbReference type="OMA" id="QGPAELW"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015627">
        <property type="term" value="C:type II protein secretion system complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015628">
        <property type="term" value="P:protein secretion by the type II secretion system"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012902">
        <property type="entry name" value="N_methyl_site"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045584">
        <property type="entry name" value="Pilin-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR022346">
        <property type="entry name" value="T2SS_GspH"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002416">
        <property type="entry name" value="T2SS_protein-GspH"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12019">
        <property type="entry name" value="GspH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07963">
        <property type="entry name" value="N_methyl"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54523">
        <property type="entry name" value="SSF54523"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR02532">
        <property type="entry name" value="IV_pilin_GFxxxE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01708">
        <property type="entry name" value="typeII_sec_gspH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00409">
        <property type="entry name" value="PROKAR_NTER_METHYL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="6" id="KW-0997">Cell inner membrane</keyword>
    <keyword evidence="4" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="9 13" id="KW-0472">Membrane</keyword>
    <keyword evidence="5" id="KW-0488">Methylation</keyword>
    <keyword evidence="16" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="7 13" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="8 13" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="13">
        <location>
            <begin position="53"/>
            <end position="76"/>
        </location>
    </feature>
    <feature type="domain" description="GspH" evidence="14">
        <location>
            <begin position="87"/>
            <end position="177"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="12">
        <location>
            <begin position="1"/>
            <end position="35"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004167"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00004377"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00021549"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022481"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022519"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00025772"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="ARBA" id="ARBA00030775"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="12">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="13">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="14">
        <source>
            <dbReference type="Pfam" id="PF12019"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="15">
        <source>
            <dbReference type="EMBL" id="ABX38318.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="16">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="187" mass="19783" checksum="F18255EF44DD03A5" modified="2008-01-15" version="1">MPTSAAGNKSMARVTARRGRAAPHHRPALPAGLPALMPRQTAPLPLSPPSRGFTLLELMVVISIMAIAAAGVSLSLRDSGQAQLEREAERLAALLESARAQARANGVPVRWRPMPQGFRFEGLPASAQLPSQWLQPGVQAQPATPLVLGPEPLIPPQSVTLTLRDSTSPPLRVATDGLRPFAVQSLP</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="94" xmlns="http://uniprot.org/uniprot">
    <accession>A9BXW9</accession>
    <name>A9BXW9_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">7-cyano-7-deazaguanine synthase</fullName>
            <ecNumber evidence="2">6.3.4.20</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="2">7-cyano-7-carbaguanine synthase</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="2">PreQ(0) synthase</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="2">Queuosine biosynthesis protein QueC</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="2" type="primary">queC</name>
        <name evidence="3" type="ordered locus">Daci_1260</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="4" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="2">Catalyzes the ATP-dependent conversion of 7-carboxy-7-deazaguanine (CDG) to 7-cyano-7-deazaguanine (preQ(0)).</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="2">
            <text>7-carboxy-7-deazaguanine + ATP + NH4(+) = 7-cyano-7-deazaguanine + ADP + H(+) + H2O + phosphate</text>
            <dbReference type="Rhea" id="RHEA:27982"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:28938"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:43474"/>
            <dbReference type="ChEBI" id="CHEBI:45075"/>
            <dbReference type="ChEBI" id="CHEBI:61036"/>
            <dbReference type="ChEBI" id="CHEBI:456216"/>
            <dbReference type="EC" id="6.3.4.20"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="2">
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </cofactor>
        <text evidence="2">Binds 1 zinc ion per subunit.</text>
    </comment>
    <comment type="pathway">
        <text evidence="2">Purine metabolism; 7-cyano-7-deazaguanine biosynthesis.</text>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the QueC family.</text>
    </comment>
    <dbReference type="EC" id="6.3.4.20" evidence="2"/>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX33904.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012203190.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_1260"/>
    <dbReference type="PRIDE" id="A9BXW9"/>
    <dbReference type="EnsemblBacteria" id="ABX33904">
        <property type="protein sequence ID" value="ABX33904"/>
        <property type="gene ID" value="Daci_1260"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_1260"/>
    <dbReference type="eggNOG" id="COG0603">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_081854_0_0_4"/>
    <dbReference type="OMA" id="CESCMRR"/>
    <dbReference type="UniPathway" id="UPA00391"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016879">
        <property type="term" value="F:ligase activity, forming carbon-nitrogen bonds"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008270">
        <property type="term" value="F:zinc ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008616">
        <property type="term" value="P:queuosine biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd01995">
        <property type="entry name" value="ExsB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.620">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01633">
        <property type="entry name" value="QueC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018317">
        <property type="entry name" value="QueC"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014729">
        <property type="entry name" value="Rossmann-like_a/b/a_fold"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR42914">
        <property type="entry name" value="PTHR42914"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF06508">
        <property type="entry name" value="QueC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF006293">
        <property type="entry name" value="ExsB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00364">
        <property type="entry name" value="TIGR00364"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="2" id="KW-0436">Ligase</keyword>
    <keyword evidence="2" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="2" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="1 2" id="KW-0671">Queuosine biosynthesis</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0862">Zinc</keyword>
    <feature type="binding site" evidence="2">
        <location>
            <begin position="25"/>
            <end position="35"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="2">
        <location>
            <position position="213"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="2">
        <location>
            <position position="228"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="2">
        <location>
            <position position="231"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="2">
        <location>
            <position position="234"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022785"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01633"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ABX33904.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="252" mass="28164" checksum="B644D82B32A051F9" modified="2008-01-15" version="1">MRAMQNDSSSPQAPAARHTAALVLFSGGQDSTTCLAQALSLYERVETLGFDYGQRHSVEMQVRQQVRERLSRDFPQWAPRLGDDHVLSLDVLQQIGGSSLTEDVAFAMQADGLPNTFVPGRNLLFLTLAGALAYRRGLSVIVTGVCETDYSGYPDCRDDTMKAMQLALNLGLERRLRIETPLMWIDKAQTWQMAHDLGGDTLVDLIQRDTHTCYQGTRETLHDWGYGCGTCPACDLRARGWHQWQAQRETAN</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="71" xmlns="http://uniprot.org/uniprot">
    <accession>A9BXY6</accession>
    <name>A9BXY6_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="4 6">Glucose-1-phosphate thymidylyltransferase</fullName>
            <ecNumber evidence="4 6">2.7.7.24</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="8" type="ordered locus">Daci_1277</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="9" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="6">Catalyzes the formation of dTDP-glucose, from dTTP and glucose 1-phosphate, as well as its pyrophosphorolysis.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1 6">
            <text>alpha-D-glucose 1-phosphate + dTTP + H(+) = diphosphate + dTDP-alpha-D-glucose</text>
            <dbReference type="Rhea" id="RHEA:15225"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:33019"/>
            <dbReference type="ChEBI" id="CHEBI:37568"/>
            <dbReference type="ChEBI" id="CHEBI:57477"/>
            <dbReference type="ChEBI" id="CHEBI:58601"/>
            <dbReference type="EC" id="2.7.7.24"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="2">
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </cofactor>
    </comment>
    <comment type="similarity">
        <text evidence="3 6">Belongs to the glucose-1-phosphate thymidylyltransferase family.</text>
    </comment>
    <dbReference type="EC" id="2.7.7.24" evidence="4 6"/>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX33921.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012203207.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_1277"/>
    <dbReference type="PRIDE" id="A9BXY6"/>
    <dbReference type="EnsemblBacteria" id="ABX33921">
        <property type="protein sequence ID" value="ABX33921"/>
        <property type="gene ID" value="Daci_1277"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_1277"/>
    <dbReference type="eggNOG" id="COG1209">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_029499_9_0_4"/>
    <dbReference type="OMA" id="FTWLDTG"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008879">
        <property type="term" value="F:glucose-1-phosphate thymidylyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0045226">
        <property type="term" value="P:extracellular polysaccharide biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd02538">
        <property type="entry name" value="G1P_TT_short"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.550.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005907">
        <property type="entry name" value="G1P_thy_trans_s"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005835">
        <property type="entry name" value="NTP_transferase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029044">
        <property type="entry name" value="Nucleotide-diphossugar_trans"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43532">
        <property type="entry name" value="PTHR43532"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00483">
        <property type="entry name" value="NTP_transferase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53448">
        <property type="entry name" value="SSF53448"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01207">
        <property type="entry name" value="rmlA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="6" id="KW-0460">Magnesium</keyword>
    <keyword evidence="6" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="6" id="KW-0548">Nucleotidyltransferase</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="5 6 8" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="NTP_transferase" evidence="7">
        <location>
            <begin position="6"/>
            <end position="242"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001095"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00001946"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00010480"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00012461"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="RuleBase" id="RU003706"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="Pfam" id="PF00483"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="ABX33921.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="296" mass="32827" checksum="7CAAB6DCC0A08A80" modified="2008-01-15" version="1">MNQTRKGIILAGGSGTRLHPATLAISKQLLPVYDKPMIYYPLSALMLAGIREILVISTPQDTPRFEQLLGDGSQWGLKLEYAVQPSPDGLAQAFLIAEDFLAGAPSALVLGDNIYYGHDFPRLLERADARSEGATVFAYHVQDPERYGVAEFDAQGRVLSLEEKPKQPRSNYAVTGLYFYDNQVVELAKSIKPSARGELEITDLNRLYLDKGQLNVELMGRGYAWLDTGTHDSLLEAGQFIATLQQRQGLKVSCPEEIAFRQGWIDRAQLETLGQALAKNGYGQYLLQILKEKVHA</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-01-19" version="57" xmlns="http://uniprot.org/uniprot">
    <accession>A9BYF0</accession>
    <name>A9BYF0_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="3">NLP/P60 protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Daci_1646</name>
        <name evidence="4" type="ordered locus">Daci_4081</name>
    </gene>
    <organism evidence="3 5">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 5" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">DSM 14801 / SPH-1</strain>
            <strain evidence="3">SPH-1</strain>
        </source>
    </reference>
    <reference evidence="5" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="3">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="3">SPH-1</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the peptidase C40 family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX34289.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX36712.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012203574.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_1646"/>
    <dbReference type="EnsemblBacteria" id="ABX34289">
        <property type="protein sequence ID" value="ABX34289"/>
        <property type="gene ID" value="Daci_1646"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="ABX36712">
        <property type="protein sequence ID" value="ABX36712"/>
        <property type="gene ID" value="Daci_4081"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_1646"/>
    <dbReference type="KEGG" id="dac:Daci_4081"/>
    <dbReference type="eggNOG" id="COG0791">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_115301_2_0_4"/>
    <dbReference type="OMA" id="DESHMIH"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000064">
        <property type="entry name" value="NLP_P60_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038765">
        <property type="entry name" value="Papain-like_cys_pep_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00877">
        <property type="entry name" value="NLPC_P60"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54001">
        <property type="entry name" value="SSF54001"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51935">
        <property type="entry name" value="NLPC_P60"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="NlpC/P60" evidence="2">
        <location>
            <begin position="1"/>
            <end position="135"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00007074"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS51935"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ABX34289.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="ABX36712.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="136" mass="15030" checksum="AAB4600ED34412E1" modified="2008-01-15" version="1">MSDLIDAARKYLGVPFRHRGRTAAGLDCAGLGVLAYRDCGIDVPDVRAYGREPFKNGLMEGLRAALGDPVDDGPLPGDVVVMRFDKDPHHVALIAKAPYADELTMIHADSMHGRVVEHRLSEDWRARIVAVYRRPL</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2020-02-26" version="28" xmlns="http://uniprot.org/uniprot">
    <accession>A9BYF5</accession>
    <name>A9BYF5_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_1651</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX34294.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_1651"/>
    <dbReference type="EnsemblBacteria" id="ABX34294">
        <property type="protein sequence ID" value="ABX34294"/>
        <property type="gene ID" value="Daci_1651"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_1651"/>
    <dbReference type="HOGENOM" id="CLU_2315651_0_0_4"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="33"/>
            <end position="53"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="59"/>
            <end position="76"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX34294.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="89" mass="9581" checksum="53AA7FE9F8BF03C4" modified="2008-01-15" version="1">MLNLGICLAIGWACICRLNSHVARVHKLARARYALLLAGALASGMQPALWGTWTTVGDTIFSACVLAGLLINVARWHGAGHPMRRSDDQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-01-19" version="32" xmlns="http://uniprot.org/uniprot">
    <accession>A9BYL4</accession>
    <name>A9BYL4_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Daci_1917</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="2" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX34557.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012203842.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_1917"/>
    <dbReference type="EnsemblBacteria" id="ABX34557">
        <property type="protein sequence ID" value="ABX34557"/>
        <property type="gene ID" value="Daci_1917"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_1917"/>
    <dbReference type="eggNOG" id="ENOG50344WB">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_2505436_0_0_4"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ABX34557.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="86" mass="10458" checksum="4485C85CFF977C04" modified="2008-01-15" version="1">MSERDEIWDALKEHKKSKFDEDRARFMKQANEDNDGGWSIHTDYHWSRMVAGRRLDYWPSRKKYQYEGRVMRGDVMAFIKKQEGRA</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="58" xmlns="http://uniprot.org/uniprot">
    <accession>A9BYS8</accession>
    <name>A9BYS8_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">Transglut_core2 domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Daci_2183</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="4" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the UPF0162 family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX34823.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012204106.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_2183"/>
    <dbReference type="PRIDE" id="A9BYS8"/>
    <dbReference type="EnsemblBacteria" id="ABX34823">
        <property type="protein sequence ID" value="ABX34823"/>
        <property type="gene ID" value="Daci_2183"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_2183"/>
    <dbReference type="eggNOG" id="COG2912">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_063810_1_0_4"/>
    <dbReference type="OMA" id="LWIAAEH"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR032698">
        <property type="entry name" value="SirB1_N"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13369">
        <property type="entry name" value="Transglut_core2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Transglut_core2" evidence="2">
        <location>
            <begin position="46"/>
            <end position="203"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00007100"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF13369"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ABX34823.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="281" mass="31558" checksum="0EEC75DAA4A29D20" modified="2008-01-15" version="1">MSWSYEDTPTALQYFAALVQSDDHLPLMEAAISIAQDAVPDLDLQAASAELDRLQVRLLQRLAGETDSLQRLRVLNQFFYGELGFGGNLNDYYDPANSYIHHVLQTRRGIPISVALIWLELAAAIDLPAQGVSFPGHFLVKLRLPQGQVVMDPLSGESFSANSLAERLEPFWQNAGLSAEEAAPLGMYLQGASPRDILERMLRNLQEIHHARRDWPLLVAVLNRLAVLRPDMPEIFRDRGLAYAQWGVTERALEDLERFLHSQQGAQAVAVREVIRRLRGL</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="89" xmlns="http://uniprot.org/uniprot">
    <accession>A9BYV7</accession>
    <name>A9BYV7_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="5 11">Cysteine synthase</fullName>
            <ecNumber evidence="5 11">2.5.1.47</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="13" type="ordered locus">Daci_2212</name>
    </gene>
    <organism evidence="13 14">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="13 14" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="14">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="14" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="14">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="1 11">
            <text>hydrogen sulfide + O-acetyl-L-serine = acetate + L-cysteine</text>
            <dbReference type="Rhea" id="RHEA:14829"/>
            <dbReference type="ChEBI" id="CHEBI:29919"/>
            <dbReference type="ChEBI" id="CHEBI:30089"/>
            <dbReference type="ChEBI" id="CHEBI:35235"/>
            <dbReference type="ChEBI" id="CHEBI:58340"/>
            <dbReference type="EC" id="2.5.1.47"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="2 9 11">
            <name>pyridoxal 5'-phosphate</name>
            <dbReference type="ChEBI" id="CHEBI:597326"/>
        </cofactor>
    </comment>
    <comment type="pathway">
        <text evidence="3">Amino-acid biosynthesis; L-cysteine biosynthesis; L-cysteine from L-serine: step 2/2.</text>
    </comment>
    <comment type="similarity">
        <text evidence="4 11">Belongs to the cysteine synthase/cystathionine beta-synthase family.</text>
    </comment>
    <dbReference type="EC" id="2.5.1.47" evidence="5 11"/>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX34852.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_2212"/>
    <dbReference type="PRIDE" id="A9BYV7"/>
    <dbReference type="EnsemblBacteria" id="ABX34852">
        <property type="protein sequence ID" value="ABX34852"/>
        <property type="gene ID" value="Daci_2212"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_2212"/>
    <dbReference type="eggNOG" id="COG0031">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_021018_1_0_4"/>
    <dbReference type="OMA" id="GIRRWPE"/>
    <dbReference type="UniPathway" id="UPA00136">
        <property type="reaction ID" value="UER00200"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004124">
        <property type="term" value="F:cysteine synthase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006535">
        <property type="term" value="P:cysteine biosynthetic process from serine"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.1100">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005856">
        <property type="entry name" value="Cys_synth"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005858">
        <property type="entry name" value="CysM"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001216">
        <property type="entry name" value="P-phosphate_BS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001926">
        <property type="entry name" value="PLP-dep"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036052">
        <property type="entry name" value="Trypto_synt_PLP_dependent"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10314:SF100">
        <property type="entry name" value="PTHR10314:SF100"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00291">
        <property type="entry name" value="PALP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53686">
        <property type="entry name" value="SSF53686"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01136">
        <property type="entry name" value="cysKM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01138">
        <property type="entry name" value="cysM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00901">
        <property type="entry name" value="CYS_SYNTHASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="11" id="KW-0028">Amino-acid biosynthesis</keyword>
    <keyword evidence="8 11" id="KW-0198">Cysteine biosynthesis</keyword>
    <keyword evidence="7 9 11" id="KW-0663">Pyridoxal phosphate</keyword>
    <keyword evidence="14" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="6 11" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="PALP" evidence="12">
        <location>
            <begin position="14"/>
            <end position="294"/>
        </location>
    </feature>
    <feature type="region of interest" description="Pyridoxal phosphate binding" evidence="9">
        <location>
            <begin position="187"/>
            <end position="191"/>
        </location>
    </feature>
    <feature type="binding site" evidence="9">
        <location>
            <position position="84"/>
        </location>
        <ligand>
            <name>pyridoxal 5'-phosphate</name>
            <dbReference type="ChEBI" id="CHEBI:597326"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="9">
        <location>
            <position position="268"/>
        </location>
        <ligand>
            <name>pyridoxal 5'-phosphate</name>
            <dbReference type="ChEBI" id="CHEBI:597326"/>
        </ligand>
    </feature>
    <feature type="modified residue" description="N6-(pyridoxal phosphate)lysine" evidence="10">
        <location>
            <position position="54"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00000298"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00001933"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00004962"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00007103"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00012681"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022898"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00023192"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="PIRSR" id="PIRSR605856-50"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="PIRSR" id="PIRSR605856-51"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="RuleBase" id="RU003985"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="12">
        <source>
            <dbReference type="Pfam" id="PF00291"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="13">
        <source>
            <dbReference type="EMBL" id="ABX34852.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="14">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="307" mass="33212" checksum="7E8611DA192C86FA" modified="2008-01-15" version="1">MAQCEAMKIYPTIEDAIGRTPLVALQRIGAQSRQERGNVVLGKLEGNNPAGSVKDRPALSMIRRAEERGDIKPGDTLIEATSGNTGIALAMAATIKGYRMVLIMPEDLSIERAQTMKAYGAELILTPKSGGMEYARDLADQMVAQGKGVVLDQFGNPDNPRIHYETTGPELWEQTGGEITHFVSAMGTTGTITGVAKFLKEKNPAIRIVGAQPAEGSRIPGIRKWPEEYMPKIYDASLIDETVLVGQDDAEDMARRLAREEGIFAGISAAGACWVAQQIAERENNATIVFVVCDRGDRYLSTGVFPA</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="57" xmlns="http://uniprot.org/uniprot">
    <accession>A9BZ00</accession>
    <name>A9BZ00_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Dehydrogenase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Daci_2255</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="2" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX34895.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012204178.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_2255"/>
    <dbReference type="PRIDE" id="A9BZ00"/>
    <dbReference type="EnsemblBacteria" id="ABX34895">
        <property type="protein sequence ID" value="ABX34895"/>
        <property type="gene ID" value="Daci_2255"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_2255"/>
    <dbReference type="eggNOG" id="COG2084">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_136595_2_1_4"/>
    <dbReference type="OMA" id="WKIANKA"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR032710">
        <property type="entry name" value="NTF2-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR039437">
        <property type="entry name" value="Put_lumazine-bd"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12893">
        <property type="entry name" value="Lumazine_bd_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54427">
        <property type="entry name" value="SSF54427"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ABX34895.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="128" mass="14097" checksum="3490B3B45E754C32" modified="2008-01-15" version="1">MTTANPRLTDHPEEAAVRVPLELYMRGHAEDNSAHMRAAFMPTARIESVREGPLTSWDIETYCARFKGQPAADEATRRRSIDAIDIGGTAASAKITLVHGAITFIDYFVLLKTEAGWKIANKAFHAVV</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="56" xmlns="http://uniprot.org/uniprot">
    <accession>A9BZ26</accession>
    <name>A9BZ26_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Methyltransferase type 12</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_2488</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX35126.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012204407.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_2488"/>
    <dbReference type="PRIDE" id="A9BZ26"/>
    <dbReference type="EnsemblBacteria" id="ABX35126">
        <property type="protein sequence ID" value="ABX35126"/>
        <property type="gene ID" value="Daci_2488"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_2488"/>
    <dbReference type="eggNOG" id="COG0500">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_081790_0_0_4"/>
    <dbReference type="OMA" id="FRGWVAY"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008168">
        <property type="term" value="F:methyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0032259">
        <property type="term" value="P:methylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.150">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013217">
        <property type="entry name" value="Methyltransf_12"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029063">
        <property type="entry name" value="SAM-dependent_MTases_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08242">
        <property type="entry name" value="Methyltransf_12"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53335">
        <property type="entry name" value="SSF53335"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0489">Methyltransferase</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Methyltransf_12" evidence="1">
        <location>
            <begin position="61"/>
            <end position="154"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF08242"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX35126.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="238" mass="25331" checksum="18FFA019104A5B3C" modified="2008-01-15" version="1">MNQALPQAASAAKFDTSRAAEYETQSRIALAGYDACHELAACLLAASLDADPKSVLIGGAGGTGQEILATARLRPQWKFTAADPSDPMLDQTMDRIAAAGLSAQVQAAACAVQDLPAGTVFDAATLIGVLHHVPDDADKLQLLQALSARLAPGAPFILACNRHRYDSEPLFLEAWAMRWRMAGVDEAAVHAKLGKIRQGAVPPASEEAVEQMLAQAGFVQPKRFFSSLFWCAWIAFKA</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="74" xmlns="http://uniprot.org/uniprot">
    <accession>A9BZL2</accession>
    <name>A9BZL2_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Efflux transporter, RND family, MFP subunit</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ordered locus">Daci_3282</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="6" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX35920.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012205120.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_3282"/>
    <dbReference type="PRIDE" id="A9BZL2"/>
    <dbReference type="EnsemblBacteria" id="ABX35920">
        <property type="protein sequence ID" value="ABX35920"/>
        <property type="gene ID" value="Daci_3282"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_3282"/>
    <dbReference type="eggNOG" id="COG0845">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_018816_14_1_4"/>
    <dbReference type="OMA" id="YANIYSP"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016020">
        <property type="term" value="C:membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0022857">
        <property type="term" value="F:transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR032317">
        <property type="entry name" value="HlyD_D23"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006143">
        <property type="entry name" value="RND_pump_MFP"/>
    </dbReference>
    <dbReference type="Pfam" id="PF16576">
        <property type="entry name" value="HlyD_D23"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01730">
        <property type="entry name" value="RND_mfp"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HlyD_D23" evidence="4">
        <location>
            <begin position="47"/>
            <end position="268"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="3">
        <location>
            <begin position="255"/>
            <end position="285"/>
        </location>
    </feature>
    <feature type="coiled-coil region" evidence="2">
        <location>
            <begin position="108"/>
            <end position="180"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="3">
        <location>
            <begin position="264"/>
            <end position="278"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00009477"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="Pfam" id="PF16576"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="ABX35920.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="410" mass="44192" checksum="BF1850FFDB2D44F4" modified="2008-01-15" version="1">MTRTQQRWKAIAVAVVLLAAAGGAAAWWSSRPAVAYQTETVARTDIESTVTAIGTLQPRRYVDVGAQVSGQVTRLRVEPGAQVEKGALLVEIDPSVQRATVDAGRASLAGLRAQLAEQQALRKLAEQQLTRQRQLARDGATREEDLQTAEANLAAAGARMEHLKAQIDQTQATLKADEARLGYTRIYAPMAGTVVSVEAREGQTLNATYQTPNILRIADLSAMTVWTEVSEADVRRVRDDMPVYFTTLGGADQARPRRWSSKVRQVLPSPSASQAPAGGNAGQAPAPATKAVAYTVLFDVDNEDAELMPQMTAQVVFVTGQAAQALTVPLMAVADKAGTTDKAEKAENAEKAGSTQTVRVLDAKGQPEQRTVRLGVRSRHQAEVLEGLQEGERVIVGETPLDRGLRWLQW</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="87" xmlns="http://uniprot.org/uniprot">
    <accession>A9BZN3</accession>
    <name>A9BZN3_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Transcriptional regulator, AraC family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ordered locus">Daci_3303</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
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            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
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            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="6" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX35941.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012205141.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_3303"/>
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    <dbReference type="EnsemblBacteria" id="ABX35941">
        <property type="protein sequence ID" value="ABX35941"/>
        <property type="gene ID" value="Daci_3303"/>
    </dbReference>
    <dbReference type="GeneID" id="60687558"/>
    <dbReference type="KEGG" id="dac:Daci_3303"/>
    <dbReference type="eggNOG" id="COG2207">
        <property type="taxonomic scope" value="Bacteria"/>
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    <dbReference type="HOGENOM" id="CLU_047522_1_1_4"/>
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    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003700">
        <property type="term" value="F:DNA-binding transcription factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043565">
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        <property type="project" value="InterPro"/>
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    <dbReference type="InterPro" id="IPR032687">
        <property type="entry name" value="AraC-type_N"/>
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    <dbReference type="InterPro" id="IPR009057">
        <property type="entry name" value="Homeobox-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018060">
        <property type="entry name" value="HTH_AraC"/>
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    <dbReference type="Pfam" id="PF12625">
        <property type="entry name" value="Arabinose_bd"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12833">
        <property type="entry name" value="HTH_18"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00342">
        <property type="entry name" value="HTH_ARAC"/>
        <property type="match status" value="1"/>
    </dbReference>
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    </dbReference>
    <dbReference type="PROSITE" id="PS01124">
        <property type="entry name" value="HTH_ARAC_FAMILY_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0238">DNA-binding</keyword>
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    <feature type="domain" description="HTH araC/xylS-type" evidence="4">
        <location>
            <begin position="237"/>
            <end position="335"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023015"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023163"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="PROSITE" id="PS01124"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="ABX35941.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="338" mass="37724" checksum="CD7C401A702FE671" modified="2008-01-15" version="1">MTTQRSSSAAWVRGILDMMATEGLAPQSLCAAADIDLAALQHSQARTDVDRVSRLWELAVAQSANPTLGLDRQLAARHGNIDLVGYSLASGPHLLAGFRDLERHMAVISDATSFTLERDARGYWLSIHHIGATRPVPRQRVEFAVLTLLVLCNWLTRRDVRPLAVEFMAEAPAPSHEAAYRAAFGLLPRFGEDANRFLLSEADLLAPIPTHNPELLALHEKLVETELDHLGQAGVGARVRHEIARLLPQGEPRREDVASLLGLTDRTLQRRLQAEDTSYQQLLDETRRELALQYLGEPRRSLAEVADLLGFVDQSNLFRACRRWFGMPPGQYRQQLRA</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="36" xmlns="http://uniprot.org/uniprot">
    <accession>A9C030</accession>
    <name>A9C030_DELAS</name>
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    <organism evidence="3 4">
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                <person name="Fischer K."/>
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        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
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            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="4" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX36292.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
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    <dbReference type="EnsemblBacteria" id="ABX36292">
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        <property type="gene ID" value="Daci_3660"/>
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    <dbReference type="GeneID" id="60687900"/>
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        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0732">Signal</keyword>
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        <location>
            <begin position="1"/>
            <end position="19"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5002732729" evidence="2">
        <location>
            <begin position="20"/>
            <end position="73"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="29"/>
            <end position="73"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic residues" evidence="1">
        <location>
            <begin position="47"/>
            <end position="73"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ABX36292.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="73" mass="7172" checksum="39634CC694A617D2" modified="2008-01-15" version="1">MKKLLAVLIAGSFAAGAFAQAAAAPEAPMSAPTAASAAAPAHTAKKAKVAKSGKHSGKKHAKRSTKKAHKAVA</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="57" xmlns="http://uniprot.org/uniprot">
    <accession>A9C0B6</accession>
    <name>A9C0B6_DELAS</name>
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        <submittedName>
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    <organism evidence="2 3">
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        <lineage>
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            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
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    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
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                <person name="Fischer K."/>
                <person name="Cook A.M."/>
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            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX36682.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_4051"/>
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        <property type="protein sequence ID" value="ABX36682"/>
        <property type="gene ID" value="Daci_4051"/>
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    </dbReference>
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    </dbReference>
    <dbReference type="CDD" id="cd01949">
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        <property type="match status" value="1"/>
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    </dbReference>
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        <property type="entry name" value="GGDEF_dom"/>
    </dbReference>
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        <property type="entry name" value="Nucleotide_cyclase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043128">
        <property type="entry name" value="Rev_trsase/Diguanyl_cyclase"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00990">
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        <property type="match status" value="1"/>
    </dbReference>
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        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
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        <location>
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            <end position="337"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS50887"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX36682.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="356" mass="39984" checksum="F4E7A3C514CB7A3B" modified="2008-01-15" version="1">MSAAEPVAPSSNTRPRMQPLLQNLVEMTAHRDHLRLEISVLSTLFKLNGVVQVRALELFAMPDGRHCVRARTWSQGDQVMSTDAEALYDPQSVELASMPALQQALQQRALIASAVQPDGQHVLWLPLWRQETAYHCLEITQSTAFSPSRLDVIQGIFGVYHNYQSLLDYSERDALTGLLNRKTFDEQFLRLSLQEAPMAMPGVATEDVPGQWLAAIDIDHFKRINDRFGHLYGDEVLILVANILRSCFDAKDRVFRFGGEEFVVLLRSVSLVNARKALERLRHDVESYEFPQVGRITVSTGFAAMGTGAPVEVLGHADQALYHAKEHGRNQTWYYGDLITQGLLAPQVNSNDIELF</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="43" xmlns="http://uniprot.org/uniprot">
    <accession>A9C0C0</accession>
    <name>A9C0C0_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Daci_4055</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
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        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
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    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
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                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
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            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="4" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX36686.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="PRIDE" id="A9C0C0"/>
    <dbReference type="EnsemblBacteria" id="ABX36686">
        <property type="protein sequence ID" value="ABX36686"/>
        <property type="gene ID" value="Daci_4055"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_4055"/>
    <dbReference type="eggNOG" id="ENOG5033B3T">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_2057547_0_0_4"/>
    <dbReference type="OMA" id="WVERETI"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="2" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="42"/>
            <end position="64"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="41"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Pro residues" evidence="1">
        <location>
            <begin position="25"/>
            <end position="39"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ABX36686.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="119" mass="13235" checksum="1D88E5E6139544C7" modified="2008-01-15" version="1">MAQPQTPEPHSSEPAPAASANGSDPAKPPTPPKPSKPPKSRIVPWLIGLPVAFFAVLMLAGQLLSTPEGEARWVERETIKICRKETARPEAERKTQQFESVQDCDRLEFDFKQRYGENP</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="35" xmlns="http://uniprot.org/uniprot">
    <accession>A9C0D1</accession>
    <name>A9C0D1_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Daci_4066</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="2" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX36697.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012205891.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_4066"/>
    <dbReference type="PRIDE" id="A9C0D1"/>
    <dbReference type="EnsemblBacteria" id="ABX36697">
        <property type="protein sequence ID" value="ABX36697"/>
        <property type="gene ID" value="Daci_4066"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_4066"/>
    <dbReference type="HOGENOM" id="CLU_1872041_0_0_4"/>
    <dbReference type="OMA" id="NRPNRTW"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ABX36697.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="131" mass="14605" checksum="E1DBCEEB2C11C256" modified="2008-01-15" version="1">MRELSNNDFNDFWEGIAQDKPLRTPDKGRTASFTVTRRNATGLEVRTNKGNTVRIRREAFCAVLRHLAQEHHGLERPCVVASSYDVPGFLGFAAKQANDNAAVVITYILPILQDAGIVGIDGNRPNRTWLL</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="67" xmlns="http://uniprot.org/uniprot">
    <accession>A9C0I8</accession>
    <name>A9C0I8_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="4">6-phosphogluconate dehydrogenase NAD-binding</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ordered locus">Daci_4431</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="5" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX37061.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_4431"/>
    <dbReference type="PRIDE" id="A9C0I8"/>
    <dbReference type="EnsemblBacteria" id="ABX37061">
        <property type="protein sequence ID" value="ABX37061"/>
        <property type="gene ID" value="Daci_4431"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_4431"/>
    <dbReference type="eggNOG" id="COG2084">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_052530_1_1_4"/>
    <dbReference type="OMA" id="CYDKYAF"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0050661">
        <property type="term" value="F:NADP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016491">
        <property type="term" value="F:oxidoreductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016054">
        <property type="term" value="P:organic acid catabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.1040.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008927">
        <property type="entry name" value="6-PGluconate_DH-like_C_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013328">
        <property type="entry name" value="6PGD_dom2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006115">
        <property type="entry name" value="6PGDH_NADP-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015815">
        <property type="entry name" value="HIBADH-related"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036291">
        <property type="entry name" value="NAD(P)-bd_dom_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03446">
        <property type="entry name" value="NAD_binding_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF000103">
        <property type="entry name" value="HIBADH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48179">
        <property type="entry name" value="SSF48179"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51735">
        <property type="entry name" value="SSF51735"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0520">NAD</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="NAD_binding_2" evidence="3">
        <location>
            <begin position="8"/>
            <end position="140"/>
        </location>
    </feature>
    <feature type="active site" evidence="2">
        <location>
            <position position="165"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023027"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="PIRSR" id="PIRSR000103-1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF03446"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="ABX37061.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="286" mass="30233" checksum="790577368B0B6C27" modified="2008-01-15" version="1">MVGACYMQAFVEQGHSLVGLCDLQPNAAVADAVQAAGAQVHTAPGAWLAEADVVVSAVFGTVARSLFEACLPHLRHLREGVVYVDMTTADPQEMRECGELARRVAQGRAVHFVDVAITGAVNLGGRKTPLLVAGGKAGFVQELFLPFGGSVRVVGGQPGDAAALKLLRSIYTKGTEALAVECLVTAQQMGLREQLHAVLQDIDETPLRTLMESMVRTHIPHSARRRNEVAEARQQMARNGLSPIASPAVEALFAATARAHAAQPFTGTSTDEAIDWLGSHVLASQA</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="65" xmlns="http://uniprot.org/uniprot">
    <accession>A9C114</accession>
    <name>A9C114_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="7">Precorrin-2 C(20)-methyltransferase</fullName>
            <ecNumber evidence="7">2.1.1.130</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="9" type="ordered locus">Daci_5849</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="9 10" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="10" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="7">Methylates precorrin-2 at the C-20 position to produce precorrin-3A.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="7">
            <text>precorrin-2 + S-adenosyl-L-methionine = H(+) + precorrin-3A + S-adenosyl-L-homocysteine</text>
            <dbReference type="Rhea" id="RHEA:16841"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:57856"/>
            <dbReference type="ChEBI" id="CHEBI:58561"/>
            <dbReference type="ChEBI" id="CHEBI:58827"/>
            <dbReference type="ChEBI" id="CHEBI:59789"/>
            <dbReference type="EC" id="2.1.1.130"/>
        </reaction>
    </comment>
    <comment type="pathway">
        <text evidence="1">Cofactor biosynthesis; adenosylcobalamin biosynthesis.</text>
    </comment>
    <comment type="subunit">
        <text evidence="7">Homodimer.</text>
    </comment>
    <comment type="similarity">
        <text evidence="2 7">Belongs to the precorrin methyltransferase family.</text>
    </comment>
    <dbReference type="EC" id="2.1.1.130" evidence="7"/>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX38477.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012207646.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_5849"/>
    <dbReference type="PRIDE" id="A9C114"/>
    <dbReference type="EnsemblBacteria" id="ABX38477">
        <property type="protein sequence ID" value="ABX38477"/>
        <property type="gene ID" value="Daci_5849"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_5849"/>
    <dbReference type="eggNOG" id="COG2243">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_076014_1_1_4"/>
    <dbReference type="OMA" id="MEYPVTT"/>
    <dbReference type="UniPathway" id="UPA00148"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030788">
        <property type="term" value="F:precorrin-2 C20-methyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009236">
        <property type="term" value="P:cobalamin biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0032259">
        <property type="term" value="P:methylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd11645">
        <property type="entry name" value="Precorrin_2_C20_MT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.950.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.1010.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000878">
        <property type="entry name" value="4pyrrol_Mease"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035996">
        <property type="entry name" value="4pyrrol_Methylase_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014777">
        <property type="entry name" value="4pyrrole_Mease_sub1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014776">
        <property type="entry name" value="4pyrrole_Mease_sub2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012382">
        <property type="entry name" value="CobI/CbiL"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006364">
        <property type="entry name" value="CobI/CbiL/CobIJ_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00590">
        <property type="entry name" value="TP_methylase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF036427">
        <property type="entry name" value="Precrrn-2_mtase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53790">
        <property type="entry name" value="SSF53790"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01467">
        <property type="entry name" value="cobI_cbiL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-0169">Cobalamin biosynthesis</keyword>
    <keyword evidence="4 9" id="KW-0489">Methyltransferase</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="6" id="KW-0949">S-adenosyl-L-methionine</keyword>
    <keyword evidence="5 9" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="TP_methylase" evidence="8">
        <location>
            <begin position="15"/>
            <end position="228"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004953"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00005879"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022573"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022603"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022691"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="PIRNR" id="PIRNR036427"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="Pfam" id="PF00590"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="ABX38477.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="256" mass="28093" checksum="EDD9E377B952FBEF" modified="2008-01-15" version="1">MSSRQPRPGQGGPGIVCVGLGPGDPELMSVKADRLVRGARQVAFFRKKGRPGKARQLVDGLLAQGAAEHAMEYPVTTELPVDSPAYVDLLARFYDDWCLRLEALAQTEQVVVLCEGDPFLYGSFMHLYTRLRERGQVPLDVVPGIPGMVGCWHATGEPITWGDDVLSVMTGTLSEDELVRRMQTAEALVVMKVGRNLPRIRRALQRTGRLDAAWLVQNGTTDSEQVARLGDVSDDACPYFAIVLVHGQGRRPEAAW</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="52" xmlns="http://uniprot.org/uniprot">
    <accession>A9C147</accession>
    <name>A9C147_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Sodium:galactoside symporter family protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Daci_5882</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="4" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the sodium:galactoside symporter (TC 2.A.2) family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX38510.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012207679.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_5882"/>
    <dbReference type="PRIDE" id="A9C147"/>
    <dbReference type="EnsemblBacteria" id="ABX38510">
        <property type="protein sequence ID" value="ABX38510"/>
        <property type="gene ID" value="Daci_5882"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_5882"/>
    <dbReference type="eggNOG" id="COG2211">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_027408_8_1_4"/>
    <dbReference type="OMA" id="NSVGIYY"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015293">
        <property type="term" value="F:symporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008643">
        <property type="term" value="P:carbohydrate transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.1250.20">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR039672">
        <property type="entry name" value="MFS_2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036259">
        <property type="entry name" value="MFS_trans_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11328">
        <property type="entry name" value="PTHR11328"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF103473">
        <property type="entry name" value="SSF103473"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="2" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="19"/>
            <end position="37"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="43"/>
            <end position="65"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="86"/>
            <end position="106"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="118"/>
            <end position="137"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="183"/>
            <end position="200"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="245"/>
            <end position="267"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="279"/>
            <end position="296"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="308"/>
            <end position="326"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="332"/>
            <end position="360"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="372"/>
            <end position="392"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="412"/>
            <end position="433"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00009617"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ABX38510.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="445" mass="45910" checksum="300345735DEA10C0" modified="2008-01-15" version="1">MTSVPVPAPAPVLPWRTGLAYGGLAAPLAFVSLPLYVNLPYHYASVAGAPLAGLGAVLLATRALDAVVDPAIGRQADRLLRGGVRPAWRAAALGSLLMVLGFGALWHPPRGSEAAMLGWLAGSLLVCTLAYSFVTILHQAWGTRWGGQPAWRARVTAWREGATLAGVLLASVLPAVMGLDATSAVLALGLALGLMGLYRLRAPVAPAPHVSHVSSAPRMPQPESPASAALASSTSPWADAGFRRLLAIFMLNGVAAAVPATLLPFFVADRLQAPALQPLLLLCFFGAAALGLPLWVKAVSRWGLAPSWRAGMLASVLAFGFTPWLGTGDAMAFAVICLASGLALGADLALPGALLTGVIHESGQGGRGEGRYLGWWTCATKLNLALAAGLALPLLSAAGYRSGGTDPAGLQALAWAYGGLPCLLKLAAALLLWRAERLHSSWSHT</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="82" xmlns="http://uniprot.org/uniprot">
    <accession>A9C1D0</accession>
    <name>A9C1D0_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Transcriptional regulator, LysR family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Daci_5965</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="4" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the LysR transcriptional regulatory family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX38593.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012207762.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_5965"/>
    <dbReference type="PRIDE" id="A9C1D0"/>
    <dbReference type="EnsemblBacteria" id="ABX38593">
        <property type="protein sequence ID" value="ABX38593"/>
        <property type="gene ID" value="Daci_5965"/>
    </dbReference>
    <dbReference type="GeneID" id="60690325"/>
    <dbReference type="KEGG" id="dac:Daci_5965"/>
    <dbReference type="eggNOG" id="COG0583">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_039613_6_0_4"/>
    <dbReference type="OMA" id="MAVEWLP"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003700">
        <property type="term" value="F:DNA-binding transcription factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005119">
        <property type="entry name" value="LysR_subst-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000847">
        <property type="entry name" value="Tscrpt_reg_HTH_LysR"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036390">
        <property type="entry name" value="WH_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00126">
        <property type="entry name" value="HTH_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03466">
        <property type="entry name" value="LysR_substrate"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00039">
        <property type="entry name" value="HTHLYSR"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46785">
        <property type="entry name" value="SSF46785"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50931">
        <property type="entry name" value="HTH_LYSR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HTH lysR-type" evidence="2">
        <location>
            <begin position="1"/>
            <end position="62"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00009437"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS50931"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ABX38593.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="302" mass="32727" checksum="EC806CC2E8ACDF65" modified="2008-01-15" version="1">MKINWSAREVDVFLALADSLSFRRTALQMHLSQSAVSGTLARLEEMLGARLFERTTRAVELTQAGEVFAEQARILRHQMDETVRRVQEVAQVQVGRLALAALPSLAAGLLPRVLARFAAEHPGVHLELFDSLAGPAFDMVRAGRVDFALTAANPAYADLDYLPLASDRFVLLLGRGHALARGRGDLGWADVAHLPHISMPAGTSVRQYADEALLTHGIRFAPQYAVEHLATIAAMVAADLGVSALPLLAAQVVQRPEVVARPLARPVLRRPIGLVRLSGRRLSPAAARMVEMLREEMAALPG</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="85" xmlns="http://uniprot.org/uniprot">
    <accession>A9C1E5</accession>
    <name>A9C1E5_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Two component transcriptional regulator, LuxR family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ordered locus">Daci_5980</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="6" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX38608.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012207777.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_5980"/>
    <dbReference type="PRIDE" id="A9C1E5"/>
    <dbReference type="EnsemblBacteria" id="ABX38608">
        <property type="protein sequence ID" value="ABX38608"/>
        <property type="gene ID" value="Daci_5980"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_5980"/>
    <dbReference type="eggNOG" id="COG2197">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_000445_90_8_4"/>
    <dbReference type="OMA" id="THLNRTM"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000160">
        <property type="term" value="P:phosphorelay signal transduction system"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006355">
        <property type="term" value="P:regulation of transcription, DNA-templated"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd06170">
        <property type="entry name" value="LuxR_C_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011006">
        <property type="entry name" value="CheY-like_superfamily"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016032">
        <property type="entry name" value="Sig_transdc_resp-reg_C-effctor"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001789">
        <property type="entry name" value="Sig_transdc_resp-reg_receiver"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000792">
        <property type="entry name" value="Tscrpt_reg_LuxR_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00196">
        <property type="entry name" value="GerE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00072">
        <property type="entry name" value="Response_reg"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00038">
        <property type="entry name" value="HTHLUXR"/>
    </dbReference>
    <dbReference type="SMART" id="SM00421">
        <property type="entry name" value="HTH_LUXR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00448">
        <property type="entry name" value="REC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46894">
        <property type="entry name" value="SSF46894"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52172">
        <property type="entry name" value="SSF52172"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50043">
        <property type="entry name" value="HTH_LUXR_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50110">
        <property type="entry name" value="RESPONSE_REGULATORY"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="2" id="KW-0597">Phosphoprotein</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Response regulatory" evidence="4">
        <location>
            <begin position="18"/>
            <end position="134"/>
        </location>
    </feature>
    <feature type="domain" description="HTH luxR-type" evidence="3">
        <location>
            <begin position="158"/>
            <end position="223"/>
        </location>
    </feature>
    <feature type="modified residue" description="4-aspartylphosphate" evidence="2">
        <location>
            <position position="69"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00169"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="PROSITE" id="PS50043"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="PROSITE" id="PS50110"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="ABX38608.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="245" mass="25658" checksum="997AB525694CBF19" modified="2008-01-15" version="1">MHSHPLLTDSSCLQSGRYALVIDDHPLTAMGVSEFLKQFGLSEVHAVADAGEGLQCMAGRGSPHLAIVDFWLGASAGTDVVREIRTLAPACRVLMTSGDTHGAIALKARAAGAHGFVLKSQPPQVLQQAVAALLRGETWFPAAPLAPQSPGGAHAIRMTAAELGLTPRQAQVLDLVLRGLPNPSIAQLLHLSPHTVKEHVAGALQRLGVHSRIDAITRMQGIALELPPSVPPTDTVQAPATASLR</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-01-19" version="44" xmlns="http://uniprot.org/uniprot">
    <accession>A9C240</accession>
    <name>A9C240_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Putative lipoprotein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_3038</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX35676.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012204882.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_3038"/>
    <dbReference type="EnsemblBacteria" id="ABX35676">
        <property type="protein sequence ID" value="ABX35676"/>
        <property type="gene ID" value="Daci_3038"/>
    </dbReference>
    <dbReference type="GeneID" id="60687344"/>
    <dbReference type="KEGG" id="dac:Daci_3038"/>
    <dbReference type="eggNOG" id="ENOG50312WH">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_129198_0_0_4"/>
    <dbReference type="OMA" id="AMMDIFD"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018530">
        <property type="entry name" value="SiaC"/>
    </dbReference>
    <dbReference type="Pfam" id="PF09345">
        <property type="entry name" value="SiaC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0449">Lipoprotein</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="SiaC" evidence="1">
        <location>
            <begin position="6"/>
            <end position="129"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF09345"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX35676.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="133" mass="14782" checksum="E81F5F0FA59F2DDC" modified="2008-01-15" version="1">MDNLYIAPTPSSPEVDFQFDTHTLHLRGESYPENAAAFYGGILARLKDYLAQPQPAQQQARIEVHIALAYFNSSSTKMLFNLIEALSGAAEAGRPVALHWYHDEEDDTICEFGEELRDDFPAIAFTGHPVKAA</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2021-06-02" version="44" xmlns="http://uniprot.org/uniprot">
    <accession>A9C2D7</accession>
    <name>A9C2D7_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Daci_3443</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="2" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX36081.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012205281.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_3443"/>
    <dbReference type="EnsemblBacteria" id="ABX36081">
        <property type="protein sequence ID" value="ABX36081"/>
        <property type="gene ID" value="Daci_3443"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_3443"/>
    <dbReference type="eggNOG" id="ENOG502Z89C">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_096743_0_0_4"/>
    <dbReference type="OMA" id="SFDDQPA"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ABX36081.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="251" mass="26426" checksum="CE2A23D03CC6005B" modified="2008-01-15" version="1">MAARSFLGAGDIYINRLIDGIPQGLVGPIYANSFQLQPAVNTVQSTSKGRNDYGQVLESVNIAQPTTFTMELKEVTGDILTMAFLGTDAALNEAAGTLADAPVTVKLGKWVALGKRNLDDLISVENTGGTTTYVEGTDYKLNRPMGWIMALAGGAIADAATVNVSGAYSAAKGRTIKGSTRTEVRAHIVFDGINQADGTQCTVNVWEAVLSADSAFDFLADDFGNVSLTGNLKTPTGKDAPYIVEVQDPVQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="45" xmlns="http://uniprot.org/uniprot">
    <accession>A9C2E0</accession>
    <name>A9C2E0_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Daci_3448</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="2" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX36084.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012205284.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_3448"/>
    <dbReference type="PRIDE" id="A9C2E0"/>
    <dbReference type="EnsemblBacteria" id="ABX36084">
        <property type="protein sequence ID" value="ABX36084"/>
        <property type="gene ID" value="Daci_3448"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_3448"/>
    <dbReference type="eggNOG" id="ENOG5031TJ3">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_058831_0_0_4"/>
    <dbReference type="OMA" id="WAKWANV"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ABX36084.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="391" mass="39100" checksum="B0C20CC19F2093F0" modified="2008-01-15" version="1">MIYTFDSTQSGAPVLSGTAGALAALLKTCLVDGFGAGTVSSLVVTSGAAKLTYPGTHPFKVGSVARIAGATPAGLNGDQLVTETTGNTASFTAPNVADGPASGTITSRAAPAGWQELFPGLSNVLLLKPTAVEASGCVLRLDDTSATVARVVGFETATSNTTGVGAFPTEAQYAGGMYWPKSDATGGAARAWRLVADAQALHLWLAPQAANQQHGVLFSFGDLVADKSGDAYACLLTGGGAGATTTTSAVPGCLGYAHATSASADCYVPRATTGLGSAQLAKKVAAYNTAAGYAGTTAYNGNALPYPNPADNSLRLAPVDVLVGTSGMRGRIAGVHHSPQILGDAFSTGDMVVGTGVYADRRMLVLRVGAPGAALGNAGAAFIDITGPWRL</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2021-06-02" version="26" xmlns="http://uniprot.org/uniprot">
    <accession>A9C2E6</accession>
    <name>A9C2E6_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Daci_3454</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="2" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX36090.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012205290.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_3454"/>
    <dbReference type="EnsemblBacteria" id="ABX36090">
        <property type="protein sequence ID" value="ABX36090"/>
        <property type="gene ID" value="Daci_3454"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_3454"/>
    <dbReference type="HOGENOM" id="CLU_2342134_0_0_4"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ABX36090.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="97" mass="10425" checksum="5119E45A02911937" modified="2008-01-15" version="1">MKTILYGPVTEAHLTDASLFSGIDPTAFITNGTRRPPVTALPVETIPVCPLVGDNAGELQNHWRLVLAADALILVGQNDHLLHAAGRYSLPIYHSEA</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="32" xmlns="http://uniprot.org/uniprot">
    <accession>A9C2E8</accession>
    <name>A9C2E8_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Daci_3456</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="2" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX36092.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012205292.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_3456"/>
    <dbReference type="PRIDE" id="A9C2E8"/>
    <dbReference type="EnsemblBacteria" id="ABX36092">
        <property type="protein sequence ID" value="ABX36092"/>
        <property type="gene ID" value="Daci_3456"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_3456"/>
    <dbReference type="HOGENOM" id="CLU_2805359_0_0_4"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ABX36092.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="76" mass="8370" checksum="42DA3AB3C70B9443" modified="2008-01-15" version="1">MKEHPPFGTAPIRCGRTRCSWRGYETDLNKVPGTIGGVSCTCIACPTCGCDSYSFMTAGEIKAWERKQRAQAHKES</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="67" xmlns="http://uniprot.org/uniprot">
    <accession>A9C2S5</accession>
    <name>A9C2S5_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Periplasmic binding protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ordered locus">Daci_3792</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="5" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX36424.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012205618.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_3792"/>
    <dbReference type="PRIDE" id="A9C2S5"/>
    <dbReference type="EnsemblBacteria" id="ABX36424">
        <property type="protein sequence ID" value="ABX36424"/>
        <property type="gene ID" value="Daci_3792"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_3792"/>
    <dbReference type="eggNOG" id="COG0614">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_038034_7_2_4"/>
    <dbReference type="OMA" id="YELSESC"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002491">
        <property type="entry name" value="ABC_transptr_periplasmic_BD"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01497">
        <property type="entry name" value="Peripla_BP_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50983">
        <property type="entry name" value="FE_B12_PBP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="2">
        <location>
            <begin position="1"/>
            <end position="21"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5002736240" evidence="2">
        <location>
            <begin position="22"/>
            <end position="350"/>
        </location>
    </feature>
    <feature type="domain" description="Fe/B12 periplasmic-binding" evidence="3">
        <location>
            <begin position="68"/>
            <end position="345"/>
        </location>
    </feature>
    <feature type="coiled-coil region" evidence="1">
        <location>
            <begin position="193"/>
            <end position="220"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="PROSITE" id="PS50983"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="ABX36424.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="350" mass="37977" checksum="505000D4C9FAD8AE" modified="2008-01-15" version="1">MAMARSKSLHGLHGLCAGALAATLLLAGCSRSDSGTTSELPAPAAAPQAAVTVNVCGSPVTYASAPLRAVTHDVNITEMFLFLGLGDRLVGYSGITQAKQIDPAFQAQLARVPRLAEREMNLEAILGASADFVFGGWSYGFRQGQVTPEVLQRHGIASYVLSESCIRVGPRSQVALEDGLTDLRNLGRIFRIDAHAEQLAQGLERELKDLRERMQGVRQRPSVFVYDSGQDIPVTVGRYGMPQAMIEEAGGRNIFDDIPSNWPAGNWEDVVQRNPQWIVIIDYGQPHAQGKIDFLLAKPELAGVDAIREKRFFVMTYAEATPGPRNIARTRALAQALHPDRMPAPSHAAN</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2021-09-29" version="47" xmlns="http://uniprot.org/uniprot">
    <accession>A9C301</accession>
    <name>A9C301_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_4174</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX36805.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012205983.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_4174"/>
    <dbReference type="EnsemblBacteria" id="ABX36805">
        <property type="protein sequence ID" value="ABX36805"/>
        <property type="gene ID" value="Daci_4174"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_4174"/>
    <dbReference type="eggNOG" id="ENOG502ZCAN">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_144602_1_0_4"/>
    <dbReference type="OMA" id="MKRGRPD"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR021877">
        <property type="entry name" value="DUF3487"/>
    </dbReference>
    <dbReference type="Pfam" id="PF11990">
        <property type="entry name" value="DUF3487"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR03750">
        <property type="entry name" value="conj_TIGR03750"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="35"/>
            <end position="55"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="61"/>
            <end position="82"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX36805.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="136" mass="14978" checksum="2ACC07C5CC7EEE43" modified="2008-01-15" version="1">MSEQQHVRADGTVTFLPHRLNRHPVVVRGLTADELWICCGLSGAAGLVVGAPLSWVLRTIAIAPTFVVLGVALGVFIGGGILRRLKRGRPDTWLYRQLQWRIATRHPLMAAWVGGHVLISRSGFWTIRRGMHGGAR</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="67" xmlns="http://uniprot.org/uniprot">
    <accession>A9C326</accession>
    <name>A9C326_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Cell divisionFtsK/SpoIIIE</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Daci_4199</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="4" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX36830.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_4199"/>
    <dbReference type="PRIDE" id="A9C326"/>
    <dbReference type="EnsemblBacteria" id="ABX36830">
        <property type="protein sequence ID" value="ABX36830"/>
        <property type="gene ID" value="Daci_4199"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_4199"/>
    <dbReference type="eggNOG" id="COG1674">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_008270_0_0_4"/>
    <dbReference type="OMA" id="EFNAYTD"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051301">
        <property type="term" value="P:cell division"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002543">
        <property type="entry name" value="FtsK_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01580">
        <property type="entry name" value="FtsK_SpoIIIE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50901">
        <property type="entry name" value="FTSK"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="3" id="KW-0131">Cell cycle</keyword>
    <keyword evidence="3" id="KW-0132">Cell division</keyword>
    <keyword evidence="1" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="FtsK" evidence="2">
        <location>
            <begin position="380"/>
            <end position="576"/>
        </location>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <begin position="398"/>
            <end position="405"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00289"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS50901"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ABX36830.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="894" mass="99174" checksum="A642ED164DF0616F" modified="2008-01-15" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="59" xmlns="http://uniprot.org/uniprot">
    <accession>A9C367</accession>
    <name>A9C367_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Isochorismatase hydrolase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Daci_4549</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="4" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX37178.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_4549"/>
    <dbReference type="PRIDE" id="A9C367"/>
    <dbReference type="EnsemblBacteria" id="ABX37178">
        <property type="protein sequence ID" value="ABX37178"/>
        <property type="gene ID" value="Daci_4549"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_4549"/>
    <dbReference type="eggNOG" id="COG1335">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_068979_5_1_4"/>
    <dbReference type="OMA" id="TQNCVTH"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016787">
        <property type="term" value="F:hydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.850">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000868">
        <property type="entry name" value="Isochorismatase-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036380">
        <property type="entry name" value="Isochorismatase-like_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00857">
        <property type="entry name" value="Isochorismatase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52499">
        <property type="entry name" value="SSF52499"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Isochorismatase" evidence="2">
        <location>
            <begin position="109"/>
            <end position="281"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="80"/>
            <end position="100"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF00857"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ABX37178.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="289" mass="30662" checksum="7C692575BBBC3045" modified="2008-01-15" version="1">MFQCGISTFTGTRPVGAMQGPRPYAPSLRWGIFQSTGDLCRTCTDAGRSVALRRALCVSRLQASTTSRFQEHCMSLAEQASQATQSTSHPTLRALSGAPGRSQLPRGATALLVIDFQNEYFSGRLPIPRGPQVLEQARRLLQWADAGQVAVFHIQHIAPEGAPVFAVNGSTVQFHPGLQPRAGDTVVQKRSVSAFVGTDLADQLRARGITTVVICGLMTHACVAGAARDAAPLGFEVVVASDAVATRAITRSNGESVDADSLHRAALAEIEDVFGDVLSTDGILELALR</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="86" xmlns="http://uniprot.org/uniprot">
    <accession>A9C385</accession>
    <name>A9C385_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Transcriptional regulator, LysR family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Daci_4567</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="4" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the LysR transcriptional regulatory family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX37196.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012206366.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_4567"/>
    <dbReference type="PRIDE" id="A9C385"/>
    <dbReference type="EnsemblBacteria" id="ABX37196">
        <property type="protein sequence ID" value="ABX37196"/>
        <property type="gene ID" value="Daci_4567"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_4567"/>
    <dbReference type="eggNOG" id="COG0583">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_039613_39_0_4"/>
    <dbReference type="OMA" id="MMNIMHP"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003700">
        <property type="term" value="F:DNA-binding transcription factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd08417">
        <property type="entry name" value="PBP2_Nitroaromatics_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005119">
        <property type="entry name" value="LysR_subst-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000847">
        <property type="entry name" value="Tscrpt_reg_HTH_LysR"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036390">
        <property type="entry name" value="WH_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037402">
        <property type="entry name" value="YidZ_PBP2"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00126">
        <property type="entry name" value="HTH_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03466">
        <property type="entry name" value="LysR_substrate"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46785">
        <property type="entry name" value="SSF46785"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50931">
        <property type="entry name" value="HTH_LYSR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HTH lysR-type" evidence="2">
        <location>
            <begin position="20"/>
            <end position="77"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00009437"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS50931"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ABX37196.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="332" mass="36904" checksum="64AE96A66913BD56" modified="2008-01-15" version="1">MNSIQHADGAPRAPVNLRSIDLNLLVIFEALVEERSVGKAAARLGITSSAVSHALRRLRTQFNDPLLLRTAEGMSPTPEAVRLARSFRKAFSEIESAIEVSKGFDPATARRNFHLRLSDYVGVLLLPQLCIHLRAVAPGISLSVQSFDGRQPSDRVEYEGVEIRLSVSRGRSVLSASRRLLDDQWMVLMRKDHPAAASPLTLEKYLEQGHLKVTGVGSSIVDELLAERGLARRVMFQVPTWLGMVPVIESTDLVAAMPAHWMHSVLSGSNCVARPMPLPELALSIDAVWHPRNDHDAGHKWFRELIHQIFQEAYSKSLLQQRLDRAGTRNNA</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="67" xmlns="http://uniprot.org/uniprot">
    <accession>A9C3A3</accession>
    <name>A9C3A3_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="8">Dihydroxyacetone kinase, L subunit</fullName>
            <ecNumber evidence="8">2.7.1.29</ecNumber>
        </submittedName>
    </protein>
    <gene>
        <name evidence="8" type="ordered locus">Daci_4585</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="9" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EC" id="2.7.1.29" evidence="8"/>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX37214.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012206384.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_4585"/>
    <dbReference type="PRIDE" id="A9C3A3"/>
    <dbReference type="EnsemblBacteria" id="ABX37214">
        <property type="protein sequence ID" value="ABX37214"/>
        <property type="gene ID" value="Daci_4585"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_4585"/>
    <dbReference type="eggNOG" id="COG1461">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="eggNOG" id="COG2376">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_017054_6_1_4"/>
    <dbReference type="OMA" id="TALNMNG"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004371">
        <property type="term" value="F:glycerone kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006071">
        <property type="term" value="P:glycerol metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016310">
        <property type="term" value="P:phosphorylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.25.40.340">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004006">
        <property type="entry name" value="DhaK_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012737">
        <property type="entry name" value="DhaK_L_YcgS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004007">
        <property type="entry name" value="DhaL_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036117">
        <property type="entry name" value="DhaL_dom_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02733">
        <property type="entry name" value="Dak1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02734">
        <property type="entry name" value="Dak2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM01120">
        <property type="entry name" value="Dak2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF101473">
        <property type="entry name" value="SSF101473"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR02365">
        <property type="entry name" value="dha_L_ycgS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51481">
        <property type="entry name" value="DHAK"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51480">
        <property type="entry name" value="DHAL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="3 8" id="KW-0418">Kinase</keyword>
    <keyword evidence="2" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1 8" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="DhaK" evidence="7">
        <location>
            <begin position="9"/>
            <end position="332"/>
        </location>
    </feature>
    <feature type="domain" description="DhaL" evidence="6">
        <location>
            <begin position="384"/>
            <end position="587"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="5">
        <location>
            <begin position="341"/>
            <end position="378"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="5">
        <location>
            <begin position="355"/>
            <end position="372"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022777"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="PROSITE" id="PS51480"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="PROSITE" id="PS51481"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="ABX37214.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="598" mass="62193" checksum="B9E5A856B0C9C168" modified="2008-01-15" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="74" xmlns="http://uniprot.org/uniprot">
    <accession>A9C3H5</accession>
    <name>A9C3H5_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="7">Ferredoxin</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="10" type="ordered locus">Daci_4657</name>
    </gene>
    <organism evidence="10 11">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="10 11" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="11">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="11" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="11">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="7">Ferredoxins are iron-sulfur proteins that transfer electrons in a wide variety of metabolic reactions.</text>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="1 7">
            <name>[3Fe-4S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:21137"/>
        </cofactor>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="2 7">
            <name>[4Fe-4S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:49883"/>
        </cofactor>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX37286.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012206456.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_4657"/>
    <dbReference type="PRIDE" id="A9C3H5"/>
    <dbReference type="EnsemblBacteria" id="ABX37286">
        <property type="protein sequence ID" value="ABX37286"/>
        <property type="gene ID" value="Daci_4657"/>
    </dbReference>
    <dbReference type="GeneID" id="60688808"/>
    <dbReference type="KEGG" id="dac:Daci_4657"/>
    <dbReference type="eggNOG" id="COG1146">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_139698_0_0_4"/>
    <dbReference type="OMA" id="DRMLYIH"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051538">
        <property type="term" value="F:3 iron, 4 sulfur cluster binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051539">
        <property type="term" value="F:4 iron, 4 sulfur cluster binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009055">
        <property type="term" value="F:electron transfer activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017896">
        <property type="entry name" value="4Fe4S_Fe-S-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017900">
        <property type="entry name" value="4Fe4S_Fe_S_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000813">
        <property type="entry name" value="7Fe_ferredoxin"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR022569">
        <property type="entry name" value="Fd_C"/>
    </dbReference>
    <dbReference type="Pfam" id="PF11953">
        <property type="entry name" value="DUF3470"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00037">
        <property type="entry name" value="Fer4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00354">
        <property type="entry name" value="7FE8SFRDOXIN"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00198">
        <property type="entry name" value="4FE4S_FER_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51379">
        <property type="entry name" value="4FE4S_FER_2"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="6 7" id="KW-0003">3Fe-4S</keyword>
    <keyword evidence="7" id="KW-0004">4Fe-4S</keyword>
    <keyword evidence="7" id="KW-0249">Electron transport</keyword>
    <keyword evidence="4 7" id="KW-0408">Iron</keyword>
    <keyword evidence="5 7" id="KW-0411">Iron-sulfur</keyword>
    <keyword evidence="3 7" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="11" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="7" id="KW-0677">Repeat</keyword>
    <keyword evidence="7" id="KW-0813">Transport</keyword>
    <feature type="domain" description="4Fe-4S ferredoxin-type" evidence="9">
        <location>
            <begin position="1"/>
            <end position="30"/>
        </location>
    </feature>
    <feature type="domain" description="4Fe-4S ferredoxin-type" evidence="9">
        <location>
            <begin position="31"/>
            <end position="60"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="8">
        <location>
            <begin position="87"/>
            <end position="109"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001927"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00001966"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023004"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023014"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023291"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="RuleBase" id="RU364098"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="9">
        <source>
            <dbReference type="PROSITE" id="PS51379"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="EMBL" id="ABX37286.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="109" mass="12132" checksum="7B82FEA69279D7F2" modified="2008-01-15" version="1">MTHVVTENCIKCKYTDCVDVCPVDCFREGPNFLVIDPDECIDCAVCIPECPANAIFAEEDVPADQLAFIKLNAELSLEKGWKSITKRKASLPDADDWNGKPGKLDQLER</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2021-06-02" version="38" xmlns="http://uniprot.org/uniprot">
    <accession>A9C3J2</accession>
    <name>A9C3J2_DELAS</name>
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        <submittedName>
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        </submittedName>
    </protein>
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    </gene>
    <organism evidence="1 2">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
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            <taxon>Comamonadaceae</taxon>
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        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="2" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX37303.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012206473.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_4674"/>
    <dbReference type="EnsemblBacteria" id="ABX37303">
        <property type="protein sequence ID" value="ABX37303"/>
        <property type="gene ID" value="Daci_4674"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_4674"/>
    <dbReference type="HOGENOM" id="CLU_815647_0_0_4"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ABX37303.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="338" mass="33433" checksum="C844EB9C1053CCCC" modified="2008-01-15" version="1">MTSIVPTPAAPTVPIYPALGSAAFNQEAYAYGTAMPSVSLRIWEIGRSSEINATASYEWAMASTDLRDQAQAAAGTSVAKAGEAAASAAASAGSATAASTSEGNAAGSATSASGSATAAAGSATGAAGFATAANTAKTGAEAARDAAQGFRDQAAVFATQQIKGSSTTSVTPGAGAKSFTIEASRSFVTGMYVVATSTSDPATSMSGYVQSYNLSTGALVIGVDMYAGSSAKADWVIGVAAPGAADSMTTQVLTASATAVPGVYYVLATAGITLTIPTNFSAGQAIGFGMSRGIATAYVDWLTNKVKGRTPGVMQLLSQNDSAVCRKVNETDGFMEAA</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="47" xmlns="http://uniprot.org/uniprot">
    <accession>A9C3J5</accession>
    <name>A9C3J5_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_4677</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX37306.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_4677"/>
    <dbReference type="PRIDE" id="A9C3J5"/>
    <dbReference type="EnsemblBacteria" id="ABX37306">
        <property type="protein sequence ID" value="ABX37306"/>
        <property type="gene ID" value="Daci_4677"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_4677"/>
    <dbReference type="HOGENOM" id="CLU_146680_0_0_4"/>
    <dbReference type="OMA" id="IDWLMEI"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="26"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="109"/>
            <end position="151"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="123"/>
            <end position="138"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX37306.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="151" mass="16851" checksum="4B8EBF675E202D75" modified="2008-01-15" version="1">MRTWAWLNAPLKPKNGKKTQPQDDEPRITRIEEFKAEGREPDVPDPGPAGYLLEVFFDLGPSLQSPMGETPIGYEQLVAWQSIHGVQLTPWEGKTLCDLSIAWMVAKDAAKDPAAPRPGSVDESPEQAEERRKRVSSGLGDMLRSFRRAPK</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="43" xmlns="http://uniprot.org/uniprot">
    <accession>A9BLS2</accession>
    <name>A9BLS2_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_4230</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX36861.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012206033.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_4230"/>
    <dbReference type="PRIDE" id="A9BLS2"/>
    <dbReference type="EnsemblBacteria" id="ABX36861">
        <property type="protein sequence ID" value="ABX36861"/>
        <property type="gene ID" value="Daci_4230"/>
    </dbReference>
    <dbReference type="GeneID" id="60688490"/>
    <dbReference type="KEGG" id="dac:Daci_4230"/>
    <dbReference type="eggNOG" id="ENOG5032731">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_098987_0_0_4"/>
    <dbReference type="OMA" id="FLSRFMV"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="7"/>
            <end position="30"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="90"/>
            <end position="108"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="120"/>
            <end position="140"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX36861.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="168" mass="18015" checksum="D788AE88A181094A" modified="2008-01-15" version="1">MKAIHTLFTVLHALIALLFSLAAVALLWIAGLKGWNAMAHGVDGESGLRIVEALGILASGVVALQIAQTITEEEVIREAHISGPTRVRRFLSRFLVVLVVALAVEALVAAFKTQEEPAHLLYPAALVSAVGVLLLGWGAFIHLNRSAEELEPEAMEEAKGEDHKVNKS</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="83" xmlns="http://uniprot.org/uniprot">
    <accession>A9BLX8</accession>
    <name>A9BLX8_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Transcriptional regulator, GntR family with aminotransferase domain</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Daci_4286</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="4" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">In the C-terminal section; belongs to the class-I pyridoxal-phosphate-dependent aminotransferase family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX36917.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012206089.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="PRIDE" id="A9BLX8"/>
    <dbReference type="EnsemblBacteria" id="ABX36917">
        <property type="protein sequence ID" value="ABX36917"/>
        <property type="gene ID" value="Daci_4286"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_4286"/>
    <dbReference type="eggNOG" id="COG1167">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_017584_0_0_4"/>
    <dbReference type="OMA" id="MPEQIMV"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003700">
        <property type="term" value="F:DNA-binding transcription factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030170">
        <property type="term" value="F:pyridoxal phosphate binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008483">
        <property type="term" value="F:transaminase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009058">
        <property type="term" value="P:biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd07377">
        <property type="entry name" value="WHTH_GntR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.640.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.1150.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004839">
        <property type="entry name" value="Aminotransferase_I/II"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015424">
        <property type="entry name" value="PyrdxlP-dep_Trfase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015421">
        <property type="entry name" value="PyrdxlP-dep_Trfase_major"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015422">
        <property type="entry name" value="PyrdxlP-dep_Trfase_small"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000524">
        <property type="entry name" value="Tscrpt_reg_HTH_GntR"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036390">
        <property type="entry name" value="WH_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00155">
        <property type="entry name" value="Aminotran_1_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00392">
        <property type="entry name" value="GntR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00345">
        <property type="entry name" value="HTH_GNTR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46785">
        <property type="entry name" value="SSF46785"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53383">
        <property type="entry name" value="SSF53383"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50949">
        <property type="entry name" value="HTH_GNTR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-0032">Aminotransferase</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="HTH gntR-type" evidence="2">
        <location>
            <begin position="8"/>
            <end position="76"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00005384"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS50949"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ABX36917.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="497" mass="52668" checksum="1927FF1C5EB261BB" modified="2008-01-15" version="1">MPTTNEPLPQYRRIAQALRQTLACGALRPGDRLISARSLAEREQVSLPTALEALRCLEAEGLIVARPRSGYFVRQATGGAALQASRPSSRPVPVTLSALARSLFSSPDTRLIPLGAALPDPAWLPTARLQRALQTAGRRLDAHGQTYSMPPGRADLRGQIAARAAQWGARFGPDDLVLTAGATQAVRLALRAVCKPGDVVAVERPAYFGSLLLLEDLGLKALEIATDPREGLLLEPLAEAIARHRPAAVLASPTVQNPLGASMPVERKQALVALLERAGIPLIEDDVYGDLAGDGQRPPACKAFDGSGNVLYCGSVSKTLAPGWRVGWIAAGRFHAQVLQVRLAGDWAGAPLLEAAVSEVLASGDYDRHLRRLKSRVQAGVQAVTARVEASFPPGTRVSAPRAGFLLWVELPRQVNALEVHRRALELGIGVSPGPLFSSRSDLPNHLRLNCANEPTPRLLGAVGQVGEICLGLVEGAAARQEAQVGQPTSSRAARAP</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="56" xmlns="http://uniprot.org/uniprot">
    <accession>A9BM18</accession>
    <name>A9BM18_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Na+/H+ antiporter subunit</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_4734</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX37363.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012206533.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_4734"/>
    <dbReference type="EnsemblBacteria" id="ABX37363">
        <property type="protein sequence ID" value="ABX37363"/>
        <property type="gene ID" value="Daci_4734"/>
    </dbReference>
    <dbReference type="GeneID" id="60688676"/>
    <dbReference type="KEGG" id="dac:Daci_4734"/>
    <dbReference type="eggNOG" id="COG1320">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_121334_1_0_4"/>
    <dbReference type="OMA" id="FMTVTTP"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005451">
        <property type="term" value="F:monovalent cation:proton antiporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0098662">
        <property type="term" value="P:inorganic cation transmembrane transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005133">
        <property type="entry name" value="PhaG_MnhG_YufB"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR34703">
        <property type="entry name" value="PTHR34703"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03334">
        <property type="entry name" value="PhaG_MnhG_YufB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="12"/>
            <end position="36"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="48"/>
            <end position="67"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="73"/>
            <end position="94"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX37363.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="127" mass="13828" checksum="D89EF490F27DE54A" modified="2008-01-15" version="1">MTPETTLPLWCQILVAALALGGAIIAFLGSMGLWRLGSYFERVHAPSIIATMGCWLIMHATWIYFSVSGQSLAVHALLIAVFISVTVPITTIFLMRAALFRARRAGQDVPPPLSTVVRNEPAEHPDV</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="51" xmlns="http://uniprot.org/uniprot">
    <accession>A9BMD0</accession>
    <name>A9BMD0_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">ATPase associated with various cellular activities AAA_5</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_4846</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX37475.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012206645.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_4846"/>
    <dbReference type="PRIDE" id="A9BMD0"/>
    <dbReference type="EnsemblBacteria" id="ABX37475">
        <property type="protein sequence ID" value="ABX37475"/>
        <property type="gene ID" value="Daci_4846"/>
    </dbReference>
    <dbReference type="GeneID" id="60689187"/>
    <dbReference type="KEGG" id="dac:Daci_4846"/>
    <dbReference type="eggNOG" id="COG0714">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_065561_0_0_4"/>
    <dbReference type="OMA" id="AIRYGWN"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016887">
        <property type="term" value="F:ATP hydrolysis activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011704">
        <property type="entry name" value="ATPase_dyneun-rel_AAA"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07728">
        <property type="entry name" value="AAA_5"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="AAA_5" evidence="1">
        <location>
            <begin position="78"/>
            <end position="216"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF07728"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX37475.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="360" mass="39294" checksum="E435CB6DEE7EC43F" modified="2008-01-15" version="1">MSQVLRQHAEQQFAEELEALRKVDDRPRPPNWKLSPWAVLQYLMGGKLGNGFEVSPKYIGNPRLMEIAVSTLATDRALLLYGVPGTAKSWVSEHLSAAVSGDSTMLVQGTAGTSEEQLRYGWNYAQLLAHGPSEKALIPSPLVNAMKLGKIARIEELTRIPADVQDTLITVLSEKTLPVPELGSEVQAVQGFSVIATANNRDKGVNELSSALKRRFNTVILPVPASQDEEVQIVTKRVAEQGRALALPAEPPALQEVRRVVQIFRELRNGQTEDGKTVRVKSPSSTLSTAEAISVINSGMALAGHFGDGVLRAGDVASGLLGAVIKDPVQDSVVWKEYLETVVKERSDWKDLYRACREQL</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="85" xmlns="http://uniprot.org/uniprot">
    <accession>A9BMF9</accession>
    <name>A9BMF9_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="5 6">Glutamine-dependent NAD(+) synthetase</fullName>
            <ecNumber evidence="5 6">6.3.5.1</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="5 6">NAD(+) synthase [glutamine-hydrolyzing]</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="5" type="primary">nadE</name>
        <name evidence="9" type="ordered locus">Daci_4875</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="9 10" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="10" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="5">Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="5 6">
            <text>ATP + deamido-NAD(+) + H2O + L-glutamine = AMP + diphosphate + H(+) + L-glutamate + NAD(+)</text>
            <dbReference type="Rhea" id="RHEA:24384"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:29985"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:33019"/>
            <dbReference type="ChEBI" id="CHEBI:57540"/>
            <dbReference type="ChEBI" id="CHEBI:58359"/>
            <dbReference type="ChEBI" id="CHEBI:58437"/>
            <dbReference type="ChEBI" id="CHEBI:456215"/>
            <dbReference type="EC" id="6.3.5.1"/>
        </reaction>
    </comment>
    <comment type="pathway">
        <text evidence="1 5 6">Cofactor biosynthesis; NAD(+) biosynthesis; NAD(+) from deamido-NAD(+) (L-Gln route): step 1/1.</text>
    </comment>
    <comment type="similarity">
        <text evidence="7">Belongs to the NAD synthetase family.</text>
    </comment>
    <comment type="similarity">
        <text evidence="2 5 6">In the C-terminal section; belongs to the NAD synthetase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="5">Lacks conserved residue(s) required for the propagation of feature annotation.</text>
    </comment>
    <dbReference type="EC" id="6.3.5.1" evidence="5 6"/>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX37504.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_4875"/>
    <dbReference type="PRIDE" id="A9BMF9"/>
    <dbReference type="EnsemblBacteria" id="ABX37504">
        <property type="protein sequence ID" value="ABX37504"/>
        <property type="gene ID" value="Daci_4875"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_4875"/>
    <dbReference type="eggNOG" id="COG0171">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="eggNOG" id="COG0388">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_022313_2_0_4"/>
    <dbReference type="OMA" id="VLMPSPY"/>
    <dbReference type="UniPathway" id="UPA00253">
        <property type="reaction ID" value="UER00334"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004359">
        <property type="term" value="F:glutaminase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003952">
        <property type="term" value="F:NAD+ synthase (glutamine-hydrolyzing) activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008795">
        <property type="term" value="F:NAD+ synthase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009435">
        <property type="term" value="P:NAD biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd00553">
        <property type="entry name" value="NAD_synthase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.620">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.60.110.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_02090">
        <property type="entry name" value="NadE_glutamine_dep"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003010">
        <property type="entry name" value="C-N_Hydrolase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036526">
        <property type="entry name" value="C-N_Hydrolase_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014445">
        <property type="entry name" value="Gln-dep_NAD_synthase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR022310">
        <property type="entry name" value="NAD/GMP_synthase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003694">
        <property type="entry name" value="NAD_synthase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014729">
        <property type="entry name" value="Rossmann-like_a/b/a_fold"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR23090">
        <property type="entry name" value="PTHR23090"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00795">
        <property type="entry name" value="CN_hydrolase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02540">
        <property type="entry name" value="NAD_synthase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF006630">
        <property type="entry name" value="NADS_GAT"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56317">
        <property type="entry name" value="SSF56317"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00552">
        <property type="entry name" value="nadE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50263">
        <property type="entry name" value="CN_HYDROLASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4 5 6" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="5 6 7" id="KW-0436">Ligase</keyword>
    <keyword evidence="5 6 7" id="KW-0520">NAD</keyword>
    <keyword evidence="3 5 6" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="CN hydrolase" evidence="8">
        <location>
            <begin position="13"/>
            <end position="258"/>
        </location>
    </feature>
    <feature type="active site" description="Proton acceptor; for glutaminase activity" evidence="5">
        <location>
            <position position="53"/>
        </location>
    </feature>
    <feature type="active site" description="For glutaminase activity" evidence="5">
        <location>
            <position position="126"/>
        </location>
    </feature>
    <feature type="active site" description="Nucleophile; for glutaminase activity" evidence="5">
        <location>
            <position position="162"/>
        </location>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <position position="132"/>
        </location>
        <ligand>
            <name>L-glutamine</name>
            <dbReference type="ChEBI" id="CHEBI:58359"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <position position="188"/>
        </location>
        <ligand>
            <name>L-glutamine</name>
            <dbReference type="ChEBI" id="CHEBI:58359"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <position position="194"/>
        </location>
        <ligand>
            <name>L-glutamine</name>
            <dbReference type="ChEBI" id="CHEBI:58359"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <begin position="302"/>
            <end position="309"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <position position="385"/>
        </location>
        <ligand>
            <name>deamido-NAD(+)</name>
            <dbReference type="ChEBI" id="CHEBI:58437"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <position position="409"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <position position="414"/>
        </location>
        <ligand>
            <name>deamido-NAD(+)</name>
            <dbReference type="ChEBI" id="CHEBI:58437"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <position position="530"/>
        </location>
        <ligand>
            <name>deamido-NAD(+)</name>
            <dbReference type="ChEBI" id="CHEBI:58437"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00005188"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00007145"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_02090"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="PIRNR" id="PIRNR006630"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="RuleBase" id="RU003811"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="PROSITE" id="PS50263"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="ABX37504.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="559" mass="60133" checksum="964B8801F412532C" modified="2008-01-15" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="71" xmlns="http://uniprot.org/uniprot">
    <accession>A9BMG2</accession>
    <name>A9BMG2_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="7">Methyl-accepting chemotaxis sensory transducer</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ordered locus">Daci_4878</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="8" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the methyl-accepting chemotaxis (MCP) protein family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX37507.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012206677.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_4878"/>
    <dbReference type="PRIDE" id="A9BMG2"/>
    <dbReference type="EnsemblBacteria" id="ABX37507">
        <property type="protein sequence ID" value="ABX37507"/>
        <property type="gene ID" value="Daci_4878"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_4878"/>
    <dbReference type="eggNOG" id="COG0840">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_000445_107_16_4"/>
    <dbReference type="OMA" id="GAMRSEY"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004888">
        <property type="term" value="F:transmembrane signaling receptor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006935">
        <property type="term" value="P:chemotaxis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0007165">
        <property type="term" value="P:signal transduction"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004090">
        <property type="entry name" value="Chemotax_Me-accpt_rcpt"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003660">
        <property type="entry name" value="HAMP_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR024478">
        <property type="entry name" value="HlyB_4HB_MCP"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004089">
        <property type="entry name" value="MCPsignal_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12729">
        <property type="entry name" value="4HB_MCP_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00672">
        <property type="entry name" value="HAMP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00015">
        <property type="entry name" value="MCPsignal"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00260">
        <property type="entry name" value="CHEMTRNSDUCR"/>
    </dbReference>
    <dbReference type="SMART" id="SM00304">
        <property type="entry name" value="HAMP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00283">
        <property type="entry name" value="MA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50111">
        <property type="entry name" value="CHEMOTAXIS_TRANSDUC_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50885">
        <property type="entry name" value="HAMP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-0472">Membrane</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0807">Transducer</keyword>
    <keyword evidence="4" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="4" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="4">
        <location>
            <begin position="12"/>
            <end position="34"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="4">
        <location>
            <begin position="200"/>
            <end position="220"/>
        </location>
    </feature>
    <feature type="domain" description="HAMP" evidence="6">
        <location>
            <begin position="222"/>
            <end position="274"/>
        </location>
    </feature>
    <feature type="domain" description="Methyl-accepting transducer" evidence="5">
        <location>
            <begin position="279"/>
            <end position="508"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="3">
        <location>
            <begin position="564"/>
            <end position="589"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00029447"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00284"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="PROSITE" id="PS50111"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="PROSITE" id="PS50885"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="ABX37507.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="589" mass="61964" checksum="8A94E44897C2841A" modified="2008-01-15" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="51" xmlns="http://uniprot.org/uniprot">
    <accession>A9BMH4</accession>
    <name>A9BMH4_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ordered locus">Daci_4890</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="5" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Periplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the UPF0065 (bug) family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX37519.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_4890"/>
    <dbReference type="PRIDE" id="A9BMH4"/>
    <dbReference type="EnsemblBacteria" id="ABX37519">
        <property type="protein sequence ID" value="ABX37519"/>
        <property type="gene ID" value="Daci_4890"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_4890"/>
    <dbReference type="eggNOG" id="COG3181">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_045683_0_2_4"/>
    <dbReference type="OMA" id="DVEIGAW"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0042597">
        <property type="term" value="C:periplasmic space"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.190.150">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005064">
        <property type="entry name" value="BUG"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR042100">
        <property type="entry name" value="Bug_dom1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR42928">
        <property type="entry name" value="PTHR42928"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03401">
        <property type="entry name" value="TctC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF017082">
        <property type="entry name" value="YflP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="3">
        <location>
            <begin position="1"/>
            <end position="30"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5002732328" evidence="3">
        <location>
            <begin position="31"/>
            <end position="330"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004418"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00006987"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="ABX37519.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="330" mass="34279" checksum="A69D2D122A809E88" modified="2008-01-15" version="1">MKALSMKAKRRTLALGAAMALALLAGPAQAQTYPHKPVTIVVAYPAGGDTDALARLLGEKLSARIGQSVLVDNRAGASGTIGSSFVAKAPADGYTLLLAPNTFAMAQLVLKLGTGHGYDVLNGFTPVIEVGSTSLFLVAGPGAGVRSFKEAISSSQGRSLGYATPGNGSPMHFLGEMVRRATGARFEAIPYKGVAPAVTDVVGGHVPFTYSTLGSIAPYLPGGKLVALAVADAQRSPLAPDVPTLAELGYKDVELTAWYGLFGPRNMPTEVVKLLNTQLNEILRMPDVVARMATLGTVPVGGPPQRLGKTNAGDFERFGRLVKELGIQPD</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-01-19" version="51" xmlns="http://uniprot.org/uniprot">
    <accession>A9BMI4</accession>
    <name>A9BMI4_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Membrane protein-like protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ordered locus">Daci_4900</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="6" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX37529.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012206699.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_4900"/>
    <dbReference type="EnsemblBacteria" id="ABX37529">
        <property type="protein sequence ID" value="ABX37529"/>
        <property type="gene ID" value="Daci_4900"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_4900"/>
    <dbReference type="eggNOG" id="COG3686">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_110778_2_1_4"/>
    <dbReference type="OMA" id="YWCVLIA"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.120.550">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023352">
        <property type="entry name" value="MAPEG-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001129">
        <property type="entry name" value="Membr-assoc_MAPEG"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01124">
        <property type="entry name" value="MAPEG"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF161084">
        <property type="entry name" value="SSF161084"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3 4" id="KW-0472">Membrane</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1 4" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="2 4" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="4">
        <location>
            <begin position="14"/>
            <end position="33"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="4">
        <location>
            <begin position="74"/>
            <end position="91"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="4">
        <location>
            <begin position="97"/>
            <end position="117"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="4">
        <location>
            <begin position="124"/>
            <end position="142"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="ABX37529.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="143" mass="15514" checksum="2589EA46143733F5" modified="2008-01-15" version="1">MPTSVILPPGGFSIAHWCLLVAALLPLACAYIAKAPGMKHRPGQRGFDNHEPRAWLAQQTGYQARANAAQANSFECLPFFIGALLVAWQLGAPSARVDGLAVAFVVLRIAYIAFYVTDRATLRSLAWALALVVNLLLFFAGYR</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="81" xmlns="http://uniprot.org/uniprot">
    <accession>A9BMK6</accession>
    <name>A9BMK6_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(S)</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ordered locus">Daci_4922</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="5" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX37551.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012206721.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_4922"/>
    <dbReference type="PRIDE" id="A9BMK6"/>
    <dbReference type="EnsemblBacteria" id="ABX37551">
        <property type="protein sequence ID" value="ABX37551"/>
        <property type="gene ID" value="Daci_4922"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_4922"/>
    <dbReference type="eggNOG" id="COG5001">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_000445_70_20_4"/>
    <dbReference type="OMA" id="TEMGCNH"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006355">
        <property type="term" value="P:regulation of transcription, DNA-templated"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd01948">
        <property type="entry name" value="EAL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="CDD" id="cd01949">
        <property type="entry name" value="GGDEF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="CDD" id="cd00130">
        <property type="entry name" value="PAS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.20.20.450">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.70.270">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012226">
        <property type="entry name" value="Diguanyl_cyclase/Pdiesterase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001633">
        <property type="entry name" value="EAL_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035919">
        <property type="entry name" value="EAL_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000160">
        <property type="entry name" value="GGDEF_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029787">
        <property type="entry name" value="Nucleotide_cyclase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001610">
        <property type="entry name" value="PAC"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000014">
        <property type="entry name" value="PAS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000700">
        <property type="entry name" value="PAS-assoc_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035965">
        <property type="entry name" value="PAS-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013767">
        <property type="entry name" value="PAS_fold"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043128">
        <property type="entry name" value="Rev_trsase/Diguanyl_cyclase"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00563">
        <property type="entry name" value="EAL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00990">
        <property type="entry name" value="GGDEF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00989">
        <property type="entry name" value="PAS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF005925">
        <property type="entry name" value="Dos"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SMART" id="SM00052">
        <property type="entry name" value="EAL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00267">
        <property type="entry name" value="GGDEF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00086">
        <property type="entry name" value="PAC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF141868">
        <property type="entry name" value="SSF141868"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55073">
        <property type="entry name" value="SSF55073"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55785">
        <property type="entry name" value="SSF55785"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00254">
        <property type="entry name" value="GGDEF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00229">
        <property type="entry name" value="sensory_box"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50883">
        <property type="entry name" value="EAL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50887">
        <property type="entry name" value="GGDEF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50113">
        <property type="entry name" value="PAC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="PAC" evidence="1">
        <location>
            <begin position="100"/>
            <end position="151"/>
        </location>
    </feature>
    <feature type="domain" description="GGDEF" evidence="3">
        <location>
            <begin position="222"/>
            <end position="354"/>
        </location>
    </feature>
    <feature type="domain" description="EAL" evidence="2">
        <location>
            <begin position="363"/>
            <end position="617"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS50113"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS50883"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="PROSITE" id="PS50887"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="ABX37551.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="617" mass="69418" checksum="260AF656CEFAF67F" modified="2008-01-15" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="87" xmlns="http://uniprot.org/uniprot">
    <accession>A9BMP7</accession>
    <name>A9BMP7_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Transcriptional regulator, AraC family with acetamidase/formamidase activity</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Daci_4963</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="4" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX37592.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012206762.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_4963"/>
    <dbReference type="PRIDE" id="A9BMP7"/>
    <dbReference type="EnsemblBacteria" id="ABX37592">
        <property type="protein sequence ID" value="ABX37592"/>
        <property type="gene ID" value="Daci_4963"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_4963"/>
    <dbReference type="eggNOG" id="COG2207">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="eggNOG" id="COG2421">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_360519_0_0_4"/>
    <dbReference type="OMA" id="RWGFNDP"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003700">
        <property type="term" value="F:DNA-binding transcription factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016811">
        <property type="term" value="F:hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043565">
        <property type="term" value="F:sequence-specific DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035418">
        <property type="entry name" value="AraC-bd_2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004304">
        <property type="entry name" value="FmdA_AmdA"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009057">
        <property type="entry name" value="Homeobox-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018060">
        <property type="entry name" value="HTH_AraC"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR31891">
        <property type="entry name" value="PTHR31891"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF14525">
        <property type="entry name" value="AraC_binding_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03069">
        <property type="entry name" value="FmdA_AmdA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12833">
        <property type="entry name" value="HTH_18"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00342">
        <property type="entry name" value="HTH_ARAC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46689">
        <property type="entry name" value="SSF46689"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01124">
        <property type="entry name" value="HTH_ARAC_FAMILY_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HTH araC/xylS-type" evidence="2">
        <location>
            <begin position="217"/>
            <end position="318"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="317"/>
            <end position="345"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS01124"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ABX37592.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="810" mass="87826" checksum="2749D4B6F3FB61C3" modified="2008-01-15" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="63" xmlns="http://uniprot.org/uniprot">
    <accession>A9BMX3</accession>
    <name>A9BMX3_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="3">AMP-dependent synthetase and ligase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Daci_5039</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="4" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX37668.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012206838.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_5039"/>
    <dbReference type="PRIDE" id="A9BMX3"/>
    <dbReference type="EnsemblBacteria" id="ABX37668">
        <property type="protein sequence ID" value="ABX37668"/>
        <property type="gene ID" value="Daci_5039"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_5039"/>
    <dbReference type="eggNOG" id="COG0318">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_000022_59_5_4"/>
    <dbReference type="OMA" id="YGPGTFC"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016874">
        <property type="term" value="F:ligase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.300.30">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.12780">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025110">
        <property type="entry name" value="AMP-bd_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045851">
        <property type="entry name" value="AMP-bd_C_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020845">
        <property type="entry name" value="AMP-binding_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000873">
        <property type="entry name" value="AMP-dep_Synth/Lig"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR042099">
        <property type="entry name" value="ANL_N_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00501">
        <property type="entry name" value="AMP-binding"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13193">
        <property type="entry name" value="AMP-binding_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00455">
        <property type="entry name" value="AMP_BINDING"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-0436">Ligase</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="AMP-binding" evidence="1">
        <location>
            <begin position="26"/>
            <end position="447"/>
        </location>
    </feature>
    <feature type="domain" description="AMP-binding_C" evidence="2">
        <location>
            <begin position="456"/>
            <end position="530"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF00501"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF13193"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ABX37668.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="548" mass="59373" checksum="961593C646D370CC" modified="2008-01-15" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="56" xmlns="http://uniprot.org/uniprot">
    <accession>A9BN53</accession>
    <name>A9BN53_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="8">Auxin Efflux Carrier</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="8" type="ordered locus">Daci_5119</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="9" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="2">Cell membrane</location>
            <topology evidence="2">Multi-pass membrane protein</topology>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="3">Belongs to the auxin efflux carrier (TC 2.A.69) family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX37748.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_5119"/>
    <dbReference type="PRIDE" id="A9BN53"/>
    <dbReference type="EnsemblBacteria" id="ABX37748">
        <property type="protein sequence ID" value="ABX37748"/>
        <property type="gene ID" value="Daci_5119"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_5119"/>
    <dbReference type="eggNOG" id="COG0679">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_056175_3_1_4"/>
    <dbReference type="OMA" id="TTFFWTL"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0055085">
        <property type="term" value="P:transmembrane transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.1530.20">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004776">
        <property type="entry name" value="Mem_trans"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038770">
        <property type="entry name" value="Na+/solute_symporter_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03547">
        <property type="entry name" value="Mem_trans"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="6 7" id="KW-0472">Membrane</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4 7" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="5 7" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="63"/>
            <end position="81"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="93"/>
            <end position="112"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="124"/>
            <end position="142"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="186"/>
            <end position="207"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="219"/>
            <end position="237"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="257"/>
            <end position="286"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="293"/>
            <end position="317"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="337"/>
            <end position="360"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00004651"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00010145"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="ABX37748.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="362" mass="38014" checksum="6C9721ABABD4BD01" modified="2008-01-15" version="1">MTVVRTCAFGSAVWTPAMLRPGARLSQFVAALISRCLPLASRHGFSGDAATAGLRLCSAPVNYAVLLFPDFSLIVLGYVLCRFTQLNRTVWQAVEALVYYLLFPVLLFHSIVKSPVDWGATSHLLAAGVCAALVGIGLAYSLPWWPGLRGRIDTREHAGAVQVAFRFNSFIGLALASRLAGPEGLLFISVLIGVSVPLCNIAAVWPMARGSNQHFLGQLVRNPLIVGTLSGLVFSALGLKLPALIEPSISRIGAASIALGLMSAGAGMQFGALAAGKLLAVCLLAVRHLVQPLIAYAMVRAFGLSGAQALILMAFSALPTASSCYVLAARMGYNGSYVAGLVTLSTLLGVLSLPFALSLLQY</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2021-06-02" version="48" xmlns="http://uniprot.org/uniprot">
    <accession>A9BNN5</accession>
    <name>A9BNN5_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_5301</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX37930.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012207099.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_5301"/>
    <dbReference type="EnsemblBacteria" id="ABX37930">
        <property type="protein sequence ID" value="ABX37930"/>
        <property type="gene ID" value="Daci_5301"/>
    </dbReference>
    <dbReference type="GeneID" id="60689646"/>
    <dbReference type="KEGG" id="dac:Daci_5301"/>
    <dbReference type="eggNOG" id="COG3247">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_091585_5_1_4"/>
    <dbReference type="OMA" id="GIGWLFR"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005325">
        <property type="entry name" value="DUF308_memb"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03729">
        <property type="entry name" value="DUF308"/>
        <property type="match status" value="3"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="12"/>
            <end position="33"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="39"/>
            <end position="59"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="71"/>
            <end position="91"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="97"/>
            <end position="117"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="129"/>
            <end position="147"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="153"/>
            <end position="176"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX37930.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="186" mass="20010" checksum="00B240AAC90D5FB7" modified="2008-01-15" version="1">MSPNPLSTILHRTWWVLLLRGLVAIAFGVLTWAQPAVSLAALVLTFGAFTFVDGLLGVYSAIQGRDQMRHWWVLLLWGLAGVVVGVLTVVAPGVTALVMTLYIGAWALVTGLLQIVAAVRLRKEITGEWLLILGGVLSVLFGAFVLAQPGAGMMAMLWVLATYAVVFGVLMVLLSFKLKKGIRHSS</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2021-06-02" version="57" xmlns="http://uniprot.org/uniprot">
    <accession>A9BNN6</accession>
    <name>A9BNN6_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Endonuclease/exonuclease/phosphatase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Daci_5302</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="4" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX37931.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012207100.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_5302"/>
    <dbReference type="EnsemblBacteria" id="ABX37931">
        <property type="protein sequence ID" value="ABX37931"/>
        <property type="gene ID" value="Daci_5302"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_5302"/>
    <dbReference type="eggNOG" id="COG3568">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_064248_0_0_4"/>
    <dbReference type="OMA" id="IQWGRGA"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004519">
        <property type="term" value="F:endonuclease activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004527">
        <property type="term" value="F:exonuclease activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.60.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036691">
        <property type="entry name" value="Endo/exonu/phosph_ase_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005135">
        <property type="entry name" value="Endo/exonuclease/phosphatase"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03372">
        <property type="entry name" value="Exo_endo_phos"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56219">
        <property type="entry name" value="SSF56219"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-0255">Endonuclease</keyword>
    <keyword evidence="3" id="KW-0269">Exonuclease</keyword>
    <keyword evidence="3" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="3" id="KW-0540">Nuclease</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Endo/exonuclease/phosphatase" evidence="2">
        <location>
            <begin position="5"/>
            <end position="281"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="165"/>
            <end position="186"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF03372"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ABX37931.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="289" mass="31927" checksum="386628CE51B3D079" modified="2008-01-15" version="1">MMQILTWNTQWCLGLDGRMDPERIVAHALSMADIDVLCLQEIAVHYPGLQGAPGDQVEQVRAALPEGWKVFFGAAVDEFTAVGRQRFGNLVATRLPVLQLAHHRLPYPHDGGVRSMPRCCTAATVMDAALGPVRVMSTHLEYFSRRQRMAQALALRSLQIEALGQAEAPPQPASDGSPQQTKPHTPHAVLCGDFNFEPHEDEYAGLSRPWAAGEEGALTAGQWHNSWSVLHPDQPQPPTFRLFDRQWGPEPGACDFAWVSDSLRGHVRGWAVDSDTRLSDHQPVLLQLA</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-05-25" version="78" xmlns="http://uniprot.org/uniprot">
    <accession>A9BNN9</accession>
    <name>A9BNN9_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="6">Binding-protein-dependent transport systems inner membrane component</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ordered locus">Daci_5305</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="7" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="4">Cell membrane</location>
            <topology evidence="4">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="4">Belongs to the binding-protein-dependent transport system permease family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX37934.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012207103.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_5305"/>
    <dbReference type="EnsemblBacteria" id="ABX37934">
        <property type="protein sequence ID" value="ABX37934"/>
        <property type="gene ID" value="Daci_5305"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_5305"/>
    <dbReference type="eggNOG" id="COG1175">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_016047_0_2_4"/>
    <dbReference type="OMA" id="YKIVYFF"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0055085">
        <property type="term" value="P:transmembrane transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd06261">
        <property type="entry name" value="TM_PBP2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.3720.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000515">
        <property type="entry name" value="MetI-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035906">
        <property type="entry name" value="MetI-like_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00528">
        <property type="entry name" value="BPD_transp_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF161098">
        <property type="entry name" value="SSF161098"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50928">
        <property type="entry name" value="ABC_TM1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3 4" id="KW-0472">Membrane</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1 4" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="2 4" id="KW-1133">Transmembrane helix</keyword>
    <keyword evidence="4" id="KW-0813">Transport</keyword>
    <feature type="transmembrane region" description="Helical" evidence="4">
        <location>
            <begin position="15"/>
            <end position="34"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="4">
        <location>
            <begin position="79"/>
            <end position="100"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="4">
        <location>
            <begin position="112"/>
            <end position="132"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="4">
        <location>
            <begin position="160"/>
            <end position="183"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="4">
        <location>
            <begin position="212"/>
            <end position="231"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="4">
        <location>
            <begin position="268"/>
            <end position="291"/>
        </location>
    </feature>
    <feature type="domain" description="ABC transmembrane type-1" evidence="5">
        <location>
            <begin position="75"/>
            <end position="287"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="RuleBase" id="RU363032"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="PROSITE" id="PS50928"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="ABX37934.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="298" mass="33046" checksum="D3562FE3DB1936A7" modified="2008-01-15" version="1">MSSAPASLVRGRQAVHAWLMLLPALVLLVAFTHWPAVATLIDSLHATPRGGQPGSWVGLENYAVMVDDPVFWQAVRNNLWFAAATIPLSMALALAMALWVNERLAGRAFVRMAYFTPTVLPMIAVANIWLFFYTPQYGLLEQLRGALGLPAHNWLGDPSTALACVTVVAVWKEAGFFMIFYLAALQTLNPSLREAAAIEGASRWYFLRRVQWPLLMPTTLFVLVNAVINAFRLVDHLFILTRGGPDNASTLLLYHLYEVGFKFWDTGYAAAITVVLVAVLAAVALLQFFVLDKKVHYQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="92" xmlns="http://uniprot.org/uniprot">
    <accession>A9BNS7</accession>
    <name>A9BNS7_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="7 13 15">tRNA (guanine-N(1)-)-methyltransferase</fullName>
            <ecNumber evidence="6 13 15">2.1.1.228</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="13">M1G-methyltransferase</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="13">tRNA [GM37] methyltransferase</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="13" type="primary">trmD</name>
        <name evidence="17" type="ordered locus">Daci_5343</name>
    </gene>
    <organism evidence="17 18">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="17 18" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="18">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="18" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="18">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="2 13 15">Specifically methylates guanosine-37 in various tRNAs.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1 13 15">
            <text>guanosine(37) in tRNA + S-adenosyl-L-methionine = H(+) + N(1)-methylguanosine(37) in tRNA + S-adenosyl-L-homocysteine</text>
            <dbReference type="Rhea" id="RHEA:36899"/>
            <dbReference type="Rhea" id="RHEA-COMP:10145"/>
            <dbReference type="Rhea" id="RHEA-COMP:10147"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:57856"/>
            <dbReference type="ChEBI" id="CHEBI:59789"/>
            <dbReference type="ChEBI" id="CHEBI:73542"/>
            <dbReference type="ChEBI" id="CHEBI:74269"/>
            <dbReference type="EC" id="2.1.1.228"/>
        </reaction>
    </comment>
    <comment type="subunit">
        <text evidence="5 13 15">Homodimer.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="3 13 15">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="4 13 15">Belongs to the RNA methyltransferase TrmD family.</text>
    </comment>
    <dbReference type="EC" id="2.1.1.228" evidence="6 13 15"/>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX37972.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012207141.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_5343"/>
    <dbReference type="PRIDE" id="A9BNS7"/>
    <dbReference type="EnsemblBacteria" id="ABX37972">
        <property type="protein sequence ID" value="ABX37972"/>
        <property type="gene ID" value="Daci_5343"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_5343"/>
    <dbReference type="eggNOG" id="COG0336">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_047363_0_1_4"/>
    <dbReference type="OMA" id="ILCGHYK"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0052906">
        <property type="term" value="F:tRNA (guanine(37)-N(1))-methyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="CDD" id="cd18080">
        <property type="entry name" value="TrmD-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.1270.20">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.1280.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00605">
        <property type="entry name" value="TrmD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029028">
        <property type="entry name" value="Alpha/beta_knot_MTases"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002649">
        <property type="entry name" value="tRNA_m1G_MeTrfase_bac"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023148">
        <property type="entry name" value="tRNA_m1G_MeTrfase_C_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029026">
        <property type="entry name" value="tRNA_m1G_MTases_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016009">
        <property type="entry name" value="tRNA_MeTrfase_TRMD/TRM10"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46417">
        <property type="entry name" value="PTHR46417"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01746">
        <property type="entry name" value="tRNA_m1G_MT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF000386">
        <property type="entry name" value="tRNA_mtase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF75217">
        <property type="entry name" value="SSF75217"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00088">
        <property type="entry name" value="trmD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="8 13 15" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="9 13 15" id="KW-0489">Methyltransferase</keyword>
    <keyword evidence="18" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="11 13 14" id="KW-0949">S-adenosyl-L-methionine</keyword>
    <keyword evidence="10 13 15" id="KW-0808">Transferase</keyword>
    <keyword evidence="12 13 15" id="KW-0819">tRNA processing</keyword>
    <feature type="domain" description="tRNA_m1G_MT" evidence="16">
        <location>
            <begin position="24"/>
            <end position="229"/>
        </location>
    </feature>
    <feature type="region of interest" description="S-adenosyl-L-methionine binding" evidence="13 14">
        <location>
            <begin position="138"/>
            <end position="143"/>
        </location>
    </feature>
    <feature type="binding site" evidence="13 14">
        <location>
            <position position="118"/>
        </location>
        <ligand>
            <name>S-adenosyl-L-methionine</name>
            <dbReference type="ChEBI" id="CHEBI:59789"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001189"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00002634"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00004496"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00007630"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00011738"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00012807"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00014679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00022490"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00022603"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="ARBA" id="ARBA00022691"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="12">
        <source>
            <dbReference type="ARBA" id="ARBA00022694"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="13">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00605"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="14">
        <source>
            <dbReference type="PIRSR" id="PIRSR000386-1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="15">
        <source>
            <dbReference type="RuleBase" id="RU003464"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="16">
        <source>
            <dbReference type="Pfam" id="PF01746"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="17">
        <source>
            <dbReference type="EMBL" id="ABX37972.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="18">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="256" mass="28373" checksum="8C86E83029EEA99E" modified="2008-01-15" version="1">MRFDIITLFPELFTPFLESGVTRRAYASGQVGVHLWNPRDHAQGNYRRVDDRPFGGGPGMVMMAEPLQRCLEAARQARREAGEPEPAPVVLFSPIGTTLRHAVVAEWAQGQGAILLCGRYEGLDQRFIDTHVTHQLSLGDFVLSGGEIAAMALLDAVARLQPGVLNDEGSFQQDSFNPALDGLLDCPHYTRPEVWEGREVPAPLLSGHHAQIERWRRDQRLSITARHRPELIEQARAQGLLNAKDEGFLAKNVSGL</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="67" xmlns="http://uniprot.org/uniprot">
    <accession>A9BP76</accession>
    <name>A9BP76_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="5">Cell division protein ZapD</fullName>
        </recommendedName>
        <alternativeName>
            <fullName evidence="5">Z ring-associated protein D</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="5" type="primary">zapD</name>
        <name evidence="6" type="ordered locus">Daci_5492</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="7" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="5">Cell division factor that enhances FtsZ-ring assembly. Directly interacts with FtsZ and promotes bundling of FtsZ protofilaments, with a reduction in FtsZ GTPase activity.</text>
    </comment>
    <comment type="subunit">
        <text evidence="5">Interacts with FtsZ.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="5">Cytoplasm</location>
        </subcellularLocation>
        <text evidence="5">Localizes to mid-cell in an FtsZ-dependent manner.</text>
    </comment>
    <comment type="similarity">
        <text evidence="5">Belongs to the ZapD family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX38121.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012207290.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_5492"/>
    <dbReference type="PRIDE" id="A9BP76"/>
    <dbReference type="EnsemblBacteria" id="ABX38121">
        <property type="protein sequence ID" value="ABX38121"/>
        <property type="gene ID" value="Daci_5492"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_5492"/>
    <dbReference type="eggNOG" id="COG4582">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_076303_0_1_4"/>
    <dbReference type="OMA" id="LPAYYAW"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000917">
        <property type="term" value="P:division septum assembly"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043093">
        <property type="term" value="P:FtsZ-dependent cytokinesis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.440.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01092">
        <property type="entry name" value="ZapD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009777">
        <property type="entry name" value="ZapD"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027462">
        <property type="entry name" value="ZapD_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036268">
        <property type="entry name" value="ZapD_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR39455">
        <property type="entry name" value="PTHR39455"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07072">
        <property type="entry name" value="ZapD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF160950">
        <property type="entry name" value="SSF160950"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4 5" id="KW-0131">Cell cycle</keyword>
    <keyword evidence="2 5" id="KW-0132">Cell division</keyword>
    <keyword evidence="1 5" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 5" id="KW-0717">Septation</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022490"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022618"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023210"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023306"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01092"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="ABX38121.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="251" mass="28552" checksum="745C59406FC34B05" modified="2008-01-15" version="1">MILYEYPFNERLRTYLRLEQLYRRLGELLSRAHSIDHHFALVTIFEIMDVAARTDLKTDVLKDLERHKSLLDSLRGNPDIAEHMLDQVSRHVEQCFAQLNAQNGKAGQSLTDNEWLMAVRSRIGIPGGTCGFDLPAYHAWQFHDPQVRLRDLEDWASTLTPLGQSLQLLLKMLRETGVPQWVAAEKGVFQQAMPPGRSFQLLRLRIDPALNLVPEISGNRLLVSVRLLRPESGAKPQPCSEDASFEVTLCS</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="51" xmlns="http://uniprot.org/uniprot">
    <accession>A9BPC2</accession>
    <name>A9BPC2_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ordered locus">Daci_0039</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="5" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Periplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the UPF0065 (bug) family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX32686.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012201979.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_0039"/>
    <dbReference type="PRIDE" id="A9BPC2"/>
    <dbReference type="EnsemblBacteria" id="ABX32686">
        <property type="protein sequence ID" value="ABX32686"/>
        <property type="gene ID" value="Daci_0039"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_0039"/>
    <dbReference type="eggNOG" id="COG3181">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_045683_0_1_4"/>
    <dbReference type="OMA" id="RITFTSV"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0042597">
        <property type="term" value="C:periplasmic space"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.190.150">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005064">
        <property type="entry name" value="BUG"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR042100">
        <property type="entry name" value="Bug_dom1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR42928">
        <property type="entry name" value="PTHR42928"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03401">
        <property type="entry name" value="TctC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF017082">
        <property type="entry name" value="YflP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="3">
        <location>
            <begin position="1"/>
            <end position="24"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5002734949" evidence="3">
        <location>
            <begin position="25"/>
            <end position="324"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004418"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00006987"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="ABX32686.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="324" mass="33372" checksum="9E49885AF9467F0B" modified="2008-01-15" version="1">MTAITRRTALLAGAASLSLSTARAQGGFPSRPIQLIHGFGAGGNADVVARLVAQKLQESLRQPVVVEIKSGAGGSIASNFVAKAVPDGYSLVMLTGAHTVSAALRKSLPYDAVKDFAFVSTVSSFPFVVAVRAEHPARTLADLLAMARKEPGRITFTSVGVGSTQHMAGELLGSTAKVQLLHVPYRGGGAPVQAVIAGDVDVLSDTLTVAMPHIKSGRLRALAVTSAQAWPTLPEVPPASAVLPGFEVHSWLGLAAPAGTPADVVQRLAAEAHKALKEPDLLQALASAGSAATPCSPEEMRAMVGAEIARWRGVIQQVGIPLQA</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="67" xmlns="http://uniprot.org/uniprot">
    <accession>A9BPH3</accession>
    <name>A9BPH3_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Enoyl-CoA hydratase/isomerase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_0194</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the enoyl-CoA hydratase/isomerase family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX32840.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012202133.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_0194"/>
    <dbReference type="PRIDE" id="A9BPH3"/>
    <dbReference type="EnsemblBacteria" id="ABX32840">
        <property type="protein sequence ID" value="ABX32840"/>
        <property type="gene ID" value="Daci_0194"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_0194"/>
    <dbReference type="eggNOG" id="COG1024">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_009834_7_2_4"/>
    <dbReference type="OMA" id="RMNAWTP"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016853">
        <property type="term" value="F:isomerase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029045">
        <property type="entry name" value="ClpP/crotonase-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018376">
        <property type="entry name" value="Enoyl-CoA_hyd/isom_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001753">
        <property type="entry name" value="Enoyl-CoA_hydra/iso"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00378">
        <property type="entry name" value="ECH_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52096">
        <property type="entry name" value="SSF52096"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00166">
        <property type="entry name" value="ENOYL_COA_HYDRATASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2" id="KW-0413">Isomerase</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="RuleBase" id="RU003707"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX32840.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="265" mass="28596" checksum="50F42D9FBB99917B" modified="2008-01-15" version="1">MNTSPVLTSVQDGIGTITLNRPEARNALNQAMRPALAAAVAQMRDDAQVHTVILTGAGGAFCSGGDISQMMDASQAGLPWRQRMRSLHQWFPELVNLEKPVIAAVDGPAFGAGLSLALAADFVLCTRRAKFCAVFGRIGLVPDLGAMHMLPRIVGLQKAKELVFTARTVQAEEARSLGMVYEIVEDGEALQAAAVALARRFGEASTAAIGMAKTAMNQAFELDARAMAELEAYAQTMCRGSDYHQEAVQRFKDKQPTRFDWDRAP</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="51" xmlns="http://uniprot.org/uniprot">
    <accession>A9BPJ6</accession>
    <name>A9BPJ6_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Transmembrane pair domain protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Daci_0217</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="4" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX32863.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012202156.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="PRIDE" id="A9BPJ6"/>
    <dbReference type="EnsemblBacteria" id="ABX32863">
        <property type="protein sequence ID" value="ABX32863"/>
        <property type="gene ID" value="Daci_0217"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_0217"/>
    <dbReference type="eggNOG" id="COG4125">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_120004_0_0_4"/>
    <dbReference type="OMA" id="ILVPCYT"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007896">
        <property type="entry name" value="BTP_bacteria"/>
    </dbReference>
    <dbReference type="Pfam" id="PF05232">
        <property type="entry name" value="BTP"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1 3" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="17"/>
            <end position="39"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="45"/>
            <end position="67"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="88"/>
            <end position="107"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="119"/>
            <end position="136"/>
        </location>
    </feature>
    <feature type="domain" description="BTP" evidence="2">
        <location>
            <begin position="12"/>
            <end position="73"/>
        </location>
    </feature>
    <feature type="domain" description="BTP" evidence="2">
        <location>
            <begin position="79"/>
            <end position="141"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF05232"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ABX32863.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="164" mass="17864" checksum="D9616BBCF2A8A842" modified="2008-01-15" version="1">MTLQTHKKGLQGPKRKVVFVTLYELIAIAASSLLFMAIGQSAGHSGGMAIAASTLAIVWNLTFNHLFEQWEARQSVKGRSVMRRVVHALGFEGGLAMVLIPLMAWWFGVTLWEATVMEAGLLVFFLVYTYVFNWCFDHVFGLPASASASAAVAPRAQGEPACSN</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2021-09-29" version="91" xmlns="http://uniprot.org/uniprot">
    <accession>A9BPJ7</accession>
    <name>A9BPJ7_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="6">Two component transcriptional regulator, LuxR family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ordered locus">Daci_0218</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="7" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX32864.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_0218"/>
    <dbReference type="EnsemblBacteria" id="ABX32864">
        <property type="protein sequence ID" value="ABX32864"/>
        <property type="gene ID" value="Daci_0218"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_0218"/>
    <dbReference type="eggNOG" id="COG0745">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="eggNOG" id="COG2197">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_000445_90_4_4"/>
    <dbReference type="OMA" id="WSTPQAT"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000160">
        <property type="term" value="P:phosphorelay signal transduction system"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006355">
        <property type="term" value="P:regulation of transcription, DNA-templated"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd06170">
        <property type="entry name" value="LuxR_C_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011006">
        <property type="entry name" value="CheY-like_superfamily"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016032">
        <property type="entry name" value="Sig_transdc_resp-reg_C-effctor"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001789">
        <property type="entry name" value="Sig_transdc_resp-reg_receiver"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000792">
        <property type="entry name" value="Tscrpt_reg_LuxR_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR039420">
        <property type="entry name" value="WalR-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR48111">
        <property type="entry name" value="PTHR48111"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00196">
        <property type="entry name" value="GerE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00072">
        <property type="entry name" value="Response_reg"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00038">
        <property type="entry name" value="HTHLUXR"/>
    </dbReference>
    <dbReference type="SMART" id="SM00421">
        <property type="entry name" value="HTH_LUXR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00448">
        <property type="entry name" value="REC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46894">
        <property type="entry name" value="SSF46894"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52172">
        <property type="entry name" value="SSF52172"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00622">
        <property type="entry name" value="HTH_LUXR_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50043">
        <property type="entry name" value="HTH_LUXR_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50110">
        <property type="entry name" value="RESPONSE_REGULATORY"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="2" id="KW-0597">Phosphoprotein</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Response regulatory" evidence="5">
        <location>
            <begin position="28"/>
            <end position="144"/>
        </location>
    </feature>
    <feature type="domain" description="HTH luxR-type" evidence="4">
        <location>
            <begin position="269"/>
            <end position="334"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="3">
        <location>
            <begin position="1"/>
            <end position="24"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="3">
        <location>
            <begin position="206"/>
            <end position="226"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="3">
        <location>
            <begin position="1"/>
            <end position="19"/>
        </location>
    </feature>
    <feature type="modified residue" description="4-aspartylphosphate" evidence="2">
        <location>
            <position position="77"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00169"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="PROSITE" id="PS50043"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="PROSITE" id="PS50110"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="ABX32864.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="339" mass="36370" checksum="CFD9EA5F919113C9" modified="2008-01-15" version="1">MNENPQRPQMTTADSSRHPSHPPHNAHVILVVDDALDSLRMLCDALAAEGYVVLAARDADEALQRFALTVPDGVLLDAVMPGMDGFTLCRTLKATPAWAHVPVVFMTGLSDTDQIIRGFASGGVDYVVKPLRIPEVLVRLATHVRNARATRQAQEAVDVAGLGVVVLDGQGRVAWRSPQASRWLEEAFADQPFPLEAAGDWLAGARQPDQHGKADQPGQADQEGQPAPQDLALALADGRQLLARHMGASGLGESMVLLSHEAPQTPAARRLQQVALTPRETEVLSWLSKGKTNRDIADILGMSPRTVNKHLEHIFEKLGVETRTAAAAVAGQLLQAGSP</sequence>
</entry>
<entry dataset="Swiss-Prot" created="2009-04-14" modified="2022-08-03" version="71" xmlns="http://uniprot.org/uniprot">
    <accession>A9BPS7</accession>
    <name>RS17_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">30S ribosomal protein S17</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="1" type="primary">rpsQ</name>
        <name type="ordered locus">Daci_0400</name>
    </gene>
    <organism>
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference key="1">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain>DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="1">One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA.</text>
    </comment>
    <comment type="subunit">
        <text evidence="1">Part of the 30S ribosomal subunit.</text>
    </comment>
    <comment type="similarity">
        <text evidence="1">Belongs to the universal ribosomal protein uS17 family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX33046.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012202338.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A9BPS7"/>
    <dbReference type="SMR" id="A9BPS7"/>
    <dbReference type="STRING" id="398578.Daci_0400"/>
    <dbReference type="PRIDE" id="A9BPS7"/>
    <dbReference type="EnsemblBacteria" id="ABX33046">
        <property type="protein sequence ID" value="ABX33046"/>
        <property type="gene ID" value="Daci_0400"/>
    </dbReference>
    <dbReference type="GeneID" id="60690807"/>
    <dbReference type="KEGG" id="dac:Daci_0400"/>
    <dbReference type="eggNOG" id="COG0186">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_073626_1_1_4"/>
    <dbReference type="OMA" id="HPMYGKF"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005840">
        <property type="term" value="C:ribosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0019843">
        <property type="term" value="F:rRNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003735">
        <property type="term" value="F:structural constituent of ribosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006412">
        <property type="term" value="P:translation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.50.140">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01345_B">
        <property type="entry name" value="Ribosomal_S17_B"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012340">
        <property type="entry name" value="NA-bd_OB-fold"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019984">
        <property type="entry name" value="Ribosomal_S17"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000266">
        <property type="entry name" value="Ribosomal_S17/S11"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019979">
        <property type="entry name" value="Ribosomal_S17_CS"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10744">
        <property type="entry name" value="PTHR10744"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00366">
        <property type="entry name" value="Ribosomal_S17"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00973">
        <property type="entry name" value="RIBOSOMALS17"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50249">
        <property type="entry name" value="SSF50249"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR03635">
        <property type="entry name" value="uS17_bact"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00056">
        <property type="entry name" value="RIBOSOMAL_S17"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword id="KW-1185">Reference proteome</keyword>
    <keyword id="KW-0687">Ribonucleoprotein</keyword>
    <keyword id="KW-0689">Ribosomal protein</keyword>
    <keyword id="KW-0694">RNA-binding</keyword>
    <keyword id="KW-0699">rRNA-binding</keyword>
    <feature type="chain" id="PRO_1000143246" description="30S ribosomal protein S17">
        <location>
            <begin position="1"/>
            <end position="89"/>
        </location>
    </feature>
    <evidence type="ECO:0000255" key="1">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01345"/>
        </source>
    </evidence>
    <sequence length="89" mass="10193" checksum="0CA676B05FB851E3" modified="2008-01-15" version="1">MTEAKKSLKRTLIGKVVSDKRAKTVTVMVERRVKHPIYDKIMIKSSKYHAHDEQGEYKLGDVVEITESRPLSKTKNWVATRLVQKAALV</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="63" xmlns="http://uniprot.org/uniprot">
    <accession>A9BQ04</accession>
    <name>A9BQ04_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="7">Inner-membrane translocator</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ordered locus">Daci_0573</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="8" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX33219.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012202505.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_0573"/>
    <dbReference type="PRIDE" id="A9BQ04"/>
    <dbReference type="EnsemblBacteria" id="ABX33219">
        <property type="protein sequence ID" value="ABX33219"/>
        <property type="gene ID" value="Daci_0573"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_0573"/>
    <dbReference type="eggNOG" id="COG0559">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_039929_0_0_4"/>
    <dbReference type="OMA" id="TTLYYDT"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0022857">
        <property type="term" value="F:transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001851">
        <property type="entry name" value="ABC_transp_permease"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02653">
        <property type="entry name" value="BPD_transp_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="5 6" id="KW-0472">Membrane</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 6" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="4 6" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="13"/>
            <end position="31"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="63"/>
            <end position="80"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="92"/>
            <end position="110"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="116"/>
            <end position="135"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="147"/>
            <end position="171"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="191"/>
            <end position="213"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="234"/>
            <end position="260"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="280"/>
            <end position="303"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="310"/>
            <end position="330"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="ABX33219.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="342" mass="36285" checksum="04D3B783248692FD" modified="2008-01-15" version="1">MDLQIALLLGQDGIVNGAVYGLMALALVLVFSVTRIIFIPQGEFVAFGALTLAMMQAGRVPTTLWLLLALAAAVLVVDLLRWRAGSQVSWPATFLWCLALPAIAVALAWGLRPSSLMLQALATLVLITPMGPLLYRLAYRPLAHASVLMLLIVSVAMHGVLVGLGLLFFGAEGSRTPAFSEAQLRLGDITISGQSLVVVGVTLVLVALLFVFFERSMIGKALRATAINRVGARLMGIPTAMAGDVSFALAALIGAISGLLIAPLTTVYYDTGFLIGLKGFVAAIVGGLASYPLALAGALLVGLLEAFSSFWASAYKEVLVFTLIIPVLWWRSRNSHHVEEEE</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="82" xmlns="http://uniprot.org/uniprot">
    <accession>A9BQ06</accession>
    <name>A9BQ06_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="8">ABC transporter related</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="8" type="ordered locus">Daci_0575</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="9" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX33221.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012202507.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_0575"/>
    <dbReference type="EnsemblBacteria" id="ABX33221">
        <property type="protein sequence ID" value="ABX33221"/>
        <property type="gene ID" value="Daci_0575"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_0575"/>
    <dbReference type="eggNOG" id="COG0410">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_000604_1_2_4"/>
    <dbReference type="OMA" id="LVPEHRE"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003593">
        <property type="entry name" value="AAA+_ATPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003439">
        <property type="entry name" value="ABC_transporter-like_ATP-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017871">
        <property type="entry name" value="ABC_transporter-like_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00005">
        <property type="entry name" value="ABC_tran"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00382">
        <property type="entry name" value="AAA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00211">
        <property type="entry name" value="ABC_TRANSPORTER_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50893">
        <property type="entry name" value="ABC_TRANSPORTER_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3 6" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="1" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="5" id="KW-0472">Membrane</keyword>
    <keyword evidence="2 6" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4" id="KW-1278">Translocase</keyword>
    <feature type="domain" description="ABC transporter" evidence="7">
        <location>
            <begin position="6"/>
            <end position="239"/>
        </location>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <begin position="38"/>
            <end position="45"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022967"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00434"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="PROSITE" id="PS50893"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="ABX33221.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="248" mass="26813" checksum="3208C4F6D2090429" modified="2008-01-15" version="1">MSDTLLQLRGLSVSYGPVEAVHQVDLDVRSGEIVTVIGPNGAGKTTLLSAAMGLLPSRGEIHLDGKRIARPGVEVMVANGVALVPEKRELFGEMSVEDNLLLGGFSRWRRGLRDQAQRMDEVFAIFPRLRERRPQMASTLSGGERQMLAIGRALMARPRLLLLDEPSLGLAPLIVREVLQVVAGLRDHGVSVLLVEQNARAALKVADRAYVLEMGAVALSGAARDLLHDRRIIDTYLGMGRSAEAVAA</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="63" xmlns="http://uniprot.org/uniprot">
    <accession>A9BQ65</accession>
    <name>A9BQ65_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="6">SAF domain</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ordered locus">Daci_0634</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="7" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Periplasm</location>
        </subcellularLocation>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX33280.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012202566.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_0634"/>
    <dbReference type="PRIDE" id="A9BQ65"/>
    <dbReference type="EnsemblBacteria" id="ABX33280">
        <property type="protein sequence ID" value="ABX33280"/>
        <property type="gene ID" value="Daci_0634"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_0634"/>
    <dbReference type="eggNOG" id="COG1261">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_070510_2_1_4"/>
    <dbReference type="OMA" id="RYEIQVN"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0042597">
        <property type="term" value="C:periplasmic space"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0044780">
        <property type="term" value="P:bacterial-type flagellum assembly"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017585">
        <property type="entry name" value="Flag_basal_body_FlgA_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR039246">
        <property type="entry name" value="Flagellar_FlgA"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041231">
        <property type="entry name" value="FlgA_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013974">
        <property type="entry name" value="SAF"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR36307">
        <property type="entry name" value="PTHR36307"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13144">
        <property type="entry name" value="ChapFlgA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF17656">
        <property type="entry name" value="ChapFlgA_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00858">
        <property type="entry name" value="SAF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR03170">
        <property type="entry name" value="flgA_cterm"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-0574">Periplasm</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 4" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="4">
        <location>
            <begin position="1"/>
            <end position="37"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5002732405" evidence="4">
        <location>
            <begin position="38"/>
            <end position="254"/>
        </location>
    </feature>
    <feature type="domain" description="SAF" evidence="5">
        <location>
            <begin position="131"/>
            <end position="193"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004418"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022729"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022764"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="SMART" id="SM00858"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="ABX33280.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="254" mass="26291" checksum="C01E126659A071A0" modified="2008-01-15" version="1">MPNFSTAHSLSAVRALARAAACAALAAGASLAGPAFAQNAPDGAAQLSQIGQRFADEALQQGMAGAGALPLRMEVQMGQLDPRLRLAACAKVEPYLPAGSRLWGRTRLGLRCLQGAVAWNVFLPITVKAWGPAWVLQNGVPSGRPLSADDAVQAEVDWAEESAAVYANQQDWVGLVASRPLAAGQALRQNMLRTPALFAVGAEVRVLVNGGGFSVTSSGKAMSAAGEGQTVRVRMDNGRLISGVVNPEGVVLVQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="70" xmlns="http://uniprot.org/uniprot">
    <accession>A9BQ73</accession>
    <name>A9BQ73_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="4">Flagellar FliJ protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="12" type="ordered locus">Daci_0642</name>
    </gene>
    <organism evidence="12 13">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="12 13" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="13">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="13" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="13">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="2">Cell membrane</location>
            <topology evidence="2">Peripheral membrane protein</topology>
            <orientation evidence="2">Cytoplasmic side</orientation>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Peripheral membrane protein</topology>
            <orientation evidence="1">Cytoplasmic side</orientation>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="3">Belongs to the FliJ family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX33288.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012202574.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_0642"/>
    <dbReference type="PRIDE" id="A9BQ73"/>
    <dbReference type="EnsemblBacteria" id="ABX33288">
        <property type="protein sequence ID" value="ABX33288"/>
        <property type="gene ID" value="Daci_0642"/>
    </dbReference>
    <dbReference type="GeneID" id="60690983"/>
    <dbReference type="KEGG" id="dac:Daci_0642"/>
    <dbReference type="eggNOG" id="COG2882">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_140293_0_0_4"/>
    <dbReference type="OMA" id="EVMYHHY"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009288">
        <property type="term" value="C:bacterial-type flagellum"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0044781">
        <property type="term" value="P:bacterial-type flagellum organization"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0071973">
        <property type="term" value="P:bacterial-type flagellum-dependent cell motility"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006935">
        <property type="term" value="P:chemotaxis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015031">
        <property type="term" value="P:protein transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012823">
        <property type="entry name" value="Flagell_FliJ"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02050">
        <property type="entry name" value="FliJ"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR02473">
        <property type="entry name" value="flagell_FliJ"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="8" id="KW-1005">Bacterial flagellum biogenesis</keyword>
    <keyword evidence="6" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="12" id="KW-0966">Cell projection</keyword>
    <keyword evidence="7" id="KW-0145">Chemotaxis</keyword>
    <keyword evidence="12" id="KW-0969">Cilium</keyword>
    <keyword evidence="11" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="12" id="KW-0282">Flagellum</keyword>
    <keyword evidence="10" id="KW-0472">Membrane</keyword>
    <keyword evidence="9" id="KW-0653">Protein transport</keyword>
    <keyword evidence="13" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="5" id="KW-0813">Transport</keyword>
    <feature type="coiled-coil region" evidence="11">
        <location>
            <begin position="4"/>
            <end position="52"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004287"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00004413"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00010004"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00020392"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022448"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022500"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00022795"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00022927"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="EMBL" id="ABX33288.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="13">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="154" mass="17995" checksum="D85EA912BC0D2300" modified="2008-01-15" version="1">MSSLNALMVAIDAASRKRDEARQAVQERLRSQQAAQTQMEQLQHYVQEMQTRWGAQENQSVQPEVMFHQYQFMDRLQHAIGLQTRVLADLAIRLEAAQKALMACELRVSSLRKVVEVRRRDLALSQMRREQKETDERAAIQFFRRSFGLTFQEA</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="71" xmlns="http://uniprot.org/uniprot">
    <accession>A9BQA2</accession>
    <name>A9BQA2_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Protein serine/threonine phosphatase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Daci_0866</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="4" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX33512.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_0866"/>
    <dbReference type="PRIDE" id="A9BQA2"/>
    <dbReference type="EnsemblBacteria" id="ABX33512">
        <property type="protein sequence ID" value="ABX33512"/>
        <property type="gene ID" value="Daci_0866"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_0866"/>
    <dbReference type="eggNOG" id="COG0631">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_034545_4_1_4"/>
    <dbReference type="OMA" id="EDHTWVA"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004722">
        <property type="term" value="F:protein serine/threonine phosphatase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006470">
        <property type="term" value="P:protein dephosphorylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd00143">
        <property type="entry name" value="PP2Cc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.60.40.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015655">
        <property type="entry name" value="PP2C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036457">
        <property type="entry name" value="PPM-type_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001932">
        <property type="entry name" value="PPM-type_phosphatase_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR13832">
        <property type="entry name" value="PTHR13832"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00331">
        <property type="entry name" value="PP2C_SIG"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00332">
        <property type="entry name" value="PP2Cc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF81606">
        <property type="entry name" value="SSF81606"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51746">
        <property type="entry name" value="PPM_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="PPM-type phosphatase" evidence="2">
        <location>
            <begin position="30"/>
            <end position="280"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="24"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Pro residues" evidence="1">
        <location>
            <begin position="1"/>
            <end position="15"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS51746"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ABX33512.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="293" mass="30760" checksum="1BF59E4F18FA92FE" modified="2008-01-15" version="1">MATPPRPPFATMPSAPKTPDQPCRQAVPAQHCAMVARTDVGRRRDNNEDAVTIHPSAQPWPIAVLADGMGGYNAGEVASAMAISLVSVALQSVTTEAPAANTPQARQELQQSLANALNLANAAILTAARETPGCRGMGTTIIAAALLPGLLMLAHLGDSRAYGWREGQLLRLTRDHTWLQEEIDAGRIQDHEARQSGLGHLLTQALGVTPDVTPDFNEWPLQPGDRILLCSDGLTDMLDDQAIAALFTQSSPLPVLLTSLLAAANEAGGNDNISAALIEIQASPPPAASTSLD</sequence>
</entry>
<entry dataset="Swiss-Prot" created="2009-04-14" modified="2022-08-03" version="81" xmlns="http://uniprot.org/uniprot">
    <accession>A9BQA5</accession>
    <name>SUCC_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Succinate--CoA ligase [ADP-forming] subunit beta</fullName>
            <ecNumber evidence="1">6.2.1.5</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="1">Succinyl-CoA synthetase subunit beta</fullName>
            <shortName evidence="1">SCS-beta</shortName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="1" type="primary">sucC</name>
        <name type="ordered locus">Daci_0869</name>
    </gene>
    <organism>
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference key="1">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain>DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="1">Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The beta subunit provides nucleotide specificity of the enzyme and binds the substrate succinate, while the binding sites for coenzyme A and phosphate are found in the alpha subunit.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>ATP + CoA + succinate = ADP + phosphate + succinyl-CoA</text>
            <dbReference type="Rhea" id="RHEA:17661"/>
            <dbReference type="ChEBI" id="CHEBI:30031"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:43474"/>
            <dbReference type="ChEBI" id="CHEBI:57287"/>
            <dbReference type="ChEBI" id="CHEBI:57292"/>
            <dbReference type="ChEBI" id="CHEBI:456216"/>
            <dbReference type="EC" id="6.2.1.5"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </cofactor>
        <text evidence="1">Binds 1 Mg(2+) ion per subunit.</text>
    </comment>
    <comment type="pathway">
        <text evidence="1">Carbohydrate metabolism; tricarboxylic acid cycle; succinate from succinyl-CoA (ligase route): step 1/1.</text>
    </comment>
    <comment type="subunit">
        <text evidence="1">Heterotetramer of two alpha and two beta subunits.</text>
    </comment>
    <comment type="similarity">
        <text evidence="1">Belongs to the succinate/malate CoA ligase beta subunit family.</text>
    </comment>
    <dbReference type="EC" id="6.2.1.5" evidence="1"/>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX33515.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012202801.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A9BQA5"/>
    <dbReference type="SMR" id="A9BQA5"/>
    <dbReference type="STRING" id="398578.Daci_0869"/>
    <dbReference type="PRIDE" id="A9BQA5"/>
    <dbReference type="EnsemblBacteria" id="ABX33515">
        <property type="protein sequence ID" value="ABX33515"/>
        <property type="gene ID" value="Daci_0869"/>
    </dbReference>
    <dbReference type="GeneID" id="60685436"/>
    <dbReference type="KEGG" id="dac:Daci_0869"/>
    <dbReference type="eggNOG" id="COG0045">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_037430_0_2_4"/>
    <dbReference type="OMA" id="ITACDEV"/>
    <dbReference type="UniPathway" id="UPA00223">
        <property type="reaction ID" value="UER00999"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000287">
        <property type="term" value="F:magnesium ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004775">
        <property type="term" value="F:succinate-CoA ligase (ADP-forming) activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006099">
        <property type="term" value="P:tricarboxylic acid cycle"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.1490.20">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.261">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00558">
        <property type="entry name" value="Succ_CoA_beta"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011761">
        <property type="entry name" value="ATP-grasp"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013650">
        <property type="entry name" value="ATP-grasp_succ-CoA_synth-type"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013815">
        <property type="entry name" value="ATP_grasp_subdomain_1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005811">
        <property type="entry name" value="CoA_ligase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017866">
        <property type="entry name" value="Succ-CoA_synthase_bsu_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005809">
        <property type="entry name" value="Succ_CoA_synthase_bsu"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016102">
        <property type="entry name" value="Succinyl-CoA_synth-like"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11815">
        <property type="entry name" value="PTHR11815"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08442">
        <property type="entry name" value="ATP-grasp_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00549">
        <property type="entry name" value="Ligase_CoA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF001554">
        <property type="entry name" value="SucCS_beta"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52210">
        <property type="entry name" value="SSF52210"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01016">
        <property type="entry name" value="sucCoAbeta"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50975">
        <property type="entry name" value="ATP_GRASP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01217">
        <property type="entry name" value="SUCCINYL_COA_LIG_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword id="KW-0067">ATP-binding</keyword>
    <keyword id="KW-0436">Ligase</keyword>
    <keyword id="KW-0460">Magnesium</keyword>
    <keyword id="KW-0479">Metal-binding</keyword>
    <keyword id="KW-0547">Nucleotide-binding</keyword>
    <keyword id="KW-1185">Reference proteome</keyword>
    <keyword id="KW-0816">Tricarboxylic acid cycle</keyword>
    <feature type="chain" id="PRO_1000129179" description="Succinate--CoA ligase [ADP-forming] subunit beta">
        <location>
            <begin position="1"/>
            <end position="386"/>
        </location>
    </feature>
    <feature type="domain" description="ATP-grasp" evidence="1">
        <location>
            <begin position="9"/>
            <end position="244"/>
        </location>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <position position="46"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <begin position="53"/>
            <end position="55"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <position position="99"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <position position="102"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <position position="107"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <position position="199"/>
        </location>
        <ligand>
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <position position="213"/>
        </location>
        <ligand>
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <position position="264"/>
        </location>
        <ligand>
            <name>substrate</name>
            <note>ligand shared with subunit alpha</note>
        </ligand>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <begin position="321"/>
            <end position="323"/>
        </location>
        <ligand>
            <name>substrate</name>
            <note>ligand shared with subunit alpha</note>
        </ligand>
    </feature>
    <evidence type="ECO:0000255" key="1">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00558"/>
        </source>
    </evidence>
    <sequence length="386" mass="41167" checksum="0810EAD073A832FD" modified="2008-01-15" version="1">MKIHEYQGKDILRQFGVPVPRGIPAFTVQEAVEAAQKLGGPVWVVKAQIHAGGRGKGGGVKVAKSIDDVKALAGQILGMQLVTHQTGPEGQKVRRLYIEDGADIQKEYYLSCVTDRGTQKVAFIASSEGGMDIEEVAHSTPEKIITIFVDPLVGLTQAQGEELAKGIGMPADSTAQFIDICQKLYKCYMDTDASLVEINPLNRDSKGNVVALDAKFNFDANALFRLPEIVALRDLDEEDPAEVEASKFDLAYISLDGNIGCLVNGAGLAMATMDTIKLFGGEPANFLDVGGGATPEKVTEAFKIMLKNPKVEGILVNIFGGIMKCDTIATGVITACKAVNLQVPLVVRMKGTNEELGKKMLAESGLPIISADTMAEAATKIVEAVK</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="75" xmlns="http://uniprot.org/uniprot">
    <accession>A9BQC6</accession>
    <name>A9BQC6_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="10">Asparaginase</fullName>
            <ecNumber evidence="10">3.5.1.1</ecNumber>
        </submittedName>
    </protein>
    <gene>
        <name evidence="10" type="ordered locus">Daci_0890</name>
    </gene>
    <organism evidence="10 11">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="10 11" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="11">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="11" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="11">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the asparaginase 1 family.</text>
    </comment>
    <dbReference type="EC" id="3.5.1.1" evidence="10"/>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX33536.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012202822.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_0890"/>
    <dbReference type="PRIDE" id="A9BQC6"/>
    <dbReference type="EnsemblBacteria" id="ABX33536">
        <property type="protein sequence ID" value="ABX33536"/>
        <property type="gene ID" value="Daci_0890"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_0890"/>
    <dbReference type="eggNOG" id="COG0252">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_019134_1_2_4"/>
    <dbReference type="OMA" id="AMNNQIN"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004067">
        <property type="term" value="F:asparaginase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006528">
        <property type="term" value="P:asparagine metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd08964">
        <property type="entry name" value="L-asparaginase_II"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.1170">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.40">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004550">
        <property type="entry name" value="AsnASE_II"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036152">
        <property type="entry name" value="Asp/glu_Ase-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006034">
        <property type="entry name" value="Asparaginase/glutaminase-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027475">
        <property type="entry name" value="Asparaginase/glutaminase_AS2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR040919">
        <property type="entry name" value="Asparaginase_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027473">
        <property type="entry name" value="L-asparaginase_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027474">
        <property type="entry name" value="L-asparaginase_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037152">
        <property type="entry name" value="L-asparaginase_N_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00710">
        <property type="entry name" value="Asparaginase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF17763">
        <property type="entry name" value="Asparaginase_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF001220">
        <property type="entry name" value="L-ASNase_gatD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00139">
        <property type="entry name" value="ASNGLNASE"/>
    </dbReference>
    <dbReference type="SMART" id="SM00870">
        <property type="entry name" value="Asparaginase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53774">
        <property type="entry name" value="SSF53774"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00917">
        <property type="entry name" value="ASN_GLN_ASE_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51732">
        <property type="entry name" value="ASN_GLN_ASE_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2 10" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="11" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="7" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="7">
        <location>
            <begin position="1"/>
            <end position="26"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5002735917" evidence="7">
        <location>
            <begin position="27"/>
            <end position="354"/>
        </location>
    </feature>
    <feature type="domain" description="Asparaginase" evidence="8">
        <location>
            <begin position="32"/>
            <end position="221"/>
        </location>
    </feature>
    <feature type="domain" description="Asparaginase_C" evidence="9">
        <location>
            <begin position="237"/>
            <end position="351"/>
        </location>
    </feature>
    <feature type="region of interest" description="Substrate binding" evidence="4">
        <location>
            <begin position="117"/>
            <end position="118"/>
        </location>
    </feature>
    <feature type="active site" description="Acyl-ester intermediate" evidence="5">
        <location>
            <position position="40"/>
        </location>
    </feature>
    <feature type="active site" description="O-isoaspartyl threonine intermediate" evidence="3">
        <location>
            <position position="40"/>
        </location>
    </feature>
    <feature type="active site" evidence="6">
        <location>
            <position position="117"/>
        </location>
    </feature>
    <feature type="binding site" evidence="4">
        <location>
            <position position="84"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00010518"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="PIRSR" id="PIRSR001220-1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="PIRSR" id="PIRSR001220-2"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="PIRSR" id="PIRSR604550-50"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU10100"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="Pfam" id="PF00710"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="9">
        <source>
            <dbReference type="Pfam" id="PF17763"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="EMBL" id="ABX33536.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="354" mass="37743" checksum="9D7C78D1327EB94B" modified="2008-01-15" version="1">MKAFRRTALALLTACTLPMIAASATAQEKPVVQFIATGGTIAMKIDPVKNAPVPAISGDDLLATVPDVGKYARIQVNNLSNVPSDYMDPARWVQLTQAVQAALARPEVAGAIVSHGTDTLEETAFWLDLTVQSSKPVVLIGAQRNASVSDFDGPRNLLNAVRIAVDPKARDKGAMLAMNNQINAARYVTKTHTANVETFRSGEFGFLGEVYPDRVNFASAPARRQHLPIQAQTMPEVEIFPMYGGANGQAVRQAVDRGVKGIVIDALGMGNMNVAMLDAAKYALGKNVPVVVSTRVHNGRVMPSYGFEGGGKTSFEAGAVMADDLRAPKARILLMLALQSGVTGQKDLQAVFDR</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="37" xmlns="http://uniprot.org/uniprot">
    <accession>A9BQC9</accession>
    <name>A9BQC9_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Daci_0893</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="2" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX33539.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012202825.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_0893"/>
    <dbReference type="PRIDE" id="A9BQC9"/>
    <dbReference type="EnsemblBacteria" id="ABX33539">
        <property type="protein sequence ID" value="ABX33539"/>
        <property type="gene ID" value="Daci_0893"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_0893"/>
    <dbReference type="eggNOG" id="ENOG5033XHI">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_1352786_0_0_4"/>
    <dbReference type="OMA" id="RAGSEHC"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ABX33539.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="202" mass="22652" checksum="6D663158517C7885" modified="2008-01-15" version="1">MQVRFPNPFGLALPDAQAVREYQAAQGFSDAYAQFLITQNGLDFDRLEAAPDREDYLQADDETGDNHAWLRTLHHFRAGSEHCDVEDHQRENLFAAHFMVIGHDPGGNPFVEVLHGAFKGRIGSLDHDLFAGCEDLEQFLEEMELNGFAAASVDEQTDMLCDEDQGLIWFHARSLDSFLQQCVFCDEDGSGLVVDEPGLEED</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-01-19" version="62" xmlns="http://uniprot.org/uniprot">
    <accession>A9BQJ9</accession>
    <name>A9BQJ9_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="7">Cytochrome c, class I</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ordered locus">Daci_0054</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="8" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX32701.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012201994.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_0054"/>
    <dbReference type="EnsemblBacteria" id="ABX32701">
        <property type="protein sequence ID" value="ABX32701"/>
        <property type="gene ID" value="Daci_0054"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_0054"/>
    <dbReference type="eggNOG" id="COG2010">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_101159_5_0_4"/>
    <dbReference type="OMA" id="NGIGQMP"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009055">
        <property type="term" value="F:electron transfer activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0020037">
        <property type="term" value="F:heme binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.760.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009056">
        <property type="entry name" value="Cyt_c-like_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036909">
        <property type="entry name" value="Cyt_c-like_dom_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13442">
        <property type="entry name" value="Cytochrome_CBB3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46626">
        <property type="entry name" value="SSF46626"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51007">
        <property type="entry name" value="CYTC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1 4" id="KW-0349">Heme</keyword>
    <keyword evidence="3 4" id="KW-0408">Iron</keyword>
    <keyword evidence="2 4" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="5" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="5">
        <location>
            <begin position="1"/>
            <end position="29"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5002734979" evidence="5">
        <location>
            <begin position="30"/>
            <end position="115"/>
        </location>
    </feature>
    <feature type="domain" description="Cytochrome c" evidence="6">
        <location>
            <begin position="33"/>
            <end position="112"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022617"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023004"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00433"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="PROSITE" id="PS51007"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="ABX32701.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="115" mass="11724" checksum="0445FC7F7DFAEC9D" modified="2008-01-15" version="1">MFTMKHLVHTALLGSTLLGSALLSAPAFADEAAQMALGKKLFATATPACALCHTLKDAGAEGAIGPVLDELKPDAARVARALRDGIGAMPSFKATLSEADIAALSLYVSKASAKK</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="91" xmlns="http://uniprot.org/uniprot">
    <accession>A9BQM0</accession>
    <name>A9BQM0_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">Shikimate kinase</fullName>
            <shortName evidence="2">SK</shortName>
            <ecNumber evidence="2">2.7.1.71</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="primary">aroK</name>
        <name evidence="4" type="ordered locus">Daci_0075</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="5" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="2">Catalyzes the specific phosphorylation of the 3-hydroxyl group of shikimic acid using ATP as a cosubstrate.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="2">
            <text>ATP + shikimate = 3-phosphoshikimate + ADP + H(+)</text>
            <dbReference type="Rhea" id="RHEA:13121"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:36208"/>
            <dbReference type="ChEBI" id="CHEBI:145989"/>
            <dbReference type="ChEBI" id="CHEBI:456216"/>
            <dbReference type="EC" id="2.7.1.71"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="2">
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </cofactor>
        <text evidence="2">Binds 1 Mg(2+) ion per subunit.</text>
    </comment>
    <comment type="pathway">
        <text evidence="2">Metabolic intermediate biosynthesis; chorismate biosynthesis; chorismate from D-erythrose 4-phosphate and phosphoenolpyruvate: step 5/7.</text>
    </comment>
    <comment type="subunit">
        <text evidence="2">Monomer.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="2">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the shikimate kinase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="2">Lacks conserved residue(s) required for the propagation of feature annotation.</text>
    </comment>
    <dbReference type="EC" id="2.7.1.71" evidence="2"/>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX32722.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012202015.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_0075"/>
    <dbReference type="PRIDE" id="A9BQM0"/>
    <dbReference type="EnsemblBacteria" id="ABX32722">
        <property type="protein sequence ID" value="ABX32722"/>
        <property type="gene ID" value="Daci_0075"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_0075"/>
    <dbReference type="eggNOG" id="COG0703">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="eggNOG" id="COG1396">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_908130_0_0_4"/>
    <dbReference type="OMA" id="EPEEHMA"/>
    <dbReference type="UniPathway" id="UPA00053">
        <property type="reaction ID" value="UER00088"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000287">
        <property type="term" value="F:magnesium ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004765">
        <property type="term" value="F:shikimate kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009073">
        <property type="term" value="P:aromatic amino acid family biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008652">
        <property type="term" value="P:cellular amino acid biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009423">
        <property type="term" value="P:chorismate biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniPathway"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016310">
        <property type="term" value="P:phosphorylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd00093">
        <property type="entry name" value="HTH_XRE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="CDD" id="cd00464">
        <property type="entry name" value="SK"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.260.40">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00109">
        <property type="entry name" value="Shikimate_kinase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001387">
        <property type="entry name" value="Cro/C1-type_HTH"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010982">
        <property type="entry name" value="Lambda_DNA-bd_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR031322">
        <property type="entry name" value="Shikimate/glucono_kinase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000623">
        <property type="entry name" value="Shikimate_kinase/TSH1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01202">
        <property type="entry name" value="SKI"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00530">
        <property type="entry name" value="HTH_XRE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47413">
        <property type="entry name" value="SSF47413"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50943">
        <property type="entry name" value="HTH_CROC1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2" id="KW-0028">Amino-acid biosynthesis</keyword>
    <keyword evidence="1 2" id="KW-0057">Aromatic amino acid biosynthesis</keyword>
    <keyword evidence="2" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="2" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="2 4" id="KW-0418">Kinase</keyword>
    <keyword evidence="2" id="KW-0460">Magnesium</keyword>
    <keyword evidence="2" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="2" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 4" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="HTH cro/C1-type" evidence="3">
        <location>
            <begin position="33"/>
            <end position="87"/>
        </location>
    </feature>
    <feature type="binding site" evidence="2">
        <location>
            <begin position="144"/>
            <end position="149"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="2">
        <location>
            <position position="148"/>
        </location>
        <ligand>
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="2">
        <location>
            <position position="190"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="2">
        <location>
            <position position="213"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="2">
        <location>
            <position position="252"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="2">
        <location>
            <position position="271"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="2">
        <location>
            <position position="287"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00109"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="PROSITE" id="PS50943"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="ABX32722.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="304" mass="33293" checksum="FF1DB35A2D96F887" modified="2008-01-15" version="1">MDQFETAAQSAGAADSLSEAPRNQVLQALGERVRSLRSRRGMTRRALAAAADVSERHLANLEYGTGNVSVLVLHHIAQALQCSMAELLGDVTTTSAEWLLIRELLEGRNEEDLRRVRLAAGELLGTAPSDRQRHTRIALIGLRGAGKSTLGRMLAEQLGVPFLELNQEIERIAGCSVRAIHDLYGANAYRRYERRALEEAVQIYSDVVIATPGGIVSDPATFNELLSHCTTVWLKAQPEEHMARVVAQGDTRPMAANPEAMDDLRSILEGRAGFYAKADHVVDTSGQTLEQSFDQLKALFLPAR</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="54" xmlns="http://uniprot.org/uniprot">
    <accession>A9BQN3</accession>
    <name>A9BQN3_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Acyl-CoA dehydrogenase domain protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Daci_0088</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="4" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX32735.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012202028.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_0088"/>
    <dbReference type="PRIDE" id="A9BQN3"/>
    <dbReference type="EnsemblBacteria" id="ABX32735">
        <property type="protein sequence ID" value="ABX32735"/>
        <property type="gene ID" value="Daci_0088"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_0088"/>
    <dbReference type="eggNOG" id="COG1960">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_018204_9_1_4"/>
    <dbReference type="OMA" id="DYMIAIF"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003995">
        <property type="term" value="F:acyl-CoA dehydrogenase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0050660">
        <property type="term" value="F:flavin adenine dinucleotide binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.540.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.110.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006089">
        <property type="entry name" value="Acyl-CoA_DH_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006091">
        <property type="entry name" value="Acyl-CoA_Oxase/DH_mid-dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR046373">
        <property type="entry name" value="Acyl-CoA_Oxase/DH_mid-dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013786">
        <property type="entry name" value="AcylCoA_DH/ox_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037069">
        <property type="entry name" value="AcylCoA_DH/ox_N_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009100">
        <property type="entry name" value="AcylCoA_DH/oxidase_NM_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02770">
        <property type="entry name" value="Acyl-CoA_dh_M"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02771">
        <property type="entry name" value="Acyl-CoA_dh_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56645">
        <property type="entry name" value="SSF56645"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00072">
        <property type="entry name" value="ACYL_COA_DH_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Acyl-CoA_dh_N" evidence="2">
        <location>
            <begin position="14"/>
            <end position="126"/>
        </location>
    </feature>
    <feature type="domain" description="Acyl-CoA_dh_M" evidence="1">
        <location>
            <begin position="130"/>
            <end position="225"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF02770"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF02771"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ABX32735.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="385" mass="41888" checksum="7C8D308A4B4EB1B9" modified="2008-01-15" version="1">MSVLDSLALTRIPAEDEALRAEVRAFLAQAISGLPPHVRARSWGGYSAELSRQLGEKGWIGVTLPREYGGGGRSAFTRYVLVEEYLACGAPVGSHWIADRQSGPLILKYGTEAQKRFYLPRICRGEAFFCIGMSEPGAGSDLASVKTRAVPNGKGFVLNGQKIWTTNAHHCHYMIALVRTSGEAGDRHKGLSQVIVDLSLPGVTVRPITDLSGDSHFCEVFFDNVQLPPDALIGQEGQGWEQVTAELAFERSGPERLFSSIVLFDEWLAWLRATGERSEGALRLAGRVFTELAPLRAMSVAVQDKLVRGESPIVEAALVKELGTTLEQSIPAAIADDLFAREASEVPLELLRTLNYVTEVAPSYSLRGGTRDILRGMIARGLGLR</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="93" xmlns="http://uniprot.org/uniprot">
    <accession>A9BR71</accession>
    <name>A9BR71_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="6 16 19">Mercuric reductase</fullName>
            <ecNumber evidence="5 16 19">1.16.1.1</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="15 16 19">Hg(II) reductase</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="19" type="primary">merA</name>
        <name evidence="21" type="ordered locus">Daci_0483</name>
    </gene>
    <organism evidence="21 22">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="21 22" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="22">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="22" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="22">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="2 16">Resistance to Hg(2+) in bacteria appears to be governed by a specialized system which includes mercuric reductase. MerA protein is responsible for volatilizing mercury as Hg(0).</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1 16 19">
            <text>H(+) + Hg + NADP(+) = Hg(2+) + NADPH</text>
            <dbReference type="Rhea" id="RHEA:23856"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:16170"/>
            <dbReference type="ChEBI" id="CHEBI:16793"/>
            <dbReference type="ChEBI" id="CHEBI:57783"/>
            <dbReference type="ChEBI" id="CHEBI:58349"/>
            <dbReference type="EC" id="1.16.1.1"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="16 17 19">
            <name>FAD</name>
            <dbReference type="ChEBI" id="CHEBI:57692"/>
        </cofactor>
        <text evidence="16 17 19">Binds 1 FAD per subunit.</text>
    </comment>
    <comment type="subunit">
        <text evidence="4 16 19">Homodimer.</text>
    </comment>
    <comment type="similarity">
        <text evidence="3 16 19">Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family.</text>
    </comment>
    <dbReference type="EC" id="1.16.1.1" evidence="5 16 19"/>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX33129.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
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    <dbReference type="RefSeq" id="WP_012202415.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
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    <dbReference type="STRING" id="398578.Daci_0483"/>
    <dbReference type="PRIDE" id="A9BR71"/>
    <dbReference type="EnsemblBacteria" id="ABX33129">
        <property type="protein sequence ID" value="ABX33129"/>
        <property type="gene ID" value="Daci_0483"/>
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    <dbReference type="KEGG" id="dac:Daci_0483"/>
    <dbReference type="eggNOG" id="COG1249">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_016755_1_1_4"/>
    <dbReference type="OMA" id="GTCINWG"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0050660">
        <property type="term" value="F:flavin adenine dinucleotide binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016152">
        <property type="term" value="F:mercury (II) reductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0045340">
        <property type="term" value="F:mercury ion binding"/>
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        <property type="project" value="InterPro"/>
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    <dbReference type="GO" id="GO:0050661">
        <property type="term" value="F:NADP binding"/>
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    <dbReference type="GO" id="GO:0016668">
        <property type="term" value="F:oxidoreductase activity, acting on a sulfur group of donors, NAD(P) as acceptor"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0045454">
        <property type="term" value="P:cell redox homeostasis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
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    <dbReference type="GO" id="GO:0050787">
        <property type="term" value="P:detoxification of mercury ion"/>
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        <property type="project" value="InterPro"/>
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    <dbReference type="CDD" id="cd00371">
        <property type="entry name" value="HMA"/>
        <property type="match status" value="1"/>
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        <property type="match status" value="1"/>
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    <dbReference type="Gene3D" id="3.50.50.60">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036188">
        <property type="entry name" value="FAD/NAD-bd_sf"/>
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        <property type="entry name" value="FAD/NAD-binding_dom"/>
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    <dbReference type="InterPro" id="IPR016156">
        <property type="entry name" value="FAD/NAD-linked_Rdtase_dimer_sf"/>
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    <dbReference type="InterPro" id="IPR017969">
        <property type="entry name" value="Heavy-metal-associated_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006121">
        <property type="entry name" value="HMA_dom"/>
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    <dbReference type="InterPro" id="IPR036163">
        <property type="entry name" value="HMA_dom_sf"/>
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    <dbReference type="InterPro" id="IPR021179">
        <property type="entry name" value="Mercury_reductase_MerA"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001100">
        <property type="entry name" value="Pyr_nuc-diS_OxRdtase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004099">
        <property type="entry name" value="Pyr_nucl-diS_OxRdtase_dimer"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012999">
        <property type="entry name" value="Pyr_OxRdtase_I_AS"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00403">
        <property type="entry name" value="HMA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07992">
        <property type="entry name" value="Pyr_redox_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02852">
        <property type="entry name" value="Pyr_redox_dim"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF000350">
        <property type="entry name" value="Mercury_reductase_MerA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51905">
        <property type="entry name" value="SSF51905"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55008">
        <property type="entry name" value="SSF55008"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55424">
        <property type="entry name" value="SSF55424"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR02053">
        <property type="entry name" value="MerA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01047">
        <property type="entry name" value="HMA_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50846">
        <property type="entry name" value="HMA_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00076">
        <property type="entry name" value="PYRIDINE_REDOX_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="10 16 17" id="KW-0274">FAD</keyword>
    <keyword evidence="8 16 19" id="KW-0285">Flavoprotein</keyword>
    <keyword evidence="7 16" id="KW-0475">Mercuric resistance</keyword>
    <keyword evidence="12 16 19" id="KW-0476">Mercury</keyword>
    <keyword evidence="9 16 19" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="17" id="KW-0520">NAD</keyword>
    <keyword evidence="11 16 19" id="KW-0521">NADP</keyword>
    <keyword evidence="17" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="13 16 19" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="14" id="KW-0676">Redox-active center</keyword>
    <keyword evidence="22" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HMA" evidence="20">
        <location>
            <begin position="4"/>
            <end position="69"/>
        </location>
    </feature>
    <feature type="binding site" evidence="17">
        <location>
            <position position="146"/>
        </location>
        <ligand>
            <name>FAD</name>
            <dbReference type="ChEBI" id="CHEBI:57692"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="17">
        <location>
            <begin position="278"/>
            <end position="285"/>
        </location>
        <ligand>
            <name>NAD(+)</name>
            <dbReference type="ChEBI" id="CHEBI:57540"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="17">
        <location>
            <position position="363"/>
        </location>
        <ligand>
            <name>NAD(+)</name>
            <dbReference type="ChEBI" id="CHEBI:57540"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="17">
        <location>
            <position position="404"/>
        </location>
        <ligand>
            <name>FAD</name>
            <dbReference type="ChEBI" id="CHEBI:57692"/>
        </ligand>
    </feature>
    <feature type="disulfide bond" description="Redox-active" evidence="18">
        <location>
            <begin position="137"/>
            <end position="142"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00000896"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00003340"/>
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    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00007532"/>
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    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00011738"/>
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    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00012661"/>
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    </evidence>
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        <source>
            <dbReference type="ARBA" id="ARBA00014791"/>
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    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022466"/>
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    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00022630"/>
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    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00022827"/>
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    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="ARBA" id="ARBA00022857"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="12">
        <source>
            <dbReference type="ARBA" id="ARBA00022914"/>
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    </evidence>
    <evidence type="ECO:0000256" key="13">
        <source>
            <dbReference type="ARBA" id="ARBA00023002"/>
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    </evidence>
    <evidence type="ECO:0000256" key="14">
        <source>
            <dbReference type="ARBA" id="ARBA00023284"/>
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    </evidence>
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        <source>
            <dbReference type="ARBA" id="ARBA00031725"/>
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    </evidence>
    <evidence type="ECO:0000256" key="16">
        <source>
            <dbReference type="PIRNR" id="PIRNR000350"/>
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    </evidence>
    <evidence type="ECO:0000256" key="17">
        <source>
            <dbReference type="PIRSR" id="PIRSR000350-3"/>
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    </evidence>
    <evidence type="ECO:0000256" key="18">
        <source>
            <dbReference type="PIRSR" id="PIRSR000350-4"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="19">
        <source>
            <dbReference type="RuleBase" id="RU361223"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="20">
        <source>
            <dbReference type="PROSITE" id="PS50846"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="21">
        <source>
            <dbReference type="EMBL" id="ABX33129.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="22">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="562" mass="59022" checksum="3BC7E1BCC2D373A7" modified="2008-01-15" version="1"> </sequence>
</entry>
<entry dataset="Swiss-Prot" created="2009-03-24" modified="2022-08-03" version="80" xmlns="http://uniprot.org/uniprot">
    <accession>A9BS05</accession>
    <name>TRPD_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Anthranilate phosphoribosyltransferase</fullName>
            <ecNumber evidence="1">2.4.2.18</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="1" type="primary">trpD</name>
        <name type="ordered locus">Daci_0769</name>
    </gene>
    <organism>
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference key="1">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain>DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="1">Catalyzes the transfer of the phosphoribosyl group of 5-phosphorylribose-1-pyrophosphate (PRPP) to anthranilate to yield N-(5'-phosphoribosyl)-anthranilate (PRA).</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>diphosphate + N-(5-phospho-beta-D-ribosyl)anthranilate = 5-phospho-alpha-D-ribose 1-diphosphate + anthranilate</text>
            <dbReference type="Rhea" id="RHEA:11768"/>
            <dbReference type="ChEBI" id="CHEBI:16567"/>
            <dbReference type="ChEBI" id="CHEBI:18277"/>
            <dbReference type="ChEBI" id="CHEBI:33019"/>
            <dbReference type="ChEBI" id="CHEBI:58017"/>
            <dbReference type="EC" id="2.4.2.18"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </cofactor>
        <text evidence="1">Binds 2 magnesium ions per monomer.</text>
    </comment>
    <comment type="pathway">
        <text evidence="1">Amino-acid biosynthesis; L-tryptophan biosynthesis; L-tryptophan from chorismate: step 2/5.</text>
    </comment>
    <comment type="subunit">
        <text evidence="1">Homodimer.</text>
    </comment>
    <comment type="similarity">
        <text evidence="1">Belongs to the anthranilate phosphoribosyltransferase family.</text>
    </comment>
    <dbReference type="EC" id="2.4.2.18" evidence="1"/>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX33415.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012202701.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A9BS05"/>
    <dbReference type="SMR" id="A9BS05"/>
    <dbReference type="STRING" id="398578.Daci_0769"/>
    <dbReference type="PRIDE" id="A9BS05"/>
    <dbReference type="EnsemblBacteria" id="ABX33415">
        <property type="protein sequence ID" value="ABX33415"/>
        <property type="gene ID" value="Daci_0769"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_0769"/>
    <dbReference type="eggNOG" id="COG0547">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_034315_2_1_4"/>
    <dbReference type="OMA" id="GPMTNPA"/>
    <dbReference type="UniPathway" id="UPA00035">
        <property type="reaction ID" value="UER00041"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004048">
        <property type="term" value="F:anthranilate phosphoribosyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000287">
        <property type="term" value="F:magnesium ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000162">
        <property type="term" value="P:tryptophan biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.1030.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00211">
        <property type="entry name" value="TrpD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005940">
        <property type="entry name" value="Anthranilate_Pribosyl_Tfrase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000312">
        <property type="entry name" value="Glycosyl_Trfase_fam3"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017459">
        <property type="entry name" value="Glycosyl_Trfase_fam3_N_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036320">
        <property type="entry name" value="Glycosyl_Trfase_fam3_N_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035902">
        <property type="entry name" value="Nuc_phospho_transferase"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43285">
        <property type="entry name" value="PTHR43285"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02885">
        <property type="entry name" value="Glycos_trans_3N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00591">
        <property type="entry name" value="Glycos_transf_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47648">
        <property type="entry name" value="SSF47648"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52418">
        <property type="entry name" value="SSF52418"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01245">
        <property type="entry name" value="trpD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword id="KW-0028">Amino-acid biosynthesis</keyword>
    <keyword id="KW-0057">Aromatic amino acid biosynthesis</keyword>
    <keyword id="KW-0328">Glycosyltransferase</keyword>
    <keyword id="KW-0460">Magnesium</keyword>
    <keyword id="KW-0479">Metal-binding</keyword>
    <keyword id="KW-1185">Reference proteome</keyword>
    <keyword id="KW-0808">Transferase</keyword>
    <keyword id="KW-0822">Tryptophan biosynthesis</keyword>
    <feature type="chain" id="PRO_1000099797" description="Anthranilate phosphoribosyltransferase">
        <location>
            <begin position="1"/>
            <end position="344"/>
        </location>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <position position="85"/>
        </location>
        <ligand>
            <name>5-phospho-alpha-D-ribose 1-diphosphate</name>
            <dbReference type="ChEBI" id="CHEBI:58017"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <position position="85"/>
        </location>
        <ligand>
            <name>anthranilate</name>
            <dbReference type="ChEBI" id="CHEBI:16567"/>
            <label>1</label>
        </ligand>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <begin position="88"/>
            <end position="89"/>
        </location>
        <ligand>
            <name>5-phospho-alpha-D-ribose 1-diphosphate</name>
            <dbReference type="ChEBI" id="CHEBI:58017"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <position position="93"/>
        </location>
        <ligand>
            <name>5-phospho-alpha-D-ribose 1-diphosphate</name>
            <dbReference type="ChEBI" id="CHEBI:58017"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <begin position="95"/>
            <end position="98"/>
        </location>
        <ligand>
            <name>5-phospho-alpha-D-ribose 1-diphosphate</name>
            <dbReference type="ChEBI" id="CHEBI:58017"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <position position="97"/>
        </location>
        <ligand>
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
            <label>1</label>
        </ligand>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <begin position="113"/>
            <end position="121"/>
        </location>
        <ligand>
            <name>5-phospho-alpha-D-ribose 1-diphosphate</name>
            <dbReference type="ChEBI" id="CHEBI:58017"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <position position="125"/>
        </location>
        <ligand>
            <name>5-phospho-alpha-D-ribose 1-diphosphate</name>
            <dbReference type="ChEBI" id="CHEBI:58017"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <position position="171"/>
        </location>
        <ligand>
            <name>anthranilate</name>
            <dbReference type="ChEBI" id="CHEBI:16567"/>
            <label>2</label>
        </ligand>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <position position="230"/>
        </location>
        <ligand>
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
            <label>2</label>
        </ligand>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <position position="231"/>
        </location>
        <ligand>
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
            <label>1</label>
        </ligand>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <position position="231"/>
        </location>
        <ligand>
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
            <label>2</label>
        </ligand>
    </feature>
    <evidence type="ECO:0000255" key="1">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00211"/>
        </source>
    </evidence>
    <sequence length="344" mass="36643" checksum="DFBC2D00894AEBF7" modified="2008-01-15" version="1">MTQITPQEALQRTIEHREIFHDEMLHLMRLIMRGELSPVMTAAIVTGLRVKKETIGEITAAAEVMREFSNKVHVEDKRHLVDIVGTGGDGANTFNISTCSIFVIAAAGGKVSKHGGRSVSSKSGSADAMEALGVNIQLTPEQIARSIADVGIGFMFAPNHHPAMKNVAPVRKELGVRTIFNILGPLTNPASAPNILMGVFHEDLVGIQVRALQRLGAEHAIVVYGRDGLDEISLGAGTLVGELKDGVVREYEIHPEDFGLRMVGTRAFKVDNPEESKAMLLGVLHGEKSAARDIVCLNAGAALYAANVASSIEDGMARAQAALDSGAALAKLNELVAYTARLTA</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="59" xmlns="http://uniprot.org/uniprot">
    <accession>A9BS44</accession>
    <name>A9BS44_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Phenylacetic acid degradation protein paaN</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Daci_0808</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="4" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX33454.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012202740.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_0808"/>
    <dbReference type="PRIDE" id="A9BS44"/>
    <dbReference type="EnsemblBacteria" id="ABX33454">
        <property type="protein sequence ID" value="ABX33454"/>
        <property type="gene ID" value="Daci_0808"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_0808"/>
    <dbReference type="eggNOG" id="COG1012">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_036377_1_0_4"/>
    <dbReference type="OMA" id="CNTFPTW"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016620">
        <property type="term" value="F:oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.309.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.605.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016161">
        <property type="entry name" value="Ald_DH/histidinol_DH"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016163">
        <property type="entry name" value="Ald_DH_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016162">
        <property type="entry name" value="Ald_DH_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015590">
        <property type="entry name" value="Aldehyde_DH_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011975">
        <property type="entry name" value="PaaN_2"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00171">
        <property type="entry name" value="Aldedh"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53720">
        <property type="entry name" value="SSF53720"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR02288">
        <property type="entry name" value="PaaN_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Aldedh" evidence="2">
        <location>
            <begin position="89"/>
            <end position="476"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023002"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF00171"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ABX33454.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="552" mass="58519" checksum="21D2B8F487B25A5D" modified="2008-01-15" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-05-25" version="67" xmlns="http://uniprot.org/uniprot">
    <accession>A9BS93</accession>
    <name>A9BS93_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">UPF0102 protein Daci_1062</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="4" type="ordered locus">Daci_1062</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="5" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1 2">Belongs to the UPF0102 family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX33707.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012202993.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_1062"/>
    <dbReference type="EnsemblBacteria" id="ABX33707">
        <property type="protein sequence ID" value="ABX33707"/>
        <property type="gene ID" value="Daci_1062"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_1062"/>
    <dbReference type="eggNOG" id="COG0792">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_115353_1_0_4"/>
    <dbReference type="OMA" id="PPCRFDA"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003676">
        <property type="term" value="F:nucleic acid binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.1350.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00048">
        <property type="entry name" value="UPF0102"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011335">
        <property type="entry name" value="Restrct_endonuc-II-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011856">
        <property type="entry name" value="tRNA_endonuc-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003509">
        <property type="entry name" value="UPF0102"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR34039">
        <property type="entry name" value="PTHR34039"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02021">
        <property type="entry name" value="UPF0102"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52980">
        <property type="entry name" value="SSF52980"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00252">
        <property type="entry name" value="TIGR00252"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="3">
        <location>
            <begin position="1"/>
            <end position="23"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00006738"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00048"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="ABX33707.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="138" mass="14749" checksum="CB989B0D649BA85E" modified="2008-01-15" version="1">MGFLAKKPAGAGPSALTTRHRGQQAEDAALAHLQAAGLRLVERNYRTPGRGGGEIDLIVQARNGTVVFVEVRSRGTRAFGGAGASIGATKQRRIVFAARHYLMRWSAPPPCRFDVVLVEPGAWPSVQWLQAAFDAEGA</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2021-06-02" version="44" xmlns="http://uniprot.org/uniprot">
    <accession>A9BSB7</accession>
    <name>A9BSB7_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_1086</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX33731.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012203017.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_1086"/>
    <dbReference type="EnsemblBacteria" id="ABX33731">
        <property type="protein sequence ID" value="ABX33731"/>
        <property type="gene ID" value="Daci_1086"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_1086"/>
    <dbReference type="eggNOG" id="ENOG5033770">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_145293_0_0_4"/>
    <dbReference type="OMA" id="WHPANNE"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025421">
        <property type="entry name" value="DUF4148"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13663">
        <property type="entry name" value="DUF4148"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="1">
        <location>
            <begin position="1"/>
            <end position="29"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5002733037" evidence="1">
        <location>
            <begin position="30"/>
            <end position="116"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX33731.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="116" mass="12064" checksum="560319A03740DBE7" modified="2008-01-15" version="1">MSQRRFTPATLIAGLAASAALLLPGMASAAGYIHPANNEAGAVVHPEHFKSSKTRAQVIADAEAAVRQGGTSRFNASVYPAPAPQTGAGKTRQEVINELINETPAQRDARQRAMGG</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="91" xmlns="http://uniprot.org/uniprot">
    <accession>A9BSC3</accession>
    <name>A9BSC3_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="5">Sensor protein</fullName>
            <ecNumber evidence="5">2.7.13.3</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="8" type="ordered locus">Daci_1092</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="9" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="5">Member of a two-component regulatory system.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>ATP + protein L-histidine = ADP + protein N-phospho-L-histidine.</text>
            <dbReference type="EC" id="2.7.13.3"/>
        </reaction>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="5">Cell inner membrane</location>
        </subcellularLocation>
    </comment>
    <dbReference type="EC" id="2.7.13.3" evidence="5"/>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX33737.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012203023.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_1092"/>
    <dbReference type="PRIDE" id="A9BSC3"/>
    <dbReference type="EnsemblBacteria" id="ABX33737">
        <property type="protein sequence ID" value="ABX33737"/>
        <property type="gene ID" value="Daci_1092"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_1092"/>
    <dbReference type="eggNOG" id="COG5002">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_000445_89_6_4"/>
    <dbReference type="OMA" id="RSAEHYF"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000155">
        <property type="term" value="F:phosphorelay sensor kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd00082">
        <property type="entry name" value="HisKA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.565.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006290">
        <property type="entry name" value="CztS_silS_copS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003660">
        <property type="entry name" value="HAMP_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003594">
        <property type="entry name" value="HATPase_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036890">
        <property type="entry name" value="HATPase_C_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005467">
        <property type="entry name" value="His_kinase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003661">
        <property type="entry name" value="HisK_dim/P"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036097">
        <property type="entry name" value="HisK_dim/P_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004358">
        <property type="entry name" value="Sig_transdc_His_kin-like_C"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00672">
        <property type="entry name" value="HAMP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02518">
        <property type="entry name" value="HATPase_c"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00512">
        <property type="entry name" value="HisKA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00344">
        <property type="entry name" value="BCTRLSENSOR"/>
    </dbReference>
    <dbReference type="SMART" id="SM00304">
        <property type="entry name" value="HAMP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00387">
        <property type="entry name" value="HATPase_c"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00388">
        <property type="entry name" value="HisKA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47384">
        <property type="entry name" value="SSF47384"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55874">
        <property type="entry name" value="SSF55874"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01386">
        <property type="entry name" value="cztS_silS_copS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50885">
        <property type="entry name" value="HAMP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50109">
        <property type="entry name" value="HIS_KIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="5" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="5" id="KW-0997">Cell inner membrane</keyword>
    <keyword evidence="5" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="4 5 8" id="KW-0418">Kinase</keyword>
    <keyword evidence="5" id="KW-0472">Membrane</keyword>
    <keyword evidence="5" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="2" id="KW-0597">Phosphoprotein</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 5" id="KW-0808">Transferase</keyword>
    <keyword evidence="5" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="5" id="KW-1133">Transmembrane helix</keyword>
    <keyword evidence="5" id="KW-0902">Two-component regulatory system</keyword>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="23"/>
            <end position="43"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="150"/>
            <end position="174"/>
        </location>
    </feature>
    <feature type="domain" description="HAMP" evidence="7">
        <location>
            <begin position="175"/>
            <end position="228"/>
        </location>
    </feature>
    <feature type="domain" description="Histidine kinase" evidence="6">
        <location>
            <begin position="236"/>
            <end position="456"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00000085"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022553"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022777"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="RuleBase" id="RU364088"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="PROSITE" id="PS50109"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="PROSITE" id="PS50885"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="ABX33737.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="464" mass="50297" checksum="876947053843F073" modified="2008-01-15" version="1">MSAAPAAPPAADIPHLGRRLSRWLALQTMLGLGLVCAAVYGVASMTLEQHQHETLDLKQQAVLHLMTESRSAHNEAGLAHMLDDFLTGLDEMSLRITDLQGRVIYERLRIPKTPGRTLQRSFEVVLADSGQHAQAQLTLDRADDDRQLSLLAWTLALAAVGGALLVSLTGIWLVRLGLAPLRELTEQTRKLSAQDLQRRLDDSGQPQELRPLIAQFNALLERLAVAYRQMEAFNADVAHELNTPLTTLISSCELALRKPRSEAELREVLASNLEDLRRMAGIVADMLFLSQADRGQGARLAPWASLAALAHEVIDFHEAALQEADLQVVVQGDAAAEVDARLLRRALSNLLGNATRYAQRGSTITVQIGARPCAHHGGAGDVALAVLNRGPTIAPADLPRLFDRFYRADAARSQADRNHGLGLAIVAAIARMHGGRCFAESEGGFTRIGLELPDSPSPPRDSPA</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="63" xmlns="http://uniprot.org/uniprot">
    <accession>A9BSE9</accession>
    <name>A9BSE9_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Transcriptional regulator, GlpP-family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Daci_1118</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="2" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX33763.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012203049.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_1118"/>
    <dbReference type="PRIDE" id="A9BSE9"/>
    <dbReference type="EnsemblBacteria" id="ABX33763">
        <property type="protein sequence ID" value="ABX33763"/>
        <property type="gene ID" value="Daci_1118"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_1118"/>
    <dbReference type="eggNOG" id="COG1954">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_111516_0_0_4"/>
    <dbReference type="OMA" id="PAIRNMK"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006071">
        <property type="term" value="P:glycerol metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006355">
        <property type="term" value="P:regulation of transcription, DNA-templated"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.20.20.70">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013785">
        <property type="entry name" value="Aldolase_TIM"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006699">
        <property type="entry name" value="GlpP"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR35787">
        <property type="entry name" value="PTHR35787"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04309">
        <property type="entry name" value="G3P_antiterm"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF016897">
        <property type="entry name" value="GlpP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ABX33763.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="188" mass="19892" checksum="68AA3D7B4EF12983" modified="2008-01-15" version="1">MGRPDNSLGARLARRPVIATLYGAEQMDALLASQAEVAIVANIELRRLRSVISTITGAGKIAIVNIDSCDGISPDKGGVDYLVDLGASSLLSTRVATIQRANKAGLLTMQKVFVTDRSTWPRSIKAVEQSDPNLVQIMPAPMLAHITEAERRILPPLVASGFVCSQEQVQQALAGGAIAVSTSDSGLW</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="67" xmlns="http://uniprot.org/uniprot">
    <accession>A9BSJ6</accession>
    <name>A9BSJ6_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="5">D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ordered locus">Daci_1357</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="6" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1 2">Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX34001.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012203287.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_1357"/>
    <dbReference type="PRIDE" id="A9BSJ6"/>
    <dbReference type="EnsemblBacteria" id="ABX34001">
        <property type="protein sequence ID" value="ABX34001"/>
        <property type="gene ID" value="Daci_1357"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_1357"/>
    <dbReference type="eggNOG" id="COG1052">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_019796_1_2_4"/>
    <dbReference type="OMA" id="HVAGWSP"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051287">
        <property type="term" value="F:NAD binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016616">
        <property type="term" value="F:oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006139">
        <property type="entry name" value="D-isomer_2_OHA_DH_cat_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029752">
        <property type="entry name" value="D-isomer_DH_CS1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006140">
        <property type="entry name" value="D-isomer_DH_NAD-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036291">
        <property type="entry name" value="NAD(P)-bd_dom_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00389">
        <property type="entry name" value="2-Hacid_dh"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02826">
        <property type="entry name" value="2-Hacid_dh_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51735">
        <property type="entry name" value="SSF51735"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00065">
        <property type="entry name" value="D_2_HYDROXYACID_DH_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="2-Hacid_dh" evidence="3">
        <location>
            <begin position="36"/>
            <end position="313"/>
        </location>
    </feature>
    <feature type="domain" description="2-Hacid_dh_C" evidence="4">
        <location>
            <begin position="111"/>
            <end position="282"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00005854"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="RuleBase" id="RU003719"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF00389"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="Pfam" id="PF02826"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="ABX34001.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="315" mass="33155" checksum="45968E19511BC7DC" modified="2008-01-15" version="1">MQPALLVLNFNAEGHLRQMAQAFPSFDLLYAPDASQCEAALAEHGARIQAVLTIGSIGLSAAQMQRMPALRLVCALGAGYENIDVAHAQAHGIAVGNGAGTNDDCVADHAMGLLIASVRGLVRLDRATRDGVWRTAMPLPPNVSHKRLGILGMGAIGAKIAQRALGFEMEIGYHNRSQRSELPHRYFGDLLSLAQWADVLLVATPGGPGTRHLINTQVLDALGPQGHLVNIARGSVVDTAALAAAVREGRLAGAGLDVYESEPAPPAELLDLDAVVLTPHVGGWSPEAVQASVDRFIANMRCHLEGRPLVSPVTA</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2020-10-07" version="37" xmlns="http://uniprot.org/uniprot">
    <accession>A9BT16</accession>
    <name>A9BT16_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Putative TIS1421-transposase orfA protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Daci_1733</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="2" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX34376.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_1733"/>
    <dbReference type="EnsemblBacteria" id="ABX34376">
        <property type="protein sequence ID" value="ABX34376"/>
        <property type="gene ID" value="Daci_1733"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_1733"/>
    <dbReference type="eggNOG" id="COG3293">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_2860305_0_0_4"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025161">
        <property type="entry name" value="Put_IS4/IS5"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13340">
        <property type="entry name" value="DUF4096"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ABX34376.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="64" mass="6967" checksum="CB46D95546581859" modified="2008-01-15" version="1">MPSAKGDARKLAVSDEAVLNGILFVPQTGIPWEDLPQSLGYGSGMTCWGRLRDWNAAGVWEPLH</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="55" xmlns="http://uniprot.org/uniprot">
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    <name>A9BT17_DELAS</name>
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                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
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        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
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            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX34377.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_1734"/>
    <dbReference type="PRIDE" id="A9BT17"/>
    <dbReference type="EnsemblBacteria" id="ABX34377">
        <property type="protein sequence ID" value="ABX34377"/>
        <property type="gene ID" value="Daci_1734"/>
    </dbReference>
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    <dbReference type="eggNOG" id="COG3293">
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        <property type="project" value="InterPro"/>
    </dbReference>
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        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
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        <property type="entry name" value="Transposase_11"/>
    </dbReference>
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        <property type="entry name" value="DDE_Tnp_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="DDE_Tnp_1" evidence="1">
        <location>
            <begin position="4"/>
            <end position="115"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF01609"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX34377.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="140" mass="16225" checksum="8214414CC5D89229" modified="2008-01-15" version="1">MILVSGANRHDSTIFEKCVDATPAIAGLPGRPRRRPAKLHADKGYDFKRCRAHLRQRGIIGRIARRGIESSERLGKHQWVVEWMHSWFAGFGKLRIRFERRLDIHEALLKLAAAVICARFVDRWCSPVLSPDIIKFREER</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="38" xmlns="http://uniprot.org/uniprot">
    <accession>A9BT44</accession>
    <name>A9BT44_DELAS</name>
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    <organism evidence="1 2">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
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        <lineage>
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            <taxon>Betaproteobacteria</taxon>
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            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
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                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
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            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="2" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX34609.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012203894.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_1969"/>
    <dbReference type="PRIDE" id="A9BT44"/>
    <dbReference type="EnsemblBacteria" id="ABX34609">
        <property type="protein sequence ID" value="ABX34609"/>
        <property type="gene ID" value="Daci_1969"/>
    </dbReference>
    <dbReference type="GeneID" id="60686337"/>
    <dbReference type="KEGG" id="dac:Daci_1969"/>
    <dbReference type="eggNOG" id="ENOG502ZQD3">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_161228_0_0_4"/>
    <dbReference type="OMA" id="RIYLHED"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ABX34609.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="119" mass="13686" checksum="9BC8356B163F4538" modified="2008-01-15" version="1">MALEISAEERFFTLLNQLKHMPPCSSRQEAHDMLLLLWMRICEGAGARRELLNRMRQRTLCAEHGWKNLDKSPCHLDSDTLPGIRIYLHSNGTIVIQRQGGAQDSEILHFSARREFAEA</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="76" xmlns="http://uniprot.org/uniprot">
    <accession>A9BT96</accession>
    <name>A9BT96_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="8">Amino acid permease-associated region</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="8" type="ordered locus">Daci_2021</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
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                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
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            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="9" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX34661.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012203946.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="PRIDE" id="A9BT96"/>
    <dbReference type="EnsemblBacteria" id="ABX34661">
        <property type="protein sequence ID" value="ABX34661"/>
        <property type="gene ID" value="Daci_2021"/>
    </dbReference>
    <dbReference type="GeneID" id="60686419"/>
    <dbReference type="KEGG" id="dac:Daci_2021"/>
    <dbReference type="eggNOG" id="COG1113">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_007946_9_2_4"/>
    <dbReference type="OMA" id="CYIRFYA"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006865">
        <property type="term" value="P:amino acid transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0055085">
        <property type="term" value="P:transmembrane transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004841">
        <property type="entry name" value="AA-permease/SLC12A_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004840">
        <property type="entry name" value="Amoino_acid_permease_CS"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00324">
        <property type="entry name" value="AA_permease"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00218">
        <property type="entry name" value="AMINO_ACID_PERMEASE_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="5 6" id="KW-0472">Membrane</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 6" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="4 6" id="KW-1133">Transmembrane helix</keyword>
    <keyword evidence="2" id="KW-0813">Transport</keyword>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="21"/>
            <end position="42"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="48"/>
            <end position="67"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="106"/>
            <end position="129"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="135"/>
            <end position="156"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="168"/>
            <end position="188"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="208"/>
            <end position="233"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="254"/>
            <end position="273"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="293"/>
            <end position="314"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="343"/>
            <end position="360"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="366"/>
            <end position="386"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="407"/>
            <end position="431"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="437"/>
            <end position="454"/>
        </location>
    </feature>
    <feature type="domain" description="AA_permease" evidence="7">
        <location>
            <begin position="20"/>
            <end position="435"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022448"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="Pfam" id="PF00324"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="ABX34661.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="480" mass="51328" checksum="E746758DF316C960" modified="2008-01-15" version="1">MIGHQQASSPGLSHGLKQRHMTMIALGGVIGAGLFVGSGVVIKSAGPAAILSFLITGLLVVLVMRMLGELACSMPGGGSFYEYAREAWRDRPGVGRLAGFLTGWMYWYFWVIVVALEAVAGADLVRYWLPDVPNWSISLVLLVMLTLTNLVSVKSFGEFEFWFASIKVAAIVVFLFVAGVYVLGLTPASQGMHFGNLTGNGGFMPNGIVPVLTGAVAATGFYFGAEIVTIAAAETAEPQKAVAKATSSVITRVLVFYVGSIFLVACLVPWNAVGIATPYVSALNTMGVPAAAQIMNAIVLTAVLSALNSGLYASSRMLFALTRRGDAPQALAKVSRNGVPTRAILVATVFGYGAVVMSYVSPDKVFAFLVNSYGTVAIFVYILIAISQLRLRSRLEREAPHLLKVRMWCYPYLTWFAIFGMLSIVIAMAFIPEQRTPLALGVASLCILLLAYGVRQFLQRGVAPVVSSLSEAAQPEPQKY</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="41" xmlns="http://uniprot.org/uniprot">
    <accession>A9BTB6</accession>
    <name>A9BTB6_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Multi antimicrobial extrusion protein MatE</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_2041</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX34681.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_2041"/>
    <dbReference type="PRIDE" id="A9BTB6"/>
    <dbReference type="EnsemblBacteria" id="ABX34681">
        <property type="protein sequence ID" value="ABX34681"/>
        <property type="gene ID" value="Daci_2041"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_2041"/>
    <dbReference type="eggNOG" id="COG0728">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_632701_0_0_4"/>
    <dbReference type="OMA" id="IFFSEMS"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="21"/>
            <end position="41"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="47"/>
            <end position="66"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="78"/>
            <end position="100"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="120"/>
            <end position="143"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="155"/>
            <end position="174"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="186"/>
            <end position="204"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="265"/>
            <end position="283"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="304"/>
            <end position="326"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="338"/>
            <end position="358"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="370"/>
            <end position="389"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="395"/>
            <end position="416"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX34681.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="433" mass="47651" checksum="6227929BC61D45C2" modified="2008-01-15" version="1">MGPGDAKRVFDLAVGRSAPPLASMVTIFAISFYSSTLVAQFSIALSFASLFFVLPASIGAIFFSEMSASKDKEQSDSLISLLFWLVFLYAGFCFILVYWLPVISKTLISGLPEELLDGAISQARLIILCIPFFGIINVCGCVLESRSHTAIVAKFRMWQVFFHTACVIVVLALLGKNEWMSDDSVALAYLFSDIIFSVAAYALMRKYCQFSFSFNFRGLPGRRIFSVLIPGYANAFFGKYLLYILSMSVAGLGAMYSAIQSQASAILLLAELPAMGVCALLAMEISKNRGKWAVQFQFIKDSSSLMIFCAIIPVVALSVFMLFYEISEANGSQIVGEGFLSLVCKGTTDVVFFYAAAISGGLGLYWSSRMIFWTIYAVIFFAPMSLGFHGSSYSMINYIFSFSSLVSCVMLVLLVHNRRESLSEEKIGLKESL</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="73" xmlns="http://uniprot.org/uniprot">
    <accession>A9BTL6</accession>
    <name>A9BTL6_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="6">Succinic semialdehyde dehydrogenase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ordered locus">Daci_2346</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="7" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="4">Belongs to the aldehyde dehydrogenase family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX34984.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012204266.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_2346"/>
    <dbReference type="PRIDE" id="A9BTL6"/>
    <dbReference type="EnsemblBacteria" id="ABX34984">
        <property type="protein sequence ID" value="ABX34984"/>
        <property type="gene ID" value="Daci_2346"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_2346"/>
    <dbReference type="eggNOG" id="COG1012">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_005391_5_1_4"/>
    <dbReference type="OMA" id="YGMAEYQ"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009013">
        <property type="term" value="F:succinate-semialdehyde dehydrogenase [NAD(P)+] activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009450">
        <property type="term" value="P:gamma-aminobutyric acid catabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.309.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.605.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016161">
        <property type="entry name" value="Ald_DH/histidinol_DH"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016163">
        <property type="entry name" value="Ald_DH_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016160">
        <property type="entry name" value="Ald_DH_CS_CYS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029510">
        <property type="entry name" value="Ald_DH_CS_GLU"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016162">
        <property type="entry name" value="Ald_DH_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015590">
        <property type="entry name" value="Aldehyde_DH_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010102">
        <property type="entry name" value="Succ_semiAld_DH"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00171">
        <property type="entry name" value="Aldedh"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53720">
        <property type="entry name" value="SSF53720"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01780">
        <property type="entry name" value="SSADH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00070">
        <property type="entry name" value="ALDEHYDE_DEHYDR_CYS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00687">
        <property type="entry name" value="ALDEHYDE_DEHYDR_GLU"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="1 4" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Aldedh" evidence="5">
        <location>
            <begin position="33"/>
            <end position="489"/>
        </location>
    </feature>
    <feature type="active site" evidence="2">
        <location>
            <position position="265"/>
        </location>
    </feature>
    <feature type="active site" evidence="3">
        <location>
            <position position="299"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023002"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU10007"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU10008"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="RuleBase" id="RU003345"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="Pfam" id="PF00171"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="ABX34984.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="495" mass="52421" checksum="F121916259C09C0A" modified="2008-01-15" version="1">MPLTLTRPELLRSANFIAGQWTTATATPAAPATRLAVTDPATGALITEVPDSGAAEARAALDAAHAAFPAWRRTPAKQRAAIIKRWNDLVLAHQDDLGRLISREQGKPLAEGKGEVAYAASYIEWFAEEATRMNGEIIPAPVPGRRMFALREPVGVVAAITPWNFPAAMIARKIAPALAAGCTVVCKPAEDTPLTSLALVLLAQEAGVPAGVLNIVTASREKTPEVVDVWLDDARVRKITFTGSTPVGKHLARRSADTLKKLSLELGGNAPFIVFEDADIDAAVDGFMAAKFRNGGQTCVCPNRVFVHRSVHDVFAQKLAARVAALHVGPASDPASQIGPMINARAVEKIERHVQDAVARGARVLTGGRRLDALGANYYAPTVLTGADASMACACEETFGPVAPLTVFDSEDEVIAAANDTPFGLAAYFYSNDARRIWRMADALETGIVGINEGALAAEAAPFGGVKESGYGREGSTHGLDDYLHTKYVCQGLLD</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2021-06-02" version="57" xmlns="http://uniprot.org/uniprot">
    <accession>A9BTM9</accession>
    <name>A9BTM9_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_2359</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX34997.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012204279.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_2359"/>
    <dbReference type="EnsemblBacteria" id="ABX34997">
        <property type="protein sequence ID" value="ABX34997"/>
        <property type="gene ID" value="Daci_2359"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_2359"/>
    <dbReference type="eggNOG" id="COG3391">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_1309265_0_0_4"/>
    <dbReference type="OMA" id="WHGTWEG"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.130.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011044">
        <property type="entry name" value="Quino_amine_DH_bsu"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015943">
        <property type="entry name" value="WD40/YVTN_repeat-like_dom_sf"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50969">
        <property type="entry name" value="SSF50969"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="182"/>
            <end position="218"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX34997.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="218" mass="23348" checksum="7957CE7C362AA8B1" modified="2008-01-15" version="1">MKTEAAEIIREYGPFPGIACVHGVSYDGSQVWFATGTQLQALDPDSGRIVRSIPVPGDAGTAFDGRHLFQIANDRIQKIDLSTGHVLATIPAPGGGGDAGDSGMAWAEGSLWVGQYHGRKIHQIDPDTGAVLRTLQSNRFVTGVTWVDGQLWHGTWEEGQSDLRRLDPDSGAVLQRLEMPAGTGVSGLESDGGDRFFCGGGESGRIRAVRRPRQTQQP</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="65" xmlns="http://uniprot.org/uniprot">
    <accession>A9BTT5</accession>
    <name>A9BTT5_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Cytochrome B561</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ordered locus">Daci_2711</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
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            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
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        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">DSM 14801 / SPH-1</strain>
        </source>
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        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
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        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
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        <property type="nucleotide sequence ID" value="NC_010002.1"/>
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    <dbReference type="EnsemblBacteria" id="ABX35349">
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        <property type="gene ID" value="Daci_2711"/>
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            <begin position="9"/>
            <end position="180"/>
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    <evidence type="ECO:0000256" key="2">
        <source>
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    </evidence>
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    </evidence>
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        <source>
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    </evidence>
    <sequence length="183" mass="20164" checksum="C58FC546728AB809" modified="2008-01-15" version="1">MNVRNSEYRFSPLVIGLHWLTVLLIIAVYASMELRGLAPKGALRDAMKSLHYLLGLSVLVIVVIRIGVRIQAGVKPAIQPPMPRWQATLADVMHYALYSFMLAMPLLGWLTLSAAGKPIVLFGLPIPSLIGTDVALSRQLKDVHEALATLGYVLIGSHAMAALLHHYVMRDNTLVRMLPGRRP</sequence>
</entry>
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            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
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                <person name="Fischer K."/>
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        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
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            <strain evidence="3">DSM 14801 / SPH-1</strain>
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        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
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                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
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        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
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            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
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    </dbReference>
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        <location>
            <begin position="3"/>
            <end position="182"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF01656"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX35358.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="212" mass="22859" checksum="AEA6228834E774B4" modified="2008-01-15" version="1">MIVALLNQKGGVGKTTLATHIAGELAMRGQSVILLDADPQGSALDWTQRRSQQGLPRLFSAVGLARETLHQEAPELARRADHVVIDGPPRIAALARSALLAAERVLIPVQPSPYDLWASAEMVALIREAQVFRPALRAAFVINRRVSTTVIGREARGALAEQPLPALRAEVHQRIVFADSVAAGRLARETAPDSAAAREITALVDELLRWPS</sequence>
</entry>
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            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
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                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
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            <dbReference type="PubMed" id="15240283"/>
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        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="6" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
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                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX33853.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
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    <dbReference type="STRING" id="398578.Daci_1208"/>
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    <dbReference type="EnsemblBacteria" id="ABX33853">
        <property type="protein sequence ID" value="ABX33853"/>
        <property type="gene ID" value="Daci_1208"/>
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        <source>
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    </evidence>
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        <source>
            <dbReference type="ARBA" id="ARBA00022997"/>
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    </evidence>
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        <source>
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    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="Pfam" id="PF07687"/>
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    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="ABX33853.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="591" mass="62783" checksum="01122182BA938102" modified="2008-01-15" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="56" xmlns="http://uniprot.org/uniprot">
    <accession>A9BUF7</accession>
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            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
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                <person name="Fischer K."/>
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        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
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            <strain evidence="2">DSM 14801 / SPH-1</strain>
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        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
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                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX33860.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_1216"/>
    <dbReference type="PRIDE" id="A9BUF7"/>
    <dbReference type="EnsemblBacteria" id="ABX33860">
        <property type="protein sequence ID" value="ABX33860"/>
        <property type="gene ID" value="Daci_1216"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_1216"/>
    <dbReference type="eggNOG" id="ENOG5032RVU">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_108958_0_0_4"/>
    <dbReference type="OMA" id="HYIEIRV"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004519">
        <property type="term" value="F:endonuclease activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043571">
        <property type="term" value="P:maintenance of CRISPR repeat elements"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd09739">
        <property type="entry name" value="Cas6_I-F"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.70.2540">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013396">
        <property type="entry name" value="CRISPR-assoc_prot_Csy4"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR042564">
        <property type="entry name" value="CRISPR-Cas6/Csy4_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF09618">
        <property type="entry name" value="Cas_Csy4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR02563">
        <property type="entry name" value="cas_Csy4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ABX33860.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="190" mass="20939" checksum="1D6252634A73D8D2" modified="2008-01-15" version="1">MAMTSHYIDTTLLPDPEFSHAHLLGALVAKLHRALVQLGSTDIGISFPGYSLRPRTLGTILRLHGSEAALRGLMEQPWLQGMRDHVHCTPPALVPEGAVPCLVQRRQFKTSPDRLRRRRMRRKGETAEQAAAAIPDSVERTPDLPYVQLRSASTGQPFCLFVEQKAVQGTAGQEGFNTYGLSLGTAVPWF</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="67" xmlns="http://uniprot.org/uniprot">
    <accession>A9BUL4</accession>
    <name>A9BUL4_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="7">Coproporphyrinogen dehydrogenase</fullName>
            <ecNumber evidence="7">1.3.99.22</ecNumber>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ordered locus">Daci_1478</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="8" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>[4Fe-4S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:49883"/>
        </cofactor>
    </comment>
    <dbReference type="EC" id="1.3.99.22" evidence="7"/>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX34122.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012203408.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_1478"/>
    <dbReference type="PRIDE" id="A9BUL4"/>
    <dbReference type="EnsemblBacteria" id="ABX34122">
        <property type="protein sequence ID" value="ABX34122"/>
        <property type="gene ID" value="Daci_1478"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_1478"/>
    <dbReference type="eggNOG" id="COG0635">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_569637_0_0_4"/>
    <dbReference type="OMA" id="HFELLME"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051536">
        <property type="term" value="F:iron-sulfur cluster binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016491">
        <property type="term" value="F:oxidoreductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.20.20.70">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013785">
        <property type="entry name" value="Aldolase_TIM"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR034505">
        <property type="entry name" value="Coproporphyrinogen-III_oxidase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006638">
        <property type="entry name" value="Elp3/MiaB/NifB"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007197">
        <property type="entry name" value="rSAM"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR13932">
        <property type="entry name" value="PTHR13932"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04055">
        <property type="entry name" value="Radical_SAM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SFLD" id="SFLDS00029">
        <property type="entry name" value="Radical_SAM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00729">
        <property type="entry name" value="Elp3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51918">
        <property type="entry name" value="RADICAL_SAM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-0408">Iron</keyword>
    <keyword evidence="5" id="KW-0411">Iron-sulfur</keyword>
    <keyword evidence="3" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="7" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0949">S-adenosyl-L-methionine</keyword>
    <feature type="domain" description="Radical SAM core" evidence="6">
        <location>
            <begin position="1"/>
            <end position="235"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001966"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022691"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023004"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023014"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="PROSITE" id="PS51918"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="ABX34122.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="435" mass="50339" checksum="36FC2F1B525B718F" modified="2008-01-15" version="1">MNANFYIGIPYCLPTTPNHCGFCLFPTQDYGGNGAMLKYLDYLEKEAQMMACHLRHDRLSSVYVGGGTPNLLHAEDYIRLMNITRRIFGEPSEGVERTLEGIPQLFNHDKVQAIKEAGFNRVSMGVQQMSDRLIRYSGRRQTHEQVISALEEFNAARLSVNVDLIYGWPEQTLHDMLRDLREVCDLGVRHITLYQLNIAGRSDFSRQQRDLLPSFENTYEMYEAACSYLGSRGFRQATLYDWERIESEAGRFSHENAERYQYEQQLREFLQKDTEGVMAVTCNMVGIGYAAISGCMTWPNEGGPNWIQMNKRSMQGYFECIDAGILPVEKYFEYTPEDLRLVYIFQQLQTMKIDRTTYEQAFGTEVVQDYAPIWDELDARQWIEKSESTIRMVGLGRFLIPMIQSLFSHARLQEMRMGRDAIQAEGKRFIQISKG</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="84" xmlns="http://uniprot.org/uniprot">
    <accession>A9BUM7</accession>
    <name>A9BUM7_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="6">UDP-N-acetylmuramate--L-alanyl-gamma-D-glutamyl-meso-2,6-diaminoheptandioate ligase</fullName>
            <ecNumber evidence="6">6.3.2.45</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="6">Murein peptide ligase</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="6">UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="6" type="primary">mpl</name>
        <name evidence="10" type="ordered locus">Daci_1491</name>
    </gene>
    <organism evidence="10 11">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="10 11" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="11">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="11" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="11">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="6">Reutilizes the intact tripeptide L-alanyl-gamma-D-glutamyl-meso-diaminopimelate by linking it to UDP-N-acetylmuramate.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="6">
            <text>ATP + L-alanyl-gamma-D-glutamyl-meso-diaminoheptanedioate + UDP-N-acetyl-alpha-D-muramate = ADP + H(+) + phosphate + UDP-N-acetyl-alpha-D-muramoyl-L-alanyl-gamma-D-glutamyl-meso-2,6-diaminoheptanedioate</text>
            <dbReference type="Rhea" id="RHEA:29563"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:43474"/>
            <dbReference type="ChEBI" id="CHEBI:61401"/>
            <dbReference type="ChEBI" id="CHEBI:70757"/>
            <dbReference type="ChEBI" id="CHEBI:83905"/>
            <dbReference type="ChEBI" id="CHEBI:456216"/>
            <dbReference type="EC" id="6.3.2.45"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="6">
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </cofactor>
    </comment>
    <comment type="pathway">
        <text evidence="6">Cell wall biogenesis; peptidoglycan recycling.</text>
    </comment>
    <comment type="similarity">
        <text evidence="6">Belongs to the MurCDEF family. Mpl subfamily.</text>
    </comment>
    <dbReference type="EC" id="6.3.2.45" evidence="6"/>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX34135.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012203421.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_1491"/>
    <dbReference type="PRIDE" id="A9BUM7"/>
    <dbReference type="EnsemblBacteria" id="ABX34135">
        <property type="protein sequence ID" value="ABX34135"/>
        <property type="gene ID" value="Daci_1491"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_1491"/>
    <dbReference type="eggNOG" id="COG0773">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_028104_0_1_4"/>
    <dbReference type="OMA" id="SGIAWDH"/>
    <dbReference type="UniPathway" id="UPA00544"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0106418">
        <property type="term" value="F:UDP-N-acetylmuramate-L-alanyl-gamma-D-glutamyl-meso-2,6-diaminoheptanedioate ligase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0007049">
        <property type="term" value="P:cell cycle"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051301">
        <property type="term" value="P:cell division"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0071555">
        <property type="term" value="P:cell wall organization"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009252">
        <property type="term" value="P:peptidoglycan biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009254">
        <property type="term" value="P:peptidoglycan turnover"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008360">
        <property type="term" value="P:regulation of cell shape"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.1190.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.190.20">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_02020">
        <property type="entry name" value="Mpl"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005757">
        <property type="entry name" value="Mpl"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036565">
        <property type="entry name" value="Mur-like_cat_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004101">
        <property type="entry name" value="Mur_ligase_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036615">
        <property type="entry name" value="Mur_ligase_C_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013221">
        <property type="entry name" value="Mur_ligase_cen"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000713">
        <property type="entry name" value="Mur_ligase_N"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01225">
        <property type="entry name" value="Mur_ligase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02875">
        <property type="entry name" value="Mur_ligase_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08245">
        <property type="entry name" value="Mur_ligase_M"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53244">
        <property type="entry name" value="SSF53244"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53623">
        <property type="entry name" value="SSF53623"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01081">
        <property type="entry name" value="mpl"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="6" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="4 6" id="KW-0131">Cell cycle</keyword>
    <keyword evidence="1 6" id="KW-0132">Cell division</keyword>
    <keyword evidence="2 6" id="KW-0133">Cell shape</keyword>
    <keyword evidence="5 6" id="KW-0961">Cell wall biogenesis/degradation</keyword>
    <keyword evidence="6" id="KW-0436">Ligase</keyword>
    <keyword evidence="6" id="KW-0460">Magnesium</keyword>
    <keyword evidence="6" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="3 6" id="KW-0573">Peptidoglycan synthesis</keyword>
    <keyword evidence="11" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Mur_ligase" evidence="7">
        <location>
            <begin position="2"/>
            <end position="104"/>
        </location>
    </feature>
    <feature type="domain" description="Mur_ligase_M" evidence="9">
        <location>
            <begin position="120"/>
            <end position="314"/>
        </location>
    </feature>
    <feature type="domain" description="Mur_ligase_C" evidence="8">
        <location>
            <begin position="334"/>
            <end position="383"/>
        </location>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <begin position="122"/>
            <end position="128"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022618"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022960"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022984"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023306"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023316"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_02020"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="Pfam" id="PF01225"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="Pfam" id="PF02875"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="9">
        <source>
            <dbReference type="Pfam" id="PF08245"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="EMBL" id="ABX34135.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="479" mass="51025" checksum="B3D2D57CED94AA5F" modified="2008-01-15" version="1">MHIHILGICGTFMGGLAALAREAGHRVTGCDAGVYPPMSDQLRALGIDLIEGYGADQMALQPDMYVVGNVVSRARLPDGSPKFPLMEAILESGAPYTSGPQWLCEQVLHHPSCPRHVLAVAGTHGKTTTTSMLAWILECAGLAPGFLVGGVPLDFGVSARLGASSRPTPGQGPAGAEPVFVIEADEYDTAFFDKRSKFVHYRPRTAVLNNLEFDHADIFEDLGAIERQFHHLVRTVPASGRLVVNGIEESITRVLHQGCWSEVSSFGSVVSDFSAQGDPGAFDVLHRGHKVARLEWALTGEHNQLNALAAIAAAEHVGVTPAQACEALARFQNVKRRMELRGMAGGVSVYDDFAHHPTAIRTTLDGLRRKLGSQARILAVFEPRSNTMKLGTMKSQLPWALESADLVFCHTAGLDWDAAEALRPLGVGAGHKAQVAADIDTLIGQIRAAARTGDHVVCMSNGGFGGIHPKLLAALQAAG</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-05-25" version="54" xmlns="http://uniprot.org/uniprot">
    <accession>A9BUV7</accession>
    <name>A9BUV7_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="6">NLPA lipoprotein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ordered locus">Daci_1777</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="7" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Lipid-anchor</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the NlpA lipoprotein family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX34419.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012203704.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_1777"/>
    <dbReference type="EnsemblBacteria" id="ABX34419">
        <property type="protein sequence ID" value="ABX34419"/>
        <property type="gene ID" value="Daci_1777"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_1777"/>
    <dbReference type="eggNOG" id="COG1464">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_067080_3_0_4"/>
    <dbReference type="OMA" id="DFGQGMW"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016020">
        <property type="term" value="C:membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004872">
        <property type="entry name" value="Lipoprotein_NlpA"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30429">
        <property type="entry name" value="PTHR30429"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03180">
        <property type="entry name" value="Lipoprotein_9"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="6" id="KW-0449">Lipoprotein</keyword>
    <keyword evidence="4" id="KW-0472">Membrane</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 5" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="5">
        <location>
            <begin position="1"/>
            <end position="28"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5002736076" evidence="5">
        <location>
            <begin position="29"/>
            <end position="274"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004635"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00008973"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022729"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="ABX34419.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="274" mass="29784" checksum="C111510C90E87A66" modified="2008-01-15" version="1">MMTTTSPTLWPRLAAFLGAALLAGSALAAPLKIGVVPGIFADSVEAAAKEAKKQGLDVQVVEFTDWATPNVALDAGDIDLNYYQNSNYLANAARSKGFKFTSVQAGILSYLGLYSTRHKSLADLPTGAKVAIASDPVNVGRGLRLLQHAGLITLRPDTGLLGTQADIVSNPRKLQFVEIEGPQLARTTPDVDLAQGFPYFIIASKAFDASKGLAYTSYEDDSWAIQFVARSDRAADPRIARFLDIYKNSDVVRKTIHAFYLNDQKLYRLAWLKN</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="68" xmlns="http://uniprot.org/uniprot">
    <accession>A9BVE9</accession>
    <name>A9BVE9_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Response regulator receiver and ANTAR domain protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Daci_2378</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="4" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX35016.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012204298.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_2378"/>
    <dbReference type="PRIDE" id="A9BVE9"/>
    <dbReference type="EnsemblBacteria" id="ABX35016">
        <property type="protein sequence ID" value="ABX35016"/>
        <property type="gene ID" value="Daci_2378"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_2378"/>
    <dbReference type="eggNOG" id="COG3707">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_052982_0_0_4"/>
    <dbReference type="OMA" id="FSFMQGK"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003723">
        <property type="term" value="F:RNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005561">
        <property type="entry name" value="ANTAR"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011006">
        <property type="entry name" value="CheY-like_superfamily"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013587">
        <property type="entry name" value="Nitrate/nitrite_sensing"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010910">
        <property type="entry name" value="Nitrate/nitrite_sensing_bac"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03861">
        <property type="entry name" value="ANTAR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08376">
        <property type="entry name" value="NIT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM01012">
        <property type="entry name" value="ANTAR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52172">
        <property type="entry name" value="SSF52172"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50921">
        <property type="entry name" value="ANTAR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50906">
        <property type="entry name" value="NIT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="NIT" evidence="1">
        <location>
            <begin position="30"/>
            <end position="292"/>
        </location>
    </feature>
    <feature type="domain" description="ANTAR" evidence="2">
        <location>
            <begin position="350"/>
            <end position="411"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS50906"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS50921"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ABX35016.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="421" mass="45336" checksum="6999FB66330F5F95" modified="2008-01-15" version="1">MKTALNFLVAARQCEIGELEQLQRTSALVDLLSRLIHALQKERGLSNVFLASAGARGGPARLAQMAECDRMAAAARDGFERVDMQPGGAGLTGHPGHGARLFSRIAHVLQCLDALPALRERVASRALSPEAATALYIDLVAGLLAVVFEAADSAPEPGISRLLVALFNFMQGKEFAGQERATGVAAFGAGVSDAPRQQHWLHLIASQERCFQVFAEFAPPHSLALWQESSAADATLAVIERLRRVGCTAAAGAPLSVEMAEPWFDNCSQRMDALQTVEARLTAELQQQCQHRIADARAALQTLLQAPQALATTPVSATLAPGELQPPAARLGPQLDRSVMDLVQDQSQRLQAMQAELETVRATLTERKLLERAKGLLMARRQLSEGEAHKLLRQTAMNQNRRLADVAQAVLSMADLLPPAP</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="81" xmlns="http://uniprot.org/uniprot">
    <accession>A9BVI7</accession>
    <name>A9BVI7_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="11">DEAD/DEAH box helicase domain protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="11" type="ordered locus">Daci_2416</name>
    </gene>
    <organism evidence="11 12">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="11 12" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="12">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="12" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="12">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="6">Belongs to the DEAD box helicase family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX35054.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012204336.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_2416"/>
    <dbReference type="PRIDE" id="A9BVI7"/>
    <dbReference type="EnsemblBacteria" id="ABX35054">
        <property type="protein sequence ID" value="ABX35054"/>
        <property type="gene ID" value="Daci_2416"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_2416"/>
    <dbReference type="eggNOG" id="COG0513">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_003041_28_3_4"/>
    <dbReference type="OMA" id="VCADEAP"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016787">
        <property type="term" value="F:hydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003676">
        <property type="term" value="F:nucleic acid binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003724">
        <property type="term" value="F:RNA helicase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011545">
        <property type="entry name" value="DEAD/DEAH_box_helicase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014001">
        <property type="entry name" value="Helicase_ATP-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001650">
        <property type="entry name" value="Helicase_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000629">
        <property type="entry name" value="RNA-helicase_DEAD-box_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014014">
        <property type="entry name" value="RNA_helicase_DEAD_Q_motif"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00270">
        <property type="entry name" value="DEAD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00271">
        <property type="entry name" value="Helicase_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00487">
        <property type="entry name" value="DEXDc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00490">
        <property type="entry name" value="HELICc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00039">
        <property type="entry name" value="DEAD_ATP_HELICASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51192">
        <property type="entry name" value="HELICASE_ATP_BIND_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51194">
        <property type="entry name" value="HELICASE_CTER"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51195">
        <property type="entry name" value="Q_MOTIF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4 6" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="3 6 11" id="KW-0347">Helicase</keyword>
    <keyword evidence="2 6" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="1 6" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="12" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Q_MOTIF" evidence="10">
        <location>
            <begin position="1"/>
            <end position="29"/>
        </location>
    </feature>
    <feature type="domain" description="Helicase ATP-binding" evidence="8">
        <location>
            <begin position="32"/>
            <end position="214"/>
        </location>
    </feature>
    <feature type="domain" description="Helicase C-terminal" evidence="9">
        <location>
            <begin position="241"/>
            <end position="399"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="7">
        <location>
            <begin position="393"/>
            <end position="438"/>
        </location>
    </feature>
    <feature type="short sequence motif" description="Q motif" evidence="5">
        <location>
            <begin position="1"/>
            <end position="29"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="7">
        <location>
            <begin position="414"/>
            <end position="438"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022806"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00552"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="RuleBase" id="RU000492"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="PROSITE" id="PS51192"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="9">
        <source>
            <dbReference type="PROSITE" id="PS51194"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="10">
        <source>
            <dbReference type="PROSITE" id="PS51195"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="EMBL" id="ABX35054.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="438" mass="47058" checksum="5A83653F62B4B2AF" modified="2008-01-15" version="1">MNFASLGLSPALVSSLQDLGLVDPTPIQTQSIAPVLAGRDLWACAPTGSGKTAAYLLPLLQRWMDGGKAQGAQGGFVRTLTTLIVVPTRELAQQVGETLSDLGRALKQPPRIGVVYGGVSINPQMMMLRGSADFLVATPGRLLDLVEHNAVRLSAVRHLVLDEADRLLDLGFQDELQRVLALLPKQRQTLLFSATYPDAVQSLATGLLHDPVQARVDAAEGQDAASPQSITQRAIAVDRARRTQLLRQLVQGDTAAGTDPVTLERALVFVATRHTAELVAEKLYKAGIFATAFHGDLSQGARKEALADFKAKRWQVMITTDLAARGIDITQLPLVVNYDLPRSATDYVHRIGRTGRAGEDGTAISFVTPADQAHWALICKRNQLDLELEQLPGFEPTEPVPPPPVAQDGNGGIKGRRPSKKDKLRAAAAEAAESAKKN</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="65" xmlns="http://uniprot.org/uniprot">
    <accession>A9BVN2</accession>
    <name>A9BVN2_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="6">Protein TolA</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ordered locus">Daci_2461</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="7" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX35099.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012204380.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_2461"/>
    <dbReference type="PRIDE" id="A9BVN2"/>
    <dbReference type="EnsemblBacteria" id="ABX35099">
        <property type="protein sequence ID" value="ABX35099"/>
        <property type="gene ID" value="Daci_2461"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_2461"/>
    <dbReference type="eggNOG" id="COG0810">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_061525_1_0_4"/>
    <dbReference type="OMA" id="PYRSFKM"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0019534">
        <property type="term" value="F:toxin transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043213">
        <property type="term" value="P:bacteriocin transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014161">
        <property type="entry name" value="Tol-Pal_TolA"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006260">
        <property type="entry name" value="TonB/TolA_C"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR02794">
        <property type="entry name" value="tolA_full"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01352">
        <property type="entry name" value="tonB_Cterm"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3 5" id="KW-0472">Membrane</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1 5" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="2 5" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="21"/>
            <end position="40"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="4">
        <location>
            <begin position="46"/>
            <end position="297"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Pro residues" evidence="4">
        <location>
            <begin position="63"/>
            <end position="99"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="4">
        <location>
            <begin position="100"/>
            <end position="260"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="ABX35099.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="380" mass="41360" checksum="B620D78E5917C8CE" modified="2008-01-15" version="1">MPNLQDHDQFAPPRTRGRTRSWALAAAAHGLLVAAMLWTVRPPKQADEPMVEAEFWSTAAPAPALPVPAPPPPPAPEPVPQPPPPPPAPVIAPPPPPKPQAVDDDHEAEIALEKKRKIEQQKKERAEQAAREQREKERQERLDKEKADKAAKDKAEREKAEKAEKDRRDKLEQQKKDKAEQDRKDRLEQQKKDKAEKEKADKEKAARDKAEREKAEKADKEKAAKAEAEKKAAEDKRKKEQAAKEAREAKEAEARRLENIRRMQGLAGSGGSAGEGAGGSKSGGSGSSAAGPSAGYGAKVAARVKPNIVYPDAISGNPRAEVRVRTAPDGTITGATIAKSSGNKAWDDAVIRALQKTETLPRDIDGRVPSDLVIGFRPQD</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="63" xmlns="http://uniprot.org/uniprot">
    <accession>A9BVP6</accession>
    <name>A9BVP6_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="3">AMP-dependent synthetase and ligase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Daci_2771</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="4" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX35409.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_2771"/>
    <dbReference type="PRIDE" id="A9BVP6"/>
    <dbReference type="EnsemblBacteria" id="ABX35409">
        <property type="protein sequence ID" value="ABX35409"/>
        <property type="gene ID" value="Daci_2771"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_2771"/>
    <dbReference type="eggNOG" id="COG0318">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_000022_59_0_4"/>
    <dbReference type="OMA" id="QWAVWAA"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016874">
        <property type="term" value="F:ligase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.300.30">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.12780">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025110">
        <property type="entry name" value="AMP-bd_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045851">
        <property type="entry name" value="AMP-bd_C_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020845">
        <property type="entry name" value="AMP-binding_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000873">
        <property type="entry name" value="AMP-dep_Synth/Lig"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR042099">
        <property type="entry name" value="ANL_N_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00501">
        <property type="entry name" value="AMP-binding"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13193">
        <property type="entry name" value="AMP-binding_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00455">
        <property type="entry name" value="AMP_BINDING"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-0436">Ligase</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="AMP-binding" evidence="1">
        <location>
            <begin position="53"/>
            <end position="437"/>
        </location>
    </feature>
    <feature type="domain" description="AMP-binding_C" evidence="2">
        <location>
            <begin position="446"/>
            <end position="521"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF00501"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF13193"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ABX35409.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="536" mass="58484" checksum="568F52301577A001" modified="2008-01-15" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="82" xmlns="http://uniprot.org/uniprot">
    <accession>A9BW06</accession>
    <name>A9BW06_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Transcriptional regulator, DeoR family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ordered locus">Daci_3184</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="5" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX35822.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012205022.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_3184"/>
    <dbReference type="PRIDE" id="A9BW06"/>
    <dbReference type="EnsemblBacteria" id="ABX35822">
        <property type="protein sequence ID" value="ABX35822"/>
        <property type="gene ID" value="Daci_3184"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_3184"/>
    <dbReference type="eggNOG" id="COG1349">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_060699_3_1_4"/>
    <dbReference type="OMA" id="EYHACFL"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003700">
        <property type="term" value="F:DNA-binding transcription factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014036">
        <property type="entry name" value="DeoR_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001034">
        <property type="entry name" value="DeoR_HTH"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037171">
        <property type="entry name" value="NagB/RpiA_transferase-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036390">
        <property type="entry name" value="WH_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00455">
        <property type="entry name" value="DeoRC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08220">
        <property type="entry name" value="HTH_DeoR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00420">
        <property type="entry name" value="HTH_DEOR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF100950">
        <property type="entry name" value="SSF100950"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46785">
        <property type="entry name" value="SSF46785"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51000">
        <property type="entry name" value="HTH_DEOR_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0804">Transcription</keyword>
    <keyword evidence="1" id="KW-0805">Transcription regulation</keyword>
    <feature type="domain" description="HTH deoR-type" evidence="3">
        <location>
            <begin position="8"/>
            <end position="63"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023015"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023163"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="PROSITE" id="PS51000"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="ABX35822.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="269" mass="28742" checksum="4A204A6E80382F69" modified="2008-01-15" version="1">MQDQGNSSLKRRLQIVELARKTDEVRVEALSVLFGVSTVTIRNDLHYLEQQGYVVRAFGKARYNPALLKTAAEIPGAPAAAQGPAQAQVAQGALGWIEDDASVFLGSGRITHRVLPLLASRQGIALTLHDLAMVATARQFLDCAIHVTGGTLAGDEPGLIGPGAEAGLRARPLDICLFEICGIDDRNRLLCRDPGAARLYSAAVEHSTKAVALALDLDSTTGGHPVCDIAQIDGLCTHQDMEPGAFDLLAHHRLQATRKAEGRIEFART</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-01-19" version="45" xmlns="http://uniprot.org/uniprot">
    <accession>A9BW64</accession>
    <name>A9BW64_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">HeH domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_3242</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX35880.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_3242"/>
    <dbReference type="EnsemblBacteria" id="ABX35880">
        <property type="protein sequence ID" value="ABX35880"/>
        <property type="gene ID" value="Daci_3242"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_3242"/>
    <dbReference type="eggNOG" id="ENOG503157E">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_2492702_0_0_4"/>
    <dbReference type="OMA" id="PLLWENH"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.720.30">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025856">
        <property type="entry name" value="HeH/LEM_domain"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036361">
        <property type="entry name" value="SAP_dom_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12949">
        <property type="entry name" value="HeH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HeH" evidence="1">
        <location>
            <begin position="63"/>
            <end position="96"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF12949"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX35880.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="99" mass="10836" checksum="FABEEDF6780E5969" modified="2008-01-15" version="1">MGGASAPLLWENHMQDKKVWYEPHPVKPERKAELRKRGFQIIDAIFMPEGYENPADDGEPEGAKKATVAELRAALEAKGVEVPEGAKKADLQALLDAVA</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="70" xmlns="http://uniprot.org/uniprot">
    <accession>A9BWN8</accession>
    <name>A9BWN8_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="7">Histone family protein nucleoid-structuring protein H-NS</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ordered locus">Daci_3934</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="8" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Cytoplasm</location>
            <location evidence="1">Nucleoid</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the histone-like protein H-NS family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX36565.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012205759.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_3934"/>
    <dbReference type="PRIDE" id="A9BWN8"/>
    <dbReference type="EnsemblBacteria" id="ABX36565">
        <property type="protein sequence ID" value="ABX36565"/>
        <property type="gene ID" value="Daci_3934"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_3934"/>
    <dbReference type="eggNOG" id="COG2916">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_117503_5_1_4"/>
    <dbReference type="OMA" id="PAWIKDK"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009295">
        <property type="term" value="C:nucleoid"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030527">
        <property type="term" value="F:structural constituent of chromatin"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006355">
        <property type="term" value="P:regulation of transcription, DNA-templated"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027444">
        <property type="entry name" value="H-NS_C_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001801">
        <property type="entry name" value="Histone_HNS"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00816">
        <property type="entry name" value="Histone_HNS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00528">
        <property type="entry name" value="HNS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="4" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HNS" evidence="6">
        <location>
            <begin position="50"/>
            <end position="91"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="5">
        <location>
            <begin position="59"/>
            <end position="91"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004453"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00010610"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022490"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="SMART" id="SM00528"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="ABX36565.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="91" mass="10204" checksum="26C9D138D187AF7E" modified="2008-01-15" version="1">MNTTYKELLAQREALEAQIQAARKQEVSDVIAKIRGLVQDYGLTADDIFTARRAPSTVAPKFRNPETGDTWTGRGKPPAWIKDKDRAQFAI</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="71" xmlns="http://uniprot.org/uniprot">
    <accession>A9BWP3</accession>
    <name>A9BWP3_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="5">Lactoylglutathione lyase</fullName>
            <ecNumber evidence="5">4.4.1.5</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="9">Aldoketomutase</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="8">Glyoxalase I</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="7">Ketone-aldehyde mutase</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="10">Methylglyoxalase</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="11">S-D-lactoylglutathione methylglyoxal lyase</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="14" type="ordered locus">Daci_3939</name>
    </gene>
    <organism evidence="14 15">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="14 15" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="15">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="15" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="15">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>(R)-S-lactoylglutathione = glutathione + methylglyoxal</text>
            <dbReference type="Rhea" id="RHEA:19069"/>
            <dbReference type="ChEBI" id="CHEBI:17158"/>
            <dbReference type="ChEBI" id="CHEBI:57474"/>
            <dbReference type="ChEBI" id="CHEBI:57925"/>
            <dbReference type="EC" id="4.4.1.5"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="2">
            <name>Ni(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:49786"/>
        </cofactor>
    </comment>
    <comment type="pathway">
        <text evidence="3">Secondary metabolite metabolism; methylglyoxal degradation; (R)-lactate from methylglyoxal: step 1/2.</text>
    </comment>
    <comment type="similarity">
        <text evidence="4">Belongs to the glyoxalase I family.</text>
    </comment>
    <dbReference type="EC" id="4.4.1.5" evidence="5"/>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX36570.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_3939"/>
    <dbReference type="PRIDE" id="A9BWP3"/>
    <dbReference type="EnsemblBacteria" id="ABX36570">
        <property type="protein sequence ID" value="ABX36570"/>
        <property type="gene ID" value="Daci_3939"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_3939"/>
    <dbReference type="eggNOG" id="COG0346">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_046006_8_1_4"/>
    <dbReference type="OMA" id="NWGTESY"/>
    <dbReference type="UniPathway" id="UPA00619">
        <property type="reaction ID" value="UER00675"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004462">
        <property type="term" value="F:lactoylglutathione lyase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.10.180.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029068">
        <property type="entry name" value="Glyas_Bleomycin-R_OHBP_Dase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004360">
        <property type="entry name" value="Glyas_Fos-R_dOase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004361">
        <property type="entry name" value="Glyoxalase_1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018146">
        <property type="entry name" value="Glyoxalase_1_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037523">
        <property type="entry name" value="VOC"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00903">
        <property type="entry name" value="Glyoxalase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54593">
        <property type="entry name" value="SSF54593"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00068">
        <property type="entry name" value="glyox_I"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00934">
        <property type="entry name" value="GLYOXALASE_I_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51819">
        <property type="entry name" value="VOC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="6 14" id="KW-0456">Lyase</keyword>
    <keyword evidence="15" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="VOC" evidence="13">
        <location>
            <begin position="11"/>
            <end position="136"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="12">
        <location>
            <begin position="137"/>
            <end position="158"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00000817"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00001967"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00005008"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00010363"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00012081"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023239"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00030291"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00030537"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00030892"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00032460"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="ARBA" id="ARBA00033298"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="12">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="13">
        <source>
            <dbReference type="PROSITE" id="PS51819"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="14">
        <source>
            <dbReference type="EMBL" id="ABX36570.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="15">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="158" mass="17309" checksum="8BB583E09BC8439A" modified="2008-01-15" version="1">MAESRHNRGMRILHTMLRVGNFQRSIDFYTQVLGMQLLRTSENPEYKYSLAFLGFEGGNPAQAEIELTYNWGTESYDMGSAYGHIAIGVPDAYAACEKIKASGGNVTREAGPVKGGTTVIAFVTDPDGYKIELIQENSRAHAGTQPDGDAKFDPLRNS</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="65" xmlns="http://uniprot.org/uniprot">
    <accession>A9BWQ8</accession>
    <name>A9BWQ8_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Efflux transporter, RND family, MFP subunit</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Daci_3954</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="4" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX36585.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012205779.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_3954"/>
    <dbReference type="PRIDE" id="A9BWQ8"/>
    <dbReference type="EnsemblBacteria" id="ABX36585">
        <property type="protein sequence ID" value="ABX36585"/>
        <property type="gene ID" value="Daci_3954"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_3954"/>
    <dbReference type="eggNOG" id="COG0845">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_018816_1_2_4"/>
    <dbReference type="OMA" id="GIQDGAY"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016020">
        <property type="term" value="C:membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0022857">
        <property type="term" value="F:transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006143">
        <property type="entry name" value="RND_pump_MFP"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01730">
        <property type="entry name" value="RND_mfp"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="coiled-coil region" evidence="2">
        <location>
            <begin position="154"/>
            <end position="181"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00009477"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ABX36585.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="413" mass="43471" checksum="ACAC36BD4F19EC35" modified="2008-01-15" version="1">MKRRTGWLICLALLIAIGASVWRAASTRHSKQSAIAAATQPREMPVRVGPQEVVQLQPRQLQLTVPVSGVVQAVRSAVVKAYVAGELRGLQVREGDSVRKGQELARVDATEVEARWRQTRQQADAAQAQLQLSQRQHDNNQALVTQGFISTTALATSQSNLDAARANLAAAQAAADVARKSVTDSVLRSPMDGQVAQRLVQDGERVGVETRVLEIVDPSDLEVVAQLAPADSVRVQVGQQALLQVQGAGDDVAAVPARVVRINPSAQAGSRSVAVYLRVQAAPVNAGAAGRSIPIVRPGLYLQGSIVTGQTEQLAVPLTAVRTDQPQPYVQLLQPAGESDADKSLLRVQHRPVTLGSQSAQDGATWIAVSTGLQAGDRVLAGSVGGLRAGTAVQMQQMQQAPQSLAAPAPGAR</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="91" xmlns="http://uniprot.org/uniprot">
    <accession>A9BWR3</accession>
    <name>A9BWR3_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Two component transcriptional regulator, winged helix family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ordered locus">Daci_3959</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="6" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX36590.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012205784.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_3959"/>
    <dbReference type="PRIDE" id="A9BWR3"/>
    <dbReference type="EnsemblBacteria" id="ABX36590">
        <property type="protein sequence ID" value="ABX36590"/>
        <property type="gene ID" value="Daci_3959"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_3959"/>
    <dbReference type="eggNOG" id="COG0745">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_000445_30_1_4"/>
    <dbReference type="OMA" id="YIQTHIG"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000160">
        <property type="term" value="P:phosphorelay signal transduction system"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006355">
        <property type="term" value="P:regulation of transcription, DNA-templated"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd00383">
        <property type="entry name" value="trans_reg_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011006">
        <property type="entry name" value="CheY-like_superfamily"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001867">
        <property type="entry name" value="OmpR/PhoB-type_DNA-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001789">
        <property type="entry name" value="Sig_transdc_resp-reg_receiver"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR039420">
        <property type="entry name" value="WalR-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR48111">
        <property type="entry name" value="PTHR48111"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00072">
        <property type="entry name" value="Response_reg"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00486">
        <property type="entry name" value="Trans_reg_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00448">
        <property type="entry name" value="REC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00862">
        <property type="entry name" value="Trans_reg_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52172">
        <property type="entry name" value="SSF52172"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51755">
        <property type="entry name" value="OMPR_PHOB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50110">
        <property type="entry name" value="RESPONSE_REGULATORY"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="1" id="KW-0597">Phosphoprotein</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Response regulatory" evidence="3">
        <location>
            <begin position="2"/>
            <end position="116"/>
        </location>
    </feature>
    <feature type="domain" description="OmpR/PhoB-type" evidence="4">
        <location>
            <begin position="124"/>
            <end position="218"/>
        </location>
    </feature>
    <feature type="DNA-binding region" description="OmpR/PhoB-type" evidence="2">
        <location>
            <begin position="124"/>
            <end position="218"/>
        </location>
    </feature>
    <feature type="modified residue" description="4-aspartylphosphate" evidence="1">
        <location>
            <position position="51"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00169"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU01091"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="PROSITE" id="PS50110"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="PROSITE" id="PS51755"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="ABX36590.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="225" mass="25012" checksum="0233B0702809F60D" modified="2008-01-15" version="1">MRLLLVEDDLDLGNGVRIALGDHAMDVVWVRRLSDALRTLEQQSFEMVLLDLGLPDGDGISLLTRLRREWRRLPVLILSARDSLHDRLHGLDSGADDYLVKPFALVELVSRVRALARRSYGQGDGTLHLRGLSLHEPTRRVSVAGQNVELSRCEFDLLALLLRRMDRVVTRSGIEEEVIPGGSANGSNALEVHVSNLRRKIGPGFIRTVRGIGYVIDSQPMAPLS</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="79" xmlns="http://uniprot.org/uniprot">
    <accession>A9BWV3</accession>
    <name>A9BWV3_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Transcriptional regulator, LysR family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Daci_4307</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="4" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the LysR transcriptional regulatory family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX36938.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012206110.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_4307"/>
    <dbReference type="PRIDE" id="A9BWV3"/>
    <dbReference type="EnsemblBacteria" id="ABX36938">
        <property type="protein sequence ID" value="ABX36938"/>
        <property type="gene ID" value="Daci_4307"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_4307"/>
    <dbReference type="eggNOG" id="COG0583">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_039613_6_1_4"/>
    <dbReference type="OMA" id="PWRRDPV"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003700">
        <property type="term" value="F:DNA-binding transcription factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005119">
        <property type="entry name" value="LysR_subst-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000847">
        <property type="entry name" value="Tscrpt_reg_HTH_LysR"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036390">
        <property type="entry name" value="WH_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00126">
        <property type="entry name" value="HTH_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03466">
        <property type="entry name" value="LysR_substrate"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46785">
        <property type="entry name" value="SSF46785"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50931">
        <property type="entry name" value="HTH_LYSR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HTH lysR-type" evidence="2">
        <location>
            <begin position="4"/>
            <end position="61"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00009437"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS50931"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ABX36938.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="294" mass="31572" checksum="3CEAFDCDBF61452B" modified="2008-01-15" version="1">MREINLDRLRTLLTVADLGSFAAAAKVLHLAPPTVTLHVAQLEERLGTRLLHRAPAGVTATSAGSLLIDKARQLLAEADDLLQTVQRQIATRGGRVRLGASTGALAHLLPQALETLATRHPEIDVQVAVMTSEEALARLAAGSLDIGIVALPQPVLRGLQVQAWRQDPVLAFIPAAWKPPRHITPAWLAARPLIANDRGTRLSRQTAEWFAAGGARPQARIELNYNDAMKSLVAAGYGAALLPHEAGAPQPDPRITTRPLRPALSRALGIAHRKRPDDDATTVTIEVLMGMRGR</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="86" xmlns="http://uniprot.org/uniprot">
    <accession>A9BX89</accession>
    <name>A9BX89_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="9">ABC transporter related</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="9" type="ordered locus">Daci_5536</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="9 10" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="10" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX38165.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_5536"/>
    <dbReference type="PRIDE" id="A9BX89"/>
    <dbReference type="EnsemblBacteria" id="ABX38165">
        <property type="protein sequence ID" value="ABX38165"/>
        <property type="gene ID" value="Daci_5536"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_5536"/>
    <dbReference type="eggNOG" id="COG1127">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_000604_1_22_4"/>
    <dbReference type="OMA" id="PKYLFCD"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003593">
        <property type="entry name" value="AAA+_ATPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003439">
        <property type="entry name" value="ABC_transporter-like_ATP-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017871">
        <property type="entry name" value="ABC_transporter-like_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR030296">
        <property type="entry name" value="MlaF/Mkl"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43023:SF6">
        <property type="entry name" value="PTHR43023:SF6"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00005">
        <property type="entry name" value="ABC_tran"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00382">
        <property type="entry name" value="AAA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00211">
        <property type="entry name" value="ABC_TRANSPORTER_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50893">
        <property type="entry name" value="ABC_TRANSPORTER_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3 6" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="1" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="5" id="KW-0472">Membrane</keyword>
    <keyword evidence="2 6" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4" id="KW-1278">Translocase</keyword>
    <feature type="domain" description="ABC transporter" evidence="8">
        <location>
            <begin position="38"/>
            <end position="274"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="7">
        <location>
            <begin position="284"/>
            <end position="309"/>
        </location>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <begin position="70"/>
            <end position="77"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022967"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00434"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="PROSITE" id="PS50893"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="ABX38165.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="309" mass="33144" checksum="9E2BE64172374694" modified="2008-01-15" version="1">MFISWGGEQAAAPVCTIAALPANIYRPHHSMIPTASFVELRNVTFGYGERVILRDLSLQVPRGKVTALMGASGGGKTTVLRLIGGQQHAQQGQVLFDGKDVTTMDAAGLYAARRRMGMLFQFGALFTDMSVFDNVAFPLREHTDLPDELVRDIVLMKLHAVGLRGARDLMPSEISGGMARRVALARAIALDPELIMYDEPFAGLDPISLGTAAQLIRELNDAMGLTSILVSHDVEETFHVADHVVILGNGGVAAQGSPDEVRANPDPLVQQFIHARATGPVPFHYPGVSAEEDFGNPASSGKSNGRRHA</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="75" xmlns="http://uniprot.org/uniprot">
    <accession>A9BXJ5</accession>
    <name>A9BXJ5_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="7">Ribulose-bisphosphate carboxylase</fullName>
            <ecNumber evidence="7">4.1.1.39</ecNumber>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ordered locus">Daci_5642</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="8" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </cofactor>
    </comment>
    <comment type="similarity">
        <text evidence="4">Belongs to the RuBisCO large chain family.</text>
    </comment>
    <dbReference type="EC" id="4.1.1.39" evidence="7"/>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX38271.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012207440.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_5642"/>
    <dbReference type="PRIDE" id="A9BXJ5"/>
    <dbReference type="EnsemblBacteria" id="ABX38271">
        <property type="protein sequence ID" value="ABX38271"/>
        <property type="gene ID" value="Daci_5642"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_5642"/>
    <dbReference type="eggNOG" id="COG1850">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_031450_3_0_4"/>
    <dbReference type="OMA" id="AHFPFIA"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000287">
        <property type="term" value="F:magnesium ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016984">
        <property type="term" value="F:ribulose-bisphosphate carboxylase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015977">
        <property type="term" value="P:carbon fixation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.20.20.110">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.70.150">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR033966">
        <property type="entry name" value="RuBisCO"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020878">
        <property type="entry name" value="RuBisCo_large_chain_AS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000685">
        <property type="entry name" value="RuBisCO_lsu_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036376">
        <property type="entry name" value="RuBisCO_lsu_C_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017443">
        <property type="entry name" value="RuBisCO_lsu_fd_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036422">
        <property type="entry name" value="RuBisCO_lsu_N_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR42704">
        <property type="entry name" value="PTHR42704"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00016">
        <property type="entry name" value="RuBisCO_large"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02788">
        <property type="entry name" value="RuBisCO_large_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SFLD" id="SFLDS00014">
        <property type="entry name" value="RuBisCO"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51649">
        <property type="entry name" value="SSF51649"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54966">
        <property type="entry name" value="SSF54966"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00157">
        <property type="entry name" value="RUBISCO_LARGE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="7" id="KW-0456">Lyase</keyword>
    <keyword evidence="3" id="KW-0460">Magnesium</keyword>
    <keyword evidence="2" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="RuBisCO_large_N" evidence="6">
        <location>
            <begin position="18"/>
            <end position="132"/>
        </location>
    </feature>
    <feature type="domain" description="RuBisCO_large" evidence="5">
        <location>
            <begin position="143"/>
            <end position="419"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001946"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022842"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="RuleBase" id="RU003834"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="Pfam" id="PF00016"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="Pfam" id="PF02788"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="ABX38271.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="424" mass="45334" checksum="2D8954B47A8B36C0" modified="2008-01-15" version="1">MNNIAPRKEFTARYFVESSVASEKIAQVISGEQSSGTFLSLPGETDELKERSRARIASIKPLAPGLQPTLPSAYVGRHPHGGVFHRAEIEIAFPVANVGANLSSMLVTIAGNLYELGEVTGLRLLDLDLAPEYAAQFAGPAFGIPGTRRLAGVHGRPLIGTIIKPSIGLTPAQTAELVDSLCAAGIDFIKDDELIADPPYAPFDERLRAVMPVLQRHADRLGRMPMYAINISGSVDEMLRRHDAVLAAGGSCVMVSINWVGFSAVEHLRRHSQLPIHGHRNGWGAFTRHGGLGFSFQAYQKLWRLAGVDHLHCNGIRSKFWEPDDSVIASAKACLAPWAGLQPLMPVFSSGQWAGLAPDLYGALGAVDLMHLAGGGIIGHPDGIAAGVASMREGWEAAVAGVSLEHYADAHPALQRALVHFANL</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-01-19" version="71" xmlns="http://uniprot.org/uniprot">
    <accession>A9BXP1</accession>
    <name>A9BXP1_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="4">Type II secretion system core protein G</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="12" type="ordered locus">Daci_5689</name>
    </gene>
    <organism evidence="12 13">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="12 13" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="13">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="13" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="13">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="2">Cell inner membrane</location>
            <topology evidence="2">Single-pass membrane protein</topology>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Single-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="3">Belongs to the GSP G family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX38317.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012207486.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_5689"/>
    <dbReference type="EnsemblBacteria" id="ABX38317">
        <property type="protein sequence ID" value="ABX38317"/>
        <property type="gene ID" value="Daci_5689"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_5689"/>
    <dbReference type="eggNOG" id="COG2165">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_091705_2_1_4"/>
    <dbReference type="OMA" id="PWRNDYL"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015627">
        <property type="term" value="C:type II protein secretion system complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015628">
        <property type="term" value="P:protein secretion by the type II secretion system"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000983">
        <property type="entry name" value="Bac_GSPG_pilin"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012902">
        <property type="entry name" value="N_methyl_site"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045584">
        <property type="entry name" value="Pilin-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013545">
        <property type="entry name" value="T2SS_protein-GspG_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010054">
        <property type="entry name" value="Type2_sec_GspG"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07963">
        <property type="entry name" value="N_methyl"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08334">
        <property type="entry name" value="T2SSG"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00813">
        <property type="entry name" value="BCTERIALGSPG"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54523">
        <property type="entry name" value="SSF54523"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR02532">
        <property type="entry name" value="IV_pilin_GFxxxE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01710">
        <property type="entry name" value="typeII_sec_gspG"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00409">
        <property type="entry name" value="PROKAR_NTER_METHYL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="6" id="KW-0997">Cell inner membrane</keyword>
    <keyword evidence="5" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="9 10" id="KW-0472">Membrane</keyword>
    <keyword evidence="13" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="7 10" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="8 10" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="10">
        <location>
            <begin position="30"/>
            <end position="52"/>
        </location>
    </feature>
    <feature type="domain" description="T2SSG" evidence="11">
        <location>
            <begin position="50"/>
            <end position="157"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004167"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00004377"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00009984"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00020042"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022519"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="11">
        <source>
            <dbReference type="Pfam" id="PF08334"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="EMBL" id="ABX38317.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="13">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="158" mass="17384" checksum="F7DB9BB944839D64" modified="2008-01-15" version="1">MSNLLHRSMTSLPRRPLPALRTAVQRGFTLIELMVVLVIIGVLAALIVPNVLDRADDARVTAARTDITNISQALKLYRLDNQRYPTAEQGLQALIVRPTSGPLPNNWKPYLEKLPNDPWGRPYQYLNPGIKGPIDIMSFGADGQAGGEGKDADIGSWQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="47" xmlns="http://uniprot.org/uniprot">
    <accession>A9BXQ9</accession>
    <name>A9BXQ9_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">DUF1854 domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_5707</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX38335.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012207504.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_5707"/>
    <dbReference type="PRIDE" id="A9BXQ9"/>
    <dbReference type="EnsemblBacteria" id="ABX38335">
        <property type="protein sequence ID" value="ABX38335"/>
        <property type="gene ID" value="Daci_5707"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_5707"/>
    <dbReference type="eggNOG" id="COG1132">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_121383_1_0_4"/>
    <dbReference type="OMA" id="FSTPSTW"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015005">
        <property type="entry name" value="DUF1854"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08909">
        <property type="entry name" value="DUF1854"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="DUF1854" evidence="1">
        <location>
            <begin position="36"/>
            <end position="166"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF08909"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX38335.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="167" mass="18495" checksum="C029F19B3DC18700" modified="2008-01-15" version="1">MSNAQHSAAGADLSGVRMERNAHGRLVLILADGTRHESVVPVRAFPIAAPLEGLSLVSVDGKEALWVDHMDHLPAQARTLIEEDLAVREFVPVIQRIHKVSSYSTPSTWDLETDRGPVQLVLKAEEDIRRLSGRTHLMITSQDGVQFSVPDSTALDRTSRKLLERFL</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="57" xmlns="http://uniprot.org/uniprot">
    <accession>A9BXW0</accession>
    <name>A9BXW0_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ordered locus">Daci_1251</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="6" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Mitochondrion</location>
        </subcellularLocation>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX33895.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012203181.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_1251"/>
    <dbReference type="PRIDE" id="A9BXW0"/>
    <dbReference type="EnsemblBacteria" id="ABX33895">
        <property type="protein sequence ID" value="ABX33895"/>
        <property type="gene ID" value="Daci_1251"/>
    </dbReference>
    <dbReference type="GeneID" id="60685808"/>
    <dbReference type="KEGG" id="dac:Daci_1251"/>
    <dbReference type="eggNOG" id="COG1565">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_024840_1_0_4"/>
    <dbReference type="OMA" id="YYHPQRN"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008168">
        <property type="term" value="F:methyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0032259">
        <property type="term" value="P:methylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.12710">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003788">
        <property type="entry name" value="NDUFAF7"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038375">
        <property type="entry name" value="NDUFAF7_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029063">
        <property type="entry name" value="SAM-dependent_MTases_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR12049">
        <property type="entry name" value="PTHR12049"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02636">
        <property type="entry name" value="Methyltransf_28"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53335">
        <property type="entry name" value="SSF53335"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0489">Methyltransferase</keyword>
    <keyword evidence="4" id="KW-0496">Mitochondrion</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0808">Transferase</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004173"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022603"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023128"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="ABX33895.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="337" mass="37100" checksum="4A369F7BC0EC54C7" modified="2008-01-15" version="1">MALALYEPGLGYYANDTAKFGLMPSSGSDFVTAPEMSPVFGQLLAAQVAEALQRTHTREVWEFGAGTGALALQVLDELAALGVRPDRYTIVDLSGTLRARQQLRLVKYEGLVHWADALPERLEGVVIGNEVLDAMPVQLLVRKAGVWHERGVVLQPDGSLGWEDRPTQLRPPMEIEGEHDYLTEIHLQGEAFIRTLGERMARGAAFFIDYGFGESEYFHPQRHMGTLVCHRLHKVDDDPLAEVGLKDITAHVNFTGTAVAAQEAGFEVLGYTSQAHFLINCGLGPKLDALAQGPRAMATKLMMEHEMGELFKVIGLAKGVEPWDAMGFVRGDRTHRL</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="83" xmlns="http://uniprot.org/uniprot">
    <accession>A9BXX8</accession>
    <name>A9BXX8_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Transcriptional regulator, AsnC family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ordered locus">Daci_1269</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="6" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX33913.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012203199.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_1269"/>
    <dbReference type="PRIDE" id="A9BXX8"/>
    <dbReference type="EnsemblBacteria" id="ABX33913">
        <property type="protein sequence ID" value="ABX33913"/>
        <property type="gene ID" value="Daci_1269"/>
    </dbReference>
    <dbReference type="GeneID" id="60685829"/>
    <dbReference type="KEGG" id="dac:Daci_1269"/>
    <dbReference type="eggNOG" id="COG1522">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_091233_0_3_4"/>
    <dbReference type="OMA" id="GPSKLHM"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043565">
        <property type="term" value="F:sequence-specific DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006355">
        <property type="term" value="P:regulation of transcription, DNA-templated"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="CDD" id="cd00090">
        <property type="entry name" value="HTH_ARSR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011991">
        <property type="entry name" value="ArsR-like_HTH"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000485">
        <property type="entry name" value="AsnC-type_HTH_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011008">
        <property type="entry name" value="Dimeric_a/b-barrel"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019888">
        <property type="entry name" value="Tscrpt_reg_AsnC-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019887">
        <property type="entry name" value="Tscrpt_reg_AsnC/Lrp_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036390">
        <property type="entry name" value="WH_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01037">
        <property type="entry name" value="AsnC_trans_reg"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13404">
        <property type="entry name" value="HTH_AsnC-type"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00033">
        <property type="entry name" value="HTHASNC"/>
    </dbReference>
    <dbReference type="SMART" id="SM00344">
        <property type="entry name" value="HTH_ASNC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46785">
        <property type="entry name" value="SSF46785"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54909">
        <property type="entry name" value="SSF54909"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50956">
        <property type="entry name" value="HTH_ASNC_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0804">Transcription</keyword>
    <keyword evidence="1" id="KW-0805">Transcription regulation</keyword>
    <feature type="domain" description="HTH asnC-type" evidence="4">
        <location>
            <begin position="7"/>
            <end position="68"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023015"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023163"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="PROSITE" id="PS50956"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="ABX33913.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="160" mass="18131" checksum="BB97B11A27BF744E" modified="2008-01-15" version="1">MSATHNIDKLDRAILRRLQANGRETYDVIGEQVGLSPSAVLRRVKRLEDGGVIDRYVALVQPETVGLGLTAYLNVRLEKYTETSKRNPMDVFRASVQTWPEVVECVSLTGEMDYLMRVVVADMQHYTRFVMDTLLKHPSVQDCKTSFVMDRVKVTTAVPL</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="81" xmlns="http://uniprot.org/uniprot">
    <accession>A9BXY8</accession>
    <name>A9BXY8_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Transcriptional regulator, LysR family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Daci_1279</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="4" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the LysR transcriptional regulatory family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX33923.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012203209.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_1279"/>
    <dbReference type="PRIDE" id="A9BXY8"/>
    <dbReference type="EnsemblBacteria" id="ABX33923">
        <property type="protein sequence ID" value="ABX33923"/>
        <property type="gene ID" value="Daci_1279"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_1279"/>
    <dbReference type="eggNOG" id="COG0583">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_039613_6_1_4"/>
    <dbReference type="OMA" id="LYCLKER"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003700">
        <property type="term" value="F:DNA-binding transcription factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005119">
        <property type="entry name" value="LysR_subst-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000847">
        <property type="entry name" value="Tscrpt_reg_HTH_LysR"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017724">
        <property type="entry name" value="Tscrpt_reg_LysR"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036390">
        <property type="entry name" value="WH_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00126">
        <property type="entry name" value="HTH_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03466">
        <property type="entry name" value="LysR_substrate"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00039">
        <property type="entry name" value="HTHLYSR"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46785">
        <property type="entry name" value="SSF46785"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR03339">
        <property type="entry name" value="phn_lysR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50931">
        <property type="entry name" value="HTH_LYSR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HTH lysR-type" evidence="2">
        <location>
            <begin position="1"/>
            <end position="58"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00009437"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS50931"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ABX33923.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="293" mass="32831" checksum="E92EA679373B67E8" modified="2008-01-15" version="1">MFVTQLKSFFWVARLGSITQAARQLALSQPTVTTQIRALEEHYGVELFHRQGGRLSITDAGLRLLPQVEQLLLQTIQLESALRHSGDASQGQLRIGATAPYYVLDIVKRYQRRFERVEVAIVGGNSRQMVQALVDYQVDLATSSHLEGDPRLLRVELGQDPLALLVHRSHRLAQRTMVQASDLVHDTLILRERGSMTRQLTEQMLAAAGLAPRHIMEIASREAIREAVIRDMGISVFARHEASAHPDIVVLPFAGPVPRLPEYLYCLRERRQARLIAGFLEEAVPGGVLPDQM</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="61" xmlns="http://uniprot.org/uniprot">
    <accession>A9BXY9</accession>
    <name>A9BXY9_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="7">Permease for cytosine/purines uracil thiamine allantoin</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ordered locus">Daci_1280</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="8" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the purine-cytosine permease (2.A.39) family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX33924.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012203210.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_1280"/>
    <dbReference type="PRIDE" id="A9BXY9"/>
    <dbReference type="EnsemblBacteria" id="ABX33924">
        <property type="protein sequence ID" value="ABX33924"/>
        <property type="gene ID" value="Daci_1280"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_1280"/>
    <dbReference type="eggNOG" id="COG1953">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_021555_0_2_4"/>
    <dbReference type="OMA" id="YAICPWY"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0022857">
        <property type="term" value="F:transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001248">
        <property type="entry name" value="Pur-cyt_permease"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045225">
        <property type="entry name" value="Uracil/uridine/allantoin_perm"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30618">
        <property type="entry name" value="PTHR30618"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02133">
        <property type="entry name" value="Transp_cyt_pur"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5 6" id="KW-0472">Membrane</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 6" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="4 6" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="42"/>
            <end position="75"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="145"/>
            <end position="168"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="180"/>
            <end position="205"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="230"/>
            <end position="249"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="269"/>
            <end position="291"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="311"/>
            <end position="339"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="351"/>
            <end position="369"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="375"/>
            <end position="400"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="421"/>
            <end position="444"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="450"/>
            <end position="471"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00008974"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="ABX33924.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="483" mass="52348" checksum="E50240B787080A12" modified="2008-01-15" version="1">MDIRNPSPGLYNEDLAPTRDRRWGAFSIFNVWTSDVHSLWGYYLAASLFLLCGSFVNFLIAIGISSLVIFFLMNLVGYAGEKTGVPYPVLARASFGVWGANLAALVRAVVACFWYGAQTAAASGAMVALLVRNDALLSFHQTTHWLGHSGLEVICYVVIWALQLLIIQRGMETVRRFQDWAGPAVWIAMLVLAIGLCVKAGGFSFDHGIPMDVLLDKTKDAGVSGAPGSFWALMAVGATWITYFAALYLNFCDFSRYAKNKEAVAKGNLWGLPVNLIAFSLVAGITTIAAFKVYGEVLLHPEQISAKFDSWVLALLAAVTFAVATLGINVVANFVSAAFDISNVFPKRIDFKRGGYIAALIALALYPFAPWEGGAAHFVNAIGATMGPLLGIILVDYYLVAKGNINVAALYDEHGEYRYEGGWNVNALIATGIGSVFSTILPNFTSLLPVWWGTYGWFFGVLIGGGVYWVMATLRPRRIPAAA</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="64" xmlns="http://uniprot.org/uniprot">
    <accession>A9BXZ1</accession>
    <name>A9BXZ1_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="4">2-aminoethylphosphonate ABC transport system, 1-aminoethylphosphonate-binding protein component</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ordered locus">Daci_1282</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="5" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX33926.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012203212.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_1282"/>
    <dbReference type="PRIDE" id="A9BXZ1"/>
    <dbReference type="EnsemblBacteria" id="ABX33926">
        <property type="protein sequence ID" value="ABX33926"/>
        <property type="gene ID" value="Daci_1282"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_1282"/>
    <dbReference type="eggNOG" id="COG1840">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_026974_0_1_4"/>
    <dbReference type="OMA" id="QADAVWG"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017663">
        <property type="entry name" value="ABC_PhnS2_put"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR026045">
        <property type="entry name" value="Ferric-bd"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF002825">
        <property type="entry name" value="CfbpA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR03261">
        <property type="entry name" value="phnS2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0408">Iron</keyword>
    <keyword evidence="2" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1 3" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="3">
        <location>
            <begin position="1"/>
            <end position="30"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5002732649" evidence="3">
        <location>
            <begin position="31"/>
            <end position="347"/>
        </location>
    </feature>
    <feature type="binding site" evidence="2">
        <location>
            <position position="234"/>
        </location>
        <ligand>
            <name>Fe cation</name>
            <dbReference type="ChEBI" id="CHEBI:24875"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022729"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="PIRSR" id="PIRSR002825-1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="ABX33926.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="347" mass="38114" checksum="630A447FA59372B0" modified="2008-01-15" version="1">MRHTLASLGRRLAIASAALTVASFAPLAHAAKTELLVYSALEADQIKAYKSGFEKAHPEIELKFVRDSTGIITARLLAEKANPQADVIWGVAATSLMLLDKQGMLQPYAPKGLDKVRANMRDPRAQPTWVGMDLWSSAICFNTVEAGKRKLPVPASWADLVRPEFKGTITMPHPASSGTGYLMVAAWLQIMGEEKGWAYMDGLHQNMGVYTHSGSKPCRQAGAGEFPVGLSFEYRASKTKKDGAPIDIVFPQEGLGWDVEATAILKTSKKQEAAKALADWAVTPEANKLYAANFAVLALPEAQEKLEFIPADLEKRLAKNDFNWAADNRDRILAEWSRRYEAKAEKK</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="83" xmlns="http://uniprot.org/uniprot">
    <accession>A9BYA0</accession>
    <name>A9BYA0_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="11">ABC transporter related</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="11" type="ordered locus">Daci_1595</name>
    </gene>
    <organism evidence="11 12">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="11 12" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="12">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="12" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="12">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX34239.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012203524.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_1595"/>
    <dbReference type="PRIDE" id="A9BYA0"/>
    <dbReference type="EnsemblBacteria" id="ABX34239">
        <property type="protein sequence ID" value="ABX34239"/>
        <property type="gene ID" value="Daci_1595"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_1595"/>
    <dbReference type="eggNOG" id="COG1120">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="eggNOG" id="COG2453">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_570904_0_0_4"/>
    <dbReference type="OMA" id="PHELRDW"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008138">
        <property type="term" value="F:protein tyrosine/serine/threonine phosphatase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006470">
        <property type="term" value="P:protein dephosphorylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.190.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003593">
        <property type="entry name" value="AAA+_ATPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003439">
        <property type="entry name" value="ABC_transporter-like_ATP-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000340">
        <property type="entry name" value="Dual-sp_phosphatase_cat-dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029021">
        <property type="entry name" value="Prot-tyrosine_phosphatase-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016130">
        <property type="entry name" value="Tyr_Pase_AS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000387">
        <property type="entry name" value="Tyr_Pase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020422">
        <property type="entry name" value="TYR_PHOSPHATASE_DUAL_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00005">
        <property type="entry name" value="ABC_tran"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00782">
        <property type="entry name" value="DSPc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00382">
        <property type="entry name" value="AAA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00195">
        <property type="entry name" value="DSPc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52799">
        <property type="entry name" value="SSF52799"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50893">
        <property type="entry name" value="ABC_TRANSPORTER_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00383">
        <property type="entry name" value="TYR_PHOSPHATASE_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50056">
        <property type="entry name" value="TYR_PHOSPHATASE_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4 8" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="1" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="3" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="7" id="KW-0472">Membrane</keyword>
    <keyword evidence="2 8" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="5" id="KW-0904">Protein phosphatase</keyword>
    <keyword evidence="12" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="6" id="KW-1278">Translocase</keyword>
    <feature type="domain" description="ABC transporter" evidence="10">
        <location>
            <begin position="7"/>
            <end position="240"/>
        </location>
    </feature>
    <feature type="domain" description="TYR_PHOSPHATASE_2" evidence="9">
        <location>
            <begin position="429"/>
            <end position="493"/>
        </location>
    </feature>
    <feature type="binding site" evidence="8">
        <location>
            <begin position="39"/>
            <end position="46"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022912"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022967"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00434"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="9">
        <source>
            <dbReference type="PROSITE" id="PS50056"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="10">
        <source>
            <dbReference type="PROSITE" id="PS50893"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="EMBL" id="ABX34239.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="507" mass="54149" checksum="97E9F178013F5E56" modified="2008-01-15" version="1">MNQDYSLQVAGLGASFGARVILAEVDFALPARGVTVLLGPSGSGKSTLLRTLADLNAANPRFRRWGSTRYAGQPWRSGLQAPRLVQQQARLMMASTFDAIVELARPRLKLVPHELRDWCRAQVQAFGFPELALMFDQPALQLSPVQQRAVAILREALAEPALLMVDEPTAELEGYEAFVLLELLRQVAQRSAVLMSTHHQQHAQAVAQDMLLLAGGRIAEAQSMEAFQRAPLSLAGQQFLRTGSCAVASPDARAEDLEEGVPLPPPLPAAAVAAISEFLSDAVAAEPASEPMPAPALAPEPVPVPASMPAPVSAPTPTPAAAAAARPRAVNPAVLVDWQPLAADPQAVPASRGPNGFAWLVPGRLAGAPQPGVVQSMDFDLKALRGCGVTVLITLTENDLPQEPLQRHGLRNLHLPVRDHESPTVAQIQMLLARMSAMLRAGEVLAVHCLAGLGRTGTVLAAWLVREGLTADEALRRVRLIDAQYVQSQAQEDLLYAYEVALLLKMG</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="81" xmlns="http://uniprot.org/uniprot">
    <accession>A9BYG1</accession>
    <name>A9BYG1_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Transcriptional regulator, LysR family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Daci_1864</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="4" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the LysR transcriptional regulatory family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX34504.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012203789.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_1864"/>
    <dbReference type="PRIDE" id="A9BYG1"/>
    <dbReference type="EnsemblBacteria" id="ABX34504">
        <property type="protein sequence ID" value="ABX34504"/>
        <property type="gene ID" value="Daci_1864"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_1864"/>
    <dbReference type="eggNOG" id="COG0583">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_039613_6_2_4"/>
    <dbReference type="OMA" id="LSCGGCE"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003700">
        <property type="term" value="F:DNA-binding transcription factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005119">
        <property type="entry name" value="LysR_subst-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000847">
        <property type="entry name" value="Tscrpt_reg_HTH_LysR"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036390">
        <property type="entry name" value="WH_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00126">
        <property type="entry name" value="HTH_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03466">
        <property type="entry name" value="LysR_substrate"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00039">
        <property type="entry name" value="HTHLYSR"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46785">
        <property type="entry name" value="SSF46785"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50931">
        <property type="entry name" value="HTH_LYSR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HTH lysR-type" evidence="2">
        <location>
            <begin position="1"/>
            <end position="58"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00009437"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS50931"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ABX34504.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="294" mass="32069" checksum="8E29FD3EFF5CB4E9" modified="2008-01-15" version="1">MTFTQLEVFAALARAGSFSRAAALLGITQSAVSHALRALEGELQVQLVRREGPHSPLTDAGTRLLQRANDILQQKEALRQEADAERGMARGTLRVASFGATSSLRLLPPLITEYRRRQPAVLVQIDEQNDDTVVKWLLERRVEIGFVVLPDERFETVPLVEDELVALLPASHRLAAQRSIRAADLQGEAFVRTSAGSGAHIDRFLAEAGAQPAAIYHFEQMSSMQGFVAQGHAIAIAARLAVPEQAPEGMVYRSLSPRQRRVTGLAVRSMERLSPAAAGFVALAREMAKKKCFG</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="46" xmlns="http://uniprot.org/uniprot">
    <accession>A9BYJ1</accession>
    <name>A9BYJ1_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_1894</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX34534.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012203819.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_1894"/>
    <dbReference type="PRIDE" id="A9BYJ1"/>
    <dbReference type="EnsemblBacteria" id="ABX34534">
        <property type="protein sequence ID" value="ABX34534"/>
        <property type="gene ID" value="Daci_1894"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_1894"/>
    <dbReference type="eggNOG" id="COG1506">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_619514_0_0_4"/>
    <dbReference type="OMA" id="HGQSWGG"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.1820">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029058">
        <property type="entry name" value="AB_hydrolase"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53474">
        <property type="entry name" value="SSF53474"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="1">
        <location>
            <begin position="1"/>
            <end position="23"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5002736156" evidence="1">
        <location>
            <begin position="24"/>
            <end position="462"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX34534.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="462" mass="48811" checksum="59F46B1585179870" modified="2008-01-15" version="1">MQASAYFPLRPASASLLAALALAGCGGGSAVLHGPVTSIETAPKSTACPAEIPAGVSCWAGQDSKGAYYLIAKPAQWNGTLVLHAHGGPDLAAPTADRAAEDLVRWSIMVRAGYAWAGSTYRQGGVEVRAAAEDTERLRGIFRQHVAKPQRTILHGQSWGAGVAAKGAEMFNEQTVGERPYDGVLLTSGVLGGGTHAYDFRTDLRVVYQYLCGNHPRPNEPQYALNLGLPADAKMRQADVALRVNECLALDKPAAQRTAAQQAKIDTITKVIKIPESAIQSHMNWGTMHFQDISAKRTGGASPFGNEGAVYAGSADDAALNAGVLRYRADPAAYRKFADDTDPVGRIGVPVLSAKWISDPTAFVELDARFRAVMQQGGSGDRLVQTFTRQGTHSYISDATYPTLMTALMQWVEAGVKPTAAGIAAACVGNEAKFGVGCSFDAAYVPAALGARVPERARPSLQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="61" xmlns="http://uniprot.org/uniprot">
    <accession>A9BYR0</accession>
    <name>A9BYR0_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">PG_binding_3 domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_1963</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX34603.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_1963"/>
    <dbReference type="CAZy" id="GH108">
        <property type="family name" value="Glycoside Hydrolase Family 108"/>
    </dbReference>
    <dbReference type="PRIDE" id="A9BYR0"/>
    <dbReference type="EnsemblBacteria" id="ABX34603">
        <property type="protein sequence ID" value="ABX34603"/>
        <property type="gene ID" value="Daci_1963"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_1963"/>
    <dbReference type="eggNOG" id="COG3926">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_082693_1_2_4"/>
    <dbReference type="OMA" id="RYIRICE"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008565">
        <property type="entry name" value="DUF847"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023346">
        <property type="entry name" value="Lysozyme-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018537">
        <property type="entry name" value="Peptidoglycan-bd_3"/>
    </dbReference>
    <dbReference type="Pfam" id="PF05838">
        <property type="entry name" value="Glyco_hydro_108"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF09374">
        <property type="entry name" value="PG_binding_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53955">
        <property type="entry name" value="SSF53955"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="PG_binding_3" evidence="1">
        <location>
            <begin position="98"/>
            <end position="163"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF09374"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX34603.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="168" mass="18328" checksum="553CB716A11C6049" modified="2008-01-15" version="1">MSDFLSAFENALMNEGGYQLTNVSGDKGGMTYAGIARNRWPNWSGWDAIDAGGRPAADAVRAFYKQNFWDVMRLDDVSSQVIARHLFDFGVNAGTGTAVKIAQVVAGVTPDGAVGPLTLAALNMADPELFSARYTIAKMARYRDIVTRDRSQSKFLLGWLNRTLKEAA</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="76" xmlns="http://uniprot.org/uniprot">
    <accession>A9BYR6</accession>
    <name>A9BYR6_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="4">Aminotransferase</fullName>
            <ecNumber evidence="4">2.6.1.-</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="6" type="ordered locus">Daci_2171</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="7" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="1 4">
            <name>pyridoxal 5'-phosphate</name>
            <dbReference type="ChEBI" id="CHEBI:597326"/>
        </cofactor>
    </comment>
    <comment type="subunit">
        <text evidence="3">Homodimer.</text>
    </comment>
    <comment type="similarity">
        <text evidence="2 4">Belongs to the class-I pyridoxal-phosphate-dependent aminotransferase family.</text>
    </comment>
    <dbReference type="EC" id="2.6.1.-" evidence="4"/>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX34811.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_2171"/>
    <dbReference type="PRIDE" id="A9BYR6"/>
    <dbReference type="EnsemblBacteria" id="ABX34811">
        <property type="protein sequence ID" value="ABX34811"/>
        <property type="gene ID" value="Daci_2171"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_2171"/>
    <dbReference type="eggNOG" id="COG1448">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_032440_1_2_4"/>
    <dbReference type="OMA" id="WDQNKRQ"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030170">
        <property type="term" value="F:pyridoxal phosphate binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008483">
        <property type="term" value="F:transaminase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:1901605">
        <property type="term" value="P:alpha-amino acid metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009058">
        <property type="term" value="P:biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.640.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.1150.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004839">
        <property type="entry name" value="Aminotransferase_I/II"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000796">
        <property type="entry name" value="Asp_trans"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004838">
        <property type="entry name" value="NHTrfase_class1_PyrdxlP-BS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015424">
        <property type="entry name" value="PyrdxlP-dep_Trfase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015421">
        <property type="entry name" value="PyrdxlP-dep_Trfase_major"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015422">
        <property type="entry name" value="PyrdxlP-dep_Trfase_small"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11879">
        <property type="entry name" value="PTHR11879"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00155">
        <property type="entry name" value="Aminotran_1_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00799">
        <property type="entry name" value="TRANSAMINASE"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53383">
        <property type="entry name" value="SSF53383"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00105">
        <property type="entry name" value="AA_TRANSFER_CLASS_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4 6" id="KW-0032">Aminotransferase</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4 6" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Aminotran_1_2" evidence="5">
        <location>
            <begin position="27"/>
            <end position="393"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001933"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00007441"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00011738"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="RuleBase" id="RU000481"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="Pfam" id="PF00155"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="ABX34811.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="401" mass="43765" checksum="DD3DE96648D1B262" modified="2008-01-15" version="1">MFSHVPPYPGDPILSLMEAFQQDPRADKVSLSIGLYFDEAGRLPVLDSVRQAGDALAREQSPSGYLPIEGIAPYRQLVQNLVFGAQHEAVRAQRIATVQTLGGSGALKLGADFIKHYFPDAEVWLSDPTWDNHLAIFQGAGLRTHSYPYYDAATGSLRFDAMLQTLRGLPSGSVVLLHASCHNPTGVDLSREQWQQLIPVIVERGLIPFVDMAYQGFGDGLDEDAWSVRALADAGAQAFVANSFSKNFSLYGERVGGLSVVCSDAATAGNVLGQLKATVRSNYSSPPTRGARLVQQVLASPELSAQWAQELAQMRGRIKDMRAQLHGALHERFGERRDFGFLLTQRGMFSYTGISEPQVHRLRDEHGVYLIRSGRMCMSGLSGANVQYVADAIATVLEAPQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="74" xmlns="http://uniprot.org/uniprot">
    <accession>A9BYT5</accession>
    <name>A9BYT5_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="10">Glycosyl transferase family 39</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="10" type="ordered locus">Daci_2190</name>
    </gene>
    <organism evidence="10 11">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="10 11" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="11">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="11" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="11">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX34830.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_2190"/>
    <dbReference type="CAZy" id="GT83">
        <property type="family name" value="Glycosyltransferase Family 83"/>
    </dbReference>
    <dbReference type="PRIDE" id="A9BYT5"/>
    <dbReference type="EnsemblBacteria" id="ABX34830">
        <property type="protein sequence ID" value="ABX34830"/>
        <property type="gene ID" value="Daci_2190"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_2190"/>
    <dbReference type="eggNOG" id="COG1807">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_019200_3_0_4"/>
    <dbReference type="OMA" id="HKPPLFY"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016757">
        <property type="term" value="F:glycosyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038731">
        <property type="entry name" value="RgtA/B/C-like"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13231">
        <property type="entry name" value="PMT_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="3" id="KW-0328">Glycosyltransferase</keyword>
    <keyword evidence="7 8" id="KW-0472">Membrane</keyword>
    <keyword evidence="11" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4 10" id="KW-0808">Transferase</keyword>
    <keyword evidence="5 8" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="6 8" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="28"/>
            <end position="49"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="106"/>
            <end position="127"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="139"/>
            <end position="156"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="192"/>
            <end position="221"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="233"/>
            <end position="252"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="283"/>
            <end position="305"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="317"/>
            <end position="338"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="344"/>
            <end position="365"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="377"/>
            <end position="398"/>
        </location>
    </feature>
    <feature type="domain" description="PMT_2" evidence="9">
        <location>
            <begin position="85"/>
            <end position="248"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022676"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="9">
        <source>
            <dbReference type="Pfam" id="PF13231"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="EMBL" id="ABX34830.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="541" mass="58932" checksum="EA5347E1300FF926" modified="2008-01-15" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="84" xmlns="http://uniprot.org/uniprot">
    <accession>A9BYW9</accession>
    <name>A9BYW9_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Transcriptional regulator, GntR family with aminotransferase domain</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ordered locus">Daci_2224</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="5" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">In the C-terminal section; belongs to the class-I pyridoxal-phosphate-dependent aminotransferase family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX34864.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_2224"/>
    <dbReference type="PRIDE" id="A9BYW9"/>
    <dbReference type="EnsemblBacteria" id="ABX34864">
        <property type="protein sequence ID" value="ABX34864"/>
        <property type="gene ID" value="Daci_2224"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_2224"/>
    <dbReference type="eggNOG" id="COG1167">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_017584_0_1_4"/>
    <dbReference type="OMA" id="DFPTLAW"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003700">
        <property type="term" value="F:DNA-binding transcription factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030170">
        <property type="term" value="F:pyridoxal phosphate binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008483">
        <property type="term" value="F:transaminase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009058">
        <property type="term" value="P:biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd07377">
        <property type="entry name" value="WHTH_GntR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.640.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004839">
        <property type="entry name" value="Aminotransferase_I/II"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015424">
        <property type="entry name" value="PyrdxlP-dep_Trfase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015421">
        <property type="entry name" value="PyrdxlP-dep_Trfase_major"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000524">
        <property type="entry name" value="Tscrpt_reg_HTH_GntR"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036390">
        <property type="entry name" value="WH_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00155">
        <property type="entry name" value="Aminotran_1_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00392">
        <property type="entry name" value="GntR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00035">
        <property type="entry name" value="HTHGNTR"/>
    </dbReference>
    <dbReference type="SMART" id="SM00345">
        <property type="entry name" value="HTH_GNTR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46785">
        <property type="entry name" value="SSF46785"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53383">
        <property type="entry name" value="SSF53383"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50949">
        <property type="entry name" value="HTH_GNTR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-0032">Aminotransferase</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="HTH gntR-type" evidence="3">
        <location>
            <begin position="16"/>
            <end position="84"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="82"/>
            <end position="105"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00005384"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="PROSITE" id="PS50949"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="ABX34864.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="510" mass="55032" checksum="4D800AE054AAE384" modified="2008-01-15" version="1">MADQLKSAFTRHAGAAPGARTLHEWLKSQVADGSLAVGARLPSTRALALDLGVSRTTVTAAYEQLAAEGYLETAPGSRARVAAGAAQRSRARSMPAAAQQHGRPRLSSYGQRVDALASALPPAAGDGGPAPIDFLYGALAFDDFPTLAWRRAYNRAIVQRQSSLSYDAPEGEPALRMALQGYLRRARGLVCSADQIVVVQGSQQAIDLCARVLVDPGETVLMEEPCYLMARRVFEAQGACLQEMAVDEQGLDTSALAGRQARLAYVTPSHQFPLGGVLPIGRRQQLLAWARATGAWILEDDYDGEFRYGLRPIDALQSIDEVGCVIHVGTFSKALSPQMRMGYLVLPPSLVPVFREARRLADRHAPRLDQLVLAALIEDGSYERHVRAARRRNEGRRAALLQALERHLPGAVQVEGSASGLHVVAWVPAVHQRDEIALVRLARERGVGVRPISPLYAAGDAHRRQSCAGLVLGYASLQPQAIEQGVRRLAGVVRDGQKKGGAFEAPPCRR</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="79" xmlns="http://uniprot.org/uniprot">
    <accession>A9BYZ3</accession>
    <name>A9BYZ3_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">(2Fe-2S)-binding domain protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_2248</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX34888.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012204171.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="SMR" id="A9BYZ3"/>
    <dbReference type="STRING" id="398578.Daci_2248"/>
    <dbReference type="PRIDE" id="A9BYZ3"/>
    <dbReference type="EnsemblBacteria" id="ABX34888">
        <property type="protein sequence ID" value="ABX34888"/>
        <property type="gene ID" value="Daci_2248"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_2248"/>
    <dbReference type="eggNOG" id="COG2080">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_052511_3_1_4"/>
    <dbReference type="OMA" id="QEADDVW"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051536">
        <property type="term" value="F:iron-sulfur cluster binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016491">
        <property type="term" value="F:oxidoreductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd00207">
        <property type="entry name" value="fer2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.10.20.30">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002888">
        <property type="entry name" value="2Fe-2S-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036884">
        <property type="entry name" value="2Fe-2S-bd_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036010">
        <property type="entry name" value="2Fe-2S_ferredoxin-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001041">
        <property type="entry name" value="2Fe-2S_ferredoxin-type"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012675">
        <property type="entry name" value="Beta-grasp_dom_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00111">
        <property type="entry name" value="Fer2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01799">
        <property type="entry name" value="Fer2_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47741">
        <property type="entry name" value="SSF47741"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54292">
        <property type="entry name" value="SSF54292"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51085">
        <property type="entry name" value="2FE2S_FER_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="2Fe-2S ferredoxin-type" evidence="1">
        <location>
            <begin position="1"/>
            <end position="77"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS51085"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX34888.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="158" mass="16691" checksum="3D57363E83C7D3D7" modified="2008-01-15" version="1">MNVQLTVNGRAQRIDVPPNTLLVHALREHLRLTGTHVGCDTSQCGACTVIVDGHAVKSCAMLAVQAEGCEVRTIEGLADIDGGLHPMQAAFKECHGLQCGFCTPGMVMSAVDLCQRQPCASDREIREALEGNLCRCTGYQNIVAAVKKGSQAMAGPAT</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="44" xmlns="http://uniprot.org/uniprot">
    <accession>A9BZ87</accession>
    <name>A9BZ87_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Daci_2549</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="2" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX35187.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012204466.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_2549"/>
    <dbReference type="PRIDE" id="A9BZ87"/>
    <dbReference type="EnsemblBacteria" id="ABX35187">
        <property type="protein sequence ID" value="ABX35187"/>
        <property type="gene ID" value="Daci_2549"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_2549"/>
    <dbReference type="eggNOG" id="ENOG502Z7IA">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_856962_0_0_4"/>
    <dbReference type="OMA" id="RTGNQHP"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015004">
        <property type="entry name" value="MesX"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08908">
        <property type="entry name" value="DUF1852"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF034367">
        <property type="entry name" value="DUF1852"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ABX35187.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="327" mass="37646" checksum="8A0EB02301680243" modified="2008-01-15" version="1">MNAELHFSLKSIRFDENYHPSDSTRITTNFANLARGTSRQQNLRHTLRMIDNRFNELAHWDNPTGDRYSVELDIISVDMGMGAEMGSGVFPLIEILKTSILDRKSNKRIAGIAGNNFSSYVRDYDFSVLLPEYNINRQEFSTPDDFGDLHGKLFKQFARSSTYREHFNKPPVICISASISKTYQRTGNQHPVLGAEYQQNELSSTDRYFGKMGMQVRFFMPPNSVAPLAFYFQGDLLADYTNLELIGTISTMETFQKIYRPEIYNANCAAGKIYQPSLKNHDYSLTQIVYDREERSQLAIKQGRFAQEHFIKPYRNVLEQWAADCAL</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="78" xmlns="http://uniprot.org/uniprot">
    <accession>A9BZP4</accession>
    <name>A9BZP4_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="7">Acetyl-CoA acetyltransferase</fullName>
            <ecNumber evidence="7">2.3.1.16</ecNumber>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ordered locus">Daci_3314</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="8" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1 4">Belongs to the thiolase-like superfamily. Thiolase family.</text>
    </comment>
    <dbReference type="EC" id="2.3.1.16" evidence="7"/>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX35952.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012205152.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_3314"/>
    <dbReference type="PRIDE" id="A9BZP4"/>
    <dbReference type="EnsemblBacteria" id="ABX35952">
        <property type="protein sequence ID" value="ABX35952"/>
        <property type="gene ID" value="Daci_3314"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_3314"/>
    <dbReference type="eggNOG" id="COG0183">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_031026_1_1_4"/>
    <dbReference type="OMA" id="SMRPDDL"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003988">
        <property type="term" value="F:acetyl-CoA C-acyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="CDD" id="cd00751">
        <property type="entry name" value="thiolase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.47.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002155">
        <property type="entry name" value="Thiolase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016039">
        <property type="entry name" value="Thiolase-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020615">
        <property type="entry name" value="Thiolase_acyl_enz_int_AS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020617">
        <property type="entry name" value="Thiolase_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020613">
        <property type="entry name" value="Thiolase_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020616">
        <property type="entry name" value="Thiolase_N"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02803">
        <property type="entry name" value="Thiolase_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00108">
        <property type="entry name" value="Thiolase_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF000429">
        <property type="entry name" value="Ac-CoA_Ac_transf"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53901">
        <property type="entry name" value="SSF53901"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01930">
        <property type="entry name" value="AcCoA-C-Actrans"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00098">
        <property type="entry name" value="THIOLASE_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00737">
        <property type="entry name" value="THIOLASE_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4 7" id="KW-0012">Acyltransferase</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 4 7" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Thiolase_N" evidence="5">
        <location>
            <begin position="5"/>
            <end position="261"/>
        </location>
    </feature>
    <feature type="domain" description="Thiolase_C" evidence="6">
        <location>
            <begin position="268"/>
            <end position="389"/>
        </location>
    </feature>
    <feature type="active site" description="Acyl-thioester intermediate" evidence="3">
        <location>
            <position position="90"/>
        </location>
    </feature>
    <feature type="active site" description="Proton acceptor" evidence="3">
        <location>
            <position position="347"/>
        </location>
    </feature>
    <feature type="active site" description="Proton acceptor" evidence="3">
        <location>
            <position position="377"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00010982"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="PIRSR" id="PIRSR000429-1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="RuleBase" id="RU003557"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="Pfam" id="PF00108"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="Pfam" id="PF02803"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="ABX35952.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="391" mass="40643" checksum="04A63C3E6E2730D1" modified="2008-01-15" version="1">MTSAVIVSTARTPLAKSWKGSFNMTHGATLGGHAVQHAVQRAGIDPAAVDDVIMGCANPEGATGMNIARQIALKAGLPITASGMTINRFCSSGLQTIATASQRIIAGEGDVYVAGGVESISCVQQEMNLHMIQDLALAKQKPEIYWSMLQTAEQVAKRYGIGRDAMDEYGAASQQKACAAQAAGLLDAEIAPITVTMGVADKVRGLITKEVTCSKDEGVREGTTKEGISGIRPALPGGVISAGNASQFSDGAGACVVVSEDYASRNNLKPLGRFLGFAVAGCEPDEMGIGPVFAVPKVLKKLGLTVQDIDLWELNEAFAVQVLYCRDKLGIPNDRLNVNGGAIALGHPYGVSGQRLTGHALIEGKRRGAKRVCVTMCIGGGMGAAGVFEVL</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="47" xmlns="http://uniprot.org/uniprot">
    <accession>A9C029</accession>
    <name>A9C029_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_3659</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX36291.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_3659"/>
    <dbReference type="PRIDE" id="A9C029"/>
    <dbReference type="EnsemblBacteria" id="ABX36291">
        <property type="protein sequence ID" value="ABX36291"/>
        <property type="gene ID" value="Daci_3659"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_3659"/>
    <dbReference type="eggNOG" id="COG1430">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_097039_0_0_4"/>
    <dbReference type="OMA" id="TMWMKNT"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.120.1140">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003795">
        <property type="entry name" value="DUF192"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038695">
        <property type="entry name" value="Saro_0823-like_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37953">
        <property type="entry name" value="PTHR37953"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02643">
        <property type="entry name" value="DUF192"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="1">
        <location>
            <begin position="1"/>
            <end position="38"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5002733216" evidence="1">
        <location>
            <begin position="39"/>
            <end position="180"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX36291.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="180" mass="19526" checksum="CD9158F8AC42271B" modified="2008-01-15" version="1">MCKMTKPSTPLHTSLSRRALQRLLMAACLAGAAVSAGAQPQGSPQMNLRRVELTAGFHRIDAQVAASDRERAIGLMFRQDMPAQEGMIFVFEVPAVQCFWMRNTLLPLTAAFVADDGTIVNLADMKPMTEDSHCSAKPVRYVLEMNQGWFAKRGIQAGTKLSGNLFTPAPKPAPATAPKP</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="78" xmlns="http://uniprot.org/uniprot">
    <accession>A9C031</accession>
    <name>A9C031_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">Isocitrate dehydrogenase [NADP]</fullName>
            <ecNumber evidence="3">1.1.1.42</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="5" type="ordered locus">Daci_3661</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="6" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="2">
            <text>D-threo-isocitrate + NADP(+) = 2-oxoglutarate + CO2 + NADPH</text>
            <dbReference type="Rhea" id="RHEA:19629"/>
            <dbReference type="ChEBI" id="CHEBI:15562"/>
            <dbReference type="ChEBI" id="CHEBI:16526"/>
            <dbReference type="ChEBI" id="CHEBI:16810"/>
            <dbReference type="ChEBI" id="CHEBI:57783"/>
            <dbReference type="ChEBI" id="CHEBI:58349"/>
            <dbReference type="EC" id="1.1.1.42"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="3">
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </cofactor>
        <cofactor evidence="3">
            <name>Mn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29035"/>
        </cofactor>
    </comment>
    <dbReference type="EC" id="1.1.1.42" evidence="3"/>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX36293.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012205489.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_3661"/>
    <dbReference type="PRIDE" id="A9C031"/>
    <dbReference type="EnsemblBacteria" id="ABX36293">
        <property type="protein sequence ID" value="ABX36293"/>
        <property type="gene ID" value="Daci_3661"/>
    </dbReference>
    <dbReference type="GeneID" id="60687901"/>
    <dbReference type="KEGG" id="dac:Daci_3661"/>
    <dbReference type="eggNOG" id="COG0538">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_031953_7_1_4"/>
    <dbReference type="OMA" id="CVRPCRY"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004450">
        <property type="term" value="F:isocitrate dehydrogenase (NADP+) activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000287">
        <property type="term" value="F:magnesium ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051287">
        <property type="term" value="F:NAD binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006097">
        <property type="term" value="P:glyoxylate cycle"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006099">
        <property type="term" value="P:tricarboxylic acid cycle"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019818">
        <property type="entry name" value="IsoCit/isopropylmalate_DH_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004439">
        <property type="entry name" value="Isocitrate_DH_NADP_dimer_prok"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR024084">
        <property type="entry name" value="IsoPropMal-DH-like_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43504">
        <property type="entry name" value="PTHR43504"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00180">
        <property type="entry name" value="Iso_dh"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM01329">
        <property type="entry name" value="Iso_dh"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00183">
        <property type="entry name" value="prok_nadp_idh"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00470">
        <property type="entry name" value="IDH_IMDH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1 3" id="KW-0329">Glyoxylate bypass</keyword>
    <keyword evidence="3" id="KW-0464">Manganese</keyword>
    <keyword evidence="3" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="3" id="KW-0521">NADP</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0816">Tricarboxylic acid cycle</keyword>
    <feature type="domain" description="Iso_dh" evidence="4">
        <location>
            <begin position="31"/>
            <end position="415"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022435"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023554"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="RuleBase" id="RU004446"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="SMART" id="SM01329"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="ABX36293.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="420" mass="46116" checksum="746F255C1613278D" modified="2008-01-15" version="1">MNRFQHIQVPAEGQKITVNADMSLNVPDQPIIPFIEGDGTGVDITPVMIKVVDAAVARAYGGKRKIQWMEVFAGEKSTRIYGPDVWLPEETMQALREYVVSIKGPLTTPVGGGIRSLNVALRQELDLYVCLRPVQYFKGVPSPLKEPEKTNMVIFRENSEDIYAGIEYEARSDNAKKLIDFLVKEMGVKKIRFPETSGIGVKPVSIEGTERLVRKAIQYAIDNDKPSVTLVHKGNIMKFTEGGFRDWGYALAAREFGAQPIDGGPWLKFKNPRTGRDIVIKDSIADAFLQQILLRPAEYSVVATLNLNGDYISDALAAQVGGIGIAPGANMSDSVACFEATHGTAPKYAGKDYVNPGSEILSAEMMLRHMGWREAADLVISALEKAIQSKQVTYDFARLMDGATQVSCSGFGEVMISKMD</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="59" xmlns="http://uniprot.org/uniprot">
    <accession>A9C035</accession>
    <name>A9C035_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Beta-lactamase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Daci_3665</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="4" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX36297.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012205493.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_3665"/>
    <dbReference type="PRIDE" id="A9C035"/>
    <dbReference type="EnsemblBacteria" id="ABX36297">
        <property type="protein sequence ID" value="ABX36297"/>
        <property type="gene ID" value="Daci_3665"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_3665"/>
    <dbReference type="eggNOG" id="COG1680">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_030169_1_3_4"/>
    <dbReference type="OMA" id="GHWWLNQ"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.710.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001466">
        <property type="entry name" value="Beta-lactam-related"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012338">
        <property type="entry name" value="Beta-lactam/transpept-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006311">
        <property type="entry name" value="TAT_signal"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00144">
        <property type="entry name" value="Beta-lactamase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56601">
        <property type="entry name" value="SSF56601"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51318">
        <property type="entry name" value="TAT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="1">
        <location>
            <begin position="1"/>
            <end position="29"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5002736050" evidence="1">
        <location>
            <begin position="30"/>
            <end position="374"/>
        </location>
    </feature>
    <feature type="domain" description="Beta-lactamase" evidence="2">
        <location>
            <begin position="65"/>
            <end position="362"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF00144"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ABX36297.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="374" mass="40560" checksum="D297D2F22C1F8467" modified="2008-01-15" version="1">MTHNAFRTDRRRWLQTGAALAALGCTACASMGQGGASSTGTGLAEDLGERLDQGVQSGELANLHAVVVMRHGRLALERYFEGEDERWGEPLGKVAFNADSLHDVRSVSKSIVGLLYGMALAEGKVPALDTPLVQAFPAYSDLAADEGRRGILVSHALGMTMGLQWDEDLPYSDPRNSEIAMERSSDRYRYVLEQPIVAPPGERWCYSGGATALLGHLIAQGSGMPLLDYARHKLFAPLGIDKAEWTPGTNGEAAAASGLRLRARDLARIGQLVLQQGEWPGGRQGRALVLRHWIVQSIQPRVDAWPGLRYGHHWYVGQTRAGLAYYMAIGLGGQRLVVVPQHSLVYAVFMGNYDSPQQVQRVAAVQGLIAAALR</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-05-25" version="51" xmlns="http://uniprot.org/uniprot">
    <accession>A9C044</accession>
    <name>A9C044_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Cupin 2 conserved barrel domain protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_3674</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX36306.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012205502.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_3674"/>
    <dbReference type="EnsemblBacteria" id="ABX36306">
        <property type="protein sequence ID" value="ABX36306"/>
        <property type="gene ID" value="Daci_3674"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_3674"/>
    <dbReference type="eggNOG" id="COG0662">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_139560_0_0_4"/>
    <dbReference type="OMA" id="PGIEQVC"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.120.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013096">
        <property type="entry name" value="Cupin_2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014710">
        <property type="entry name" value="RmlC-like_jellyroll"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011051">
        <property type="entry name" value="RmlC_Cupin_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07883">
        <property type="entry name" value="Cupin_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51182">
        <property type="entry name" value="SSF51182"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Cupin_2" evidence="1">
        <location>
            <begin position="43"/>
            <end position="115"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF07883"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX36306.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="131" mass="14457" checksum="371BD6C40EF06AAB" modified="2008-01-15" version="1">MPRYLIREQDVPGYSPANHHGTVNRRLVSAANVGARHMELVLGTLEQGGGALPHAHPGMEQACYLLAGTAEVEIDTPDGKERFAMQPGDTCFFPEDCMHIFRVTSAEPVRLLVFYSPPYGENPERVRRPAA</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="73" xmlns="http://uniprot.org/uniprot">
    <accession>A9C045</accession>
    <name>A9C045_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="8">Acyl-CoA dehydrogenase domain protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="8" type="ordered locus">Daci_3675</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="9" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>FAD</name>
            <dbReference type="ChEBI" id="CHEBI:57692"/>
        </cofactor>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the acyl-CoA dehydrogenase family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX36307.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012205503.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_3675"/>
    <dbReference type="PRIDE" id="A9C045"/>
    <dbReference type="EnsemblBacteria" id="ABX36307">
        <property type="protein sequence ID" value="ABX36307"/>
        <property type="gene ID" value="Daci_3675"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_3675"/>
    <dbReference type="eggNOG" id="COG1960">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_018204_0_2_4"/>
    <dbReference type="OMA" id="GFPHDFH"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0050660">
        <property type="term" value="F:flavin adenine dinucleotide binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016627">
        <property type="term" value="F:oxidoreductase activity, acting on the CH-CH group of donors"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.540.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.110.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006091">
        <property type="entry name" value="Acyl-CoA_Oxase/DH_mid-dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR046373">
        <property type="entry name" value="Acyl-CoA_Oxase/DH_mid-dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036250">
        <property type="entry name" value="AcylCo_DH-like_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009075">
        <property type="entry name" value="AcylCo_DH/oxidase_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013786">
        <property type="entry name" value="AcylCoA_DH/ox_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037069">
        <property type="entry name" value="AcylCoA_DH/ox_N_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009100">
        <property type="entry name" value="AcylCoA_DH/oxidase_NM_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00441">
        <property type="entry name" value="Acyl-CoA_dh_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02770">
        <property type="entry name" value="Acyl-CoA_dh_M"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02771">
        <property type="entry name" value="Acyl-CoA_dh_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47203">
        <property type="entry name" value="SSF47203"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56645">
        <property type="entry name" value="SSF56645"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-0274">FAD</keyword>
    <keyword evidence="3" id="KW-0285">Flavoprotein</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Acyl-CoA_dh_N" evidence="7">
        <location>
            <begin position="6"/>
            <end position="118"/>
        </location>
    </feature>
    <feature type="domain" description="Acyl-CoA_dh_M" evidence="6">
        <location>
            <begin position="123"/>
            <end position="218"/>
        </location>
    </feature>
    <feature type="domain" description="Acyl-CoA_dh_1" evidence="5">
        <location>
            <begin position="232"/>
            <end position="361"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001974"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00009347"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022630"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022827"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="Pfam" id="PF00441"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="Pfam" id="PF02770"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="Pfam" id="PF02771"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="ABX36307.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="387" mass="42565" checksum="710CEBC5CE15A2D0" modified="2008-01-15" version="1">MDFLWNEEQEQIRDAVERACAPFDADYWLRKDHEGGFPHDFHKALADAGWLGIAMPEEFGGAGLGISEAALMMHTISATGAGLSGASAVHMNIFGLHPVVVFGTDEQKRRWLPPLIAGTDKACFGVTEPNAGLNTLKLQTRAVRDGDVYVVHGQKVFISTAQVANKILLLVRTKPVEECKGTEGLSLFYTDLDRERIEVREIDKLGRKCVDTNQLFIDGLRIPAEDRIGEEGKGFSYILHGLNPERILIAAEAVGLGRAALARATQYAKERVVFDRPIGQNQGIQHPLAQAWMGLEAAHLMVQKAAFLYDRGLPCGAEANAAKYLAAEACAKACETAIFTHGGMGYAKEYHVERYMRESWIPRLAPVSPQLIMCFIAEKVLGLPKSY</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="78" xmlns="http://uniprot.org/uniprot">
    <accession>A9C091</accession>
    <name>A9C091_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="7">Transcriptional regulator, TetR family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ordered locus">Daci_4026</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="8" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX36657.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_4026"/>
    <dbReference type="PRIDE" id="A9C091"/>
    <dbReference type="EnsemblBacteria" id="ABX36657">
        <property type="protein sequence ID" value="ABX36657"/>
        <property type="gene ID" value="Daci_4026"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_4026"/>
    <dbReference type="eggNOG" id="COG1309">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_069356_40_0_4"/>
    <dbReference type="OMA" id="VAFACAQ"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009057">
        <property type="entry name" value="Homeobox-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001647">
        <property type="entry name" value="HTH_TetR"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036271">
        <property type="entry name" value="Tet_transcr_reg_TetR-rel_C_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025996">
        <property type="entry name" value="TetR_C_WHG"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13305">
        <property type="entry name" value="TetR_C_33"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00440">
        <property type="entry name" value="TetR_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46689">
        <property type="entry name" value="SSF46689"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48498">
        <property type="entry name" value="SSF48498"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50977">
        <property type="entry name" value="HTH_TETR_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2 4" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0804">Transcription</keyword>
    <keyword evidence="1" id="KW-0805">Transcription regulation</keyword>
    <feature type="domain" description="HTH tetR-type" evidence="6">
        <location>
            <begin position="36"/>
            <end position="96"/>
        </location>
    </feature>
    <feature type="DNA-binding region" description="H-T-H motif" evidence="4">
        <location>
            <begin position="59"/>
            <end position="78"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="5">
        <location>
            <begin position="1"/>
            <end position="32"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023015"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023163"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00335"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="PROSITE" id="PS50977"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="ABX36657.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="234" mass="25136" checksum="1709F597D8E4153C" modified="2008-01-15" version="1">MAGRSRLLSEGGCPVGKEGKKTVTQRRVSRESYHHGDLRQALVEAGLALAREGGPQAIVLREATRRAGVAPNAAYRHFANRQALFDAVRAAALGALAAAIEAEMAQARALPDALLRSRALLAAVGRGYLGFAQTETGWFRTAFASVEYDVDLPPDTTRAAAMGLNPFELLGYALDSMAEAGVLPPERRPQAEFLAWSAVHGMALLVIDGPLRRATPEQRRALALRLLEMVEKGI</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="82" xmlns="http://uniprot.org/uniprot">
    <accession>A9C0C4</accession>
    <name>A9C0C4_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="4">Cytochrome bo(3) ubiquinol oxidase subunit 3</fullName>
        </recommendedName>
        <alternativeName>
            <fullName evidence="14">Cytochrome o ubiquinol oxidase subunit 3</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="12">Oxidase bo(3) subunit 3</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="15">Ubiquinol oxidase polypeptide III</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="13">Ubiquinol oxidase subunit 3</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="19" type="ordered locus">Daci_4059</name>
    </gene>
    <organism evidence="19 20">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="19 20" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="20">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="20" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="20">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="11">Cytochrome bo(3) ubiquinol terminal oxidase is the component of the aerobic respiratory chain of E.coli that predominates when cells are grown at high aeration. Has proton pump activity across the membrane in addition to electron transfer, pumping 2 protons/electron.</text>
    </comment>
    <comment type="subunit">
        <text evidence="3">Heterooctamer of two A chains, two B chains, two C chains and two D chains.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="16">Cell membrane</location>
            <topology evidence="16">Multi-pass membrane protein</topology>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2 16">Belongs to the cytochrome c oxidase subunit 3 family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX36690.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012205884.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_4059"/>
    <dbReference type="PRIDE" id="A9C0C4"/>
    <dbReference type="EnsemblBacteria" id="ABX36690">
        <property type="protein sequence ID" value="ABX36690"/>
        <property type="gene ID" value="Daci_4059"/>
    </dbReference>
    <dbReference type="GeneID" id="60688386"/>
    <dbReference type="KEGG" id="dac:Daci_4059"/>
    <dbReference type="eggNOG" id="COG1845">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_044071_3_0_4"/>
    <dbReference type="OMA" id="SIYWWGS"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009486">
        <property type="term" value="F:cytochrome bo3 ubiquinol oxidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004129">
        <property type="term" value="F:cytochrome-c oxidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0019646">
        <property type="term" value="P:aerobic electron transport chain"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd02863">
        <property type="entry name" value="Ubiquinol_oxidase_III"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.120.80">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR024791">
        <property type="entry name" value="Cyt_c/ubiquinol_Oxase_su3"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000298">
        <property type="entry name" value="Cyt_c_oxidase-like_su3"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035973">
        <property type="entry name" value="Cyt_c_oxidase_su3-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013833">
        <property type="entry name" value="Cyt_c_oxidase_su3_a-hlx"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014206">
        <property type="entry name" value="Cyt_c_ubiqinol_oxidase_su3"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR033946">
        <property type="entry name" value="Ubiquinol_oxase_su3_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11403">
        <property type="entry name" value="PTHR11403"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00510">
        <property type="entry name" value="COX3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF81452">
        <property type="entry name" value="SSF81452"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR02842">
        <property type="entry name" value="CyoC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50253">
        <property type="entry name" value="COX3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="6" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="8" id="KW-0249">Electron transport</keyword>
    <keyword evidence="10 17" id="KW-0472">Membrane</keyword>
    <keyword evidence="20" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="7 16 17" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="9 17" id="KW-1133">Transmembrane helix</keyword>
    <keyword evidence="5" id="KW-0813">Transport</keyword>
    <feature type="transmembrane region" description="Helical" evidence="17">
        <location>
            <begin position="35"/>
            <end position="55"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="17">
        <location>
            <begin position="75"/>
            <end position="94"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="17">
        <location>
            <begin position="106"/>
            <end position="124"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="17">
        <location>
            <begin position="144"/>
            <end position="168"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="17">
        <location>
            <begin position="189"/>
            <end position="208"/>
        </location>
    </feature>
    <feature type="domain" description="COX3" evidence="18">
        <location>
            <begin position="28"/>
            <end position="209"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00010581"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00011700"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00014687"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022448"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00022982"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="ARBA" id="ARBA00025694"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="12">
        <source>
            <dbReference type="ARBA" id="ARBA00030072"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="13">
        <source>
            <dbReference type="ARBA" id="ARBA00031884"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="14">
        <source>
            <dbReference type="ARBA" id="ARBA00032189"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="15">
        <source>
            <dbReference type="ARBA" id="ARBA00032717"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="16">
        <source>
            <dbReference type="RuleBase" id="RU003376"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="17">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="18">
        <source>
            <dbReference type="PROSITE" id="PS50253"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="19">
        <source>
            <dbReference type="EMBL" id="ABX36690.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="20">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="210" mass="23232" checksum="4A2C0CA1F9A3DB86" modified="2008-01-15" version="1">MSDTRYTAGGAAALAPREYHLAEEPHPENGTALGFWLYLMSDCLIFAALFATYGVLGRNYAAGPTGAQLFDLPLVAMNTAFLLLSSITFGFAMLQKQQGKLGGTQLWLAITGLFGLCFLGLELYEFSHLLHEGAGPQRSAFLSSFFTLVGTHGLHVSFGLIWLVTLMIQINKHGLTHENNRRLMCLSMFWHFLDVVWIGVFTFVYLMGVL</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-05-25" version="49" xmlns="http://uniprot.org/uniprot">
    <accession>A9C0D7</accession>
    <name>A9C0D7_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_4072</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX36703.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012205897.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="ABX36703">
        <property type="protein sequence ID" value="ABX36703"/>
        <property type="gene ID" value="Daci_4072"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_4072"/>
    <dbReference type="eggNOG" id="COG3042">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_155318_1_1_4"/>
    <dbReference type="OMA" id="TQCKLPS"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005590">
        <property type="entry name" value="DUF333"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03891">
        <property type="entry name" value="DUF333"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="1">
        <location>
            <begin position="1"/>
            <end position="24"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5002736206" evidence="1">
        <location>
            <begin position="25"/>
            <end position="83"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX36703.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="83" mass="8800" checksum="5820956419E5951C" modified="2008-01-15" version="1">MNKAQELSGIALVALVALALSACAQQKLAPSVGMANPASVYCGEIGGQVRMEKTPQGQEGICVLPNGTEMEEWTLYRKDHPAK</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="62" xmlns="http://uniprot.org/uniprot">
    <accession>A9C1K7</accession>
    <name>A9C1K7_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Glycerophosphoryl diester phosphodiesterase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_6042</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX38670.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_6042"/>
    <dbReference type="PRIDE" id="A9C1K7"/>
    <dbReference type="EnsemblBacteria" id="ABX38670">
        <property type="protein sequence ID" value="ABX38670"/>
        <property type="gene ID" value="Daci_6042"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_6042"/>
    <dbReference type="eggNOG" id="COG0584">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_030226_0_0_4"/>
    <dbReference type="OMA" id="TFRPENY"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008081">
        <property type="term" value="F:phosphoric diester hydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006629">
        <property type="term" value="P:lipid metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.20.20.190">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR030395">
        <property type="entry name" value="GP_PDE_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017946">
        <property type="entry name" value="PLC-like_Pdiesterase_TIM-brl"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03009">
        <property type="entry name" value="GDPD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51695">
        <property type="entry name" value="SSF51695"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51704">
        <property type="entry name" value="GP_PDE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="GP-PDE" evidence="1">
        <location>
            <begin position="62"/>
            <end position="398"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS51704"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX38670.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="406" mass="43929" checksum="C1782A601363AEE8" modified="2008-01-15" version="1">MPVSWVARTIDGLRTRKADMNRFPRRRALALAGAAAGLLLAGCATPQAANSPSQAADWPPRPALIAHRGASALRPEHTLEAYREAIRAGADFIEPDLVITRDGVLVARHENAIAILAADGSLKEATTNVADRPEFAARKTTKTIEGQAITGWFVEDFTLAELKTLRARERIPAIRPANVQFNDRFEVPTLQEVIDLAKAESARTNRTIGIYPETKHPSYFQSIGLPLEPVLLKLLADNGWNHAQAPVFVQSFEVENLRWMRARSSLRLVQLLAPKGKPYDSVARGTGPGYADMVTPAGLAEIARYANGIGPSKSMVIPVVQGANAAPTALVADAHRAGLLVHPWTLRPENAFLPLSLKSPPAQDGARRGNARADMDDFLRTGIDGIFTDDPSVGRAAIDDLLKPKP</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2021-09-29" version="74" xmlns="http://uniprot.org/uniprot">
    <accession>A9C1X0</accession>
    <name>A9C1X0_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="7">Binding-protein-dependent transport systems inner membrane component</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ordered locus">Daci_2667</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="8" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="4">Cell membrane</location>
            <topology evidence="4">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="4">Belongs to the binding-protein-dependent transport system permease family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX35305.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012204551.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_2667"/>
    <dbReference type="EnsemblBacteria" id="ABX35305">
        <property type="protein sequence ID" value="ABX35305"/>
        <property type="gene ID" value="Daci_2667"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_2667"/>
    <dbReference type="eggNOG" id="COG4176">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_028473_0_0_4"/>
    <dbReference type="OMA" id="HFNIMDP"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
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        <property type="entry name" value="MetI-like_sf"/>
    </dbReference>
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        <property type="entry name" value="BPD_transp_1"/>
        <property type="match status" value="1"/>
    </dbReference>
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        <property type="match status" value="1"/>
    </dbReference>
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        <property type="entry name" value="ABC_TM1"/>
        <property type="match status" value="1"/>
    </dbReference>
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    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
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            <begin position="136"/>
            <end position="154"/>
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            <begin position="161"/>
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    </feature>
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    </feature>
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            <begin position="181"/>
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        <location>
            <begin position="1"/>
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    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
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    </evidence>
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        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
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        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="RuleBase" id="RU363032"/>
        </source>
    </evidence>
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        <source>
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    </evidence>
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        <source>
            <dbReference type="PROSITE" id="PS50928"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="ABX35305.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="399" mass="41246" checksum="9ED3894420096721" modified="2008-01-15" version="1">MSDATNSLNPNTAAAATDPWADASAAPASTDSAASAASASADPWATAATPAPDASADPWGAASGGDAAGGDWLGASAGSGVPDDAHASLWHQLTTDGLPVQGWINSGLEWVVHHFRPFFQAVRTPIDGTLSGITDAMLALPWPLLILVLTLVAWQFAGRAMAIGAAVSLVVVAMLGIWPEAMVTLSLVLTSLVFCMVIGLPAGILLASSDRAQRWTRPLLDAMQTTPAFVYLVPVVMLFGIGNVPGVIVTIIFALPPLIRLTNLGIRQVRPDLIEASRAYGASPWQLLWKVQLPLAMPSIMAGVNQALMLSLSMVVIASMIAVGGLGQMVLRGIGRLDMGLATVGGLGIVLLAIVLDRITQAMGQTTRGGARWWHSGPAGCIARLLGAGNKPVHRGSTS</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="47" xmlns="http://uniprot.org/uniprot">
    <accession>A9C2M0</accession>
    <name>A9C2M0_DELAS</name>
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        <submittedName>
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    <organism evidence="1 2">
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            <taxon>Betaproteobacteria</taxon>
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    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
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                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="2" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX36369.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012205563.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_3737"/>
    <dbReference type="PRIDE" id="A9C2M0"/>
    <dbReference type="EnsemblBacteria" id="ABX36369">
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        <property type="gene ID" value="Daci_3737"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_3737"/>
    <dbReference type="eggNOG" id="COG1077">
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    </dbReference>
    <dbReference type="HOGENOM" id="CLU_136235_0_0_4"/>
    <dbReference type="OMA" id="PMEKTEG"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ABX36369.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="161" mass="17734" checksum="7E1B99EB87DC7200" modified="2008-01-15" version="1">MLSAFISLIYVQISPERLTLKDPKTGQTLSEVPELALSPPPRRRILAAGPQARLAAASEPAEVVNPFAHPRSLISDFILAEQLLKYQLRRMHRRAWLAASPHIVIHPLGDPEGGFTQVELRALRELANAAGASKVNVWTGRPLTDEELLTRKPPAQGGVWE</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-05-25" version="71" xmlns="http://uniprot.org/uniprot">
    <accession>A9C2M5</accession>
    <name>A9C2M5_DELAS</name>
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        <submittedName>
            <fullName evidence="8">Drug resistance transporter, EmrB/QacA subfamily</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="8" type="ordered locus">Daci_3742</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
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        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
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        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
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                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
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            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="9" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX36374.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012205568.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_3742"/>
    <dbReference type="EnsemblBacteria" id="ABX36374">
        <property type="protein sequence ID" value="ABX36374"/>
        <property type="gene ID" value="Daci_3742"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_3742"/>
    <dbReference type="eggNOG" id="COG2814">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_000960_28_0_4"/>
    <dbReference type="OMA" id="GNICYGA"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0022857">
        <property type="term" value="F:transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.1250.20">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004638">
        <property type="entry name" value="EmrB-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011701">
        <property type="entry name" value="MFS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020846">
        <property type="entry name" value="MFS_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036259">
        <property type="entry name" value="MFS_trans_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07690">
        <property type="entry name" value="MFS_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF103473">
        <property type="entry name" value="SSF103473"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00711">
        <property type="entry name" value="efflux_EmrB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50850">
        <property type="entry name" value="MFS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4 6" id="KW-0472">Membrane</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 6" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="3 6" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="43"/>
            <end position="64"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="84"/>
            <end position="103"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="110"/>
            <end position="131"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="137"/>
            <end position="159"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="171"/>
            <end position="192"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="198"/>
            <end position="220"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="232"/>
            <end position="251"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="257"/>
            <end position="281"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="301"/>
            <end position="326"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="332"/>
            <end position="355"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="367"/>
            <end position="385"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="391"/>
            <end position="412"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="510"/>
            <end position="527"/>
        </location>
    </feature>
    <feature type="domain" description="MFS" evidence="7">
        <location>
            <begin position="46"/>
            <end position="533"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="5">
        <location>
            <begin position="1"/>
            <end position="33"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Pro residues" evidence="5">
        <location>
            <begin position="14"/>
            <end position="33"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="PROSITE" id="PS50850"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="ABX36374.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="544" mass="57807" checksum="9FE3C0E933482C2C" modified="2008-01-15" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="72" xmlns="http://uniprot.org/uniprot">
    <accession>A9C2X6</accession>
    <name>A9C2X6_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">Single-stranded DNA-binding protein</fullName>
        </recommendedName>
    </protein>
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        <name evidence="5" type="ordered locus">Daci_4149</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
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        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
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            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="6" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX36780.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012205959.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_4149"/>
    <dbReference type="PRIDE" id="A9C2X6"/>
    <dbReference type="EnsemblBacteria" id="ABX36780">
        <property type="protein sequence ID" value="ABX36780"/>
        <property type="gene ID" value="Daci_4149"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_4149"/>
    <dbReference type="eggNOG" id="COG0629">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_142244_1_0_4"/>
    <dbReference type="OMA" id="ANDEYQQ"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003697">
        <property type="term" value="F:single-stranded DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006260">
        <property type="term" value="P:DNA replication"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd04496">
        <property type="entry name" value="SSB_OBF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.50.140">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012340">
        <property type="entry name" value="NA-bd_OB-fold"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000424">
        <property type="entry name" value="Primosome_PriB/ssb"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011344">
        <property type="entry name" value="ssDNA-bd"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00436">
        <property type="entry name" value="SSB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF002070">
        <property type="entry name" value="SSB"/>
        <property type="match status" value="1"/>
    </dbReference>
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        <property type="entry name" value="SSF50249"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50935">
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        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1 2 3" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="4">
        <location>
            <begin position="1"/>
            <end position="23"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="4">
        <location>
            <begin position="118"/>
            <end position="146"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="PIRNR" id="PIRNR002070"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00252"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="ABX36780.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="146" mass="16966" checksum="076122D111499C2B" modified="2008-01-15" version="1">MSTHFWGEGNIGSPPEYREFPNGNDEPRRLLRLNVYFDNPVPTKGGDFEDRGGFWAPVEIWHRDVAHWKDLYQKGMRVLVVGRMEREPWTDNEDQPRETWQINARSVGILPFRIESVTLSPKPQDAEAKSQAAQEPAAPKEPRRRK</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="47" xmlns="http://uniprot.org/uniprot">
    <accession>A9C3B2</accession>
    <name>A9C3B2_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Daci_4594</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="4" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX37223.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012206393.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="PRIDE" id="A9C3B2"/>
    <dbReference type="EnsemblBacteria" id="ABX37223">
        <property type="protein sequence ID" value="ABX37223"/>
        <property type="gene ID" value="Daci_4594"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_4594"/>
    <dbReference type="eggNOG" id="ENOG50344F0">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_1632691_0_0_4"/>
    <dbReference type="OMA" id="VYQFMQY"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="2" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="28"/>
            <end position="48"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="22"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="59"/>
            <end position="125"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="140"/>
            <end position="162"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="91"/>
            <end position="105"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ABX37223.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="162" mass="17339" checksum="A7DD103D45C0AC59" modified="2008-01-15" version="1">MPATSHRPHARPRGPVHVHVRPPSDENLVITVIAVSLLAITVLGIGVYQFMQYQREQDQEQLNSRVYRSYVRNTDEAPAPEEPEQPAATPTPAKPSQQQLNQEMTRKLLAHPGVTPGAGFSAPGVKSTGVVIIDAIDQAQAREKASSAARPAAAIANPSPAS</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="61" xmlns="http://uniprot.org/uniprot">
    <accession>A9BLF8</accession>
    <name>A9BLF8_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Alpha/beta hydrolase fold</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_3812</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX36443.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012205637.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_3812"/>
    <dbReference type="PRIDE" id="A9BLF8"/>
    <dbReference type="EnsemblBacteria" id="ABX36443">
        <property type="protein sequence ID" value="ABX36443"/>
        <property type="gene ID" value="Daci_3812"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_3812"/>
    <dbReference type="eggNOG" id="COG2021">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_020336_29_1_4"/>
    <dbReference type="OMA" id="RYVPLQW"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016787">
        <property type="term" value="F:hydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.1820">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029058">
        <property type="entry name" value="AB_hydrolase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000073">
        <property type="entry name" value="AB_hydrolase_1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12697">
        <property type="entry name" value="Abhydrolase_6"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00111">
        <property type="entry name" value="ABHYDROLASE"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53474">
        <property type="entry name" value="SSF53474"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="AB hydrolase-1" evidence="1">
        <location>
            <begin position="6"/>
            <end position="231"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF12697"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX36443.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="239" mass="26053" checksum="CA8DB1B5070B95BF" modified="2008-01-15" version="1">MSRPCVVLLPGLLCDETVWHEQQAALSFAGVAECIVPSYGAAATIEDMARLVLDCVAAERFSLAGHSMGGRVALAIADMAPQRVERLALLDTGMDPIAPGDAGESERAKRMALLQIARHSGMREMGLQWARGMVHPDRLDTPLFGEVLDMVARFTPEVFAAQINALLNRPDAGDVLRQLRCPTLLACGRQDAWSPLSRHERMQALCPGAELVVIEDSGHMSTMEQPQQVSRALLDWMGR</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="70" xmlns="http://uniprot.org/uniprot">
    <accession>A9BLG5</accession>
    <name>A9BLG5_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="4">AAA ATPase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ordered locus">Daci_3819</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="5" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX36450.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_3819"/>
    <dbReference type="PRIDE" id="A9BLG5"/>
    <dbReference type="EnsemblBacteria" id="ABX36450">
        <property type="protein sequence ID" value="ABX36450"/>
        <property type="gene ID" value="Daci_3819"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_3819"/>
    <dbReference type="eggNOG" id="COG0714">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_003361_0_0_4"/>
    <dbReference type="OMA" id="MGNNVML"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016887">
        <property type="term" value="F:ATP hydrolysis activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003593">
        <property type="entry name" value="AAA+_ATPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003959">
        <property type="entry name" value="ATPase_AAA_core"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020958">
        <property type="entry name" value="DUF3686"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00004">
        <property type="entry name" value="AAA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12458">
        <property type="entry name" value="DUF3686"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00382">
        <property type="entry name" value="AAA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="AAA" evidence="3">
        <location>
            <begin position="1307"/>
            <end position="1456"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="1667"/>
            <end position="1691"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="1806"/>
            <end position="1841"/>
        </location>
    </feature>
    <feature type="coiled-coil region" evidence="1">
        <location>
            <begin position="740"/>
            <end position="767"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="SMART" id="SM00382"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="ABX36450.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="1841" mass="206377" checksum="8699390E803B01FC" modified="2008-01-15" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="79" xmlns="http://uniprot.org/uniprot">
    <accession>A9BLI4</accession>
    <name>A9BLI4_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Serine/threonine protein kinase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ordered locus">Daci_3838</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="6" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX36469.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012205663.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_3838"/>
    <dbReference type="PRIDE" id="A9BLI4"/>
    <dbReference type="EnsemblBacteria" id="ABX36469">
        <property type="protein sequence ID" value="ABX36469"/>
        <property type="gene ID" value="Daci_3838"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_3838"/>
    <dbReference type="eggNOG" id="COG0515">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_024915_0_0_4"/>
    <dbReference type="OMA" id="KPTNVMV"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004674">
        <property type="term" value="F:protein serine/threonine kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004713">
        <property type="term" value="F:protein tyrosine kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011009">
        <property type="entry name" value="Kinase-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000719">
        <property type="entry name" value="Prot_kinase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017441">
        <property type="entry name" value="Protein_kinase_ATP_BS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008266">
        <property type="entry name" value="Tyr_kinase_AS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020635">
        <property type="entry name" value="Tyr_kinase_cat_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00069">
        <property type="entry name" value="Pkinase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00219">
        <property type="entry name" value="TyrKc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56112">
        <property type="entry name" value="SSF56112"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00107">
        <property type="entry name" value="PROTEIN_KINASE_ATP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50011">
        <property type="entry name" value="PROTEIN_KINASE_DOM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00109">
        <property type="entry name" value="PROTEIN_KINASE_TYR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="5" id="KW-0418">Kinase</keyword>
    <keyword evidence="3" id="KW-0472">Membrane</keyword>
    <keyword evidence="1" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="5" id="KW-0723">Serine/threonine-protein kinase</keyword>
    <keyword evidence="5" id="KW-0808">Transferase</keyword>
    <keyword evidence="3" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="3" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="3">
        <location>
            <begin position="474"/>
            <end position="496"/>
        </location>
    </feature>
    <feature type="domain" description="Protein kinase" evidence="4">
        <location>
            <begin position="21"/>
            <end position="292"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="378"/>
            <end position="466"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="559"/>
            <end position="589"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="595"/>
            <end position="614"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="2">
        <location>
            <begin position="387"/>
            <end position="401"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Pro residues" evidence="2">
        <location>
            <begin position="429"/>
            <end position="443"/>
        </location>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <position position="50"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU10141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="PROSITE" id="PS50011"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="ABX36469.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="687" mass="72307" checksum="E0F8C706BF1ADEBC" modified="2008-01-15" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="32" xmlns="http://uniprot.org/uniprot">
    <accession>A9BLR5</accession>
    <name>A9BLR5_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_4223</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX36854.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="PRIDE" id="A9BLR5"/>
    <dbReference type="EnsemblBacteria" id="ABX36854">
        <property type="protein sequence ID" value="ABX36854"/>
        <property type="gene ID" value="Daci_4223"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_4223"/>
    <dbReference type="HOGENOM" id="CLU_2860308_0_0_4"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="34"/>
            <end position="64"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX36854.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="64" mass="6807" checksum="7F13277AEA9A663C" modified="2008-01-15" version="1">MDRDMTRAMTREPDHLITAAAGLDRGARHAAGMWPTFGALHPGPAAPTPPDPQMETAQGLCALR</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="49" xmlns="http://uniprot.org/uniprot">
    <accession>A9BLU5</accession>
    <name>A9BLU5_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">SpoVT-AbrB domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_4253</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX36884.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012206056.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_4253"/>
    <dbReference type="PRIDE" id="A9BLU5"/>
    <dbReference type="EnsemblBacteria" id="ABX36884">
        <property type="protein sequence ID" value="ABX36884"/>
        <property type="gene ID" value="Daci_4253"/>
    </dbReference>
    <dbReference type="GeneID" id="60688516"/>
    <dbReference type="KEGG" id="dac:Daci_4253"/>
    <dbReference type="eggNOG" id="COG2336">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_180537_0_0_4"/>
    <dbReference type="OMA" id="VQEATSW"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007159">
        <property type="entry name" value="SpoVT-AbrB_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037914">
        <property type="entry name" value="SpoVT-AbrB_sf"/>
    </dbReference>
    <dbReference type="SMART" id="SM00966">
        <property type="entry name" value="SpoVT_AbrB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF89447">
        <property type="entry name" value="SSF89447"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="SpoVT-AbrB" evidence="1">
        <location>
            <begin position="3"/>
            <end position="46"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="SMART" id="SM00966"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX36884.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="75" mass="8435" checksum="C09E8EEEE0B4ECAE" modified="2008-01-15" version="1">MLAKLTSKNQITLPKAVVSEVEAAEYFEVAVENGRIVLTPVHVQRVQRAQAVRDKLQQMGITEEDVQEATSWARK</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="81" xmlns="http://uniprot.org/uniprot">
    <accession>A9BLX3</accession>
    <name>A9BLX3_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="6">Transcriptional regulator, IclR family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ordered locus">Daci_4281</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="7" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX36912.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_4281"/>
    <dbReference type="PRIDE" id="A9BLX3"/>
    <dbReference type="EnsemblBacteria" id="ABX36912">
        <property type="protein sequence ID" value="ABX36912"/>
        <property type="gene ID" value="Daci_4281"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_4281"/>
    <dbReference type="eggNOG" id="COG1414">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_062618_4_1_4"/>
    <dbReference type="OMA" id="YSLGHRV"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006355">
        <property type="term" value="P:regulation of transcription, DNA-templated"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.450.40">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029016">
        <property type="entry name" value="GAF-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014757">
        <property type="entry name" value="Tscrpt_reg_IclR_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005471">
        <property type="entry name" value="Tscrpt_reg_IclR_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036390">
        <property type="entry name" value="WH_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF09339">
        <property type="entry name" value="HTH_IclR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01614">
        <property type="entry name" value="IclR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00346">
        <property type="entry name" value="HTH_ICLR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46785">
        <property type="entry name" value="SSF46785"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51077">
        <property type="entry name" value="HTH_ICLR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51078">
        <property type="entry name" value="ICLR_ED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0804">Transcription</keyword>
    <keyword evidence="1" id="KW-0805">Transcription regulation</keyword>
    <feature type="domain" description="HTH iclR-type" evidence="4">
        <location>
            <begin position="30"/>
            <end position="91"/>
        </location>
    </feature>
    <feature type="domain" description="IclR-ED" evidence="5">
        <location>
            <begin position="92"/>
            <end position="250"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="3">
        <location>
            <begin position="1"/>
            <end position="27"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Pro residues" evidence="3">
        <location>
            <begin position="1"/>
            <end position="19"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023015"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023163"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="PROSITE" id="PS51077"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="PROSITE" id="PS51078"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="ABX36912.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="266" mass="28453" checksum="D7619BCB6E6FC1E7" modified="2008-01-15" version="1">MPCTMNKPPSTPSPAQPPDDRSSPAKDGGVIAVTRALQLLGAFALGESHLSLAELSRRCALHKTTVLRLARTLAQSGFMVQRDDGDWRLGPAAGWLGARYQAGFDVQNVLEPALRALTQASGESAAFYVREGNVRTCLVRVEGPQALRHHARMGEGLPLDQGSPGRVILAFSGEPGPVYEQIRQRGYHWSIGEREQGVATVSAPVFGMHWRLMGSVCISGPASRLPESRLEAMAQTVVAAANQLSYALAGSASTQAPVVRASQWHP</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="58" xmlns="http://uniprot.org/uniprot">
    <accession>A9BM85</accession>
    <name>A9BM85_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Extracellular solute-binding protein family 1</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_4801</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX37430.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012206600.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_4801"/>
    <dbReference type="PRIDE" id="A9BM85"/>
    <dbReference type="EnsemblBacteria" id="ABX37430">
        <property type="protein sequence ID" value="ABX37430"/>
        <property type="gene ID" value="Daci_4801"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_4801"/>
    <dbReference type="eggNOG" id="COG1840">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_040513_0_0_4"/>
    <dbReference type="OMA" id="IMWNTRY"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="1">
        <location>
            <begin position="1"/>
            <end position="24"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5002735611" evidence="1">
        <location>
            <begin position="25"/>
            <end position="442"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX37430.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="442" mass="48144" checksum="453550366C7769D1" modified="2008-01-15" version="1">MQQRRWLTAAMAAGLGGAAMAAQAGTVTVLTSFPKELTTAYQKAFEAANPGIKIEILNKNTTAAVAYVRELPEGQRPDIMWASAPDAFEVLARNKLLTAAPETRNPAAPAKIGNYPLNDPQGLYYGQALAGYGIMWNTRYLKAHKLAAPKEWSDLTRPEYFGHIAISSPSRSGTTQLTVETILQGEGWDKGWRQLLSMMGNAAAVTDRSFAVPDGVNNGQYGIGIVIDFFGLAGKYSGFPVDFAYPAMTAVVPANIALIAGAKNADEARKFMAFTMSVPGQQLLFDPKISRLPILPYSQLKAPAGYPVPQEVAQRAKVQFDANLSESRYAVVISLFDQMVTFRLKELQAATRAIQEAHKALQAKPNAKGQELLAQARDIAYSPLVGEANVKDEQFLELFRKSRRDVAVSKELTGLEQMWADKARANYERAAKLAAEARGLAR</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="65" xmlns="http://uniprot.org/uniprot">
    <accession>A9BMA5</accession>
    <name>A9BMA5_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="7">Inner-membrane translocator</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ordered locus">Daci_4821</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="8" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX37450.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_4821"/>
    <dbReference type="PRIDE" id="A9BMA5"/>
    <dbReference type="EnsemblBacteria" id="ABX37450">
        <property type="protein sequence ID" value="ABX37450"/>
        <property type="gene ID" value="Daci_4821"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_4821"/>
    <dbReference type="eggNOG" id="COG4177">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_031365_2_1_4"/>
    <dbReference type="OMA" id="ANKASSW"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015658">
        <property type="term" value="F:branched-chain amino acid transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd06581">
        <property type="entry name" value="TM_PBP1_LivM_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001851">
        <property type="entry name" value="ABC_transp_permease"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043428">
        <property type="entry name" value="LivM-like"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30482">
        <property type="entry name" value="PTHR30482"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02653">
        <property type="entry name" value="BPD_transp_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="5 6" id="KW-0472">Membrane</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 6" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="4 6" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="80"/>
            <end position="100"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="106"/>
            <end position="125"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="132"/>
            <end position="150"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="156"/>
            <end position="176"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="185"/>
            <end position="203"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="236"/>
            <end position="256"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="323"/>
            <end position="349"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="361"/>
            <end position="383"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="ABX37450.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="400" mass="42018" checksum="C40C7302B4A65C8E" modified="2008-01-15" version="1">MPPLSGYAASRCTAPPSLATREGDDTLAAARRGRRRPLLGVPRFWATPVLCQTPWRTMMSTRSASSSDALVAATSARRPLPLGTVLIAALALAACSLVFVAKGYQLFQATMVLAYAVALVGLNILTGYSGQISLGHGAFFAIGAYAAGILMDRAGLAYWLAVPAAGLVSLAAGYLFGRPALRLEGLYLALATFALGVAMPQLLKYRHLEAWTGGVGGIVLTKPEAPWGLPLDADQWFYLYALAVAALLFWMARNLIDSGSGLALRAIRDHAMAAEAMGVDNAHCKSMAFAISAGYTGVGGALSAIAVQFVAPDSFTMFLSISLLVGVVVGGVGTLWGALFGALFIMFIPGLAEQVSKAAPWAVYGTVLIVFMFAMPGGVMGLLHRLGRPGRRLPRQRPRA</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="67" xmlns="http://uniprot.org/uniprot">
    <accession>A9BMD3</accession>
    <name>A9BMD3_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="6">Radical SAM domain protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ordered locus">Daci_4849</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="7" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>[4Fe-4S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:49883"/>
        </cofactor>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX37478.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012206648.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_4849"/>
    <dbReference type="PRIDE" id="A9BMD3"/>
    <dbReference type="EnsemblBacteria" id="ABX37478">
        <property type="protein sequence ID" value="ABX37478"/>
        <property type="gene ID" value="Daci_4849"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_4849"/>
    <dbReference type="eggNOG" id="COG4277">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_033784_0_0_4"/>
    <dbReference type="OMA" id="GYIHLKA"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003824">
        <property type="term" value="F:catalytic activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051536">
        <property type="term" value="F:iron-sulfur cluster binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.20.20.70">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013785">
        <property type="entry name" value="Aldolase_TIM"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023874">
        <property type="entry name" value="DNA_rSAM_put"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007197">
        <property type="entry name" value="rSAM"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010994">
        <property type="entry name" value="RuvA_2-like"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR21180:SF9">
        <property type="entry name" value="PTHR21180:SF9"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SFLD" id="SFLDS00029">
        <property type="entry name" value="Radical_SAM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SFLD" id="SFLDG01102">
        <property type="entry name" value="Uncharacterised_Radical_SAM_Su"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47781">
        <property type="entry name" value="SSF47781"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR03916">
        <property type="entry name" value="rSAM_link_UDG"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-0408">Iron</keyword>
    <keyword evidence="5" id="KW-0411">Iron-sulfur</keyword>
    <keyword evidence="3" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0949">S-adenosyl-L-methionine</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001966"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022691"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023004"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023014"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="ABX37478.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="439" mass="48699" checksum="7D936C7A9C07B03C" modified="2008-01-15" version="1">MELQRKLFILADAAKYDASCASSGSQGRDSLDGKGMGSVTGMGICHSYAPDGRCISLLKILLTNVCIFDCRYCINRKSSNVQRARFTVAEVVQLTLDFYRRNCIEGLFLSSGIIRSSDYTMEQLVEVARRLREEHDFRGYIHLKTIPDAAPELLAQAGRHADRLSINVELPTASGLALFAPEKDGQRIRQAMQGVDRHVQAWRAATREQRQAQSLPGAPAQRAAVPRFAPGGQSTQMIVGADRATDADILESSHTLYAGYGLRRVYYSAFSPIPDASRDLPPQAPPLMREHRLYQADWLMRFYGYGAGEIAAASRHGMLDLEIDPKLAWALANRQQFPVDLNRAPRSLLLRVPGLGTQTVDRLLAARRVRRLRLDDLLRLRAPVQKALPFVLIDGHRPLLGETDSAALRTRLIAQSQASQAQARHSGMRVQSALQASLF</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="53" xmlns="http://uniprot.org/uniprot">
    <accession>A9BMP3</accession>
    <name>A9BMP3_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="3">CBS domain containing protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Daci_4959</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="4" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX37588.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012206758.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_4959"/>
    <dbReference type="PRIDE" id="A9BMP3"/>
    <dbReference type="EnsemblBacteria" id="ABX37588">
        <property type="protein sequence ID" value="ABX37588"/>
        <property type="gene ID" value="Daci_4959"/>
    </dbReference>
    <dbReference type="GeneID" id="60689307"/>
    <dbReference type="KEGG" id="dac:Daci_4959"/>
    <dbReference type="eggNOG" id="COG0517">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_040681_3_1_4"/>
    <dbReference type="OMA" id="HHIRHVP"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.10.580.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000644">
        <property type="entry name" value="CBS_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR046342">
        <property type="entry name" value="CBS_dom_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00571">
        <property type="entry name" value="CBS"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SMART" id="SM00116">
        <property type="entry name" value="CBS"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54631">
        <property type="entry name" value="SSF54631"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51371">
        <property type="entry name" value="CBS"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0129">CBS domain</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="CBS" evidence="2">
        <location>
            <begin position="6"/>
            <end position="68"/>
        </location>
    </feature>
    <feature type="domain" description="CBS" evidence="2">
        <location>
            <begin position="74"/>
            <end position="130"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00703"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS51371"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ABX37588.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="150" mass="16910" checksum="57E8BC0146F7EE6C" modified="2008-01-15" version="1">MKVSDILRVKGNTLYTVSPDESLASAVQVMSERDIGSLVVMEHGDVVGMLTFREVIQGFVKHGGVGETLVRSAMDDAPMTCTMETDMDEVRRMMLDRHARYMPVMDKRMLMGVISLYDVAKAVVDSQNFENRMLKAYIRDWPEGERQGAD</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="52" xmlns="http://uniprot.org/uniprot">
    <accession>A9BN82</accession>
    <name>A9BN82_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_5148</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX37777.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012206947.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_5148"/>
    <dbReference type="PRIDE" id="A9BN82"/>
    <dbReference type="EnsemblBacteria" id="ABX37777">
        <property type="protein sequence ID" value="ABX37777"/>
        <property type="gene ID" value="Daci_5148"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_5148"/>
    <dbReference type="eggNOG" id="COG1073">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_042159_0_0_4"/>
    <dbReference type="OMA" id="GAVPMCG"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.1820">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029058">
        <property type="entry name" value="AB_hydrolase"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53474">
        <property type="entry name" value="SSF53474"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="1">
        <location>
            <begin position="1"/>
            <end position="21"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5002735835" evidence="1">
        <location>
            <begin position="22"/>
            <end position="479"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX37777.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="479" mass="50837" checksum="2EDA4950062CBDB9" modified="2008-01-15" version="1">MRALRWNRWKYLGLLAATGLAACGGGDGDAPEETRAQDSRSFAPANPSATSFDALAAASGDVVDNASTSRWAGVLEGAAYRIEVPANWNGRLVMYAHGYAGEGSALNVTNPSIRRYLIQNGYAWAASSYSKNYYDVRAGVEDTNALALAFNRLAASHGRPLAQPQRLYITGHSMGGHVTAAAIEAEAQATARNKVRYQGAVPMCGVTGDTELFDYFAAAQVTAQAMAGVAQRPVTEWAAIQGQVTSALFTTFPSAPTATGRAYLSVIQNLTGGPRPLFDLGVAVGGSFAPVWGVFGSDGSVNGILNRNVADTNRFTYRIDGDAAASAALNAAAQKRTAAPDANRPRRDGLRWIPVTSGDINIPVVTLHTLGDLYVPFSMEQIYQRRVADKGRSQWLVQRAIRGASHCDFTVAEQVEAFDAMVQWEQGGAKPGGDDVQTAATVAAPTYGCRYTRNTLGPDDSTTTRQLRAVISQNAASCP</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="46" xmlns="http://uniprot.org/uniprot">
    <accession>A9BN93</accession>
    <name>A9BN93_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Plasmid stabilization system</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_5159</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX37788.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012206958.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_5159"/>
    <dbReference type="PRIDE" id="A9BN93"/>
    <dbReference type="EnsemblBacteria" id="ABX37788">
        <property type="protein sequence ID" value="ABX37788"/>
        <property type="gene ID" value="Daci_5159"/>
    </dbReference>
    <dbReference type="GeneID" id="60689509"/>
    <dbReference type="KEGG" id="dac:Daci_5159"/>
    <dbReference type="eggNOG" id="COG3668">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_147162_1_0_4"/>
    <dbReference type="OMA" id="HIDVWRV"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.2310.20">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007712">
        <property type="entry name" value="RelE/ParE_toxin"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035093">
        <property type="entry name" value="RelE/ParE_toxin_dom_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF05016">
        <property type="entry name" value="ParE_toxin"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-1277">Toxin-antitoxin system</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022649"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX37788.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="109" mass="12522" checksum="1F81D25B735BB38D" modified="2008-01-15" version="1">MKAKAIVPREQANRDVEEILAWYLGEEAANAALGFIDALEKAYAHIGRHPATGSLRYAHELHLPGLRAWPLTRYPYMVFYVEHAHHVDVWRVLHGQRDLPAWMQEPDNG</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="46" xmlns="http://uniprot.org/uniprot">
    <accession>A9BN99</accession>
    <name>A9BN99_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_5165</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX37794.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012206964.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_5165"/>
    <dbReference type="PRIDE" id="A9BN99"/>
    <dbReference type="EnsemblBacteria" id="ABX37794">
        <property type="protein sequence ID" value="ABX37794"/>
        <property type="gene ID" value="Daci_5165"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_5165"/>
    <dbReference type="eggNOG" id="COG5319">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_112041_1_0_4"/>
    <dbReference type="OMA" id="ARRMHYG"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009562">
        <property type="entry name" value="DUF1178"/>
    </dbReference>
    <dbReference type="Pfam" id="PF06676">
        <property type="entry name" value="DUF1178"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF032131">
        <property type="entry name" value="UCP032131"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="59"/>
            <end position="91"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX37794.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="169" mass="18272" checksum="000E5404D98B4A03" modified="2008-01-15" version="1">MKVLDLHCPHGHLFEGWFASEDDFQGQLQRQLVLCPVCGHSDITKRLSAPRINLGAKPAATPPTAAAEPAAAASAASAAAVPSPSMPPQAREQLQAMQAAWLKWSRQVAQQTEDVGERFVDEARRMHYGETDERAIRGKASPEQAMQLLDEGIAVLPLALPEGSKETLQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="71" xmlns="http://uniprot.org/uniprot">
    <accession>A9BND2</accession>
    <name>A9BND2_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Fimbrial protein pilin</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_5198</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX37827.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_5198"/>
    <dbReference type="PRIDE" id="A9BND2"/>
    <dbReference type="EnsemblBacteria" id="ABX37827">
        <property type="protein sequence ID" value="ABX37827"/>
        <property type="gene ID" value="Daci_5198"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_5198"/>
    <dbReference type="eggNOG" id="COG4968">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_091705_6_1_4"/>
    <dbReference type="OMA" id="ERSHTTN"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043683">
        <property type="term" value="P:type IV pilus assembly"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012902">
        <property type="entry name" value="N_methyl_site"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR031982">
        <property type="entry name" value="PilE-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045584">
        <property type="entry name" value="Pilin-like"/>
    </dbReference>
    <dbReference type="Pfam" id="PF16732">
        <property type="entry name" value="ComP_DUS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07963">
        <property type="entry name" value="N_methyl"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54523">
        <property type="entry name" value="SSF54523"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR02532">
        <property type="entry name" value="IV_pilin_GFxxxE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00409">
        <property type="entry name" value="PROKAR_NTER_METHYL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="21"/>
            <end position="42"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX37827.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="148" mass="15730" checksum="E01E09EE4AF5E6C4" modified="2008-01-15" version="1">MTMPRSTNTIIMKRKNQGFTLIELMIVVAVVGILGAIAIPSYSEYIRRGHRAEARAGLLQAAQWLERASTATGTYPLTAAFPSALATVPSNRYDISLNSTDGRTFTLTATPKGAQTGDKCGNYTLTQSGLRGANGATTGTIVTDCWGK</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="92" xmlns="http://uniprot.org/uniprot">
    <accession>A9BNE7</accession>
    <name>A9BNE7_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="4 9">4-hydroxy-tetrahydrodipicolinate synthase</fullName>
            <shortName evidence="9">HTPA synthase</shortName>
            <ecNumber evidence="4 9">4.3.3.7</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="9" type="primary">dapA</name>
        <name evidence="11" type="ordered locus">Daci_5213</name>
    </gene>
    <organism evidence="11 12">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="11 12" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="12">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="12" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="12">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="2 9">Catalyzes the condensation of (S)-aspartate-beta-semialdehyde [(S)-ASA] and pyruvate to 4-hydroxy-tetrahydrodipicolinate (HTPA).</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1 9">
            <text>L-aspartate 4-semialdehyde + pyruvate = (2S,4S)-4-hydroxy-2,3,4,5-tetrahydrodipicolinate + H(+) + H2O</text>
            <dbReference type="Rhea" id="RHEA:34171"/>
            <dbReference type="ChEBI" id="CHEBI:15361"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:67139"/>
            <dbReference type="ChEBI" id="CHEBI:537519"/>
            <dbReference type="EC" id="4.3.3.7"/>
        </reaction>
    </comment>
    <comment type="pathway">
        <text evidence="3 9">Amino-acid biosynthesis; L-lysine biosynthesis via DAP pathway; (S)-tetrahydrodipicolinate from L-aspartate: step 3/4.</text>
    </comment>
    <comment type="subunit">
        <text evidence="9">Homotetramer; dimer of dimers.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="9">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="9 10">Belongs to the DapA family.</text>
    </comment>
    <comment type="caution">
        <text evidence="9">Was originally thought to be a dihydrodipicolinate synthase (DHDPS), catalyzing the condensation of (S)-aspartate-beta-semialdehyde [(S)-ASA] and pyruvate to dihydrodipicolinate (DHDP). However, it was shown in E.coli that the product of the enzymatic reaction is not dihydrodipicolinate but in fact (4S)-4-hydroxy-2,3,4,5-tetrahydro-(2S)-dipicolinic acid (HTPA), and that the consecutive dehydration reaction leading to DHDP is not spontaneous but catalyzed by DapB.</text>
    </comment>
    <dbReference type="EC" id="4.3.3.7" evidence="4 9"/>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX37842.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012207012.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_5213"/>
    <dbReference type="PRIDE" id="A9BNE7"/>
    <dbReference type="EnsemblBacteria" id="ABX37842">
        <property type="protein sequence ID" value="ABX37842"/>
        <property type="gene ID" value="Daci_5213"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_5213"/>
    <dbReference type="eggNOG" id="COG0329">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_049343_7_1_4"/>
    <dbReference type="OMA" id="YYGYGGF"/>
    <dbReference type="UniPathway" id="UPA00034">
        <property type="reaction ID" value="UER00017"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008840">
        <property type="term" value="F:4-hydroxy-tetrahydrodipicolinate synthase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0019877">
        <property type="term" value="P:diaminopimelate biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009089">
        <property type="term" value="P:lysine biosynthetic process via diaminopimelate"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniPathway"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.20.20.70">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00418">
        <property type="entry name" value="DapA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013785">
        <property type="entry name" value="Aldolase_TIM"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005263">
        <property type="entry name" value="DapA"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002220">
        <property type="entry name" value="DapA-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020625">
        <property type="entry name" value="Schiff_base-form_aldolases_AS"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR12128">
        <property type="entry name" value="PTHR12128"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00701">
        <property type="entry name" value="DHDPS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF001365">
        <property type="entry name" value="DHDPS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00146">
        <property type="entry name" value="DHPICSNTHASE"/>
    </dbReference>
    <dbReference type="SMART" id="SM01130">
        <property type="entry name" value="DHDPS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00674">
        <property type="entry name" value="dapA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00666">
        <property type="entry name" value="DHDPS_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5 9" id="KW-0028">Amino-acid biosynthesis</keyword>
    <keyword evidence="9" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="6 9" id="KW-0220">Diaminopimelate biosynthesis</keyword>
    <keyword evidence="9 10" id="KW-0456">Lyase</keyword>
    <keyword evidence="7 9" id="KW-0457">Lysine biosynthesis</keyword>
    <keyword evidence="12" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="8 9" id="KW-0704">Schiff base</keyword>
    <feature type="active site" description="Proton donor/acceptor" evidence="9">
        <location>
            <position position="145"/>
        </location>
    </feature>
    <feature type="active site" description="Schiff-base intermediate with substrate" evidence="9">
        <location>
            <position position="173"/>
        </location>
    </feature>
    <feature type="binding site" evidence="9">
        <location>
            <position position="58"/>
        </location>
        <ligand>
            <name>pyruvate</name>
            <dbReference type="ChEBI" id="CHEBI:15361"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="9">
        <location>
            <position position="213"/>
        </location>
        <ligand>
            <name>pyruvate</name>
            <dbReference type="ChEBI" id="CHEBI:15361"/>
        </ligand>
    </feature>
    <feature type="site" description="Part of a proton relay during catalysis" evidence="9">
        <location>
            <position position="57"/>
        </location>
    </feature>
    <feature type="site" description="Part of a proton relay during catalysis" evidence="9">
        <location>
            <position position="119"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00000594"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00003294"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00005120"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00012086"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022605"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022915"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023154"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00023270"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00418"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="PIRNR" id="PIRNR001365"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="EMBL" id="ABX37842.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="311" mass="32575" checksum="BD9414B5F2205102" modified="2008-01-15" version="1">MSLPSTTSPQARFKGLWLPLVTPFLPGDETAVDHEALRALVQHYNATGIAGYVACGSTAEAAALSEAEHDAALSTILSAAQGMPVVMGVSDCHLGHALARVQTLNALPLAGILVPAPHYIRPSQAGLLQWFTTIAERSAHPVIIYDIPYRTGVVLELATLRALAAHERIVAIKDCGGDAAKTQALIADGQLQVLAGEDAQIFSTLALGGAGAIAASAHAHTRHFVELMQCLERGDLPAARALWQPLQPHIAACFAEPNPAPIKALLAQQGRMRATLRAPMQPASAALAQRLAGIQLPQLPSADGVAERRSA</sequence>
</entry>
<entry dataset="Swiss-Prot" created="2009-03-24" modified="2022-08-03" version="76" xmlns="http://uniprot.org/uniprot">
    <accession>A9BNH8</accession>
    <name>TRPA_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Tryptophan synthase alpha chain</fullName>
            <ecNumber evidence="1">4.2.1.20</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="1" type="primary">trpA</name>
        <name type="ordered locus">Daci_5244</name>
    </gene>
    <organism>
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference key="1">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain>DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="1">The alpha subunit is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>(1S,2R)-1-C-(indol-3-yl)glycerol 3-phosphate + L-serine = D-glyceraldehyde 3-phosphate + H2O + L-tryptophan</text>
            <dbReference type="Rhea" id="RHEA:10532"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:33384"/>
            <dbReference type="ChEBI" id="CHEBI:57912"/>
            <dbReference type="ChEBI" id="CHEBI:58866"/>
            <dbReference type="ChEBI" id="CHEBI:59776"/>
            <dbReference type="EC" id="4.2.1.20"/>
        </reaction>
    </comment>
    <comment type="pathway">
        <text evidence="1">Amino-acid biosynthesis; L-tryptophan biosynthesis; L-tryptophan from chorismate: step 5/5.</text>
    </comment>
    <comment type="subunit">
        <text evidence="1">Tetramer of two alpha and two beta chains.</text>
    </comment>
    <comment type="similarity">
        <text evidence="1">Belongs to the TrpA family.</text>
    </comment>
    <dbReference type="EC" id="4.2.1.20" evidence="1"/>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX37873.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012207043.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A9BNH8"/>
    <dbReference type="SMR" id="A9BNH8"/>
    <dbReference type="STRING" id="398578.Daci_5244"/>
    <dbReference type="PRIDE" id="A9BNH8"/>
    <dbReference type="EnsemblBacteria" id="ABX37873">
        <property type="protein sequence ID" value="ABX37873"/>
        <property type="gene ID" value="Daci_5244"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_5244"/>
    <dbReference type="eggNOG" id="COG0159">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_016734_0_0_4"/>
    <dbReference type="OMA" id="LVMTYWN"/>
    <dbReference type="UniPathway" id="UPA00035">
        <property type="reaction ID" value="UER00044"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004834">
        <property type="term" value="F:tryptophan synthase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd04724">
        <property type="entry name" value="Tryptophan_synthase_alpha"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.20.20.70">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00131">
        <property type="entry name" value="Trp_synth_alpha"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013785">
        <property type="entry name" value="Aldolase_TIM"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011060">
        <property type="entry name" value="RibuloseP-bd_barrel"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018204">
        <property type="entry name" value="Trp_synthase_alpha_AS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002028">
        <property type="entry name" value="Trp_synthase_suA"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43406">
        <property type="entry name" value="PTHR43406"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00290">
        <property type="entry name" value="Trp_syntA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51366">
        <property type="entry name" value="SSF51366"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00262">
        <property type="entry name" value="trpA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00167">
        <property type="entry name" value="TRP_SYNTHASE_ALPHA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword id="KW-0028">Amino-acid biosynthesis</keyword>
    <keyword id="KW-0057">Aromatic amino acid biosynthesis</keyword>
    <keyword id="KW-0456">Lyase</keyword>
    <keyword id="KW-1185">Reference proteome</keyword>
    <keyword id="KW-0822">Tryptophan biosynthesis</keyword>
    <feature type="chain" id="PRO_1000095710" description="Tryptophan synthase alpha chain">
        <location>
            <begin position="1"/>
            <end position="269"/>
        </location>
    </feature>
    <feature type="active site" description="Proton acceptor" evidence="1">
        <location>
            <position position="49"/>
        </location>
    </feature>
    <feature type="active site" description="Proton acceptor" evidence="1">
        <location>
            <position position="60"/>
        </location>
    </feature>
    <evidence type="ECO:0000255" key="1">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00131"/>
        </source>
    </evidence>
    <sequence length="269" mass="28958" checksum="5EDF493F47F6D9D3" modified="2008-01-15" version="1">MSRITTTFAKLQEEGRKALIPYITAGFPFAAITPSLMHGMVEAGADVIELGVPFSDPMADGPTIQKAGDRAIANGVGLVQVLAYVREFRQKNQTTPVVLMGYANPVERYDQIHGKDRFVDDAAEAGVDGLLIVDYPPEECEAFAAQLRARDMDLIFLLAPTSTTERMQQVARVASGYVYYVSLKGVTGSGALDTAAVEAMLPRIREHVSIPVGVGFGIRDAATAQAISRVADAVVIGSRIIEMLDGQPHEKIVPLTIDFLRGVRKALDA</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="80" xmlns="http://uniprot.org/uniprot">
    <accession>A9BNT6</accession>
    <name>A9BNT6_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="8">ABC transporter related</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="8" type="ordered locus">Daci_5352</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="9" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX37981.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012207150.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_5352"/>
    <dbReference type="PRIDE" id="A9BNT6"/>
    <dbReference type="EnsemblBacteria" id="ABX37981">
        <property type="protein sequence ID" value="ABX37981"/>
        <property type="gene ID" value="Daci_5352"/>
    </dbReference>
    <dbReference type="GeneID" id="60689700"/>
    <dbReference type="KEGG" id="dac:Daci_5352"/>
    <dbReference type="eggNOG" id="COG0411">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_000604_1_2_4"/>
    <dbReference type="OMA" id="HHGQKIA"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003593">
        <property type="entry name" value="AAA+_ATPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003439">
        <property type="entry name" value="ABC_transporter-like_ATP-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017871">
        <property type="entry name" value="ABC_transporter-like_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR032823">
        <property type="entry name" value="BCA_ABC_TP_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00005">
        <property type="entry name" value="ABC_tran"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12399">
        <property type="entry name" value="BCA_ABC_TP_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00382">
        <property type="entry name" value="AAA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00211">
        <property type="entry name" value="ABC_TRANSPORTER_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50893">
        <property type="entry name" value="ABC_TRANSPORTER_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3 6" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="1" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="5" id="KW-0472">Membrane</keyword>
    <keyword evidence="2 6" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4" id="KW-1278">Translocase</keyword>
    <feature type="domain" description="ABC transporter" evidence="7">
        <location>
            <begin position="14"/>
            <end position="261"/>
        </location>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <begin position="46"/>
            <end position="53"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022967"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00434"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="PROSITE" id="PS50893"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="ABX37981.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="264" mass="28561" checksum="D975AD911B8BD97D" modified="2008-01-15" version="1">MANTADNGSTSPVLRVSGISKRFGGLQALSDVGMTIGRGQVYGLIGPNGAGKTTFFNVITGLYTPDSGSFELAGKAYEPSAVHKVAKAGIARTFQNIRLFAEMTALENVMVGRHVRTHSGLIGAVFRTPGFKAEEAAIRARARELLDYVGISKYADFKARTLSYGDQRRLEIARALATDPQLIALDEPAAGMNATEKVQLRELIDRIRRDQRTILLIEHDVKLVMGLCDRVTVLDYGKPIAEGTPAEVQKNDKVIEAYLGTGGH</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="60" xmlns="http://uniprot.org/uniprot">
    <accession>A9BP47</accession>
    <name>A9BP47_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Histidine triad (HIT) protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Daci_5463</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="4" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX38092.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012207261.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_5463"/>
    <dbReference type="PRIDE" id="A9BP47"/>
    <dbReference type="EnsemblBacteria" id="ABX38092">
        <property type="protein sequence ID" value="ABX38092"/>
        <property type="gene ID" value="Daci_5463"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_5463"/>
    <dbReference type="eggNOG" id="COG0537">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_123330_2_0_4"/>
    <dbReference type="OMA" id="FCRVIWN"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003824">
        <property type="term" value="F:catalytic activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.428.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011146">
        <property type="entry name" value="HIT-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036265">
        <property type="entry name" value="HIT-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR026026">
        <property type="entry name" value="HIT_Hint"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01230">
        <property type="entry name" value="HIT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF000714">
        <property type="entry name" value="HIT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54197">
        <property type="entry name" value="SSF54197"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51084">
        <property type="entry name" value="HIT_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HIT" evidence="2">
        <location>
            <begin position="5"/>
            <end position="106"/>
        </location>
    </feature>
    <feature type="short sequence motif" description="Histidine triad motif" evidence="1">
        <location>
            <begin position="91"/>
            <end position="95"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00464"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS51084"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ABX38092.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="151" mass="16767" checksum="CFEC0F073D149B87" modified="2008-01-15" version="1">MAAPASCPLCATEGGVPIWRGPRLRVIRAQEEGFPAFYRVVWNAHAAEFSDLDAADRQHCMDAVVVVERVLRERLAPAKINLAALGNMVPHLHWHVIARFDWDSHFPGAVWAPAQRPRNGEREAEVAARLPAIDTALVQALDAWQQHPATE</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="76" xmlns="http://uniprot.org/uniprot">
    <accession>A9BP78</accession>
    <name>A9BP78_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="5">NUDIX hydrolase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ordered locus">Daci_5494</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="6" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="2">Belongs to the Nudix hydrolase family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX38123.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012207292.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_5494"/>
    <dbReference type="PRIDE" id="A9BP78"/>
    <dbReference type="EnsemblBacteria" id="ABX38123">
        <property type="protein sequence ID" value="ABX38123"/>
        <property type="gene ID" value="Daci_5494"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_5494"/>
    <dbReference type="eggNOG" id="COG0494">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_037162_19_2_4"/>
    <dbReference type="OMA" id="KLEYQFP"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016787">
        <property type="term" value="F:hydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020476">
        <property type="entry name" value="Nudix_hydrolase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015797">
        <property type="entry name" value="NUDIX_hydrolase-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020084">
        <property type="entry name" value="NUDIX_hydrolase_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000086">
        <property type="entry name" value="NUDIX_hydrolase_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00293">
        <property type="entry name" value="NUDIX"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00502">
        <property type="entry name" value="NUDIXFAMILY"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55811">
        <property type="entry name" value="SSF55811"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51462">
        <property type="entry name" value="NUDIX"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00893">
        <property type="entry name" value="NUDIX_BOX"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="1 2 5" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Nudix hydrolase" evidence="4">
        <location>
            <begin position="28"/>
            <end position="154"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="3">
        <location>
            <begin position="1"/>
            <end position="29"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="3">
        <location>
            <begin position="11"/>
            <end position="25"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="RuleBase" id="RU003476"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="PROSITE" id="PS51462"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="ABX38123.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="172" mass="19171" checksum="3E41D66AA17885C4" modified="2008-01-15" version="1">MTEKEISLNAGADAAQSQPPSQAPAQRKHTEVAVGVLLRESDGALLITSRPPGKPYAGYWEFPGGKIESGETVEQALRRELQEELGVEIAAAPVWKVTEHDYPHALVRLHWCKITRWSGEFEMREGQQMAWQQLPLQVQPVLPGAYPVLQWLSEERGLPFDAGFYEAGQPKV</sequence>
</entry>
<entry dataset="Swiss-Prot" created="2009-04-14" modified="2022-08-03" version="87" xmlns="http://uniprot.org/uniprot">
    <accession>A9BP81</accession>
    <name>SECA_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Protein translocase subunit SecA</fullName>
            <ecNumber evidence="1">7.4.2.8</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="1" type="primary">secA</name>
        <name type="ordered locus">Daci_5497</name>
    </gene>
    <organism>
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference key="1">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain>DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="1">Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. Has a central role in coupling the hydrolysis of ATP to the transfer of proteins into and across the cell membrane, serving both as a receptor for the preprotein-SecB complex and as an ATP-driven molecular motor driving the stepwise translocation of polypeptide chains across the membrane.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>ATP + H2O + cellular proteinSide 1 = ADP + phosphate + cellular proteinSide 2.</text>
            <dbReference type="EC" id="7.4.2.8"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </cofactor>
        <text evidence="1">May bind 1 zinc ion per subunit.</text>
    </comment>
    <comment type="subunit">
        <text evidence="1">Monomer and homodimer. Part of the essential Sec protein translocation apparatus which comprises SecA, SecYEG and auxiliary proteins SecDF-YajC and YidC.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Cell inner membrane</location>
            <topology evidence="1">Peripheral membrane protein</topology>
            <orientation evidence="1">Cytoplasmic side</orientation>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="1">Cytoplasm</location>
        </subcellularLocation>
        <text evidence="1">Distribution is 50-50.</text>
    </comment>
    <comment type="similarity">
        <text evidence="1">Belongs to the SecA family.</text>
    </comment>
    <dbReference type="EC" id="7.4.2.8" evidence="1"/>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX38126.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012207295.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A9BP81"/>
    <dbReference type="SMR" id="A9BP81"/>
    <dbReference type="STRING" id="398578.Daci_5497"/>
    <dbReference type="PRIDE" id="A9BP81"/>
    <dbReference type="EnsemblBacteria" id="ABX38126">
        <property type="protein sequence ID" value="ABX38126"/>
        <property type="gene ID" value="Daci_5497"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_5497"/>
    <dbReference type="eggNOG" id="COG0653">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_005314_3_0_4"/>
    <dbReference type="OMA" id="MVHYDVQ"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008564">
        <property type="term" value="F:protein-exporting ATPase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0065002">
        <property type="term" value="P:intracellular protein transmembrane transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0017038">
        <property type="term" value="P:protein import"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006605">
        <property type="term" value="P:protein targeting"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd18803">
        <property type="entry name" value="SF2_C_secA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01382">
        <property type="entry name" value="SecA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014001">
        <property type="entry name" value="Helicase_ATP-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001650">
        <property type="entry name" value="Helicase_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004027">
        <property type="entry name" value="SEC_C_motif"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000185">
        <property type="entry name" value="SecA"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020937">
        <property type="entry name" value="SecA_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011115">
        <property type="entry name" value="SecA_DEAD"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014018">
        <property type="entry name" value="SecA_motor_DEAD"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011130">
        <property type="entry name" value="SecA_preprotein_X-link_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR044722">
        <property type="entry name" value="SecA_SF2_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011116">
        <property type="entry name" value="SecA_Wing/Scaffold"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036266">
        <property type="entry name" value="SecA_Wing/Scaffold_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036670">
        <property type="entry name" value="SecA_X-link_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30612">
        <property type="entry name" value="PTHR30612"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02810">
        <property type="entry name" value="SEC-C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07517">
        <property type="entry name" value="SecA_DEAD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01043">
        <property type="entry name" value="SecA_PP_bind"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07516">
        <property type="entry name" value="SecA_SW"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00906">
        <property type="entry name" value="SECA"/>
    </dbReference>
    <dbReference type="SMART" id="SM00957">
        <property type="entry name" value="SecA_DEAD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00958">
        <property type="entry name" value="SecA_PP_bind"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF81767">
        <property type="entry name" value="SSF81767"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF81886">
        <property type="entry name" value="SSF81886"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00963">
        <property type="entry name" value="secA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01312">
        <property type="entry name" value="SECA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51196">
        <property type="entry name" value="SECA_MOTOR_DEAD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword id="KW-0067">ATP-binding</keyword>
    <keyword id="KW-0997">Cell inner membrane</keyword>
    <keyword id="KW-1003">Cell membrane</keyword>
    <keyword id="KW-0963">Cytoplasm</keyword>
    <keyword id="KW-0472">Membrane</keyword>
    <keyword id="KW-0479">Metal-binding</keyword>
    <keyword id="KW-0547">Nucleotide-binding</keyword>
    <keyword id="KW-0653">Protein transport</keyword>
    <keyword id="KW-1185">Reference proteome</keyword>
    <keyword id="KW-1278">Translocase</keyword>
    <keyword id="KW-0811">Translocation</keyword>
    <keyword id="KW-0813">Transport</keyword>
    <keyword id="KW-0862">Zinc</keyword>
    <feature type="chain" id="PRO_1000145001" description="Protein translocase subunit SecA">
        <location>
            <begin position="1"/>
            <end position="915"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="866"/>
            <end position="915"/>
        </location>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <position position="87"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <begin position="105"/>
            <end position="109"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <position position="516"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <position position="899"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <position position="901"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <position position="910"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <position position="911"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000255" key="1">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01382"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <sequence length="915" mass="103596" checksum="640A348440A24AB6" modified="2008-01-15" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="57" xmlns="http://uniprot.org/uniprot">
    <accession>A9BPD0</accession>
    <name>A9BPD0_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Daci_0151</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="2" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX32797.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_0151"/>
    <dbReference type="PRIDE" id="A9BPD0"/>
    <dbReference type="EnsemblBacteria" id="ABX32797">
        <property type="protein sequence ID" value="ABX32797"/>
        <property type="gene ID" value="Daci_0151"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_0151"/>
    <dbReference type="eggNOG" id="COG3758">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_090931_5_0_4"/>
    <dbReference type="OMA" id="ETREICC"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.120.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014710">
        <property type="entry name" value="RmlC-like_jellyroll"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011051">
        <property type="entry name" value="RmlC_Cupin_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010282">
        <property type="entry name" value="Uncharacterised_HutD/Ves"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37943">
        <property type="entry name" value="PTHR37943"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF05962">
        <property type="entry name" value="HutD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51182">
        <property type="entry name" value="SSF51182"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ABX32797.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="192" mass="20578" checksum="61ACDDFE485BD5FA" modified="2008-01-15" version="1">MQDTTAMQRFDLNQIAASPWKNGGGSTREIACWPPGAGMEAFGWRISVATIDQPGPFSAFAGVDRQIMLLDGDGVHLRGEGIDHVLDARWQPFAFSGDVALGCSLLGGTSTDFNVMARRGRWRAQVQVLDSAADAGRADAGLCMVLQGNWQADGAALIPGQGLWWSAQQPDPQQLVPQTDDARLVQVLLQAC</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="86" xmlns="http://uniprot.org/uniprot">
    <accession>A9BPD3</accession>
    <name>A9BPD3_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="6">Histidinol-phosphate aminotransferase</fullName>
            <ecNumber evidence="6">2.6.1.9</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="6">Imidazole acetol-phosphate transaminase</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="6" type="primary">hisC</name>
        <name evidence="8" type="ordered locus">Daci_0154</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="9" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="6">
            <text>2-oxoglutarate + L-histidinol phosphate = 3-(imidazol-4-yl)-2-oxopropyl phosphate + L-glutamate</text>
            <dbReference type="Rhea" id="RHEA:23744"/>
            <dbReference type="ChEBI" id="CHEBI:16810"/>
            <dbReference type="ChEBI" id="CHEBI:29985"/>
            <dbReference type="ChEBI" id="CHEBI:57766"/>
            <dbReference type="ChEBI" id="CHEBI:57980"/>
            <dbReference type="EC" id="2.6.1.9"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="2 6">
            <name>pyridoxal 5'-phosphate</name>
            <dbReference type="ChEBI" id="CHEBI:597326"/>
        </cofactor>
    </comment>
    <comment type="pathway">
        <text evidence="3 6">Amino-acid biosynthesis; L-histidine biosynthesis; L-histidine from 5-phospho-alpha-D-ribose 1-diphosphate: step 7/9.</text>
    </comment>
    <comment type="subunit">
        <text evidence="4 6">Homodimer.</text>
    </comment>
    <comment type="similarity">
        <text evidence="6">Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family. Histidinol-phosphate aminotransferase subfamily.</text>
    </comment>
    <dbReference type="EC" id="2.6.1.9" evidence="6"/>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX32800.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012202093.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_0154"/>
    <dbReference type="PRIDE" id="A9BPD3"/>
    <dbReference type="EnsemblBacteria" id="ABX32800">
        <property type="protein sequence ID" value="ABX32800"/>
        <property type="gene ID" value="Daci_0154"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_0154"/>
    <dbReference type="eggNOG" id="COG0079">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_017584_3_3_4"/>
    <dbReference type="OMA" id="NYHVAGF"/>
    <dbReference type="UniPathway" id="UPA00031">
        <property type="reaction ID" value="UER00012"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004400">
        <property type="term" value="F:histidinol-phosphate transaminase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030170">
        <property type="term" value="F:pyridoxal phosphate binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000105">
        <property type="term" value="P:histidine biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.640.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.1150.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01023">
        <property type="entry name" value="HisC_aminotrans_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001917">
        <property type="entry name" value="Aminotrans_II_pyridoxalP_BS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004839">
        <property type="entry name" value="Aminotransferase_I/II"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005861">
        <property type="entry name" value="HisP_aminotrans"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015424">
        <property type="entry name" value="PyrdxlP-dep_Trfase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015421">
        <property type="entry name" value="PyrdxlP-dep_Trfase_major"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015422">
        <property type="entry name" value="PyrdxlP-dep_Trfase_small"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00155">
        <property type="entry name" value="Aminotran_1_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53383">
        <property type="entry name" value="SSF53383"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01141">
        <property type="entry name" value="hisC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00599">
        <property type="entry name" value="AA_TRANSFER_CLASS_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="6" id="KW-0028">Amino-acid biosynthesis</keyword>
    <keyword evidence="5 6 8" id="KW-0032">Aminotransferase</keyword>
    <keyword evidence="6" id="KW-0368">Histidine biosynthesis</keyword>
    <keyword evidence="6" id="KW-0663">Pyridoxal phosphate</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="6 8" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Aminotran_1_2" evidence="7">
        <location>
            <begin position="41"/>
            <end position="373"/>
        </location>
    </feature>
    <feature type="modified residue" description="N6-(pyridoxal phosphate)lysine" evidence="6">
        <location>
            <position position="235"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001045"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00001933"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00005011"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00011738"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022576"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01023"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="Pfam" id="PF00155"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="ABX32800.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="381" mass="40787" checksum="3A3C56C033BCEC5A" modified="2008-01-15" version="1">MNAPAIHAIHTLARPEVPPLPPYNAGLSSEAVRARYGVTEIARLASNENPFGASPAVARALADLALHVGTYPDAQCTALRAAIAVRTGVPAEAIAVGNGSEDILQMLCQAFLSPGDRVLTQRPAFGLHEIYPRMMGARVELLELTPALGFDVDAWCQALARGPKIAMLANPSNPVGCMFSAGDFARLLDATPPQTLMVVDEAYYEYALHADGYPDVLALLRGRAMPWIVLRTFSKAWGLAGLRVGYGLASDAALVQLLDRVRTPFNVNQAAQAAALAAWGDEGFMQRGVAETVRLRDVLAQRLAALPALPALRMAPSAANFLFIDIGRPNGPVNEALLARGIITKPWKEPGFEHFIRVSVGTEADNERFVRALAEILEAGQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="86" xmlns="http://uniprot.org/uniprot">
    <accession>A9BPL0</accession>
    <name>A9BPL0_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="6">GntR domain protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ordered locus">Daci_0231</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="7" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX32877.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012202170.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_0231"/>
    <dbReference type="PRIDE" id="A9BPL0"/>
    <dbReference type="EnsemblBacteria" id="ABX32877">
        <property type="protein sequence ID" value="ABX32877"/>
        <property type="gene ID" value="Daci_0231"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_0231"/>
    <dbReference type="eggNOG" id="COG2186">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_017584_9_1_4"/>
    <dbReference type="OMA" id="SAQMRQH"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003700">
        <property type="term" value="F:DNA-binding transcription factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd07377">
        <property type="entry name" value="WHTH_GntR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.120.530">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011711">
        <property type="entry name" value="GntR_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012318">
        <property type="entry name" value="HTH_CRP"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008920">
        <property type="entry name" value="TF_FadR/GntR_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000524">
        <property type="entry name" value="Tscrpt_reg_HTH_GntR"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036390">
        <property type="entry name" value="WH_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07729">
        <property type="entry name" value="FCD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00392">
        <property type="entry name" value="GntR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00035">
        <property type="entry name" value="HTHGNTR"/>
    </dbReference>
    <dbReference type="SMART" id="SM00895">
        <property type="entry name" value="FCD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00419">
        <property type="entry name" value="HTH_CRP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00345">
        <property type="entry name" value="HTH_GNTR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46785">
        <property type="entry name" value="SSF46785"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48008">
        <property type="entry name" value="SSF48008"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50949">
        <property type="entry name" value="HTH_GNTR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0804">Transcription</keyword>
    <keyword evidence="1" id="KW-0805">Transcription regulation</keyword>
    <feature type="domain" description="HTH gntR-type" evidence="5">
        <location>
            <begin position="2"/>
            <end position="70"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="4">
        <location>
            <begin position="226"/>
            <end position="268"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023015"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023163"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="PROSITE" id="PS50949"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="ABX32877.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="268" mass="28207" checksum="B5ED3FD42CBF86EE" modified="2008-01-15" version="1">MQSIPISMAQTLQQHILSGHYPGGSQLPPQRELARQLGISRASLREALSMLEALGLVEIQPGKGVRINGPHSGRARMHRAYATPALGTLSPRQLIELRLVLEPGWAALAAVRADDSGLRQLQWTQSQLAHALARSDLLAAADADLQFHLLLAQLSGNPGLVAMARQLELAISHSLRLPFAWSGADDQPVREHDAIVQAVCAGDAPGAAGAMRAHLLSAARRSGIDLDTPDNAAASDATAPDATAPDTSAPDPDPLSFRLTPPSEGAFA</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="90" xmlns="http://uniprot.org/uniprot">
    <accession>A9BPL8</accession>
    <name>A9BPL8_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Acetylornithine deacetylase (ArgE)</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ordered locus">Daci_0239</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="6" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the peptidase M20A family. ArgE subfamily.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX32885.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_0239"/>
    <dbReference type="PRIDE" id="A9BPL8"/>
    <dbReference type="EnsemblBacteria" id="ABX32885">
        <property type="protein sequence ID" value="ABX32885"/>
        <property type="gene ID" value="Daci_0239"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_0239"/>
    <dbReference type="eggNOG" id="COG0624">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_021802_2_4_4"/>
    <dbReference type="OMA" id="STFEPTM"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008777">
        <property type="term" value="F:acetylornithine deacetylase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006526">
        <property type="term" value="P:arginine biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniPathway"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010169">
        <property type="entry name" value="AcOrn-deacetyl"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001261">
        <property type="entry name" value="ArgE/DapE_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036264">
        <property type="entry name" value="Bact_exopeptidase_dim_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002933">
        <property type="entry name" value="Peptidase_M20"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011650">
        <property type="entry name" value="Peptidase_M20_dimer"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07687">
        <property type="entry name" value="M20_dimer"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01546">
        <property type="entry name" value="Peptidase_M20"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55031">
        <property type="entry name" value="SSF55031"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01892">
        <property type="entry name" value="AcOrn-deacetyl"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00759">
        <property type="entry name" value="ARGE_DAPE_CPG2_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2" id="KW-0028">Amino-acid biosynthesis</keyword>
    <keyword evidence="2" id="KW-0055">Arginine biosynthesis</keyword>
    <keyword evidence="3" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="M20_dimer" evidence="4">
        <location>
            <begin position="217"/>
            <end position="327"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00005691"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022571"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="Pfam" id="PF07687"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="ABX32885.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="428" mass="46834" checksum="A2191C3F80F31DC6" modified="2008-01-15" version="1">MGRRACPGRNPGVHCFAICNAYAMACVVHEGRRRPWRRWNHMTTWKNTRDWLETLVAFDTTSRNSNLALIECVRDELATLGVSARLFHSPDGAKANLFATLPAHNGETQGGIVLSGHTDVVPVDGQQWSTNPFALTEKGGRLYGRGSCDMKGFIAASLALVPEFLATQRARPVHLAFSYDEEIGCAGAPVMINQLKAEGARFDGCVVGEPTSMQVVVAHKGINLYRCRVHGKAAHSSLTPRGSNAIEYAARLICRIRDIADHFKAHGPYDEFFDVPFTTMTTNQIQGGIAVNTIPELCEFAYEFRNLPGMSVDGIQAQVESYVRDELLPRMRAEFADARIEIETGASAPALEASEEAAITQLVRALTADQEKRKVAYGTEAGLFHNAGIPTVVCGPGSIEQAHKPDEFVELAQLDACERFLRKMGTSL</sequence>
</entry>
<entry dataset="Swiss-Prot" created="2009-03-24" modified="2022-08-03" version="70" xmlns="http://uniprot.org/uniprot">
    <accession>A9BPN0</accession>
    <name>GATC_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit C</fullName>
            <shortName evidence="1">Asp/Glu-ADT subunit C</shortName>
            <ecNumber evidence="1">6.3.5.-</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="1" type="primary">gatC</name>
        <name type="ordered locus">Daci_0353</name>
    </gene>
    <organism>
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference key="1">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain>DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="1">Allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA(Gln).</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>ATP + H2O + L-glutamine + L-glutamyl-tRNA(Gln) = ADP + H(+) + L-glutamate + L-glutaminyl-tRNA(Gln) + phosphate</text>
            <dbReference type="Rhea" id="RHEA:17521"/>
            <dbReference type="Rhea" id="RHEA-COMP:9681"/>
            <dbReference type="Rhea" id="RHEA-COMP:9684"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:29985"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:43474"/>
            <dbReference type="ChEBI" id="CHEBI:58359"/>
            <dbReference type="ChEBI" id="CHEBI:78520"/>
            <dbReference type="ChEBI" id="CHEBI:78521"/>
            <dbReference type="ChEBI" id="CHEBI:456216"/>
        </reaction>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>ATP + H2O + L-aspartyl-tRNA(Asn) + L-glutamine = ADP + 2 H(+) + L-asparaginyl-tRNA(Asn) + L-glutamate + phosphate</text>
            <dbReference type="Rhea" id="RHEA:14513"/>
            <dbReference type="Rhea" id="RHEA-COMP:9674"/>
            <dbReference type="Rhea" id="RHEA-COMP:9677"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:29985"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:43474"/>
            <dbReference type="ChEBI" id="CHEBI:58359"/>
            <dbReference type="ChEBI" id="CHEBI:78515"/>
            <dbReference type="ChEBI" id="CHEBI:78516"/>
            <dbReference type="ChEBI" id="CHEBI:456216"/>
        </reaction>
    </comment>
    <comment type="subunit">
        <text evidence="1">Heterotrimer of A, B and C subunits.</text>
    </comment>
    <comment type="similarity">
        <text evidence="1">Belongs to the GatC family.</text>
    </comment>
    <dbReference type="EC" id="6.3.5.-" evidence="1"/>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX32999.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012202292.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A9BPN0"/>
    <dbReference type="SMR" id="A9BPN0"/>
    <dbReference type="STRING" id="398578.Daci_0353"/>
    <dbReference type="PRIDE" id="A9BPN0"/>
    <dbReference type="EnsemblBacteria" id="ABX32999">
        <property type="protein sequence ID" value="ABX32999"/>
        <property type="gene ID" value="Daci_0353"/>
    </dbReference>
    <dbReference type="GeneID" id="60690758"/>
    <dbReference type="KEGG" id="dac:Daci_0353"/>
    <dbReference type="eggNOG" id="COG0721">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_105899_2_2_4"/>
    <dbReference type="OMA" id="VTPMAMK"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0050566">
        <property type="term" value="F:asparaginyl-tRNA synthase (glutamine-hydrolyzing) activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="RHEA"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0050567">
        <property type="term" value="F:glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006450">
        <property type="term" value="P:regulation of translational fidelity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006412">
        <property type="term" value="P:translation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00122">
        <property type="entry name" value="GatC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003837">
        <property type="entry name" value="Asp/Glu-ADT_csu"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036113">
        <property type="entry name" value="Asp/Glu-ADT_sf_sub_c"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR15004">
        <property type="entry name" value="PTHR15004"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02686">
        <property type="entry name" value="Glu-tRNAGln"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF141000">
        <property type="entry name" value="SSF141000"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00135">
        <property type="entry name" value="gatC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword id="KW-0067">ATP-binding</keyword>
    <keyword id="KW-0436">Ligase</keyword>
    <keyword id="KW-0547">Nucleotide-binding</keyword>
    <keyword id="KW-0648">Protein biosynthesis</keyword>
    <keyword id="KW-1185">Reference proteome</keyword>
    <feature type="chain" id="PRO_1000095281" description="Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit C">
        <location>
            <begin position="1"/>
            <end position="99"/>
        </location>
    </feature>
    <evidence type="ECO:0000255" key="1">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00122"/>
        </source>
    </evidence>
    <sequence length="99" mass="10827" checksum="5EC2BF11209ACDCD" modified="2008-01-15" version="1">MALNAQDIARIANLARLELSSTESERMLGQLNDFFGIVEKMQAVDTSGVSPLSHPVAAIQDIALRLREDIASEPDQRDANQRSAPAVERGLFLVPKVIE</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="69" xmlns="http://uniprot.org/uniprot">
    <accession>A9BPN4</accession>
    <name>A9BPN4_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">Peptidoglycan D,D-transpeptidase MrdA</fullName>
            <ecNumber evidence="2">3.4.16.4</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="2">Penicillin-binding protein 2</fullName>
            <shortName evidence="2">PBP-2</shortName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="2" type="primary">mrdA</name>
        <name evidence="6" type="ordered locus">Daci_0357</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="7" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="2">Catalyzes cross-linking of the peptidoglycan cell wall.</text>
    </comment>
    <comment type="pathway">
        <text evidence="2">Cell wall biogenesis; peptidoglycan biosynthesis.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="2">Cell inner membrane</location>
            <topology evidence="2">Single-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the transpeptidase family. MrdA subfamily.</text>
    </comment>
    <dbReference type="EC" id="3.4.16.4" evidence="2"/>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX33003.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012202296.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_0357"/>
    <dbReference type="PRIDE" id="A9BPN4"/>
    <dbReference type="EnsemblBacteria" id="ABX33003">
        <property type="protein sequence ID" value="ABX33003"/>
        <property type="gene ID" value="Daci_0357"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_0357"/>
    <dbReference type="eggNOG" id="COG0768">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_009289_4_2_4"/>
    <dbReference type="OMA" id="SCDTYYY"/>
    <dbReference type="UniPathway" id="UPA00219"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005887">
        <property type="term" value="C:integral component of plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016757">
        <property type="term" value="F:glycosyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008658">
        <property type="term" value="F:penicillin binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009002">
        <property type="term" value="F:serine-type D-Ala-D-Ala carboxypeptidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0071555">
        <property type="term" value="P:cell wall organization"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009252">
        <property type="term" value="P:peptidoglycan biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006508">
        <property type="term" value="P:proteolysis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008360">
        <property type="term" value="P:regulation of cell shape"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.710.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_02081">
        <property type="entry name" value="MrdA_transpept"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012338">
        <property type="entry name" value="Beta-lactam/transpept-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005311">
        <property type="entry name" value="PBP_dimer"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036138">
        <property type="entry name" value="PBP_dimer_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001460">
        <property type="entry name" value="PCN-bd_Tpept"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017790">
        <property type="entry name" value="Penicillin-binding_protein_2"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03717">
        <property type="entry name" value="PBP_dimer"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00905">
        <property type="entry name" value="Transpeptidase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56519">
        <property type="entry name" value="SSF56519"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56601">
        <property type="entry name" value="SSF56601"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR03423">
        <property type="entry name" value="pbp2_mrdA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2" id="KW-0121">Carboxypeptidase</keyword>
    <keyword evidence="2" id="KW-0997">Cell inner membrane</keyword>
    <keyword evidence="2" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="2" id="KW-0133">Cell shape</keyword>
    <keyword evidence="2" id="KW-0961">Cell wall biogenesis/degradation</keyword>
    <keyword evidence="6" id="KW-0328">Glycosyltransferase</keyword>
    <keyword evidence="2" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="1 2" id="KW-0472">Membrane</keyword>
    <keyword evidence="2" id="KW-0573">Peptidoglycan synthesis</keyword>
    <keyword evidence="2" id="KW-0645">Protease</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="6" id="KW-0808">Transferase</keyword>
    <keyword evidence="2" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="2" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="18"/>
            <end position="37"/>
        </location>
    </feature>
    <feature type="domain" description="PBP_dimer" evidence="5">
        <location>
            <begin position="60"/>
            <end position="234"/>
        </location>
    </feature>
    <feature type="domain" description="Transpeptidase" evidence="4">
        <location>
            <begin position="267"/>
            <end position="604"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="3">
        <location>
            <begin position="648"/>
            <end position="681"/>
        </location>
    </feature>
    <feature type="active site" description="Acyl-ester intermediate" evidence="2">
        <location>
            <position position="326"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_02081"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="Pfam" id="PF00905"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="Pfam" id="PF03717"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="ABX33003.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="681" mass="74940" checksum="1DC3E906FB1FD77D" modified="2008-01-15" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="88" xmlns="http://uniprot.org/uniprot">
    <accession>A9BQC0</accession>
    <name>A9BQC0_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">DNA topoisomerase</fullName>
            <ecNumber evidence="3">5.6.2.1</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="10">Omega-protein</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="9">Relaxing enzyme</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="7">Swivelase</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="8">Untwisting enzyme</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="14" type="ordered locus">Daci_0884</name>
    </gene>
    <organism evidence="14 15">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="14 15" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="15">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="15" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="15">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>ATP-independent breakage of single-stranded DNA, followed by passage and rejoining.</text>
            <dbReference type="EC" id="5.6.2.1"/>
        </reaction>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the type IA topoisomerase family.</text>
    </comment>
    <dbReference type="EC" id="5.6.2.1" evidence="3"/>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX33530.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012202816.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_0884"/>
    <dbReference type="PRIDE" id="A9BQC0"/>
    <dbReference type="EnsemblBacteria" id="ABX33530">
        <property type="protein sequence ID" value="ABX33530"/>
        <property type="gene ID" value="Daci_0884"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_0884"/>
    <dbReference type="eggNOG" id="COG0550">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="eggNOG" id="COG5531">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_002929_5_2_4"/>
    <dbReference type="OMA" id="YAQPKQR"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003917">
        <property type="term" value="F:DNA topoisomerase type I (single strand cut, ATP-independent) activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006265">
        <property type="term" value="P:DNA topological change"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd00186">
        <property type="entry name" value="TOP1Ac"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="CDD" id="cd03362">
        <property type="entry name" value="TOPRIM_TopoIA_TopoIII"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.245.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.290.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.460.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.70.20.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019835">
        <property type="entry name" value="SWIB_domain"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036885">
        <property type="entry name" value="SWIB_MDM2_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003121">
        <property type="entry name" value="SWIB_MDM2_domain"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000380">
        <property type="entry name" value="Topo_IA"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003601">
        <property type="entry name" value="Topo_IA_2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023406">
        <property type="entry name" value="Topo_IA_AS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013497">
        <property type="entry name" value="Topo_IA_cen"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013824">
        <property type="entry name" value="Topo_IA_cen_sub1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013825">
        <property type="entry name" value="Topo_IA_cen_sub2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013826">
        <property type="entry name" value="Topo_IA_cen_sub3"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023405">
        <property type="entry name" value="Topo_IA_core_domain"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003602">
        <property type="entry name" value="Topo_IA_DNA-bd_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005738">
        <property type="entry name" value="TopoIII"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025589">
        <property type="entry name" value="Toprim_C_rpt"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006171">
        <property type="entry name" value="TOPRIM_domain"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR034144">
        <property type="entry name" value="TOPRIM_TopoIII"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11390">
        <property type="entry name" value="PTHR11390"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02201">
        <property type="entry name" value="SWIB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01131">
        <property type="entry name" value="Topoisom_bac"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01751">
        <property type="entry name" value="Toprim"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13342">
        <property type="entry name" value="Toprim_Crpt"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00417">
        <property type="entry name" value="PRTPISMRASEI"/>
    </dbReference>
    <dbReference type="SMART" id="SM00151">
        <property type="entry name" value="SWIB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00437">
        <property type="entry name" value="TOP1Ac"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00436">
        <property type="entry name" value="TOP1Bc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00493">
        <property type="entry name" value="TOPRIM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47592">
        <property type="entry name" value="SSF47592"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56712">
        <property type="entry name" value="SSF56712"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01056">
        <property type="entry name" value="topB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51925">
        <property type="entry name" value="SWIB_MDM2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00396">
        <property type="entry name" value="TOPOISOMERASE_I_PROK"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50880">
        <property type="entry name" value="TOPRIM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="6 14" id="KW-0413">Isomerase</keyword>
    <keyword evidence="15" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4" id="KW-0799">Topoisomerase</keyword>
    <feature type="domain" description="Toprim" evidence="12">
        <location>
            <begin position="3"/>
            <end position="140"/>
        </location>
    </feature>
    <feature type="domain" description="SWIB/MDM2" evidence="13">
        <location>
            <begin position="898"/>
            <end position="975"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="11">
        <location>
            <begin position="473"/>
            <end position="508"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="11">
        <location>
            <begin position="854"/>
            <end position="900"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="11">
        <location>
            <begin position="883"/>
            <end position="899"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00000213"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00009446"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00012891"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023029"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023235"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00030003"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00031985"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00032235"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00032877"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="12">
        <source>
            <dbReference type="PROSITE" id="PS50880"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="13">
        <source>
            <dbReference type="PROSITE" id="PS51925"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="14">
        <source>
            <dbReference type="EMBL" id="ABX33530.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="15">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="975" mass="107379" checksum="CF5CBAAEDA847ED6" modified="2008-01-15" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="64" xmlns="http://uniprot.org/uniprot">
    <accession>A9BQE4</accession>
    <name>A9BQE4_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="6">Pirin domain protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ordered locus">Daci_0908</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="7" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1 2">Belongs to the pirin family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX33554.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012202840.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_0908"/>
    <dbReference type="PRIDE" id="A9BQE4"/>
    <dbReference type="EnsemblBacteria" id="ABX33554">
        <property type="protein sequence ID" value="ABX33554"/>
        <property type="gene ID" value="Daci_0908"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_0908"/>
    <dbReference type="eggNOG" id="COG1741">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_833215_0_0_4"/>
    <dbReference type="OMA" id="PHPHRGM"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.120.10">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012093">
        <property type="entry name" value="Pirin"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008778">
        <property type="entry name" value="Pirin_C_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003829">
        <property type="entry name" value="Pirin_N_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014710">
        <property type="entry name" value="RmlC-like_jellyroll"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011051">
        <property type="entry name" value="RmlC_Cupin_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR13903">
        <property type="entry name" value="PTHR13903"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02678">
        <property type="entry name" value="Pirin"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF05726">
        <property type="entry name" value="Pirin_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF006232">
        <property type="entry name" value="Pirin"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51182">
        <property type="entry name" value="SSF51182"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Pirin" evidence="4">
        <location>
            <begin position="51"/>
            <end position="143"/>
        </location>
    </feature>
    <feature type="domain" description="Pirin_C" evidence="5">
        <location>
            <begin position="211"/>
            <end position="315"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="3">
        <location>
            <begin position="328"/>
            <end position="348"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00008416"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="RuleBase" id="RU003457"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="Pfam" id="PF02678"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="Pfam" id="PF05726"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="ABX33554.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="348" mass="37969" checksum="781FA51BBD7660A1" modified="2008-01-15" version="1">MTAATTPVLQSQPLGPLWPTMDPFLFCAHHDDAYPPSDGRLGVQAVDLEGRQMGSDFSRKDGFSMYHGDGVPGFPGHPHRGFETVTLVRKGLIDHSDSLGAAARFGGGDVQWLTAGKGIQHSEMFPLLNSDAPNPLELFQIWLNLPARSKMVEPHFTMFWNERIPRLEHADAAGRRTVVTVVAGSLPGTAAALPPPPESWASQPEGDVAIWTLRLEPGARWTLPRAAGADTQRMLYFFAGQALQVGPTALAQHAALHVDATQDWELHNSGADAVECLVLQGRPIGESVAQYGPFVMNTQQEIMQAMQDYRRTQFGGWPWAEQDPVHGAENRRFARYPGAAAEEQPPAA</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="95" xmlns="http://uniprot.org/uniprot">
    <accession>A9BQR7</accession>
    <name>A9BQR7_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="6">Two component transcriptional regulator, winged helix family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ordered locus">Daci_0123</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="7" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX32769.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012202062.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_0123"/>
    <dbReference type="PRIDE" id="A9BQR7"/>
    <dbReference type="EnsemblBacteria" id="ABX32769">
        <property type="protein sequence ID" value="ABX32769"/>
        <property type="gene ID" value="Daci_0123"/>
    </dbReference>
    <dbReference type="GeneID" id="60690529"/>
    <dbReference type="KEGG" id="dac:Daci_0123"/>
    <dbReference type="eggNOG" id="COG0745">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_000445_30_4_4"/>
    <dbReference type="OMA" id="GYRFRQP"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000160">
        <property type="term" value="P:phosphorelay signal transduction system"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006355">
        <property type="term" value="P:regulation of transcription, DNA-templated"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd00383">
        <property type="entry name" value="trans_reg_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011006">
        <property type="entry name" value="CheY-like_superfamily"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001867">
        <property type="entry name" value="OmpR/PhoB-type_DNA-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016032">
        <property type="entry name" value="Sig_transdc_resp-reg_C-effctor"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001789">
        <property type="entry name" value="Sig_transdc_resp-reg_receiver"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR039420">
        <property type="entry name" value="WalR-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR48111">
        <property type="entry name" value="PTHR48111"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00072">
        <property type="entry name" value="Response_reg"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00486">
        <property type="entry name" value="Trans_reg_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00448">
        <property type="entry name" value="REC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00862">
        <property type="entry name" value="Trans_reg_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46894">
        <property type="entry name" value="SSF46894"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52172">
        <property type="entry name" value="SSF52172"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51755">
        <property type="entry name" value="OMPR_PHOB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50110">
        <property type="entry name" value="RESPONSE_REGULATORY"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1 3" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="2" id="KW-0597">Phosphoprotein</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Response regulatory" evidence="4">
        <location>
            <begin position="13"/>
            <end position="126"/>
        </location>
    </feature>
    <feature type="domain" description="OmpR/PhoB-type" evidence="5">
        <location>
            <begin position="137"/>
            <end position="239"/>
        </location>
    </feature>
    <feature type="DNA-binding region" description="OmpR/PhoB-type" evidence="3">
        <location>
            <begin position="137"/>
            <end position="239"/>
        </location>
    </feature>
    <feature type="modified residue" description="4-aspartylphosphate" evidence="2">
        <location>
            <position position="62"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00169"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU01091"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="PROSITE" id="PS50110"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="PROSITE" id="PS51755"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="ABX32769.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="241" mass="26739" checksum="1DA1225701DCE3D2" modified="2008-01-15" version="1">MNSTAQPTATTPLVLVVEDEPAIASILTAYLERDGLRSRMASDGQEALQLFRLLRPDLVLLDIHLPGMDGIDVLRAIRDDSQTPVIMVTALADDVDKLLALRLGADDYVVKPFNPPEVVARVRAVLRRTQARKNPAPAPIRVGPIEIDAEAHSAVVYDNEGRALPLPLTLTEFRLLACLAAQPRRCFSRSHLIEHCLPESDALERVIDSHLSKLRRKLQLAGQEGLIETVRGIGYRLWPWD</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-01-19" version="49" xmlns="http://uniprot.org/uniprot">
    <accession>A9BRA0</accession>
    <name>A9BRA0_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="3">LemA</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Daci_0512</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="4" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX33158.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_0512"/>
    <dbReference type="EnsemblBacteria" id="ABX33158">
        <property type="protein sequence ID" value="ABX33158"/>
        <property type="gene ID" value="Daci_0512"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_0512"/>
    <dbReference type="eggNOG" id="COG1704">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_056714_2_1_4"/>
    <dbReference type="OMA" id="LEHACSA"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.1440.20">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023353">
        <property type="entry name" value="LemA-like_dom_sf"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="2" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="20"/>
            <end position="40"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="142"/>
            <end position="163"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ABX33158.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="227" mass="24534" checksum="CC3F863722596AA4" modified="2008-01-15" version="1">MGITRVRPDQPPAGPLQTMWSLSLEWMLLALLVFWAVGAYNRLARLRSGCVQQFGVLDAHLGQWHAMLQAFEAQPKAEGQSPALVHAQAALHQTAAQLQAALVDARGRPLRETALASLEHACSALDVAWQAMTKVAVDTGAGAAGTGAAPSDAPSPDPDPLQPWQQRWTEHQVRNRLGLQQFNAAAERYNAAIAQYPARLLAWLLGFRPVRSLLVEPVASKAQESGT</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="85" xmlns="http://uniprot.org/uniprot">
    <accession>A9BRA1</accession>
    <name>A9BRA1_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="5">16S rRNA (cytosine(967)-C(5))-methyltransferase</fullName>
            <ecNumber evidence="5">2.1.1.176</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="10">16S rRNA m5C967 methyltransferase</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="11">rRNA (cytosine-C(5)-)-methyltransferase RsmB</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="15" type="ordered locus">Daci_0513</name>
    </gene>
    <organism evidence="15 16">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="15 16" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="16">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="16" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="16">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="2">Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>cytidine(967) in 16S rRNA + S-adenosyl-L-methionine = 5-methylcytidine(967) in 16S rRNA + H(+) + S-adenosyl-L-homocysteine</text>
            <dbReference type="Rhea" id="RHEA:42748"/>
            <dbReference type="Rhea" id="RHEA-COMP:10219"/>
            <dbReference type="Rhea" id="RHEA-COMP:10220"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:57856"/>
            <dbReference type="ChEBI" id="CHEBI:59789"/>
            <dbReference type="ChEBI" id="CHEBI:74483"/>
            <dbReference type="ChEBI" id="CHEBI:82748"/>
            <dbReference type="EC" id="2.1.1.176"/>
        </reaction>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="3">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="4 12">Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB/NOP family.</text>
    </comment>
    <dbReference type="EC" id="2.1.1.176" evidence="5"/>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX33159.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012202445.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_0513"/>
    <dbReference type="PRIDE" id="A9BRA1"/>
    <dbReference type="EnsemblBacteria" id="ABX33159">
        <property type="protein sequence ID" value="ABX33159"/>
        <property type="gene ID" value="Daci_0513"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_0513"/>
    <dbReference type="eggNOG" id="COG0144">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_005316_0_4_4"/>
    <dbReference type="OMA" id="IAYRTMR"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003723">
        <property type="term" value="F:RNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008649">
        <property type="term" value="F:rRNA methyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006355">
        <property type="term" value="P:regulation of transcription, DNA-templated"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.940.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.150">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018314">
        <property type="entry name" value="Fmu/NOL1/Nop2p_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001678">
        <property type="entry name" value="MeTrfase_RsmB/NOP2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035926">
        <property type="entry name" value="NusB-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006027">
        <property type="entry name" value="NusB_RsmB_TIM44"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023267">
        <property type="entry name" value="RCMT"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004573">
        <property type="entry name" value="rRNA_ssu_MeTfrase_B"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029063">
        <property type="entry name" value="SAM-dependent_MTases_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR22807">
        <property type="entry name" value="PTHR22807"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01189">
        <property type="entry name" value="Methyltr_RsmB-F"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01029">
        <property type="entry name" value="NusB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR02008">
        <property type="entry name" value="RCMTFAMILY"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48013">
        <property type="entry name" value="SSF48013"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53335">
        <property type="entry name" value="SSF53335"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00563">
        <property type="entry name" value="rsmB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01153">
        <property type="entry name" value="NOL1_NOP2_SUN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51686">
        <property type="entry name" value="SAM_MT_RSMB_NOP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="6 12" id="KW-0489">Methyltransferase</keyword>
    <keyword evidence="16" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="9 12" id="KW-0694">RNA-binding</keyword>
    <keyword evidence="8 12" id="KW-0949">S-adenosyl-L-methionine</keyword>
    <keyword evidence="7 12" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="SAM_MT_RSMB_NOP" evidence="14">
        <location>
            <begin position="180"/>
            <end position="461"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="13">
        <location>
            <begin position="1"/>
            <end position="20"/>
        </location>
    </feature>
    <feature type="region of interest" description="S-adenosyl-L-methionine binding" evidence="12">
        <location>
            <begin position="274"/>
            <end position="280"/>
        </location>
    </feature>
    <feature type="active site" description="Nucleophile" evidence="12">
        <location>
            <position position="401"/>
        </location>
    </feature>
    <feature type="binding site" evidence="12">
        <location>
            <position position="299"/>
        </location>
        <ligand>
            <name>S-adenosyl-L-methionine</name>
            <dbReference type="ChEBI" id="CHEBI:59789"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="12">
        <location>
            <position position="325"/>
        </location>
        <ligand>
            <name>S-adenosyl-L-methionine</name>
            <dbReference type="ChEBI" id="CHEBI:59789"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="12">
        <location>
            <position position="348"/>
        </location>
        <ligand>
            <name>S-adenosyl-L-methionine</name>
            <dbReference type="ChEBI" id="CHEBI:59789"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00000588"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00002724"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00004496"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00007494"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00012140"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022603"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00022691"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00022884"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00030399"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="ARBA" id="ARBA00031088"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="12">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU01023"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="13">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="14">
        <source>
            <dbReference type="PROSITE" id="PS51686"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="15">
        <source>
            <dbReference type="EMBL" id="ABX33159.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="16">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="462" mass="50523" checksum="56D75F2E8ED402CA" modified="2008-01-15" version="1">MNQRTHSSPRRAAAPSQAPAAPPLWQQLDAVAQCLQSVLEGQSSRSVLARVAQPLRPGVQALLFQVLRQLGRAQALQKQLASRNPPPRVSALLNTALALAWDESRAPYPPFTLVNQTVEAAKQGPTRAQSGFINACLRRFLRERDALVAATDDQPQAVWNHPAWWIARLRKDHPDHWQAILQANNEQPPMTLRVNRQQTDRQSYQAALQAMDVPSLAVADSGLQLQQALPVQSLPGFDEGLASVQDAAAQLAAPLLLQGLEQPAGRALRVLDACAAPGGKTAHLLEYAAPQTLEVTALEIDAERAARIADTLGRLRLQARVVVADASRPDQWFDAQCGGQRFDAILLDAPCTASGIVRRQPDVRWLRRESDVRQLAEIQARLLDTLWPLLQPGGRLLYCTCSVFREEGEAQVQAFVTRNSEARTLAAPGHLIPGKADKAGMLADNALGDHDGFFYALLQKTR</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="68" xmlns="http://uniprot.org/uniprot">
    <accession>A9BRB9</accession>
    <name>A9BRB9_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized peroxidase-related enzyme</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_0531</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX33177.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_0531"/>
    <dbReference type="PRIDE" id="A9BRB9"/>
    <dbReference type="EnsemblBacteria" id="ABX33177">
        <property type="protein sequence ID" value="ABX33177"/>
        <property type="gene ID" value="Daci_0531"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_0531"/>
    <dbReference type="eggNOG" id="COG2128">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="eggNOG" id="COG4950">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_057689_0_0_4"/>
    <dbReference type="OMA" id="NHWYHET"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004601">
        <property type="term" value="F:peroxidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051920">
        <property type="term" value="F:peroxiredoxin activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.1290.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029032">
        <property type="entry name" value="AhpD-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004675">
        <property type="entry name" value="AhpD_core"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003779">
        <property type="entry name" value="CMD-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010195">
        <property type="entry name" value="Uncharacterised_peroxidase-rel"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02627">
        <property type="entry name" value="CMD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF69118">
        <property type="entry name" value="SSF69118"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00778">
        <property type="entry name" value="ahpD_dom"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01926">
        <property type="entry name" value="peroxid_rel"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="2" id="KW-0575">Peroxidase</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="CMD" evidence="1">
        <location>
            <begin position="256"/>
            <end position="309"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF02627"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX33177.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="386" mass="41384" checksum="BC2C9FA0CFAA6022" modified="2008-01-15" version="1">MTTANDTIDRLAGLTDQSPVFATRRQRDKVAIATQACEDLLLGDGLADSLSRAERLVLASEQCRVSGVQALADEYRQRAESLGDALTPALRTVLAQPGAQTGNARLDAALHFVRTLALHPAESDRAALLAMPESGLSIDDTVLVAQLVGFIAYQLRLFAGVQAMDALGGQASAPAAEAAAAPFVHPANLPPPGEPLRRNGYTSETLDWTSWLPVLDPATATAEQQAVLDLSHPKARTSDFYLLLARQPRVLSERSQAFNAIMYAPGGLSRAEREVAATAVSRSNGCVYCASVHAQRFEQLAKRNDVMAQMFDDPDTAGTNARERAIIQSSLALTRAPGSFGAAQLQPLRDAGLTDQEILDMLHSAALFGWANRLMLNLGKERYITP</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="61" xmlns="http://uniprot.org/uniprot">
    <accession>A9BRF7</accession>
    <name>A9BRF7_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">Lipopolysaccharide export system protein LptA</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="primary">lptA</name>
        <name evidence="6" type="ordered locus">Daci_0672</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="7" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="3">Involved in the assembly of lipopolysaccharide (LPS). Required for the translocation of LPS from the inner membrane to the outer membrane.</text>
    </comment>
    <comment type="subunit">
        <text evidence="3">Component of the lipopolysaccharide transport and assembly complex.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="3">Periplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="3">Belongs to the LptA family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX33318.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_0672"/>
    <dbReference type="PRIDE" id="A9BRF7"/>
    <dbReference type="EnsemblBacteria" id="ABX33318">
        <property type="protein sequence ID" value="ABX33318"/>
        <property type="gene ID" value="Daci_0672"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_0672"/>
    <dbReference type="eggNOG" id="COG1934">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_095993_1_0_4"/>
    <dbReference type="OMA" id="VPTQQME"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0042597">
        <property type="term" value="C:periplasmic space"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0001530">
        <property type="term" value="F:lipopolysaccharide binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043165">
        <property type="term" value="P:Gram-negative-bacterium-type cell outer membrane assembly"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015920">
        <property type="term" value="P:lipopolysaccharide transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01914">
        <property type="entry name" value="LPS_assembly_LptA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014340">
        <property type="entry name" value="LptA"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005653">
        <property type="entry name" value="OstA-like_N"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03968">
        <property type="entry name" value="LptD_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR03002">
        <property type="entry name" value="outer_YhbN_LptA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2 3" id="KW-0574">Periplasm</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0732">Signal</keyword>
    <keyword evidence="1 3" id="KW-0813">Transport</keyword>
    <feature type="signal peptide" evidence="3">
        <location>
            <begin position="1"/>
            <end position="31"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5009007253" description="Lipopolysaccharide export system protein LptA" evidence="3">
        <location>
            <begin position="32"/>
            <end position="228"/>
        </location>
    </feature>
    <feature type="domain" description="OstA-like_N" evidence="5">
        <location>
            <begin position="41"/>
            <end position="161"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="4">
        <location>
            <begin position="169"/>
            <end position="228"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="4">
        <location>
            <begin position="169"/>
            <end position="183"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="4">
        <location>
            <begin position="206"/>
            <end position="228"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022448"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022764"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01914"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="Pfam" id="PF03968"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="ABX33318.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="228" mass="24255" checksum="B32DBD6A4EC7D52E" modified="2008-01-15" version="1" precursor="true">MDARSVPSMKQRLSSLLLAAALAAFAGMAQAEKADSTKPMNIEADALRHDELKQTSVFTGNVVMTKGTIVLRGAQLDVRQDPEGFQYGVVTAEAGKRAFFRQKRDTVPGQPEEFVEGEGEVIEYDGKADLVKFIRRGELRRYRGGQLSDEITGSIIVYNNLTDVFTVDGQKTSGGQPSSTAGQGGRVRAVLAPKEGTPGSQPRAPAAGTPGTSLQPSNSLDSLGGTKR</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="32" xmlns="http://uniprot.org/uniprot">
    <accession>A9BRI6</accession>
    <name>A9BRI6_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Daci_0701</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="2" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX33347.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012202633.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_0701"/>
    <dbReference type="PRIDE" id="A9BRI6"/>
    <dbReference type="EnsemblBacteria" id="ABX33347">
        <property type="protein sequence ID" value="ABX33347"/>
        <property type="gene ID" value="Daci_0701"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_0701"/>
    <dbReference type="HOGENOM" id="CLU_1892792_0_0_4"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ABX33347.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="134" mass="15098" checksum="8BA0BFCB4ACA3866" modified="2008-01-15" version="1">MMEISTLEMQRTRRRNLVPSEGGIAAIVRQTCHLSEQDWPHDRLLAHTRRGLDRAVGWGLSTPDDVIGFLALRHQFGERFDEFPAVRKFLARTDLPPDGRIQLMMLELPMGIWDVVRRRTPAGESSSPLGGPGA</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="57" xmlns="http://uniprot.org/uniprot">
    <accession>A9BRQ0</accession>
    <name>A9BRQ0_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Alanine racemase domain protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Daci_0971</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="4" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the DSD1 family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX33617.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012202903.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_0971"/>
    <dbReference type="PRIDE" id="A9BRQ0"/>
    <dbReference type="EnsemblBacteria" id="ABX33617">
        <property type="protein sequence ID" value="ABX33617"/>
        <property type="gene ID" value="Daci_0971"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_0971"/>
    <dbReference type="eggNOG" id="COG3616">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_031639_2_2_4"/>
    <dbReference type="OMA" id="WPRFYGW"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016829">
        <property type="term" value="F:lyase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.37.20">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.20.20.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001608">
        <property type="entry name" value="Ala_racemase_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR026956">
        <property type="entry name" value="D-ser_dehydrat-like_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR042208">
        <property type="entry name" value="D-ser_dehydrat-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029066">
        <property type="entry name" value="PLP-binding_barrel"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01168">
        <property type="entry name" value="Ala_racemase_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF14031">
        <property type="entry name" value="D-ser_dehydrat"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM01119">
        <property type="entry name" value="D-ser_dehydrat"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51419">
        <property type="entry name" value="SSF51419"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="D-ser_dehydrat" evidence="2">
        <location>
            <begin position="257"/>
            <end position="366"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00005323"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="SMART" id="SM01119"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ABX33617.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="380" mass="40290" checksum="9D1D6F760E3367DB" modified="2008-01-15" version="1">MQDTLLTLDTPAAVIDLDRMQRNIARMQQRMDAQGVRLRPHVKTSKSVPVAAAQRAAGASGITVSTLKEAEQFFAAGTTDILYAVSMAPHRLPQALQLRRRGCDLKLIVDSVAAAQAIAAFGGEQGEAFEVWIEIDTDGHRSGVGADDTPLLLAIGRTLHDGGMRLGGVLTHAGSSYELDTPEALQALAERERAGCVQAAEALRAAGLPCPVVSVGSTPTALAASRLDGVTEVRAGVYVFFDLVMRNIGVCTAEDVALSVLATVIGHQADKGWAIVDAGWMAMSRDRGTARQKQDFGYGQVCDLQGRVMPGFVLTGANQEHGILARADGTAEADIATRFPLGTRLRILPNHACATGAQFPAYQALAADGSVQTWERLHGW</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="80" xmlns="http://uniprot.org/uniprot">
    <accession>A9BRS5</accession>
    <name>A9BRS5_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Transcriptional regulator, LysR family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Daci_0996</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="4" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the LysR transcriptional regulatory family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX33642.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012202928.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_0996"/>
    <dbReference type="PRIDE" id="A9BRS5"/>
    <dbReference type="EnsemblBacteria" id="ABX33642">
        <property type="protein sequence ID" value="ABX33642"/>
        <property type="gene ID" value="Daci_0996"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_0996"/>
    <dbReference type="eggNOG" id="COG0583">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_039613_6_1_4"/>
    <dbReference type="OMA" id="GATACIH"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003700">
        <property type="term" value="F:DNA-binding transcription factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005119">
        <property type="entry name" value="LysR_subst-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000847">
        <property type="entry name" value="Tscrpt_reg_HTH_LysR"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036390">
        <property type="entry name" value="WH_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00126">
        <property type="entry name" value="HTH_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03466">
        <property type="entry name" value="LysR_substrate"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46785">
        <property type="entry name" value="SSF46785"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50931">
        <property type="entry name" value="HTH_LYSR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HTH lysR-type" evidence="2">
        <location>
            <begin position="4"/>
            <end position="61"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00009437"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS50931"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ABX33642.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="298" mass="32241" checksum="1CD8A3783F2B63CF" modified="2008-01-15" version="1">MRRLNLDQLQTLVAVADLGTLAAAAQALHLSPPAVSLHIQELEARLDTPLLVRGKRQAQLTPAGALLAEGGRRLLADSESLLRQVRKRAEGFGASVRIGASAGVSPLLLPELLQWLAEHAPGVELRLEVVSSAQAMQRLATGHLDLALVGLPQPVPSGLEMRAWRDDPMELFATPQMPLPDQITPEWLNAQPWIGFAAGTQMHRLLSQWFAQAGLLPQPRMEMSFPEGIRALVAAGHGPTVLPREEPMDAVSRTLQQRGLTPALKRPLGLACRSAAQQDPAVQAVVRGLMRFADPVRQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="30" xmlns="http://uniprot.org/uniprot">
    <accession>A9BRY6</accession>
    <name>A9BRY6_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Daci_0750</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="2" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX33396.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012202682.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_0750"/>
    <dbReference type="PRIDE" id="A9BRY6"/>
    <dbReference type="EnsemblBacteria" id="ABX33396">
        <property type="protein sequence ID" value="ABX33396"/>
        <property type="gene ID" value="Daci_0750"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_0750"/>
    <dbReference type="HOGENOM" id="CLU_1746645_0_0_4"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ABX33396.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="149" mass="16608" checksum="09A394791B600AA9" modified="2008-01-15" version="1">MSRYLLGPRCLLWMANQEPATLEWFSTIRPLDCIVSDLSMAIAKAAVAEAFHDLRDRNEWFSLLDALYANLRAEGASMLTSVDNKVLERFIEWRNFAPLDSQGPRGTAPLAQDLRLLIATADLLKVCYTEPANLYLTQAAARGVAVHAL</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="86" xmlns="http://uniprot.org/uniprot">
    <accession>A9BSB0</accession>
    <name>A9BSB0_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="7">Flavohemoprotein</fullName>
            <ecNumber evidence="6">1.14.12.17</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="18">Flavohemoglobin</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="17">Hemoglobin-like protein</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="19">Nitric oxide dioxygenase</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="24" type="ordered locus">Daci_1079</name>
    </gene>
    <organism evidence="24 25">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="24 25" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="25">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="25" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="25">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="16">Is involved in NO detoxification in an aerobic process, termed nitric oxide dioxygenase (NOD) reaction that utilizes O(2) and NAD(P)H to convert NO to nitrate, which protects the bacterium from various noxious nitrogen compounds. Therefore, plays a central role in the inducible response to nitrosative stress.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>NADH + 2 nitric oxide + 2 O2 = H(+) + NAD(+) + 2 nitrate</text>
            <dbReference type="Rhea" id="RHEA:19469"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:15379"/>
            <dbReference type="ChEBI" id="CHEBI:16480"/>
            <dbReference type="ChEBI" id="CHEBI:17632"/>
            <dbReference type="ChEBI" id="CHEBI:57540"/>
            <dbReference type="ChEBI" id="CHEBI:57945"/>
            <dbReference type="EC" id="1.14.12.17"/>
        </reaction>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="2">
            <text>NADPH + 2 nitric oxide + 2 O2 = H(+) + NADP(+) + 2 nitrate</text>
            <dbReference type="Rhea" id="RHEA:19465"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:15379"/>
            <dbReference type="ChEBI" id="CHEBI:16480"/>
            <dbReference type="ChEBI" id="CHEBI:17632"/>
            <dbReference type="ChEBI" id="CHEBI:57783"/>
            <dbReference type="ChEBI" id="CHEBI:58349"/>
            <dbReference type="EC" id="1.14.12.17"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="3">
            <name>heme b</name>
            <dbReference type="ChEBI" id="CHEBI:60344"/>
        </cofactor>
    </comment>
    <comment type="similarity">
        <text evidence="5">Belongs to the globin family. Two-domain flavohemoproteins subfamily.</text>
    </comment>
    <comment type="similarity">
        <text evidence="4">In the C-terminal section; belongs to the flavoprotein pyridine nucleotide cytochrome reductase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="20">Lacks conserved residue(s) required for the propagation of feature annotation.</text>
    </comment>
    <dbReference type="EC" id="1.14.12.17" evidence="6"/>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX33724.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012203010.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_1079"/>
    <dbReference type="PRIDE" id="A9BSB0"/>
    <dbReference type="EnsemblBacteria" id="ABX33724">
        <property type="protein sequence ID" value="ABX33724"/>
        <property type="gene ID" value="Daci_1079"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_1079"/>
    <dbReference type="eggNOG" id="COG1017">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="eggNOG" id="COG1018">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_003827_12_0_4"/>
    <dbReference type="OMA" id="ADIHYEV"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0071949">
        <property type="term" value="F:FAD binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0020037">
        <property type="term" value="F:heme binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008941">
        <property type="term" value="F:nitric oxide dioxygenase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0019825">
        <property type="term" value="F:oxygen binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005344">
        <property type="term" value="F:oxygen carrier activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051409">
        <property type="term" value="P:response to nitrosative stress"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009636">
        <property type="term" value="P:response to toxic substance"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.490.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.80">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008333">
        <property type="entry name" value="Cbr1-like_FAD-bd_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017927">
        <property type="entry name" value="FAD-bd_FR_type"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR039261">
        <property type="entry name" value="FNR_nucleotide-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000971">
        <property type="entry name" value="Globin"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009050">
        <property type="entry name" value="Globin-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012292">
        <property type="entry name" value="Globin/Proto"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023950">
        <property type="entry name" value="Hmp"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001433">
        <property type="entry name" value="OxRdtase_FAD/NAD-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000951">
        <property type="entry name" value="Ph_dOase_redase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017938">
        <property type="entry name" value="Riboflavin_synthase-like_b-brl"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43396:SF3">
        <property type="entry name" value="PTHR43396:SF3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00970">
        <property type="entry name" value="FAD_binding_6"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00042">
        <property type="entry name" value="Globin"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00175">
        <property type="entry name" value="NAD_binding_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00409">
        <property type="entry name" value="PHDIOXRDTASE"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46458">
        <property type="entry name" value="SSF46458"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52343">
        <property type="entry name" value="SSF52343"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF63380">
        <property type="entry name" value="SSF63380"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51384">
        <property type="entry name" value="FAD_FR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01033">
        <property type="entry name" value="GLOBIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="8" id="KW-0216">Detoxification</keyword>
    <keyword evidence="12" id="KW-0274">FAD</keyword>
    <keyword evidence="10" id="KW-0285">Flavoprotein</keyword>
    <keyword evidence="9 21" id="KW-0349">Heme</keyword>
    <keyword evidence="14" id="KW-0408">Iron</keyword>
    <keyword evidence="11" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="15" id="KW-0520">NAD</keyword>
    <keyword evidence="13" id="KW-0521">NADP</keyword>
    <keyword evidence="21" id="KW-0561">Oxygen transport</keyword>
    <keyword evidence="25" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="21" id="KW-0813">Transport</keyword>
    <feature type="domain" description="GLOBIN" evidence="22">
        <location>
            <begin position="26"/>
            <end position="152"/>
        </location>
    </feature>
    <feature type="domain" description="FAD-binding FR-type" evidence="23">
        <location>
            <begin position="170"/>
            <end position="273"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00000126"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00001762"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00001970"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00006401"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00008414"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00012229"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00014637"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00022575"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00022617"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00022630"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="12">
        <source>
            <dbReference type="ARBA" id="ARBA00022827"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="13">
        <source>
            <dbReference type="ARBA" id="ARBA00022857"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="14">
        <source>
            <dbReference type="ARBA" id="ARBA00023004"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="15">
        <source>
            <dbReference type="ARBA" id="ARBA00023027"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="16">
        <source>
            <dbReference type="ARBA" id="ARBA00025094"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="17">
        <source>
            <dbReference type="ARBA" id="ARBA00030024"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="18">
        <source>
            <dbReference type="ARBA" id="ARBA00030929"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="19">
        <source>
            <dbReference type="ARBA" id="ARBA00033187"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="20">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00238"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="21">
        <source>
            <dbReference type="RuleBase" id="RU000356"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="22">
        <source>
            <dbReference type="PROSITE" id="PS01033"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="23">
        <source>
            <dbReference type="PROSITE" id="PS51384"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="24">
        <source>
            <dbReference type="EMBL" id="ABX33724.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="25">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="408" mass="44699" checksum="5C25FD5A010D1554" modified="2008-01-15" version="1">MPGIAPGMPVPVPKEFPVLTDRQRAIVQSTVPLLETGGEALITHFYQTMLGEYPEVRALFSMAHQQSGAQPRALAYSVLMYAKHIDRLEALGDLPAQIINKHVALQVQPEHYPIVGTCLLRAIREVLGAEIATDEVIDAWGAAYQQLADILIGAERQAYDRTAAAEGGWRGERAFVVEDKVAESAEITSFYLVPADGGPVIAHQPGQYIGLRLVVDGQEQRRNYSLSAPADGRSLRISVKREAGGKVSNFLHDRVRVGDTLQLFPPAGHFTLQPGERPLVLISGGVGITPTLPMLDAALPSKRPVVFIHCARERGVHAFRERVDALAAVHPQLSRYYCYDRVDEGDEADAQGLLTARQLGEWLPSVDADVYFLGPRPFMRSVKESLRVLGVPEGQVRYEFFGPAEALA</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-05-25" version="56" xmlns="http://uniprot.org/uniprot">
    <accession>A9BSC5</accession>
    <name>A9BSC5_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Thioesterase superfamily protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_1094</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX33739.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
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        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_1094"/>
    <dbReference type="EnsemblBacteria" id="ABX33739">
        <property type="protein sequence ID" value="ABX33739"/>
        <property type="gene ID" value="Daci_1094"/>
    </dbReference>
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    <dbReference type="KEGG" id="dac:Daci_1094"/>
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    </dbReference>
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        <property type="entry name" value="HotDog_dom_sf"/>
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        <property type="entry name" value="PAAI_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006683">
        <property type="entry name" value="Thioestr_dom"/>
    </dbReference>
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        <property type="entry name" value="4HBT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54637">
        <property type="entry name" value="SSF54637"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00369">
        <property type="entry name" value="unchar_dom_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="4HBT" evidence="1">
        <location>
            <begin position="59"/>
            <end position="133"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF03061"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX33739.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="145" mass="14980" checksum="D4C1FA8B182C9B7C" modified="2008-01-15" version="1">MNAVGISTAPDLEAAALARGYFGIDVPFMSHIGLEPVSLAPGLARTRLPMRPHLANSRGHGHGGALMSALDFTLSAAARSSNPLGLGVVTIEMSTHFLASATTDLLIEARVLRAGARTVFCEGNVLDSAGQAVCTARAVFKLIAL</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="55" xmlns="http://uniprot.org/uniprot">
    <accession>A9BSG7</accession>
    <name>A9BSG7_DELAS</name>
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        <submittedName>
            <fullName evidence="3">NMT1/THI5 like domain protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Daci_1136</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="4" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX33781.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_1136"/>
    <dbReference type="PRIDE" id="A9BSG7"/>
    <dbReference type="EnsemblBacteria" id="ABX33781">
        <property type="protein sequence ID" value="ABX33781"/>
        <property type="gene ID" value="Daci_1136"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_1136"/>
    <dbReference type="eggNOG" id="COG0715">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_028871_1_1_4"/>
    <dbReference type="OMA" id="TYFHDSA"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009228">
        <property type="term" value="P:thiamine biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027939">
        <property type="entry name" value="NMT1/THI5"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015168">
        <property type="entry name" value="SsuA/THI5"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006311">
        <property type="entry name" value="TAT_signal"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR31528">
        <property type="entry name" value="PTHR31528"/>
        <property type="match status" value="1"/>
    </dbReference>
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        <property type="entry name" value="NMT1"/>
        <property type="match status" value="1"/>
    </dbReference>
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        <property type="entry name" value="TAT"/>
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    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
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        <location>
            <begin position="1"/>
            <end position="33"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5002735755" evidence="1">
        <location>
            <begin position="34"/>
            <end position="351"/>
        </location>
    </feature>
    <feature type="domain" description="NMT1" evidence="2">
        <location>
            <begin position="52"/>
            <end position="266"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF09084"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ABX33781.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="351" mass="37641" checksum="62B94CCA5BC785F7" modified="2008-01-15" version="1">MLIATESSTMQRRHFLAAAALPAASAVMPGAFAQGKALTPLKFTLDFRVTSQTAPFFVALQKGYYRDEGLDVSIDVGSGSVASITRVASGAYQLGLGDISSLIEFQAQNAGAARVQAVYQYYNRAPFAIIGRKDRGITGEFASLKGKKVAAAAVESTRRVWPLVAQRQNLPADLFAWTTTEFSARDNVVVRGDVDAATYFHDSAVSLFARIKPEELSVLRYTDAGVQLYGNAILASSALVAEQPALVAGFLRASNRALIECLAQPALAVAAVRQREPILDEKLELARWAITSQYLAAPDTQRHGLGDIDPQLLARQAEQVSQAFGLKAPVSADALFNRSLLPPLAARMAKA</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="62" xmlns="http://uniprot.org/uniprot">
    <accession>A9BSY5</accession>
    <name>A9BSY5_DELAS</name>
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        <recommendedName>
            <fullName evidence="1">Integrase catalytic domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_1702</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
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                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX34345.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012203630.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_1702"/>
    <dbReference type="PRIDE" id="A9BSY5"/>
    <dbReference type="EnsemblBacteria" id="ABX34345">
        <property type="protein sequence ID" value="ABX34345"/>
        <property type="gene ID" value="Daci_1702"/>
    </dbReference>
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    <dbReference type="eggNOG" id="COG2801">
        <property type="taxonomic scope" value="Bacteria"/>
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    <dbReference type="OMA" id="VIDHYSR"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003676">
        <property type="term" value="F:nucleic acid binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015074">
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        <property type="project" value="InterPro"/>
    </dbReference>
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        <property type="match status" value="1"/>
    </dbReference>
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        <property type="entry name" value="Integrase_cat-core"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012337">
        <property type="entry name" value="RNaseH-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036397">
        <property type="entry name" value="RNaseH_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00665">
        <property type="entry name" value="rve"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53098">
        <property type="entry name" value="SSF53098"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50994">
        <property type="entry name" value="INTEGRASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Integrase catalytic" evidence="1">
        <location>
            <begin position="254"/>
            <end position="448"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS50994"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX34345.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="650" mass="74199" checksum="20CB714DF041754D" modified="2008-01-15" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="77" xmlns="http://uniprot.org/uniprot">
    <accession>A9BT63</accession>
    <name>A9BT63_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Transcriptional regulator, LysR family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Daci_1988</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="4" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the LysR transcriptional regulatory family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX34628.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_1988"/>
    <dbReference type="PRIDE" id="A9BT63"/>
    <dbReference type="EnsemblBacteria" id="ABX34628">
        <property type="protein sequence ID" value="ABX34628"/>
        <property type="gene ID" value="Daci_1988"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_1988"/>
    <dbReference type="eggNOG" id="COG0583">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_039613_2_0_4"/>
    <dbReference type="OMA" id="TWVAMHE"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003700">
        <property type="term" value="F:DNA-binding transcription factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005119">
        <property type="entry name" value="LysR_subst-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000847">
        <property type="entry name" value="Tscrpt_reg_HTH_LysR"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036390">
        <property type="entry name" value="WH_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00126">
        <property type="entry name" value="HTH_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03466">
        <property type="entry name" value="LysR_substrate"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00039">
        <property type="entry name" value="HTHLYSR"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46785">
        <property type="entry name" value="SSF46785"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50931">
        <property type="entry name" value="HTH_LYSR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HTH lysR-type" evidence="2">
        <location>
            <begin position="15"/>
            <end position="66"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00009437"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS50931"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ABX34628.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="302" mass="32520" checksum="F29220EAADD83A46" modified="2008-01-15" version="1">MNGSVMSEPHWEWYRSFLQVLESGSLSAAGRAMGLAQPTVGRHIDGLESALGLQLFTRSSDGFAPTEAAYELQPYAASMAATAAALRRVAASHGAGVRGTVRLTASEVVGVELLPPVLAQLRAAHPELRIELVLSNAVDDLLRREADVAVRMFRPQQEALVARHIGAIELGLHAHESYLARHGVPASLQELAGHSLIGFDHENAFIRRFQQQFPMFTREAMALSSDSDLAQLGAIRAGFGIGICQSALAARDAGLVRVLPQAFSWKLDTWVAMHEDLRKSERCAVVFKAVAQALTAYASSGS</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="52" xmlns="http://uniprot.org/uniprot">
    <accession>A9BTD8</accession>
    <name>A9BTD8_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Membrane protein-like protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ordered locus">Daci_2063</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="5" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX34703.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012203986.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_2063"/>
    <dbReference type="PRIDE" id="A9BTD8"/>
    <dbReference type="EnsemblBacteria" id="ABX34703">
        <property type="protein sequence ID" value="ABX34703"/>
        <property type="gene ID" value="Daci_2063"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_2063"/>
    <dbReference type="eggNOG" id="COG4655">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_024674_0_0_4"/>
    <dbReference type="OMA" id="DSITANW"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018705">
        <property type="entry name" value="DUF2134_membrane"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012495">
        <property type="entry name" value="TadE"/>
    </dbReference>
    <dbReference type="Pfam" id="PF09977">
        <property type="entry name" value="Tad_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07811">
        <property type="entry name" value="TadE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0472">Membrane</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="2" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="33"/>
            <end position="58"/>
        </location>
    </feature>
    <feature type="domain" description="Tad_C" evidence="3">
        <location>
            <begin position="74"/>
            <end position="169"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="25"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF09977"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="ABX34703.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="762" mass="80150" checksum="E6605536078661A6" modified="2008-01-15" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="65" xmlns="http://uniprot.org/uniprot">
    <accession>A9BTP6</accession>
    <name>A9BTP6_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Integrase catalytic region</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Daci_2672</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="4" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX35310.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_003056089.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_2672"/>
    <dbReference type="PRIDE" id="A9BTP6"/>
    <dbReference type="EnsemblBacteria" id="ABX35310">
        <property type="protein sequence ID" value="ABX35310"/>
        <property type="gene ID" value="Daci_2672"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_2672"/>
    <dbReference type="eggNOG" id="COG2801">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="eggNOG" id="COG2963">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_027402_27_5_4"/>
    <dbReference type="OMA" id="VISWSIG"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003676">
        <property type="term" value="F:nucleic acid binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015074">
        <property type="term" value="P:DNA integration"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.420.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009057">
        <property type="entry name" value="Homeobox-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025948">
        <property type="entry name" value="HTH-like_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001584">
        <property type="entry name" value="Integrase_cat-core"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012337">
        <property type="entry name" value="RNaseH-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036397">
        <property type="entry name" value="RNaseH_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13276">
        <property type="entry name" value="HTH_21"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00665">
        <property type="entry name" value="rve"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13333">
        <property type="entry name" value="rve_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46689">
        <property type="entry name" value="SSF46689"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53098">
        <property type="entry name" value="SSF53098"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50994">
        <property type="entry name" value="INTEGRASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Integrase catalytic" evidence="2">
        <location>
            <begin position="344"/>
            <end position="509"/>
        </location>
    </feature>
    <feature type="coiled-coil region" evidence="1">
        <location>
            <begin position="179"/>
            <end position="206"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS50994"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ABX35310.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="512" mass="58294" checksum="8A4EF0CF2E7EE84A" modified="2008-01-15" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="64" xmlns="http://uniprot.org/uniprot">
    <accession>A9BTP9</accession>
    <name>A9BTP9_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Phosphonate ABC transporter, periplasmic phosphonate-binding protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ordered locus">Daci_2675</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="6" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the phosphate/phosphite/phosphonate binding protein family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX35313.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_003056094.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_2675"/>
    <dbReference type="PRIDE" id="A9BTP9"/>
    <dbReference type="EnsemblBacteria" id="ABX35313">
        <property type="protein sequence ID" value="ABX35313"/>
        <property type="gene ID" value="Daci_2675"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_2675"/>
    <dbReference type="eggNOG" id="COG3221">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_051472_6_2_4"/>
    <dbReference type="OMA" id="YIYPSLW"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043190">
        <property type="term" value="C:ATP-binding cassette (ABC) transporter complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0055085">
        <property type="term" value="P:transmembrane transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005770">
        <property type="entry name" value="PhnD"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001638">
        <property type="entry name" value="Solute-binding_3/MltF_N"/>
    </dbReference>
    <dbReference type="SMART" id="SM00062">
        <property type="entry name" value="PBPb"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01098">
        <property type="entry name" value="3A0109s03R"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 3" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="3">
        <location>
            <begin position="1"/>
            <end position="26"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5002735795" evidence="3">
        <location>
            <begin position="27"/>
            <end position="292"/>
        </location>
    </feature>
    <feature type="domain" description="PBPb" evidence="4">
        <location>
            <begin position="33"/>
            <end position="270"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00007162"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022729"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="SMART" id="SM00062"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="ABX35313.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="292" mass="31673" checksum="0115C4F2B086C1A1" modified="2008-01-15" version="1">MLNRRNFSLVVSAASFAALLPLWAHAQGKDPSKLRVALLPDENAASIIQNAQPLKRYLEQQLKKDVEIVVTTDYSSMIEAMRFGRIEVAYFGPFSYVLAKSKASGIEPFAVGVERGSPTYQSVLIATAGGPVKTLEDVRGKPFGFGDQASTSSHLAPRAHLLKKYKLDGEKDYRPVHLGAHDAVARAVQSGQIPAGALSKPILDNLIARGSIDATKIVQLDLSAPIPNYPVVMQGDLKPELKAAIRSAFLDMKDAEVLKAFRVQAFAATDDAAYDVLRDTATILKLDLGRMQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="52" xmlns="http://uniprot.org/uniprot">
    <accession>A9BTV1</accession>
    <name>A9BTV1_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">DUF2285 domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Daci_2727</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="4" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX35365.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012204586.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_2727"/>
    <dbReference type="PRIDE" id="A9BTV1"/>
    <dbReference type="EnsemblBacteria" id="ABX35365">
        <property type="protein sequence ID" value="ABX35365"/>
        <property type="gene ID" value="Daci_2727"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_2727"/>
    <dbReference type="eggNOG" id="COG5419">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_1080626_0_0_4"/>
    <dbReference type="OMA" id="HPAWFPD"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018754">
        <property type="entry name" value="DUF2285"/>
    </dbReference>
    <dbReference type="Pfam" id="PF10074">
        <property type="entry name" value="DUF2285"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="15"/>
            <end position="32"/>
        </location>
    </feature>
    <feature type="domain" description="DUF2285" evidence="2">
        <location>
            <begin position="130"/>
            <end position="236"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF10074"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ABX35365.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="254" mass="28013" checksum="9866544201CD0CEF" modified="2008-01-15" version="1">MAEPHHLAHWYPTAAYLYVLCLDTLALAWEYLRRHPDYRIDWLRRARCPDAAHRWGLRLLEDPDVDARDAHPAWLPGHGAVVQLHPDADPPPDATAFAFWRIPGHKQLLHDGKGLALIARSPSLCQRYALAPGLEDGMAVAHAYRGRHAAPAAPMPGTPASMARPRPPPAALLELHTLQALDATLAGASLRDVAEGLFGADAAAGWYSDGGLRSKVRRLVRRGDALMRGGYRRLAQLPPLEKGRFEESAKRPFN</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="59" xmlns="http://uniprot.org/uniprot">
    <accession>A9BTX7</accession>
    <name>A9BTX7_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Efflux transporter, RND family, MFP subunit</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ordered locus">Daci_2753</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="5" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX35391.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012204601.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_2753"/>
    <dbReference type="PRIDE" id="A9BTX7"/>
    <dbReference type="EnsemblBacteria" id="ABX35391">
        <property type="protein sequence ID" value="ABX35391"/>
        <property type="gene ID" value="Daci_2753"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_2753"/>
    <dbReference type="eggNOG" id="COG0845">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_018816_13_3_4"/>
    <dbReference type="OMA" id="MIDVPPE"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0022857">
        <property type="term" value="F:transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR032317">
        <property type="entry name" value="HlyD_D23"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006143">
        <property type="entry name" value="RND_pump_MFP"/>
    </dbReference>
    <dbReference type="Pfam" id="PF16576">
        <property type="entry name" value="HlyD_D23"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01730">
        <property type="entry name" value="RND_mfp"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2" id="KW-0472">Membrane</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="2" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="22"/>
            <end position="43"/>
        </location>
    </feature>
    <feature type="domain" description="HlyD_D23" evidence="3">
        <location>
            <begin position="92"/>
            <end position="329"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00009477"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF16576"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="ABX35391.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="416" mass="44260" checksum="88B6D160D8E6B777" modified="2008-01-15" version="1">MAAEQQSPPASASASAPSRARALLWLAVAAACTAAAIGIWTLGPHHASAETEDPPPSVAGKVQADVVRVAPDQAAALDVGPSQERPFENLRSTIGIIDFNQDHTTRVYSAQQGRIVKVLVKAGDDVKAGQTLYTVAVPEMAQAASALISSAATLRSANETLHRAEALAQENSIPQKELQQAQTDQQTAQAAHDAARQGLRLFELSDAEIARMERERQVGKEVAVKSPMDGRVTARSAQPGLLVQPGSDPAPVTVSDLRTLWMVASVPESQFSAYRTGQAVQVRVQAWPGKVFEGKVSYVGDSVDADSRRLVVRAEVADPRHELRPQMTADFSITVAAPQTSVAVPAEAVVREGSGADVVWVASDSDEKGPRFERRKVVRGQTADGLVQITDGLAGTERIARRNALFLSGLYETDAQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="35" xmlns="http://uniprot.org/uniprot">
    <accession>A9BU25</accession>
    <name>A9BU25_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Daci_3102</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="2" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX35740.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012204941.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="PRIDE" id="A9BU25"/>
    <dbReference type="EnsemblBacteria" id="ABX35740">
        <property type="protein sequence ID" value="ABX35740"/>
        <property type="gene ID" value="Daci_3102"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_3102"/>
    <dbReference type="HOGENOM" id="CLU_825682_0_0_4"/>
    <dbReference type="OMA" id="TITSECW"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ABX35740.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="336" mass="35399" checksum="90899669D9133EEB" modified="2008-01-15" version="1">MNVIHQFLGGLADLVPPPPRGPSVSSGPKTGMVFKRSASISAPLVRGQMLMPVTAWNWPDPVTGTMADAQFLFADTVPQSAANGALYQASGRSFSQGYKTFLQVLEACKFPYQSMLAGALQKMAAPPGDPAYSPTPVGWTKVYETGYLQWKPIWTLPKSSSEWSAAVAVGTIANPGTLRLNLNDTSGAGPQAPASLQALDASGRVLALPAASLETVTITSECWDQVPIYPGSWYDASMVALGRGLVPDAGVFFGPAGLMACRVSTFYVALKPRFDFTAAAPIPASLRQTLDEADTVQAMGVTVQRARGDGQPNQALRLVNTEPAPVIVAVSLETLA</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="80" xmlns="http://uniprot.org/uniprot">
    <accession>A9BUB0</accession>
    <name>A9BUB0_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Pseudouridine synthase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Daci_1168</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="4" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX33813.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_1168"/>
    <dbReference type="PRIDE" id="A9BUB0"/>
    <dbReference type="EnsemblBacteria" id="ABX33813">
        <property type="protein sequence ID" value="ABX33813"/>
        <property type="gene ID" value="Daci_1168"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_1168"/>
    <dbReference type="eggNOG" id="COG1187">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_024979_10_1_4"/>
    <dbReference type="OMA" id="GPEKKFA"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003723">
        <property type="term" value="F:RNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0120159">
        <property type="term" value="F:rRNA pseudouridine synthase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000455">
        <property type="term" value="P:enzyme-directed rRNA pseudouridine synthesis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="CDD" id="cd00165">
        <property type="entry name" value="S4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.10.290.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020103">
        <property type="entry name" value="PsdUridine_synth_cat_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006145">
        <property type="entry name" value="PsdUridine_synth_RsuA/RluA"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002942">
        <property type="entry name" value="S4_RNA-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036986">
        <property type="entry name" value="S4_RNA-bd_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00849">
        <property type="entry name" value="PseudoU_synth_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01479">
        <property type="entry name" value="S4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00363">
        <property type="entry name" value="S4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55120">
        <property type="entry name" value="SSF55120"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="S4" evidence="2">
        <location>
            <begin position="344"/>
            <end position="402"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="332"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="27"/>
            <end position="45"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="116"/>
            <end position="303"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="SMART" id="SM00363"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ABX33813.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="591" mass="65933" checksum="0D0163360ACD6638" modified="2008-01-15" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="64" xmlns="http://uniprot.org/uniprot">
    <accession>A9BUM1</accession>
    <name>A9BUM1_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Daci_1485</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="2" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX34129.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012203415.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_1485"/>
    <dbReference type="ESTHER" id="delsc-f6auj2">
        <property type="family name" value="abh_upf00227"/>
    </dbReference>
    <dbReference type="MEROPS" id="S09.A40"/>
    <dbReference type="PRIDE" id="A9BUM1"/>
    <dbReference type="EnsemblBacteria" id="ABX34129">
        <property type="protein sequence ID" value="ABX34129"/>
        <property type="gene ID" value="Daci_1485"/>
    </dbReference>
    <dbReference type="GeneID" id="60686023"/>
    <dbReference type="KEGG" id="dac:Daci_1485"/>
    <dbReference type="eggNOG" id="COG3150">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_090996_1_0_4"/>
    <dbReference type="OMA" id="MLAHYPG"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.1820">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029058">
        <property type="entry name" value="AB_hydrolase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008886">
        <property type="entry name" value="UPF0227/Esterase_YqiA"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR35602">
        <property type="entry name" value="PTHR35602"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF05728">
        <property type="entry name" value="UPF0227"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53474">
        <property type="entry name" value="SSF53474"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ABX34129.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="194" mass="22205" checksum="2E9935965D31D962" modified="2008-01-15" version="1">MTTTHLLYLHGFRSSPQSNKARRLAEHVATRHPHVRWWSPQLPPSPREAAALIADGIGSWPRETMAVIGSSLGGYYASWVAQLARCRSVMINPAVNPARDLEKYIGEQTSWHNPEERFFFRREYIEELRALDTRHMTPAAPEMLLAAEGDEVLDWREMSARYPHALQIIQEGGDHALSNFEEYLPQLDEFLNLA</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="52" xmlns="http://uniprot.org/uniprot">
    <accession>A9BUR1</accession>
    <name>A9BUR1_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Putative iron-regulated protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Daci_1525</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="4" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX34169.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_1525"/>
    <dbReference type="PRIDE" id="A9BUR1"/>
    <dbReference type="EnsemblBacteria" id="ABX34169">
        <property type="protein sequence ID" value="ABX34169"/>
        <property type="gene ID" value="Daci_1525"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_1525"/>
    <dbReference type="eggNOG" id="COG3487">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_048993_0_0_4"/>
    <dbReference type="OMA" id="VDDWEGK"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.1420.20">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018976">
        <property type="entry name" value="Imelysin-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038352">
        <property type="entry name" value="Imelysin_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF09375">
        <property type="entry name" value="Peptidase_M75"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <feature type="domain" description="Peptidase_M75" evidence="2">
        <location>
            <begin position="78"/>
            <end position="406"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022729"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF09375"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ABX34169.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="428" mass="46759" checksum="C04F9199752E821E" modified="2008-01-15" version="1">MRRYLAGFANKNNSHYSLAFRVLQPPILSAMHPILIAAALALGAAAPMSQAAAAGTVQQPVKKSLSVAEVVKHYGTLVHANYSDSISSAKTMQKAIAAFLAAPSEQGLNQARKAWLDAREYYGQTEAFRFYAGPIDNDQGPEGQINAWPMDESYVDYVEGNPNAGIINNRKEAITKKRLAELNEHDGEENVSTGWHAIEFMLWGQDLNDKGPGARPYTDFVDGKKSNADRRREYLKVVTALLIEDLQSVADQWKPGSPKNFRAQFEKKPDDALRRIFVGLGSLSRGELAGERLEVALASRDQEDEHSCFSDNTHRDAVTNAQGILNVWQGSYKRLDGSELQGPGIKDWVASKDSALADRTTRQITQSVQAAQAIPAPFDQAIQGARDSASRAKIQATIDSLVQQSKDLVEAANAVGITQLNLVDPKAN</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="42" xmlns="http://uniprot.org/uniprot">
    <accession>A9BUS4</accession>
    <name>A9BUS4_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Daci_1538</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="2" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX34182.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_1538"/>
    <dbReference type="PRIDE" id="A9BUS4"/>
    <dbReference type="EnsemblBacteria" id="ABX34182">
        <property type="protein sequence ID" value="ABX34182"/>
        <property type="gene ID" value="Daci_1538"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_1538"/>
    <dbReference type="eggNOG" id="ENOG5032XHA">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_955532_0_0_4"/>
    <dbReference type="OMA" id="ARWEVRS"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ABX34182.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="292" mass="32095" checksum="6FBEECC002348257" modified="2008-01-15" version="1">MTTYANLSTQTDIVLPPLLSDLLASGKTVYGPDWAATWRQRCLQDPPLFMSWQDFEWIDAEASREIIEGWLHPGAQNGRSFLPFAQSGAGDAWCLTPLDTHGVGVALVLHDDEASSVSHACFDDFVCAGFLQAFADLSDQLDDFSQPEALQLLRADVAQAARFMTQELGDYLQDFCRRPLEIRPWRDGPRARVRQVASLISQDELAVELGRLPAVDLSFPVVARWEVRSVEEGGARHGLAPEPAKIDWRTLAADPLQKMAAIRACQSEHGCSLGQAKAMVDQYIGGSVNAQA</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="69" xmlns="http://uniprot.org/uniprot">
    <accession>A9BUV3</accession>
    <name>A9BUV3_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Acyl-CoA dehydrogenase type 2 domain</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ordered locus">Daci_1773</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="5" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX34415.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012203700.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_1773"/>
    <dbReference type="PRIDE" id="A9BUV3"/>
    <dbReference type="EnsemblBacteria" id="ABX34415">
        <property type="protein sequence ID" value="ABX34415"/>
        <property type="gene ID" value="Daci_1773"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_1773"/>
    <dbReference type="eggNOG" id="COG1960">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_018204_10_0_4"/>
    <dbReference type="OMA" id="KAPFDEV"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0050660">
        <property type="term" value="F:flavin adenine dinucleotide binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004497">
        <property type="term" value="F:monooxygenase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016627">
        <property type="term" value="F:oxidoreductase activity, acting on the CH-CH group of donors"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.540.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.110.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013107">
        <property type="entry name" value="Acyl-CoA_DH_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR046373">
        <property type="entry name" value="Acyl-CoA_Oxase/DH_mid-dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036250">
        <property type="entry name" value="AcylCo_DH-like_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013786">
        <property type="entry name" value="AcylCoA_DH/ox_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037069">
        <property type="entry name" value="AcylCoA_DH/ox_N_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009100">
        <property type="entry name" value="AcylCoA_DH/oxidase_NM_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08028">
        <property type="entry name" value="Acyl-CoA_dh_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02771">
        <property type="entry name" value="Acyl-CoA_dh_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47203">
        <property type="entry name" value="SSF47203"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56645">
        <property type="entry name" value="SSF56645"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0503">Monooxygenase</keyword>
    <keyword evidence="1" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Acyl-CoA_dh_N" evidence="2">
        <location>
            <begin position="15"/>
            <end position="113"/>
        </location>
    </feature>
    <feature type="domain" description="Acyl-CoA_dh_2" evidence="3">
        <location>
            <begin position="233"/>
            <end position="367"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023033"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF02771"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF08028"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="ABX34415.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="393" mass="42844" checksum="27B39B8B4DB5803A" modified="2008-01-15" version="1">MSQAEAVPADPIATAQDLAQRLAATAARRDAAGGTPKAERDALRASGLLALSIPRELGGLGADWVQTLETVRILATADGSLAHVYGFQHLHLATVQLFGQPAQWRPWLLQTARHRWFWGNTLNPLDRRTTATRQPGHWEFSGKKSFTSGALDSQMLVASAIDADSGQLLIGVVPTERTGITLLRDWDNMGQRQTDSGSALFERVRVEAAELLLDPGPLSTPHAALRPLLAQLILAHLFLGIAQGALEQARGYTLNEARPWFKSPADAAGADPHIQALYGELWAALEGARLLTLQAAQRFDAAWRRGPALTAHERGEVAVAVTAAKIATTRSGLDLSSRIFEATGARATHAALRFDRFWRNLRTQTLHDPLHYKLQELGDWVLNGTHPQPSFYS</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="78" xmlns="http://uniprot.org/uniprot">
    <accession>A9BUZ6</accession>
    <name>A9BUZ6_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">Protein-export protein SecB</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="primary">secB</name>
        <name evidence="4" type="ordered locus">Daci_1816</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="5" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="3">One of the proteins required for the normal export of preproteins out of the cell cytoplasm. It is a molecular chaperone that binds to a subset of precursor proteins, maintaining them in a translocation-competent state. It also specifically binds to its receptor SecA.</text>
    </comment>
    <comment type="subunit">
        <text evidence="3">Homotetramer, a dimer of dimers. One homotetramer interacts with 1 SecA dimer.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="3">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="1 3">Belongs to the SecB family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX34458.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_1816"/>
    <dbReference type="PRIDE" id="A9BUZ6"/>
    <dbReference type="EnsemblBacteria" id="ABX34458">
        <property type="protein sequence ID" value="ABX34458"/>
        <property type="gene ID" value="Daci_1816"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_1816"/>
    <dbReference type="eggNOG" id="COG1952">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_111574_1_0_4"/>
    <dbReference type="OMA" id="CPNVLFP"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051082">
        <property type="term" value="F:unfolded protein binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006457">
        <property type="term" value="P:protein folding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051262">
        <property type="term" value="P:protein tetramerization"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015031">
        <property type="term" value="P:protein transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.10.420.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00821">
        <property type="entry name" value="SecB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003708">
        <property type="entry name" value="SecB"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035958">
        <property type="entry name" value="SecB-like_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR36918">
        <property type="entry name" value="PTHR36918"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02556">
        <property type="entry name" value="SecB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR01594">
        <property type="entry name" value="SECBCHAPRONE"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54611">
        <property type="entry name" value="SSF54611"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00809">
        <property type="entry name" value="secB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-0143">Chaperone</keyword>
    <keyword evidence="3" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="3" id="KW-0653">Protein transport</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 3" id="KW-0811">Translocation</keyword>
    <keyword evidence="3" id="KW-0813">Transport</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00009990"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023010"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00821"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="ABX34458.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="167" mass="18338" checksum="CC72A89956D8AA27" modified="2008-01-15" version="1">MPWSPNQGFLPRKTDSMAEQDTPVFQIQRVYLKDLSLEQPNSPAILLEQEQPSVDIQLGVEATPVAEGIYEVAVTATVQTKIQDKTVFLVEAKQAGIFEIRNVPEDQMGGVIGIACPQIIYPYLRGNVADVVTRAGFPPVHLAEINFQAMYEQQQAAAQADGNSLPQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="65" xmlns="http://uniprot.org/uniprot">
    <accession>A9BV83</accession>
    <name>A9BV83_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="8">Xanthine permease</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="8" type="ordered locus">Daci_2107</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="9" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the nucleobase:cation symporter-2 (NCS2) (TC 2.A.40) family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX34747.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012204030.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_2107"/>
    <dbReference type="PRIDE" id="A9BV83"/>
    <dbReference type="EnsemblBacteria" id="ABX34747">
        <property type="protein sequence ID" value="ABX34747"/>
        <property type="gene ID" value="Daci_2107"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_2107"/>
    <dbReference type="eggNOG" id="COG2233">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_017959_8_2_4"/>
    <dbReference type="OMA" id="AMIFGVC"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015205">
        <property type="term" value="F:nucleobase transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006043">
        <property type="entry name" value="NCS2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006042">
        <property type="entry name" value="Xan_ur_permease"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00860">
        <property type="entry name" value="Xan_ur_permease"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00801">
        <property type="entry name" value="ncs2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="6 7" id="KW-0472">Membrane</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4 7" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="5 7" id="KW-1133">Transmembrane helix</keyword>
    <keyword evidence="3" id="KW-0813">Transport</keyword>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="21"/>
            <end position="43"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="80"/>
            <end position="99"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="105"/>
            <end position="127"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="134"/>
            <end position="160"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="215"/>
            <end position="232"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="239"/>
            <end position="261"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="288"/>
            <end position="311"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="361"/>
            <end position="380"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="392"/>
            <end position="414"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="426"/>
            <end position="445"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="457"/>
            <end position="475"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00008821"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022448"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="ABX34747.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="495" mass="51350" checksum="14EF4EA9707B4D49" modified="2008-01-15" version="1">MQSSVHPVDEMLPAGKLTALGLQHVLVMYAGAVAVPLIVGRALNLPPEQVAHLISADLFCCGLITLIQAMGATQWFGIKLPVMMGVTFASVAPMVSMAQSTGGSAGAGLIFGSVIGAGIVSILIAPLISRMLRFFPPVVTGTIIAVIGISLMRVGVNWIFGNPVGPTAPSVPNPEHLKWLADAQATAGAPGSSLPPVPKGFAVVPTIPNPKYGDLTGVGISAIVLLSILLIARFAKGFLANVSVLMGILIGGVLSVAMGLMDFSKVAKAEWFTMVLPFEIATPVFDPILILTMSLVMVVVMIESTGMFLALGDMTDRKISQDELTRGLRTDGLGTLIGGIFNTFPYTSFSQNVGLVAVTGVKSRWVCVAGGVILIVLGVLPKMGALVESLPTVVLGGAGLVMFGMVASTGIRILSNVDFQTNRNNAMIVAVSIGVGMIPLVAPNFRQWMPHAIHPLIESGILLASITAVALNIFFNGASSDTSAAVQAARQADAH</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="80" xmlns="http://uniprot.org/uniprot">
    <accession>A9BVA8</accession>
    <name>A9BVA8_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Transcriptional regulator, Crp/Fnr family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ordered locus">Daci_2132</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="5" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX34772.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012204055.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_2132"/>
    <dbReference type="PRIDE" id="A9BVA8"/>
    <dbReference type="EnsemblBacteria" id="ABX34772">
        <property type="protein sequence ID" value="ABX34772"/>
        <property type="gene ID" value="Daci_2132"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_2132"/>
    <dbReference type="eggNOG" id="COG0664">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_075053_1_1_4"/>
    <dbReference type="OMA" id="DQLNARC"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006355">
        <property type="term" value="P:regulation of transcription, DNA-templated"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd00038">
        <property type="entry name" value="CAP_ED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.120.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018490">
        <property type="entry name" value="cNMP-bd-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000595">
        <property type="entry name" value="cNMP-bd_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012318">
        <property type="entry name" value="HTH_CRP"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014710">
        <property type="entry name" value="RmlC-like_jellyroll"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036390">
        <property type="entry name" value="WH_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00027">
        <property type="entry name" value="cNMP_binding"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13545">
        <property type="entry name" value="HTH_Crp_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00100">
        <property type="entry name" value="cNMP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00419">
        <property type="entry name" value="HTH_CRP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46785">
        <property type="entry name" value="SSF46785"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51206">
        <property type="entry name" value="SSF51206"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50042">
        <property type="entry name" value="CNMP_BINDING_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51063">
        <property type="entry name" value="HTH_CRP_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Cyclic nucleotide-binding" evidence="2">
        <location>
            <begin position="16"/>
            <end position="136"/>
        </location>
    </feature>
    <feature type="domain" description="HTH crp-type" evidence="3">
        <location>
            <begin position="150"/>
            <end position="221"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS50042"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="PROSITE" id="PS51063"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="ABX34772.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="231" mass="25726" checksum="76FAA9B97DA84569" modified="2008-01-15" version="1">MQPFPTISDVLKSAPFAPSLSKAHLLRLRREVLLREIPAGTSLYQKARRADHWTGVVRGVVKIHALSPTGRTTTLATFPPGCWFGEGTLLKREGWPFDATAIEDTLLALMPAATFHWLLEHSLGFNRFLLDQVNARLGQFISRCEHARLHHSSRHVAHCISELTDARLYPGAENRHLGMSQEELASLAGVSRQIVNRALGELEDIGAVRVSYGSLTLIDPEGLRRFSESFE</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="62" xmlns="http://uniprot.org/uniprot">
    <accession>A9BVF9</accession>
    <name>A9BVF9_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Enoyl-CoA hydratase/isomerase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_2388</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the enoyl-CoA hydratase/isomerase family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX35026.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012204308.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_2388"/>
    <dbReference type="PRIDE" id="A9BVF9"/>
    <dbReference type="EnsemblBacteria" id="ABX35026">
        <property type="protein sequence ID" value="ABX35026"/>
        <property type="gene ID" value="Daci_2388"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_2388"/>
    <dbReference type="eggNOG" id="COG1024">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_009834_7_3_4"/>
    <dbReference type="OMA" id="SCDMVVC"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016853">
        <property type="term" value="F:isomerase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.12.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029045">
        <property type="entry name" value="ClpP/crotonase-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001753">
        <property type="entry name" value="Enoyl-CoA_hydra/iso"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014748">
        <property type="entry name" value="Enoyl-CoA_hydra_C"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00378">
        <property type="entry name" value="ECH_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52096">
        <property type="entry name" value="SSF52096"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2" id="KW-0413">Isomerase</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00005254"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX35026.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="269" mass="28985" checksum="A3D364EE91D9FBC9" modified="2008-01-15" version="1">MNASTPPSEASPLLDVQRDARGVVRLTLNDPQRFNALGEQMLTQLQQALDDVARDESVRVVVLSAAGKAFCAGHNLKDMAAHPQLDYYQKLFAQCSRMMLSIHRLPVPVIARVHGIATAAGCQLVAQCDLAVAAQAARFATSGIHYGLFCATPSVPLVRNVPAKQAMEMLLTGDFIDAQQALEQGLVNRVVAEEALDDAVEHFVQSIVSKPRAAVAMGKALVYRQREMGIEAAYQLAGQTMAANMMDADAQEGAQAFAAKREPAWKTGR</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="65" xmlns="http://uniprot.org/uniprot">
    <accession>A9BVI2</accession>
    <name>A9BVI2_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Phosphonate metabolism-associated iron-containing alcohol dehydrogenase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Daci_2411</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="4" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX35049.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012204331.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_2411"/>
    <dbReference type="PRIDE" id="A9BVI2"/>
    <dbReference type="EnsemblBacteria" id="ABX35049">
        <property type="protein sequence ID" value="ABX35049"/>
        <property type="gene ID" value="Daci_2411"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_2411"/>
    <dbReference type="eggNOG" id="COG1454">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_007207_0_0_4"/>
    <dbReference type="OMA" id="GDCLATR"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016616">
        <property type="term" value="F:oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="GO" id="GO:0017000">
        <property type="term" value="P:antibiotic biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd08182">
        <property type="entry name" value="HEPD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001670">
        <property type="entry name" value="ADH_Fe/GldA"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018211">
        <property type="entry name" value="ADH_Fe_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017775">
        <property type="entry name" value="ADH_Fe_phosphonate-assoc"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR039697">
        <property type="entry name" value="Alcohol_dehydrogenase_Fe"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035873">
        <property type="entry name" value="PhpC"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11496">
        <property type="entry name" value="PTHR11496"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00465">
        <property type="entry name" value="Fe-ADH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR03405">
        <property type="entry name" value="Phn_Fe-ADH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00913">
        <property type="entry name" value="ADH_IRON_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Fe-ADH" evidence="2">
        <location>
            <begin position="7"/>
            <end position="351"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023002"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF00465"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ABX35049.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="362" mass="38607" checksum="1F4598C9E856044B" modified="2008-01-15" version="1">MWTYHNPVAIHAGPGRLDRLPELLAGRDCLLVTFPEAESLGLVQQLRQRLGSQLRGVVDGIAPNPDVQWLAPLYDRVHREYAEVPCIVALGGGSAIDSAKALMCATPTRRFGELLQALEQGLALPAAGHKALIAIPTTAGTGSEVTPWATIWDQAAGRKHSLHQHWTWPEAAIIDAQLMQSLPAGATLASGLDALSHALESIWNRHRNPVSTTLAVGAARRTLATLPALMQDLGSLPLRSRMAEAALMAGLAFSNTRTALAHSLSYDITLRHGVAHGIACSFSLPLVLEMALGADDQADAALLSIFDAATGELAVQRLRNFLEGLGVATDPAHYGVPGDEWQQLLQSAASGPRGRNFIRTLE</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="83" xmlns="http://uniprot.org/uniprot">
    <accession>A9BVI5</accession>
    <name>A9BVI5_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="6 8">S-(hydroxymethyl)glutathione dehydrogenase</fullName>
            <ecNumber evidence="5 8">1.1.1.284</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="10" type="ordered locus">Daci_2414</name>
    </gene>
    <organism evidence="10 11">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="10 11" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="11">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="11" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="11">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="1 8">
            <text>NAD(+) + S-(hydroxymethyl)glutathione = H(+) + NADH + S-formylglutathione</text>
            <dbReference type="Rhea" id="RHEA:19985"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:57540"/>
            <dbReference type="ChEBI" id="CHEBI:57688"/>
            <dbReference type="ChEBI" id="CHEBI:57945"/>
            <dbReference type="ChEBI" id="CHEBI:58758"/>
            <dbReference type="EC" id="1.1.1.284"/>
        </reaction>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="2">
            <text>NADP(+) + S-(hydroxymethyl)glutathione = H(+) + NADPH + S-formylglutathione</text>
            <dbReference type="Rhea" id="RHEA:19981"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:57688"/>
            <dbReference type="ChEBI" id="CHEBI:57783"/>
            <dbReference type="ChEBI" id="CHEBI:58349"/>
            <dbReference type="ChEBI" id="CHEBI:58758"/>
            <dbReference type="EC" id="1.1.1.284"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="3 8">
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </cofactor>
    </comment>
    <comment type="similarity">
        <text evidence="4 8">Belongs to the zinc-containing alcohol dehydrogenase family. Class-III subfamily.</text>
    </comment>
    <dbReference type="EC" id="1.1.1.284" evidence="5 8"/>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX35052.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012204334.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_2414"/>
    <dbReference type="PRIDE" id="A9BVI5"/>
    <dbReference type="EnsemblBacteria" id="ABX35052">
        <property type="protein sequence ID" value="ABX35052"/>
        <property type="gene ID" value="Daci_2414"/>
    </dbReference>
    <dbReference type="GeneID" id="60686787"/>
    <dbReference type="KEGG" id="dac:Daci_2414"/>
    <dbReference type="eggNOG" id="COG1062">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_026673_14_0_4"/>
    <dbReference type="OMA" id="RVKMIAT"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0106322">
        <property type="term" value="F:S-(hydroxymethyl)glutathione dehydrogenase NAD activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0106321">
        <property type="term" value="F:S-(hydroxymethyl)glutathione dehydrogenase NADP activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008270">
        <property type="term" value="F:zinc ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006069">
        <property type="term" value="P:ethanol oxidation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd08300">
        <property type="entry name" value="alcohol_DH_class_III"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013149">
        <property type="entry name" value="ADH-like_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014183">
        <property type="entry name" value="ADH_3"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013154">
        <property type="entry name" value="ADH_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002328">
        <property type="entry name" value="ADH_Zn_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011032">
        <property type="entry name" value="GroES-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036291">
        <property type="entry name" value="NAD(P)-bd_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020843">
        <property type="entry name" value="PKS_ER"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08240">
        <property type="entry name" value="ADH_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00107">
        <property type="entry name" value="ADH_zinc_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00829">
        <property type="entry name" value="PKS_ER"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50129">
        <property type="entry name" value="SSF50129"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51735">
        <property type="entry name" value="SSF51735"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR02818">
        <property type="entry name" value="adh_III_F_hyde"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00059">
        <property type="entry name" value="ADH_ZINC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="8" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="8" id="KW-0520">NAD</keyword>
    <keyword evidence="7 8" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="11" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="8" id="KW-0862">Zinc</keyword>
    <feature type="domain" description="PKS_ER" evidence="9">
        <location>
            <begin position="12"/>
            <end position="367"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001030"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00001646"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00001947"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00010902"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00012309"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00021865"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023002"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="RuleBase" id="RU362016"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="9">
        <source>
            <dbReference type="SMART" id="SM00829"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="EMBL" id="ABX35052.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="369" mass="38849" checksum="F96EF10358B4CE08" modified="2008-01-15" version="1">MKSKAAVAFKAGEPLQIVEIDVAPPKKGEVLIKITHTGVCHTDAFTLSGDDPEGIFPAVLGHEGAGIVVEVGEGVTSVKPGDHVIPLYTAECGECLFCKSGKTNLCVSVRATQGKGVMPDGTTRFSYNGEPIYHYMGCSTFSEYTVVAEVSLAKIHPDANPEQVCLLGCGVTTGLGAVKNTAKVQEGDTVAVFGLGGIGLAVIQGAKLAKAGRIIAVDTNPSKFDLARTFGATDCVNPKDFDKPIQQVIVEMTGWGVDHSFECIGNVNVMRAALECAHRGWGQSVIIGVAGAGQEISTRPFQLVTGRKWLGTAFGGVKGRSELPGMVEQAMSGEIQLAPFVTHTMGLPEINEAFDLMHEGKSIRSVVVY</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="63" xmlns="http://uniprot.org/uniprot">
    <accession>A9BVK9</accession>
    <name>A9BVK9_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Transcriptional regulator, XRE family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Daci_2438</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="4" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX35076.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_2438"/>
    <dbReference type="PRIDE" id="A9BVK9"/>
    <dbReference type="EnsemblBacteria" id="ABX35076">
        <property type="protein sequence ID" value="ABX35076"/>
        <property type="gene ID" value="Daci_2438"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_2438"/>
    <dbReference type="eggNOG" id="COG1396">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_083309_0_0_4"/>
    <dbReference type="OMA" id="VDRHWNL"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd00093">
        <property type="entry name" value="HTH_XRE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.260.40">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001387">
        <property type="entry name" value="Cro/C1-type_HTH"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010982">
        <property type="entry name" value="Lambda_DNA-bd_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041413">
        <property type="entry name" value="MLTR_LBD"/>
    </dbReference>
    <dbReference type="Pfam" id="PF17765">
        <property type="entry name" value="MLTR_LBD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00530">
        <property type="entry name" value="HTH_XRE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47413">
        <property type="entry name" value="SSF47413"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50943">
        <property type="entry name" value="HTH_CROC1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HTH cro/C1-type" evidence="2">
        <location>
            <begin position="48"/>
            <end position="102"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="16"/>
            <end position="42"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS50943"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ABX35076.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="306" mass="33547" checksum="AAE5B75B3D7F4866" modified="2008-01-15" version="1">MDCMVRRRLHRVDNLAGHGRHAGPAATMRTMTSTAHPPSARSPFGDHLRHWRQHRRLSQQGLALEAEISTRHLSYVETGRAQPSREMVLRLVERLGVPLRERNALLVAAGYAPMYQARPLDHPDLAAARQAVDLVLKGHEPNPALAVDRHWNLVAANAIVPLLLAGVAPWLLEPPVNVLRLSLHPEGLGPSLANAAHWRAHLLHRLQQQIAATSDAQLQALHDEIAAYPFKEDEADSHGAAPASHIAVPFALDTDHGRLNFISTITIFGTPVDVTLQELAVESFFPADTATQVLLSQLRSGTAKHP</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="40" xmlns="http://uniprot.org/uniprot">
    <accession>A9BVT2</accession>
    <name>A9BVT2_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Daci_2807</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="4" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX35445.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012204655.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_2807"/>
    <dbReference type="PRIDE" id="A9BVT2"/>
    <dbReference type="EnsemblBacteria" id="ABX35445">
        <property type="protein sequence ID" value="ABX35445"/>
        <property type="gene ID" value="Daci_2807"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_2807"/>
    <dbReference type="eggNOG" id="ENOG50318AF">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_1802979_0_0_4"/>
    <dbReference type="OMA" id="PWIRPLQ"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="2">
        <location>
            <begin position="1"/>
            <end position="26"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5002733118" evidence="2">
        <location>
            <begin position="27"/>
            <end position="143"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="24"/>
            <end position="96"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="119"/>
            <end position="143"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="59"/>
            <end position="74"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ABX35445.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="143" mass="15491" checksum="6375464750D2B18C" modified="2008-01-15" version="1">MKNPWIRPLQLCIGAAVLGMAGLATAQPAPGPDGMPPPPPAAEKAKPHHHHKKHAEPKGQGKRGYDRRDPAQHEAAAVQEQSRRGGVQSGDHFQRNALARCDVFKNEGDRRSCVERVKDGQVSGSVEGGGVLREYTEQVPVRQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="83" xmlns="http://uniprot.org/uniprot">
    <accession>A9BVU0</accession>
    <name>A9BVU0_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="6">GntR domain protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ordered locus">Daci_2815</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="7" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX35453.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_2815"/>
    <dbReference type="PRIDE" id="A9BVU0"/>
    <dbReference type="EnsemblBacteria" id="ABX35453">
        <property type="protein sequence ID" value="ABX35453"/>
        <property type="gene ID" value="Daci_2815"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_2815"/>
    <dbReference type="eggNOG" id="COG2186">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_017584_9_1_4"/>
    <dbReference type="OMA" id="QNHMYNA"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003700">
        <property type="term" value="F:DNA-binding transcription factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd07377">
        <property type="entry name" value="WHTH_GntR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.120.530">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011711">
        <property type="entry name" value="GntR_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008920">
        <property type="entry name" value="TF_FadR/GntR_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000524">
        <property type="entry name" value="Tscrpt_reg_HTH_GntR"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036390">
        <property type="entry name" value="WH_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07729">
        <property type="entry name" value="FCD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00392">
        <property type="entry name" value="GntR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00035">
        <property type="entry name" value="HTHGNTR"/>
    </dbReference>
    <dbReference type="SMART" id="SM00895">
        <property type="entry name" value="FCD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00345">
        <property type="entry name" value="HTH_GNTR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46785">
        <property type="entry name" value="SSF46785"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48008">
        <property type="entry name" value="SSF48008"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50949">
        <property type="entry name" value="HTH_GNTR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="2" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0804">Transcription</keyword>
    <keyword evidence="1" id="KW-0805">Transcription regulation</keyword>
    <feature type="domain" description="HTH gntR-type" evidence="5">
        <location>
            <begin position="21"/>
            <end position="89"/>
        </location>
    </feature>
    <feature type="coiled-coil region" evidence="4">
        <location>
            <begin position="107"/>
            <end position="134"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023015"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023163"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="PROSITE" id="PS50949"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="ABX35453.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="264" mass="28923" checksum="6FADDCA3CB01D6EB" modified="2008-01-15" version="1">MSPQPPTPSMTVSFSAIQPGLKLADQVARQLEARIRAGNLQPGQKLPTEAELVQQLEVSRTVVREAVSQLKSRNLVESRQGSGVFVKAAGIEPLDFEGLPAAGRNALIQITEVRRALEAEVAELAARRRSEEDMQRIHDAESALAEAVRLGRDGVEEDMAFHRAIAQASGNPFLISTLDYLSQFLRGAMRITRANEARREDFGKAVEREHHSIVLAIEAGDPKAARKAAATHMGNAIDRIHRADASFWEQDGERLARDILAAKP</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="64" xmlns="http://uniprot.org/uniprot">
    <accession>A9BVW5</accession>
    <name>A9BVW5_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">EamA domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Daci_2840</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="4" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX35478.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012204688.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_2840"/>
    <dbReference type="PRIDE" id="A9BVW5"/>
    <dbReference type="EnsemblBacteria" id="ABX35478">
        <property type="protein sequence ID" value="ABX35478"/>
        <property type="gene ID" value="Daci_2840"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_2840"/>
    <dbReference type="eggNOG" id="COG5006">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_057295_0_1_4"/>
    <dbReference type="OMA" id="MWAAYIV"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000620">
        <property type="entry name" value="EamA_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00892">
        <property type="entry name" value="EamA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="40"/>
            <end position="58"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="70"/>
            <end position="90"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="96"/>
            <end position="114"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="121"/>
            <end position="144"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="150"/>
            <end position="168"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="180"/>
            <end position="197"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="209"/>
            <end position="227"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="239"/>
            <end position="259"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="265"/>
            <end position="283"/>
        </location>
    </feature>
    <feature type="domain" description="EamA" evidence="2">
        <location>
            <begin position="151"/>
            <end position="279"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF00892"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ABX35478.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="300" mass="30872" checksum="C510E9B326DF1306" modified="2008-01-15" version="1">MTTNTTWNRAWPLLAVLGSVTALGVGTSLAKQLFPVLGAQGTSALRVGFAALILVAIWRPWRWTLARPQAWALLRFGVALGAMNLLFYMALRTIPFGLAVAIEFSGPLAVAIYHSRRPVDFVWLALAVAGLALILPIGGVGAGGLVLEPVGIACAVGAAICWALYILLGQRLGSIPGGQAVSLGLVFAAMVVVPFGVAEAGAKLLQPSILAFGLVVAAISSALPYTLEMMALRRLPPATFGIALATEPAIAALMGMLLLHEHLVGTQWLAIACIMGAAMGSAITRPAAAAKAPAEVTPAG</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="36" xmlns="http://uniprot.org/uniprot">
    <accession>A9BW40</accession>
    <name>A9BW40_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Daci_3218</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="2" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX35856.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_3218"/>
    <dbReference type="PRIDE" id="A9BW40"/>
    <dbReference type="EnsemblBacteria" id="ABX35856">
        <property type="protein sequence ID" value="ABX35856"/>
        <property type="gene ID" value="Daci_3218"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_3218"/>
    <dbReference type="eggNOG" id="ENOG503025X">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_1472910_0_0_4"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ABX35856.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="183" mass="20307" checksum="1B4ACA419FBB7E79" modified="2008-01-15" version="1">MARARNIKPGLFKNEILGVADPIYTLLFEGLWVLADREGRLEDRPLRIKAEVFPYRDGINVDEMLSWLQASGFIVREPSGSILIVNRQQWYDEKTPAQVNAEAAARRARRRKAMPAWAHAGEIKAVYEAARLATQATGQEHHVDHIVPLAGALVCGLHVAANLQVIPAVGNLKKSNKFEVSHG</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="51" xmlns="http://uniprot.org/uniprot">
    <accession>A9BWE4</accession>
    <name>A9BWE4_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ordered locus">Daci_3528</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="5" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX36164.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012205364.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_3528"/>
    <dbReference type="PRIDE" id="A9BWE4"/>
    <dbReference type="EnsemblBacteria" id="ABX36164">
        <property type="protein sequence ID" value="ABX36164"/>
        <property type="gene ID" value="Daci_3528"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_3528"/>
    <dbReference type="eggNOG" id="ENOG502Z8IE">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_012035_1_0_4"/>
    <dbReference type="OMA" id="LPWQSDF"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="CDD" id="cd14731">
        <property type="entry name" value="LodA_like_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR033798">
        <property type="entry name" value="LodA-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041173">
        <property type="entry name" value="LodA_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041168">
        <property type="entry name" value="LodA_N"/>
    </dbReference>
    <dbReference type="Pfam" id="PF18417">
        <property type="entry name" value="LodA_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF17990">
        <property type="entry name" value="LodA_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="LodA_N" evidence="2">
        <location>
            <begin position="13"/>
            <end position="221"/>
        </location>
    </feature>
    <feature type="domain" description="LodA_C" evidence="3">
        <location>
            <begin position="345"/>
            <end position="497"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="590"/>
            <end position="633"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF17990"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF18417"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="ABX36164.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="633" mass="69787" checksum="CECDFCCA09DF914E" modified="2008-01-15" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="64" xmlns="http://uniprot.org/uniprot">
    <accession>A9BWI6</accession>
    <name>A9BWI6_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="9">MotA/TolQ/ExbB proton channel</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="9" type="ordered locus">Daci_3572</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="9 10" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="10" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1 6">Membrane</location>
            <topology evidence="1 6">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="6">Belongs to the exbB/tolQ family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX36206.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012205406.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_3572"/>
    <dbReference type="PRIDE" id="A9BWI6"/>
    <dbReference type="EnsemblBacteria" id="ABX36206">
        <property type="protein sequence ID" value="ABX36206"/>
        <property type="gene ID" value="Daci_3572"/>
    </dbReference>
    <dbReference type="GeneID" id="60687781"/>
    <dbReference type="KEGG" id="dac:Daci_3572"/>
    <dbReference type="eggNOG" id="COG0811">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_053325_4_5_4"/>
    <dbReference type="OMA" id="AYIGYNH"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015031">
        <property type="term" value="P:protein transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002898">
        <property type="entry name" value="MotA_ExbB_proton_chnl"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01618">
        <property type="entry name" value="MotA_ExbB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="5 7" id="KW-0472">Membrane</keyword>
    <keyword evidence="6" id="KW-0653">Protein transport</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 7" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="4 7" id="KW-1133">Transmembrane helix</keyword>
    <keyword evidence="6" id="KW-0813">Transport</keyword>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="12"/>
            <end position="31"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="111"/>
            <end position="134"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="154"/>
            <end position="179"/>
        </location>
    </feature>
    <feature type="domain" description="MotA_ExbB" evidence="8">
        <location>
            <begin position="66"/>
            <end position="193"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="RuleBase" id="RU004057"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="Pfam" id="PF01618"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="ABX36206.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="210" mass="21852" checksum="0AFA6D0BFBE65400" modified="2008-01-15" version="1">MLSIIQAAGWPIWPLIACSILALALVFERFVALKTARVAPPALLGEAISVSSRGLPSQEVVQQLSQNSTLGEVLASGLRALQAHPDSSEEELRASMEGAGRAAAHTLEKHLSALATIASAAPLLGLLGTVIGMIEIFGSQGGASATGGGNPAQLAAGISIALYNTAFGLIVAIPALIFWRYFRARVDGYLLGMELASEQFVRHLVRVGGK</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="82" xmlns="http://uniprot.org/uniprot">
    <accession>A9BWJ8</accession>
    <name>A9BWJ8_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Transcriptional regulator, LysR family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Daci_3584</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="4" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the LysR transcriptional regulatory family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX36218.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012205418.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_3584"/>
    <dbReference type="PRIDE" id="A9BWJ8"/>
    <dbReference type="EnsemblBacteria" id="ABX36218">
        <property type="protein sequence ID" value="ABX36218"/>
        <property type="gene ID" value="Daci_3584"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_3584"/>
    <dbReference type="eggNOG" id="COG0583">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_039613_16_2_4"/>
    <dbReference type="OMA" id="AQHSCIY"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003700">
        <property type="term" value="F:DNA-binding transcription factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005119">
        <property type="entry name" value="LysR_subst-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000847">
        <property type="entry name" value="Tscrpt_reg_HTH_LysR"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036390">
        <property type="entry name" value="WH_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00126">
        <property type="entry name" value="HTH_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03466">
        <property type="entry name" value="LysR_substrate"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46785">
        <property type="entry name" value="SSF46785"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50931">
        <property type="entry name" value="HTH_LYSR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HTH lysR-type" evidence="2">
        <location>
            <begin position="8"/>
            <end position="65"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00009437"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS50931"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ABX36218.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="310" mass="34291" checksum="A5891D883688E95D" modified="2008-01-15" version="1">MSTNQALPLFGEMAIFVKVVDTGSFSEAARQLGSTPSATSRGVARLERALGLRLLERTTRKLRLSEAGREVHARCLDMVGAAQAVMAASLRQDAQPRGLVRISVPKAVGRTVVHPHMPDFLALYPEVDVQMRLEDRYMDLIDDPVDLAIRITNHPPPGLMGRHLMDIDHLLCASPQYLARHGTPVHPLELKAHSCIYLGEEPGDAHWKLRGHGKTVTVAVRGRYAANHTGVRLDAVLQHIGIASLPRFTAREALADGRIVQVLPDWNFLPNYSGQLWILHPPTRHLPLKLRVLMDFLAERLGGVDGLQFS</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="98" xmlns="http://uniprot.org/uniprot">
    <accession>A9BWP8</accession>
    <name>A9BWP8_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="6">Pyridoxine/pyridoxamine 5'-phosphate oxidase</fullName>
            <ecNumber evidence="6">1.4.3.5</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="6">PNP/PMP oxidase</fullName>
            <shortName evidence="6">PNPOx</shortName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="6">Pyridoxal 5'-phosphate synthase</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="6" type="primary">pdxH</name>
        <name evidence="11" type="ordered locus">Daci_3944</name>
    </gene>
    <organism evidence="11 12">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="11 12" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="12">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="12" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="12">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="6">Catalyzes the oxidation of either pyridoxine 5'-phosphate (PNP) or pyridoxamine 5'-phosphate (PMP) into pyridoxal 5'-phosphate (PLP).</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="6">
            <text>H2O + O2 + pyridoxamine 5'-phosphate = H2O2 + NH4(+) + pyridoxal 5'-phosphate</text>
            <dbReference type="Rhea" id="RHEA:15817"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:15379"/>
            <dbReference type="ChEBI" id="CHEBI:16240"/>
            <dbReference type="ChEBI" id="CHEBI:28938"/>
            <dbReference type="ChEBI" id="CHEBI:58451"/>
            <dbReference type="ChEBI" id="CHEBI:597326"/>
            <dbReference type="EC" id="1.4.3.5"/>
        </reaction>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="6">
            <text>O2 + pyridoxine 5'-phosphate = H2O2 + pyridoxal 5'-phosphate</text>
            <dbReference type="Rhea" id="RHEA:15149"/>
            <dbReference type="ChEBI" id="CHEBI:15379"/>
            <dbReference type="ChEBI" id="CHEBI:16240"/>
            <dbReference type="ChEBI" id="CHEBI:58589"/>
            <dbReference type="ChEBI" id="CHEBI:597326"/>
            <dbReference type="EC" id="1.4.3.5"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="6 8">
            <name>FMN</name>
            <dbReference type="ChEBI" id="CHEBI:58210"/>
        </cofactor>
        <text evidence="6 8">Binds 1 FMN per subunit.</text>
    </comment>
    <comment type="pathway">
        <text evidence="6">Cofactor metabolism; pyridoxal 5'-phosphate salvage; pyridoxal 5'-phosphate from pyridoxamine 5'-phosphate: step 1/1.</text>
    </comment>
    <comment type="pathway">
        <text evidence="6">Cofactor metabolism; pyridoxal 5'-phosphate salvage; pyridoxal 5'-phosphate from pyridoxine 5'-phosphate: step 1/1.</text>
    </comment>
    <comment type="subunit">
        <text evidence="6">Homodimer.</text>
    </comment>
    <comment type="similarity">
        <text evidence="1 6">Belongs to the pyridoxamine 5'-phosphate oxidase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="6">Lacks conserved residue(s) required for the propagation of feature annotation.</text>
    </comment>
    <dbReference type="EC" id="1.4.3.5" evidence="6"/>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX36575.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012205769.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_3944"/>
    <dbReference type="PRIDE" id="A9BWP8"/>
    <dbReference type="EnsemblBacteria" id="ABX36575">
        <property type="protein sequence ID" value="ABX36575"/>
        <property type="gene ID" value="Daci_3944"/>
    </dbReference>
    <dbReference type="GeneID" id="60688268"/>
    <dbReference type="KEGG" id="dac:Daci_3944"/>
    <dbReference type="eggNOG" id="COG0259">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_032263_2_2_4"/>
    <dbReference type="OMA" id="PEPNAMV"/>
    <dbReference type="UniPathway" id="UPA01068">
        <property type="reaction ID" value="UER00304"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0010181">
        <property type="term" value="F:FMN binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004733">
        <property type="term" value="F:pyridoxamine-phosphate oxidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008615">
        <property type="term" value="P:pyridoxine biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.30.110.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01629">
        <property type="entry name" value="PdxH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000659">
        <property type="entry name" value="Pyridox_Oxase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019740">
        <property type="entry name" value="Pyridox_Oxase_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011576">
        <property type="entry name" value="Pyridox_Oxase_put"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019576">
        <property type="entry name" value="Pyridoxamine_oxidase_dimer_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012349">
        <property type="entry name" value="Split_barrel_FMN-bd"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10851">
        <property type="entry name" value="PTHR10851"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF10590">
        <property type="entry name" value="PNP_phzG_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01243">
        <property type="entry name" value="Putative_PNPOx"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF000190">
        <property type="entry name" value="Pyd_amn-ph_oxd"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00558">
        <property type="entry name" value="pdxH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01064">
        <property type="entry name" value="PYRIDOX_OXIDASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2 6" id="KW-0285">Flavoprotein</keyword>
    <keyword evidence="3 6 8" id="KW-0288">FMN</keyword>
    <keyword evidence="4 6 11" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="5 6" id="KW-0664">Pyridoxine biosynthesis</keyword>
    <keyword evidence="12" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Putative_PNPOx" evidence="9">
        <location>
            <begin position="38"/>
            <end position="123"/>
        </location>
    </feature>
    <feature type="domain" description="PNP_phzG_C" evidence="10">
        <location>
            <begin position="175"/>
            <end position="215"/>
        </location>
    </feature>
    <feature type="region of interest" description="Substrate binding" evidence="7">
        <location>
            <begin position="12"/>
            <end position="15"/>
        </location>
    </feature>
    <feature type="region of interest" description="Substrate binding" evidence="6 7">
        <location>
            <begin position="194"/>
            <end position="196"/>
        </location>
    </feature>
    <feature type="binding site" evidence="6 8">
        <location>
            <begin position="65"/>
            <end position="70"/>
        </location>
        <ligand>
            <name>FMN</name>
            <dbReference type="ChEBI" id="CHEBI:58210"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="6 7">
        <location>
            <position position="70"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="6 8">
        <location>
            <begin position="80"/>
            <end position="81"/>
        </location>
        <ligand>
            <name>FMN</name>
            <dbReference type="ChEBI" id="CHEBI:58210"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="6 8">
        <location>
            <position position="86"/>
        </location>
        <ligand>
            <name>FMN</name>
            <dbReference type="ChEBI" id="CHEBI:58210"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="6 8">
        <location>
            <position position="87"/>
        </location>
        <ligand>
            <name>FMN</name>
            <dbReference type="ChEBI" id="CHEBI:58210"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="6 7">
        <location>
            <position position="127"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="6 7">
        <location>
            <position position="131"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="6 7">
        <location>
            <position position="135"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="6 8">
        <location>
            <begin position="144"/>
            <end position="145"/>
        </location>
        <ligand>
            <name>FMN</name>
            <dbReference type="ChEBI" id="CHEBI:58210"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="6 8">
        <location>
            <position position="188"/>
        </location>
        <ligand>
            <name>FMN</name>
            <dbReference type="ChEBI" id="CHEBI:58210"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="6 8">
        <location>
            <position position="198"/>
        </location>
        <ligand>
            <name>FMN</name>
            <dbReference type="ChEBI" id="CHEBI:58210"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00007301"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022630"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022643"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023002"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023096"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01629"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="PIRSR" id="PIRSR000190-1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="PIRSR" id="PIRSR000190-2"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="9">
        <source>
            <dbReference type="Pfam" id="PF01243"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="10">
        <source>
            <dbReference type="Pfam" id="PF10590"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="EMBL" id="ABX36575.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="215" mass="24372" checksum="57FBDEB9C9DB5231" modified="2008-01-15" version="1">MSSISTSIADLRKSYERAELSESASLADPLQQFDQWLQEALSAQVPEPNAMTLATVGGDLRPSTRIVLIKGYDERGLVWYTNYDSRKGQQLAGNPFAALQFHWVELERVVRIEGRVEKVSDAESDAYFNSRPLDSRIGAWASPQSQVISGRSVLVANAAKYGAQFLLNPPRPPHWGGFRLVPERWEFWQGRKSRLHDRLCYQLEAGTWLRQRLAP</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="77" xmlns="http://uniprot.org/uniprot">
    <accession>A9BWR6</accession>
    <name>A9BWR6_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="5">Ribonuclease VapC</fullName>
            <shortName evidence="5">RNase VapC</shortName>
            <ecNumber evidence="5">3.1.-.-</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="5">Toxin VapC</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="5" type="primary">vapC</name>
        <name evidence="7" type="ordered locus">Daci_3962</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="8" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="5">Toxic component of a toxin-antitoxin (TA) system. An RNase.</text>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="5">
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </cofactor>
    </comment>
    <comment type="similarity">
        <text evidence="5">Belongs to the PINc/VapC protein family.</text>
    </comment>
    <dbReference type="EC" id="3.1.-.-" evidence="5"/>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX36593.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012205787.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_3962"/>
    <dbReference type="PRIDE" id="A9BWR6"/>
    <dbReference type="EnsemblBacteria" id="ABX36593">
        <property type="protein sequence ID" value="ABX36593"/>
        <property type="gene ID" value="Daci_3962"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_3962"/>
    <dbReference type="eggNOG" id="COG1487">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_118482_8_0_4"/>
    <dbReference type="OMA" id="VWARLMA"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000287">
        <property type="term" value="F:magnesium ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004540">
        <property type="term" value="F:ribonuclease activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0090729">
        <property type="term" value="F:toxin activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00265">
        <property type="entry name" value="VapC_Nob1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029060">
        <property type="entry name" value="PIN-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002716">
        <property type="entry name" value="PIN_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR022907">
        <property type="entry name" value="VapC_family"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01850">
        <property type="entry name" value="PIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF88723">
        <property type="entry name" value="SSF88723"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4 5" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="5" id="KW-0460">Magnesium</keyword>
    <keyword evidence="3 5" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="2 5" id="KW-0540">Nuclease</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="5" id="KW-0800">Toxin</keyword>
    <keyword evidence="1 5" id="KW-1277">Toxin-antitoxin system</keyword>
    <feature type="domain" description="PINc" evidence="6">
        <location>
            <begin position="2"/>
            <end position="118"/>
        </location>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <position position="5"/>
        </location>
        <ligand>
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <position position="99"/>
        </location>
        <ligand>
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022649"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022722"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00265"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="Pfam" id="PF01850"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="ABX36593.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="137" mass="15603" checksum="6F4F716442816453" modified="2008-01-15" version="1">MYLLDTNIISELRRPRPHGAVLAWLQSLPEPELHLSAVSLGEIQAGIELTRQQDAEKAQEIERWADLVSASYNVLPMDAETFRIWARLMHGRSEALYEDAMIAATAMRHRLVVATRNIRDFTDFGVALVNPFESPFR</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="95" xmlns="http://uniprot.org/uniprot">
    <accession>A9BWV4</accession>
    <name>A9BWV4_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="4">N-acetyl-gamma-glutamyl-phosphate reductase</fullName>
            <shortName evidence="4">AGPR</shortName>
            <ecNumber evidence="4">1.2.1.38</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="4">N-acetyl-glutamate semialdehyde dehydrogenase</fullName>
            <shortName evidence="4">NAGSA dehydrogenase</shortName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="4" type="primary">argC</name>
        <name evidence="7" type="ordered locus">Daci_4308</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="8" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="4">Catalyzes the NADPH-dependent reduction of N-acetyl-5-glutamyl phosphate to yield N-acetyl-L-glutamate 5-semialdehyde.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="4">
            <text>N-acetyl-L-glutamate 5-semialdehyde + NADP(+) + phosphate = H(+) + N-acetyl-L-glutamyl 5-phosphate + NADPH</text>
            <dbReference type="Rhea" id="RHEA:21588"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:29123"/>
            <dbReference type="ChEBI" id="CHEBI:43474"/>
            <dbReference type="ChEBI" id="CHEBI:57783"/>
            <dbReference type="ChEBI" id="CHEBI:57936"/>
            <dbReference type="ChEBI" id="CHEBI:58349"/>
            <dbReference type="EC" id="1.2.1.38"/>
        </reaction>
    </comment>
    <comment type="pathway">
        <text evidence="4">Amino-acid biosynthesis; L-arginine biosynthesis; N(2)-acetyl-L-ornithine from L-glutamate: step 3/4.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="4">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="4">Belongs to the NAGSA dehydrogenase family. Type 2 subfamily.</text>
    </comment>
    <dbReference type="EC" id="1.2.1.38" evidence="4"/>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX36939.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012206111.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_4308"/>
    <dbReference type="PRIDE" id="A9BWV4"/>
    <dbReference type="EnsemblBacteria" id="ABX36939">
        <property type="protein sequence ID" value="ABX36939"/>
        <property type="gene ID" value="Daci_4308"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_4308"/>
    <dbReference type="eggNOG" id="COG0002">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_077118_0_0_4"/>
    <dbReference type="OMA" id="GTHHPTR"/>
    <dbReference type="UniPathway" id="UPA00068">
        <property type="reaction ID" value="UER00108"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003942">
        <property type="term" value="F:N-acetyl-gamma-glutamyl-phosphate reductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051287">
        <property type="term" value="F:NAD binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006526">
        <property type="term" value="P:arginine biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01110">
        <property type="entry name" value="ArgC_type2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023013">
        <property type="entry name" value="AGPR_AS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010136">
        <property type="entry name" value="AGPR_type-2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036291">
        <property type="entry name" value="NAD(P)-bd_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000534">
        <property type="entry name" value="Semialdehyde_DH_NAD-bd"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01118">
        <property type="entry name" value="Semialdhyde_dh"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00859">
        <property type="entry name" value="Semialdhyde_dh"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51735">
        <property type="entry name" value="SSF51735"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01851">
        <property type="entry name" value="argC_other"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01224">
        <property type="entry name" value="ARGC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="1 4" id="KW-0028">Amino-acid biosynthesis</keyword>
    <keyword evidence="4" id="KW-0055">Arginine biosynthesis</keyword>
    <keyword evidence="4" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="2 4" id="KW-0521">NADP</keyword>
    <keyword evidence="3 4 7" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Semialdhyde_dh" evidence="6">
        <location>
            <begin position="4"/>
            <end position="105"/>
        </location>
    </feature>
    <feature type="active site" evidence="4 5">
        <location>
            <position position="116"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022605"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022857"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023002"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01110"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU10010"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="SMART" id="SM00859"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="ABX36939.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="324" mass="34697" checksum="F0283A01E8C86EDC" modified="2008-01-15" version="1">MTSLVFIDGDQGTTGLQVREWLADRTDLRLLQLPADQRKSTAHRAEALNDCDIALLCLPDEAAREAVALVRRPGVRVIDASSAHRTAPGWVYGLPELEAGQAERIAHARRVSNPGCYPTGALALLRPLIDAGLLPPDYPLAIHAVSGYSGRGRAGLLDHEGAAAATAVPLQVYGLGLHHKHVPEIQQHAGLAHAPVFVPAYGHYRQGIVLTIALHLRLLPAGVTARSLHAALQARYQGQPCIELQPLEEDADAQRLDPRALNGSNRMRLAVFGQPQEQQVLLTAVFDNLGKGAAGAAVQNLDLMLGLQPMLHGSTNPSRIPLPL</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="75" xmlns="http://uniprot.org/uniprot">
    <accession>A9BWZ9</accession>
    <name>A9BWZ9_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Amidase, hydantoinase/carbamoylase family</fullName>
            <ecNumber evidence="4">3.5.1.87</ecNumber>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ordered locus">Daci_4353</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="5" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="2">
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </cofactor>
        <text evidence="2">Binds 2 Zn(2+) ions per subunit.</text>
    </comment>
    <comment type="similarity">
        <text evidence="1">Belongs to the peptidase M20 family.</text>
    </comment>
    <dbReference type="EC" id="3.5.1.87" evidence="4"/>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX36984.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012206156.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_4353"/>
    <dbReference type="PRIDE" id="A9BWZ9"/>
    <dbReference type="EnsemblBacteria" id="ABX36984">
        <property type="protein sequence ID" value="ABX36984"/>
        <property type="gene ID" value="Daci_4353"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_4353"/>
    <dbReference type="eggNOG" id="COG0624">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_024588_6_1_4"/>
    <dbReference type="OMA" id="VGEFRIE"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016813">
        <property type="term" value="F:hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amidines"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0050538">
        <property type="term" value="F:N-carbamoyl-L-amino-acid hydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010158">
        <property type="entry name" value="Amidase_Cbmase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036264">
        <property type="entry name" value="Bact_exopeptidase_dim_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002933">
        <property type="entry name" value="Peptidase_M20"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR32494">
        <property type="entry name" value="PTHR32494"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01546">
        <property type="entry name" value="Peptidase_M20"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF001235">
        <property type="entry name" value="Amidase_carbamoylase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55031">
        <property type="entry name" value="SSF55031"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01879">
        <property type="entry name" value="hydantase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="2" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0862">Zinc</keyword>
    <feature type="binding site" evidence="2">
        <location>
            <position position="93"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
            <label>1</label>
        </ligand>
    </feature>
    <feature type="binding site" evidence="2">
        <location>
            <position position="104"/>
        </location>
    </feature>
    <feature type="binding site" evidence="2">
        <location>
            <position position="139"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
            <label>2</label>
        </ligand>
    </feature>
    <feature type="binding site" evidence="2">
        <location>
            <position position="203"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
            <label>1</label>
        </ligand>
    </feature>
    <feature type="binding site" evidence="3">
        <location>
            <position position="228"/>
        </location>
        <ligand>
            <name>allantoate</name>
            <dbReference type="ChEBI" id="CHEBI:17536"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="3">
        <location>
            <position position="291"/>
        </location>
        <ligand>
            <name>allantoate</name>
            <dbReference type="ChEBI" id="CHEBI:17536"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="3">
        <location>
            <position position="304"/>
        </location>
        <ligand>
            <name>allantoate</name>
            <dbReference type="ChEBI" id="CHEBI:17536"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="2">
        <location>
            <position position="398"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
            <label>2</label>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00006153"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="PIRSR" id="PIRSR001235-1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="PIRSR" id="PIRSR001235-2"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="ABX36984.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="430" mass="46062" checksum="FB5C5500C9355BC7" modified="2008-01-15" version="1">MTALPASSAPNLPPINAERLWRRVETLSTFTLPDVPWTRRAFSPEFDQARAWLRGQFEAAGMQVHLDEGGNLMGRLPAAPGPVQRAPISTGSHCDTVMMGGRFDGIIGVLAGIEVAHCLHENGIALQHPFEVIDFLSEEPSDYGISCIGSRALSGKLDAAMLAARNPEGETLAEGMRRIGARPEALDRPLRSAGGTAAFVELHIEQGPVLERRGLPIGVVTNIVGIRRVSFTVRGQADHAGTTPMDIRQDALVGAARIVDAANRKAAALSGQPHYVVATVGRLSLTPNASNAVPGLVEMMMEVRSDHAGVLERFPEELLAEVLPGLAALRVRAEMSDVSRSRPTDCAGLVMQGVEQACANLGYAHMRMPSGAGHDAVYMAPTGPMGMIFIPCLHGRSHAPEEWIEPAQLLDGTRVLYETVRVLDRQLAQG</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="96" xmlns="http://uniprot.org/uniprot">
    <accession>A9BX77</accession>
    <name>A9BX77_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="4">Histidinol dehydrogenase</fullName>
            <shortName evidence="4">HDH</shortName>
            <ecNumber evidence="4">1.1.1.23</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="4" type="primary">hisD</name>
        <name evidence="11" type="ordered locus">Daci_5524</name>
    </gene>
    <organism evidence="11 12">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="11 12" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="12">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="12" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="12">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="4">Catalyzes the sequential NAD-dependent oxidations of L-histidinol to L-histidinaldehyde and then to L-histidine.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="4">
            <text>H2O + L-histidinol + 2 NAD(+) = 3 H(+) + L-histidine + 2 NADH</text>
            <dbReference type="Rhea" id="RHEA:20641"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:57540"/>
            <dbReference type="ChEBI" id="CHEBI:57595"/>
            <dbReference type="ChEBI" id="CHEBI:57699"/>
            <dbReference type="ChEBI" id="CHEBI:57945"/>
            <dbReference type="EC" id="1.1.1.23"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="4 9">
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </cofactor>
        <text evidence="4 9">Binds 1 zinc ion per subunit.</text>
    </comment>
    <comment type="pathway">
        <text evidence="4">Amino-acid biosynthesis; L-histidine biosynthesis; L-histidine from 5-phospho-alpha-D-ribose 1-diphosphate: step 9/9.</text>
    </comment>
    <comment type="similarity">
        <text evidence="4 5 10">Belongs to the histidinol dehydrogenase family.</text>
    </comment>
    <dbReference type="EC" id="1.1.1.23" evidence="4"/>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX38153.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012207322.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_5524"/>
    <dbReference type="PRIDE" id="A9BX77"/>
    <dbReference type="EnsemblBacteria" id="ABX38153">
        <property type="protein sequence ID" value="ABX38153"/>
        <property type="gene ID" value="Daci_5524"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_5524"/>
    <dbReference type="eggNOG" id="COG0141">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_006732_3_3_4"/>
    <dbReference type="OMA" id="MVTGPGN"/>
    <dbReference type="UniPathway" id="UPA00031">
        <property type="reaction ID" value="UER00014"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004399">
        <property type="term" value="F:histidinol dehydrogenase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051287">
        <property type="term" value="F:NAD binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008270">
        <property type="term" value="F:zinc ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000105">
        <property type="term" value="P:histidine biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd06572">
        <property type="entry name" value="Histidinol_dh"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01024">
        <property type="entry name" value="HisD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016161">
        <property type="entry name" value="Ald_DH/histidinol_DH"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001692">
        <property type="entry name" value="Histidinol_DH_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR022695">
        <property type="entry name" value="Histidinol_DH_monofunct"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012131">
        <property type="entry name" value="Hstdl_DH"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR21256">
        <property type="entry name" value="PTHR21256"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00815">
        <property type="entry name" value="Histidinol_dh"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF000099">
        <property type="entry name" value="Histidinol_dh"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00083">
        <property type="entry name" value="HOLDHDRGNASE"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53720">
        <property type="entry name" value="SSF53720"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00069">
        <property type="entry name" value="hisD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00611">
        <property type="entry name" value="HISOL_DEHYDROGENASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-0028">Amino-acid biosynthesis</keyword>
    <keyword evidence="4" id="KW-0368">Histidine biosynthesis</keyword>
    <keyword evidence="1 4 9" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="4 7" id="KW-0520">NAD</keyword>
    <keyword evidence="3 4 5" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="12" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 4 9" id="KW-0862">Zinc</keyword>
    <feature type="active site" description="Proton acceptor" evidence="4 6">
        <location>
            <position position="336"/>
        </location>
    </feature>
    <feature type="active site" description="Proton acceptor" evidence="4 6">
        <location>
            <position position="337"/>
        </location>
    </feature>
    <feature type="binding site" evidence="4 7">
        <location>
            <position position="139"/>
        </location>
        <ligand>
            <name>NAD(+)</name>
            <dbReference type="ChEBI" id="CHEBI:57540"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="4 7">
        <location>
            <position position="200"/>
        </location>
        <ligand>
            <name>NAD(+)</name>
            <dbReference type="ChEBI" id="CHEBI:57540"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="4 7">
        <location>
            <position position="223"/>
        </location>
        <ligand>
            <name>NAD(+)</name>
            <dbReference type="ChEBI" id="CHEBI:57540"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="4 8">
        <location>
            <position position="246"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="4 8 9">
        <location>
            <position position="268"/>
        </location>
    </feature>
    <feature type="binding site" evidence="4 8 9">
        <location>
            <position position="271"/>
        </location>
    </feature>
    <feature type="binding site" evidence="4 8">
        <location>
            <position position="337"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="4 8 9">
        <location>
            <position position="370"/>
        </location>
    </feature>
    <feature type="binding site" evidence="4 8">
        <location>
            <position position="424"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="4 8 9">
        <location>
            <position position="429"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022833"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023002"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01024"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="PIRNR" id="PIRNR000099"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="PIRSR" id="PIRSR000099-1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="PIRSR" id="PIRSR000099-2"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="PIRSR" id="PIRSR000099-3"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="PIRSR" id="PIRSR000099-4"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="RuleBase" id="RU004175"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="EMBL" id="ABX38153.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="438" mass="46753" checksum="36D114BB8483D550" modified="2008-01-15" version="1">MEYVAAPARLSTADANFEHDFAQRLHWSADTDAAIEQRVADILADVQKRGDAAVLEYTARFDGLQVDGMAALELTQAELKAAFNSLGDEQRDALTAAAQRVRTYHEAQKRASGESWSYRDADGTLLGQKVTPLDRVGIYVPGGKAAYPSSVLMNAIPAHVAGVQEIIMVVPTPRGEKNALVLAAAYVAGVTRGFTIGGAQAVAALAYGTATIPKVDKITGPGNAYVASAKKRVFGTVGIDMIAGPSEILVLADGSTPPDWVAMDLFSQAEHDELAQSILLCPDADYIAAVQREIDRLLPEMPRRAIIAKSLSDRGALILTRDMQEACAISNRIAPEHLEVSSNDPHQWEPLLRHAGAIFLGAYTSESLGDYCAGPNHVLPTSGTARFSSPLGVYDFQKRSSLIEVSEQGAQTLGRIASVLAHGEGLQGHARAAEMRLK</sequence>
</entry>
<entry dataset="Swiss-Prot" created="2009-03-24" modified="2022-08-03" version="85" xmlns="http://uniprot.org/uniprot">
    <accession>A9BX80</accession>
    <name>MURA_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">UDP-N-acetylglucosamine 1-carboxyvinyltransferase</fullName>
            <ecNumber evidence="1">2.5.1.7</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="1">Enoylpyruvate transferase</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="1">UDP-N-acetylglucosamine enolpyruvyl transferase</fullName>
            <shortName evidence="1">EPT</shortName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="1" type="primary">murA</name>
        <name type="ordered locus">Daci_5527</name>
    </gene>
    <organism>
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference key="1">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain>DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="1">Cell wall formation. Adds enolpyruvyl to UDP-N-acetylglucosamine.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>phosphoenolpyruvate + UDP-N-acetyl-alpha-D-glucosamine = phosphate + UDP-N-acetyl-3-O-(1-carboxyvinyl)-alpha-D-glucosamine</text>
            <dbReference type="Rhea" id="RHEA:18681"/>
            <dbReference type="ChEBI" id="CHEBI:43474"/>
            <dbReference type="ChEBI" id="CHEBI:57705"/>
            <dbReference type="ChEBI" id="CHEBI:58702"/>
            <dbReference type="ChEBI" id="CHEBI:68483"/>
            <dbReference type="EC" id="2.5.1.7"/>
        </reaction>
    </comment>
    <comment type="pathway">
        <text evidence="1">Cell wall biogenesis; peptidoglycan biosynthesis.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="1">Belongs to the EPSP synthase family. MurA subfamily.</text>
    </comment>
    <dbReference type="EC" id="2.5.1.7" evidence="1"/>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX38156.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012207325.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A9BX80"/>
    <dbReference type="SMR" id="A9BX80"/>
    <dbReference type="STRING" id="398578.Daci_5527"/>
    <dbReference type="PRIDE" id="A9BX80"/>
    <dbReference type="EnsemblBacteria" id="ABX38156">
        <property type="protein sequence ID" value="ABX38156"/>
        <property type="gene ID" value="Daci_5527"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_5527"/>
    <dbReference type="eggNOG" id="COG0766">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_027387_0_0_4"/>
    <dbReference type="OMA" id="CDPHRAT"/>
    <dbReference type="UniPathway" id="UPA00219"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008760">
        <property type="term" value="F:UDP-N-acetylglucosamine 1-carboxyvinyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0007049">
        <property type="term" value="P:cell cycle"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051301">
        <property type="term" value="P:cell division"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0071555">
        <property type="term" value="P:cell wall organization"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009252">
        <property type="term" value="P:peptidoglycan biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008360">
        <property type="term" value="P:regulation of cell shape"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0019277">
        <property type="term" value="P:UDP-N-acetylgalactosamine biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd01555">
        <property type="entry name" value="UdpNAET"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.65.10.10">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00111">
        <property type="entry name" value="MurA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001986">
        <property type="entry name" value="Enolpyruvate_Tfrase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036968">
        <property type="entry name" value="Enolpyruvate_Tfrase_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013792">
        <property type="entry name" value="RNA3'P_cycl/enolpyr_Trfase_a/b"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005750">
        <property type="entry name" value="UDP_GlcNAc_COvinyl_MurA"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00275">
        <property type="entry name" value="EPSP_synthase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55205">
        <property type="entry name" value="SSF55205"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01072">
        <property type="entry name" value="murA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword id="KW-0131">Cell cycle</keyword>
    <keyword id="KW-0132">Cell division</keyword>
    <keyword id="KW-0133">Cell shape</keyword>
    <keyword id="KW-0961">Cell wall biogenesis/degradation</keyword>
    <keyword id="KW-0963">Cytoplasm</keyword>
    <keyword id="KW-0573">Peptidoglycan synthesis</keyword>
    <keyword id="KW-0670">Pyruvate</keyword>
    <keyword id="KW-1185">Reference proteome</keyword>
    <keyword id="KW-0808">Transferase</keyword>
    <feature type="chain" id="PRO_1000094686" description="UDP-N-acetylglucosamine 1-carboxyvinyltransferase">
        <location>
            <begin position="1"/>
            <end position="422"/>
        </location>
    </feature>
    <feature type="active site" description="Proton donor" evidence="1">
        <location>
            <position position="117"/>
        </location>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <begin position="22"/>
            <end position="23"/>
        </location>
        <ligand>
            <name>phosphoenolpyruvate</name>
            <dbReference type="ChEBI" id="CHEBI:58702"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <position position="93"/>
        </location>
        <ligand>
            <name>UDP-N-acetyl-alpha-D-glucosamine</name>
            <dbReference type="ChEBI" id="CHEBI:57705"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <begin position="122"/>
            <end position="126"/>
        </location>
        <ligand>
            <name>UDP-N-acetyl-alpha-D-glucosamine</name>
            <dbReference type="ChEBI" id="CHEBI:57705"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <position position="309"/>
        </location>
        <ligand>
            <name>UDP-N-acetyl-alpha-D-glucosamine</name>
            <dbReference type="ChEBI" id="CHEBI:57705"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <position position="331"/>
        </location>
        <ligand>
            <name>UDP-N-acetyl-alpha-D-glucosamine</name>
            <dbReference type="ChEBI" id="CHEBI:57705"/>
        </ligand>
    </feature>
    <feature type="modified residue" description="2-(S-cysteinyl)pyruvic acid O-phosphothioketal" evidence="1">
        <location>
            <position position="117"/>
        </location>
    </feature>
    <evidence type="ECO:0000255" key="1">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00111"/>
        </source>
    </evidence>
    <sequence length="422" mass="44636" checksum="C9E1807E0DB840E7" modified="2008-01-15" version="1">MDKLLIRGGRALHGEVTVSGAKNAALPELCAALLSSEPVTLRNVPRLQDVATMLKLIRNMGVSAEHDDSGTVRINAGSLSNPEAPYELVKTMRASVLALGPLLARFGQARVSLPGGCAIGSRPVDQHIKGLQAMGAEIVVENGYMNACLPGHLKRLQGARITTDMVTVTGTENFLMAAVLAEGETVLENAAMEPEIGDLAEMLIKMGARIEGHGTGRIVIQGVERLGGCEHQVVADRIEAGTFLCAVAATGGNALLRNGRADHLGAVIDKLKDAGAEVSAEDGGIRVRAAGKLKAQSFRTTEYPGFPTDMQAQFMALNLVAEGCSMVTETIFENRFMHVDEMLRLGAQITTDGRVATITGSQSLSGAAVMATDLRASASLVIAGLVAKGETLVDRIYHLDRGYDRMEDKLRGLGADIERVSQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-05-25" version="63" xmlns="http://uniprot.org/uniprot">
    <accession>A9BXH3</accession>
    <name>A9BXH3_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="7">Cytochrome c, mono-and diheme variant-like protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ordered locus">Daci_5620</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="8" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX38249.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012207418.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_5620"/>
    <dbReference type="EnsemblBacteria" id="ABX38249">
        <property type="protein sequence ID" value="ABX38249"/>
        <property type="gene ID" value="Daci_5620"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_5620"/>
    <dbReference type="eggNOG" id="COG2010">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_043372_0_0_4"/>
    <dbReference type="OMA" id="EHGASTM"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009055">
        <property type="term" value="F:electron transfer activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0020037">
        <property type="term" value="F:heme binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.760.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009056">
        <property type="entry name" value="Cyt_c-like_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036909">
        <property type="entry name" value="Cyt_c-like_dom_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13442">
        <property type="entry name" value="Cytochrome_CBB3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46626">
        <property type="entry name" value="SSF46626"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51007">
        <property type="entry name" value="CYTC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1 4" id="KW-0349">Heme</keyword>
    <keyword evidence="3 4" id="KW-0408">Iron</keyword>
    <keyword evidence="5" id="KW-0472">Membrane</keyword>
    <keyword evidence="2 4" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="5" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="5" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="64"/>
            <end position="88"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="95"/>
            <end position="112"/>
        </location>
    </feature>
    <feature type="domain" description="Cytochrome c" evidence="6">
        <location>
            <begin position="136"/>
            <end position="229"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022617"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023004"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00433"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="PROSITE" id="PS51007"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="ABX38249.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="398" mass="42241" checksum="60EEBD13F8D27B58" modified="2008-01-15" version="1">MQRSDSPDWLNPLIGAMQQAQVGLLQLLHGLGLAGTVDGQPAWPWALRLSGENLLIDLGQARGLLWSLAAVATAIVLLVLALVLVLVLRRIRLPALVLTALAALALLLAPWPRADLILVPAHATSFHASPTGFSVESIARGGATYAQHCTACHGADGRGHGPLAASQPVWPPNFTSPLLWRRADGELLWAILHDRRPVESGDGARAHGQADRLSSDDAWALIDFMKARAAGQMLQIAGSWPYPVGLPDMAVQCAGQPARRLSTWQSRQQRLRVVAGSGPVQEDPRLVSLQLSPDGGNRAASALDCTVNDPRAWQAMALLSGSEQLQGMQWLGDRSGWLRALSRPGAQGWSEDDLVCRTDTAAKATSGVGAGALADGLGALIARMDAEPVRFIKGGFVH</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="67" xmlns="http://uniprot.org/uniprot">
    <accession>A9BXQ4</accession>
    <name>A9BXQ4_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Glutathione S-transferase domain</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Daci_5702</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="4" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the GST superfamily.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX38330.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012207499.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_5702"/>
    <dbReference type="PRIDE" id="A9BXQ4"/>
    <dbReference type="EnsemblBacteria" id="ABX38330">
        <property type="protein sequence ID" value="ABX38330"/>
        <property type="gene ID" value="Daci_5702"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_5702"/>
    <dbReference type="eggNOG" id="COG0625">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_011226_6_4_4"/>
    <dbReference type="OMA" id="PMSRGRI"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016740">
        <property type="term" value="F:transferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006749">
        <property type="term" value="P:glutathione metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036282">
        <property type="entry name" value="Glutathione-S-Trfase_C_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR040079">
        <property type="entry name" value="Glutathione_S-Trfase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004045">
        <property type="entry name" value="Glutathione_S-Trfase_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004046">
        <property type="entry name" value="GST_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036249">
        <property type="entry name" value="Thioredoxin-like_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00043">
        <property type="entry name" value="GST_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02798">
        <property type="entry name" value="GST_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SFLD" id="SFLDS00019">
        <property type="entry name" value="Glutathione_Transferase_(cytos"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47616">
        <property type="entry name" value="SSF47616"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52833">
        <property type="entry name" value="SSF52833"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50404">
        <property type="entry name" value="GST_NTER"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="GST N-terminal" evidence="2">
        <location>
            <begin position="5"/>
            <end position="85"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="RuleBase" id="RU003494"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS50404"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ABX38330.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="214" mass="23907" checksum="DEFD942DC0C42B3E" modified="2008-01-15" version="1">MNDSIKPLRFYFHPRSRAVITRWMLEECGARYEPVRLEFGSTMKSADYLAINPMGKVPALVHGNTAITELAAILAYLADIFPERRLAPAVDSPLRGSYHRWMFFLAGPVEAVMTAKSQGHLEQQTADQAMSAGYGRYDDVVQTLRQAVAGRRYLCGDQFTAADVLMASYLRWGTMMKLLPALPEFSDYGQPLMERPASLRSIQLNEADLAAQPA</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="55" xmlns="http://uniprot.org/uniprot">
    <accession>A9BXT4</accession>
    <name>A9BXT4_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Extracellular ligand-binding receptor</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ordered locus">Daci_5732</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="5" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the leucine-binding protein family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX38360.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_5732"/>
    <dbReference type="PRIDE" id="A9BXT4"/>
    <dbReference type="EnsemblBacteria" id="ABX38360">
        <property type="protein sequence ID" value="ABX38360"/>
        <property type="gene ID" value="Daci_5732"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_5732"/>
    <dbReference type="eggNOG" id="COG0683">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_027128_7_1_4"/>
    <dbReference type="OMA" id="SCHGNDG"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006865">
        <property type="term" value="P:amino acid transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR028081">
        <property type="entry name" value="Leu-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000709">
        <property type="entry name" value="Leu_Ile_Val-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR028082">
        <property type="entry name" value="Peripla_BP_I"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13458">
        <property type="entry name" value="Peripla_BP_6"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00337">
        <property type="entry name" value="LEUILEVALBP"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53822">
        <property type="entry name" value="SSF53822"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2" id="KW-0029">Amino-acid transport</keyword>
    <keyword evidence="4" id="KW-0675">Receptor</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0813">Transport</keyword>
    <feature type="domain" description="Peripla_BP_6" evidence="3">
        <location>
            <begin position="56"/>
            <end position="373"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00010062"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022970"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF13458"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="ABX38360.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="403" mass="42194" checksum="8ADE29167EE9B0D2" modified="2008-01-15" version="1">MAPSCSHPFCPSSESMQRRQLVSLLPRAASIAAVPALAPAFVRNAFADEAGLSAKTITIGCSAAMSGPLAGFGTDIKLGTEAAMAQINARGGIQGRTLQLQMVDDGYVPQRTADNVRQMLSKGTAFALLSCVGTPNNAAVIPLIEEAGVPYVAPFTGASSLRKASRNVFHVRASYTTEVRRLVQRLAGMGLKGIGIVYLDNAYGREMLEDATHALEAEKMAPAVQAAIATDGKNLADVLNKVEAAHPSAVLLATAGTVSVDLVRGLRKSAPGVLLTGLSVTLPNDSLKPLGEDARGIALTMVVPAPHQAKLQVVRDYQAAMRAHGQQEFSLGTLEAYVNTRVLAEGLERAGRDPSQARLRSALAGIRNWDMGGFVIDYSGQAPHVGSSFIDLGVLGNAGRFIG</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="74" xmlns="http://uniprot.org/uniprot">
    <accession>A9BXT6</accession>
    <name>A9BXT6_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="6">Aromatic amino acid beta-eliminating lyase/threonine aldolase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ordered locus">Daci_5734</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="7" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>pyridoxal 5'-phosphate</name>
            <dbReference type="ChEBI" id="CHEBI:597326"/>
        </cofactor>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the threonine aldolase family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX38362.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012207531.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_5734"/>
    <dbReference type="PRIDE" id="A9BXT6"/>
    <dbReference type="EnsemblBacteria" id="ABX38362">
        <property type="protein sequence ID" value="ABX38362"/>
        <property type="gene ID" value="Daci_5734"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_5734"/>
    <dbReference type="eggNOG" id="COG2008">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_029381_0_1_4"/>
    <dbReference type="OMA" id="ENTHNVC"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016829">
        <property type="term" value="F:lyase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006520">
        <property type="term" value="P:cellular amino acid metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.640.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.1150.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001597">
        <property type="entry name" value="ArAA_b-elim_lyase/Thr_aldolase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023603">
        <property type="entry name" value="Low_specificity_L-TA"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015424">
        <property type="entry name" value="PyrdxlP-dep_Trfase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015421">
        <property type="entry name" value="PyrdxlP-dep_Trfase_major"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015422">
        <property type="entry name" value="PyrdxlP-dep_Trfase_small"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR48097:SF9">
        <property type="entry name" value="PTHR48097:SF9"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01212">
        <property type="entry name" value="Beta_elim_lyase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF017617">
        <property type="entry name" value="Thr_aldolase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53383">
        <property type="entry name" value="SSF53383"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="6" id="KW-0456">Lyase</keyword>
    <keyword evidence="3" id="KW-0663">Pyridoxal phosphate</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Beta_elim_lyase" evidence="5">
        <location>
            <begin position="12"/>
            <end position="293"/>
        </location>
    </feature>
    <feature type="modified residue" description="N6-(pyridoxal phosphate)lysine" evidence="4">
        <location>
            <position position="207"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001933"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00006966"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022898"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="PIRSR" id="PIRSR017617-1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="Pfam" id="PF01212"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="ABX38362.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="351" mass="36547" checksum="DA8037CA4A8DCCBC" modified="2008-01-15" version="1">MPSLHHHHDAVDLRSDTVTRPTPQMLEAMACAPLGDDGLDGDPTVRALEETVAQRFGKAAGLFVASGTMGNLVAVLAHGRMPGEVLAEAGSHLLNAERAAAGLTGMHYRSLPGDGGLIALPALEAALDTSASARCPSALVAVENTHNARGGSVAAPDSLAALHALAARHGVPVHTDGARLFNAAVALGLSCREIAAHTDSVTVCLSKGLSAPVGSVLMGPADFITRARGIRRMLGGTMRQAGVIAAAGLVALEHMVDRLAEDHARARRLHQGLRAIHPAWCAAELPQTNIVQVRVGTSAAEARLWEARLAEAGVLVRTGSAGLLRLVTHRHIDDKAVDSTLQAFTRLHHDN</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="63" xmlns="http://uniprot.org/uniprot">
    <accession>A9BY00</accession>
    <name>A9BY00_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Phospholipid/glycerol acyltransferase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Daci_1291</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="4" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX33935.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012203221.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_1291"/>
    <dbReference type="PRIDE" id="A9BY00"/>
    <dbReference type="EnsemblBacteria" id="ABX33935">
        <property type="protein sequence ID" value="ABX33935"/>
        <property type="gene ID" value="Daci_1291"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_1291"/>
    <dbReference type="eggNOG" id="COG0204">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_027938_5_0_4"/>
    <dbReference type="OMA" id="MPRPLCY"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016746">
        <property type="term" value="F:acyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002123">
        <property type="entry name" value="Plipid/glycerol_acylTrfase"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01553">
        <property type="entry name" value="Acyltransferase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00563">
        <property type="entry name" value="PlsC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-0012">Acyltransferase</keyword>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0808">Transferase</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="6"/>
            <end position="26"/>
        </location>
    </feature>
    <feature type="domain" description="PlsC" evidence="2">
        <location>
            <begin position="76"/>
            <end position="191"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="SMART" id="SM00563"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ABX33935.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="246" mass="27768" checksum="FE995096365465E0" modified="2008-01-15" version="1">MSLIRSTLHMLWMGITVIPYTLAVLLTRWLGGGPRRVYAVARAWLKLSVDSARVIMGVRHRVQGMENLPTDPKQGVVLLVKHQSTYETFLMPAIMPRPLAYVFKKELLMVPFFGWSIGSMDMIHIDRKHGSRAFHKVVEQGKRLLGQGTWVIMFPEGTRIPRGERGEYKTGATRLAIMTGVPVVPIAVTSAKCWPRKAFIKTPGVVDVSIGKPIPSVGRKHEELMVEVENWIEAEMQRLDPEAYRA</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2021-06-02" version="55" xmlns="http://uniprot.org/uniprot">
    <accession>A9BY53</accession>
    <name>A9BY53_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Thioesterase superfamily protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_1344</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX33988.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012203274.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_1344"/>
    <dbReference type="EnsemblBacteria" id="ABX33988">
        <property type="protein sequence ID" value="ABX33988"/>
        <property type="gene ID" value="Daci_1344"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_1344"/>
    <dbReference type="eggNOG" id="COG2050">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_089876_7_2_4"/>
    <dbReference type="OMA" id="RMGTIDM"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029069">
        <property type="entry name" value="HotDog_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003736">
        <property type="entry name" value="PAAI_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006683">
        <property type="entry name" value="Thioestr_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03061">
        <property type="entry name" value="4HBT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54637">
        <property type="entry name" value="SSF54637"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00369">
        <property type="entry name" value="unchar_dom_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="4HBT" evidence="1">
        <location>
            <begin position="69"/>
            <end position="154"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF03061"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX33988.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="166" mass="18091" checksum="ED84E5F3BA2A8BE8" modified="2008-01-15" version="1">MLKSTKASEASEAPVQFEPEFIAGLREVFERQIAFNQVLGLRITEVLPERVEGRITMRPELIGHAAYQRIHGGVISAGLDSMGGLAVMAAIGAKHMDDAPLQRLHRFSRLGTIDLRVDYLRPGIGSEFILRAEVLRLGSRVANTRMEFLGADGSLLSTGTAAYIVS</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-01-19" version="54" xmlns="http://uniprot.org/uniprot">
    <accession>A9BYM4</accession>
    <name>A9BYM4_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">DUF1508 domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_1927</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX34567.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012203852.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_1927"/>
    <dbReference type="EnsemblBacteria" id="ABX34567">
        <property type="protein sequence ID" value="ABX34567"/>
        <property type="gene ID" value="Daci_1927"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_1927"/>
    <dbReference type="eggNOG" id="COG3422">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_163886_3_1_4"/>
    <dbReference type="OMA" id="HRADAIN"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010879">
        <property type="entry name" value="DUF1508"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036913">
        <property type="entry name" value="YegP-like_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07411">
        <property type="entry name" value="DUF1508"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF160113">
        <property type="entry name" value="SSF160113"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="DUF1508" evidence="1">
        <location>
            <begin position="18"/>
            <end position="62"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF07411"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX34567.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="65" mass="7164" checksum="4E7797AB96B8D0A2" modified="2008-01-15" version="1">MKFEIYPSKMAGLLSSPTEWRWRLRASNGEIIASGESYVHKADCMHAINLVKTTSSATPVVELPG</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="76" xmlns="http://uniprot.org/uniprot">
    <accession>A9BYR7</accession>
    <name>A9BYR7_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="8">Amino acid permease-associated region</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="8" type="ordered locus">Daci_2172</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="9" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX34812.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012204095.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_2172"/>
    <dbReference type="PRIDE" id="A9BYR7"/>
    <dbReference type="EnsemblBacteria" id="ABX34812">
        <property type="protein sequence ID" value="ABX34812"/>
        <property type="gene ID" value="Daci_2172"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_2172"/>
    <dbReference type="eggNOG" id="COG1113">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_007946_9_3_4"/>
    <dbReference type="OMA" id="FSMLKIM"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006865">
        <property type="term" value="P:amino acid transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0055085">
        <property type="term" value="P:transmembrane transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004841">
        <property type="entry name" value="AA-permease/SLC12A_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004840">
        <property type="entry name" value="Amoino_acid_permease_CS"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00324">
        <property type="entry name" value="AA_permease"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00218">
        <property type="entry name" value="AMINO_ACID_PERMEASE_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="5 6" id="KW-0472">Membrane</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 6" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="4 6" id="KW-1133">Transmembrane helix</keyword>
    <keyword evidence="2" id="KW-0813">Transport</keyword>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="25"/>
            <end position="46"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="52"/>
            <end position="70"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="100"/>
            <end position="125"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="131"/>
            <end position="149"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="161"/>
            <end position="181"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="201"/>
            <end position="226"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="247"/>
            <end position="266"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="286"/>
            <end position="308"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="336"/>
            <end position="355"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="361"/>
            <end position="386"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="398"/>
            <end position="422"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="428"/>
            <end position="450"/>
        </location>
    </feature>
    <feature type="domain" description="AA_permease" evidence="7">
        <location>
            <begin position="23"/>
            <end position="452"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022448"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="Pfam" id="PF00324"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="ABX34812.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="477" mass="51088" checksum="5BE18E35E75741CC" modified="2008-01-15" version="1">MPAFEDIVQREAGLQQQLSAGQMTMIAIGGAVGTGLFLGSGFAIGFAGPSVLISYAIGAVISLLLMGCLAEMTVAHPTSGSFGAYAEHYIAPWAGFVVRYAYWACVVLAVGTEVTAVGLYMGYWFPEVPRWAWVVIFSGALIGVNMMSVKAFGAVEYSFSMIKIIAIVAFIVVGAWVVFGTRPAGVGFANYVNNGGFFPNGLWGTWVGVIIAIFSYLSIEMIAVAAGEAKDPQRAVTSAFRSTMVRLVVFYLATIALMLAIVPWSAAGKDGSPFVKVMEIIGLPGAASVVNFVVLVAALSAMNSQLYITTRMMFSLSRAGHAPAVLGRVNSRGVPLPALLLSCLGIAVATLFNIVNPEQSFMLMMAVAMFGAMFTWFMIFVTHLFFRIHWVRQGNKPLAFRMWGFPVLTLLGAALMLAALVSTLFTDVFRLTVLTGLPFLLLLGAIYAIWYRKPAGQPAPQTQTSTQAQAQAQVPAR</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="55" xmlns="http://uniprot.org/uniprot">
    <accession>A9BYX4</accession>
    <name>A9BYX4_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="13">HemY domain protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="13" type="ordered locus">Daci_2229</name>
    </gene>
    <organism evidence="13 14">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="13 14" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="14">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="14" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="14">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="1">Involved in a late step of protoheme IX synthesis.</text>
    </comment>
    <comment type="pathway">
        <text evidence="4">Porphyrin-containing compound metabolism; protoheme biosynthesis.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="3">Cell inner membrane</location>
            <topology evidence="3">Multi-pass membrane protein</topology>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="2">Membrane</location>
            <topology evidence="2">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX34869.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012204152.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_2229"/>
    <dbReference type="PRIDE" id="A9BYX4"/>
    <dbReference type="EnsemblBacteria" id="ABX34869">
        <property type="protein sequence ID" value="ABX34869"/>
        <property type="gene ID" value="Daci_2229"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_2229"/>
    <dbReference type="eggNOG" id="COG3071">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_037501_0_1_4"/>
    <dbReference type="OMA" id="RASAWRH"/>
    <dbReference type="UniPathway" id="UPA00252"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0042168">
        <property type="term" value="P:heme metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006779">
        <property type="term" value="P:porphyrin-containing compound biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.25.40.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005254">
        <property type="entry name" value="Heme_biosyn_assoc_TPR_pro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010817">
        <property type="entry name" value="HemY_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011990">
        <property type="entry name" value="TPR-like_helical_dom_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07219">
        <property type="entry name" value="HemY_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48452">
        <property type="entry name" value="SSF48452"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00540">
        <property type="entry name" value="TPR_hemY_coli"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="6" id="KW-0997">Cell inner membrane</keyword>
    <keyword evidence="5" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="9 11" id="KW-0472">Membrane</keyword>
    <keyword evidence="10" id="KW-0627">Porphyrin biosynthesis</keyword>
    <keyword evidence="14" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="7 11" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="8 11" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="11">
        <location>
            <begin position="40"/>
            <end position="66"/>
        </location>
    </feature>
    <feature type="domain" description="HemY_N" evidence="12">
        <location>
            <begin position="26"/>
            <end position="122"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00002962"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00004429"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00004744"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022519"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00023244"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="12">
        <source>
            <dbReference type="Pfam" id="PF07219"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="13">
        <source>
            <dbReference type="EMBL" id="ABX34869.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="14">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="435" mass="47637" checksum="EA00129EBC39511D" modified="2008-01-15" version="1">MRAALWLIGLFGMAVAAALFAGSNQGTVTLFWAPYRLDLSLNLAIAIIVLAFVLLYAALRALAALLQMPHQARRWRSQQKERAMHHSLLEALSHQQAGRFLRARKSALAALAMEESLAEAHAAVPHGTRLRAAAHMVAADASHALQDSPQRDHHWREVLANAPAQGNAQEQEMREGAQMRAARWALDDRDAADALRRLAELPQGAARRTIALRIRLKASRLAGQTSTALDTARLLAKHRAFSPAAAASVVRGLVLESINEARDTTQLQHFWLSLDGEERAMPEIALPAASRLMALGGEAAQARAWLLPVWERLLSHAGPRSESHLPRLVQVLEPCLDGLDGTWLARIEAATNSHPREPRLQYLAGMACVQRQLWGKAQQLLLRAAPHLQESALRTRAWQRLALMAEHRGDADAAAAAWKQAAQAVVMLPADPARP</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="48" xmlns="http://uniprot.org/uniprot">
    <accession>A9BZ25</accession>
    <name>A9BZ25_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Daci_2487</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="2" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX35125.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_2487"/>
    <dbReference type="PRIDE" id="A9BZ25"/>
    <dbReference type="EnsemblBacteria" id="ABX35125">
        <property type="protein sequence ID" value="ABX35125"/>
        <property type="gene ID" value="Daci_2487"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_2487"/>
    <dbReference type="eggNOG" id="COG4390">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_152519_0_0_4"/>
    <dbReference type="OMA" id="WFAEHVE"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016755">
        <property type="entry name" value="UCP019302"/>
    </dbReference>
    <dbReference type="Pfam" id="PF10084">
        <property type="entry name" value="DUF2322"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF019302">
        <property type="entry name" value="UCP019302"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ABX35125.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="109" mass="11601" checksum="FBDBDDA301E29477" modified="2008-01-15" version="1">MPFSMNFSARLQQLPTVTHLAALQLADAQGQVVATIENKPGQTGSLAVYHALAALYGGSITPAAAELGLEWYAEHTQDAIAFPGKHPNIDRLLAWSKGAESYQARLIAA</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="60" xmlns="http://uniprot.org/uniprot">
    <accession>A9BZ95</accession>
    <name>A9BZ95_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Alpha/beta hydrolase fold</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_2557</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX35195.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012204474.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_2557"/>
    <dbReference type="PRIDE" id="A9BZ95"/>
    <dbReference type="EnsemblBacteria" id="ABX35195">
        <property type="protein sequence ID" value="ABX35195"/>
        <property type="gene ID" value="Daci_2557"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_2557"/>
    <dbReference type="eggNOG" id="COG2267">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_020336_1_0_4"/>
    <dbReference type="OMA" id="GRVTPHY"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016787">
        <property type="term" value="F:hydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.1820">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029058">
        <property type="entry name" value="AB_hydrolase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000073">
        <property type="entry name" value="AB_hydrolase_1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00561">
        <property type="entry name" value="Abhydrolase_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53474">
        <property type="entry name" value="SSF53474"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="AB hydrolase-1" evidence="1">
        <location>
            <begin position="41"/>
            <end position="282"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF00561"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX35195.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="302" mass="33288" checksum="826C37E13F6C1F37" modified="2008-01-15" version="1">MASKASSSSAPVPASCYTQCAGYEIHYMDWQPAPDVAPAGTVVAWHGLARTGRDMDALAQFLAGQGWRVICPDTPGRGLSQWSRAPREEYRLGFYARIARGLFDALGLERAHWVGTSMGGAIGTVCASGLFEPSLRARIATLVLNDNAPQLAESALARIRSYAGQPPAFDTVGELEAFFRQAYRPYGWLSDSEWRKLTETSVRRLPDGRVTPHYDPAMIEQFTAHDDDYGIWPHYDALQIPVLLLRGVDSDLVLPEVAREMTTRGPGARGLLHWQEVPGCGHAPALNVPAHWQWVLEHLQRG</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="34" xmlns="http://uniprot.org/uniprot">
    <accession>A9C003</accession>
    <name>A9C003_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Daci_3633</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="2" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX36265.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="PRIDE" id="A9C003"/>
    <dbReference type="EnsemblBacteria" id="ABX36265">
        <property type="protein sequence ID" value="ABX36265"/>
        <property type="gene ID" value="Daci_3633"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_3633"/>
    <dbReference type="eggNOG" id="ENOG502ZFIW">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_2117015_0_0_4"/>
    <dbReference type="OMA" id="SAPYCTI"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ABX36265.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="114" mass="13002" checksum="F2E984BECF7CFBD4" modified="2008-01-15" version="1">MTEIADFAIWAKVRPADKREFRKWMAGQTGWREIDVYSRLGSAVEEGRHIELLKHLGWEDAQTELGQLPAFVEAGSARLTVTSFLPMDSAPYCTIHSLYVWRLGCPVCSNNFIR</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="66" xmlns="http://uniprot.org/uniprot">
    <accession>A9C0A0</accession>
    <name>A9C0A0_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Arylesterase</fullName>
            <ecNumber evidence="3">3.1.1.2</ecNumber>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Daci_4035</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="4" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EC" id="3.1.1.2" evidence="3"/>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX36666.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_4035"/>
    <dbReference type="PRIDE" id="A9C0A0"/>
    <dbReference type="EnsemblBacteria" id="ABX36666">
        <property type="protein sequence ID" value="ABX36666"/>
        <property type="gene ID" value="Daci_4035"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_4035"/>
    <dbReference type="eggNOG" id="COG2755">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_051180_3_1_4"/>
    <dbReference type="OMA" id="MRIPPNY"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004064">
        <property type="term" value="F:arylesterase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.1110">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013830">
        <property type="entry name" value="SGNH_hydro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036514">
        <property type="entry name" value="SGNH_hydro_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13472">
        <property type="entry name" value="Lipase_GDSL_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="1">
        <location>
            <begin position="1"/>
            <end position="27"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5002736055" evidence="1">
        <location>
            <begin position="28"/>
            <end position="214"/>
        </location>
    </feature>
    <feature type="domain" description="SGNH_hydro" evidence="2">
        <location>
            <begin position="35"/>
            <end position="197"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF13472"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ABX36666.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="214" mass="22970" checksum="F517177A411D588D" modified="2008-01-15" version="1">MRRRRHFISAGLAFGLLGTWTATSAWAAETGPLLVLGDSLSAEYGLARGTGWVALLQKRLQESPKNVPLVNASVSGETTSGGRSRLPALLKQHKPSVVVIELGGNDALRGLPLQSTQGNLDAMVRAARDAGAKVLLVGMQVPPNYGSGYTRQFEQLFAKVAQEQKVPLVPFLLAGIGDAADSAQWFQADRIHPTAKAQPRMLDNVWPQLSKLLP</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="79" xmlns="http://uniprot.org/uniprot">
    <accession>A9C0C8</accession>
    <name>A9C0C8_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Two component transcriptional regulator, Fis family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Daci_4063</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="4" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX36694.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012205888.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_4063"/>
    <dbReference type="PRIDE" id="A9C0C8"/>
    <dbReference type="EnsemblBacteria" id="ABX36694">
        <property type="protein sequence ID" value="ABX36694"/>
        <property type="gene ID" value="Daci_4063"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_4063"/>
    <dbReference type="eggNOG" id="COG4567">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_000445_69_6_4"/>
    <dbReference type="OMA" id="KTLEWEH"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043565">
        <property type="term" value="F:sequence-specific DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000160">
        <property type="term" value="P:phosphorelay signal transduction system"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011006">
        <property type="entry name" value="CheY-like_superfamily"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009057">
        <property type="entry name" value="Homeobox-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002197">
        <property type="entry name" value="HTH_Fis"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001789">
        <property type="entry name" value="Sig_transdc_resp-reg_receiver"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02954">
        <property type="entry name" value="HTH_8"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00072">
        <property type="entry name" value="Response_reg"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR01590">
        <property type="entry name" value="HTHFIS"/>
    </dbReference>
    <dbReference type="SMART" id="SM00448">
        <property type="entry name" value="REC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46689">
        <property type="entry name" value="SSF46689"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52172">
        <property type="entry name" value="SSF52172"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50110">
        <property type="entry name" value="RESPONSE_REGULATORY"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0597">Phosphoprotein</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Response regulatory" evidence="2">
        <location>
            <begin position="6"/>
            <end position="121"/>
        </location>
    </feature>
    <feature type="modified residue" description="4-aspartylphosphate" evidence="1">
        <location>
            <position position="55"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00169"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS50110"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ABX36694.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="178" mass="19928" checksum="7D360D8F686000FD" modified="2008-01-15" version="1">MDSSRLLLLVEDDATFARTLTRSFERRGYRVLQAASAEEVRELLQTHSPQYAVMDLKLAGNASGLSCVQMLHQHNPEALIVVLTGYASIATAVEAVKLGACHYLAKPSNTDDIEAAFGRLEGRTDVELSRNPTSIKTLEWEHIHETLAESDFNISEAARRLGMHRRTLARKLEKRQIK</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="56" xmlns="http://uniprot.org/uniprot">
    <accession>A9C0G8</accession>
    <name>A9C0G8_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Anti-sigma-factor antagonist</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_4410</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX37041.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012206213.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_4410"/>
    <dbReference type="PRIDE" id="A9C0G8"/>
    <dbReference type="EnsemblBacteria" id="ABX37041">
        <property type="protein sequence ID" value="ABX37041"/>
        <property type="gene ID" value="Daci_4410"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_4410"/>
    <dbReference type="eggNOG" id="COG1366">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_138490_0_0_4"/>
    <dbReference type="OMA" id="MSNLMGA"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.750.24">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002645">
        <property type="entry name" value="STAS_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036513">
        <property type="entry name" value="STAS_dom_sf"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52091">
        <property type="entry name" value="SSF52091"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50801">
        <property type="entry name" value="STAS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="STAS" evidence="1">
        <location>
            <begin position="2"/>
            <end position="113"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS50801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX37041.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="124" mass="12880" checksum="A518FA681D6EB6F7" modified="2008-01-15" version="1">MDRIPILRMGDVLLVSIQIDMQDQTALALQDDLAERIASTGASGVMIDISALEVVDSFVGRMLVTISGIARILSAATVVVGMQPAVAITLVELGLSLGGVRTAMTVERGMALLRAQQSGATLGT</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="93" xmlns="http://uniprot.org/uniprot">
    <accession>A9C1B7</accession>
    <name>A9C1B7_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="19">Excinuclease ABC, A subunit</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="19" type="ordered locus">Daci_5952</name>
    </gene>
    <organism evidence="19 20">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="19 20" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="20">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="20" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="20">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="17">Lacks conserved residue(s) required for the propagation of feature annotation.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX38580.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012207749.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_5952"/>
    <dbReference type="PRIDE" id="A9C1B7"/>
    <dbReference type="EnsemblBacteria" id="ABX38580">
        <property type="protein sequence ID" value="ABX38580"/>
        <property type="gene ID" value="Daci_5952"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_5952"/>
    <dbReference type="eggNOG" id="COG0178">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_001370_3_0_4"/>
    <dbReference type="OMA" id="SKHGWCP"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009380">
        <property type="term" value="C:excinuclease repair complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016887">
        <property type="term" value="F:ATP hydrolysis activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004518">
        <property type="term" value="F:nuclease activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006289">
        <property type="term" value="P:nucleotide-excision repair"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009432">
        <property type="term" value="P:SOS response"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.1490.20">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="5"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003593">
        <property type="entry name" value="AAA+_ATPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003439">
        <property type="entry name" value="ABC_transporter-like_ATP-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017871">
        <property type="entry name" value="ABC_transporter-like_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013815">
        <property type="entry name" value="ATP_grasp_subdomain_1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004602">
        <property type="entry name" value="UvrA"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041552">
        <property type="entry name" value="UvrA_DNA-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041102">
        <property type="entry name" value="UvrA_inter"/>
    </dbReference>
    <dbReference type="Pfam" id="PF17755">
        <property type="entry name" value="UvrA_DNA-bind"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF17760">
        <property type="entry name" value="UvrA_inter"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SMART" id="SM00382">
        <property type="entry name" value="AAA"/>
        <property type="match status" value="3"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="4"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00630">
        <property type="entry name" value="uvra"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00211">
        <property type="entry name" value="ABC_TRANSPORTER_1"/>
        <property type="match status" value="3"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50893">
        <property type="entry name" value="ABC_TRANSPORTER_2"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="10 17" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="1" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="2" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="6" id="KW-0227">DNA damage</keyword>
    <keyword evidence="7" id="KW-0228">DNA excision</keyword>
    <keyword evidence="15" id="KW-0234">DNA repair</keyword>
    <keyword evidence="13" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="11" id="KW-0267">Excision nuclease</keyword>
    <keyword evidence="14" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="5 17" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="20" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4" id="KW-0677">Repeat</keyword>
    <keyword evidence="16" id="KW-0742">SOS response</keyword>
    <keyword evidence="12" id="KW-1278">Translocase</keyword>
    <keyword evidence="9" id="KW-0862">Zinc</keyword>
    <keyword evidence="8" id="KW-0863">Zinc-finger</keyword>
    <feature type="domain" description="ABC transporter" evidence="18">
        <location>
            <begin position="428"/>
            <end position="643"/>
        </location>
    </feature>
    <feature type="domain" description="ABC transporter" evidence="18">
        <location>
            <begin position="660"/>
            <end position="1012"/>
        </location>
    </feature>
    <feature type="binding site" evidence="17">
        <location>
            <begin position="695"/>
            <end position="702"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022490"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022737"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022763"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022769"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00022771"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00022833"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="ARBA" id="ARBA00022881"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="12">
        <source>
            <dbReference type="ARBA" id="ARBA00022967"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="13">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="14">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="15">
        <source>
            <dbReference type="ARBA" id="ARBA00023204"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="16">
        <source>
            <dbReference type="ARBA" id="ARBA00023236"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="17">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00434"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="18">
        <source>
            <dbReference type="PROSITE" id="PS50893"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="19">
        <source>
            <dbReference type="EMBL" id="ABX38580.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="20">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="1984" mass="215516" checksum="6B9AE2138679C37B" modified="2008-01-15" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="42" xmlns="http://uniprot.org/uniprot">
    <accession>A9C1C7</accession>
    <name>A9C1C7_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Daci_5962</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
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                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
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            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="2" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX38590.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_5962"/>
    <dbReference type="PRIDE" id="A9C1C7"/>
    <dbReference type="EnsemblBacteria" id="ABX38590">
        <property type="protein sequence ID" value="ABX38590"/>
        <property type="gene ID" value="Daci_5962"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_5962"/>
    <dbReference type="eggNOG" id="COG3313">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_162538_1_1_4"/>
    <dbReference type="OMA" id="AIESPCI"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010710">
        <property type="entry name" value="DUF1289"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR35175">
        <property type="entry name" value="PTHR35175"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF06945">
        <property type="entry name" value="DUF1289"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ABX38590.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="81" mass="8943" checksum="DD75B9E92758A910" modified="2008-01-15" version="1">MMGPKEMLAQKARAAYAPRAEEEPVLSPCISVCRMTPDRSHCEGCFRTIDEIRAWSKSDAPQRLAIWNALLERAGIAATAP</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="91" xmlns="http://uniprot.org/uniprot">
    <accession>A9C1F9</accession>
    <name>A9C1F9_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="10">Glutathione synthetase</fullName>
            <ecNumber evidence="10">6.3.2.3</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="10">GSH synthetase</fullName>
            <shortName evidence="10">GSH-S</shortName>
            <shortName evidence="10">GSHase</shortName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="10">Glutathione synthase</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="10" type="primary">gshB</name>
        <name evidence="13" type="ordered locus">Daci_5994</name>
    </gene>
    <organism evidence="13 14">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="13 14" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="14">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="14" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="14">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="10">
            <text>ATP + gamma-L-glutamyl-L-cysteine + glycine = ADP + glutathione + H(+) + phosphate</text>
            <dbReference type="Rhea" id="RHEA:13557"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:43474"/>
            <dbReference type="ChEBI" id="CHEBI:57305"/>
            <dbReference type="ChEBI" id="CHEBI:57925"/>
            <dbReference type="ChEBI" id="CHEBI:58173"/>
            <dbReference type="ChEBI" id="CHEBI:456216"/>
            <dbReference type="EC" id="6.3.2.3"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="2">
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </cofactor>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>Mn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29035"/>
        </cofactor>
    </comment>
    <comment type="pathway">
        <text evidence="10">Sulfur metabolism; glutathione biosynthesis; glutathione from L-cysteine and L-glutamate: step 2/2.</text>
    </comment>
    <comment type="similarity">
        <text evidence="10">Belongs to the prokaryotic GSH synthase family.</text>
    </comment>
    <dbReference type="EC" id="6.3.2.3" evidence="10"/>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX38622.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012207791.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_5994"/>
    <dbReference type="PRIDE" id="A9C1F9"/>
    <dbReference type="EnsemblBacteria" id="ABX38622">
        <property type="protein sequence ID" value="ABX38622"/>
        <property type="gene ID" value="Daci_5994"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_5994"/>
    <dbReference type="eggNOG" id="COG0189">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_068239_0_0_4"/>
    <dbReference type="OMA" id="WMRKDPP"/>
    <dbReference type="UniPathway" id="UPA00142">
        <property type="reaction ID" value="UER00210"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004363">
        <property type="term" value="F:glutathione synthase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.1490.20">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00162">
        <property type="entry name" value="GSH_S"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011761">
        <property type="entry name" value="ATP-grasp"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013815">
        <property type="entry name" value="ATP_grasp_subdomain_1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006284">
        <property type="entry name" value="Glut_synth_pro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004218">
        <property type="entry name" value="GSHS_ATP-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004215">
        <property type="entry name" value="GSHS_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016185">
        <property type="entry name" value="PreATP-grasp_dom_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR21621:SF4">
        <property type="entry name" value="PTHR21621:SF4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02955">
        <property type="entry name" value="GSH-S_ATP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02951">
        <property type="entry name" value="GSH-S_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52440">
        <property type="entry name" value="SSF52440"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01380">
        <property type="entry name" value="glut_syn"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50975">
        <property type="entry name" value="ATP_GRASP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="7 10 11" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="4 10" id="KW-0317">Glutathione biosynthesis</keyword>
    <keyword evidence="3 10 13" id="KW-0436">Ligase</keyword>
    <keyword evidence="8" id="KW-0460">Magnesium</keyword>
    <keyword evidence="9" id="KW-0464">Manganese</keyword>
    <keyword evidence="5" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="6 10 11" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="14" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="ATP-grasp" evidence="12">
        <location>
            <begin position="125"/>
            <end position="310"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001936"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00001946"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022598"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022684"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00022842"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00023211"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00162"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00409"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="12">
        <source>
            <dbReference type="PROSITE" id="PS50975"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="13">
        <source>
            <dbReference type="EMBL" id="ABX38622.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="14">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="316" mass="34746" checksum="1FC22998425CF6F6" modified="2008-01-15" version="1">MQILFVADPLESFQTYKDTTFAMMREAQRRGHSIVACEPRQLSWQRGGKVVAHVRHIQLTGDAQQWFETTQEGLAELAGFDAILMRKDPPFDSEYFYSTHLLEQAEREGAKVFNKPRALRDHPEKLAILEFPQFIGPTLVTRSAQDIRAFHEEHQDIILKPLDGMGGMGIFRVGADGRNLGSIIETLNQGGASSVMVQKFLPEITQGDKRVLVIGGKPVPYCLARIPQGNEVRGNLAAGGKGVAQPLSEHDKAMAEEIGPILMERGLLLAGVDVIGQCITEINVTSPTCFQEIYDQTGCDVASLFVDALEQALATA</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="55" xmlns="http://uniprot.org/uniprot">
    <accession>A9C1K1</accession>
    <name>A9C1K1_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Aminoglycoside phosphotransferase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Daci_6036</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="4" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX38664.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_6036"/>
    <dbReference type="PRIDE" id="A9C1K1"/>
    <dbReference type="EnsemblBacteria" id="ABX38664">
        <property type="protein sequence ID" value="ABX38664"/>
        <property type="gene ID" value="Daci_6036"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_6036"/>
    <dbReference type="eggNOG" id="COG3178">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_021467_1_0_4"/>
    <dbReference type="OMA" id="HSRNLMV"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016740">
        <property type="term" value="F:transferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002575">
        <property type="entry name" value="Aminoglycoside_PTrfase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011009">
        <property type="entry name" value="Kinase-like_dom_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01636">
        <property type="entry name" value="APH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56112">
        <property type="entry name" value="SSF56112"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="APH" evidence="2">
        <location>
            <begin position="102"/>
            <end position="329"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="51"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF01636"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ABX38664.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="427" mass="47564" checksum="B8AEE4C72C374F10" modified="2008-01-15" version="1">MREPQARPAGVQRGARARGQPADRGAAVGGTRWSTAAGGQRRKPSITAGHSPGWRFVESRLSMSHPNTPTAGVVWADPARHAAFDAWLAPLSARHALRPETLRPASADASFRRYLRLDTSAGASLIVMDAPPDKEDCAPFAKVQALMASAGLAVPQILDWDAAHGFMLLSDLGGHTVIEALDPEKPQDAEAWYRSALEVLMAWQTASRPDVLPAYDDALLRRELQLFPDWYIARHRETVLDDRQQATLAKAFDQIVAHNLAAPSVFVHRDFMTRNLMQPVTASGPLGVLDFQDAVYGPVTYDIASLLRDAFISWEEDFVIDITVRYWEKARKSGLVGARSQSGWGDDFGEFYRGVEWMGLQRHLKVAGIFARLTLRDGKPRYLADAPRFIHYIRSTCSRYRELTPLLRLVDQIENIQPQVGWAYGRV</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-01-19" version="32" xmlns="http://uniprot.org/uniprot">
    <accession>A9C1P7</accession>
    <name>A9C1P7_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_2594</name>
        <name evidence="3" type="ordered locus">Daci_2628</name>
    </gene>
    <organism evidence="2 4">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 4" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
            <strain evidence="2">SPH-1</strain>
        </source>
    </reference>
    <reference evidence="4" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="2" key="3">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX35232.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX35266.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012204511.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_2594"/>
    <dbReference type="EnsemblBacteria" id="ABX35232">
        <property type="protein sequence ID" value="ABX35232"/>
        <property type="gene ID" value="Daci_2594"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="ABX35266">
        <property type="protein sequence ID" value="ABX35266"/>
        <property type="gene ID" value="Daci_2628"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_2594"/>
    <dbReference type="KEGG" id="dac:Daci_2628"/>
    <dbReference type="HOGENOM" id="CLU_1213204_0_0_4"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="146"/>
            <end position="168"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX35232.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ABX35266.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="228" mass="22291" checksum="23354EB0F7CB80EA" modified="2008-01-15" version="1">MSFDPITNAGVKALQGQVNTVQSQTTALTTKLAQIESALASLNTAQASSRKPLRVTEYTSGAGTHTFLPESTHQYITLVGAGGAGGAGYLSGSQHIQNGGGSAGYELRLRMALTATAAYQVGAGGGTSGAQGGRTVLGALAVSGGAGGSSDRSYTPPPQVGTGGVETGEAGSFAKGGNSTMGIGGQCYGLYGSIPLGYATGYGAGGGGSYGPGGFSPGTGGYIRIEEY</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="74" xmlns="http://uniprot.org/uniprot">
    <accession>A9C230</accession>
    <name>A9C230_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="8">ABC transporter related</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="8" type="ordered locus">Daci_3028</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="9" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX35666.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012204872.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_3028"/>
    <dbReference type="PRIDE" id="A9C230"/>
    <dbReference type="EnsemblBacteria" id="ABX35666">
        <property type="protein sequence ID" value="ABX35666"/>
        <property type="gene ID" value="Daci_3028"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_3028"/>
    <dbReference type="eggNOG" id="COG0411">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_000604_1_2_4"/>
    <dbReference type="OMA" id="YLGAHHD"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003593">
        <property type="entry name" value="AAA+_ATPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003439">
        <property type="entry name" value="ABC_transporter-like_ATP-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00005">
        <property type="entry name" value="ABC_tran"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00382">
        <property type="entry name" value="AAA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50893">
        <property type="entry name" value="ABC_TRANSPORTER_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3 6" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="1" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="5" id="KW-0472">Membrane</keyword>
    <keyword evidence="2 6" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4" id="KW-1278">Translocase</keyword>
    <feature type="domain" description="ABC transporter" evidence="7">
        <location>
            <begin position="22"/>
            <end position="273"/>
        </location>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <begin position="54"/>
            <end position="61"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022967"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00434"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="PROSITE" id="PS50893"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="ABX35666.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="278" mass="29893" checksum="0129F128CF2B5DD7" modified="2008-01-15" version="1">MSIDPHPPQHAAHAAPAGPLVLEGRGLTMRFGGLTAVQGVDIHLAAGEVLGIIGPNGAGKSTLLNLLTGIYQPTEGEVLLQGRSLKGMAAHDIAGAGIARTFQTSRLFGSLSVLDNVIIGMHARTRCGVLTALLRPAVSRAEMKRCAERACALLQSVSSDLHQRRNVLASSLPQADRRRLEIARALAAEPRIVLLDEPSSGMDDRDTDALIADIQRLREGNPALGFIIIEHDMRLIATLPHRVMVLDYGRKIGDDSFEAVRRLPRVQEAYLGRKASHA</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="34" xmlns="http://uniprot.org/uniprot">
    <accession>A9C298</accession>
    <name>A9C298_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Daci_3404</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="2" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX36042.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_3404"/>
    <dbReference type="PRIDE" id="A9C298"/>
    <dbReference type="EnsemblBacteria" id="ABX36042">
        <property type="protein sequence ID" value="ABX36042"/>
        <property type="gene ID" value="Daci_3404"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_3404"/>
    <dbReference type="eggNOG" id="ENOG5033CFI">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_1419405_0_0_4"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ABX36042.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="191" mass="20713" checksum="7AF7864714E48576" modified="2008-01-15" version="1">MSVNGIALAVGQRWLTRSGRVCSVQSEIPGKRNYYHWEVKGLDGVWAVTHEGFQGVDGAPRNGDLIELVAQPAPAPVPPGEDLQVESIELAAADLPNRAPDILEAAAGHLRDRAATYDKPEGERSMAQTVTIFNQFHGAGMTEAQGWHFMQILKDVRLFTRDGYHQDSGEDCVAYAALKCEAKAREGGAPC</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-01-19" version="30" xmlns="http://uniprot.org/uniprot">
    <accession>A9C2D4</accession>
    <name>A9C2D4_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Daci_3440</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="2" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX36078.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012205278.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_3440"/>
    <dbReference type="EnsemblBacteria" id="ABX36078">
        <property type="protein sequence ID" value="ABX36078"/>
        <property type="gene ID" value="Daci_3440"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_3440"/>
    <dbReference type="HOGENOM" id="CLU_2272793_0_0_4"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ABX36078.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="102" mass="11489" checksum="E2A8CA5C8E797499" modified="2008-01-15" version="1">MLDLFQEMAEGILDEIGEDAFYDGATEPIKINIEHGVQLAGIGGEEAQYRGDLVANRDVATIHARHNPQQFKKFVQNGKTYQLDVPVEDNGVTRRFVVMELR</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="52" xmlns="http://uniprot.org/uniprot">
    <accession>A9C2N0</accession>
    <name>A9C2N0_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="9">AzlC family protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="9" type="ordered locus">Daci_3747</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="9 10" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="10" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the AzlC family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX36379.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012205573.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_3747"/>
    <dbReference type="PRIDE" id="A9C2N0"/>
    <dbReference type="EnsemblBacteria" id="ABX36379">
        <property type="protein sequence ID" value="ABX36379"/>
        <property type="gene ID" value="Daci_3747"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_3747"/>
    <dbReference type="eggNOG" id="COG1296">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_065777_2_1_4"/>
    <dbReference type="OMA" id="DFAFPAV"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011606">
        <property type="entry name" value="Brnchd-chn_aa_trnsp_permease"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR34979">
        <property type="entry name" value="PTHR34979"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03591">
        <property type="entry name" value="AzlC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="7 8" id="KW-0472">Membrane</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="5 8" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="6 8" id="KW-1133">Transmembrane helix</keyword>
    <keyword evidence="3" id="KW-0813">Transport</keyword>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="84"/>
            <end position="105"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="146"/>
            <end position="168"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="180"/>
            <end position="198"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="223"/>
            <end position="242"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00010735"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022448"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="ABX36379.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="245" mass="26212" checksum="27D5D03524878BE0" modified="2008-01-15" version="1">MSSSIPLSPAAVSADSVSRSSEAFRGFRDAIPVMLGFVPFALVLGAQAVQKGLAPLEVPLMTGMNFGGGSEFTAIRLWTSPPHALLIVAMSFLVNCRHILMGAALAPYLRHLPRRRALPALFFMCDESWALALADAQRSAARRVSLPYYMGVSAGLYMAWVSCTAAGAFLGPRIGDLEQYGFDMAFTAVFLVLLRGMWKGVRPCRPWLVSLLTAALVYKLVPGAWYVAAGAVSGLICAALLAPRS</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="57" xmlns="http://uniprot.org/uniprot">
    <accession>A9C348</accession>
    <name>A9C348_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Putative acyl protein synthase/acyl-CoA reductase-like protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_4530</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX37159.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012206329.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_4530"/>
    <dbReference type="PRIDE" id="A9C348"/>
    <dbReference type="EnsemblBacteria" id="ABX37159">
        <property type="protein sequence ID" value="ABX37159"/>
        <property type="gene ID" value="Daci_4530"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_4530"/>
    <dbReference type="eggNOG" id="COG1541">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_043257_0_0_4"/>
    <dbReference type="OMA" id="METGGMK"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0047474">
        <property type="term" value="F:long-chain fatty acid luciferin component ligase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008218">
        <property type="term" value="P:bioluminescence"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.12780">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020845">
        <property type="entry name" value="AMP-binding_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR042099">
        <property type="entry name" value="ANL_N_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007534">
        <property type="entry name" value="LuxE"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04443">
        <property type="entry name" value="LuxE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00455">
        <property type="entry name" value="AMP_BINDING"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="LuxE" evidence="1">
        <location>
            <begin position="29"/>
            <end position="365"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF04443"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX37159.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="372" mass="40519" checksum="168826078F472B92" modified="2008-01-15" version="1">MDKARPQAASLVADLLAFIAMDGCTDEQFDALALRLFAYQYESNAPFRSFCQRRGATLRNVKTWSDIPAVPIDAFKAMELRSEPASPAERVFMTSGTTGQAKGLSARGRHFHPALDVYDASMTRNFAQRFMAGHERLPMGILFPDEQAMPNSSLAHYLALAKTEFGTPDSRYFLTPDGLDMPGLCAVLEESERSGRPYALLGASFSLVHVMDALREQGRSFRLPPGSRILDTGGYKGQSRELPLEDFYADLARLLGVPRSHCINMYGMTELSTQFYDDGNATLPSVKSGPHWIRSRLVEPVTGRSVAPGERGILVHCDLANYNAVTTILTEDVGLWAGHGENSGFLLLGRAEGAAAKGCSLAVDEFVKAAAA</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="73" xmlns="http://uniprot.org/uniprot">
    <accession>A9C3C5</accession>
    <name>A9C3C5_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="6">FAD linked oxidase domain protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ordered locus">Daci_4607</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="7" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX37236.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012206406.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_4607"/>
    <dbReference type="PRIDE" id="A9C3C5"/>
    <dbReference type="EnsemblBacteria" id="ABX37236">
        <property type="protein sequence ID" value="ABX37236"/>
        <property type="gene ID" value="Daci_4607"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_4607"/>
    <dbReference type="eggNOG" id="COG0247">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="eggNOG" id="COG0277">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_010756_1_0_4"/>
    <dbReference type="OMA" id="FKPNGKP"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0071949">
        <property type="term" value="F:FAD binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051536">
        <property type="term" value="F:iron-sulfur cluster binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016491">
        <property type="term" value="F:oxidoreductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.465.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017896">
        <property type="entry name" value="4Fe4S_Fe-S-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017900">
        <property type="entry name" value="4Fe4S_Fe_S_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016166">
        <property type="entry name" value="FAD-bd_PCMH"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036318">
        <property type="entry name" value="FAD-bd_PCMH-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016169">
        <property type="entry name" value="FAD-bd_PCMH_sub2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016164">
        <property type="entry name" value="FAD-linked_Oxase-like_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004113">
        <property type="entry name" value="FAD-linked_oxidase_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006094">
        <property type="entry name" value="Oxid_FAD_bind_N"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02913">
        <property type="entry name" value="FAD-oxidase_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01565">
        <property type="entry name" value="FAD_binding_4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13183">
        <property type="entry name" value="Fer4_8"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55103">
        <property type="entry name" value="SSF55103"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56176">
        <property type="entry name" value="SSF56176"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00198">
        <property type="entry name" value="4FE4S_FER_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51379">
        <property type="entry name" value="4FE4S_FER_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51387">
        <property type="entry name" value="FAD_PCMH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0408">Iron</keyword>
    <keyword evidence="3" id="KW-0411">Iron-sulfur</keyword>
    <keyword evidence="1" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="FAD-binding PCMH-type" evidence="5">
        <location>
            <begin position="50"/>
            <end position="282"/>
        </location>
    </feature>
    <feature type="domain" description="4Fe-4S ferredoxin-type" evidence="4">
        <location>
            <begin position="658"/>
            <end position="690"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023004"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023014"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="PROSITE" id="PS51379"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="PROSITE" id="PS51387"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="ABX37236.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="1017" mass="111853" checksum="6297A70FE4D0C23E" modified="2008-01-15" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2021-06-02" version="30" xmlns="http://uniprot.org/uniprot">
    <accession>A9C3J8</accession>
    <name>A9C3J8_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Daci_4680</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="2" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX37309.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012206479.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_4680"/>
    <dbReference type="EnsemblBacteria" id="ABX37309">
        <property type="protein sequence ID" value="ABX37309"/>
        <property type="gene ID" value="Daci_4680"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_4680"/>
    <dbReference type="HOGENOM" id="CLU_1683687_0_0_4"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ABX37309.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="156" mass="16663" checksum="D48088D264E12241" modified="2008-01-15" version="1">MAQHMQQQILAAWRVDLVLAATLAGDSVRVEGRNAYPVSALPAIDISAADEGIEPLSGGRGGLATLHREFLVDVTSIATGEQAREQAMELHAQIEERMGPAAGGVLHGLLIAPPRLRGIRGQWDDAATQPIYIVRGMWLCRYLTAEGAPRGPASHP</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="54" xmlns="http://uniprot.org/uniprot">
    <accession>A9BLF6</accession>
    <name>A9BLF6_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">SnoaL-like domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_3810</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX36441.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012205635.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_3810"/>
    <dbReference type="PRIDE" id="A9BLF6"/>
    <dbReference type="EnsemblBacteria" id="ABX36441">
        <property type="protein sequence ID" value="ABX36441"/>
        <property type="gene ID" value="Daci_3810"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_3810"/>
    <dbReference type="eggNOG" id="COG3631">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_106738_8_0_4"/>
    <dbReference type="OMA" id="LLARQAC"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR032710">
        <property type="entry name" value="NTF2-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037401">
        <property type="entry name" value="SnoaL-like"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13577">
        <property type="entry name" value="SnoaL_4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54427">
        <property type="entry name" value="SSF54427"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="SnoaL-like" evidence="1">
        <location>
            <begin position="6"/>
            <end position="137"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF13577"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX36441.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="150" mass="16442" checksum="882F2A6BFC7033BD" modified="2008-01-15" version="1">MNHEIDRLLARQACLDLVLRAAAFADAGDAQALAQLFAEDGQLQRPGGEVLGGRAAIAAAYSRRPAGRMTRHLVTNTLVELQGPDRASARSQVLLWSCDEADAITPHGRPAQPRQLVGEFDDIFGRSPEGHWLITRRVARFVMYRDLPGT</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="67" xmlns="http://uniprot.org/uniprot">
    <accession>A9BLI8</accession>
    <name>A9BLI8_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Protein serine/threonine phosphatase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_3842</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX36473.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012205667.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_3842"/>
    <dbReference type="PRIDE" id="A9BLI8"/>
    <dbReference type="EnsemblBacteria" id="ABX36473">
        <property type="protein sequence ID" value="ABX36473"/>
        <property type="gene ID" value="Daci_3842"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_3842"/>
    <dbReference type="eggNOG" id="COG0631">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_034545_5_0_4"/>
    <dbReference type="OMA" id="CVLARYH"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004722">
        <property type="term" value="F:protein serine/threonine phosphatase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.60.40.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036457">
        <property type="entry name" value="PPM-type_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001932">
        <property type="entry name" value="PPM-type_phosphatase_dom"/>
    </dbReference>
    <dbReference type="SMART" id="SM00331">
        <property type="entry name" value="PP2C_SIG"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00332">
        <property type="entry name" value="PP2Cc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF81606">
        <property type="entry name" value="SSF81606"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51746">
        <property type="entry name" value="PPM_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="PPM-type phosphatase" evidence="1">
        <location>
            <begin position="13"/>
            <end position="255"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS51746"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX36473.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="262" mass="28428" checksum="044E20BC19ADBFF6" modified="2008-01-15" version="1">MIAYLDGADHRYSIQVASASHSGRRSSNEDAMGLMDLGAGGLCCTLADGAGGHGHGELAAQLTVQAVLEGFRENPLFAPASLASLISQAEHRVSGQQSTSASRMHMSATVVVLCIDPEQGRALWAHWGDSRLYWFRAGRMHLRTEDHSLVQQLLHAGLYEENDPRRLPNRNVLAGAIGAEGQVPPSIRANAVALEAGDVFLLCSDGLWEGMHESEMEQLLTASQRPDEWIQRMVGRVVSSGNPHQDNLSALTVWICPRETND</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="62" xmlns="http://uniprot.org/uniprot">
    <accession>A9BLP7</accession>
    <name>A9BLP7_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="5">DNA methylase N-4/N-6 domain protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ordered locus">Daci_4205</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="6" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the N(4)/N(6)-methyltransferase family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX36836.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012206008.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_4205"/>
    <dbReference type="REBASE" id="16645">
        <property type="entry name" value="M.DacSPHORF4205P"/>
    </dbReference>
    <dbReference type="PRIDE" id="A9BLP7"/>
    <dbReference type="EnsemblBacteria" id="ABX36836">
        <property type="protein sequence ID" value="ABX36836"/>
        <property type="gene ID" value="Daci_4205"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_4205"/>
    <dbReference type="eggNOG" id="COG2189">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_020164_2_1_4"/>
    <dbReference type="OMA" id="QDDRKFT"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008170">
        <property type="term" value="F:N-methyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009007">
        <property type="term" value="F:site-specific DNA-methyltransferase (adenine-specific) activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.150">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002941">
        <property type="entry name" value="DNA_methylase_N4/N6"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002052">
        <property type="entry name" value="DNA_methylase_N6_adenine_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002295">
        <property type="entry name" value="N4/N6-MTase_EcoPI_Mod-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029063">
        <property type="entry name" value="SAM-dependent_MTases_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01555">
        <property type="entry name" value="N6_N4_Mtase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF015855">
        <property type="entry name" value="TypeIII_Mtase_mKpnI"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00506">
        <property type="entry name" value="D21N6MTFRASE"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53335">
        <property type="entry name" value="SSF53335"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00092">
        <property type="entry name" value="N6_MTASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2 5" id="KW-0489">Methyltransferase</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="N6_N4_Mtase" evidence="4">
        <location>
            <begin position="121"/>
            <end position="452"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00006594"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022603"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="Pfam" id="PF01555"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="ABX36836.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="661" mass="73536" checksum="A7764E13F6E36C2B" modified="2008-01-15" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="51" xmlns="http://uniprot.org/uniprot">
    <accession>A9BM72</accession>
    <name>A9BM72_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Putative transmembrane protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Daci_4788</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="4" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX37417.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012206587.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_4788"/>
    <dbReference type="PRIDE" id="A9BM72"/>
    <dbReference type="EnsemblBacteria" id="ABX37417">
        <property type="protein sequence ID" value="ABX37417"/>
        <property type="gene ID" value="Daci_4788"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_4788"/>
    <dbReference type="eggNOG" id="COG1379">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_029780_0_0_4"/>
    <dbReference type="OMA" id="GFQHRMG"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025235">
        <property type="entry name" value="DUF4178"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13785">
        <property type="entry name" value="DUF4178"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1 3" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="453"/>
            <end position="472"/>
        </location>
    </feature>
    <feature type="domain" description="DUF4178" evidence="2">
        <location>
            <begin position="67"/>
            <end position="208"/>
        </location>
    </feature>
    <feature type="domain" description="DUF4178" evidence="2">
        <location>
            <begin position="284"/>
            <end position="426"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF13785"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ABX37417.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="510" mass="55448" checksum="0011C227C2E0228E" modified="2008-01-15" version="1">MASSPSQRVYRAPCPGCGAPVEFSSAQASYAVCEFCRSTVVRQGDVLQRRGSMAEVFEDYSPLRIGATGQMLRNGKPEHFTLVGRLQLKSEAGAWSEWVAAFSDGALGFLSEDNGQFVWSWPWEAEALRNGPFKASDWLLGSQRVLGGKSFTVSSVQNARLVSAQGELAQLPEPGTPYRLVELRSEQGQVLSVDFSAQPPALSLGERVVLDDLRLQGLRDGASLKGEQGRHFNCPKCGAVVPVRFTTTKSLSCPSCGSLVDLSQGIGKELSYAEQNEPVRPAIPLGSKGALEGLQWQVVGFQHRMGEEAGDDESFGWEEYLLFSQKAGFAFLVDSSDGWSMARVTTGVPKLSKNRSTAKYMGRQYQLESRYTAETTYALGEFYWPVQRGQTTRNVDYVSAGAQNKAFLASETENGETTWSHGSAVSATTLATAFGLKQLRDRSQVGVMSGSRFGLWTIVIGVVILWLVFVMLRGCMSRPNCDPNTDPNCNSYTRSSGGSWGGYTSGGSHK</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="51" xmlns="http://uniprot.org/uniprot">
    <accession>A9BMC5</accession>
    <name>A9BMC5_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Tetratricopeptide TPR_2 repeat protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_4841</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX37470.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012206640.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_4841"/>
    <dbReference type="PRIDE" id="A9BMC5"/>
    <dbReference type="EnsemblBacteria" id="ABX37470">
        <property type="protein sequence ID" value="ABX37470"/>
        <property type="gene ID" value="Daci_4841"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_4841"/>
    <dbReference type="eggNOG" id="COG0457">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_090599_0_0_4"/>
    <dbReference type="OMA" id="YLALEWE"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.25.40.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011990">
        <property type="entry name" value="TPR-like_helical_dom_sf"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48452">
        <property type="entry name" value="SSF48452"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="1">
        <location>
            <begin position="1"/>
            <end position="23"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5002732325" evidence="1">
        <location>
            <begin position="24"/>
            <end position="268"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX37470.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="268" mass="29584" checksum="8B3D7E803E68B69E" modified="2008-01-15" version="1">MKFSLLAAAAVALQLLAPAPALAADDIVFKDSAGRVLRRSDLDKADGRFSWELPSATPVSQAARDAHALGRAAGQNGDYRAALAHFETASKLAPRWPYPVYDAAFTYLLQKDFGAAYRRYRRVDALAPRGFFTAKTAVHSLRMERDGKLPQGTYLRYLALEWETDRDKTRQAALAMTRETPGFAPAWKTAAHLEDDPAKRLALLDSGLKADPDAETRGFLLLNKAMVLRERNQIPEAMVMLGELAVDPQSPLDVEALARHTLAQWARP</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="41" xmlns="http://uniprot.org/uniprot">
    <accession>A9BME1</accession>
    <name>A9BME1_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Daci_4857</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="4" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX37486.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012206656.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_4857"/>
    <dbReference type="PRIDE" id="A9BME1"/>
    <dbReference type="EnsemblBacteria" id="ABX37486">
        <property type="protein sequence ID" value="ABX37486"/>
        <property type="gene ID" value="Daci_4857"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_4857"/>
    <dbReference type="eggNOG" id="ENOG50348ZG">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_176858_0_0_4"/>
    <dbReference type="OMA" id="EPRYIRR"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="72"/>
            <end position="108"/>
        </location>
    </feature>
    <feature type="coiled-coil region" evidence="1">
        <location>
            <begin position="45"/>
            <end position="72"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ABX37486.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="108" mass="12192" checksum="DCCED7F872653ED0" modified="2008-01-15" version="1">MFFSKIFGASLAEPRYIRRTRAYLQEARMAMLEHTIAAEYYKSSADMYAERAARLEEELRAWEEGVEQSRAAHVSRRAHARHSKPVTVEPAATPSPPNTPTVGMVRAA</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="86" xmlns="http://uniprot.org/uniprot">
    <accession>A9BME4</accession>
    <name>A9BME4_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="6">Transcriptional regulator, IclR family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ordered locus">Daci_4860</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="7" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX37489.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012206659.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_4860"/>
    <dbReference type="PRIDE" id="A9BME4"/>
    <dbReference type="EnsemblBacteria" id="ABX37489">
        <property type="protein sequence ID" value="ABX37489"/>
        <property type="gene ID" value="Daci_4860"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_4860"/>
    <dbReference type="eggNOG" id="COG1414">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_062618_6_0_4"/>
    <dbReference type="OMA" id="YIERTYS"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006355">
        <property type="term" value="P:regulation of transcription, DNA-templated"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.450.40">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029016">
        <property type="entry name" value="GAF-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014757">
        <property type="entry name" value="Tscrpt_reg_IclR_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005471">
        <property type="entry name" value="Tscrpt_reg_IclR_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036390">
        <property type="entry name" value="WH_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF09339">
        <property type="entry name" value="HTH_IclR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01614">
        <property type="entry name" value="IclR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00346">
        <property type="entry name" value="HTH_ICLR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46785">
        <property type="entry name" value="SSF46785"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51077">
        <property type="entry name" value="HTH_ICLR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51078">
        <property type="entry name" value="ICLR_ED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0804">Transcription</keyword>
    <keyword evidence="1" id="KW-0805">Transcription regulation</keyword>
    <feature type="domain" description="HTH iclR-type" evidence="4">
        <location>
            <begin position="14"/>
            <end position="75"/>
        </location>
    </feature>
    <feature type="domain" description="IclR-ED" evidence="5">
        <location>
            <begin position="76"/>
            <end position="256"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="3">
        <location>
            <begin position="255"/>
            <end position="274"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023015"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023163"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="PROSITE" id="PS51077"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="PROSITE" id="PS51078"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="ABX37489.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="274" mass="30185" checksum="3B9F6DA7880B356A" modified="2008-01-15" version="1">MKKNDNAASPKPSVQVLERMFTLIDVLASREEAVSLKEISERTGLHPSTTHRILNDLAIGRFVDRPESGSYRLGMRFLELGNLVKARLSVREAALIPMRQLHKQIQQPVSLSVRQGDEIVYVERAYSERSGMQVVRAIGGHAPLHLTSNGKLFLAADDAQQVRAYATRTGLPGKTHFSITRLADMENELDKVRHHGVARDNEELELGVRCMAAGIYDDQGKLVAGLSISAPADRLDESWMSKLQSTAQEISSALGFNATRPAAPPPNPYARSSH</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="91" xmlns="http://uniprot.org/uniprot">
    <accession>A9BMG9</accession>
    <name>A9BMG9_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="3 12">GTP 3',8-cyclase</fullName>
            <ecNumber evidence="3 12">4.1.99.22</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="12">Molybdenum cofactor biosynthesis protein A</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="12" type="primary">moaA</name>
        <name evidence="14" type="ordered locus">Daci_4885</name>
    </gene>
    <organism evidence="14 15">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="14 15" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="15">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="15" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="15">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="12">Catalyzes the cyclization of GTP to (8S)-3',8-cyclo-7,8-dihydroguanosine 5'-triphosphate.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1 12">
            <text>AH2 + GTP + S-adenosyl-L-methionine = (8S)-3',8-cyclo-7,8-dihydroguanosine 5'-triphosphate + 5'-deoxyadenosine + A + H(+) + L-methionine</text>
            <dbReference type="Rhea" id="RHEA:49576"/>
            <dbReference type="ChEBI" id="CHEBI:13193"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:17319"/>
            <dbReference type="ChEBI" id="CHEBI:17499"/>
            <dbReference type="ChEBI" id="CHEBI:37565"/>
            <dbReference type="ChEBI" id="CHEBI:57844"/>
            <dbReference type="ChEBI" id="CHEBI:59789"/>
            <dbReference type="ChEBI" id="CHEBI:131766"/>
            <dbReference type="EC" id="4.1.99.22"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="12">
            <name>[4Fe-4S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:49883"/>
        </cofactor>
        <text evidence="12">Binds 2 [4Fe-4S] clusters. Binds 1 [4Fe-4S] cluster coordinated with 3 cysteines and an exchangeable S-adenosyl-L-methionine and 1 [4Fe-4S] cluster coordinated with 3 cysteines and the GTP-derived substrate.</text>
    </comment>
    <comment type="pathway">
        <text evidence="2 12">Cofactor biosynthesis; molybdopterin biosynthesis.</text>
    </comment>
    <comment type="subunit">
        <text evidence="12">Monomer and homodimer.</text>
    </comment>
    <comment type="similarity">
        <text evidence="12">Belongs to the radical SAM superfamily. MoaA family.</text>
    </comment>
    <dbReference type="EC" id="4.1.99.22" evidence="3 12"/>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX37514.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012206684.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_4885"/>
    <dbReference type="PRIDE" id="A9BMG9"/>
    <dbReference type="EnsemblBacteria" id="ABX37514">
        <property type="protein sequence ID" value="ABX37514"/>
        <property type="gene ID" value="Daci_4885"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_4885"/>
    <dbReference type="eggNOG" id="COG2896">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_009273_0_1_4"/>
    <dbReference type="OMA" id="IEFMPIG"/>
    <dbReference type="UniPathway" id="UPA00344"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0019008">
        <property type="term" value="C:molybdopterin synthase complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051539">
        <property type="term" value="F:4 iron, 4 sulfur cluster binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0061798">
        <property type="term" value="F:GTP 3',8'-cyclase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005525">
        <property type="term" value="F:GTP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:1904047">
        <property type="term" value="F:S-adenosyl-L-methionine binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006777">
        <property type="term" value="P:Mo-molybdopterin cofactor biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.20.20.70">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01225_B">
        <property type="entry name" value="MoaA_B"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013785">
        <property type="entry name" value="Aldolase_TIM"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006638">
        <property type="entry name" value="Elp3/MiaB/NifB"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013483">
        <property type="entry name" value="MoaA"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000385">
        <property type="entry name" value="MoaA_NifB_PqqE_Fe-S-bd_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010505">
        <property type="entry name" value="Mob_synth_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007197">
        <property type="entry name" value="rSAM"/>
    </dbReference>
    <dbReference type="Pfam" id="PF06463">
        <property type="entry name" value="Mob_synth_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04055">
        <property type="entry name" value="Radical_SAM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SFLD" id="SFLDS00029">
        <property type="entry name" value="Radical_SAM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00729">
        <property type="entry name" value="Elp3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR02666">
        <property type="entry name" value="moaA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01305">
        <property type="entry name" value="MOAA_NIFB_PQQE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51918">
        <property type="entry name" value="RADICAL_SAM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="12" id="KW-0004">4Fe-4S</keyword>
    <keyword evidence="9 12" id="KW-0342">GTP-binding</keyword>
    <keyword evidence="7 12" id="KW-0408">Iron</keyword>
    <keyword evidence="8 12" id="KW-0411">Iron-sulfur</keyword>
    <keyword evidence="11 12" id="KW-0456">Lyase</keyword>
    <keyword evidence="5 12" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="10 12" id="KW-0501">Molybdenum cofactor biosynthesis</keyword>
    <keyword evidence="6 12" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="15" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4 12" id="KW-0949">S-adenosyl-L-methionine</keyword>
    <feature type="domain" description="Radical SAM core" evidence="13">
        <location>
            <begin position="34"/>
            <end position="267"/>
        </location>
    </feature>
    <feature type="binding site" evidence="12">
        <location>
            <position position="43"/>
        </location>
        <ligand>
            <name>GTP</name>
            <dbReference type="ChEBI" id="CHEBI:37565"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="12">
        <location>
            <position position="50"/>
        </location>
        <ligand>
            <name>[4Fe-4S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:49883"/>
            <label>1</label>
            <note>4Fe-4S-S-AdoMet</note>
        </ligand>
    </feature>
    <feature type="binding site" evidence="12">
        <location>
            <position position="54"/>
        </location>
        <ligand>
            <name>[4Fe-4S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:49883"/>
            <label>1</label>
            <note>4Fe-4S-S-AdoMet</note>
        </ligand>
    </feature>
    <feature type="binding site" evidence="12">
        <location>
            <position position="56"/>
        </location>
        <ligand>
            <name>S-adenosyl-L-methionine</name>
            <dbReference type="ChEBI" id="CHEBI:59789"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="12">
        <location>
            <position position="57"/>
        </location>
        <ligand>
            <name>[4Fe-4S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:49883"/>
            <label>1</label>
            <note>4Fe-4S-S-AdoMet</note>
        </ligand>
    </feature>
    <feature type="binding site" evidence="12">
        <location>
            <position position="97"/>
        </location>
        <ligand>
            <name>GTP</name>
            <dbReference type="ChEBI" id="CHEBI:37565"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="12">
        <location>
            <position position="101"/>
        </location>
        <ligand>
            <name>S-adenosyl-L-methionine</name>
            <dbReference type="ChEBI" id="CHEBI:59789"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="12">
        <location>
            <position position="132"/>
        </location>
        <ligand>
            <name>GTP</name>
            <dbReference type="ChEBI" id="CHEBI:37565"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="12">
        <location>
            <position position="156"/>
        </location>
        <ligand>
            <name>S-adenosyl-L-methionine</name>
            <dbReference type="ChEBI" id="CHEBI:59789"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="12">
        <location>
            <position position="194"/>
        </location>
        <ligand>
            <name>GTP</name>
            <dbReference type="ChEBI" id="CHEBI:37565"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="12">
        <location>
            <position position="228"/>
        </location>
        <ligand>
            <name>S-adenosyl-L-methionine</name>
            <dbReference type="ChEBI" id="CHEBI:59789"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="12">
        <location>
            <position position="299"/>
        </location>
        <ligand>
            <name>[4Fe-4S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:49883"/>
            <label>2</label>
            <note>4Fe-4S-substrate</note>
        </ligand>
    </feature>
    <feature type="binding site" evidence="12">
        <location>
            <position position="302"/>
        </location>
        <ligand>
            <name>[4Fe-4S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:49883"/>
            <label>2</label>
            <note>4Fe-4S-substrate</note>
        </ligand>
    </feature>
    <feature type="binding site" evidence="12">
        <location>
            <begin position="304"/>
            <end position="306"/>
        </location>
        <ligand>
            <name>GTP</name>
            <dbReference type="ChEBI" id="CHEBI:37565"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="12">
        <location>
            <position position="316"/>
        </location>
        <ligand>
            <name>[4Fe-4S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:49883"/>
            <label>2</label>
            <note>4Fe-4S-substrate</note>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00000034"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00005046"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00012167"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022691"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023004"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00023014"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00023134"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00023150"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="ARBA" id="ARBA00023239"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="12">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01225"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="13">
        <source>
            <dbReference type="PROSITE" id="PS51918"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="14">
        <source>
            <dbReference type="EMBL" id="ABX37514.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="15">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="378" mass="41510" checksum="EC57EC349F4802D4" modified="2008-01-15" version="1">MAERVIPLVDERAPTRPAAVPSLLQTPTGDLQDRLGRSLRDLRISITDRCNFRCSYCMPKEVFDKNYSYLPHGSLLSFEEITRTARLFVQHGVQKIRLTGGEPLLRKNVETLVEQLSALRTPGGQPLDLTLTTNGSLLARKARALKDAGLNRVTVSLDGLDDAVFRSMNDVDFPVSDVLAGIEAAQAAGLTNIKVNMVVKRGTNEDQILPMARHFQGTGVTLRFIEYMDVGATNGWRMDEVLPSDEVIARLRAELPLVPLQPSATGETAVRWGYADARGLHDPSLGEVGVISSVTHAFCGDCNRARLSTEGRLYLCLFASEGWDLRSLLRSGASDAEVASALAPIWQQRSDRYSELRASLPASTGTQRRRIEMSYIGG</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="68" xmlns="http://uniprot.org/uniprot">
    <accession>A9BN71</accession>
    <name>A9BN71_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Efflux transporter, RND family, MFP subunit</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ordered locus">Daci_5137</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="6" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX37766.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012206936.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_5137"/>
    <dbReference type="PRIDE" id="A9BN71"/>
    <dbReference type="EnsemblBacteria" id="ABX37766">
        <property type="protein sequence ID" value="ABX37766"/>
        <property type="gene ID" value="Daci_5137"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_5137"/>
    <dbReference type="eggNOG" id="COG0845">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_018816_2_1_4"/>
    <dbReference type="OMA" id="RASILIK"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0022857">
        <property type="term" value="F:transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR032317">
        <property type="entry name" value="HlyD_D23"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006143">
        <property type="entry name" value="RND_pump_MFP"/>
    </dbReference>
    <dbReference type="Pfam" id="PF16576">
        <property type="entry name" value="HlyD_D23"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01730">
        <property type="entry name" value="RND_mfp"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-0472">Membrane</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="3" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="3">
        <location>
            <begin position="21"/>
            <end position="44"/>
        </location>
    </feature>
    <feature type="domain" description="HlyD_D23" evidence="4">
        <location>
            <begin position="88"/>
            <end position="317"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="404"/>
            <end position="427"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00009477"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="Pfam" id="PF16576"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="ABX37766.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="427" mass="45003" checksum="E2287E67C0C8781C" modified="2008-01-15" version="1">MSTESTSSSSSPSFASAPRKGWRLPAAAAAILAVSAGLFGLHGFDAKADDAPASAQPAATPVSVATVAESEVTAWDEFSGRLEAVERVDIRSRVAGAVQAVHFREGALVKQGDLLITIDPAPYAAEVERAEAQVASAQARQSYARSEQERARRLWDERAIAQRELDERINAGSEAEANLRAAQASLQSARLNLGYTQVRAPVSGRIGKREITVGNLVAAGPGAPVLTTLVSVSPIYASFDADEQVITRALKELGGGAGNRARIDSIPVQMGTATAGSTPFEGRLQLIDNQVDARSGTVRVRAAFDNKDGALMPGQFARIRMGQARDSSMLLVSERAIGTDQSKKYVMVVGDDNKAVYREVALGASVNGLRNVTQGLQPGERVVVNGLQHIRPGALVAPKEVSMDARADARQPGTRQAAEQVADATKS</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="63" xmlns="http://uniprot.org/uniprot">
    <accession>A9BPD5</accession>
    <name>A9BPD5_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">N-formylglutamate amidohydrolase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_0156</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX32802.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012202095.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_0156"/>
    <dbReference type="PRIDE" id="A9BPD5"/>
    <dbReference type="EnsemblBacteria" id="ABX32802">
        <property type="protein sequence ID" value="ABX32802"/>
        <property type="gene ID" value="Daci_0156"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_0156"/>
    <dbReference type="eggNOG" id="COG3741">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_069318_0_0_4"/>
    <dbReference type="OMA" id="WHIPQLY"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016787">
        <property type="term" value="F:hydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010247">
        <property type="entry name" value="HutG_amidohyd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007709">
        <property type="entry name" value="N-FG_amidohydro"/>
    </dbReference>
    <dbReference type="Pfam" id="PF05013">
        <property type="entry name" value="FGase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR02017">
        <property type="entry name" value="hutG_amidohyd"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="21"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="1"/>
            <end position="18"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX32802.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="287" mass="31582" checksum="E01496E6F2E7D4BA" modified="2008-01-15" version="1">MGPQNPPETFQNHTMTDTAPPPFVFHQGTAPLLISMPHAGTHVPPDIAARLTEEARHVPDTDWHLPRLYEFAKAMGASILVATHSRYVVDLNRPPDGASLYPGQSVTGLCPVDTFDDTPLYADPADVPTDAEIAARREAIWGPYHAQLRAELDRLKAVHGTVALWDAHSIRSVLPRFFEGKLPDLNLGTGKGTSCALELAEHLLAIAQTTPGHTAILNGRFTGGYITRHYGQPEAGIHAVQLEMTQCSYMQEALPFDYLPERAEQIQPTLQRMLQAVLDFVTTRRVS</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="63" xmlns="http://uniprot.org/uniprot">
    <accession>A9BPL4</accession>
    <name>A9BPL4_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Glycerophosphoryl diester phosphodiesterase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Daci_0235</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="4" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX32881.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_0235"/>
    <dbReference type="PRIDE" id="A9BPL4"/>
    <dbReference type="EnsemblBacteria" id="ABX32881">
        <property type="protein sequence ID" value="ABX32881"/>
        <property type="gene ID" value="Daci_0235"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_0235"/>
    <dbReference type="eggNOG" id="COG0584">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_030226_0_1_4"/>
    <dbReference type="OMA" id="CRHENDI"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008081">
        <property type="term" value="F:phosphoric diester hydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006629">
        <property type="term" value="P:lipid metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.20.20.190">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR030395">
        <property type="entry name" value="GP_PDE_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017946">
        <property type="entry name" value="PLC-like_Pdiesterase_TIM-brl"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03009">
        <property type="entry name" value="GDPD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51695">
        <property type="entry name" value="SSF51695"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51704">
        <property type="entry name" value="GP_PDE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="1">
        <location>
            <begin position="1"/>
            <end position="27"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5002735661" evidence="1">
        <location>
            <begin position="28"/>
            <end position="452"/>
        </location>
    </feature>
    <feature type="domain" description="GP-PDE" evidence="2">
        <location>
            <begin position="42"/>
            <end position="443"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS51704"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ABX32881.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="452" mass="49273" checksum="039CBA3DF5D0F206" modified="2008-01-15" version="1">MTQRPMSFSRTPLLASLCAAAVLTACGGDGGSFYLTLDGKQPQVIAHRGFSGKFPEQTRMAYEAAADAGADMLELDMHMTKDCQLVARHNAWLSDSTNVADVAKTNAEVARRQRTAAGVLVNVKYPAIPANGPAQYLSDQLDANDPKSVLKALVVDGEDHRNDWSISDFTLQELRSWLTGTILDNRSERPTEWNGKLPLISAQDVLDIAAAKSKALGRTIPVYAETKNPYWNNQQAIANGCGAPGSRPFEDAVIKLLDQNKLNAKDSPIYIQSFDPASLKYLRQAGMKAKGVQLIDGNDFSLRDGSMVYITNDEWTFISGRPYSWTLAGDARTFAAMLTPAGLADIKTYADGIGPWKPQVLAHSVVPYKDGAGLKDVNTVKDTGLIRDAHKAGLIVHSFTFRNEPGRLAGLYKGDPVQEYLTYYRLGIDGVFTDFTDTAVAARKAYNKEIGL</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="63" xmlns="http://uniprot.org/uniprot">
    <accession>A9BPN7</accession>
    <name>A9BPN7_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="6">Extracellular solute-binding protein family 3</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ordered locus">Daci_0360</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="7" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1 3">Belongs to the bacterial solute-binding protein 3 family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX33006.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012202299.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_0360"/>
    <dbReference type="PRIDE" id="A9BPN7"/>
    <dbReference type="EnsemblBacteria" id="ABX33006">
        <property type="protein sequence ID" value="ABX33006"/>
        <property type="gene ID" value="Daci_0360"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_0360"/>
    <dbReference type="eggNOG" id="COG0834">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_019602_18_5_4"/>
    <dbReference type="OMA" id="FSEEPYG"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018313">
        <property type="entry name" value="SBP_3_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001638">
        <property type="entry name" value="Solute-binding_3/MltF_N"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00497">
        <property type="entry name" value="SBP_bac_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00062">
        <property type="entry name" value="PBPb"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01039">
        <property type="entry name" value="SBP_BACTERIAL_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 4" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="4">
        <location>
            <begin position="1"/>
            <end position="22"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5002735664" evidence="4">
        <location>
            <begin position="23"/>
            <end position="256"/>
        </location>
    </feature>
    <feature type="domain" description="PBPb" evidence="5">
        <location>
            <begin position="33"/>
            <end position="251"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00010333"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022729"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="RuleBase" id="RU003744"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="SMART" id="SM00062"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="ABX33006.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="256" mass="28507" checksum="9EA3A3DB272DDE9D" modified="2008-01-15" version="1">MKRFTVIAAAALALWTAAGVQARPFEAIQKEGTLRLATEGYYAPFAHFEGKQLTGFEVELAQMMAAKMGVKYEWKTISFDALLTGLQQDRWDLVISSHGITPEREKAVTFTQPHYCSGAIVMSLDPAIRSAKDLAGKTVSVQTGTTYMQYMEKNLPGIKRLVNFPTNEAARNALLSKRVDAWVTERFIAKELQQKNPNAQLKQGELLLVERIAAAVAKDNKSLADAWNKAFKEALADGSYAKLSQKYFHEDIRCPD</sequence>
</entry>
<entry dataset="Swiss-Prot" created="2009-04-14" modified="2022-08-03" version="74" xmlns="http://uniprot.org/uniprot">
    <accession>A9BPS2</accession>
    <name>RS19_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">30S ribosomal protein S19</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="1" type="primary">rpsS</name>
        <name type="ordered locus">Daci_0395</name>
    </gene>
    <organism>
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference key="1">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain>DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="1">Protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA.</text>
    </comment>
    <comment type="similarity">
        <text evidence="1">Belongs to the universal ribosomal protein uS19 family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX33041.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012202333.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A9BPS2"/>
    <dbReference type="SMR" id="A9BPS2"/>
    <dbReference type="STRING" id="398578.Daci_0395"/>
    <dbReference type="PRIDE" id="A9BPS2"/>
    <dbReference type="EnsemblBacteria" id="ABX33041">
        <property type="protein sequence ID" value="ABX33041"/>
        <property type="gene ID" value="Daci_0395"/>
    </dbReference>
    <dbReference type="GeneID" id="60690802"/>
    <dbReference type="KEGG" id="dac:Daci_0395"/>
    <dbReference type="eggNOG" id="COG0185">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_144911_0_1_4"/>
    <dbReference type="OMA" id="FPEMVGH"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015935">
        <property type="term" value="C:small ribosomal subunit"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0019843">
        <property type="term" value="F:rRNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003735">
        <property type="term" value="F:structural constituent of ribosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006412">
        <property type="term" value="P:translation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.860.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00531">
        <property type="entry name" value="Ribosomal_S19"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020934">
        <property type="entry name" value="Ribosomal_S15/S19_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002222">
        <property type="entry name" value="Ribosomal_S19"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005732">
        <property type="entry name" value="Ribosomal_S19_bac-type"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023575">
        <property type="entry name" value="Ribosomal_S19_S15_SF"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11880">
        <property type="entry name" value="PTHR11880"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00203">
        <property type="entry name" value="Ribosomal_S19"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF002144">
        <property type="entry name" value="Ribosomal_S19"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00975">
        <property type="entry name" value="RIBOSOMALS19"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54570">
        <property type="entry name" value="SSF54570"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01050">
        <property type="entry name" value="rpsS_bact"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00323">
        <property type="entry name" value="RIBOSOMAL_S19"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword id="KW-1185">Reference proteome</keyword>
    <keyword id="KW-0687">Ribonucleoprotein</keyword>
    <keyword id="KW-0689">Ribosomal protein</keyword>
    <keyword id="KW-0694">RNA-binding</keyword>
    <keyword id="KW-0699">rRNA-binding</keyword>
    <feature type="chain" id="PRO_1000127961" description="30S ribosomal protein S19">
        <location>
            <begin position="1"/>
            <end position="91"/>
        </location>
    </feature>
    <evidence type="ECO:0000255" key="1">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00531"/>
        </source>
    </evidence>
    <sequence length="91" mass="10214" checksum="004520DB72BB85CB" modified="2008-01-15" version="1">MTRSLKKGPFVDHHLLAKAEKAVATKDKKPVKTWSRRSMVLPEFIGLTIAVHNGKQHVPVYVTDQMVGHKLGEFALTRTFKGHPADKKAKK</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="89" xmlns="http://uniprot.org/uniprot">
    <accession>A9BPZ6</accession>
    <name>A9BPZ6_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="9">Primosomal protein N'</fullName>
            <ecNumber evidence="9">3.6.4.-</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="9">ATP-dependent helicase PriA</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="9" type="primary">priA</name>
        <name evidence="12" type="ordered locus">Daci_0565</name>
    </gene>
    <organism evidence="12 13">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="12 13" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="13">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="13" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="13">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="9">Involved in the restart of stalled replication forks. Recognizes and binds the arrested nascent DNA chain at stalled replication forks. It can open the DNA duplex, via its helicase activity, and promote assembly of the primosome and loading of the major replicative helicase DnaB onto DNA.</text>
    </comment>
    <comment type="subunit">
        <text evidence="9">Component of the primosome.</text>
    </comment>
    <comment type="similarity">
        <text evidence="9">Belongs to the helicase family. PriA subfamily.</text>
    </comment>
    <dbReference type="EC" id="3.6.4.-" evidence="9"/>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX33211.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_0565"/>
    <dbReference type="PRIDE" id="A9BPZ6"/>
    <dbReference type="EnsemblBacteria" id="ABX33211">
        <property type="protein sequence ID" value="ABX33211"/>
        <property type="gene ID" value="Daci_0565"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_0565"/>
    <dbReference type="eggNOG" id="COG1198">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_013353_4_0_4"/>
    <dbReference type="OMA" id="RCHYCGY"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:1990077">
        <property type="term" value="C:primosome complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003678">
        <property type="term" value="F:DNA helicase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016787">
        <property type="term" value="F:hydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008270">
        <property type="term" value="F:zinc ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006269">
        <property type="term" value="P:DNA replication, synthesis of RNA primer"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006268">
        <property type="term" value="P:DNA unwinding involved in DNA replication"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.1440.60">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00983">
        <property type="entry name" value="PriA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011545">
        <property type="entry name" value="DEAD/DEAH_box_helicase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014001">
        <property type="entry name" value="Helicase_ATP-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001650">
        <property type="entry name" value="Helicase_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005259">
        <property type="entry name" value="PriA"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041222">
        <property type="entry name" value="PriA_3primeBD"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR042115">
        <property type="entry name" value="PriA_3primeBD_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041236">
        <property type="entry name" value="PriA_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR040498">
        <property type="entry name" value="PriA_CRR"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00270">
        <property type="entry name" value="DEAD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00271">
        <property type="entry name" value="Helicase_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF17764">
        <property type="entry name" value="PriA_3primeBD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF18074">
        <property type="entry name" value="PriA_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF18319">
        <property type="entry name" value="PriA_CRR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00487">
        <property type="entry name" value="DEXDc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00490">
        <property type="entry name" value="HELICc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00595">
        <property type="entry name" value="priA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51192">
        <property type="entry name" value="HELICASE_ATP_BIND_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="7 9" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="2 9" id="KW-0235">DNA replication</keyword>
    <keyword evidence="8 9" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="6 9" id="KW-0347">Helicase</keyword>
    <keyword evidence="5 9" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="3 9" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="4 9" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="1 9" id="KW-0639">Primosome</keyword>
    <keyword evidence="13" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="9" id="KW-0862">Zinc</keyword>
    <keyword evidence="9" id="KW-0863">Zinc-finger</keyword>
    <feature type="domain" description="Helicase ATP-binding" evidence="11">
        <location>
            <begin position="206"/>
            <end position="379"/>
        </location>
    </feature>
    <feature type="zinc finger region" description="C4-type" evidence="9">
        <location>
            <begin position="446"/>
            <end position="458"/>
        </location>
    </feature>
    <feature type="zinc finger region" description="C4-type" evidence="9">
        <location>
            <begin position="473"/>
            <end position="489"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="10">
        <location>
            <begin position="156"/>
            <end position="179"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022515"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022705"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022806"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00983"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="11">
        <source>
            <dbReference type="PROSITE" id="PS51192"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="EMBL" id="ABX33211.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="13">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="762" mass="82964" checksum="CA4EC6B2B10DF0A8" modified="2008-01-15" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="78" xmlns="http://uniprot.org/uniprot">
    <accession>A9BQ83</accession>
    <name>A9BQ83_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Response regulator receiver sensor signal transduction histidine kinase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ordered locus">Daci_0652</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="5" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX33298.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012202584.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_0652"/>
    <dbReference type="PRIDE" id="A9BQ83"/>
    <dbReference type="EnsemblBacteria" id="ABX33298">
        <property type="protein sequence ID" value="ABX33298"/>
        <property type="gene ID" value="Daci_0652"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_0652"/>
    <dbReference type="eggNOG" id="COG0784">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="eggNOG" id="COG4585">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_000445_114_0_4"/>
    <dbReference type="OMA" id="DQYMPGL"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000155">
        <property type="term" value="F:phosphorelay sensor kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046983">
        <property type="term" value="F:protein dimerization activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.565.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011006">
        <property type="entry name" value="CheY-like_superfamily"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036890">
        <property type="entry name" value="HATPase_C_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011712">
        <property type="entry name" value="Sig_transdc_His_kin_sub3_dim/P"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001789">
        <property type="entry name" value="Sig_transdc_resp-reg_receiver"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07730">
        <property type="entry name" value="HisKA_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00072">
        <property type="entry name" value="Response_reg"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00448">
        <property type="entry name" value="REC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52172">
        <property type="entry name" value="SSF52172"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55874">
        <property type="entry name" value="SSF55874"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50110">
        <property type="entry name" value="RESPONSE_REGULATORY"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="4" id="KW-0418">Kinase</keyword>
    <keyword evidence="1" id="KW-0597">Phosphoprotein</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Response regulatory" evidence="3">
        <location>
            <begin position="22"/>
            <end position="138"/>
        </location>
    </feature>
    <feature type="coiled-coil region" evidence="2">
        <location>
            <begin position="146"/>
            <end position="173"/>
        </location>
    </feature>
    <feature type="modified residue" description="4-aspartylphosphate" evidence="1">
        <location>
            <position position="73"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00169"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="PROSITE" id="PS50110"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="ABX33298.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="382" mass="41473" checksum="AA68489A986FDE22" modified="2008-01-15" version="1">MFQNVSHDSAPGDARPPHKPLRILHIEDSAADQALARLSLLRGGLVCEIVAVDLLDDAAAALQSQAFDLILADYHLPGFTALDAWELVRRQPGHPPFVLLSGAIGESAAVDVMREGISDYLLKDHITRLPHVVSHALEVHEARLARRRAAAELAASERRLADLTEHLQTSTERERASIAREIHDDIGGSLTSVKFDVAWIARNAPEGGLREHALAALEMLEHALGASQRIMMNLRPPVLDQGLVAAVQWLAENFERRTGVPTRVRSSRESMDIAPDIQVVAYRTAQEALTNVGKYAQARHVDIDLSDREGFLTLEVTDDGVGLAEGARDKPESFGLRGLGERARTVRGWLDVSSQAGRGTSVIVSIPLDDGGTCPNIPGNEC</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="62" xmlns="http://uniprot.org/uniprot">
    <accession>A9BQ84</accession>
    <name>A9BQ84_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ordered locus">Daci_0848</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="5" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the carbon-nitrogen hydrolase superfamily. NIT1/NIT2 family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX33494.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012202780.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_0848"/>
    <dbReference type="PRIDE" id="A9BQ84"/>
    <dbReference type="EnsemblBacteria" id="ABX33494">
        <property type="protein sequence ID" value="ABX33494"/>
        <property type="gene ID" value="Daci_0848"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_0848"/>
    <dbReference type="eggNOG" id="COG0388">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_030130_1_2_4"/>
    <dbReference type="OMA" id="GNTYRES"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016746">
        <property type="term" value="F:acyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016811">
        <property type="term" value="F:hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006807">
        <property type="term" value="P:nitrogen compound metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd07572">
        <property type="entry name" value="nit"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.60.110.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003010">
        <property type="entry name" value="C-N_Hydrolase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036526">
        <property type="entry name" value="C-N_Hydrolase_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045254">
        <property type="entry name" value="Nit1/2_C-N_Hydrolase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001110">
        <property type="entry name" value="UPF0012_CS"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00795">
        <property type="entry name" value="CN_hydrolase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56317">
        <property type="entry name" value="SSF56317"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50263">
        <property type="entry name" value="CN_HYDROLASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01227">
        <property type="entry name" value="UPF0012"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-0012">Acyltransferase</keyword>
    <keyword evidence="2" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="4" id="KW-0449">Lipoprotein</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="CN hydrolase" evidence="3">
        <location>
            <begin position="1"/>
            <end position="253"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00010613"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="PROSITE" id="PS50263"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="ABX33494.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="271" mass="30215" checksum="95406A66CD04E389" modified="2008-01-15" version="1">MKIAALQMVSEPDVRANLDQALALLRQARDQGAELAALPEYFCAMGLRDTDKLAYRESFGAGPIQDFLRRAARELQLWIVGGTLPLVADDDAHVLNSSLVFSPEGECVARYDKIHLFHYDNGRERYTEAAVVQAGHTPVTCDITSREGETWRLGLSVCYDLRFPELYRRLAEQGADLLLVPAAFTHITGLAHWEVLLRARAIENQAYLLAPAQGGHHENGRRTWGHSLLADPWGMVLAQQAEGAGVVLGEIKRERLAHVRRQLPALEHRVL</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="69" xmlns="http://uniprot.org/uniprot">
    <accession>A9BQH9</accession>
    <name>A9BQH9_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Amidohydrolase</fullName>
            <ecNumber evidence="3">3.5.1.32</ecNumber>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Daci_0943</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="4" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EC" id="3.5.1.32" evidence="3"/>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX33589.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_0943"/>
    <dbReference type="PRIDE" id="A9BQH9"/>
    <dbReference type="EnsemblBacteria" id="ABX33589">
        <property type="protein sequence ID" value="ABX33589"/>
        <property type="gene ID" value="Daci_0943"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_0943"/>
    <dbReference type="eggNOG" id="COG1473">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_023257_1_1_4"/>
    <dbReference type="OMA" id="HAGHAPN"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0047980">
        <property type="term" value="F:hippurate hydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017439">
        <property type="entry name" value="Amidohydrolase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036264">
        <property type="entry name" value="Bact_exopeptidase_dim_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002933">
        <property type="entry name" value="Peptidase_M20"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011650">
        <property type="entry name" value="Peptidase_M20_dimer"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11014">
        <property type="entry name" value="PTHR11014"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07687">
        <property type="entry name" value="M20_dimer"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01546">
        <property type="entry name" value="Peptidase_M20"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF005962">
        <property type="entry name" value="Pept_M20D_amidohydro"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55031">
        <property type="entry name" value="SSF55031"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01891">
        <property type="entry name" value="amidohydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1 3" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="M20_dimer" evidence="2">
        <location>
            <begin position="200"/>
            <end position="295"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF07687"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ABX33589.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="417" mass="45131" checksum="F691015CD6C3247C" modified="2008-01-15" version="1">MGRLRPETALPHLIESFADMAPFVALRRDLHAHPELGFEEHRTSAIVAERLASWGVEVHTGLAGTGVVGVVHGRHTDARHGTRTIGLRADLDALPLQEENRFAHRSQHAGRMHACGHDGHTTMLLAAAWHLARTRDFAGTVHLIFQPAEEMGKAGARRMIDEGLFERFPCDAVFALHNFALDRVGSFALNPGALMASSNTFRIVLHGQGTHASLPHTGIDPVAATIDLAQQLQTLVARHVDSRERALLAVTQIQGSDAPNVIPDSAWVGGTVRTFSVAALDILESALRRQAEHTALAHGCRAEIHFRRASPPLVNHAAEAAFAAAVMREIAGDDAVDTQFPGVLAAEDFAHMLQARPGCYAFIGNGQGAHRLPGHGDGPCLIHNRSYDFNDDILAIGASYFVRLVERWLAVTQETSP</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="62" xmlns="http://uniprot.org/uniprot">
    <accession>A9BQK7</accession>
    <name>A9BQK7_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="1">L-carnitine dehydratase/bile acid-inducible protein F</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Daci_0062</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="2" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX32709.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012202002.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_0062"/>
    <dbReference type="PRIDE" id="A9BQK7"/>
    <dbReference type="EnsemblBacteria" id="ABX32709">
        <property type="protein sequence ID" value="ABX32709"/>
        <property type="gene ID" value="Daci_0062"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_0062"/>
    <dbReference type="eggNOG" id="COG1804">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_033975_0_0_4"/>
    <dbReference type="OMA" id="CAKVLTW"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003824">
        <property type="term" value="F:catalytic activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.1540.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.10540">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003673">
        <property type="entry name" value="CoA-Trfase_fam_III"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR044855">
        <property type="entry name" value="CoA-Trfase_III_dom3_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023606">
        <property type="entry name" value="CoA-Trfase_III_dom_1_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02515">
        <property type="entry name" value="CoA_transf_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF89796">
        <property type="entry name" value="SSF89796"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ABX32709.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="402" mass="43559" checksum="BC3290C303E4DF13" modified="2008-01-15" version="1">MSALPSSLPLDGVRVLDLSRVLAGPMCAMALADLGADVVKVEHPGRGDDTRDWGVRVGQRNTSYFNSANRNKRSVTLDLQAEEGLRIARELAADSDVVIQNFKVGGAEKLGLGYEQLSQLNPRLVYCSISGYSRSGPEATRPGYDLVVQGESGIMAMNGEQGQGPLKFGVAAVDMFTGMYSAQAILAALYERERSGRGRHVQMALYDCGLMITSYYGMEALLKAGDPPKFGNAHPSIVPYGVFEAADGPLVITVGNNGQFQRFCTDVIAKPEWAADERFATNTARSANRELLMPLVQAELLRFTRAQLLECLTAAQIPCGEVLGLFEALNSQRTADAGLLHRFEDSEAGSQSVLAPPYALDGQRLPVRRPPPHQGEHTDEVLQQRLGLDEQARAALRAKNII</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="69" xmlns="http://uniprot.org/uniprot">
    <accession>A9BQL1</accession>
    <name>A9BQL1_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="4">Cobalamin adenosyltransferase</fullName>
            <ecNumber evidence="4">2.5.1.-</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="7" type="ordered locus">Daci_0066</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="8" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="4">
            <text>AH2 + 2 ATP + 2 cob(II)alamin = A + 2 adenosylcob(III)alamin + 2 H(+) + 2 triphosphate</text>
            <dbReference type="Rhea" id="RHEA:53304"/>
            <dbReference type="ChEBI" id="CHEBI:13193"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:16304"/>
            <dbReference type="ChEBI" id="CHEBI:17499"/>
            <dbReference type="ChEBI" id="CHEBI:18036"/>
            <dbReference type="ChEBI" id="CHEBI:18408"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </reaction>
    </comment>
    <comment type="similarity">
        <text evidence="4">Belongs to the Cob(I)alamin adenosyltransferase family.</text>
    </comment>
    <dbReference type="EC" id="2.5.1.-" evidence="4"/>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX32713.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012202006.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_0066"/>
    <dbReference type="PRIDE" id="A9BQL1"/>
    <dbReference type="EnsemblBacteria" id="ABX32713">
        <property type="protein sequence ID" value="ABX32713"/>
        <property type="gene ID" value="Daci_0066"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_0066"/>
    <dbReference type="eggNOG" id="COG2096">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_083486_0_1_4"/>
    <dbReference type="OMA" id="HQACTVV"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008817">
        <property type="term" value="F:cob(I)yrinic acid a,c-diamide adenosyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009236">
        <property type="term" value="P:cobalamin biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.1200.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016030">
        <property type="entry name" value="CblAdoTrfase-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036451">
        <property type="entry name" value="CblAdoTrfase-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029499">
        <property type="entry name" value="PduO-typ"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR12213">
        <property type="entry name" value="PTHR12213"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01923">
        <property type="entry name" value="Cob_adeno_trans"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF89028">
        <property type="entry name" value="SSF89028"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00636">
        <property type="entry name" value="PduO_Nterm"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3 4" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="4" id="KW-0169">Cobalamin biosynthesis</keyword>
    <keyword evidence="2 4" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1 4 7" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Cob_adeno_trans" evidence="6">
        <location>
            <begin position="8"/>
            <end position="165"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="5">
        <location>
            <begin position="1"/>
            <end position="37"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="5">
        <location>
            <begin position="1"/>
            <end position="30"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="RuleBase" id="RU366026"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="Pfam" id="PF01923"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="ABX32713.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="190" mass="21016" checksum="C7C8092DE9B0CD22" modified="2008-01-15" version="1">MGNRLTQIATRTGDDGSTGLGDNTRVSKNSGRPHAMGDVDELNSHIGLLLCEALPDEVRELLVDVQHQLFNLGGELSIPGYELLKDDALLQLDEALAHYNAQLPRLQEFILPAGSRAAAQAHVCRTVARRAERMVVALEQGEAMRPAPRQYLNRLSDLLFVLARVLNRMDGGDDVYWKSERMARAQSAEE</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="76" xmlns="http://uniprot.org/uniprot">
    <accession>A9BQP2</accession>
    <name>A9BQP2_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Transcriptional regulator, MarR family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_0098</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX32744.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012202037.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_0098"/>
    <dbReference type="PRIDE" id="A9BQP2"/>
    <dbReference type="EnsemblBacteria" id="ABX32744">
        <property type="protein sequence ID" value="ABX32744"/>
        <property type="gene ID" value="Daci_0098"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_0098"/>
    <dbReference type="eggNOG" id="COG1846">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_083287_8_1_4"/>
    <dbReference type="OMA" id="KMQQLTA"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003700">
        <property type="term" value="F:DNA-binding transcription factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0045892">
        <property type="term" value="P:negative regulation of transcription, DNA-templated"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012712">
        <property type="entry name" value="HpaR/FarR"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000835">
        <property type="entry name" value="HTH_MarR-typ"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036390">
        <property type="entry name" value="WH_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12802">
        <property type="entry name" value="MarR_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00598">
        <property type="entry name" value="HTHMARR"/>
    </dbReference>
    <dbReference type="SMART" id="SM00347">
        <property type="entry name" value="HTH_MARR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46785">
        <property type="entry name" value="SSF46785"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR02337">
        <property type="entry name" value="HpaR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50995">
        <property type="entry name" value="HTH_MARR_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HTH marR-type" evidence="1">
        <location>
            <begin position="21"/>
            <end position="154"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS50995"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX32744.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="166" mass="18675" checksum="592BDC8653C7BEEC" modified="2008-01-15" version="1">MLPNMPQTTTSFAPEPLRAFSRSLPMALLRARESVMVRFRPMLRAHGLTEQQWRVLRAMAAVTHRLRPMELSQATYISMPSLSRLLKTLEGRQLVERSRHASDMRGAEFELTAAGHAIVAEIAPHSSETYAEIERLVGHEEIEQLYALLDQVVQRLGAADGSQAEE</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="65" xmlns="http://uniprot.org/uniprot">
    <accession>A9BQV2</accession>
    <name>A9BQV2_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="7">Inner-membrane translocator</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ordered locus">Daci_0261</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="8" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX32907.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012202200.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_0261"/>
    <dbReference type="PRIDE" id="A9BQV2"/>
    <dbReference type="EnsemblBacteria" id="ABX32907">
        <property type="protein sequence ID" value="ABX32907"/>
        <property type="gene ID" value="Daci_0261"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_0261"/>
    <dbReference type="eggNOG" id="COG4177">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_031365_1_2_4"/>
    <dbReference type="OMA" id="IEMVTMA"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015658">
        <property type="term" value="F:branched-chain amino acid transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd06581">
        <property type="entry name" value="TM_PBP1_LivM_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001851">
        <property type="entry name" value="ABC_transp_permease"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043428">
        <property type="entry name" value="LivM-like"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30482">
        <property type="entry name" value="PTHR30482"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02653">
        <property type="entry name" value="BPD_transp_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="5 6" id="KW-0472">Membrane</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 6" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="4 6" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="9"/>
            <end position="25"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="31"/>
            <end position="50"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="57"/>
            <end position="77"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="83"/>
            <end position="104"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="111"/>
            <end position="128"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="160"/>
            <end position="180"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="210"/>
            <end position="235"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="247"/>
            <end position="272"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="284"/>
            <end position="303"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="ABX32907.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="324" mass="35213" checksum="901C32F08872B7CD" modified="2008-01-15" version="1">MNGFIDSRVAWGLLLAAGIAFPWLAGNDYHLTVMSTAYIFAIATLGLNLITGYTGQLNLAHAGFMAAGAYTVGILTVDHGWPFWGGLVMSGVVCAVLGYLIGIVSLRLKGHYFSIFTLCVGYIMFLVIEKWEGLTHGTVGIMGIPAPEALGALSFESPLALYYLVLAFLVASVWVMRRIVRSLLGRTFMAIRNSDELAEALGINLMRNKVLAFMLSVVYAGVAGGLYAGFVRFIGPDMAGVHHTFDMMIFAMVGGMGTVLGPLLGAIGMPWITQYLQFLQEYRFIVFGPILVMLVIFMPYGVVGSFTAWRARRNAKEGKPHAQD</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="80" xmlns="http://uniprot.org/uniprot">
    <accession>A9BR21</accession>
    <name>A9BR21_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Transcriptional regulator, AraC family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ordered locus">Daci_0330</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="5" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX32976.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012202269.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_0330"/>
    <dbReference type="PRIDE" id="A9BR21"/>
    <dbReference type="EnsemblBacteria" id="ABX32976">
        <property type="protein sequence ID" value="ABX32976"/>
        <property type="gene ID" value="Daci_0330"/>
    </dbReference>
    <dbReference type="GeneID" id="60690736"/>
    <dbReference type="KEGG" id="dac:Daci_0330"/>
    <dbReference type="eggNOG" id="COG0662">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="eggNOG" id="COG2207">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_000445_88_15_4"/>
    <dbReference type="OMA" id="YHPAYYS"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003700">
        <property type="term" value="F:DNA-binding transcription factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043565">
        <property type="term" value="F:sequence-specific DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.120.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009057">
        <property type="entry name" value="Homeobox-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018060">
        <property type="entry name" value="HTH_AraC"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014710">
        <property type="entry name" value="RmlC-like_jellyroll"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011051">
        <property type="entry name" value="RmlC_Cupin_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12833">
        <property type="entry name" value="HTH_18"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00342">
        <property type="entry name" value="HTH_ARAC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46689">
        <property type="entry name" value="SSF46689"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51182">
        <property type="entry name" value="SSF51182"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01124">
        <property type="entry name" value="HTH_ARAC_FAMILY_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0804">Transcription</keyword>
    <keyword evidence="1" id="KW-0805">Transcription regulation</keyword>
    <feature type="domain" description="HTH araC/xylS-type" evidence="3">
        <location>
            <begin position="146"/>
            <end position="242"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023015"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023163"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="PROSITE" id="PS01124"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="ABX32976.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="242" mass="25726" checksum="CF069FB2F261258B" modified="2008-01-15" version="1">MAYTLSSLHSDAAAQDGAADATDTAFAPHSSVRSYSGEHQAHAHGHAQILYALQGRMELEVGGRSAFVDAVSGMLIPAGVDHGYLAAPRSRVFVIDAPSGPGLDRMRRFSVPPALRGRESEGPATEQLAQVLQAPGLLARRGLDLQGLAAQVQAALHEDWPTARLAALCHMSAQRFHARFVELAGQPPQAWLRGLRLDAAERGLARGLPLEATALRCGYASASALAYALRRDRGVTARQLRG</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="37" xmlns="http://uniprot.org/uniprot">
    <accession>A9BR34</accession>
    <name>A9BR34_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Daci_0343</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="4" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX32989.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="PRIDE" id="A9BR34"/>
    <dbReference type="EnsemblBacteria" id="ABX32989">
        <property type="protein sequence ID" value="ABX32989"/>
        <property type="gene ID" value="Daci_0343"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_0343"/>
    <dbReference type="eggNOG" id="ENOG50346YM">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_138409_0_0_4"/>
    <dbReference type="OMA" id="WHGTRAL"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="2" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="55"/>
            <end position="74"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="95"/>
            <end position="116"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="136"/>
            <end position="153"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="24"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ABX32989.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="162" mass="16712" checksum="4F93EB01DD6AD5FC" modified="2008-01-15" version="1">MPCLEAAARATAPPSGSRPERAGGAKHGAATLAAAGTVPARSFLLMSSLSPHTCLQLSVAASALLVLASIGWVWHGTRALPADSRDGRSARCMAALFALGALAWLAYGLYTGYAVLWKADALMLFAQQGALLRLPFLIGGLAWVAALLVTRVLRMLGRAGSA</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="77" xmlns="http://uniprot.org/uniprot">
    <accession>A9BR90</accession>
    <name>A9BR90_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Transcriptional regulator, TetR family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ordered locus">Daci_0502</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="5" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX33148.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012202434.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_0502"/>
    <dbReference type="PRIDE" id="A9BR90"/>
    <dbReference type="EnsemblBacteria" id="ABX33148">
        <property type="protein sequence ID" value="ABX33148"/>
        <property type="gene ID" value="Daci_0502"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_0502"/>
    <dbReference type="eggNOG" id="COG1309">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_069356_12_3_4"/>
    <dbReference type="OMA" id="AVYWHFA"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023772">
        <property type="entry name" value="DNA-bd_HTH_TetR-type_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009057">
        <property type="entry name" value="Homeobox-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001647">
        <property type="entry name" value="HTH_TetR"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036271">
        <property type="entry name" value="Tet_transcr_reg_TetR-rel_C_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013572">
        <property type="entry name" value="Tscrpt_reg_MAATS_C"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08361">
        <property type="entry name" value="TetR_C_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00440">
        <property type="entry name" value="TetR_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00455">
        <property type="entry name" value="HTHTETR"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46689">
        <property type="entry name" value="SSF46689"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48498">
        <property type="entry name" value="SSF48498"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01081">
        <property type="entry name" value="HTH_TETR_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50977">
        <property type="entry name" value="HTH_TETR_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0678">Repressor</keyword>
    <feature type="domain" description="HTH tetR-type" evidence="3">
        <location>
            <begin position="21"/>
            <end position="81"/>
        </location>
    </feature>
    <feature type="DNA-binding region" description="H-T-H motif" evidence="2">
        <location>
            <begin position="44"/>
            <end position="63"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022491"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00335"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="PROSITE" id="PS50977"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="ABX33148.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="221" mass="24549" checksum="92A89B32E923938F" modified="2008-01-15" version="1">MAGLNDGRKYILARRTKEDAFATRNSLLDAAEQVFYEQGVARASLNEIAQRAGATRGAVYWHFKDKLDLFYAMLDRVTLPLEQAVYSDCEDDSECDALEYVRRLMAVVFGRIADDDSTRRVFEILLLKVEYVGELMPVQERNRAALDSFSAQLELALRAAAESHAVTMSMPAPQASIALCAMFDGLLQSWLLGRAFDLKQVGAQAVDVCLRGLGFTVPQAQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="62" xmlns="http://uniprot.org/uniprot">
    <accession>A9BRB7</accession>
    <name>A9BRB7_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Ig domain protein group 1 domain protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ordered locus">Daci_0529</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="5" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the intimin/invasin family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX33175.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012202461.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_0529"/>
    <dbReference type="PRIDE" id="A9BRB7"/>
    <dbReference type="EnsemblBacteria" id="ABX33175">
        <property type="protein sequence ID" value="ABX33175"/>
        <property type="gene ID" value="Daci_0529"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_0529"/>
    <dbReference type="eggNOG" id="COG1361">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="eggNOG" id="COG2911">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="eggNOG" id="COG3055">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_225437_0_0_4"/>
    <dbReference type="OMA" id="KTWSVNV"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.40.10">
        <property type="match status" value="9"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003344">
        <property type="entry name" value="Big_1_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013783">
        <property type="entry name" value="Ig-like_fold"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008964">
        <property type="entry name" value="Invasin/intimin_cell_adhesion"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015217">
        <property type="entry name" value="Invasin_dom_3"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02369">
        <property type="entry name" value="Big_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF09134">
        <property type="entry name" value="Invasin_D3"/>
        <property type="match status" value="4"/>
    </dbReference>
    <dbReference type="SMART" id="SM00634">
        <property type="entry name" value="BID_1"/>
        <property type="match status" value="4"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF49373">
        <property type="entry name" value="SSF49373"/>
        <property type="match status" value="8"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51127">
        <property type="entry name" value="BIG1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2" id="KW-0472">Membrane</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="2" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="3188"/>
            <end position="3204"/>
        </location>
    </feature>
    <feature type="domain" description="Big-1" evidence="3">
        <location>
            <begin position="972"/>
            <end position="1068"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00010116"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="PROSITE" id="PS51127"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="ABX33175.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="3209" mass="310070" checksum="9260D394B1DF05DB" modified="2008-01-15" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="57" xmlns="http://uniprot.org/uniprot">
    <accession>A9BRD5</accession>
    <name>A9BRD5_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Daci_0547</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="2" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX33193.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012202479.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_0547"/>
    <dbReference type="PRIDE" id="A9BRD5"/>
    <dbReference type="EnsemblBacteria" id="ABX33193">
        <property type="protein sequence ID" value="ABX33193"/>
        <property type="gene ID" value="Daci_0547"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_0547"/>
    <dbReference type="eggNOG" id="COG3118">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_756538_0_0_4"/>
    <dbReference type="OMA" id="NPHFAPY"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004062">
        <property type="term" value="F:aryl sulfotransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.130.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010262">
        <property type="entry name" value="Arylsulfotransferase_bact"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011044">
        <property type="entry name" value="Quino_amine_DH_bsu"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015943">
        <property type="entry name" value="WD40/YVTN_repeat-like_dom_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF05935">
        <property type="entry name" value="Arylsulfotrans"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50969">
        <property type="entry name" value="SSF50969"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ABX33193.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="376" mass="41634" checksum="FE4EFD46AD75746B" modified="2008-01-15" version="1">MASTVDQVTQRRRGVGLIAHDPALSAGGYTLIAPQTADGHVYLVDIEGRVAHEWKLPVRAGRHAVILPNGNLGYNGNHPRSPDRYAPWSMWHGGDFYEVTPQGEIVWRHEDPDHHHDAQWLPNGHLLYAACAPVPAGFAERVPGGTAHGPGEVMYGDVIREVDRSGRLVWEWKAWEHLAPEDFPIHPGFGRYHWPLVNGLGVRADGSVLMSLRTTSGIIAVDKASGAVKLHIPPSVVSHQHAPVALDNGHILAFDNGNFREGAHVAFSRVVEIDPADHRVVWSYQDEMVNAFYTAFMGNAQRLWNGNTHITESATGRLFEVTPAGEVVWEYILPWFAEYPDAAARRTGPGRLNSVFQTWRYHADQLPWLGAAGRLS</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="77" xmlns="http://uniprot.org/uniprot">
    <accession>A9BS21</accession>
    <name>A9BS21_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="8">ABC transporter related</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="8" type="ordered locus">Daci_0785</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="9" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="6">Lacks conserved residue(s) required for the propagation of feature annotation.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX33431.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012202717.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_0785"/>
    <dbReference type="PRIDE" id="A9BS21"/>
    <dbReference type="EnsemblBacteria" id="ABX33431">
        <property type="protein sequence ID" value="ABX33431"/>
        <property type="gene ID" value="Daci_0785"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_0785"/>
    <dbReference type="eggNOG" id="COG1129">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_000604_92_3_4"/>
    <dbReference type="OMA" id="MRDARVI"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003593">
        <property type="entry name" value="AAA+_ATPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003439">
        <property type="entry name" value="ABC_transporter-like_ATP-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017871">
        <property type="entry name" value="ABC_transporter-like_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00005">
        <property type="entry name" value="ABC_tran"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SMART" id="SM00382">
        <property type="entry name" value="AAA"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00211">
        <property type="entry name" value="ABC_TRANSPORTER_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50893">
        <property type="entry name" value="ABC_TRANSPORTER_2"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3 6" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="1" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="5" id="KW-0472">Membrane</keyword>
    <keyword evidence="2 6" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4" id="KW-1278">Translocase</keyword>
    <feature type="domain" description="ABC transporter" evidence="7">
        <location>
            <begin position="9"/>
            <end position="246"/>
        </location>
    </feature>
    <feature type="domain" description="ABC transporter" evidence="7">
        <location>
            <begin position="251"/>
            <end position="499"/>
        </location>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <begin position="41"/>
            <end position="48"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022967"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00434"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="PROSITE" id="PS50893"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="ABX33431.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="499" mass="53895" checksum="B1F9314A648F99CD" modified="2008-01-15" version="1">MDATTTALVRMQAVTVRFGDATALHALDWDVMPGEVHCLMGSNGSGKSTAIKVLSGVHAPQPGACIDIGGQPVQRLDPALAKSLGIQVIYQDLSLFPNLSVAENIAFDQAMGRWWAPVRRRRQREAAQAVLRRLGIALPLDARVGDLPIAGRQLVAICRGMAARARLLFMDEPTASLTRAEVDALLAVVRRLQADGMAIVFVSHKLDEVMEIADRVTVLRDGRKLGTWPAEQLSGRQLAALMTGQEVDERLHARDMSAAPVLLEVRGLGRDGDYEDVSFDVREGEILGLTGLLGAGRTELALGLFGMRRPDRGSIRLGGRTLALRSNRDAMAAGIAYVPEDRQSIGLNLRQSVQDNLVLAMLPRLSGPLGWLPASRRAATAAQWRDRLHMRLPALDAPVHQLSGGNAQRVVLARWLATAPRLLILDSPTVGVDIGNRQGIFEIVHGLAAQGMAVIVISDEVAEVHAHCDRVLHMRGGRMAGEFVPGVHSESQIEEAVHA</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="45" xmlns="http://uniprot.org/uniprot">
    <accession>A9BS62</accession>
    <name>A9BS62_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">FlgO domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Daci_0826</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="4" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX33472.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012202758.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_0826"/>
    <dbReference type="PRIDE" id="A9BS62"/>
    <dbReference type="EnsemblBacteria" id="ABX33472">
        <property type="protein sequence ID" value="ABX33472"/>
        <property type="gene ID" value="Daci_0826"/>
    </dbReference>
    <dbReference type="GeneID" id="60685388"/>
    <dbReference type="KEGG" id="dac:Daci_0826"/>
    <dbReference type="eggNOG" id="ENOG5030ICB">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_111499_1_0_4"/>
    <dbReference type="OMA" id="CARYYYG"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014549">
        <property type="entry name" value="FlgO"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041215">
        <property type="entry name" value="FlgO_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF17680">
        <property type="entry name" value="FlgO"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF028688">
        <property type="entry name" value="UCP_imp_028688"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="1">
        <location>
            <begin position="1"/>
            <end position="27"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5002735035" description="FlgO domain-containing protein" evidence="1">
        <location>
            <begin position="28"/>
            <end position="199"/>
        </location>
    </feature>
    <feature type="domain" description="FlgO" evidence="2">
        <location>
            <begin position="56"/>
            <end position="184"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF17680"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ABX33472.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="199" mass="21098" checksum="BD2B3CBFEF681A3D" modified="2008-01-15" version="1">MTLRTPLLPAALAAAALLSACAVPAPATTPESSAARRGEPTYQSAAANPFIASSRAAVDELVKGLNTEELGEAPVLVATVVNVNDLTRSAPLGRTLSELYASQLSAKGYNVKELKLRGDVYVKEGTGELLLSREIKDIARNHNAALVLVGTYSAAAKYTYVSLKLVRTDDSRIVRSHDYALPNNIDIQRLLGAPATAQR</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="77" xmlns="http://uniprot.org/uniprot">
    <accession>A9BSL8</accession>
    <name>A9BSL8_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Transcriptional regulator, Crp/Fnr family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Daci_1379</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="4" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX34023.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012203309.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_1379"/>
    <dbReference type="PRIDE" id="A9BSL8"/>
    <dbReference type="EnsemblBacteria" id="ABX34023">
        <property type="protein sequence ID" value="ABX34023"/>
        <property type="gene ID" value="Daci_1379"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_1379"/>
    <dbReference type="eggNOG" id="COG0664">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_075053_3_4_4"/>
    <dbReference type="OMA" id="EFQRRGW"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006355">
        <property type="term" value="P:regulation of transcription, DNA-templated"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd00038">
        <property type="entry name" value="CAP_ED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.120.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018490">
        <property type="entry name" value="cNMP-bd-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000595">
        <property type="entry name" value="cNMP-bd_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012318">
        <property type="entry name" value="HTH_CRP"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014710">
        <property type="entry name" value="RmlC-like_jellyroll"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036390">
        <property type="entry name" value="WH_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00027">
        <property type="entry name" value="cNMP_binding"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13545">
        <property type="entry name" value="HTH_Crp_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00419">
        <property type="entry name" value="HTH_CRP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46785">
        <property type="entry name" value="SSF46785"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51206">
        <property type="entry name" value="SSF51206"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51063">
        <property type="entry name" value="HTH_CRP_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HTH crp-type" evidence="2">
        <location>
            <begin position="158"/>
            <end position="231"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS51063"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ABX34023.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="245" mass="26869" checksum="0EA157D49DD5D175" modified="2008-01-15" version="1">MRSKPAPVADPSALIRRALGLCRMLHNWPPEVLDELTALSRLGRYERHQQVRAADPKRREVLVVASGCVEVGGVDATGSRFVLSMHSAGDIVGLARLLEHTQFVYDYHAHQPTVLVEIPGESFLALLDAHPPLWKDICLLVLARMHELIVVQQRHAFSNIDNRVAELLARLAPTHGQPAPDGQGVVLRISQSDLAAMLSVSRQTINKELRLLEQRGLLQAAYGRLTIVDLAGLLRLADAGARPGP</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="72" xmlns="http://uniprot.org/uniprot">
    <accession>A9BSM9</accession>
    <name>A9BSM9_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="5">Ribonuclease VapC</fullName>
            <shortName evidence="5">RNase VapC</shortName>
            <ecNumber evidence="5">3.1.-.-</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="5">Toxin VapC</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="5" type="primary">vapC</name>
        <name evidence="7" type="ordered locus">Daci_1390</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="8" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="5">Toxic component of a toxin-antitoxin (TA) system. An RNase.</text>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="5">
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </cofactor>
    </comment>
    <comment type="similarity">
        <text evidence="5">Belongs to the PINc/VapC protein family.</text>
    </comment>
    <dbReference type="EC" id="3.1.-.-" evidence="5"/>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX34034.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012203320.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_1390"/>
    <dbReference type="PRIDE" id="A9BSM9"/>
    <dbReference type="EnsemblBacteria" id="ABX34034">
        <property type="protein sequence ID" value="ABX34034"/>
        <property type="gene ID" value="Daci_1390"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_1390"/>
    <dbReference type="eggNOG" id="COG1487">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_118482_8_0_4"/>
    <dbReference type="OMA" id="TRCAHLH"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000287">
        <property type="term" value="F:magnesium ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004540">
        <property type="term" value="F:ribonuclease activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0090729">
        <property type="term" value="F:toxin activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00265">
        <property type="entry name" value="VapC_Nob1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029060">
        <property type="entry name" value="PIN-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002716">
        <property type="entry name" value="PIN_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR022907">
        <property type="entry name" value="VapC_family"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01850">
        <property type="entry name" value="PIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF88723">
        <property type="entry name" value="SSF88723"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4 5" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="5" id="KW-0460">Magnesium</keyword>
    <keyword evidence="3 5" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="2 5" id="KW-0540">Nuclease</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="5" id="KW-0800">Toxin</keyword>
    <keyword evidence="1 5" id="KW-1277">Toxin-antitoxin system</keyword>
    <feature type="domain" description="PINc" evidence="6">
        <location>
            <begin position="2"/>
            <end position="121"/>
        </location>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <position position="5"/>
        </location>
        <ligand>
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <position position="104"/>
        </location>
        <ligand>
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022649"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022722"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00265"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="Pfam" id="PF01850"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="ABX34034.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="141" mass="15461" checksum="E484807A4A338A47" modified="2008-01-15" version="1">MYLVDSNIVSELRKASSGRANDGVVAWAQSVAADSLFISAITLMELEKGVQLKARQDPVAGQVLRRWLVERVFTAFQGRVLPVDAMVAMENAAYHVPAPRPLADSLIAATAKVHGLCVVARNIKDFEPFHVHGVRVLNPWM</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="68" xmlns="http://uniprot.org/uniprot">
    <accession>A9BSN4</accession>
    <name>A9BSN4_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="8">Acyl-CoA dehydrogenase domain protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="8" type="ordered locus">Daci_1395</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="9" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>FAD</name>
            <dbReference type="ChEBI" id="CHEBI:57692"/>
        </cofactor>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the acyl-CoA dehydrogenase family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX34039.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012203325.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_1395"/>
    <dbReference type="PRIDE" id="A9BSN4"/>
    <dbReference type="EnsemblBacteria" id="ABX34039">
        <property type="protein sequence ID" value="ABX34039"/>
        <property type="gene ID" value="Daci_1395"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_1395"/>
    <dbReference type="eggNOG" id="COG1960">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_018204_9_0_4"/>
    <dbReference type="OMA" id="AWVHFPE"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0050660">
        <property type="term" value="F:flavin adenine dinucleotide binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016627">
        <property type="term" value="F:oxidoreductase activity, acting on the CH-CH group of donors"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.540.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.110.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006091">
        <property type="entry name" value="Acyl-CoA_Oxase/DH_mid-dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR046373">
        <property type="entry name" value="Acyl-CoA_Oxase/DH_mid-dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036250">
        <property type="entry name" value="AcylCo_DH-like_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009075">
        <property type="entry name" value="AcylCo_DH/oxidase_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013786">
        <property type="entry name" value="AcylCoA_DH/ox_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037069">
        <property type="entry name" value="AcylCoA_DH/ox_N_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009100">
        <property type="entry name" value="AcylCoA_DH/oxidase_NM_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00441">
        <property type="entry name" value="Acyl-CoA_dh_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02770">
        <property type="entry name" value="Acyl-CoA_dh_M"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02771">
        <property type="entry name" value="Acyl-CoA_dh_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47203">
        <property type="entry name" value="SSF47203"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56645">
        <property type="entry name" value="SSF56645"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-0274">FAD</keyword>
    <keyword evidence="3" id="KW-0285">Flavoprotein</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Acyl-CoA_dh_N" evidence="7">
        <location>
            <begin position="6"/>
            <end position="120"/>
        </location>
    </feature>
    <feature type="domain" description="Acyl-CoA_dh_M" evidence="6">
        <location>
            <begin position="125"/>
            <end position="219"/>
        </location>
    </feature>
    <feature type="domain" description="Acyl-CoA_dh_1" evidence="5">
        <location>
            <begin position="231"/>
            <end position="395"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001974"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00009347"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022630"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022827"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="Pfam" id="PF00441"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="Pfam" id="PF02770"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="Pfam" id="PF02771"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="ABX34039.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="398" mass="43937" checksum="B757F135C16FD2C0" modified="2008-01-15" version="1">MDLQFTTEELAFRDEVRGFLKDKLPEDLSHKVKNGLQLSKQDMERWHAILNERGWLANHWPEQHGGPGWSAVQKFIFEHECALAGTPRIVPFGLSMLGPVLIKYGNEAQKAHWLPRILNGADWWCQGYSEPGSGSDLASVKTSAVRDGDHYIVNGQKTWTTLGQHANMIFCLVRTNREAKAQQGISFLLVDMNSPGVEVRPIITLDGEHEVNEVFFTDVKVPVENLVGEENKGWTYAKYLLTYERTNIAGVGFSVAGLEKLKAVAGRMLRNGKPLTQDPLFAARLAKVEIDLENMKTTNLRVIAAVAGGGVPGAESSMLKIRGTEIRQEILSLVRRAMGPYAAPFIEEALQAGYDQPAIGDTAAATAAAAYFNYRKLSIFGGSNEIQKNIISKMILGL</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="40" xmlns="http://uniprot.org/uniprot">
    <accession>A9BST9</accession>
    <name>A9BST9_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Daci_1656</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="2" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX34299.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012203584.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_1656"/>
    <dbReference type="PRIDE" id="A9BST9"/>
    <dbReference type="EnsemblBacteria" id="ABX34299">
        <property type="protein sequence ID" value="ABX34299"/>
        <property type="gene ID" value="Daci_1656"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_1656"/>
    <dbReference type="eggNOG" id="ENOG50347Z0">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_2435941_0_0_4"/>
    <dbReference type="OMA" id="GFHIWYG"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ABX34299.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="89" mass="9783" checksum="C0C310F3DF6EE2B9" modified="2008-01-15" version="1">MILTLHIDKEEPGLYTARVLHGQAEVEEFQSGTISEAIRDCAGASLQGLDGFHIWYGHISIGTTSLYVMRHDAETLAQRLVSLHSQFGG</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="64" xmlns="http://uniprot.org/uniprot">
    <accession>A9BSZ3</accession>
    <name>A9BSZ3_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="7">Histone family protein nucleoid-structuring protein H-NS</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ordered locus">Daci_1710</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="8" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Cytoplasm</location>
            <location evidence="1">Nucleoid</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the histone-like protein H-NS family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX34353.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012203638.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_1710"/>
    <dbReference type="PRIDE" id="A9BSZ3"/>
    <dbReference type="EnsemblBacteria" id="ABX34353">
        <property type="protein sequence ID" value="ABX34353"/>
        <property type="gene ID" value="Daci_1710"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_1710"/>
    <dbReference type="eggNOG" id="COG2916">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_117503_5_1_4"/>
    <dbReference type="OMA" id="LWIRGKD"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009295">
        <property type="term" value="C:nucleoid"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030527">
        <property type="term" value="F:structural constituent of chromatin"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006355">
        <property type="term" value="P:regulation of transcription, DNA-templated"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027444">
        <property type="entry name" value="H-NS_C_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001801">
        <property type="entry name" value="Histone_HNS"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00816">
        <property type="entry name" value="Histone_HNS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00528">
        <property type="entry name" value="HNS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="4" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HNS" evidence="6">
        <location>
            <begin position="53"/>
            <end position="93"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="5">
        <location>
            <begin position="57"/>
            <end position="93"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004453"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00010610"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022490"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="SMART" id="SM00528"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="ABX34353.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="93" mass="10118" checksum="2DC35BE80C9618C6" modified="2008-01-15" version="1">MTSDYKTLLQQKAELEAKIAHALATEKSGVVARVRSLIEEFHLTPDDVFGGSKRKASAGAAKYRDPGTGATWTGRGKPPNWIKDAADRTSFEI</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="54" xmlns="http://uniprot.org/uniprot">
    <accession>A9BT09</accession>
    <name>A9BT09_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Transposase, IS4 family protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_1726</name>
        <name evidence="3" type="ordered locus">Daci_2047</name>
        <name evidence="4" type="ordered locus">Daci_2524</name>
        <name evidence="5" type="ordered locus">Daci_3094</name>
        <name evidence="6" type="ordered locus">Daci_3622</name>
        <name evidence="7" type="ordered locus">Daci_3631</name>
        <name evidence="8" type="ordered locus">Daci_3722</name>
        <name evidence="9" type="ordered locus">Daci_4477</name>
    </gene>
    <organism evidence="2 10">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 10" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10">DSM 14801 / SPH-1</strain>
            <strain evidence="2">SPH-1</strain>
        </source>
    </reference>
    <reference evidence="10" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="2" key="3">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX34369.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX34687.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX35162.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX35732.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX36256.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX36263.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX36354.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX37107.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_1726"/>
    <dbReference type="PRIDE" id="A9BT09"/>
    <dbReference type="EnsemblBacteria" id="ABX34369">
        <property type="protein sequence ID" value="ABX34369"/>
        <property type="gene ID" value="Daci_1726"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="ABX34687">
        <property type="protein sequence ID" value="ABX34687"/>
        <property type="gene ID" value="Daci_2047"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="ABX35162">
        <property type="protein sequence ID" value="ABX35162"/>
        <property type="gene ID" value="Daci_2524"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="ABX35732">
        <property type="protein sequence ID" value="ABX35732"/>
        <property type="gene ID" value="Daci_3094"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="ABX36256">
        <property type="protein sequence ID" value="ABX36256"/>
        <property type="gene ID" value="Daci_3622"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="ABX36263">
        <property type="protein sequence ID" value="ABX36263"/>
        <property type="gene ID" value="Daci_3631"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="ABX36354">
        <property type="protein sequence ID" value="ABX36354"/>
        <property type="gene ID" value="Daci_3722"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="ABX37107">
        <property type="protein sequence ID" value="ABX37107"/>
        <property type="gene ID" value="Daci_4477"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_1726"/>
    <dbReference type="KEGG" id="dac:Daci_2047"/>
    <dbReference type="KEGG" id="dac:Daci_2524"/>
    <dbReference type="KEGG" id="dac:Daci_3094"/>
    <dbReference type="KEGG" id="dac:Daci_3622"/>
    <dbReference type="KEGG" id="dac:Daci_3631"/>
    <dbReference type="KEGG" id="dac:Daci_3722"/>
    <dbReference type="KEGG" id="dac:Daci_4477"/>
    <dbReference type="eggNOG" id="COG3293">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_055261_1_4_4"/>
    <dbReference type="OMA" id="LACATIC"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025668">
        <property type="entry name" value="Tnp_DDE_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13586">
        <property type="entry name" value="DDE_Tnp_1_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Tnp_DDE_dom" evidence="1">
        <location>
            <begin position="26"/>
            <end position="103"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF13586"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX34369.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ABX34687.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="ABX35162.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="ABX35732.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="ABX36256.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="ABX36263.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="ABX36354.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="ABX37107.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="112" mass="13114" checksum="791B9654432EDF00" modified="2008-01-15" version="1">MFERCVDAIPAIAGLPGRPRRRPAKLHADKGYDFKRCRAHLRQRGIIGRIARRGIESSERLGKHRWVVERTHSWFAGFGKLRIRFERRLDIHEALLKLAAAIICARFVDRWC</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2021-06-02" version="47" xmlns="http://uniprot.org/uniprot">
    <accession>A9BTB7</accession>
    <name>A9BTB7_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Aromatic catabolism protein-like protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Daci_2042</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="2" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX34682.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012203967.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_2042"/>
    <dbReference type="EnsemblBacteria" id="ABX34682">
        <property type="protein sequence ID" value="ABX34682"/>
        <property type="gene ID" value="Daci_2042"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_2042"/>
    <dbReference type="eggNOG" id="COG2050">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_089876_5_1_4"/>
    <dbReference type="OMA" id="HETHCAT"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029069">
        <property type="entry name" value="HotDog_dom_sf"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54637">
        <property type="entry name" value="SSF54637"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ABX34682.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="151" mass="15803" checksum="6EEF71FD65A709FD" modified="2008-01-15" version="1">MTEPTTHPTPSTQALQNAVLAMPMARTLGLRFVRAEPGATELEMPIADALCFQPGQLQATAIFALGDFAAVSAAGSLLPAGWANATVDGSVKLFAPARGTHLRARGRVVDAGRVLSICAADLYAVAEDGHETHCATWLGTARNLEPRPAWA</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="98" xmlns="http://uniprot.org/uniprot">
    <accession>A9BTD2</accession>
    <name>A9BTD2_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="10">Two component, sigma54 specific, transcriptional regulator, Fis family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="10" type="ordered locus">Daci_2057</name>
    </gene>
    <organism evidence="10 11">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="10 11" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="11">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="11" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="11">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX34697.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012203980.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_2057"/>
    <dbReference type="PRIDE" id="A9BTD2"/>
    <dbReference type="EnsemblBacteria" id="ABX34697">
        <property type="protein sequence ID" value="ABX34697"/>
        <property type="gene ID" value="Daci_2057"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_2057"/>
    <dbReference type="eggNOG" id="COG2204">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_000445_0_6_4"/>
    <dbReference type="OMA" id="RGWHVEV"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043565">
        <property type="term" value="F:sequence-specific DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000160">
        <property type="term" value="P:phosphorelay signal transduction system"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006355">
        <property type="term" value="P:regulation of transcription, DNA-templated"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003593">
        <property type="entry name" value="AAA+_ATPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011006">
        <property type="entry name" value="CheY-like_superfamily"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009057">
        <property type="entry name" value="Homeobox-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002197">
        <property type="entry name" value="HTH_Fis"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001789">
        <property type="entry name" value="Sig_transdc_resp-reg_receiver"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002078">
        <property type="entry name" value="Sigma_54_int"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025662">
        <property type="entry name" value="Sigma_54_int_dom_ATP-bd_1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025943">
        <property type="entry name" value="Sigma_54_int_dom_ATP-bd_2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025944">
        <property type="entry name" value="Sigma_54_int_dom_CS"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02954">
        <property type="entry name" value="HTH_8"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00072">
        <property type="entry name" value="Response_reg"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00158">
        <property type="entry name" value="Sigma54_activat"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR01590">
        <property type="entry name" value="HTHFIS"/>
    </dbReference>
    <dbReference type="SMART" id="SM00382">
        <property type="entry name" value="AAA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00448">
        <property type="entry name" value="REC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46689">
        <property type="entry name" value="SSF46689"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52172">
        <property type="entry name" value="SSF52172"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50110">
        <property type="entry name" value="RESPONSE_REGULATORY"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00675">
        <property type="entry name" value="SIGMA54_INTERACT_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00676">
        <property type="entry name" value="SIGMA54_INTERACT_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00688">
        <property type="entry name" value="SIGMA54_INTERACT_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50045">
        <property type="entry name" value="SIGMA54_INTERACT_4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="4" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="1" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="6" id="KW-0597">Phosphoprotein</keyword>
    <keyword evidence="11" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="5" id="KW-0804">Transcription</keyword>
    <keyword evidence="3" id="KW-0805">Transcription regulation</keyword>
    <feature type="domain" description="Response regulatory" evidence="9">
        <location>
            <begin position="3"/>
            <end position="116"/>
        </location>
    </feature>
    <feature type="domain" description="Sigma-54 factor interaction" evidence="8">
        <location>
            <begin position="145"/>
            <end position="371"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="7">
        <location>
            <begin position="121"/>
            <end position="145"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="7">
        <location>
            <begin position="123"/>
            <end position="137"/>
        </location>
    </feature>
    <feature type="modified residue" description="4-aspartylphosphate" evidence="6">
        <location>
            <position position="52"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023015"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023163"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00169"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="PROSITE" id="PS50045"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="9">
        <source>
            <dbReference type="PROSITE" id="PS50110"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="EMBL" id="ABX34697.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="448" mass="47558" checksum="05D60559AB9C673B" modified="2008-01-15" version="1">MARILIVDDDTAFRESLAEMLGDLGHAVSAAPTVAAGLQVLQGGSVDVAIVDLRMPGEDGLAFLRKARGLSRAPCIMLTAYASGSNTIEAMRLGAFDHLTKPIARTSLVEVLERALLSAGQAGSPENAAQNPAQNQEPEGDDAELVSGSEAMRQVFKRIGLAADSDATVLVLGETGTGKELVARALHRNSARAERPFVAVNCAAIPADLMESELFGHVKGAFTGAASDRAGRFREAQGGTLFLDEVGDMPLPTQAKILRALQEREITPVGASRALPVNVRIIAATHRDLPAAVKEGRFREDLWYRLQVVPVHLPPLRERLGDVLLLAEHFLRQGGGASPKRLGADAAQLLLAHDWPGNVRELRNAMERAALLCPGPVIGAEHIGLQPAAAHGPAIDWNGPLAAAVAQLEREMVTRALAAATGNRAEAARRLGLSRQQLYRKLAEFGLG</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2021-06-02" version="48" xmlns="http://uniprot.org/uniprot">
    <accession>A9BTF3</accession>
    <name>A9BTF3_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ordered locus">Daci_2282</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="5" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Periplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the UPF0065 (bug) family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX34921.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012204204.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_2282"/>
    <dbReference type="EnsemblBacteria" id="ABX34921">
        <property type="protein sequence ID" value="ABX34921"/>
        <property type="gene ID" value="Daci_2282"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_2282"/>
    <dbReference type="eggNOG" id="COG3181">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_045683_0_2_4"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0042597">
        <property type="term" value="C:periplasmic space"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.190.150">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005064">
        <property type="entry name" value="BUG"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR042100">
        <property type="entry name" value="Bug_dom1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR42928">
        <property type="entry name" value="PTHR42928"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03401">
        <property type="entry name" value="TctC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF017082">
        <property type="entry name" value="YflP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="3">
        <location>
            <begin position="1"/>
            <end position="27"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5002732502" evidence="3">
        <location>
            <begin position="28"/>
            <end position="328"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004418"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00006987"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="ABX34921.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="328" mass="34208" checksum="13C75949E4233BE6" modified="2008-01-15" version="1">MPVSPSNRRQWLAMGTALISLSCAASAASTTYPSKPLRILVPYAAGGASDNIARQIAAAITGQTGQAVVVDNRPGGSGVIAVQALQAAPADGHTFAVFDPSVASMNPFLFKKLAYDPERALAPVSVLARNPIALVALPSFPAGSVRELVAHARSHGDLSYASTGNGNGTNLAMEMFLAGSAIQMVHVPYKGSAPAMQALLAGQVPVFMSDLPTVVPYARSGKVRVIAVTGDRRSPHLPDVPTFAEAGARGVEIANHFSAFVAGGTPPAVVEQLNAVLHKALADPRLQKNFSEMALEVSPSTPQQLQAMVRDDSEKYGAVIRRLNLSID</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="29" xmlns="http://uniprot.org/uniprot">
    <accession>A9BTM5</accession>
    <name>A9BTM5_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Daci_2355</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="2" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX34993.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_2355"/>
    <dbReference type="PRIDE" id="A9BTM5"/>
    <dbReference type="EnsemblBacteria" id="ABX34993">
        <property type="protein sequence ID" value="ABX34993"/>
        <property type="gene ID" value="Daci_2355"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_2355"/>
    <dbReference type="HOGENOM" id="CLU_2117013_0_0_4"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ABX34993.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="114" mass="12361" checksum="2C2BBC2EE0C5AF5F" modified="2008-01-15" version="1">MAKASEMAVSRPICAVLLPPASRTLVGSQKLRAIHSCRRSFSLLRNGPPALACRRCLHGWRLTFQILAVSTIATVLGSCVATLAHCSRPCWKQPSTVEISSAYAQMPKSIVKNK</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="52" xmlns="http://uniprot.org/uniprot">
    <accession>A9BTV8</accession>
    <name>A9BTV8_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_2734</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX35372.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_003056211.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_2734"/>
    <dbReference type="PRIDE" id="A9BTV8"/>
    <dbReference type="EnsemblBacteria" id="ABX35372">
        <property type="protein sequence ID" value="ABX35372"/>
        <property type="gene ID" value="Daci_2734"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_2734"/>
    <dbReference type="eggNOG" id="COG1961">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_059317_0_0_4"/>
    <dbReference type="OMA" id="TPRRYED"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR026325">
        <property type="entry name" value="DUF932"/>
    </dbReference>
    <dbReference type="Pfam" id="PF06067">
        <property type="entry name" value="DUF932"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="21"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="1"/>
            <end position="18"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX35372.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="275" mass="30785" checksum="2D5042B7B134C1B1" modified="2008-01-15" version="1">MQLASRFASHSPALRSDSPLSDDQIRRVAPSIFADAPHESRSERYSYIPTAAVLTELRKEGFQPFMVCQTRVRNEGRREHTKHMLRLRHANQINAREANEIILLNSHDGTSSYQLLGGMFRFVCSNGLVCGDTVGDVRVPHKGDVAGHVIEGAYQVLSGFEHAQESRESMQAITLDAGESEVFARAALALKYDDPTKPAPVTESQILMPRRFDDRRPDLWSVFNRTQENLTKGGLHGRAANGRRQQTRPVQGIDSDIRLNRALWLLADGMRALKA</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="79" xmlns="http://uniprot.org/uniprot">
    <accession>A9BU27</accession>
    <name>A9BU27_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Transcriptional regulator, LuxR family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Daci_3104</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="4" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX35742.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_3104"/>
    <dbReference type="PRIDE" id="A9BU27"/>
    <dbReference type="EnsemblBacteria" id="ABX35742">
        <property type="protein sequence ID" value="ABX35742"/>
        <property type="gene ID" value="Daci_3104"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_3104"/>
    <dbReference type="eggNOG" id="COG2197">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_1624426_0_0_4"/>
    <dbReference type="OMA" id="SEHTVRK"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006355">
        <property type="term" value="P:regulation of transcription, DNA-templated"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd06170">
        <property type="entry name" value="LuxR_C_like"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016032">
        <property type="entry name" value="Sig_transdc_resp-reg_C-effctor"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000792">
        <property type="entry name" value="Tscrpt_reg_LuxR_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00196">
        <property type="entry name" value="GerE"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00038">
        <property type="entry name" value="HTHLUXR"/>
    </dbReference>
    <dbReference type="SMART" id="SM00421">
        <property type="entry name" value="HTH_LUXR"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46894">
        <property type="entry name" value="SSF46894"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00622">
        <property type="entry name" value="HTH_LUXR_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50043">
        <property type="entry name" value="HTH_LUXR_2"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HTH luxR-type" evidence="2">
        <location>
            <begin position="23"/>
            <end position="88"/>
        </location>
    </feature>
    <feature type="domain" description="HTH luxR-type" evidence="2">
        <location>
            <begin position="92"/>
            <end position="157"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS50043"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ABX35742.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="163" mass="17743" checksum="A15956EDC82764B1" modified="2008-01-15" version="1">MDISEIALANSECHLDAAHPTADEVIASALTAREIDVLEAMAKGLGCKDIAHTLGISEHTVRKHRSNMCTRLGLRNAVELVTHARRQGWLSAARSPLPLSPREQEVLAHVLAGHTSKEIARSLYLSDLTVRKHRENILRKLGLTSTAQLQTFAPTATRNGGDT</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="99" xmlns="http://uniprot.org/uniprot">
    <accession>A9BU95</accession>
    <name>A9BU95_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="10">ABC transporter related</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="10" type="ordered locus">Daci_3172</name>
    </gene>
    <organism evidence="10 11">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="10 11" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="11">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="11" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="11">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX35810.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012205010.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_3172"/>
    <dbReference type="PRIDE" id="A9BU95"/>
    <dbReference type="EnsemblBacteria" id="ABX35810">
        <property type="protein sequence ID" value="ABX35810"/>
        <property type="gene ID" value="Daci_3172"/>
    </dbReference>
    <dbReference type="GeneID" id="60687450"/>
    <dbReference type="KEGG" id="dac:Daci_3172"/>
    <dbReference type="eggNOG" id="COG1135">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_000604_1_3_4"/>
    <dbReference type="OMA" id="ICTDVAV"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0033232">
        <property type="term" value="F:ABC-type D-methionine transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd03258">
        <property type="entry name" value="ABC_MetN_methionine_transporter"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003593">
        <property type="entry name" value="AAA+_ATPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR026253">
        <property type="entry name" value="ABC_MetN"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003439">
        <property type="entry name" value="ABC_transporter-like_ATP-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017871">
        <property type="entry name" value="ABC_transporter-like_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045865">
        <property type="entry name" value="ACT-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041701">
        <property type="entry name" value="MetN_ABC"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018449">
        <property type="entry name" value="NIL_domain"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43166:SF5">
        <property type="entry name" value="PTHR43166:SF5"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00005">
        <property type="entry name" value="ABC_tran"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF09383">
        <property type="entry name" value="NIL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00382">
        <property type="entry name" value="AAA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00930">
        <property type="entry name" value="NIL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55021">
        <property type="entry name" value="SSF55021"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00211">
        <property type="entry name" value="ABC_TRANSPORTER_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50893">
        <property type="entry name" value="ABC_TRANSPORTER_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="6" id="KW-0029">Amino-acid transport</keyword>
    <keyword evidence="4 8" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="2" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="7" id="KW-0472">Membrane</keyword>
    <keyword evidence="3 8" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="11" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="5" id="KW-1278">Translocase</keyword>
    <keyword evidence="1" id="KW-0813">Transport</keyword>
    <feature type="domain" description="ABC transporter" evidence="9">
        <location>
            <begin position="4"/>
            <end position="241"/>
        </location>
    </feature>
    <feature type="binding site" evidence="8">
        <location>
            <begin position="38"/>
            <end position="45"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022448"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022967"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022970"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00434"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="9">
        <source>
            <dbReference type="PROSITE" id="PS50893"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="EMBL" id="ABX35810.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="348" mass="37583" checksum="7D01E04BF8840D42" modified="2008-01-15" version="1">MIEIRDLSLTYKGPTGPVHALRGINLQIESGEVFGIIGRSGAGKSSLVRCLNLLNRPTSGQVLVGGRDLMQLSDAELRTARRDIGMVFQHFNLLSSRTVFDNAALPLEMAGMSADDIKKRVDPLLDLVGLSALRDRYPAQISGGQKQRVGIARALASHPKVLLSDEATSALDPETTRSILDLLRKVNRELGLTVVLITHQMQVIKQIADRVAVIDGGEIAELGPVIDVFTRPQQAITRSLIDEIVPQQLPESVAVRVNALAAQLAPGQQGRLLRLSYAGESAYQPILSHLIRELGLDLSILHGQIDEIQEQTFGSLAVFASGDAAKIDAAVDHLRATGVQVQIVSTRD</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="75" xmlns="http://uniprot.org/uniprot">
    <accession>A9BUA7</accession>
    <name>A9BUA7_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="8">Acyl-CoA dehydrogenase domain protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="8" type="ordered locus">Daci_1165</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="9" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>FAD</name>
            <dbReference type="ChEBI" id="CHEBI:57692"/>
        </cofactor>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the acyl-CoA dehydrogenase family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX33810.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012203096.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_1165"/>
    <dbReference type="PRIDE" id="A9BUA7"/>
    <dbReference type="EnsemblBacteria" id="ABX33810">
        <property type="protein sequence ID" value="ABX33810"/>
        <property type="gene ID" value="Daci_1165"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_1165"/>
    <dbReference type="eggNOG" id="COG1960">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_018204_0_2_4"/>
    <dbReference type="OMA" id="YAIPQQW"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0050660">
        <property type="term" value="F:flavin adenine dinucleotide binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016627">
        <property type="term" value="F:oxidoreductase activity, acting on the CH-CH group of donors"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.540.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.110.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006091">
        <property type="entry name" value="Acyl-CoA_Oxase/DH_mid-dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR046373">
        <property type="entry name" value="Acyl-CoA_Oxase/DH_mid-dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036250">
        <property type="entry name" value="AcylCo_DH-like_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009075">
        <property type="entry name" value="AcylCo_DH/oxidase_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013786">
        <property type="entry name" value="AcylCoA_DH/ox_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037069">
        <property type="entry name" value="AcylCoA_DH/ox_N_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009100">
        <property type="entry name" value="AcylCoA_DH/oxidase_NM_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00441">
        <property type="entry name" value="Acyl-CoA_dh_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02770">
        <property type="entry name" value="Acyl-CoA_dh_M"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02771">
        <property type="entry name" value="Acyl-CoA_dh_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47203">
        <property type="entry name" value="SSF47203"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56645">
        <property type="entry name" value="SSF56645"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-0274">FAD</keyword>
    <keyword evidence="3" id="KW-0285">Flavoprotein</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Acyl-CoA_dh_N" evidence="7">
        <location>
            <begin position="15"/>
            <end position="123"/>
        </location>
    </feature>
    <feature type="domain" description="Acyl-CoA_dh_M" evidence="6">
        <location>
            <begin position="127"/>
            <end position="222"/>
        </location>
    </feature>
    <feature type="domain" description="Acyl-CoA_dh_1" evidence="5">
        <location>
            <begin position="235"/>
            <end position="384"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001974"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00009347"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022630"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022827"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="Pfam" id="PF00441"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="Pfam" id="PF02770"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="Pfam" id="PF02771"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="ABX33810.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="389" mass="42664" checksum="9A772B12CAA570FC" modified="2008-01-15" version="1">MSQAPTPHPADARLQALIADIRHFVRHRWHPLEEQIERDDSIPPAVVQELRDKGYFGWSIPQAYGGLGLGTEELVRCAFELSQASVALRARVGTNTGIGSEALVADGTEAQKQRWLPRMARGELTGCLALTEPDAGSEASNIQTTARREGDHYVLNGSKRFITNAPLADVFTVIARTGEGSTGSEGLTAFFVERSPGLVTGQPYRKMGQAGSPVSDVHFQDCRVPADQIIGGREGQGFKTVMKVLNKQRLHLAALCTGPAIRMLDLALAHVRQREQFGQPVANFQLVQAMLADSRTEIFAAQSMILEAARARDRGEDVALSASMCKYFASEMCGRVADRAVQMFGGAGYVADFSPIERYFRDVRLFRLYEGTSQIHQLNIAKLMLRESA</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="80" xmlns="http://uniprot.org/uniprot">
    <accession>A9BUB5</accession>
    <name>A9BUB5_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="10">TonB-dependent siderophore receptor</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="10" type="ordered locus">Daci_1173</name>
    </gene>
    <organism evidence="10 11">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="10 11" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="11">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="11" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="11">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="6">Cell outer membrane</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="1 6">Belongs to the TonB-dependent receptor family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX33818.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012203104.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_1173"/>
    <dbReference type="PRIDE" id="A9BUB5"/>
    <dbReference type="EnsemblBacteria" id="ABX33818">
        <property type="protein sequence ID" value="ABX33818"/>
        <property type="gene ID" value="Daci_1173"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_1173"/>
    <dbReference type="eggNOG" id="COG4774">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_008287_9_1_4"/>
    <dbReference type="OMA" id="TWGSDQT"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009279">
        <property type="term" value="C:cell outer membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015344">
        <property type="term" value="F:siderophore uptake transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0038023">
        <property type="term" value="F:signaling receptor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.170.130.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.170.20">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR030148">
        <property type="entry name" value="Fiu"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012910">
        <property type="entry name" value="Plug_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037066">
        <property type="entry name" value="Plug_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR039423">
        <property type="entry name" value="TonB-dep_rcpt"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000531">
        <property type="entry name" value="TonB-dep_rcpt_b-brl"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036942">
        <property type="entry name" value="TonB_rcpt_b-brl_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010105">
        <property type="entry name" value="TonB_sidphr_rcpt"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR32552">
        <property type="entry name" value="PTHR32552"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR32552:SF68">
        <property type="entry name" value="PTHR32552:SF68"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07715">
        <property type="entry name" value="Plug"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00593">
        <property type="entry name" value="TonB_dep_Rec"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01783">
        <property type="entry name" value="TonB-siderophor"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-0998">Cell outer membrane</keyword>
    <keyword evidence="3 6" id="KW-0472">Membrane</keyword>
    <keyword evidence="4 10" id="KW-0675">Receptor</keyword>
    <keyword evidence="11" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="7" id="KW-0732">Signal</keyword>
    <keyword evidence="2 6" id="KW-0798">TonB box</keyword>
    <feature type="signal peptide" evidence="7">
        <location>
            <begin position="1"/>
            <end position="31"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5002735813" evidence="7">
        <location>
            <begin position="32"/>
            <end position="741"/>
        </location>
    </feature>
    <feature type="domain" description="Plug" evidence="9">
        <location>
            <begin position="65"/>
            <end position="162"/>
        </location>
    </feature>
    <feature type="domain" description="TonB_dep_Rec" evidence="8">
        <location>
            <begin position="259"/>
            <end position="740"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00009810"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023077"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023170"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023237"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="RuleBase" id="RU003357"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="Pfam" id="PF00593"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="9">
        <source>
            <dbReference type="Pfam" id="PF07715"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="EMBL" id="ABX33818.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="741" mass="79256" checksum="79CCA835B948BC30" modified="2008-01-15" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="91" xmlns="http://uniprot.org/uniprot">
    <accession>A9BUI9</accession>
    <name>A9BUI9_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="4 8">Diaminopimelate epimerase</fullName>
            <shortName evidence="8">DAP epimerase</shortName>
            <ecNumber evidence="4 8">5.1.1.7</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="8">PLP-independent amino acid racemase</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="8" type="primary">dapF</name>
        <name evidence="10" type="ordered locus">Daci_1453</name>
    </gene>
    <organism evidence="10 11">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="10 11" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="11">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="11" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="11">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="8">Catalyzes the stereoinversion of LL-2,6-diaminoheptanedioate (L,L-DAP) to meso-diaminoheptanedioate (meso-DAP), a precursor of L-lysine and an essential component of the bacterial peptidoglycan.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1 8">
            <text>(2S,6S)-2,6-diaminoheptanedioate = meso-2,6-diaminoheptanedioate</text>
            <dbReference type="Rhea" id="RHEA:15393"/>
            <dbReference type="ChEBI" id="CHEBI:57609"/>
            <dbReference type="ChEBI" id="CHEBI:57791"/>
            <dbReference type="EC" id="5.1.1.7"/>
        </reaction>
    </comment>
    <comment type="pathway">
        <text evidence="2 8">Amino-acid biosynthesis; L-lysine biosynthesis via DAP pathway; DL-2,6-diaminopimelate from LL-2,6-diaminopimelate: step 1/1.</text>
    </comment>
    <comment type="subunit">
        <text evidence="8">Homodimer.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="8">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="3 8">Belongs to the diaminopimelate epimerase family.</text>
    </comment>
    <dbReference type="EC" id="5.1.1.7" evidence="4 8"/>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX34097.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012203383.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_1453"/>
    <dbReference type="PRIDE" id="A9BUI9"/>
    <dbReference type="EnsemblBacteria" id="ABX34097">
        <property type="protein sequence ID" value="ABX34097"/>
        <property type="gene ID" value="Daci_1453"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_1453"/>
    <dbReference type="eggNOG" id="COG0253">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_053306_1_1_4"/>
    <dbReference type="OMA" id="HVAMRVH"/>
    <dbReference type="UniPathway" id="UPA00034">
        <property type="reaction ID" value="UER00025"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008837">
        <property type="term" value="F:diaminopimelate epimerase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009089">
        <property type="term" value="P:lysine biosynthetic process via diaminopimelate"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00197">
        <property type="entry name" value="DAP_epimerase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018510">
        <property type="entry name" value="DAP_epimerase_AS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001653">
        <property type="entry name" value="DAP_epimerase_DapF"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR31689">
        <property type="entry name" value="PTHR31689"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01678">
        <property type="entry name" value="DAP_epimerase"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00652">
        <property type="entry name" value="DapF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01326">
        <property type="entry name" value="DAP_EPIMERASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5 8" id="KW-0028">Amino-acid biosynthesis</keyword>
    <keyword evidence="8" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="7 8 10" id="KW-0413">Isomerase</keyword>
    <keyword evidence="6 8" id="KW-0457">Lysine biosynthesis</keyword>
    <keyword evidence="11" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Substrate binding" evidence="8">
        <location>
            <begin position="76"/>
            <end position="77"/>
        </location>
    </feature>
    <feature type="region of interest" description="Substrate binding" evidence="8">
        <location>
            <begin position="218"/>
            <end position="219"/>
        </location>
    </feature>
    <feature type="region of interest" description="Substrate binding" evidence="8">
        <location>
            <begin position="228"/>
            <end position="229"/>
        </location>
    </feature>
    <feature type="active site" evidence="9">
        <location>
            <position position="75"/>
        </location>
    </feature>
    <feature type="active site" description="Proton donor" evidence="8">
        <location>
            <position position="75"/>
        </location>
    </feature>
    <feature type="active site" description="Proton acceptor" evidence="8">
        <location>
            <position position="227"/>
        </location>
    </feature>
    <feature type="binding site" evidence="8">
        <location>
            <position position="13"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="8">
        <location>
            <position position="46"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="8">
        <location>
            <position position="66"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="8">
        <location>
            <position position="167"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="8">
        <location>
            <position position="200"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="site" description="Could be important to modulate the pK values of the two catalytic cysteine residues" evidence="8">
        <location>
            <position position="169"/>
        </location>
    </feature>
    <feature type="site" description="Could be important to modulate the pK values of the two catalytic cysteine residues" evidence="8">
        <location>
            <position position="218"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00000599"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00005196"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00010219"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00013080"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022605"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023154"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023235"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00197"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU10125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="EMBL" id="ABX34097.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="286" mass="30785" checksum="E7BFFBB4202C52F8" modified="2008-01-15" version="1">MQIRFTKMQGAGNDFVVLDETAGPLGLSAAQYRFLAHRQFGVGADQILTVRPSPAEGIDFEYVIHNADGGEVEQCGNGARCFARYVHDKGLTGKSVIRVQTLAGLIAPELHADGRVTVDMGQPVLEPSLVPFNGADLVPRPLGAAQQWPLQLGDEATVWIAPVSMGNPHAVQLVDDVDHAPVATWGPLIERHVRFPQRVNAGFMQIVDRGQIRLRVYERGAGETLACGTGACAAVVAGIRWGLLDARVDVHTRGGRLTIEWDGGAVRMTGPAEFVFEGQIEVPDQP</sequence>
</entry>
<entry dataset="Swiss-Prot" created="2009-04-14" modified="2022-08-03" version="79" xmlns="http://uniprot.org/uniprot">
    <accession>A9BUJ7</accession>
    <name>MRAZ_DELAS</name>
    <protein>
        <recommendedName>
            <fullName>Transcriptional regulator MraZ</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="1" type="primary">mraZ</name>
        <name type="ordered locus">Daci_1461</name>
    </gene>
    <organism>
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference key="1">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain>DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="subunit">
        <text evidence="1">Forms oligomers.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Cytoplasm</location>
            <location evidence="1">Nucleoid</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="1">Belongs to the MraZ family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX34105.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012203391.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A9BUJ7"/>
    <dbReference type="SMR" id="A9BUJ7"/>
    <dbReference type="STRING" id="398578.Daci_1461"/>
    <dbReference type="PRIDE" id="A9BUJ7"/>
    <dbReference type="EnsemblBacteria" id="ABX34105">
        <property type="protein sequence ID" value="ABX34105"/>
        <property type="gene ID" value="Daci_1461"/>
    </dbReference>
    <dbReference type="GeneID" id="60686002"/>
    <dbReference type="KEGG" id="dac:Daci_1461"/>
    <dbReference type="eggNOG" id="COG2001">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_107907_2_1_4"/>
    <dbReference type="OMA" id="RGQERCL"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009295">
        <property type="term" value="C:nucleoid"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003700">
        <property type="term" value="F:DNA-binding transcription factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd16321">
        <property type="entry name" value="MraZ_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="CDD" id="cd16320">
        <property type="entry name" value="MraZ_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.1550.20">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01008">
        <property type="entry name" value="MraZ"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003444">
        <property type="entry name" value="MraZ"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035644">
        <property type="entry name" value="MraZ_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020603">
        <property type="entry name" value="MraZ_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035642">
        <property type="entry name" value="MraZ_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038619">
        <property type="entry name" value="MraZ_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007159">
        <property type="entry name" value="SpoVT-AbrB_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037914">
        <property type="entry name" value="SpoVT-AbrB_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR34701">
        <property type="entry name" value="PTHR34701"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02381">
        <property type="entry name" value="MraZ"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF89447">
        <property type="entry name" value="SSF89447"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00242">
        <property type="entry name" value="TIGR00242"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51740">
        <property type="entry name" value="SPOVT_ABRB"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword id="KW-0963">Cytoplasm</keyword>
    <keyword id="KW-0238">DNA-binding</keyword>
    <keyword id="KW-1185">Reference proteome</keyword>
    <keyword id="KW-0677">Repeat</keyword>
    <keyword id="KW-0804">Transcription</keyword>
    <keyword id="KW-0805">Transcription regulation</keyword>
    <feature type="chain" id="PRO_1000134785" description="Transcriptional regulator MraZ">
        <location>
            <begin position="1"/>
            <end position="142"/>
        </location>
    </feature>
    <feature type="domain" description="SpoVT-AbrB 1" evidence="2">
        <location>
            <begin position="5"/>
            <end position="51"/>
        </location>
    </feature>
    <feature type="domain" description="SpoVT-AbrB 2" evidence="2">
        <location>
            <begin position="77"/>
            <end position="120"/>
        </location>
    </feature>
    <evidence type="ECO:0000255" key="1">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01008"/>
        </source>
    </evidence>
    <evidence type="ECO:0000255" key="2">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU01076"/>
        </source>
    </evidence>
    <sequence length="142" mass="16075" checksum="A5642434B630B7CD" modified="2008-01-15" version="1">MFQGASSLNLDGKGRLSVPTRHRDALVAMAQGQVTLTKHPHGCLMLFPRTEWLQFRERIAQLPMSAQWWKRIFLGNAMDVDMDATGRVLVSPELREAVGLTKEVVLLGMGNHFELWDKATYEAHEAKAMQEEMPAAFQDFAF</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2021-06-02" version="62" xmlns="http://uniprot.org/uniprot">
    <accession>A9BUV4</accession>
    <name>A9BUV4_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="3">FMN reductase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Daci_1774</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="4" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the SsuE family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX34416.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012203701.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_1774"/>
    <dbReference type="EnsemblBacteria" id="ABX34416">
        <property type="protein sequence ID" value="ABX34416"/>
        <property type="gene ID" value="Daci_1774"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_1774"/>
    <dbReference type="eggNOG" id="COG0431">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_055322_3_3_4"/>
    <dbReference type="OMA" id="FMSHTLP"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016491">
        <property type="term" value="F:oxidoreductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.360">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029039">
        <property type="entry name" value="Flavoprotein-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005025">
        <property type="entry name" value="FMN_Rdtase-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019912">
        <property type="entry name" value="FMN_Rdtase_MsuE-like"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03358">
        <property type="entry name" value="FMN_red"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52218">
        <property type="entry name" value="SSF52218"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR03566">
        <property type="entry name" value="FMN_reduc_MsuE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="FMN_red" evidence="2">
        <location>
            <begin position="6"/>
            <end position="149"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00005990"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF03358"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ABX34416.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="209" mass="22343" checksum="DD9373C39D1CC5AB" modified="2008-01-15" version="1">MSRSLKTVIVNGSLSRPSRTRVLLDALHARLGQELPLQAQVIDLLDLQPHLGAALSKNDLPPATLQAIEAIEQADFLIVGAPVFRASLPGLLKHLFDLIDLDALQGTPVLLAATGGSPRHALILDHQLRPLFGFFSALTLPIGVYSTPEDIQDGQVHSESLRQRIELTVQLSAPVLRGALQQLVQAQAQAEAQRPVPEAADLALAGQPA</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="65" xmlns="http://uniprot.org/uniprot">
    <accession>A9BUW7</accession>
    <name>A9BUW7_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">2-oxo-hepta-3-ene-1,7-dioic acid hydratase</fullName>
            <ecNumber evidence="2">4.1.1.77</ecNumber>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_1787</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EC" id="4.1.1.77" evidence="2"/>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX34429.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012203714.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_1787"/>
    <dbReference type="PRIDE" id="A9BUW7"/>
    <dbReference type="EnsemblBacteria" id="ABX34429">
        <property type="protein sequence ID" value="ABX34429"/>
        <property type="gene ID" value="Daci_1787"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_1787"/>
    <dbReference type="eggNOG" id="COG3971">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_060136_3_0_4"/>
    <dbReference type="OMA" id="MLGVYQP"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0018817">
        <property type="term" value="F:2-oxo-hept-3-ene-1,7-dioate hydratase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0047437">
        <property type="term" value="F:4-oxalocrotonate decarboxylase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0019439">
        <property type="term" value="P:aromatic compound catabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.850.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011234">
        <property type="entry name" value="Fumarylacetoacetase-like_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036663">
        <property type="entry name" value="Fumarylacetoacetase_C_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012690">
        <property type="entry name" value="HpcG"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01557">
        <property type="entry name" value="FAA_hydrolase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56529">
        <property type="entry name" value="SSF56529"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR02312">
        <property type="entry name" value="HpaH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0456">Lyase</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="FAA_hydrolase" evidence="1">
        <location>
            <begin position="86"/>
            <end position="264"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF01557"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX34429.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="267" mass="29199" checksum="0103EF9EF3C4FAE0" modified="2008-01-15" version="1">MLAQHTIDSLAAELHASEKSRVQVRHFSRRHPDMTVQDGYAISRAWMRLKRAEGRTVRGHKIGLTSRAMQQAVQITEPDYGTLLDDMFFEPGGDIPFARFIAPRVEVELAFVLGRTLKGPGVTLCDVLAAADWVVPAVEIIDARIEQKDRDTQAMRTVRDTIADNAANAGIVMGGRPVRPDAVDLRWVSALLQRNGVIEESGVAAAVLNHPATGVAWLANRLAQWDEQLDAGQVVLAGSFTRPVTAQAGDSFHVDYGPLGSIAWRFA</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="86" xmlns="http://uniprot.org/uniprot">
    <accession>A9BUY9</accession>
    <name>A9BUY9_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Two component transcriptional regulator, LuxR family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ordered locus">Daci_1809</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="6" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX34451.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012203736.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_1809"/>
    <dbReference type="PRIDE" id="A9BUY9"/>
    <dbReference type="EnsemblBacteria" id="ABX34451">
        <property type="protein sequence ID" value="ABX34451"/>
        <property type="gene ID" value="Daci_1809"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_1809"/>
    <dbReference type="eggNOG" id="COG2197">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_000445_90_1_4"/>
    <dbReference type="OMA" id="NVLRKTQ"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000160">
        <property type="term" value="P:phosphorelay signal transduction system"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006355">
        <property type="term" value="P:regulation of transcription, DNA-templated"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd06170">
        <property type="entry name" value="LuxR_C_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011006">
        <property type="entry name" value="CheY-like_superfamily"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016032">
        <property type="entry name" value="Sig_transdc_resp-reg_C-effctor"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001789">
        <property type="entry name" value="Sig_transdc_resp-reg_receiver"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000792">
        <property type="entry name" value="Tscrpt_reg_LuxR_C"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00196">
        <property type="entry name" value="GerE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00072">
        <property type="entry name" value="Response_reg"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00038">
        <property type="entry name" value="HTHLUXR"/>
    </dbReference>
    <dbReference type="SMART" id="SM00421">
        <property type="entry name" value="HTH_LUXR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00448">
        <property type="entry name" value="REC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46894">
        <property type="entry name" value="SSF46894"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52172">
        <property type="entry name" value="SSF52172"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00622">
        <property type="entry name" value="HTH_LUXR_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50043">
        <property type="entry name" value="HTH_LUXR_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50110">
        <property type="entry name" value="RESPONSE_REGULATORY"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="2" id="KW-0597">Phosphoprotein</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Response regulatory" evidence="4">
        <location>
            <begin position="3"/>
            <end position="119"/>
        </location>
    </feature>
    <feature type="domain" description="HTH luxR-type" evidence="3">
        <location>
            <begin position="142"/>
            <end position="207"/>
        </location>
    </feature>
    <feature type="modified residue" description="4-aspartylphosphate" evidence="2">
        <location>
            <position position="54"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00169"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="PROSITE" id="PS50043"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="PROSITE" id="PS50110"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="ABX34451.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="210" mass="23232" checksum="5F65F89C554ADC33" modified="2008-01-15" version="1">MIRIGIVDDHAIVRSGLRQFLSEHVDLRVVGEAANGREAIDLVRAHEIDVLLMDLSMPGQSGIDALAMLRAKAPDMGILILSGYPEEHYAINLIRQGASGYLNKECDPQEIAEAIRTVALGRRYLTPAVADLLAQQLNRKDDAPAHEQLSEREFQVFLKLARGETAGDIAKSLSLSVKTVSTYRTRLMEKMGLSSNSDLTYYALKNRLID</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-01-19" version="42" xmlns="http://uniprot.org/uniprot">
    <accession>A9BV06</accession>
    <name>A9BV06_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_1826</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX34468.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="ABX34468">
        <property type="protein sequence ID" value="ABX34468"/>
        <property type="gene ID" value="Daci_1826"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_1826"/>
    <dbReference type="eggNOG" id="ENOG5031J36">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_166677_0_0_4"/>
    <dbReference type="OMA" id="LEMWHQA"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025421">
        <property type="entry name" value="DUF4148"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13663">
        <property type="entry name" value="DUF4148"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="1">
        <location>
            <begin position="1"/>
            <end position="31"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5002733102" evidence="1">
        <location>
            <begin position="32"/>
            <end position="113"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX34468.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="113" mass="11985" checksum="D6C93198ACF5CF36" modified="2008-01-15" version="1">MPSGLLKGSDMRTLSAALAALTLGLAGTAMAQEAVSPSSSATAGLSRAEVLADLEMWHQAGMTYLPSPSADRDISYNSAEYQRGLARYQQLRSGPAYREAVARLEGQHTVTQK</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="72" xmlns="http://uniprot.org/uniprot">
    <accession>A9BV34</accession>
    <name>A9BV34_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="7">Major facilitator superfamily MFS_1</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ordered locus">Daci_1856</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="8" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX34496.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012203781.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_1856"/>
    <dbReference type="PRIDE" id="A9BV34"/>
    <dbReference type="EnsemblBacteria" id="ABX34496">
        <property type="protein sequence ID" value="ABX34496"/>
        <property type="gene ID" value="Daci_1856"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_1856"/>
    <dbReference type="eggNOG" id="COG2814">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_001265_46_6_4"/>
    <dbReference type="OMA" id="QIWIIWL"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0022857">
        <property type="term" value="F:transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.1250.20">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011701">
        <property type="entry name" value="MFS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020846">
        <property type="entry name" value="MFS_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036259">
        <property type="entry name" value="MFS_trans_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005829">
        <property type="entry name" value="Sugar_transporter_CS"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07690">
        <property type="entry name" value="MFS_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF103473">
        <property type="entry name" value="SSF103473"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50850">
        <property type="entry name" value="MFS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00216">
        <property type="entry name" value="SUGAR_TRANSPORT_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4 5" id="KW-0472">Membrane</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 5" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="3 5" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="20"/>
            <end position="40"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="60"/>
            <end position="78"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="90"/>
            <end position="109"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="115"/>
            <end position="136"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="148"/>
            <end position="171"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="177"/>
            <end position="199"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="258"/>
            <end position="280"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="292"/>
            <end position="314"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="321"/>
            <end position="339"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="345"/>
            <end position="368"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="380"/>
            <end position="403"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="409"/>
            <end position="428"/>
        </location>
    </feature>
    <feature type="domain" description="MFS" evidence="6">
        <location>
            <begin position="24"/>
            <end position="433"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="PROSITE" id="PS50850"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="ABX34496.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="438" mass="47536" checksum="2303E4A31221D527" modified="2008-01-15" version="1">MSSTYISVEKGIQTAGVGKFQYRLFVIFGLVWLADAMQVLSIGFSAPSIAKTFGKTVPEALQTGTFFFIGMLIGAFVFGRLADRIGRRPVLMMAVVIDAFAGVASAFAPEFAWLLVLRFITGIGVGGTLPVDYTMMAEFLPSDRRGRWLVLLESFWAVGTIFLAILALVAVSWGDDAWRVIFFVTGLPALIGVVLRFYIPESPMFLNRNGKSEEARKVLQRVAKVNGTTAEIPALQPEKQERKSILALFNGDLRRRSLSLFLAWALISIAYYGVFVYLPVKLSSEGFAFMRGQVFLVVLALVQLPGFALSAYGVERWGRKPTLIGFLLLSAVGCMFYSLGSSPFVVIGSTLLMSFSLLGTWGALYAFTPEVYPTDLRASGMGMAGAVARFGGLFAPAIIAPIMATHFTLALAVLSAMLVGGALSIWAVDVESRNRALD</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="48" xmlns="http://uniprot.org/uniprot">
    <accession>A9BV41</accession>
    <name>A9BV41_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">TadE family protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_2065</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX34705.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012203988.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_2065"/>
    <dbReference type="PRIDE" id="A9BV41"/>
    <dbReference type="EnsemblBacteria" id="ABX34705">
        <property type="protein sequence ID" value="ABX34705"/>
        <property type="gene ID" value="Daci_2065"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_2065"/>
    <dbReference type="eggNOG" id="COG4961">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_129220_0_0_4"/>
    <dbReference type="OMA" id="YYGVMLA"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012495">
        <property type="entry name" value="TadE"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07811">
        <property type="entry name" value="TadE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="21"/>
            <end position="46"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX34705.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="171" mass="18784" checksum="591DB388545063BF" modified="2008-01-15" version="1">MTRRQPRAHRPHRSASLRQRGVYALEWAIIFPVFFALLYACISYGLAFLVRESMQAAAEDAARATLRYQTSRSARLDAARSLVQQRLDWLPADLRPTAGSIDVRICRLQNSELCSATLTCGVLVAERCMVRVGFTIPYGTSPIAPALPGFGLVMPTTLTASANIMVDRGGL</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="78" xmlns="http://uniprot.org/uniprot">
    <accession>A9BV82</accession>
    <name>A9BV82_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="12">Malate dehydrogenase (Oxaloacetate-decarboxylating) (NADP(+)), Phosphate acetyltransferase</fullName>
            <ecNumber evidence="12">1.1.1.40</ecNumber>
            <ecNumber evidence="12">2.3.1.8</ecNumber>
        </submittedName>
    </protein>
    <gene>
        <name evidence="12" type="ordered locus">Daci_2106</name>
    </gene>
    <organism evidence="12 13">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="12 13" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="13">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="13" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="13">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </cofactor>
    </comment>
    <comment type="similarity">
        <text evidence="3">In the C-terminal section; belongs to the phosphate acetyltransferase and butyryltransferase family.</text>
    </comment>
    <comment type="similarity">
        <text evidence="2">In the N-terminal section; belongs to the malic enzymes family.</text>
    </comment>
    <dbReference type="EC" id="1.1.1.40" evidence="12"/>
    <dbReference type="EC" id="2.3.1.8" evidence="12"/>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX34746.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012204029.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_2106"/>
    <dbReference type="PRIDE" id="A9BV82"/>
    <dbReference type="EnsemblBacteria" id="ABX34746">
        <property type="protein sequence ID" value="ABX34746"/>
        <property type="gene ID" value="Daci_2106"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_2106"/>
    <dbReference type="eggNOG" id="COG0280">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="eggNOG" id="COG0281">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_012366_0_0_4"/>
    <dbReference type="OMA" id="KPVHILN"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004471">
        <property type="term" value="F:malate dehydrogenase (decarboxylating) (NAD+) activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004473">
        <property type="term" value="F:malate dehydrogenase (decarboxylating) (NADP+) activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051287">
        <property type="term" value="F:NAD binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008948">
        <property type="term" value="F:oxaloacetate decarboxylase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008959">
        <property type="term" value="F:phosphate acetyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006108">
        <property type="term" value="P:malate metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd05311">
        <property type="entry name" value="NAD_bind_2_malic_enz"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.10380">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.10750">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.10950">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR046346">
        <property type="entry name" value="Aminiacid_DH-like_N_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012301">
        <property type="entry name" value="Malic_N_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037062">
        <property type="entry name" value="Malic_N_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012302">
        <property type="entry name" value="Malic_NAD-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045213">
        <property type="entry name" value="Malic_NAD-bd_bact_type"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012188">
        <property type="entry name" value="ME_PTA"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036291">
        <property type="entry name" value="NAD(P)-bd_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR042113">
        <property type="entry name" value="P_AcTrfase_dom1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR042112">
        <property type="entry name" value="P_AcTrfase_dom2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002505">
        <property type="entry name" value="PTA_PTB"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00390">
        <property type="entry name" value="malic"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03949">
        <property type="entry name" value="Malic_M"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01515">
        <property type="entry name" value="PTA_PTB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF036684">
        <property type="entry name" value="ME_PTA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM01274">
        <property type="entry name" value="malic"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00919">
        <property type="entry name" value="Malic_M"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51735">
        <property type="entry name" value="SSF51735"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53223">
        <property type="entry name" value="SSF53223"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="12" id="KW-0012">Acyltransferase</keyword>
    <keyword evidence="7" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="5" id="KW-0511">Multifunctional enzyme</keyword>
    <keyword evidence="8" id="KW-0521">NADP</keyword>
    <keyword evidence="4 12" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="13" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="12" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="malic" evidence="11">
        <location>
            <begin position="25"/>
            <end position="158"/>
        </location>
    </feature>
    <feature type="domain" description="Malic_M" evidence="10">
        <location>
            <begin position="170"/>
            <end position="407"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="9">
        <location>
            <begin position="1"/>
            <end position="35"/>
        </location>
    </feature>
    <feature type="active site" description="Proton acceptor" evidence="6">
        <location>
            <position position="101"/>
        </location>
    </feature>
    <feature type="binding site" evidence="8">
        <location>
            <begin position="83"/>
            <end position="90"/>
        </location>
        <ligand>
            <name>NADP(+)</name>
            <dbReference type="ChEBI" id="CHEBI:58349"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <position position="143"/>
        </location>
        <ligand>
            <name>a divalent metal cation</name>
            <dbReference type="ChEBI" id="CHEBI:60240"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <position position="144"/>
        </location>
        <ligand>
            <name>a divalent metal cation</name>
            <dbReference type="ChEBI" id="CHEBI:60240"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="8">
        <location>
            <position position="169"/>
        </location>
        <ligand>
            <name>NADP(+)</name>
            <dbReference type="ChEBI" id="CHEBI:58349"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="8">
        <location>
            <position position="294"/>
        </location>
        <ligand>
            <name>NADP(+)</name>
            <dbReference type="ChEBI" id="CHEBI:58349"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001946"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00007686"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00008756"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023002"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023268"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="PIRSR" id="PIRSR036684-1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="PIRSR" id="PIRSR036684-2"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="PIRSR" id="PIRSR036684-3"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="10">
        <source>
            <dbReference type="SMART" id="SM00919"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="11">
        <source>
            <dbReference type="SMART" id="SM01274"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="EMBL" id="ABX34746.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="13">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="765" mass="81428" checksum="FB7685B724FBDD8D" modified="2008-01-15" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="70" xmlns="http://uniprot.org/uniprot">
    <accession>A9BVB9</accession>
    <name>A9BVB9_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="7">Rieske (2Fe-2S) domain protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ordered locus">Daci_2143</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="8" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the bacterial ring-hydroxylating dioxygenase alpha subunit family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX34783.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_2143"/>
    <dbReference type="PRIDE" id="A9BVB9"/>
    <dbReference type="EnsemblBacteria" id="ABX34783">
        <property type="protein sequence ID" value="ABX34783"/>
        <property type="gene ID" value="Daci_2143"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_2143"/>
    <dbReference type="eggNOG" id="COG4638">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_039484_1_2_4"/>
    <dbReference type="OMA" id="YNTEGKC"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051537">
        <property type="term" value="F:2 iron, 2 sulfur cluster binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005506">
        <property type="term" value="F:iron ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016491">
        <property type="term" value="F:oxidoreductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.102.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017941">
        <property type="entry name" value="Rieske_2Fe-2S"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036922">
        <property type="entry name" value="Rieske_2Fe-2S_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015881">
        <property type="entry name" value="Ring-hydroxy_dOase_2Fe2S_BS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR044043">
        <property type="entry name" value="VanA_C_cat"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00355">
        <property type="entry name" value="Rieske"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF19112">
        <property type="entry name" value="VanA_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50022">
        <property type="entry name" value="SSF50022"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51296">
        <property type="entry name" value="RIESKE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00570">
        <property type="entry name" value="RING_HYDROXYL_ALPHA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-0408">Iron</keyword>
    <keyword evidence="5" id="KW-0411">Iron-sulfur</keyword>
    <keyword evidence="2" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="3" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Rieske" evidence="6">
        <location>
            <begin position="44"/>
            <end position="147"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00008751"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023002"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023004"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023014"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="PROSITE" id="PS51296"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="ABX34783.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="372" mass="41045" checksum="9A0CDBE1C44467B9" modified="2008-01-15" version="1">MRSTVAVPVLRIEWVYARSQPRPARRRGTDRQQEIPPMIEKSLWHPVAQAHEVVDAPLGVQLLDQPLVLWRDPQGLVRVFVDRCPHRGARLSMGRVENGHLECPYHGWQFADSGQCVKVPALPSFTPPPSQCVKAFEAQEAYGLVWVRLATGEELSAVPALAALAALPAFEAEADAHLRKLNCGPYDVAASAPRIIENFLDMSHFGFVHEGWLGSRDATAIEAYAVETTATGVLATGCKAVQPQSNLHSTSAAEVEYTYEVTAPYAAVLTKLPESGTTRAGWRESIALFICPVTPETSRVWFRLAVADFDSPDAQLQEFQHTIFCQDQPVLESQQPKCLPLDPRAEMHSAADRMSSAYRRYLRASGITFGVC</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="57" xmlns="http://uniprot.org/uniprot">
    <accession>A9BVT5</accession>
    <name>A9BVT5_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="9">Type III effector Hrp-dependent outers</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="9" type="ordered locus">Daci_2810</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="9 10" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="10" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the four-carbon acid sugar kinase family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX35448.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012204658.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_2810"/>
    <dbReference type="PRIDE" id="A9BVT5"/>
    <dbReference type="EnsemblBacteria" id="ABX35448">
        <property type="protein sequence ID" value="ABX35448"/>
        <property type="gene ID" value="Daci_2810"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_2810"/>
    <dbReference type="eggNOG" id="COG3395">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_029424_1_0_4"/>
    <dbReference type="OMA" id="CSVMTNK"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016301">
        <property type="term" value="F:kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005975">
        <property type="term" value="P:carbohydrate metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016310">
        <property type="term" value="P:phosphorylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.10840">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.980.20">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037051">
        <property type="entry name" value="4-carb_acid_sugar_kinase_N_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010737">
        <property type="entry name" value="DUF1537"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR031475">
        <property type="entry name" value="NBD_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR042213">
        <property type="entry name" value="NBD_C_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF17042">
        <property type="entry name" value="NBD_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07005">
        <property type="entry name" value="SBD_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="6" id="KW-0119">Carbohydrate metabolism</keyword>
    <keyword evidence="4" id="KW-0418">Kinase</keyword>
    <keyword evidence="3" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="SBD_N" evidence="7">
        <location>
            <begin position="5"/>
            <end position="231"/>
        </location>
    </feature>
    <feature type="domain" description="NBD_C" evidence="8">
        <location>
            <begin position="257"/>
            <end position="417"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00005715"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022777"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023277"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="Pfam" id="PF07005"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="Pfam" id="PF17042"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="ABX35448.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="427" mass="43464" checksum="F8CA3EBF50ECBA68" modified="2008-01-15" version="1">MTLLLGCIADDFTGATDLANNLVRAGMRVVQSIGVPAGPVDEGVDAVVVALKSRTIAPADAIAQSLQALQWLQAQGANGRAPQIYFKYCSTFDSTPQGNIGPVADALMDALGCEFTIATPAFPDNQRTVFKGHLFVGDVLLSDSGMRNHPLTPMTDANLVRVLQAQTGRKVGLIDHVAVAQGEAAIRARIAALQAEGVGMAVVDAVSNDDLLRLGPALAGMPLVTAGSGVAIGLPANFGIQPTAQAAALPTATGLQAVVSGSCSAATNAQVAHFIASGRPALALEPLRIAAGEDEAGKALAWARQHIASGPVLIYSTAESSAVKAVQGHLGVEQAGALVEQTIAAIARGLVEMGVRQLVVAGGETSGACVQALGIEQMRIGPQIDPGVPWCHAASPLAPQGLHLTLKSGNFGTTDFFTKAFGALASA</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="33" xmlns="http://uniprot.org/uniprot">
    <accession>A9BW18</accession>
    <name>A9BW18_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Daci_3196</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="2" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX35834.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012205034.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_3196"/>
    <dbReference type="PRIDE" id="A9BW18"/>
    <dbReference type="EnsemblBacteria" id="ABX35834">
        <property type="protein sequence ID" value="ABX35834"/>
        <property type="gene ID" value="Daci_3196"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_3196"/>
    <dbReference type="HOGENOM" id="CLU_2600282_0_0_4"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ABX35834.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="79" mass="9206" checksum="4E4CEDCE67FACB95" modified="2008-01-15" version="1">MTHAEIIAAWNAQADHMNQWPVLSEQEKVEWAWNCALEKAAKVCDDQDVPREFFRDQSWPYEKACNDLADAIRAMKDKP</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="81" xmlns="http://uniprot.org/uniprot">
    <accession>A9BW90</accession>
    <name>A9BW90_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="4">RNA polymerase, sigma-24 subunit, ECF subfamily</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ordered locus">Daci_3268</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="5" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the sigma-70 factor family. ECF subfamily.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX35906.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_3268"/>
    <dbReference type="PRIDE" id="A9BW90"/>
    <dbReference type="EnsemblBacteria" id="ABX35906">
        <property type="protein sequence ID" value="ABX35906"/>
        <property type="gene ID" value="Daci_3268"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_3268"/>
    <dbReference type="eggNOG" id="COG1595">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_047691_12_1_4"/>
    <dbReference type="OMA" id="RYMAQAM"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016987">
        <property type="term" value="F:sigma factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006352">
        <property type="term" value="P:DNA-templated transcription, initiation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0050896">
        <property type="term" value="P:response to stimulus"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR039425">
        <property type="entry name" value="RNA_pol_sigma-70-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014284">
        <property type="entry name" value="RNA_pol_sigma-70_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007627">
        <property type="entry name" value="RNA_pol_sigma70_r2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013249">
        <property type="entry name" value="RNA_pol_sigma70_r4_t2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013325">
        <property type="entry name" value="RNA_pol_sigma_r2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013324">
        <property type="entry name" value="RNA_pol_sigma_r3/r4-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43133">
        <property type="entry name" value="PTHR43133"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04542">
        <property type="entry name" value="Sigma70_r2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08281">
        <property type="entry name" value="Sigma70_r4_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF88659">
        <property type="entry name" value="SSF88659"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF88946">
        <property type="entry name" value="SSF88946"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR02937">
        <property type="entry name" value="sigma70-ECF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Sigma70_r2" evidence="2">
        <location>
            <begin position="8"/>
            <end position="75"/>
        </location>
    </feature>
    <feature type="domain" description="Sigma70_r4_2" evidence="3">
        <location>
            <begin position="105"/>
            <end position="158"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00010641"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF04542"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF08281"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="ABX35906.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="163" mass="17998" checksum="058EA88433A53B48" modified="2008-01-15" version="1">MHREISTLYAGHHGWLQGWLRRRLGNACDAADLAQDTFIRLLTAPAGDLPALREPRAYLATVARRLLINHLRRQSLEQAWLQALAALPAPQAPSPEQQLLILQALQEVDAMLDGLPPKVRAVFILSQVEGLTYAAIAEQLGMGLRSVKRYMAQAMAECILLSA</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="71" xmlns="http://uniprot.org/uniprot">
    <accession>A9BWL5</accession>
    <name>A9BWL5_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="3">2-dehydro-3-deoxyglucarate aldolase</fullName>
            <ecNumber evidence="3">4.1.2.20</ecNumber>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Daci_3911</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="4" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EC" id="4.1.2.20" evidence="3"/>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX36542.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_3911"/>
    <dbReference type="PRIDE" id="A9BWL5"/>
    <dbReference type="EnsemblBacteria" id="ABX36542">
        <property type="protein sequence ID" value="ABX36542"/>
        <property type="gene ID" value="Daci_3911"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_3911"/>
    <dbReference type="eggNOG" id="COG3836">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_059964_1_0_4"/>
    <dbReference type="OMA" id="NEGWMVK"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008672">
        <property type="term" value="F:2-dehydro-3-deoxyglucarate aldolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.20.20.60">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005000">
        <property type="entry name" value="Aldolase/citrate-lyase_domain"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015813">
        <property type="entry name" value="Pyrv/PenolPyrv_Kinase-like_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR040442">
        <property type="entry name" value="Pyrv_Kinase-like_dom_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03328">
        <property type="entry name" value="HpcH_HpaI"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51621">
        <property type="entry name" value="SSF51621"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-0456">Lyase</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HpcH_HpaI" evidence="2">
        <location>
            <begin position="27"/>
            <end position="258"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="272"/>
            <end position="293"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF03328"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ABX36542.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="293" mass="30928" checksum="2C0C4BC89DE72CEB" modified="2008-01-15" version="1">MNSFRRAPMSMLPANTFKRALREARPQIGLWSTIPSPFVCEMIGGAGYDWVLLDTEHTPTDVPLMLGQLQAVAAALPAPGALPVHAVVRPACNDAVLIKRYLDLGAQSLLLPFVQNAQQARDAVRAMRYAPQGMRGMGGSTRAANFGRTADYVARAADELCLLVQVETAEALEQIEAIAAVDGVDGIFIGPADLSASLGYPGQARHPVVNRAIDQAIARIRACGKAPGILMVDEARARECLELGAQFVAVALDTLLLRDGLDAAAARFRKGPLAANPPGPASTAGSYRGAPQP</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="60" xmlns="http://uniprot.org/uniprot">
    <accession>A9BWM6</accession>
    <name>A9BWM6_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="7">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ordered locus">Daci_3922</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="8" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the UPF0187 family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX36553.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012205747.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_3922"/>
    <dbReference type="PRIDE" id="A9BWM6"/>
    <dbReference type="EnsemblBacteria" id="ABX36553">
        <property type="protein sequence ID" value="ABX36553"/>
        <property type="gene ID" value="Daci_3922"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_3922"/>
    <dbReference type="eggNOG" id="COG3781">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_029790_4_2_4"/>
    <dbReference type="OMA" id="KLWGALL"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005254">
        <property type="term" value="F:chloride channel activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR021134">
        <property type="entry name" value="Bestrophin/UPF0187"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR044669">
        <property type="entry name" value="UPF0187"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33281">
        <property type="entry name" value="PTHR33281"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01062">
        <property type="entry name" value="Bestrophin"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5 6" id="KW-0472">Membrane</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 6" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="4 6" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="20"/>
            <end position="41"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="53"/>
            <end position="70"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="218"/>
            <end position="249"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00006514"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="ABX36553.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="303" mass="33511" checksum="0690BD0A8F28720E" modified="2008-01-15" version="1">MIIRPRPHWLRMLFVLRGSVLPDILPQLMAATLFAVLVTALHGQLFAWKVPLNFVPFSLIGLTLAIFLGFRNSTSYARYWEARTLWGTLLNETRSLVRQARTLTDVPQHAPALAMVLAAFVHALRHQLRGTDAAADMRRLLPAADCERLATARFKPAVLLLMAGEWLQARRQDGSLQPVLVPAMEAPLCKLGEALGGCERIAGTPIPFTYAVIIHRTIYLYCLLLPFGLVDSIGFMTPVIVAFIAYTFFALEALGAELEEPFGTAPNDLALDAMSQMIEATLRELTGEVLPPAPQHKDVLFLT</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="82" xmlns="http://uniprot.org/uniprot">
    <accession>A9BWW3</accession>
    <name>A9BWW3_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Transcriptional regulator, LysR family</fullName>
            <ecNumber evidence="3">4.2.1.1</ecNumber>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Daci_4317</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="4" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the LysR transcriptional regulatory family.</text>
    </comment>
    <dbReference type="EC" id="4.2.1.1" evidence="3"/>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX36948.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012206120.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_4317"/>
    <dbReference type="PRIDE" id="A9BWW3"/>
    <dbReference type="EnsemblBacteria" id="ABX36948">
        <property type="protein sequence ID" value="ABX36948"/>
        <property type="gene ID" value="Daci_4317"/>
    </dbReference>
    <dbReference type="GeneID" id="60688588"/>
    <dbReference type="KEGG" id="dac:Daci_4317"/>
    <dbReference type="eggNOG" id="COG0583">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_039613_16_3_4"/>
    <dbReference type="OMA" id="PEWEFIS"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004089">
        <property type="term" value="F:carbonate dehydratase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003700">
        <property type="term" value="F:DNA-binding transcription factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005119">
        <property type="entry name" value="LysR_subst-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000847">
        <property type="entry name" value="Tscrpt_reg_HTH_LysR"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036390">
        <property type="entry name" value="WH_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00126">
        <property type="entry name" value="HTH_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03466">
        <property type="entry name" value="LysR_substrate"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00039">
        <property type="entry name" value="HTHLYSR"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46785">
        <property type="entry name" value="SSF46785"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50931">
        <property type="entry name" value="HTH_LYSR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-0456">Lyase</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HTH lysR-type" evidence="2">
        <location>
            <begin position="1"/>
            <end position="58"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00009437"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS50931"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ABX36948.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="296" mass="32555" checksum="348D7D442056FA5B" modified="2008-01-15" version="1">MDLNAVHLLIKVAESRSFTQAATLLGTSQPRISRAVAQLEKDLGTRLLHRNTRSVSLTPDGCALVDRCAPLIAGLEEARQLVSDRRCAPSGVLRMTAPSMLGRIVLVPLLGQLLREHPQLQIDTSFTDRMVDMVEEGFDAAVRIGPLADSRMIARALPPLRWVTVASPAYLAARGTPQTLQELAQHSCMAVYNHYLGRRVPWQFLAGNGEMLDWPAPQTVTFDSGDPLVEGSLGGLGVAQVMEFAVREHLQAGRLVRLLPQHEGRARELSLVYPRTRQASPRIKALAQLLLAQTQW</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="81" xmlns="http://uniprot.org/uniprot">
    <accession>A9BWX0</accession>
    <name>A9BWX0_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Transcriptional regulator, LysR family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Daci_4324</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="4" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the LysR transcriptional regulatory family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX36955.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012206127.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_4324"/>
    <dbReference type="PRIDE" id="A9BWX0"/>
    <dbReference type="EnsemblBacteria" id="ABX36955">
        <property type="protein sequence ID" value="ABX36955"/>
        <property type="gene ID" value="Daci_4324"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_4324"/>
    <dbReference type="eggNOG" id="COG0583">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_039613_39_3_4"/>
    <dbReference type="OMA" id="FAYQQAW"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003700">
        <property type="term" value="F:DNA-binding transcription factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005119">
        <property type="entry name" value="LysR_subst-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000847">
        <property type="entry name" value="Tscrpt_reg_HTH_LysR"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036390">
        <property type="entry name" value="WH_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00126">
        <property type="entry name" value="HTH_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03466">
        <property type="entry name" value="LysR_substrate"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00039">
        <property type="entry name" value="HTHLYSR"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46785">
        <property type="entry name" value="SSF46785"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50931">
        <property type="entry name" value="HTH_LYSR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HTH lysR-type" evidence="2">
        <location>
            <begin position="7"/>
            <end position="64"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00009437"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS50931"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ABX36955.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="309" mass="34175" checksum="C33EE714F2561BB0" modified="2008-01-15" version="1">MDELRRIDLNLLLALHALLAEKHVTRAALRLHKSQPAMSHSLAQLREHLGDPLLVRRGGRMALTARAQGLVQPLADALGSLNGLLAQAEFDPAHARGRLRLALSDYASRIVLPPLMRHLRQHAPGLDLAISQSTREVMLAQLADGELDLALGPFPYAPDLPEGIEVQDLFQEQFVSVADQAVLPARGGLSLPDWLQRPHVMLAMRPDASEEIERALAAQGLSRRVVLALPHWSAALEVLAGTDLVLTVGSRAIGDLRRHKTLRRFAPPLELPRFAYQQAWHVRKQGDAMHRWLRNSMAQCCTAQGQTQK</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-01-19" version="47" xmlns="http://uniprot.org/uniprot">
    <accession>A9BWZ1</accession>
    <name>A9BWZ1_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_4345</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX36976.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012206148.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_4345"/>
    <dbReference type="EnsemblBacteria" id="ABX36976">
        <property type="protein sequence ID" value="ABX36976"/>
        <property type="gene ID" value="Daci_4345"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_4345"/>
    <dbReference type="eggNOG" id="ENOG5032XPC">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_1530144_0_0_4"/>
    <dbReference type="OMA" id="PPMILEH"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="134"/>
            <end position="175"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="149"/>
            <end position="163"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX36976.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="175" mass="18928" checksum="EA0DE70B419998A6" modified="2008-01-15" version="1">MDSSPPRAYGVFKPVGHMVVSFPTAAQADDGVAALQALELPAQDIQRYSDREMLAQIDEDLRQASPVAAVGQELNLVKAHQALAERGYHWLVVRVDNDEAARTAADALKAAGAERAQLYGRFIIEELIEHAADLPQVSESPDRGLDAQTPSGHEAERAELRPASDQDTAPAKPRL</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="63" xmlns="http://uniprot.org/uniprot">
    <accession>A9BX39</accession>
    <name>A9BX39_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Metallophosphoesterase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Daci_4393</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="4" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX37024.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_4393"/>
    <dbReference type="PRIDE" id="A9BX39"/>
    <dbReference type="EnsemblBacteria" id="ABX37024">
        <property type="protein sequence ID" value="ABX37024"/>
        <property type="gene ID" value="Daci_4393"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_4393"/>
    <dbReference type="eggNOG" id="COG1409">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_016569_0_0_4"/>
    <dbReference type="OMA" id="HIGGHMH"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016787">
        <property type="term" value="F:hydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.60.21.10">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004843">
        <property type="entry name" value="Calcineurin-like_PHP_ApaH"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029052">
        <property type="entry name" value="Metallo-depent_PP-like"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00149">
        <property type="entry name" value="Metallophos"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56300">
        <property type="entry name" value="SSF56300"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="1">
        <location>
            <begin position="1"/>
            <end position="18"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5002736125" evidence="1">
        <location>
            <begin position="19"/>
            <end position="704"/>
        </location>
    </feature>
    <feature type="domain" description="Metallophos" evidence="2">
        <location>
            <begin position="37"/>
            <end position="183"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF00149"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ABX37024.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="704" mass="76788" checksum="4C987857275F151E" modified="2008-01-15" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="62" xmlns="http://uniprot.org/uniprot">
    <accession>A9BX45</accession>
    <name>A9BX45_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="5">Cytochrome c domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="6" type="ordered locus">Daci_4399</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="7" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX37030.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_4399"/>
    <dbReference type="PRIDE" id="A9BX45"/>
    <dbReference type="EnsemblBacteria" id="ABX37030">
        <property type="protein sequence ID" value="ABX37030"/>
        <property type="gene ID" value="Daci_4399"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_4399"/>
    <dbReference type="eggNOG" id="COG2010">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_136058_0_0_4"/>
    <dbReference type="OMA" id="NDYPGVI"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009055">
        <property type="term" value="F:electron transfer activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0020037">
        <property type="term" value="F:heme binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.760.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009056">
        <property type="entry name" value="Cyt_c-like_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036909">
        <property type="entry name" value="Cyt_c-like_dom_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00034">
        <property type="entry name" value="Cytochrom_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46626">
        <property type="entry name" value="SSF46626"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51007">
        <property type="entry name" value="CYTC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1 4" id="KW-0349">Heme</keyword>
    <keyword evidence="3 4" id="KW-0408">Iron</keyword>
    <keyword evidence="2 4" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Cytochrome c" evidence="5">
        <location>
            <begin position="10"/>
            <end position="109"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022617"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023004"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00433"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="PROSITE" id="PS51007"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="ABX37030.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="112" mass="12253" checksum="43D9A5D5D5024118" modified="2008-01-15" version="1">MAIQASPCFADNSNGKQLYSSRCAMCHGADARGTGPLANKSNPPTPDLTTAAFRKRLHDYPGVIVSSVILRPNGDLIPRTLRENGVKVPPHAWTVKDFRDLNEYFSGLITKK</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="39" xmlns="http://uniprot.org/uniprot">
    <accession>A9BX65</accession>
    <name>A9BX65_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Daci_5512</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="2" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX38141.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_5512"/>
    <dbReference type="PRIDE" id="A9BX65"/>
    <dbReference type="EnsemblBacteria" id="ABX38141">
        <property type="protein sequence ID" value="ABX38141"/>
        <property type="gene ID" value="Daci_5512"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_5512"/>
    <dbReference type="eggNOG" id="COG3170">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_249382_0_0_4"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ABX38141.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="1486" mass="152842" checksum="1C30FD13882ACEB4" modified="2008-01-15" version="1"> </sequence>
</entry>
<entry dataset="Swiss-Prot" created="2009-03-24" modified="2022-08-03" version="66" xmlns="http://uniprot.org/uniprot">
    <accession>A9BXD6</accession>
    <name>CYAY_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Iron-sulfur cluster assembly protein CyaY</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="1" type="primary">cyaY</name>
        <name type="ordered locus">Daci_5583</name>
    </gene>
    <organism>
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference key="1">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain>DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="1">Involved in iron-sulfur (Fe-S) cluster assembly. May act as a regulator of Fe-S biogenesis.</text>
    </comment>
    <comment type="similarity">
        <text evidence="1">Belongs to the frataxin family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX38212.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012207381.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A9BXD6"/>
    <dbReference type="SMR" id="A9BXD6"/>
    <dbReference type="STRING" id="398578.Daci_5583"/>
    <dbReference type="PRIDE" id="A9BXD6"/>
    <dbReference type="EnsemblBacteria" id="ABX38212">
        <property type="protein sequence ID" value="ABX38212"/>
        <property type="gene ID" value="Daci_5583"/>
    </dbReference>
    <dbReference type="GeneID" id="60689934"/>
    <dbReference type="KEGG" id="dac:Daci_5583"/>
    <dbReference type="eggNOG" id="COG1965">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_080880_3_0_4"/>
    <dbReference type="OMA" id="EPMHEIW"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008199">
        <property type="term" value="F:ferric iron binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016226">
        <property type="term" value="P:iron-sulfur cluster assembly"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.920.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00142">
        <property type="entry name" value="CyaY"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002908">
        <property type="entry name" value="Frataxin/CyaY"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036524">
        <property type="entry name" value="Frataxin/CyaY_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01491">
        <property type="entry name" value="Frataxin_Cyay"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM01219">
        <property type="entry name" value="Frataxin_Cyay"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55387">
        <property type="entry name" value="SSF55387"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR03421">
        <property type="entry name" value="FeS_CyaY"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50810">
        <property type="entry name" value="FRATAXIN_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword id="KW-0408">Iron</keyword>
    <keyword id="KW-0479">Metal-binding</keyword>
    <keyword id="KW-1185">Reference proteome</keyword>
    <feature type="chain" id="PRO_1000096243" description="Iron-sulfur cluster assembly protein CyaY">
        <location>
            <begin position="1"/>
            <end position="112"/>
        </location>
    </feature>
    <evidence type="ECO:0000255" key="1">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00142"/>
        </source>
    </evidence>
    <sequence length="112" mass="12509" checksum="D4CE0DEAE88147BD" modified="2008-01-15" version="1">MTDQEFLDLAERLLLAVEQDCDRINDETDADLDAQRVGGMVTLVFANRSQIVINQQKPLHEIWLAAKAGGFHYRYDAAQGAWLDTKGAGEFFANLSRYATEQSGLALQFSAR</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="78" xmlns="http://uniprot.org/uniprot">
    <accession>A9BXE8</accession>
    <name>A9BXE8_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="6">Binding-protein-dependent transport systems inner membrane component</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ordered locus">Daci_5595</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="7" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="4">Cell membrane</location>
            <topology evidence="4">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="4">Belongs to the binding-protein-dependent transport system permease family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX38224.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012207393.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_5595"/>
    <dbReference type="PRIDE" id="A9BXE8"/>
    <dbReference type="EnsemblBacteria" id="ABX38224">
        <property type="protein sequence ID" value="ABX38224"/>
        <property type="gene ID" value="Daci_5595"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_5595"/>
    <dbReference type="eggNOG" id="COG1175">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_016047_0_3_4"/>
    <dbReference type="OMA" id="WLSVFNT"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0055085">
        <property type="term" value="P:transmembrane transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd06261">
        <property type="entry name" value="TM_PBP2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.3720.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000515">
        <property type="entry name" value="MetI-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035906">
        <property type="entry name" value="MetI-like_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00528">
        <property type="entry name" value="BPD_transp_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF161098">
        <property type="entry name" value="SSF161098"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50928">
        <property type="entry name" value="ABC_TM1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3 4" id="KW-0472">Membrane</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1 4" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="2 4" id="KW-1133">Transmembrane helix</keyword>
    <keyword evidence="4" id="KW-0813">Transport</keyword>
    <feature type="transmembrane region" description="Helical" evidence="4">
        <location>
            <begin position="21"/>
            <end position="45"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="4">
        <location>
            <begin position="83"/>
            <end position="102"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="4">
        <location>
            <begin position="114"/>
            <end position="131"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="4">
        <location>
            <begin position="163"/>
            <end position="184"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="4">
        <location>
            <begin position="220"/>
            <end position="245"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="4">
        <location>
            <begin position="265"/>
            <end position="289"/>
        </location>
    </feature>
    <feature type="domain" description="ABC transmembrane type-1" evidence="5">
        <location>
            <begin position="77"/>
            <end position="288"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="RuleBase" id="RU363032"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="PROSITE" id="PS50928"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="ABX38224.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="297" mass="33169" checksum="4623266617916553" modified="2008-01-15" version="1">MRADRTPERAASARRLLPRALMAPAVAVLLCWMLVPLLMTIYFSLVNYNLMQPGEHRFAGWDNYAFFITDPDFLPAVWNTLNFLASVVLITLVLGVLIALLINEPFPGRGVVRVLLISPFFVMPTVNALLWKHMMMNPIYGVLASLWRAVGLQPVDWLTEMPLLSVIVMVSWQWLPFACLIFITSLQSLDREQMEAARMDGANALQRFYYLTLPHLARPMAVVVMIEMIFLLSVFAEIAITTAGGPGNESTNLTYLIYKQSLMNFDVGVASAGALFAVVLANIVSLFLIRIVGKSLD</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="59" xmlns="http://uniprot.org/uniprot">
    <accession>A9BXF8</accession>
    <name>A9BXF8_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Daci_5605</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="2" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX38234.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_5605"/>
    <dbReference type="PRIDE" id="A9BXF8"/>
    <dbReference type="EnsemblBacteria" id="ABX38234">
        <property type="protein sequence ID" value="ABX38234"/>
        <property type="gene ID" value="Daci_5605"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_5605"/>
    <dbReference type="eggNOG" id="COG1335">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_067099_0_0_4"/>
    <dbReference type="OMA" id="IFHPIFW"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.850">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036380">
        <property type="entry name" value="Isochorismatase-like_sf"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52499">
        <property type="entry name" value="SSF52499"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ABX38234.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="324" mass="35885" checksum="45643A7B422AB572" modified="2008-01-15" version="1">MQAPPSWGFLREVSLAGTRVLASSLWRTALAHYTWTLVSVSLHPPTHSAKPMPSTTQLLVIDPQNDFCDLPEDWCPGGQRPSLPVTGAHADMQRLAGWIRREGARIDEIMVTLDSHQRYDIAHPAFWQQGDGSEVVPFTPITAAQVRAGVFRPRNAEALQRSLDYLDALEANSRYTLMVWPVHCEVGSWGHGIHADVLAACGDWQQQRQRAVYNVFKGLNPWTEHYSALLAEVPDPADPATLLNTALLERLGQADILVVAGEASSHCVRSTVEHLVEHLPHPERIVLMHDAMSPVPGFESAHHDFLAAMQARGLRLASSQELHL</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="67" xmlns="http://uniprot.org/uniprot">
    <accession>A9BXN4</accession>
    <name>A9BXN4_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="7">Porin, gram-negative type</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ordered locus">Daci_5682</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="8" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX38310.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012207479.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_5682"/>
    <dbReference type="PRIDE" id="A9BXN4"/>
    <dbReference type="EnsemblBacteria" id="ABX38310">
        <property type="protein sequence ID" value="ABX38310"/>
        <property type="gene ID" value="Daci_5682"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_5682"/>
    <dbReference type="eggNOG" id="COG3203">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_038238_1_1_4"/>
    <dbReference type="OMA" id="GFWLEGE"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046930">
        <property type="term" value="C:pore complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015288">
        <property type="term" value="F:porin activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006811">
        <property type="term" value="P:ion transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd00342">
        <property type="entry name" value="gram_neg_porins"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.160.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR033900">
        <property type="entry name" value="Gram_neg_porin_domain"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023614">
        <property type="entry name" value="Porin_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002299">
        <property type="entry name" value="Porin_Neis"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13609">
        <property type="entry name" value="Porin_4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00184">
        <property type="entry name" value="NEISSPPORIN"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-0406">Ion transport</keyword>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-0626">Porin</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="5" id="KW-0732">Signal</keyword>
    <keyword evidence="2" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1134">Transmembrane beta strand</keyword>
    <keyword evidence="4" id="KW-0813">Transport</keyword>
    <feature type="signal peptide" evidence="5">
        <location>
            <begin position="1"/>
            <end position="19"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5002733150" evidence="5">
        <location>
            <begin position="20"/>
            <end position="351"/>
        </location>
    </feature>
    <feature type="domain" description="Porin_4" evidence="6">
        <location>
            <begin position="7"/>
            <end position="318"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022452"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023065"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023114"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="Pfam" id="PF13609"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="ABX38310.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="351" mass="36760" checksum="E954699DF9B96059" modified="2008-01-15" version="1">MKKSLIALAVLAASGAAMAQSSVTLFGIVDTNVAYVNKDAAGDSRYGLGTSGASTSRLGLRGTEDLGGGLKAGFWLEGEIFGDDGNASGFNFKRRSTVSLSGNFGEVRLGRDLVPTFQKLTSYDLFSATGIGQFMGFRNWAAGQGADDNGIRANNLISYYTPNFGGFNAGFGYAFDEKQTIGTADSVGRYIGGYVAYDNGPLSASLGLAQQKTAVGGLATDRDEITLGASYNFGVAKLTGLLQQTKFKRDIGGDIKTNSYMLGASAPVGGVGEVKLQYALYDQKAIDSKAHQITLGYVHNLSKRTALYGNLAFLKNKDLSTLGLQAKGVYAGGVQAGESQTGVQVGIRHAF</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="68" xmlns="http://uniprot.org/uniprot">
    <accession>A9BXR1</accession>
    <name>A9BXR1_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Cyanophycin synthetase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Daci_5709</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="4" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX38337.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012207506.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_5709"/>
    <dbReference type="PRIDE" id="A9BXR1"/>
    <dbReference type="EnsemblBacteria" id="ABX38337">
        <property type="protein sequence ID" value="ABX38337"/>
        <property type="gene ID" value="Daci_5709"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_5709"/>
    <dbReference type="eggNOG" id="COG0189">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_016806_0_0_4"/>
    <dbReference type="OMA" id="LAYDRCQ"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016874">
        <property type="term" value="F:ligase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009059">
        <property type="term" value="P:macromolecule biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.1190.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011761">
        <property type="entry name" value="ATP-grasp"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005479">
        <property type="entry name" value="CbamoylP_synth_lsu-like_ATP-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011810">
        <property type="entry name" value="Cya_phycin_syn"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR044019">
        <property type="entry name" value="Cyanophycin_syn_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036565">
        <property type="entry name" value="Mur-like_cat_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02786">
        <property type="entry name" value="CPSase_L_D2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF18921">
        <property type="entry name" value="Cyanophycin_syn"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53623">
        <property type="entry name" value="SSF53623"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR02068">
        <property type="entry name" value="cya_phycin_syn"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50975">
        <property type="entry name" value="ATP_GRASP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="1" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="ATP-grasp" evidence="2">
        <location>
            <begin position="225"/>
            <end position="478"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00409"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS50975"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ABX38337.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="730" mass="78805" checksum="2E5FD4FF2A5F79CF" modified="2008-01-15" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="65" xmlns="http://uniprot.org/uniprot">
    <accession>A9BXX4</accession>
    <name>A9BXX4_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="3">AMP-dependent synthetase and ligase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Daci_1265</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="4" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX33909.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012203195.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_1265"/>
    <dbReference type="PRIDE" id="A9BXX4"/>
    <dbReference type="EnsemblBacteria" id="ABX33909">
        <property type="protein sequence ID" value="ABX33909"/>
        <property type="gene ID" value="Daci_1265"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_1265"/>
    <dbReference type="eggNOG" id="COG0318">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_000022_59_9_4"/>
    <dbReference type="OMA" id="HLAKMVP"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016874">
        <property type="term" value="F:ligase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.300.30">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.12780">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025110">
        <property type="entry name" value="AMP-bd_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045851">
        <property type="entry name" value="AMP-bd_C_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020845">
        <property type="entry name" value="AMP-binding_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000873">
        <property type="entry name" value="AMP-dep_Synth/Lig"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR042099">
        <property type="entry name" value="ANL_N_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00501">
        <property type="entry name" value="AMP-binding"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13193">
        <property type="entry name" value="AMP-binding_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00455">
        <property type="entry name" value="AMP_BINDING"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-0436">Ligase</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="AMP-binding" evidence="1">
        <location>
            <begin position="31"/>
            <end position="473"/>
        </location>
    </feature>
    <feature type="domain" description="AMP-binding_C" evidence="2">
        <location>
            <begin position="482"/>
            <end position="556"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF00501"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF13193"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ABX33909.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="566" mass="62085" checksum="76E64C0526B9F43E" modified="2008-01-15" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="72" xmlns="http://uniprot.org/uniprot">
    <accession>A9BXY7</accession>
    <name>A9BXY7_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="4 7">dTDP-4-dehydrorhamnose 3,5-epimerase</fullName>
            <ecNumber evidence="3 7">5.1.3.13</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="7">Thymidine diphospho-4-keto-rhamnose 3,5-epimerase</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="8" type="ordered locus">Daci_1278</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="9" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="2 7">Catalyzes the epimerization of the C3' and C5'positions of dTDP-6-deoxy-D-xylo-4-hexulose, forming dTDP-6-deoxy-L-lyxo-4-hexulose.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="7">
            <text>dTDP-4-dehydro-6-deoxy-alpha-D-glucose = dTDP-4-dehydro-beta-L-rhamnose</text>
            <dbReference type="Rhea" id="RHEA:16969"/>
            <dbReference type="ChEBI" id="CHEBI:57649"/>
            <dbReference type="ChEBI" id="CHEBI:62830"/>
            <dbReference type="EC" id="5.1.3.13"/>
        </reaction>
    </comment>
    <comment type="pathway">
        <text evidence="7">Carbohydrate biosynthesis; dTDP-L-rhamnose biosynthesis.</text>
    </comment>
    <comment type="subunit">
        <text evidence="7">Homodimer.</text>
    </comment>
    <comment type="similarity">
        <text evidence="7">Belongs to the dTDP-4-dehydrorhamnose 3,5-epimerase family.</text>
    </comment>
    <dbReference type="EC" id="5.1.3.13" evidence="3 7"/>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX33922.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012203208.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_1278"/>
    <dbReference type="PRIDE" id="A9BXY7"/>
    <dbReference type="EnsemblBacteria" id="ABX33922">
        <property type="protein sequence ID" value="ABX33922"/>
        <property type="gene ID" value="Daci_1278"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_1278"/>
    <dbReference type="eggNOG" id="COG1898">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_090940_1_1_4"/>
    <dbReference type="OMA" id="KTPEIAC"/>
    <dbReference type="UniPathway" id="UPA00124"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008830">
        <property type="term" value="F:dTDP-4-dehydrorhamnose 3,5-epimerase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0019305">
        <property type="term" value="P:dTDP-rhamnose biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.120.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000888">
        <property type="entry name" value="dTDP_sugar_isom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014710">
        <property type="entry name" value="RmlC-like_jellyroll"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011051">
        <property type="entry name" value="RmlC_Cupin_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR21047">
        <property type="entry name" value="PTHR21047"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00908">
        <property type="entry name" value="dTDP_sugar_isom"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51182">
        <property type="entry name" value="SSF51182"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01221">
        <property type="entry name" value="rmlC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="7 8" id="KW-0413">Isomerase</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <feature type="active site" description="Proton acceptor" evidence="5">
        <location>
            <position position="62"/>
        </location>
    </feature>
    <feature type="active site" description="Proton donor" evidence="5">
        <location>
            <position position="132"/>
        </location>
    </feature>
    <feature type="site" description="Participates in a stacking interaction with the thymidine ring of dTDP-4-oxo-6-deoxyglucose" evidence="6">
        <location>
            <position position="138"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001298"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00001997"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00012098"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00019595"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="PIRSR" id="PIRSR600888-1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="PIRSR" id="PIRSR600888-3"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="RuleBase" id="RU364069"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="ABX33922.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="182" mass="20228" checksum="F2E256761544FC7F" modified="2008-01-15" version="1">MKATPQAIPEVMLIEPKVFGDDRGFFLESFNQQAFNQATGTDHQFVQDNHSRSKKGVLRGLHYQLPPHAQGKLVRVVRGAVFDVAVDIRKGSPTFGQWVGAELTEDNHRQLWVPPGFAHGFMVLSDSADFLYKATAFYAPQADRGIAWDDPAIGVQWPQLDVELSLSDKDLKQPLLADAELA</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="61" xmlns="http://uniprot.org/uniprot">
    <accession>A9BY06</accession>
    <name>A9BY06_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Transport-associated protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Daci_1297</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="4" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX33941.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012203227.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_1297"/>
    <dbReference type="CAZy" id="CBM50">
        <property type="family name" value="Carbohydrate-Binding Module Family 50"/>
    </dbReference>
    <dbReference type="PRIDE" id="A9BY06"/>
    <dbReference type="EnsemblBacteria" id="ABX33941">
        <property type="protein sequence ID" value="ABX33941"/>
        <property type="gene ID" value="Daci_1297"/>
    </dbReference>
    <dbReference type="GeneID" id="60685857"/>
    <dbReference type="KEGG" id="dac:Daci_1297"/>
    <dbReference type="eggNOG" id="COG1652">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_125377_0_0_4"/>
    <dbReference type="OMA" id="AQYHDVV"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="CDD" id="cd00118">
        <property type="entry name" value="LysM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.10.350.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007055">
        <property type="entry name" value="BON_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018392">
        <property type="entry name" value="LysM_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036779">
        <property type="entry name" value="LysM_dom_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04972">
        <property type="entry name" value="BON"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01476">
        <property type="entry name" value="LysM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00257">
        <property type="entry name" value="LysM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54106">
        <property type="entry name" value="SSF54106"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50914">
        <property type="entry name" value="BON"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51782">
        <property type="entry name" value="LYSM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="BON" evidence="1">
        <location>
            <begin position="28"/>
            <end position="98"/>
        </location>
    </feature>
    <feature type="domain" description="LysM" evidence="2">
        <location>
            <begin position="104"/>
            <end position="153"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS50914"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS51782"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ABX33941.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="156" mass="16632" checksum="874B26E774DB8DF7" modified="2008-01-15" version="1">MGLFSFIKEAGEKLFGGSAAQAAEPAQDLNAKAAKAIETYIGTQNLGVSDVKVQFDGSQGKVTVLGTAPTQAVKEKVTLCCGNVSSVQSVDNQMTVTNPEPEAQYHDVVRGDTLSAIAKKFYGDANKYPVIFEANKPMLSHPDKIYPGQKLRIPAI</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="38" xmlns="http://uniprot.org/uniprot">
    <accession>A9BY14</accession>
    <name>A9BY14_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="1">General secretory pathway protein K</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Daci_1305</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="2" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX33949.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012203235.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_1305"/>
    <dbReference type="PRIDE" id="A9BY14"/>
    <dbReference type="EnsemblBacteria" id="ABX33949">
        <property type="protein sequence ID" value="ABX33949"/>
        <property type="gene ID" value="Daci_1305"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_1305"/>
    <dbReference type="eggNOG" id="COG3156">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_090979_0_0_4"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ABX33949.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="262" mass="27234" checksum="FEB092E3D4D12DD1" modified="2008-01-15" version="1">MTGHSSFPVERGMALVLVLWIVAALAVFASSLGGVVRQEAAVGGVSRNLATGRAAGEAAIYLALQRMATRPEALREPVLEPVTLPGGQIVEVEVVPWSGLVDINGATPELLAVLFQHAAGLSQGAAMAMAQTVRQARDAMRQQSGSAAGGWEAPEDLLQVPGMTYGIYASIRDFVVADSGNRQGINPNAAPQPLRGWLESAGGAVPAQQGLSGTRYAITARVLFEGAGMVAVRRMVNVRSGAGVGRLPWSVLSASQSWIGKI</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="66" xmlns="http://uniprot.org/uniprot">
    <accession>A9BY70</accession>
    <name>A9BY70_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="7">Cytochrome c class I</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ordered locus">Daci_1565</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="8" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX34209.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012203495.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_1565"/>
    <dbReference type="PRIDE" id="A9BY70"/>
    <dbReference type="EnsemblBacteria" id="ABX34209">
        <property type="protein sequence ID" value="ABX34209"/>
        <property type="gene ID" value="Daci_1565"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_1565"/>
    <dbReference type="eggNOG" id="COG4654">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_123779_0_0_4"/>
    <dbReference type="OMA" id="IGWRIMR"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009055">
        <property type="term" value="F:electron transfer activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0020037">
        <property type="term" value="F:heme binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005506">
        <property type="term" value="F:iron ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.760.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009056">
        <property type="entry name" value="Cyt_c-like_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036909">
        <property type="entry name" value="Cyt_c-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002324">
        <property type="entry name" value="Cyt_c_ID"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00034">
        <property type="entry name" value="Cytochrom_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00606">
        <property type="entry name" value="CYTCHROMECID"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46626">
        <property type="entry name" value="SSF46626"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51007">
        <property type="entry name" value="CYTC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1 4" id="KW-0349">Heme</keyword>
    <keyword evidence="3 4" id="KW-0408">Iron</keyword>
    <keyword evidence="5" id="KW-0472">Membrane</keyword>
    <keyword evidence="2 4" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="5" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="5" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="22"/>
            <end position="43"/>
        </location>
    </feature>
    <feature type="domain" description="Cytochrome c" evidence="6">
        <location>
            <begin position="87"/>
            <end position="172"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022617"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023004"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00433"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="PROSITE" id="PS51007"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="ABX34209.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="179" mass="18802" checksum="BB17526E06CEB68D" modified="2008-01-15" version="1">MAGQLPPDADDEGDDAPHRPRWLGWALVVFMLLVALGVFNIGWRIMRGPAVAPVAPAAGLPAAAVTAAADPNAGAGAGTEAGTDAGPRLLAGKALVEGNDCLRCHGLVRHYVGPSFQQIAERYRAREDAADYLARKIREGGAGEWGRAIMPRHPHLDTAQSLQMAAWLLSLPSPESGKS</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="58" xmlns="http://uniprot.org/uniprot">
    <accession>A9BYF6</accession>
    <name>A9BYF6_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">PG_binding_3 domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_1652</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX34295.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012203580.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_1652"/>
    <dbReference type="CAZy" id="GH108">
        <property type="family name" value="Glycoside Hydrolase Family 108"/>
    </dbReference>
    <dbReference type="PRIDE" id="A9BYF6"/>
    <dbReference type="EnsemblBacteria" id="ABX34295">
        <property type="protein sequence ID" value="ABX34295"/>
        <property type="gene ID" value="Daci_1652"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_1652"/>
    <dbReference type="eggNOG" id="COG3926">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_082693_1_0_4"/>
    <dbReference type="OMA" id="QARYSGH"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008565">
        <property type="entry name" value="DUF847"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023346">
        <property type="entry name" value="Lysozyme-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018537">
        <property type="entry name" value="Peptidoglycan-bd_3"/>
    </dbReference>
    <dbReference type="Pfam" id="PF05838">
        <property type="entry name" value="Glyco_hydro_108"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF09374">
        <property type="entry name" value="PG_binding_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53955">
        <property type="entry name" value="SSF53955"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="PG_binding_3" evidence="1">
        <location>
            <begin position="88"/>
            <end position="148"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF09374"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX34295.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="158" mass="17479" checksum="D1178D8F6DE95A6E" modified="2008-01-15" version="1">MTYFDDCFERLIGHEGGYVSNPKDPGGETKFGISKRAYPGVDIKALTLAEAKAIYRRDYWDRARCDELPHGVAFDVFDGAVNSGIGQAIRWLQRAAGVADDGIVGPLTLAAVRRADPEAIQARYSGHRLDFMTRLSTWDTFGRGWARRVASNLQRVGA</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="47" xmlns="http://uniprot.org/uniprot">
    <accession>A9BYP3</accession>
    <name>A9BYP3_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Putative phage major head protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Daci_1946</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="2" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX34586.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012203871.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_1946"/>
    <dbReference type="PRIDE" id="A9BYP3"/>
    <dbReference type="EnsemblBacteria" id="ABX34586">
        <property type="protein sequence ID" value="ABX34586"/>
        <property type="gene ID" value="Daci_1946"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_1946"/>
    <dbReference type="eggNOG" id="ENOG502ZCEU">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_073270_0_0_4"/>
    <dbReference type="OMA" id="ALRCHNE"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035198">
        <property type="entry name" value="DUF5309"/>
    </dbReference>
    <dbReference type="Pfam" id="PF17236">
        <property type="entry name" value="DUF5309"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ABX34586.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="306" mass="33241" checksum="C4F009CB76D5273A" modified="2008-01-15" version="1">MAAPSGTFLTTAAIGNREDLTDVIYRISPTQTPTLNMASKAKATNTLHEWQTQDLAAAASNAAVEGDDAAAKTVTPTVRLNNRTQISTKTVRVSGTQRAMNPAGRKDELAYQLSLASLEIKRDMELDLTQSDVAATSPRKSRGLRGWVVDNVNRNGGTLADYVANTGYTPGTQRAFVESQVKDVLQKCYTAGGEPDTIMMPPAAKQTFSTFTGNATRMDKSEDSKLYASVDYYVSDFGTIQAVPNRFMATRDVFLLQSDKLAVAYLRPFQTTDIAKTGDSDAQQIIVEYTLECRAPKAHGAVYDIL</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="56" xmlns="http://uniprot.org/uniprot">
    <accession>A9BYU8</accession>
    <name>A9BYU8_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="4">CMP/dCMP deaminase zinc-binding</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ordered locus">Daci_2203</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="5" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX34843.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012204126.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_2203"/>
    <dbReference type="PRIDE" id="A9BYU8"/>
    <dbReference type="EnsemblBacteria" id="ABX34843">
        <property type="protein sequence ID" value="ABX34843"/>
        <property type="gene ID" value="Daci_2203"/>
    </dbReference>
    <dbReference type="GeneID" id="60686597"/>
    <dbReference type="KEGG" id="dac:Daci_2203"/>
    <dbReference type="eggNOG" id="COG0590">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_025810_5_2_4"/>
    <dbReference type="OMA" id="MCHAAMR"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016787">
        <property type="term" value="F:hydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008270">
        <property type="term" value="F:zinc ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016192">
        <property type="entry name" value="APOBEC/CMP_deaminase_Zn-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002125">
        <property type="entry name" value="CMP_dCMP_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016193">
        <property type="entry name" value="Cytidine_deaminase-like"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00383">
        <property type="entry name" value="dCMP_cyt_deam_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53927">
        <property type="entry name" value="SSF53927"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00903">
        <property type="entry name" value="CYT_DCMP_DEAMINASES_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51747">
        <property type="entry name" value="CYT_DCMP_DEAMINASES_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0862">Zinc</keyword>
    <feature type="domain" description="CMP/dCMP-type deaminase" evidence="3">
        <location>
            <begin position="1"/>
            <end position="117"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022833"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="PROSITE" id="PS51747"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="ABX34843.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="153" mass="16467" checksum="B209A99C439394E6" modified="2008-01-15" version="1">MQEQEHIRLLRHAVQLAHDNRLRGGRPFGALLAREGQILSTGVNEIVQSHDPSAHAEMQALRAGTRAQANPSLAGCTIYASGHPCPMCLAALVMAGAEQVFFAFDNADAQPYGLSSEGAYQRLRMPLQPPPLPLTRLDTGITAAQLYGNAPWA</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="93" xmlns="http://uniprot.org/uniprot">
    <accession>A9BZ27</accession>
    <name>A9BZ27_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="9">Glutamine--tRNA ligase</fullName>
            <ecNumber evidence="9">6.1.1.18</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="9">Glutaminyl-tRNA synthetase</fullName>
            <shortName evidence="9">GlnRS</shortName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="9" type="primary">glnS</name>
        <name evidence="13" type="ordered locus">Daci_2489</name>
    </gene>
    <organism evidence="13 14">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="13 14" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="14">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="14" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="14">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="1 9">
            <text>ATP + L-glutamine + tRNA(Gln) = AMP + diphosphate + L-glutaminyl-tRNA(Gln)</text>
            <dbReference type="Rhea" id="RHEA:20121"/>
            <dbReference type="Rhea" id="RHEA-COMP:9662"/>
            <dbReference type="Rhea" id="RHEA-COMP:9681"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:33019"/>
            <dbReference type="ChEBI" id="CHEBI:58359"/>
            <dbReference type="ChEBI" id="CHEBI:78442"/>
            <dbReference type="ChEBI" id="CHEBI:78521"/>
            <dbReference type="ChEBI" id="CHEBI:456215"/>
            <dbReference type="EC" id="6.1.1.18"/>
        </reaction>
    </comment>
    <comment type="subunit">
        <text evidence="9">Monomer.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="9">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2 9 10">Belongs to the class-I aminoacyl-tRNA synthetase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="9">Lacks conserved residue(s) required for the propagation of feature annotation.</text>
    </comment>
    <dbReference type="EC" id="6.1.1.18" evidence="9"/>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX35127.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_2489"/>
    <dbReference type="PRIDE" id="A9BZ27"/>
    <dbReference type="EnsemblBacteria" id="ABX35127">
        <property type="protein sequence ID" value="ABX35127"/>
        <property type="gene ID" value="Daci_2489"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_2489"/>
    <dbReference type="eggNOG" id="COG0008">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_001882_2_3_4"/>
    <dbReference type="OMA" id="INNFCAQ"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004819">
        <property type="term" value="F:glutamine-tRNA ligase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006425">
        <property type="term" value="P:glutaminyl-tRNA aminoacylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006424">
        <property type="term" value="P:glutamyl-tRNA aminoacylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.240.10">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.620">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00126">
        <property type="entry name" value="Gln_tRNA_synth"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001412">
        <property type="entry name" value="aa-tRNA-synth_I_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004514">
        <property type="entry name" value="Gln-tRNA-synth"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR022861">
        <property type="entry name" value="Gln_tRNA_ligase_bac"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000924">
        <property type="entry name" value="Glu/Gln-tRNA-synth"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020058">
        <property type="entry name" value="Glu/Gln-tRNA-synth_Ib_cat-dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020059">
        <property type="entry name" value="Glu/Gln-tRNA-synth_Ib_codon-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020056">
        <property type="entry name" value="Rbsml_L25/Gln-tRNA_synth_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011035">
        <property type="entry name" value="Ribosomal_L25/Gln-tRNA_synth"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014729">
        <property type="entry name" value="Rossmann-like_a/b/a_fold"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00749">
        <property type="entry name" value="tRNA-synt_1c"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03950">
        <property type="entry name" value="tRNA-synt_1c_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00987">
        <property type="entry name" value="TRNASYNTHGLU"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50715">
        <property type="entry name" value="SSF50715"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00440">
        <property type="entry name" value="glnS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00178">
        <property type="entry name" value="AA_TRNA_LIGASE_I"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="8 9 10" id="KW-0030">Aminoacyl-tRNA synthetase</keyword>
    <keyword evidence="6 9 10" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="3 9" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="4 9 10" id="KW-0436">Ligase</keyword>
    <keyword evidence="5 9 10" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="7 9 10" id="KW-0648">Protein biosynthesis</keyword>
    <keyword evidence="14" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="tRNA-synt_1c" evidence="11">
        <location>
            <begin position="83"/>
            <end position="402"/>
        </location>
    </feature>
    <feature type="domain" description="tRNA-synt_1c_C" evidence="12">
        <location>
            <begin position="406"/>
            <end position="605"/>
        </location>
    </feature>
    <feature type="short sequence motif" description="'KMSKS' region" evidence="9">
        <location>
            <begin position="334"/>
            <end position="338"/>
        </location>
    </feature>
    <feature type="binding site" evidence="9">
        <location>
            <begin position="91"/>
            <end position="93"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="9">
        <location>
            <position position="123"/>
        </location>
        <ligand>
            <name>L-glutamine</name>
            <dbReference type="ChEBI" id="CHEBI:58359"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="9">
        <location>
            <position position="273"/>
        </location>
        <ligand>
            <name>L-glutamine</name>
            <dbReference type="ChEBI" id="CHEBI:58359"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="9">
        <location>
            <position position="292"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="9">
        <location>
            <begin position="327"/>
            <end position="328"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00000948"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00005594"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022490"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022598"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022917"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00023146"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00126"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="RuleBase" id="RU363037"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="11">
        <source>
            <dbReference type="Pfam" id="PF00749"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="12">
        <source>
            <dbReference type="Pfam" id="PF03950"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="13">
        <source>
            <dbReference type="EMBL" id="ABX35127.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="14">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="628" mass="70267" checksum="61C287051FBF221A" modified="2008-01-15" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="79" xmlns="http://uniprot.org/uniprot">
    <accession>A9BZ39</accession>
    <name>A9BZ39_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Transcriptional regulator, LysR family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Daci_2501</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="4" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the LysR transcriptional regulatory family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX35139.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012204420.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_2501"/>
    <dbReference type="PRIDE" id="A9BZ39"/>
    <dbReference type="EnsemblBacteria" id="ABX35139">
        <property type="protein sequence ID" value="ABX35139"/>
        <property type="gene ID" value="Daci_2501"/>
    </dbReference>
    <dbReference type="GeneID" id="60686867"/>
    <dbReference type="KEGG" id="dac:Daci_2501"/>
    <dbReference type="eggNOG" id="COG0583">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_039613_6_0_4"/>
    <dbReference type="OMA" id="WILGAPH"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003700">
        <property type="term" value="F:DNA-binding transcription factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005119">
        <property type="entry name" value="LysR_subst-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000847">
        <property type="entry name" value="Tscrpt_reg_HTH_LysR"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036390">
        <property type="entry name" value="WH_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00126">
        <property type="entry name" value="HTH_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03466">
        <property type="entry name" value="LysR_substrate"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00039">
        <property type="entry name" value="HTHLYSR"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46785">
        <property type="entry name" value="SSF46785"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50931">
        <property type="entry name" value="HTH_LYSR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HTH lysR-type" evidence="2">
        <location>
            <begin position="21"/>
            <end position="78"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00009437"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS50931"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ABX35139.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="322" mass="35699" checksum="B6C5E467F77851D8" modified="2008-01-15" version="1">MPQNRTASTAAQLAHRMATRLKMKHLLLLRSISELGTLTRVAERMATSQPAVTQALAELESLFGAPLFLRSARGMEPTELGALVLARARGMLADLDHWAHDIEAVGQQRAAHLQVGVIPFLPARMLADAIGRTRPQGRRITVTLHEDTSDRLLQKLRAHELDCVIGRASAVLDMSGIRHSVLYEQEPRLIAHRSLATRLGRRPLQWAELTGLDWVLGQRRTPMREQITDFFLRAGVEPPPPFVETLSAKVIGELVAANERAVSIVPADIAEELVRIAGVGIVRHRFGWTLPPITLFERKAGGQYEEQRLFAQALKEVCSDQG</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="34" xmlns="http://uniprot.org/uniprot">
    <accession>A9BZ81</accession>
    <name>A9BZ81_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Daci_2543</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="2" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX35181.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="PRIDE" id="A9BZ81"/>
    <dbReference type="EnsemblBacteria" id="ABX35181">
        <property type="protein sequence ID" value="ABX35181"/>
        <property type="gene ID" value="Daci_2543"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_2543"/>
    <dbReference type="eggNOG" id="ENOG5033PZ4">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_064927_0_0_4"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ABX35181.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="282" mass="32368" checksum="0DAB38E42BEA1585" modified="2008-01-15" version="1">MALIGYAIFSLTFDTKHWRDYFAERLKEVILEQDYIETLDYESLKDLQTRTLKAQFRNQAIDKEGSFLKYFESNLHRFISEPFREDVSAEVLMKPCDDGTKLEVLDRVRYVCRSSGGRLQEKVVWRPDDGEFEDVKSLSILIQFPPGHQFAGEKRELFKEDGDKLKSCLDKGIEVSLAEYKEVDLLVVFTEAEYIVKLGKLQYWTMAHPTKNFDITITYPVACEIQFKTLVLEDVLSQVSEIPGYLKFGYGVWALPASGIAWVVSPCLKKPGEAQPSFAGEN</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="83" xmlns="http://uniprot.org/uniprot">
    <accession>A9BZJ1</accession>
    <name>A9BZJ1_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="11">TonB-dependent siderophore receptor</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="11" type="ordered locus">Daci_2953</name>
    </gene>
    <organism evidence="11 12">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="11 12" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="12">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="12" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="12">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="8">Cell outer membrane</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="1 8">Belongs to the TonB-dependent receptor family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX35591.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012204801.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_2953"/>
    <dbReference type="PRIDE" id="A9BZJ1"/>
    <dbReference type="EnsemblBacteria" id="ABX35591">
        <property type="protein sequence ID" value="ABX35591"/>
        <property type="gene ID" value="Daci_2953"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_2953"/>
    <dbReference type="eggNOG" id="COG4774">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_008287_9_4_4"/>
    <dbReference type="OMA" id="FELGYQE"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009279">
        <property type="term" value="C:cell outer membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015344">
        <property type="term" value="F:siderophore uptake transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0038023">
        <property type="term" value="F:signaling receptor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.170.130.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.170.20">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012910">
        <property type="entry name" value="Plug_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037066">
        <property type="entry name" value="Plug_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011662">
        <property type="entry name" value="Secretin/TonB_short_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR039423">
        <property type="entry name" value="TonB-dep_rcpt"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000531">
        <property type="entry name" value="TonB-dep_rcpt_b-brl"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036942">
        <property type="entry name" value="TonB_rcpt_b-brl_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010105">
        <property type="entry name" value="TonB_sidphr_rcpt"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR32552">
        <property type="entry name" value="PTHR32552"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07715">
        <property type="entry name" value="Plug"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07660">
        <property type="entry name" value="STN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00593">
        <property type="entry name" value="TonB_dep_Rec"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00965">
        <property type="entry name" value="STN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01783">
        <property type="entry name" value="TonB-siderophor"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="7" id="KW-0998">Cell outer membrane</keyword>
    <keyword evidence="5 8" id="KW-0472">Membrane</keyword>
    <keyword evidence="6 11" id="KW-0675">Receptor</keyword>
    <keyword evidence="12" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 9" id="KW-0732">Signal</keyword>
    <keyword evidence="4 8" id="KW-0798">TonB box</keyword>
    <keyword evidence="2" id="KW-0813">Transport</keyword>
    <feature type="signal peptide" evidence="9">
        <location>
            <begin position="1"/>
            <end position="30"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5002736013" evidence="9">
        <location>
            <begin position="31"/>
            <end position="792"/>
        </location>
    </feature>
    <feature type="domain" description="STN" evidence="10">
        <location>
            <begin position="55"/>
            <end position="106"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00009810"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022448"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022729"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023077"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023170"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023237"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="RuleBase" id="RU003357"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="10">
        <source>
            <dbReference type="SMART" id="SM00965"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="EMBL" id="ABX35591.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="792" mass="85431" checksum="20BD23EB052951F2" modified="2008-01-15" version="1"> </sequence>
</entry>
<entry dataset="Swiss-Prot" created="2009-04-14" modified="2022-08-03" version="79" xmlns="http://uniprot.org/uniprot">
    <accession>A9BZY8</accession>
    <name>DAPD_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase</fullName>
            <ecNumber evidence="1">2.3.1.117</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="1">Tetrahydrodipicolinate N-succinyltransferase</fullName>
            <shortName evidence="1">THP succinyltransferase</shortName>
            <shortName evidence="1">Tetrahydropicolinate succinylase</shortName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="1" type="primary">dapD</name>
        <name type="ordered locus">Daci_3616</name>
    </gene>
    <organism>
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference key="1">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain>DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>(S)-2,3,4,5-tetrahydrodipicolinate + H2O + succinyl-CoA = (S)-2-succinylamino-6-oxoheptanedioate + CoA</text>
            <dbReference type="Rhea" id="RHEA:17325"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:15685"/>
            <dbReference type="ChEBI" id="CHEBI:16845"/>
            <dbReference type="ChEBI" id="CHEBI:57287"/>
            <dbReference type="ChEBI" id="CHEBI:57292"/>
            <dbReference type="EC" id="2.3.1.117"/>
        </reaction>
    </comment>
    <comment type="pathway">
        <text evidence="1">Amino-acid biosynthesis; L-lysine biosynthesis via DAP pathway; LL-2,6-diaminopimelate from (S)-tetrahydrodipicolinate (succinylase route): step 1/3.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="1">Belongs to the transferase hexapeptide repeat family.</text>
    </comment>
    <dbReference type="EC" id="2.3.1.117" evidence="1"/>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX36250.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012205450.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A9BZY8"/>
    <dbReference type="SMR" id="A9BZY8"/>
    <dbReference type="STRING" id="398578.Daci_3616"/>
    <dbReference type="PRIDE" id="A9BZY8"/>
    <dbReference type="EnsemblBacteria" id="ABX36250">
        <property type="protein sequence ID" value="ABX36250"/>
        <property type="gene ID" value="Daci_3616"/>
    </dbReference>
    <dbReference type="GeneID" id="60687824"/>
    <dbReference type="KEGG" id="dac:Daci_3616"/>
    <dbReference type="eggNOG" id="COG2171">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_050859_0_1_4"/>
    <dbReference type="OMA" id="YFPIQKM"/>
    <dbReference type="UniPathway" id="UPA00034">
        <property type="reaction ID" value="UER00019"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008666">
        <property type="term" value="F:2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0019877">
        <property type="term" value="P:diaminopimelate biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009089">
        <property type="term" value="P:lysine biosynthetic process via diaminopimelate"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.166.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00811">
        <property type="entry name" value="DapD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005664">
        <property type="entry name" value="DapD_Trfase_Hexpep_rpt_fam"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001451">
        <property type="entry name" value="Hexapep"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018357">
        <property type="entry name" value="Hexapep_transf_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023180">
        <property type="entry name" value="THP_succinylTrfase_dom1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037133">
        <property type="entry name" value="THP_succinylTrfase_N_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011004">
        <property type="entry name" value="Trimer_LpxA-like_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF14602">
        <property type="entry name" value="Hexapep_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF14805">
        <property type="entry name" value="THDPS_N_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51161">
        <property type="entry name" value="SSF51161"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00965">
        <property type="entry name" value="dapD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00101">
        <property type="entry name" value="HEXAPEP_TRANSFERASES"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword id="KW-0012">Acyltransferase</keyword>
    <keyword id="KW-0028">Amino-acid biosynthesis</keyword>
    <keyword id="KW-0963">Cytoplasm</keyword>
    <keyword id="KW-0220">Diaminopimelate biosynthesis</keyword>
    <keyword id="KW-0457">Lysine biosynthesis</keyword>
    <keyword id="KW-1185">Reference proteome</keyword>
    <keyword id="KW-0677">Repeat</keyword>
    <keyword id="KW-0808">Transferase</keyword>
    <feature type="chain" id="PRO_1000134040" description="2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase">
        <location>
            <begin position="1"/>
            <end position="274"/>
        </location>
    </feature>
    <evidence type="ECO:0000255" key="1">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00811"/>
        </source>
    </evidence>
    <sequence length="274" mass="29253" checksum="6E6304781B16B0B5" modified="2008-01-15" version="1">MTQQLQSIIDTAWDNRASLSPAAAPKEVTEAVDHVIEALNNGQLRVATREGVGQWTVHQWIKKAVLLSFRLKDNVLMQSGDLNFFDKVPTKFAGMTEAEIAATGVRVVPPAVARRGSFVAKGAILMPSYVNIGAYVDEGTMVDTWATVGSCAQVGKNVHLSGGVGLGGVLEPLQANPTIIEDNCFIGARSEIVEGVIVEENSVISMGVYIGQSTPIYDRATGETSYGRVPAGSVVVSGNLPKDNGRYSMYAAIIVKKVDAKTRSTTSLNDLLRD</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="79" xmlns="http://uniprot.org/uniprot">
    <accession>A9C015</accession>
    <name>A9C015_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Isocitrate dehydrogenase [NADP]</fullName>
            <ecNumber evidence="1">1.1.1.42</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="1">Oxalosuccinate decarboxylase</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="6" type="ordered locus">Daci_3645</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="7" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>D-threo-isocitrate + NADP(+) = 2-oxoglutarate + CO2 + NADPH</text>
            <dbReference type="Rhea" id="RHEA:19629"/>
            <dbReference type="ChEBI" id="CHEBI:15562"/>
            <dbReference type="ChEBI" id="CHEBI:16526"/>
            <dbReference type="ChEBI" id="CHEBI:16810"/>
            <dbReference type="ChEBI" id="CHEBI:57783"/>
            <dbReference type="ChEBI" id="CHEBI:58349"/>
            <dbReference type="EC" id="1.1.1.42"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="4">
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </cofactor>
        <cofactor evidence="4">
            <name>Mn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29035"/>
        </cofactor>
        <text evidence="4">Binds 1 Mg(2+) or Mn(2+) ion per subunit.</text>
    </comment>
    <comment type="similarity">
        <text evidence="1">Belongs to the monomeric-type IDH family.</text>
    </comment>
    <dbReference type="EC" id="1.1.1.42" evidence="1"/>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX36277.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012205473.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_3645"/>
    <dbReference type="PRIDE" id="A9C015"/>
    <dbReference type="EnsemblBacteria" id="ABX36277">
        <property type="protein sequence ID" value="ABX36277"/>
        <property type="gene ID" value="Daci_3645"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_3645"/>
    <dbReference type="eggNOG" id="COG2838">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_025308_1_0_4"/>
    <dbReference type="OMA" id="FRMCQTK"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004450">
        <property type="term" value="F:isocitrate dehydrogenase (NADP+) activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006097">
        <property type="term" value="P:glyoxylate cycle"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006099">
        <property type="term" value="P:tricarboxylic acid cycle"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004436">
        <property type="entry name" value="Isocitrate_DH_NADP_mono"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR36999">
        <property type="entry name" value="PTHR36999"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03971">
        <property type="entry name" value="IDH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF009407">
        <property type="entry name" value="IDH_monmr"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00178">
        <property type="entry name" value="monomer_idh"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="1" id="KW-0329">Glyoxylate bypass</keyword>
    <keyword evidence="4" id="KW-0460">Magnesium</keyword>
    <keyword evidence="4" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="1 5" id="KW-0521">NADP</keyword>
    <keyword evidence="1 6" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0816">Tricarboxylic acid cycle</keyword>
    <feature type="region of interest" description="Substrate binding" evidence="3">
        <location>
            <begin position="134"/>
            <end position="141"/>
        </location>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <begin position="84"/>
            <end position="89"/>
        </location>
        <ligand>
            <name>NADP(+)</name>
            <dbReference type="ChEBI" id="CHEBI:58349"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <position position="137"/>
        </location>
        <ligand>
            <name>NADP(+)</name>
            <dbReference type="ChEBI" id="CHEBI:58349"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="3">
        <location>
            <position position="147"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="3">
        <location>
            <position position="550"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <begin position="587"/>
            <end position="588"/>
        </location>
        <ligand>
            <name>NADP(+)</name>
            <dbReference type="ChEBI" id="CHEBI:58349"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <position position="592"/>
        </location>
        <ligand>
            <name>NADP(+)</name>
            <dbReference type="ChEBI" id="CHEBI:58349"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <begin position="603"/>
            <end position="605"/>
        </location>
        <ligand>
            <name>NADP(+)</name>
            <dbReference type="ChEBI" id="CHEBI:58349"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <position position="652"/>
        </location>
        <ligand>
            <name>NADP(+)</name>
            <dbReference type="ChEBI" id="CHEBI:58349"/>
        </ligand>
    </feature>
    <feature type="site" description="Critical for catalysis" evidence="2">
        <location>
            <position position="257"/>
        </location>
    </feature>
    <feature type="site" description="Critical for catalysis" evidence="2">
        <location>
            <position position="422"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="PIRNR" id="PIRNR009407"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="PIRSR" id="PIRSR009407-1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="PIRSR" id="PIRSR009407-2"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="PIRSR" id="PIRSR009407-3"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="PIRSR" id="PIRSR009407-4"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="ABX36277.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="744" mass="82524" checksum="FC23CDA6EEA7D211" modified="2008-01-15" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-05-25" version="56" xmlns="http://uniprot.org/uniprot">
    <accession>A9C016</accession>
    <name>A9C016_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="3">RNP-1 like RNA-binding protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Daci_3646</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="4" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX36278.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012205474.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_3646"/>
    <dbReference type="EnsemblBacteria" id="ABX36278">
        <property type="protein sequence ID" value="ABX36278"/>
        <property type="gene ID" value="Daci_3646"/>
    </dbReference>
    <dbReference type="GeneID" id="60687886"/>
    <dbReference type="KEGG" id="dac:Daci_3646"/>
    <dbReference type="eggNOG" id="COG0724">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_012062_28_8_4"/>
    <dbReference type="OMA" id="LPWNTTA"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003723">
        <property type="term" value="F:RNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.70.330">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012677">
        <property type="entry name" value="Nucleotide-bd_a/b_plait_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035979">
        <property type="entry name" value="RBD_domain_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000504">
        <property type="entry name" value="RRM_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00076">
        <property type="entry name" value="RRM_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00360">
        <property type="entry name" value="RRM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54928">
        <property type="entry name" value="SSF54928"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50102">
        <property type="entry name" value="RRM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="RRM" evidence="2">
        <location>
            <begin position="3"/>
            <end position="81"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="80"/>
            <end position="115"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS50102"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ABX36278.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="115" mass="12033" checksum="853A2E5C52C3DF4F" modified="2008-01-15" version="1">MTTKIYVGNLPYSVTDSSLESNFAEFGNVASAKVMMDRETGRSKGFGFVEMASAEVAQAAITGLHGMSVDGRSIVVNLARPREEGRSSGGYSPQGYAGKRSDVGYGNGGHGGGRY</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="66" xmlns="http://uniprot.org/uniprot">
    <accession>A9C043</accession>
    <name>A9C043_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">L-carnitine dehydratase/bile acid-inducible protein F</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_3673</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX36305.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_3673"/>
    <dbReference type="PRIDE" id="A9C043"/>
    <dbReference type="EnsemblBacteria" id="ABX36305">
        <property type="protein sequence ID" value="ABX36305"/>
        <property type="gene ID" value="Daci_3673"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_3673"/>
    <dbReference type="eggNOG" id="COG1804">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_033975_2_1_4"/>
    <dbReference type="OMA" id="MASFMLV"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003824">
        <property type="term" value="F:catalytic activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.1540.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.10540">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003673">
        <property type="entry name" value="CoA-Trfase_fam_III"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR044855">
        <property type="entry name" value="CoA-Trfase_III_dom3_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023606">
        <property type="entry name" value="CoA-Trfase_III_dom_1_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02515">
        <property type="entry name" value="CoA_transf_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF89796">
        <property type="entry name" value="SSF89796"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="343"/>
            <end position="376"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="433"/>
            <end position="473"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="433"/>
            <end position="466"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX36305.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="473" mass="50572" checksum="4BC33CB2C0013A61" modified="2008-01-15" version="1">MEQAQQGQQGPLAGVKVLDMTSVVMGPFATQILAGLGAEVIKVESPEGDNMRHVGPMRNPAMGHIFLQANQGKRSVVLDLKQGAAREALLRLAEGCDVLVSNVRPQAMARLGLAYEDVAARNPRIIHVSCCGFDQRGPYAARPAYDDLIQGATGVPWLAQQYGGGEPAYAPMTLGDRVTGLHAVYAVTAALYAREKTGKGQAVVVPMFEAMTQFILGDHMAGLSFEPQLGGPGYARLLTAHRRPYRTSDGHLCVLIYNDKHWHSFFNAIGQPERMAEPIFATHSQRALHIDAVYAEVSRLMAGRTTAEWRTLLDAADVPNMPMASPEDLIADPQHQATGFVHEIDHPSEGRLRTTASPTRWSATPPAERAAPAPRLGEHTLQVLRDAGLTEAELAALQASRACSQAAALQDAPPQTQAQAQAQAQAQAQAQAQAQAQAQAQAQAQAQAQAQAQAQAQAQAQAQTEGNRPCPAI</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="37" xmlns="http://uniprot.org/uniprot">
    <accession>A9C055</accession>
    <name>A9C055_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Daci_3685</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="2" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX36317.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="PRIDE" id="A9C055"/>
    <dbReference type="EnsemblBacteria" id="ABX36317">
        <property type="protein sequence ID" value="ABX36317"/>
        <property type="gene ID" value="Daci_3685"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_3685"/>
    <dbReference type="eggNOG" id="ENOG5033JVI">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_2218794_0_0_4"/>
    <dbReference type="OMA" id="EFCEMSK"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ABX36317.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="106" mass="11822" checksum="83CF934B8D4E70CC" modified="2008-01-15" version="1">MLPPPEKTQEPKSIGKITFAVLRRVAWKTFCKTDSPVYKMWSKKIPEVFNQGYFSAAILSTFGDFRIGLPLVASGIAALVMKYSAEEFCTLTKPKGLMISGEDKEI</sequence>
</entry>
<entry dataset="Swiss-Prot" created="2009-07-28" modified="2022-08-03" version="63" xmlns="http://uniprot.org/uniprot">
    <accession>A9C0A8</accession>
    <name>TRHO_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">tRNA uridine(34) hydroxylase</fullName>
            <ecNumber evidence="1">1.14.-.-</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="1">tRNA hydroxylation protein O</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="1" type="primary">trhO</name>
        <name type="ordered locus">Daci_4043</name>
    </gene>
    <organism>
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference key="1">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain>DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="1">Catalyzes oxygen-dependent 5-hydroxyuridine (ho5U) modification at position 34 in tRNAs.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>AH2 + O2 + uridine(34) in tRNA = 5-hydroxyuridine(34) in tRNA + A + H2O</text>
            <dbReference type="Rhea" id="RHEA:64224"/>
            <dbReference type="Rhea" id="RHEA-COMP:11727"/>
            <dbReference type="Rhea" id="RHEA-COMP:13381"/>
            <dbReference type="ChEBI" id="CHEBI:13193"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:15379"/>
            <dbReference type="ChEBI" id="CHEBI:17499"/>
            <dbReference type="ChEBI" id="CHEBI:65315"/>
            <dbReference type="ChEBI" id="CHEBI:136877"/>
        </reaction>
    </comment>
    <comment type="similarity">
        <text evidence="1">Belongs to the TrhO family.</text>
    </comment>
    <dbReference type="EC" id="1.14.-.-" evidence="1"/>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX36674.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012205868.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A9C0A8"/>
    <dbReference type="SMR" id="A9C0A8"/>
    <dbReference type="STRING" id="398578.Daci_4043"/>
    <dbReference type="PRIDE" id="A9C0A8"/>
    <dbReference type="EnsemblBacteria" id="ABX36674">
        <property type="protein sequence ID" value="ABX36674"/>
        <property type="gene ID" value="Daci_4043"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_4043"/>
    <dbReference type="eggNOG" id="COG1054">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_038878_0_1_4"/>
    <dbReference type="OMA" id="CDTHTNC"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016705">
        <property type="term" value="F:oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006400">
        <property type="term" value="P:tRNA modification"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.250.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00469">
        <property type="entry name" value="TrhO"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001763">
        <property type="entry name" value="Rhodanese-like_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036873">
        <property type="entry name" value="Rhodanese-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020936">
        <property type="entry name" value="TrhO"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR040503">
        <property type="entry name" value="TRHO_N"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43268">
        <property type="entry name" value="PTHR43268"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF17773">
        <property type="entry name" value="UPF0176_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00450">
        <property type="entry name" value="RHOD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52821">
        <property type="entry name" value="SSF52821"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50206">
        <property type="entry name" value="RHODANESE_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword id="KW-0560">Oxidoreductase</keyword>
    <keyword id="KW-1185">Reference proteome</keyword>
    <keyword id="KW-0819">tRNA processing</keyword>
    <feature type="chain" id="PRO_1000135468" description="tRNA uridine(34) hydroxylase">
        <location>
            <begin position="1"/>
            <end position="263"/>
        </location>
    </feature>
    <feature type="domain" description="Rhodanese" evidence="1">
        <location>
            <begin position="129"/>
            <end position="223"/>
        </location>
    </feature>
    <feature type="active site" description="Cysteine persulfide intermediate" evidence="1">
        <location>
            <position position="183"/>
        </location>
    </feature>
    <evidence type="ECO:0000255" key="1">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00469"/>
        </source>
    </evidence>
    <sequence length="263" mass="29146" checksum="BA7AEB22D4073E7F" modified="2008-01-15" version="1">MSDILNISCYKFTPLPDAAALRDTLAERAQALALKGTILLAEEGINFFLAGPAQAVHSFVDQLRADDRFADLAPKESWSDTVPFRKMLVKVKREIIRMDHPTIRPAEGRAPSVSPATLRRWLEQGHDDEGREVVTLDTRNDFEVDAGAFKDTIDWRITKFTEFPPALRAHKAELADKTVVSYCTGGIRCEKAAILMRDEGLEHVYQLEGGILKYFEETDGAFYDGGCFVFDERRAVGADLAITPLAPAEPLEPIQPTSPPGKA</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="42" xmlns="http://uniprot.org/uniprot">
    <accession>A9C0K9</accession>
    <name>A9C0K9_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_4452</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX37082.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_4452"/>
    <dbReference type="PRIDE" id="A9C0K9"/>
    <dbReference type="EnsemblBacteria" id="ABX37082">
        <property type="protein sequence ID" value="ABX37082"/>
        <property type="gene ID" value="Daci_4452"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_4452"/>
    <dbReference type="eggNOG" id="ENOG5031JJE">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_115762_1_0_4"/>
    <dbReference type="OMA" id="CGQPVYF"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="139"/>
            <end position="205"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="149"/>
            <end position="205"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX37082.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="205" mass="23059" checksum="8124C8F549E7A0D9" modified="2008-01-15" version="1">MNGFLHLFRRSGPRGPARLVETGPFLFHPIQKNMALLTLRTTLRAAAAFALACSALAAQAQTYISGSVSGQLAPGVYGTVDIGNAPPPALLYQRPVIIAPAPMAPPPVYMWVPPGHAKHWGKHCARYGACGRPVYFLRNPPPHWHAGPPRPDPRWREERRHREWEHRRDDRRWDRDDRHDRHGGRGDDHRGPGHGHDRGRGHGRD</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="67" xmlns="http://uniprot.org/uniprot">
    <accession>A9C0M2</accession>
    <name>A9C0M2_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="7">Histone family protein nucleoid-structuring protein H-NS</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ordered locus">Daci_4465</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="8" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Cytoplasm</location>
            <location evidence="1">Nucleoid</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the histone-like protein H-NS family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX37095.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012206267.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_4465"/>
    <dbReference type="PRIDE" id="A9C0M2"/>
    <dbReference type="EnsemblBacteria" id="ABX37095">
        <property type="protein sequence ID" value="ABX37095"/>
        <property type="gene ID" value="Daci_4465"/>
    </dbReference>
    <dbReference type="GeneID" id="60688990"/>
    <dbReference type="KEGG" id="dac:Daci_4465"/>
    <dbReference type="eggNOG" id="COG2916">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_117503_5_1_4"/>
    <dbReference type="OMA" id="AYEVFGY"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009295">
        <property type="term" value="C:nucleoid"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030527">
        <property type="term" value="F:structural constituent of chromatin"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006355">
        <property type="term" value="P:regulation of transcription, DNA-templated"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027444">
        <property type="entry name" value="H-NS_C_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001801">
        <property type="entry name" value="Histone_HNS"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00816">
        <property type="entry name" value="Histone_HNS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00528">
        <property type="entry name" value="HNS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="4" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HNS" evidence="6">
        <location>
            <begin position="52"/>
            <end position="91"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="5">
        <location>
            <begin position="51"/>
            <end position="77"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004453"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00010610"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022490"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="SMART" id="SM00528"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="ABX37095.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="92" mass="10494" checksum="AFF3F58728A44AF4" modified="2008-01-15" version="1">MTTYQELIAQKKLLDQQIDDARKLESKAALASVQELVREFGFTAQQVFPWKPDGKKSAPAKYQDPESGKTWTGRGKPPNWILGKDRTLFEIK</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2021-09-29" version="66" xmlns="http://uniprot.org/uniprot">
    <accession>A9C0Z4</accession>
    <name>A9C0Z4_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="8">Major facilitator superfamily MFS_1</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="8" type="ordered locus">Daci_5829</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="9" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX38457.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012207626.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_5829"/>
    <dbReference type="EnsemblBacteria" id="ABX38457">
        <property type="protein sequence ID" value="ABX38457"/>
        <property type="gene ID" value="Daci_5829"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_5829"/>
    <dbReference type="eggNOG" id="COG2223">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_040537_2_0_4"/>
    <dbReference type="OMA" id="LMFAKFV"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0022857">
        <property type="term" value="F:transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.1250.20">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011701">
        <property type="entry name" value="MFS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020846">
        <property type="entry name" value="MFS_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036259">
        <property type="entry name" value="MFS_trans_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07690">
        <property type="entry name" value="MFS_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF103473">
        <property type="entry name" value="SSF103473"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50850">
        <property type="entry name" value="MFS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4 6" id="KW-0472">Membrane</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 6" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="3 6" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="37"/>
            <end position="59"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="79"/>
            <end position="99"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="106"/>
            <end position="124"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="194"/>
            <end position="213"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="243"/>
            <end position="270"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="282"/>
            <end position="302"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="309"/>
            <end position="325"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="331"/>
            <end position="354"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="366"/>
            <end position="389"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="395"/>
            <end position="414"/>
        </location>
    </feature>
    <feature type="domain" description="MFS" evidence="7">
        <location>
            <begin position="41"/>
            <end position="420"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="5">
        <location>
            <begin position="1"/>
            <end position="26"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="PROSITE" id="PS50850"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="ABX38457.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="422" mass="44483" checksum="1340D020549EFC84" modified="2008-01-15" version="1">MTSNTTTLGAPGELAGPATHAHPAPAHPAPGHAAQGFLLRIVGAAAFAHLLNDLIQAVLPAVYPMLKTEFSLSFAQIGWISLVYQVTASLLQPWIGLYTDKHPKPYLLPLGMVVTLVGVGLLALSTSYPMLLAAASLIGVGSSTFHPEASRVARLASGGRFGTAQSTFQVGGNTGSAIGPLMVAAIVIPFGQHAIAWFMLVALLAIWVLLRITHWRLHHAPAKVVAAGQHALTALNRSQVIRAVTVICVLMFAKFVYIAAFANYFTFYLIERFALPVQQSQLYLFAFLAAVAAGTFAGGPVGDRIGRKAVIWVSFLGVAPFALLLPHADLFWTAVLSIVIGLVMSSAFAALVVYAQEAVPGRVGLVSGLMFGLMFGIGGLGAAGMGNLADTHGIVWVYGLVAYLPLLGLATAFLPETRARRR</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="60" xmlns="http://uniprot.org/uniprot">
    <accession>A9C115</accession>
    <name>A9C115_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="6">Precorrin-8X methylmutase</fullName>
            <ecNumber evidence="6">5.4.1.2</ecNumber>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ordered locus">Daci_5850</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="7" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="pathway">
        <text evidence="1">Cofactor biosynthesis; adenosylcobalamin biosynthesis.</text>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the CobH/CbiC family.</text>
    </comment>
    <dbReference type="EC" id="5.4.1.2" evidence="6"/>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX38478.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012207647.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_5850"/>
    <dbReference type="PRIDE" id="A9C115"/>
    <dbReference type="EnsemblBacteria" id="ABX38478">
        <property type="protein sequence ID" value="ABX38478"/>
        <property type="gene ID" value="Daci_5850"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_5850"/>
    <dbReference type="eggNOG" id="COG2082">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_084703_0_0_4"/>
    <dbReference type="OMA" id="GAPIFCD"/>
    <dbReference type="UniPathway" id="UPA00148"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016993">
        <property type="term" value="F:precorrin-8X methylmutase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009236">
        <property type="term" value="P:cobalamin biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniPathway"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.10230">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003722">
        <property type="entry name" value="Cbl_synth_CobH/CbiC"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036588">
        <property type="entry name" value="CobH/CbiC_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02570">
        <property type="entry name" value="CbiC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF63965">
        <property type="entry name" value="SSF63965"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-0169">Cobalamin biosynthesis</keyword>
    <keyword evidence="4 6" id="KW-0413">Isomerase</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="CbiC" evidence="5">
        <location>
            <begin position="11"/>
            <end position="206"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004953"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00009774"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022573"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023235"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="Pfam" id="PF02570"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="ABX38478.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="209" mass="22198" checksum="76F3A041012C3E98" modified="2008-01-15" version="1">MLHRYETDGAEIYRQSFATIRREAALERFTPVEERVVVRMIHAAGLVELAPHVAFSPGMAEAAAQALQKGAPVLCDVRMVSEGITRSRLPAANPIICTLQDERVPALARDMGNTRSAAALELWRPHLAGAVVAIGNAPTALFHLLNMLQDPACPRPAAIIGCPVGFVGAMESKQALMQDLPVPCMAVHGRLGGSAITVAAINALASHVE</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="62" xmlns="http://uniprot.org/uniprot">
    <accession>A9C1C8</accession>
    <name>A9C1C8_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">YbaK/prolyl-tRNA synthetase associated region</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_5963</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX38591.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012207760.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_5963"/>
    <dbReference type="PRIDE" id="A9C1C8"/>
    <dbReference type="EnsemblBacteria" id="ABX38591">
        <property type="protein sequence ID" value="ABX38591"/>
        <property type="gene ID" value="Daci_5963"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_5963"/>
    <dbReference type="eggNOG" id="COG2606">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_094875_0_0_4"/>
    <dbReference type="OMA" id="VMLPATG"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0002161">
        <property type="term" value="F:aminoacyl-tRNA editing activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004812">
        <property type="term" value="F:aminoacyl-tRNA ligase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.960.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036754">
        <property type="entry name" value="YbaK/aa-tRNA-synt-asso_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007214">
        <property type="entry name" value="YbaK/aa-tRNA-synth-assoc-dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04073">
        <property type="entry name" value="tRNA_edit"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55826">
        <property type="entry name" value="SSF55826"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0030">Aminoacyl-tRNA synthetase</keyword>
    <keyword evidence="2" id="KW-0436">Ligase</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="tRNA_edit" evidence="1">
        <location>
            <begin position="35"/>
            <end position="151"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF04073"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX38591.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="167" mass="17327" checksum="3018408D07D4149B" modified="2008-01-15" version="1">MCGSELHHLPEGVQRVAAFLQQAGHGEGPRMLDGAARTAQEAADQLGILVGQVAKSIIFRRRSDGVAVLVVASGDRRVDEKKVAALVGPVGRADADFVKAQTGFSIGGVSPVAHANTPVTLVDRELQRFDTVWAAAGHPHAVFAATPAALQLLAGAPWADVVQEVAA</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="71" xmlns="http://uniprot.org/uniprot">
    <accession>A9C1F0</accession>
    <name>A9C1F0_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="8">Acyl-CoA dehydrogenase domain protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="8" type="ordered locus">Daci_5985</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="9" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>FAD</name>
            <dbReference type="ChEBI" id="CHEBI:57692"/>
        </cofactor>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the acyl-CoA dehydrogenase family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX38613.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012207782.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_5985"/>
    <dbReference type="PRIDE" id="A9C1F0"/>
    <dbReference type="EnsemblBacteria" id="ABX38613">
        <property type="protein sequence ID" value="ABX38613"/>
        <property type="gene ID" value="Daci_5985"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_5985"/>
    <dbReference type="eggNOG" id="COG1960">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_018204_0_2_4"/>
    <dbReference type="OMA" id="RDVKLNQ"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003995">
        <property type="term" value="F:acyl-CoA dehydrogenase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0050660">
        <property type="term" value="F:flavin adenine dinucleotide binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.540.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.110.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006089">
        <property type="entry name" value="Acyl-CoA_DH_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006091">
        <property type="entry name" value="Acyl-CoA_Oxase/DH_mid-dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR046373">
        <property type="entry name" value="Acyl-CoA_Oxase/DH_mid-dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036250">
        <property type="entry name" value="AcylCo_DH-like_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009075">
        <property type="entry name" value="AcylCo_DH/oxidase_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013786">
        <property type="entry name" value="AcylCoA_DH/ox_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037069">
        <property type="entry name" value="AcylCoA_DH/ox_N_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009100">
        <property type="entry name" value="AcylCoA_DH/oxidase_NM_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00441">
        <property type="entry name" value="Acyl-CoA_dh_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02770">
        <property type="entry name" value="Acyl-CoA_dh_M"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02771">
        <property type="entry name" value="Acyl-CoA_dh_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47203">
        <property type="entry name" value="SSF47203"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56645">
        <property type="entry name" value="SSF56645"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00073">
        <property type="entry name" value="ACYL_COA_DH_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-0274">FAD</keyword>
    <keyword evidence="3" id="KW-0285">Flavoprotein</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Acyl-CoA_dh_N" evidence="7">
        <location>
            <begin position="5"/>
            <end position="116"/>
        </location>
    </feature>
    <feature type="domain" description="Acyl-CoA_dh_M" evidence="6">
        <location>
            <begin position="120"/>
            <end position="215"/>
        </location>
    </feature>
    <feature type="domain" description="Acyl-CoA_dh_1" evidence="5">
        <location>
            <begin position="227"/>
            <end position="375"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001974"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00009347"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022630"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022827"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="Pfam" id="PF00441"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="Pfam" id="PF02770"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="Pfam" id="PF02771"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="ABX38613.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="376" mass="40294" checksum="F233DCC48059D9CD" modified="2008-01-15" version="1">MLLNADQEMIRDAVRDFVRTEITPHAARWDKEHHFPKNVHQGLAALGAYGICVPEEYGGAGLDYLSLALVLEEIAAGDGGTSTVISVTNCPVNAILMRYGSEAQKQQWLAPLARGEMLGAFCLTEPHVGSDASALRTTATRDGSDYVINGVKQFITSGKNGDVAIVIAVTDKAAGKRGMSAFIVPTSAPGYQVLRLEDKLGQHSSDTAQIQFEGCRIPAANLIGAEGEGYRIALSALEGGRIGIAAQSVGMARAAFDCALQYSKERESFGQPIFNHQAVGFRLADCATQIEAARQLIWHAASLRDAGLPCLKEAAMAKLFASEMAERVCSAAIQTLGGYGVVSDFPVERIYRDVRVCQIYEGTSDVQKILIQRALA</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="59" xmlns="http://uniprot.org/uniprot">
    <accession>A9C1X1</accession>
    <name>A9C1X1_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="6">Zinc/iron permease</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ordered locus">Daci_2969</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="7" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX35607.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012204817.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_2969"/>
    <dbReference type="PRIDE" id="A9C1X1"/>
    <dbReference type="EnsemblBacteria" id="ABX35607">
        <property type="protein sequence ID" value="ABX35607"/>
        <property type="gene ID" value="Daci_2969"/>
    </dbReference>
    <dbReference type="GeneID" id="60687270"/>
    <dbReference type="KEGG" id="dac:Daci_2969"/>
    <dbReference type="eggNOG" id="COG0428">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_015114_1_2_4"/>
    <dbReference type="OMA" id="MIFVVIE"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046873">
        <property type="term" value="F:metal ion transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003689">
        <property type="entry name" value="ZIP"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02535">
        <property type="entry name" value="Zip"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4 5" id="KW-0472">Membrane</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 5" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="3 5" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="20"/>
            <end position="40"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="46"/>
            <end position="70"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="82"/>
            <end position="103"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="115"/>
            <end position="137"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="165"/>
            <end position="188"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="194"/>
            <end position="218"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="225"/>
            <end position="248"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="254"/>
            <end position="274"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="286"/>
            <end position="305"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="ABX35607.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="306" mass="31807" checksum="721FA0F0D0A69214" modified="2008-01-15" version="1">MDLPQRFRSKTSVRSNIRLWIGLAIMMAGAWALTSQFWAYAQNHPVVFQALAGGSAAALATALGTVPVMLSQRLSERTQDTLFGFGAGVMLAACAFSLILPGLEAVRTQELFGGGSWAAGGVIGSAILMGGAALMLMDRLLPHEHFIKGREGLDPQGARKLQRTWLFVFAITLHNLPEGLAIGVGYAGNDGLRANALATGIAIQDVPEGLVVAVALLAAGYKRSFAVLLGMASGLVEPVGAVLGAAIVSGSAAMLPWGLGFAAGAMLFVISHEIIPESHRKGHEAFATGGLMLGFVLMMVLDTALG</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="71" xmlns="http://uniprot.org/uniprot">
    <accession>A9C222</accession>
    <name>A9C222_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Zinc-type alcohol dehydrogenase-like protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Daci_3020</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="4" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the zinc-containing alcohol dehydrogenase family. Quinone oxidoreductase subfamily.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX35658.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012204864.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_3020"/>
    <dbReference type="PRIDE" id="A9C222"/>
    <dbReference type="EnsemblBacteria" id="ABX35658">
        <property type="protein sequence ID" value="ABX35658"/>
        <property type="gene ID" value="Daci_3020"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_3020"/>
    <dbReference type="eggNOG" id="COG0604">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_026673_3_0_4"/>
    <dbReference type="OMA" id="QGTYSEY"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016491">
        <property type="term" value="F:oxidoreductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008270">
        <property type="term" value="F:zinc ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd08252">
        <property type="entry name" value="AL_MDR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013154">
        <property type="entry name" value="ADH_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014182">
        <property type="entry name" value="ADH_Zn_typ-1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011032">
        <property type="entry name" value="GroES-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036291">
        <property type="entry name" value="NAD(P)-bd_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020843">
        <property type="entry name" value="PKS_ER"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08240">
        <property type="entry name" value="ADH_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00829">
        <property type="entry name" value="PKS_ER"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50129">
        <property type="entry name" value="SSF50129"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51735">
        <property type="entry name" value="SSF51735"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR02817">
        <property type="entry name" value="adh_fam_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="1" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="1" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0862">Zinc</keyword>
    <feature type="domain" description="PKS_ER" evidence="2">
        <location>
            <begin position="13"/>
            <end position="335"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="RuleBase" id="RU364000"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="SMART" id="SM00829"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ABX35658.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="339" mass="36382" checksum="BA8FB4DF3E32765F" modified="2008-01-15" version="1">MKAVGYQKPQAISQPESLIDITLPDPVATGRDLLVEVRAVSVNPVDTKVRASGAPAEGQTHKVLGWDASGIVKAVGPEVTLFKPGDRVWYAGSIARPGTNSELHLVDERIVGHAPKSLDFAQAAALPLTAITAWEMLFDRLGIAPGKHPSHKTLLIIGASGGVGSILTQLATRLTSLTVIGTASRPETQAWVKELGAHHVIDHSQPIADELKRIGFPTVDHIVSLTQTDLHFAQIVEAIAPQGKFGLIDDPASLDITKLKRKSVSVHWELMFTRALFGTDDMIGQHRLLNEVAALVDAGLIRTTLAERFGSINADNLKRAHALIESGKARGKVVLENWG</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="53" xmlns="http://uniprot.org/uniprot">
    <accession>A9C275</accession>
    <name>A9C275_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Putative signal transduction histidine kinase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Daci_3381</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="4" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX36019.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_3381"/>
    <dbReference type="PRIDE" id="A9C275"/>
    <dbReference type="EnsemblBacteria" id="ABX36019">
        <property type="protein sequence ID" value="ABX36019"/>
        <property type="gene ID" value="Daci_3381"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_3381"/>
    <dbReference type="eggNOG" id="COG4585">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_902311_0_0_4"/>
    <dbReference type="OMA" id="CAMGARR"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016301">
        <property type="term" value="F:kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016310">
        <property type="term" value="P:phosphorylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.565.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003594">
        <property type="entry name" value="HATPase_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036890">
        <property type="entry name" value="HATPase_C_sf"/>
    </dbReference>
    <dbReference type="SMART" id="SM00387">
        <property type="entry name" value="HATPase_c"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55874">
        <property type="entry name" value="SSF55874"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-0418">Kinase</keyword>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0808">Transferase</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="41"/>
            <end position="59"/>
        </location>
    </feature>
    <feature type="domain" description="HATPase_c" evidence="2">
        <location>
            <begin position="192"/>
            <end position="305"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="SMART" id="SM00387"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ABX36019.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="305" mass="33217" checksum="ACD6C34BF75B88FD" modified="2008-01-15" version="1">MKDPLRTLAICLALGLLQMLGLCAWLWQAGAQAPPWLSLASLALLVSTALLCAMGARRLHRLLLWRRRRSPRPSREVQAERRRIAADLHDGVGGLLVHAMALLDPRETRQRQAQELLEQALLDLRLMVDAMDAMEDALPVRLARLRHRLQPVLDRRGMRICWSVADPHAAAGLSGAPDLPVLQDLPDLPRGQPSQQLLAIAQEAVSNALQHARATTLWLVLEPVDRADAASPGRDARRALHWELRVEDDGCGLPSDPGPGPAQGAIPPGLQGMGLAGMHRRAHAIGAVLDILPRAGGGTVVRVRW</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2020-10-07" version="28" xmlns="http://uniprot.org/uniprot">
    <accession>A9C2F5</accession>
    <name>A9C2F5_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Daci_3463</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="2" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX36099.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_3463"/>
    <dbReference type="EnsemblBacteria" id="ABX36099">
        <property type="protein sequence ID" value="ABX36099"/>
        <property type="gene ID" value="Daci_3463"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_3463"/>
    <dbReference type="HOGENOM" id="CLU_2286884_0_0_4"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ABX36099.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="101" mass="11486" checksum="7D8BC07D61DAD9AB" modified="2008-01-15" version="1">MPQTEEAKGLVYRHIEDDVERIIPTQAKAQAHEKVEIHPRWRQTPDLREWPSHWPVAEARTPGVVQLAGVVDLSFVAAETVERKVSRDEFNALKSEGVAIH</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="79" xmlns="http://uniprot.org/uniprot">
    <accession>A9C2S6</accession>
    <name>A9C2S6_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="11">TonB-dependent siderophore receptor</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="11" type="ordered locus">Daci_3793</name>
    </gene>
    <organism evidence="11 12">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="11 12" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="12">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="12" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="12">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="7">Cell outer membrane</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="1 7">Belongs to the TonB-dependent receptor family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX36425.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012205619.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_3793"/>
    <dbReference type="PRIDE" id="A9C2S6"/>
    <dbReference type="EnsemblBacteria" id="ABX36425">
        <property type="protein sequence ID" value="ABX36425"/>
        <property type="gene ID" value="Daci_3793"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_3793"/>
    <dbReference type="eggNOG" id="COG4774">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_008287_9_2_4"/>
    <dbReference type="OMA" id="RQTFTFK"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009279">
        <property type="term" value="C:cell outer membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.170.130.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.170.20">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012910">
        <property type="entry name" value="Plug_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037066">
        <property type="entry name" value="Plug_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR039423">
        <property type="entry name" value="TonB-dep_rcpt"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000531">
        <property type="entry name" value="TonB-dep_rcpt_b-brl"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036942">
        <property type="entry name" value="TonB_rcpt_b-brl_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010917">
        <property type="entry name" value="TonB_rcpt_CS"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR32552">
        <property type="entry name" value="PTHR32552"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07715">
        <property type="entry name" value="Plug"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00593">
        <property type="entry name" value="TonB_dep_Rec"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01156">
        <property type="entry name" value="TONB_DEPENDENT_REC_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="6" id="KW-0998">Cell outer membrane</keyword>
    <keyword evidence="4 7" id="KW-0472">Membrane</keyword>
    <keyword evidence="5 11" id="KW-0675">Receptor</keyword>
    <keyword evidence="12" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 8" id="KW-0732">Signal</keyword>
    <keyword evidence="3 7" id="KW-0798">TonB box</keyword>
    <feature type="signal peptide" evidence="8">
        <location>
            <begin position="1"/>
            <end position="40"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5002735324" evidence="8">
        <location>
            <begin position="41"/>
            <end position="720"/>
        </location>
    </feature>
    <feature type="domain" description="Plug" evidence="10">
        <location>
            <begin position="86"/>
            <end position="189"/>
        </location>
    </feature>
    <feature type="domain" description="TonB_dep_Rec" evidence="9">
        <location>
            <begin position="291"/>
            <end position="713"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00009810"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022729"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023077"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023170"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023237"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="RuleBase" id="RU003357"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="9">
        <source>
            <dbReference type="Pfam" id="PF00593"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="10">
        <source>
            <dbReference type="Pfam" id="PF07715"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="EMBL" id="ABX36425.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="720" mass="77752" checksum="7EE929E9ECFA596A" modified="2008-01-15" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-01-19" version="60" xmlns="http://uniprot.org/uniprot">
    <accession>A9C374</accession>
    <name>A9C374_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Daci_4556</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="4" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Periplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the UPF0065 (bug) family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX37185.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012206355.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_4556"/>
    <dbReference type="EnsemblBacteria" id="ABX37185">
        <property type="protein sequence ID" value="ABX37185"/>
        <property type="gene ID" value="Daci_4556"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_4556"/>
    <dbReference type="eggNOG" id="COG3181">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_045683_0_0_4"/>
    <dbReference type="OMA" id="DNWFGLF"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0042597">
        <property type="term" value="C:periplasmic space"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.190.150">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005064">
        <property type="entry name" value="BUG"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR042100">
        <property type="entry name" value="Bug_dom1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006311">
        <property type="entry name" value="TAT_signal"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR42928">
        <property type="entry name" value="PTHR42928"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03401">
        <property type="entry name" value="TctC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF017082">
        <property type="entry name" value="YflP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51318">
        <property type="entry name" value="TAT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004418"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00006987"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ABX37185.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="337" mass="34624" checksum="42C47EE120892724" modified="2008-01-15" version="1">MSAPSRRSLLRNLGNALLAGLIGLISLIGNLPAAAQDAPQRSITLVVPFTAGGGVDAMARLLAERLRVTLKQPVVVDNRPGASGMLGAGAVARAAGDGHTLLLGSAGETAIAPLVHQGRMPYQPSRDLAPLTLVTRVPNVLVASPGLPASNIDELVRLAKASPGKLGYATSGVGNPQHLNGELLQSLAGIRLNHVPYRGAANQLVDVSSGVVELAFVSYAGAAPFIKSGRVKALAVTSAQRASFAPGIAAIAESTGLASYDLDNWFGLFAPASTPPAVQARLHAAVVNALKDPALAQRLRELGGEPAPMSQQEFKDFIAAETARYAAIVTSARIVAE</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="64" xmlns="http://uniprot.org/uniprot">
    <accession>A9C3F8</accession>
    <name>A9C3F8_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Aliphatic sulfonates family ABC transporter, periplsmic ligand-binding protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ordered locus">Daci_4640</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="6" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Periplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the bacterial solute-binding protein SsuA/TauA family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX37269.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012206439.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_4640"/>
    <dbReference type="PRIDE" id="A9C3F8"/>
    <dbReference type="EnsemblBacteria" id="ABX37269">
        <property type="protein sequence ID" value="ABX37269"/>
        <property type="gene ID" value="Daci_4640"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_4640"/>
    <dbReference type="eggNOG" id="COG0715">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_028871_2_0_4"/>
    <dbReference type="OMA" id="NTHFLLV"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016020">
        <property type="term" value="C:membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0042597">
        <property type="term" value="C:periplasmic space"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0042626">
        <property type="term" value="F:ATPase-coupled transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010067">
        <property type="entry name" value="ABC_SsuA_sub-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001638">
        <property type="entry name" value="Solute-binding_3/MltF_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015168">
        <property type="entry name" value="SsuA/THI5"/>
    </dbReference>
    <dbReference type="Pfam" id="PF09084">
        <property type="entry name" value="NMT1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00062">
        <property type="entry name" value="PBPb"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01728">
        <property type="entry name" value="SsuA_fam"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0732">Signal</keyword>
    <feature type="domain" description="PBPb" evidence="4">
        <location>
            <begin position="48"/>
            <end position="263"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004418"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00010742"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022729"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="SMART" id="SM00062"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="ABX37269.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="336" mass="36442" checksum="A51FADE127DBA80A" modified="2008-01-15" version="1">MSVMVSFDSFPRHTANWRRRQLLGAGLAAAVATVGGPALAQDKAGDRVLRVGHQKGWLSILKSRGTLEKRLAPLGVSVRWIEFNAGPVQLEALNVGSIDFGDVGEAPPIFAQAAGAPLVYAGATVPRPGLEAVIVPKDSPIRSVQDLKGKRVAYNKGSNVQYFLVKLLEKHGLKYGDVQSVFLAPADARAAFERGSVDAWLIWDPFLAAAQKTLDARLLADATGVVNNRAYYFTSRDFATRNADVLRIAIEEVDGIDRWASKNQTAAAAELSSILGLDKSITELYLSRARFGTSSVTREILAEQQQIADTFFELKLIPRKLNLLHAAPVDLIASRP</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="57" xmlns="http://uniprot.org/uniprot">
    <accession>A9BLW4</accession>
    <name>A9BLW4_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">SMP-30/Gluconolaconase/LRE domain protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_4272</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX36903.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012206075.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_4272"/>
    <dbReference type="PRIDE" id="A9BLW4"/>
    <dbReference type="EnsemblBacteria" id="ABX36903">
        <property type="protein sequence ID" value="ABX36903"/>
        <property type="gene ID" value="Daci_4272"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_4272"/>
    <dbReference type="eggNOG" id="COG3386">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_036110_0_1_4"/>
    <dbReference type="OMA" id="VWVLNHR"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.120.10.30">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011042">
        <property type="entry name" value="6-blade_b-propeller_TolB-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013658">
        <property type="entry name" value="SGL"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005511">
        <property type="entry name" value="SMP-30"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08450">
        <property type="entry name" value="SGL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR01790">
        <property type="entry name" value="SMP30FAMILY"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="SGL" evidence="1">
        <location>
            <begin position="45"/>
            <end position="283"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF08450"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX36903.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="307" mass="33563" checksum="2BE494F82017EAF9" modified="2008-01-15" version="1">MFLLQAPQVCELESFTTMPDALRHPERSDWADANRSGAVTDSFLEGPVFDAAGHLYVADIPWGRVFRIDPQGAWTLVAEYDGEPNGMKFLDERTLLITDYKNGLMRLEVATGRISPYLQRRNSERFKGVNDLVFDAEGNLYFTDQGQSGLHDPSGRLYRLRPDGRLDLLLANVPSPNGVALSPDGRVLYLAVTRGNCVWRVPLLPDGSVAKVGQFFTSYGPSGPDGLAVDDQGRLLVANPGLGLVWVLNHRAEPVQVLRGVPGSSLTNLAFGGADRRTLYVTDSTHGRILRARLEAPGLALHGLNKG</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="51" xmlns="http://uniprot.org/uniprot">
    <accession>A9BM49</accession>
    <name>A9BM49_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Outer membrane efflux protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_4765</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the outer membrane factor (OMF) (TC 1.B.17) family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX37394.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_4765"/>
    <dbReference type="PRIDE" id="A9BM49"/>
    <dbReference type="EnsemblBacteria" id="ABX37394">
        <property type="protein sequence ID" value="ABX37394"/>
        <property type="gene ID" value="Daci_4765"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_4765"/>
    <dbReference type="eggNOG" id="COG1538">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_012817_14_0_4"/>
    <dbReference type="OMA" id="YGYLDYV"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015562">
        <property type="term" value="F:efflux transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003423">
        <property type="entry name" value="OMP_efflux"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02321">
        <property type="entry name" value="OEP"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00007613"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX37394.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="485" mass="52420" checksum="25DE36439A75FEDF" modified="2008-01-15" version="1">MHAMVNPTVLAGMAPARFPSFSRKALQGAICSLLVGWGAGASAQASQPPMTQAAPAAAAAAEAAASRTPIVPKAGSAAEATAAAAGPSVASAAAQRLPQLSLNEVVRAVLDHNPDLRAVEQSRTTARAGVVSASALPNPKLEWNQGRNSARVPGAAAGTVQGWAVALPIENPAVRGARVEAARAGEQGSVHFVATTRNALVAQVRLRAYEMVLREAEVEAAKEAVRLLEQAHERVRVRVDSGEAARYEIIKADAEIIQARQQEQTARLRAEQAQLSLGRLAAGQLPVRFRLDVSLEDPLRIEDMGEIDPMEHPELRQLKAEVERAQARLDGAKASRWPGVELRYGQTREPDVRLNTVGVSIQIPLLDQHRGPIDEAASELERARLQLEGRQIELRQQTLQAWKELEMARLRTQALSQGSVREAESALRVAEAAYRFGERGILDVLDAQRVLRSIRADLLDARYQLQAARIQLEYLAGRYDDPSAL</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-01-19" version="62" xmlns="http://uniprot.org/uniprot">
    <accession>A9BM66</accession>
    <name>A9BM66_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_4782</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX37411.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012206581.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_4782"/>
    <dbReference type="EnsemblBacteria" id="ABX37411">
        <property type="protein sequence ID" value="ABX37411"/>
        <property type="gene ID" value="Daci_4782"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_4782"/>
    <dbReference type="eggNOG" id="COG3577">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_104576_0_0_4"/>
    <dbReference type="OMA" id="QYMVDTG"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="CDD" id="cd05483">
        <property type="entry name" value="retropepsin_like_bacteria"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.70.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011969">
        <property type="entry name" value="Clan_AA_Asp_peptidase_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR021109">
        <property type="entry name" value="Peptidase_aspartic_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR034122">
        <property type="entry name" value="Retropepsin-like_bacterial"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50630">
        <property type="entry name" value="SSF50630"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR02281">
        <property type="entry name" value="clan_AA_DTGA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="1">
        <location>
            <begin position="1"/>
            <end position="24"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5002732308" evidence="1">
        <location>
            <begin position="25"/>
            <end position="221"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX37411.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="221" mass="23115" checksum="B1B97589E1423908" modified="2008-01-15" version="1">MRHLRAVLLSLAGVAAALPPLAAAQSVALSGVLGSKALLVIDGGTPRALAAGDSLQDVRVLQVSGDTAEVEIKGRRQTLRLGEAPISLGGRGAAAGDPALGRRVVLKADNRGHFIERGQINGKTMVYMVDTGASSVAIGRSDAERMGLPFLKGQPVMMRTANGDAQGWSLRLDSVRVGDVEVFGVDAVVAPLAMPYVLLGNSFLAHVQMTRQGSEMVLERR</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="60" xmlns="http://uniprot.org/uniprot">
    <accession>A9BMB9</accession>
    <name>A9BMB9_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">Methyltransf_33 domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Daci_4835</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="4" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX37464.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_4835"/>
    <dbReference type="PRIDE" id="A9BMB9"/>
    <dbReference type="EnsemblBacteria" id="ABX37464">
        <property type="protein sequence ID" value="ABX37464"/>
        <property type="gene ID" value="Daci_4835"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_4835"/>
    <dbReference type="eggNOG" id="COG4301">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_049766_1_0_4"/>
    <dbReference type="OMA" id="RVEMHLV"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.150">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035094">
        <property type="entry name" value="EgtD"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019257">
        <property type="entry name" value="MeTrfase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029063">
        <property type="entry name" value="SAM-dependent_MTases_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF10017">
        <property type="entry name" value="Methyltransf_33"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53335">
        <property type="entry name" value="SSF53335"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR03438">
        <property type="entry name" value="egtD_ergothio"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Methyltransf_33" evidence="2">
        <location>
            <begin position="113"/>
            <end position="410"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="60"/>
            <end position="96"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="61"/>
            <end position="77"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF10017"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ABX37464.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="412" mass="45094" checksum="4C186443EB113DC7" modified="2008-01-15" version="1">MGRRLGWCLGLPVRVLRGSLAVCRRQSPLAVRPVATAPCCKPGCGIHHAAAGGAQREAPTMLSAHDSTVSSSALASRAQRVPLPLPSAPRAPAEGGRREAAPEWADHALRATRAELQHGLMQPQAQVSPKYLYDARGCDLFEQITRLPEYYPTRTEAAILADSGAAMAEALRGSEVLIELGAGNCEKVRGLCRSLRPRHFVGVDIAGAFLRQSVRRLAEEFPQLQTHAVTADITEPLTLPPHIPQAGRLLFYPGSSIGNFDPVQAQRMLGQMRAMVNDDGGLLIGIDLPKSTQWLEPAYDDAQGVTARFNLNLLSHVNSLLGSDFNPDDWEHVAFFNAEHSRIEMHLRARRPLIVGWPQGLRHFSAGETIHTENSYKYPLPEFLGMLACAGFGPCQVWTDERQWFAVIHAHA</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="93" xmlns="http://uniprot.org/uniprot">
    <accession>A9BMK9</accession>
    <name>A9BMK9_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="5">ATP-dependent zinc metalloprotease FtsH</fullName>
            <ecNumber evidence="5">3.4.24.-</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="5" type="primary">ftsH</name>
        <name evidence="9" type="ordered locus">Daci_4925</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="9 10" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="10" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="5">Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins.</text>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="5">
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </cofactor>
        <text evidence="5">Binds 1 zinc ion per subunit.</text>
    </comment>
    <comment type="subunit">
        <text evidence="5">Homohexamer.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="5">Cell inner membrane</location>
            <topology evidence="5">Multi-pass membrane protein</topology>
            <orientation evidence="5">Cytoplasmic side</orientation>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="6">Belongs to the AAA ATPase family.</text>
    </comment>
    <comment type="similarity">
        <text evidence="1 5">In the C-terminal section; belongs to the peptidase M41 family.</text>
    </comment>
    <comment type="similarity">
        <text evidence="5">In the central section; belongs to the AAA ATPase family.</text>
    </comment>
    <dbReference type="EC" id="3.4.24.-" evidence="5"/>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX37554.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012206724.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_4925"/>
    <dbReference type="MEROPS" id="M41.001"/>
    <dbReference type="PRIDE" id="A9BMK9"/>
    <dbReference type="EnsemblBacteria" id="ABX37554">
        <property type="protein sequence ID" value="ABX37554"/>
        <property type="gene ID" value="Daci_4925"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_4925"/>
    <dbReference type="eggNOG" id="COG0465">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_000688_16_2_4"/>
    <dbReference type="OMA" id="QYGMTER"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016887">
        <property type="term" value="F:ATP hydrolysis activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004176">
        <property type="term" value="F:ATP-dependent peptidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004222">
        <property type="term" value="F:metalloendopeptidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008270">
        <property type="term" value="F:zinc ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030163">
        <property type="term" value="P:protein catabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006508">
        <property type="term" value="P:proteolysis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.58.760">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01458">
        <property type="entry name" value="FtsH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003593">
        <property type="entry name" value="AAA+_ATPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041569">
        <property type="entry name" value="AAA_lid_3"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003959">
        <property type="entry name" value="ATPase_AAA_core"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003960">
        <property type="entry name" value="ATPase_AAA_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005936">
        <property type="entry name" value="FtsH"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011546">
        <property type="entry name" value="Pept_M41_FtsH_extracell"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000642">
        <property type="entry name" value="Peptidase_M41"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037219">
        <property type="entry name" value="Peptidase_M41-like"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00004">
        <property type="entry name" value="AAA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF17862">
        <property type="entry name" value="AAA_lid_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF06480">
        <property type="entry name" value="FtsH_ext"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01434">
        <property type="entry name" value="Peptidase_M41"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00382">
        <property type="entry name" value="AAA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF140990">
        <property type="entry name" value="SSF140990"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01241">
        <property type="entry name" value="FtsH_fam"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00674">
        <property type="entry name" value="AAA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5 6" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="5" id="KW-0997">Cell inner membrane</keyword>
    <keyword evidence="5" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="3 5 9" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="5" id="KW-0472">Membrane</keyword>
    <keyword evidence="5" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="4 5 9" id="KW-0482">Metalloprotease</keyword>
    <keyword evidence="5 6" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="2 5 9" id="KW-0645">Protease</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="5" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="5" id="KW-1133">Transmembrane helix</keyword>
    <keyword evidence="5" id="KW-0862">Zinc</keyword>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="6"/>
            <end position="23"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="106"/>
            <end position="128"/>
        </location>
    </feature>
    <feature type="domain" description="AAA" evidence="8">
        <location>
            <begin position="193"/>
            <end position="332"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="7">
        <location>
            <begin position="596"/>
            <end position="640"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="7">
        <location>
            <begin position="596"/>
            <end position="610"/>
        </location>
    </feature>
    <feature type="active site" evidence="5">
        <location>
            <position position="424"/>
        </location>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <begin position="201"/>
            <end position="208"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <position position="423"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
            <note>catalytic</note>
        </ligand>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <position position="427"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
            <note>catalytic</note>
        </ligand>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <position position="499"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
            <note>catalytic</note>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00010044"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022670"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023049"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01458"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="RuleBase" id="RU003651"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="SMART" id="SM00382"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="ABX37554.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="640" mass="70388" checksum="5917A95C1BD66984" modified="2008-01-15" version="1"> </sequence>
</entry>
<entry dataset="Swiss-Prot" created="2010-02-09" modified="2022-08-03" version="76" xmlns="http://uniprot.org/uniprot">
    <accession>A9BMQ0</accession>
    <name>Y4966_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">UPF0761 membrane protein Daci_4966</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name type="ordered locus">Daci_4966</name>
    </gene>
    <organism>
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference key="1">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain>DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Cell inner membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="1">Belongs to the UPF0761 family.</text>
    </comment>
    <comment type="sequence caution" evidence="2">
        <conflict type="erroneous initiation">
            <sequence resource="EMBL-CDS" id="ABX37595" version="1"/>
        </conflict>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX37595.1"/>
        <property type="status" value="ALT_INIT"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A9BMQ0"/>
    <dbReference type="SMR" id="A9BMQ0"/>
    <dbReference type="STRING" id="398578.Daci_4966"/>
    <dbReference type="PRIDE" id="A9BMQ0"/>
    <dbReference type="EnsemblBacteria" id="ABX37595">
        <property type="protein sequence ID" value="ABX37595"/>
        <property type="gene ID" value="Daci_4966"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_4966"/>
    <dbReference type="eggNOG" id="COG1295">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_032288_1_2_4"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005887">
        <property type="term" value="C:integral component of plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00672">
        <property type="entry name" value="UPF0761"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023679">
        <property type="entry name" value="UPF0761_bac"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017039">
        <property type="entry name" value="Virul_fac_BrkB"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30213">
        <property type="entry name" value="PTHR30213"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03631">
        <property type="entry name" value="Virul_fac_BrkB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00765">
        <property type="entry name" value="yihY_not_rbn"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword id="KW-0997">Cell inner membrane</keyword>
    <keyword id="KW-1003">Cell membrane</keyword>
    <keyword id="KW-0472">Membrane</keyword>
    <keyword id="KW-1185">Reference proteome</keyword>
    <keyword id="KW-0812">Transmembrane</keyword>
    <keyword id="KW-1133">Transmembrane helix</keyword>
    <feature type="chain" id="PRO_0000391032" description="UPF0761 membrane protein Daci_4966">
        <location>
            <begin position="1"/>
            <end position="417"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="49"/>
            <end position="69"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="106"/>
            <end position="126"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="146"/>
            <end position="166"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="187"/>
            <end position="207"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="235"/>
            <end position="255"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="256"/>
            <end position="276"/>
        </location>
    </feature>
    <evidence type="ECO:0000255" key="1">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00672"/>
        </source>
    </evidence>
    <evidence type="ECO:0000305" key="2"/>
    <sequence length="417" mass="46406" checksum="592100256C35CAF7" modified="2010-02-09" version="2">MERPEPVVPPSWRERLRCFPWRNTAHTLRERFREDRLGVTASSLTFTTVLALVPFFTVALALFTAFPIFSRVQIVLERWLIDSLIPETIARQVLGYLTQFASKASQLGMAGFSILVITAVALILTIDRTLNNIWRVRQLRPLGQRVLIYWAAITLGPLVLGLSLVLSSYVMSASRGLVNALPEGLRFIFDSIEYLALAAGMAGLYHYVPNTAVRWRHAWVGGLFVATCMELAKKALGLYLASVPTYSVIYGTFATLPILLIWIYMAWIIVLLGAVVTAYLPIVMAGVQRMPGQQGWQFEMAVEILQYLEQERESPAKGLYASDLARRLHVDWQQIDPVLQALSVLDWVGTVQAPGVAAGSEGTEPRYMLLVDPQHTPLAPLVERLLLAPSAAVQPLWERTGLAGMTLASLLESRPRP</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2021-09-29" version="56" xmlns="http://uniprot.org/uniprot">
    <accession>A9BMS4</accession>
    <name>A9BMS4_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Ig domain protein group 1 domain protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ordered locus">Daci_4990</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="5" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX37619.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012206789.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_4990"/>
    <dbReference type="EnsemblBacteria" id="ABX37619">
        <property type="protein sequence ID" value="ABX37619"/>
        <property type="gene ID" value="Daci_4990"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_4990"/>
    <dbReference type="eggNOG" id="COG1404">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="eggNOG" id="COG2374">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="eggNOG" id="COG4625">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_247190_0_0_4"/>
    <dbReference type="OMA" id="GSEDDAC"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003344">
        <property type="entry name" value="Big_1_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008964">
        <property type="entry name" value="Invasin/intimin_cell_adhesion"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR026442">
        <property type="entry name" value="IPTL_CTERM"/>
    </dbReference>
    <dbReference type="Pfam" id="PF18203">
        <property type="entry name" value="IPTL-CTERM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00634">
        <property type="entry name" value="BID_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF49373">
        <property type="entry name" value="SSF49373"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR04174">
        <property type="entry name" value="IPTL_CTERM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0732">Signal</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="signal peptide" evidence="2">
        <location>
            <begin position="1"/>
            <end position="19"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5002735824" evidence="2">
        <location>
            <begin position="20"/>
            <end position="1532"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="1506"/>
            <end position="1523"/>
        </location>
    </feature>
    <feature type="domain" description="Big-1" evidence="3">
        <location>
            <begin position="730"/>
            <end position="825"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="SMART" id="SM00634"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="ABX37619.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="1532" mass="154389" checksum="DA5E658B26AAA3D8" modified="2008-01-15" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="46" xmlns="http://uniprot.org/uniprot">
    <accession>A9BMS5</accession>
    <name>A9BMS5_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Daci_4991</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="2" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX37620.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012206790.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_4991"/>
    <dbReference type="PRIDE" id="A9BMS5"/>
    <dbReference type="EnsemblBacteria" id="ABX37620">
        <property type="protein sequence ID" value="ABX37620"/>
        <property type="gene ID" value="Daci_4991"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_4991"/>
    <dbReference type="eggNOG" id="COG0823">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_668760_0_0_4"/>
    <dbReference type="OMA" id="DETCFLH"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.130.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015943">
        <property type="entry name" value="WD40/YVTN_repeat-like_dom_sf"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ABX37620.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="430" mass="49002" checksum="0EAC5795891A2C9E" modified="2008-01-15" version="1">MKRSMTSNTPASFVPCRRLGDGRQHHFFGYYNKSSWDRSNRLVLAQQTPWMDQYLTPQARASIGYFDTENGDCFHAVGETGAWNWQMGSQLQWLDGLAGRQLIHNDRTADSGGRYPGFGSVVIDVDSGERRTLPMPVYVVAPSSAWALCVDYRRLYITHETIGYSEEGGPFALPLAPEEDGIWRMEVATGEARLLASYARLKAFHHRTSMDKAIHWVSHIEVNPSSSRILFLHRWTERVKDETCFLHRLITMAPDGSDMRLLECSDHPLPQLAGDFDPMAVGTFDYEKSEYQISHPLWQDDSHIIVWGPHAGAIHYHLYDDVEGGDVQVVGAGVLVENGHMSFSPVDTRWLLSDTYPGDRTHERFLFLYDMHTGERHDLGSFYASPDLSKENRCDLHPRWSRDGRQVCIDSVHEHQRQMYVLDVSGIVEA</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="49" xmlns="http://uniprot.org/uniprot">
    <accession>A9BMX0</accession>
    <name>A9BMX0_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_5036</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX37665.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012206835.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_5036"/>
    <dbReference type="PRIDE" id="A9BMX0"/>
    <dbReference type="EnsemblBacteria" id="ABX37665">
        <property type="protein sequence ID" value="ABX37665"/>
        <property type="gene ID" value="Daci_5036"/>
    </dbReference>
    <dbReference type="GeneID" id="60689384"/>
    <dbReference type="KEGG" id="dac:Daci_5036"/>
    <dbReference type="eggNOG" id="ENOG5032Y12">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_177491_0_0_4"/>
    <dbReference type="OMA" id="AEHWMRV"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR021831">
        <property type="entry name" value="ParD-like"/>
    </dbReference>
    <dbReference type="Pfam" id="PF11903">
        <property type="entry name" value="ParD_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="66"/>
            <end position="91"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX37665.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="91" mass="9717" checksum="AA011883CF9C01DC" modified="2008-01-15" version="1">MGIVKISDQLHDQIRLSSAALGRSINAQAEHWLRVGQLAEHHPHLDYAGICALLLQEAAATLKLGEPEAAPAPADTAARRPRPVRLSGGLQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="92" xmlns="http://uniprot.org/uniprot">
    <accession>A9BN17</accession>
    <name>A9BN17_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="5">DNA topoisomerase 4 subunit A</fullName>
            <ecNumber evidence="5">5.6.2.2</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="5">Topoisomerase IV subunit A</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="5" type="primary">parC</name>
        <name evidence="9" type="ordered locus">Daci_5083</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="9 10" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="10" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="5">Topoisomerase IV is essential for chromosome segregation. It relaxes supercoiled DNA. Performs the decatenation events required during the replication of a circular DNA molecule.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1 5">
            <text>ATP-dependent breakage, passage and rejoining of double-stranded DNA.</text>
            <dbReference type="EC" id="5.6.2.2"/>
        </reaction>
    </comment>
    <comment type="subunit">
        <text evidence="5">Heterotetramer composed of ParC and ParE.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="5">Cell membrane</location>
            <topology evidence="5">Peripheral membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="5">Belongs to the type II topoisomerase GyrA/ParC subunit family. ParC type 1 subfamily.</text>
    </comment>
    <dbReference type="EC" id="5.6.2.2" evidence="5"/>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX37712.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012206882.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_5083"/>
    <dbReference type="PRIDE" id="A9BN17"/>
    <dbReference type="EnsemblBacteria" id="ABX37712">
        <property type="protein sequence ID" value="ABX37712"/>
        <property type="gene ID" value="Daci_5083"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_5083"/>
    <dbReference type="eggNOG" id="COG0188">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_002977_4_1_4"/>
    <dbReference type="OMA" id="PRSNRID"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005694">
        <property type="term" value="C:chromosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0019897">
        <property type="term" value="C:extrinsic component of plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003918">
        <property type="term" value="F:DNA topoisomerase type II (double strand cut, ATP-hydrolyzing) activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0007059">
        <property type="term" value="P:chromosome segregation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006265">
        <property type="term" value="P:DNA topological change"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd00187">
        <property type="entry name" value="TOP4c"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.268.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.120.10.90">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.199.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00936">
        <property type="entry name" value="ParC_type1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006691">
        <property type="entry name" value="GyrA/parC_rep"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035516">
        <property type="entry name" value="Gyrase/topoIV_suA_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013760">
        <property type="entry name" value="Topo_IIA-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013758">
        <property type="entry name" value="Topo_IIA_A/C_ab"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013757">
        <property type="entry name" value="Topo_IIA_A_a_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002205">
        <property type="entry name" value="Topo_IIA_dom_A"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005742">
        <property type="entry name" value="TopoIV_A_Gneg"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03989">
        <property type="entry name" value="DNA_gyraseA_C"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00521">
        <property type="entry name" value="DNA_topoisoIV"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00434">
        <property type="entry name" value="TOP4c"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF101904">
        <property type="entry name" value="SSF101904"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56719">
        <property type="entry name" value="SSF56719"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="6" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="3 5" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="4 5 9" id="KW-0413">Isomerase</keyword>
    <keyword evidence="5" id="KW-0472">Membrane</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 5" id="KW-0799">Topoisomerase</keyword>
    <feature type="domain" description="TOP4c" evidence="8">
        <location>
            <begin position="18"/>
            <end position="497"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="7">
        <location>
            <begin position="753"/>
            <end position="795"/>
        </location>
    </feature>
    <feature type="coiled-coil region" evidence="6">
        <location>
            <begin position="462"/>
            <end position="489"/>
        </location>
    </feature>
    <feature type="active site" description="O-(5'-phospho-DNA)-tyrosine intermediate" evidence="5">
        <location>
            <position position="136"/>
        </location>
    </feature>
    <feature type="site" description="Interaction with DNA" evidence="5">
        <location>
            <position position="49"/>
        </location>
    </feature>
    <feature type="site" description="Interaction with DNA" evidence="5">
        <location>
            <position position="92"/>
        </location>
    </feature>
    <feature type="site" description="Interaction with DNA" evidence="5">
        <location>
            <position position="94"/>
        </location>
    </feature>
    <feature type="site" description="Transition state stabilizer" evidence="5">
        <location>
            <position position="135"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00000185"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023029"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023235"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00936"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="SMART" id="SM00434"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="ABX37712.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="795" mass="86207" checksum="B5D62561C4D5B0F6" modified="2008-01-15" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="80" xmlns="http://uniprot.org/uniprot">
    <accession>A9BN56</accession>
    <name>A9BN56_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Agmatinase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ordered locus">Daci_5122</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="6" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the arginase family. Agmatinase subfamily.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX37751.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012206921.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_5122"/>
    <dbReference type="PRIDE" id="A9BN56"/>
    <dbReference type="EnsemblBacteria" id="ABX37751">
        <property type="protein sequence ID" value="ABX37751"/>
        <property type="gene ID" value="Daci_5122"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_5122"/>
    <dbReference type="eggNOG" id="COG0010">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_039478_0_0_4"/>
    <dbReference type="OMA" id="HYAGVNH"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016813">
        <property type="term" value="F:hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amidines"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:1901564">
        <property type="term" value="P:organonitrogen compound metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005925">
        <property type="entry name" value="Agmatinase-rel"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006035">
        <property type="entry name" value="Ureohydrolase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023696">
        <property type="entry name" value="Ureohydrolase_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020855">
        <property type="entry name" value="Ureohydrolase_Mn_BS"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11358">
        <property type="entry name" value="PTHR11358"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00491">
        <property type="entry name" value="Arginase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52768">
        <property type="entry name" value="SSF52768"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01230">
        <property type="entry name" value="agmatinase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01053">
        <property type="entry name" value="ARGINASE_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51409">
        <property type="entry name" value="ARGINASE_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3 4" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="2" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00009227"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="RuleBase" id="RU003684"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="ABX37751.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="356" mass="37928" checksum="8C2BDC3F69607514" modified="2008-01-15" version="1">MTLFTPDRLQALRARFGGANESVIHDPHFRAVAAHIIDASGTRNAPYAGMPTLLDAPMRPMDWSRPDFGDLQAALIGVPMDLGISNRSGCRFGPRALRSIERVGPYNHVLRSAPTRELRVADIGDVPLSSRYSLEQSHRDIESIFAKIHAAGVIPLSAGGDHSITLPILRALGRERPLALVHFDAHCDTGGPFDGSRFHHGGPFRQAVLDGVLDPTRTIQIGIRGAAEYLWEFSYESGMTVIHAEELPALGVDGVIARAREVVGDTPVYVSFDIDCLDPAFAPGTGTPEVGGITVREAQAMVRGLAGIHIVGGDVVEVSPAYDATTNTAHAGAQMMFEILGLICARHAGSGAAQPA</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="66" xmlns="http://uniprot.org/uniprot">
    <accession>A9BN61</accession>
    <name>A9BN61_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">N-acetylmuramoyl-L-alanine amidase</fullName>
            <ecNumber evidence="2">3.5.1.28</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="6" type="ordered locus">Daci_5127</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="7" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>Hydrolyzes the link between N-acetylmuramoyl residues and L-amino acid residues in certain cell-wall glycopeptides.</text>
            <dbReference type="EC" id="3.5.1.28"/>
        </reaction>
    </comment>
    <dbReference type="EC" id="3.5.1.28" evidence="2"/>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX37756.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012206926.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_5127"/>
    <dbReference type="PRIDE" id="A9BN61"/>
    <dbReference type="EnsemblBacteria" id="ABX37756">
        <property type="protein sequence ID" value="ABX37756"/>
        <property type="gene ID" value="Daci_5127"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_5127"/>
    <dbReference type="eggNOG" id="COG0860">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_014322_2_2_4"/>
    <dbReference type="OMA" id="KRYFAAN"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008745">
        <property type="term" value="F:N-acetylmuramoyl-L-alanine amidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009253">
        <property type="term" value="P:peptidoglycan catabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd02696">
        <property type="entry name" value="MurNAc-LAA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR021731">
        <property type="entry name" value="AMIN_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002508">
        <property type="entry name" value="MurNAc-LAA_cat"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01520">
        <property type="entry name" value="Amidase_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF11741">
        <property type="entry name" value="AMIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00646">
        <property type="entry name" value="Ami_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="6" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0732">Signal</keyword>
    <feature type="domain" description="MurNAc-LAA" evidence="5">
        <location>
            <begin position="326"/>
            <end position="481"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="4">
        <location>
            <begin position="166"/>
            <end position="237"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Pro residues" evidence="4">
        <location>
            <begin position="173"/>
            <end position="192"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Pro residues" evidence="4">
        <location>
            <begin position="217"/>
            <end position="237"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001561"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00011901"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022729"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="SMART" id="SM00646"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="ABX37756.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="496" mass="52520" checksum="A6FEF28CA3414EFC" modified="2008-01-15" version="1">MSDANSSSYPSGLSRRNLLQAGSIVLLLGRQHIAHGATIVAVRVWPAPEYTRVTIESDRPLAAKQFFVDQPPRLAVDIEGIDLNPALRELVAKVRSDDPNIASIRVGQNSPSVVRLVIDLKQPAKPQVFTLQPVAAYKHRLVFDLYPAKAVDPLEALISERLRDASGDDTAVASAPPPPPPLPRPSGPTAPAPDPLGDLIAQHSSGSGGKTPAPPAVVAQAPSPAAPAPAPRPAAPAPVPAPAPIAAPNIATSRQTDRIIIVALDPGHGGEDPGATGPSGTREKDVVLKIAHLLRDRINDTRIGGSPMRAFMTRDADFFVPLATRVEKARRVQADLFISIHADAFTTPAARGASVFALSDKGASSTAARWLANKENQSDIVGGLNIGSQDQHVQRMLLDMSTTAQIKDSLKLGGALLGEIGNMAKLHKPRVEQAGFAVLKAPDIPSVLVETAFISNPEEEARLRSSAYQVQLADALMRGIRNYFAHNPPLARSRSV</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="76" xmlns="http://uniprot.org/uniprot">
    <accession>A9BNG2</accession>
    <name>A9BNG2_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">Primosomal replication protein N</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="primary">priB</name>
        <name evidence="5" type="ordered locus">Daci_5228</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="6" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="3">Binds single-stranded DNA at the primosome assembly site (PAS).</text>
    </comment>
    <comment type="subunit">
        <text evidence="3">Component of the preprimosomal complex composed of PriA, PriB, PriC, DnaB and DnaT. Upon transient interaction with DnaG it forms the primosome.</text>
    </comment>
    <comment type="similarity">
        <text evidence="3">Belongs to the PriB family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX37857.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012207027.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_5228"/>
    <dbReference type="PRIDE" id="A9BNG2"/>
    <dbReference type="EnsemblBacteria" id="ABX37857">
        <property type="protein sequence ID" value="ABX37857"/>
        <property type="gene ID" value="Daci_5228"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_5228"/>
    <dbReference type="eggNOG" id="COG2965">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_166075_1_2_4"/>
    <dbReference type="OMA" id="LLDCEGF"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:1990077">
        <property type="term" value="C:primosome complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003697">
        <property type="term" value="F:single-stranded DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006269">
        <property type="term" value="P:DNA replication, synthesis of RNA primer"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.50.140">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00720">
        <property type="entry name" value="PriB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012340">
        <property type="entry name" value="NA-bd_OB-fold"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000424">
        <property type="entry name" value="Primosome_PriB/ssb"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023646">
        <property type="entry name" value="Prisomal_replication_PriB"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00436">
        <property type="entry name" value="SSB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF003135">
        <property type="entry name" value="Primosomal_n"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50249">
        <property type="entry name" value="SSF50249"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR04418">
        <property type="entry name" value="PriB_gamma"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50935">
        <property type="entry name" value="SSB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-0235">DNA replication</keyword>
    <keyword evidence="2 3 4" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="1 3" id="KW-0639">Primosome</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022515"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00720"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00252"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="ABX37857.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="96" mass="10451" checksum="73D7B861B56B260F" modified="2008-01-15" version="1">MENHVALTAAIAELQALRYTPAGLPALELRLEHASRQKEAGSERSVTASVKAVAFGALAEKLARQALGSQWKFQGFLATPRNGKLLVFHIQDIQQN</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="100" xmlns="http://uniprot.org/uniprot">
    <accession>A9BNI2</accession>
    <name>A9BNI2_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="8">Lysine--tRNA ligase</fullName>
            <ecNumber evidence="8">6.1.1.6</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="8">Lysyl-tRNA synthetase</fullName>
            <shortName evidence="8">LysRS</shortName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="8" type="primary">lysS</name>
        <name evidence="12" type="ordered locus">Daci_5248</name>
    </gene>
    <organism evidence="12 13">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="12 13" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="13">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="13" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="13">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="1 8 9">
            <text>ATP + L-lysine + tRNA(Lys) = AMP + diphosphate + L-lysyl-tRNA(Lys)</text>
            <dbReference type="Rhea" id="RHEA:20792"/>
            <dbReference type="Rhea" id="RHEA-COMP:9696"/>
            <dbReference type="Rhea" id="RHEA-COMP:9697"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:32551"/>
            <dbReference type="ChEBI" id="CHEBI:33019"/>
            <dbReference type="ChEBI" id="CHEBI:78442"/>
            <dbReference type="ChEBI" id="CHEBI:78529"/>
            <dbReference type="ChEBI" id="CHEBI:456215"/>
            <dbReference type="EC" id="6.1.1.6"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="8 9">
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </cofactor>
        <text evidence="8 9">Binds 3 Mg(2+) ions per subunit.</text>
    </comment>
    <comment type="subunit">
        <text evidence="8">Homodimer.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="8">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2 8">Belongs to the class-II aminoacyl-tRNA synthetase family.</text>
    </comment>
    <dbReference type="EC" id="6.1.1.6" evidence="8"/>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX37877.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012207047.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_5248"/>
    <dbReference type="PRIDE" id="A9BNI2"/>
    <dbReference type="EnsemblBacteria" id="ABX37877">
        <property type="protein sequence ID" value="ABX37877"/>
        <property type="gene ID" value="Daci_5248"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_5248"/>
    <dbReference type="eggNOG" id="COG1190">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_008255_6_0_4"/>
    <dbReference type="OMA" id="EIFGEKC"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004824">
        <property type="term" value="F:lysine-tRNA ligase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000287">
        <property type="term" value="F:magnesium ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003676">
        <property type="term" value="F:nucleic acid binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006430">
        <property type="term" value="P:lysyl-tRNA aminoacylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd00775">
        <property type="entry name" value="LysRS_core"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="CDD" id="cd04322">
        <property type="entry name" value="LysRS_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.50.140">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.930.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00252">
        <property type="entry name" value="Lys_tRNA_synth_class2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004364">
        <property type="entry name" value="Aa-tRNA-synt_II"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006195">
        <property type="entry name" value="aa-tRNA-synth_II"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045864">
        <property type="entry name" value="aa-tRNA-synth_II/BPL/LPL"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002313">
        <property type="entry name" value="Lys-tRNA-ligase_II"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR044136">
        <property type="entry name" value="Lys-tRNA-ligase_II_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018149">
        <property type="entry name" value="Lys-tRNA-synth_II_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012340">
        <property type="entry name" value="NA-bd_OB-fold"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004365">
        <property type="entry name" value="NA-bd_OB_tRNA"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00152">
        <property type="entry name" value="tRNA-synt_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01336">
        <property type="entry name" value="tRNA_anti-codon"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00982">
        <property type="entry name" value="TRNASYNTHLYS"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50249">
        <property type="entry name" value="SSF50249"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55681">
        <property type="entry name" value="SSF55681"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00499">
        <property type="entry name" value="lysS_bact"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50862">
        <property type="entry name" value="AA_TRNA_LIGASE_II"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="7 8 12" id="KW-0030">Aminoacyl-tRNA synthetase</keyword>
    <keyword evidence="5 8" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="8" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="3 8" id="KW-0436">Ligase</keyword>
    <keyword evidence="8 9" id="KW-0460">Magnesium</keyword>
    <keyword evidence="8 9" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="4 8" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="6 8" id="KW-0648">Protein biosynthesis</keyword>
    <keyword evidence="13" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="AA_TRNA_LIGASE_II" evidence="11">
        <location>
            <begin position="206"/>
            <end position="513"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="10">
        <location>
            <begin position="1"/>
            <end position="20"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="10">
        <location>
            <begin position="1"/>
            <end position="19"/>
        </location>
    </feature>
    <feature type="binding site" evidence="8">
        <location>
            <position position="429"/>
        </location>
        <ligand>
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
            <label>1</label>
        </ligand>
    </feature>
    <feature type="binding site" evidence="8">
        <location>
            <position position="436"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00000204"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00008226"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022598"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022917"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023146"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00252"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="RuleBase" id="RU000336"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="11">
        <source>
            <dbReference type="PROSITE" id="PS50862"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="EMBL" id="ABX37877.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="13">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="519" mass="58933" checksum="923D74471EEB9C4E" modified="2008-01-15" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="50" xmlns="http://uniprot.org/uniprot">
    <accession>A9BNK9</accession>
    <name>A9BNK9_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">Large ribosomal RNA subunit accumulation protein YceD</fullName>
        </recommendedName>
        <alternativeName>
            <fullName evidence="4">23S rRNA accumulation protein YceD</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="5" type="ordered locus">Daci_5275</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="6" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="1">Plays a role in synthesis, processing and/or stability of 23S rRNA.</text>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the DUF177 domain family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX37904.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012207073.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_5275"/>
    <dbReference type="PRIDE" id="A9BNK9"/>
    <dbReference type="EnsemblBacteria" id="ABX37904">
        <property type="protein sequence ID" value="ABX37904"/>
        <property type="gene ID" value="Daci_5275"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_5275"/>
    <dbReference type="eggNOG" id="COG1399">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_094127_0_0_4"/>
    <dbReference type="OMA" id="CMTPYDQ"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003772">
        <property type="entry name" value="YceD"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR039255">
        <property type="entry name" value="YceD_bac"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR38099">
        <property type="entry name" value="PTHR38099"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02620">
        <property type="entry name" value="YceD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00002868"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00010740"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00015716"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00031841"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="ABX37904.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="185" mass="20407" checksum="0527B2739071B5C2" modified="2008-01-15" version="1">MSKEFSAARLDVRAFAQSQGHLQDQTTLSVFPRLAQDAQPDAGDTHGQVHWQADGELVEQTGGPGQVWLYLQADAVVPMVCQRCLALAPITLQVDRSFRFVVDEATAESEDDESDEDLLVLSREFNLLELIEDELLMELPVVPRHDVCPESVSLQSSDADFEQAIEDKPNPFAVLRGLDVGKSAD</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="75" xmlns="http://uniprot.org/uniprot">
    <accession>A9BNX9</accession>
    <name>A9BNX9_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Type II secretion system protein E</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Daci_5395</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="4" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the GSP E family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX38024.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012207193.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_5395"/>
    <dbReference type="PRIDE" id="A9BNX9"/>
    <dbReference type="EnsemblBacteria" id="ABX38024">
        <property type="protein sequence ID" value="ABX38024"/>
        <property type="gene ID" value="Daci_5395"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_5395"/>
    <dbReference type="eggNOG" id="COG2804">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_013446_10_3_4"/>
    <dbReference type="OMA" id="IVNIVDW"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.300.160">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003593">
        <property type="entry name" value="AAA+_ATPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001482">
        <property type="entry name" value="T2SS/T4SS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037257">
        <property type="entry name" value="T2SS_E_N_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007831">
        <property type="entry name" value="T2SS_GspE_N"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00437">
        <property type="entry name" value="T2SSE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF05157">
        <property type="entry name" value="T2SSE_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00382">
        <property type="entry name" value="AAA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF160246">
        <property type="entry name" value="SSF160246"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00662">
        <property type="entry name" value="T2SP_E"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="T2SP_E" evidence="2">
        <location>
            <begin position="415"/>
            <end position="429"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00006611"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS00662"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ABX38024.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="600" mass="66263" checksum="82D043B6E9F9BEDB" modified="2008-01-15" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="53" xmlns="http://uniprot.org/uniprot">
    <accession>A9BNZ3</accession>
    <name>A9BNZ3_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Daci_5409</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="2" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX38038.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012207207.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_5409"/>
    <dbReference type="PRIDE" id="A9BNZ3"/>
    <dbReference type="EnsemblBacteria" id="ABX38038">
        <property type="protein sequence ID" value="ABX38038"/>
        <property type="gene ID" value="Daci_5409"/>
    </dbReference>
    <dbReference type="GeneID" id="60689757"/>
    <dbReference type="KEGG" id="dac:Daci_5409"/>
    <dbReference type="eggNOG" id="COG4380">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_097432_1_0_4"/>
    <dbReference type="OMA" id="EAGYYVM"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008517">
        <property type="entry name" value="DUF799"/>
    </dbReference>
    <dbReference type="Pfam" id="PF05643">
        <property type="entry name" value="DUF799"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ABX38038.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="220" mass="23173" checksum="24BF6209DED5794F" modified="2008-01-15" version="1">MRLTDHIKTLALAMTVALTGCATTAPYDYAALRASKPASILVMPALNQSPEVNAPAGVLSQITLPLAEAGYYVLPVAVTEEMFRQNGIVSADDAQELPVAKLREIFGADAALYLNIRNYGTSYAVISSASVVTLEARLVDLRTGTQLWDGSATASSAEGQSSGGGLVGILVTALLNQILDTMNDRSVQIASIANQRLLSPMAQRGLLPGPRSPDYGKPRN</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="50" xmlns="http://uniprot.org/uniprot">
    <accession>A9BP36</accession>
    <name>A9BP36_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Daci_5452</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="2" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX38081.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012207250.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_5452"/>
    <dbReference type="PRIDE" id="A9BP36"/>
    <dbReference type="EnsemblBacteria" id="ABX38081">
        <property type="protein sequence ID" value="ABX38081"/>
        <property type="gene ID" value="Daci_5452"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_5452"/>
    <dbReference type="eggNOG" id="COG1462">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_069625_0_0_4"/>
    <dbReference type="OMA" id="QSGCFRV"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030288">
        <property type="term" value="C:outer membrane-bounded periplasmic space"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005534">
        <property type="entry name" value="Curli_assmbl/transp-comp_CsgG"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03783">
        <property type="entry name" value="CsgG"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ABX38081.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="271" mass="27731" checksum="111DDB0295180A13" modified="2008-01-15" version="1">MRFQGIASVALAALAGLGLSGCGEKKTELGQGGSEITGSAGPLGANNGSRELVRCDAPVATLALAENPNGYVMGSGYQLPASPVPLIKLLAQQSGCFRVVDRGAGLRGTVQEQDLKNAGVLRENSTVRKGRGYEAQYTLTPSLTFSEQDAGRGLAGVVAMIPVLRDIAGLVGMVEQVKFKEAQTALLLSDNETTEQVAAATGAARTTDLGVGGMVLGRLGAAGAGWSNTNEGKVIAAAFLDAHNQLVHQVRALQAKELPPPVATKAVQGKG</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="93" xmlns="http://uniprot.org/uniprot">
    <accession>A9BPC8</accession>
    <name>A9BPC8_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="3 5 7">Histidine ammonia-lyase</fullName>
            <shortName evidence="5">Histidase</shortName>
            <ecNumber evidence="3 5 7">4.3.1.3</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="5" type="primary">hutH</name>
        <name evidence="9" type="ordered locus">Daci_0149</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="9 10" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="10" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="1 5 7">
            <text>L-histidine = NH4(+) + trans-urocanate</text>
            <dbReference type="Rhea" id="RHEA:21232"/>
            <dbReference type="ChEBI" id="CHEBI:17771"/>
            <dbReference type="ChEBI" id="CHEBI:28938"/>
            <dbReference type="ChEBI" id="CHEBI:57595"/>
            <dbReference type="EC" id="4.3.1.3"/>
        </reaction>
    </comment>
    <comment type="pathway">
        <text evidence="2 5 7">Amino-acid degradation; L-histidine degradation into L-glutamate; N-formimidoyl-L-glutamate from L-histidine: step 1/3.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="5 8">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="PTM">
        <text evidence="5">Contains an active site 4-methylidene-imidazol-5-one (MIO), which is formed autocatalytically by cyclization and dehydration of residues Ala-Ser-Gly.</text>
    </comment>
    <comment type="similarity">
        <text evidence="5 6">Belongs to the PAL/histidase family.</text>
    </comment>
    <dbReference type="EC" id="4.3.1.3" evidence="3 5 7"/>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX32795.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012202088.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_0149"/>
    <dbReference type="PRIDE" id="A9BPC8"/>
    <dbReference type="EnsemblBacteria" id="ABX32795">
        <property type="protein sequence ID" value="ABX32795"/>
        <property type="gene ID" value="Daci_0149"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_0149"/>
    <dbReference type="eggNOG" id="COG2986">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_014801_4_0_4"/>
    <dbReference type="OMA" id="CAPQVAG"/>
    <dbReference type="UniPathway" id="UPA00379">
        <property type="reaction ID" value="UER00549"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004397">
        <property type="term" value="F:histidine ammonia-lyase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0019556">
        <property type="term" value="P:histidine catabolic process to glutamate and formamide"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniPathway"/>
    </dbReference>
    <dbReference type="GO" id="GO:0019557">
        <property type="term" value="P:histidine catabolic process to glutamate and formate"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniPathway"/>
    </dbReference>
    <dbReference type="CDD" id="cd00332">
        <property type="entry name" value="PAL-HAL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.275.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00229">
        <property type="entry name" value="His_ammonia_lyase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001106">
        <property type="entry name" value="Aromatic_Lyase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR024083">
        <property type="entry name" value="Fumarase/histidase_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005921">
        <property type="entry name" value="HutH"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008948">
        <property type="entry name" value="L-Aspartase-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR022313">
        <property type="entry name" value="Phe/His_NH3-lyase_AS"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10362">
        <property type="entry name" value="PTHR10362"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00221">
        <property type="entry name" value="Lyase_aromatic"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48557">
        <property type="entry name" value="SSF48557"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01225">
        <property type="entry name" value="hutH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00488">
        <property type="entry name" value="PAL_HISTIDASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="4 5 7" id="KW-0369">Histidine metabolism</keyword>
    <keyword evidence="5 6 9" id="KW-0456">Lyase</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <feature type="modified residue" description="2,3-didehydroalanine (Ser)" evidence="5">
        <location>
            <position position="157"/>
        </location>
    </feature>
    <feature type="cross-link" description="5-imidazolinone (Ala-Gly)" evidence="5">
        <location>
            <begin position="156"/>
            <end position="158"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00000171"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00005113"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00012994"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022808"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00229"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="RuleBase" id="RU003954"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="RuleBase" id="RU004479"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="RuleBase" id="RU004480"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="ABX32795.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="523" mass="54542" checksum="737CEECC119DC154" modified="2008-01-15" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="39" xmlns="http://uniprot.org/uniprot">
    <accession>A9BPE9</accession>
    <name>A9BPE9_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Putative Fe-S oxidoreductase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_0170</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX32816.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012202109.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_0170"/>
    <dbReference type="PRIDE" id="A9BPE9"/>
    <dbReference type="EnsemblBacteria" id="ABX32816">
        <property type="protein sequence ID" value="ABX32816"/>
        <property type="gene ID" value="Daci_0170"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_0170"/>
    <dbReference type="eggNOG" id="ENOG50335IK">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_673907_0_0_4"/>
    <dbReference type="OMA" id="YEGRAPC"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="69"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="175"/>
            <end position="198"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Pro residues" evidence="1">
        <location>
            <begin position="1"/>
            <end position="31"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Pro residues" evidence="1">
        <location>
            <begin position="47"/>
            <end position="62"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX32816.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="478" mass="46871" checksum="A724F43AFB19FB1D" modified="2008-01-15" version="1">MSSPLPPVPSPAAGLPLPVAAPVPGPAAGAPVAPQAPSAAVAPASPASPTSPAPPASSASPSIPVTPPAATAVRWSPEMLQSLRLQAFEQLVAQLARQVQSSPGAPAPQWPASGVSEALGRLLEALLAQVGTQQGQALQLLAAQPGSAALLQALAAGTTAGAAAGTAAGTAAAGGQAQSSQSPQTGTSASAQAGAAPQATSSSPALQAAASLQPSAAAVTLAVAAAKAKVVDALLAGSGLAPQAGASAPGGVAGGPTQTLPALQSWWVQQGTLLTPQGERGFTLSLQVPQAWAQAQGAAMALAAASASAPGAALFTAAAALPAGAALPLAGAQAAEPGLRLPLDASLQSLASGPVAVVVQPRGADALRTSALLLLELQPLRQPGGAMATPAGLASVASLSPALAQEVQQMLQQRNDPWLHMAAAQASGALPRERRAFEHQSHFCTTEGCQYEGRAPCAQPFCSEMNRLWDVSRTERSR</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="63" xmlns="http://uniprot.org/uniprot">
    <accession>A9BPG5</accession>
    <name>A9BPG5_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="3">AMP-dependent synthetase and ligase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Daci_0186</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="4" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX32832.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012202125.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_0186"/>
    <dbReference type="PRIDE" id="A9BPG5"/>
    <dbReference type="EnsemblBacteria" id="ABX32832">
        <property type="protein sequence ID" value="ABX32832"/>
        <property type="gene ID" value="Daci_0186"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_0186"/>
    <dbReference type="eggNOG" id="COG0318">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_000022_59_10_4"/>
    <dbReference type="OMA" id="IRLMYTS"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016874">
        <property type="term" value="F:ligase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.300.30">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.12780">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025110">
        <property type="entry name" value="AMP-bd_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045851">
        <property type="entry name" value="AMP-bd_C_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020845">
        <property type="entry name" value="AMP-binding_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000873">
        <property type="entry name" value="AMP-dep_Synth/Lig"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR042099">
        <property type="entry name" value="ANL_N_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00501">
        <property type="entry name" value="AMP-binding"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13193">
        <property type="entry name" value="AMP-binding_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00455">
        <property type="entry name" value="AMP_BINDING"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-0436">Ligase</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="AMP-binding" evidence="1">
        <location>
            <begin position="11"/>
            <end position="405"/>
        </location>
    </feature>
    <feature type="domain" description="AMP-binding_C" evidence="2">
        <location>
            <begin position="414"/>
            <end position="489"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF00501"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF13193"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ABX32832.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="503" mass="53516" checksum="85C8B58331DFD451" modified="2008-01-15" version="1">MNQRIHHLLDRWLAEAPQRPFIHLPDGSSLSFADLGALADTAEAELRALQVRPGDRVLVVAENCPEHAALILACSRVGAWSCGVNARMAPGEIDAFAAKADARVVYFTSAASDSASGHARRFGAGDSALAGMQHSPVRAQAVAESGALQDEVAALIFTSGTTGTPKGVMVGHDALTLFARVSAASRGLGPQDRSYAFVPMTHIFGLGTVLLASLHAGAQMVMRPQFDPADLLGALARHGISQLQGPPALYARLLAYLQEQGIAHPQAPALRYVYTGAGPLDLTLKKRVEAAFGRALHHGYGLSEYAGSVHLTRQGEQRPDTSAGYVVEGAEVRAVDPATGRSLPVGERGELWIRGRGLMHGYFRDDQATAAVMREGGWYASGDLGELHADGALFVVGRLKEMIIRSGFNVYPAEVELALNELPGVQRSAVVGRPEGDGNEEVIAFVELQPGATLDSAAARSHLRERLAPYKLPARIVPLSELPTSPNGKVLKRLLQEQALRVS</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-01-19" version="42" xmlns="http://uniprot.org/uniprot">
    <accession>A9BPY4</accession>
    <name>A9BPY4_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_0553</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX33199.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_0553"/>
    <dbReference type="EnsemblBacteria" id="ABX33199">
        <property type="protein sequence ID" value="ABX33199"/>
        <property type="gene ID" value="Daci_0553"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_0553"/>
    <dbReference type="eggNOG" id="COG4314">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_147247_0_0_4"/>
    <dbReference type="OMA" id="QMEQPEL"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="24"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="1"/>
            <end position="19"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX33199.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="148" mass="15845" checksum="CBF63079824D2980" modified="2008-01-15" version="1">MTTACSSTDLQTTTRPTLQAAPKAARAATALPHAPCLDDEEMKDSQLQGEWTGTVEGQSQPVRLQLGPHPQWKGNVKGTIARGADTRPMVGDVADDHITLEESADGKRITATWLGDVVEGSCAREIRGNFIEGDDAAPRPFVLRKLAP</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-01-19" version="69" xmlns="http://uniprot.org/uniprot">
    <accession>A9BQ34</accession>
    <name>A9BQ34_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="8">OmpA/MotB domain protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="8" type="ordered locus">Daci_0603</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="9" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the MotB family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX33249.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012202535.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_0603"/>
    <dbReference type="EnsemblBacteria" id="ABX33249">
        <property type="protein sequence ID" value="ABX33249"/>
        <property type="gene ID" value="Daci_0603"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_0603"/>
    <dbReference type="eggNOG" id="COG1360">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_016890_3_1_4"/>
    <dbReference type="OMA" id="DEKNRPM"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd07185">
        <property type="entry name" value="OmpA_C-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.1330.60">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025713">
        <property type="entry name" value="MotB_N_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006665">
        <property type="entry name" value="OmpA-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036737">
        <property type="entry name" value="OmpA-like_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13677">
        <property type="entry name" value="MotB_plug"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00691">
        <property type="entry name" value="OmpA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF103088">
        <property type="entry name" value="SSF103088"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51123">
        <property type="entry name" value="OMPA_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="4 6" id="KW-0472">Membrane</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="6" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="3 6" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="28"/>
            <end position="47"/>
        </location>
    </feature>
    <feature type="domain" description="OmpA-like" evidence="7">
        <location>
            <begin position="160"/>
            <end position="280"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="5">
        <location>
            <begin position="85"/>
            <end position="120"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="5">
        <location>
            <begin position="285"/>
            <end position="345"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="5">
        <location>
            <begin position="307"/>
            <end position="325"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00008914"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00473"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="PROSITE" id="PS51123"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="ABX33249.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="345" mass="36259" checksum="366709EFB4A5CE81" modified="2008-01-15" version="1">MAEKKLQPIIIKRVKKTAHAPHGGAWKIAYADFVTAMMAFFLLMWLLGSTAKGELQGIAAYFSSPLKVAMAGGDGAGNSSSVIPGGGNDLAKVHGQVRRSEAADSSNRRTSVDAGRADQAQVDSNRIKALKAKVDAMITSNARLNEFRSQIRTDVTPDGLQIQIVDEQNRPMFDSGSAMVKPYMRDILREVGAALAGAENRISLSGHTDAAPYGNADRGYSNWELSSDRANASRRELVAAGMPLNQLARITGLASSDLLLPDDPRAPQNRRITITVLTQEAEKRLLGHRGPVTRNALPPSLAGGNGGTANAAATESATGETAAQPAATSPAAAPSAPASPDRVTN</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="75" xmlns="http://uniprot.org/uniprot">
    <accession>A9BQ59</accession>
    <name>A9BQ59_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="4">Flagellar basal-body rod protein FlgF</fullName>
        </recommendedName>
        <alternativeName>
            <fullName evidence="4">Distal rod protein</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="4">Flagellar basal-body rod protein FlgG</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="7" type="ordered locus">Daci_0628</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="8" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="subunit">
        <text evidence="4">The basal body constitutes a major portion of the flagellar organelle and consists of five rings (E,L,P,S, and M) mounted on a central rod. The rod consists of about 26 subunits of FlgG in the distal portion, and FlgB, FlgC and FlgF are thought to build up the proximal portion of the rod with about 6 subunits each.</text>
    </comment>
    <comment type="subunit">
        <text evidence="4">The basal body constitutes a major portion of the flagellar organelle and consists of four rings (L,P,S, and M) mounted on a central rod. The rod consists of about 26 subunits of FlgG in the distal portion, and FlgB, FlgC and FlgF are thought to build up the proximal portion of the rod with about 6 subunits each.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1 4">Bacterial flagellum basal body</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2 4">Belongs to the flagella basal body rod proteins family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX33274.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012202560.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_0628"/>
    <dbReference type="PRIDE" id="A9BQ59"/>
    <dbReference type="EnsemblBacteria" id="ABX33274">
        <property type="protein sequence ID" value="ABX33274"/>
        <property type="gene ID" value="Daci_0628"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_0628"/>
    <dbReference type="eggNOG" id="COG4786">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_013687_0_1_4"/>
    <dbReference type="OMA" id="TRDGTFH"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009426">
        <property type="term" value="C:bacterial-type flagellum basal body, distal rod"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0071973">
        <property type="term" value="P:bacterial-type flagellum-dependent cell motility"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001444">
        <property type="entry name" value="Flag_bb_rod_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020013">
        <property type="entry name" value="Flagellar_FlgE/F/G"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010930">
        <property type="entry name" value="Flg_bb/hook_C_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037925">
        <property type="entry name" value="FlgE/F/G-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012836">
        <property type="entry name" value="FlgF"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012834">
        <property type="entry name" value="FlgG_G_neg"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00460">
        <property type="entry name" value="Flg_bb_rod"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF06429">
        <property type="entry name" value="Flg_bbr_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF117143">
        <property type="entry name" value="SSF117143"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR03506">
        <property type="entry name" value="FlgEFG_subfam"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR02490">
        <property type="entry name" value="flgF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR02488">
        <property type="entry name" value="flgG_G_neg"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3 4" id="KW-0975">Bacterial flagellum</keyword>
    <keyword evidence="7" id="KW-0966">Cell projection</keyword>
    <keyword evidence="7" id="KW-0969">Cilium</keyword>
    <keyword evidence="7" id="KW-0282">Flagellum</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Flg_bb_rod" evidence="5">
        <location>
            <begin position="10"/>
            <end position="35"/>
        </location>
    </feature>
    <feature type="domain" description="Flg_bbr_C" evidence="6">
        <location>
            <begin position="182"/>
            <end position="260"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004117"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00009677"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023143"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="RuleBase" id="RU362116"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="Pfam" id="PF00460"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="Pfam" id="PF06429"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="ABX33274.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="260" mass="27540" checksum="C431E516B514FB07" modified="2008-01-15" version="1">MINSLFISKTGMEAQQTQLDVISHNLANVSTTGYKRASAVFEDLIYQNLRQSGAQTTEQNQLPTGLHLGLGVRTVATSRNFLQGALQQSNNALDVAIDGNGFFQVNMPDGTTAYTRDGSFQVDAQGQLVTASGMPIANGVTIPQGATKVSISPEGVVSVTMAGQAAPQQVGNIAMSQFINPAGLEPRGQNLFTETASSGQPQQGQPGVNGMGMIKQGYLEGSNVNVVQELVTMIQTQRAYEMNSKAIQTSDQMLAKLAQL</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="71" xmlns="http://uniprot.org/uniprot">
    <accession>A9BQ63</accession>
    <name>A9BQ63_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="3 6">Flagellar basal-body rod protein FlgC</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="9" type="ordered locus">Daci_0632</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="9 10" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="10" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="subunit">
        <text evidence="5 6">The basal body constitutes a major portion of the flagellar organelle and consists of four rings (L,P,S, and M) mounted on a central rod. The rod consists of about 26 subunits of FlgG in the distal portion, and FlgB, FlgC and FlgF are thought to build up the proximal portion of the rod with about 6 subunits each.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1 6">Bacterial flagellum basal body</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the flagella basal body rod proteins family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX33278.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012202564.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_0632"/>
    <dbReference type="PRIDE" id="A9BQ63"/>
    <dbReference type="EnsemblBacteria" id="ABX33278">
        <property type="protein sequence ID" value="ABX33278"/>
        <property type="gene ID" value="Daci_0632"/>
    </dbReference>
    <dbReference type="GeneID" id="60690973"/>
    <dbReference type="KEGG" id="dac:Daci_0632"/>
    <dbReference type="eggNOG" id="COG1558">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_123272_1_0_4"/>
    <dbReference type="OMA" id="YVAYPNI"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030694">
        <property type="term" value="C:bacterial-type flagellum basal body, rod"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0071973">
        <property type="term" value="P:bacterial-type flagellum-dependent cell motility"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001444">
        <property type="entry name" value="Flag_bb_rod_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010930">
        <property type="entry name" value="Flg_bb/hook_C_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006299">
        <property type="entry name" value="FlgC"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00460">
        <property type="entry name" value="Flg_bb_rod"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF06429">
        <property type="entry name" value="Flg_bbr_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01395">
        <property type="entry name" value="FlgC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4 6" id="KW-0975">Bacterial flagellum</keyword>
    <keyword evidence="9" id="KW-0966">Cell projection</keyword>
    <keyword evidence="9" id="KW-0969">Cilium</keyword>
    <keyword evidence="9" id="KW-0282">Flagellum</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Flg_bb_rod" evidence="7">
        <location>
            <begin position="8"/>
            <end position="37"/>
        </location>
    </feature>
    <feature type="domain" description="Flg_bbr_C" evidence="8">
        <location>
            <begin position="87"/>
            <end position="132"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004117"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00009677"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00017941"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023143"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00025933"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="RuleBase" id="RU362062"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="Pfam" id="PF00460"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="Pfam" id="PF06429"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="ABX33278.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="134" mass="14260" checksum="6B241925731111FC" modified="2008-01-15" version="1">MSMFSIFSISGSAVSAQSQRLNVVASNLANVDAVAGPDGKAYQARQVVFQTVAMGEEGSSGVRVSAISQDNTPGRRIHDPQHPLADAEGYVTHSNVSAVDEMVNMISASRSYQNNVEVMNTTKSLLLKTLQMGQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="76" xmlns="http://uniprot.org/uniprot">
    <accession>A9BQC4</accession>
    <name>A9BQC4_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="6">Ferritin Dps family protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ordered locus">Daci_0888</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="7" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="subunit">
        <text evidence="2">Oligomer of 24 subunits, arranged as 12 dimers, that are packed together to form an approximately spherical molecule with a central cavity, in which large amounts of iron can be deposited.</text>
    </comment>
    <comment type="similarity">
        <text evidence="1">Belongs to the bacterioferritin family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX33534.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_0888"/>
    <dbReference type="PRIDE" id="A9BQC4"/>
    <dbReference type="EnsemblBacteria" id="ABX33534">
        <property type="protein sequence ID" value="ABX33534"/>
        <property type="gene ID" value="Daci_0888"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_0888"/>
    <dbReference type="eggNOG" id="COG2193">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_104506_4_1_4"/>
    <dbReference type="OMA" id="CTLRYKR"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008199">
        <property type="term" value="F:ferric iron binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006879">
        <property type="term" value="P:cellular iron ion homeostasis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006826">
        <property type="term" value="P:iron ion transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.1260.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002024">
        <property type="entry name" value="Bacterioferritin"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012347">
        <property type="entry name" value="Ferritin-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009040">
        <property type="entry name" value="Ferritin-like_diiron"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009078">
        <property type="entry name" value="Ferritin-like_SF"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008331">
        <property type="entry name" value="Ferritin_DPS_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00210">
        <property type="entry name" value="Ferritin"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00601">
        <property type="entry name" value="BACFERRITIN"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47240">
        <property type="entry name" value="SSF47240"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50905">
        <property type="entry name" value="FERRITIN_LIKE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-0349">Heme</keyword>
    <keyword evidence="3" id="KW-0408">Iron</keyword>
    <keyword evidence="3" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Ferritin-like diiron" evidence="5">
        <location>
            <begin position="49"/>
            <end position="194"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="4">
        <location>
            <begin position="1"/>
            <end position="24"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="4">
        <location>
            <begin position="1"/>
            <end position="20"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00008093"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00011713"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022617"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="PROSITE" id="PS50905"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="ABX33534.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="194" mass="21711" checksum="D517FCFB0CF5C27A" modified="2008-01-15" version="1">MKRPRMNPNSTPTKQAKSNAGNGHLALDPKALEAAKHSLDDGAVTPHFGPWREDIIKLLNDSLATELVCVMRYKRHHFTAVGLASPAIADEFLVHANEEMAHADKLAQRIVQLGGEPDFNPQTLTQRSHADYNGETDLKAMIRTNLIAERVAIEAYSQMIDLIGDKDPTTRRLIESILEQEQEHADELSDWLEK</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="57" xmlns="http://uniprot.org/uniprot">
    <accession>A9BQF1</accession>
    <name>A9BQF1_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Extradiol ring-cleavage dioxygenase LigAB LigA subunit</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_0915</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX33561.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012202847.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_0915"/>
    <dbReference type="PRIDE" id="A9BQF1"/>
    <dbReference type="EnsemblBacteria" id="ABX33561">
        <property type="protein sequence ID" value="ABX33561"/>
        <property type="gene ID" value="Daci_0915"/>
    </dbReference>
    <dbReference type="GeneID" id="60685479"/>
    <dbReference type="KEGG" id="dac:Daci_0915"/>
    <dbReference type="eggNOG" id="COG3384">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_157261_0_0_4"/>
    <dbReference type="OMA" id="YALNKMC"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051213">
        <property type="term" value="F:dioxygenase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.700.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036622">
        <property type="entry name" value="LigA_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011986">
        <property type="entry name" value="Xdiol_dOase_LigA"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07746">
        <property type="entry name" value="LigA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48076">
        <property type="entry name" value="SSF48076"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0223">Dioxygenase</keyword>
    <keyword evidence="2" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="LigA" evidence="1">
        <location>
            <begin position="24"/>
            <end position="109"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF07746"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX33561.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="113" mass="12496" checksum="E8B1D1874217294F" modified="2008-01-15" version="1">MADQPQIPGTTLFDGRQARKGYALNSMCFSFNELANRQAFLADEEAYMRSYGLNQEQADAVRARNVLQMIAAGGNAYYLAKLAGIFHLDMQDIGAQQTGMTKAEFQALLRSHA</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2021-09-29" version="56" xmlns="http://uniprot.org/uniprot">
    <accession>A9BQG0</accession>
    <name>A9BQG0_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Rhodanese domain protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Daci_0924</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="4" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX33570.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012202856.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_0924"/>
    <dbReference type="EnsemblBacteria" id="ABX33570">
        <property type="protein sequence ID" value="ABX33570"/>
        <property type="gene ID" value="Daci_0924"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_0924"/>
    <dbReference type="eggNOG" id="COG0607">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_107126_1_0_4"/>
    <dbReference type="OMA" id="PRWDLER"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.250.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR021309">
        <property type="entry name" value="DUF2892"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001763">
        <property type="entry name" value="Rhodanese-like_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036873">
        <property type="entry name" value="Rhodanese-like_dom_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF11127">
        <property type="entry name" value="DUF2892"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00581">
        <property type="entry name" value="Rhodanese"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00450">
        <property type="entry name" value="RHOD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52821">
        <property type="entry name" value="SSF52821"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50206">
        <property type="entry name" value="RHODANESE_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="116"/>
            <end position="134"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="140"/>
            <end position="164"/>
        </location>
    </feature>
    <feature type="domain" description="Rhodanese" evidence="2">
        <location>
            <begin position="15"/>
            <end position="104"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS50206"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ABX33570.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="176" mass="18340" checksum="44F22C0D1A8C864A" modified="2008-01-15" version="1">MSLSSVSSQAARQMQEQGAWLIDIRAPDEHARERIGGARSMPMDRLAAGALAGAPAAVVFHCRSGHRTRLNAQALAAALPPGCAGHVLDGGLDAWKAQGLPVLRDSRQPLELQRQVQLGAGGLALLGAVLGATVSPWWHLLSGFVGCGLIVAGATGFCGLARVLMKAPWNRRALGQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2020-02-26" version="29" xmlns="http://uniprot.org/uniprot">
    <accession>A9BQI3</accession>
    <name>A9BQI3_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_0947</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX33593.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="ABX33593">
        <property type="protein sequence ID" value="ABX33593"/>
        <property type="gene ID" value="Daci_0947"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_0947"/>
    <dbReference type="HOGENOM" id="CLU_3151972_0_0_4"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="20"/>
            <end position="47"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX33593.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="48" mass="4819" checksum="4EF912A9F31EAA91" modified="2008-01-15" version="1">MLVLGLARTNAQEEGELVRFGFALACLNAAAVALAALAALVMAGLGVF</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-05-25" version="64" xmlns="http://uniprot.org/uniprot">
    <accession>A9BQM3</accession>
    <name>A9BQM3_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="7">Inner-membrane translocator</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ordered locus">Daci_0078</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="8" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX32725.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012202018.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_0078"/>
    <dbReference type="EnsemblBacteria" id="ABX32725">
        <property type="protein sequence ID" value="ABX32725"/>
        <property type="gene ID" value="Daci_0078"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_0078"/>
    <dbReference type="eggNOG" id="COG0559">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_039929_2_1_4"/>
    <dbReference type="OMA" id="QQVLMTY"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0022857">
        <property type="term" value="F:transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001851">
        <property type="entry name" value="ABC_transp_permease"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02653">
        <property type="entry name" value="BPD_transp_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="5 6" id="KW-0472">Membrane</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 6" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="4 6" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="16"/>
            <end position="37"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="66"/>
            <end position="86"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="143"/>
            <end position="163"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="192"/>
            <end position="213"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="225"/>
            <end position="253"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="260"/>
            <end position="280"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="ABX32725.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="290" mass="31201" checksum="96FB615304375B57" modified="2008-01-15" version="1">MDLATFLVQCLNAVQYGLLLFLLASGLTLIFGIMGVINLAHGSFYMIGAYMAFALSPLLGQHFITMLLAGVALTVVLGYALEWAFFSYLYEREHLQQVLMTFGLILVFEELRSLLAGNDVHGVPLPGWLSGSFSLGGLMSYPWYRLFASGVCLLVALALYWVVNRTRLGMMVRAGASNRDMVRGLGIDVKRLYRIVFAIGVALAALAGMIAAPMSSVYPGMGGNVLIICFVVVVIGGIGSITGALLASLLVGFVDTFGKLFFQELSGMSVYLLMAVVLVGRPQGLMGQRS</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="73" xmlns="http://uniprot.org/uniprot">
    <accession>A9BQN7</accession>
    <name>A9BQN7_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">Septum site-determining protein MinD</fullName>
        </recommendedName>
        <alternativeName>
            <fullName evidence="7">Cell division inhibitor MinD</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="9" type="ordered locus">Daci_0092</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="9 10" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="10" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="6">ATPase required for the correct placement of the division site. Cell division inhibitors MinC and MinD act in concert to form an inhibitor capable of blocking formation of the polar Z ring septums. Rapidly oscillates between the poles of the cell to destabilize FtsZ filaments that have formed before they mature into polar Z rings.</text>
    </comment>
    <comment type="subunit">
        <text evidence="2">Interacts with MinC and FtsZ.</text>
    </comment>
    <comment type="similarity">
        <text evidence="1">Belongs to the ParA family. MinD subfamily.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX32739.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012202032.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_0092"/>
    <dbReference type="PRIDE" id="A9BQN7"/>
    <dbReference type="EnsemblBacteria" id="ABX32739">
        <property type="protein sequence ID" value="ABX32739"/>
        <property type="gene ID" value="Daci_0092"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_0092"/>
    <dbReference type="eggNOG" id="COG2894">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_037612_0_1_4"/>
    <dbReference type="OMA" id="CESAKAY"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016887">
        <property type="term" value="F:ATP hydrolysis activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002586">
        <property type="entry name" value="CobQ/CobB/MinD/ParA_Nub-bd_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010223">
        <property type="entry name" value="MinD"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025501">
        <property type="entry name" value="MinD_FleN"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01656">
        <property type="entry name" value="CbiA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF003092">
        <property type="entry name" value="MinD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01968">
        <property type="entry name" value="minD_bact"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="4" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="CbiA" evidence="8">
        <location>
            <begin position="5"/>
            <end position="225"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00010257"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00011626"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00016887"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00025436"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00032845"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="Pfam" id="PF01656"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="ABX32739.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="270" mass="29315" checksum="371BC4227FFADBA9" modified="2008-01-15" version="1">MAKIVVVTSGKGGVGKTTTSASFASGLALRGHKTAVIDFDVGLRNLDLIMGCERRVVYDLINVIQGEANLNQALIKDKQCDNLFVLAASQTRDKDALTQDGVKKILDDLAGMDFEYIICDSPAGIESGALIAMHFADEALVVTNPEVSSVRDSDRILGMLSSKTARAIAGESVKEHLLITRYNPNRVQDGQMLSLEDIQDILRIELIGVVPESETVLQASNQGIPAVHMQGSDVAEAYQDVVARFLGEEKPMRFTEAQKPGFFKRMFGGR</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-01-19" version="59" xmlns="http://uniprot.org/uniprot">
    <accession>A9BQS0</accession>
    <name>A9BQS0_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_0126</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX32772.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012202065.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_0126"/>
    <dbReference type="EnsemblBacteria" id="ABX32772">
        <property type="protein sequence ID" value="ABX32772"/>
        <property type="gene ID" value="Daci_0126"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_0126"/>
    <dbReference type="eggNOG" id="COG0577">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_000604_8_9_4"/>
    <dbReference type="OMA" id="YATLMAM"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="20"/>
            <end position="48"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="255"/>
            <end position="279"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="318"/>
            <end position="338"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="345"/>
            <end position="365"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX32772.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="384" mass="40335" checksum="23AC061B2EF8E471" modified="2008-01-15" version="1">MIALARKTLVHEWRRFIPSVFAVGFSGVLLAMQAALVLGIFGSAALYVTASSADLWIGYPGTQSVNFGRTIGRDVDMRLRMDPDVAAVEPYVWVDGDWRSDSAAGGAASEHGGGVSVYLSGIATDDASMLFSHVLQPWQRQRLRETGAVIVDRADLQTLGTSEGGVAWVNNHRVQVVAAVDGLRGLGGVNVLASLATAREIAGDPGQGSTYFVARVRPGASAKAVKQRLNQPTPSFGPYEAWTAREFARRSQRYWMFDTGAGAGVLFMAVIVCLVGSVVTSQSLKAVVAASSREYAVLNALGVSRAALGRVVVEQACWIGGLGFVMAALASAVLLALAMAYRVPVALNASAVLACAVLVAVLSLLSGLGAMRSLLRADPATLLR</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="84" xmlns="http://uniprot.org/uniprot">
    <accession>A9BRN1</accession>
    <name>A9BRN1_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="6">L-aspartate dehydrogenase</fullName>
            <ecNumber evidence="6">1.4.1.21</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="6" type="primary">nadX</name>
        <name evidence="9" type="ordered locus">Daci_0952</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="9 10" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="10" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="6">Specifically catalyzes the NAD or NADP-dependent dehydrogenation of L-aspartate to iminoaspartate.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="6">
            <text>H2O + L-aspartate + NAD(+) = H(+) + NADH + NH4(+) + oxaloacetate</text>
            <dbReference type="Rhea" id="RHEA:11788"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:16452"/>
            <dbReference type="ChEBI" id="CHEBI:28938"/>
            <dbReference type="ChEBI" id="CHEBI:29991"/>
            <dbReference type="ChEBI" id="CHEBI:57540"/>
            <dbReference type="ChEBI" id="CHEBI:57945"/>
            <dbReference type="EC" id="1.4.1.21"/>
        </reaction>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="6">
            <text>H2O + L-aspartate + NADP(+) = H(+) + NADPH + NH4(+) + oxaloacetate</text>
            <dbReference type="Rhea" id="RHEA:11784"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:16452"/>
            <dbReference type="ChEBI" id="CHEBI:28938"/>
            <dbReference type="ChEBI" id="CHEBI:29991"/>
            <dbReference type="ChEBI" id="CHEBI:57783"/>
            <dbReference type="ChEBI" id="CHEBI:58349"/>
            <dbReference type="EC" id="1.4.1.21"/>
        </reaction>
    </comment>
    <comment type="pathway">
        <text evidence="6">Cofactor biosynthesis; NAD(+) biosynthesis; iminoaspartate from L-aspartate (dehydrogenase route): step 1/1.</text>
    </comment>
    <comment type="miscellaneous">
        <text evidence="6">The iminoaspartate product is unstable in aqueous solution and can decompose to oxaloacetate and ammonia.</text>
    </comment>
    <comment type="similarity">
        <text evidence="1 6">Belongs to the L-aspartate dehydrogenase family.</text>
    </comment>
    <dbReference type="EC" id="1.4.1.21" evidence="6"/>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX33598.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_0952"/>
    <dbReference type="PRIDE" id="A9BRN1"/>
    <dbReference type="EnsemblBacteria" id="ABX33598">
        <property type="protein sequence ID" value="ABX33598"/>
        <property type="gene ID" value="Daci_0952"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_0952"/>
    <dbReference type="eggNOG" id="COG1712">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_089550_0_0_4"/>
    <dbReference type="OMA" id="ECAGHSA"/>
    <dbReference type="UniPathway" id="UPA00253">
        <property type="reaction ID" value="UER00456"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0033735">
        <property type="term" value="F:aspartate dehydrogenase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051287">
        <property type="term" value="F:NAD binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0050661">
        <property type="term" value="F:NADP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016639">
        <property type="term" value="F:oxidoreductase activity, acting on the CH-NH2 group of donors, NAD or NADP as acceptor"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009435">
        <property type="term" value="P:NAD biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01265">
        <property type="entry name" value="NadX"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005106">
        <property type="entry name" value="Asp/hSer_DH_NAD-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002811">
        <property type="entry name" value="Asp_DH"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020626">
        <property type="entry name" value="Asp_DH_prok"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011182">
        <property type="entry name" value="L-Asp_DH"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036291">
        <property type="entry name" value="NAD(P)-bd_dom_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01958">
        <property type="entry name" value="DUF108"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03447">
        <property type="entry name" value="NAD_binding_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF005227">
        <property type="entry name" value="Asp_dh_NAD_syn"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51735">
        <property type="entry name" value="SSF51735"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5 6" id="KW-0520">NAD</keyword>
    <keyword evidence="3 6" id="KW-0521">NADP</keyword>
    <keyword evidence="4 6 9" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="2 6" id="KW-0662">Pyridine nucleotide biosynthesis</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="NAD_binding_3" evidence="8">
        <location>
            <begin position="9"/>
            <end position="119"/>
        </location>
    </feature>
    <feature type="domain" description="DUF108" evidence="7">
        <location>
            <begin position="168"/>
            <end position="255"/>
        </location>
    </feature>
    <feature type="active site" evidence="6">
        <location>
            <position position="220"/>
        </location>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <position position="124"/>
        </location>
        <ligand>
            <name>NAD(+)</name>
            <dbReference type="ChEBI" id="CHEBI:57540"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <position position="190"/>
        </location>
        <ligand>
            <name>NAD(+)</name>
            <dbReference type="ChEBI" id="CHEBI:57540"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00008331"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022642"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022857"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023002"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023027"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01265"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="Pfam" id="PF01958"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="Pfam" id="PF03447"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="ABX33598.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="267" mass="27448" checksum="79AA4538FDD2F958" modified="2008-01-15" version="1">MTMNIAVIGCGAIGASVLELLKGHAAVQVGWVLVPEVTDAVRATLARHAPQARALPALTIEDRPDLIVECAGHTAIEEHVLPALRRGIPAVVASIGALSAPGMAEAVQAAAEAGGTQVQLLSGAIGGVDALAAARIGGLDEVVYTGRKPPLAWTGTPAEQRCDLASLKEAFCIFEGSAREAAQLYPKNANVAATLSLAGMGLDRTTVRLYADPAVDENVHHVAARGAFGSMELTMRGKPLEANPKTSALTVYSVVRAVLNQATAIAI</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2021-09-29" version="52" xmlns="http://uniprot.org/uniprot">
    <accession>A9BRP9</accession>
    <name>A9BRP9_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ordered locus">Daci_0970</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="5" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Periplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the UPF0065 (bug) family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX33616.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012202902.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_0970"/>
    <dbReference type="EnsemblBacteria" id="ABX33616">
        <property type="protein sequence ID" value="ABX33616"/>
        <property type="gene ID" value="Daci_0970"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_0970"/>
    <dbReference type="eggNOG" id="COG3181">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_045683_0_0_4"/>
    <dbReference type="OMA" id="SHYGCVL"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0042597">
        <property type="term" value="C:periplasmic space"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.190.150">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005064">
        <property type="entry name" value="BUG"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR042100">
        <property type="entry name" value="Bug_dom1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR42928">
        <property type="entry name" value="PTHR42928"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03401">
        <property type="entry name" value="TctC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF017082">
        <property type="entry name" value="YflP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="3">
        <location>
            <begin position="1"/>
            <end position="32"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5002735728" evidence="3">
        <location>
            <begin position="33"/>
            <end position="337"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004418"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00006987"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="ABX33616.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="337" mass="34647" checksum="9BAF14DC07C41692" modified="2008-01-15" version="1">MQLRPALPLSLVSAFPVLSIVCAMAWSQGALAQAGAAFPARPVTLVVPFPPGGPSDALARAVAQKMGEHLGQPLVIENLGGANGTIGLNQARKAAADGYTLSFGGIGTHVVNVALYRKLPYDPVADFAPVGPAGAAPMLLLARANLPASDLRQFAEWLKRNQAAASYGSAGVGSISHYGCVLLLSALGQSPTHVPYRGIAPAMNDLMGGQTDFMCDQTTTALPQIAGGRIKAIAVLGTQRLAQLPGTAASAEAGHPLQARSWNAIFAPRGTPPAVLARLTRSLQHAMGDAGLRAQMAALGVELPSPEQAVPATVSALIEQGLRNDVPALKAKGQYLD</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2020-10-07" version="41" xmlns="http://uniprot.org/uniprot">
    <accession>A9BRY1</accession>
    <name>A9BRY1_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_0745</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX33391.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="ABX33391">
        <property type="protein sequence ID" value="ABX33391"/>
        <property type="gene ID" value="Daci_0745"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_0745"/>
    <dbReference type="eggNOG" id="ENOG50318D1">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_117169_0_0_4"/>
    <dbReference type="OMA" id="WENGFLE"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="20"/>
            <end position="38"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="50"/>
            <end position="71"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="91"/>
            <end position="112"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="132"/>
            <end position="154"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="174"/>
            <end position="191"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX33391.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="197" mass="22362" checksum="B30742E8A012671A" modified="2008-01-15" version="1">MSFPLSFVLPQSLSWENGFLENIQAVTLLLGMVAALVAARRQKGSLAAPLWWIASLFWLAFLGRELAWGAAFLPSLEAGKWGPVISSQALWYRPAVKWVVGAMLLLCCYWFVRHGVWNKVIKRLVRENALPIFSLAIFVAAMVISTNAEGHGFIVLQQWFDYQVIVLEELVETFGYMALWLAQWALVRYVAGWREDI</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="87" xmlns="http://uniprot.org/uniprot">
    <accession>A9BRY3</accession>
    <name>A9BRY3_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">Histidine kinase</fullName>
            <ecNumber evidence="2">2.7.13.3</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="9" type="ordered locus">Daci_0747</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="9 10" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="10" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>ATP + protein L-histidine = ADP + protein N-phospho-L-histidine.</text>
            <dbReference type="EC" id="2.7.13.3"/>
        </reaction>
    </comment>
    <dbReference type="EC" id="2.7.13.3" evidence="2"/>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX33393.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012202679.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_0747"/>
    <dbReference type="PRIDE" id="A9BRY3"/>
    <dbReference type="EnsemblBacteria" id="ABX33393">
        <property type="protein sequence ID" value="ABX33393"/>
        <property type="gene ID" value="Daci_0747"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_0747"/>
    <dbReference type="eggNOG" id="COG2205">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_000445_89_37_4"/>
    <dbReference type="OMA" id="QMESIRH"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000155">
        <property type="term" value="F:phosphorelay sensor kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd00082">
        <property type="entry name" value="HisKA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.565.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003660">
        <property type="entry name" value="HAMP_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003594">
        <property type="entry name" value="HATPase_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036890">
        <property type="entry name" value="HATPase_C_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005467">
        <property type="entry name" value="His_kinase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003661">
        <property type="entry name" value="HisK_dim/P"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036097">
        <property type="entry name" value="HisK_dim/P_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004358">
        <property type="entry name" value="Sig_transdc_His_kin-like_C"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00672">
        <property type="entry name" value="HAMP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02518">
        <property type="entry name" value="HATPase_c"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00512">
        <property type="entry name" value="HisKA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00344">
        <property type="entry name" value="BCTRLSENSOR"/>
    </dbReference>
    <dbReference type="SMART" id="SM00304">
        <property type="entry name" value="HAMP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00387">
        <property type="entry name" value="HATPase_c"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00388">
        <property type="entry name" value="HisKA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47384">
        <property type="entry name" value="SSF47384"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55874">
        <property type="entry name" value="SSF55874"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50885">
        <property type="entry name" value="HAMP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50109">
        <property type="entry name" value="HIS_KIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="5 9" id="KW-0418">Kinase</keyword>
    <keyword evidence="6" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-0597">Phosphoprotein</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4" id="KW-0808">Transferase</keyword>
    <keyword evidence="6" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="6" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="16"/>
            <end position="39"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="171"/>
            <end position="190"/>
        </location>
    </feature>
    <feature type="domain" description="HAMP" evidence="8">
        <location>
            <begin position="196"/>
            <end position="249"/>
        </location>
    </feature>
    <feature type="domain" description="Histidine kinase" evidence="7">
        <location>
            <begin position="257"/>
            <end position="443"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00000085"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00012438"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022553"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022777"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="PROSITE" id="PS50109"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="PROSITE" id="PS50885"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="ABX33393.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="471" mass="52289" checksum="8EEC07343792476A" modified="2008-01-15" version="1">MRFANLCWPGSLRSRLLAVYGLSMVFSALLVGALVILVAKPFDSYALQRGMGHAAEKLAEWVSFDARGVPQGFSERELKAWMLTSLGEEMQLRITDARGRVVFAPNGEMQPLTQTGQGFDPELKAFAYERGGVVMRAGTATLVHDGTTWHVQIAVSDRMVDWLCESVGLPALWRGMVAIGVVFLVVFLFSTHRTLQRMLRPLGVAAQDAQRITPQTLGTRLQPKDLPREFAPLVEAFNHVLDRLQAGFRNQQEFLSMAAHELKTPLALMRVQIELEPEDRRSPELLKDVDHMARQVQQLLHLAEVCEHQRYRMEDIAPADIIGEVCDFMARASEKCGVHIHCEVKDDAPAWRADRGALFVLLKNLIENAVQHSPQGATVTVKACGLGFSVLDQGRGVPPEDLPRIFERFWRSSERRDLGAGLGLPICLEIARAHGWTLTALPGATGLEIQARFAGPVQEPAQPFNRPAMPS</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="102" xmlns="http://uniprot.org/uniprot">
    <accession>A9BS55</accession>
    <name>A9BS55_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="14">UvrABC system protein A</fullName>
            <shortName evidence="14">UvrA protein</shortName>
        </recommendedName>
        <alternativeName>
            <fullName evidence="14">Excinuclease ABC subunit A</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="14" type="primary">uvrA</name>
        <name evidence="18" type="ordered locus">Daci_0819</name>
    </gene>
    <organism evidence="18 19">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="18 19" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="19">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="19" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="19">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="14">The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 UvrA and 2 UvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by UvrB, the UvrA molecules dissociate.</text>
    </comment>
    <comment type="subunit">
        <text evidence="14">Forms a heterotetramer with UvrB during the search for lesions.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="14">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="14">Belongs to the ABC transporter superfamily. UvrA family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX33465.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012202751.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_0819"/>
    <dbReference type="PRIDE" id="A9BS55"/>
    <dbReference type="EnsemblBacteria" id="ABX33465">
        <property type="protein sequence ID" value="ABX33465"/>
        <property type="gene ID" value="Daci_0819"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_0819"/>
    <dbReference type="eggNOG" id="COG0178">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_001370_0_2_4"/>
    <dbReference type="OMA" id="PFEGIIP"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009380">
        <property type="term" value="C:excinuclease repair complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016887">
        <property type="term" value="F:ATP hydrolysis activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009381">
        <property type="term" value="F:excinuclease ABC activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008270">
        <property type="term" value="F:zinc ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006289">
        <property type="term" value="P:nucleotide-excision repair"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009432">
        <property type="term" value="P:SOS response"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.1490.20">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00205">
        <property type="entry name" value="UvrA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003439">
        <property type="entry name" value="ABC_transporter-like_ATP-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017871">
        <property type="entry name" value="ABC_transporter-like_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013815">
        <property type="entry name" value="ATP_grasp_subdomain_1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004602">
        <property type="entry name" value="UvrA"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041552">
        <property type="entry name" value="UvrA_DNA-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041102">
        <property type="entry name" value="UvrA_inter"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00005">
        <property type="entry name" value="ABC_tran"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF17755">
        <property type="entry name" value="UvrA_DNA-bind"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF17760">
        <property type="entry name" value="UvrA_inter"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00630">
        <property type="entry name" value="uvra"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00211">
        <property type="entry name" value="ABC_TRANSPORTER_1"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50893">
        <property type="entry name" value="ABC_TRANSPORTER_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="9 14 15" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="1 14" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="5 14" id="KW-0227">DNA damage</keyword>
    <keyword evidence="6 14" id="KW-0228">DNA excision</keyword>
    <keyword evidence="13 14" id="KW-0234">DNA repair</keyword>
    <keyword evidence="12 14" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="10 14" id="KW-0267">Excision nuclease</keyword>
    <keyword evidence="2 14" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="4 14 15" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="19" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 14" id="KW-0677">Repeat</keyword>
    <keyword evidence="14" id="KW-0742">SOS response</keyword>
    <keyword evidence="11" id="KW-1278">Translocase</keyword>
    <keyword evidence="8 14" id="KW-0862">Zinc</keyword>
    <keyword evidence="7 14" id="KW-0863">Zinc-finger</keyword>
    <feature type="domain" description="ABC transporter" evidence="17">
        <location>
            <begin position="689"/>
            <end position="1017"/>
        </location>
    </feature>
    <feature type="zinc finger region" description="C4-type" evidence="14">
        <location>
            <begin position="288"/>
            <end position="315"/>
        </location>
    </feature>
    <feature type="zinc finger region" description="C4-type" evidence="14">
        <location>
            <begin position="820"/>
            <end position="846"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="16">
        <location>
            <begin position="1"/>
            <end position="21"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="16">
        <location>
            <begin position="658"/>
            <end position="686"/>
        </location>
    </feature>
    <feature type="binding site" evidence="14">
        <location>
            <begin position="64"/>
            <end position="71"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="14 15">
        <location>
            <begin position="721"/>
            <end position="728"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022490"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022737"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022763"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022769"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022771"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00022833"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00022881"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="ARBA" id="ARBA00022967"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="12">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="13">
        <source>
            <dbReference type="ARBA" id="ARBA00023204"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="14">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00205"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="15">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00434"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="16">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="17">
        <source>
            <dbReference type="PROSITE" id="PS50893"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="18">
        <source>
            <dbReference type="EMBL" id="ABX33465.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="19">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="1037" mass="112478" checksum="871DE34E868A9B8C" modified="2008-01-15" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="75" xmlns="http://uniprot.org/uniprot">
    <accession>A9BSG3</accession>
    <name>A9BSG3_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Amidohydrolase</fullName>
            <ecNumber evidence="3">3.5.1.32</ecNumber>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Daci_1132</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="4" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EC" id="3.5.1.32" evidence="3"/>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX33777.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012203063.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_1132"/>
    <dbReference type="PRIDE" id="A9BSG3"/>
    <dbReference type="EnsemblBacteria" id="ABX33777">
        <property type="protein sequence ID" value="ABX33777"/>
        <property type="gene ID" value="Daci_1132"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_1132"/>
    <dbReference type="eggNOG" id="COG1473">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_023257_0_1_4"/>
    <dbReference type="OMA" id="QYPPLIN"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0047980">
        <property type="term" value="F:hippurate hydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017439">
        <property type="entry name" value="Amidohydrolase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036264">
        <property type="entry name" value="Bact_exopeptidase_dim_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002933">
        <property type="entry name" value="Peptidase_M20"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011650">
        <property type="entry name" value="Peptidase_M20_dimer"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11014">
        <property type="entry name" value="PTHR11014"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07687">
        <property type="entry name" value="M20_dimer"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01546">
        <property type="entry name" value="Peptidase_M20"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF005962">
        <property type="entry name" value="Pept_M20D_amidohydro"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55031">
        <property type="entry name" value="SSF55031"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01891">
        <property type="entry name" value="amidohydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1 3" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="M20_dimer" evidence="2">
        <location>
            <begin position="189"/>
            <end position="286"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF07687"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ABX33777.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="402" mass="43502" checksum="5715DC789FE2DF80" modified="2008-01-15" version="1">MALLQELLDRAPEITALRRDIHAHPELCFEEIRTADLVARQLEGWGIAVHRGLGRTGVVGTIHGRDGGASGRAVGLRADMDALPMQEFNTFEHASRHAGKMHACGHDGHVAMLLAAAQYLAAHRDSFDGTVHLIFQPAEEGGGGAREMVEDGLFTQFPMQAVFGMHNWPGMKAGTMAVGPGPAMASSNEFRIVVRGKGGHAAMPHMVIDPLPVAAQLILGLQTIVSRNVKPIEAGVVSVTMVHAGEATNVVPDSVELQGTVRTFTLEVLDLIERRMKTLAESICAAHDTRCEFEFVRNYPPTINSAPEAEFARRVMAEVVGEANVLPQEPSMGAEDFAFMLLEKPGAYCFIANGDGDHRAIGHGGGPCTLHNPSYDFNDQLIPQGATFWVRLAQRWLSEPTR</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="25" xmlns="http://uniprot.org/uniprot">
    <accession>A9BSY7</accession>
    <name>A9BSY7_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Daci_1704</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="2" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX34347.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="PRIDE" id="A9BSY7"/>
    <dbReference type="EnsemblBacteria" id="ABX34347">
        <property type="protein sequence ID" value="ABX34347"/>
        <property type="gene ID" value="Daci_1704"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_1704"/>
    <dbReference type="HOGENOM" id="CLU_2069235_0_0_4"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ABX34347.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="118" mass="12664" checksum="F389C5F2A6339BC7" modified="2008-01-15" version="1">MDGLIHTLYAFGLLHGPWAATSAGALAKCLSPGYAKAIAARGLVRLQAWSNEYPYAGEKLAPVVAAAAFIKVIVHPVTPQDRSIALGMYGSIFGRRELEQLKSRHAALGQKSLFEETL</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2021-06-02" version="52" xmlns="http://uniprot.org/uniprot">
    <accession>A9BT39</accession>
    <name>A9BT39_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ordered locus">Daci_1757</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="5" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Periplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the UPF0065 (bug) family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX34399.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012203684.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_1757"/>
    <dbReference type="EnsemblBacteria" id="ABX34399">
        <property type="protein sequence ID" value="ABX34399"/>
        <property type="gene ID" value="Daci_1757"/>
    </dbReference>
    <dbReference type="GeneID" id="60686183"/>
    <dbReference type="KEGG" id="dac:Daci_1757"/>
    <dbReference type="eggNOG" id="COG3181">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_045683_0_1_4"/>
    <dbReference type="OMA" id="DMMFATA"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0042597">
        <property type="term" value="C:periplasmic space"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.190.150">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005064">
        <property type="entry name" value="BUG"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR042100">
        <property type="entry name" value="Bug_dom1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR42928">
        <property type="entry name" value="PTHR42928"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03401">
        <property type="entry name" value="TctC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF017082">
        <property type="entry name" value="YflP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="3">
        <location>
            <begin position="1"/>
            <end position="28"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5002735070" evidence="3">
        <location>
            <begin position="29"/>
            <end position="325"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004418"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00006987"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="ABX34399.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="325" mass="33664" checksum="38873F7ED9ACED7E" modified="2008-01-15" version="1">MPSFAARRCARAIAFIAVLATVCSAASAAFPEKPVRLVVPFAPGGGTDLIARTLGAEMAKDLGQPVIVDNKPGAGTIIGTDNVAKSAPDGYSVVVASFAHAVNPALQAKLPYGSNKAFAPVILIGRGPNVLVVPAASPYKTVADVMAAAKASPDKLTYASQGAGTSAHLAGELFANLAKVRLTHVPYRGAGPALTDLMGGQVDMMFATAAAVSTFIDNGKLRVLGVTTAEPSAAFKNVPPIAVTVPGYRVESWYGLYAPAATPAAVIDRLNAAARKAARSPEFVRKLEHEGLMVNAGPAAELDTYVQAEEKRWAQIVKQNNIHPD</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="100" xmlns="http://uniprot.org/uniprot">
    <accession>A9BTI6</accession>
    <name>A9BTI6_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="14">ABC transporter related</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="14" type="ordered locus">Daci_2316</name>
    </gene>
    <organism evidence="14 15">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="14 15" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="15">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="15" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="15">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the ABC-4 integral membrane protein family. LolC/E subfamily.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX34954.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012204236.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_2316"/>
    <dbReference type="PRIDE" id="A9BTI6"/>
    <dbReference type="EnsemblBacteria" id="ABX34954">
        <property type="protein sequence ID" value="ABX34954"/>
        <property type="gene ID" value="Daci_2316"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_2316"/>
    <dbReference type="eggNOG" id="COG0577">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="eggNOG" id="COG1136">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_000604_78_1_4"/>
    <dbReference type="OMA" id="NEIGVRM"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046677">
        <property type="term" value="P:response to antibiotic"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd03255">
        <property type="entry name" value="ABC_MJ0796_LolCDE_FtsE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003593">
        <property type="entry name" value="AAA+_ATPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003838">
        <property type="entry name" value="ABC3_permease_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003439">
        <property type="entry name" value="ABC_transporter-like_ATP-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017871">
        <property type="entry name" value="ABC_transporter-like_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017911">
        <property type="entry name" value="MacB_ATP-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025857">
        <property type="entry name" value="MacB_PCD"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00005">
        <property type="entry name" value="ABC_tran"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02687">
        <property type="entry name" value="FtsX"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12704">
        <property type="entry name" value="MacB_PCD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00382">
        <property type="entry name" value="AAA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00211">
        <property type="entry name" value="ABC_TRANSPORTER_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50893">
        <property type="entry name" value="ABC_TRANSPORTER_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="10" id="KW-0046">Antibiotic resistance</keyword>
    <keyword evidence="6 11" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="3" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="9 12" id="KW-0472">Membrane</keyword>
    <keyword evidence="5 11" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="15" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="7" id="KW-1278">Translocase</keyword>
    <keyword evidence="4 12" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="8 12" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="12">
        <location>
            <begin position="274"/>
            <end position="294"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="12">
        <location>
            <begin position="521"/>
            <end position="545"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="12">
        <location>
            <begin position="572"/>
            <end position="597"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="12">
        <location>
            <begin position="609"/>
            <end position="631"/>
        </location>
    </feature>
    <feature type="domain" description="ABC transporter" evidence="13">
        <location>
            <begin position="6"/>
            <end position="244"/>
        </location>
    </feature>
    <feature type="binding site" evidence="11">
        <location>
            <begin position="42"/>
            <end position="49"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00005236"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022967"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00023251"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00434"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="12">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="13">
        <source>
            <dbReference type="PROSITE" id="PS50893"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="14">
        <source>
            <dbReference type="EMBL" id="ABX34954.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="15">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="648" mass="68843" checksum="BD76A1D77EBBBD5E" modified="2008-01-15" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="34" xmlns="http://uniprot.org/uniprot">
    <accession>A9BTS6</accession>
    <name>A9BTS6_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Putative lipoprotein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Daci_2702</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="2" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX35340.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_2702"/>
    <dbReference type="PRIDE" id="A9BTS6"/>
    <dbReference type="EnsemblBacteria" id="ABX35340">
        <property type="protein sequence ID" value="ABX35340"/>
        <property type="gene ID" value="Daci_2702"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_2702"/>
    <dbReference type="HOGENOM" id="CLU_3098049_0_0_4"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0449">Lipoprotein</keyword>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ABX35340.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="51" mass="6033" checksum="DDD1967883A0B066" modified="2008-01-15" version="1">MDFLAAHPERIKEIQRQCKEDRTKVGDELCRRAAEAANRRFFGDRPEQKSK</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="55" xmlns="http://uniprot.org/uniprot">
    <accession>A9BTT0</accession>
    <name>A9BTT0_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">acidPPc domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Daci_2706</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="4" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX35344.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_2706"/>
    <dbReference type="PRIDE" id="A9BTT0"/>
    <dbReference type="EnsemblBacteria" id="ABX35344">
        <property type="protein sequence ID" value="ABX35344"/>
        <property type="gene ID" value="Daci_2706"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_2706"/>
    <dbReference type="eggNOG" id="COG3907">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_070327_2_0_4"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036938">
        <property type="entry name" value="P_Acid_Pase_2/haloperoxi_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000326">
        <property type="entry name" value="P_Acid_Pase_2/haloperoxidase"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01569">
        <property type="entry name" value="PAP2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48317">
        <property type="entry name" value="SSF48317"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="23"/>
            <end position="43"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="82"/>
            <end position="98"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="110"/>
            <end position="131"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="193"/>
            <end position="212"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="224"/>
            <end position="242"/>
        </location>
    </feature>
    <feature type="domain" description="acidPPc" evidence="2">
        <location>
            <begin position="114"/>
            <end position="243"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF01569"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ABX35344.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="260" mass="28955" checksum="DAF31F93191B3B83" modified="2008-01-15" version="1">MPPNEFRLLGNAPLSNALFAPRFLITHLALPAGAALIISSLLMDGGGDFWVADHLYRLQGSRWALRDAWLTNNLLHRGGKNLSTLLAIVVAATCIWAWRKKRSNNCTAHLRWPLLYLFCAYVIAALTVSALKSFTNMDCPWNLVRYGGARVFVGLFETRPPGMPRGVCFPAGHASAGYAWVSLYFFTLMVRPAWRWMALAAGLMIGAIFGWTQQVRGAHFLSHDLWTLLICWVVALGLFMVWQRWFVGGSGDVHSSGFQA</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="75" xmlns="http://uniprot.org/uniprot">
    <accession>A9BU87</accession>
    <name>A9BU87_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Transcriptional regulator, LysR family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Daci_3164</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="4" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the LysR transcriptional regulatory family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX35802.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_3164"/>
    <dbReference type="PRIDE" id="A9BU87"/>
    <dbReference type="EnsemblBacteria" id="ABX35802">
        <property type="protein sequence ID" value="ABX35802"/>
        <property type="gene ID" value="Daci_3164"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_3164"/>
    <dbReference type="eggNOG" id="COG0583">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_039613_16_2_4"/>
    <dbReference type="OMA" id="REICDIR"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003700">
        <property type="term" value="F:DNA-binding transcription factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005119">
        <property type="entry name" value="LysR_subst-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000847">
        <property type="entry name" value="Tscrpt_reg_HTH_LysR"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036390">
        <property type="entry name" value="WH_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00126">
        <property type="entry name" value="HTH_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03466">
        <property type="entry name" value="LysR_substrate"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46785">
        <property type="entry name" value="SSF46785"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50931">
        <property type="entry name" value="HTH_LYSR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HTH lysR-type" evidence="2">
        <location>
            <begin position="26"/>
            <end position="83"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00009437"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS50931"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ABX35802.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="329" mass="35941" checksum="A36C822C33A4C67A" modified="2008-01-15" version="1">MPAAARKAANKAANKADRLTCRSQAMDINLIRNFVEIVDARSLSAAARKRDITRSKVSKELKALETALGVTLLHRTTRSFLPTAAGEVLYEHGRSIIQEVEAAQGAIDALQHVVTGSVRLSIPTGLGELYLADMLLAFQKRHPQVRIRVLFSNRVSDPMSAQVDVAVRVARDVQEHLVARDLGPVGFGLYASSAYAKARPFHDPAEIPHGVLLTPPGDGKTYAVSVKKGQQEIALKCEPCITSEHFPFLKQSMLRGSGVATLPNYMVMDELRSGAVQRVCPDWTVSGLGDRLYIITAEDRRPSHAVKVMTEFLRASLLRFVEQAGEPGP</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2021-06-02" version="61" xmlns="http://uniprot.org/uniprot">
    <accession>A9BUG0</accession>
    <name>A9BUG0_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="5">Probable membrane transporter protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="6" type="ordered locus">Daci_1219</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="7" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="5">Cell membrane</location>
            <topology evidence="5">Multi-pass membrane protein</topology>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="5">Belongs to the 4-toluene sulfonate uptake permease (TSUP) (TC 2.A.102) family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX33863.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012203149.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="ABX33863">
        <property type="protein sequence ID" value="ABX33863"/>
        <property type="gene ID" value="Daci_1219"/>
    </dbReference>
    <dbReference type="GeneID" id="60685779"/>
    <dbReference type="KEGG" id="dac:Daci_1219"/>
    <dbReference type="eggNOG" id="COG0730">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_045498_7_0_4"/>
    <dbReference type="OMA" id="KELKGHW"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002781">
        <property type="entry name" value="TM_pro_TauE-like"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01925">
        <property type="entry name" value="TauE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="4 5" id="KW-0472">Membrane</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 5" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="3 5" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="71"/>
            <end position="93"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="102"/>
            <end position="120"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="140"/>
            <end position="170"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="182"/>
            <end position="201"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="207"/>
            <end position="225"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="232"/>
            <end position="250"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="RuleBase" id="RU363041"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="ABX33863.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="252" mass="25935" checksum="F62DF9E94A361B9D" modified="2008-01-15" version="1">MWDIALLMSAAFVAGALNAVAGGGSFLTLPALVFTGVPPVAANATGTVALLPGYMAGAWGFRQDMEPPPGLGMRGVIVLSLIGGSLGAALLLVTPDHLFRKVVPWLLLAATAMFAFAPQLRRMASRGSAEHAAHASPLKAGAGMLAVAIYGGYFNGGLGILLLALFGLLGQTRLHAMNGMKNLVSALLTAIAVAIYAAGGVVQWEQALVMMIAATAGGYGGARLARRIPPEWLRAGIVLTGLVMAGVFFWRQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="69" xmlns="http://uniprot.org/uniprot">
    <accession>A9BUG4</accession>
    <name>A9BUG4_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Quinone oxidoreductase, YhdH/YhfP family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_1223</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX33867.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012203153.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_1223"/>
    <dbReference type="PRIDE" id="A9BUG4"/>
    <dbReference type="EnsemblBacteria" id="ABX33867">
        <property type="protein sequence ID" value="ABX33867"/>
        <property type="gene ID" value="Daci_1223"/>
    </dbReference>
    <dbReference type="GeneID" id="60685783"/>
    <dbReference type="KEGG" id="dac:Daci_1223"/>
    <dbReference type="eggNOG" id="COG0604">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_026673_26_3_4"/>
    <dbReference type="OMA" id="AQMDYNS"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016491">
        <property type="term" value="F:oxidoreductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014188">
        <property type="entry name" value="Acrylyl-CoA_reductase_AcuI"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013149">
        <property type="entry name" value="ADH-like_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011032">
        <property type="entry name" value="GroES-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036291">
        <property type="entry name" value="NAD(P)-bd_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020843">
        <property type="entry name" value="PKS_ER"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43677:SF1">
        <property type="entry name" value="PTHR43677:SF1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00107">
        <property type="entry name" value="ADH_zinc_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00829">
        <property type="entry name" value="PKS_ER"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50129">
        <property type="entry name" value="SSF50129"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51735">
        <property type="entry name" value="SSF51735"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR02823">
        <property type="entry name" value="oxido_YhdH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="PKS_ER" evidence="1">
        <location>
            <begin position="10"/>
            <end position="324"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="SMART" id="SM00829"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX33867.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="328" mass="34224" checksum="39235F8A49C09E4B" modified="2008-01-15" version="1">MFKALLLTQPVPRETRAECVELDEASLPAGAVRVAVSHSTLNYKDALAITGRSPVVRQFPMVPGIDLAGTVLDSEDARFQPGDAVLLNGWGVGETHWGGLAQQARVNGDWLIRRPEAFSARDAMAIGTAGYTAMLCVMALQAHGITPSSGPVLVTGANGGVGSIAVALLSRLGFEVHAGTGRPEQAEHLKALGAARIVERSSLDAPGKPLQKEVWAAAVDSVGSHTLANVCASLRYGGCVAACGLAQGLDLPASVAPFILRGVSLLGIDSVYAPQARREQAWARLAAELPREVLERNTEEAGLADAVALAPRLLAGQVRGRVVIDTAR</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="54" xmlns="http://uniprot.org/uniprot">
    <accession>A9BUP2</accession>
    <name>A9BUP2_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Cytochrome c assembly protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Daci_1506</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="4" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX34150.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012203436.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_1506"/>
    <dbReference type="PRIDE" id="A9BUP2"/>
    <dbReference type="EnsemblBacteria" id="ABX34150">
        <property type="protein sequence ID" value="ABX34150"/>
        <property type="gene ID" value="Daci_1506"/>
    </dbReference>
    <dbReference type="GeneID" id="60686045"/>
    <dbReference type="KEGG" id="dac:Daci_1506"/>
    <dbReference type="eggNOG" id="COG4137">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_049710_1_1_4"/>
    <dbReference type="OMA" id="WLVLTVY"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0020037">
        <property type="term" value="F:heme binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0017004">
        <property type="term" value="P:cytochrome complex assembly"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002541">
        <property type="entry name" value="Cyt_c_assembly"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01578">
        <property type="entry name" value="Cytochrom_C_asm"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="14"/>
            <end position="31"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="43"/>
            <end position="61"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="67"/>
            <end position="86"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="98"/>
            <end position="117"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="129"/>
            <end position="150"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="177"/>
            <end position="199"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="214"/>
            <end position="232"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="244"/>
            <end position="263"/>
        </location>
    </feature>
    <feature type="domain" description="Cytochrom_C_asm" evidence="2">
        <location>
            <begin position="71"/>
            <end position="266"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF01578"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ABX34150.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="271" mass="29067" checksum="FA0F5369629539F2" modified="2008-01-15" version="1">MLSVPLISANVSPLGWMLALAAAVAYAVPAAGARRISQAGARIALRLAWVLHALALAWGLLGEQPHFGFAPALSMTAWLVLTVYGVEQQLFPKMRAQLALSALGTAAVLMAALFPGTPLHVNASPWLPLHLALGIASYGLFAAAVVHASLMTRAEQHMRLGGGGHDSGLPLLTLERLTFRFVSAGFVLLTATLAAGWLFGEQLYGKAWVWNHKSVFSLLSWLTFAVLLIGRARFGWRGRSAVRMLYAGALLLLLAYAGSRFVMEVLLERTT</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="50" xmlns="http://uniprot.org/uniprot">
    <accession>A9BV50</accession>
    <name>A9BV50_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Peptidase A24A prepilin type IV</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ordered locus">Daci_2074</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="5" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the peptidase A24 family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX34714.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_2074"/>
    <dbReference type="PRIDE" id="A9BV50"/>
    <dbReference type="EnsemblBacteria" id="ABX34714">
        <property type="protein sequence ID" value="ABX34714"/>
        <property type="gene ID" value="Daci_2074"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_2074"/>
    <dbReference type="eggNOG" id="COG4960">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_057101_6_0_4"/>
    <dbReference type="OMA" id="CPALARW"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004190">
        <property type="term" value="F:aspartic-type endopeptidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000045">
        <property type="entry name" value="Prepilin_IV_endopep_pep"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01478">
        <property type="entry name" value="Peptidase_A24"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2" id="KW-0472">Membrane</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="2" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="6"/>
            <end position="23"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="30"/>
            <end position="48"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="54"/>
            <end position="75"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="87"/>
            <end position="112"/>
        </location>
    </feature>
    <feature type="domain" description="Peptidase_A24" evidence="3">
        <location>
            <begin position="9"/>
            <end position="114"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00005801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF01478"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="ABX34714.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="189" mass="20191" checksum="877D570BCD4E3FAF" modified="2008-01-15" version="1">MERTSLWLCVCITWLATIAVMDLRIRRVRNWMVLLGLATGAAALASGAQPFQVSAWNALAGLLAGFVVLLPFYALRWMGAGDVKFGAVAGLWFGLSFDLLLIWTGGSLLAGLHGLLVLSLRHLSHSPTGLWLQARLPLAWAARLAPLGAASQPAGATDGPRQPQRSIPYAGYMAIAAIALAWRHSQPLA</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="66" xmlns="http://uniprot.org/uniprot">
    <accession>A9BV59</accession>
    <name>A9BV59_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="5">TPR repeat-containing protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ordered locus">Daci_2083</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="6" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX34723.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_2083"/>
    <dbReference type="PRIDE" id="A9BV59"/>
    <dbReference type="EnsemblBacteria" id="ABX34723">
        <property type="protein sequence ID" value="ABX34723"/>
        <property type="gene ID" value="Daci_2083"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_2083"/>
    <dbReference type="eggNOG" id="COG0457">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_037727_0_0_4"/>
    <dbReference type="OMA" id="RTHPSYA"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.25.40.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR032710">
        <property type="entry name" value="NTF2-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037401">
        <property type="entry name" value="SnoaL-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011990">
        <property type="entry name" value="TPR-like_helical_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019734">
        <property type="entry name" value="TPR_repeat"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13474">
        <property type="entry name" value="SnoaL_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00028">
        <property type="entry name" value="TPR"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48452">
        <property type="entry name" value="SSF48452"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54427">
        <property type="entry name" value="SSF54427"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50005">
        <property type="entry name" value="TPR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0732">Signal</keyword>
    <keyword evidence="1" id="KW-0802">TPR repeat</keyword>
    <feature type="signal peptide" evidence="3">
        <location>
            <begin position="1"/>
            <end position="25"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5002733103" evidence="3">
        <location>
            <begin position="26"/>
            <end position="460"/>
        </location>
    </feature>
    <feature type="repeat" description="TPR" evidence="1">
        <location>
            <begin position="94"/>
            <end position="127"/>
        </location>
    </feature>
    <feature type="domain" description="SnoaL-like" evidence="4">
        <location>
            <begin position="353"/>
            <end position="455"/>
        </location>
    </feature>
    <feature type="coiled-coil region" evidence="2">
        <location>
            <begin position="235"/>
            <end position="305"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00339"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="Pfam" id="PF13474"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="ABX34723.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="460" mass="48038" checksum="401F141AF222F69C" modified="2008-01-15" version="1">MRIARPVAIAAFSLGAALCGAFAHASQEAVDEVSRLLEQGKAPQAAKQAEAYLKQNPADVQMRFLQGVIAAEQRQNAQAIKIFTALTRDYPSLPEPYNNLAVLYAAEGQERKASEVLEQAIRTNPSYATAHENLGDLYARMASDAYAKALQLDGSRQAIQPKLALITQIFPKQGGAQVKTAQATATATAASTKVADAKAAQAREADAKLAETRAAEAKAAEAKAAEFKAAEVKAADAKAAQAKAAEAKAAEAKAAEAKAAEAKLAQAKAAEAKAAEAKLAQEKAAQAAQDKARAAEEARQAAAKAAAPATAAAATAAAATAAAATAVAAAEPAKAAPAVDEKKAAQSAAAQEVEAAVKAWSTAWAGQDMDRYLDAYSDHFSPADGSSLAKWKEQRRQRIVGRTAIVVNVRDLKVTVDGDKATAQFRQYYASGALKTTTRKTLRMQREKGQWRITHEGTGS</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="52" xmlns="http://uniprot.org/uniprot">
    <accession>A9BV98</accession>
    <name>A9BV98_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="7">DoxX family protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ordered locus">Daci_2122</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="8" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the DoxX family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX34762.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012204045.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_2122"/>
    <dbReference type="PRIDE" id="A9BV98"/>
    <dbReference type="EnsemblBacteria" id="ABX34762">
        <property type="protein sequence ID" value="ABX34762"/>
        <property type="gene ID" value="Daci_2122"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_2122"/>
    <dbReference type="eggNOG" id="COG2259">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_058421_6_3_4"/>
    <dbReference type="OMA" id="HGGYALE"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR032808">
        <property type="entry name" value="DoxX"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07681">
        <property type="entry name" value="DoxX"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5 6" id="KW-0472">Membrane</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 6" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="4 6" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="12"/>
            <end position="31"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="66"/>
            <end position="92"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="104"/>
            <end position="126"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00006679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="ABX34762.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="129" mass="14017" checksum="CF9DAC89EFEA0F9A" modified="2008-01-15" version="1">MKFWSHFHHPQAAMVLLRVTLAVLLLFHGWAKLRYGIGSIERMVESAGAPGWLAYAVYLGEVVAPLLLLVGLWVVPAALVIAINMVVAFALVHTGQVMQLHSSGGWALELQAFFFITALVVAMGHAKGK</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="83" xmlns="http://uniprot.org/uniprot">
    <accession>A9BVB1</accession>
    <name>A9BVB1_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="8">ABC transporter related</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="8" type="ordered locus">Daci_2135</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="9" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="6">Lacks conserved residue(s) required for the propagation of feature annotation.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX34775.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012204058.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_2135"/>
    <dbReference type="PRIDE" id="A9BVB1"/>
    <dbReference type="EnsemblBacteria" id="ABX34775">
        <property type="protein sequence ID" value="ABX34775"/>
        <property type="gene ID" value="Daci_2135"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_2135"/>
    <dbReference type="eggNOG" id="COG3845">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_000604_92_0_4"/>
    <dbReference type="OMA" id="KMIYGLV"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003593">
        <property type="entry name" value="AAA+_ATPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003439">
        <property type="entry name" value="ABC_transporter-like_ATP-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017871">
        <property type="entry name" value="ABC_transporter-like_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00005">
        <property type="entry name" value="ABC_tran"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SMART" id="SM00382">
        <property type="entry name" value="AAA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00211">
        <property type="entry name" value="ABC_TRANSPORTER_1"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50893">
        <property type="entry name" value="ABC_TRANSPORTER_2"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3 6" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="1" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="5" id="KW-0472">Membrane</keyword>
    <keyword evidence="2 6" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4" id="KW-1278">Translocase</keyword>
    <feature type="domain" description="ABC transporter" evidence="7">
        <location>
            <begin position="17"/>
            <end position="248"/>
        </location>
    </feature>
    <feature type="domain" description="ABC transporter" evidence="7">
        <location>
            <begin position="264"/>
            <end position="508"/>
        </location>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <begin position="49"/>
            <end position="56"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022967"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00434"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="PROSITE" id="PS50893"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="ABX34775.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="533" mass="56667" checksum="0AC2B9386670222E" modified="2008-01-15" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="66" xmlns="http://uniprot.org/uniprot">
    <accession>A9BVD9</accession>
    <name>A9BVD9_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="3">HhH-GPD family protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Daci_2163</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="4" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
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        <property type="protein sequence ID" value="ABX34803.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012204086.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_2163"/>
    <dbReference type="PRIDE" id="A9BVD9"/>
    <dbReference type="EnsemblBacteria" id="ABX34803">
        <property type="protein sequence ID" value="ABX34803"/>
        <property type="gene ID" value="Daci_2163"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_2163"/>
    <dbReference type="eggNOG" id="COG0122">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_000445_72_3_4"/>
    <dbReference type="OMA" id="YLWRSIE"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003824">
        <property type="term" value="F:catalytic activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006284">
        <property type="term" value="P:base-excision repair"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd00056">
        <property type="entry name" value="ENDO3c"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010316">
        <property type="entry name" value="AlkA_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011257">
        <property type="entry name" value="DNA_glycosylase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003265">
        <property type="entry name" value="HhH-GPD_domain"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00730">
        <property type="entry name" value="HhH-GPD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM01009">
        <property type="entry name" value="AlkA_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00478">
        <property type="entry name" value="ENDO3c"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48150">
        <property type="entry name" value="SSF48150"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="AlkA_N" evidence="2">
        <location>
            <begin position="15"/>
            <end position="142"/>
        </location>
    </feature>
    <feature type="domain" description="ENDO3c" evidence="1">
        <location>
            <begin position="152"/>
            <end position="324"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="SMART" id="SM00478"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="SMART" id="SM01009"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ABX34803.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="328" mass="36080" checksum="9732F5E14962EF0C" modified="2008-01-15" version="1">MSGRRGGHSLGAEQQLTLPAGYRMNEFWGFHRRDAQRLSECDLQDGDTIRMHKGLMWKGLPTLLTLELTQHCEEAAVVQARWRLPAGAGAIAGMDDVLAAMLRRMFGLSQDVGEFERRFGRHARLGPLLARQRGLHVPAACTPWEALSWAVTGQQISVAAAVSLRRRLIAAAGQPVALHDGHADAPQQLWCMPEAAQLAQLGEEDLRAAGFSRSKTHTLRLLAQAVQSGELPLDDWAALPELPVAEIRERLLALKGIGPWTVNYMLLRGYGHLDGPLHGDVAVRRALALLLKTDAMDAVQTELWLRDFAPWRALVAAHLWASLSSTAF</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="66" xmlns="http://uniprot.org/uniprot">
    <accession>A9BVG8</accession>
    <name>A9BVG8_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="13">Cytochrome bd ubiquinol oxidase subunit I</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="13" type="ordered locus">Daci_2397</name>
    </gene>
    <organism evidence="13 14">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="13 14" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="14">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="14" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="14">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="12">Cell inner membrane</location>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2 12">Belongs to the cytochrome ubiquinol oxidase subunit 1 family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX35035.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012204317.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_2397"/>
    <dbReference type="PRIDE" id="A9BVG8"/>
    <dbReference type="EnsemblBacteria" id="ABX35035">
        <property type="protein sequence ID" value="ABX35035"/>
        <property type="gene ID" value="Daci_2397"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_2397"/>
    <dbReference type="eggNOG" id="COG1271">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_030555_0_1_4"/>
    <dbReference type="OMA" id="FLINIAM"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0070069">
        <property type="term" value="C:cytochrome complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009055">
        <property type="term" value="F:electron transfer activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0019646">
        <property type="term" value="P:aerobic electron transport chain"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002585">
        <property type="entry name" value="Cyt-d_ubiquinol_oxidase_su_1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30365">
        <property type="entry name" value="PTHR30365"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01654">
        <property type="entry name" value="Cyt_bd_oxida_I"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF006446">
        <property type="entry name" value="Cyt_quinol_oxidase_1"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4 12" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="8 12" id="KW-0249">Electron transport</keyword>
    <keyword evidence="5 12" id="KW-0349">Heme</keyword>
    <keyword evidence="10 12" id="KW-0408">Iron</keyword>
    <keyword evidence="11 12" id="KW-0472">Membrane</keyword>
    <keyword evidence="7 12" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="14" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="6 12" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="9 12" id="KW-1133">Transmembrane helix</keyword>
    <keyword evidence="3 12" id="KW-0813">Transport</keyword>
    <feature type="transmembrane region" description="Helical" evidence="12">
        <location>
            <begin position="20"/>
            <end position="43"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="12">
        <location>
            <begin position="55"/>
            <end position="73"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="12">
        <location>
            <begin position="93"/>
            <end position="117"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="12">
        <location>
            <begin position="129"/>
            <end position="147"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="12">
        <location>
            <begin position="185"/>
            <end position="209"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="12">
        <location>
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            <end position="239"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="12">
        <location>
            <begin position="393"/>
            <end position="415"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="12">
        <location>
            <begin position="427"/>
            <end position="449"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="12">
        <location>
            <begin position="469"/>
            <end position="493"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00009819"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022448"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022617"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00022982"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00023004"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="12">
        <source>
            <dbReference type="PIRNR" id="PIRNR006446"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="13">
        <source>
            <dbReference type="EMBL" id="ABX35035.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="14">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="528" mass="58080" checksum="B69E1BEA53AAFB87" modified="2008-01-15" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="59" xmlns="http://uniprot.org/uniprot">
    <accession>A9BVJ0</accession>
    <name>A9BVJ0_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Acriflavin resistance protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Daci_2419</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="4" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX35057.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_2419"/>
    <dbReference type="PRIDE" id="A9BVJ0"/>
    <dbReference type="EnsemblBacteria" id="ABX35057">
        <property type="protein sequence ID" value="ABX35057"/>
        <property type="gene ID" value="Daci_2419"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_2419"/>
    <dbReference type="eggNOG" id="COG0841">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_002755_1_2_4"/>
    <dbReference type="OMA" id="QACLMRF"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="GO" id="GO:0022857">
        <property type="term" value="F:transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
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        <property type="match status" value="2"/>
    </dbReference>
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        <property type="entry name" value="AcrB_DN_DC_subdom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001036">
        <property type="entry name" value="Acrflvin-R"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR32063">
        <property type="entry name" value="PTHR32063"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00873">
        <property type="entry name" value="ACR_tran"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00702">
        <property type="entry name" value="ACRIFLAVINRP"/>
    </dbReference>
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        <property type="entry name" value="SSF82714"/>
        <property type="match status" value="2"/>
    </dbReference>
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    <keyword evidence="2" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="2" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="12"/>
            <end position="33"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="335"/>
            <end position="354"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="361"/>
            <end position="379"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="391"/>
            <end position="412"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="432"/>
            <end position="452"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="464"/>
            <end position="491"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="529"/>
            <end position="549"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="861"/>
            <end position="879"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="886"/>
            <end position="906"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="912"/>
            <end position="937"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="957"/>
            <end position="978"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="990"/>
            <end position="1016"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1026"/>
            <end position="1053"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ABX35057.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="1053" mass="112062" checksum="DD9B0CD32D687649" modified="2008-01-15" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="53" xmlns="http://uniprot.org/uniprot">
    <accession>A9BVL5</accession>
    <name>A9BVL5_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ordered locus">Daci_2444</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="5" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Periplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the UPF0065 (bug) family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX35082.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012204364.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_2444"/>
    <dbReference type="PRIDE" id="A9BVL5"/>
    <dbReference type="EnsemblBacteria" id="ABX35082">
        <property type="protein sequence ID" value="ABX35082"/>
        <property type="gene ID" value="Daci_2444"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_2444"/>
    <dbReference type="eggNOG" id="COG3181">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_045683_0_0_4"/>
    <dbReference type="OMA" id="FAPVIQI"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0042597">
        <property type="term" value="C:periplasmic space"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.190.150">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005064">
        <property type="entry name" value="BUG"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR042100">
        <property type="entry name" value="Bug_dom1"/>
    </dbReference>
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        <property type="entry name" value="PTHR42928"/>
        <property type="match status" value="1"/>
    </dbReference>
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        <property type="entry name" value="TctC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF017082">
        <property type="entry name" value="YflP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="3">
        <location>
            <begin position="1"/>
            <end position="33"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5002735134" evidence="3">
        <location>
            <begin position="34"/>
            <end position="334"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004418"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00006987"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="ABX35082.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="334" mass="35198" checksum="0E28F837B695801B" modified="2008-01-15" version="1">MPCTDQKPSFQKRRFLWACALAATAALPAAALAERFPERPISFVVPFPPGGPTDAMARTLAISLTETLGQSVIVENKAGAGGNIGADFVARARPDGYTIMFGTSGPLAINKHLYRKINYDPQTSFAPIIRVGHLPNVLVVNPATKATTVQELIAQDKAKPGSLDYASSGNGASSHLAGVLFNKMAGTSLQHIPYKGTGPALNDLLAGQVNMTFTDILTAMPYIKAGKFKAIGVATEKRSQAMPDIPTIAEQGLPGYDVSVFFGVVAPAGTPADRIETLNAAFRKALSSERIRKTFADQGLEPASDLSPAGLSTFIAQEVTKWKAVVDASGAKLD</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="74" xmlns="http://uniprot.org/uniprot">
    <accession>A9BVY5</accession>
    <name>A9BVY5_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Transcriptional regulator, TetR family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Daci_2860</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="4" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX35498.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012204708.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_2860"/>
    <dbReference type="PRIDE" id="A9BVY5"/>
    <dbReference type="EnsemblBacteria" id="ABX35498">
        <property type="protein sequence ID" value="ABX35498"/>
        <property type="gene ID" value="Daci_2860"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_2860"/>
    <dbReference type="eggNOG" id="COG1309">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_069356_1_0_4"/>
    <dbReference type="OMA" id="HLMFTIW"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0045892">
        <property type="term" value="P:negative regulation of transcription, DNA-templated"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009057">
        <property type="entry name" value="Homeobox-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001647">
        <property type="entry name" value="HTH_TetR"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036271">
        <property type="entry name" value="Tet_transcr_reg_TetR-rel_C_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013573">
        <property type="entry name" value="Tscrpt_reg_YcdC_C"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08362">
        <property type="entry name" value="TetR_C_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00440">
        <property type="entry name" value="TetR_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00455">
        <property type="entry name" value="HTHTETR"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46689">
        <property type="entry name" value="SSF46689"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48498">
        <property type="entry name" value="SSF48498"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50977">
        <property type="entry name" value="HTH_TETR_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HTH tetR-type" evidence="2">
        <location>
            <begin position="25"/>
            <end position="85"/>
        </location>
    </feature>
    <feature type="DNA-binding region" description="H-T-H motif" evidence="1">
        <location>
            <begin position="48"/>
            <end position="67"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00335"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS50977"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ABX35498.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="226" mass="24999" checksum="FA1B381B4BEAAAFF" modified="2008-01-15" version="1">MATLSDNAPPSLARSATRKPTAARLRKELNILQTAELHFAQYGLEGASLELIAHDAGLSRHNLLYYFASKEELYLRVLGDVLTQWLAGMSDLLRGDDPAEALRIYIRAKLQSSRERPHGSRVFTREVMAGAPRFGQAIASQVGPALAADVQAFERWVAQGKIARVDFTHLMFILWSVTQAYADQQAQFALLLGRSELTADDYDTAADLIYRLVIRGLQPDTAALAQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="48" xmlns="http://uniprot.org/uniprot">
    <accession>A9BW11</accession>
    <name>A9BW11_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Daci_3189</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="2" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX35827.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012205027.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_3189"/>
    <dbReference type="PRIDE" id="A9BW11"/>
    <dbReference type="EnsemblBacteria" id="ABX35827">
        <property type="protein sequence ID" value="ABX35827"/>
        <property type="gene ID" value="Daci_3189"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_3189"/>
    <dbReference type="eggNOG" id="COG1917">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_055103_0_0_4"/>
    <dbReference type="OMA" id="GFIFHLS"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ABX35827.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="386" mass="43148" checksum="8DA6547E5952A02F" modified="2008-01-15" version="1">MHELQAAFAELIASPRQHTLFQQARSMESLLVQLRLLWCLPAWNDGRLMQALQQLNQAAAVPTAALLAGGWLPHRYEARTRSILWCLPDGPATEPFHDEYISRCLQRRLLNQFIRPRTPLAGLCAESLPRPGGHPPAGFIFHLSRCGSTLVSGCLSELDGTLVLSEPPVFTELLLDSSLDRAQKRDGIAGLVSAITVAVPGRRNLVVKWNAWDIFQWELLHDLYPEVPGLMLVRDPVEILASHHRQAGRHMSGDPSLAGAGPVFCCGSGSQPFVSVLDHRMRVLQAMMERMRDLHESQGVPVLHYRQLDAEAMEQIARRFDLHAGEAARQRIAARLRQHAKALDQRFEPDGRDKAAVFGEGERQHIEAHLGPLHAQLLRRAQPVHE</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="54" xmlns="http://uniprot.org/uniprot">
    <accession>A9BW60</accession>
    <name>A9BW60_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Daci_3238</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="2" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX35876.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012205076.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_3238"/>
    <dbReference type="PRIDE" id="A9BW60"/>
    <dbReference type="EnsemblBacteria" id="ABX35876">
        <property type="protein sequence ID" value="ABX35876"/>
        <property type="gene ID" value="Daci_3238"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_3238"/>
    <dbReference type="eggNOG" id="COG2369">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_036295_0_0_4"/>
    <dbReference type="OMA" id="NKPIGHK"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017029">
        <property type="entry name" value="Phage_head_put"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF034565">
        <property type="entry name" value="UCP034565"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ABX35876.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="369" mass="41319" checksum="840C9434E14752CA" modified="2008-01-15" version="1">MASVNDLILSEAIRHMVALQRYDNGVVARIIALLNRSDLRLMAELTARLEGLDAGSFTMQRLESLLTSIWSLNSEAYAQLGRALTEELKQFVPYEVSYQEQMLKTHLPVGVHVAAVSAEQIYAAALSRPFQGLLLQGVWSDLDAGKLKRVRQAIAQGFVEGKTTDQIIRELRGTRAKGYIDGLIQKDRRDIEAVVRTALAHMAGVAQDNVMEANADLIKAAMWSSTLDLRTSPMCRIRDRLLYTPDTHKPIGHKVPWLSGPGRLHWRCRSGQVPVLKSHKELGIDLPDIEVNGRTRASMDGQVPKETSYADWLKNQSLARQTDVLGETRARLMRDGKLGMDAMYDSKGRYLTLDELRQRDAEAFKRAGL</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="59" xmlns="http://uniprot.org/uniprot">
    <accession>A9BWA8</accession>
    <name>A9BWA8_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="8">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="8" type="ordered locus">Daci_3492</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="9" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the autoinducer-2 exporter (AI-2E) (TC 2.A.86) family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX36128.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012205328.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_3492"/>
    <dbReference type="PRIDE" id="A9BWA8"/>
    <dbReference type="EnsemblBacteria" id="ABX36128">
        <property type="protein sequence ID" value="ABX36128"/>
        <property type="gene ID" value="Daci_3492"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_3492"/>
    <dbReference type="eggNOG" id="COG0628">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_041771_2_2_4"/>
    <dbReference type="OMA" id="EIAYVYQ"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002549">
        <property type="entry name" value="AI-2E-like"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR21716">
        <property type="entry name" value="PTHR21716"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01594">
        <property type="entry name" value="AI-2E_transport"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5 7" id="KW-0472">Membrane</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 7" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="4 7" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="12"/>
            <end position="43"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="63"/>
            <end position="85"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="159"/>
            <end position="176"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="216"/>
            <end position="233"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="239"/>
            <end position="269"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="276"/>
            <end position="298"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="318"/>
            <end position="340"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="6">
        <location>
            <begin position="361"/>
            <end position="387"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="6">
        <location>
            <begin position="369"/>
            <end position="387"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00009773"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="ABX36128.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="387" mass="42027" checksum="C138A81426DCA9DE" modified="2008-01-15" version="1">MNLLPLHKRTFMLLLIAATIGFGAVLWEFMGAIFWGVALAILFSPLHRRLLARMPRRTNLAALSTLLLCLVVAILPLALIGASLVREASLIYERVNSGNLDAGTYLQQIMDALPSWVTPWLERLHLGSLAELQDKLSSIAMQASKLAATKALGIGQNTFGFLVGFCVMLYLLFFLLRDGRDLTQRIRMAIPLQADHKAELSSKFTTVIRATVKGNLAVAAAQGALGGLIFWILGIQGPVLWGVVMAFLSLLPAVGAGLIWAPVAIYFLATGAMGKGLILIAYGVLVIGLVDNVLRPLLVGKDTKMPDYIVLISTLGGMALFGLTGFVIGPVIAALFMAIWDMFSRMQVQDEEKRRQLAQAGLAHAEYQTSDDMDLKQAPHDPRPPAR</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="40" xmlns="http://uniprot.org/uniprot">
    <accession>A9BWZ5</accession>
    <name>A9BWZ5_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Daci_4349</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="4" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX36980.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012206152.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_4349"/>
    <dbReference type="PRIDE" id="A9BWZ5"/>
    <dbReference type="EnsemblBacteria" id="ABX36980">
        <property type="protein sequence ID" value="ABX36980"/>
        <property type="gene ID" value="Daci_4349"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_4349"/>
    <dbReference type="HOGENOM" id="CLU_2355103_0_0_4"/>
    <dbReference type="OMA" id="HIRDGRW"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="2" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="27"/>
            <end position="49"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="28"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="53"/>
            <end position="108"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="1"/>
            <end position="25"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Pro residues" evidence="1">
        <location>
            <begin position="70"/>
            <end position="86"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="87"/>
            <end position="108"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ABX36980.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="108" mass="11256" checksum="59A63B5720716831" modified="2008-01-15" version="1">MDNSPRRMHAPLERQRSENNHIRDGRWPLRIGALTAAVALILVLMFNFMAPKGRLDAPSATGATGTPSSSPLPSPSPSPSPATQPAPSAAPQQADPATTPAPTSTPAR</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2021-09-29" version="40" xmlns="http://uniprot.org/uniprot">
    <accession>A9BX25</accession>
    <name>A9BX25_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Daci_4379</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="2" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX37010.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012206182.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="ABX37010">
        <property type="protein sequence ID" value="ABX37010"/>
        <property type="gene ID" value="Daci_4379"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_4379"/>
    <dbReference type="eggNOG" id="ENOG5033I9W">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_161888_1_0_4"/>
    <dbReference type="OMA" id="RAKVPMP"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ABX37010.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="126" mass="13448" checksum="9408982BBAE0B349" modified="2008-01-15" version="1">MNPTQPSPTTDSHSTRQLSNALTQVDHLVQQGCAEISAIAQLALAWLETPKGHRHMDVVARALQSIRDSAETLADYAGTEAQAMGCGFEDAAEMRRAEAAEAAAKAMAHLFERRANVPMSAQDGSS</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="51" xmlns="http://uniprot.org/uniprot">
    <accession>A9BXA4</accession>
    <name>A9BXA4_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Putative transmembrane protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_5551</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX38180.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012207349.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_5551"/>
    <dbReference type="PRIDE" id="A9BXA4"/>
    <dbReference type="EnsemblBacteria" id="ABX38180">
        <property type="protein sequence ID" value="ABX38180"/>
        <property type="gene ID" value="Daci_5551"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_5551"/>
    <dbReference type="eggNOG" id="COG3671">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_129294_1_0_4"/>
    <dbReference type="OMA" id="WFLYRIV"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1 2" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="27"/>
            <end position="55"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="101"/>
            <end position="120"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX38180.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="130" mass="14809" checksum="FCD30C43206A2C94" modified="2008-01-15" version="1">MNDDYIEVRALDQSRIEGLKAWGWVSYLLHLVVAVAAVVPGAQPSIALLVISLIIDLVKRGDAEGSWMANHFSWRIRSVIWAGILYLVTAPLWLLFFVPGWIAWTVISIWFLYRIVRGMVAMNRNQAVDR</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="83" xmlns="http://uniprot.org/uniprot">
    <accession>A9BXB3</accession>
    <name>A9BXB3_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Transcriptional regulator, IclR family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ordered locus">Daci_5560</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="6" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX38189.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_5560"/>
    <dbReference type="PRIDE" id="A9BXB3"/>
    <dbReference type="EnsemblBacteria" id="ABX38189">
        <property type="protein sequence ID" value="ABX38189"/>
        <property type="gene ID" value="Daci_5560"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_5560"/>
    <dbReference type="eggNOG" id="COG1414">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_062618_0_1_4"/>
    <dbReference type="OMA" id="HTHKIMS"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046278">
        <property type="term" value="P:3,4-dihydroxybenzoate metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0045893">
        <property type="term" value="P:positive regulation of transcription, DNA-templated"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.450.40">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029016">
        <property type="entry name" value="GAF-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012794">
        <property type="entry name" value="PcaR_PcaU"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014757">
        <property type="entry name" value="Tscrpt_reg_IclR_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005471">
        <property type="entry name" value="Tscrpt_reg_IclR_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036390">
        <property type="entry name" value="WH_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF09339">
        <property type="entry name" value="HTH_IclR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01614">
        <property type="entry name" value="IclR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00346">
        <property type="entry name" value="HTH_ICLR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46785">
        <property type="entry name" value="SSF46785"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR02431">
        <property type="entry name" value="pcaR_pcaU"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51077">
        <property type="entry name" value="HTH_ICLR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51078">
        <property type="entry name" value="ICLR_ED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0804">Transcription</keyword>
    <keyword evidence="1" id="KW-0805">Transcription regulation</keyword>
    <feature type="domain" description="HTH iclR-type" evidence="3">
        <location>
            <begin position="43"/>
            <end position="103"/>
        </location>
    </feature>
    <feature type="domain" description="IclR-ED" evidence="4">
        <location>
            <begin position="104"/>
            <end position="288"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023015"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023163"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="PROSITE" id="PS51077"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="PROSITE" id="PS51078"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="ABX38189.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="294" mass="31957" checksum="EAD1B07585983897" modified="2008-01-15" version="1">MFVCRTKVRRKNYRAMEKNAASVISTGGAEEEGGTPRPGDSYVQSFARGLGVIRSFSAEAPAQTLSEVAARTGLTRAGARRILLTLQTLGYVKSDGKLFQLTPRIMELGFAYLSSTPVWNLAEPVMENLVDEVKESCSAAVLDGGDIVYVLRVHTHKIMSTNLGVGSRLPACWTSMGRVLLAGESDESLQALLDARERRQFTALTEQDDERLRQRILEVRAQGWALVDQELAEGLISIAAPVKNAAGRTVAALNISGQANRNSAEMMRGQLLPRLLAATQLVSQLLRASSRLSL</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="58" xmlns="http://uniprot.org/uniprot">
    <accession>A9BXB8</accession>
    <name>A9BXB8_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ordered locus">Daci_5565</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="5" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Periplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the UPF0065 (bug) family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX38194.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012207363.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_5565"/>
    <dbReference type="PRIDE" id="A9BXB8"/>
    <dbReference type="EnsemblBacteria" id="ABX38194">
        <property type="protein sequence ID" value="ABX38194"/>
        <property type="gene ID" value="Daci_5565"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_5565"/>
    <dbReference type="eggNOG" id="COG3181">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_045683_0_0_4"/>
    <dbReference type="OMA" id="LHHTTRR"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0042597">
        <property type="term" value="C:periplasmic space"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.190.150">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005064">
        <property type="entry name" value="BUG"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR042100">
        <property type="entry name" value="Bug_dom1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006311">
        <property type="entry name" value="TAT_signal"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR42928">
        <property type="entry name" value="PTHR42928"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03401">
        <property type="entry name" value="TctC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF017082">
        <property type="entry name" value="YflP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51318">
        <property type="entry name" value="TAT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="3">
        <location>
            <begin position="1"/>
            <end position="35"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5002736130" evidence="3">
        <location>
            <begin position="36"/>
            <end position="335"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004418"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00006987"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="ABX38194.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="335" mass="35056" checksum="A1EEACB05451C113" modified="2008-01-15" version="1">MSDQTTHFTRRRGLQALAAASLTALGALSGTAALAQDGFPSKPITILVPFAAGGTTDILARIVAQALQQELGQTVIVDNKPGAGGNIGAVAAARAPADGYTLFMGTVGTHAINAALYAKPGFDPIKDFSPLTRVANVPNLLVAHPSQPFKTVKEMIAYARANPGKLNYGSSGSGSSIHLSGELFRSMTGLDMVHVPYKGSAPAITDLLGNQIAIMFDNMPSAIQHVRSGKLRPIAVTTAKRSPELPDVPTVAEAGVPGYEATSWFGLWTQAKTPAAVQQRLYTAIAKVLKDPAVVKKINDQGGDVVIDTPAEFLAYIKAESTKWSKVVKDSGAQV</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="52" xmlns="http://uniprot.org/uniprot">
    <accession>A9BXD3</accession>
    <name>A9BXD3_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Fimbrial assembly family protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Daci_5580</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="4" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX38209.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012207378.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_5580"/>
    <dbReference type="PRIDE" id="A9BXD3"/>
    <dbReference type="EnsemblBacteria" id="ABX38209">
        <property type="protein sequence ID" value="ABX38209"/>
        <property type="gene ID" value="Daci_5580"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_5580"/>
    <dbReference type="eggNOG" id="COG3166">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_081304_1_0_4"/>
    <dbReference type="OMA" id="DRNLPVH"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007813">
        <property type="entry name" value="PilN"/>
    </dbReference>
    <dbReference type="Pfam" id="PF05137">
        <property type="entry name" value="PilN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="2" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="2" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="20"/>
            <end position="43"/>
        </location>
    </feature>
    <feature type="coiled-coil region" evidence="1">
        <location>
            <begin position="47"/>
            <end position="91"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ABX38209.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="203" mass="22682" checksum="1C599711DC9EDB27" modified="2008-01-15" version="1">MILINLLPHREATRKRRKEAFQATMVLSALVGLLIIGAVYWWYQMMIEAQQAKNSMLRAEITVLESQIKEIAGLEDEITALRARQKAVEDLQSDRNLPVHMLNELVAQLPDGVYLSSIKQEGLVVTMQGTAQSNERVSEMLRNLSEGTPWISKPELAEIVAKTVNVTPKDQRRAAAFNLRFQLTRASVAEKSLSTAANPGKSQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="60" xmlns="http://uniprot.org/uniprot">
    <accession>A9BXD7</accession>
    <name>A9BXD7_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Beta-lactamase domain protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_5584</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX38213.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012207382.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_5584"/>
    <dbReference type="PRIDE" id="A9BXD7"/>
    <dbReference type="EnsemblBacteria" id="ABX38213">
        <property type="protein sequence ID" value="ABX38213"/>
        <property type="gene ID" value="Daci_5584"/>
    </dbReference>
    <dbReference type="GeneID" id="60689936"/>
    <dbReference type="KEGG" id="dac:Daci_5584"/>
    <dbReference type="eggNOG" id="COG0426">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_066633_0_0_4"/>
    <dbReference type="OMA" id="CGIDLMT"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.60.15.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001279">
        <property type="entry name" value="Metallo-B-lactamas"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045761">
        <property type="entry name" value="ODP_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036866">
        <property type="entry name" value="RibonucZ/Hydroxyglut_hydro"/>
    </dbReference>
    <dbReference type="Pfam" id="PF19583">
        <property type="entry name" value="ODP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00849">
        <property type="entry name" value="Lactamase_B"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56281">
        <property type="entry name" value="SSF56281"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Lactamase_B" evidence="1">
        <location>
            <begin position="28"/>
            <end position="220"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="SMART" id="SM00849"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX38213.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="275" mass="30932" checksum="5AACB23B84D7AB0D" modified="2008-01-15" version="1">MPVELYRDKNHACLMFTDLIEEDGQAIQANQFLIVDDDTGAIIDPGGNLAFNELFMGMSRHFAPHKLSYLIASHADPDIIASLDRWMTSTKAQLVISRIWERFAPHFTKVGKTENRVIGVPDAGGRLPLGRHELHLLPAHFLHAEGNFHFYDPVSRILFTGDLGVSLMNGIEAQVPVTDLVPHIARMEGFHRRYMVSNKILRLWVQMARQLPIDMIVPQHGAPIMGAKAIADLFNWLEGLQCGIDLFDQRNYQLPMADIDPVTRQLRPALRAVAG</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="65" xmlns="http://uniprot.org/uniprot">
    <accession>A9BXI0</accession>
    <name>A9BXI0_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="6">Porin, gram-negative type</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ordered locus">Daci_5627</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="7" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX38256.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012207425.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_5627"/>
    <dbReference type="PRIDE" id="A9BXI0"/>
    <dbReference type="EnsemblBacteria" id="ABX38256">
        <property type="protein sequence ID" value="ABX38256"/>
        <property type="gene ID" value="Daci_5627"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_5627"/>
    <dbReference type="eggNOG" id="COG3203">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_038238_1_1_4"/>
    <dbReference type="OMA" id="FIRHALA"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046930">
        <property type="term" value="C:pore complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015288">
        <property type="term" value="F:porin activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006811">
        <property type="term" value="P:ion transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd00342">
        <property type="entry name" value="gram_neg_porins"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.160.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR033900">
        <property type="entry name" value="Gram_neg_porin_domain"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023614">
        <property type="entry name" value="Porin_dom_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13609">
        <property type="entry name" value="Porin_4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0406">Ion transport</keyword>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-0626">Porin</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4" id="KW-0732">Signal</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1134">Transmembrane beta strand</keyword>
    <keyword evidence="3" id="KW-0813">Transport</keyword>
    <feature type="signal peptide" evidence="4">
        <location>
            <begin position="1"/>
            <end position="20"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5002732638" evidence="4">
        <location>
            <begin position="21"/>
            <end position="372"/>
        </location>
    </feature>
    <feature type="domain" description="Porin_4" evidence="5">
        <location>
            <begin position="10"/>
            <end position="334"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022452"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023065"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023114"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="Pfam" id="PF13609"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="ABX38256.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="372" mass="38435" checksum="0979A169087461E0" modified="2008-01-15" version="1">MQVFIRHALAASLGVAAAHAGAQSSVSISGTVDVSVRQVRNQGLGTVTSQASGANSTSKLVLRGQEDLGDGLSAGFYLDGSLLADTGAMGASGPFWDRRSTVSLASRQWGELRLGRDWVPTHLVWSGFDPFATLGIGSANGFRSFTASRALGQAFGTAPESQAANPTLRVSNAVEYFLPAGLGGLQGVSGSLIATLGEKGATAAGQTRGNGFRLGWAGAGWNVAGAQFTTRNTLSGIHFKDQSYGVSYDFGWLKASLAQRRWVHGVDRTVNTLVGMSVPVGSGVVKLSYVKADQTGATAAQSASDADLWALGYVHSLSRRTALYAHAARMSNRNGAAFAIAGGVAVSGNPAAANYFGGRASTAFELGIRHDF</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="65" xmlns="http://uniprot.org/uniprot">
    <accession>A9BXW7</accession>
    <name>A9BXW7_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Peptidase dimerisation domain protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ordered locus">Daci_1258</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="5" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX33902.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012203188.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_1258"/>
    <dbReference type="PRIDE" id="A9BXW7"/>
    <dbReference type="EnsemblBacteria" id="ABX33902">
        <property type="protein sequence ID" value="ABX33902"/>
        <property type="gene ID" value="Daci_1258"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_1258"/>
    <dbReference type="eggNOG" id="COG0624">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_029469_2_1_4"/>
    <dbReference type="OMA" id="HITIPGF"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016787">
        <property type="term" value="F:hydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002933">
        <property type="entry name" value="Peptidase_M20"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011650">
        <property type="entry name" value="Peptidase_M20_dimer"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07687">
        <property type="entry name" value="M20_dimer"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01546">
        <property type="entry name" value="Peptidase_M20"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="2">
        <location>
            <begin position="1"/>
            <end position="27"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5002732646" evidence="2">
        <location>
            <begin position="28"/>
            <end position="513"/>
        </location>
    </feature>
    <feature type="domain" description="M20_dimer" evidence="3">
        <location>
            <begin position="240"/>
            <end position="392"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF07687"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="ABX33902.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="513" mass="55453" checksum="3E5BAD49ECB1665C" modified="2008-01-15" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="57" xmlns="http://uniprot.org/uniprot">
    <accession>A9BXX7</accession>
    <name>A9BXX7_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ordered locus">Daci_1268</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="5" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Periplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the UPF0065 (bug) family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX33912.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_1268"/>
    <dbReference type="PRIDE" id="A9BXX7"/>
    <dbReference type="EnsemblBacteria" id="ABX33912">
        <property type="protein sequence ID" value="ABX33912"/>
        <property type="gene ID" value="Daci_1268"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_1268"/>
    <dbReference type="eggNOG" id="COG3181">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_045683_0_0_4"/>
    <dbReference type="OMA" id="GHIAGEM"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0042597">
        <property type="term" value="C:periplasmic space"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.190.150">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005064">
        <property type="entry name" value="BUG"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR042100">
        <property type="entry name" value="Bug_dom1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR42928">
        <property type="entry name" value="PTHR42928"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03401">
        <property type="entry name" value="TctC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF017082">
        <property type="entry name" value="YflP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="3">
        <location>
            <begin position="1"/>
            <end position="27"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004418"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00006987"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="ABX33912.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="360" mass="38850" checksum="54559791476DC338" modified="2008-01-15" version="1">MTPRHDANRAMSRHARAPAPAGPQPSARLARRSLLAALAALPWLPAAAQAQQPSAAQTRDAKSDSLTLIVPYAAGGPLDRTARPLVEASTAKLGAIQILYVPGDGGAKGSNMVAQATAQDRLLLMGAAATHAVLPWLQPQLGYDPLRDFQPLVLVARMPNVLVMRSDLARQWRIRTPLDLQRFLAKHRQPLRYASGGPGSSGHLSGEMYQMLTRLPLLHLPFGGTQPALSALLDGSADLLFDSLASSLPHIRAGRLQALAVTTLERAPLLPEVPSLNDTVQGFNMANWFGLFAPASWPAEQAQRHAAAFSQAMRSRPVQDTLSAMGALPEELQLQEFARFVRSEHSKYGLLVQAARIRQL</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="79" xmlns="http://uniprot.org/uniprot">
    <accession>A9BY95</accession>
    <name>A9BY95_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Transcriptional regulator, LysR family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Daci_1590</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="4" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the LysR transcriptional regulatory family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX34234.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012203519.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_1590"/>
    <dbReference type="PRIDE" id="A9BY95"/>
    <dbReference type="EnsemblBacteria" id="ABX34234">
        <property type="protein sequence ID" value="ABX34234"/>
        <property type="gene ID" value="Daci_1590"/>
    </dbReference>
    <dbReference type="GeneID" id="60686127"/>
    <dbReference type="KEGG" id="dac:Daci_1590"/>
    <dbReference type="eggNOG" id="COG0583">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_039613_6_0_4"/>
    <dbReference type="OMA" id="MMRELIR"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003700">
        <property type="term" value="F:DNA-binding transcription factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005119">
        <property type="entry name" value="LysR_subst-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000847">
        <property type="entry name" value="Tscrpt_reg_HTH_LysR"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036390">
        <property type="entry name" value="WH_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00126">
        <property type="entry name" value="HTH_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03466">
        <property type="entry name" value="LysR_substrate"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00039">
        <property type="entry name" value="HTHLYSR"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46785">
        <property type="entry name" value="SSF46785"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50931">
        <property type="entry name" value="HTH_LYSR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HTH lysR-type" evidence="2">
        <location>
            <begin position="1"/>
            <end position="58"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00009437"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS50931"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ABX34234.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="302" mass="32774" checksum="273E065E90F43680" modified="2008-01-15" version="1">MHARVLRYLDEVVRRGSIRKAAEHLHVAPTAVNRQILDLEAELGTPLFERIHKRLRLTPTGEMVLAHVRATLREHAALRERIAELQGARSGEITVAATTGLAGSLLPSLVHEFRQRHPGIVVRIIDLPLSDIAAAVEGGDADLGLAYDLSERPALRALATSEWQIGAIVPPRHALARQSSVLLSECIGHPLILPAPPLSIRSLLDEAFARNAIEVTPVAESTSMALIQRLVMLGEGIALLNPLDVMEERSRNALVFVPLRDAHLRRQTLVLTGRARGQLSAAGELMAQSIGQALARLFAGGR</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="54" xmlns="http://uniprot.org/uniprot">
    <accession>A9BYD6</accession>
    <name>A9BYD6_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Terminase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Daci_1631</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="2" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX34275.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012203560.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_1631"/>
    <dbReference type="PRIDE" id="A9BYD6"/>
    <dbReference type="EnsemblBacteria" id="ABX34275">
        <property type="protein sequence ID" value="ABX34275"/>
        <property type="gene ID" value="Daci_1631"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_1631"/>
    <dbReference type="eggNOG" id="COG4626">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_026632_6_0_4"/>
    <dbReference type="OMA" id="CGIIDEY"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005021">
        <property type="entry name" value="Terminase_largesu_Lambdalike"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR41287">
        <property type="entry name" value="PTHR41287"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03354">
        <property type="entry name" value="Terminase_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ABX34275.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="586" mass="65295" checksum="022CC2C63658BD7B" modified="2008-01-15" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="47" xmlns="http://uniprot.org/uniprot">
    <accession>A9BYP1</accession>
    <name>A9BYP1_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Daci_1944</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="2" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX34584.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_1944"/>
    <dbReference type="PRIDE" id="A9BYP1"/>
    <dbReference type="EnsemblBacteria" id="ABX34584">
        <property type="protein sequence ID" value="ABX34584"/>
        <property type="gene ID" value="Daci_1944"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_1944"/>
    <dbReference type="eggNOG" id="ENOG5033BMM">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_2245533_0_0_4"/>
    <dbReference type="OMA" id="YSSAWRQ"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ABX34584.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="104" mass="12212" checksum="DBCB4793E59998D2" modified="2008-01-15" version="1">MEQVPDERLQQRIYDANRAREVLENEAFSGAFVAIESEVIEEWKKSPARDAEGREKLWAYLQLLKKVRTHLESTMKDGQIAELDLNHNRSLRQRVKDGWDSLTE</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="92" xmlns="http://uniprot.org/uniprot">
    <accession>A9BYR2</accession>
    <name>A9BYR2_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Transcriptional regulator, AraC family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Daci_2167</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="4" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX34807.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012204090.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_2167"/>
    <dbReference type="PRIDE" id="A9BYR2"/>
    <dbReference type="EnsemblBacteria" id="ABX34807">
        <property type="protein sequence ID" value="ABX34807"/>
        <property type="gene ID" value="Daci_2167"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_2167"/>
    <dbReference type="eggNOG" id="COG1917">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="eggNOG" id="COG4977">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_000445_88_16_4"/>
    <dbReference type="OMA" id="TDQPHLN"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003700">
        <property type="term" value="F:DNA-binding transcription factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043565">
        <property type="term" value="F:sequence-specific DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003313">
        <property type="entry name" value="AraC-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009057">
        <property type="entry name" value="Homeobox-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037923">
        <property type="entry name" value="HTH-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018060">
        <property type="entry name" value="HTH_AraC"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018062">
        <property type="entry name" value="HTH_AraC-typ_CS"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02311">
        <property type="entry name" value="AraC_binding"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12833">
        <property type="entry name" value="HTH_18"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00342">
        <property type="entry name" value="HTH_ARAC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46689">
        <property type="entry name" value="SSF46689"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51215">
        <property type="entry name" value="SSF51215"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00041">
        <property type="entry name" value="HTH_ARAC_FAMILY_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01124">
        <property type="entry name" value="HTH_ARAC_FAMILY_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HTH araC/xylS-type" evidence="2">
        <location>
            <begin position="163"/>
            <end position="260"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS01124"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ABX34807.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="261" mass="27969" checksum="587D29ACA8F93038" modified="2008-01-15" version="1">MTSTSPHRFHRHPAAPWAELRDSARSPHCFRLHMHAEYSIGIVDAGRTVFHHAHGPQPVEAGGVVLIEPGAWHACNPDPGAPWSYRMLFVDADWLHARLGVAALRFPRRTLTDADIASLVDGLCRPVDGTAAADRLALGLEHLLDRCAQPAALPLPGDAAALAPALQRLHAGPDAGLTVQSLAQECGMSATRFIRRFKAATGMTPGSYRLNLRINGARRLLATGAALSEAAYAMGFADQAHLQRAFKAHHALTPGCYARGA</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-05-25" version="59" xmlns="http://uniprot.org/uniprot">
    <accession>A9BYR3</accession>
    <name>A9BYR3_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="6">Lysine exporter protein (LYSE/YGGA)</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ordered locus">Daci_2168</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="7" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX34808.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012204091.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_2168"/>
    <dbReference type="EnsemblBacteria" id="ABX34808">
        <property type="protein sequence ID" value="ABX34808"/>
        <property type="gene ID" value="Daci_2168"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_2168"/>
    <dbReference type="eggNOG" id="COG1280">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_079569_1_3_4"/>
    <dbReference type="OMA" id="KVWLMAV"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006865">
        <property type="term" value="P:amino acid transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001123">
        <property type="entry name" value="LeuE-type"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30086">
        <property type="entry name" value="PTHR30086"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01810">
        <property type="entry name" value="LysE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="4 5" id="KW-0472">Membrane</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 5" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="3 5" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="6"/>
            <end position="27"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="39"/>
            <end position="57"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="69"/>
            <end position="87"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="129"/>
            <end position="145"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="151"/>
            <end position="176"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="188"/>
            <end position="205"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="ABX34808.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="206" mass="21711" checksum="CA34A622D9D25409" modified="2008-01-15" version="1">MSSSLLAMGVFTLVGAITPGPVNVLALRHGAARSRLVSAAYVLGASASYAAVVWVMGQGAQWLLQTLPQLSTAAQWLCAAYLLWLAWRLANAPVGQAGAQQQAGSQRTLQALLQALLQGTAVQTLNPKAWLVALAGVGLFVLPHANAPWALLQFCAISLLACLVGVGSWALLGQLLSGWLRTERRQRLFHRLLALLLVASVAAMLA</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="82" xmlns="http://uniprot.org/uniprot">
    <accession>A9BYU3</accession>
    <name>A9BYU3_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Transcriptional regulator, LysR family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Daci_2198</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="4" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the LysR transcriptional regulatory family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX34838.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012204121.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_2198"/>
    <dbReference type="PRIDE" id="A9BYU3"/>
    <dbReference type="EnsemblBacteria" id="ABX34838">
        <property type="protein sequence ID" value="ABX34838"/>
        <property type="gene ID" value="Daci_2198"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_2198"/>
    <dbReference type="eggNOG" id="COG0583">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_039613_16_2_4"/>
    <dbReference type="OMA" id="CASPAWI"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003700">
        <property type="term" value="F:DNA-binding transcription factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005119">
        <property type="entry name" value="LysR_subst-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000847">
        <property type="entry name" value="Tscrpt_reg_HTH_LysR"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036390">
        <property type="entry name" value="WH_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00126">
        <property type="entry name" value="HTH_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03466">
        <property type="entry name" value="LysR_substrate"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46785">
        <property type="entry name" value="SSF46785"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50931">
        <property type="entry name" value="HTH_LYSR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HTH lysR-type" evidence="2">
        <location>
            <begin position="1"/>
            <end position="59"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00009437"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS50931"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ABX34838.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="311" mass="33458" checksum="61B5E1C728B909DC" modified="2008-01-15" version="1">MDDYKRMAVFAAVVQHGSMSAAARALGMSPSAVSQQVRQLERDGGVTLLHRSTRQIALTDTGERYYQQCAAMAQAASQARAELAAARDEPGGELRLSATVGFARHIAPALGHWLARHPALRLHLDVDDAPIDLIQSRIDLALRFGRLADSGWAARRLGAMRNWLCASPAWIQAQGGSAAWRHPAPLASMRWLGLAREGQGQALRAEARHPDTGETYSLQVLPHVASNNQLSIQQMCEAGLGLALLGSMDVADTVAEGRLVRLLPDWDFGGLDIWAVTPQRQAQPAKVRQAIAALQAYLARLPGVVDAPAPA</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="75" xmlns="http://uniprot.org/uniprot">
    <accession>A9BZ13</accession>
    <name>A9BZ13_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="6">Diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(S)</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ordered locus">Daci_2475</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="7" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX35113.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012204394.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_2475"/>
    <dbReference type="PRIDE" id="A9BZ13"/>
    <dbReference type="EnsemblBacteria" id="ABX35113">
        <property type="protein sequence ID" value="ABX35113"/>
        <property type="gene ID" value="Daci_2475"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_2475"/>
    <dbReference type="eggNOG" id="COG3829">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="eggNOG" id="COG5001">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_000445_70_50_4"/>
    <dbReference type="OMA" id="WIGQRET"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd01948">
        <property type="entry name" value="EAL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="CDD" id="cd01949">
        <property type="entry name" value="GGDEF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="CDD" id="cd00130">
        <property type="entry name" value="PAS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.20.20.450">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.70.270">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001633">
        <property type="entry name" value="EAL_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035919">
        <property type="entry name" value="EAL_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000160">
        <property type="entry name" value="GGDEF_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029787">
        <property type="entry name" value="Nucleotide_cyclase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000014">
        <property type="entry name" value="PAS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000700">
        <property type="entry name" value="PAS-assoc_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035965">
        <property type="entry name" value="PAS-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043128">
        <property type="entry name" value="Rev_trsase/Diguanyl_cyclase"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00563">
        <property type="entry name" value="EAL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00990">
        <property type="entry name" value="GGDEF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13426">
        <property type="entry name" value="PAS_9"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00052">
        <property type="entry name" value="EAL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00267">
        <property type="entry name" value="GGDEF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00091">
        <property type="entry name" value="PAS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF141868">
        <property type="entry name" value="SSF141868"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55073">
        <property type="entry name" value="SSF55073"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55785">
        <property type="entry name" value="SSF55785"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00254">
        <property type="entry name" value="GGDEF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00229">
        <property type="entry name" value="sensory_box"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50883">
        <property type="entry name" value="EAL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50887">
        <property type="entry name" value="GGDEF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50113">
        <property type="entry name" value="PAC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50112">
        <property type="entry name" value="PAS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="12"/>
            <end position="35"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="47"/>
            <end position="65"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="72"/>
            <end position="90"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="119"/>
            <end position="136"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="151"/>
            <end position="171"/>
        </location>
    </feature>
    <feature type="domain" description="PAS" evidence="2">
        <location>
            <begin position="195"/>
            <end position="240"/>
        </location>
    </feature>
    <feature type="domain" description="PAC" evidence="3">
        <location>
            <begin position="266"/>
            <end position="320"/>
        </location>
    </feature>
    <feature type="domain" description="GGDEF" evidence="5">
        <location>
            <begin position="356"/>
            <end position="498"/>
        </location>
    </feature>
    <feature type="domain" description="EAL" evidence="4">
        <location>
            <begin position="507"/>
            <end position="760"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS50112"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="PROSITE" id="PS50113"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="PROSITE" id="PS50883"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="PROSITE" id="PS50887"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="ABX35113.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="763" mass="84669" checksum="A6D6C6F95A077222" modified="2008-01-15" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="66" xmlns="http://uniprot.org/uniprot">
    <accession>A9BZ83</accession>
    <name>A9BZ83_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Extracellular solute-binding protein, family 1</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Daci_2545</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="2" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX35183.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012204462.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_2545"/>
    <dbReference type="PRIDE" id="A9BZ83"/>
    <dbReference type="EnsemblBacteria" id="ABX35183">
        <property type="protein sequence ID" value="ABX35183"/>
        <property type="gene ID" value="Daci_2545"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_2545"/>
    <dbReference type="eggNOG" id="COG0725">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_079071_1_0_4"/>
    <dbReference type="OMA" id="DLHVMSS"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006311">
        <property type="entry name" value="TAT_signal"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51318">
        <property type="entry name" value="TAT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ABX35183.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="283" mass="29440" checksum="9680B737C404B3A0" modified="2008-01-15" version="1">MTAIRSTPLQSSVPSTLRRRTLGALLGGALSLGLGLALGAATPSTAAADEIRVVTSGGFSAAYDQLIPLYEQATGHKVVTSRGASMGNAQDSIPSRLARGEQFDIVILADGALDNLAAQGKVEAGSRVDLARSMIGMSVRKGTPKPDISTVDALKQTLLDAKTIAYSASASGTYLANELFPRLGVAEQMKGKATRILSERVGAVVLRGDADIGFQQVSELLPFKELEFVGPLPDEVQQRVFFSAGVATGAKSPETARHLIRFLAAPAAAPIVRSTGMEPAAKP</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="95" xmlns="http://uniprot.org/uniprot">
    <accession>A9BZB5</accession>
    <name>A9BZB5_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="7">UvrABC system protein C</fullName>
            <shortName evidence="7">Protein UvrC</shortName>
        </recommendedName>
        <alternativeName>
            <fullName evidence="7">Excinuclease ABC subunit C</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="7" type="primary">uvrC</name>
        <name evidence="11" type="ordered locus">Daci_2877</name>
    </gene>
    <organism evidence="11 12">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="11 12" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="12">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="12" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="12">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="7">The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5' and 3' sides of the lesion. The N-terminal half is responsible for the 3' incision and the C-terminal half is responsible for the 5' incision.</text>
    </comment>
    <comment type="subunit">
        <text evidence="7">Interacts with UvrB in an incision complex.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="7">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="7">Belongs to the UvrC family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX35515.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012204725.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_2877"/>
    <dbReference type="PRIDE" id="A9BZB5"/>
    <dbReference type="EnsemblBacteria" id="ABX35515">
        <property type="protein sequence ID" value="ABX35515"/>
        <property type="gene ID" value="Daci_2877"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_2877"/>
    <dbReference type="eggNOG" id="COG0322">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_014841_3_0_4"/>
    <dbReference type="OMA" id="HIECFDN"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009380">
        <property type="term" value="C:excinuclease repair complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009381">
        <property type="term" value="F:excinuclease ABC activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006289">
        <property type="term" value="P:nucleotide-excision repair"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009432">
        <property type="term" value="P:SOS response"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.420.340">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.1440.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00203">
        <property type="entry name" value="UvrC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000305">
        <property type="entry name" value="GIY-YIG_endonuc"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035901">
        <property type="entry name" value="GIY-YIG_endonuc_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003583">
        <property type="entry name" value="Hlx-hairpin-Hlx_DNA-bd_motif"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010994">
        <property type="entry name" value="RuvA_2-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001943">
        <property type="entry name" value="UVR_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036876">
        <property type="entry name" value="UVR_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004791">
        <property type="entry name" value="UvrC"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001162">
        <property type="entry name" value="UvrC_RNase_H_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038476">
        <property type="entry name" value="UvrC_RNase_H_dom_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01541">
        <property type="entry name" value="GIY-YIG"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02151">
        <property type="entry name" value="UVR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08459">
        <property type="entry name" value="UvrC_HhH_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00465">
        <property type="entry name" value="GIYc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00278">
        <property type="entry name" value="HhH1"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46600">
        <property type="entry name" value="SSF46600"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47781">
        <property type="entry name" value="SSF47781"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF82771">
        <property type="entry name" value="SSF82771"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00194">
        <property type="entry name" value="uvrC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50164">
        <property type="entry name" value="GIY_YIG"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50151">
        <property type="entry name" value="UVR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50165">
        <property type="entry name" value="UVRC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="1 7" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="2 7" id="KW-0227">DNA damage</keyword>
    <keyword evidence="3 7" id="KW-0228">DNA excision</keyword>
    <keyword evidence="5 7" id="KW-0234">DNA repair</keyword>
    <keyword evidence="4 7" id="KW-0267">Excision nuclease</keyword>
    <keyword evidence="12" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="6 7" id="KW-0742">SOS response</keyword>
    <feature type="domain" description="GIY-YIG" evidence="9">
        <location>
            <begin position="18"/>
            <end position="96"/>
        </location>
    </feature>
    <feature type="domain" description="UVR" evidence="8">
        <location>
            <begin position="218"/>
            <end position="253"/>
        </location>
    </feature>
    <feature type="domain" description="UVRC" evidence="10">
        <location>
            <begin position="269"/>
            <end position="523"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022490"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022763"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022769"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022881"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023204"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023236"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00203"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="PROSITE" id="PS50151"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="9">
        <source>
            <dbReference type="PROSITE" id="PS50164"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="10">
        <source>
            <dbReference type="PROSITE" id="PS50165"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="EMBL" id="ABX35515.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="650" mass="72009" checksum="7FECD5AFEAD583A5" modified="2008-01-15" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="61" xmlns="http://uniprot.org/uniprot">
    <accession>A9BZH0</accession>
    <name>A9BZH0_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Xylose isomerase domain protein TIM barrel</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_2932</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX35570.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012204780.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_2932"/>
    <dbReference type="PRIDE" id="A9BZH0"/>
    <dbReference type="EnsemblBacteria" id="ABX35570">
        <property type="protein sequence ID" value="ABX35570"/>
        <property type="gene ID" value="Daci_2932"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_2932"/>
    <dbReference type="eggNOG" id="COG1082">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_059523_0_0_4"/>
    <dbReference type="OMA" id="VHCKDIR"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016853">
        <property type="term" value="F:isomerase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR030823">
        <property type="entry name" value="IolE/MocC"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036237">
        <property type="entry name" value="Xyl_isomerase-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013022">
        <property type="entry name" value="Xyl_isomerase-like_TIM-brl"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01261">
        <property type="entry name" value="AP_endonuc_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51658">
        <property type="entry name" value="SSF51658"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR04379">
        <property type="entry name" value="myo_inos_iolE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0413">Isomerase</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="AP_endonuc_2" evidence="1">
        <location>
            <begin position="33"/>
            <end position="302"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF01261"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX35570.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="308" mass="33506" checksum="4BCE084387C647DF" modified="2008-01-15" version="1">MTWKVRIGINPLSWMNDDLPSLGGDTPLDTALKEGAEIGYAGFELGNKFPKTGPALKARLDAHGLACVSGWYSGFLAQADAGSDAQAIAAEAERCKPHMDRLRHNGVDVVVYGECAGTVQGQIGTPVSRRPRFADDAAWQRYAWRLDAFGAHLLECYGIRLAYHHHMGAHVESPQDVDRLMALTDPRKVFLLFDTGHAYYGGAADPAALLKKHVARVAHVHCKDVRPQVIAQARQGDWSFLQGVVNGIFTVPGDGALDFEAVLRTLRDAGYQGWLVVEAEQDPAIAPGYAYAKKGYETLRALVDRLGA</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="67" xmlns="http://uniprot.org/uniprot">
    <accession>A9BZH1</accession>
    <name>A9BZH1_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="9">Porin Gram-negative type</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="9" type="ordered locus">Daci_2933</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="9 10" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="10" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX35571.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012204781.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_2933"/>
    <dbReference type="PRIDE" id="A9BZH1"/>
    <dbReference type="EnsemblBacteria" id="ABX35571">
        <property type="protein sequence ID" value="ABX35571"/>
        <property type="gene ID" value="Daci_2933"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_2933"/>
    <dbReference type="eggNOG" id="COG3203">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_038238_2_2_4"/>
    <dbReference type="OMA" id="VYTGIVH"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009279">
        <property type="term" value="C:cell outer membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046930">
        <property type="term" value="C:pore complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015288">
        <property type="term" value="F:porin activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0034220">
        <property type="term" value="P:ion transmembrane transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd00342">
        <property type="entry name" value="gram_neg_porins"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.160.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR033900">
        <property type="entry name" value="Gram_neg_porin_domain"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023614">
        <property type="entry name" value="Porin_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001702">
        <property type="entry name" value="Porin_Gram-ve"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002299">
        <property type="entry name" value="Porin_Neis"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13609">
        <property type="entry name" value="Porin_4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00182">
        <property type="entry name" value="ECOLNEIPORIN"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00184">
        <property type="entry name" value="NEISSPPORIN"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-0406">Ion transport</keyword>
    <keyword evidence="6" id="KW-0472">Membrane</keyword>
    <keyword evidence="5" id="KW-0626">Porin</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="7" id="KW-0732">Signal</keyword>
    <keyword evidence="3" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="2" id="KW-1134">Transmembrane beta strand</keyword>
    <keyword evidence="1" id="KW-0813">Transport</keyword>
    <feature type="signal peptide" evidence="7">
        <location>
            <begin position="1"/>
            <end position="35"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5002733189" evidence="7">
        <location>
            <begin position="36"/>
            <end position="365"/>
        </location>
    </feature>
    <feature type="domain" description="Porin_4" evidence="8">
        <location>
            <begin position="23"/>
            <end position="334"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022448"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022452"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023065"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023114"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="Pfam" id="PF13609"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="ABX35571.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="365" mass="37778" checksum="9E457FD01AC861AE" modified="2008-01-15" version="1">MTSAIHHALRGPAARATVPCLCAAALAGAASLATAQGSVTLYGRIVSGVDYMNRIAEGPGRSSDQLRHAGQWGATWWGLRGAEDLGGGLSAVFHLESQFSADDGTVGDSFFNRYAVVGLRSQTYGTLLLGRAMGIPDGEVWALDPMGLQAMGAGTLQGNRTWGSRPNAISYQSPAWGGLSFRTQLGLNGEAGRSRAGRQAAASVGYEQGPLVLKAFYEEIRDGNGAFASLYKASRLYTVGATYRVGGLKLFTGYSQIRSGALTVADADNPAGARSQQTYWMGANYQATPALVLAGGAYRANRSGGGASLVSLGANYHLSRRTMLYGTVGAVSNGGGASFSVEANSARPAPGSGQQGVYTGIVHSF</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="79" xmlns="http://uniprot.org/uniprot">
    <accession>A9BZJ6</accession>
    <name>A9BZJ6_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Flavin-containing monooxygenase, putative</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_2958</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX35596.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012204806.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_2958"/>
    <dbReference type="PRIDE" id="A9BZJ6"/>
    <dbReference type="EnsemblBacteria" id="ABX35596">
        <property type="protein sequence ID" value="ABX35596"/>
        <property type="gene ID" value="Daci_2958"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_2958"/>
    <dbReference type="eggNOG" id="COG2072">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_015676_1_0_4"/>
    <dbReference type="OMA" id="MHEFQIP"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004497">
        <property type="term" value="F:monooxygenase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.50.50.60">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036188">
        <property type="entry name" value="FAD/NAD-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR032710">
        <property type="entry name" value="NTF2-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037401">
        <property type="entry name" value="SnoaL-like"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12680">
        <property type="entry name" value="SnoaL_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51905">
        <property type="entry name" value="SSF51905"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54427">
        <property type="entry name" value="SSF54427"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0503">Monooxygenase</keyword>
    <keyword evidence="2" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="SnoaL-like" evidence="1">
        <location>
            <begin position="16"/>
            <end position="114"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF12680"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX35596.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="600" mass="67521" checksum="876F9F714204FC37" modified="2008-01-15" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="39" xmlns="http://uniprot.org/uniprot">
    <accession>A9BZK8</accession>
    <name>A9BZK8_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Daci_3278</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="2" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX35916.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012205116.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="PRIDE" id="A9BZK8"/>
    <dbReference type="EnsemblBacteria" id="ABX35916">
        <property type="protein sequence ID" value="ABX35916"/>
        <property type="gene ID" value="Daci_3278"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_3278"/>
    <dbReference type="eggNOG" id="ENOG5033I9W">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_161888_1_0_4"/>
    <dbReference type="OMA" id="CRTHEPV"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ABX35916.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="123" mass="13196" checksum="F34FEB8A066BFADD" modified="2008-01-15" version="1">MNPAQPKSATDSHTTRQLSNALTQVDHLVQQGCAEISSIAQLALAWLETPKGHRHMDVVARALQSIRDSAETLADYAGTEAQAMGCGFEDAAEMRRAEAAEAAAKAMAQLLDCRTHEPVRPQG</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="63" xmlns="http://uniprot.org/uniprot">
    <accession>A9BZR8</accession>
    <name>A9BZR8_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Phosphonate ABC transporter, periplasmic phosphonate-binding protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ordered locus">Daci_3338</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="6" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the phosphate/phosphite/phosphonate binding protein family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX35976.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012205176.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_3338"/>
    <dbReference type="PRIDE" id="A9BZR8"/>
    <dbReference type="EnsemblBacteria" id="ABX35976">
        <property type="protein sequence ID" value="ABX35976"/>
        <property type="gene ID" value="Daci_3338"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_3338"/>
    <dbReference type="eggNOG" id="COG3221">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_051472_6_2_4"/>
    <dbReference type="OMA" id="QVQLAWF"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043190">
        <property type="term" value="C:ATP-binding cassette (ABC) transporter complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0055085">
        <property type="term" value="P:transmembrane transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR030836">
        <property type="entry name" value="ABC_peri_PhnD-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005770">
        <property type="entry name" value="PhnD"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001638">
        <property type="entry name" value="Solute-binding_3/MltF_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006311">
        <property type="entry name" value="TAT_signal"/>
    </dbReference>
    <dbReference type="SMART" id="SM00062">
        <property type="entry name" value="PBPb"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01098">
        <property type="entry name" value="3A0109s03R"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR04553">
        <property type="entry name" value="ABC_peri_selen"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51318">
        <property type="entry name" value="TAT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 3" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="3">
        <location>
            <begin position="1"/>
            <end position="31"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5002736022" evidence="3">
        <location>
            <begin position="32"/>
            <end position="294"/>
        </location>
    </feature>
    <feature type="domain" description="PBPb" evidence="4">
        <location>
            <begin position="36"/>
            <end position="270"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00007162"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022729"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="SMART" id="SM00062"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="ABX35976.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="294" mass="31555" checksum="72F008663C98396A" modified="2008-01-15" version="1">MNHIPARRSALRQAAACVLAASTLSSLPALAAEPAVLRVSAIPDEAPTELQRKFEPLGKYLSAQTGMKVVFTPVTDYAAVVESLATRKLDLAWLGGFTFVQAKIRTNGTAIPIVQREEDAKFTSKFITANPAIKTLADLKGKSFAFGAPSSTSGSLMPRFFLQQDGINPEKDFKTVAFSGAHDATVAFVAAGKAEAGVLNASVWDKLVETKKVDTSKVRVFATTPPYFDYNWTVRGDLDPALVKKLTDAFLALDPAKPEHKAILELQRAARFVPTQASNYEGIEAAAKSAGLLK</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="74" xmlns="http://uniprot.org/uniprot">
    <accession>A9BZT4</accession>
    <name>A9BZT4_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Transcriptional regulator, Fis family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Daci_3354</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="4" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX35992.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_3354"/>
    <dbReference type="PRIDE" id="A9BZT4"/>
    <dbReference type="EnsemblBacteria" id="ABX35992">
        <property type="protein sequence ID" value="ABX35992"/>
        <property type="gene ID" value="Daci_3354"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_3354"/>
    <dbReference type="eggNOG" id="COG3284">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_643948_0_0_4"/>
    <dbReference type="OMA" id="QHDPRWL"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043565">
        <property type="term" value="F:sequence-specific DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.450.40">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029016">
        <property type="entry name" value="GAF-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009057">
        <property type="entry name" value="Homeobox-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002197">
        <property type="entry name" value="HTH_Fis"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02954">
        <property type="entry name" value="HTH_8"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR01590">
        <property type="entry name" value="HTHFIS"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46689">
        <property type="entry name" value="SSF46689"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="1" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HTH_8" evidence="2">
        <location>
            <begin position="349"/>
            <end position="389"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF02954"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ABX35992.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="392" mass="42128" checksum="4DBFEF013DF5AEC6" modified="2008-01-15" version="1">MMSVMQQPPPAPLPSNPFYATRQDRVALARERYFERGERPSGLVSEPVLQSWTRCLGASRSPDEKISFDPVSKIRTATLLTHNRALIEAVRDPIAELETVIAGSQARAMLTCSEGVVLIASRPTPGDGPLLLTAARVGVNIAEDAVGTGAPGVAVRTGEVCHVRGGEHFFRCLASLHCAAAPVRDASGRTVAMLDLSSEAGPFRFDAGAMAHMYATCIENRLLVGAARMHLLLRFQSSRSMFGTPLEGLAAVDGEGMVRWFNGVGAQLFDSPRRPAEGLAAEEVFGLGLNQLLELAHHGQARPQMLPTGLTLWMEARLDEASSQIEEVLPAIEALPPPAEAPSEAPSSLGEASRELIEQALARCQGNISQAARMLGVSRGLLYRRLREWGRA</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="68" xmlns="http://uniprot.org/uniprot">
    <accession>A9C0A3</accession>
    <name>A9C0A3_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="6">Cys/Met metabolism pyridoxal-phosphate-dependent protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ordered locus">Daci_4038</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="7" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>H2O + L,L-cystathionine = L-homocysteine + NH4(+) + pyruvate</text>
            <dbReference type="Rhea" id="RHEA:13965"/>
            <dbReference type="ChEBI" id="CHEBI:15361"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:28938"/>
            <dbReference type="ChEBI" id="CHEBI:58161"/>
            <dbReference type="ChEBI" id="CHEBI:58199"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="2 5">
            <name>pyridoxal 5'-phosphate</name>
            <dbReference type="ChEBI" id="CHEBI:597326"/>
        </cofactor>
    </comment>
    <comment type="similarity">
        <text evidence="3 5">Belongs to the trans-sulfuration enzymes family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX36669.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_4038"/>
    <dbReference type="PRIDE" id="A9C0A3"/>
    <dbReference type="EnsemblBacteria" id="ABX36669">
        <property type="protein sequence ID" value="ABX36669"/>
        <property type="gene ID" value="Daci_4038"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_4038"/>
    <dbReference type="eggNOG" id="COG0626">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_018986_5_1_4"/>
    <dbReference type="OMA" id="VALDNTY"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004121">
        <property type="term" value="F:cystathionine beta-lyase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030170">
        <property type="term" value="F:pyridoxal phosphate binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0019346">
        <property type="term" value="P:transsulfuration"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.640.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.1150.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000277">
        <property type="entry name" value="Cys/Met-Metab_PyrdxlP-dep_enz"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006233">
        <property type="entry name" value="Cys_b_lyase_bac"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015424">
        <property type="entry name" value="PyrdxlP-dep_Trfase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015421">
        <property type="entry name" value="PyrdxlP-dep_Trfase_major"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015422">
        <property type="entry name" value="PyrdxlP-dep_Trfase_small"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43500">
        <property type="entry name" value="PTHR43500"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01053">
        <property type="entry name" value="Cys_Met_Meta_PP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF001434">
        <property type="entry name" value="CGS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53383">
        <property type="entry name" value="SSF53383"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4 5" id="KW-0663">Pyridoxal phosphate</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <feature type="modified residue" description="N6-(pyridoxal phosphate)lysine" evidence="4">
        <location>
            <position position="230"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001535"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00001933"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00009077"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="PIRSR" id="PIRSR001434-2"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="RuleBase" id="RU362118"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="ABX36669.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="422" mass="45621" checksum="0707EDA66EAFF94F" modified="2008-01-15" version="1">MPERRCPAHKMRCMSTPDLQISTHLIHHPYQPPEGFVAPQPPVHKASTVIFENVAAMRRRQWLDKSSYTYGLHGTPTTFLLEERLSALEGGLQCLLVPSGLAAIATTSLALLRTGDEMLLPDNAYGPNKTLSEGELAHFGVRHQCYDAMDVAGLEAKITPKTRLVWLEAPGSVTMEFPDLIAMVRLCRARGITTVLDNTWGAGLAFNPFDLLGDGSHSLGVDATVHALTKYPSGGGDVLMGSIITRDQALHMRIKLAHMRLGLGVGGNDTEAVLRSLPSIALRYHAQDRAARELARWLQQQPAVVQVLHPALEGAPGHENWKALCGAAGGGEGVAAGLFSVVIDPRHGQQAVDRFCDSLRLFKIGYSWGGPISLVVPYELPSMRSCPTPQLRSGTVVRFAIGLEAVQDLRADLEQALAAAFA</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-01-19" version="66" xmlns="http://uniprot.org/uniprot">
    <accession>A9C0P3</accession>
    <name>A9C0P3_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="7">Inner-membrane translocator</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ordered locus">Daci_4487</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="8" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX37116.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012206286.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_4487"/>
    <dbReference type="EnsemblBacteria" id="ABX37116">
        <property type="protein sequence ID" value="ABX37116"/>
        <property type="gene ID" value="Daci_4487"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_4487"/>
    <dbReference type="eggNOG" id="COG0559">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_039929_2_1_4"/>
    <dbReference type="OMA" id="MPEFGEF"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0022857">
        <property type="term" value="F:transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001851">
        <property type="entry name" value="ABC_transp_permease"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02653">
        <property type="entry name" value="BPD_transp_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="5 6" id="KW-0472">Membrane</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 6" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="4 6" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="16"/>
            <end position="40"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="60"/>
            <end position="85"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="97"/>
            <end position="115"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="142"/>
            <end position="162"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="188"/>
            <end position="212"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="224"/>
            <end position="251"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="272"/>
            <end position="296"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="ABX37116.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="306" mass="31977" checksum="590DBDB8EB123DA0" modified="2008-01-15" version="1">MTWTLLLEQLLNGLQFGLMLFLIAAGLTLVFGIMDIMNLAHGSLYMAGAYVAAETMQRTGSFTAAVLVAAVATGVAGVVLELVLIRRLAVRDHLAQVLGSYAVILIANDLVKMVWGPAPVMLNMPAALSGPVQLLPELMYPAYRLMIIVFGLAAALGLYWFVTRTRAGVLVRAGASNRQMATLMGVRVPLLFLGVFTLGAMLAAVAGALLGPITSVQVGMGEDILILVLVCIVIGGIGSIRGALVGALLVGMVDTAGRAFLPMLLRQVFSPAVASSVGPTLAAISIYVLMAVVLVYRPSGLFPARG</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="79" xmlns="http://uniprot.org/uniprot">
    <accession>A9C0P9</accession>
    <name>A9C0P9_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="10">DEAD/DEAH box helicase domain protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="10" type="ordered locus">Daci_4493</name>
    </gene>
    <organism evidence="10 11">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="10 11" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="11">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="11" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="11">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="6">Belongs to the DEAD box helicase family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX37122.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_4493"/>
    <dbReference type="PRIDE" id="A9C0P9"/>
    <dbReference type="EnsemblBacteria" id="ABX37122">
        <property type="protein sequence ID" value="ABX37122"/>
        <property type="gene ID" value="Daci_4493"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_4493"/>
    <dbReference type="eggNOG" id="COG0513">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_003041_1_3_4"/>
    <dbReference type="OMA" id="FGCQALV"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016787">
        <property type="term" value="F:hydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003676">
        <property type="term" value="F:nucleic acid binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003724">
        <property type="term" value="F:RNA helicase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.70.330">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005580">
        <property type="entry name" value="DbpA/CsdA_RNA-bd_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011545">
        <property type="entry name" value="DEAD/DEAH_box_helicase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014001">
        <property type="entry name" value="Helicase_ATP-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001650">
        <property type="entry name" value="Helicase_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012677">
        <property type="entry name" value="Nucleotide-bd_a/b_plait_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000629">
        <property type="entry name" value="RNA-helicase_DEAD-box_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014014">
        <property type="entry name" value="RNA_helicase_DEAD_Q_motif"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03880">
        <property type="entry name" value="DbpA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00270">
        <property type="entry name" value="DEAD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00271">
        <property type="entry name" value="Helicase_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00487">
        <property type="entry name" value="DEXDc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00490">
        <property type="entry name" value="HELICc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00039">
        <property type="entry name" value="DEAD_ATP_HELICASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51192">
        <property type="entry name" value="HELICASE_ATP_BIND_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51194">
        <property type="entry name" value="HELICASE_CTER"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51195">
        <property type="entry name" value="Q_MOTIF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4 6" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="3 6 10" id="KW-0347">Helicase</keyword>
    <keyword evidence="2 6" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="1 6" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="11" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Q_MOTIF" evidence="9">
        <location>
            <begin position="24"/>
            <end position="52"/>
        </location>
    </feature>
    <feature type="domain" description="Helicase ATP-binding" evidence="7">
        <location>
            <begin position="55"/>
            <end position="226"/>
        </location>
    </feature>
    <feature type="domain" description="Helicase C-terminal" evidence="8">
        <location>
            <begin position="236"/>
            <end position="396"/>
        </location>
    </feature>
    <feature type="short sequence motif" description="Q motif" evidence="5">
        <location>
            <begin position="24"/>
            <end position="52"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022806"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00552"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="RuleBase" id="RU000492"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="PROSITE" id="PS51192"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="PROSITE" id="PS51194"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="9">
        <source>
            <dbReference type="PROSITE" id="PS51195"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="EMBL" id="ABX37122.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="481" mass="51983" checksum="A0C66C60CFF586BD" modified="2008-01-15" version="1">MCASVLESPTLKCPPMTPPSASPHSFDKLALSPATLANLERLGYLEMTAIQLASLPPALEGKDVIAQAKTGSGKTAAFALALLAKLDTRNFSVQGLVLCPTRELADQVTTEIRRLARAEDNVKVVTLSGGVPLRGQNASLENGAHVIVGTPGRVIDHLDRGNLNLDSLNTLVLDEADRMLDMGFVDDIAKVAKQCPPQRQTLLFSATYPEGIAKLAARFMRDPVTVKVAAQHSGEQIEQRWYEVDKEERLPSVARLLEHFRPESTLAFCNTKARCRALAELLQAQGYSALELHGDLEQRDRDQVLVRFVNGSCSVLVATDVAARGLDVTNLGAVINVDITPDPEVHVHRIGRTGRAGQKGLALSLATMDEMGAVGNIEQMQGSPSVWYPLDELTPAPGGRLLPSKATIHINASRKDKIRPGDVLGALTADLGYTREQVGKIDINEFATYVAVDRKIAHDVVARLNSGKIKGRTVKARLLKD</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="78" xmlns="http://uniprot.org/uniprot">
    <accession>A9C0U4</accession>
    <name>A9C0U4_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Short-chain dehydrogenase/reductase SDR</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_5779</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the short-chain dehydrogenases/reductases (SDR) family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX38407.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012207576.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_5779"/>
    <dbReference type="PRIDE" id="A9C0U4"/>
    <dbReference type="EnsemblBacteria" id="ABX38407">
        <property type="protein sequence ID" value="ABX38407"/>
        <property type="gene ID" value="Daci_5779"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_5779"/>
    <dbReference type="eggNOG" id="COG0300">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_010194_2_1_4"/>
    <dbReference type="OMA" id="AEMVMEV"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016491">
        <property type="term" value="F:oxidoreductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036291">
        <property type="entry name" value="NAD(P)-bd_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020904">
        <property type="entry name" value="Sc_DH/Rdtase_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002347">
        <property type="entry name" value="SDR_fam"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00106">
        <property type="entry name" value="adh_short"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00081">
        <property type="entry name" value="GDHRDH"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00080">
        <property type="entry name" value="SDRFAMILY"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51735">
        <property type="entry name" value="SSF51735"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00061">
        <property type="entry name" value="ADH_SHORT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="RuleBase" id="RU000363"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX38407.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="268" mass="27785" checksum="45DED980DF4C7E81" modified="2008-01-15" version="1">MSTHQGTAIVTGASSGIGAVYADRLAARGHSLILVARREDRLQALAQRLRSAHGREVEVVAADLADAAGLQRVAALLSGERDIRMLVNCAGLGALGPAAQVDAGEVDRMVMVNIHALTRLSLAAARLFATRGRGTLINIGSILAVMPVPGASSYGASKAYVLNFTRSLQAELASSGVMVQAVMPSLVHSEFFGGKPAPFPAHLFMSPESLVDTALVALDQGEAICFPTLGSTTAWLDFDQSRANLVKALTLSGVPAARYQGADAGQPA</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2021-06-02" version="30" xmlns="http://uniprot.org/uniprot">
    <accession>A9C0V1</accession>
    <name>A9C0V1_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_5786</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX38414.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_5786"/>
    <dbReference type="EnsemblBacteria" id="ABX38414">
        <property type="protein sequence ID" value="ABX38414"/>
        <property type="gene ID" value="Daci_5786"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_5786"/>
    <dbReference type="HOGENOM" id="CLU_2665064_0_0_4"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="26"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="1"/>
            <end position="15"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX38414.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="79" mass="7798" checksum="26C2A220CDE9B75E" modified="2008-01-15" version="1">MSLLPSSSAPRTPASTPGRTPRRLKPATVARRCVGSLILLAGAVILTGDLVALWRGAGTDAAPAAAAIAPASGVVPTAR</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="78" xmlns="http://uniprot.org/uniprot">
    <accession>A9C160</accession>
    <name>A9C160_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="11">TonB-dependent siderophore receptor</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="11" type="ordered locus">Daci_5895</name>
    </gene>
    <organism evidence="11 12">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="11 12" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="12">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="12" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="12">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="8">Cell outer membrane</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="1 8">Belongs to the TonB-dependent receptor family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX38523.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012207692.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_5895"/>
    <dbReference type="PRIDE" id="A9C160"/>
    <dbReference type="EnsemblBacteria" id="ABX38523">
        <property type="protein sequence ID" value="ABX38523"/>
        <property type="gene ID" value="Daci_5895"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_5895"/>
    <dbReference type="eggNOG" id="COG4773">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_008287_9_4_4"/>
    <dbReference type="OMA" id="HEDEDYW"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009279">
        <property type="term" value="C:cell outer membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015344">
        <property type="term" value="F:siderophore uptake transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0038023">
        <property type="term" value="F:signaling receptor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.170.130.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.170.20">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012910">
        <property type="entry name" value="Plug_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037066">
        <property type="entry name" value="Plug_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011662">
        <property type="entry name" value="Secretin/TonB_short_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR039423">
        <property type="entry name" value="TonB-dep_rcpt"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000531">
        <property type="entry name" value="TonB-dep_rcpt_b-brl"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036942">
        <property type="entry name" value="TonB_rcpt_b-brl_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010105">
        <property type="entry name" value="TonB_sidphr_rcpt"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR32552">
        <property type="entry name" value="PTHR32552"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07715">
        <property type="entry name" value="Plug"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00593">
        <property type="entry name" value="TonB_dep_Rec"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00965">
        <property type="entry name" value="STN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01783">
        <property type="entry name" value="TonB-siderophor"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="7" id="KW-0998">Cell outer membrane</keyword>
    <keyword evidence="5 8" id="KW-0472">Membrane</keyword>
    <keyword evidence="6 11" id="KW-0675">Receptor</keyword>
    <keyword evidence="12" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 9" id="KW-0732">Signal</keyword>
    <keyword evidence="4 8" id="KW-0798">TonB box</keyword>
    <keyword evidence="2" id="KW-0813">Transport</keyword>
    <feature type="signal peptide" evidence="9">
        <location>
            <begin position="1"/>
            <end position="25"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5002732754" evidence="9">
        <location>
            <begin position="26"/>
            <end position="827"/>
        </location>
    </feature>
    <feature type="domain" description="STN" evidence="10">
        <location>
            <begin position="64"/>
            <end position="115"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00009810"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022448"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022729"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023077"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023170"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023237"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="RuleBase" id="RU003357"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="10">
        <source>
            <dbReference type="SMART" id="SM00965"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="EMBL" id="ABX38523.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="827" mass="88575" checksum="259CA195995FA0F9" modified="2008-01-15" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="58" xmlns="http://uniprot.org/uniprot">
    <accession>A9C1A1</accession>
    <name>A9C1A1_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Fimbrial protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Daci_5936</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="4" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX38564.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_5936"/>
    <dbReference type="PRIDE" id="A9C1A1"/>
    <dbReference type="EnsemblBacteria" id="ABX38564">
        <property type="protein sequence ID" value="ABX38564"/>
        <property type="gene ID" value="Daci_5936"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_5936"/>
    <dbReference type="eggNOG" id="COG3539">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_088965_0_1_4"/>
    <dbReference type="OMA" id="NGDNTIH"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009289">
        <property type="term" value="C:pilus"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0007155">
        <property type="term" value="P:cell adhesion"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.40.1090">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000259">
        <property type="entry name" value="Adhesion_dom_fimbrial"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036937">
        <property type="entry name" value="Adhesion_dom_fimbrial_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008966">
        <property type="entry name" value="Adhesion_dom_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00419">
        <property type="entry name" value="Fimbrial"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF49401">
        <property type="entry name" value="SSF49401"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="1">
        <location>
            <begin position="1"/>
            <end position="23"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5002733254" evidence="1">
        <location>
            <begin position="24"/>
            <end position="184"/>
        </location>
    </feature>
    <feature type="domain" description="Fimbrial" evidence="2">
        <location>
            <begin position="33"/>
            <end position="184"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF00419"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ABX38564.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="184" mass="19259" checksum="3A76363F8DE8625D" modified="2008-01-15" version="1">MKFSALKFSVAGLSLLALSSVHAQSTQSGIVRFTGNISPVTCIVNLGSRDQKIDFGIVPPNDRGFTSGGGAVGNVALPAHQRTITIRLDGCSTPGANNQPTTATVRFDGPIRNGRINTSNATADIQLLENNSTTAIWDLSGPSAPVNLQSGTNTLNYIARYYVAAVPLASGEANAEATFTMNYQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="87" xmlns="http://uniprot.org/uniprot">
    <accession>A9C1A6</accession>
    <name>A9C1A6_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">Bifunctional protein PutA</fullName>
        </recommendedName>
        <domain>
            <recommendedName>
                <fullName evidence="2">Proline dehydrogenase</fullName>
                <ecNumber evidence="2">1.5.5.2</ecNumber>
            </recommendedName>
            <alternativeName>
                <fullName evidence="2">Proline oxidase</fullName>
            </alternativeName>
        </domain>
        <domain>
            <recommendedName>
                <fullName evidence="2">Delta-1-pyrroline-5-carboxylate dehydrogenase</fullName>
                <shortName evidence="2">P5C dehydrogenase</shortName>
                <ecNumber evidence="2">1.2.1.88</ecNumber>
            </recommendedName>
            <alternativeName>
                <fullName evidence="2">L-glutamate gamma-semialdehyde dehydrogenase</fullName>
            </alternativeName>
        </domain>
    </protein>
    <gene>
        <name evidence="9" type="ordered locus">Daci_5941</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="9 10" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="10" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="2">Oxidizes proline to glutamate for use as a carbon and nitrogen source.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="2">
            <text>H2O + L-glutamate 5-semialdehyde + NAD(+) = 2 H(+) + L-glutamate + NADH</text>
            <dbReference type="Rhea" id="RHEA:30235"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:29985"/>
            <dbReference type="ChEBI" id="CHEBI:57540"/>
            <dbReference type="ChEBI" id="CHEBI:57945"/>
            <dbReference type="ChEBI" id="CHEBI:58066"/>
            <dbReference type="EC" id="1.2.1.88"/>
        </reaction>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="2">
            <text>a quinone + L-proline = (S)-1-pyrroline-5-carboxylate + a quinol + H(+)</text>
            <dbReference type="Rhea" id="RHEA:23784"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:17388"/>
            <dbReference type="ChEBI" id="CHEBI:24646"/>
            <dbReference type="ChEBI" id="CHEBI:60039"/>
            <dbReference type="ChEBI" id="CHEBI:132124"/>
            <dbReference type="EC" id="1.5.5.2"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="2">
            <name>FAD</name>
            <dbReference type="ChEBI" id="CHEBI:57692"/>
        </cofactor>
    </comment>
    <comment type="pathway">
        <text evidence="2">Amino-acid degradation; L-proline degradation into L-glutamate; L-glutamate from L-proline: step 1/2.</text>
    </comment>
    <comment type="pathway">
        <text evidence="2">Amino-acid degradation; L-proline degradation into L-glutamate; L-glutamate from L-proline: step 2/2.</text>
    </comment>
    <comment type="similarity">
        <text evidence="2">In the C-terminal section; belongs to the aldehyde dehydrogenase family.</text>
    </comment>
    <comment type="similarity">
        <text evidence="2">In the N-terminal section; belongs to the proline dehydrogenase family.</text>
    </comment>
    <dbReference type="EC" id="1.5.5.2" evidence="2"/>
    <dbReference type="EC" id="1.2.1.88" evidence="2"/>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX38569.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012207738.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_5941"/>
    <dbReference type="PRIDE" id="A9C1A6"/>
    <dbReference type="EnsemblBacteria" id="ABX38569">
        <property type="protein sequence ID" value="ABX38569"/>
        <property type="gene ID" value="Daci_5941"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_5941"/>
    <dbReference type="eggNOG" id="COG0506">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="eggNOG" id="COG4230">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_005682_1_1_4"/>
    <dbReference type="OMA" id="PPWNFPV"/>
    <dbReference type="UniPathway" id="UPA00261">
        <property type="reaction ID" value="UER00373"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003842">
        <property type="term" value="F:1-pyrroline-5-carboxylate dehydrogenase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003700">
        <property type="term" value="F:DNA-binding transcription factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016620">
        <property type="term" value="F:oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004657">
        <property type="term" value="F:proline dehydrogenase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006561">
        <property type="term" value="P:proline biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0010133">
        <property type="term" value="P:proline catabolic process to glutamate"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.1220.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.5.550">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.309.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.605.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016161">
        <property type="entry name" value="Ald_DH/histidinol_DH"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016163">
        <property type="entry name" value="Ald_DH_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016160">
        <property type="entry name" value="Ald_DH_CS_CYS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016162">
        <property type="entry name" value="Ald_DH_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015590">
        <property type="entry name" value="Aldehyde_DH_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013321">
        <property type="entry name" value="Arc_rbn_hlx_hlx"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025703">
        <property type="entry name" value="Bifunct_PutA"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005933">
        <property type="entry name" value="Delta1-pyrroline-5-COlate_DH-3"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029041">
        <property type="entry name" value="FAD-linked_oxidoreductase-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041349">
        <property type="entry name" value="PRODH"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR024090">
        <property type="entry name" value="PRODH_PutA_dom_I"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR024089">
        <property type="entry name" value="PRODH_PutA_dom_I/II"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR024082">
        <property type="entry name" value="PRODH_PutA_dom_II"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002872">
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        <property type="entry name" value="Ribbon_hlx_hlx"/>
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    </dbReference>
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        <property type="entry name" value="Pro_dh"/>
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    </dbReference>
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        <property type="entry name" value="Pro_dh-DNA_bdg"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF18327">
        <property type="entry name" value="PRODH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF000197">
        <property type="entry name" value="Bifunct_PutA"/>
        <property type="match status" value="1"/>
    </dbReference>
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        <property type="entry name" value="SSF47598"/>
        <property type="match status" value="1"/>
    </dbReference>
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        <property type="entry name" value="SSF51730"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53720">
        <property type="entry name" value="SSF53720"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF81935">
        <property type="entry name" value="SSF81935"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01238">
        <property type="entry name" value="D1pyr5carbox3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00070">
        <property type="entry name" value="ALDEHYDE_DEHYDR_CYS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="2" id="KW-0274">FAD</keyword>
    <keyword evidence="2" id="KW-0285">Flavoprotein</keyword>
    <keyword evidence="2" id="KW-0520">NAD</keyword>
    <keyword evidence="1 2" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="2" id="KW-0642">Proline metabolism</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0678">Repressor</keyword>
    <keyword evidence="2" id="KW-0804">Transcription</keyword>
    <keyword evidence="2" id="KW-0805">Transcription regulation</keyword>
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        <location>
            <begin position="89"/>
            <end position="137"/>
        </location>
    </feature>
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        <location>
            <begin position="145"/>
            <end position="256"/>
        </location>
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        <location>
            <begin position="267"/>
            <end position="569"/>
        </location>
    </feature>
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            <end position="1114"/>
        </location>
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        <location>
            <position position="928"/>
        </location>
    </feature>
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        <source>
            <dbReference type="ARBA" id="ARBA00023002"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="PIRNR" id="PIRNR000197"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="PIRSR" id="PIRSR000197-1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU10008"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="Pfam" id="PF00171"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="Pfam" id="PF01619"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="Pfam" id="PF14850"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="Pfam" id="PF18327"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="ABX38569.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="1345" mass="143103" checksum="356B137E81348B53" modified="2008-01-15" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="57" xmlns="http://uniprot.org/uniprot">
    <accession>A9C1P1</accession>
    <name>A9C1P1_DELAS</name>
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        <submittedName>
            <fullName evidence="4">Phage tail tape measure protein, TP901 family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ordered locus">Daci_2588</name>
        <name evidence="5" type="ordered locus">Daci_2622</name>
    </gene>
    <organism evidence="4 6">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 6" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">DSM 14801 / SPH-1</strain>
            <strain evidence="4">SPH-1</strain>
        </source>
    </reference>
    <reference evidence="6" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="4" key="3">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="4">SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX35226.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX35260.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012204505.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_2588"/>
    <dbReference type="PRIDE" id="A9C1P1"/>
    <dbReference type="EnsemblBacteria" id="ABX35226">
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        <property type="gene ID" value="Daci_2588"/>
    </dbReference>
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        <property type="protein sequence ID" value="ABX35260"/>
        <property type="gene ID" value="Daci_2622"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_2588"/>
    <dbReference type="KEGG" id="dac:Daci_2622"/>
    <dbReference type="eggNOG" id="COG5283">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_006757_2_1_4"/>
    <dbReference type="OMA" id="DARGKMR"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010090">
        <property type="entry name" value="Phage_tape_meas"/>
    </dbReference>
    <dbReference type="Pfam" id="PF10145">
        <property type="entry name" value="PhageMin_Tail"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01760">
        <property type="entry name" value="tape_meas_TP901"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="2" id="KW-0472">Membrane</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="2" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="543"/>
            <end position="566"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="573"/>
            <end position="592"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="598"/>
            <end position="617"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="629"/>
            <end position="654"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="674"/>
            <end position="696"/>
        </location>
    </feature>
    <feature type="domain" description="PhageMin_Tail" evidence="3">
        <location>
            <begin position="236"/>
            <end position="442"/>
        </location>
    </feature>
    <feature type="coiled-coil region" evidence="1">
        <location>
            <begin position="29"/>
            <end position="83"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF10145"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="ABX35226.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="ABX35260.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="945" mass="95910" checksum="6BB127206CBDBF18" modified="2008-01-15" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="74" xmlns="http://uniprot.org/uniprot">
    <accession>A9C2G9</accession>
    <name>A9C2G9_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="11">Methyl-accepting chemotaxis sensory transducer with Cache sensor</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="11" type="ordered locus">Daci_3477</name>
    </gene>
    <organism evidence="11 12">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="11 12" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
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            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="12">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="12" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="12">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="6">Belongs to the methyl-accepting chemotaxis (MCP) protein family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX36113.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012205313.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_3477"/>
    <dbReference type="PRIDE" id="A9C2G9"/>
    <dbReference type="EnsemblBacteria" id="ABX36113">
        <property type="protein sequence ID" value="ABX36113"/>
        <property type="gene ID" value="Daci_3477"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_3477"/>
    <dbReference type="eggNOG" id="COG0840">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_000445_107_12_4"/>
    <dbReference type="OMA" id="TEPYIDM"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0007165">
        <property type="term" value="P:signal transduction"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR033479">
        <property type="entry name" value="dCache_1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003660">
        <property type="entry name" value="HAMP_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004089">
        <property type="entry name" value="MCPsignal_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029151">
        <property type="entry name" value="Sensor-like_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02743">
        <property type="entry name" value="dCache_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00672">
        <property type="entry name" value="HAMP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00015">
        <property type="entry name" value="MCPsignal"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00304">
        <property type="entry name" value="HAMP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00283">
        <property type="entry name" value="MA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF103190">
        <property type="entry name" value="SSF103190"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50111">
        <property type="entry name" value="CHEMOTAXIS_TRANSDUC_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50885">
        <property type="entry name" value="HAMP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="5 8" id="KW-0472">Membrane</keyword>
    <keyword evidence="12" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="7" id="KW-0807">Transducer</keyword>
    <keyword evidence="3 8" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="4 8" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="268"/>
            <end position="292"/>
        </location>
    </feature>
    <feature type="domain" description="HAMP" evidence="10">
        <location>
            <begin position="293"/>
            <end position="347"/>
        </location>
    </feature>
    <feature type="domain" description="Methyl-accepting transducer" evidence="9">
        <location>
            <begin position="352"/>
            <end position="581"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00029447"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00284"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="9">
        <source>
            <dbReference type="PROSITE" id="PS50111"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="10">
        <source>
            <dbReference type="PROSITE" id="PS50885"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="EMBL" id="ABX36113.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="606" mass="64001" checksum="B11CA0E5874C0239" modified="2008-01-15" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="67" xmlns="http://uniprot.org/uniprot">
    <accession>A9C2I6</accession>
    <name>A9C2I6_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Monooxygenase FAD-binding</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_3703</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX36335.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012205531.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_3703"/>
    <dbReference type="PRIDE" id="A9C2I6"/>
    <dbReference type="EnsemblBacteria" id="ABX36335">
        <property type="protein sequence ID" value="ABX36335"/>
        <property type="gene ID" value="Daci_3703"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_3703"/>
    <dbReference type="eggNOG" id="COG0654">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_009665_19_3_4"/>
    <dbReference type="OMA" id="KDWDPRI"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0071949">
        <property type="term" value="F:FAD binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004497">
        <property type="term" value="F:monooxygenase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.50.50.60">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002938">
        <property type="entry name" value="FAD-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036188">
        <property type="entry name" value="FAD/NAD-bd_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01494">
        <property type="entry name" value="FAD_binding_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51905">
        <property type="entry name" value="SSF51905"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0503">Monooxygenase</keyword>
    <keyword evidence="2" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="FAD_binding_3" evidence="1">
        <location>
            <begin position="11"/>
            <end position="351"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF01494"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX36335.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="402" mass="44331" checksum="A3A060187F0CDEAD" modified="2008-01-15" version="1">MSTSISSRALPVLVAGGGIGGVAAALALARQGFAVKVLEQAPQLGEIGAGIQLGPNAFAAFDALGIGELARGRAVYTDEMVMHDALDERLVGRIPTGEPFRARFGNPYAVIHRADIHTSLLEGARAHGQIETLTGTRIEAVQQEGDTVTVRDQHGQVHVGQALIGADGVKSVVRQQYVGDAARVSGHVVYRAVVEKNDFPEDLRWNAASIWVGPNYHLVHYPLRGGEQYNVVVTFHSREQEEWGVREGSRQEVQSYYSDCCPRARQLIDLPKSWKRWATADREPIGQWSFGRATLLGDAAHPTLQYIAQGACMALEDAVTLGQALKHCGNDWPQALRLYERSRIARTARVVLSAREMGRIFHASGVERLVRNDLWKGRTPQRFYDAMEWLYGWKAETCLAED</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="58" xmlns="http://uniprot.org/uniprot">
    <accession>A9C2J9</accession>
    <name>A9C2J9_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Antibiotic biosynthesis monooxygenase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_3716</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX36348.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012205544.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_3716"/>
    <dbReference type="PRIDE" id="A9C2J9"/>
    <dbReference type="EnsemblBacteria" id="ABX36348">
        <property type="protein sequence ID" value="ABX36348"/>
        <property type="gene ID" value="Daci_3716"/>
    </dbReference>
    <dbReference type="GeneID" id="60687953"/>
    <dbReference type="KEGG" id="dac:Daci_3716"/>
    <dbReference type="eggNOG" id="COG2329">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_127039_0_1_4"/>
    <dbReference type="OMA" id="MIAVLFE"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004497">
        <property type="term" value="F:monooxygenase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007138">
        <property type="entry name" value="ABM_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011008">
        <property type="entry name" value="Dimeric_a/b-barrel"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03992">
        <property type="entry name" value="ABM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54909">
        <property type="entry name" value="SSF54909"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51725">
        <property type="entry name" value="ABM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0503">Monooxygenase</keyword>
    <keyword evidence="2" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="ABM" evidence="1">
        <location>
            <begin position="2"/>
            <end position="90"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS51725"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX36348.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="122" mass="13739" checksum="216C0CD23FE95C80" modified="2008-01-15" version="1">MVVVLFELQALPGQNQTYVDLVNKLTPMLKPMEGFISVECFQSTLNPEKVMSVTTWRDEEAVVQWRNVEAHLSAQRAGRDKIFKDYRVRVTQVLRDYGLNDRAQAPADSIMGKAGSCPVSHA</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2021-06-02" version="61" xmlns="http://uniprot.org/uniprot">
    <accession>A9C2L5</accession>
    <name>A9C2L5_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Transcriptional regulator, XRE family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_3732</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX36364.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012205558.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="ABX36364">
        <property type="protein sequence ID" value="ABX36364"/>
        <property type="gene ID" value="Daci_3732"/>
    </dbReference>
    <dbReference type="GeneID" id="60687960"/>
    <dbReference type="KEGG" id="dac:Daci_3732"/>
    <dbReference type="eggNOG" id="COG1476">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_066192_44_1_4"/>
    <dbReference type="OMA" id="YEPSIWL"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd00093">
        <property type="entry name" value="HTH_XRE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.260.40">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001387">
        <property type="entry name" value="Cro/C1-type_HTH"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010982">
        <property type="entry name" value="Lambda_DNA-bd_dom_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01381">
        <property type="entry name" value="HTH_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00530">
        <property type="entry name" value="HTH_XRE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47413">
        <property type="entry name" value="SSF47413"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50943">
        <property type="entry name" value="HTH_CROC1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HTH cro/C1-type" evidence="1">
        <location>
            <begin position="5"/>
            <end position="59"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS50943"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX36364.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="63" mass="7048" checksum="26F19A210C43FBDF" modified="2008-01-15" version="1">MKNTIRELRAQRGWSQAALADLLGVSRQTVNAIETGRYDPSLPLAFAIARVFETRIEAIFQEG</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="80" xmlns="http://uniprot.org/uniprot">
    <accession>A9C2R5</accession>
    <name>A9C2R5_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Transcriptional regulator, GntR family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ordered locus">Daci_3782</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="6" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX36414.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012205608.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_3782"/>
    <dbReference type="PRIDE" id="A9C2R5"/>
    <dbReference type="EnsemblBacteria" id="ABX36414">
        <property type="protein sequence ID" value="ABX36414"/>
        <property type="gene ID" value="Daci_3782"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_3782"/>
    <dbReference type="eggNOG" id="COG1802">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_017584_5_1_4"/>
    <dbReference type="OMA" id="VFEMRSA"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003700">
        <property type="term" value="F:DNA-binding transcription factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd07377">
        <property type="entry name" value="WHTH_GntR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.120.530">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011711">
        <property type="entry name" value="GntR_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008920">
        <property type="entry name" value="TF_FadR/GntR_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000524">
        <property type="entry name" value="Tscrpt_reg_HTH_GntR"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036390">
        <property type="entry name" value="WH_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07729">
        <property type="entry name" value="FCD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00392">
        <property type="entry name" value="GntR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00895">
        <property type="entry name" value="FCD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00345">
        <property type="entry name" value="HTH_GNTR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46785">
        <property type="entry name" value="SSF46785"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48008">
        <property type="entry name" value="SSF48008"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50949">
        <property type="entry name" value="HTH_GNTR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0804">Transcription</keyword>
    <keyword evidence="1" id="KW-0805">Transcription regulation</keyword>
    <feature type="domain" description="HTH gntR-type" evidence="4">
        <location>
            <begin position="14"/>
            <end position="81"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023015"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023163"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="PROSITE" id="PS50949"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="ABX36414.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="233" mass="26189" checksum="34B9807FF2014DBD" modified="2008-01-15" version="1">MPPLATPSPDAAQTSAHEEAYQHLSHGIRMGLLKPGDRLVADDIANSIGMSRMPVREALRRLTAEGLLVMPPNRGAIVRELSESEVIEVFEMRAVLEGLAAAMAARRCTQADVDDLQDLLLKMKRCESDQSEWITVHRRFHERFCRISAAPRLCEQISALHSVVEPLMRIWLENNEPSPKLQEHHQQLVASLQAGDPDRLEREVRAHVRGTVDSITQAMRRHRPPQGKSRAKA</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="61" xmlns="http://uniprot.org/uniprot">
    <accession>A9C316</accession>
    <name>A9C316_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Transcriptional regulator, AbrB family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Daci_4189</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="4" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX36820.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_008265574.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_4189"/>
    <dbReference type="PRIDE" id="A9C316"/>
    <dbReference type="EnsemblBacteria" id="ABX36820">
        <property type="protein sequence ID" value="ABX36820"/>
        <property type="gene ID" value="Daci_4189"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_4189"/>
    <dbReference type="eggNOG" id="COG2002">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_143957_1_0_4"/>
    <dbReference type="OMA" id="VRKFPYH"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003700">
        <property type="term" value="F:DNA-binding transcription factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0097351">
        <property type="term" value="F:toxin sequestering activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0001558">
        <property type="term" value="P:regulation of cell growth"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR031848">
        <property type="entry name" value="PrlF_antitoxin"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007159">
        <property type="entry name" value="SpoVT-AbrB_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037914">
        <property type="entry name" value="SpoVT-AbrB_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF15937">
        <property type="entry name" value="PrlF_antitoxin"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00966">
        <property type="entry name" value="SpoVT_AbrB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF89447">
        <property type="entry name" value="SSF89447"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01439">
        <property type="entry name" value="lp_hng_hel_AbrB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51740">
        <property type="entry name" value="SPOVT_ABRB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="SpoVT-AbrB" evidence="2">
        <location>
            <begin position="5"/>
            <end position="50"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU01076"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS51740"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ABX36820.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="105" mass="11256" checksum="DFAC817554942490" modified="2008-01-15" version="1">MPAIHEVATLTSKGQITLPKSIRQALGVDTGGKVAFDLRGGEVVVTRADAEHEDPAIAAFLTLLARDIEAGRNVRGLPEDLARTMLEHAGHKVDLGDDFDEDVEI</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="47" xmlns="http://uniprot.org/uniprot">
    <accession>A9C3H7</accession>
    <name>A9C3H7_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Daci_4659</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="2" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX37288.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012206458.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_4659"/>
    <dbReference type="PRIDE" id="A9C3H7"/>
    <dbReference type="EnsemblBacteria" id="ABX37288">
        <property type="protein sequence ID" value="ABX37288"/>
        <property type="gene ID" value="Daci_4659"/>
    </dbReference>
    <dbReference type="GeneID" id="60688806"/>
    <dbReference type="KEGG" id="dac:Daci_4659"/>
    <dbReference type="eggNOG" id="ENOG5033BX8">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_191939_0_0_4"/>
    <dbReference type="OMA" id="RAGSWET"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ABX37288.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="95" mass="10785" checksum="4335E7C2C413394F" modified="2008-01-15" version="1">MHIKPMVATLEAPPSTAIAPPADPRSFTFQMPLFRPGTHVTQNGKAEKVSHVILRRRELMVYLVGHEDPVRPERLSITPSMFTTQRRPEALSWIL</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="57" xmlns="http://uniprot.org/uniprot">
    <accession>A9BLN9</accession>
    <name>A9BLN9_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="1">OsmC family protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Daci_3893</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="2" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX36524.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_3893"/>
    <dbReference type="PRIDE" id="A9BLN9"/>
    <dbReference type="EnsemblBacteria" id="ABX36524">
        <property type="protein sequence ID" value="ABX36524"/>
        <property type="gene ID" value="Daci_3893"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_3893"/>
    <dbReference type="eggNOG" id="COG1764">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_106355_1_0_4"/>
    <dbReference type="OMA" id="ANCPVSQ"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004601">
        <property type="term" value="F:peroxidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006979">
        <property type="term" value="P:response to oxidative stress"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.300.20">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015946">
        <property type="entry name" value="KH_dom-like_a/b"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003718">
        <property type="entry name" value="OsmC/Ohr_fam"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036102">
        <property type="entry name" value="OsmC/Ohrsf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019904">
        <property type="entry name" value="Peroxiredoxin_OsmC"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02566">
        <property type="entry name" value="OsmC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF82784">
        <property type="entry name" value="SSF82784"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR03562">
        <property type="entry name" value="osmo_induc_OsmC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ABX36524.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="165" mass="17449" checksum="1AC3C0F717BCFA80" modified="2008-01-15" version="1">MPRGACAVMAACPTNAQEKHMSEKTASVHWEGAGKTGQGRISTETGALKDHPYGFGSRFGDDRKGTNPEEIVGAAHAACFTMAFAFACEKAGIATEMLDTTAKVRLAKDGEGFKIDRIALTLQAKVRGIDDAQFQKIAQEAKSQCPLSKALAGVPEVTLVATLLH</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-01-19" version="35" xmlns="http://uniprot.org/uniprot">
    <accession>A9BLP2</accession>
    <name>A9BLP2_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_3896</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX36527.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012205721.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_3896"/>
    <dbReference type="EnsemblBacteria" id="ABX36527">
        <property type="protein sequence ID" value="ABX36527"/>
        <property type="gene ID" value="Daci_3896"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_3896"/>
    <dbReference type="eggNOG" id="ENOG502ZXXF">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_762312_0_0_4"/>
    <dbReference type="OMA" id="EARWNAG"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="1">
        <location>
            <begin position="1"/>
            <end position="21"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5002735787" evidence="1">
        <location>
            <begin position="22"/>
            <end position="432"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX36527.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="432" mass="46677" checksum="F81D202141CFCDF5" modified="2008-01-15" version="1">MTRLLWLPAAATALCCGGALASSCRVEAEPAREPVARQVWTDIAEFSFLTGLDLDDASGRMTLVRSLESMQSFPSLKAASAAWGTLRARIDGLADTVQKLGQAVGRLQQLCDQLDAVSLAPDAPLDEARWNAGVAAVETEMDAAIAAAAPVVAQLESHASLLRVAAAHHARQPPPANAVVRLGPAPQAMATEFSTLALRWRAVASDLANARRILQVRPVRGSSAPLIAMTAAMRELARISAEAHALSAQRLSDADFRRYETGDYLYDQCPMLKDRQWVGLQNLYWSERRNAVALLQGTGLVSPPGLYNVKPLQISVPAMIGGADRWRFMRTGKGYWLVQNAAFGPGTMALDVTSVAGKSHLELKMTASAGDSPRFSGQQWRCAPSDLPGQFHLYNRFLSDAIVLDTANDNGIAVMLPATSRFSGQYWRVIER</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="62" xmlns="http://uniprot.org/uniprot">
    <accession>A9BM25</accession>
    <name>A9BM25_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Thioesterase superfamily protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_4741</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
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                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX37370.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012206540.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_4741"/>
    <dbReference type="PRIDE" id="A9BM25"/>
    <dbReference type="EnsemblBacteria" id="ABX37370">
        <property type="protein sequence ID" value="ABX37370"/>
        <property type="gene ID" value="Daci_4741"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_4741"/>
    <dbReference type="eggNOG" id="COG0824">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_101141_0_1_4"/>
    <dbReference type="OMA" id="NDMYDHM"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029069">
        <property type="entry name" value="HotDog_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006683">
        <property type="entry name" value="Thioestr_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03061">
        <property type="entry name" value="4HBT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54637">
        <property type="entry name" value="SSF54637"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="4HBT" evidence="1">
        <location>
            <begin position="36"/>
            <end position="116"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF03061"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX37370.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="153" mass="16918" checksum="A35D00669AF166DC" modified="2008-01-15" version="1">MAAMNESPPSRPAPQPRSAYAAFRRISTRWSDNDVYGHVNNVVYYSWFDTAVNAHLIEQGALDIHAGETIGLVIETQCNYFAPLAFPQEVDAGIRVARIGGSSVRYEVGLFAQGEPLSAAAGHFVHVYVDRQTRRPAQIPQALRRVLEPLLRG</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="82" xmlns="http://uniprot.org/uniprot">
    <accession>A9BM70</accession>
    <name>A9BM70_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="13">TonB-dependent siderophore receptor</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="13" type="ordered locus">Daci_4786</name>
    </gene>
    <organism evidence="13 14">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="13 14" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="14">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="14" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="14">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="9">Cell outer membrane</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="1 9">Belongs to the TonB-dependent receptor family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX37415.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012206585.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_4786"/>
    <dbReference type="PRIDE" id="A9BM70"/>
    <dbReference type="EnsemblBacteria" id="ABX37415">
        <property type="protein sequence ID" value="ABX37415"/>
        <property type="gene ID" value="Daci_4786"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_4786"/>
    <dbReference type="eggNOG" id="COG4774">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_008287_9_4_4"/>
    <dbReference type="OMA" id="IGVKSDW"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009279">
        <property type="term" value="C:cell outer membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015344">
        <property type="term" value="F:siderophore uptake transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0038023">
        <property type="term" value="F:signaling receptor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0055072">
        <property type="term" value="P:iron ion homeostasis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.170.130.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.170.20">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012910">
        <property type="entry name" value="Plug_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037066">
        <property type="entry name" value="Plug_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR039423">
        <property type="entry name" value="TonB-dep_rcpt"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000531">
        <property type="entry name" value="TonB-dep_rcpt_b-brl"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036942">
        <property type="entry name" value="TonB_rcpt_b-brl_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010917">
        <property type="entry name" value="TonB_rcpt_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010105">
        <property type="entry name" value="TonB_sidphr_rcpt"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR32552">
        <property type="entry name" value="PTHR32552"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07715">
        <property type="entry name" value="Plug"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00593">
        <property type="entry name" value="TonB_dep_Rec"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01783">
        <property type="entry name" value="TonB-siderophor"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01156">
        <property type="entry name" value="TONB_DEPENDENT_REC_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="8" id="KW-0998">Cell outer membrane</keyword>
    <keyword evidence="2" id="KW-0406">Ion transport</keyword>
    <keyword evidence="4" id="KW-0408">Iron</keyword>
    <keyword evidence="2" id="KW-0410">Iron transport</keyword>
    <keyword evidence="6 9" id="KW-0472">Membrane</keyword>
    <keyword evidence="7 13" id="KW-0675">Receptor</keyword>
    <keyword evidence="14" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 10" id="KW-0732">Signal</keyword>
    <keyword evidence="5 9" id="KW-0798">TonB box</keyword>
    <keyword evidence="2" id="KW-0813">Transport</keyword>
    <feature type="signal peptide" evidence="10">
        <location>
            <begin position="1"/>
            <end position="31"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5002734883" evidence="10">
        <location>
            <begin position="32"/>
            <end position="712"/>
        </location>
    </feature>
    <feature type="domain" description="Plug" evidence="12">
        <location>
            <begin position="82"/>
            <end position="178"/>
        </location>
    </feature>
    <feature type="domain" description="TonB_dep_Rec" evidence="11">
        <location>
            <begin position="255"/>
            <end position="711"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00009810"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022496"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022729"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023004"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023077"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023170"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00023237"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="RuleBase" id="RU003357"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="11">
        <source>
            <dbReference type="Pfam" id="PF00593"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="12">
        <source>
            <dbReference type="Pfam" id="PF07715"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="13">
        <source>
            <dbReference type="EMBL" id="ABX37415.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="14">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="712" mass="79191" checksum="7ED6A7A38739FC94" modified="2008-01-15" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="64" xmlns="http://uniprot.org/uniprot">
    <accession>A9BMB4</accession>
    <name>A9BMB4_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="4">3'-5' exonuclease</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ordered locus">Daci_4830</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
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    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="5" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX37459.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012206629.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_4830"/>
    <dbReference type="PRIDE" id="A9BMB4"/>
    <dbReference type="EnsemblBacteria" id="ABX37459">
        <property type="protein sequence ID" value="ABX37459"/>
        <property type="gene ID" value="Daci_4830"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_4830"/>
    <dbReference type="eggNOG" id="COG0349">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_049674_2_2_4"/>
    <dbReference type="OMA" id="WISRELY"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008408">
        <property type="term" value="F:3'-5' exonuclease activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003676">
        <property type="term" value="F:nucleic acid binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.420.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002562">
        <property type="entry name" value="3'-5'_exonuclease_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012337">
        <property type="entry name" value="RNaseH-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036397">
        <property type="entry name" value="RNaseH_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01612">
        <property type="entry name" value="DNA_pol_A_exo1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53098">
        <property type="entry name" value="SSF53098"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1 4" id="KW-0269">Exonuclease</keyword>
    <keyword evidence="1 4" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="1 4" id="KW-0540">Nuclease</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="3'-5' exonuclease" evidence="3">
        <location>
            <begin position="27"/>
            <end position="193"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="200"/>
            <end position="294"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Pro residues" evidence="2">
        <location>
            <begin position="209"/>
            <end position="223"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="2">
        <location>
            <begin position="231"/>
            <end position="265"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022839"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF01612"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="ABX37459.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="294" mass="31610" checksum="60FAB78BC523B1EE" modified="2008-01-15" version="1">MPRLHAPSKDDSRLLPPFAALPERCIHVPATDAEFAAARAALMAAPVLGFDTESKPLFHAHQTDTGPHVVQLATCDQAWLLQLHHAQARALAADVLASESICKAGFGLDHDRSALPGRLGVALHNVIDLDRVFKRHGYASSVGVRAAVALVLGQNFHKSKKISTSNWAAPQLSLAQRHYAANDAHGAAMVHAALPAWEQRQPAVAERPARPARPAPEPRGPGSSSGPRGPRRHHAPREQDAPREPHVSHEQHVSHEPHEPHAPRESSAPRSSPRPSRTPRLLQAPVTPGKPSPG</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="58" xmlns="http://uniprot.org/uniprot">
    <accession>A9BMB8</accession>
    <name>A9BMB8_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Daci_4834</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="4" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX37463.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_4834"/>
    <dbReference type="PRIDE" id="A9BMB8"/>
    <dbReference type="EnsemblBacteria" id="ABX37463">
        <property type="protein sequence ID" value="ABX37463"/>
        <property type="gene ID" value="Daci_4834"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_4834"/>
    <dbReference type="eggNOG" id="COG1262">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_012431_9_0_4"/>
    <dbReference type="OMA" id="CRGTFRN"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0052699">
        <property type="term" value="P:ergothioneine biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.1580.10">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016187">
        <property type="entry name" value="CTDL_fold"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR024775">
        <property type="entry name" value="DinB-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR034660">
        <property type="entry name" value="DinB/YfiT-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017806">
        <property type="entry name" value="EgtB"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005532">
        <property type="entry name" value="SUMF_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR042095">
        <property type="entry name" value="SUMF_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12867">
        <property type="entry name" value="DinB_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03781">
        <property type="entry name" value="FGE-sulfatase"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF109854">
        <property type="entry name" value="SSF109854"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56436">
        <property type="entry name" value="SSF56436"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR03440">
        <property type="entry name" value="egtB_TIGR03440"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="DinB_2" evidence="2">
        <location>
            <begin position="14"/>
            <end position="147"/>
        </location>
    </feature>
    <feature type="domain" description="FGE-sulfatase" evidence="1">
        <location>
            <begin position="187"/>
            <end position="338"/>
        </location>
    </feature>
    <feature type="domain" description="FGE-sulfatase" evidence="1">
        <location>
            <begin position="354"/>
            <end position="427"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF03781"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF12867"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ABX37463.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="430" mass="48752" checksum="13A95AF8E9A0E55F" modified="2008-01-15" version="1">MREMPAVFRWVQRYEAVRQSTVLLAAPLSAEDACVQSMPDASPAKWHLAHTTWFFETFVLAEHAPGVPPFDADFRVLFNSYYQQVGERHPRAQRGLLTRPSLARVLAYREAVDQRMLQMFEDWGTQPPARLAALLELGLQHEQQHQELLLTDIKHLLSCHPLWPAYRAQEEGAPAPQEPDGLPPPLQWLTVPRGMHAVGHAGEGFAFDNERPRHEVFLQGCEMAQRPVSNAEFLRFVKDGGYAQPQWWLAEGWDWRCAQQLEHPWYWRRQAGGVMDGMWQEFSLHGALALDGRRPVCHLSYFEADAYARWAGARLPTEAEWEAALAAQMAQRPQHGEPPGPVHPCAMQPGSHALGEVWEWTQSAYTAYPGFVVAEGAVGEYNGKFMVNQYVLRGGSCLTPPGHARASYRNFFPTQARWQMTGLRLARDLA</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="58" xmlns="http://uniprot.org/uniprot">
    <accession>A9BMF7</accession>
    <name>A9BMF7_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">Cytokinin riboside 5'-monophosphate phosphoribohydrolase</fullName>
            <ecNumber evidence="2">3.2.2.n1</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Daci_4873</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="4" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>AMP + H2O = adenine + D-ribose 5-phosphate</text>
            <dbReference type="Rhea" id="RHEA:20129"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:16708"/>
            <dbReference type="ChEBI" id="CHEBI:78346"/>
            <dbReference type="ChEBI" id="CHEBI:456215"/>
            <dbReference type="EC" id="3.2.2.4"/>
        </reaction>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the LOG family.</text>
    </comment>
    <dbReference type="EC" id="3.2.2.n1" evidence="2"/>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX37502.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012206672.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_4873"/>
    <dbReference type="PRIDE" id="A9BMF7"/>
    <dbReference type="EnsemblBacteria" id="ABX37502">
        <property type="protein sequence ID" value="ABX37502"/>
        <property type="gene ID" value="Daci_4873"/>
    </dbReference>
    <dbReference type="GeneID" id="60689217"/>
    <dbReference type="KEGG" id="dac:Daci_4873"/>
    <dbReference type="eggNOG" id="COG1611">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_058336_4_2_4"/>
    <dbReference type="OMA" id="HQKPIGL"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008714">
        <property type="term" value="F:AMP nucleosidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009691">
        <property type="term" value="P:cytokinin biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005269">
        <property type="entry name" value="LOG"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR031100">
        <property type="entry name" value="LOG_fam"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03641">
        <property type="entry name" value="Lysine_decarbox"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00730">
        <property type="entry name" value="TIGR00730"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2" id="KW-0203">Cytokinin biosynthesis</keyword>
    <keyword evidence="2" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00000274"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="RuleBase" id="RU363015"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ABX37502.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="197" mass="21410" checksum="0D3BFB272AAB8764" modified="2008-01-15" version="1">MTNPTFSICVYCGSRPGDQPGFIEAARATGRWIGEHGGQLVYGGGRSGLMGEVAEATRQAGGRVVGVIPQALVDKELANHACDELHIVQTMHERKAMMAERSDAFVALPGGIGTFEELFEVWTWRQLRYHDKPIGLLNVDGYYDSMLQFLQTCVGHGFMGEWQMGLIESGSDIPTLLQSLVQNAGTGLETAPLRAVI</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="51" xmlns="http://uniprot.org/uniprot">
    <accession>A9BMP9</accession>
    <name>A9BMP9_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Membrane protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_4965</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX37594.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012206764.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_4965"/>
    <dbReference type="PRIDE" id="A9BMP9"/>
    <dbReference type="EnsemblBacteria" id="ABX37594">
        <property type="protein sequence ID" value="ABX37594"/>
        <property type="gene ID" value="Daci_4965"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_4965"/>
    <dbReference type="eggNOG" id="COG4323">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_140388_0_0_4"/>
    <dbReference type="OMA" id="FRHPLYS"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009305">
        <property type="entry name" value="Mpo1-like"/>
    </dbReference>
    <dbReference type="Pfam" id="PF06127">
        <property type="entry name" value="DUF962"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="43"/>
            <end position="60"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="66"/>
            <end position="85"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX37594.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="117" mass="13415" checksum="06CBBD1ABA233D62" modified="2008-01-15" version="1">MSHASAPLPGAAQAAVDPRQFKSFAEFYPFYLQEHSNRTCRRLHFVGSTLALLCLFALFLTGNFWFLLGGLLFGYGFAWIGHFGFEKNRPASFKRPLYSFRGDWVMWRDILTGRIAL</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="71" xmlns="http://uniprot.org/uniprot">
    <accession>A9BMQ2</accession>
    <name>A9BMQ2_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="3">FAD linked oxidase domain protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Daci_4968</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="4" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX37597.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012206767.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_4968"/>
    <dbReference type="PRIDE" id="A9BMQ2"/>
    <dbReference type="EnsemblBacteria" id="ABX37597">
        <property type="protein sequence ID" value="ABX37597"/>
        <property type="gene ID" value="Daci_4968"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_4968"/>
    <dbReference type="eggNOG" id="COG0277">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_017779_4_1_4"/>
    <dbReference type="OMA" id="WSTIGGN"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0071949">
        <property type="term" value="F:FAD binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016491">
        <property type="term" value="F:oxidoreductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.45.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.43.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.465.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016166">
        <property type="entry name" value="FAD-bd_PCMH"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036318">
        <property type="entry name" value="FAD-bd_PCMH-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016167">
        <property type="entry name" value="FAD-bd_PCMH_sub1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016169">
        <property type="entry name" value="FAD-bd_PCMH_sub2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016164">
        <property type="entry name" value="FAD-linked_Oxase-like_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004113">
        <property type="entry name" value="FAD-linked_oxidase_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006094">
        <property type="entry name" value="Oxid_FAD_bind_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016171">
        <property type="entry name" value="Vanillyl_alc_oxidase_C-sub2"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02913">
        <property type="entry name" value="FAD-oxidase_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01565">
        <property type="entry name" value="FAD_binding_4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55103">
        <property type="entry name" value="SSF55103"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56176">
        <property type="entry name" value="SSF56176"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51387">
        <property type="entry name" value="FAD_PCMH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0274">FAD</keyword>
    <keyword evidence="1" id="KW-0285">Flavoprotein</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="FAD-binding PCMH-type" evidence="2">
        <location>
            <begin position="34"/>
            <end position="215"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022827"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS51387"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ABX37597.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="476" mass="50977" checksum="32E27F4510F3BEA3" modified="2008-01-15" version="1">MTALLERLRQIVGEAHVLTEGDLVAYEQDWRRRVRGKSLAVVRPASTAEVAAVVRECAAAGTSIIPQGGNTGLSVGSTPDDSGTQVVLSLTRLNAVRHIDRDNLSFTVEAGCILQSLQELAEKEGLLFPLSLAAEGSCTIGGNLGTNAGGTQVVRYGNTRELCLGLEVVTPQGEVWDGLKGLRKDNTGYDLRDLFIGSEGTLGIITAATMKLFPQPAAQLTAFAAVPSMEAAVRLLGMAHQYLGAGLTGFEVMGQFALSLVIKHMPQLRVPFAGLDGAPPYYVLVENSDSESEQHARERFEALLELAFEDGCVLDAVVAESLSQAHELWHIRESIPLAQAEEGLNIKHDISIAASRIPAFVEHTDAVLQREIPGVRLVNFGHLGDGNLHYNVQAPVGGDAKAFLNEREHLVNHLVYEAVAEFGGSFSAEHGVGALKVDKLQKYQSPVALGMMRAIKQALDPQGLMNPGCILPRQAS</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2020-10-07" version="49" xmlns="http://uniprot.org/uniprot">
    <accession>A9BMQ7</accession>
    <name>A9BMQ7_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Outer membrane receptor for ferric coprogen and ferric-rhodotorulic acid-like protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Daci_4973</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="4" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the TonB-dependent receptor family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX37602.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_4973"/>
    <dbReference type="EnsemblBacteria" id="ABX37602">
        <property type="protein sequence ID" value="ABX37602"/>
        <property type="gene ID" value="Daci_4973"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_4973"/>
    <dbReference type="eggNOG" id="COG4773">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_2259153_0_0_4"/>
    <dbReference type="OMA" id="VYLMARY"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.170.20">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR039423">
        <property type="entry name" value="TonB-dep_rcpt"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000531">
        <property type="entry name" value="TonB-dep_rcpt_b-brl"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036942">
        <property type="entry name" value="TonB_rcpt_b-brl_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR32552">
        <property type="entry name" value="PTHR32552"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00593">
        <property type="entry name" value="TonB_dep_Rec"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-0675">Receptor</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="TonB_dep_Rec" evidence="2">
        <location>
            <begin position="28"/>
            <end position="101"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00009810"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF00593"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ABX37602.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="103" mass="11271" checksum="2F27223F2ED0722B" modified="2008-01-15" version="1">MALSLGQARRGAGADVVVQRRAGLAQSSNYTLASSPNGQERVQQGAYGLVYLMARYQFNRQLSLQVNLNNAFDKKYCSQIGYYGASAWGAPPSVVATLNYRFQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="79" xmlns="http://uniprot.org/uniprot">
    <accession>A9BMR3</accession>
    <name>A9BMR3_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Transcriptional regulator, LysR family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Daci_4979</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="4" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the LysR transcriptional regulatory family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX37608.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012206778.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_4979"/>
    <dbReference type="PRIDE" id="A9BMR3"/>
    <dbReference type="EnsemblBacteria" id="ABX37608">
        <property type="protein sequence ID" value="ABX37608"/>
        <property type="gene ID" value="Daci_4979"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_4979"/>
    <dbReference type="eggNOG" id="COG0583">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_039613_6_0_4"/>
    <dbReference type="OMA" id="DIHSDNF"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003700">
        <property type="term" value="F:DNA-binding transcription factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005119">
        <property type="entry name" value="LysR_subst-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000847">
        <property type="entry name" value="Tscrpt_reg_HTH_LysR"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036390">
        <property type="entry name" value="WH_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00126">
        <property type="entry name" value="HTH_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03466">
        <property type="entry name" value="LysR_substrate"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00039">
        <property type="entry name" value="HTHLYSR"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46785">
        <property type="entry name" value="SSF46785"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50931">
        <property type="entry name" value="HTH_LYSR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HTH lysR-type" evidence="2">
        <location>
            <begin position="17"/>
            <end position="74"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00009437"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS50931"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ABX37608.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="318" mass="34433" checksum="C85A54B9D4F85C83" modified="2008-01-15" version="1">MGSIDRRDSTPQLLNRLRMRQVALMLAIDQKGTLRGAAAELGLSQPAATKMLHELESALGLPLFDRVGRGLQLNAAGERVTGYFRHLRGGMEALNRELQELREGSAGRLAVGSIMAASPGRLTQALLALKRQWPLLSIEVAVDTSDRLLAQLQDGVLEVVVGRQTGQADPAHLFRTIDDEALSIIVGCNHPLARARSLGFAQLQAHGWVLQPPGSPMRALIDQEFQAHGLPLPRGLIETGSILTTMNLVRNSDLIAVIPQAVARDSAAHGMVRILPYRMRRNLQAYGSLVRRDRPLSQAAASFLALLHGQEPPPASAP</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="55" xmlns="http://uniprot.org/uniprot">
    <accession>A9BMS1</accession>
    <name>A9BMS1_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Tail Collar domain protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_4987</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX37616.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012206786.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_4987"/>
    <dbReference type="PRIDE" id="A9BMS1"/>
    <dbReference type="EnsemblBacteria" id="ABX37616">
        <property type="protein sequence ID" value="ABX37616"/>
        <property type="gene ID" value="Daci_4987"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_4987"/>
    <dbReference type="eggNOG" id="COG4675">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_087872_1_1_4"/>
    <dbReference type="OMA" id="TYCICAS"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.1340.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011083">
        <property type="entry name" value="Phage_tail_collar_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037053">
        <property type="entry name" value="Phage_tail_collar_dom_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07484">
        <property type="entry name" value="Collar"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Collar" evidence="1">
        <location>
            <begin position="1"/>
            <end position="53"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF07484"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX37616.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="157" mass="16726" checksum="0FBE999104147E39" modified="2008-01-15" version="1">MFAGNFAPAGWMFCEGQQMPISEYETLFNLIGTTYGGDGQSTFALPDMRGRIPLHAGNEFTLAQAAGVEEVTLTVNQIPAHTHGVPASSGTGFLASPADAVFAKHRDHKAFVKGVPATYMATSMVSWVGGSQPHTNMPPFLCVNFIISLFGIYPSPT</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="54" xmlns="http://uniprot.org/uniprot">
    <accession>A9BMZ3</accession>
    <name>A9BMZ3_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Putative transcriptional regulator</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_5059</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX37688.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012206858.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_5059"/>
    <dbReference type="PRIDE" id="A9BMZ3"/>
    <dbReference type="EnsemblBacteria" id="ABX37688">
        <property type="protein sequence ID" value="ABX37688"/>
        <property type="gene ID" value="Daci_5059"/>
    </dbReference>
    <dbReference type="GeneID" id="60689410"/>
    <dbReference type="KEGG" id="dac:Daci_5059"/>
    <dbReference type="eggNOG" id="COG1733">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_111585_6_0_4"/>
    <dbReference type="OMA" id="AFATRWV"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002577">
        <property type="entry name" value="HTH_HxlR"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036390">
        <property type="entry name" value="WH_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01638">
        <property type="entry name" value="HxlR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46785">
        <property type="entry name" value="SSF46785"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HTH hxlR-type" evidence="1">
        <location>
            <begin position="19"/>
            <end position="96"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF01638"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX37688.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="101" mass="11385" checksum="B61BDDAA10C74C71" modified="2008-01-15" version="1">MSSKENAAINQLFEKLECRYALRVLWALRDGHPQTFRLLQDSVGGITPNTLNTRIKELRECGLLEHGSDGYTVTLAGQDLLKRLSDVQAFANRWVAARAKK</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="72" xmlns="http://uniprot.org/uniprot">
    <accession>A9BNF2</accession>
    <name>A9BNF2_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="7">Threonine synthase</fullName>
            <ecNumber evidence="7">4.2.3.1</ecNumber>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ordered locus">Daci_5218</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="8" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="1 4">
            <name>pyridoxal 5'-phosphate</name>
            <dbReference type="ChEBI" id="CHEBI:597326"/>
        </cofactor>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the threonine synthase family.</text>
    </comment>
    <dbReference type="EC" id="4.2.3.1" evidence="7"/>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX37847.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012207017.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_5218"/>
    <dbReference type="PRIDE" id="A9BNF2"/>
    <dbReference type="EnsemblBacteria" id="ABX37847">
        <property type="protein sequence ID" value="ABX37847"/>
        <property type="gene ID" value="Daci_5218"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_5218"/>
    <dbReference type="eggNOG" id="COG0498">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_015170_1_0_4"/>
    <dbReference type="OMA" id="CEFASSA"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004795">
        <property type="term" value="F:threonine synthase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.1100">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.1380.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001926">
        <property type="entry name" value="PLP-dep"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029144">
        <property type="entry name" value="Thr_synth_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037158">
        <property type="entry name" value="Thr_synth_N_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004450">
        <property type="entry name" value="Thr_synthase-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036052">
        <property type="entry name" value="Trypto_synt_PLP_dependent"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00291">
        <property type="entry name" value="PALP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF14821">
        <property type="entry name" value="Thr_synth_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53686">
        <property type="entry name" value="SSF53686"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00260">
        <property type="entry name" value="thrC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="7" id="KW-0456">Lyase</keyword>
    <keyword evidence="3 4" id="KW-0663">Pyridoxal phosphate</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Thr_synth_N" evidence="6">
        <location>
            <begin position="3"/>
            <end position="83"/>
        </location>
    </feature>
    <feature type="domain" description="PALP" evidence="5">
        <location>
            <begin position="92"/>
            <end position="337"/>
        </location>
    </feature>
    <feature type="modified residue" description="N6-(pyridoxal phosphate)lysine" evidence="4">
        <location>
            <position position="117"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001933"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00005517"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022898"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="PIRSR" id="PIRSR604450-51"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="Pfam" id="PF00291"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="Pfam" id="PF14821"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="ABX37847.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="475" mass="52456" checksum="FD770DECCD9A8446" modified="2008-01-15" version="1">MLYLSTRGHADRKRFCDILLEGLAPDGGLYLPEHYPQIDAARLGELRSIYKEQGYAALAFEILSLYIDDIPAEDLRALCAKTYTQQVFGTAEITPLRPLEDGLWLEALSNGPTLAFKDMAMQLLGNLFEYELGRRGEELNILGATSGDTGSAAEYAMRGKKGVRVFMTSPRGRMSPFQQAQMFSLQDANIHNIAIEGVFDDCQDIVKAVSNDHAFKAKYKIGTVNSINWARLLAQVVYYFAGYLQATQGNDQKVSFTVPSGNFGNICAGHVARQMGLPIARLVVATNENDVLDEFFRTGAYVVRGSEHTYETSSPSMDISKASNFERFVFDLLGRDGQATRELFAEGVARQGRFDLGGNPLFQEAAARYGFVSGKSTHADRLATIRDTFERFGTMIDTHTADGVKVAREQLQSGVPMIVLETALPIKFAATIEEALGRLPDRPAKFEGIEDLPKRVTDLPADAEQVKAYIARHCD</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="77" xmlns="http://uniprot.org/uniprot">
    <accession>A9BNG8</accession>
    <name>A9BNG8_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Transcriptional regulator, LysR family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Daci_5234</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="4" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the LysR transcriptional regulatory family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX37863.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012207033.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_5234"/>
    <dbReference type="PRIDE" id="A9BNG8"/>
    <dbReference type="EnsemblBacteria" id="ABX37863">
        <property type="protein sequence ID" value="ABX37863"/>
        <property type="gene ID" value="Daci_5234"/>
    </dbReference>
    <dbReference type="GeneID" id="60689579"/>
    <dbReference type="KEGG" id="dac:Daci_5234"/>
    <dbReference type="eggNOG" id="COG0583">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_039613_6_0_4"/>
    <dbReference type="OMA" id="RIHVPGF"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003700">
        <property type="term" value="F:DNA-binding transcription factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005119">
        <property type="entry name" value="LysR_subst-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000847">
        <property type="entry name" value="Tscrpt_reg_HTH_LysR"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036390">
        <property type="entry name" value="WH_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00126">
        <property type="entry name" value="HTH_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03466">
        <property type="entry name" value="LysR_substrate"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46785">
        <property type="entry name" value="SSF46785"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50931">
        <property type="entry name" value="HTH_LYSR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HTH lysR-type" evidence="2">
        <location>
            <begin position="12"/>
            <end position="69"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00009437"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS50931"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ABX37863.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="314" mass="34113" checksum="5A6739634F973352" modified="2008-01-15" version="1">MKNSERSFARRIDLTSLQLFVAVCELGSIGRAAEREFIAASAVSKRLSDLEATVDTALLYRHSRGVTLTPAGESLLHHARNVLYGLERMQGELSEYADGVRGHVRIHANMSAIVQFLPEDLGVFARKHGQVKIDLQEQLSPAVLAAVQEGTADIGICSMAYMPLGNGQATPVLQHRPYREDRLVVVVPEQHALAHSDSVAFADVLEWDIVSLQAGSSISLAMRAAAAQAGHALHQRIQVTSLDAMCRMIDNGLGVGLIPDRAFELMHGVGHLRALELSDDWARRELSIVARDFDALPVTARLLVEHLSPPASAS</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="68" xmlns="http://uniprot.org/uniprot">
    <accession>A9BNP8</accession>
    <name>A9BNP8_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="7">Rhomboid family protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ordered locus">Daci_5314</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="8" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX37943.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012207112.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_5314"/>
    <dbReference type="MEROPS" id="S54.027"/>
    <dbReference type="PRIDE" id="A9BNP8"/>
    <dbReference type="EnsemblBacteria" id="ABX37943">
        <property type="protein sequence ID" value="ABX37943"/>
        <property type="gene ID" value="Daci_5314"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_5314"/>
    <dbReference type="eggNOG" id="COG0705">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_040545_1_0_4"/>
    <dbReference type="OMA" id="MYAVMYR"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004252">
        <property type="term" value="F:serine-type endopeptidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.1540.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR022764">
        <property type="entry name" value="Peptidase_S54_rhomboid_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035952">
        <property type="entry name" value="Rhomboid-like_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01694">
        <property type="entry name" value="Rhomboid"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF144091">
        <property type="entry name" value="SSF144091"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4 5" id="KW-0472">Membrane</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 5" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="3 5" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="16"/>
            <end position="33"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="166"/>
            <end position="184"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="214"/>
            <end position="232"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="244"/>
            <end position="264"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="276"/>
            <end position="295"/>
        </location>
    </feature>
    <feature type="domain" description="Rhomboid" evidence="6">
        <location>
            <begin position="148"/>
            <end position="299"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="Pfam" id="PF01694"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="ABX37943.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="496" mass="55444" checksum="E6D531EDDBA47C56" modified="2008-01-15" version="1">MFYAIPLEDRPRWSNPPWMTLLIILVNVLVFFGPQRSEERAQQAAAQFYAASALPGIELPRFVDWLQRTDSPIAKQAKVLQKKGLVEPLLQRMEQEPAFLALLRSGQIVPESDPLHERWQTDRSRYEALQPEPFTTRWAKNYALDAPMRPVTWITAAFLHVDTSHLVGNMLFLFMFGFSVELMLGRGTYLLFYLLGAVGGSVLSGWAYAGTGSYGLGASGAVAALMGMYAVMYRLRRVRFFYQLFFYFNYVTAPALILLPAWIANEVLQHFFSGQSAGYMAHLGGLLTGATLMALHLRRKPRAALAGCHSAPDDGFDAHVANARRLGQALDMEGALRAWRAAAQLRPADTEVLRAWFAAARYAPASEDFHRAARRIFRLPARDAATLAWQHASYRIYLDLARPGARIAPEDMARLVRRFTRARAFDDAEKLCRALLQAAPGQPGLGETLCLLVNGLLQQGLAQRARAWLPQLQRWAPDEAVTRLLLDGQARSQATA</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="71" xmlns="http://uniprot.org/uniprot">
    <accession>A9BNS1</accession>
    <name>A9BNS1_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="12">Ste24 endopeptidase</fullName>
            <ecNumber evidence="12">3.4.24.84</ecNumber>
        </submittedName>
    </protein>
    <gene>
        <name evidence="12" type="ordered locus">Daci_5337</name>
    </gene>
    <organism evidence="12 13">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="12 13" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="13">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="13" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="13">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="7">
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </cofactor>
        <text evidence="7">Binds 1 zinc ion per subunit.</text>
    </comment>
    <dbReference type="EC" id="3.4.24.84" evidence="12"/>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX37966.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_5337"/>
    <dbReference type="PRIDE" id="A9BNS1"/>
    <dbReference type="EnsemblBacteria" id="ABX37966">
        <property type="protein sequence ID" value="ABX37966"/>
        <property type="gene ID" value="Daci_5337"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_5337"/>
    <dbReference type="eggNOG" id="COG0501">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_406959_0_0_4"/>
    <dbReference type="OMA" id="LPFKIYK"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004222">
        <property type="term" value="F:metalloendopeptidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0071586">
        <property type="term" value="P:CAAX-box protein processing"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd07343">
        <property type="entry name" value="M48A_Zmpste24p_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027057">
        <property type="entry name" value="CAXX_Prtase_1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001915">
        <property type="entry name" value="Peptidase_M48"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR032456">
        <property type="entry name" value="Peptidase_M48_N"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01435">
        <property type="entry name" value="Peptidase_M48"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF16491">
        <property type="entry name" value="Peptidase_M48_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3 12" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="9" id="KW-0472">Membrane</keyword>
    <keyword evidence="2 7" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="5" id="KW-0482">Metalloprotease</keyword>
    <keyword evidence="1" id="KW-0645">Protease</keyword>
    <keyword evidence="13" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="9" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="9" id="KW-1133">Transmembrane helix</keyword>
    <keyword evidence="4 7" id="KW-0862">Zinc</keyword>
    <feature type="transmembrane region" description="Helical" evidence="9">
        <location>
            <begin position="253"/>
            <end position="271"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="9">
        <location>
            <begin position="312"/>
            <end position="333"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="9">
        <location>
            <begin position="353"/>
            <end position="377"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="9">
        <location>
            <begin position="398"/>
            <end position="418"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="9">
        <location>
            <begin position="424"/>
            <end position="443"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="9">
        <location>
            <begin position="541"/>
            <end position="565"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="9">
        <location>
            <begin position="588"/>
            <end position="609"/>
        </location>
    </feature>
    <feature type="domain" description="Peptidase_M48_N" evidence="11">
        <location>
            <begin position="275"/>
            <end position="453"/>
        </location>
    </feature>
    <feature type="domain" description="Peptidase_M48" evidence="10">
        <location>
            <begin position="457"/>
            <end position="671"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="8">
        <location>
            <begin position="1"/>
            <end position="31"/>
        </location>
    </feature>
    <feature type="active site" evidence="6">
        <location>
            <position position="527"/>
        </location>
    </feature>
    <feature type="active site" description="Proton donor" evidence="6">
        <location>
            <position position="621"/>
        </location>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <position position="526"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
            <note>catalytic</note>
        </ligand>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <position position="530"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
            <note>catalytic</note>
        </ligand>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <position position="617"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
            <note>catalytic</note>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022670"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022833"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023049"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="PIRSR" id="PIRSR627057-1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="PIRSR" id="PIRSR627057-2"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="10">
        <source>
            <dbReference type="Pfam" id="PF01435"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="11">
        <source>
            <dbReference type="Pfam" id="PF16491"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="EMBL" id="ABX37966.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="13">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="675" mass="73025" checksum="92D5C8C25D71A3E6" modified="2008-01-15" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="61" xmlns="http://uniprot.org/uniprot">
    <accession>A9BNT9</accession>
    <name>A9BNT9_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Glutathione-dependent formaldehyde-activating GFA</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ordered locus">Daci_5355</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="5" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the Gfa family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX37984.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012207153.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_5355"/>
    <dbReference type="PRIDE" id="A9BNT9"/>
    <dbReference type="EnsemblBacteria" id="ABX37984">
        <property type="protein sequence ID" value="ABX37984"/>
        <property type="gene ID" value="Daci_5355"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_5355"/>
    <dbReference type="eggNOG" id="COG3791">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_055491_7_4_4"/>
    <dbReference type="OMA" id="CHCGRIA"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016846">
        <property type="term" value="F:carbon-sulfur lyase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006913">
        <property type="entry name" value="CENP-V/GFA"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011057">
        <property type="entry name" value="Mss4-like_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04828">
        <property type="entry name" value="GFA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51316">
        <property type="entry name" value="SSF51316"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51891">
        <property type="entry name" value="CENP_V_GFA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="CENP-V/GFA" evidence="3">
        <location>
            <begin position="3"/>
            <end position="111"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00005495"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="PROSITE" id="PS51891"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="ABX37984.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="115" mass="12965" checksum="0B1FC9C3B9B97605" modified="2008-01-15" version="1">MKYHGSCHCGGIAFDVEGELTQAMACNCSICARKGALMWFVPREQLQLSTPEEQMRTYTFHRHLIQHRFCPTCGIHPFGEAIDPQGRHMAAVNVRCLEGVDPEALRITRYDGRSA</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="58" xmlns="http://uniprot.org/uniprot">
    <accession>A9BP29</accession>
    <name>A9BP29_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Esterase/lipase/thioesterase family active site</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Daci_5445</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="4" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX38074.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_5445"/>
    <dbReference type="PRIDE" id="A9BP29"/>
    <dbReference type="EnsemblBacteria" id="ABX38074">
        <property type="protein sequence ID" value="ABX38074"/>
        <property type="gene ID" value="Daci_5445"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_5445"/>
    <dbReference type="eggNOG" id="COG1073">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_029375_6_2_4"/>
    <dbReference type="OMA" id="EDCGYTN"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.1820">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029058">
        <property type="entry name" value="AB_hydrolase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR022742">
        <property type="entry name" value="Hydrolase_4"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12146">
        <property type="entry name" value="Hydrolase_4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53474">
        <property type="entry name" value="SSF53474"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="12"/>
            <end position="33"/>
        </location>
    </feature>
    <feature type="domain" description="Hydrolase_4" evidence="2">
        <location>
            <begin position="77"/>
            <end position="205"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF12146"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ABX38074.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="295" mass="31882" checksum="9A7DF88C233ECCE7" modified="2008-01-15" version="1">MLSRLRNLSWPAALLMAGLSGLALLMAAAWLVGSLLSQPDHQPVGAPPADWPVQTLQLPTDEGGQVRGWFAKGQPGHGAVLLLHGVYADRLAMLARARMLHRQGYSVCLIDLPAHGESSGERISFGMVEGAGVRAAMAYVRQQLPGEKVAVIGTSLGGAALLLSHVAPGPDAVVLESVFPDIRQAIDNRVRAHIGWLADVVTPLLAWQLPLRLHLELAQLRPIDHVRALGAPVLIAAGLQDRHTTPAETRELFDAAREPKALWMVEGAAHVDLYDYAPKPYEQRVLGFLDRYLGH</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="59" xmlns="http://uniprot.org/uniprot">
    <accession>A9BPA6</accession>
    <name>A9BPA6_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="7">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ordered locus">Daci_0023</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="8" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Periplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the CpxP/Spy family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX32670.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012201963.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_0023"/>
    <dbReference type="PRIDE" id="A9BPA6"/>
    <dbReference type="EnsemblBacteria" id="ABX32670">
        <property type="protein sequence ID" value="ABX32670"/>
        <property type="gene ID" value="Daci_0023"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_0023"/>
    <dbReference type="eggNOG" id="ENOG5032U6V">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_121288_0_0_4"/>
    <dbReference type="OMA" id="MRENGET"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0042597">
        <property type="term" value="C:periplasmic space"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012899">
        <property type="entry name" value="LTXXQ"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006311">
        <property type="entry name" value="TAT_signal"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07813">
        <property type="entry name" value="LTXXQ"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51318">
        <property type="entry name" value="TAT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-0574">Periplasm</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 6" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="6">
        <location>
            <begin position="1"/>
            <end position="28"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5002732374" evidence="6">
        <location>
            <begin position="29"/>
            <end position="184"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="5">
        <location>
            <begin position="147"/>
            <end position="184"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="5">
        <location>
            <begin position="153"/>
            <end position="175"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004418"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00008441"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022729"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022764"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="ABX32670.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="184" mass="20103" checksum="FDD4C00E572DB039" modified="2008-01-15" version="1">MTTTFRRTLASAAAATALLASFALPSYAQTAAAAAPAAAATTTAPKPDRAMHKHGDRMEHMQQRIAKLKADLKLTPAQETAWNTYAATFKPGERPQRMEREDFAKLTTPQRIDKMREMRAQRAADADRRGEATKAFYAQLDASQQKTFDAATLHKGHPGHHGMDHGPRHDHKSGQARPAPAPAQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="65" xmlns="http://uniprot.org/uniprot">
    <accession>A9BPD4</accession>
    <name>A9BPD4_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Formiminoglutamate deiminase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_0155</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX32801.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012202094.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_0155"/>
    <dbReference type="PRIDE" id="A9BPD4"/>
    <dbReference type="EnsemblBacteria" id="ABX32801">
        <property type="protein sequence ID" value="ABX32801"/>
        <property type="gene ID" value="Daci_0155"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_0155"/>
    <dbReference type="eggNOG" id="COG0402">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_012358_3_0_4"/>
    <dbReference type="OMA" id="MCPTTER"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016810">
        <property type="term" value="F:hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.30.40.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006680">
        <property type="entry name" value="Amidohydro-rel"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010252">
        <property type="entry name" value="HutF"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011059">
        <property type="entry name" value="Metal-dep_hydrolase_composite"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR032466">
        <property type="entry name" value="Metal_Hydrolase"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43608">
        <property type="entry name" value="PTHR43608"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01979">
        <property type="entry name" value="Amidohydro_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51556">
        <property type="entry name" value="SSF51556"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR02022">
        <property type="entry name" value="hutF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Amidohydro-rel" evidence="1">
        <location>
            <begin position="57"/>
            <end position="438"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF01979"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX32801.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="466" mass="49688" checksum="2A9D45EEE9220101" modified="2008-01-15" version="1">MSGIDPTPDSRTLFAEHALLPTGWARNVLLRWDGAGRLLAVQADAPPGSAPRAPGPVLPGMPNLHSHAFQRAFAGLTEYRAEAQDSFWSWRDLMYRFAARITPESLEAIATWLYVEMLEAGYTSVCEFHYVHHDRDGRPYADDATLSLALLRAARKAGMGITLLPVLYQTSGFGGKPPRADQARFIRSTDNMLALLQRLLPEARAQGAALGLAPHSLRAVPPDSLRVAVEGLAALDARAPVHIHIAEQTQEVDDCLAWSGQRPVQWLLEHAPVDARWCLVHATHMTPGEYAGAARSGAVAGICPTTEANLGDGIFDMPQWLGHGGAWGVGSDSHACVNAAEELLMLEYSQRLSLRQRNVLAGSDPQVGTALWTAAVQGGAQAAGRSVAGLAVGQQADFLALDAGHVALAGLPVQAMVSAHVFGSHRSSALHSLWVGGERRVQAGRHALHEAAAHGFVAARAATLQS</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="55" xmlns="http://uniprot.org/uniprot">
    <accession>A9BPF6</accession>
    <name>A9BPF6_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Thiolase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_0177</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX32823.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012202116.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_0177"/>
    <dbReference type="PRIDE" id="A9BPF6"/>
    <dbReference type="EnsemblBacteria" id="ABX32823">
        <property type="protein sequence ID" value="ABX32823"/>
        <property type="gene ID" value="Daci_0177"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_0177"/>
    <dbReference type="eggNOG" id="COG0183">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_035425_2_1_4"/>
    <dbReference type="OMA" id="SSPDQYT"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016747">
        <property type="term" value="F:acyltransferase activity, transferring groups other than amino-acyl groups"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.47.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002155">
        <property type="entry name" value="Thiolase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016039">
        <property type="entry name" value="Thiolase-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020617">
        <property type="entry name" value="Thiolase_C"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02803">
        <property type="entry name" value="Thiolase_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF000429">
        <property type="entry name" value="Ac-CoA_Ac_transf"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53901">
        <property type="entry name" value="SSF53901"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Thiolase_C" evidence="1">
        <location>
            <begin position="265"/>
            <end position="374"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF02803"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX32823.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="403" mass="42171" checksum="30093ED9BD10270D" modified="2008-01-15" version="1">MSARIPQSTLDAAAVNRPLRGRVAIAGAATYGCGEAPGMDDMTLLVRAAHAAVADAGLTMQDIDGLATCSVNASMWTMPVIEHLGINPTYVDGTMIGGSSFIAHLLPAIRALEAGQCKAVLVCYGSAQRSATFGRKEGQAARRFLDPQPYEFPYEPVLPVTAYALAAARHMHEFGTTREQLAEVAVAARAWAQLNPEAFMRDPLTIEDVLSARPIASPLSVRDCCLVTDGAGAIVLVRGERARDLPRPPVYVLGNATAIWNRQISCMPDLTTTAAAQSGAQAFAMAGLTAADMDMAQVYDAFTINTLLFLEDLGFCAKGEGGAFVSKGGIAPGGRLAVNTNGGGLSCVHPGMYGIFALIEAVRQLRGEAGQRQLGRHRTAVVHGNGGTLSSQSTAVLGTAETL</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="77" xmlns="http://uniprot.org/uniprot">
    <accession>A9BPM2</accession>
    <name>A9BPM2_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Transcriptional regulator, LysR family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Daci_0243</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="4" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the LysR transcriptional regulatory family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX32889.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012202182.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_0243"/>
    <dbReference type="PRIDE" id="A9BPM2"/>
    <dbReference type="EnsemblBacteria" id="ABX32889">
        <property type="protein sequence ID" value="ABX32889"/>
        <property type="gene ID" value="Daci_0243"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_0243"/>
    <dbReference type="eggNOG" id="COG0583">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_039613_6_2_4"/>
    <dbReference type="OMA" id="LPAPYCR"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003700">
        <property type="term" value="F:DNA-binding transcription factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005119">
        <property type="entry name" value="LysR_subst-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000847">
        <property type="entry name" value="Tscrpt_reg_HTH_LysR"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036390">
        <property type="entry name" value="WH_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00126">
        <property type="entry name" value="HTH_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03466">
        <property type="entry name" value="LysR_substrate"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00039">
        <property type="entry name" value="HTHLYSR"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46785">
        <property type="entry name" value="SSF46785"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50931">
        <property type="entry name" value="HTH_LYSR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HTH lysR-type" evidence="2">
        <location>
            <begin position="1"/>
            <end position="58"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00009437"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS50931"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ABX32889.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="302" mass="33435" checksum="66A4061725E4332C" modified="2008-01-15" version="1">MDLRALRYFVEVVRCNSFTRAAEALHVTQPTISKMVRALEEELGGPLLLREGRGVQLTDAGQVVHARGLQVLEQSRQLLQEVAEVDGIARGSLSVGIMPTAGHYMAPVIARFQQLHPGVELHVQEQGARAQRQLLLDGKLDMALGLHGAGEAGGDLAGEGLEYCTIAHQKTRVAFAAHEVPDPDAPVHWSELARRPFVFYTSDFALHQAVLEHCAAAGFSPQVRLQTRYWDFIGDLVAEGVGVAVMFEHVIARFDPRRVSSRPLVGPELHWDVVQLWRSGYLSRAARAWLECVRAVYPDDNR</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="54" xmlns="http://uniprot.org/uniprot">
    <accession>A9BPP5</accession>
    <name>A9BPP5_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Putative lipoprotein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Daci_0368</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="4" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX33014.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012202307.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_0368"/>
    <dbReference type="PRIDE" id="A9BPP5"/>
    <dbReference type="EnsemblBacteria" id="ABX33014">
        <property type="protein sequence ID" value="ABX33014"/>
        <property type="gene ID" value="Daci_0368"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_0368"/>
    <dbReference type="eggNOG" id="COG3218">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_091341_1_0_4"/>
    <dbReference type="OMA" id="YANSHWT"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005586">
        <property type="entry name" value="ABC_trans_aux"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006311">
        <property type="entry name" value="TAT_signal"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03886">
        <property type="entry name" value="ABC_trans_aux"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51318">
        <property type="entry name" value="TAT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-0449">Lipoprotein</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="1">
        <location>
            <begin position="1"/>
            <end position="22"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5002735887" evidence="1">
        <location>
            <begin position="23"/>
            <end position="222"/>
        </location>
    </feature>
    <feature type="domain" description="ABC_trans_aux" evidence="2">
        <location>
            <begin position="44"/>
            <end position="213"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF03886"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ABX33014.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="222" mass="23046" checksum="1258812D338375FB" modified="2008-01-15" version="1">MPLSRKTAVASAGLAAALILLAGCSALPQPPAQPARYDFGLAPLSAPAQSATSAAPQARTPLALADVEAPALSDGSTAMFYRLAYANGQELRPYQLARWSQPPALLLQQRLRSQLGLQRPVLASSESVAQPRLQGAVPTLLRVDIEEFSQVFYAPGSSAGVVRLRATLVEQSGAVDRLLGQKLFEVRSPAASGDAAGGAKALATAADAAIAQIDEWLGQQGH</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="54" xmlns="http://uniprot.org/uniprot">
    <accession>A9BPW6</accession>
    <name>A9BPW6_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">CopG domain protein DNA-binding domain protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_0439</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX33085.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012202375.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_0439"/>
    <dbReference type="PRIDE" id="A9BPW6"/>
    <dbReference type="EnsemblBacteria" id="ABX33085">
        <property type="protein sequence ID" value="ABX33085"/>
        <property type="gene ID" value="Daci_0439"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_0439"/>
    <dbReference type="eggNOG" id="COG4962">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_117977_0_0_4"/>
    <dbReference type="OMA" id="PDNSERM"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006355">
        <property type="term" value="P:regulation of transcription, DNA-templated"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.1220.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013321">
        <property type="entry name" value="Arc_rbn_hlx_hlx"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010985">
        <property type="entry name" value="Ribbon_hlx_hlx"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47598">
        <property type="entry name" value="SSF47598"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="2" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="coiled-coil region" evidence="1">
        <location>
            <begin position="50"/>
            <end position="77"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX33085.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="154" mass="17316" checksum="8359947D36B9A215" modified="2008-01-15" version="1">MSHYRLNLFIQPEHAKRLDELAAKKGVSKSSIVAAALASWLSPDAADQREAAIAKRLDRLSRQADRMERDQNIAIETLALFIRYYLTVSTPVPEAHQDAARAQGKARFEQFTEQLGRHLLRGRSLVRDVVEELHPDPMRMEDAAAAAQAQERAS</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-01-19" version="59" xmlns="http://uniprot.org/uniprot">
    <accession>A9BQ78</accession>
    <name>A9BQ78_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Flagellar biosynthesis protein FliO</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ordered locus">Daci_0647</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="6" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX33293.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012202579.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_0647"/>
    <dbReference type="EnsemblBacteria" id="ABX33293">
        <property type="protein sequence ID" value="ABX33293"/>
        <property type="gene ID" value="Daci_0647"/>
    </dbReference>
    <dbReference type="GeneID" id="60690988"/>
    <dbReference type="KEGG" id="dac:Daci_0647"/>
    <dbReference type="eggNOG" id="COG3190">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_113213_5_0_4"/>
    <dbReference type="OMA" id="AQQINCL"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0044781">
        <property type="term" value="P:bacterial-type flagellum organization"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR022781">
        <property type="entry name" value="Flagellar_biosynth_FliO"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04347">
        <property type="entry name" value="FliO"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="5" id="KW-0966">Cell projection</keyword>
    <keyword evidence="5" id="KW-0969">Cilium</keyword>
    <keyword evidence="5" id="KW-0282">Flagellum</keyword>
    <keyword evidence="4" id="KW-0472">Membrane</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="3" id="KW-1133">Transmembrane helix</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="ABX33293.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="111" mass="11477" checksum="25506C26E4E622FD" modified="2008-01-15" version="1">MGPLWPTLLTVVALVTAMAALPWLLRRFQQRTAALRGAAGLQSRVLGAVGVGPQQRVVTVEVGEGAQTVRLVLGVTAQSIQCLHVLQAPAPADFSAAMAQARSLPADGANV</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="93" xmlns="http://uniprot.org/uniprot">
    <accession>A9BQ86</accession>
    <name>A9BQ86_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="5">Bifunctional glutamine synthetase adenylyltransferase/adenylyl-removing enzyme</fullName>
        </recommendedName>
        <alternativeName>
            <fullName evidence="5">ATP:glutamine synthetase adenylyltransferase</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="5">ATase</fullName>
        </alternativeName>
        <domain>
            <recommendedName>
                <fullName evidence="5">Glutamine synthetase adenylyl-L-tyrosine phosphorylase</fullName>
                <ecNumber evidence="5">2.7.7.89</ecNumber>
            </recommendedName>
            <alternativeName>
                <fullName evidence="5">Adenylyl removase</fullName>
                <shortName evidence="5">AR</shortName>
                <shortName evidence="5">AT-N</shortName>
            </alternativeName>
        </domain>
        <domain>
            <recommendedName>
                <fullName evidence="5">Glutamine synthetase adenylyl transferase</fullName>
                <ecNumber evidence="5">2.7.7.42</ecNumber>
            </recommendedName>
            <alternativeName>
                <fullName evidence="5">Adenylyl transferase</fullName>
                <shortName evidence="5">AT</shortName>
                <shortName evidence="5">AT-C</shortName>
            </alternativeName>
        </domain>
    </protein>
    <gene>
        <name evidence="5" type="primary">glnE</name>
        <name evidence="8" type="ordered locus">Daci_0850</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="9" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="5">Involved in the regulation of glutamine synthetase GlnA, a key enzyme in the process to assimilate ammonia. When cellular nitrogen levels are high, the C-terminal adenylyl transferase (AT) inactivates GlnA by covalent transfer of an adenylyl group from ATP to specific tyrosine residue of GlnA, thus reducing its activity. Conversely, when nitrogen levels are low, the N-terminal adenylyl removase (AR) activates GlnA by removing the adenylyl group by phosphorolysis, increasing its activity. The regulatory region of GlnE binds the signal transduction protein PII (GlnB) which indicates the nitrogen status of the cell.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="5">
            <text>[glutamine synthetase]-L-tyrosine + ATP = [glutamine synthetase]-O(4)-(5'-adenylyl)-L-tyrosine + diphosphate</text>
            <dbReference type="Rhea" id="RHEA:18589"/>
            <dbReference type="Rhea" id="RHEA-COMP:10660"/>
            <dbReference type="Rhea" id="RHEA-COMP:10661"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:33019"/>
            <dbReference type="ChEBI" id="CHEBI:46858"/>
            <dbReference type="ChEBI" id="CHEBI:83624"/>
            <dbReference type="EC" id="2.7.7.42"/>
        </reaction>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="5">
            <text>[glutamine synthetase]-O(4)-(5'-adenylyl)-L-tyrosine + phosphate = [glutamine synthetase]-L-tyrosine + ADP</text>
            <dbReference type="Rhea" id="RHEA:43716"/>
            <dbReference type="Rhea" id="RHEA-COMP:10660"/>
            <dbReference type="Rhea" id="RHEA-COMP:10661"/>
            <dbReference type="ChEBI" id="CHEBI:43474"/>
            <dbReference type="ChEBI" id="CHEBI:46858"/>
            <dbReference type="ChEBI" id="CHEBI:83624"/>
            <dbReference type="ChEBI" id="CHEBI:456216"/>
            <dbReference type="EC" id="2.7.7.89"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="5">
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </cofactor>
    </comment>
    <comment type="similarity">
        <text evidence="5">Belongs to the GlnE family.</text>
    </comment>
    <dbReference type="EC" id="2.7.7.89" evidence="5"/>
    <dbReference type="EC" id="2.7.7.42" evidence="5"/>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX33496.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_0850"/>
    <dbReference type="PRIDE" id="A9BQ86"/>
    <dbReference type="EnsemblBacteria" id="ABX33496">
        <property type="protein sequence ID" value="ABX33496"/>
        <property type="gene ID" value="Daci_0850"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_0850"/>
    <dbReference type="eggNOG" id="COG1391">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_006233_0_1_4"/>
    <dbReference type="OMA" id="EFMVQYA"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008882">
        <property type="term" value="F:[glutamate-ammonia-ligase] adenylyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0047388">
        <property type="term" value="F:[glutamine synthetase]-adenylyl-L-tyrosine phosphorylase"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016874">
        <property type="term" value="F:ligase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000287">
        <property type="term" value="F:magnesium ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008152">
        <property type="term" value="P:metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000820">
        <property type="term" value="P:regulation of glutamine family amino acid metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.460.10">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00802">
        <property type="entry name" value="GlnE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023057">
        <property type="entry name" value="GlnE"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005190">
        <property type="entry name" value="GlnE_rpt_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043519">
        <property type="entry name" value="NT_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013546">
        <property type="entry name" value="PII_UdlTrfase/GS_AdlTrfase"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30621">
        <property type="entry name" value="PTHR30621"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08335">
        <property type="entry name" value="GlnD_UR_UTase"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03710">
        <property type="entry name" value="GlnE"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF81301">
        <property type="entry name" value="SSF81301"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3 5" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="8" id="KW-0436">Ligase</keyword>
    <keyword evidence="4 5" id="KW-0460">Magnesium</keyword>
    <keyword evidence="5" id="KW-0511">Multifunctional enzyme</keyword>
    <keyword evidence="2 5" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="1 5 8" id="KW-0548">Nucleotidyltransferase</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="5 8" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="GlnE" evidence="6">
        <location>
            <begin position="44"/>
            <end position="249"/>
        </location>
    </feature>
    <feature type="domain" description="GlnD_UR_UTase" evidence="7">
        <location>
            <begin position="280"/>
            <end position="423"/>
        </location>
    </feature>
    <feature type="domain" description="GlnE" evidence="6">
        <location>
            <begin position="536"/>
            <end position="778"/>
        </location>
    </feature>
    <feature type="domain" description="GlnD_UR_UTase" evidence="7">
        <location>
            <begin position="800"/>
            <end position="887"/>
        </location>
    </feature>
    <feature type="region of interest" description="Adenylyl removase" evidence="5">
        <location>
            <begin position="1"/>
            <end position="431"/>
        </location>
    </feature>
    <feature type="region of interest" description="Adenylyl transferase" evidence="5">
        <location>
            <begin position="435"/>
            <end position="921"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022695"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022842"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00802"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="Pfam" id="PF03710"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="Pfam" id="PF08335"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="ABX33496.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="921" mass="102461" checksum="D03DF6F82913ACEC" modified="2008-01-15" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="76" xmlns="http://uniprot.org/uniprot">
    <accession>A9BQF9</accession>
    <name>A9BQF9_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Transcriptional regulator, TrmB</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_0923</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX33569.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012202855.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_0923"/>
    <dbReference type="PRIDE" id="A9BQF9"/>
    <dbReference type="EnsemblBacteria" id="ABX33569">
        <property type="protein sequence ID" value="ABX33569"/>
        <property type="gene ID" value="Daci_0923"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_0923"/>
    <dbReference type="eggNOG" id="COG0640">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_097806_6_4_4"/>
    <dbReference type="OMA" id="NPKRLMI"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003700">
        <property type="term" value="F:DNA-binding transcription factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd00090">
        <property type="entry name" value="HTH_ARSR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011991">
        <property type="entry name" value="ArsR-like_HTH"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001845">
        <property type="entry name" value="HTH_ArsR_DNA-bd_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036390">
        <property type="entry name" value="WH_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01022">
        <property type="entry name" value="HTH_5"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00778">
        <property type="entry name" value="HTHARSR"/>
    </dbReference>
    <dbReference type="SMART" id="SM00418">
        <property type="entry name" value="HTH_ARSR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46785">
        <property type="entry name" value="SSF46785"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50987">
        <property type="entry name" value="HTH_ARSR_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HTH arsR-type" evidence="1">
        <location>
            <begin position="12"/>
            <end position="105"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS50987"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX33569.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="105" mass="11675" checksum="4A7C0D550239EE5D" modified="2008-01-15" version="1">MTEPTLSPEQAFLQQGAARAAALLRAVGNERRLLVLCLLIEHGELSVGELLQQIPLSQSALSQHLARMREEGLVAYRRESQTLYYRIANPDVQKLVATLKSIFCA</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="86" xmlns="http://uniprot.org/uniprot">
    <accession>A9BQW0</accession>
    <name>A9BQW0_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Transcriptional regulator, LysR family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Daci_0269</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="4" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the LysR transcriptional regulatory family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX32915.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_0269"/>
    <dbReference type="PRIDE" id="A9BQW0"/>
    <dbReference type="EnsemblBacteria" id="ABX32915">
        <property type="protein sequence ID" value="ABX32915"/>
        <property type="gene ID" value="Daci_0269"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_0269"/>
    <dbReference type="eggNOG" id="COG0583">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_039613_16_3_4"/>
    <dbReference type="OMA" id="INCVGGY"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003700">
        <property type="term" value="F:DNA-binding transcription factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005119">
        <property type="entry name" value="LysR_subst-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000847">
        <property type="entry name" value="Tscrpt_reg_HTH_LysR"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036390">
        <property type="entry name" value="WH_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00126">
        <property type="entry name" value="HTH_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03466">
        <property type="entry name" value="LysR_substrate"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46785">
        <property type="entry name" value="SSF46785"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50931">
        <property type="entry name" value="HTH_LYSR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HTH lysR-type" evidence="2">
        <location>
            <begin position="33"/>
            <end position="88"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00009437"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS50931"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ABX32915.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="337" mass="37164" checksum="39B56C692D8D32ED" modified="2008-01-15" version="1">MVCNDSDCIEGRFLDKLAVSDLFVRLMQTIKLLEQMQIFSRVAEMASFTRAADSMGLPKASVSQAVQQLEARLGTRLLHRTTRRVQLTQDGQACYERCQDLLADVDEFQGQFQQAGDAPLQGKVRLDMTTGLARHVVMPLLPQLLQSHPALELELSCTERRVDLVREGFDCVLRLGPVDEPGLVARPLGLVALATCASPGYVQAHGLPATLQDLGGHRLVHYQRTLGARPLGFEYEEDGQPRYLPMAGALTVNNAEAYLAACQAGLGLIQVPRLAVQPLLDAGELVEVLPRHPPPPMPLYLIYAQRRQLPRRVRVLMDWLAEAVLPWTLGAGPAEKP</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="55" xmlns="http://uniprot.org/uniprot">
    <accession>A9BQZ0</accession>
    <name>A9BQZ0_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="3">YD repeat protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Daci_0299</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="4" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX32945.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_0299"/>
    <dbReference type="PRIDE" id="A9BQZ0"/>
    <dbReference type="EnsemblBacteria" id="ABX32945">
        <property type="protein sequence ID" value="ABX32945"/>
        <property type="gene ID" value="Daci_0299"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_0299"/>
    <dbReference type="eggNOG" id="COG3209">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_001218_0_1_4"/>
    <dbReference type="OMA" id="LNYNRHR"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045351">
        <property type="entry name" value="DUF6531"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001826">
        <property type="entry name" value="RHS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR022385">
        <property type="entry name" value="Rhs_assc_core"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR031325">
        <property type="entry name" value="RHS_repeat"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006530">
        <property type="entry name" value="YD"/>
    </dbReference>
    <dbReference type="Pfam" id="PF20148">
        <property type="entry name" value="DUF6531"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03527">
        <property type="entry name" value="RHS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF05593">
        <property type="entry name" value="RHS_repeat"/>
        <property type="match status" value="5"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00394">
        <property type="entry name" value="RHSPROTEIN"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR03696">
        <property type="entry name" value="Rhs_assc_core"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01643">
        <property type="entry name" value="YD_repeat_2x"/>
        <property type="match status" value="6"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="DUF6531" evidence="2">
        <location>
            <begin position="45"/>
            <end position="126"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="506"/>
            <end position="525"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="962"/>
            <end position="999"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="508"/>
            <end position="523"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="965"/>
            <end position="979"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF20148"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ABX32945.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="1525" mass="168402" checksum="6FBE4C891197F409" modified="2008-01-15" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="57" xmlns="http://uniprot.org/uniprot">
    <accession>A9BR00</accession>
    <name>A9BR00_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">EamA domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Daci_0309</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="4" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX32955.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012202248.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_0309"/>
    <dbReference type="PRIDE" id="A9BR00"/>
    <dbReference type="EnsemblBacteria" id="ABX32955">
        <property type="protein sequence ID" value="ABX32955"/>
        <property type="gene ID" value="Daci_0309"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_0309"/>
    <dbReference type="eggNOG" id="COG0697">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_055252_1_0_4"/>
    <dbReference type="OMA" id="WYPYRLL"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000620">
        <property type="entry name" value="EamA_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00892">
        <property type="entry name" value="EamA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="7"/>
            <end position="24"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="30"/>
            <end position="51"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="63"/>
            <end position="83"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="89"/>
            <end position="111"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="123"/>
            <end position="141"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="153"/>
            <end position="172"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="184"/>
            <end position="205"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="217"/>
            <end position="236"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="243"/>
            <end position="268"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="274"/>
            <end position="294"/>
        </location>
    </feature>
    <feature type="domain" description="EamA" evidence="2">
        <location>
            <begin position="6"/>
            <end position="134"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF00892"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ABX32955.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="299" mass="31091" checksum="476B636FBF9D7758" modified="2008-01-15" version="1">MHSPLPVLALLFNTLVWGLAWWPFRAMHEAGLHPLWATALMYALVLAGLVALRPASLRQALQYPVLILLGACAGSNNIAFNWAVTIGDVVRVVLLFYLMPAWSVLLAWKILGERPTPAALTRLLLAFGGVALVLVPEGTFSGGSPGLLRGLSLADGLALFGGFTFALTNVLLRRLQAVPAQARMLAMFSGCMAMGLASAFAGSSVGLVPPMPAPQAGWMLIAAGLAVLLMLGNWALQFGAARLPAGVTAVVMLAEVVFASASSVLIAGEVLTPRTLLGGACIIAAALLSALAHARRRGA</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="64" xmlns="http://uniprot.org/uniprot">
    <accession>A9BR11</accession>
    <name>A9BR11_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Glycosyl transferase group 1</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Daci_0320</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="4" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX32966.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012202259.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_0320"/>
    <dbReference type="CAZy" id="GT4">
        <property type="family name" value="Glycosyltransferase Family 4"/>
    </dbReference>
    <dbReference type="PRIDE" id="A9BR11"/>
    <dbReference type="EnsemblBacteria" id="ABX32966">
        <property type="protein sequence ID" value="ABX32966"/>
        <property type="gene ID" value="Daci_0320"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_0320"/>
    <dbReference type="eggNOG" id="COG0438">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_009583_0_3_4"/>
    <dbReference type="OMA" id="FARQKDH"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016757">
        <property type="term" value="F:glycosyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001296">
        <property type="entry name" value="Glyco_trans_1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR028098">
        <property type="entry name" value="Glyco_trans_4-like_N"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13439">
        <property type="entry name" value="Glyco_transf_4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00534">
        <property type="entry name" value="Glycos_transf_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Glyco_trans_4-like_N" evidence="2">
        <location>
            <begin position="22"/>
            <end position="176"/>
        </location>
    </feature>
    <feature type="domain" description="Glycos_transf_1" evidence="1">
        <location>
            <begin position="189"/>
            <end position="345"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF00534"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF13439"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ABX32966.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="373" mass="41051" checksum="C3B3538305F410D1" modified="2008-01-15" version="1">MTERATTARPRVLHFVTGGFSGATQVAVDLVSAHRASGRFDARLVLRRKRNTSDERVQKLRDGGIDVDVVAGWSHAATVWQLRRICLDFRPDIVVAHGFSDHLWGRFAALWAGVPCLVHVEHNSRERYTRWRLAQALWLTERTAAIVGCSEGVRQSLQDRGFPAAKLLAISNGIRPEPYLQEPPPLLQRRPDIVMAARFARQKDHATLLRALVVLRQRGLTPTLTLAGGGKARAQQAAQRLSAELGLQDQVQFIGMCNDVPGLLRAHRVCVLSTHYEGMPLSLLEGMAAGCVVVGSRVVGVQEVVRPGDNGLLAAHADPESLADALQQALQDDEAALRMAATARQEALSHYSLQRMTGQYEDLFARLLQGERP</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="66" xmlns="http://uniprot.org/uniprot">
    <accession>A9BR79</accession>
    <name>A9BR79_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">Arsenate reductase</fullName>
            <ecNumber evidence="3">1.20.4.1</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="4" type="ordered locus">Daci_0491</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="5" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="3">
            <text>[glutaredoxin]-dithiol + arsenate + glutathione + H(+) = arsenite + glutathionyl-S-S-[glutaredoxin] + H2O</text>
            <dbReference type="Rhea" id="RHEA:22016"/>
            <dbReference type="Rhea" id="RHEA-COMP:10729"/>
            <dbReference type="Rhea" id="RHEA-COMP:17668"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:29242"/>
            <dbReference type="ChEBI" id="CHEBI:29950"/>
            <dbReference type="ChEBI" id="CHEBI:48597"/>
            <dbReference type="ChEBI" id="CHEBI:57925"/>
            <dbReference type="ChEBI" id="CHEBI:146199"/>
            <dbReference type="EC" id="1.20.4.1"/>
        </reaction>
    </comment>
    <comment type="similarity">
        <text evidence="1 2 3">Belongs to the ArsC family.</text>
    </comment>
    <dbReference type="EC" id="1.20.4.1" evidence="3"/>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX33137.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012202423.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_0491"/>
    <dbReference type="PRIDE" id="A9BR79"/>
    <dbReference type="EnsemblBacteria" id="ABX33137">
        <property type="protein sequence ID" value="ABX33137"/>
        <property type="gene ID" value="Daci_0491"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_0491"/>
    <dbReference type="eggNOG" id="COG1393">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_116644_0_0_4"/>
    <dbReference type="OMA" id="HYLENPP"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008794">
        <property type="term" value="F:arsenate reductase (glutaredoxin) activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd03034">
        <property type="entry name" value="ArsC_ArsC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006659">
        <property type="entry name" value="Arsenate_reductase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006660">
        <property type="entry name" value="Arsenate_reductase-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036249">
        <property type="entry name" value="Thioredoxin-like_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30041">
        <property type="entry name" value="PTHR30041"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03960">
        <property type="entry name" value="ArsC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52833">
        <property type="entry name" value="SSF52833"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00014">
        <property type="entry name" value="arsC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51353">
        <property type="entry name" value="ARSC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00007198"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU01282"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="RuleBase" id="RU362029"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="ABX33137.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="140" mass="15529" checksum="28CC19954C7D7C78" modified="2008-01-15" version="1">MSSITIYHNPVCGTSRNVLALIRNSGEEPTVIEYLKTPPDRETLQRLITDMGVPVRAVLREKGTPYAELGLDDPKWSDAQLIDCMLQHPILINRPIVVTPLGTRLCRPSEAVLDILPQSQRGAFNKEDGEAVVDAEGRRV</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="56" xmlns="http://uniprot.org/uniprot">
    <accession>A9BRD4</accession>
    <name>A9BRD4_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ordered locus">Daci_0546</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="5" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Periplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the UPF0065 (bug) family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX33192.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012202478.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_0546"/>
    <dbReference type="PRIDE" id="A9BRD4"/>
    <dbReference type="EnsemblBacteria" id="ABX33192">
        <property type="protein sequence ID" value="ABX33192"/>
        <property type="gene ID" value="Daci_0546"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_0546"/>
    <dbReference type="eggNOG" id="COG3181">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_045683_0_1_4"/>
    <dbReference type="OMA" id="MAMEQAQ"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0042597">
        <property type="term" value="C:periplasmic space"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.190.150">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005064">
        <property type="entry name" value="BUG"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR042100">
        <property type="entry name" value="Bug_dom1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR42928">
        <property type="entry name" value="PTHR42928"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03401">
        <property type="entry name" value="TctC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF017082">
        <property type="entry name" value="YflP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="3">
        <location>
            <begin position="1"/>
            <end position="24"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5002735721" evidence="3">
        <location>
            <begin position="25"/>
            <end position="332"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004418"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00006987"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="ABX33192.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="332" mass="35407" checksum="F4C424175A5E095B" modified="2008-01-15" version="1">MSLNRRQLAAWMLGAPWLSPAARASTAGADAWPSQPLTVVVPFSPGGSVDVAARLVMPRLAERLRQPVVIENTVGASGTIATQRVIKARPDGHTALFGVASCVLIAPLVSPERFRYDGLRELLPVAPVASSAFVLAGRPDLPATTAAELVQLSRQQPGRLTVGTDGVGTSLHLTAEMLQQQAGLSWTHVPYKSGPQALTELAGGQIDLAVLPVALVQSFVREGKLRGLGVTSRLRAATLPQTPSLQETPVWQSFDVEAWQGLLLPARTDARIAERLARETAAVLAEPDLVRKLAEAGFKPMAMEQAQFIAHLERERKLLEATVHAARIHGAG</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="79" xmlns="http://uniprot.org/uniprot">
    <accession>A9BRF1</accession>
    <name>A9BRF1_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Transcriptional regulator, LysR family</fullName>
            <ecNumber evidence="3">4.2.1.1</ecNumber>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Daci_0666</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="4" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the LysR transcriptional regulatory family.</text>
    </comment>
    <dbReference type="EC" id="4.2.1.1" evidence="3"/>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX33312.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_0666"/>
    <dbReference type="PRIDE" id="A9BRF1"/>
    <dbReference type="EnsemblBacteria" id="ABX33312">
        <property type="protein sequence ID" value="ABX33312"/>
        <property type="gene ID" value="Daci_0666"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_0666"/>
    <dbReference type="eggNOG" id="COG0583">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_039613_16_4_4"/>
    <dbReference type="OMA" id="DITQTND"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004089">
        <property type="term" value="F:carbonate dehydratase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003700">
        <property type="term" value="F:DNA-binding transcription factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005119">
        <property type="entry name" value="LysR_subst-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000847">
        <property type="entry name" value="Tscrpt_reg_HTH_LysR"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036390">
        <property type="entry name" value="WH_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00126">
        <property type="entry name" value="HTH_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03466">
        <property type="entry name" value="LysR_substrate"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46785">
        <property type="entry name" value="SSF46785"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50931">
        <property type="entry name" value="HTH_LYSR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-0456">Lyase</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HTH lysR-type" evidence="2">
        <location>
            <begin position="15"/>
            <end position="72"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00009437"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS50931"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ABX33312.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="324" mass="35726" checksum="B0A2432D2215DB63" modified="2008-01-15" version="1">MPHKNTEKKRTAVMDKLKAFESFVSVATRGSLTAAAKAEGVAPAIMGRRLDALEEHLGVKLMVRTTRRISLTHEGSAFLEDCQRLLSDVSNAEASVSAGGVKATGHLRITAPAGFGRRHVAPLVPLFRDLHPDVTISLNLSDRVVDLAGEGFDCAVRVGDLPDSALVSVRIADNRRQCVATPAYLERRGTPRHPSELTQHDCLTLSSDASQTRGWAFRIPHPDSGTSEVVHFKPGGPLDCSDGQVLHDWCLGGWGIAWRSTWEVEAEITSGRLVAVLETFAAPPNGIFVVFPQRKHMPLRVRLWIDYLKHHYEQPDFWRRTHAA</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="59" xmlns="http://uniprot.org/uniprot">
    <accession>A9BRF5</accession>
    <name>A9BRF5_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Sporulation domain protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ordered locus">Daci_0670</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="5" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX33316.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012202602.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_0670"/>
    <dbReference type="PRIDE" id="A9BRF5"/>
    <dbReference type="EnsemblBacteria" id="ABX33316">
        <property type="protein sequence ID" value="ABX33316"/>
        <property type="gene ID" value="Daci_0670"/>
    </dbReference>
    <dbReference type="GeneID" id="60685223"/>
    <dbReference type="KEGG" id="dac:Daci_0670"/>
    <dbReference type="eggNOG" id="COG3087">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_076835_1_0_4"/>
    <dbReference type="OMA" id="PIPGWLW"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0042834">
        <property type="term" value="F:peptidoglycan binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.70.1070">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007730">
        <property type="entry name" value="SPOR-like_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036680">
        <property type="entry name" value="SPOR-like_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF05036">
        <property type="entry name" value="SPOR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF110997">
        <property type="entry name" value="SSF110997"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51724">
        <property type="entry name" value="SPOR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0472">Membrane</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="2" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="7"/>
            <end position="31"/>
        </location>
    </feature>
    <feature type="domain" description="SPOR" evidence="3">
        <location>
            <begin position="149"/>
            <end position="228"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="38"/>
            <end position="138"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Pro residues" evidence="1">
        <location>
            <begin position="66"/>
            <end position="113"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="PROSITE" id="PS51724"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="ABX33316.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="229" mass="23659" checksum="DB531122FD79EBD0" modified="2008-01-15" version="1">MKTQQRGGTVIGLIIGMIVGLAAALAVAVYVTKVPVPFLSKGGKTADQDAAEAQRNKNWDPNAPLQGKNPAPPPPAAVTPSLPGSTAPTAPTPPAVAGGVTPPPAPVDPAKPPAKPETKADGKSSADPLGDLVKSRSAAAEKAEKAEKADAAFNYFVQAGAFRSQGDADAQRAKLAMLGWEARVSEREQNGITIFRVRVGPFTKRDDAEQLKQKLDGAGVESTLVRAAR</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="40" xmlns="http://uniprot.org/uniprot">
    <accession>A9BRI5</accession>
    <name>A9BRI5_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">DUF4123 domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_0700</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX33346.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012202632.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_0700"/>
    <dbReference type="PRIDE" id="A9BRI5"/>
    <dbReference type="EnsemblBacteria" id="ABX33346">
        <property type="protein sequence ID" value="ABX33346"/>
        <property type="gene ID" value="Daci_0700"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_0700"/>
    <dbReference type="eggNOG" id="COG1716">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_1352784_0_0_4"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025391">
        <property type="entry name" value="DUF4123"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13503">
        <property type="entry name" value="DUF4123"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="DUF4123" evidence="1">
        <location>
            <begin position="34"/>
            <end position="153"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF13503"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX33346.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="202" mass="22793" checksum="3A0FC89E5B2556BC" modified="2008-01-15" version="1">MPKLNPPALCLPGALQMARRAVLQKTAATYDGLLYAVVDAAADEHLHDALLAEPPQSGITCLYDGMPAARYARYAPYLLRVHAGSPLFQRWPLEGWQAHWGIFLISRLPAPALKRHLKRFLQARGDGGQRLWLRFYDPRVLPRLLAQFDPAHLGDWFRGHSILACLAPHPEGIWVGMAQRKFLDHVTGLARLDNRQWEVPSQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="52" xmlns="http://uniprot.org/uniprot">
    <accession>A9BRK5</accession>
    <name>A9BRK5_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Putative site-specific recombinase transmembrane protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_0720</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX33366.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012202652.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_0720"/>
    <dbReference type="PRIDE" id="A9BRK5"/>
    <dbReference type="EnsemblBacteria" id="ABX33366">
        <property type="protein sequence ID" value="ABX33366"/>
        <property type="gene ID" value="Daci_0720"/>
    </dbReference>
    <dbReference type="GeneID" id="60685275"/>
    <dbReference type="KEGG" id="dac:Daci_0720"/>
    <dbReference type="eggNOG" id="COG4389">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_023672_0_0_4"/>
    <dbReference type="OMA" id="HYITRDR"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011385">
        <property type="entry name" value="Site-sp_rcmbase"/>
    </dbReference>
    <dbReference type="Pfam" id="PF10136">
        <property type="entry name" value="SpecificRecomb"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF015380">
        <property type="entry name" value="Site-sp_rcmb"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1 2" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="344"/>
            <end position="363"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="369"/>
            <end position="391"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="436"/>
            <end position="457"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="477"/>
            <end position="502"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="544"/>
            <end position="566"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="597"/>
            <end position="620"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX33366.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="655" mass="72472" checksum="2CD943AA3CA60D76" modified="2008-01-15" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="60" xmlns="http://uniprot.org/uniprot">
    <accession>A9BRL3</accession>
    <name>A9BRL3_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Transketolase domain protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_0728</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX33374.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012202660.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_0728"/>
    <dbReference type="PRIDE" id="A9BRL3"/>
    <dbReference type="EnsemblBacteria" id="ABX33374">
        <property type="protein sequence ID" value="ABX33374"/>
        <property type="gene ID" value="Daci_0728"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_0728"/>
    <dbReference type="eggNOG" id="COG3959">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_009227_4_1_4"/>
    <dbReference type="OMA" id="GQGYIAQ"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="CDD" id="cd02012">
        <property type="entry name" value="TPP_TK"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029061">
        <property type="entry name" value="THDP-binding"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005474">
        <property type="entry name" value="Transketolase_N"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00456">
        <property type="entry name" value="Transketolase_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52518">
        <property type="entry name" value="SSF52518"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="TRANSKETOLASE_1" evidence="1">
        <location>
            <begin position="22"/>
            <end position="259"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF00456"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX33374.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="286" mass="31224" checksum="160DDAD08C89749F" modified="2008-01-15" version="1">MNQELQQRLDRLAACAWRIRRRALQMGEVQGQGYIGQALGWADVLAVAYGDALRLRPDEPGWEGRDRFLLSHGHYAIAFYAALAEAGILSDEELQTYGSDDSRLPMSGMASYTPGMEISGGSLGQGLPIAVGMALALRHKGSDAFVYNSMSDGELDEGSTWEAALSAAHHGLGRLICLVDVNNQQADGPSTRMLGFEPLADKWAAFGWHVQRVDGNDLAQVVQAFDAARALAEDRPRVILCDTLMGKGVPFLEQREKNHFIRVDPPEWQQALAILDASQPLEPALP</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="77" xmlns="http://uniprot.org/uniprot">
    <accession>A9BS74</accession>
    <name>A9BS74_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="9">Protein translocase subunit SecD</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="9" type="primary">secD</name>
        <name evidence="11" type="ordered locus">Daci_0838</name>
    </gene>
    <organism evidence="11 12">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="11 12" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="12">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="12" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="12">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="9">Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA.</text>
    </comment>
    <comment type="subunit">
        <text evidence="9">Forms a complex with SecF. Part of the essential Sec protein translocation apparatus which comprises SecA, SecYEG and auxiliary proteins SecDF-YajC and YidC.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="9">Cell inner membrane</location>
            <topology evidence="9">Multi-pass membrane protein</topology>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="9">Belongs to the SecD/SecF family. SecD subfamily.</text>
    </comment>
    <comment type="caution">
        <text evidence="9">Lacks conserved residue(s) required for the propagation of feature annotation.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX33484.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012202770.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_0838"/>
    <dbReference type="PRIDE" id="A9BS74"/>
    <dbReference type="EnsemblBacteria" id="ABX33484">
        <property type="protein sequence ID" value="ABX33484"/>
        <property type="gene ID" value="Daci_0838"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_0838"/>
    <dbReference type="eggNOG" id="COG0342">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_007894_4_3_4"/>
    <dbReference type="OMA" id="MVVYYRL"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015450">
        <property type="term" value="F:protein-transporting ATPase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0065002">
        <property type="term" value="P:intracellular protein transmembrane transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006605">
        <property type="term" value="P:protein targeting"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043952">
        <property type="term" value="P:protein transport by the Sec complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01463_B">
        <property type="entry name" value="SecD_B"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005791">
        <property type="entry name" value="SecD"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027398">
        <property type="entry name" value="SecD-TM"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR022813">
        <property type="entry name" value="SecD/SecF_arch_bac"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR022645">
        <property type="entry name" value="SecD/SecF_bac"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR022646">
        <property type="entry name" value="SecD/SecF_CS"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30081">
        <property type="entry name" value="PTHR30081"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07549">
        <property type="entry name" value="Sec_GG"/>
        <property type="match status" value="1"/>
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    </dbReference>
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        <property type="match status" value="1"/>
    </dbReference>
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        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01129">
        <property type="entry name" value="secD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="9" id="KW-0997">Cell inner membrane</keyword>
    <keyword evidence="3 9" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="8 9" id="KW-0472">Membrane</keyword>
    <keyword evidence="5 9" id="KW-0653">Protein transport</keyword>
    <keyword evidence="12" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="7 9" id="KW-0811">Translocation</keyword>
    <keyword evidence="4 9" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="6 9" id="KW-1133">Transmembrane helix</keyword>
    <keyword evidence="2 9" id="KW-0813">Transport</keyword>
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        <location>
            <begin position="453"/>
            <end position="470"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="9">
        <location>
            <begin position="477"/>
            <end position="495"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="9">
        <location>
            <begin position="574"/>
            <end position="600"/>
        </location>
    </feature>
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        <location>
            <begin position="1"/>
            <end position="108"/>
        </location>
    </feature>
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        <source>
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        </source>
    </evidence>
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        <source>
            <dbReference type="ARBA" id="ARBA00022448"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022927"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023010"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01463"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="10">
        <source>
            <dbReference type="Pfam" id="PF13721"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="EMBL" id="ABX33484.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="640" mass="68714" checksum="57EA6D79CDC92125" modified="2008-01-15" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="65" xmlns="http://uniprot.org/uniprot">
    <accession>A9BS76</accession>
    <name>A9BS76_DELAS</name>
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        <submittedName>
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        </submittedName>
    </protein>
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    </gene>
    <organism evidence="5 6">
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        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
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            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
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    </organism>
    <reference evidence="5 6" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="6" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the pyruvate:ferredoxin/flavodoxin oxidoreductase family.</text>
    </comment>
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        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
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        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
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    <dbReference type="EnsemblBacteria" id="ABX33486">
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        <property type="gene ID" value="Daci_0840"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_0840"/>
    <dbReference type="eggNOG" id="COG1014">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="eggNOG" id="COG4231">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_009166_1_0_4"/>
    <dbReference type="OMA" id="WVGFKCQ"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016903">
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        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
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        <property type="term" value="F:thiamine pyrophosphate binding"/>
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        <property type="project" value="InterPro"/>
    </dbReference>
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    </dbReference>
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    </dbReference>
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    </dbReference>
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    </dbReference>
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    </dbReference>
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    </dbReference>
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    </dbReference>
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        <property type="match status" value="1"/>
    </dbReference>
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        <location>
            <begin position="480"/>
            <end position="630"/>
        </location>
    </feature>
    <feature type="domain" description="POR" evidence="3">
        <location>
            <begin position="756"/>
            <end position="943"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00009032"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023002"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF01558"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="Pfam" id="PF02775"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="ABX33486.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="1193" mass="130471" checksum="4BC82CA6250574A2" modified="2008-01-15" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="75" xmlns="http://uniprot.org/uniprot">
    <accession>A9BSE4</accession>
    <name>A9BSE4_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="5">PpiC-type peptidyl-prolyl cis-trans isomerase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ordered locus">Daci_1113</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
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        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
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                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="6" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
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        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_1113"/>
    <dbReference type="PRIDE" id="A9BSE4"/>
    <dbReference type="EnsemblBacteria" id="ABX33758">
        <property type="protein sequence ID" value="ABX33758"/>
        <property type="gene ID" value="Daci_1113"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_1113"/>
    <dbReference type="eggNOG" id="COG0760">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_034646_9_1_4"/>
    <dbReference type="OMA" id="HSRFGLH"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003755">
        <property type="term" value="F:peptidyl-prolyl cis-trans isomerase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
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        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR046357">
        <property type="entry name" value="PPIase_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000297">
        <property type="entry name" value="PPIase_PpiC"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023058">
        <property type="entry name" value="PPIase_PpiC_CS"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00639">
        <property type="entry name" value="Rotamase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01096">
        <property type="entry name" value="PPIC_PPIASE_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50198">
        <property type="entry name" value="PPIC_PPIASE_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1 2 5" id="KW-0413">Isomerase</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0697">Rotamase</keyword>
    <feature type="domain" description="PpiC" evidence="4">
        <location>
            <begin position="141"/>
            <end position="244"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="3">
        <location>
            <begin position="1"/>
            <end position="37"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="3">
        <location>
            <begin position="12"/>
            <end position="28"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023235"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00278"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="PROSITE" id="PS50198"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="ABX33758.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="300" mass="32073" checksum="B369DCE637F59DF8" modified="2008-01-15" version="1">MEHGCNGSGGGHCGCASSTPSSTSSAPMGDLPAIPEVPAFQPVGEAGAEVARINNTPLHAPGQRPPERELRQRACTELLRQAAQREGLLGADDAAGDDGVISERASQAIEQLLEQSLHLPEPGEDACRRHFDANPARFAQGERVRLRHVLFAVTPGVDVRALTQRAEALLIELRCADDAGLRFAEAARQWSNCPSGQHGGELGWLGRSDCAPEFARDVFASQEIGVLPRLVHSRFGLHVVEVCAREAGVLPDWQQARPAVAQALHQQTWVSALHQYLQLLAGQSEVVGVRIAAADSPLVQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="28" xmlns="http://uniprot.org/uniprot">
    <accession>A9BSS0</accession>
    <name>A9BSS0_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Daci_1431</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
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    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
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                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
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            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="2" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX34075.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="PRIDE" id="A9BSS0"/>
    <dbReference type="EnsemblBacteria" id="ABX34075">
        <property type="protein sequence ID" value="ABX34075"/>
        <property type="gene ID" value="Daci_1431"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_1431"/>
    <dbReference type="HOGENOM" id="CLU_1872038_0_0_4"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ABX34075.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="136" mass="15535" checksum="B0BF5644287D151A" modified="2008-01-15" version="1">MLGNLFEVLADRYKEHAYALPAKSYSKKNRNKTPEFDIFSPALVAHLYLSIENINIVRRGMISLYGQAYFIFPESREFCYLNVCDEYHMIAGQKEILMESLGADFFSTWKSAIAISGFGSSSEMDIIRAARSYGYI</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="60" xmlns="http://uniprot.org/uniprot">
    <accession>A9BSZ8</accession>
    <name>A9BSZ8_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="6">Efflux transporter, RND family, MFP subunit</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ordered locus">Daci_1715</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="7" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX34358.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012203643.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_1715"/>
    <dbReference type="PRIDE" id="A9BSZ8"/>
    <dbReference type="EnsemblBacteria" id="ABX34358">
        <property type="protein sequence ID" value="ABX34358"/>
        <property type="gene ID" value="Daci_1715"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_1715"/>
    <dbReference type="eggNOG" id="COG0803">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="eggNOG" id="COG0845">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_018816_13_0_4"/>
    <dbReference type="OMA" id="ANEQEHA"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0022857">
        <property type="term" value="F:transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR032317">
        <property type="entry name" value="HlyD_D23"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006143">
        <property type="entry name" value="RND_pump_MFP"/>
    </dbReference>
    <dbReference type="Pfam" id="PF16576">
        <property type="entry name" value="HlyD_D23"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01730">
        <property type="entry name" value="RND_mfp"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="4" id="KW-0472">Membrane</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="4" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="4">
        <location>
            <begin position="12"/>
            <end position="33"/>
        </location>
    </feature>
    <feature type="domain" description="HlyD_D23" evidence="5">
        <location>
            <begin position="139"/>
            <end position="370"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="3">
        <location>
            <begin position="36"/>
            <end position="112"/>
        </location>
    </feature>
    <feature type="coiled-coil region" evidence="2">
        <location>
            <begin position="222"/>
            <end position="249"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="3">
        <location>
            <begin position="36"/>
            <end position="51"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="3">
        <location>
            <begin position="56"/>
            <end position="96"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00009477"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="Pfam" id="PF16576"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="ABX34358.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="456" mass="48071" checksum="57635637173161A9" modified="2008-01-15" version="1">MKTNSSSSSSRTPTVIAIVSILSVGVLAATLILRSGNSNSPESSGKTPQSQEHGHGEAAGHADQEHHGEKAAKSHSDDKGHADGEHHEEGDGNKAKPEASAKPGAEAGHDEDEGLIPMDAQRIQVAGLKAAQAGPSVIRSVLQLPGEIRFNEDRTAHVVPRVAGVAESVPANLGQNVKKGQLLAVLSSVAVSEQRSELLGAQKRLALARTTYQREKQLWEEKVSAEQDYLQAQQVLREAEIAVSNAQQKLAATGAGAGAGAGLNRFELRAPFDGVIVEKHLSIGEAVQDTTQVFTISDLRSVWAEMRVSAPDLPSVRVGEKATVRATAFESAATGEVSYVGALIGQDTRTAPARITLPNPDGAWRPGLFVNVEVTASSQEAALTVVSTAIQRIENQKTVVFVPVQGGFRAQPVRIGRTDSKNTEILEGLKPGQAYVAEGSFLLKAELGKATAEHAH</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="50" xmlns="http://uniprot.org/uniprot">
    <accession>A9BT14</accession>
    <name>A9BT14_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">DUF190 domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Daci_1731</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="4" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the UPF0166 family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX34374.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012203659.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_1731"/>
    <dbReference type="PRIDE" id="A9BT14"/>
    <dbReference type="EnsemblBacteria" id="ABX34374">
        <property type="protein sequence ID" value="ABX34374"/>
        <property type="gene ID" value="Daci_1731"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_1731"/>
    <dbReference type="eggNOG" id="ENOG50331HY">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_154428_0_0_4"/>
    <dbReference type="OMA" id="MRHPQCL"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.70.120">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003793">
        <property type="entry name" value="DUF190"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011322">
        <property type="entry name" value="N-reg_PII-like_a/b"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015867">
        <property type="entry name" value="N-reg_PII/ATP_PRibTrfase_C"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02641">
        <property type="entry name" value="DUF190"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54913">
        <property type="entry name" value="SSF54913"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="DUF190" evidence="2">
        <location>
            <begin position="34"/>
            <end position="101"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00010554"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF02641"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ABX34374.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="137" mass="15303" checksum="61382537AE746C1A" modified="2008-01-15" version="1">MMSTKPATLAALRLYFPGASTAKATRFWHRLSAPALAHHLLVAAKNAHIRQAMLHRVSSGYLPGERLSHSHAEVLDMRHPQCLELLDSEQRLRAFMHEHAGELNKVHAVLLLAELPLGPFRFPGEARRGTKPPPDEQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="55" xmlns="http://uniprot.org/uniprot">
    <accession>A9BT45</accession>
    <name>A9BT45_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">4Fe-4S ferredoxin-type domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_1970</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX34610.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012203895.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_1970"/>
    <dbReference type="PRIDE" id="A9BT45"/>
    <dbReference type="EnsemblBacteria" id="ABX34610">
        <property type="protein sequence ID" value="ABX34610"/>
        <property type="gene ID" value="Daci_1970"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_1970"/>
    <dbReference type="eggNOG" id="ENOG5032SB1">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_142273_1_0_4"/>
    <dbReference type="OMA" id="CIALDMD"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="CDD" id="cd08026">
        <property type="entry name" value="DUF326"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017896">
        <property type="entry name" value="4Fe4S_Fe-S-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005560">
        <property type="entry name" value="DUF326"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR044543">
        <property type="entry name" value="YHJQ-like"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03860">
        <property type="entry name" value="DUF326"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51379">
        <property type="entry name" value="4FE4S_FER_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="4Fe-4S ferredoxin-type" evidence="1">
        <location>
            <begin position="4"/>
            <end position="34"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS51379"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX34610.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="116" mass="12283" checksum="8851330F2A56DA05" modified="2008-01-15" version="1">MNTTPPAIDYKACMDACQACVIACNTCASACLKESDVQMMAACIAQDLECAQICELAVAAMARQSPHAPDICRLCAQICQACADECSKHSHDHCQTCAAACQQCAMSCNLMGMQSH</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="74" xmlns="http://uniprot.org/uniprot">
    <accession>A9BTB5</accession>
    <name>A9BTB5_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="5">Phospho-2-dehydro-3-deoxyheptonate aldolase</fullName>
            <ecNumber evidence="5">2.5.1.54</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="7" type="ordered locus">Daci_2040</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="8" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="2 5">Stereospecific condensation of phosphoenolpyruvate (PEP) and D-erythrose-4-phosphate (E4P) giving rise to 3-deoxy-D-arabino-heptulosonate-7-phosphate (DAHP).</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1 5">
            <text>D-erythrose 4-phosphate + H2O + phosphoenolpyruvate = 7-phospho-2-dehydro-3-deoxy-D-arabino-heptonate + phosphate</text>
            <dbReference type="Rhea" id="RHEA:14717"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:16897"/>
            <dbReference type="ChEBI" id="CHEBI:43474"/>
            <dbReference type="ChEBI" id="CHEBI:58394"/>
            <dbReference type="ChEBI" id="CHEBI:58702"/>
            <dbReference type="EC" id="2.5.1.54"/>
        </reaction>
    </comment>
    <comment type="pathway">
        <text evidence="3 5">Metabolic intermediate biosynthesis; chorismate biosynthesis; chorismate from D-erythrose 4-phosphate and phosphoenolpyruvate: step 1/7.</text>
    </comment>
    <comment type="similarity">
        <text evidence="4 5">Belongs to the class-I DAHP synthase family.</text>
    </comment>
    <dbReference type="EC" id="2.5.1.54" evidence="5"/>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX34680.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012203965.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_2040"/>
    <dbReference type="PRIDE" id="A9BTB5"/>
    <dbReference type="EnsemblBacteria" id="ABX34680">
        <property type="protein sequence ID" value="ABX34680"/>
        <property type="gene ID" value="Daci_2040"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_2040"/>
    <dbReference type="eggNOG" id="COG0722">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_030903_0_1_4"/>
    <dbReference type="OMA" id="PCLSWED"/>
    <dbReference type="UniPathway" id="UPA00053">
        <property type="reaction ID" value="UER00084"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003849">
        <property type="term" value="F:3-deoxy-7-phosphoheptulonate synthase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009073">
        <property type="term" value="P:aromatic amino acid family biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008652">
        <property type="term" value="P:cellular amino acid biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009423">
        <property type="term" value="P:chorismate biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniPathway"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.20.20.70">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013785">
        <property type="entry name" value="Aldolase_TIM"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006218">
        <property type="entry name" value="DAHP1/KDSA"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006219">
        <property type="entry name" value="DHAP_synth_1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR21225">
        <property type="entry name" value="PTHR21225"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00793">
        <property type="entry name" value="DAHP_synth_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF001361">
        <property type="entry name" value="DAHP_synthase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00034">
        <property type="entry name" value="aroFGH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-0028">Amino-acid biosynthesis</keyword>
    <keyword evidence="5" id="KW-0057">Aromatic amino acid biosynthesis</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="5 7" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="DAHP_synth_1" evidence="6">
        <location>
            <begin position="61"/>
            <end position="354"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001370"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00003726"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00004688"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00007985"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="PIRNR" id="PIRNR001361"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="Pfam" id="PF00793"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="ABX34680.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="371" mass="39678" checksum="B9B8E8ABAE02B06F" modified="2008-01-15" version="1">MTTPTHVQRSAVPLSTHDTTRIDDLRIKAVRPLITPALLQEWLPAPEAAQQLVETSRAAISDVLQGRDDRLIVVVGPCSIHDHDQAMDYARQLKAQADALAGELLVVMRVYFEKPRTTVGWKGYINDPHLDGSFAINEGLEMARALLLDVLALGLPVGTEFLDLLSPQFISDLVSWGAIGARTTESQSHRQLASGLSCPVGFKNGTDGGVKVASDAIQAASAPHAFMGMTKMGQSAIFETRGNGDCHVILRGGKQPNYGAEHVQAACALLEGAGLRPQVMIDVSHANSSKQHRRQIDVAADVAQQIAGGDARITGLMVESHLQEGRQDIVDGQPLAHGVSVTDACISLEQTVPVLEQLAAAVKARRAKLRG</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="55" xmlns="http://uniprot.org/uniprot">
    <accession>A9BTH0</accession>
    <name>A9BTH0_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">VWFA domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_2300</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX34938.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012204221.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_2300"/>
    <dbReference type="PRIDE" id="A9BTH0"/>
    <dbReference type="EnsemblBacteria" id="ABX34938">
        <property type="protein sequence ID" value="ABX34938"/>
        <property type="gene ID" value="Daci_2300"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_2300"/>
    <dbReference type="eggNOG" id="COG2304">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_067782_0_0_4"/>
    <dbReference type="OMA" id="VRDYFHV"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.410">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002035">
        <property type="entry name" value="VWF_A"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036465">
        <property type="entry name" value="vWFA_dom_sf"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53300">
        <property type="entry name" value="SSF53300"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50234">
        <property type="entry name" value="VWFA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="VWFA" evidence="1">
        <location>
            <begin position="14"/>
            <end position="204"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS50234"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX34938.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="277" mass="29877" checksum="4039B787D7A16978" modified="2008-01-15" version="1">MSYQAQISRTSPTAFLFVVDQSGSMADKMSSGRSKAEFVADALNRTLVNLVTRCSKSEGVRDYFDVGVIGYSGTTVGNGFTGPLSGKILNAISEIERSPLRVEDRKRKMDDGAGGIIETSIKFPVWFEPSANGGTPMHAALTKAAEELVAWCDAHPESYPPTVLHVTDGESSDGDPEAIASHLGQIRTNDGEVVVLNIHVSALGAEPIRFPTSESGLPDSYARMLFRMSSLLPKHLVDFAKDKGHAVTSESRGFMFNAEAAEIVDFFDIGTRASQLR</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="60" xmlns="http://uniprot.org/uniprot">
    <accession>A9BTI8</accession>
    <name>A9BTI8_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Putative substrate-binding periplasmic (Pbp) ABC transporter protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Daci_2318</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="4" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX34956.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012204238.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_2318"/>
    <dbReference type="PRIDE" id="A9BTI8"/>
    <dbReference type="EnsemblBacteria" id="ABX34956">
        <property type="protein sequence ID" value="ABX34956"/>
        <property type="gene ID" value="Daci_2318"/>
    </dbReference>
    <dbReference type="GeneID" id="60686696"/>
    <dbReference type="KEGG" id="dac:Daci_2318"/>
    <dbReference type="eggNOG" id="COG0683">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_027128_1_0_4"/>
    <dbReference type="OMA" id="YSAVTQY"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR028081">
        <property type="entry name" value="Leu-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR028082">
        <property type="entry name" value="Peripla_BP_I"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13458">
        <property type="entry name" value="Peripla_BP_6"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53822">
        <property type="entry name" value="SSF53822"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="1">
        <location>
            <begin position="1"/>
            <end position="28"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5002732504" evidence="1">
        <location>
            <begin position="29"/>
            <end position="403"/>
        </location>
    </feature>
    <feature type="domain" description="Peripla_BP_6" evidence="2">
        <location>
            <begin position="32"/>
            <end position="367"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF13458"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ABX34956.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="403" mass="43912" checksum="970C4A1ADFB9DF1E" modified="2008-01-15" version="1">MQQRPKTSLMTPLALALCAAALATPALAQQDKVRIGFITDMSSLYADVEGKNGAVAIQMAIDDYGGKLLGKPIELLTADHQNKADIAASKAREWIDTQGISLVFGGTNSATALSMAKVAQEKKRVFIDNGAGSSALTNEQCSPYTVHYAFDTVALAKGTGAAVVEAGGKSWYFVTADYAFGHALEADTTKIIEARGGKVLGSVKTPLNASDFSSFMLQAQNSKAQILGLANAGGDTINSIKAAREFGVTKDMKLAGLLVFFTDVHSLGLKNTQGMQFTTSWYWDMNDASRKFADAFMAKTQRRPSEIQAADYSATMNWLKAVEKAGTLDADKVMATWRGMKMDDFFGSGYLREDGRYVHDMYLMEVKSPAESKGTWDYYKLVKKLPAEQVWTTKAESKCQYWR</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="49" xmlns="http://uniprot.org/uniprot">
    <accession>A9BTM4</accession>
    <name>A9BTM4_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_2354</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX34992.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012204274.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_2354"/>
    <dbReference type="PRIDE" id="A9BTM4"/>
    <dbReference type="EnsemblBacteria" id="ABX34992">
        <property type="protein sequence ID" value="ABX34992"/>
        <property type="gene ID" value="Daci_2354"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_2354"/>
    <dbReference type="eggNOG" id="ENOG502Z7X7">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_069127_0_0_4"/>
    <dbReference type="OMA" id="EQISCEF"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="22"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX34992.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="350" mass="39688" checksum="5A06BCBDB294E761" modified="2008-01-15" version="1">MHEAPRPALPPIGCNGSGVQRSSRHQPIGLQELPIREQFRLVSETGVFDCFDRLPLRHQLADHESAIAEFKLPVHTASWFYRLGEDEVLLAGNLRICREIGVRCHNIMTFKHHRDGHVLSDVEIAEHYLRVYDDAMGLGVEPSFALHVNTWTEDFLRVRSVAGRVQARGVPFHFTLDYSHVNFKIGNPAELDRSGVRRLLERGELALDPFEPGSLCEQWLDMGIVRWAQLRAAGPNQPLNLWHRNEDGSPGRGIQYPMLRPGPGEWHSPWHAYLLEPSKEAIRKVLACHHAQPHSPLRYLTTEFTNLPDYGLGAGYDLLEQNVAAARFMRQAWDEICTRPVLRASCEGAS</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2021-06-02" version="41" xmlns="http://uniprot.org/uniprot">
    <accession>A9BTQ2</accession>
    <name>A9BTQ2_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_2678</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX35316.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_011517524.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="ABX35316">
        <property type="protein sequence ID" value="ABX35316"/>
        <property type="gene ID" value="Daci_2678"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_2678"/>
    <dbReference type="eggNOG" id="COG1280">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_1692619_0_0_4"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="7"/>
            <end position="27"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="39"/>
            <end position="63"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX35316.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="155" mass="16180" checksum="4A9311D66B4625B7" modified="2008-01-15" version="1">MTPLDPLLLFVVANTVGPSTSSLYSLYLGATYGVRGALGYTLGTSLGFSIVVTTSSVLVAVAYEIPAGGQFGLKLFASGYTAWIASKCLRTAWTSSRDSTKALAFTKLGAYDGAIQQLANPRGWALATVSVVGFSDAQVPPLMEGSSQKTENKAR</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="66" xmlns="http://uniprot.org/uniprot">
    <accession>A9BTS0</accession>
    <name>A9BTS0_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="3">AAA ATPase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Daci_2696</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="4" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the TrbE/VirB4 family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX35334.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012204562.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_2696"/>
    <dbReference type="PRIDE" id="A9BTS0"/>
    <dbReference type="EnsemblBacteria" id="ABX35334">
        <property type="protein sequence ID" value="ABX35334"/>
        <property type="gene ID" value="Daci_2696"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_2696"/>
    <dbReference type="eggNOG" id="COG3451">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_008341_1_0_4"/>
    <dbReference type="OMA" id="LATMAMQ"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003593">
        <property type="entry name" value="AAA+_ATPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018145">
        <property type="entry name" value="CagE_TrbE_VirB_cntrl_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043964">
        <property type="entry name" value="P-loop_TraG"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03135">
        <property type="entry name" value="CagE_TrbE_VirB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF19044">
        <property type="entry name" value="P-loop_TraG"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00382">
        <property type="entry name" value="AAA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="AAA" evidence="2">
        <location>
            <begin position="440"/>
            <end position="704"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00006512"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="SMART" id="SM00382"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ABX35334.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="823" mass="90902" checksum="087A3610D70B23A5" modified="2008-01-15" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="51" xmlns="http://uniprot.org/uniprot">
    <accession>A9BTW6</accession>
    <name>A9BTW6_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">WYL domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_2742</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX35380.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012204593.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_2742"/>
    <dbReference type="PRIDE" id="A9BTW6"/>
    <dbReference type="EnsemblBacteria" id="ABX35380">
        <property type="protein sequence ID" value="ABX35380"/>
        <property type="gene ID" value="Daci_2742"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_2742"/>
    <dbReference type="eggNOG" id="COG2378">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_054168_2_0_4"/>
    <dbReference type="OMA" id="ELEYGMT"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR026881">
        <property type="entry name" value="WYL_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016634">
        <property type="entry name" value="WYL_dom_s026"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13280">
        <property type="entry name" value="WYL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF015558">
        <property type="entry name" value="Txn_reg_DeoR_prd"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="WYL" evidence="1">
        <location>
            <begin position="135"/>
            <end position="207"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF13280"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX35380.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="300" mass="34291" checksum="640656239561B39A" modified="2008-01-15" version="1">MQKPSFPAAEPAEPKGLSWGLESRLQFIDFRLRWERRINRMDLTEHFGISVPQASLDISKYMELAPSNLTYDRSSKTYTAAQSFHPLYQRSSAQRYLAELLATKMGIVEPTASFIGSAPETDWAPSPWRTINEQTVEAVVRAIRQQESILVSYQSMTSLDESVRLLSPHALGNDGFRWHMRAFCHKRQRFSDFVLARILRIDGFEATQVDSNQDSHWQTVLTLVLAPHPDLPAAKKRVLELDYGMEDGEVKLPCRQAFLYYTLRRLGLHTKEAPDPLAQQITLKNRDEIQPYIDALAAQA</sequence>
</entry>
<entry dataset="Swiss-Prot" created="2008-09-02" modified="2022-08-03" version="73" xmlns="http://uniprot.org/uniprot">
    <accession>A9BUC1</accession>
    <name>UREG_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Urease accessory protein UreG</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="1" type="primary">ureG</name>
        <name type="ordered locus">Daci_1179</name>
    </gene>
    <organism>
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference key="1">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain>DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="1">Facilitates the functional incorporation of the urease nickel metallocenter. This process requires GTP hydrolysis, probably effectuated by UreG.</text>
    </comment>
    <comment type="subunit">
        <text evidence="1">Homodimer. UreD, UreF and UreG form a complex that acts as a GTP-hydrolysis-dependent molecular chaperone, activating the urease apoprotein by helping to assemble the nickel containing metallocenter of UreC. The UreE protein probably delivers the nickel.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="1">Belongs to the SIMIBI class G3E GTPase family. UreG subfamily.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX33824.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012203110.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A9BUC1"/>
    <dbReference type="SMR" id="A9BUC1"/>
    <dbReference type="STRING" id="398578.Daci_1179"/>
    <dbReference type="PRIDE" id="A9BUC1"/>
    <dbReference type="EnsemblBacteria" id="ABX33824">
        <property type="protein sequence ID" value="ABX33824"/>
        <property type="gene ID" value="Daci_1179"/>
    </dbReference>
    <dbReference type="GeneID" id="60685747"/>
    <dbReference type="KEGG" id="dac:Daci_1179"/>
    <dbReference type="eggNOG" id="COG0378">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_072144_1_0_4"/>
    <dbReference type="OMA" id="VDLTIYV"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005525">
        <property type="term" value="F:GTP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003924">
        <property type="term" value="F:GTPase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016151">
        <property type="term" value="F:nickel cation binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006807">
        <property type="term" value="P:nitrogen compound metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01389">
        <property type="entry name" value="UreG"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003495">
        <property type="entry name" value="CobW/HypB/UreG_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004400">
        <property type="entry name" value="UreG"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR31715">
        <property type="entry name" value="PTHR31715"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02492">
        <property type="entry name" value="cobW"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00101">
        <property type="entry name" value="ureG"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword id="KW-0143">Chaperone</keyword>
    <keyword id="KW-0963">Cytoplasm</keyword>
    <keyword id="KW-0342">GTP-binding</keyword>
    <keyword id="KW-0996">Nickel insertion</keyword>
    <keyword id="KW-0547">Nucleotide-binding</keyword>
    <keyword id="KW-1185">Reference proteome</keyword>
    <feature type="chain" id="PRO_0000347387" description="Urease accessory protein UreG">
        <location>
            <begin position="1"/>
            <end position="213"/>
        </location>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <begin position="17"/>
            <end position="24"/>
        </location>
        <ligand>
            <name>GTP</name>
            <dbReference type="ChEBI" id="CHEBI:37565"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000255" key="1">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01389"/>
        </source>
    </evidence>
    <sequence length="213" mass="23043" checksum="6D832BFA87F2F4AE" modified="2008-01-15" version="1">MNTRTKKLPPLRVGIGGPVGSGKTTLLEMLCKAMRAHYDLVVITNDIYTKEDQRLLTVAEALPPERIMGVETGGCPHTAIREDASINLEAVDRMLRQFPEADIVFIESGGDNLAATFSPELSDLTIYVIDVAGGEKIPRKGGPGITKSDLLVVNKTDLAPYVGANLSIMEADTQRMRAHKPYVMGSVKSGKGLREVIDFITERGLLPPMPAQG</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="57" xmlns="http://uniprot.org/uniprot">
    <accession>A9BUT4</accession>
    <name>A9BUT4_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ordered locus">Daci_1548</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="5" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Periplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the UPF0065 (bug) family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX34192.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012203478.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_1548"/>
    <dbReference type="PRIDE" id="A9BUT4"/>
    <dbReference type="EnsemblBacteria" id="ABX34192">
        <property type="protein sequence ID" value="ABX34192"/>
        <property type="gene ID" value="Daci_1548"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_1548"/>
    <dbReference type="eggNOG" id="COG3181">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_045683_0_0_4"/>
    <dbReference type="OMA" id="WFDPGPG"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0042597">
        <property type="term" value="C:periplasmic space"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.190.150">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005064">
        <property type="entry name" value="BUG"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR042100">
        <property type="entry name" value="Bug_dom1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR42928">
        <property type="entry name" value="PTHR42928"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03401">
        <property type="entry name" value="TctC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF017082">
        <property type="entry name" value="YflP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="3">
        <location>
            <begin position="1"/>
            <end position="29"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5002735110" evidence="3">
        <location>
            <begin position="30"/>
            <end position="332"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004418"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00006987"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="ABX34192.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="332" mass="34905" checksum="0FD3E5557687DA8A" modified="2008-01-15" version="1">MHKTTPFSRWRRLGLLALLGATASVPALAQKAGDKWPERPVRLVVNFAPGGAADVLARAITPTMSQVLGQSVVVDNKPGAGGNIGISETVRAPKDGYTLLLSSGGAITINPMIYSKLAFNPEKDLTPVAAVARVHVFLETNPAVPATNVADFIKHLKANPGKLSYGSPGQGSSPHLAGEMFKRMAGVDAVHAPYKGAGPALSDVLSGQLQFWFDPGPGLKQVEAGKLRLLAIGSPHRSPQYPNVPTLAESGLPGFDADTLFGIYAPTGTPESVIEAVRTAVAKALEQKNVNDVILTLGATPAPLSRKAFIDHHATERERFGELVKAIGLKVD</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="70" xmlns="http://uniprot.org/uniprot">
    <accession>A9BUV8</accession>
    <name>A9BUV8_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="7">Acyl-CoA dehydrogenase type 2 domain</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ordered locus">Daci_1778</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="8" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX34420.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012203705.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_1778"/>
    <dbReference type="EnsemblBacteria" id="ABX34420">
        <property type="protein sequence ID" value="ABX34420"/>
        <property type="gene ID" value="Daci_1778"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_1778"/>
    <dbReference type="eggNOG" id="COG1960">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_018204_10_0_4"/>
    <dbReference type="OMA" id="KYHAVGN"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0050660">
        <property type="term" value="F:flavin adenine dinucleotide binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004497">
        <property type="term" value="F:monooxygenase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016627">
        <property type="term" value="F:oxidoreductase activity, acting on the CH-CH group of donors"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.540.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.110.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013107">
        <property type="entry name" value="Acyl-CoA_DH_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006091">
        <property type="entry name" value="Acyl-CoA_Oxase/DH_mid-dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR046373">
        <property type="entry name" value="Acyl-CoA_Oxase/DH_mid-dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036250">
        <property type="entry name" value="AcylCo_DH-like_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013786">
        <property type="entry name" value="AcylCoA_DH/ox_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037069">
        <property type="entry name" value="AcylCoA_DH/ox_N_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009100">
        <property type="entry name" value="AcylCoA_DH/oxidase_NM_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023922">
        <property type="entry name" value="S04_starv_induced_SfnB"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08028">
        <property type="entry name" value="Acyl-CoA_dh_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02770">
        <property type="entry name" value="Acyl-CoA_dh_M"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02771">
        <property type="entry name" value="Acyl-CoA_dh_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47203">
        <property type="entry name" value="SSF47203"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56645">
        <property type="entry name" value="SSF56645"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR04022">
        <property type="entry name" value="sulfur_SfnB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0285">Flavoprotein</keyword>
    <keyword evidence="2" id="KW-0503">Monooxygenase</keyword>
    <keyword evidence="2" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Acyl-CoA_dh_N" evidence="5">
        <location>
            <begin position="38"/>
            <end position="143"/>
        </location>
    </feature>
    <feature type="domain" description="Acyl-CoA_dh_M" evidence="4">
        <location>
            <begin position="161"/>
            <end position="241"/>
        </location>
    </feature>
    <feature type="domain" description="Acyl-CoA_dh_2" evidence="6">
        <location>
            <begin position="267"/>
            <end position="400"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="3">
        <location>
            <begin position="1"/>
            <end position="29"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="3">
        <location>
            <begin position="1"/>
            <end position="17"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022630"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023033"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="Pfam" id="PF02770"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="Pfam" id="PF02771"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="Pfam" id="PF08028"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="ABX34420.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="425" mass="45605" checksum="0994CC378307B619" modified="2008-01-15" version="1">MTQTSTQELQALASTPGSQPAPAAPPARPAHIIGSEAEALEAARSFAALIAPGALARDRDRLLPWQEVEQFSQSGLWGITIPREYGGAGVSTATLTRAIALIAAADGNFGHIPQNHYYSLEVLRVGGSPAQKAFFYDRVLRGERLGNALAEIGHRDFQRRTRLLRDSGGWFVQGRKFYCTGALFAHWIPTLVSAQEEAPGQGERMYLVFIPRDAAGVTVTDDWDGFGQRVTGSGSVQFDRVRVEPEWVVPFTSSFERPTTIGPFAQIIHAALDAGIGHGALQAALPFIREHARPWVDAGVASATQDPLLLQQLGNVHVRLRAADALVARAALAVDAAQRTPTDDSVAAASVAVAQAKALSTSASLLAGSKLFELAGTASTLAGQGLDRFWRNARTHTLHDPVRWKYHAVGNYVLNGIRPPRHGAL</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="63" xmlns="http://uniprot.org/uniprot">
    <accession>A9BUY1</accession>
    <name>A9BUY1_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Peptidase M16 domain protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ordered locus">Daci_1801</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="5" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the peptidase M16 family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX34443.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012203728.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_1801"/>
    <dbReference type="PRIDE" id="A9BUY1"/>
    <dbReference type="EnsemblBacteria" id="ABX34443">
        <property type="protein sequence ID" value="ABX34443"/>
        <property type="gene ID" value="Daci_1801"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_1801"/>
    <dbReference type="eggNOG" id="COG0612">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_009902_6_0_4"/>
    <dbReference type="OMA" id="WAFPAPE"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011249">
        <property type="entry name" value="Metalloenz_LuxS/M16"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011765">
        <property type="entry name" value="Pept_M16_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007863">
        <property type="entry name" value="Peptidase_M16_C"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00675">
        <property type="entry name" value="Peptidase_M16"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF05193">
        <property type="entry name" value="Peptidase_M16_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF63411">
        <property type="entry name" value="SSF63411"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Peptidase_M16" evidence="2">
        <location>
            <begin position="42"/>
            <end position="189"/>
        </location>
    </feature>
    <feature type="domain" description="Peptidase_M16_C" evidence="3">
        <location>
            <begin position="201"/>
            <end position="385"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00007261"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF00675"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF05193"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="ABX34443.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="453" mass="48346" checksum="303EEE62F5846F54" modified="2008-01-15" version="1">MKNMKKMVASTVLAGVGLGFGATSAWALLPIQHWTQPSGAQVWLVDSPGIPMVDVQMDFDAGSRRDPASQVGLASAVALMASKGVTAQGDAPALDENGLGQAWADLGASFGAQAGRDSFSYGLRSLTEPALLQRAVALAARQIATPSWPQDVWLRERERWTAAIKESDTRPGTVAGKALSQGVFGTHPYGARATGESLAHIDLSDMQSFHRRLIAACRAKVSIVGAVSREQADQLVQQLLAPLQAAQGQDASACAPLPDVPKVQALKAPVNENIPFASAQAQVLIAQPGIARNSPDFMAVLVGNHILGGGGFTSRLTEEVREKRGLSYSVYSDFSPGLDAGAFTIALQTRPDQAAEALKVSQDTLRRFVAEGPTEKELKAAKDNLIGGFALRIDSNRKLLGNVSNIAWNGLPLDYLEHWTERVQALTVRDVREAMQRMLQPERMVTVVVGGKQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="62" xmlns="http://uniprot.org/uniprot">
    <accession>A9BUY2</accession>
    <name>A9BUY2_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Methyltransferase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Daci_1802</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="4" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX34444.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012203729.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_1802"/>
    <dbReference type="PRIDE" id="A9BUY2"/>
    <dbReference type="EnsemblBacteria" id="ABX34444">
        <property type="protein sequence ID" value="ABX34444"/>
        <property type="gene ID" value="Daci_1802"/>
    </dbReference>
    <dbReference type="GeneID" id="60686228"/>
    <dbReference type="KEGG" id="dac:Daci_1802"/>
    <dbReference type="eggNOG" id="COG0742">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_075826_2_0_4"/>
    <dbReference type="OMA" id="FNWLMPY"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008168">
        <property type="term" value="F:methyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0031167">
        <property type="term" value="P:rRNA methylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.150">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004398">
        <property type="entry name" value="RNA_MeTrfase_RsmD"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029063">
        <property type="entry name" value="SAM-dependent_MTases_sf"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53335">
        <property type="entry name" value="SSF53335"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00095">
        <property type="entry name" value="TIGR00095"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1 3" id="KW-0489">Methyltransferase</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 3" id="KW-0808">Transferase</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022603"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ABX34444.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="236" mass="25286" checksum="40B0238259C34DC2" modified="2008-01-15" version="1">MSRNSIKIHTPAGKRWLEKATAEAAAPKAAAAAPAAAKAKAGRPAPVGAGEVRIIGGQWRRTRLPVAQHPGLRPTPDRVRETLFNWLGQDLTGWHCLDAFAGTGALGFEAASRGATNVLMNEQDATLVQQLQRLRERLDAQSVRVLRGDGIGCLRQVAPGTLDLVLIDPPFDHADLFEPALKAAAQAVSATGYVYLEAPQAWTEEQLAEAGGLQLFRHLKAGAVHAHLLRKAPQDE</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="56" xmlns="http://uniprot.org/uniprot">
    <accession>A9BV09</accession>
    <name>A9BV09_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="1">5-carboxymethyl-2-hydroxymuconate isomerase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Daci_1831</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="2" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX34471.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012203756.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_1831"/>
    <dbReference type="PRIDE" id="A9BV09"/>
    <dbReference type="EnsemblBacteria" id="ABX34471">
        <property type="protein sequence ID" value="ABX34471"/>
        <property type="gene ID" value="Daci_1831"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_1831"/>
    <dbReference type="eggNOG" id="COG3232">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_139188_3_0_4"/>
    <dbReference type="OMA" id="ENTRLNC"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008704">
        <property type="term" value="F:5-carboxymethyl-2-hydroxymuconate delta-isomerase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0019439">
        <property type="term" value="P:aromatic compound catabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd00580">
        <property type="entry name" value="CHMI"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.429.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004220">
        <property type="entry name" value="5-COMe_2-OHmuconate_Isoase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014347">
        <property type="entry name" value="Tautomerase/MIF_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37950">
        <property type="entry name" value="PTHR37950"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02962">
        <property type="entry name" value="CHMI"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55331">
        <property type="entry name" value="SSF55331"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0413">Isomerase</keyword>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ABX34471.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="119" mass="13031" checksum="49766078FACF928A" modified="2008-01-15" version="1">MPHLYVEYTDNLAGLPGQQLLTELNAFVCGHPSILDEADVKARLLPVSQFEIGSAPANRGFVHVQLRLLAGRTDTAKKELSEGIAAVLRRLTPQPAGMMVQLSVEIADMDKPSYYKGRL</sequence>
</entry>
<entry dataset="Swiss-Prot" created="2009-07-28" modified="2022-08-03" version="82" xmlns="http://uniprot.org/uniprot">
    <accession>A9BV10</accession>
    <name>BIOF_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">8-amino-7-oxononanoate synthase</fullName>
            <shortName evidence="1">AONS</shortName>
            <ecNumber evidence="1">2.3.1.47</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="1">7-keto-8-amino-pelargonic acid synthase</fullName>
            <shortName evidence="1">7-KAP synthase</shortName>
            <shortName evidence="1">KAPA synthase</shortName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="1">8-amino-7-ketopelargonate synthase</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="1" type="primary">bioF</name>
        <name type="ordered locus">Daci_1832</name>
    </gene>
    <organism>
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference key="1">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain>DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="1">Catalyzes the decarboxylative condensation of pimeloyl-[acyl-carrier protein] and L-alanine to produce 8-amino-7-oxononanoate (AON), [acyl-carrier protein], and carbon dioxide.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>6-carboxyhexanoyl-[ACP] + H(+) + L-alanine = (8S)-8-amino-7-oxononanoate + CO2 + holo-[ACP]</text>
            <dbReference type="Rhea" id="RHEA:42288"/>
            <dbReference type="Rhea" id="RHEA-COMP:9685"/>
            <dbReference type="Rhea" id="RHEA-COMP:9955"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:16526"/>
            <dbReference type="ChEBI" id="CHEBI:57972"/>
            <dbReference type="ChEBI" id="CHEBI:64479"/>
            <dbReference type="ChEBI" id="CHEBI:78846"/>
            <dbReference type="ChEBI" id="CHEBI:149468"/>
            <dbReference type="EC" id="2.3.1.47"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>pyridoxal 5'-phosphate</name>
            <dbReference type="ChEBI" id="CHEBI:597326"/>
        </cofactor>
    </comment>
    <comment type="pathway">
        <text evidence="1">Cofactor biosynthesis; biotin biosynthesis.</text>
    </comment>
    <comment type="subunit">
        <text evidence="1">Homodimer.</text>
    </comment>
    <comment type="similarity">
        <text evidence="1">Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family. BioF subfamily.</text>
    </comment>
    <dbReference type="EC" id="2.3.1.47" evidence="1"/>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX34472.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012203757.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A9BV10"/>
    <dbReference type="SMR" id="A9BV10"/>
    <dbReference type="STRING" id="398578.Daci_1832"/>
    <dbReference type="PRIDE" id="A9BV10"/>
    <dbReference type="EnsemblBacteria" id="ABX34472">
        <property type="protein sequence ID" value="ABX34472"/>
        <property type="gene ID" value="Daci_1832"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_1832"/>
    <dbReference type="eggNOG" id="COG0156">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_015846_11_2_4"/>
    <dbReference type="OMA" id="HYHASGI"/>
    <dbReference type="UniPathway" id="UPA00078"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008710">
        <property type="term" value="F:8-amino-7-oxononanoate synthase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030170">
        <property type="term" value="F:pyridoxal phosphate binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009102">
        <property type="term" value="P:biotin biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.640.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.1150.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01693">
        <property type="entry name" value="BioF_aminotrans_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004839">
        <property type="entry name" value="Aminotransferase_I/II"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004723">
        <property type="entry name" value="AONS_Archaea/Proteobacteria"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR022834">
        <property type="entry name" value="AONS_Proteobacteria"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015424">
        <property type="entry name" value="PyrdxlP-dep_Trfase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015421">
        <property type="entry name" value="PyrdxlP-dep_Trfase_major"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015422">
        <property type="entry name" value="PyrdxlP-dep_Trfase_small"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00155">
        <property type="entry name" value="Aminotran_1_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53383">
        <property type="entry name" value="SSF53383"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00858">
        <property type="entry name" value="bioF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword id="KW-0093">Biotin biosynthesis</keyword>
    <keyword id="KW-0663">Pyridoxal phosphate</keyword>
    <keyword id="KW-1185">Reference proteome</keyword>
    <keyword id="KW-0808">Transferase</keyword>
    <feature type="chain" id="PRO_0000380963" description="8-amino-7-oxononanoate synthase">
        <location>
            <begin position="1"/>
            <end position="405"/>
        </location>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <position position="23"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <begin position="114"/>
            <end position="115"/>
        </location>
        <ligand>
            <name>pyridoxal 5'-phosphate</name>
            <dbReference type="ChEBI" id="CHEBI:597326"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <position position="139"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <position position="185"/>
        </location>
        <ligand>
            <name>pyridoxal 5'-phosphate</name>
            <dbReference type="ChEBI" id="CHEBI:597326"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <position position="213"/>
        </location>
        <ligand>
            <name>pyridoxal 5'-phosphate</name>
            <dbReference type="ChEBI" id="CHEBI:597326"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <position position="245"/>
        </location>
        <ligand>
            <name>pyridoxal 5'-phosphate</name>
            <dbReference type="ChEBI" id="CHEBI:597326"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <position position="366"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="modified residue" description="N6-(pyridoxal phosphate)lysine" evidence="1">
        <location>
            <position position="248"/>
        </location>
    </feature>
    <evidence type="ECO:0000255" key="1">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01693"/>
        </source>
    </evidence>
    <sequence length="405" mass="42265" checksum="74C61066D8C6B5B4" modified="2008-01-15" version="1">MSGSWLDEIPARIAELDAAHLRRRRRATAPLQGAASGAHMEVDGHPMLAFCSNDYLGLAGHPTLVRAACAGAQAFGVGSGGSPLVSGHSTANAALEEQLAHFVQLPRALYFYAGYATNAGIVPALVGAGDALFSDALNHACLIDGARLSRAHVHRYAHADLGDLAAQLAASTARRKLVISDAVFSMDGNVADIRGLLALCDQYDALLLLDDAHGFGVLGPQGRGSLAEAGLTGANASPRVLYMATLGKAAGVAGAFVAGSDMLVEWLLQKTRSYIFATAAPPMLASALQASVALIEAEDERREALAERIAELRAGLTPLLARTGWQLLPSRTAVQALVIGSNATALAVMEGLRERGLWVPAIRPPTVPEGTARLRIALSASHTRIDVQLLLTALDEVSRLAPPLP</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="78" xmlns="http://uniprot.org/uniprot">
    <accession>A9BV15</accession>
    <name>A9BV15_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="5">7-carboxy-7-deazaguanine synthase</fullName>
            <shortName evidence="5">CDG synthase</shortName>
            <ecNumber evidence="5">4.3.99.3</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="5">Queuosine biosynthesis protein QueE</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="5" type="primary">queE</name>
        <name evidence="6" type="ordered locus">Daci_1837</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="7" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="5">Catalyzes the complex heterocyclic radical-mediated conversion of 6-carboxy-5,6,7,8-tetrahydropterin (CPH4) to 7-carboxy-7-deazaguanine (CDG), a step common to the biosynthetic pathways of all 7-deazapurine-containing compounds.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="5">
            <text>6-carboxy-5,6,7,8-tetrahydropterin + H(+) = 7-carboxy-7-deazaguanine + NH4(+)</text>
            <dbReference type="Rhea" id="RHEA:27974"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:28938"/>
            <dbReference type="ChEBI" id="CHEBI:61032"/>
            <dbReference type="ChEBI" id="CHEBI:61036"/>
            <dbReference type="EC" id="4.3.99.3"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="5">
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </cofactor>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="5">
            <name>S-adenosyl-L-methionine</name>
            <dbReference type="ChEBI" id="CHEBI:59789"/>
        </cofactor>
        <text evidence="5">Binds 1 S-adenosyl-L-methionine per subunit.</text>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="5">
            <name>[4Fe-4S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:49883"/>
        </cofactor>
        <text evidence="5">Binds 1 [4Fe-4S] cluster. The cluster is coordinated with 3 cysteines and an exchangeable S-adenosyl-L-methionine.</text>
    </comment>
    <comment type="pathway">
        <text evidence="5">Purine metabolism; 7-cyano-7-deazaguanine biosynthesis.</text>
    </comment>
    <comment type="subunit">
        <text evidence="5">Homodimer.</text>
    </comment>
    <comment type="similarity">
        <text evidence="5">Belongs to the radical SAM superfamily. 7-carboxy-7-deazaguanine synthase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="5">Lacks conserved residue(s) required for the propagation of feature annotation.</text>
    </comment>
    <dbReference type="EC" id="4.3.99.3" evidence="5"/>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX34477.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012203762.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_1837"/>
    <dbReference type="PRIDE" id="A9BV15"/>
    <dbReference type="EnsemblBacteria" id="ABX34477">
        <property type="protein sequence ID" value="ABX34477"/>
        <property type="gene ID" value="Daci_1837"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_1837"/>
    <dbReference type="eggNOG" id="COG0602">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_066739_0_1_4"/>
    <dbReference type="OMA" id="CDVKESW"/>
    <dbReference type="UniPathway" id="UPA00391"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051539">
        <property type="term" value="F:4 iron, 4 sulfur cluster binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016840">
        <property type="term" value="F:carbon-nitrogen lyase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000287">
        <property type="term" value="F:magnesium ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:1904047">
        <property type="term" value="F:S-adenosyl-L-methionine binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008616">
        <property type="term" value="P:queuosine biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.20.20.70">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00917">
        <property type="entry name" value="QueE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR024924">
        <property type="entry name" value="7-CO-7-deazaguanine_synth-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013785">
        <property type="entry name" value="Aldolase_TIM"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR030977">
        <property type="entry name" value="QueE_Cx14CxxC"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007197">
        <property type="entry name" value="rSAM"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF000370">
        <property type="entry name" value="QueE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SFLD" id="SFLDF00376">
        <property type="entry name" value="7-carboxy-7-deazaguanine_synth"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SFLD" id="SFLDS00029">
        <property type="entry name" value="Radical_SAM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR04508">
        <property type="entry name" value="queE_Cx14CxxC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-0004">4Fe-4S</keyword>
    <keyword evidence="3 5" id="KW-0408">Iron</keyword>
    <keyword evidence="4 5" id="KW-0411">Iron-sulfur</keyword>
    <keyword evidence="5" id="KW-0456">Lyase</keyword>
    <keyword evidence="5" id="KW-0460">Magnesium</keyword>
    <keyword evidence="2 5" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="5" id="KW-0671">Queuosine biosynthesis</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1 5" id="KW-0949">S-adenosyl-L-methionine</keyword>
    <feature type="region of interest" description="Substrate binding" evidence="5">
        <location>
            <begin position="12"/>
            <end position="14"/>
        </location>
    </feature>
    <feature type="region of interest" description="S-adenosyl-L-methionine binding" evidence="5">
        <location>
            <begin position="48"/>
            <end position="50"/>
        </location>
    </feature>
    <feature type="region of interest" description="S-adenosyl-L-methionine binding" evidence="5">
        <location>
            <begin position="134"/>
            <end position="136"/>
        </location>
    </feature>
    <feature type="region of interest" description="S-adenosyl-L-methionine binding" evidence="5">
        <location>
            <begin position="175"/>
            <end position="178"/>
        </location>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <position position="27"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <position position="31"/>
        </location>
        <ligand>
            <name>[4Fe-4S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:49883"/>
            <note>4Fe-4S-S-AdoMet</note>
        </ligand>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <position position="46"/>
        </location>
        <ligand>
            <name>[4Fe-4S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:49883"/>
            <note>4Fe-4S-S-AdoMet</note>
        </ligand>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <position position="49"/>
        </location>
        <ligand>
            <name>[4Fe-4S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:49883"/>
            <note>4Fe-4S-S-AdoMet</note>
        </ligand>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <position position="51"/>
        </location>
        <ligand>
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <position position="91"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <position position="93"/>
        </location>
        <ligand>
            <name>S-adenosyl-L-methionine</name>
            <dbReference type="ChEBI" id="CHEBI:59789"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022691"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023004"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023014"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00917"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="ABX34477.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="212" mass="23206" checksum="FD8E08C6DCFE5D4C" modified="2008-01-15" version="1">MTYSVKEIFYTLQGEGGQAGTPAIFCRFTGCNLWTGREQDRASAICQFCDTDFVGTDGTLGGKFATADALAERILSQWPAGDSQHRMVVLTGGEPLLQVDEPLIAALHARGFRISVESNGTVAAPEGIDWLCISPKAGAEWVQRSGQELKLVWPQPGFDLQAIEAGTRFDRYFLQPMDNVLQADNTAACIAQCLQRPAWRLSLQTHKLTGIR</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-01-19" version="46" xmlns="http://uniprot.org/uniprot">
    <accession>A9BVL8</accession>
    <name>A9BVL8_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">DUF2157 domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Daci_2447</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="4" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX35085.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_2447"/>
    <dbReference type="EnsemblBacteria" id="ABX35085">
        <property type="protein sequence ID" value="ABX35085"/>
        <property type="gene ID" value="Daci_2447"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_2447"/>
    <dbReference type="eggNOG" id="COG4984">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_050363_1_0_4"/>
    <dbReference type="OMA" id="FFAFNWQ"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018677">
        <property type="entry name" value="DUF2157"/>
    </dbReference>
    <dbReference type="Pfam" id="PF09925">
        <property type="entry name" value="DUF2157"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="69"/>
            <end position="91"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="103"/>
            <end position="121"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="128"/>
            <end position="145"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="151"/>
            <end position="168"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="175"/>
            <end position="193"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="205"/>
            <end position="223"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="235"/>
            <end position="257"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="263"/>
            <end position="281"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="288"/>
            <end position="309"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="321"/>
            <end position="340"/>
        </location>
    </feature>
    <feature type="domain" description="DUF2157" evidence="2">
        <location>
            <begin position="37"/>
            <end position="175"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF09925"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ABX35085.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="351" mass="37075" checksum="D61745B28A859F9C" modified="2008-01-15" version="1">MPSCAAIHAREVLAQSGIRIFKPRNVRTMNLRPLLHDLVRQHGLDRKAAVQLFALAGFEQEPAALRTRLWPVVALLGAALGGLGIVLWIAANWESMGRMQRFALLQGFVLVMCLGAAWRAAARVPLSVLALLGTGALFAFFGQTYQTGADPWQLFALWAALTLPLALAARSDGVWVPWVVVAMTGIALWAQAHTPQFWEVESRDLGVHAVALGAALAVTAVMAPALRRFTGAGLWALRGAGALALAMITSTAISGLFHSTVAPQYPLGLVLLAGAAALAGLRRHFDIFLLSGAALGLNVLLVCGLVYLLLEKLGADFTGMLLLVGLGAACLLAATVSLVLRMSRNAEGGLQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="84" xmlns="http://uniprot.org/uniprot">
    <accession>A9BVM8</accession>
    <name>A9BVM8_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Transcriptional regulator, LysR family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Daci_2457</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="4" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the LysR transcriptional regulatory family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX35095.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012204376.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_2457"/>
    <dbReference type="PRIDE" id="A9BVM8"/>
    <dbReference type="EnsemblBacteria" id="ABX35095">
        <property type="protein sequence ID" value="ABX35095"/>
        <property type="gene ID" value="Daci_2457"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_2457"/>
    <dbReference type="eggNOG" id="COG0583">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_039613_6_0_4"/>
    <dbReference type="OMA" id="HVRLLCN"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003700">
        <property type="term" value="F:DNA-binding transcription factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005119">
        <property type="entry name" value="LysR_subst-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000847">
        <property type="entry name" value="Tscrpt_reg_HTH_LysR"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036390">
        <property type="entry name" value="WH_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00126">
        <property type="entry name" value="HTH_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03466">
        <property type="entry name" value="LysR_substrate"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46785">
        <property type="entry name" value="SSF46785"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50931">
        <property type="entry name" value="HTH_LYSR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HTH lysR-type" evidence="2">
        <location>
            <begin position="3"/>
            <end position="60"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00009437"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS50931"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ABX35095.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="303" mass="32571" checksum="CA691A3717797929" modified="2008-01-15" version="1">MRFDLTDLQLFVHILDCGTLTAAAGRAHMTLASASERVRGMEAQLGCALLARQARGVRPTAAGHTLGQHARDVLARMQRLRGDMAEYGAGLAGHVRVCGNTSAVSEHLPLAVAGFLRGHPRVALELQECRSAEVLDRLRQGLCDIGVASDAQDLRGLQATPWRPDPLVAVLPRAHRLARRKRLALQDLLTEDWVGLPHDAALQVLVRQQAALLEGPSGGQLRWRAQLQHLDSICQLVGQGVGVAVMPAAAAQRLAPASGARAVPLSDAWARRQLLLCTAREDQLPAHARQLLVHLKGLGLAEP</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-05-25" version="68" xmlns="http://uniprot.org/uniprot">
    <accession>A9BVP0</accession>
    <name>A9BVP0_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Ferredoxin</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Daci_2469</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="4" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX35107.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_2469"/>
    <dbReference type="EnsemblBacteria" id="ABX35107">
        <property type="protein sequence ID" value="ABX35107"/>
        <property type="gene ID" value="Daci_2469"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_2469"/>
    <dbReference type="eggNOG" id="COG1018">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_082632_7_2_4"/>
    <dbReference type="OMA" id="RIEWPGL"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051536">
        <property type="term" value="F:iron-sulfur cluster binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd00207">
        <property type="entry name" value="fer2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.10.20.30">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036010">
        <property type="entry name" value="2Fe-2S_ferredoxin-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001041">
        <property type="entry name" value="2Fe-2S_ferredoxin-type"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012675">
        <property type="entry name" value="Beta-grasp_dom_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00111">
        <property type="entry name" value="Fer2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54292">
        <property type="entry name" value="SSF54292"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51085">
        <property type="entry name" value="2FE2S_FER_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="2Fe-2S ferredoxin-type" evidence="2">
        <location>
            <begin position="29"/>
            <end position="117"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="28"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="1"/>
            <end position="23"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS51085"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ABX35107.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="117" mass="12704" checksum="0FD7818717D8ED52" modified="2008-01-15" version="1">MQARQIPHPKQTPMSQDSPASSPFAPPFFTARLTPSGLQVDAWADQPLLHSLEQGGVDWPSSCRNGTCRTCIGQLVSGSVRYEIEWPGVTREERAEGCVLPCIAYPEGDVVLQDPGP</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="72" xmlns="http://uniprot.org/uniprot">
    <accession>A9BVS5</accession>
    <name>A9BVS5_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="5">Ribonuclease VapC</fullName>
            <shortName evidence="5">RNase VapC</shortName>
            <ecNumber evidence="5">3.1.-.-</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="5">Toxin VapC</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="5" type="primary">vapC</name>
        <name evidence="7" type="ordered locus">Daci_2800</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="8" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="5">Toxic component of a toxin-antitoxin (TA) system. An RNase.</text>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="5">
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </cofactor>
    </comment>
    <comment type="similarity">
        <text evidence="5">Belongs to the PINc/VapC protein family.</text>
    </comment>
    <dbReference type="EC" id="3.1.-.-" evidence="5"/>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX35438.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012204648.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_2800"/>
    <dbReference type="EnsemblBacteria" id="ABX35438">
        <property type="protein sequence ID" value="ABX35438"/>
        <property type="gene ID" value="Daci_2800"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_2800"/>
    <dbReference type="eggNOG" id="COG1848">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_146668_1_0_4"/>
    <dbReference type="OMA" id="HWRIFER"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000287">
        <property type="term" value="F:magnesium ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004540">
        <property type="term" value="F:ribonuclease activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0090729">
        <property type="term" value="F:toxin activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0045926">
        <property type="term" value="P:negative regulation of growth"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00265">
        <property type="entry name" value="VapC_Nob1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006226">
        <property type="entry name" value="Mtu_PIN"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029060">
        <property type="entry name" value="PIN-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002716">
        <property type="entry name" value="PIN_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR022907">
        <property type="entry name" value="VapC_family"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01850">
        <property type="entry name" value="PIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF88723">
        <property type="entry name" value="SSF88723"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00028">
        <property type="entry name" value="Mtu_PIN_fam"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4 5" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="5" id="KW-0460">Magnesium</keyword>
    <keyword evidence="3 5" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="2 5" id="KW-0540">Nuclease</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="5" id="KW-0800">Toxin</keyword>
    <keyword evidence="1 5" id="KW-1277">Toxin-antitoxin system</keyword>
    <feature type="domain" description="PINc" evidence="6">
        <location>
            <begin position="4"/>
            <end position="133"/>
        </location>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <position position="4"/>
        </location>
        <ligand>
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <position position="109"/>
        </location>
        <ligand>
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022649"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022722"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00265"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="Pfam" id="PF01850"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="ABX35438.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="145" mass="15789" checksum="0106A26C57107CE1" modified="2008-01-15" version="1">MTPDVNLLVAASRSDHPHHSVARDWLEQAMADASQGVLLKLQPMVVASFLRLVTHPKIFVNPTPMAEALRFIDALLASPGVEQAVLGAEWPALRQLCADKALAANDVPDAWLAAAAIHQGEHVVSFDADFKRLLPRSQFTRLAPQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="35" xmlns="http://uniprot.org/uniprot">
    <accession>A9BW31</accession>
    <name>A9BW31_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Daci_3209</name>
        <name evidence="2" type="ordered locus">Daci_4121</name>
    </gene>
    <organism evidence="1 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
            <strain evidence="1">SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="1" key="3">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX35847.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX36752.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012205047.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_3209"/>
    <dbReference type="PRIDE" id="A9BW31"/>
    <dbReference type="EnsemblBacteria" id="ABX35847">
        <property type="protein sequence ID" value="ABX35847"/>
        <property type="gene ID" value="Daci_3209"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="ABX36752">
        <property type="protein sequence ID" value="ABX36752"/>
        <property type="gene ID" value="Daci_4121"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_3209"/>
    <dbReference type="KEGG" id="dac:Daci_4121"/>
    <dbReference type="HOGENOM" id="CLU_2117014_0_0_4"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ABX35847.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX36752.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="114" mass="12267" checksum="B3244EB4E0A35A26" modified="2008-01-15" version="1">MLDAAKAAAHPAIAEALILLQQERIRDLEMQLATALSNVDAEIVKKAARYDYIKQFGTSGETEALTHPRQVVYASIGFHGHELGAAIDARIAEKNGRAALAQQPQALEFSADAI</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="46" xmlns="http://uniprot.org/uniprot">
    <accession>A9BW83</accession>
    <name>A9BW83_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Daci_3261</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="2" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX35899.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012205099.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_3261"/>
    <dbReference type="PRIDE" id="A9BW83"/>
    <dbReference type="EnsemblBacteria" id="ABX35899">
        <property type="protein sequence ID" value="ABX35899"/>
        <property type="gene ID" value="Daci_3261"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_3261"/>
    <dbReference type="eggNOG" id="ENOG50323MC">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_137743_0_0_4"/>
    <dbReference type="OMA" id="RGGVWGV"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ABX35899.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="174" mass="19127" checksum="F90ECC509C83E589" modified="2008-01-15" version="1">MTLDTIIKTAINPALALLPAAMDTPEARVMLLAIGLQESRFTYRYQLVQGRPGVKGPARGFWQFELGSRASRGGVWGVFLHPSTNRLLRAIAEQRGCLPVPTSIWEAIEQDDVLAAALARLLLFTDARRLPAVGDVQGAWDLYALRTWRPGKPHRQTWDAFHAQARAAVTGAAT</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="46" xmlns="http://uniprot.org/uniprot">
    <accession>A9BWD2</accession>
    <name>A9BWD2_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">GSDH domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_3516</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX36152.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="PRIDE" id="A9BWD2"/>
    <dbReference type="EnsemblBacteria" id="ABX36152">
        <property type="protein sequence ID" value="ABX36152"/>
        <property type="gene ID" value="Daci_3516"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_3516"/>
    <dbReference type="eggNOG" id="COG2133">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_2648512_0_0_4"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.120.10.30">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011042">
        <property type="entry name" value="6-blade_b-propeller_TolB-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012938">
        <property type="entry name" value="Glc/Sorbosone_DH"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07995">
        <property type="entry name" value="GSDH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="GSDH" evidence="1">
        <location>
            <begin position="31"/>
            <end position="71"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF07995"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX36152.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="76" mass="8344" checksum="2783174ED27C3291" modified="2008-01-15" version="1">MFARSKPADCASCTVTCASRRHWLACPLWTGKVTASEQVLPRLGQRVRDVRQGPDGWLHLLTDAQGGQLLRVTATP</sequence>
</entry>
<entry dataset="Swiss-Prot" created="2009-03-24" modified="2022-08-03" version="71" xmlns="http://uniprot.org/uniprot">
    <accession>A9BWE1</accession>
    <name>RLMH_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Ribosomal RNA large subunit methyltransferase H</fullName>
            <ecNumber evidence="1">2.1.1.177</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="1">23S rRNA (pseudouridine1915-N3)-methyltransferase</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="1">23S rRNA m3Psi1915 methyltransferase</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="1">rRNA (pseudouridine-N3-)-methyltransferase RlmH</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="1" type="primary">rlmH</name>
        <name type="ordered locus">Daci_3525</name>
    </gene>
    <organism>
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference key="1">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain>DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="1">Specifically methylates the pseudouridine at position 1915 (m3Psi1915) in 23S rRNA.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>pseudouridine(1915) in 23S rRNA + S-adenosyl-L-methionine = H(+) + N(3)-methylpseudouridine(1915) in 23S rRNA + S-adenosyl-L-homocysteine</text>
            <dbReference type="Rhea" id="RHEA:42752"/>
            <dbReference type="Rhea" id="RHEA-COMP:10221"/>
            <dbReference type="Rhea" id="RHEA-COMP:10222"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:57856"/>
            <dbReference type="ChEBI" id="CHEBI:59789"/>
            <dbReference type="ChEBI" id="CHEBI:65314"/>
            <dbReference type="ChEBI" id="CHEBI:74486"/>
            <dbReference type="EC" id="2.1.1.177"/>
        </reaction>
    </comment>
    <comment type="subunit">
        <text evidence="1">Homodimer.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="1">Belongs to the RNA methyltransferase RlmH family.</text>
    </comment>
    <dbReference type="EC" id="2.1.1.177" evidence="1"/>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX36161.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012205361.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A9BWE1"/>
    <dbReference type="SMR" id="A9BWE1"/>
    <dbReference type="STRING" id="398578.Daci_3525"/>
    <dbReference type="PRIDE" id="A9BWE1"/>
    <dbReference type="EnsemblBacteria" id="ABX36161">
        <property type="protein sequence ID" value="ABX36161"/>
        <property type="gene ID" value="Daci_3525"/>
    </dbReference>
    <dbReference type="GeneID" id="60687751"/>
    <dbReference type="KEGG" id="dac:Daci_3525"/>
    <dbReference type="eggNOG" id="COG1576">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_100552_1_0_4"/>
    <dbReference type="OMA" id="NEPYHHQ"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0070038">
        <property type="term" value="F:rRNA (pseudouridine-N3-)-methyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd18081">
        <property type="entry name" value="RlmH-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.1280.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00658">
        <property type="entry name" value="23SrRNA_methyltr_H"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029028">
        <property type="entry name" value="Alpha/beta_knot_MTases"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003742">
        <property type="entry name" value="RlmH-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029026">
        <property type="entry name" value="tRNA_m1G_MTases_N"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33603">
        <property type="entry name" value="PTHR33603"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02590">
        <property type="entry name" value="SPOUT_MTase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF004505">
        <property type="entry name" value="MT_bac"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF75217">
        <property type="entry name" value="SSF75217"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword id="KW-0963">Cytoplasm</keyword>
    <keyword id="KW-0489">Methyltransferase</keyword>
    <keyword id="KW-1185">Reference proteome</keyword>
    <keyword id="KW-0698">rRNA processing</keyword>
    <keyword id="KW-0949">S-adenosyl-L-methionine</keyword>
    <keyword id="KW-0808">Transferase</keyword>
    <feature type="chain" id="PRO_0000366587" description="Ribosomal RNA large subunit methyltransferase H">
        <location>
            <begin position="1"/>
            <end position="155"/>
        </location>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <position position="72"/>
        </location>
        <ligand>
            <name>S-adenosyl-L-methionine</name>
            <dbReference type="ChEBI" id="CHEBI:59789"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <position position="103"/>
        </location>
        <ligand>
            <name>S-adenosyl-L-methionine</name>
            <dbReference type="ChEBI" id="CHEBI:59789"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <begin position="122"/>
            <end position="127"/>
        </location>
        <ligand>
            <name>S-adenosyl-L-methionine</name>
            <dbReference type="ChEBI" id="CHEBI:59789"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000255" key="1">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00658"/>
        </source>
    </evidence>
    <sequence length="155" mass="17455" checksum="1F6ACB223A88D20C" modified="2008-01-15" version="1">MKLLIVAVGQHVPDWAQTAYDDYAKRFPPELKVELKAVKTEPRGSKTVETLYAAERKRIEAAIPRGTRIVVLDERGTNLTTKALAQRLQGWQLEGDDVALIIGGPDGLDPAFRQAAHERIRLSDLTLPHAMVRVLLIEQLYRAWSVNAGHPYHRE</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="44" xmlns="http://uniprot.org/uniprot">
    <accession>A9BX12</accession>
    <name>A9BX12_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Daci_4366</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="2" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX36997.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012206169.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_4366"/>
    <dbReference type="PRIDE" id="A9BX12"/>
    <dbReference type="EnsemblBacteria" id="ABX36997">
        <property type="protein sequence ID" value="ABX36997"/>
        <property type="gene ID" value="Daci_4366"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_4366"/>
    <dbReference type="eggNOG" id="ENOG50330VF">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_1048168_0_0_4"/>
    <dbReference type="OMA" id="GYNNPFN"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR022261">
        <property type="entry name" value="RNP_Burkhold"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR03795">
        <property type="entry name" value="RNP_Burkhold"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ABX36997.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="261" mass="29058" checksum="49F54E5B0E350888" modified="2008-01-15" version="1">MTTQLQNTEPLLAFRLAYLRAIARSWQDDAYRRDLLGQRDIQPMLHRDFSLPTQWPQVDVSLRLSDDPTQRAEWKPVLTAGWIGPDDEFVIVLPQAPQTHASEALAAYYQLFPNFMGVSTSFEEPSNGTLKAALPTGLGIPGGGPDSLLAFGGVVLRAIALAWQSPEFHAELTRDDGKDKAPVLSQWLGYNNPFNFQVRFETEQAFTWDAARGEWNLQRADGTAIKNGIVLNYPVAPAEQDLWAIALTSYNNTGDAYPFTC</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="48" xmlns="http://uniprot.org/uniprot">
    <accession>A9BX70</accession>
    <name>A9BX70_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Daci_5517</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="4" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX38146.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_5517"/>
    <dbReference type="PRIDE" id="A9BX70"/>
    <dbReference type="EnsemblBacteria" id="ABX38146">
        <property type="protein sequence ID" value="ABX38146"/>
        <property type="gene ID" value="Daci_5517"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_5517"/>
    <dbReference type="eggNOG" id="COG1122">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_680822_0_0_4"/>
    <dbReference type="OMA" id="YREIYAY"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR021986">
        <property type="entry name" value="Spherulin4"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR35040">
        <property type="entry name" value="PTHR35040"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12138">
        <property type="entry name" value="Spherulin4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="2">
        <location>
            <begin position="1"/>
            <end position="20"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5002733140" evidence="2">
        <location>
            <begin position="21"/>
            <end position="411"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="35"/>
            <end position="55"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ABX38146.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="411" mass="41668" checksum="5027259A82DA635F" modified="2008-01-15" version="1">MQRSHAPSPLVLRLGMLALAASVASCGGGGGGDSNAGGGNGGNGGDGGTGQPGVTSVTVQWTAPAARDVVTAGSALTLRAGVLADGVNAADGTVVSFSAATGVSTSALTSSGVATASLTGATPGRQQVQASATVAGRTGSASQTFYLRPAPAPLRVLVPTYFYPTGSGATAWNALTASAQANPTVQMTAILNPANGIFSGPDANITRAATAFANAGGQLVGYVSSSYGTGTRSLASIQANIDNYFTHYGAGLVKGFFIDEMAATTNRLDFYRSIYQYIKAKNPNLIVIGNPGLVPVAGYADVADVLTTFEGKGSTYATYDPRTTSFDWLYGLPNSHQASLVHNVSGCAAMQTAVQSAASARYQAGWIYVTQLEFEPSTGVGNPWAGLPNYWDAFVQTVRATNAGQAMPACS</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="87" xmlns="http://uniprot.org/uniprot">
    <accession>A9BXQ0</accession>
    <name>A9BXQ0_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="3">General secretory pathway protein E</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Daci_5698</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="4" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the GSP E family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX38326.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012207495.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_5698"/>
    <dbReference type="PRIDE" id="A9BXQ0"/>
    <dbReference type="EnsemblBacteria" id="ABX38326">
        <property type="protein sequence ID" value="ABX38326"/>
        <property type="gene ID" value="Daci_5698"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_5698"/>
    <dbReference type="eggNOG" id="COG2804">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_013446_2_0_4"/>
    <dbReference type="OMA" id="LIRKPHG"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.300.160">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003593">
        <property type="entry name" value="AAA+_ATPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001482">
        <property type="entry name" value="T2SS/T4SS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037257">
        <property type="entry name" value="T2SS_E_N_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00437">
        <property type="entry name" value="T2SSE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00382">
        <property type="entry name" value="AAA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF160246">
        <property type="entry name" value="SSF160246"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00662">
        <property type="entry name" value="T2SP_E"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="T2SP_E" evidence="2">
        <location>
            <begin position="307"/>
            <end position="321"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00006611"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS00662"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ABX38326.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="453" mass="50007" checksum="934B79FE06506F36" modified="2008-01-15" version="1">MRYPLPYAFARTSQLLIEDDGHEPLLWHGPSPDWQALSEVQRKHAVQRWQMLDAGTLAHRISAAYSQGESSAALVVSEVESDADLSRMMQELPAVEDLLETADDAPIIRMLNALLTQAARDGASDIHIEPYERHSSVRFRVDGDLREVVQPNRALHAALISRLKIMADLDIAEKRLPQDGRISLRLGTRAIDVRVSTLPSAHGERAVLRLLDKSESKLSLEAVGMQGETLRRFTHMTAQPHGIVLVTGPTGSGKTTTLYAALSRMDASRSNIMTVEDPIEYELAGVGQTQVNAKIDLTFAKALRAILRQDPDVIMIGEIRDFETAQIAIQASLTGHLVLATLHTNDASSAVTRLIDMGVEPFLLSSSLLGVLAQRLVRKIDTTEPSGYRGRTGIFEMLVVDDTIRAQIHRQASEAEIRDTALASGMRLMRDDGERLVREGITTPEEVLRVTRD</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-01-19" version="43" xmlns="http://uniprot.org/uniprot">
    <accession>A9BY36</accession>
    <name>A9BY36_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Daci_1327</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="2" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX33971.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_1327"/>
    <dbReference type="EnsemblBacteria" id="ABX33971">
        <property type="protein sequence ID" value="ABX33971"/>
        <property type="gene ID" value="Daci_1327"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_1327"/>
    <dbReference type="eggNOG" id="ENOG50334EC">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_107081_0_0_4"/>
    <dbReference type="OMA" id="DFAGVRC"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ABX33971.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="225" mass="24111" checksum="C66F0D4D6D5B64D0" modified="2008-01-15" version="1">MQALFIFACLGTVTPSQRRIFFCVSHGVTHVRHRTTVPALCRPSAAHRGRGCGERGSGLSGAALMNALAQHRNAIVAVLASVPQIGVVQDRERHAASDAELAALFTYTPPAAGTAHVRGWWLRRSSTAEHGSSTARTVSVHQWTLHGYLAIADAQASELLLDDLVEQFRALVRADPTLGGVCQPGPLAGSDDSTDGVQVMRAEPVDFAGVRCHSVVLQLRTWSYL</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="69" xmlns="http://uniprot.org/uniprot">
    <accession>A9BY46</accession>
    <name>A9BY46_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="10">Acyl-CoA dehydrogenase domain protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="10" type="ordered locus">Daci_1337</name>
    </gene>
    <organism evidence="10 11">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="10 11" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="11">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="11" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="11">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>FAD</name>
            <dbReference type="ChEBI" id="CHEBI:57692"/>
        </cofactor>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the acyl-CoA dehydrogenase family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX33981.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012203267.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_1337"/>
    <dbReference type="PRIDE" id="A9BY46"/>
    <dbReference type="EnsemblBacteria" id="ABX33981">
        <property type="protein sequence ID" value="ABX33981"/>
        <property type="gene ID" value="Daci_1337"/>
    </dbReference>
    <dbReference type="GeneID" id="60685895"/>
    <dbReference type="KEGG" id="dac:Daci_1337"/>
    <dbReference type="eggNOG" id="COG1960">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_018204_12_2_4"/>
    <dbReference type="OMA" id="MWAKMAK"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0050660">
        <property type="term" value="F:flavin adenine dinucleotide binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016627">
        <property type="term" value="F:oxidoreductase activity, acting on the CH-CH group of donors"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.540.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.110.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025878">
        <property type="entry name" value="Acyl-CoA_dh-like_C_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020953">
        <property type="entry name" value="Acyl-CoA_DH_N_bac"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006091">
        <property type="entry name" value="Acyl-CoA_Oxase/DH_mid-dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR046373">
        <property type="entry name" value="Acyl-CoA_Oxase/DH_mid-dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036250">
        <property type="entry name" value="AcylCo_DH-like_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009075">
        <property type="entry name" value="AcylCo_DH/oxidase_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013786">
        <property type="entry name" value="AcylCoA_DH/ox_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037069">
        <property type="entry name" value="AcylCoA_DH/ox_N_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009100">
        <property type="entry name" value="AcylCoA_DH/oxidase_NM_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00441">
        <property type="entry name" value="Acyl-CoA_dh_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12806">
        <property type="entry name" value="Acyl-CoA_dh_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02770">
        <property type="entry name" value="Acyl-CoA_dh_M"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02771">
        <property type="entry name" value="Acyl-CoA_dh_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12418">
        <property type="entry name" value="AcylCoA_DH_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47203">
        <property type="entry name" value="SSF47203"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56645">
        <property type="entry name" value="SSF56645"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-0274">FAD</keyword>
    <keyword evidence="3" id="KW-0285">Flavoprotein</keyword>
    <keyword evidence="11" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="AcylCoA_DH_N" evidence="8">
        <location>
            <begin position="3"/>
            <end position="35"/>
        </location>
    </feature>
    <feature type="domain" description="Acyl-CoA_dh_N" evidence="7">
        <location>
            <begin position="79"/>
            <end position="160"/>
        </location>
    </feature>
    <feature type="domain" description="Acyl-CoA_dh_M" evidence="6">
        <location>
            <begin position="165"/>
            <end position="276"/>
        </location>
    </feature>
    <feature type="domain" description="Acyl-CoA_dh_1" evidence="5">
        <location>
            <begin position="287"/>
            <end position="456"/>
        </location>
    </feature>
    <feature type="domain" description="Acyl-CoA_dh_C" evidence="9">
        <location>
            <begin position="476"/>
            <end position="596"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001974"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00009347"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022630"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022827"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="Pfam" id="PF00441"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="Pfam" id="PF02770"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="Pfam" id="PF02771"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="Pfam" id="PF12418"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="9">
        <source>
            <dbReference type="Pfam" id="PF12806"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="EMBL" id="ABX33981.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="601" mass="65466" checksum="D5FC7165720AA247" modified="2008-01-15" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="29" xmlns="http://uniprot.org/uniprot">
    <accession>A9BYB2</accession>
    <name>A9BYB2_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Daci_1607</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
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                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
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            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="2" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX34251.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012203536.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_1607"/>
    <dbReference type="PRIDE" id="A9BYB2"/>
    <dbReference type="EnsemblBacteria" id="ABX34251">
        <property type="protein sequence ID" value="ABX34251"/>
        <property type="gene ID" value="Daci_1607"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_1607"/>
    <dbReference type="HOGENOM" id="CLU_1223112_0_0_4"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ABX34251.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="226" mass="24472" checksum="8D516D8191ED81DD" modified="2008-01-15" version="1">MKHAAAKPSRKKIAKADRALFLQAAEALKQAAMTDETHRHSGESDRLLRIASDVARHAAQPGSTCDLQNTAFDVAACINSARLVPGDAESAPRTRLLAEAAQALAQISETPVDGIVFPRTTLHELQARLDTGATPSQWRELAREANYEVQQLAQVLMQMGDHQNTESHIVAHGMAARISQLSEIVYVAAALHGEHRDEWGSQTLRDVRDVFEGGMGRICGDPPDGA</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="62" xmlns="http://uniprot.org/uniprot">
    <accession>A9BYB8</accession>
    <name>A9BYB8_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ordered locus">Daci_1613</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
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            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="5" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX34257.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_1613"/>
    <dbReference type="PRIDE" id="A9BYB8"/>
    <dbReference type="EnsemblBacteria" id="ABX34257">
        <property type="protein sequence ID" value="ABX34257"/>
        <property type="gene ID" value="Daci_1613"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_1613"/>
    <dbReference type="eggNOG" id="COG1475">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_818168_0_0_4"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013741">
        <property type="entry name" value="KorB_domain"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003115">
        <property type="entry name" value="ParB/Sulfiredoxin_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036086">
        <property type="entry name" value="ParB/Sulfiredoxin_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08535">
        <property type="entry name" value="KorB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02195">
        <property type="entry name" value="ParBc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF110849">
        <property type="entry name" value="SSF110849"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="ParB" evidence="2">
        <location>
            <begin position="74"/>
            <end position="129"/>
        </location>
    </feature>
    <feature type="domain" description="KorB" evidence="3">
        <location>
            <begin position="181"/>
            <end position="243"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="27"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="9"/>
            <end position="24"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF02195"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF08535"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="ABX34257.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="339" mass="36852" checksum="BBB6BC2D22B44EEB" modified="2008-01-15" version="1">MPSACAPQSAGPSLWSSATSPTPPRAQHRCALDRNTMTNSVRKMLESKEAKRADAVHVRYESLHVEPGFNLRQQDQDLEESIEALALHIIDGGKYPPLEVRPRDDGGMWIVDGHRRHAAIGRALARNAPLRSPKDGEAWIHVVLFEGNEEDRIARIITSANNKPLTPAEIAEGYKRLKAFGWTPAQIAKKVGRSAQHVQDLLALGNAPSPVREMVKAGQVSATRAAKAARKHGDKATAVLGEQLQQAQAKGKKRITAATAEARKPTPVDADGERYRWLFGARTAEELEAMTADSGPPLDKPQDVVMCELMTNYITKAYADEMIDAARAAQAAIKSGDAP</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="57" xmlns="http://uniprot.org/uniprot">
    <accession>A9BYD2</accession>
    <name>A9BYD2_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">HNH endonuclease</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_1627</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX34271.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012203556.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_1627"/>
    <dbReference type="PRIDE" id="A9BYD2"/>
    <dbReference type="EnsemblBacteria" id="ABX34271">
        <property type="protein sequence ID" value="ABX34271"/>
        <property type="gene ID" value="Daci_1627"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_1627"/>
    <dbReference type="eggNOG" id="COG1403">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_1097206_0_0_4"/>
    <dbReference type="OMA" id="CHRRITM"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004519">
        <property type="term" value="F:endonuclease activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003676">
        <property type="term" value="F:nucleic acid binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd00085">
        <property type="entry name" value="HNHc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002711">
        <property type="entry name" value="HNH"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003615">
        <property type="entry name" value="HNH_nuc"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01844">
        <property type="entry name" value="HNH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00507">
        <property type="entry name" value="HNHc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0255">Endonuclease</keyword>
    <keyword evidence="2" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="2" id="KW-0540">Nuclease</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HNHc" evidence="1">
        <location>
            <begin position="19"/>
            <end position="73"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="SMART" id="SM00507"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX34271.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="253" mass="28351" checksum="5BC353860C27BB60" modified="2008-01-15" version="1">MGWSESSTAKKRLRGRALQQRREQYRRFQPLCVACQARGFVREWDQLDHIVPLHKGGSDDWSNLQGLCIPCHKEKTERELSMLQPSFYPTWLKPAACHLTMVIGPPGSGKTTYAQQHMQPGDRLIDLDLLMCEVSGLPIYQVPPNHLAAAARLRNRRLGALSRPGHPPAWFITTAIGDDRAWWETKLEPARVVVMETSEATCISRIHADARRPEPAKRAALGIVGDWFAAAAGRATKSGRRRTIGLDGFPIED</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-01-19" version="56" xmlns="http://uniprot.org/uniprot">
    <accession>A9BYI8</accession>
    <name>A9BYI8_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Daci_1891</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="4" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX34531.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012203816.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_1891"/>
    <dbReference type="EnsemblBacteria" id="ABX34531">
        <property type="protein sequence ID" value="ABX34531"/>
        <property type="gene ID" value="Daci_1891"/>
    </dbReference>
    <dbReference type="GeneID" id="60686313"/>
    <dbReference type="KEGG" id="dac:Daci_1891"/>
    <dbReference type="eggNOG" id="COG0697">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_056500_0_1_4"/>
    <dbReference type="OMA" id="CIAVTQR"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000620">
        <property type="entry name" value="EamA_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00892">
        <property type="entry name" value="EamA"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="7"/>
            <end position="29"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="35"/>
            <end position="56"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="68"/>
            <end position="88"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="94"/>
            <end position="113"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="122"/>
            <end position="140"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="146"/>
            <end position="165"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="177"/>
            <end position="198"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="210"/>
            <end position="230"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="237"/>
            <end position="258"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="264"/>
            <end position="282"/>
        </location>
    </feature>
    <feature type="domain" description="EamA" evidence="2">
        <location>
            <begin position="6"/>
            <end position="132"/>
        </location>
    </feature>
    <feature type="domain" description="EamA" evidence="2">
        <location>
            <begin position="148"/>
            <end position="279"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF00892"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ABX34531.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="287" mass="29625" checksum="23C3BD6555C33E8B" modified="2008-01-15" version="1">MDKTSSGWINGFIGVAIFAGSLPATRVAVADLDPTFLTCARASIAALLALAMLLALRQPRPARADMPSLALSALGGVVGFPLLTALALQYVTSAHSIVFVGLLPLSTAVFAVLRGGERPRPAFWLFSLAGAAFVAGYAAVGGAGGSLRGDLLMLAAIIVCGLGYAEGARLSRTLGGWQVISWSLVLALPVMLPAALLSMPASLADVGRPAWLGLAYVSLFSMLIGFVFWYRGLAQGGIAAVGQIQLLQPFMGLGLAALLLHEQVSWGMVLVTMAAVVCVAGAKKYAR</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="38" xmlns="http://uniprot.org/uniprot">
    <accession>A9BYL6</accession>
    <name>A9BYL6_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Daci_1919</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="2" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX34559.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012203844.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_1919"/>
    <dbReference type="PRIDE" id="A9BYL6"/>
    <dbReference type="EnsemblBacteria" id="ABX34559">
        <property type="protein sequence ID" value="ABX34559"/>
        <property type="gene ID" value="Daci_1919"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_1919"/>
    <dbReference type="HOGENOM" id="CLU_1988987_0_0_4"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ABX34559.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="125" mass="14065" checksum="FD978FAF92340A62" modified="2008-01-15" version="1">MKKEHPHAKVLRWIADGETVQVQFAKDWHDLSLEGLLRHIAEPRGDYPFRLKPKTILVGDREIEAPVMSGPGYYITDHGDAFRWFGEATLDPGANLQKLGRIYATEEAARAAQEAITALLTREPS</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-01-19" version="43" xmlns="http://uniprot.org/uniprot">
    <accession>A9BYN8</accession>
    <name>A9BYN8_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Putative terminase small subunit protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Daci_1941</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="2" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX34581.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012203866.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_1941"/>
    <dbReference type="EnsemblBacteria" id="ABX34581">
        <property type="protein sequence ID" value="ABX34581"/>
        <property type="gene ID" value="Daci_1941"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_1941"/>
    <dbReference type="eggNOG" id="ENOG5032T8S">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_123874_0_0_4"/>
    <dbReference type="OMA" id="TRKWALA"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ABX34581.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="157" mass="17278" checksum="D213046BE8EC47F7" modified="2008-01-15" version="1">MGRISTFNEDIATKLCDRIAAGESLRKICTDPKMPSMATVMRWLGKPENAAFREQYACARDAQADKLVEEMLEIADEECTMVRSDKHGSKDDDGQGNTEVVFDATAVARNKLRVDARKWVASKMAPKKYGDKVTQEVVGAGGGPVETVTRIELVPLK</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="58" xmlns="http://uniprot.org/uniprot">
    <accession>A9BZ31</accession>
    <name>A9BZ31_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Class I peptide chain release factor</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ordered locus">Daci_2493</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="5" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the prokaryotic/mitochondrial release factor family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX35131.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_2493"/>
    <dbReference type="PRIDE" id="A9BZ31"/>
    <dbReference type="EnsemblBacteria" id="ABX35131">
        <property type="protein sequence ID" value="ABX35131"/>
        <property type="gene ID" value="Daci_2493"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_2493"/>
    <dbReference type="eggNOG" id="COG1186">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_089470_3_0_4"/>
    <dbReference type="OMA" id="SEHRSQW"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003747">
        <property type="term" value="F:translation release factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000352">
        <property type="entry name" value="Pep_chain_release_fac_I"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045853">
        <property type="entry name" value="Pep_chain_release_fac_I_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00472">
        <property type="entry name" value="RF-1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF75620">
        <property type="entry name" value="SSF75620"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00745">
        <property type="entry name" value="RF_PROK_I"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="RF_PROK_I" evidence="3">
        <location>
            <begin position="15"/>
            <end position="31"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="100"/>
            <end position="132"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="2">
        <location>
            <begin position="107"/>
            <end position="132"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00010835"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="PROSITE" id="PS00745"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="ABX35131.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="132" mass="14865" checksum="C5844376E65AC567" modified="2008-01-15" version="1">MRPIELHEVQWTATRAQGAGGQNVNKVSSAVHLRFDVRASRLPEAVQQRLLALRDGRITNEGVVVIKAQQHRTQEQNLRAALQRLNVLVAAAYPEPILRRATRPTLGSQRRRLESKSRHGATKALRGRPRDD</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="37" xmlns="http://uniprot.org/uniprot">
    <accession>A9BZK7</accession>
    <name>A9BZK7_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Daci_3277</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="2" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX35915.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012205115.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="PRIDE" id="A9BZK7"/>
    <dbReference type="EnsemblBacteria" id="ABX35915">
        <property type="protein sequence ID" value="ABX35915"/>
        <property type="gene ID" value="Daci_3277"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_3277"/>
    <dbReference type="HOGENOM" id="CLU_185929_0_0_4"/>
    <dbReference type="OMA" id="HQLTSAI"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ABX35915.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="85" mass="9190" checksum="F2CD358A948FC021" modified="2008-01-15" version="1">MAMDKDTPRTQPPSLHQLTSAITEIHSSVQENCTEISALAQLALAAVHAPQEHHSQQALAHALRAIRDSADLLAGHVKVEARRVV</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="77" xmlns="http://uniprot.org/uniprot">
    <accession>A9BZY5</accession>
    <name>A9BZY5_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Protein-(Glutamine-N5) methyltransferase, ribosomal protein L3-specific</fullName>
            <ecNumber evidence="5">2.1.1.72</ecNumber>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ordered locus">Daci_3613</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="6" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EC" id="2.1.1.72" evidence="5"/>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX36247.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012205447.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_3613"/>
    <dbReference type="PRIDE" id="A9BZY5"/>
    <dbReference type="EnsemblBacteria" id="ABX36247">
        <property type="protein sequence ID" value="ABX36247"/>
        <property type="gene ID" value="Daci_3613"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_3613"/>
    <dbReference type="eggNOG" id="COG2890">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_018398_5_1_4"/>
    <dbReference type="OMA" id="IYYGHGT"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005840">
        <property type="term" value="C:ribosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003676">
        <property type="term" value="F:nucleic acid binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008276">
        <property type="term" value="F:protein methyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009007">
        <property type="term" value="F:site-specific DNA-methyltransferase (adenine-specific) activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.150">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002052">
        <property type="entry name" value="DNA_methylase_N6_adenine_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004556">
        <property type="entry name" value="HemK-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017127">
        <property type="entry name" value="Ribosome_L3_Gln-N5_MeTrfase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029063">
        <property type="entry name" value="SAM-dependent_MTases_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007848">
        <property type="entry name" value="Small_mtfrase_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF05175">
        <property type="entry name" value="MTS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF037167">
        <property type="entry name" value="Mtase_YfcB_prd"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53335">
        <property type="entry name" value="SSF53335"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00536">
        <property type="entry name" value="hemK_fam"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR03533">
        <property type="entry name" value="L3_gln_methyl"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00092">
        <property type="entry name" value="N6_MTASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1 5" id="KW-0489">Methyltransferase</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="5" id="KW-0687">Ribonucleoprotein</keyword>
    <keyword evidence="5" id="KW-0689">Ribosomal protein</keyword>
    <keyword evidence="3" id="KW-0949">S-adenosyl-L-methionine</keyword>
    <keyword evidence="2 5" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="MTS" evidence="4">
        <location>
            <begin position="141"/>
            <end position="221"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022603"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022691"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="Pfam" id="PF05175"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="ABX36247.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="325" mass="34700" checksum="2E3F0003FC017C27" modified="2008-01-15" version="1">MTSAPTPANIPAISGSTIADLVASGAAALTAAGVAFGHGTATAEDEAAWLTLWKLGLPLDSELAPGAPESLADQAVSAQQQAEVAELFAERIQTRKPAAYLTREAWLQGVPFYVDERAIVPRSFIAELLADGSIDGWLSDRTRRVLDLCTGNGSLACLAAMAWPEVEVTGADISADALAVARINVDRHELAERVQLLESDGLAALPGPWDLVLCNPPYVNADSMLRLPAEYQAEPELALAGGADGMDFIRRLLLDLPSRLAKEGVVVLEIGNEKDFFEAAFPDLPVFWLDTSSGDEQVLLITQEALRAWTEGDIEALRPTYRPLG</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2021-06-02" version="42" xmlns="http://uniprot.org/uniprot">
    <accession>A9C0F3</accession>
    <name>A9C0F3_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Daci_4088</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="2" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX36719.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012205911.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_4088"/>
    <dbReference type="EnsemblBacteria" id="ABX36719">
        <property type="protein sequence ID" value="ABX36719"/>
        <property type="gene ID" value="Daci_4088"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_4088"/>
    <dbReference type="eggNOG" id="ENOG50335MA">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_150664_0_0_4"/>
    <dbReference type="OMA" id="ETSIWLA"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025395">
        <property type="entry name" value="DUF4128"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13554">
        <property type="entry name" value="DUF4128"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ABX36719.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="141" mass="15512" checksum="84732C484DC53D81" modified="2008-01-15" version="1">MSAGIETSIWLALKSRIDTLPLAYPRAWPGQTFQVPSSGGLPQPYLRVGRVSADPVRLFLGDGEPHRRTGSLMVTLVHPLGQAVAVYDQIAAGIAAHFVDGTEMAYGDLVITVRDYPHVQEGYEDTGYWSVPVRIPWRCYA</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="79" xmlns="http://uniprot.org/uniprot">
    <accession>A9C0P6</accession>
    <name>A9C0P6_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Transcriptional regulator, MarR family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_4490</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX37119.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012206289.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_4490"/>
    <dbReference type="PRIDE" id="A9C0P6"/>
    <dbReference type="EnsemblBacteria" id="ABX37119">
        <property type="protein sequence ID" value="ABX37119"/>
        <property type="gene ID" value="Daci_4490"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_4490"/>
    <dbReference type="eggNOG" id="COG1846">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_083287_27_2_4"/>
    <dbReference type="OMA" id="HEQWVVE"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003700">
        <property type="term" value="F:DNA-binding transcription factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000835">
        <property type="entry name" value="HTH_MarR-typ"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023187">
        <property type="entry name" value="Tscrpt_reg_MarR-type_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036390">
        <property type="entry name" value="WH_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01047">
        <property type="entry name" value="MarR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00598">
        <property type="entry name" value="HTHMARR"/>
    </dbReference>
    <dbReference type="SMART" id="SM00347">
        <property type="entry name" value="HTH_MARR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46785">
        <property type="entry name" value="SSF46785"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01117">
        <property type="entry name" value="HTH_MARR_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50995">
        <property type="entry name" value="HTH_MARR_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HTH marR-type" evidence="1">
        <location>
            <begin position="12"/>
            <end position="152"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS50995"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX37119.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="162" mass="18439" checksum="766131ECDD8851E6" modified="2008-01-15" version="1">MTHAPDLESRAAPDDHHALRLWLRMLTCCNLIEGEIRNRLRSEFDTTLPRFDLMAQLQRAPEGMKMGELSRHMMVTNGNITGITDQLEKEGLVVRTKVESDRRSSVLHLTPLGRKTFARMAKAHESWVMGMFGDMPQASRNDLYQALGDLKQQVVAHRSPTD</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="68" xmlns="http://uniprot.org/uniprot">
    <accession>A9C129</accession>
    <name>A9C129_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="6">Transcriptional regulator, XRE family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ordered locus">Daci_5864</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="7" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the short-chain fatty acyl-CoA assimilation regulator (ScfR) family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX38492.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012207661.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_5864"/>
    <dbReference type="PRIDE" id="A9C129"/>
    <dbReference type="EnsemblBacteria" id="ABX38492">
        <property type="protein sequence ID" value="ABX38492"/>
        <property type="gene ID" value="Daci_5864"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_5864"/>
    <dbReference type="eggNOG" id="COG1396">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="eggNOG" id="COG3800">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_046383_0_0_4"/>
    <dbReference type="OMA" id="QRAFPPI"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006355">
        <property type="term" value="P:regulation of transcription, DNA-templated"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd00093">
        <property type="entry name" value="HTH_XRE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.260.40">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001387">
        <property type="entry name" value="Cro/C1-type_HTH"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR026281">
        <property type="entry name" value="HTH_RamB"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010359">
        <property type="entry name" value="IrrE_HExxH"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010982">
        <property type="entry name" value="Lambda_DNA-bd_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018653">
        <property type="entry name" value="ScfR_C"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01381">
        <property type="entry name" value="HTH_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF06114">
        <property type="entry name" value="Peptidase_M78"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF09856">
        <property type="entry name" value="ScfRs"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF019251">
        <property type="entry name" value="Rv0465c"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00530">
        <property type="entry name" value="HTH_XRE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47413">
        <property type="entry name" value="SSF47413"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50943">
        <property type="entry name" value="HTH_CROC1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4" id="KW-0804">Transcription</keyword>
    <keyword evidence="2" id="KW-0805">Transcription regulation</keyword>
    <feature type="domain" description="HTH cro/C1-type" evidence="5">
        <location>
            <begin position="10"/>
            <end position="64"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00007227"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023015"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023163"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="PROSITE" id="PS50943"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="ABX38492.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="470" mass="52189" checksum="4D91098A83C0CE5B" modified="2008-01-15" version="1">MKKTFMGVKLRKLRAEHGLSQIALAHALGLSPSYLNQLEQNQRPLTVSVLLKLNRALGVDIQQFSEDEEARLVAGLREALAESPESIALPELQEVAAQMPALGRAVMALHRRHLEALERIESMALRLGDDRSDMPVARTMPFEAVRDFFFAHQNYFDEVDRAAQALAGEARADPGHLADWLVRRLQQRHGVQVHRLEDSRQSQRRFDPATRSLWLSSALEPAQQAFQLGTQLALLEMGDTLDRLIATAAFQGDPASCKLARVGLANYFAGALLLPYDLFLEAAEQLRYDIDLLGQRFGVGFETVCHRLSTLQRPGAPGVPFFFVRVDRAGNISKRQSATHFHFSRTGGTCPLWTVYEAFGQPDQVLRQLASMPDGRRYLWIARSVSHGQRGYGSPRKTFSIGLGCDIRHAARLVYAKGLDLGDPESATPIGMGCKVCERDQCTQRAFPYVGKALHVDENASRFAPYGVGG</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="71" xmlns="http://uniprot.org/uniprot">
    <accession>A9C134</accession>
    <name>A9C134_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">Trehalose 6-phosphate phosphatase</fullName>
            <ecNumber evidence="3">3.1.3.12</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="4" type="ordered locus">Daci_5869</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="5" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="3">Removes the phosphate from trehalose 6-phosphate to produce free trehalose.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="3">
            <text>alpha,alpha-trehalose 6-phosphate + H2O = alpha,alpha-trehalose + phosphate</text>
            <dbReference type="Rhea" id="RHEA:23420"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:16551"/>
            <dbReference type="ChEBI" id="CHEBI:43474"/>
            <dbReference type="ChEBI" id="CHEBI:58429"/>
            <dbReference type="EC" id="3.1.3.12"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="3">
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </cofactor>
    </comment>
    <comment type="pathway">
        <text evidence="1 3">Glycan biosynthesis; trehalose biosynthesis.</text>
    </comment>
    <comment type="similarity">
        <text evidence="2 3">Belongs to the trehalose phosphatase family.</text>
    </comment>
    <dbReference type="EC" id="3.1.3.12" evidence="3"/>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX38497.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012207666.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_5869"/>
    <dbReference type="PRIDE" id="A9C134"/>
    <dbReference type="EnsemblBacteria" id="ABX38497">
        <property type="protein sequence ID" value="ABX38497"/>
        <property type="gene ID" value="Daci_5869"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_5869"/>
    <dbReference type="eggNOG" id="COG1877">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_037265_2_0_4"/>
    <dbReference type="OMA" id="YGAERWD"/>
    <dbReference type="UniPathway" id="UPA00299"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004805">
        <property type="term" value="F:trehalose-phosphatase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005992">
        <property type="term" value="P:trehalose biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniPathway"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.1000">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036412">
        <property type="entry name" value="HAD-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006379">
        <property type="entry name" value="HAD-SF_hydro_IIB"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023214">
        <property type="entry name" value="HAD_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR044651">
        <property type="entry name" value="OTSB-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003337">
        <property type="entry name" value="Trehalose_PPase"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43768">
        <property type="entry name" value="PTHR43768"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02358">
        <property type="entry name" value="Trehalose_PPase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56784">
        <property type="entry name" value="SSF56784"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01484">
        <property type="entry name" value="HAD-SF-IIB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00685">
        <property type="entry name" value="T6PP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3 4" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="3" id="KW-0460">Magnesium</keyword>
    <keyword evidence="3" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00005199"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00008770"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="RuleBase" id="RU361117"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="ABX38497.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="272" mass="28996" checksum="0E29D113C0316248" modified="2008-01-15" version="1">MAADAFLMSIHETGNRYPGASMETPPLPTCRSALFLDFDGTLVPLAETPDVIAPDPALIPMLARLQGMLGGALAIVTGRQLEVLDHFLAPLHLPAACEHGLQRRDGAGRLHPQPLALPETVLQMCNALAADHPRLLVERKRSSVALHYRRAPELAALCLDTLSRALRHLPGLELLHGKCVLEVRPAGVDKGRAIAAFLREEPFAGRTPVFAGDDVTDESGFAVVQAHGGMAIKVGEGASGARHRLDSPQAVHAWLQCACMHLAAQTCAEALP</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="74" xmlns="http://uniprot.org/uniprot">
    <accession>A9C157</accession>
    <name>A9C157_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="11">TonB-dependent siderophore receptor</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="11" type="ordered locus">Daci_5892</name>
    </gene>
    <organism evidence="11 12">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="11 12" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="12">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="12" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="12">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="8">Cell outer membrane</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="1 8">Belongs to the TonB-dependent receptor family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX38520.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012207689.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_5892"/>
    <dbReference type="PRIDE" id="A9C157"/>
    <dbReference type="EnsemblBacteria" id="ABX38520">
        <property type="protein sequence ID" value="ABX38520"/>
        <property type="gene ID" value="Daci_5892"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_5892"/>
    <dbReference type="eggNOG" id="COG4771">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_015930_0_0_4"/>
    <dbReference type="OMA" id="MTGYRIP"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009279">
        <property type="term" value="C:cell outer membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015344">
        <property type="term" value="F:siderophore uptake transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0038023">
        <property type="term" value="F:signaling receptor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.170.130.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.170.20">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR039426">
        <property type="entry name" value="BtuB-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012910">
        <property type="entry name" value="Plug_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037066">
        <property type="entry name" value="Plug_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011662">
        <property type="entry name" value="Secretin/TonB_short_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000531">
        <property type="entry name" value="TonB-dep_rcpt_b-brl"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036942">
        <property type="entry name" value="TonB_rcpt_b-brl_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010105">
        <property type="entry name" value="TonB_sidphr_rcpt"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30069">
        <property type="entry name" value="PTHR30069"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07715">
        <property type="entry name" value="Plug"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00593">
        <property type="entry name" value="TonB_dep_Rec"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00965">
        <property type="entry name" value="STN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01783">
        <property type="entry name" value="TonB-siderophor"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="7" id="KW-0998">Cell outer membrane</keyword>
    <keyword evidence="5 8" id="KW-0472">Membrane</keyword>
    <keyword evidence="6 11" id="KW-0675">Receptor</keyword>
    <keyword evidence="12" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 9" id="KW-0732">Signal</keyword>
    <keyword evidence="4 8" id="KW-0798">TonB box</keyword>
    <keyword evidence="2" id="KW-0813">Transport</keyword>
    <feature type="signal peptide" evidence="9">
        <location>
            <begin position="1"/>
            <end position="37"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5002736071" evidence="9">
        <location>
            <begin position="38"/>
            <end position="843"/>
        </location>
    </feature>
    <feature type="domain" description="STN" evidence="10">
        <location>
            <begin position="69"/>
            <end position="120"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00009810"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022448"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022729"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023077"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023170"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023237"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="RuleBase" id="RU003357"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="10">
        <source>
            <dbReference type="SMART" id="SM00965"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="EMBL" id="ABX38520.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="843" mass="90517" checksum="159C8E25270C32D8" modified="2008-01-15" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="86" xmlns="http://uniprot.org/uniprot">
    <accession>A9C1E1</accession>
    <name>A9C1E1_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Transcriptional regulator, AraC family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ordered locus">Daci_5976</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="6" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX38604.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_5976"/>
    <dbReference type="PRIDE" id="A9C1E1"/>
    <dbReference type="EnsemblBacteria" id="ABX38604">
        <property type="protein sequence ID" value="ABX38604"/>
        <property type="gene ID" value="Daci_5976"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_5976"/>
    <dbReference type="eggNOG" id="COG2207">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_047522_0_1_4"/>
    <dbReference type="OMA" id="DYRVMFS"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003700">
        <property type="term" value="F:DNA-binding transcription factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043565">
        <property type="term" value="F:sequence-specific DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR032687">
        <property type="entry name" value="AraC-type_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009057">
        <property type="entry name" value="Homeobox-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018060">
        <property type="entry name" value="HTH_AraC"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12625">
        <property type="entry name" value="Arabinose_bd"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12833">
        <property type="entry name" value="HTH_18"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00342">
        <property type="entry name" value="HTH_ARAC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46689">
        <property type="entry name" value="SSF46689"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01124">
        <property type="entry name" value="HTH_ARAC_FAMILY_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0804">Transcription</keyword>
    <keyword evidence="1" id="KW-0805">Transcription regulation</keyword>
    <feature type="domain" description="HTH araC/xylS-type" evidence="4">
        <location>
            <begin position="221"/>
            <end position="318"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023015"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023163"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="PROSITE" id="PS01124"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="ABX38604.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="324" mass="36697" checksum="F7ACB180855EF969" modified="2008-01-15" version="1">MLAYERRGISALSALEKAQIAPDSVKERNECITALQMEALSDAAMRELDDEALGWFSRRLPWGSYGMLARASMGSEQLGLALARWCRHHGLLADDIRLTLTQEDGLATLAIEELSTLGAMREFCLLSVLRNIHGLASWFIDEPLPLRRACFPFDPPPHAGVYALLFPPGEVEFGAARACLQFDARFLDMPLTRDEPALQRMLQRALPLQVRPYRRERQLVQRVRQLLAADAECLQTADTLARQLHLSQRSLHRQLKEEGASLQALKDEVRRERAVALLLRTSRPIKRIAQSCGFLNDKSFIRAFRLWTGLSPSEFRKSARARPE</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="43" xmlns="http://uniprot.org/uniprot">
    <accession>A9C1Q3</accession>
    <name>A9C1Q3_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Daci_2600</name>
        <name evidence="2" type="ordered locus">Daci_2634</name>
    </gene>
    <organism evidence="1 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
            <strain evidence="1">SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="1" key="3">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX35238.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX35272.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012204517.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_2600"/>
    <dbReference type="PRIDE" id="A9C1Q3"/>
    <dbReference type="EnsemblBacteria" id="ABX35238">
        <property type="protein sequence ID" value="ABX35238"/>
        <property type="gene ID" value="Daci_2600"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="ABX35272">
        <property type="protein sequence ID" value="ABX35272"/>
        <property type="gene ID" value="Daci_2634"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_2600"/>
    <dbReference type="KEGG" id="dac:Daci_2634"/>
    <dbReference type="eggNOG" id="ENOG5032VSX">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_851841_0_0_4"/>
    <dbReference type="OMA" id="HINPGRE"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006521">
        <property type="entry name" value="Tail_protein_I"/>
    </dbReference>
    <dbReference type="Pfam" id="PF09684">
        <property type="entry name" value="Tail_P2_I"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ABX35238.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX35272.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="326" mass="35554" checksum="93F015AC63A1E0B2" modified="2008-01-15" version="1">MSTAAIVPTAPRRHVLPPNATALEKAVDQVVPNWDGLAGAFPAPAQGEPAAFLPWLAAEWGIAQFDRYFDDVPALIANGLPWLRERGTAASMQRALGWLGYDGAQLDEDGAWLHLDLGRIIGDAELASVAHVVRASLPAHVRFYRVFHGHDLRPLRLDHGPGLDAGMLDNDSGTWIDVSPYGEPVKLSQGLPRRTGTEAPPSDGVLTAQLFRVTTIATYADRMLLDAWTLDSEILIDASLGITEVNATTTGEPAYYAPLRPIPAQAMATHSAWTAPAPLALASLHPWASTERPHDNTRTWTGRWDSTPWRRSFETRTTTTEEPEEP</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="58" xmlns="http://uniprot.org/uniprot">
    <accession>A9C223</accession>
    <name>A9C223_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">NADH:flavin oxidoreductase/NADH oxidase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_3021</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX35659.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012204865.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_3021"/>
    <dbReference type="PRIDE" id="A9C223"/>
    <dbReference type="EnsemblBacteria" id="ABX35659">
        <property type="protein sequence ID" value="ABX35659"/>
        <property type="gene ID" value="Daci_3021"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_3021"/>
    <dbReference type="eggNOG" id="COG1902">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_012153_0_2_4"/>
    <dbReference type="OMA" id="PNRIWYP"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0010181">
        <property type="term" value="F:FMN binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016491">
        <property type="term" value="F:oxidoreductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.20.20.70">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013785">
        <property type="entry name" value="Aldolase_TIM"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001155">
        <property type="entry name" value="OxRdtase_FMN_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045247">
        <property type="entry name" value="Oye-like"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR22893">
        <property type="entry name" value="PTHR22893"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00724">
        <property type="entry name" value="Oxidored_FMN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Oxidored_FMN" evidence="1">
        <location>
            <begin position="8"/>
            <end position="341"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF00724"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX35659.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="368" mass="39594" checksum="DEEF3E4C1E1B68EB" modified="2008-01-15" version="1">MTTASTPLFRPLQLGPLSLPNRMVMAPMTRSRTSQPGDVPNALMATYYAQRASAGLIVSEATQISRQGQGYSFTPGIYSEAQVDGWRRVTEAVHAAGGRMVLQLWHVGRMSHASFHADGLPVAPSALSPQAQVWVVGDDGVGRMVDCPVPRALSAQDIQDVIGDFRRGAANAMRAGFDGVEIHGGNGYLIDQFLRTTSNHRTDAYGGGIAQRTRFAEEVAAAVAGEVGAERTGIRLAPFITQRNMNCPQIIETILHLASRLDEIGLAYIHLSEADWDDAPEIPQDFRHALRRAYQGKVIVAGKYDAERAQAILHEGLADLVAFGRPFIANPDLPARYAAQAPLAAFDPKALFGGDARGYSDYAALATA</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="60" xmlns="http://uniprot.org/uniprot">
    <accession>A9C258</accession>
    <name>A9C258_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">Protein CyaE</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="5" type="ordered locus">Daci_3056</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="6" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="2">CyaE is necessary for transport of calmodulin-sensitive adenylate cyclase-hemolysin (cyclolysin).</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="2">Cell outer membrane</location>
            <topology evidence="2">Peripheral membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="1 2">Belongs to the outer membrane factor (OMF) (TC 1.B.17) family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX35694.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012204900.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_3056"/>
    <dbReference type="PRIDE" id="A9C258"/>
    <dbReference type="EnsemblBacteria" id="ABX35694">
        <property type="protein sequence ID" value="ABX35694"/>
        <property type="gene ID" value="Daci_3056"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_3056"/>
    <dbReference type="eggNOG" id="COG1538">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_012817_10_2_4"/>
    <dbReference type="OMA" id="SQTIWDS"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009279">
        <property type="term" value="C:cell outer membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015562">
        <property type="term" value="F:efflux transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0044179">
        <property type="term" value="P:hemolysis in another organism"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR028351">
        <property type="entry name" value="CyaE"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003423">
        <property type="entry name" value="OMP_efflux"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02321">
        <property type="entry name" value="OEP"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF001892">
        <property type="entry name" value="CyaE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2" id="KW-0998">Cell outer membrane</keyword>
    <keyword evidence="3" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="2" id="KW-0204">Cytolysis</keyword>
    <keyword evidence="2" id="KW-0354">Hemolysis</keyword>
    <keyword evidence="2" id="KW-0472">Membrane</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4" id="KW-0732">Signal</keyword>
    <keyword evidence="2" id="KW-0813">Transport</keyword>
    <feature type="signal peptide" evidence="4">
        <location>
            <begin position="1"/>
            <end position="25"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5002736095" description="Protein CyaE" evidence="4">
        <location>
            <begin position="26"/>
            <end position="485"/>
        </location>
    </feature>
    <feature type="coiled-coil region" evidence="3">
        <location>
            <begin position="193"/>
            <end position="220"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00007613"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="PIRNR" id="PIRNR001892"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="ABX35694.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="485" mass="52756" checksum="0241A3712382500E" modified="2008-01-15" version="1">MSRPPVLLCNCPWRCLLLCIAGCLAALLSVVPMCTLASTDIFQAEERVVQPLTAIARPGSPTPCIFAAMPDPLPVAEAVERMLCNDPNVRLAWAQTRAQAAQVGLKQSAYLPRLNAQLDARQAHSEIQRASGGSGGSRQTYTGAVNLHWVVLDFGAREAALETARQLLRAANASGQAAVQQAFLRSVQLYYQAQSLQERLQAARQVLDLADENHQAANAKYQVGAAALSDMLQAKTALSRASLRVTRIQGSLEQVLGDMALLMGQSADLPLRVETLSAPQPDLSFVVALDELLAIAQQTHPTLRAAQARLSAAQSAVQESRAYGRPNVALTASINRSRSMQPPALGSDFRQSDSSLGLLLNIPLFDGMEREYRIRDAQARAAESTAAMEDTLQRISRDVWLNYQTLKTETESLQRASEIEDQSRQALEVVRGRYRAGVGNMTELLNAMNAFTDAQELHISTLNSWRISRIGLAGSLGRLGFWSLD</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2020-10-07" version="28" xmlns="http://uniprot.org/uniprot">
    <accession>A9C2A0</accession>
    <name>A9C2A0_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Daci_3406</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="2" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX36044.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_3406"/>
    <dbReference type="EnsemblBacteria" id="ABX36044">
        <property type="protein sequence ID" value="ABX36044"/>
        <property type="gene ID" value="Daci_3406"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_3406"/>
    <dbReference type="HOGENOM" id="CLU_1945237_0_0_4"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ABX36044.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="129" mass="14110" checksum="4F20926C22041EA4" modified="2008-01-15" version="1">MPLIQVRNTNDSGTTTIQSDLIEKMEWVGRAWPPYTAITISGKVMTSAESPEEIQSKIRAATAQPPTAQSKADTLARYAAAFELWEDEFRADPSTFLTAEEIAAMEVAPLAVQRAMTFVGYLRAGGQEV</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="52" xmlns="http://uniprot.org/uniprot">
    <accession>A9C2A8</accession>
    <name>A9C2A8_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Histone family protein nucleoid-structuring protein H-NS</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Daci_3414</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="2" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX36052.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012205252.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_3414"/>
    <dbReference type="PRIDE" id="A9C2A8"/>
    <dbReference type="EnsemblBacteria" id="ABX36052">
        <property type="protein sequence ID" value="ABX36052"/>
        <property type="gene ID" value="Daci_3414"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_3414"/>
    <dbReference type="eggNOG" id="COG2916">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_117503_5_1_4"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030527">
        <property type="term" value="F:structural constituent of chromatin"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006355">
        <property type="term" value="P:regulation of transcription, DNA-templated"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="4.10.430.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037150">
        <property type="entry name" value="H-NS_C_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001801">
        <property type="entry name" value="Histone_HNS"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00816">
        <property type="entry name" value="Histone_HNS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ABX36052.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="104" mass="11553" checksum="14CA6FEC002CA613" modified="2008-01-15" version="1">MDSEELAQLRLQYHDLGERIKVGEAMAKKEALQNAKDSMTAAGLTDAEIAAHFSKVRKPTGVSGMKVPAKYRDRATNATWTGRGKAPTWFNQERVQGGHIEQLR</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="68" xmlns="http://uniprot.org/uniprot">
    <accession>A9C2M6</accession>
    <name>A9C2M6_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="7">Secretion protein HlyD family protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ordered locus">Daci_3743</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="8" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX36375.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012205569.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_3743"/>
    <dbReference type="PRIDE" id="A9C2M6"/>
    <dbReference type="EnsemblBacteria" id="ABX36375">
        <property type="protein sequence ID" value="ABX36375"/>
        <property type="gene ID" value="Daci_3743"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_3743"/>
    <dbReference type="eggNOG" id="COG1566">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_018816_15_0_4"/>
    <dbReference type="OMA" id="VQITPQI"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0055085">
        <property type="term" value="P:transmembrane transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043602">
        <property type="entry name" value="CusB_dom_1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR032317">
        <property type="entry name" value="HlyD_D23"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00529">
        <property type="entry name" value="CusB_dom_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF16576">
        <property type="entry name" value="HlyD_D23"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="4" id="KW-0472">Membrane</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="4" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="4">
        <location>
            <begin position="31"/>
            <end position="51"/>
        </location>
    </feature>
    <feature type="domain" description="CusB_dom_1" evidence="5">
        <location>
            <begin position="36"/>
            <end position="367"/>
        </location>
    </feature>
    <feature type="domain" description="HlyD_D23" evidence="6">
        <location>
            <begin position="67"/>
            <end position="310"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="3">
        <location>
            <begin position="1"/>
            <end position="22"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="3">
        <location>
            <begin position="427"/>
            <end position="453"/>
        </location>
    </feature>
    <feature type="coiled-coil region" evidence="2">
        <location>
            <begin position="108"/>
            <end position="156"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00009477"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="Pfam" id="PF00529"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="Pfam" id="PF16576"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="ABX36375.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="453" mass="47371" checksum="6F9AB8F188CFBFA8" modified="2008-01-15" version="1">MTDTNKQAPSPAAAPAAASPVANPQGRRKGLTLVAAAVAVAAVAWGGWHWMVARNYQTTDNAYVAGNVVQITPQIGGTVISIGADDTDYVKPGQLLVQLDSADALVALSQAESQLAQTVRQVRTLYANNAPLVAQVAQREADLARLQADAARAREDVDRRRPLLATGAVGKEEFDHAQSLARTAGNAASAAEAAVRAAKAQLTAAEAQTKGSSAEEHPSVIAASAKVREAYLALQRTRLVSPVEGYVAKRGVQLGQRVASGAPLMTVVGLHNLWVDANFKESQLAQLRIGQKTELTADVYGDKISYHGTVVGMGAGTGAAFSLLPAQNATGNWIKVVQRVPVRIALAPEDLAQHPLRVGLSMEVKVDVRDQQGEVLATATRNAPVAQTSIYDMALPQAEERIAHIVAGQNVAPLKQLPELPPVAMADAQDRAQGKAPAAVASAPVDAQATQSK</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="39" xmlns="http://uniprot.org/uniprot">
    <accession>A9C2U1</accession>
    <name>A9C2U1_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Daci_4114</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="4" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX36745.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012205935.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_4114"/>
    <dbReference type="PRIDE" id="A9C2U1"/>
    <dbReference type="EnsemblBacteria" id="ABX36745">
        <property type="protein sequence ID" value="ABX36745"/>
        <property type="gene ID" value="Daci_4114"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_4114"/>
    <dbReference type="HOGENOM" id="CLU_1394339_0_0_4"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="2">
        <location>
            <begin position="1"/>
            <end position="19"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5002732787" evidence="2">
        <location>
            <begin position="20"/>
            <end position="195"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="175"/>
            <end position="195"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="179"/>
            <end position="195"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ABX36745.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="195" mass="21021" checksum="BEEDE7C578D47B0A" modified="2008-01-15" version="1">MKNLIIAAAFAACSLTALADDFSYKGVSLGASMEQFQAALPLYQCKDDACTYTRDSCAPTYMRGGAAAFEQKLAECREGTSFGGGMVTYGRAKFIDGKFSSLYLIFPIAHARVVGDALEEKYGKPATIDTKPVKNRAGAEFDNWVKTWAKGDSDLVARLRASQIDEGSVSIRSAAAKAEEQARQQQQTKAGAKDF</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-01-19" version="34" xmlns="http://uniprot.org/uniprot">
    <accession>A9C2V1</accession>
    <name>A9C2V1_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Daci_4124</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="2" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX36755.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_4124"/>
    <dbReference type="EnsemblBacteria" id="ABX36755">
        <property type="protein sequence ID" value="ABX36755"/>
        <property type="gene ID" value="Daci_4124"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_4124"/>
    <dbReference type="HOGENOM" id="CLU_2860306_0_0_4"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ABX36755.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="64" mass="7279" checksum="9386081E733D8B26" modified="2008-01-15" version="1">MSSDMPTYAELQAEIAQLRGEMLRYLPLIEKAERWSSTWAFLTEGTGIATANGYRAALQQEKRQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="84" xmlns="http://uniprot.org/uniprot">
    <accession>A9C3C6</accession>
    <name>A9C3C6_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Transcriptional regulator, LysR family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ordered locus">Daci_4608</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="5" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the LysR transcriptional regulatory family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX37237.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_4608"/>
    <dbReference type="PRIDE" id="A9C3C6"/>
    <dbReference type="EnsemblBacteria" id="ABX37237">
        <property type="protein sequence ID" value="ABX37237"/>
        <property type="gene ID" value="Daci_4608"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_4608"/>
    <dbReference type="eggNOG" id="COG0583">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_039613_37_1_4"/>
    <dbReference type="OMA" id="DHRQMRI"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003700">
        <property type="term" value="F:DNA-binding transcription factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005119">
        <property type="entry name" value="LysR_subst-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000847">
        <property type="entry name" value="Tscrpt_reg_HTH_LysR"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036390">
        <property type="entry name" value="WH_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00126">
        <property type="entry name" value="HTH_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03466">
        <property type="entry name" value="LysR_substrate"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00039">
        <property type="entry name" value="HTHLYSR"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46785">
        <property type="entry name" value="SSF46785"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50931">
        <property type="entry name" value="HTH_LYSR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HTH lysR-type" evidence="3">
        <location>
            <begin position="41"/>
            <end position="98"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="1"/>
            <end position="23"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00009437"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="PROSITE" id="PS50931"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="ABX37237.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="332" mass="36659" checksum="E55B9440E687736A" modified="2008-01-15" version="1">MQYTISGRPWPQVSLHSSSGTNENCCRKHCIKLMNYRRLTPSMSLLLVFEAAARHESYARAAEELSLSQSAISRQVQTLEAQLGISLFRREGRTVRLTDVGRRYFIDLGAALGRIRSATLQAMSRQSGGGTLNLATLPTFGSKWLLPHLHGFYQAQPGVTMHIHSRIGDIDFDSAEIDAAITVGTGDRPGLTAHRLYHEFLVAVASPQALQQAGQAAASPDWAGQQVLLTVASNRQAWSEWFTHYRLDHRQMRIGPSFELTSHLIQAVLAGMGVGLVPRVLVEEEMARGELHVVGDAIPSQRSYYLVYPERNATLPALAAFRQWLLATCAQG</sequence>
</entry>
<entry dataset="Swiss-Prot" created="2009-03-24" modified="2022-08-03" version="76" xmlns="http://uniprot.org/uniprot">
    <accession>A9C3D0</accession>
    <name>SYFA_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Phenylalanine--tRNA ligase alpha subunit</fullName>
            <ecNumber evidence="1">6.1.1.20</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="1">Phenylalanyl-tRNA synthetase alpha subunit</fullName>
            <shortName evidence="1">PheRS</shortName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="1" type="primary">pheS</name>
        <name type="ordered locus">Daci_4612</name>
    </gene>
    <organism>
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference key="1">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain>DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>ATP + L-phenylalanine + tRNA(Phe) = AMP + diphosphate + H(+) + L-phenylalanyl-tRNA(Phe)</text>
            <dbReference type="Rhea" id="RHEA:19413"/>
            <dbReference type="Rhea" id="RHEA-COMP:9668"/>
            <dbReference type="Rhea" id="RHEA-COMP:9699"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:33019"/>
            <dbReference type="ChEBI" id="CHEBI:58095"/>
            <dbReference type="ChEBI" id="CHEBI:78442"/>
            <dbReference type="ChEBI" id="CHEBI:78531"/>
            <dbReference type="ChEBI" id="CHEBI:456215"/>
            <dbReference type="EC" id="6.1.1.20"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </cofactor>
        <text evidence="1">Binds 2 magnesium ions per tetramer.</text>
    </comment>
    <comment type="subunit">
        <text evidence="1">Tetramer of two alpha and two beta subunits.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="1">Belongs to the class-II aminoacyl-tRNA synthetase family. Phe-tRNA synthetase alpha subunit type 1 subfamily.</text>
    </comment>
    <dbReference type="EC" id="6.1.1.20" evidence="1"/>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX37241.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012206411.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A9C3D0"/>
    <dbReference type="SMR" id="A9C3D0"/>
    <dbReference type="STRING" id="398578.Daci_4612"/>
    <dbReference type="PRIDE" id="A9C3D0"/>
    <dbReference type="EnsemblBacteria" id="ABX37241">
        <property type="protein sequence ID" value="ABX37241"/>
        <property type="gene ID" value="Daci_4612"/>
    </dbReference>
    <dbReference type="GeneID" id="60688854"/>
    <dbReference type="KEGG" id="dac:Daci_4612"/>
    <dbReference type="eggNOG" id="COG0016">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_025086_0_1_4"/>
    <dbReference type="OMA" id="DWHNFTA"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000287">
        <property type="term" value="F:magnesium ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004826">
        <property type="term" value="F:phenylalanine-tRNA ligase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000049">
        <property type="term" value="F:tRNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006432">
        <property type="term" value="P:phenylalanyl-tRNA aminoacylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.930.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00281">
        <property type="entry name" value="Phe_tRNA_synth_alpha1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006195">
        <property type="entry name" value="aa-tRNA-synth_II"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045864">
        <property type="entry name" value="aa-tRNA-synth_II/BPL/LPL"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004529">
        <property type="entry name" value="Phe-tRNA-synth_IIc_asu"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004530">
        <property type="entry name" value="Phe-tRNA-synth_IIc_mito"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004188">
        <property type="entry name" value="Phe-tRNA_ligase_II_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR022911">
        <property type="entry name" value="Phe_tRNA_ligase_alpha1_bac"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002319">
        <property type="entry name" value="Phenylalanyl-tRNA_Synthase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010978">
        <property type="entry name" value="tRNA-bd_arm"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11538:SF41">
        <property type="entry name" value="PTHR11538:SF41"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02912">
        <property type="entry name" value="Phe_tRNA-synt_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01409">
        <property type="entry name" value="tRNA-synt_2d"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46589">
        <property type="entry name" value="SSF46589"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55681">
        <property type="entry name" value="SSF55681"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00468">
        <property type="entry name" value="pheS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50862">
        <property type="entry name" value="AA_TRNA_LIGASE_II"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword id="KW-0030">Aminoacyl-tRNA synthetase</keyword>
    <keyword id="KW-0067">ATP-binding</keyword>
    <keyword id="KW-0963">Cytoplasm</keyword>
    <keyword id="KW-0436">Ligase</keyword>
    <keyword id="KW-0460">Magnesium</keyword>
    <keyword id="KW-0479">Metal-binding</keyword>
    <keyword id="KW-0547">Nucleotide-binding</keyword>
    <keyword id="KW-0648">Protein biosynthesis</keyword>
    <keyword id="KW-1185">Reference proteome</keyword>
    <feature type="chain" id="PRO_1000114865" description="Phenylalanine--tRNA ligase alpha subunit">
        <location>
            <begin position="1"/>
            <end position="350"/>
        </location>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <position position="271"/>
        </location>
        <ligand>
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
            <note>shared with beta subunit</note>
        </ligand>
    </feature>
    <evidence type="ECO:0000255" key="1">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00281"/>
        </source>
    </evidence>
    <sequence length="350" mass="39062" checksum="E68627D58C1C2850" modified="2008-01-15" version="1">MNELDSLVESAQQLFAQAQTPADLENAKAQFLGKSGKVTELMKGMAQLSVEEKKSRGAAINVAKQGIEAALTARRKALADAELQAHLKAEVLDVTLPGRRRGQGGLHPVSLTLERIEGIFGSMGFDVAEGPEIESDWFNFTALNTPEDHPARSMHDTFYVEGGTEQAPNLLRTHTSPMQVRHAVQHVKKYRERLDAGQGMPEIRVIAPGRTYRVDSDATHSPMFHQCEGLWIGENVSFKDLKVVFTDFCKTFFESDDLVLRFRPSFFPFTEPSAEIDIQFQSGPLAGRWLEVAGSGQVHPNVVRNMGLDPEKYIGFAFGMGPDRLTMLRYGVNDLRLFFDGDIRFLSQFR</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="65" xmlns="http://uniprot.org/uniprot">
    <accession>A9C3M8</accession>
    <name>A9C3M8_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Glutathione S-transferase domain</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Daci_4710</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="4" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX37339.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012206509.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_4710"/>
    <dbReference type="PRIDE" id="A9C3M8"/>
    <dbReference type="EnsemblBacteria" id="ABX37339">
        <property type="protein sequence ID" value="ABX37339"/>
        <property type="gene ID" value="Daci_4710"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_4710"/>
    <dbReference type="eggNOG" id="COG0625">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_011226_6_2_4"/>
    <dbReference type="OMA" id="ESNTICR"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016740">
        <property type="term" value="F:transferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006749">
        <property type="term" value="P:glutathione metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010987">
        <property type="entry name" value="Glutathione-S-Trfase_C-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036282">
        <property type="entry name" value="Glutathione-S-Trfase_C_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004045">
        <property type="entry name" value="Glutathione_S-Trfase_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036249">
        <property type="entry name" value="Thioredoxin-like_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02798">
        <property type="entry name" value="GST_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47616">
        <property type="entry name" value="SSF47616"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52833">
        <property type="entry name" value="SSF52833"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50405">
        <property type="entry name" value="GST_CTER"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50404">
        <property type="entry name" value="GST_NTER"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="GST N-terminal" evidence="1">
        <location>
            <begin position="1"/>
            <end position="81"/>
        </location>
    </feature>
    <feature type="domain" description="GST C-terminal" evidence="2">
        <location>
            <begin position="86"/>
            <end position="207"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS50404"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS50405"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ABX37339.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="207" mass="23471" checksum="EF97E9B92B80ED3D" modified="2008-01-15" version="1">MIRILGKSSSINVRKVLWLCVELGISLDQEEWGSGHRSTQEPEFLALNPNAMVPVLLDGPLVLWESNTICRYLAARHDRQDLLPAAPAERALVEQWMDWQATELNNAWRYAFMGLVRHSPEHKDPVQLAGSMANWHRHMRILEDQLSRTGAFAAGAQLSLADIVLGLSTHRWMSAPMERPELPAVRAYYERLCERPGFRLHGANGMP</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="52" xmlns="http://uniprot.org/uniprot">
    <accession>A9BLR1</accession>
    <name>A9BLR1_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_4219</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX36850.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_4219"/>
    <dbReference type="PRIDE" id="A9BLR1"/>
    <dbReference type="EnsemblBacteria" id="ABX36850">
        <property type="protein sequence ID" value="ABX36850"/>
        <property type="gene ID" value="Daci_4219"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_4219"/>
    <dbReference type="eggNOG" id="COG0457">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_876687_0_0_4"/>
    <dbReference type="OMA" id="APDWWNV"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.25.40.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011990">
        <property type="entry name" value="TPR-like_helical_dom_sf"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48452">
        <property type="entry name" value="SSF48452"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="308"/>
            <end position="327"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX36850.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="327" mass="36277" checksum="BEC5FD0241F614DB" modified="2008-01-15" version="1">MPHRSTVTSSTPDEFEALHDQAYADMERGALAEAAQAFEALAAHMPDNRHYHYMLGLARKYQRDWQPSLDHNLRAIALAGEDDEASLWNGAIAATALSDWATARRLWKACGIQVPGEQGTIEGDYGVAVVRLHPWQGGETVFMRRIDPVRAQLLNVPLPESGHRFGDIVLHDGASTGQRFNGQREVPVFNELQRLEPSAFQTFVVFITCANAQDLQELLGTEAPGIGYAEDWTASIRHYCMRCSYGTPHQHAEETSPREDEPSWQTDRNLGIAAVDRAAVDVLLNAWQAGGAGRRIDAVQTRELPVPDEEESWAWWVGPEGAEDEAP</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="38" xmlns="http://uniprot.org/uniprot">
    <accession>A9BLS1</accession>
    <name>A9BLS1_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_4229</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX36860.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012206032.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_4229"/>
    <dbReference type="PRIDE" id="A9BLS1"/>
    <dbReference type="EnsemblBacteria" id="ABX36860">
        <property type="protein sequence ID" value="ABX36860"/>
        <property type="gene ID" value="Daci_4229"/>
    </dbReference>
    <dbReference type="GeneID" id="60688489"/>
    <dbReference type="KEGG" id="dac:Daci_4229"/>
    <dbReference type="HOGENOM" id="CLU_2092807_0_0_4"/>
    <dbReference type="OMA" id="DHALMDD"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="101"/>
            <end position="120"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX36860.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="120" mass="13022" checksum="786ABD93CF93CA8C" modified="2008-01-15" version="1">MSRWFIAVFSLHFVVSVALSTLGLAPWRALPHEPCEPPGVHPRAACAGPERAAAPRVDTVSLLDDFDHALMDDQQDLPDVVHAVDGMPAPRLQAGRHITASLREGPWRSLAPPDRPPRAA</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="60" xmlns="http://uniprot.org/uniprot">
    <accession>A9BM88</accession>
    <name>A9BM88_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Alpha/beta hydrolase fold</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_4804</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX37433.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012206603.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_4804"/>
    <dbReference type="PRIDE" id="A9BM88"/>
    <dbReference type="EnsemblBacteria" id="ABX37433">
        <property type="protein sequence ID" value="ABX37433"/>
        <property type="gene ID" value="Daci_4804"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_4804"/>
    <dbReference type="eggNOG" id="COG2267">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_020336_13_5_4"/>
    <dbReference type="OMA" id="RGLMPVP"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016787">
        <property type="term" value="F:hydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.1820">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029058">
        <property type="entry name" value="AB_hydrolase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000073">
        <property type="entry name" value="AB_hydrolase_1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000639">
        <property type="entry name" value="Epox_hydrolase-like"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12697">
        <property type="entry name" value="Abhydrolase_6"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00111">
        <property type="entry name" value="ABHYDROLASE"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00412">
        <property type="entry name" value="EPOXHYDRLASE"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53474">
        <property type="entry name" value="SSF53474"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="AB hydrolase-1" evidence="1">
        <location>
            <begin position="54"/>
            <end position="316"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF12697"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX37433.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="325" mass="36382" checksum="483181C6F2B30C83" modified="2008-01-15" version="1">MLQAPSSLSAPAAEEAPIYVARRPWRSRMVPVRTMEYHVREWGPVDGDPALAPLVLVHGWMDVAASYQFVVDAFGEAFMAGRRIIAPDWRGFGLSRPAWPADRHDFADYLGDLDHLLDILVGDTPVDLVGHSMGGNVSMMYAGARPARIRRLVNLEGFGMPATRPDQAPARYAQWMDELRQLRSGGMELKSYDSVQDVARRLMKTNRRLPGDKALWLAHHWAAPNAQGRWEILGDTAHKLISAQLFRVEEILALYRAITAPVLAVEASDDSLGMWWKDRYTLAEYHERIGQIAVCRTAVVQDAGHMLHHDQPADVAGLIEQFLST</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="36" xmlns="http://uniprot.org/uniprot">
    <accession>A9BM90</accession>
    <name>A9BM90_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Daci_4806</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="2" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX37435.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012206605.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="PRIDE" id="A9BM90"/>
    <dbReference type="EnsemblBacteria" id="ABX37435">
        <property type="protein sequence ID" value="ABX37435"/>
        <property type="gene ID" value="Daci_4806"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_4806"/>
    <dbReference type="eggNOG" id="ENOG50340MW">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_1977880_0_0_4"/>
    <dbReference type="OMA" id="YIGCYLL"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ABX37435.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="126" mass="13944" checksum="20363D55C5018BE7" modified="2008-01-15" version="1">MWPFSLLKKLTQDPPVGQPRGDYIGCYLLGTEAPGQAGVSYVSLATTREQLEADARAYLEGFVRDHPEAADTDLSAIRSLLENLPQRLDAHLSGDTRVPLAEQGGTVLFLRTGMRARRKENGRYLE</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="45" xmlns="http://uniprot.org/uniprot">
    <accession>A9BM96</accession>
    <name>A9BM96_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Daci_4812</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="2" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX37441.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012206611.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_4812"/>
    <dbReference type="PRIDE" id="A9BM96"/>
    <dbReference type="EnsemblBacteria" id="ABX37441">
        <property type="protein sequence ID" value="ABX37441"/>
        <property type="gene ID" value="Daci_4812"/>
    </dbReference>
    <dbReference type="GeneID" id="60689150"/>
    <dbReference type="KEGG" id="dac:Daci_4812"/>
    <dbReference type="eggNOG" id="COG1526">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_185928_0_0_4"/>
    <dbReference type="OMA" id="GERQCAV"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036390">
        <property type="entry name" value="WH_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46785">
        <property type="entry name" value="SSF46785"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ABX37441.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="93" mass="9980" checksum="0A889D7E8795AF7E" modified="2008-01-15" version="1">MEELAAAILRELATEPAPMSLPRLGKRLGQGASVLMRCLALMGDAPIAGTPGPGWVRLEQEEGRWLAALTERGRLWVEAEACQALAEGTGRVR</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="62" xmlns="http://uniprot.org/uniprot">
    <accession>A9BMA6</accession>
    <name>A9BMA6_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Enoyl-CoA hydratase/isomerase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_4822</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the enoyl-CoA hydratase/isomerase family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX37451.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012206621.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_4822"/>
    <dbReference type="PRIDE" id="A9BMA6"/>
    <dbReference type="EnsemblBacteria" id="ABX37451">
        <property type="protein sequence ID" value="ABX37451"/>
        <property type="gene ID" value="Daci_4822"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_4822"/>
    <dbReference type="eggNOG" id="COG1024">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_009834_7_2_4"/>
    <dbReference type="OMA" id="LDCEKPV"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016853">
        <property type="term" value="F:isomerase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.12.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029045">
        <property type="entry name" value="ClpP/crotonase-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001753">
        <property type="entry name" value="Enoyl-CoA_hydra/iso"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014748">
        <property type="entry name" value="Enoyl-CoA_hydra_C"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00378">
        <property type="entry name" value="ECH_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52096">
        <property type="entry name" value="SSF52096"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2" id="KW-0413">Isomerase</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00005254"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX37451.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="285" mass="30229" checksum="ADD743DA6F879101" modified="2008-01-15" version="1">MNSSPAVRMERHGDNGDSGEIALIVLQDSARMNPLGRPLQLRLRELLAEVREDTTLRALVLTAEGRGFCVGADLSSMGGAQGGAQGGAQADGRTLGAQTADNMHQLSNRLILDLQQLPVPVVCAINGAAAGAGVGLALAGDVALAARSAYFYLPFLPRLGIVPDLGTTWFIERRLGRARALGLSLLGDRLGAQQAADWGLVWACVDDEALREQALATAARLARLPAGAVLEARRALDHAAASTLEQQLHYEAERQRELVGAPAFMEGVQAFMQKREPVFAPRQPG</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="66" xmlns="http://uniprot.org/uniprot">
    <accession>A9BMC1</accession>
    <name>A9BMC1_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Glutathione S-transferase domain</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Daci_4837</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="4" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX37466.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012206636.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_4837"/>
    <dbReference type="PRIDE" id="A9BMC1"/>
    <dbReference type="EnsemblBacteria" id="ABX37466">
        <property type="protein sequence ID" value="ABX37466"/>
        <property type="gene ID" value="Daci_4837"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_4837"/>
    <dbReference type="eggNOG" id="COG0625">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_011226_6_1_4"/>
    <dbReference type="OMA" id="HVNHAHR"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016740">
        <property type="term" value="F:transferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006749">
        <property type="term" value="P:glutathione metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010987">
        <property type="entry name" value="Glutathione-S-Trfase_C-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036282">
        <property type="entry name" value="Glutathione-S-Trfase_C_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR040079">
        <property type="entry name" value="Glutathione_S-Trfase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004045">
        <property type="entry name" value="Glutathione_S-Trfase_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036249">
        <property type="entry name" value="Thioredoxin-like_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02798">
        <property type="entry name" value="GST_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SFLD" id="SFLDS00019">
        <property type="entry name" value="Glutathione_Transferase_(cytos"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47616">
        <property type="entry name" value="SSF47616"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52833">
        <property type="entry name" value="SSF52833"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50405">
        <property type="entry name" value="GST_CTER"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50404">
        <property type="entry name" value="GST_NTER"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="GST N-terminal" evidence="1">
        <location>
            <begin position="1"/>
            <end position="82"/>
        </location>
    </feature>
    <feature type="domain" description="GST C-terminal" evidence="2">
        <location>
            <begin position="88"/>
            <end position="206"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS50404"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS50405"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ABX37466.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="206" mass="22482" checksum="F5650AE92EFE77A9" modified="2008-01-15" version="1">MTTLKLYYAPGTCALATRIALIEANAPHEVIKLDFPKGEQRSPEYLAINPKGRVPALVTERGVLTETPALLAYVARRFPEARLAPLDDAYAFAHMQDFHSYLSSTVHVAHAHGRRAGRWADDEAAIASMQRKVAANMAECFGVIERHYLGDAPWVLGADYSVADAYLFTIAGWLEGDGVDIAGFPKVQAHFKRMGERAAVRGALGS</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="90" xmlns="http://uniprot.org/uniprot">
    <accession>A9BMP2</accession>
    <name>A9BMP2_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Transcriptional regulator, AraC family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ordered locus">Daci_4958</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="5" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX37587.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012206757.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_4958"/>
    <dbReference type="PRIDE" id="A9BMP2"/>
    <dbReference type="EnsemblBacteria" id="ABX37587">
        <property type="protein sequence ID" value="ABX37587"/>
        <property type="gene ID" value="Daci_4958"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_4958"/>
    <dbReference type="eggNOG" id="COG4977">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_1608162_0_0_4"/>
    <dbReference type="OMA" id="FTSFSHF"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003700">
        <property type="term" value="F:DNA-binding transcription factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043565">
        <property type="term" value="F:sequence-specific DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009057">
        <property type="entry name" value="Homeobox-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018060">
        <property type="entry name" value="HTH_AraC"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018062">
        <property type="entry name" value="HTH_AraC-typ_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020449">
        <property type="entry name" value="Tscrpt_reg_HTH_AraC-type"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12833">
        <property type="entry name" value="HTH_18"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00032">
        <property type="entry name" value="HTHARAC"/>
    </dbReference>
    <dbReference type="SMART" id="SM00342">
        <property type="entry name" value="HTH_ARAC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46689">
        <property type="entry name" value="SSF46689"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00041">
        <property type="entry name" value="HTH_ARAC_FAMILY_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01124">
        <property type="entry name" value="HTH_ARAC_FAMILY_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HTH araC/xylS-type" evidence="3">
        <location>
            <begin position="60"/>
            <end position="159"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="1"/>
            <end position="34"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="2">
        <location>
            <begin position="1"/>
            <end position="15"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="PROSITE" id="PS01124"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="ABX37587.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="165" mass="18606" checksum="A102AC54B382A108" modified="2008-01-15" version="1">MQASYDSTQIQDHGDHAGSTPPASPGLQPKDEEQDLRPSLLNVLLTSSSPGDFRTRNRLAQAKQYMRARLDDPELKPLQVAQDMGMSLRSLARLFATEGLTPSRWLWNERLAQAHLLLRADNARRVTDVALACGFTSFSHFSRVFRQAYDVPPSALLKPKRRRVH</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="96" xmlns="http://uniprot.org/uniprot">
    <accession>A9BMV3</accession>
    <name>A9BMV3_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="6">4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase (flavodoxin)</fullName>
            <ecNumber evidence="6">1.17.7.3</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="6">1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="6" type="primary">ispG</name>
        <name evidence="7" type="ordered locus">Daci_5019</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="8" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="6">Converts 2C-methyl-D-erythritol 2,4-cyclodiphosphate (ME-2,4cPP) into 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="6">
            <text>(2E)-4-hydroxy-3-methylbut-2-enyl diphosphate + 2 H(+) + H2O + oxidized [flavodoxin] = 2-C-methyl-D-erythritol 2,4-cyclic diphosphate + reduced [flavodoxin]</text>
            <dbReference type="Rhea" id="RHEA:43604"/>
            <dbReference type="Rhea" id="RHEA-COMP:10622"/>
            <dbReference type="Rhea" id="RHEA-COMP:10623"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:57618"/>
            <dbReference type="ChEBI" id="CHEBI:58210"/>
            <dbReference type="ChEBI" id="CHEBI:58483"/>
            <dbReference type="ChEBI" id="CHEBI:128753"/>
            <dbReference type="EC" id="1.17.7.3"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="6">
            <name>[4Fe-4S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:49883"/>
        </cofactor>
        <text evidence="6">Binds 1 [4Fe-4S] cluster.</text>
    </comment>
    <comment type="pathway">
        <text evidence="6">Isoprenoid biosynthesis; isopentenyl diphosphate biosynthesis via DXP pathway; isopentenyl diphosphate from 1-deoxy-D-xylulose 5-phosphate: step 5/6.</text>
    </comment>
    <comment type="similarity">
        <text evidence="6">Belongs to the IspG family.</text>
    </comment>
    <dbReference type="EC" id="1.17.7.3" evidence="6"/>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX37648.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012206818.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_5019"/>
    <dbReference type="PRIDE" id="A9BMV3"/>
    <dbReference type="EnsemblBacteria" id="ABX37648">
        <property type="protein sequence ID" value="ABX37648"/>
        <property type="gene ID" value="Daci_5019"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_5019"/>
    <dbReference type="eggNOG" id="COG0821">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_042258_1_0_4"/>
    <dbReference type="OMA" id="PTCGRTQ"/>
    <dbReference type="UniPathway" id="UPA00056">
        <property type="reaction ID" value="UER00096"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051539">
        <property type="term" value="F:4 iron, 4 sulfur cluster binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046429">
        <property type="term" value="F:4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005506">
        <property type="term" value="F:iron ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0019288">
        <property type="term" value="P:isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniPathway"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016114">
        <property type="term" value="P:terpenoid biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.20.20.20">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.413.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00159">
        <property type="entry name" value="IspG"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011005">
        <property type="entry name" value="Dihydropteroate_synth-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016425">
        <property type="entry name" value="IspG_bac"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004588">
        <property type="entry name" value="IspG_bac-typ"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045854">
        <property type="entry name" value="NO2/SO3_Rdtase_4Fe4S_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30454">
        <property type="entry name" value="PTHR30454"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04551">
        <property type="entry name" value="GcpE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF004640">
        <property type="entry name" value="IspG"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00612">
        <property type="entry name" value="ispG_gcpE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="1 6" id="KW-0004">4Fe-4S</keyword>
    <keyword evidence="3 6" id="KW-0408">Iron</keyword>
    <keyword evidence="4 6" id="KW-0411">Iron-sulfur</keyword>
    <keyword evidence="5 6" id="KW-0414">Isoprene biosynthesis</keyword>
    <keyword evidence="6" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="2 6 7" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <feature type="binding site" evidence="6">
        <location>
            <position position="314"/>
        </location>
        <ligand>
            <name>[4Fe-4S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:49883"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <position position="317"/>
        </location>
        <ligand>
            <name>[4Fe-4S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:49883"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <position position="360"/>
        </location>
        <ligand>
            <name>[4Fe-4S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:49883"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <position position="367"/>
        </location>
        <ligand>
            <name>[4Fe-4S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:49883"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022485"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023002"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023004"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023014"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023229"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00159"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="ABX37648.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="427" mass="46045" checksum="F353E04AD87F5D4A" modified="2008-01-15" version="1">MQDLPITQQPIAIASPLPRKSRQARVVWRNNVVTVGGDAPVRVQSMTNTDTVDAVETAIQVRQLAQAGSEMVRITVNTPEAAAAVPYIREQLDRMGEYVPLVGDFHYNGHRLLTEYPACAEALSKYRINPGNVGKGDKKDKQFGQMIEAAARYDKAVRIGVNWGSLDQELMARLMDENSRRAQPWDTRQVMFEALISSAVDSARLAESMGLNGDNIILSCKVSGVQDLISVYRALAQRCDYALHLGLTEAGMGTKGTVASAAALSVLLQEGIGDTIRVSLTPQPGEARTQEVVVASEILQALGLRIFVPSVTACPGCGRTTSTTFQELAKQIDDYLRGQMPLWRMKYPGVEAMKVAVMGCIVNGPGESKHANIGISLPGTGEAPAAPVYIDGEKALTLRGERIAEEFQALVENYVARTYGATAAAPA</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="62" xmlns="http://uniprot.org/uniprot">
    <accession>A9BN69</accession>
    <name>A9BN69_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="4">RND efflux system, outer membrane lipoprotein, NodT family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ordered locus">Daci_5135</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="5" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="2">Cell membrane</location>
            <topology evidence="2">Lipid-anchor</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="1 2">Belongs to the outer membrane factor (OMF) (TC 1.B.17) family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX37764.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012206934.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_5135"/>
    <dbReference type="PRIDE" id="A9BN69"/>
    <dbReference type="EnsemblBacteria" id="ABX37764">
        <property type="protein sequence ID" value="ABX37764"/>
        <property type="gene ID" value="Daci_5135"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_5135"/>
    <dbReference type="eggNOG" id="COG1538">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_012817_13_1_4"/>
    <dbReference type="OMA" id="WSARSWG"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015562">
        <property type="term" value="F:efflux transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003423">
        <property type="entry name" value="OMP_efflux"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010131">
        <property type="entry name" value="RND_efflux_OM_lipoprot_NodT"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02321">
        <property type="entry name" value="OEP"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01845">
        <property type="entry name" value="outer_NodT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="2 4" id="KW-0449">Lipoprotein</keyword>
    <keyword evidence="2" id="KW-0472">Membrane</keyword>
    <keyword evidence="2" id="KW-0564">Palmitate</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0732">Signal</keyword>
    <keyword evidence="2" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="2" id="KW-1134">Transmembrane beta strand</keyword>
    <feature type="signal peptide" evidence="2">
        <location>
            <begin position="1"/>
            <end position="23"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5001436697" evidence="2">
        <location>
            <begin position="24"/>
            <end position="493"/>
        </location>
    </feature>
    <feature type="coiled-coil region" evidence="3">
        <location>
            <begin position="433"/>
            <end position="460"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00007613"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="RuleBase" id="RU362097"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="ABX37764.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="493" mass="51953" checksum="260740BA35AD8913" modified="2008-01-15" version="1">MKIPSLSKLSRRLLPLVAALALAGCASVSQSLPELPAAPAFKEQGAAPQAGWTQALPAEAQARGQWWLAFADPALDALVDKATLDNQSIQAAAARLAEARALARSANAERLPQLGLGAGATRGAGLDKASGTRPATLVNAGLNLSYEVDLFGRISQAADASRLDAEGREALLQSTRLAVQAEVAQTYLQLRALDAERALMRETVEAYRDTLRLSERRLQAGDIAELDVARIQAELSATESDALALDRQRAQVEHALAVLVGDSASRFGLGEGAWTTALPSIPAGVPATVLMRRPDISAAQRAVFAAQSRVGVAKTAWFPSISLTGAAGHASPEVGDLFKWSMRSWGVGALLSLPLFDGGRREAGVQAAGAQLDAALAAYRQQALVAFQEVEDQLSSIRILQEQSTVQGQAVVAAKRATSLSDTRYRNGYVSQLDLLDARRSELRNRRQALQVKSAQYQAAVGLIRALGGGWDVPADAPAGESANVPVAQAALR</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="83" xmlns="http://uniprot.org/uniprot">
    <accession>A9BNB0</accession>
    <name>A9BNB0_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="7">NADH-quinone oxidoreductase, E subunit</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ordered locus">Daci_5176</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="8" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="6">
            <name>2Fe-2S cluster</name>
            <dbReference type="ChEBI" id="CHEBI:49601"/>
        </cofactor>
        <text evidence="6">Binds 1 [2Fe-2S] cluster.</text>
    </comment>
    <comment type="similarity">
        <text evidence="1">Belongs to the complex I 24 kDa subunit family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX37805.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012206975.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_5176"/>
    <dbReference type="PRIDE" id="A9BNB0"/>
    <dbReference type="EnsemblBacteria" id="ABX37805">
        <property type="protein sequence ID" value="ABX37805"/>
        <property type="gene ID" value="Daci_5176"/>
    </dbReference>
    <dbReference type="GeneID" id="60689526"/>
    <dbReference type="KEGG" id="dac:Daci_5176"/>
    <dbReference type="eggNOG" id="COG1905">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_054362_2_0_4"/>
    <dbReference type="OMA" id="MYDTKPV"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051537">
        <property type="term" value="F:2 iron, 2 sulfur cluster binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016491">
        <property type="term" value="F:oxidoreductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd03064">
        <property type="entry name" value="TRX_Fd_NuoE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.1590">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002023">
        <property type="entry name" value="NuoE-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR042128">
        <property type="entry name" value="NuoE_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041921">
        <property type="entry name" value="NuoE_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036249">
        <property type="entry name" value="Thioredoxin-like_sf"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF000216">
        <property type="entry name" value="NADH_DH_24kDa"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52833">
        <property type="entry name" value="SSF52833"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01958">
        <property type="entry name" value="nuoE_fam"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2 6" id="KW-0001">2Fe-2S</keyword>
    <keyword evidence="4 6" id="KW-0408">Iron</keyword>
    <keyword evidence="5 6" id="KW-0411">Iron-sulfur</keyword>
    <keyword evidence="3 6" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <feature type="binding site" evidence="6">
        <location>
            <position position="82"/>
        </location>
        <ligand>
            <name>[2Fe-2S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:190135"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <position position="87"/>
        </location>
        <ligand>
            <name>[2Fe-2S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:190135"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <position position="123"/>
        </location>
        <ligand>
            <name>[2Fe-2S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:190135"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <position position="127"/>
        </location>
        <ligand>
            <name>[2Fe-2S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:190135"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00010643"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022714"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023004"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023014"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="PIRSR" id="PIRSR000216-1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="ABX37805.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="163" mass="18083" checksum="62331F8AAB4BE335" modified="2008-01-15" version="1">MITEATKERFAREVAKYPADQKQSAVMACLSIVQQEQGWVSAESEAVIAEFLGMAEIAVHEVTTFYNMYNQRPTGTYKLNVCTNLPCQLRDGYKALHHLESRLGIKMGETTPDGMFTLQQSECLGACADSPVMLVNDRCMCSFMSNEKLDELIDGLRAAEGKA</sequence>
</entry>
<entry dataset="Swiss-Prot" created="2008-12-16" modified="2022-05-25" version="72" xmlns="http://uniprot.org/uniprot">
    <accession>A9BNB2</accession>
    <name>NUOC_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">NADH-quinone oxidoreductase subunit C</fullName>
            <ecNumber evidence="1">7.1.1.-</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="1">NADH dehydrogenase I subunit C</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="1">NDH-1 subunit C</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="1" type="primary">nuoC</name>
        <name type="ordered locus">Daci_5178</name>
    </gene>
    <organism>
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference key="1">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain>DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="1">NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>a quinone + 5 H(+)(in) + NADH = a quinol + 4 H(+)(out) + NAD(+)</text>
            <dbReference type="Rhea" id="RHEA:57888"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:24646"/>
            <dbReference type="ChEBI" id="CHEBI:57540"/>
            <dbReference type="ChEBI" id="CHEBI:57945"/>
            <dbReference type="ChEBI" id="CHEBI:132124"/>
        </reaction>
    </comment>
    <comment type="subunit">
        <text evidence="1">NDH-1 is composed of 14 different subunits. Subunits NuoB, C, D, E, F, and G constitute the peripheral sector of the complex.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Cell inner membrane</location>
            <topology evidence="1">Peripheral membrane protein</topology>
            <orientation evidence="1">Cytoplasmic side</orientation>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="1">Belongs to the complex I 30 kDa subunit family.</text>
    </comment>
    <dbReference type="EC" id="7.1.1.-" evidence="1"/>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX37807.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A9BNB2"/>
    <dbReference type="SMR" id="A9BNB2"/>
    <dbReference type="STRING" id="398578.Daci_5178"/>
    <dbReference type="PRIDE" id="A9BNB2"/>
    <dbReference type="EnsemblBacteria" id="ABX37807">
        <property type="protein sequence ID" value="ABX37807"/>
        <property type="gene ID" value="Daci_5178"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_5178"/>
    <dbReference type="eggNOG" id="COG0852">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_042628_2_1_4"/>
    <dbReference type="OMA" id="MERETYD"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008137">
        <property type="term" value="F:NADH dehydrogenase (ubiquinone) activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0048038">
        <property type="term" value="F:quinone binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.460.80">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01357">
        <property type="entry name" value="NDH1_NuoC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010218">
        <property type="entry name" value="NADH_DH_suC"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037232">
        <property type="entry name" value="NADH_quin_OxRdtase_su_C/D-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001268">
        <property type="entry name" value="NADH_UbQ_OxRdtase_30kDa_su"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020396">
        <property type="entry name" value="NADH_UbQ_OxRdtase_CS"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00329">
        <property type="entry name" value="Complex1_30kDa"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF143243">
        <property type="entry name" value="SSF143243"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01961">
        <property type="entry name" value="NuoC_fam"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00542">
        <property type="entry name" value="COMPLEX1_30K"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword id="KW-0997">Cell inner membrane</keyword>
    <keyword id="KW-1003">Cell membrane</keyword>
    <keyword id="KW-0472">Membrane</keyword>
    <keyword id="KW-0520">NAD</keyword>
    <keyword id="KW-0874">Quinone</keyword>
    <keyword id="KW-1185">Reference proteome</keyword>
    <keyword id="KW-1278">Translocase</keyword>
    <keyword id="KW-0813">Transport</keyword>
    <keyword id="KW-0830">Ubiquinone</keyword>
    <feature type="chain" id="PRO_0000358092" description="NADH-quinone oxidoreductase subunit C">
        <location>
            <begin position="1"/>
            <end position="203"/>
        </location>
    </feature>
    <evidence type="ECO:0000255" key="1">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01357"/>
        </source>
    </evidence>
    <sequence length="203" mass="22853" checksum="FA60E034D15CD736" modified="2008-01-15" version="1">MMTAIAIHPEVLRDVVAAALGDKARSVTVALGEVTVEVSAAQYLEAMQVLHTAPDCRFEVLVDLCGVDYSTYAEVGREGPRFAVVSHLLSISLNQRLRVRVFCTDDDFPVVASVTSVWAGANWFEREAFDLFGIVFDGHDDLRRILTDYGFIGHPFRKDFPLSGHVEMRYDPEQQRVVYQPVTIEPREITPRIIREDNYGGLH</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="78" xmlns="http://uniprot.org/uniprot">
    <accession>A9BND5</accession>
    <name>A9BND5_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="7">tRNA-dihydrouridine(16) synthase</fullName>
            <ecNumber evidence="7">1.3.1.-</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="7">U16-specific dihydrouridine synthase</fullName>
            <shortName evidence="7">U16-specific Dus</shortName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="7">tRNA-dihydrouridine synthase C</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="7" type="primary">dusC</name>
        <name evidence="11" type="ordered locus">Daci_5201</name>
    </gene>
    <organism evidence="11 12">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="11 12" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="12">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="12" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="12">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="7">Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines. Specifically modifies U16 in tRNAs.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="7">
            <text>5,6-dihydrouridine(16) in tRNA + NAD(+) = H(+) + NADH + uridine(16) in tRNA</text>
            <dbReference type="Rhea" id="RHEA:53380"/>
            <dbReference type="Rhea" id="RHEA-COMP:13543"/>
            <dbReference type="Rhea" id="RHEA-COMP:13544"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:57540"/>
            <dbReference type="ChEBI" id="CHEBI:57945"/>
            <dbReference type="ChEBI" id="CHEBI:65315"/>
            <dbReference type="ChEBI" id="CHEBI:74443"/>
        </reaction>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="7">
            <text>5,6-dihydrouridine(16) in tRNA + NADP(+) = H(+) + NADPH + uridine(16) in tRNA</text>
            <dbReference type="Rhea" id="RHEA:53376"/>
            <dbReference type="Rhea" id="RHEA-COMP:13543"/>
            <dbReference type="Rhea" id="RHEA-COMP:13544"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:57783"/>
            <dbReference type="ChEBI" id="CHEBI:58349"/>
            <dbReference type="ChEBI" id="CHEBI:65315"/>
            <dbReference type="ChEBI" id="CHEBI:74443"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="1 7 8">
            <name>FMN</name>
            <dbReference type="ChEBI" id="CHEBI:58210"/>
        </cofactor>
    </comment>
    <comment type="similarity">
        <text evidence="7">Belongs to the Dus family. DusC subfamily.</text>
    </comment>
    <comment type="similarity">
        <text evidence="8">Belongs to the dus family.</text>
    </comment>
    <comment type="caution">
        <text evidence="7">Lacks conserved residue(s) required for the propagation of feature annotation.</text>
    </comment>
    <dbReference type="EC" id="1.3.1.-" evidence="7"/>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX37830.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012207000.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_5201"/>
    <dbReference type="PRIDE" id="A9BND5"/>
    <dbReference type="EnsemblBacteria" id="ABX37830">
        <property type="protein sequence ID" value="ABX37830"/>
        <property type="gene ID" value="Daci_5201"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_5201"/>
    <dbReference type="eggNOG" id="COG0042">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_013299_0_4_4"/>
    <dbReference type="OMA" id="YRPPAHW"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0050660">
        <property type="term" value="F:flavin adenine dinucleotide binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0010181">
        <property type="term" value="F:FMN binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000049">
        <property type="term" value="F:tRNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0017150">
        <property type="term" value="F:tRNA dihydrouridine synthase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd02801">
        <property type="entry name" value="DUS_like_FMN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.225.30">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.20.20.70">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_02043">
        <property type="entry name" value="DusC_subfam"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013785">
        <property type="entry name" value="Aldolase_TIM"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035587">
        <property type="entry name" value="DUS-like_FMN-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001269">
        <property type="entry name" value="DUS_fam"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR032886">
        <property type="entry name" value="DusC"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR042270">
        <property type="entry name" value="DusC_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018517">
        <property type="entry name" value="tRNA_hU_synthase_CS"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11082:SF26">
        <property type="entry name" value="PTHR11082:SF26"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01207">
        <property type="entry name" value="Dus"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF006621">
        <property type="entry name" value="Dus"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01136">
        <property type="entry name" value="UPF0034"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2 7 8" id="KW-0285">Flavoprotein</keyword>
    <keyword evidence="3 7 8" id="KW-0288">FMN</keyword>
    <keyword evidence="7" id="KW-0521">NADP</keyword>
    <keyword evidence="6 7 8" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="12" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="5 7" id="KW-0694">RNA-binding</keyword>
    <keyword evidence="4 7 8" id="KW-0819">tRNA processing</keyword>
    <keyword evidence="7" id="KW-0820">tRNA-binding</keyword>
    <feature type="domain" description="Dus" evidence="10">
        <location>
            <begin position="5"/>
            <end position="310"/>
        </location>
    </feature>
    <feature type="active site" description="Proton donor" evidence="7 9">
        <location>
            <position position="98"/>
        </location>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <position position="68"/>
        </location>
        <ligand>
            <name>FMN</name>
            <dbReference type="ChEBI" id="CHEBI:58210"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <position position="139"/>
        </location>
        <ligand>
            <name>FMN</name>
            <dbReference type="ChEBI" id="CHEBI:58210"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <begin position="199"/>
            <end position="201"/>
        </location>
        <ligand>
            <name>FMN</name>
            <dbReference type="ChEBI" id="CHEBI:58210"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <begin position="223"/>
            <end position="224"/>
        </location>
        <ligand>
            <name>FMN</name>
            <dbReference type="ChEBI" id="CHEBI:58210"/>
        </ligand>
    </feature>
    <feature type="site" description="Interacts with tRNA; defines subfamily-specific binding signature" evidence="7">
        <location>
            <position position="35"/>
        </location>
    </feature>
    <feature type="site" description="Interacts with tRNA" evidence="7">
        <location>
            <position position="95"/>
        </location>
    </feature>
    <feature type="site" description="Interacts with tRNA" evidence="7">
        <location>
            <position position="176"/>
        </location>
    </feature>
    <feature type="site" description="Interacts with tRNA; defines subfamily-specific binding signature" evidence="7">
        <location>
            <position position="282"/>
        </location>
    </feature>
    <feature type="site" description="Interacts with tRNA; defines subfamily-specific binding signature" evidence="7">
        <location>
            <position position="284"/>
        </location>
    </feature>
    <feature type="site" description="Interacts with tRNA; defines subfamily-specific binding signature" evidence="7">
        <location>
            <position position="305"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001917"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022630"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022643"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022694"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022884"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023002"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_02043"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="PIRNR" id="PIRNR006621"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="PIRSR" id="PIRSR006621-1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="10">
        <source>
            <dbReference type="Pfam" id="PF01207"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="EMBL" id="ABX37830.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="329" mass="36024" checksum="2D87C9B56C62816E" modified="2008-01-15" version="1">MRLLLAPMEGLLDFVLRDVLTRVGGADRCVSEFIRVTGTVLPDKVFLRTMPELNNGSRTLAGVPVRAQLLGSDPDSMAANAANLARLGPEGIDLNFGCPAKVVNRHGGGAALLQDPEQIARVVGAVRAAVPAAMPVSAKMRLGFNDTTLMTECAQAMQAGGACEIVVHARTKLDGYRPPAYWDMIPRIRESVTVPVVANGEIWTVEDALRCREQSGCGDLMLGRGIVADPGLALAIRAAVEGGQMPAEHVAAQVSWSDLVPQVQRFWDMVCEDLEPRQRAGRLKQWLNLLRRRFPEAEQAYQEVRTQTDQREITLWVQALARRQEWVGL</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="43" xmlns="http://uniprot.org/uniprot">
    <accession>A9BNE6</accession>
    <name>A9BNE6_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Daci_5212</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="2" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX37841.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012207011.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_5212"/>
    <dbReference type="PRIDE" id="A9BNE6"/>
    <dbReference type="EnsemblBacteria" id="ABX37841">
        <property type="protein sequence ID" value="ABX37841"/>
        <property type="gene ID" value="Daci_5212"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_5212"/>
    <dbReference type="eggNOG" id="ENOG5032ZWF">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_157331_0_0_4"/>
    <dbReference type="OMA" id="RYELCED"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ABX37841.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="114" mass="12072" checksum="0D9B819C0BF4C49E" modified="2008-01-15" version="1">MDETSQIQPPPSFAALYADRHGRLKASIADVVGRYELCEDLASHLVEQAQTLYHSGNSSEQGVLLGMHAGLAAEGSIVSPGEARWIVQRLAELLEWQAPLLPDASPPPGADGAA</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="73" xmlns="http://uniprot.org/uniprot">
    <accession>A9BNK5</accession>
    <name>A9BNK5_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="3 5">Malonyl CoA-acyl carrier protein transacylase</fullName>
            <ecNumber evidence="2 5">2.3.1.39</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="8" type="ordered locus">Daci_5271</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="9" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="1 5">
            <text>holo-[ACP] + malonyl-CoA = CoA + malonyl-[ACP]</text>
            <dbReference type="Rhea" id="RHEA:41792"/>
            <dbReference type="Rhea" id="RHEA-COMP:9623"/>
            <dbReference type="Rhea" id="RHEA-COMP:9685"/>
            <dbReference type="ChEBI" id="CHEBI:57287"/>
            <dbReference type="ChEBI" id="CHEBI:57384"/>
            <dbReference type="ChEBI" id="CHEBI:64479"/>
            <dbReference type="ChEBI" id="CHEBI:78449"/>
            <dbReference type="EC" id="2.3.1.39"/>
        </reaction>
    </comment>
    <comment type="similarity">
        <text evidence="5">Belongs to the fabD family.</text>
    </comment>
    <dbReference type="EC" id="2.3.1.39" evidence="2 5"/>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX37900.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_5271"/>
    <dbReference type="PRIDE" id="A9BNK5"/>
    <dbReference type="EnsemblBacteria" id="ABX37900">
        <property type="protein sequence ID" value="ABX37900"/>
        <property type="gene ID" value="Daci_5271"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_5271"/>
    <dbReference type="eggNOG" id="COG0331">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_030558_0_1_4"/>
    <dbReference type="OMA" id="AANYNCP"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004314">
        <property type="term" value="F:[acyl-carrier-protein] S-malonyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.366.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001227">
        <property type="entry name" value="Ac_transferase_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014043">
        <property type="entry name" value="Acyl_transferase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016035">
        <property type="entry name" value="Acyl_Trfase/lysoPLipase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR024925">
        <property type="entry name" value="Malonyl_CoA-ACP_transAc"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004410">
        <property type="entry name" value="Malonyl_CoA-ACP_transAc_FabD"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016036">
        <property type="entry name" value="Malonyl_transacylase_ACP-bd"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00698">
        <property type="entry name" value="Acyl_transf_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF000446">
        <property type="entry name" value="Mct"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00827">
        <property type="entry name" value="PKS_AT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52151">
        <property type="entry name" value="SSF52151"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55048">
        <property type="entry name" value="SSF55048"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00128">
        <property type="entry name" value="fabD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-0012">Acyltransferase</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4 5" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="PKS_AT" evidence="7">
        <location>
            <begin position="26"/>
            <end position="328"/>
        </location>
    </feature>
    <feature type="active site" evidence="6">
        <location>
            <position position="110"/>
        </location>
    </feature>
    <feature type="active site" evidence="6">
        <location>
            <position position="223"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00000936"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00013258"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00018953"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="PIRNR" id="PIRNR000446"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="PIRSR" id="PIRSR000446-1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="SMART" id="SM00827"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="ABX37900.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="333" mass="34104" checksum="3920F29AE0F9006E" modified="2008-01-15" version="1">MRDACLSAGSHGAAFIFENMKKFAFVFPGQGSQSVGMLDGWGDHPVVAQTLAEASEALGENIGQLIQQGPKEALALTTNTQPVMLVAGVAAWRVWQAEGGALPDAVAGHSLGEYSALVASGVLTLSQAAPLVRLRAAAMQEAVPVGTGAMAAILGLDADKVRAGCAEVTAALGGAEVVEAVNFNDPSQTVIAGSKAAVEKACEALKAAGAKRALPLPVSAPFHSSLMKPAAEKLKAALAATALAAPQIPVLNNIDVAVEQDADAIRDALYRQAFGPVRWVECVQAMKARGIVHLVECGPGKVLMGLTKRIDADLTAAALYDPATLADVKESLA</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-01-19" version="51" xmlns="http://uniprot.org/uniprot">
    <accession>A9BNT1</accession>
    <name>A9BNT1_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_5347</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX37976.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012207145.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_5347"/>
    <dbReference type="EnsemblBacteria" id="ABX37976">
        <property type="protein sequence ID" value="ABX37976"/>
        <property type="gene ID" value="Daci_5347"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_5347"/>
    <dbReference type="eggNOG" id="COG2314">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_119469_0_0_4"/>
    <dbReference type="OMA" id="PTRSGWP"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="50"/>
            <end position="66"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="78"/>
            <end position="99"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="130"/>
            <end position="152"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX37976.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="168" mass="18487" checksum="9FAD087BF1579F3D" modified="2008-01-15" version="1">MNRPSTPLPQPAQAQQGAARSKSKTLTTWLAFVGGPLGLHRFYLHGFGDWLGWLLPVPTALGVYGIERVQQLGQDDQLSWLLIPLLGFTIAGCALRAILYGLTDTEAWNRRHNPGIDVQAQAGRTGWSTIFAIALSLMLGAAVLMASIAYSFQHYFEHQVEEARKISQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="72" xmlns="http://uniprot.org/uniprot">
    <accession>A9BNV9</accession>
    <name>A9BNV9_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="6">Acyl-CoA dehydrogenase domain protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ordered locus">Daci_5375</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="7" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>FAD</name>
            <dbReference type="ChEBI" id="CHEBI:57692"/>
        </cofactor>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the acyl-CoA dehydrogenase family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX38004.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012207173.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_5375"/>
    <dbReference type="PRIDE" id="A9BNV9"/>
    <dbReference type="EnsemblBacteria" id="ABX38004">
        <property type="protein sequence ID" value="ABX38004"/>
        <property type="gene ID" value="Daci_5375"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_5375"/>
    <dbReference type="eggNOG" id="COG1960">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_018204_5_2_4"/>
    <dbReference type="OMA" id="MRFVGQQ"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0050660">
        <property type="term" value="F:flavin adenine dinucleotide binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016627">
        <property type="term" value="F:oxidoreductase activity, acting on the CH-CH group of donors"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.540.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.110.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR046373">
        <property type="entry name" value="Acyl-CoA_Oxase/DH_mid-dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036250">
        <property type="entry name" value="AcylCo_DH-like_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009075">
        <property type="entry name" value="AcylCo_DH/oxidase_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013786">
        <property type="entry name" value="AcylCoA_DH/ox_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037069">
        <property type="entry name" value="AcylCoA_DH/ox_N_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009100">
        <property type="entry name" value="AcylCoA_DH/oxidase_NM_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00441">
        <property type="entry name" value="Acyl-CoA_dh_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02771">
        <property type="entry name" value="Acyl-CoA_dh_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47203">
        <property type="entry name" value="SSF47203"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56645">
        <property type="entry name" value="SSF56645"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-0274">FAD</keyword>
    <keyword evidence="3" id="KW-0285">Flavoprotein</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Acyl-CoA_dh_N" evidence="5">
        <location>
            <begin position="6"/>
            <end position="116"/>
        </location>
    </feature>
    <feature type="domain" description="Acyl-CoA_dh_1" evidence="4">
        <location>
            <begin position="225"/>
            <end position="362"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001974"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00009347"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022827"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="Pfam" id="PF00441"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="Pfam" id="PF02771"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="ABX38004.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="371" mass="39697" checksum="557136E87364F820" modified="2008-01-15" version="1">MDFDFSDDQQQLRDAVRRWVDKGYTFERRRSIVEAGGFSREVWGELAELGLTALTVPEEHGGLGLGATDVMVVMEELGRGLVMEPLAQAFVAAGVLGKHADASVAGQWLPRVASGEALVVLAHQERQARYRLDVCAAKASKSGSGYTVDATKSVVPAGDAADAFLVPAQLDGKIALFLVERGASGVSTQGYRTQDGSRAAELRCQAAPATLVTADGLAALTLAQDAANAALCAEGVGAMEQTLKLTTEYMNQRKQFNTVIASFQALRHRVADMKMQLELARSMSYYASLKMSAADAERHVAIARAKVQLGQSLRFVGQQSVQLHGGIGVTDEYAGSHYFKRLTQMEMTGGDTLHHLGIVSAKMQDTAGVFA</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="69" xmlns="http://uniprot.org/uniprot">
    <accession>A9BNW5</accession>
    <name>A9BNW5_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Methyltransferase type 11</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Daci_5381</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="4" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX38010.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012207179.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_5381"/>
    <dbReference type="PRIDE" id="A9BNW5"/>
    <dbReference type="EnsemblBacteria" id="ABX38010">
        <property type="protein sequence ID" value="ABX38010"/>
        <property type="gene ID" value="Daci_5381"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_5381"/>
    <dbReference type="eggNOG" id="COG0457">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="eggNOG" id="COG4976">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_034833_1_0_4"/>
    <dbReference type="OMA" id="SADTLCY"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008168">
        <property type="term" value="F:methyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0032259">
        <property type="term" value="P:methylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.25.40.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.150">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025714">
        <property type="entry name" value="Methyltranfer_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029063">
        <property type="entry name" value="SAM-dependent_MTases_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011990">
        <property type="entry name" value="TPR-like_helical_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019734">
        <property type="entry name" value="TPR_repeat"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13847">
        <property type="entry name" value="Methyltransf_31"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00028">
        <property type="entry name" value="TPR"/>
        <property type="match status" value="5"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48452">
        <property type="entry name" value="SSF48452"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53335">
        <property type="entry name" value="SSF53335"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50005">
        <property type="entry name" value="TPR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-0489">Methyltransferase</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0802">TPR repeat</keyword>
    <keyword evidence="3" id="KW-0808">Transferase</keyword>
    <feature type="repeat" description="TPR" evidence="1">
        <location>
            <begin position="45"/>
            <end position="78"/>
        </location>
    </feature>
    <feature type="domain" description="Methyltranfer_dom" evidence="2">
        <location>
            <begin position="274"/>
            <end position="374"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00339"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF13847"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ABX38010.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="438" mass="48292" checksum="41A3CFDB2715101E" modified="2008-01-15" version="1">MSATSIPADINRKHLEMARQQISNGDLQKAALTLNKAHRKMPGDARVFMLAGLMAEKAGNLTKAEEAFDRCVELAPMWGPGLLETALYRARRDQFDLAIEMAEKVARIEPRNPQVLAGVVDIAHRAGNHEMAVLHLRRGLELFPNDAMLRQHLAADLGELGEHTEALQIWNALVDEFPEQPVYKMGRIKVQIARGEPVAALDDIRTLEEKFPQDATLAYYAALARAETPQHIPVGMHQAMFDEMAERFDRHLVLGLNYQLPKIVAGQLIARHPEKDFNLLDLGCGTGLLGLFLGPMQGYLIGVDSSLKMIEEAAKHGVYDRFHNVDLLGALQNTPANEYDVLTLLDVLIYIGAPQLVIPNAARILKTGGELIFSCETAPEDGPDLVLQPSQRYAHKRSHIEALCKQAGFSVSTEELVLRQEGGEPVQGFVVTATKTAA</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="85" xmlns="http://uniprot.org/uniprot">
    <accession>A9BP23</accession>
    <name>A9BP23_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="9">Oligopeptide/dipeptide ABC transporter, ATPase subunit</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="9" type="ordered locus">Daci_5439</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="9 10" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="10" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX38068.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012207237.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_5439"/>
    <dbReference type="PRIDE" id="A9BP23"/>
    <dbReference type="EnsemblBacteria" id="ABX38068">
        <property type="protein sequence ID" value="ABX38068"/>
        <property type="gene ID" value="Daci_5439"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_5439"/>
    <dbReference type="eggNOG" id="COG0444">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_000604_1_23_4"/>
    <dbReference type="OMA" id="QMTEVII"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015833">
        <property type="term" value="P:peptide transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003593">
        <property type="entry name" value="AAA+_ATPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003439">
        <property type="entry name" value="ABC_transporter-like_ATP-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017871">
        <property type="entry name" value="ABC_transporter-like_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013563">
        <property type="entry name" value="Oligopep_ABC_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00005">
        <property type="entry name" value="ABC_tran"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08352">
        <property type="entry name" value="oligo_HPY"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00382">
        <property type="entry name" value="AAA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01727">
        <property type="entry name" value="oligo_HPY"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00211">
        <property type="entry name" value="ABC_TRANSPORTER_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50893">
        <property type="entry name" value="ABC_TRANSPORTER_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4 7" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="2" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="6" id="KW-0472">Membrane</keyword>
    <keyword evidence="3 7" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="5" id="KW-1278">Translocase</keyword>
    <keyword evidence="1" id="KW-0813">Transport</keyword>
    <feature type="domain" description="ABC transporter" evidence="8">
        <location>
            <begin position="4"/>
            <end position="253"/>
        </location>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <begin position="40"/>
            <end position="47"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022448"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022967"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00434"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="PROSITE" id="PS50893"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="ABX38068.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="350" mass="37769" checksum="023AE9EF880B513A" modified="2008-01-15" version="1">MPLLEVSGLTITLQTPRGRARAVQNLEFILERGATLGLIGESGCGKSLTALALMGLLPEHAQVDGSIQLNGKELLDMDENALCRLRGNRMAMVFQEPMTALNPVHGIGRQVAEPLRHHLRLGRQAARAHAVALLERVGIARAAQRYDDYPHQFSGGQRQRITIAMALACGPDLLIADEPTTALDVTVQQQILDLLQELVAEHSMALLLISHDLGVIAQNVEQLLVMYGGSVVESGMTEAIFARRAHPYTRGLFAARPQLDLSAPGSLPPARLPTIAGTVPELVDLPAGCAFAGRCSFTEPACHSERPRPVVLERLQRPTPASLQAWAQPHVVRCLRPEAIAQGLPAQECA</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="55" xmlns="http://uniprot.org/uniprot">
    <accession>A9BPE4</accession>
    <name>A9BPE4_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="4">RND efflux system, outer membrane lipoprotein, NodT family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ordered locus">Daci_0165</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="5" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="2">Cell membrane</location>
            <topology evidence="2">Lipid-anchor</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="1 2">Belongs to the outer membrane factor (OMF) (TC 1.B.17) family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX32811.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012202104.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_0165"/>
    <dbReference type="PRIDE" id="A9BPE4"/>
    <dbReference type="EnsemblBacteria" id="ABX32811">
        <property type="protein sequence ID" value="ABX32811"/>
        <property type="gene ID" value="Daci_0165"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_0165"/>
    <dbReference type="eggNOG" id="COG1538">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_012817_13_0_4"/>
    <dbReference type="OMA" id="ITWAAFD"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015562">
        <property type="term" value="F:efflux transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003423">
        <property type="entry name" value="OMP_efflux"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010131">
        <property type="entry name" value="RND_efflux_OM_lipoprot_NodT"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02321">
        <property type="entry name" value="OEP"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01845">
        <property type="entry name" value="outer_NodT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="2 4" id="KW-0449">Lipoprotein</keyword>
    <keyword evidence="2" id="KW-0472">Membrane</keyword>
    <keyword evidence="2" id="KW-0564">Palmitate</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="2" id="KW-1134">Transmembrane beta strand</keyword>
    <feature type="coiled-coil region" evidence="3">
        <location>
            <begin position="186"/>
            <end position="244"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00007613"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="RuleBase" id="RU362097"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="ABX32811.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="477" mass="50761" checksum="C8C374C9A6A55C76" modified="2008-01-15" version="1">MPEIRKSLSRHALALASAALVGGCAVGPDFKAPAAPRAAAQFARAEPAPATPQAEPDAAFWRQFQDPQLTQLVERALGDNQDLQVALARLDGAQALLRESRFDQLPTVTMSGRATQQKLSESEAFYGPRSQRSYTAGLAASWEIDVFGRVRRSIEARHADLRADAADLAALQVAIAAQVAGSYADLRGWQQRLALAQANAANQQDTLRLVQLRLAHGSGTEFDLARAQAQLEATRSRIPALQAQIAMAQHRLAVLTGQVPEALIAVLDVPAALPQLPPAIDPGTPAGLLRRRPDVAVAEARLHAATARIGVATADLFPRLSLGGLLGSTALHGGSLFEGASARSSVFLGVDWSFLDVGRVRARIAASEAGAQAALAQYQQTVLLALEDTENALVRLQRTRSEDAHLAQAAEQRQRAEQLAQRRYQLGSVGLYEVLDAQRDLYAAQDAAADSRARGLRAAVALYQALAGGWDGKLPPA</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-05-25" version="53" xmlns="http://uniprot.org/uniprot">
    <accession>A9BPN3</accession>
    <name>A9BPN3_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="9">Rod shape-determining protein MreD</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="9" type="ordered locus">Daci_0356</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="9 10" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="10" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the MreD family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX33002.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012202295.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_0356"/>
    <dbReference type="EnsemblBacteria" id="ABX33002">
        <property type="protein sequence ID" value="ABX33002"/>
        <property type="gene ID" value="Daci_0356"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_0356"/>
    <dbReference type="eggNOG" id="COG2891">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_119315_1_0_4"/>
    <dbReference type="OMA" id="ISWHRRI"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008360">
        <property type="term" value="P:regulation of cell shape"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007227">
        <property type="entry name" value="Cell_shape_determining_MreD"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR026034">
        <property type="entry name" value="MreD_proteobac"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37484">
        <property type="entry name" value="PTHR37484"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04093">
        <property type="entry name" value="MreD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF018472">
        <property type="entry name" value="MreD_proteobac"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR03426">
        <property type="entry name" value="shape_MreD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="5" id="KW-0133">Cell shape</keyword>
    <keyword evidence="7 8" id="KW-0472">Membrane</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4 8" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="6 8" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="12"/>
            <end position="31"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="43"/>
            <end position="66"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="78"/>
            <end position="96"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="108"/>
            <end position="125"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="137"/>
            <end position="158"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00007776"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022960"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="ABX33002.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="172" mass="18641" checksum="D25E64E6CF57B871" modified="2008-01-15" version="1">MIMPRGQQLLLPVNPLFIVVSLLAALALNMLPLGRQAWQPDLLMVLLAFWALNQPQRVGMGVAFLLGLCMDVDRSSLLGQHALAYALLVFAAGAMGRRLSWFSTPVQALHLLPLFAVVHGLQVLLRMLAGGIVPGPLVVVAPLIEALLWPLVSGLLLAPQRRPPDSDENRPL</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2021-06-02" version="47" xmlns="http://uniprot.org/uniprot">
    <accession>A9BPW4</accession>
    <name>A9BPW4_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Conjugal transfer protein TrbC</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_0437</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX33083.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012202373.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_0437"/>
    <dbReference type="EnsemblBacteria" id="ABX33083">
        <property type="protein sequence ID" value="ABX33083"/>
        <property type="gene ID" value="Daci_0437"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_0437"/>
    <dbReference type="eggNOG" id="COG3838">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_143299_2_0_4"/>
    <dbReference type="OMA" id="WEGPLTS"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007039">
        <property type="entry name" value="TrbC/VirB2"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04956">
        <property type="entry name" value="TrbC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="72"/>
            <end position="89"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="101"/>
            <end position="121"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX33083.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="127" mass="13159" checksum="9189F0100C555867" modified="2008-01-15" version="1">MTQMTIPAFRFSANPALRLARLRCLARPAGQGLLLAALLLFLAGAAQAAGSSMPWEGPLQSILESIQGPVARIVAVIIIIATGLALAFGDTSGGFRKLIQIVFGLSIAFAASSFFLSFFSFSGGAVV</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-01-19" version="48" xmlns="http://uniprot.org/uniprot">
    <accession>A9BPX0</accession>
    <name>A9BPX0_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Daci_0443</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="2" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX33089.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_0443"/>
    <dbReference type="EnsemblBacteria" id="ABX33089">
        <property type="protein sequence ID" value="ABX33089"/>
        <property type="gene ID" value="Daci_0443"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_0443"/>
    <dbReference type="eggNOG" id="ENOG5032SV0">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_185099_0_0_4"/>
    <dbReference type="OMA" id="DGQKIMM"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.10.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR021604">
        <property type="entry name" value="CopK"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038644">
        <property type="entry name" value="CopK_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF11525">
        <property type="entry name" value="CopK"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ABX33089.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="79" mass="8252" checksum="7387720602FE4636" modified="2008-01-15" version="1">MPAFAGHAAAQAAKEMVPLADGGTLYVFKDGKMAQESRFGRAVYQSIGASVATKDGRNIAITSNEVARLSSLLEQEHGG</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="64" xmlns="http://uniprot.org/uniprot">
    <accession>A9BPZ9</accession>
    <name>A9BPZ9_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Enoyl-CoA hydratase/isomerase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Daci_0568</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="4" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1 2">Belongs to the enoyl-CoA hydratase/isomerase family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX33214.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012202500.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_0568"/>
    <dbReference type="PRIDE" id="A9BPZ9"/>
    <dbReference type="EnsemblBacteria" id="ABX33214">
        <property type="protein sequence ID" value="ABX33214"/>
        <property type="gene ID" value="Daci_0568"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_0568"/>
    <dbReference type="eggNOG" id="COG1024">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_009834_7_2_4"/>
    <dbReference type="OMA" id="DPDLHWK"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016853">
        <property type="term" value="F:isomerase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.12.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029045">
        <property type="entry name" value="ClpP/crotonase-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018376">
        <property type="entry name" value="Enoyl-CoA_hyd/isom_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001753">
        <property type="entry name" value="Enoyl-CoA_hydra/iso"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014748">
        <property type="entry name" value="Enoyl-CoA_hydra_C"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00378">
        <property type="entry name" value="ECH_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52096">
        <property type="entry name" value="SSF52096"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00166">
        <property type="entry name" value="ENOYL_COA_HYDRATASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-0413">Isomerase</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00005254"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="RuleBase" id="RU003707"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ABX33214.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="260" mass="27580" checksum="9A3F89B8BB80E718" modified="2008-01-15" version="1">MPPSLVLVEQQDAVRTLVLNRPDALNSFNAQLHEQLLSALEQAAGDATVRCVVLTGAGRGFCAGQDLSDPEAAPDQNLGDLIERRYQPLCLRLKSMPVPVVAAVNGVAAGAGANIALACDLVLAARSASFIQAFAKIGLVPDCGGTWLLPRLVGRARALGLALLGDKLPAAEAERIGLIWRCVEDADLRSEAQALAQRLAAMPVRALARTREAMDSAQLLDYEHALTREARQQGQLGAAHDYQEGVAAFLGKRAAVFSDR</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="62" xmlns="http://uniprot.org/uniprot">
    <accession>A9BQ10</accession>
    <name>A9BQ10_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Monooxygenase FAD-binding</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_0579</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX33225.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012202511.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_0579"/>
    <dbReference type="PRIDE" id="A9BQ10"/>
    <dbReference type="EnsemblBacteria" id="ABX33225">
        <property type="protein sequence ID" value="ABX33225"/>
        <property type="gene ID" value="Daci_0579"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_0579"/>
    <dbReference type="eggNOG" id="COG0654">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_009665_20_2_4"/>
    <dbReference type="OMA" id="FHSDERQ"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0071949">
        <property type="term" value="F:FAD binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004497">
        <property type="term" value="F:monooxygenase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.50.50.60">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002938">
        <property type="entry name" value="FAD-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036188">
        <property type="entry name" value="FAD/NAD-bd_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01494">
        <property type="entry name" value="FAD_binding_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51905">
        <property type="entry name" value="SSF51905"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0503">Monooxygenase</keyword>
    <keyword evidence="2" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="FAD_binding_3" evidence="1">
        <location>
            <begin position="42"/>
            <end position="380"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF01494"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX33225.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="558" mass="61691" checksum="28D2227ECB8AEC00" modified="2008-01-15" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="74" xmlns="http://uniprot.org/uniprot">
    <accession>A9BQ76</accession>
    <name>A9BQ76_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="5">Flagellar motor switch protein FliM</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="13" type="ordered locus">Daci_0645</name>
    </gene>
    <organism evidence="13 14">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="13 14" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="14">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="14" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="14">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="11">FliM is one of three proteins (FliG, FliN, FliM) that forms the rotor-mounted switch complex (C ring), located at the base of the basal body. This complex interacts with the CheY and CheZ chemotaxis proteins, in addition to contacting components of the motor that determine the direction of flagellar rotation.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Bacterial flagellum basal body</location>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="3">Cell inner membrane</location>
            <topology evidence="3">Peripheral membrane protein</topology>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="2">Membrane</location>
            <topology evidence="2">Peripheral membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="4">Belongs to the FliM family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX33291.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012202577.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_0645"/>
    <dbReference type="PRIDE" id="A9BQ76"/>
    <dbReference type="EnsemblBacteria" id="ABX33291">
        <property type="protein sequence ID" value="ABX33291"/>
        <property type="gene ID" value="Daci_0645"/>
    </dbReference>
    <dbReference type="GeneID" id="60690986"/>
    <dbReference type="KEGG" id="dac:Daci_0645"/>
    <dbReference type="eggNOG" id="COG1868">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_052646_1_2_4"/>
    <dbReference type="OMA" id="NPQFTQI"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009425">
        <property type="term" value="C:bacterial-type flagellum basal body"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003774">
        <property type="term" value="F:cytoskeletal motor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0071973">
        <property type="term" value="P:bacterial-type flagellum-dependent cell motility"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006935">
        <property type="term" value="P:chemotaxis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd17908">
        <property type="entry name" value="FliM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.30.330.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.1550.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR028976">
        <property type="entry name" value="CheC-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001689">
        <property type="entry name" value="Flag_FliM"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001543">
        <property type="entry name" value="FliN-like_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036429">
        <property type="entry name" value="SpoA-like_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02154">
        <property type="entry name" value="FliM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01052">
        <property type="entry name" value="FliMN_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF002888">
        <property type="entry name" value="FliM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00955">
        <property type="entry name" value="FLGMOTORFLIM"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF101801">
        <property type="entry name" value="SSF101801"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF103039">
        <property type="entry name" value="SSF103039"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01397">
        <property type="entry name" value="fliM_switch"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="10" id="KW-0975">Bacterial flagellum</keyword>
    <keyword evidence="6" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="13" id="KW-0966">Cell projection</keyword>
    <keyword evidence="7" id="KW-0145">Chemotaxis</keyword>
    <keyword evidence="13" id="KW-0969">Cilium</keyword>
    <keyword evidence="8" id="KW-0283">Flagellar rotation</keyword>
    <keyword evidence="13" id="KW-0282">Flagellum</keyword>
    <keyword evidence="9" id="KW-0472">Membrane</keyword>
    <keyword evidence="14" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="FliMN_C" evidence="12">
        <location>
            <begin position="252"/>
            <end position="319"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004117"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00004170"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00004417"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00011049"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00021898"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022500"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00022779"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00023143"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="ARBA" id="ARBA00025044"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="12">
        <source>
            <dbReference type="Pfam" id="PF01052"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="13">
        <source>
            <dbReference type="EMBL" id="ABX33291.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="14">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="334" mass="37469" checksum="72E4F0BCA56DB54B" modified="2008-01-15" version="1">MSDSFLSQEEVDALLEGVTGESQKSTTEEVEAGIIRQYDISSQERIVRGRMPTMEIVNERFARNFRIGLFNFIRRSPEVSVGTVSVQRYSAFLRELVVPTNFNIVAIRPLRGSGLVVCDPSLVFGVIDTLYGGTGRLQTRIEGRDFSHTEQRVINRLVNVICEEYKKAWHGIYPLELGYQRSEMQPQFANIATPSEIVVSTAFQLEIGDISGSIHICMPYATLEPIRDVLYSSTQGDSIEVDRRWVKVLKREIQAAEVTLVAELARADATVEQLLAMRPGDFIELDREPLIRASIGGVPIFECQYGTHNDKYAIRVENCLRGADAGWMGENNGN</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="66" xmlns="http://uniprot.org/uniprot">
    <accession>A9BQ96</accession>
    <name>A9BQ96_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="10">Peptidase M48 Ste24p</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="10" type="ordered locus">Daci_0860</name>
    </gene>
    <organism evidence="10 11">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="10 11" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="11">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="11" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="11">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </cofactor>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX33506.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012202792.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_0860"/>
    <dbReference type="PRIDE" id="A9BQ96"/>
    <dbReference type="EnsemblBacteria" id="ABX33506">
        <property type="protein sequence ID" value="ABX33506"/>
        <property type="gene ID" value="Daci_0860"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_0860"/>
    <dbReference type="eggNOG" id="COG4783">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_030556_1_0_4"/>
    <dbReference type="OMA" id="LNFSRDM"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004222">
        <property type="term" value="F:metalloendopeptidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006508">
        <property type="term" value="P:proteolysis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001915">
        <property type="entry name" value="Peptidase_M48"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01435">
        <property type="entry name" value="Peptidase_M48"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="3" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="6" id="KW-0482">Metalloprotease</keyword>
    <keyword evidence="2" id="KW-0645">Protease</keyword>
    <keyword evidence="11" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="8" id="KW-0732">Signal</keyword>
    <keyword evidence="5" id="KW-0862">Zinc</keyword>
    <feature type="signal peptide" evidence="8">
        <location>
            <begin position="1"/>
            <end position="31"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5002735677" evidence="8">
        <location>
            <begin position="32"/>
            <end position="541"/>
        </location>
    </feature>
    <feature type="domain" description="Peptidase_M48" evidence="9">
        <location>
            <begin position="107"/>
            <end position="267"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="7">
        <location>
            <begin position="395"/>
            <end position="414"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="7">
        <location>
            <begin position="400"/>
            <end position="414"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001947"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022670"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022833"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023049"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="9">
        <source>
            <dbReference type="Pfam" id="PF01435"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="EMBL" id="ABX33506.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="541" mass="58981" checksum="5EB3276F68FE14EE" modified="2008-01-15" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2021-09-29" version="35" xmlns="http://uniprot.org/uniprot">
    <accession>A9BQD3</accession>
    <name>A9BQD3_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_0897</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX33543.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="ABX33543">
        <property type="protein sequence ID" value="ABX33543"/>
        <property type="gene ID" value="Daci_0897"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_0897"/>
    <dbReference type="eggNOG" id="ENOG503496V">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_1903268_0_0_4"/>
    <dbReference type="OMA" id="ENDAHYT"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="1">
        <location>
            <begin position="1"/>
            <end position="20"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5002732412" evidence="1">
        <location>
            <begin position="21"/>
            <end position="146"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX33543.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="146" mass="16159" checksum="FD35926D0EC4CCC8" modified="2008-01-15" version="1">MVRSLLTLPLLVVMASTASAANQCTKGSEFEPPLCPLILPKISQITIQENAAKSPIEKDPAVSCANFVLSISQVRRYFQQAKTTNENDAHYTLDWSPCYASGEIAFSDGSRGSWSINQFRGGALFLEGRDKTVLHCPKCKFKPFQW</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="56" xmlns="http://uniprot.org/uniprot">
    <accession>A9BQW3</accession>
    <name>A9BQW3_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="3">PepSY-associated TM helix domain protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Daci_0272</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="4" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX32918.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012202211.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_0272"/>
    <dbReference type="PRIDE" id="A9BQW3"/>
    <dbReference type="EnsemblBacteria" id="ABX32918">
        <property type="protein sequence ID" value="ABX32918"/>
        <property type="gene ID" value="Daci_0272"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_0272"/>
    <dbReference type="eggNOG" id="COG3182">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_025664_2_0_4"/>
    <dbReference type="OMA" id="WVLFAMF"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005625">
        <property type="entry name" value="PepSY-ass_TM"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR34219">
        <property type="entry name" value="PTHR34219"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03929">
        <property type="entry name" value="PepSY_TM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="2" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="43"/>
            <end position="64"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="176"/>
            <end position="200"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="221"/>
            <end position="246"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="375"/>
            <end position="397"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="418"/>
            <end position="437"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="449"/>
            <end position="468"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="475"/>
            <end position="496"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="511"/>
            <end position="532"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="31"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="1"/>
            <end position="15"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ABX32918.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="575" mass="62799" checksum="A982E5DEEEC56ECF" modified="2008-01-15" version="1"> </sequence>
</entry>
<entry dataset="Swiss-Prot" created="2009-04-14" modified="2022-08-03" version="83" xmlns="http://uniprot.org/uniprot">
    <accession>A9BR02</accession>
    <name>ALR_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Alanine racemase</fullName>
            <ecNumber evidence="1">5.1.1.1</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name type="primary">alr</name>
        <name type="ordered locus">Daci_0311</name>
    </gene>
    <organism>
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference key="1">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain>DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="1">Catalyzes the interconversion of L-alanine and D-alanine. May also act on other amino acids.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>L-alanine = D-alanine</text>
            <dbReference type="Rhea" id="RHEA:20249"/>
            <dbReference type="ChEBI" id="CHEBI:57416"/>
            <dbReference type="ChEBI" id="CHEBI:57972"/>
            <dbReference type="EC" id="5.1.1.1"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>pyridoxal 5'-phosphate</name>
            <dbReference type="ChEBI" id="CHEBI:597326"/>
        </cofactor>
    </comment>
    <comment type="pathway">
        <text evidence="1">Amino-acid biosynthesis; D-alanine biosynthesis; D-alanine from L-alanine: step 1/1.</text>
    </comment>
    <comment type="similarity">
        <text evidence="1">Belongs to the alanine racemase family.</text>
    </comment>
    <dbReference type="EC" id="5.1.1.1" evidence="1"/>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX32957.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012202250.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A9BR02"/>
    <dbReference type="SMR" id="A9BR02"/>
    <dbReference type="STRING" id="398578.Daci_0311"/>
    <dbReference type="PRIDE" id="A9BR02"/>
    <dbReference type="EnsemblBacteria" id="ABX32957">
        <property type="protein sequence ID" value="ABX32957"/>
        <property type="gene ID" value="Daci_0311"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_0311"/>
    <dbReference type="eggNOG" id="COG0787">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_028393_1_0_4"/>
    <dbReference type="OMA" id="HMTHFSD"/>
    <dbReference type="UniPathway" id="UPA00042">
        <property type="reaction ID" value="UER00497"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008784">
        <property type="term" value="F:alanine racemase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030170">
        <property type="term" value="F:pyridoxal phosphate binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030632">
        <property type="term" value="P:D-alanine biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniPathway"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.37.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.20.20.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01201">
        <property type="entry name" value="Ala_racemase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000821">
        <property type="entry name" value="Ala_racemase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009006">
        <property type="entry name" value="Ala_racemase/Decarboxylase_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011079">
        <property type="entry name" value="Ala_racemase_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001608">
        <property type="entry name" value="Ala_racemase_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020622">
        <property type="entry name" value="Ala_racemase_pyridoxalP-BS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029066">
        <property type="entry name" value="PLP-binding_barrel"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00842">
        <property type="entry name" value="Ala_racemase_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01168">
        <property type="entry name" value="Ala_racemase_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00992">
        <property type="entry name" value="ALARACEMASE"/>
    </dbReference>
    <dbReference type="SMART" id="SM01005">
        <property type="entry name" value="Ala_racemase_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50621">
        <property type="entry name" value="SSF50621"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51419">
        <property type="entry name" value="SSF51419"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00492">
        <property type="entry name" value="alr"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00395">
        <property type="entry name" value="ALANINE_RACEMASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword id="KW-0413">Isomerase</keyword>
    <keyword id="KW-0663">Pyridoxal phosphate</keyword>
    <keyword id="KW-1185">Reference proteome</keyword>
    <feature type="chain" id="PRO_1000138594" description="Alanine racemase">
        <location>
            <begin position="1"/>
            <end position="367"/>
        </location>
    </feature>
    <feature type="active site" description="Proton acceptor; specific for D-alanine" evidence="1">
        <location>
            <position position="35"/>
        </location>
    </feature>
    <feature type="active site" description="Proton acceptor; specific for L-alanine" evidence="1">
        <location>
            <position position="259"/>
        </location>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <position position="130"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <position position="307"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="modified residue" description="N6-(pyridoxal phosphate)lysine" evidence="1">
        <location>
            <position position="35"/>
        </location>
    </feature>
    <evidence type="ECO:0000255" key="1">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01201"/>
        </source>
    </evidence>
    <sequence length="367" mass="39850" checksum="988524DDF92AF2B9" modified="2008-01-15" version="1">MPRPILATIHSAALRHNLERVRQAVPDAKLWAVVKANAYGHGIENVFEALRGADGFAMLDLAEAERVRQLGWRGPILLLEGVFEPRDLELCSRLSIWHAVHCDAQIDWLAAHKTQNGHRVFLKMNSGMNRLGFTPERYRAAWARLNALPQVEEISFMTHFSDADAGAGQPGISAQLQRFHDATRDLPGERSVGNSAATLRQGDDALVRCDWVRPGIVLYGSSPDYPQHTAAHWDLQPTQTLSSRIIGVQQLTEGQSVGYGSRFTAEGPLRLGTVACGYADGYPRHCGTGTPVLVNGVRTRTLGCVSMDMLAVDLTPVPDAGMGSEVTLWGRASNGAVLPIDEVAEAAGTLGYELMCAVAPRVNKTID</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="54" xmlns="http://uniprot.org/uniprot">
    <accession>A9BR40</accession>
    <name>A9BR40_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Beta-lactamase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_0349</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX32995.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012202288.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_0349"/>
    <dbReference type="MEROPS" id="S12.950"/>
    <dbReference type="PRIDE" id="A9BR40"/>
    <dbReference type="EnsemblBacteria" id="ABX32995">
        <property type="protein sequence ID" value="ABX32995"/>
        <property type="gene ID" value="Daci_0349"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_0349"/>
    <dbReference type="eggNOG" id="COG1680">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_020027_11_2_4"/>
    <dbReference type="OMA" id="FRWTNYG"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.710.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001466">
        <property type="entry name" value="Beta-lactam-related"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012338">
        <property type="entry name" value="Beta-lactam/transpept-like"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00144">
        <property type="entry name" value="Beta-lactamase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56601">
        <property type="entry name" value="SSF56601"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Beta-lactamase" evidence="1">
        <location>
            <begin position="34"/>
            <end position="388"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF00144"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX32995.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="407" mass="44036" checksum="BBC2382B5DFB4900" modified="2008-01-15" version="1">MTASTDRLHIPGLPWADSPETVGLGSARLARLSARLQRGVDTGEIPGAVALVARRGKLAYLESFGLLDPEAGTAMRPDAIFRIASMSKPITSLAIMMLAEQGRLSIIEPVEQYLPELAALRVGLERAPLARPITLQDLLRHTSGIPYGFAGTEHPVKKMYLDAGLFSGKFTNAQFITRLAQLPLVAQPGETWEYGMSTDVLGRVVEVVSGQTLAAFVREHITGPLGMADTGFHAPDSEIARAARPQPEGPQKQMPPIPPVTRAMMFESGGGGMVSTMADYARLCLFWCNGGTLDGVRLVSRKTVELMTTNHLPASVRMGPDMAYFGAQLPSPEVGQGFGLGFAVRTAPGLNPLPGSVGDFSWSGIYGTFFWVDPKEDLFAILMMQSMAQRIPYRWVMREGVYQSVVD</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2021-06-02" version="51" xmlns="http://uniprot.org/uniprot">
    <accession>A9BR56</accession>
    <name>A9BR56_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Daci_0468</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="2" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX33114.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012202400.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_0468"/>
    <dbReference type="EnsemblBacteria" id="ABX33114">
        <property type="protein sequence ID" value="ABX33114"/>
        <property type="gene ID" value="Daci_0468"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_0468"/>
    <dbReference type="eggNOG" id="COG1961">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_059317_0_0_4"/>
    <dbReference type="OMA" id="DSDIRIN"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR026325">
        <property type="entry name" value="DUF932"/>
    </dbReference>
    <dbReference type="Pfam" id="PF06067">
        <property type="entry name" value="DUF932"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ABX33114.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="274" mass="30734" checksum="32A6FA7A43CD4851" modified="2008-01-15" version="1">MLATRFASHSPALRSGYPLSDDQIRRVAPSIFADAPHESRSERYAYIPTAAVLTELRKEGFQPFMVTQTRVRDEGKREHTKHMLRLRHASQINGAEANEIVLLNSHDGTSSYQMLAGMFRFVCSNGLVCGDTVADVRVPHKGNVAGHVIEGAYEVLSGFERVKESRDLMRGITLDDGESEVFARAALALKYDDPDKPAPVTESQILMPRRFDDRRPDLWSVFNRTQENLTKGGLSGRSTNGRRQQTRPVQGIDSDIRLNRALWLLADGMRQLKA</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="72" xmlns="http://uniprot.org/uniprot">
    <accession>A9BRG8</accession>
    <name>A9BRG8_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Putative RNA methylase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ordered locus">Daci_0683</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="5" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX33329.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012202615.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_0683"/>
    <dbReference type="PRIDE" id="A9BRG8"/>
    <dbReference type="EnsemblBacteria" id="ABX33329">
        <property type="protein sequence ID" value="ABX33329"/>
        <property type="gene ID" value="Daci_0683"/>
    </dbReference>
    <dbReference type="GeneID" id="60685236"/>
    <dbReference type="KEGG" id="dac:Daci_0683"/>
    <dbReference type="eggNOG" id="COG0116">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_032119_3_0_4"/>
    <dbReference type="OMA" id="GFMYKAN"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008168">
        <property type="term" value="F:methyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003723">
        <property type="term" value="F:RNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0032259">
        <property type="term" value="P:methylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.150">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000241">
        <property type="entry name" value="RNA_methylase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029063">
        <property type="entry name" value="SAM-dependent_MTases_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004114">
        <property type="entry name" value="THUMP_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02926">
        <property type="entry name" value="THUMP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01170">
        <property type="entry name" value="UPF0020"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00981">
        <property type="entry name" value="THUMP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53335">
        <property type="entry name" value="SSF53335"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51165">
        <property type="entry name" value="THUMP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1 4" id="KW-0489">Methyltransferase</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0694">RNA-binding</keyword>
    <keyword evidence="1 4" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="THUMP" evidence="3">
        <location>
            <begin position="48"/>
            <end position="159"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022603"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00529"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="PROSITE" id="PS51165"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="ABX33329.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="426" mass="47315" checksum="F1EFD2548622D963" modified="2008-01-15" version="1">MNQLHLFLPCAAGVEGFLADEVHAITGLSGHDLMVGRGGVMVRGLWRDALLLNLHSRLAQRVLVQLSQTLYRNENDLYRAASEVAWEIWFSPRESFKIEVTAQHSPLTSLNFAALRVKDAIADRFRDRKGVRPDVETRHPDVRVHLHLTTDEATIYIDTSGEALFKRGWREDKGDAPLKETLAAAMIAATGWDPHGDDPQPLYDPCCGSGTVLIEAAQIARRIPAGILRRFAFEKLVPFQRHVWEAMLDEAEAAILPDSPVAIYGSDVSHRMVDFAQRNAERAGVGQTVQLRGGDALQRMPPCEQPGLMLLNPPYGERIAAAGSAGRSAGERMEVVERAGRETAQTEDGVEFFSQLATHWKKNYSGWSAWMLTPDLKLPGKMRLKEARRTPMWNGPIECRLFRFDMIRGAVKPRKAAEGPAEGAAP</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="68" xmlns="http://uniprot.org/uniprot">
    <accession>A9BRK9</accession>
    <name>A9BRK9_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="7">Porin, gram-negative type</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ordered locus">Daci_0724</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="8" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX33370.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012202656.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_0724"/>
    <dbReference type="PRIDE" id="A9BRK9"/>
    <dbReference type="EnsemblBacteria" id="ABX33370">
        <property type="protein sequence ID" value="ABX33370"/>
        <property type="gene ID" value="Daci_0724"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_0724"/>
    <dbReference type="eggNOG" id="COG3203">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_038238_1_1_4"/>
    <dbReference type="OMA" id="QYVNTGN"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046930">
        <property type="term" value="C:pore complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015288">
        <property type="term" value="F:porin activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006811">
        <property type="term" value="P:ion transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd00342">
        <property type="entry name" value="gram_neg_porins"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.160.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR033900">
        <property type="entry name" value="Gram_neg_porin_domain"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023614">
        <property type="entry name" value="Porin_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002299">
        <property type="entry name" value="Porin_Neis"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13609">
        <property type="entry name" value="Porin_4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00184">
        <property type="entry name" value="NEISSPPORIN"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-0406">Ion transport</keyword>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-0626">Porin</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="5" id="KW-0732">Signal</keyword>
    <keyword evidence="2" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1134">Transmembrane beta strand</keyword>
    <keyword evidence="4" id="KW-0813">Transport</keyword>
    <feature type="signal peptide" evidence="5">
        <location>
            <begin position="1"/>
            <end position="20"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5002735971" evidence="5">
        <location>
            <begin position="21"/>
            <end position="348"/>
        </location>
    </feature>
    <feature type="domain" description="Porin_4" evidence="6">
        <location>
            <begin position="8"/>
            <end position="318"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022452"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023065"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023114"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="Pfam" id="PF13609"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="ABX33370.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="348" mass="37418" checksum="704C88E04CF23BB7" modified="2008-01-15" version="1">MKFNRILAAALPVISLAASAQSSITLFGIVDVNGRYVKNSDLPSNMTMNNSGLSSGRFGFRGTEDLGGGLRAEFWLESDLYADTGTTNANGKFFQRRSTVSLAGGFGELRLGRDFTPAAQNPTKFDPFNVIGLANSNIISRLPGTFSNYYRSDNAIQYFTPKWSGFQAEVMYALDEDPVSSAGRHFGSRLTYDSGPLNLALTYGSTDVNAAGTKLKQYGAGASYDFGFARLMGYFQREDLPYGTYGTRIAGSEDRWQVGLTVPVGANYIRASYVRTDSRRGPVAFNGSDANRYAIGYVHNLSRRTALYGTLARVTNKGGANFSLNGGTTGLAAGGSSTGAELGMRHSF</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="91" xmlns="http://uniprot.org/uniprot">
    <accession>A9BRM0</accession>
    <name>A9BRM0_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">Histidine kinase</fullName>
            <ecNumber evidence="2">2.7.13.3</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="9" type="ordered locus">Daci_0735</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="9 10" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="10" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>ATP + protein L-histidine = ADP + protein N-phospho-L-histidine.</text>
            <dbReference type="EC" id="2.7.13.3"/>
        </reaction>
    </comment>
    <dbReference type="EC" id="2.7.13.3" evidence="2"/>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX33381.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012202667.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_0735"/>
    <dbReference type="PRIDE" id="A9BRM0"/>
    <dbReference type="EnsemblBacteria" id="ABX33381">
        <property type="protein sequence ID" value="ABX33381"/>
        <property type="gene ID" value="Daci_0735"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_0735"/>
    <dbReference type="eggNOG" id="COG2205">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="eggNOG" id="COG3829">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_373310_0_0_4"/>
    <dbReference type="OMA" id="TICIEVQ"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000155">
        <property type="term" value="F:phosphorelay sensor kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd00082">
        <property type="entry name" value="HisKA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="CDD" id="cd00130">
        <property type="entry name" value="PAS"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.565.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003594">
        <property type="entry name" value="HATPase_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036890">
        <property type="entry name" value="HATPase_C_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005467">
        <property type="entry name" value="His_kinase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003661">
        <property type="entry name" value="HisK_dim/P"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036097">
        <property type="entry name" value="HisK_dim/P_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001610">
        <property type="entry name" value="PAC"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000014">
        <property type="entry name" value="PAS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000700">
        <property type="entry name" value="PAS-assoc_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035965">
        <property type="entry name" value="PAS-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013656">
        <property type="entry name" value="PAS_4"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004358">
        <property type="entry name" value="Sig_transdc_His_kin-like_C"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02518">
        <property type="entry name" value="HATPase_c"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00512">
        <property type="entry name" value="HisKA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08448">
        <property type="entry name" value="PAS_4"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00344">
        <property type="entry name" value="BCTRLSENSOR"/>
    </dbReference>
    <dbReference type="SMART" id="SM00387">
        <property type="entry name" value="HATPase_c"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00388">
        <property type="entry name" value="HisKA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00086">
        <property type="entry name" value="PAC"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SMART" id="SM00091">
        <property type="entry name" value="PAS"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47384">
        <property type="entry name" value="SSF47384"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55785">
        <property type="entry name" value="SSF55785"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55874">
        <property type="entry name" value="SSF55874"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00229">
        <property type="entry name" value="sensory_box"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50109">
        <property type="entry name" value="HIS_KIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50113">
        <property type="entry name" value="PAC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50112">
        <property type="entry name" value="PAS"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="9" id="KW-0418">Kinase</keyword>
    <keyword evidence="5" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-0597">Phosphoprotein</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="9" id="KW-0808">Transferase</keyword>
    <keyword evidence="5" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="5" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="21"/>
            <end position="42"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="302"/>
            <end position="324"/>
        </location>
    </feature>
    <feature type="domain" description="PAS" evidence="7">
        <location>
            <begin position="347"/>
            <end position="421"/>
        </location>
    </feature>
    <feature type="domain" description="PAS" evidence="7">
        <location>
            <begin position="478"/>
            <end position="541"/>
        </location>
    </feature>
    <feature type="domain" description="PAC" evidence="8">
        <location>
            <begin position="544"/>
            <end position="596"/>
        </location>
    </feature>
    <feature type="domain" description="Histidine kinase" evidence="6">
        <location>
            <begin position="614"/>
            <end position="831"/>
        </location>
    </feature>
    <feature type="coiled-coil region" evidence="4">
        <location>
            <begin position="330"/>
            <end position="357"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00000085"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00012438"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022553"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="PROSITE" id="PS50109"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="PROSITE" id="PS50112"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="PROSITE" id="PS50113"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="ABX33381.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="841" mass="91197" checksum="9AEB384480845583" modified="2008-01-15" version="1"> </sequence>
</entry>
<entry dataset="Swiss-Prot" created="2009-04-14" modified="2022-08-03" version="64" xmlns="http://uniprot.org/uniprot">
    <accession>A9BRW7</accession>
    <name>RL18_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">50S ribosomal protein L18</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="1" type="primary">rplR</name>
        <name type="ordered locus">Daci_1038</name>
    </gene>
    <organism>
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference key="1">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain>DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="1">This is one of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance.</text>
    </comment>
    <comment type="subunit">
        <text evidence="1">Part of the 50S ribosomal subunit; part of the 5S rRNA/L5/L18/L25 subcomplex. Contacts the 5S and 23S rRNAs.</text>
    </comment>
    <comment type="similarity">
        <text evidence="1">Belongs to the universal ribosomal protein uL18 family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX33684.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012202970.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A9BRW7"/>
    <dbReference type="SMR" id="A9BRW7"/>
    <dbReference type="STRING" id="398578.Daci_1038"/>
    <dbReference type="PRIDE" id="A9BRW7"/>
    <dbReference type="EnsemblBacteria" id="ABX33684">
        <property type="protein sequence ID" value="ABX33684"/>
        <property type="gene ID" value="Daci_1038"/>
    </dbReference>
    <dbReference type="GeneID" id="60685600"/>
    <dbReference type="KEGG" id="dac:Daci_1038"/>
    <dbReference type="eggNOG" id="COG0256">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_098841_0_1_4"/>
    <dbReference type="OMA" id="NKQIYAQ"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005840">
        <property type="term" value="C:ribosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0019843">
        <property type="term" value="F:rRNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003735">
        <property type="term" value="F:structural constituent of ribosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006412">
        <property type="term" value="P:translation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01337_B">
        <property type="entry name" value="Ribosomal_L18_B"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005484">
        <property type="entry name" value="Ribosomal_L18"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004389">
        <property type="entry name" value="Ribosomal_L18_bac-type"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR12899">
        <property type="entry name" value="PTHR12899"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00861">
        <property type="entry name" value="Ribosomal_L18p"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00060">
        <property type="entry name" value="L18_bact"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword id="KW-1185">Reference proteome</keyword>
    <keyword id="KW-0687">Ribonucleoprotein</keyword>
    <keyword id="KW-0689">Ribosomal protein</keyword>
    <keyword id="KW-0694">RNA-binding</keyword>
    <keyword id="KW-0699">rRNA-binding</keyword>
    <feature type="chain" id="PRO_1000142651" description="50S ribosomal protein L18">
        <location>
            <begin position="1"/>
            <end position="121"/>
        </location>
    </feature>
    <evidence type="ECO:0000255" key="1">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01337"/>
        </source>
    </evidence>
    <sequence length="121" mass="12915" checksum="D774C443B41A127E" modified="2008-01-15" version="1">MLTKKEQRLRRARQTRIRIAQQGVARLSVNRTNLHIYASVVSEDGTKVLASASTAEAEVRTQLGAIGKGGNVAAATLIGKRIAEKAKAAGVEKVAFDRAGFAYHGRVKALAEAAREAGLQF</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="57" xmlns="http://uniprot.org/uniprot">
    <accession>A9BS08</accession>
    <name>A9BS08_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Fibronectin type III domain protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ordered locus">Daci_0772</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="5" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX33418.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_0772"/>
    <dbReference type="EnsemblBacteria" id="ABX33418">
        <property type="protein sequence ID" value="ABX33418"/>
        <property type="gene ID" value="Daci_0772"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_0772"/>
    <dbReference type="eggNOG" id="COG3055">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_548276_0_0_4"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd00063">
        <property type="entry name" value="FN3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.40.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003961">
        <property type="entry name" value="FN3_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036116">
        <property type="entry name" value="FN3_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013783">
        <property type="entry name" value="Ig-like_fold"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00041">
        <property type="entry name" value="fn3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF49265">
        <property type="entry name" value="SSF49265"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50853">
        <property type="entry name" value="FN3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0732">Signal</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="signal peptide" evidence="2">
        <location>
            <begin position="1"/>
            <end position="26"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5002732455" evidence="2">
        <location>
            <begin position="27"/>
            <end position="497"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="470"/>
            <end position="490"/>
        </location>
    </feature>
    <feature type="domain" description="Fibronectin type-III" evidence="3">
        <location>
            <begin position="224"/>
            <end position="320"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="PROSITE" id="PS50853"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="ABX33418.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="497" mass="49648" checksum="5F2B51CB01A9264C" modified="2008-01-15" version="1">MHSVKGVARKSCLGLAVFAALGPAQAAELLANGSFEQNSGPGSLVFTGWQSVSQAGSKGGFAAQQGARGAITPVAVPAPPDGAFALMSDQPGPGSHVLYQDVAIPAGSPATLSARVYVQNAAKVAAAPATLDYTVAAPNQQVRIDVINPAAAPDSLGAGVLANVFQWPPATAPGPSASGSGYQSLQFDLSAYAGQTVRLRIAEVDNRQSLFFGVDAMSVWSGSVPGALQPPADTGFFAQGTAVQLTFDPVASIPGQTVTGYVAQCVPQGGGAVLMGTSSTPTVAVNGLTPGVAYNCSVAAQSSSGAGPASQPLTVNAPVAGATTISTLQGGSATLTVSNPASGCSLQSASLVRAQSLPAAPPQGAAAYPLGVLDLRSSGCNSGATLKLSVTMPQALPAGAQYWKYGPTAANPAPHWYAFNDGFKVISANTYTLEVQDGGLGDDDLQANGVVVDPGGIMVMAATSAAAIPVWNLAGLAATSASVLLAMAAMRRRRRTR</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="64" xmlns="http://uniprot.org/uniprot">
    <accession>A9BS36</accession>
    <name>A9BS36_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">L-carnitine dehydratase/bile acid-inducible protein F</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_0800</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX33446.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012202732.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_0800"/>
    <dbReference type="PRIDE" id="A9BS36"/>
    <dbReference type="EnsemblBacteria" id="ABX33446">
        <property type="protein sequence ID" value="ABX33446"/>
        <property type="gene ID" value="Daci_0800"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_0800"/>
    <dbReference type="eggNOG" id="COG1804">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_033975_0_0_4"/>
    <dbReference type="OMA" id="NCAPYEV"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003824">
        <property type="term" value="F:catalytic activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.1540.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.10540">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003673">
        <property type="entry name" value="CoA-Trfase_fam_III"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR044855">
        <property type="entry name" value="CoA-Trfase_III_dom3_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023606">
        <property type="entry name" value="CoA-Trfase_III_dom_1_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02515">
        <property type="entry name" value="CoA_transf_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF89796">
        <property type="entry name" value="SSF89796"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="371"/>
            <end position="391"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Pro residues" evidence="1">
        <location>
            <begin position="374"/>
            <end position="391"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX33446.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="391" mass="41450" checksum="64FCD5076A55D443" modified="2008-01-15" version="1">MESMQQTHGLSSALDGLRVVDLSRILAGPWCTQNLADLGASVLKIERPGTGDDTRAWGPPFVQAPGGEAVSAYFLSCNRGKQSVALDFTEPASHAWLLRQIRDADVLVENYKAGALARHGLDYAALAAINPGLIYLSITGFGQSGPFAHKPGYDYVFQGLGGLMGYTGVADGEEGAGPLRTGVAVVDLMTGMYATSAVLAAVVQRQRTGRGQHIDLALLDVAVAMNANQAANYLVSGENPRRTGNAHPNCAPYEVFACEDGHLILAIGNDGQFAALCSVLGTDWHLDARFATNAARLTGMAQLRPLLRAALGRWPLQALTDALDTAQVPWGCINTLEQVFAHPQVRHRQMLQTVEHPQLGTLKLVRNPMVPAGSGAQVPPPPVLGAAPQDL</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="61" xmlns="http://uniprot.org/uniprot">
    <accession>A9BS46</accession>
    <name>A9BS46_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Phenylacetate-CoA oxygenase, PaaG subunit</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_0810</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX33456.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012202742.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_0810"/>
    <dbReference type="PRIDE" id="A9BS46"/>
    <dbReference type="EnsemblBacteria" id="ABX33456">
        <property type="protein sequence ID" value="ABX33456"/>
        <property type="gene ID" value="Daci_0810"/>
    </dbReference>
    <dbReference type="GeneID" id="60685371"/>
    <dbReference type="KEGG" id="dac:Daci_0810"/>
    <dbReference type="eggNOG" id="COG3396">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_879733_0_0_4"/>
    <dbReference type="OMA" id="MQPEANW"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0097266">
        <property type="term" value="F:phenylacetyl-CoA 1,2-epoxidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0010124">
        <property type="term" value="P:phenylacetate catabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.1260.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012347">
        <property type="entry name" value="Ferritin-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009078">
        <property type="entry name" value="Ferritin-like_SF"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011881">
        <property type="entry name" value="PaaA"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007814">
        <property type="entry name" value="PaaA_PaaC"/>
    </dbReference>
    <dbReference type="Pfam" id="PF05138">
        <property type="entry name" value="PaaA_PaaC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47240">
        <property type="entry name" value="SSF47240"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR02156">
        <property type="entry name" value="PA_CoA_Oxy1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="21"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX33456.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="340" mass="38579" checksum="3EA7FD0EE28F9178" modified="2008-01-15" version="1">MYTQAMDTMGKEAGDGGKAVRSADEMRLQQRFDERIDAGEFIEAKDWMPDNYRKTLLRQISQHAHSEIVGMLPEGNWISRAPTLKRKAILLAKVQDEGGHGLYLYAAAETLGSSRDQMLHALHTGKAKYSSIFNYPTLTWADMGTIGWLVDGAAIMNQVPICRCSYAPYARAMVRICREESFHQRQGYEALLTMMQQGTEAQKAMVQDAVNRWWWPSIMMFGPPDDQSPNSAQSMRWGIKRISNDALRQKFIDATVDQAKVLGVTLPDPDLKWNEARQAHDHGPIDWDEFWRVIAGDGPCNRERLGARVKAWDEGAWVREAALAHARKQTQRNQTRKEAA</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="97" xmlns="http://uniprot.org/uniprot">
    <accession>A9BS50</accession>
    <name>A9BS50_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="7">Phenylacetate-CoA oxygenase/reductase, PaaK subunit</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ordered locus">Daci_0814</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="8" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX33460.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012202746.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_0814"/>
    <dbReference type="PRIDE" id="A9BS50"/>
    <dbReference type="EnsemblBacteria" id="ABX33460">
        <property type="protein sequence ID" value="ABX33460"/>
        <property type="gene ID" value="Daci_0814"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_0814"/>
    <dbReference type="eggNOG" id="COG1018">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_003827_14_1_4"/>
    <dbReference type="OMA" id="FLCGPFE"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051537">
        <property type="term" value="F:2 iron, 2 sulfur cluster binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016491">
        <property type="term" value="F:oxidoreductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0010124">
        <property type="term" value="P:phenylacetate catabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd00207">
        <property type="entry name" value="fer2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.10.20.30">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.80">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036010">
        <property type="entry name" value="2Fe-2S_ferredoxin-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001041">
        <property type="entry name" value="2Fe-2S_ferredoxin-type"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006058">
        <property type="entry name" value="2Fe2S_fd_BS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012675">
        <property type="entry name" value="Beta-grasp_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008333">
        <property type="entry name" value="Cbr1-like_FAD-bd_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017927">
        <property type="entry name" value="FAD-bd_FR_type"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001709">
        <property type="entry name" value="Flavoprot_Pyr_Nucl_cyt_Rdtase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR039261">
        <property type="entry name" value="FNR_nucleotide-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001433">
        <property type="entry name" value="OxRdtase_FAD/NAD-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011884">
        <property type="entry name" value="PA_CoA_Oase5"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017938">
        <property type="entry name" value="Riboflavin_synthase-like_b-brl"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00970">
        <property type="entry name" value="FAD_binding_6"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00111">
        <property type="entry name" value="Fer2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00175">
        <property type="entry name" value="NAD_binding_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00371">
        <property type="entry name" value="FPNCR"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52343">
        <property type="entry name" value="SSF52343"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54292">
        <property type="entry name" value="SSF54292"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF63380">
        <property type="entry name" value="SSF63380"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR02160">
        <property type="entry name" value="PA_CoA_Oxy5"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00197">
        <property type="entry name" value="2FE2S_FER_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51085">
        <property type="entry name" value="2FE2S_FER_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51384">
        <property type="entry name" value="FAD_FR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0001">2Fe-2S</keyword>
    <keyword evidence="3" id="KW-0408">Iron</keyword>
    <keyword evidence="4" id="KW-0411">Iron-sulfur</keyword>
    <keyword evidence="2" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="FAD-binding FR-type" evidence="6">
        <location>
            <begin position="5"/>
            <end position="109"/>
        </location>
    </feature>
    <feature type="domain" description="2Fe-2S ferredoxin-type" evidence="5">
        <location>
            <begin position="274"/>
            <end position="365"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022714"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023004"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023014"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="PROSITE" id="PS51085"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="PROSITE" id="PS51384"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="ABX33460.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="365" mass="39865" checksum="6F87EFAAD5DFB68F" modified="2008-01-15" version="1">MTTTTMFHPLRVRSIAPDTAEAVVVSFDVPPALREVFGFTQGQYLTLRHQIDGQDLRRSYSICAGVDDGELRVGVRKVRGGQFSNWINEHLRPGDTLQVMAPQGRFFVPIEPGAARHHVGIAGGSGITPILSIMKTVLAREPASRFTLIYGNRQLQSTMFKEEIEDLKNRYISRLSLQHVFSDEHTDLPLNMGVMDRSKIAEFLQGVVPATHIDHVYICGPFQMNDEAEAALLAAGVAEERIHIERFGVALPAAGQGTVGAVVHEAQPGDAATARITLVRDGLSREIPFTRGQASILDAASSAGLEVPYSCTSGVCGTCRAKVVEGEVRMERNFALDKNEVACGFVLTCQAHPLTERVVLSFDER</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="50" xmlns="http://uniprot.org/uniprot">
    <accession>A9BSC9</accession>
    <name>A9BSC9_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ordered locus">Daci_1098</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="5" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Periplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the UPF0065 (bug) family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX33743.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012203029.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_1098"/>
    <dbReference type="PRIDE" id="A9BSC9"/>
    <dbReference type="EnsemblBacteria" id="ABX33743">
        <property type="protein sequence ID" value="ABX33743"/>
        <property type="gene ID" value="Daci_1098"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_1098"/>
    <dbReference type="eggNOG" id="COG3181">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_045683_0_0_4"/>
    <dbReference type="OMA" id="GPGNIAH"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0042597">
        <property type="term" value="C:periplasmic space"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.190.150">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005064">
        <property type="entry name" value="BUG"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR042100">
        <property type="entry name" value="Bug_dom1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR42928">
        <property type="entry name" value="PTHR42928"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03401">
        <property type="entry name" value="TctC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF017082">
        <property type="entry name" value="YflP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="3">
        <location>
            <begin position="1"/>
            <end position="33"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5002733038" evidence="3">
        <location>
            <begin position="34"/>
            <end position="339"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004418"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00006987"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="ABX33743.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="339" mass="36186" checksum="C8C5CED9EE0D9E2F" modified="2008-01-15" version="1">MATRQPRAPSRRTALALCLAPCLTLCAATAAQAQAPQEDKWPTRPVRIVVGFPAGSFTDTIARALSEPLSKSLGQPVVVENKPGANGAIGVGEVARAAPDGYTLLVTNSSSITINPQIYKKITYRAKDFAPITMVLDAPFILTVNPEWAQKHQIRSAKDVIAFAKGHPDKLSYGSAGPGNIAHLAYAAWSNRTGVKTTHVPYKSASQAQMAVLSGELDTQFDTWSALPHIASGKLVALAVTAPRRMQQLPEVPTMAEAGYADFDVTFWAGLLAPAGTPPAIVNRLYEASRGVLQDARIRAVLSSQGEPVMMPPAPFGQRIAKEVSDWGQVIQREALSLD</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="70" xmlns="http://uniprot.org/uniprot">
    <accession>A9BSF1</accession>
    <name>A9BSF1_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="8">FAD dependent oxidoreductase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="8" type="ordered locus">Daci_1120</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="9" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>FAD</name>
            <dbReference type="ChEBI" id="CHEBI:57692"/>
        </cofactor>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the FAD-dependent glycerol-3-phosphate dehydrogenase family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX33765.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012203051.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_1120"/>
    <dbReference type="PRIDE" id="A9BSF1"/>
    <dbReference type="EnsemblBacteria" id="ABX33765">
        <property type="protein sequence ID" value="ABX33765"/>
        <property type="gene ID" value="Daci_1120"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_1120"/>
    <dbReference type="eggNOG" id="COG0578">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_015740_5_1_4"/>
    <dbReference type="OMA" id="CIVNAAG"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009331">
        <property type="term" value="C:glycerol-3-phosphate dehydrogenase complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004368">
        <property type="term" value="F:glycerol-3-phosphate dehydrogenase (quinone) activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006072">
        <property type="term" value="P:glycerol-3-phosphate metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.8.870">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.50.50.60">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR031656">
        <property type="entry name" value="DAO_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038299">
        <property type="entry name" value="DAO_C_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006076">
        <property type="entry name" value="FAD-dep_OxRdtase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036188">
        <property type="entry name" value="FAD/NAD-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000447">
        <property type="entry name" value="G3P_DH_FAD-dep"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11985">
        <property type="entry name" value="PTHR11985"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01266">
        <property type="entry name" value="DAO"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF16901">
        <property type="entry name" value="DAO_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR01001">
        <property type="entry name" value="FADG3PDH"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51905">
        <property type="entry name" value="SSF51905"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-0274">FAD</keyword>
    <keyword evidence="3" id="KW-0285">Flavoprotein</keyword>
    <keyword evidence="5" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="DAO" evidence="6">
        <location>
            <begin position="39"/>
            <end position="398"/>
        </location>
    </feature>
    <feature type="domain" description="DAO_C" evidence="7">
        <location>
            <begin position="420"/>
            <end position="535"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001974"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00007330"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022630"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022827"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023002"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="Pfam" id="PF01266"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="Pfam" id="PF16901"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="ABX33765.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="560" mass="61255" checksum="95D3FAFFFA39166D" modified="2008-01-15" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="61" xmlns="http://uniprot.org/uniprot">
    <accession>A9BT81</accession>
    <name>A9BT81_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Taurine dioxygenase</fullName>
            <ecNumber evidence="3">1.14.11.17</ecNumber>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Daci_2006</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="4" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EC" id="1.14.11.17" evidence="3"/>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX34646.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012203931.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_2006"/>
    <dbReference type="PRIDE" id="A9BT81"/>
    <dbReference type="EnsemblBacteria" id="ABX34646">
        <property type="protein sequence ID" value="ABX34646"/>
        <property type="gene ID" value="Daci_2006"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_2006"/>
    <dbReference type="eggNOG" id="COG2175">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_036005_2_1_4"/>
    <dbReference type="OMA" id="PPFGCVL"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000908">
        <property type="term" value="F:taurine dioxygenase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.60.130.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR042098">
        <property type="entry name" value="TauD-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003819">
        <property type="entry name" value="TauD/TfdA-like"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02668">
        <property type="entry name" value="TauD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-0223">Dioxygenase</keyword>
    <keyword evidence="1 3" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="TauD" evidence="2">
        <location>
            <begin position="3"/>
            <end position="274"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023002"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF02668"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ABX34646.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="282" mass="31667" checksum="286675E4BD7E1837" modified="2008-01-15" version="1">MRIEPMTCAIGAELLGVRLADAVRDDALFSEIRAALLRHKVLFLRDQGLTRAEHVAFARRFGELEDHPVAGSDPEHPGLVRIYRTPEQPNDRYENSWHCDATWREAPPMGCVLHCVECPPVGGDTLWANMALAYERLPDAVKALIAPLRARHSIECTFGAAMPIERRLALKAQYPDAEHPVVRTHPETGEKVLFVNGFTTHFTNFHTPANVRVGQDFTQGASGLLQYLIGQAAIPEYQVRWRWRAGSVAIWDNRATQHYAAMDYPPSHRKMERAGIVGTPTF</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="87" xmlns="http://uniprot.org/uniprot">
    <accession>A9BT97</accession>
    <name>A9BT97_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Transcriptional regulator, GntR family with aminotransferase domain</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ordered locus">Daci_2022</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="5" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">In the C-terminal section; belongs to the class-I pyridoxal-phosphate-dependent aminotransferase family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX34662.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012203947.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_2022"/>
    <dbReference type="PRIDE" id="A9BT97"/>
    <dbReference type="EnsemblBacteria" id="ABX34662">
        <property type="protein sequence ID" value="ABX34662"/>
        <property type="gene ID" value="Daci_2022"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_2022"/>
    <dbReference type="eggNOG" id="COG1167">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_017584_0_1_4"/>
    <dbReference type="OMA" id="CDYVYVT"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003700">
        <property type="term" value="F:DNA-binding transcription factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030170">
        <property type="term" value="F:pyridoxal phosphate binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008483">
        <property type="term" value="F:transaminase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009058">
        <property type="term" value="P:biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd07377">
        <property type="entry name" value="WHTH_GntR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.640.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004839">
        <property type="entry name" value="Aminotransferase_I/II"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015424">
        <property type="entry name" value="PyrdxlP-dep_Trfase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015421">
        <property type="entry name" value="PyrdxlP-dep_Trfase_major"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000524">
        <property type="entry name" value="Tscrpt_reg_HTH_GntR"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036390">
        <property type="entry name" value="WH_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00155">
        <property type="entry name" value="Aminotran_1_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00392">
        <property type="entry name" value="GntR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00345">
        <property type="entry name" value="HTH_GNTR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46785">
        <property type="entry name" value="SSF46785"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53383">
        <property type="entry name" value="SSF53383"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50949">
        <property type="entry name" value="HTH_GNTR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-0032">Aminotransferase</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="HTH gntR-type" evidence="3">
        <location>
            <begin position="30"/>
            <end position="98"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="97"/>
            <end position="120"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00005384"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="PROSITE" id="PS50949"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="ABX34662.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="509" mass="56454" checksum="21A0649F0AB731F3" modified="2008-01-15" version="1">MTDKRAATQPQPPEGAMWGQLFRRSARPSLSLQGQIREMLVDAILSGILAPGESIPSSRELARHLGVARITVVLAYQQLAEEAFLLSRQRKGHFIHPDVLKGRTPGGAAASSPPGEGRRTDWSRRLWLLPSQQRSIVKEEDWQRYPYPFLYGQFDKELFPTAAWRECCLKALGVLDIRQWAPDQIARDDEMLIQQVQTKILPRRGVWASADELIITVGAQHALYMVADLLMREGTAVGIEEPGYPDARNIFSSRTSQVIPLPVDGQGLPVTPLLRQLDYLYVTPSHQCPTGVTMPLARREALLEMAEAHDIILIEDDYESESSFDGQPIPALKSLDRSNRVIYVGSLSKSLAPGLRVGYIVAAPELIRELRALRRLMIRHPATFVQRTLAMFISLGHYEAQQRRLAQAQKERHAALTAAMAEHAPGCRITPVRGGGSCWVQLPDNMPVQALAQRAAAHGVLIEPGDVFFARPGTPGSFMRMGYQSIPANDIGQGVKALADAIREEQPEK</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="63" xmlns="http://uniprot.org/uniprot">
    <accession>A9BTB0</accession>
    <name>A9BTB0_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Sporulation domain protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ordered locus">Daci_2035</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="5" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX34675.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012203960.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_2035"/>
    <dbReference type="PRIDE" id="A9BTB0"/>
    <dbReference type="EnsemblBacteria" id="ABX34675">
        <property type="protein sequence ID" value="ABX34675"/>
        <property type="gene ID" value="Daci_2035"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_2035"/>
    <dbReference type="eggNOG" id="COG3147">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_614975_0_0_4"/>
    <dbReference type="OMA" id="NYYINIG"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0042834">
        <property type="term" value="F:peptidoglycan binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.70.1070">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007730">
        <property type="entry name" value="SPOR-like_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036680">
        <property type="entry name" value="SPOR-like_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF05036">
        <property type="entry name" value="SPOR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF110997">
        <property type="entry name" value="SSF110997"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51724">
        <property type="entry name" value="SPOR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0472">Membrane</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="2" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="156"/>
            <end position="176"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="182"/>
            <end position="206"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="243"/>
            <end position="262"/>
        </location>
    </feature>
    <feature type="domain" description="SPOR" evidence="3">
        <location>
            <begin position="445"/>
            <end position="525"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="52"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="304"/>
            <end position="355"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="394"/>
            <end position="434"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Pro residues" evidence="1">
        <location>
            <begin position="314"/>
            <end position="332"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="PROSITE" id="PS51724"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="ABX34675.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="533" mass="53641" checksum="6C8424CA24CF3D77" modified="2008-01-15" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="57" xmlns="http://uniprot.org/uniprot">
    <accession>A9BTC6</accession>
    <name>A9BTC6_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Daci_2051</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="2" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX34691.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012203974.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_2051"/>
    <dbReference type="PRIDE" id="A9BTC6"/>
    <dbReference type="EnsemblBacteria" id="ABX34691">
        <property type="protein sequence ID" value="ABX34691"/>
        <property type="gene ID" value="Daci_2051"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_2051"/>
    <dbReference type="eggNOG" id="COG3832">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_2059526_0_0_4"/>
    <dbReference type="OMA" id="PQKVWRA"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.530.20">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023393">
        <property type="entry name" value="START-like_dom_sf"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ABX34691.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="118" mass="13203" checksum="AA31F51D76792A7E" modified="2008-01-15" version="1">MNKMSNMDTDDAARELVQEYALDAPPEKVWRALSIPELRAQWLPGTEHAEPLRQVPQQELRLRLREAEPPFLESTVDLQISPGADGGTLLRIVHVLTDARVQPAREAANDGGFLMYAT</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="67" xmlns="http://uniprot.org/uniprot">
    <accession>A9BTJ2</accession>
    <name>A9BTJ2_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_2322</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX34960.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012204242.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_2322"/>
    <dbReference type="PRIDE" id="A9BTJ2"/>
    <dbReference type="EnsemblBacteria" id="ABX34960">
        <property type="protein sequence ID" value="ABX34960"/>
        <property type="gene ID" value="Daci_2322"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_2322"/>
    <dbReference type="eggNOG" id="COG3028">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_106757_1_0_4"/>
    <dbReference type="OMA" id="QMQFVGK"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="CDD" id="cd16331">
        <property type="entry name" value="YjgA-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.60.30">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023153">
        <property type="entry name" value="PSPTO4464-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006839">
        <property type="entry name" value="Ribosome-assoc_YjgA"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR38101">
        <property type="entry name" value="PTHR38101"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04751">
        <property type="entry name" value="DUF615"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF158710">
        <property type="entry name" value="SSF158710"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="204"/>
            <end position="225"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX34960.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="225" mass="25196" checksum="E484DD9EA5B430BC" modified="2008-01-15" version="1">MSRKPKKGYYVKGHFVAEGSELDLQLKAELKGTPDSSKTDLKRESDALQDLGKDLLTLRSDLFKRLQLPDQLADALAEAKRITNFEGKRRQMQFVGKLMRKLDEAEIAAVRAALDEQHNGSAAEKMVLHAAEQWRDRLIAEESALSIWLDHFPDTDTQQLRALIRQARKDMPGAHEANVQESTGLAQRKGRAYRDLFQLVRQQLGGTGREAAEDGDGAGEEADDE</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="39" xmlns="http://uniprot.org/uniprot">
    <accession>A9BU50</accession>
    <name>A9BU50_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Daci_3127</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="4" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Periplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the UPF0065 (bug) family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX35765.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_3127"/>
    <dbReference type="PRIDE" id="A9BU50"/>
    <dbReference type="EnsemblBacteria" id="ABX35765">
        <property type="protein sequence ID" value="ABX35765"/>
        <property type="gene ID" value="Daci_3127"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_3127"/>
    <dbReference type="eggNOG" id="COG3181">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_045683_0_1_4"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0042597">
        <property type="term" value="C:periplasmic space"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.190.150">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005064">
        <property type="entry name" value="BUG"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR042100">
        <property type="entry name" value="Bug_dom1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR42928">
        <property type="entry name" value="PTHR42928"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03401">
        <property type="entry name" value="TctC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF017082">
        <property type="entry name" value="YflP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004418"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00006987"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ABX35765.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="363" mass="38330" checksum="7A925C0E8FFC47BD" modified="2008-01-15" version="1">MVWPIADSVLDSMGRALENGLHNPCHRSHDAFRRRQAMHSLITRIARIIGVWACALVPLCGAAQAFPDRPVTLVLAYSAGSISDVLARSVAQQLSARWKQPVLVDNRPGGNQIIAASLVAKAAADGYTLLLCDDGVFTLNPHLFRKLPYSLEDFAPVADLAQLQMVLSSARQVPAASIAELVALARARPGTLNYGSFGTGNIVHLAMDAFSRMAAIELVHVPYKGYPDAIRDVLANQVQLVLGGIGGPALQYLKSGAMRPLAVTGPSRSPLLPDVPTLAEAGFARLDPQVNFILMAPAGTPPAVVRKINAAAAVIVRQEIAATVLAPNGMRPLGASPDALAASLRQGRAAYAELVKSSGVRLD</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="64" xmlns="http://uniprot.org/uniprot">
    <accession>A9BU99</accession>
    <name>A9BU99_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="7">Inner-membrane translocator</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ordered locus">Daci_1157</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="8" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX33802.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012203088.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_1157"/>
    <dbReference type="PRIDE" id="A9BU99"/>
    <dbReference type="EnsemblBacteria" id="ABX33802">
        <property type="protein sequence ID" value="ABX33802"/>
        <property type="gene ID" value="Daci_1157"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_1157"/>
    <dbReference type="eggNOG" id="COG0559">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_039929_1_1_4"/>
    <dbReference type="OMA" id="VAGIMWG"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0022857">
        <property type="term" value="F:transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001851">
        <property type="entry name" value="ABC_transp_permease"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02653">
        <property type="entry name" value="BPD_transp_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="5 6" id="KW-0472">Membrane</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 6" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="4 6" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="12"/>
            <end position="29"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="34"/>
            <end position="51"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="71"/>
            <end position="92"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="104"/>
            <end position="130"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="157"/>
            <end position="174"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="203"/>
            <end position="222"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="242"/>
            <end position="263"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="270"/>
            <end position="295"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="ABX33802.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="309" mass="32881" checksum="D10EC0A7128C43D9" modified="2008-01-15" version="1">MGFFLETLFGGLMVGTLYALIAIGFVLIFKASGVFNFAQGAMVLFSALAMARFSEWIPKWIGMEPGWFTNLLAICVSLAIMVVVAWVIERLALRHLVNQEPITLLMATLGIAYLLDGLGPMIFGSAVYSINVGMPKDPMFILEGLFQGGVLLSQEDLYAACIAALLVAALSVFFQKTKTGRALRAVADDHQAAQSIGIPLSRIWVIVWSVAGGVALVVGIIWGSKLGVQYSLSLVALKALPVVILGGLTSLPGAIIGGLIIGVGEKLSEVYLGPMVGGGIETWFAYGLALCFLLVRPQGLFGDKIIDRV</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="67" xmlns="http://uniprot.org/uniprot">
    <accession>A9BUF2</accession>
    <name>A9BUF2_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Putative plasmid maintenance system antidote protein, XRE family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_1211</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX33855.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012203141.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_1211"/>
    <dbReference type="PRIDE" id="A9BUF2"/>
    <dbReference type="EnsemblBacteria" id="ABX33855">
        <property type="protein sequence ID" value="ABX33855"/>
        <property type="gene ID" value="Daci_1211"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_1211"/>
    <dbReference type="eggNOG" id="COG3093">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_140230_5_1_4"/>
    <dbReference type="OMA" id="QFWMNLQ"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd00093">
        <property type="entry name" value="HTH_XRE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.260.40">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001387">
        <property type="entry name" value="Cro/C1-type_HTH"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010982">
        <property type="entry name" value="Lambda_DNA-bd_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013430">
        <property type="entry name" value="Toxin_antidote_HigA"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR36924">
        <property type="entry name" value="PTHR36924"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47413">
        <property type="entry name" value="SSF47413"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR02607">
        <property type="entry name" value="antidote_HigA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50943">
        <property type="entry name" value="HTH_CROC1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HTH cro/C1-type" evidence="1">
        <location>
            <begin position="25"/>
            <end position="70"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS50943"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX33855.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="103" mass="11615" checksum="E22447D5F2A64F97" modified="2008-01-15" version="1">MLKNGMRPIHPGEVLREDYLKPMDMSANALARHLHVPASRVNDIVLERRGITADTALRLSRFFGGDAQSWLNLQTAYDLRTAELNAELQASVRQVHPMQLHTA</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="72" xmlns="http://uniprot.org/uniprot">
    <accession>A9BUQ7</accession>
    <name>A9BUQ7_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="7">Putative transcriptional regulator, ModE family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ordered locus">Daci_1521</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="8" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1 4">Belongs to the ModE family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX34165.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_1521"/>
    <dbReference type="PRIDE" id="A9BUQ7"/>
    <dbReference type="EnsemblBacteria" id="ABX34165">
        <property type="protein sequence ID" value="ABX34165"/>
        <property type="gene ID" value="Daci_1521"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_1521"/>
    <dbReference type="eggNOG" id="COG2005">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_087839_0_0_4"/>
    <dbReference type="OMA" id="RTSMRNQ"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003700">
        <property type="term" value="F:DNA-binding transcription factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030151">
        <property type="term" value="F:molybdenum ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015689">
        <property type="term" value="P:molybdate ion transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008995">
        <property type="entry name" value="Mo/tungstate-bd_C_term_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016462">
        <property type="entry name" value="ModE"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004606">
        <property type="entry name" value="Mop_domain"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005116">
        <property type="entry name" value="Transp-assoc_OB_typ1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000847">
        <property type="entry name" value="Tscrpt_reg_HTH_LysR"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036390">
        <property type="entry name" value="WH_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00126">
        <property type="entry name" value="HTH_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03459">
        <property type="entry name" value="TOBE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF005763">
        <property type="entry name" value="Txn_reg_ModE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46785">
        <property type="entry name" value="SSF46785"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50331">
        <property type="entry name" value="SSF50331"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51866">
        <property type="entry name" value="MOP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2 4 5" id="KW-0500">Molybdenum</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0677">Repeat</keyword>
    <keyword evidence="4" id="KW-0813">Transport</keyword>
    <feature type="domain" description="Mop" evidence="6">
        <location>
            <begin position="131"/>
            <end position="200"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00008110"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022505"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022737"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="PIRNR" id="PIRNR005763"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU01213"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="PROSITE" id="PS51866"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="ABX34165.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="278" mass="28421" checksum="F64158DB4B92DFA1" modified="2008-01-15" version="1">MAGMMLRMTAATPASPSDLVPALGHDLADRRIAILRHIAAGHSISQAAREAGVSYKAAWQALDVLTNLAGRALVERSVGGAGGGGARITEAGQSLLAMADALEQARAQVLQRFGGPAGVSPAAPGLGLGLRTSMRNLWPCRVGALQAQGAQVRVWLLPDGGGDASGIAARITEESAQLLGLAPGLPLMALCKAAAVQVLPSAPRSDVHAQANAWPAQVQRVARADRAGPREVVAQLPWGGSGVGYAAEPAEGESWTLRAGRKVWLTVPESAVVLAVAD</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="66" xmlns="http://uniprot.org/uniprot">
    <accession>A9BUS2</accession>
    <name>A9BUS2_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Transcriptional regulator, XRE family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_1536</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX34180.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012203466.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_1536"/>
    <dbReference type="PRIDE" id="A9BUS2"/>
    <dbReference type="EnsemblBacteria" id="ABX34180">
        <property type="protein sequence ID" value="ABX34180"/>
        <property type="gene ID" value="Daci_1536"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_1536"/>
    <dbReference type="eggNOG" id="COG2944">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_144725_0_0_4"/>
    <dbReference type="OMA" id="VQKWEIG"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd00093">
        <property type="entry name" value="HTH_XRE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.260.40">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001387">
        <property type="entry name" value="Cro/C1-type_HTH"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010982">
        <property type="entry name" value="Lambda_DNA-bd_dom_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01381">
        <property type="entry name" value="HTH_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47413">
        <property type="entry name" value="SSF47413"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50943">
        <property type="entry name" value="HTH_CROC1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HTH cro/C1-type" evidence="1">
        <location>
            <begin position="50"/>
            <end position="85"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS50943"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX34180.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="105" mass="11668" checksum="EEF4DE11AECDD69E" modified="2008-01-15" version="1">MTKKYRSDASAAIHETMEALHSVGAIDRQTMREFDAACLTPVVPMPPERIRALREREHLSQPVFALYLNVSKNLVSDWERGVKKPGGPALRLLTVVEKSGIQAIA</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="72" xmlns="http://uniprot.org/uniprot">
    <accession>A9BV12</accession>
    <name>A9BV12_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="4">Adenosylmethionine-8-amino-7-oxononanoate aminotransferase</fullName>
            <ecNumber evidence="4">2.6.1.62</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="4">7,8-diamino-pelargonic acid aminotransferase</fullName>
            <shortName evidence="4">DAPA AT</shortName>
            <shortName evidence="4">DAPA aminotransferase</shortName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="4">7,8-diaminononanoate synthase</fullName>
            <shortName evidence="4">DANS</shortName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="4">Diaminopelargonic acid synthase</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="4" type="primary">bioA</name>
        <name evidence="6" type="ordered locus">Daci_1834</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="7" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="4">Catalyzes the transfer of the alpha-amino group from S-adenosyl-L-methionine (SAM) to 7-keto-8-aminopelargonic acid (KAPA) to form 7,8-diaminopelargonic acid (DAPA). It is the only aminotransferase known to utilize SAM as an amino donor.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="4">
            <text>(8S)-8-amino-7-oxononanoate + S-adenosyl-L-methionine = (7R,8S)-7,8-diammoniononanoate + S-adenosyl-4-methylsulfanyl-2-oxobutanoate</text>
            <dbReference type="Rhea" id="RHEA:16861"/>
            <dbReference type="ChEBI" id="CHEBI:16490"/>
            <dbReference type="ChEBI" id="CHEBI:59789"/>
            <dbReference type="ChEBI" id="CHEBI:149468"/>
            <dbReference type="ChEBI" id="CHEBI:149469"/>
            <dbReference type="EC" id="2.6.1.62"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="1 4">
            <name>pyridoxal 5'-phosphate</name>
            <dbReference type="ChEBI" id="CHEBI:597326"/>
        </cofactor>
    </comment>
    <comment type="pathway">
        <text evidence="4">Cofactor biosynthesis; biotin biosynthesis; 7,8-diaminononanoate from 8-amino-7-oxononanoate (SAM route): step 1/1.</text>
    </comment>
    <comment type="subunit">
        <text evidence="4">Homodimer.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="4">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="4">Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. BioA subfamily.</text>
    </comment>
    <dbReference type="EC" id="2.6.1.62" evidence="4"/>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX34474.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012203759.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_1834"/>
    <dbReference type="PRIDE" id="A9BV12"/>
    <dbReference type="EnsemblBacteria" id="ABX34474">
        <property type="protein sequence ID" value="ABX34474"/>
        <property type="gene ID" value="Daci_1834"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_1834"/>
    <dbReference type="eggNOG" id="COG0161">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_016922_4_3_4"/>
    <dbReference type="OMA" id="VAVKMCL"/>
    <dbReference type="UniPathway" id="UPA00078">
        <property type="reaction ID" value="UER00160"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004015">
        <property type="term" value="F:adenosylmethionine-8-amino-7-oxononanoate transaminase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030170">
        <property type="term" value="F:pyridoxal phosphate binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009102">
        <property type="term" value="P:biotin biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd00610">
        <property type="entry name" value="OAT_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.640.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.1150.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00834">
        <property type="entry name" value="BioA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005814">
        <property type="entry name" value="Aminotrans_3"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005815">
        <property type="entry name" value="BioA"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015424">
        <property type="entry name" value="PyrdxlP-dep_Trfase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015421">
        <property type="entry name" value="PyrdxlP-dep_Trfase_major"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015422">
        <property type="entry name" value="PyrdxlP-dep_Trfase_small"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00202">
        <property type="entry name" value="Aminotran_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53383">
        <property type="entry name" value="SSF53383"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00508">
        <property type="entry name" value="bioA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00600">
        <property type="entry name" value="AA_TRANSFER_CLASS_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4 6" id="KW-0032">Aminotransferase</keyword>
    <keyword evidence="4" id="KW-0093">Biotin biosynthesis</keyword>
    <keyword evidence="4" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="3 4 5" id="KW-0663">Pyridoxal phosphate</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 4" id="KW-0949">S-adenosyl-L-methionine</keyword>
    <keyword evidence="4 6" id="KW-0808">Transferase</keyword>
    <feature type="region of interest" description="Pyridoxal phosphate binding" evidence="4">
        <location>
            <begin position="112"/>
            <end position="113"/>
        </location>
    </feature>
    <feature type="region of interest" description="Pyridoxal phosphate binding" evidence="4">
        <location>
            <begin position="315"/>
            <end position="316"/>
        </location>
    </feature>
    <feature type="binding site" evidence="4">
        <location>
            <position position="54"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="4">
        <location>
            <position position="145"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="4">
        <location>
            <position position="251"/>
        </location>
        <ligand>
            <name>pyridoxal 5'-phosphate</name>
            <dbReference type="ChEBI" id="CHEBI:597326"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="4">
        <location>
            <position position="280"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="4">
        <location>
            <position position="314"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="4">
        <location>
            <position position="400"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="site" description="Participates in the substrate recognition with KAPA and in a stacking interaction with the adenine ring of SAM" evidence="4">
        <location>
            <position position="17"/>
        </location>
    </feature>
    <feature type="modified residue" description="N6-(pyridoxal phosphate)lysine" evidence="4">
        <location>
            <position position="280"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001933"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022691"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022898"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00834"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="RuleBase" id="RU003560"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="ABX34474.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="440" mass="47764" checksum="883BD0D784E0A6AF" modified="2008-01-15" version="1">MTQSLAARSLAAVWHPCTQMKRHEAAPPIAIARAQGPWLHDTEGRRYLDGVSSWWVNLFGHSHPHIQAALTDQLAQLDHVMLAGFTHAPVVELSERLATLTGLGHAFYGSDGASATEIALKMSAHYWRNLGRPAKSRFAGLAGGYHGETVGALAVTDIPLFREAYAPLVRLADTVPSPDARGAQGGESPADVARRAAEGLRQWLEQHHETTAALIVEPLVQCAAGMAMHDPEYLRLARALCDRYEVHLVVDEIAVGFGRTGSMFAHQQAGIRPDFICLSKGLTGGTLALSAVLTTETVYAAFYDDSVARGFLHSHSYTGNPLACRAALATLELFEQTDAINANLALAQRLDGAFAPLNQHARVRHARRQGMIWAWDVQTSLPDFSRRYSAAALERGLLLRPISNTLYAMPPYLLDEEAVQHLAASALAALEDTLAQENHS</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="81" xmlns="http://uniprot.org/uniprot">
    <accession>A9BVE0</accession>
    <name>A9BVE0_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="4 5">Kynureninase</fullName>
            <ecNumber evidence="4 5">3.7.1.3</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="4">L-kynurenine hydrolase</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="4" type="primary">kynU</name>
        <name evidence="7" type="ordered locus">Daci_2164</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="8" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="4 5">Catalyzes the cleavage of L-kynurenine (L-Kyn) and L-3-hydroxykynurenine (L-3OHKyn) into anthranilic acid (AA) and 3-hydroxyanthranilic acid (3-OHAA), respectively.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="5">
            <text>3-hydroxy-L-kynurenine + H2O = 3-hydroxyanthranilate + H(+) + L-alanine</text>
            <dbReference type="Rhea" id="RHEA:25143"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:36559"/>
            <dbReference type="ChEBI" id="CHEBI:57972"/>
            <dbReference type="ChEBI" id="CHEBI:58125"/>
            <dbReference type="EC" id="3.7.1.3"/>
        </reaction>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="4 5">
            <text>H2O + L-kynurenine = anthranilate + H(+) + L-alanine</text>
            <dbReference type="Rhea" id="RHEA:16813"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:16567"/>
            <dbReference type="ChEBI" id="CHEBI:57959"/>
            <dbReference type="ChEBI" id="CHEBI:57972"/>
            <dbReference type="EC" id="3.7.1.3"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="4 5">
            <name>pyridoxal 5'-phosphate</name>
            <dbReference type="ChEBI" id="CHEBI:597326"/>
        </cofactor>
    </comment>
    <comment type="pathway">
        <text evidence="4 5">Amino-acid degradation; L-kynurenine degradation; L-alanine and anthranilate from L-kynurenine: step 1/1.</text>
    </comment>
    <comment type="pathway">
        <text evidence="4 5">Cofactor biosynthesis; NAD(+) biosynthesis; quinolinate from L-kynurenine: step 2/3.</text>
    </comment>
    <comment type="subunit">
        <text evidence="4 5">Homodimer.</text>
    </comment>
    <comment type="similarity">
        <text evidence="4 5">Belongs to the kynureninase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="4">Lacks conserved residue(s) required for the propagation of feature annotation.</text>
    </comment>
    <dbReference type="EC" id="3.7.1.3" evidence="4 5"/>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX34804.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012204087.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_2164"/>
    <dbReference type="PRIDE" id="A9BVE0"/>
    <dbReference type="EnsemblBacteria" id="ABX34804">
        <property type="protein sequence ID" value="ABX34804"/>
        <property type="gene ID" value="Daci_2164"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_2164"/>
    <dbReference type="eggNOG" id="COG3844">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_003433_4_1_4"/>
    <dbReference type="OMA" id="TFPTDGY"/>
    <dbReference type="UniPathway" id="UPA00253">
        <property type="reaction ID" value="UER00329"/>
    </dbReference>
    <dbReference type="UniPathway" id="UPA00334">
        <property type="reaction ID" value="UER00455"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0061981">
        <property type="term" value="F:3-hydroxykynureninase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="RHEA"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030429">
        <property type="term" value="F:kynureninase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030170">
        <property type="term" value="F:pyridoxal phosphate binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0034354">
        <property type="term" value="P:'de novo' NAD biosynthetic process from tryptophan"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043420">
        <property type="term" value="P:anthranilate metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0097053">
        <property type="term" value="P:L-kynurenine catabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniPathway"/>
    </dbReference>
    <dbReference type="GO" id="GO:0019805">
        <property type="term" value="P:quinolinate biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006569">
        <property type="term" value="P:tryptophan catabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.640.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.1150.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01970">
        <property type="entry name" value="Kynureninase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000192">
        <property type="entry name" value="Aminotrans_V_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010111">
        <property type="entry name" value="Kynureninase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015424">
        <property type="entry name" value="PyrdxlP-dep_Trfase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015421">
        <property type="entry name" value="PyrdxlP-dep_Trfase_major"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015422">
        <property type="entry name" value="PyrdxlP-dep_Trfase_small"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR14084">
        <property type="entry name" value="PTHR14084"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00266">
        <property type="entry name" value="Aminotran_5"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF038800">
        <property type="entry name" value="KYNU"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53383">
        <property type="entry name" value="SSF53383"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01814">
        <property type="entry name" value="kynureninase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2 4 5" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="1 4 5" id="KW-0662">Pyridine nucleotide biosynthesis</keyword>
    <keyword evidence="3 4 5" id="KW-0663">Pyridoxal phosphate</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Aminotran_5" evidence="6">
        <location>
            <begin position="78"/>
            <end position="319"/>
        </location>
    </feature>
    <feature type="region of interest" description="Pyridoxal phosphate binding" evidence="4">
        <location>
            <begin position="129"/>
            <end position="132"/>
        </location>
    </feature>
    <feature type="binding site" evidence="4">
        <location>
            <position position="98"/>
        </location>
        <ligand>
            <name>pyridoxal 5'-phosphate</name>
            <dbReference type="ChEBI" id="CHEBI:597326"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="4">
        <location>
            <position position="169"/>
        </location>
        <ligand>
            <name>pyridoxal 5'-phosphate</name>
            <dbReference type="ChEBI" id="CHEBI:597326"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="4">
        <location>
            <position position="198"/>
        </location>
        <ligand>
            <name>pyridoxal 5'-phosphate</name>
            <dbReference type="ChEBI" id="CHEBI:597326"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="4">
        <location>
            <position position="201"/>
        </location>
        <ligand>
            <name>pyridoxal 5'-phosphate</name>
            <dbReference type="ChEBI" id="CHEBI:597326"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="4">
        <location>
            <position position="223"/>
        </location>
        <ligand>
            <name>pyridoxal 5'-phosphate</name>
            <dbReference type="ChEBI" id="CHEBI:597326"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="4">
        <location>
            <position position="253"/>
        </location>
        <ligand>
            <name>pyridoxal 5'-phosphate</name>
            <dbReference type="ChEBI" id="CHEBI:597326"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="4">
        <location>
            <position position="279"/>
        </location>
        <ligand>
            <name>pyridoxal 5'-phosphate</name>
            <dbReference type="ChEBI" id="CHEBI:597326"/>
        </ligand>
    </feature>
    <feature type="modified residue" description="N6-(pyridoxal phosphate)lysine" evidence="4">
        <location>
            <position position="224"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022642"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022898"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01970"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="PIRNR" id="PIRNR038800"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="Pfam" id="PF00266"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="ABX34804.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="434" mass="47323" checksum="72A6ACAAB62042A9" modified="2008-01-15" version="1">MTSLQDCLTLDAQDPLRALRDQFTLPEGVIYLDGNSLGASPRAAAARVAEVVQQEWAQGLIRSWNDAGWISLPQRLGDQFAPWLGVGAGELVFTDTASINLYKVLTAAARIAREDAPQRKRLISERSNFPTDLYIAQSVCQEYGLELVLLEPEEIAGALTDEVAICMLTHVNYRTGAMHDMAAVTAAAQGKGILCVWDLCHSAGAVPVDLKGANADFAIGCSYKYLNGGPGASAFVWANPRLINRFWQPLSGWFGHAEPFKFVPDYHPAQGIQRYLCGTQPMVSLSVLQCGLDVFTAVEPLGGMEALRNKSLALTDLFIALVEERCQGHGLGLATPREHGRRGSQVCLTREEGLGVDGKDSGAYAIVQALIARGVIGDFRKGDGTGLHKDILRFGFTPLYVGFEDVWHAVEHLRQVLESGEWRKPEFNRINAVT</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="60" xmlns="http://uniprot.org/uniprot">
    <accession>A9BVT3</accession>
    <name>A9BVT3_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">NAD_binding_3 domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_2808</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX35446.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012204656.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_2808"/>
    <dbReference type="PRIDE" id="A9BVT3"/>
    <dbReference type="EnsemblBacteria" id="ABX35446">
        <property type="protein sequence ID" value="ABX35446"/>
        <property type="gene ID" value="Daci_2808"/>
    </dbReference>
    <dbReference type="GeneID" id="60687071"/>
    <dbReference type="KEGG" id="dac:Daci_2808"/>
    <dbReference type="eggNOG" id="COG1063">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_159390_0_0_4"/>
    <dbReference type="OMA" id="NTHTLIM"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0050661">
        <property type="term" value="F:NADP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016491">
        <property type="term" value="F:oxidoreductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005106">
        <property type="entry name" value="Asp/hSer_DH_NAD-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036291">
        <property type="entry name" value="NAD(P)-bd_dom_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03447">
        <property type="entry name" value="NAD_binding_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51735">
        <property type="entry name" value="SSF51735"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="NAD_binding_3" evidence="1">
        <location>
            <begin position="10"/>
            <end position="81"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF03447"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX35446.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="123" mass="13208" checksum="9DBEB69977454057" modified="2008-01-15" version="1">MQAFRIVVIGAGQTGTPLLQQLLDAPFVQLLGVADLDLNQPGIALARARGVPVTTRFMELVDAAVDIIIDVTGSLQVRESLRSKMVETGNTHTLIMHEAIALLMMSLSAGRLVVGKHSDLEYS</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="38" xmlns="http://uniprot.org/uniprot">
    <accession>A9BW45</accession>
    <name>A9BW45_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Daci_3223</name>
        <name evidence="2" type="ordered locus">Daci_4108</name>
    </gene>
    <organism evidence="1 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
            <strain evidence="1">SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="1" key="3">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX35861.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX36739.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_3223"/>
    <dbReference type="PRIDE" id="A9BW45"/>
    <dbReference type="EnsemblBacteria" id="ABX35861">
        <property type="protein sequence ID" value="ABX35861"/>
        <property type="gene ID" value="Daci_3223"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="ABX36739">
        <property type="protein sequence ID" value="ABX36739"/>
        <property type="gene ID" value="Daci_4108"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_3223"/>
    <dbReference type="KEGG" id="dac:Daci_4108"/>
    <dbReference type="HOGENOM" id="CLU_2301216_0_0_4"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ABX35861.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX36739.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="100" mass="11151" checksum="E386306CB9AEEA1A" modified="2008-01-15" version="1">MSGRRCDDEDLALFSQKTVEELLQKQRQDIASALAEYDKLRDAMSAQSGCRDGGCLVKRPQGMHTNGGCKCHRDQIVSQRMMYAGQRLADVVRAFVQEAA</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="77" xmlns="http://uniprot.org/uniprot">
    <accession>A9BW92</accession>
    <name>A9BW92_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="11">TonB-dependent siderophore receptor</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="11" type="ordered locus">Daci_3270</name>
    </gene>
    <organism evidence="11 12">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="11 12" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="12">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="12" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="12">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="8">Cell outer membrane</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="1 8">Belongs to the TonB-dependent receptor family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX35908.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012205108.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_3270"/>
    <dbReference type="PRIDE" id="A9BW92"/>
    <dbReference type="EnsemblBacteria" id="ABX35908">
        <property type="protein sequence ID" value="ABX35908"/>
        <property type="gene ID" value="Daci_3270"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_3270"/>
    <dbReference type="eggNOG" id="COG4773">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_008287_9_0_4"/>
    <dbReference type="OMA" id="CDYWCYY"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009279">
        <property type="term" value="C:cell outer membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015344">
        <property type="term" value="F:siderophore uptake transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0038023">
        <property type="term" value="F:signaling receptor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.170.130.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.170.20">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012910">
        <property type="entry name" value="Plug_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037066">
        <property type="entry name" value="Plug_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011662">
        <property type="entry name" value="Secretin/TonB_short_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR039423">
        <property type="entry name" value="TonB-dep_rcpt"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000531">
        <property type="entry name" value="TonB-dep_rcpt_b-brl"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036942">
        <property type="entry name" value="TonB_rcpt_b-brl_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010105">
        <property type="entry name" value="TonB_sidphr_rcpt"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR32552">
        <property type="entry name" value="PTHR32552"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07715">
        <property type="entry name" value="Plug"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07660">
        <property type="entry name" value="STN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00593">
        <property type="entry name" value="TonB_dep_Rec"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00965">
        <property type="entry name" value="STN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01783">
        <property type="entry name" value="TonB-siderophor"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="7" id="KW-0998">Cell outer membrane</keyword>
    <keyword evidence="5 8" id="KW-0472">Membrane</keyword>
    <keyword evidence="6 11" id="KW-0675">Receptor</keyword>
    <keyword evidence="12" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 9" id="KW-0732">Signal</keyword>
    <keyword evidence="4 8" id="KW-0798">TonB box</keyword>
    <keyword evidence="2" id="KW-0813">Transport</keyword>
    <feature type="signal peptide" evidence="9">
        <location>
            <begin position="1"/>
            <end position="46"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5002736111" evidence="9">
        <location>
            <begin position="47"/>
            <end position="831"/>
        </location>
    </feature>
    <feature type="domain" description="STN" evidence="10">
        <location>
            <begin position="80"/>
            <end position="131"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00009810"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022448"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022729"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023077"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023170"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023237"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="RuleBase" id="RU003357"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="10">
        <source>
            <dbReference type="SMART" id="SM00965"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="EMBL" id="ABX35908.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="831" mass="90158" checksum="0132ADA585D1832A" modified="2008-01-15" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="43" xmlns="http://uniprot.org/uniprot">
    <accession>A9BWQ4</accession>
    <name>A9BWQ4_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Daci_3950</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="4" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX36581.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012205775.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_3950"/>
    <dbReference type="PRIDE" id="A9BWQ4"/>
    <dbReference type="EnsemblBacteria" id="ABX36581">
        <property type="protein sequence ID" value="ABX36581"/>
        <property type="gene ID" value="Daci_3950"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_3950"/>
    <dbReference type="eggNOG" id="ENOG50335J5">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_2218786_0_0_4"/>
    <dbReference type="OMA" id="HEAAAKC"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="2">
        <location>
            <begin position="1"/>
            <end position="24"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5002732621" evidence="2">
        <location>
            <begin position="25"/>
            <end position="102"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="24"/>
            <end position="58"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ABX36581.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="102" mass="10780" checksum="FE02310B9F8B59BF" modified="2008-01-15" version="1">MTLAPLRSVSLILAAVFLAAAAQAHDHDHAKAQPDAKAQGASAPLDAHARADMERHRAMAKAHEAAAQCLAAGRDHEQCQKQLQADCKGLALGKFCGMRHAH</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="82" xmlns="http://uniprot.org/uniprot">
    <accession>A9BWY1</accession>
    <name>A9BWY1_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="8">ABC transporter related</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="8" type="ordered locus">Daci_4335</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="9" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX36966.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_4335"/>
    <dbReference type="PRIDE" id="A9BWY1"/>
    <dbReference type="EnsemblBacteria" id="ABX36966">
        <property type="protein sequence ID" value="ABX36966"/>
        <property type="gene ID" value="Daci_4335"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_4335"/>
    <dbReference type="eggNOG" id="COG0410">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_000604_1_2_4"/>
    <dbReference type="OMA" id="IMMQKIM"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015658">
        <property type="term" value="F:branched-chain amino acid transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003593">
        <property type="entry name" value="AAA+_ATPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR030660">
        <property type="entry name" value="ABC_branched_ATPase_LivF/BraG"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003439">
        <property type="entry name" value="ABC_transporter-like_ATP-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017871">
        <property type="entry name" value="ABC_transporter-like_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00005">
        <property type="entry name" value="ABC_tran"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF039137">
        <property type="entry name" value="ABC_branched_ATPase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00382">
        <property type="entry name" value="AAA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00211">
        <property type="entry name" value="ABC_TRANSPORTER_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50893">
        <property type="entry name" value="ABC_TRANSPORTER_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3 6" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="1" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="5" id="KW-0472">Membrane</keyword>
    <keyword evidence="2 6" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4" id="KW-1278">Translocase</keyword>
    <feature type="domain" description="ABC transporter" evidence="7">
        <location>
            <begin position="5"/>
            <end position="236"/>
        </location>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <begin position="37"/>
            <end position="44"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022967"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00434"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="PROSITE" id="PS50893"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="ABX36966.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="236" mass="25517" checksum="BC4661D652B14943" modified="2008-01-15" version="1">MPAMLQLENISTHYGAICAVDSVSLHVNQGEIVSLIGSNGAGKTSLLMTVCGNPRASSGRISFEGEDITQLPSHHIMRKGIAVSPEGRRIFSDLTVTDNLKMGGFFLDKPQIEASIEHVFGLFPRLRERAHQRAGTMSGGEQQMLAIGRALMSKPRLLLLDEPTLGLAPLIIAQIFEIIQTIRTAGVTVFLVEQNANRALQIADRGYVLETGKVVLEDTGANLLTNDAVRRAYLGA</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-01-19" version="62" xmlns="http://uniprot.org/uniprot">
    <accession>A9BX26</accession>
    <name>A9BX26_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="6">Arsenical pump membrane protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="7" type="ordered locus">Daci_4380</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="8" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="6">Involved in arsenical resistance. Thought to form the channel of an arsenite pump.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="6">Cell membrane</location>
            <topology evidence="6">Multi-pass membrane protein</topology>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="6">Belongs to the ArsB family.</text>
    </comment>
    <comment type="caution">
        <text evidence="6">Lacks conserved residue(s) required for the propagation of feature annotation.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX37011.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012206183.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_4380"/>
    <dbReference type="EnsemblBacteria" id="ABX37011">
        <property type="protein sequence ID" value="ABX37011"/>
        <property type="gene ID" value="Daci_4380"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_4380"/>
    <dbReference type="eggNOG" id="COG1055">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_043931_1_0_4"/>
    <dbReference type="OMA" id="SWGYYFK"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015105">
        <property type="term" value="F:arsenite transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046685">
        <property type="term" value="P:response to arsenic-containing substance"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd01118">
        <property type="entry name" value="ArsB_permease"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000802">
        <property type="entry name" value="Arsenical_pump_ArsB"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02040">
        <property type="entry name" value="ArsB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00758">
        <property type="entry name" value="ARSENICPUMP"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00935">
        <property type="entry name" value="2a45"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="6" id="KW-0059">Arsenical resistance</keyword>
    <keyword evidence="2" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="5 6" id="KW-0472">Membrane</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 6" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="4 6" id="KW-1133">Transmembrane helix</keyword>
    <keyword evidence="6" id="KW-0813">Transport</keyword>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="47"/>
            <end position="70"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="91"/>
            <end position="110"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="116"/>
            <end position="140"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="152"/>
            <end position="172"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="178"/>
            <end position="198"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="218"/>
            <end position="240"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="246"/>
            <end position="266"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="278"/>
            <end position="296"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="308"/>
            <end position="329"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="401"/>
            <end position="423"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="RuleBase" id="RU004993"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="ABX37011.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="428" mass="44377" checksum="9CA0B9E375EF0FE2" modified="2008-01-15" version="1">MLAALLIFAATLVLVIWQPAGLGIGWSASLGAIVALALGVVHWADVAVVWGIVWNATATFVAVIIISLLLDEAGFFEWAALHVARWGRASGRRLFAFIVLLGAVVSAVFANDGAALILTPIVMAMLVALGFSAASTLAFVMAAGFIADTASLPLVVSNLVNIVSADFFGIGFNDYASVMVPVNLVAVTASLGVLFLFFRKDLPRTYALERLQPPSAAIRDLATFRAGWAVLALLMLGFFGLEPLGVPVSAVAAACALLLLAVAAHGRVISAGRVLKGAPWQIVVFSLGMYLVVYGLRNAGLTGALARVLEVFAGGGVWGAAIGTGFMSAGLSSVMNNMPTVLVGALSIEHSGATGLVKEAMVYANVIGCDLGPKITPIGSLATLLWLHVLARKGMTIAWGYYLRVGIVLTLPVLAITLVALALRLSVG</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="80" xmlns="http://uniprot.org/uniprot">
    <accession>A9BX51</accession>
    <name>A9BX51_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Transcriptional regulator, LysR family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Daci_4405</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="4" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the LysR transcriptional regulatory family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX37036.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012206208.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_4405"/>
    <dbReference type="PRIDE" id="A9BX51"/>
    <dbReference type="EnsemblBacteria" id="ABX37036">
        <property type="protein sequence ID" value="ABX37036"/>
        <property type="gene ID" value="Daci_4405"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_4405"/>
    <dbReference type="eggNOG" id="COG0583">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_039613_2_0_4"/>
    <dbReference type="OMA" id="QVARMGT"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003700">
        <property type="term" value="F:DNA-binding transcription factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005119">
        <property type="entry name" value="LysR_subst-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000847">
        <property type="entry name" value="Tscrpt_reg_HTH_LysR"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036390">
        <property type="entry name" value="WH_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00126">
        <property type="entry name" value="HTH_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03466">
        <property type="entry name" value="LysR_substrate"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00039">
        <property type="entry name" value="HTHLYSR"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46785">
        <property type="entry name" value="SSF46785"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50931">
        <property type="entry name" value="HTH_LYSR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HTH lysR-type" evidence="2">
        <location>
            <begin position="1"/>
            <end position="58"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00009437"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS50931"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ABX37036.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="298" mass="32691" checksum="28BB058CEFE60519" modified="2008-01-15" version="1">MNWDDTRIFLALTRTPSLRAAARSLGVDQATVGRRLNALEAELGSKLFLRARDGYLLTAAGEAALGAARRMEGAALDLRTRIEGLDDSPAGLVRVTSTDSIATEFLLPAIERLQQRWPGIRVDLEVSTHMLNLGRRQADIAFRNVRPEAPELVVRRVVAWPVGLFASAAYVARFGQPSAEDELRGHHLVVYGPFLEQRPVPTMVDVPARHARIAMAANSSLLVRKAVAAGIGLGEMPVSMGEREGLLRIWPQRQRSDDYEVWQVMHPDLQRTTRVRVTAEFLAQALGQTISPAPAAPG</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="82" xmlns="http://uniprot.org/uniprot">
    <accession>A9BX68</accession>
    <name>A9BX68_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="4">Periplasmic serine endoprotease DegP-like</fullName>
            <ecNumber evidence="4">3.4.21.107</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="6" type="ordered locus">Daci_5515</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="7" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="4">
            <text>Acts on substrates that are at least partially unfolded. The cleavage site P1 residue is normally between a pair of hydrophobic residues, such as Val-|-Val.</text>
            <dbReference type="EC" id="3.4.21.107"/>
        </reaction>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="4">Periplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="4">Belongs to the peptidase S1C family.</text>
    </comment>
    <dbReference type="EC" id="3.4.21.107" evidence="4"/>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX38144.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012207313.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_5515"/>
    <dbReference type="MEROPS" id="S01.477"/>
    <dbReference type="PRIDE" id="A9BX68"/>
    <dbReference type="EnsemblBacteria" id="ABX38144">
        <property type="protein sequence ID" value="ABX38144"/>
        <property type="gene ID" value="Daci_5515"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_5515"/>
    <dbReference type="eggNOG" id="COG0265">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_020120_1_2_4"/>
    <dbReference type="OMA" id="NDTDAFP"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0042597">
        <property type="term" value="C:periplasmic space"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016491">
        <property type="term" value="F:oxidoreductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004252">
        <property type="term" value="F:serine-type endopeptidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006508">
        <property type="term" value="P:proteolysis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.30.42.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001478">
        <property type="entry name" value="PDZ"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036034">
        <property type="entry name" value="PDZ_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011782">
        <property type="entry name" value="Pept_S1C_Do"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009003">
        <property type="entry name" value="Peptidase_S1_PA"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001940">
        <property type="entry name" value="Peptidase_S1C"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13180">
        <property type="entry name" value="PDZ_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00834">
        <property type="entry name" value="PROTEASES2C"/>
    </dbReference>
    <dbReference type="SMART" id="SM00228">
        <property type="entry name" value="PDZ"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50156">
        <property type="entry name" value="SSF50156"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50494">
        <property type="entry name" value="SSF50494"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR02037">
        <property type="entry name" value="degP_htrA_DO"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50106">
        <property type="entry name" value="PDZ"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="6" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="4" id="KW-0645">Protease</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0677">Repeat</keyword>
    <keyword evidence="4" id="KW-0720">Serine protease</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <keyword evidence="4" id="KW-0346">Stress response</keyword>
    <feature type="domain" description="PDZ" evidence="5">
        <location>
            <begin position="279"/>
            <end position="360"/>
        </location>
    </feature>
    <feature type="active site" description="Charge relay system" evidence="3">
        <location>
            <position position="121"/>
        </location>
    </feature>
    <feature type="active site" description="Charge relay system" evidence="3">
        <location>
            <position position="151"/>
        </location>
    </feature>
    <feature type="active site" description="Charge relay system" evidence="3">
        <location>
            <position position="225"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022729"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022737"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="PIRSR" id="PIRSR611782-1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="RuleBase" id="RU364067"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="PROSITE" id="PS50106"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="ABX38144.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="383" mass="39871" checksum="0C6008655073AD68" modified="2008-01-15" version="1">MKRTWLLFSQAVTILVAAYFVVATLQPDWLRRGAVRSNAGIALLEAPATPVGEVSPGSFAPAAKKAAPAVVSINTSKAVRHPRSNDPWFQFFFGDQGTQEQAGLGSGVIISTDGYILTNNHVVEGADDIEVTLTDSRQAKAQVIGTDPETDLAVLKIALDKLPVIVLGNSDQIDVGDRVLAIGNPFGVGQTVTSGIVSALGRSQLGINTFENFIQTDAAINPGNSGGALVDASGNLLGINTAIYSRSGGSMGIGFAIPVSTAKLVLDGIVKDGRVVRGWIGVEPNELSPELAETFGVKADSGVIITGVLQAGPAAQAGMRPGDVIVQVGDKPIRNVSELLTAVAALKPGEAAKFDVRRGEGPVELQITPGLRPAQSAQRMQRR</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="81" xmlns="http://uniprot.org/uniprot">
    <accession>A9BXG3</accession>
    <name>A9BXG3_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Transcriptional regulator, LysR family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Daci_5610</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="4" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the LysR transcriptional regulatory family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX38239.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_5610"/>
    <dbReference type="PRIDE" id="A9BXG3"/>
    <dbReference type="EnsemblBacteria" id="ABX38239">
        <property type="protein sequence ID" value="ABX38239"/>
        <property type="gene ID" value="Daci_5610"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_5610"/>
    <dbReference type="eggNOG" id="COG0583">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_039613_6_2_4"/>
    <dbReference type="OMA" id="FERYGKR"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003700">
        <property type="term" value="F:DNA-binding transcription factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd08413">
        <property type="entry name" value="PBP2_CysB_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037423">
        <property type="entry name" value="CysB_PBP2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005119">
        <property type="entry name" value="LysR_subst-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000847">
        <property type="entry name" value="Tscrpt_reg_HTH_LysR"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036390">
        <property type="entry name" value="WH_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00126">
        <property type="entry name" value="HTH_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03466">
        <property type="entry name" value="LysR_substrate"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00039">
        <property type="entry name" value="HTHLYSR"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46785">
        <property type="entry name" value="SSF46785"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50931">
        <property type="entry name" value="HTH_LYSR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HTH lysR-type" evidence="2">
        <location>
            <begin position="43"/>
            <end position="101"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00009437"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS50931"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ABX38239.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="354" mass="39254" checksum="B4BE0D8745B476CB" modified="2008-01-15" version="1">MPRMSRPWPVRPESLSPSPSFFPFCFCLPQARAAPAPGGALPMNFQQLRYVRETVRRGYSLTEVAHTLHTSQPGVSRQIRELEEELGVEIFIRAGKRLTGLTPPGEALLPIVERLMLEADNLRRVGADFSASEQGRLSIAATHSQARYALPHVVRDFRQRYPQVRLHLHQGSPEQVAQMLRSGEADIGVATEALAGYEGLVALPCYRWTHGVVVPPGHPLLQSQQALTLEALSRFPIITYEQGYTGRAHIDEAFAREGLEPDVVLTAMDADVIKTYVELDMGVGIVASVALDAERDQGLRTLDAGHLFEVNTTRLGLRKGAWLRGYAYAFIETFVPTLTREVVEQAVRQGVEPE</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="77" xmlns="http://uniprot.org/uniprot">
    <accession>A9BXM2</accession>
    <name>A9BXM2_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="7">Binding-protein-dependent transport systems inner membrane component</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ordered locus">Daci_5670</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="8" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="5">Cell membrane</location>
            <topology evidence="5">Multi-pass membrane protein</topology>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="5">Belongs to the binding-protein-dependent transport system permease family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX38298.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012207467.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_5670"/>
    <dbReference type="PRIDE" id="A9BXM2"/>
    <dbReference type="EnsemblBacteria" id="ABX38298">
        <property type="protein sequence ID" value="ABX38298"/>
        <property type="gene ID" value="Daci_5670"/>
    </dbReference>
    <dbReference type="GeneID" id="60690033"/>
    <dbReference type="KEGG" id="dac:Daci_5670"/>
    <dbReference type="eggNOG" id="COG0601">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_036879_1_0_4"/>
    <dbReference type="OMA" id="RKEWYAN"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0055085">
        <property type="term" value="P:transmembrane transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd06261">
        <property type="entry name" value="TM_PBP2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.3720.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045621">
        <property type="entry name" value="BPD_transp_1_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000515">
        <property type="entry name" value="MetI-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035906">
        <property type="entry name" value="MetI-like_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00528">
        <property type="entry name" value="BPD_transp_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF19300">
        <property type="entry name" value="BPD_transp_1_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF161098">
        <property type="entry name" value="SSF161098"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50928">
        <property type="entry name" value="ABC_TM1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4 5" id="KW-0472">Membrane</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 5" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="3 5" id="KW-1133">Transmembrane helix</keyword>
    <keyword evidence="5" id="KW-0813">Transport</keyword>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="103"/>
            <end position="123"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="135"/>
            <end position="163"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="188"/>
            <end position="205"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="246"/>
            <end position="272"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="292"/>
            <end position="315"/>
        </location>
    </feature>
    <feature type="domain" description="ABC transmembrane type-1" evidence="6">
        <location>
            <begin position="99"/>
            <end position="315"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="RuleBase" id="RU363032"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="PROSITE" id="PS50928"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="ABX38298.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="325" mass="34935" checksum="4F4A6F5374D941A1" modified="2008-01-15" version="1">MAFLRTLLKRLLQGLALVLAVVVLNFMLVHAAPGDPVETIAGASGGMEPELMAELRTRYGLDRPLPVQLGIYLARVASGDLGYSYFFNLPVAQMIAERVPATLLLVLAAVLTAFVVGTLLGVLSSRRPNGLLSQCITVLSLVGFAAPVFWTGMLLVLAFASWWPVLPVSGMRSADAAGGAGLADLLDVARHLVLPALTLALVYLAQYSRLSRSSMLDVLGADYIRTARAKGLAEHVVLYRHALRNALLPVVTMLGLQFGNVMAGAIIVETVFNWPGLGRLAFDSVLRRDYPTILGVLLFSSIVVVVMNLVTDLCYRLIDPRIKAA</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="74" xmlns="http://uniprot.org/uniprot">
    <accession>A9BXP9</accession>
    <name>A9BXP9_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="10">General secretion pathway protein D</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="10" type="ordered locus">Daci_5697</name>
    </gene>
    <organism evidence="10 11">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="10 11" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="11">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="11" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="11">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="6">Cell outer membrane</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="1">Belongs to the bacterial secretin family. GSP D subfamily.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX38325.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012207494.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_5697"/>
    <dbReference type="PRIDE" id="A9BXP9"/>
    <dbReference type="EnsemblBacteria" id="ABX38325">
        <property type="protein sequence ID" value="ABX38325"/>
        <property type="gene ID" value="Daci_5697"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_5697"/>
    <dbReference type="eggNOG" id="COG1450">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="eggNOG" id="COG4796">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_006756_1_1_4"/>
    <dbReference type="OMA" id="YAVVEMD"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009279">
        <property type="term" value="C:cell outer membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
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        <property type="term" value="C:integral component of membrane"/>
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        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
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        <property type="term" value="C:type II protein secretion system complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
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        <property type="term" value="P:protein secretion by the type II secretion system"/>
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        <property type="match status" value="3"/>
    </dbReference>
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        <property type="entry name" value="GspD/PilQ"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005644">
        <property type="entry name" value="NolW-like"/>
    </dbReference>
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        <property type="entry name" value="NolW-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004846">
        <property type="entry name" value="T2SS/T3SS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013356">
        <property type="entry name" value="T2SS_GspD"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00263">
        <property type="entry name" value="Secretin"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03958">
        <property type="entry name" value="Secretin_N"/>
        <property type="match status" value="3"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00811">
        <property type="entry name" value="BCTERIALGSPD"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR02517">
        <property type="entry name" value="type_II_gspD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2" id="KW-0472">Membrane</keyword>
    <keyword evidence="5" id="KW-0653">Protein transport</keyword>
    <keyword evidence="11" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4 8" id="KW-0732">Signal</keyword>
    <keyword evidence="3" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="2" id="KW-1134">Transmembrane beta strand</keyword>
    <keyword evidence="6" id="KW-0813">Transport</keyword>
    <feature type="signal peptide" evidence="8">
        <location>
            <begin position="1"/>
            <end position="32"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5002736139" evidence="8">
        <location>
            <begin position="33"/>
            <end position="787"/>
        </location>
    </feature>
    <feature type="domain" description="Secretin_N" evidence="9">
        <location>
            <begin position="149"/>
            <end position="207"/>
        </location>
    </feature>
    <feature type="domain" description="Secretin_N" evidence="9">
        <location>
            <begin position="212"/>
            <end position="298"/>
        </location>
    </feature>
    <feature type="domain" description="Secretin_N" evidence="9">
        <location>
            <begin position="308"/>
            <end position="436"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="7">
        <location>
            <begin position="334"/>
            <end position="405"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="7">
        <location>
            <begin position="767"/>
            <end position="787"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00006980"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022452"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022729"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022927"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="RuleBase" id="RU004004"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="9">
        <source>
            <dbReference type="Pfam" id="PF03958"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="EMBL" id="ABX38325.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="787" mass="81890" checksum="CC8041EB81D7EBEC" modified="2008-01-15" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="66" xmlns="http://uniprot.org/uniprot">
    <accession>A9BXY0</accession>
    <name>A9BXY0_DELAS</name>
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        <submittedName>
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        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ordered locus">Daci_1271</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
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            <taxon>Comamonadaceae</taxon>
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        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="7" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX33915.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_1271"/>
    <dbReference type="PRIDE" id="A9BXY0"/>
    <dbReference type="EnsemblBacteria" id="ABX33915">
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        <property type="gene ID" value="Daci_1271"/>
    </dbReference>
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    <dbReference type="eggNOG" id="COG4535">
        <property type="taxonomic scope" value="Bacteria"/>
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    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0050660">
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        <property type="project" value="InterPro"/>
    </dbReference>
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        <property type="match status" value="1"/>
    </dbReference>
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    </dbReference>
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    </dbReference>
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    </dbReference>
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        <property type="entry name" value="FAD-bd_PCMH_sub2"/>
    </dbReference>
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        <property type="entry name" value="Ion_transp-like_CBS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005170">
        <property type="entry name" value="Transptr-assoc_dom"/>
    </dbReference>
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        <property type="match status" value="2"/>
    </dbReference>
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        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00116">
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        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SMART" id="SM01091">
        <property type="entry name" value="CorC_HlyC"/>
        <property type="match status" value="1"/>
    </dbReference>
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        <property type="entry name" value="SSF54631"/>
        <property type="match status" value="1"/>
    </dbReference>
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        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51371">
        <property type="entry name" value="CBS"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2 3" id="KW-0129">CBS domain</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0677">Repeat</keyword>
    <feature type="domain" description="CBS" evidence="5">
        <location>
            <begin position="86"/>
            <end position="146"/>
        </location>
    </feature>
    <feature type="domain" description="CBS" evidence="5">
        <location>
            <begin position="149"/>
            <end position="206"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="4">
        <location>
            <begin position="1"/>
            <end position="28"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022737"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023122"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00703"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="PROSITE" id="PS51371"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="ABX33915.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="307" mass="34160" checksum="E20EB1FE8A115419" modified="2008-01-15" version="1">MQLVSLPHVLHSKTVSDPHPARSSEKESKRSFLQKVAEFIHPAPDSPDELIETLADAEDNQVIGPESRVMLERVIRMADMTAGDVMVAAPRMDLVNIDAPFDELLHQVITTAHSRFPVYQGERENIIGILLAKDLLKLQRSPDLNIRALLRPAAFVPESKGLNDLLREFRGNRNHLAVVIDEFGRVAGLVTIEDVLEEIVGEIEDEFDIPEDEGDIFALADNSYRVAGDTTIEHVNETFEVALHARDPDDEFDTIGGLIAHEMGHVPKRGEQIHLAGLEFTVLHTKGGAVRWFKVVRDPAADSLLRS</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="32" xmlns="http://uniprot.org/uniprot">
    <accession>A9BYB9</accession>
    <name>A9BYB9_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_1614</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX34258.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012203543.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_1614"/>
    <dbReference type="PRIDE" id="A9BYB9"/>
    <dbReference type="EnsemblBacteria" id="ABX34258">
        <property type="protein sequence ID" value="ABX34258"/>
        <property type="gene ID" value="Daci_1614"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_1614"/>
    <dbReference type="HOGENOM" id="CLU_1029430_0_0_4"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="28"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX34258.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="272" mass="28831" checksum="C1256272EB3330FD" modified="2008-01-15" version="1">MNAVAEKPKARRQAGAVASSSTATPAVHASAPTFEESCALFRMASQALYEASRTDEPHGFSGESDRLLRIGSGIALQASTANKVEHESAAYDVAACINAARLVPGDTESAARTAFIATAAAALSQVTGDAPEQIVFTDVKRPQKRGKHPFEPTEKEIEDTHFDAMCWTGCAKAVLEFYAKHSDSDLVLGISDLVAMYYQKSEAEGDEMGPGTRGDLITGPLPAMGVRIGAALEVVYKVNDDDIMLHSAAYLLERAMHIAGGELLEASRDGDA</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="73" xmlns="http://uniprot.org/uniprot">
    <accession>A9BYC8</accession>
    <name>A9BYC8_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Helicase domain protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ordered locus">Daci_1623</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="5" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX34267.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_1623"/>
    <dbReference type="PRIDE" id="A9BYC8"/>
    <dbReference type="EnsemblBacteria" id="ABX34267">
        <property type="protein sequence ID" value="ABX34267"/>
        <property type="gene ID" value="Daci_1623"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_1623"/>
    <dbReference type="eggNOG" id="COG1061">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_014765_3_1_4"/>
    <dbReference type="OMA" id="AHYNSFR"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004386">
        <property type="term" value="F:helicase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016787">
        <property type="term" value="F:hydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006935">
        <property type="entry name" value="Helicase/UvrB_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014001">
        <property type="entry name" value="Helicase_ATP-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001650">
        <property type="entry name" value="Helicase_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00271">
        <property type="entry name" value="Helicase_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04851">
        <property type="entry name" value="ResIII"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00487">
        <property type="entry name" value="DEXDc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00490">
        <property type="entry name" value="HELICc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51192">
        <property type="entry name" value="HELICASE_ATP_BIND_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51194">
        <property type="entry name" value="HELICASE_CTER"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="4" id="KW-0347">Helicase</keyword>
    <keyword evidence="4" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="4" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Helicase ATP-binding" evidence="2">
        <location>
            <begin position="19"/>
            <end position="166"/>
        </location>
    </feature>
    <feature type="domain" description="Helicase C-terminal" evidence="3">
        <location>
            <begin position="213"/>
            <end position="368"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="356"/>
            <end position="377"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS51192"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="PROSITE" id="PS51194"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="ABX34267.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="502" mass="56383" checksum="2EC6790A9BCA9C50" modified="2008-01-15" version="1">MSQLVLRDYQVNSVEGLRDGFRAKHTRQVLTLPTGGGKSRVMEHMIHGVQAKGTRIMFVCERRVLVEQFSKHLDRAGIDHGVLMAKHWRFRPQCQVQIASVQTLERMKTLPKVDLIFIDEVHACMRQFVINLMLAQPDLRIIGATATPFHPALGRHFTNVVSTITMSRLVDEGHLVPFRVFVAREVSTEGLKVVAGEWKKDDLEQRGRQIVGDVVADYVRISHEVFGEYRKTICFSCGVEHGAELAQRFIDAGVNAVQISSEDAEEYRDQVLEEFARPDTDLKVVISVAILSRGFDQTDVEHVILARPLKKSFSEHVQMVGRGARPHAGKQFCVIQDHSGNWLRFQEDWEKLFNDGVESLGPGTDTKPRKEPTPKEKEAAKCPKCSAFWPPKTDTCSNCGHVRAKHNAVETVAGEVVEVGASKKPKAEKFSAEYKRDFYAQLLGNALQRGHNPGSAYHRYVEKFGVGPSGPKPEPAPVGEEVRRWLVSRNIRNAADRKRVAA</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-01-19" version="59" xmlns="http://uniprot.org/uniprot">
    <accession>A9BYG6</accession>
    <name>A9BYG6_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="5 7">Muconolactone Delta-isomerase</fullName>
            <shortName evidence="7">MIase</shortName>
            <ecNumber evidence="5 7">5.3.3.4</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="9" type="ordered locus">Daci_1869</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="9 10" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="10" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="1 7">
            <text>(S)-muconolactone = (4,5-dihydro-5-oxofuran-2-yl)-acetate</text>
            <dbReference type="Rhea" id="RHEA:12348"/>
            <dbReference type="ChEBI" id="CHEBI:58425"/>
            <dbReference type="ChEBI" id="CHEBI:58736"/>
            <dbReference type="EC" id="5.3.3.4"/>
        </reaction>
    </comment>
    <comment type="pathway">
        <text evidence="2 7">Aromatic compound metabolism; beta-ketoadipate pathway; 5-oxo-4,5-dihydro-2-furylacetate from catechol: step 3/3.</text>
    </comment>
    <comment type="subunit">
        <text evidence="4">Homodecamer.</text>
    </comment>
    <comment type="similarity">
        <text evidence="3 7">Belongs to the muconolactone Delta-isomerase family.</text>
    </comment>
    <dbReference type="EC" id="5.3.3.4" evidence="5 7"/>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX34509.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012203794.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_1869"/>
    <dbReference type="EnsemblBacteria" id="ABX34509">
        <property type="protein sequence ID" value="ABX34509"/>
        <property type="gene ID" value="Daci_1869"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_1869"/>
    <dbReference type="eggNOG" id="COG4829">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_080702_2_0_4"/>
    <dbReference type="OMA" id="WRVPGRN"/>
    <dbReference type="UniPathway" id="UPA00157">
        <property type="reaction ID" value="UER00260"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016159">
        <property type="term" value="F:muconolactone delta-isomerase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0042952">
        <property type="term" value="P:beta-ketoadipate pathway"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniPathway"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011008">
        <property type="entry name" value="Dimeric_a/b-barrel"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR026029">
        <property type="entry name" value="MLI_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003464">
        <property type="entry name" value="Muconolactone_d_Isoase"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02426">
        <property type="entry name" value="MIase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF001486">
        <property type="entry name" value="CatC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54909">
        <property type="entry name" value="SSF54909"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR03221">
        <property type="entry name" value="muco_delta"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="6 7" id="KW-0058">Aromatic hydrocarbons catabolism</keyword>
    <keyword evidence="7 9" id="KW-0413">Isomerase</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="MIase" evidence="8">
        <location>
            <begin position="1"/>
            <end position="89"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001739"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00005193"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00010882"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00011365"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00012070"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022797"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="PIRNR" id="PIRNR001486"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="Pfam" id="PF02426"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="ABX34509.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="92" mass="10567" checksum="8E3828333D274F70" modified="2008-01-15" version="1">MLYLVRMDVKIPHDLPADVAAEIKAREKAYSQQLQHDGRWPHIWRVVGEYANYSVFDVASNDELHELLQGLPLFPYMDIQVTPLARHPSAIA</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="34" xmlns="http://uniprot.org/uniprot">
    <accession>A9BYN3</accession>
    <name>A9BYN3_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Daci_1936</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="2" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX34576.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_1936"/>
    <dbReference type="PRIDE" id="A9BYN3"/>
    <dbReference type="EnsemblBacteria" id="ABX34576">
        <property type="protein sequence ID" value="ABX34576"/>
        <property type="gene ID" value="Daci_1936"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_1936"/>
    <dbReference type="HOGENOM" id="CLU_2842540_0_0_4"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ABX34576.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="65" mass="7629" checksum="175E87E046723C4D" modified="2008-01-15" version="1">MSTTPAHMVIQFWVVSALYASECHWLSWLYRRDSTLGRVRRYANAARARAVVVYDRVLNQEDLID</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="68" xmlns="http://uniprot.org/uniprot">
    <accession>A9BYW2</accession>
    <name>A9BYW2_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Glyoxalase/bleomycin resistance protein/dioxygenase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Daci_2217</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="4" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX34857.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012204140.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_2217"/>
    <dbReference type="PRIDE" id="A9BYW2"/>
    <dbReference type="EnsemblBacteria" id="ABX34857">
        <property type="protein sequence ID" value="ABX34857"/>
        <property type="gene ID" value="Daci_2217"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_2217"/>
    <dbReference type="eggNOG" id="COG0346">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_084417_1_0_4"/>
    <dbReference type="OMA" id="QHIAFQV"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051213">
        <property type="term" value="F:dioxygenase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.10.180.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029068">
        <property type="entry name" value="Glyas_Bleomycin-R_OHBP_Dase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004360">
        <property type="entry name" value="Glyas_Fos-R_dOase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037523">
        <property type="entry name" value="VOC"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00903">
        <property type="entry name" value="Glyoxalase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54593">
        <property type="entry name" value="SSF54593"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51819">
        <property type="entry name" value="VOC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-0223">Dioxygenase</keyword>
    <keyword evidence="3" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="VOC" evidence="2">
        <location>
            <begin position="20"/>
            <end position="152"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="171"/>
            <end position="209"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="171"/>
            <end position="189"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS51819"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ABX34857.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="209" mass="23892" checksum="BAA15A396A45403A" modified="2008-01-15" version="1">MNTSARPDLSTLPPPAAVQQLHHYAYKARDAEETRHFYEDILGLPLYHIIQSDYVPSTGEYCPYTHFFFRLKDGSFIAFFDIGDDEKALPSPNTPLWINHIAFRVDTVEELENTKARLVAHGIEVLGVTDHHIFKSIYFFDPNGIRLELSAQLADEVQMARESTTAHARLNEWTARKEQWRKERAEGKAAQPLKPQSNDRPEFVPDAAA</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="74" xmlns="http://uniprot.org/uniprot">
    <accession>A9BYZ2</accession>
    <name>A9BYZ2_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Transcriptional regulator, Fis family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Daci_2247</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="4" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX34887.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012204170.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_2247"/>
    <dbReference type="PRIDE" id="A9BYZ2"/>
    <dbReference type="EnsemblBacteria" id="ABX34887">
        <property type="protein sequence ID" value="ABX34887"/>
        <property type="gene ID" value="Daci_2247"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_2247"/>
    <dbReference type="eggNOG" id="COG2204">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="eggNOG" id="COG3284">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_690669_0_0_4"/>
    <dbReference type="OMA" id="ATLHRKM"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043565">
        <property type="term" value="F:sequence-specific DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.450.40">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029016">
        <property type="entry name" value="GAF-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009057">
        <property type="entry name" value="Homeobox-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002197">
        <property type="entry name" value="HTH_Fis"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02954">
        <property type="entry name" value="HTH_8"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR01590">
        <property type="entry name" value="HTHFIS"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46689">
        <property type="entry name" value="SSF46689"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="1" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HTH_8" evidence="2">
        <location>
            <begin position="342"/>
            <end position="379"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF02954"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ABX34887.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="388" mass="41587" checksum="181A84D37592A10C" modified="2008-01-15" version="1">MFALSPDAAQPCPADPRHQQVARARSLVFGDQALAGSPPGIAPWLWRSWQRCLAAGRRPDERVVYEALGPHALRQTRDGHEVLLQAARPVMAQLVGAVGAMHYFSLLTDARGTVLEVQGPLERSDIRVQAIARVGVDLSEQGVGTTAIGAALAEHGPVWLHRAEHFFEANRHYSCAGAPLSGPDGRCLGMLDITGVDVPERPELMHLALRCARAIEDRLLRALPHALLLHLNWPGGPLGQEGEGLLAVDAEGHVAGSNTLARQLVPQPLSLPGQPLHCSELLAMPWTALVDHARQRPNEPLRLPLWSGLRLQALVQPGPQLRQLLPALGTAALAAAAQPSPLRASEGVLIDQALQDAQGNVTRAARALGISRATLYRKLGARKPHTAT</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="68" xmlns="http://uniprot.org/uniprot">
    <accession>A9BZ06</accession>
    <name>A9BZ06_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="7">ABC transporter related</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ordered locus">Daci_2261</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="8" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX34901.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_2261"/>
    <dbReference type="PRIDE" id="A9BZ06"/>
    <dbReference type="EnsemblBacteria" id="ABX34901">
        <property type="protein sequence ID" value="ABX34901"/>
        <property type="gene ID" value="Daci_2261"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_2261"/>
    <dbReference type="eggNOG" id="COG1122">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_000604_1_2_4"/>
    <dbReference type="OMA" id="FWRDPRA"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003593">
        <property type="entry name" value="AAA+_ATPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003439">
        <property type="entry name" value="ABC_transporter-like_ATP-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00005">
        <property type="entry name" value="ABC_tran"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00382">
        <property type="entry name" value="AAA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="1" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="5" id="KW-0472">Membrane</keyword>
    <keyword evidence="2" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4" id="KW-1278">Translocase</keyword>
    <feature type="domain" description="AAA" evidence="6">
        <location>
            <begin position="25"/>
            <end position="214"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022967"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="SMART" id="SM00382"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="ABX34901.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="217" mass="23624" checksum="67DAD08325017729" modified="2008-01-15" version="1">MVSAQALRFGQPGLLLWDGASHDWPVGLCLVRGGEGCGKTSLLQMLAGQLPLQGGRLAYPQQPDPSQRPALFWRDPRAELSNAERARPAQDWVQAQRQLYPAWSEAAWQAHADGLGLEPHLHKPLLALSTGSLRKLWMAAGWASGVPLLLIDEPLAALDRGSMDHVQRTMAGLNRAGQQSAPVAGHGPRCVIVAHWDEMQGVAWDDVLDLPDQPPLR</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="71" xmlns="http://uniprot.org/uniprot">
    <accession>A9BZ17</accession>
    <name>A9BZ17_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="6 10">Meso-diaminopimelate D-dehydrogenase</fullName>
            <shortName evidence="10">DAPDH</shortName>
            <shortName evidence="10">Meso-DAP dehydrogenase</shortName>
            <ecNumber evidence="5 10">1.4.1.16</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="13" type="ordered locus">Daci_2479</name>
    </gene>
    <organism evidence="13 14">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="13 14" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="14">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="14" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="14">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="10">Catalyzes the reversible NADPH-dependent reductive amination of L-2-amino-6-oxopimelate, the acyclic form of L-tetrahydrodipicolinate, to generate the meso compound, D,L-2,6-diaminopimelate.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1 10">
            <text>H2O + meso-2,6-diaminoheptanedioate + NADP(+) = (S)-2-amino-6-oxoheptanedioate + H(+) + NADPH + NH4(+)</text>
            <dbReference type="Rhea" id="RHEA:13561"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:28938"/>
            <dbReference type="ChEBI" id="CHEBI:57783"/>
            <dbReference type="ChEBI" id="CHEBI:57791"/>
            <dbReference type="ChEBI" id="CHEBI:58349"/>
            <dbReference type="ChEBI" id="CHEBI:58556"/>
            <dbReference type="EC" id="1.4.1.16"/>
        </reaction>
    </comment>
    <comment type="pathway">
        <text evidence="2 10">Amino-acid biosynthesis; L-lysine biosynthesis via DAP pathway; DL-2,6-diaminopimelate from (S)-tetrahydrodipicolinate: step 1/1.</text>
    </comment>
    <comment type="subunit">
        <text evidence="4 10">Homodimer.</text>
    </comment>
    <comment type="similarity">
        <text evidence="3 10">Belongs to the diaminopimelate dehydrogenase family.</text>
    </comment>
    <dbReference type="EC" id="1.4.1.16" evidence="5 10"/>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX35117.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012204398.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_2479"/>
    <dbReference type="PRIDE" id="A9BZ17"/>
    <dbReference type="EnsemblBacteria" id="ABX35117">
        <property type="protein sequence ID" value="ABX35117"/>
        <property type="gene ID" value="Daci_2479"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_2479"/>
    <dbReference type="eggNOG" id="COG2344">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_055796_0_0_4"/>
    <dbReference type="OMA" id="WDPGLFS"/>
    <dbReference type="UniPathway" id="UPA00034">
        <property type="reaction ID" value="UER00026"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0047850">
        <property type="term" value="F:diaminopimelate dehydrogenase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000166">
        <property type="term" value="F:nucleotide binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0019877">
        <property type="term" value="P:diaminopimelate biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009089">
        <property type="term" value="P:lysine biosynthetic process via diaminopimelate"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010190">
        <property type="entry name" value="Diaminopimelate_DH_Ddh"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR032094">
        <property type="entry name" value="Meso-DAP_DH_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036291">
        <property type="entry name" value="NAD(P)-bd_dom_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF16654">
        <property type="entry name" value="DAPDH_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF025648">
        <property type="entry name" value="DDH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51735">
        <property type="entry name" value="SSF51735"/>
        <property type="match status" value="1"/>
    </dbReference>
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        <property type="entry name" value="DAP-DH"/>
        <property type="match status" value="1"/>
    </dbReference>
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    <keyword evidence="10" id="KW-0028">Amino-acid biosynthesis</keyword>
    <keyword evidence="8 10" id="KW-0220">Diaminopimelate biosynthesis</keyword>
    <keyword evidence="10" id="KW-0457">Lysine biosynthesis</keyword>
    <keyword evidence="7 10 11" id="KW-0521">NADP</keyword>
    <keyword evidence="11" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="9 10 13" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="14" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="DAPDH_C" evidence="12">
        <location>
            <begin position="128"/>
            <end position="281"/>
        </location>
    </feature>
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        <location>
            <begin position="40"/>
            <end position="42"/>
        </location>
        <ligand>
            <name>NADP(+)</name>
            <dbReference type="ChEBI" id="CHEBI:58349"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="11">
        <location>
            <begin position="75"/>
            <end position="78"/>
        </location>
        <ligand>
            <name>NADP(+)</name>
            <dbReference type="ChEBI" id="CHEBI:58349"/>
        </ligand>
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        <location>
            <begin position="98"/>
            <end position="100"/>
        </location>
        <ligand>
            <name>NADP(+)</name>
            <dbReference type="ChEBI" id="CHEBI:58349"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="11">
        <location>
            <begin position="127"/>
            <end position="131"/>
        </location>
        <ligand>
            <name>NADP(+)</name>
            <dbReference type="ChEBI" id="CHEBI:58349"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="11">
        <location>
            <position position="154"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
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        <location>
            <position position="179"/>
        </location>
        <ligand>
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        </ligand>
    </feature>
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        </location>
        <ligand>
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    </feature>
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        <location>
            <position position="255"/>
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        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
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        <location>
            <position position="282"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001376"/>
        </source>
    </evidence>
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        <source>
            <dbReference type="ARBA" id="ARBA00004896"/>
        </source>
    </evidence>
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        <source>
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        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
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        </source>
    </evidence>
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        <source>
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        </source>
    </evidence>
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        <source>
            <dbReference type="ARBA" id="ARBA00021654"/>
        </source>
    </evidence>
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        </source>
    </evidence>
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        <source>
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        </source>
    </evidence>
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        <source>
            <dbReference type="ARBA" id="ARBA00023002"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="PIRNR" id="PIRNR025648"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="PIRSR" id="PIRSR025648-1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="12">
        <source>
            <dbReference type="Pfam" id="PF16654"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="13">
        <source>
            <dbReference type="EMBL" id="ABX35117.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="14">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="332" mass="35865" checksum="64EC05EF9A08CC6D" modified="2008-01-15" version="1">MDHRSTAPIRIAIVGHGNLGRGVEAAIARNPDMALAGIYTRRDPARLRPLQPGTPVHGMDSLLAHRAGIDVLVLCGGSKDDLPQQSPALAAHFSLVDSFDTHARIPEHFDRVDAAARAAGTTALISAGWDPGMFSLQRLMGEALLPDGATYTFWGKGLSQGHSDAIRRIPGVAGGVQYTIPVDEAVQRVRSGVRPELSARERHRRECFVVLEQGANADGVRQAITGMPHYFDEYDTTVHFISAEELARDHAAMPHGGFVIRSGRSSQGLHHSIEYRLQLDSNPEFTASVLVAYARAVHRLQQSGQTGCKTVFDVAPGLLSPRSAAELRAELL</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="59" xmlns="http://uniprot.org/uniprot">
    <accession>A9BZ30</accession>
    <name>A9BZ30_DELAS</name>
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        <submittedName>
            <fullName evidence="2">Alpha/beta hydrolase fold</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_2492</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
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        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
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                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
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            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX35130.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_2492"/>
    <dbReference type="PRIDE" id="A9BZ30"/>
    <dbReference type="EnsemblBacteria" id="ABX35130">
        <property type="protein sequence ID" value="ABX35130"/>
        <property type="gene ID" value="Daci_2492"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_2492"/>
    <dbReference type="eggNOG" id="COG2267">
        <property type="taxonomic scope" value="Bacteria"/>
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    <dbReference type="OMA" id="CDLVGFS"/>
    <dbReference type="Proteomes" id="UP000000784">
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    </dbReference>
    <dbReference type="GO" id="GO:0016787">
        <property type="term" value="F:hydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
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        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029058">
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    </dbReference>
    <dbReference type="InterPro" id="IPR000073">
        <property type="entry name" value="AB_hydrolase_1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000639">
        <property type="entry name" value="Epox_hydrolase-like"/>
    </dbReference>
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        <property type="entry name" value="Abhydrolase_6"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00111">
        <property type="entry name" value="ABHYDROLASE"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00412">
        <property type="entry name" value="EPOXHYDRLASE"/>
    </dbReference>
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    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="AB hydrolase-1" evidence="1">
        <location>
            <begin position="47"/>
            <end position="288"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF12697"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX35130.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="295" mass="31674" checksum="0F3EBCDB1B9A961B" modified="2008-01-15" version="1">MVNTPAAIERLRAQARRLTTPLSAAQPEDGHMVWHVWGEVRAGELPVVMLHGGSGSWTHWLRCMDALLAQGRQLWIPDLPGFGDSDGVPGGQDADTLVEPLRQGLRQLLADGGAPAAPLCDLVGFSFGGMTAGMLAAADGTLARRLVLAGAPGMGVGKGLAVRLKGWRHLATPEAQAVAHRYNLQALMLHDASLIDEDTLALHVLNVERDRLPRRRLSHTDVLARALQAVDGPVWAIYGEHDALYPGPMMQELAQAFARHARDFRGLALVPGAGHWVMHERPDAFVAALTAALDS</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="78" xmlns="http://uniprot.org/uniprot">
    <accession>A9BZ37</accession>
    <name>A9BZ37_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="8">Gluconate 2-dehydrogenase (Acceptor)</fullName>
            <ecNumber evidence="8">1.1.99.3</ecNumber>
        </submittedName>
    </protein>
    <gene>
        <name evidence="8" type="ordered locus">Daci_2499</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
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        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
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                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
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            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="9" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EC" id="1.1.99.3" evidence="8"/>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX35137.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012204418.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_2499"/>
    <dbReference type="PRIDE" id="A9BZ37"/>
    <dbReference type="EnsemblBacteria" id="ABX35137">
        <property type="protein sequence ID" value="ABX35137"/>
        <property type="gene ID" value="Daci_2499"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_2499"/>
    <dbReference type="eggNOG" id="COG2010">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="eggNOG" id="COG3258">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_383431_0_0_4"/>
    <dbReference type="OMA" id="KTGQNRF"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009055">
        <property type="term" value="F:electron transfer activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0033717">
        <property type="term" value="F:gluconate 2-dehydrogenase (acceptor) activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0020037">
        <property type="term" value="F:heme binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.760.10">
        <property type="match status" value="5"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009056">
        <property type="entry name" value="Cyt_c-like_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036909">
        <property type="entry name" value="Cyt_c-like_dom_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00034">
        <property type="entry name" value="Cytochrom_C"/>
        <property type="match status" value="3"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46626">
        <property type="entry name" value="SSF46626"/>
        <property type="match status" value="5"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51007">
        <property type="entry name" value="CYTC"/>
        <property type="match status" value="4"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1 4" id="KW-0349">Heme</keyword>
    <keyword evidence="3 4" id="KW-0408">Iron</keyword>
    <keyword evidence="2 4" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="8" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="6" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="6">
        <location>
            <begin position="1"/>
            <end position="30"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5002736162" evidence="6">
        <location>
            <begin position="31"/>
            <end position="726"/>
        </location>
    </feature>
    <feature type="domain" description="Cytochrome c" evidence="7">
        <location>
            <begin position="57"/>
            <end position="160"/>
        </location>
    </feature>
    <feature type="domain" description="Cytochrome c" evidence="7">
        <location>
            <begin position="203"/>
            <end position="312"/>
        </location>
    </feature>
    <feature type="domain" description="Cytochrome c" evidence="7">
        <location>
            <begin position="357"/>
            <end position="446"/>
        </location>
    </feature>
    <feature type="domain" description="Cytochrome c" evidence="7">
        <location>
            <begin position="611"/>
            <end position="704"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="5">
        <location>
            <begin position="704"/>
            <end position="726"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="5">
        <location>
            <begin position="705"/>
            <end position="726"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022617"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023004"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00433"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="PROSITE" id="PS51007"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="ABX35137.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="726" mass="78739" checksum="30A35B32BC6E98B0" modified="2008-01-15" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="61" xmlns="http://uniprot.org/uniprot">
    <accession>A9BZ56</accession>
    <name>A9BZ56_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ordered locus">Daci_2518</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="5" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Periplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the UPF0065 (bug) family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX35156.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012204437.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_2518"/>
    <dbReference type="PRIDE" id="A9BZ56"/>
    <dbReference type="EnsemblBacteria" id="ABX35156">
        <property type="protein sequence ID" value="ABX35156"/>
        <property type="gene ID" value="Daci_2518"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_2518"/>
    <dbReference type="eggNOG" id="COG3181">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_045683_1_0_4"/>
    <dbReference type="OMA" id="MIPANPG"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0042597">
        <property type="term" value="C:periplasmic space"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.190.150">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005064">
        <property type="entry name" value="BUG"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR042100">
        <property type="entry name" value="Bug_dom1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR42928">
        <property type="entry name" value="PTHR42928"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03401">
        <property type="entry name" value="TctC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF017082">
        <property type="entry name" value="YflP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="3">
        <location>
            <begin position="1"/>
            <end position="25"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5002736165" evidence="3">
        <location>
            <begin position="26"/>
            <end position="319"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004418"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00006987"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="ABX35156.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="319" mass="32973" checksum="C26FC98CF504995F" modified="2008-01-15" version="1">MRRDTFLKSLAALAAAGSLPLSAQAAVAVKMMLPANPGGGWDTTGRALGKALQDAGQAASVTYDNKGGAAGAIGLAQFVNGSKGDPNAMMVMGAVMLGGIITGKPPVNLTQATPLARLTSEYNVFVLPANSPFKNMAEVIAQLKKDPGSVKWGGGSRGSTEHIAAAMIAREVGVDPSKINYVAFRGGGEAISAILGGNVTVGGSGFSEFAEYISTGKMKPIGVTSGQRLKGVDVPTLKEQGINVEIGNWRGVYGAPGITKPQRDALVAMLEKATKSKAWAEALQKNDWTPAWLASDAFGEFVDQEFASLRATMVKSGMV</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="51" xmlns="http://uniprot.org/uniprot">
    <accession>A9BZ71</accession>
    <name>A9BZ71_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Daci_2533</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="2" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX35171.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_2533"/>
    <dbReference type="PRIDE" id="A9BZ71"/>
    <dbReference type="EnsemblBacteria" id="ABX35171">
        <property type="protein sequence ID" value="ABX35171"/>
        <property type="gene ID" value="Daci_2533"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_2533"/>
    <dbReference type="eggNOG" id="COG1737">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_724970_0_0_4"/>
    <dbReference type="OMA" id="GYRTISE"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ABX35171.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="386" mass="42213" checksum="0A1AD8039AFB1702" modified="2008-01-15" version="1">MSSTRSPISRASQAERFVAGLFEDAGWTIDTAPEGDDDRVDLSVHRGNQRYAVEIKSSQGRADRVVPLLAQAILQAQTLATQERGAAPLAVVYVDHVSPALLRQVMAFAERFAPHVAFGIVSEEGPNHFHGPGLDDLQESPRPRLLARHAPARPAPAINLFSDLNQWMLKVLLAPELPEGLLNAPRGRYCSGAELAAAAQVSAMSASRFLTQLGNENFLDRSSSHLRLVRRRELFSRWSAAATRPGAEIPARFLVRVPVALQMRELLDRAPGERCLGLFAAADALKLGHVSGVPPHVFVRKLPRSGFAASEDWDMLAAFPEGTPDIIVRQAPWPESIFRGATNHDGLLTADAIQVWLDVSNHPSRGKEQAELIYQEVLQPLVEEGL</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="72" xmlns="http://uniprot.org/uniprot">
    <accession>A9BZW9</accession>
    <name>A9BZW9_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Maleylacetoacetate isomerase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ordered locus">Daci_3597</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="5" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the GST superfamily. Zeta family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX36231.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012205431.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_3597"/>
    <dbReference type="PRIDE" id="A9BZW9"/>
    <dbReference type="EnsemblBacteria" id="ABX36231">
        <property type="protein sequence ID" value="ABX36231"/>
        <property type="gene ID" value="Daci_3597"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_3597"/>
    <dbReference type="eggNOG" id="COG0625">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_011226_20_1_4"/>
    <dbReference type="OMA" id="VYNAHRF"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016853">
        <property type="term" value="F:isomerase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009072">
        <property type="term" value="P:aromatic amino acid family metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006749">
        <property type="term" value="P:glutathione metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd03191">
        <property type="entry name" value="GST_C_Zeta"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="CDD" id="cd03042">
        <property type="entry name" value="GST_N_Zeta"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010987">
        <property type="entry name" value="Glutathione-S-Trfase_C-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036282">
        <property type="entry name" value="Glutathione-S-Trfase_C_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR040079">
        <property type="entry name" value="Glutathione_S-Trfase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004045">
        <property type="entry name" value="Glutathione_S-Trfase_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005955">
        <property type="entry name" value="GST_Zeta"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR034330">
        <property type="entry name" value="GST_Zeta_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR034333">
        <property type="entry name" value="GST_Zeta_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036249">
        <property type="entry name" value="Thioredoxin-like_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02798">
        <property type="entry name" value="GST_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SFLD" id="SFLDS00019">
        <property type="entry name" value="Glutathione_Transferase_(cytos"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47616">
        <property type="entry name" value="SSF47616"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52833">
        <property type="entry name" value="SSF52833"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01262">
        <property type="entry name" value="maiA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50405">
        <property type="entry name" value="GST_CTER"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50404">
        <property type="entry name" value="GST_NTER"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-0413">Isomerase</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="GST N-terminal" evidence="2">
        <location>
            <begin position="1"/>
            <end position="81"/>
        </location>
    </feature>
    <feature type="domain" description="GST C-terminal" evidence="3">
        <location>
            <begin position="86"/>
            <end position="221"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00010007"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS50404"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="PROSITE" id="PS50405"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="ABX36231.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="221" mass="24613" checksum="C8FBA7987813A699" modified="2008-01-15" version="1">MKLHTYFRSSASYRVRIALQIKGLDYESVPVHLLRGDHRAPAYAQHVGDALVPALETEDGHWLTQSMAIIEYLDETHAEIPLLPRDALGRAHVRALAQMVACEIHPLNNLRVLKYLVRNLGVSDEAKSAWYVHWVRSGLEAFERQLDLLAAEREAAGLAPSLFCWGDTPTLADCCLVPQIFNGRRFNVSLDGLPRLAAIVDRCEALPAFQKAHPSACPDAE</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="63" xmlns="http://uniprot.org/uniprot">
    <accession>A9BZZ6</accession>
    <name>A9BZZ6_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Transposase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_3624</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX36258.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_3624"/>
    <dbReference type="PRIDE" id="A9BZZ6"/>
    <dbReference type="EnsemblBacteria" id="ABX36258">
        <property type="protein sequence ID" value="ABX36258"/>
        <property type="gene ID" value="Daci_3624"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_3624"/>
    <dbReference type="eggNOG" id="COG2801">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_027402_41_5_4"/>
    <dbReference type="OMA" id="GHISPNE"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015074">
        <property type="term" value="P:DNA integration"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0032196">
        <property type="term" value="P:transposition"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038965">
        <property type="entry name" value="InsF-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001584">
        <property type="entry name" value="Integrase_cat-core"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012337">
        <property type="entry name" value="RNaseH-like_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46889:SF1">
        <property type="entry name" value="PTHR46889:SF1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13333">
        <property type="entry name" value="rve_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53098">
        <property type="entry name" value="SSF53098"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Integrase catalytic" evidence="1">
        <location>
            <begin position="2"/>
            <end position="55"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF13333"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX36258.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="59" mass="7256" checksum="76280202D32388C2" modified="2008-01-15" version="1">MESFFSSLKTERTTRKVYRSRKQARSDVFDYIERFYNPTRRHSTLEYISPIKFEEAREA</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="76" xmlns="http://uniprot.org/uniprot">
    <accession>A9C006</accession>
    <name>A9C006_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Response regulator receiver modulated metal dependent phosphohydrolase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ordered locus">Daci_3636</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="5" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="1">Lacks conserved residue(s) required for the propagation of feature annotation.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX36268.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_3636"/>
    <dbReference type="PRIDE" id="A9C006"/>
    <dbReference type="EnsemblBacteria" id="ABX36268">
        <property type="protein sequence ID" value="ABX36268"/>
        <property type="gene ID" value="Daci_3636"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_3636"/>
    <dbReference type="eggNOG" id="COG3437">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_000445_92_10_4"/>
    <dbReference type="OMA" id="QWHSRRV"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008081">
        <property type="term" value="F:phosphoric diester hydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000160">
        <property type="term" value="P:phosphorelay signal transduction system"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd00077">
        <property type="entry name" value="HDc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011006">
        <property type="entry name" value="CheY-like_superfamily"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003607">
        <property type="entry name" value="HD/PDEase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006674">
        <property type="entry name" value="HD_domain"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037522">
        <property type="entry name" value="HD_GYP_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001789">
        <property type="entry name" value="Sig_transdc_resp-reg_receiver"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01966">
        <property type="entry name" value="HD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00471">
        <property type="entry name" value="HDc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00448">
        <property type="entry name" value="REC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52172">
        <property type="entry name" value="SSF52172"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51832">
        <property type="entry name" value="HD_GYP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50110">
        <property type="entry name" value="RESPONSE_REGULATORY"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Response regulatory" evidence="2">
        <location>
            <begin position="17"/>
            <end position="132"/>
        </location>
    </feature>
    <feature type="domain" description="HD-GYP" evidence="3">
        <location>
            <begin position="180"/>
            <end position="376"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00169"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS50110"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="PROSITE" id="PS51832"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="ABX36268.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="435" mass="48326" checksum="1EB39D745B45B960" modified="2008-01-15" version="1">MNAEDKQESFAQQSRLQALLIDPEVEDFAGLNLLLGQAGYDLRMAASPPEALAEFSGGRIDLLICNTHVLDKDGGQWLESIVGQFPDLFVIFLSEYGRTVIPKGVGRLMGLYRHIVKPWNSEQFLDAIDQLNDQKITRHENIRLDQKNKALTKELAELNATVELAAHVHDDELLEAHRKLKKNFVAAIRMFSNLLEWRGGLLAGHSRRVADLTRRTANIMQLSEEDQQNSFVAALIHDIAHITLADGMLNKPVPSLSHEELEKYRNHSSLGEQLLLPIDDAHPVATLVRSHHERFDGAGFPDGLKGKDIPIGARIIAVADFYDDLMIGHLSSKPLNCAEARTLISHGRGTQFDPEVVDAFLQILIQAIPVADPAPLYVPCSELRPGMVLAQDFVSREGLVLLTAGRVLTTDLIRRMQLRVDLGRKLPIRAMASAV</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="68" xmlns="http://uniprot.org/uniprot">
    <accession>A9C013</accession>
    <name>A9C013_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Cytochrome P450</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_3643</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the cytochrome P450 family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX36275.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_3643"/>
    <dbReference type="PRIDE" id="A9C013"/>
    <dbReference type="EnsemblBacteria" id="ABX36275">
        <property type="protein sequence ID" value="ABX36275"/>
        <property type="gene ID" value="Daci_3643"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_3643"/>
    <dbReference type="eggNOG" id="COG2124">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_001570_5_1_4"/>
    <dbReference type="OMA" id="IFRRMKM"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0020037">
        <property type="term" value="F:heme binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005506">
        <property type="term" value="F:iron ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004497">
        <property type="term" value="F:monooxygenase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016705">
        <property type="term" value="F:oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.630.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001128">
        <property type="entry name" value="Cyt_P450"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017972">
        <property type="entry name" value="Cyt_P450_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002401">
        <property type="entry name" value="Cyt_P450_E_grp-I"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036396">
        <property type="entry name" value="Cyt_P450_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00067">
        <property type="entry name" value="p450"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00463">
        <property type="entry name" value="EP450I"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00385">
        <property type="entry name" value="P450"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48264">
        <property type="entry name" value="SSF48264"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00086">
        <property type="entry name" value="CYTOCHROME_P450"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="1" id="KW-0349">Heme</keyword>
    <keyword evidence="1" id="KW-0408">Iron</keyword>
    <keyword evidence="1" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="1" id="KW-0503">Monooxygenase</keyword>
    <keyword evidence="1" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="RuleBase" id="RU000461"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX36275.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="444" mass="49836" checksum="B2B6B5341931C77E" modified="2008-01-15" version="1">MGWGLLRRMSRDLLGTLAQWRGEHGDAIHLRIWPEHQVVVTDPELVRELLVGQHDALVRWEHGISVFAQLHGHSVLVSEGQPWRSKRQALLPAFSPKAVQAQIPALAAAAQAALQAWPQQSEDFPMEQALTALAMDVIMRLMFSGAIGEDARSAEQAIREVSHAANSEFYWPLRWPDAMPWKRRKRRALAWLRGFIARQVRLRLAQADADWPEDLLSRLLRLHRGDAQAWTLQAVRDECMTAFLAGHETVASSLTWWSWCMATHPEAQQQVADEIQEQLQGRTPTAQDLPALRQLGWSLQEAMRLYPAAPVLISRRCTRPVQLGPWRLPARTLFMIAPGLMQRDARWFPQPDAFQPQRFADADKDGAPAAPRGSWMPFGTGPRVCLGQHLASTEMTVVAAMVLQRLRLSVPEGASAPRPVLQVTLRPSTPLRLRLQSRSGAQAG</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="86" xmlns="http://uniprot.org/uniprot">
    <accession>A9C049</accession>
    <name>A9C049_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">Histidine kinase</fullName>
            <ecNumber evidence="2">2.7.13.3</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="10" type="ordered locus">Daci_3679</name>
    </gene>
    <organism evidence="10 11">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="10 11" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="11">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="11" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="11">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>ATP + protein L-histidine = ADP + protein N-phospho-L-histidine.</text>
            <dbReference type="EC" id="2.7.13.3"/>
        </reaction>
    </comment>
    <dbReference type="EC" id="2.7.13.3" evidence="2"/>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX36311.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_3679"/>
    <dbReference type="PRIDE" id="A9C049"/>
    <dbReference type="EnsemblBacteria" id="ABX36311">
        <property type="protein sequence ID" value="ABX36311"/>
        <property type="gene ID" value="Daci_3679"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_3679"/>
    <dbReference type="eggNOG" id="COG0784">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="eggNOG" id="COG4191">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_000445_114_51_4"/>
    <dbReference type="OMA" id="MPAHIAH"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000155">
        <property type="term" value="F:phosphorelay sensor kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd00082">
        <property type="entry name" value="HisKA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="CDD" id="cd00130">
        <property type="entry name" value="PAS"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.565.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011006">
        <property type="entry name" value="CheY-like_superfamily"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003594">
        <property type="entry name" value="HATPase_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036890">
        <property type="entry name" value="HATPase_C_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005467">
        <property type="entry name" value="His_kinase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003661">
        <property type="entry name" value="HisK_dim/P"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036097">
        <property type="entry name" value="HisK_dim/P_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001610">
        <property type="entry name" value="PAC"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000014">
        <property type="entry name" value="PAS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000700">
        <property type="entry name" value="PAS-assoc_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035965">
        <property type="entry name" value="PAS-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013656">
        <property type="entry name" value="PAS_4"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013655">
        <property type="entry name" value="PAS_fold_3"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004358">
        <property type="entry name" value="Sig_transdc_His_kin-like_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001789">
        <property type="entry name" value="Sig_transdc_resp-reg_receiver"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02518">
        <property type="entry name" value="HATPase_c"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00512">
        <property type="entry name" value="HisKA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08447">
        <property type="entry name" value="PAS_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08448">
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        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00072">
        <property type="entry name" value="Response_reg"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00344">
        <property type="entry name" value="BCTRLSENSOR"/>
    </dbReference>
    <dbReference type="SMART" id="SM00387">
        <property type="entry name" value="HATPase_c"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00388">
        <property type="entry name" value="HisKA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00086">
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        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SMART" id="SM00091">
        <property type="entry name" value="PAS"/>
        <property type="match status" value="3"/>
    </dbReference>
    <dbReference type="SMART" id="SM00448">
        <property type="entry name" value="REC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47384">
        <property type="entry name" value="SSF47384"/>
        <property type="match status" value="1"/>
    </dbReference>
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        <property type="entry name" value="SSF52172"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55785">
        <property type="entry name" value="SSF55785"/>
        <property type="match status" value="3"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55874">
        <property type="entry name" value="SSF55874"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00229">
        <property type="entry name" value="sensory_box"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50109">
        <property type="entry name" value="HIS_KIN"/>
        <property type="match status" value="1"/>
    </dbReference>
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        <property type="entry name" value="PAC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50112">
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        <property type="match status" value="1"/>
    </dbReference>
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        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="10" id="KW-0418">Kinase</keyword>
    <keyword evidence="3 4" id="KW-0597">Phosphoprotein</keyword>
    <keyword evidence="11" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="10" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="PAC" evidence="9">
        <location>
            <begin position="405"/>
            <end position="457"/>
        </location>
    </feature>
    <feature type="domain" description="PAS" evidence="8">
        <location>
            <begin position="490"/>
            <end position="539"/>
        </location>
    </feature>
    <feature type="domain" description="Histidine kinase" evidence="6">
        <location>
            <begin position="608"/>
            <end position="832"/>
        </location>
    </feature>
    <feature type="domain" description="Response regulatory" evidence="7">
        <location>
            <begin position="854"/>
            <end position="970"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="5">
        <location>
            <begin position="118"/>
            <end position="150"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="5">
        <location>
            <begin position="118"/>
            <end position="148"/>
        </location>
    </feature>
    <feature type="modified residue" description="4-aspartylphosphate" evidence="4">
        <location>
            <position position="904"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00000085"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00012438"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022553"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00169"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="PROSITE" id="PS50109"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="PROSITE" id="PS50110"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="PROSITE" id="PS50112"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="9">
        <source>
            <dbReference type="PROSITE" id="PS50113"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="EMBL" id="ABX36311.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="979" mass="107340" checksum="FADC112A562D8896" modified="2008-01-15" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="47" xmlns="http://uniprot.org/uniprot">
    <accession>A9C0Q0</accession>
    <name>A9C0Q0_DELAS</name>
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        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
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        <name evidence="2" type="ordered locus">Daci_4494</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
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    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
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        <property type="protein sequence ID" value="ABX37123.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
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    <dbReference type="EnsemblBacteria" id="ABX37123">
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    <dbReference type="OMA" id="NGFDITC"/>
    <dbReference type="Proteomes" id="UP000000784">
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    </dbReference>
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    </dbReference>
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        <property type="entry name" value="DUF1800"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="31"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="67"/>
            <end position="96"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="69"/>
            <end position="96"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX37123.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="635" mass="66566" checksum="DA5FC76BB8CE1A5B" modified="2008-01-15" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="74" xmlns="http://uniprot.org/uniprot">
    <accession>A9C0Y7</accession>
    <name>A9C0Y7_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="6">Binding-protein-dependent transport systems inner membrane component</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ordered locus">Daci_5822</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
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        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
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                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="7" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="4">Cell membrane</location>
            <topology evidence="4">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="4">Belongs to the binding-protein-dependent transport system permease family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX38450.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_5822"/>
    <dbReference type="PRIDE" id="A9C0Y7"/>
    <dbReference type="EnsemblBacteria" id="ABX38450">
        <property type="protein sequence ID" value="ABX38450"/>
        <property type="gene ID" value="Daci_5822"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_5822"/>
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        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_046113_1_1_4"/>
    <dbReference type="OMA" id="RYLAMDV"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
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        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
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        <property type="term" value="P:transmembrane transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
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        <property type="entry name" value="TM_PBP2"/>
        <property type="match status" value="1"/>
    </dbReference>
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        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000515">
        <property type="entry name" value="MetI-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035906">
        <property type="entry name" value="MetI-like_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00528">
        <property type="entry name" value="BPD_transp_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF161098">
        <property type="entry name" value="SSF161098"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50928">
        <property type="entry name" value="ABC_TM1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3 4" id="KW-0472">Membrane</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1 4" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="2 4" id="KW-1133">Transmembrane helix</keyword>
    <keyword evidence="4" id="KW-0813">Transport</keyword>
    <feature type="transmembrane region" description="Helical" evidence="4">
        <location>
            <begin position="59"/>
            <end position="79"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="4">
        <location>
            <begin position="91"/>
            <end position="112"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="4">
        <location>
            <begin position="118"/>
            <end position="140"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="4">
        <location>
            <begin position="177"/>
            <end position="203"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="4">
        <location>
            <begin position="209"/>
            <end position="228"/>
        </location>
    </feature>
    <feature type="domain" description="ABC transmembrane type-1" evidence="5">
        <location>
            <begin position="52"/>
            <end position="232"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="RuleBase" id="RU363032"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="PROSITE" id="PS50928"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="ABX38450.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="241" mass="25838" checksum="70FC217D4E09ADCE" modified="2008-01-15" version="1">MPLLGAALVLALWWVGGALLARSTPVAAAFAPWPSLQALGQLLTGADIWMHTLLSLQRVAVGLLLAFVVGVPLGVLVGLSRGFSQAFSPVFQFLRMISPLSWMPIAVMVLGVGDAPVYFLLAFAAVWPILLSTAAGVAQLDRNWLLLARSLSATRTETVLRVVLPGITAQILTGVRLAIGIIWIVLVPAEMLGVSAGLGYFILDTRDRLAYSELMAAVVLIGALGYALDHAARWLHQRWMH</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="55" xmlns="http://uniprot.org/uniprot">
    <accession>A9C130</accession>
    <name>A9C130_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">DUF2383 domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Daci_5865</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="4" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX38493.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012207662.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_5865"/>
    <dbReference type="PRIDE" id="A9C130"/>
    <dbReference type="EnsemblBacteria" id="ABX38493">
        <property type="protein sequence ID" value="ABX38493"/>
        <property type="gene ID" value="Daci_5865"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_5865"/>
    <dbReference type="eggNOG" id="COG1633">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="eggNOG" id="COG3861">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_881731_0_0_4"/>
    <dbReference type="OMA" id="YQREPYY"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.1260.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011971">
        <property type="entry name" value="CHP02284"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019052">
        <property type="entry name" value="DUF2383"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012347">
        <property type="entry name" value="Ferritin-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009078">
        <property type="entry name" value="Ferritin-like_SF"/>
    </dbReference>
    <dbReference type="Pfam" id="PF09537">
        <property type="entry name" value="DUF2383"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47240">
        <property type="entry name" value="SSF47240"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR02284">
        <property type="entry name" value="TIGR02284"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="DUF2383" evidence="2">
        <location>
            <begin position="176"/>
            <end position="286"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="24"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="298"/>
            <end position="321"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="302"/>
            <end position="321"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF09537"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ABX38493.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="321" mass="34192" checksum="9F87737D87B3D7BA" modified="2008-01-15" version="1">MTQSNPANRDPLSDAPGAHPVGTGIGAAGGAVTGAAFGAMGGPIGAAVGGVAGAVVGGLAGKGAAEAVNPTVEDAYWRDAYQSEPYYVAGRSYEEYRPAYELGWNAAAARRDADFDAFDAEWEREWTTRRGASHLDWDQARPAARAAWARAGSRDVRDETGTIVAPAYTGDIDNDDVVDVLNDLLESCRDGEYGFRTSSENADSPDLKALFMRHSTECGVAARELEAEIRRLGGEPASGGTVAGALHRGWVSVKTALTSQDDKAVLEECERGEDSALAQYRKALKQPLPPAVRVVVERQAQGAQRNHDEVRDLRDRYRSAA</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="43" xmlns="http://uniprot.org/uniprot">
    <accession>A9C146</accession>
    <name>A9C146_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Lipoprotein, putative</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_5881</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX38509.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012207678.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_5881"/>
    <dbReference type="PRIDE" id="A9C146"/>
    <dbReference type="EnsemblBacteria" id="ABX38509">
        <property type="protein sequence ID" value="ABX38509"/>
        <property type="gene ID" value="Daci_5881"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_5881"/>
    <dbReference type="eggNOG" id="ENOG5031DNS">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_113723_0_0_4"/>
    <dbReference type="OMA" id="DWMYLMD"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR024409">
        <property type="entry name" value="DUF3833"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12915">
        <property type="entry name" value="DUF3833"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0449">Lipoprotein</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="1">
        <location>
            <begin position="1"/>
            <end position="30"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5002732751" evidence="1">
        <location>
            <begin position="31"/>
            <end position="186"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX38509.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="186" mass="20660" checksum="FE1DCC345881AF07" modified="2008-01-15" version="1">MSHITHSASFSPLRRVCLGAALALSLAGCAGPSVQDYAKEQPTLDLRQYFNGPLTAHGMFTDRSGKVVKRFTVRMTGRWNGDEGSLEEHFVYSDGSTQERVWHIRHLGDGRYSGRADDVVGEAQGQGAGNAFRWSYVLALPVNGRVWNVHMDDWMYLMDGRTLLNRTAMSKLGVHLGDVTLSFVKE</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="59" xmlns="http://uniprot.org/uniprot">
    <accession>A9C166</accession>
    <name>A9C166_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Diguanylate cyclase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ordered locus">Daci_5901</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="5" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX38529.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012207698.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_5901"/>
    <dbReference type="PRIDE" id="A9C166"/>
    <dbReference type="EnsemblBacteria" id="ABX38529">
        <property type="protein sequence ID" value="ABX38529"/>
        <property type="gene ID" value="Daci_5901"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_5901"/>
    <dbReference type="eggNOG" id="COG3706">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_000445_11_1_4"/>
    <dbReference type="OMA" id="WIAMMAV"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd01949">
        <property type="entry name" value="GGDEF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.70.270">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000160">
        <property type="entry name" value="GGDEF_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007894">
        <property type="entry name" value="MASE2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029787">
        <property type="entry name" value="Nucleotide_cyclase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043128">
        <property type="entry name" value="Rev_trsase/Diguanyl_cyclase"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00990">
        <property type="entry name" value="GGDEF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF05230">
        <property type="entry name" value="MASE2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00267">
        <property type="entry name" value="GGDEF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55073">
        <property type="entry name" value="SSF55073"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00254">
        <property type="entry name" value="GGDEF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50887">
        <property type="entry name" value="GGDEF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0472">Membrane</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="2" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="37"/>
            <end position="56"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="77"/>
            <end position="101"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="113"/>
            <end position="131"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="143"/>
            <end position="161"/>
        </location>
    </feature>
    <feature type="domain" description="GGDEF" evidence="3">
        <location>
            <begin position="210"/>
            <end position="342"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="342"/>
            <end position="386"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="364"/>
            <end position="386"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="PROSITE" id="PS50887"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="ABX38529.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="386" mass="42387" checksum="5EDD15D459967FB8" modified="2008-01-15" version="1">MSLRQRIHRRTYPLRVSSMALGGLVVGTAMTEMGASPAVWGFVLVSALVWPHIAFLHARHSRDSHRAEHANLQIDALIIGSWIPVMHFCALPSIALLAISIADRNHTATRDGWLQSLVATLLAAALVALLLRPVPDWEASLAVQLSMLPLLLLHSVFSSWSTRQLVRKLARQNVKLQVLSRIDPLTTLYSRDYWWQKARAALRDYRQTQASACLLIVDIDHFKRINDSFGHTVGDEVLQAIGLTIRHCLRSHDAAGRYGGDEFAVLCMHTQLDDAYAVALRIRNQLSQLRVREHPQLRVSASIGVAAADPSFLSVKDWINAADSALYSAKDAGRDQVIPAAPLMAGSAPAQAGTASDTDPDKGSQVGPDTRDSRPTHQPEPDDTLI</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="69" xmlns="http://uniprot.org/uniprot">
    <accession>A9C1A3</accession>
    <name>A9C1A3_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="14">Fimbrial biogenesis outer membrane usher protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="14" type="ordered locus">Daci_5938</name>
    </gene>
    <organism evidence="14 15">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="14 15" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="15">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="15" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="15">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="2 10">Cell outer membrane</location>
            <topology evidence="2 10">Multi-pass membrane protein</topology>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="3 10">Belongs to the fimbrial export usher family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX38566.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_5938"/>
    <dbReference type="PRIDE" id="A9C1A3"/>
    <dbReference type="EnsemblBacteria" id="ABX38566">
        <property type="protein sequence ID" value="ABX38566"/>
        <property type="gene ID" value="Daci_5938"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_5938"/>
    <dbReference type="eggNOG" id="COG3188">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_009120_1_0_4"/>
    <dbReference type="OMA" id="YMQRSIR"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009279">
        <property type="term" value="C:cell outer membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015473">
        <property type="term" value="F:fimbrial usher porin activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009297">
        <property type="term" value="P:pilus assembly"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.40.2070">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.40.2610">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.10.20.410">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000015">
        <property type="entry name" value="Fimb_usher"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018030">
        <property type="entry name" value="Fimbrial_membr_usher_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR042186">
        <property type="entry name" value="FimD_plug_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025949">
        <property type="entry name" value="PapC-like_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043142">
        <property type="entry name" value="PapC-like_C_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025885">
        <property type="entry name" value="PapC_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037224">
        <property type="entry name" value="PapC_N_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30451">
        <property type="entry name" value="PTHR30451"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13953">
        <property type="entry name" value="PapC_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13954">
        <property type="entry name" value="PapC_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00577">
        <property type="entry name" value="Usher"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF141729">
        <property type="entry name" value="SSF141729"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01151">
        <property type="entry name" value="FIMBRIAL_USHER"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="9 10" id="KW-0998">Cell outer membrane</keyword>
    <keyword evidence="10" id="KW-1029">Fimbrium biogenesis</keyword>
    <keyword evidence="8 10" id="KW-0472">Membrane</keyword>
    <keyword evidence="15" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="7" id="KW-0732">Signal</keyword>
    <keyword evidence="6 10" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="5" id="KW-1134">Transmembrane beta strand</keyword>
    <keyword evidence="4 10" id="KW-0813">Transport</keyword>
    <feature type="domain" description="PapC_N" evidence="13">
        <location>
            <begin position="57"/>
            <end position="201"/>
        </location>
    </feature>
    <feature type="domain" description="PapC_C" evidence="12">
        <location>
            <begin position="777"/>
            <end position="842"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="11">
        <location>
            <begin position="919"/>
            <end position="940"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00004571"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00008064"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022448"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022452"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022729"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00023237"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="RuleBase" id="RU003884"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="12">
        <source>
            <dbReference type="Pfam" id="PF13953"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="13">
        <source>
            <dbReference type="Pfam" id="PF13954"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="14">
        <source>
            <dbReference type="EMBL" id="ABX38566.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="15">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="963" mass="103576" checksum="7AA94A9A7633081E" modified="2008-01-15" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="86" xmlns="http://uniprot.org/uniprot">
    <accession>A9C1L7</accession>
    <name>A9C1L7_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="5 10">Adenine phosphoribosyltransferase</fullName>
            <shortName evidence="10">APRT</shortName>
            <ecNumber evidence="5 10">2.4.2.7</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="10" type="primary">apt</name>
        <name evidence="12" type="ordered locus">Daci_6052</name>
    </gene>
    <organism evidence="12 13">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="12 13" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="13">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="13" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="13">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="10">Catalyzes a salvage reaction resulting in the formation of AMP, that is energically less costly than de novo synthesis.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1 10">
            <text>AMP + diphosphate = 5-phospho-alpha-D-ribose 1-diphosphate + adenine</text>
            <dbReference type="Rhea" id="RHEA:16609"/>
            <dbReference type="ChEBI" id="CHEBI:16708"/>
            <dbReference type="ChEBI" id="CHEBI:33019"/>
            <dbReference type="ChEBI" id="CHEBI:58017"/>
            <dbReference type="ChEBI" id="CHEBI:456215"/>
            <dbReference type="EC" id="2.4.2.7"/>
        </reaction>
    </comment>
    <comment type="pathway">
        <text evidence="3 10">Purine metabolism; AMP biosynthesis via salvage pathway; AMP from adenine: step 1/1.</text>
    </comment>
    <comment type="subunit">
        <text evidence="10">Homodimer.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="2 10">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="4 10">Belongs to the purine/pyrimidine phosphoribosyltransferase family.</text>
    </comment>
    <dbReference type="EC" id="2.4.2.7" evidence="5 10"/>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX38680.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012207849.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_6052"/>
    <dbReference type="PRIDE" id="A9C1L7"/>
    <dbReference type="EnsemblBacteria" id="ABX38680">
        <property type="protein sequence ID" value="ABX38680"/>
        <property type="gene ID" value="Daci_6052"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_6052"/>
    <dbReference type="eggNOG" id="COG0503">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_063339_3_0_4"/>
    <dbReference type="OMA" id="KPGIVFR"/>
    <dbReference type="UniPathway" id="UPA00588">
        <property type="reaction ID" value="UER00646"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003999">
        <property type="term" value="F:adenine phosphoribosyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006168">
        <property type="term" value="P:adenine salvage"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0044209">
        <property type="term" value="P:AMP salvage"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniPathway"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006166">
        <property type="term" value="P:purine ribonucleoside salvage"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd06223">
        <property type="entry name" value="PRTases_typeI"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.2020">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00004">
        <property type="entry name" value="Aden_phosphoribosyltr"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005764">
        <property type="entry name" value="Ade_phspho_trans"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000836">
        <property type="entry name" value="PRibTrfase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029057">
        <property type="entry name" value="PRTase-like"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00156">
        <property type="entry name" value="Pribosyltran"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53271">
        <property type="entry name" value="SSF53271"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01090">
        <property type="entry name" value="apt"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="6 10" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="7 10 12" id="KW-0328">Glycosyltransferase</keyword>
    <keyword evidence="9 10" id="KW-0660">Purine salvage</keyword>
    <keyword evidence="13" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="8 10 12" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Pribosyltran" evidence="11">
        <location>
            <begin position="34"/>
            <end position="161"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00000868"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00004496"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00004659"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00008391"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00011893"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022490"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022676"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00022726"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00004"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="11">
        <source>
            <dbReference type="Pfam" id="PF00156"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="EMBL" id="ABX38680.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="13">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="185" mass="20150" checksum="C42B11F6BE28F30F" modified="2008-01-15" version="1">MHTTPSVNDYLRTHIRTVPDWPAPGVQFRDITPLLQDPQVFRVMTDAFVHRYMQRGMRPDVVAGLDARGFILGAVVAHELGVGFVPIRKKGKLPFTTVEETYELEYGSATVELHTDAVKAGDRVLLIDDLIATGGTMMAGKRLLEKLGATVIEGAAIVDLPELGGSTLLRDSGLPLFTLVDFAGH</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="62" xmlns="http://uniprot.org/uniprot">
    <accession>A9C262</accession>
    <name>A9C262_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="10">Radical SAM domain protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="10" type="ordered locus">Daci_3060</name>
    </gene>
    <organism evidence="10 11">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="10 11" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="11">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="11" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="11">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>[4Fe-4S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:49883"/>
        </cofactor>
    </comment>
    <comment type="pathway">
        <text evidence="2">Cofactor biosynthesis; Fe-Mo cofactor biosynthesis.</text>
    </comment>
    <comment type="similarity">
        <text evidence="3">Belongs to the radical SAM superfamily. NifB family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX35698.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_3060"/>
    <dbReference type="PRIDE" id="A9C262"/>
    <dbReference type="EnsemblBacteria" id="ABX35698">
        <property type="protein sequence ID" value="ABX35698"/>
        <property type="gene ID" value="Daci_3060"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_3060"/>
    <dbReference type="eggNOG" id="COG0641">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_009273_3_1_4"/>
    <dbReference type="OMA" id="PYKGTMK"/>
    <dbReference type="UniPathway" id="UPA00782"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003824">
        <property type="term" value="F:catalytic activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051536">
        <property type="term" value="F:iron-sulfur cluster binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009399">
        <property type="term" value="P:nitrogen fixation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.20.20.70">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013785">
        <property type="entry name" value="Aldolase_TIM"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005980">
        <property type="entry name" value="Nase_CF_NifB"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007197">
        <property type="entry name" value="rSAM"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43787:SF3">
        <property type="entry name" value="PTHR43787:SF3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04055">
        <property type="entry name" value="Radical_SAM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SFLD" id="SFLDS00029">
        <property type="entry name" value="Radical_SAM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51918">
        <property type="entry name" value="RADICAL_SAM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="6" id="KW-0408">Iron</keyword>
    <keyword evidence="7" id="KW-0411">Iron-sulfur</keyword>
    <keyword evidence="5" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="8" id="KW-0535">Nitrogen fixation</keyword>
    <keyword evidence="11" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4" id="KW-0949">S-adenosyl-L-methionine</keyword>
    <feature type="domain" description="Radical SAM core" evidence="9">
        <location>
            <begin position="12"/>
            <end position="250"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001966"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00005155"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00006804"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022691"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023004"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023014"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00023231"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="9">
        <source>
            <dbReference type="PROSITE" id="PS51918"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="EMBL" id="ABX35698.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="339" mass="38504" checksum="25AB69848CF21DB5" modified="2008-01-15" version="1">MKNEIHNQLIASVDPKYLELTLLPTEQCNFRCTYCYEDFSIGRMSKKTIDSIKNFLNNRISTLTQLNLQWFGGEPLAAKSIMYEISDFAQKLCIKHKVIFRGSITTNGYLMDMTTVRRLHELSQCSYQISLDGLGPVHNVTRRLASGGGTFDRILKNLKAIRDSELSFSVLLRIHLSVDNHESLKDLVKMLRSEFLHDSRFSVFLKPIENLGGPHSKKIRSLNDQDRRSLKNDLEHLLRMDNSEREKSLNNNPQICYASRPNSLVIRADGRVQKCTVLLSDKRNTVGNLTPEGKINLDHSLMGDWMQGYATGDFKALSCPAIAITQAKTSKTIPIIRIS</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="30" xmlns="http://uniprot.org/uniprot">
    <accession>A9C292</accession>
    <name>A9C292_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Daci_3398</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="2" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX36036.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_3398"/>
    <dbReference type="PRIDE" id="A9C292"/>
    <dbReference type="EnsemblBacteria" id="ABX36036">
        <property type="protein sequence ID" value="ABX36036"/>
        <property type="gene ID" value="Daci_3398"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_3398"/>
    <dbReference type="HOGENOM" id="CLU_1728394_0_0_4"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ABX36036.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="151" mass="17069" checksum="D6E084F2584C6BA2" modified="2008-01-15" version="1">MTATARRPDIATRIIQRVAELPERNSPEDWPEAMLVTGNELQLIISEEIAPIVEETARLVRELRLLDEEIKTLREDAERYRFIKRHRLILSGGTQKFGWPMAPFGDECDRYIAQALATELVAQGAAKARNTAVAVLQPSLWSEESTPQNSD</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="30" xmlns="http://uniprot.org/uniprot">
    <accession>A9C2E7</accession>
    <name>A9C2E7_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Daci_3455</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="2" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX36091.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012205291.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_3455"/>
    <dbReference type="PRIDE" id="A9C2E7"/>
    <dbReference type="EnsemblBacteria" id="ABX36091">
        <property type="protein sequence ID" value="ABX36091"/>
        <property type="gene ID" value="Daci_3455"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_3455"/>
    <dbReference type="HOGENOM" id="CLU_2315652_0_0_4"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ABX36091.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="99" mass="10894" checksum="05F7BBE617E00E9E" modified="2008-01-15" version="1">MQTALQNKVAQVLAEVERSERGIAGYAKDGHYFQVEREEDSDRWYIIVAAPSGGRCYDGWWGDDGRCETLEAAVAEAIDGACLLDEDERAQAQQKGPAS</sequence>
</entry>
<entry dataset="Swiss-Prot" created="2009-04-14" modified="2022-08-03" version="62" xmlns="http://uniprot.org/uniprot">
    <accession>A9C2L1</accession>
    <name>Y3728_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">UPF0145 protein Daci_3728</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name type="ordered locus">Daci_3728</name>
    </gene>
    <organism>
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference key="1">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain>DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the UPF0145 family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX36360.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012205554.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A9C2L1"/>
    <dbReference type="SMR" id="A9C2L1"/>
    <dbReference type="PRIDE" id="A9C2L1"/>
    <dbReference type="EnsemblBacteria" id="ABX36360">
        <property type="protein sequence ID" value="ABX36360"/>
        <property type="gene ID" value="Daci_3728"/>
    </dbReference>
    <dbReference type="GeneID" id="60687956"/>
    <dbReference type="KEGG" id="dac:Daci_3728"/>
    <dbReference type="eggNOG" id="COG0393">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_117144_3_2_4"/>
    <dbReference type="OMA" id="VDFEISM"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00338">
        <property type="entry name" value="UPF0145"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002765">
        <property type="entry name" value="UPF0145"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035439">
        <property type="entry name" value="UPF0145_dom_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR34068">
        <property type="entry name" value="PTHR34068"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01906">
        <property type="entry name" value="YbjQ_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF117782">
        <property type="entry name" value="SSF117782"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword id="KW-1185">Reference proteome</keyword>
    <feature type="chain" id="PRO_1000119988" description="UPF0145 protein Daci_3728">
        <location>
            <begin position="1"/>
            <end position="106"/>
        </location>
    </feature>
    <evidence type="ECO:0000255" key="1">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00338"/>
        </source>
    </evidence>
    <sequence length="106" mass="11383" checksum="439931236CA8E02B" modified="2008-01-15" version="1">MIITTTPQIEGRRITRYCGVVAGEAILGANVFKDLFAGLRDIVGGRSATYERELQRAREIALKELEERAQELGANAVVGVDLDYEVLGQGNGMLMVSASGTAVVLE</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="83" xmlns="http://uniprot.org/uniprot">
    <accession>A9C2L3</accession>
    <name>A9C2L3_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="12">TonB-dependent receptor</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="12" type="ordered locus">Daci_3730</name>
    </gene>
    <organism evidence="12 13">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="12 13" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="13">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="13" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="13">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="7">Cell outer membrane</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="1 7">Belongs to the TonB-dependent receptor family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX36362.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012205556.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_3730"/>
    <dbReference type="PRIDE" id="A9C2L3"/>
    <dbReference type="EnsemblBacteria" id="ABX36362">
        <property type="protein sequence ID" value="ABX36362"/>
        <property type="gene ID" value="Daci_3730"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_3730"/>
    <dbReference type="eggNOG" id="COG4206">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_008287_18_5_4"/>
    <dbReference type="OMA" id="SYELQWR"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009279">
        <property type="term" value="C:cell outer membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.170.130.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.170.20">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR039426">
        <property type="entry name" value="BtuB-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012910">
        <property type="entry name" value="Plug_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037066">
        <property type="entry name" value="Plug_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000531">
        <property type="entry name" value="TonB-dep_rcpt_b-brl"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010916">
        <property type="entry name" value="TonB_box_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036942">
        <property type="entry name" value="TonB_rcpt_b-brl_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30069">
        <property type="entry name" value="PTHR30069"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07715">
        <property type="entry name" value="Plug"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00593">
        <property type="entry name" value="TonB_dep_Rec"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00430">
        <property type="entry name" value="TONB_DEPENDENT_REC_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="6" id="KW-0998">Cell outer membrane</keyword>
    <keyword evidence="4 7" id="KW-0472">Membrane</keyword>
    <keyword evidence="5 12" id="KW-0675">Receptor</keyword>
    <keyword evidence="13" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 9" id="KW-0732">Signal</keyword>
    <keyword evidence="3 7" id="KW-0798">TonB box</keyword>
    <feature type="signal peptide" evidence="9">
        <location>
            <begin position="1"/>
            <end position="41"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5002733292" evidence="9">
        <location>
            <begin position="42"/>
            <end position="637"/>
        </location>
    </feature>
    <feature type="domain" description="Plug" evidence="11">
        <location>
            <begin position="72"/>
            <end position="178"/>
        </location>
    </feature>
    <feature type="domain" description="TonB_dep_Rec" evidence="10">
        <location>
            <begin position="199"/>
            <end position="634"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="8">
        <location>
            <begin position="316"/>
            <end position="335"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00009810"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022729"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023077"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023170"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023237"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="RuleBase" id="RU003357"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="10">
        <source>
            <dbReference type="Pfam" id="PF00593"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="11">
        <source>
            <dbReference type="Pfam" id="PF07715"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="EMBL" id="ABX36362.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="13">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="637" mass="69608" checksum="AA0259C3C9AAECD6" modified="2008-01-15" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="80" xmlns="http://uniprot.org/uniprot">
    <accession>A9C354</accession>
    <name>A9C354_DELAS</name>
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            <fullName evidence="3">Transcriptional regulator, MarR family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Daci_4536</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
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        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="4" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX37165.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012206335.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_4536"/>
    <dbReference type="PRIDE" id="A9C354"/>
    <dbReference type="EnsemblBacteria" id="ABX37165">
        <property type="protein sequence ID" value="ABX37165"/>
        <property type="gene ID" value="Daci_4536"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_4536"/>
    <dbReference type="eggNOG" id="COG1846">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_083287_4_1_4"/>
    <dbReference type="OMA" id="MIEDRNY"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003700">
        <property type="term" value="F:DNA-binding transcription factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000835">
        <property type="entry name" value="HTH_MarR-typ"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036390">
        <property type="entry name" value="WH_DNA-bd_sf"/>
    </dbReference>
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        <property type="entry name" value="MarR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00598">
        <property type="entry name" value="HTHMARR"/>
    </dbReference>
    <dbReference type="SMART" id="SM00347">
        <property type="entry name" value="HTH_MARR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46785">
        <property type="entry name" value="SSF46785"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50995">
        <property type="entry name" value="HTH_MARR_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HTH marR-type" evidence="2">
        <location>
            <begin position="29"/>
            <end position="166"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="26"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS50995"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ABX37165.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="166" mass="18214" checksum="6821A5149BC9E7EB" modified="2008-01-15" version="1">MPRARTPKPAPAEENTAPSSTAAPGPSIDASFLHTLVGYNARRASLSIIEVFVERMATHDLKMVEFSVLSLVSHNPGITSRQLCAALDVMPPNLVGLIAALERRKLIERRTHPTDRRAVGVHLTPAGAELTARAERTAAELELDATYRLTDAERRTLIQLLQKIYN</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="63" xmlns="http://uniprot.org/uniprot">
    <accession>A9C3B3</accession>
    <name>A9C3B3_DELAS</name>
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        <submittedName>
            <fullName evidence="2">NADPH-dependent FMN reductase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_4595</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
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            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
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                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX37224.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012206394.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_4595"/>
    <dbReference type="PRIDE" id="A9C3B3"/>
    <dbReference type="EnsemblBacteria" id="ABX37224">
        <property type="protein sequence ID" value="ABX37224"/>
        <property type="gene ID" value="Daci_4595"/>
    </dbReference>
    <dbReference type="GeneID" id="60688873"/>
    <dbReference type="KEGG" id="dac:Daci_4595"/>
    <dbReference type="eggNOG" id="COG0431">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_055322_4_2_4"/>
    <dbReference type="OMA" id="YGGVWAQ"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016491">
        <property type="term" value="F:oxidoreductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.360">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029039">
        <property type="entry name" value="Flavoprotein-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005025">
        <property type="entry name" value="FMN_Rdtase-like"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03358">
        <property type="entry name" value="FMN_red"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52218">
        <property type="entry name" value="SSF52218"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="FMN_red" evidence="1">
        <location>
            <begin position="4"/>
            <end position="145"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF03358"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX37224.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="182" mass="19721" checksum="A066F7AE5B1E8F09" modified="2008-01-15" version="1">MSQIKVAVIVGSLRKDSFNRKFADAIARLAPEGLVFEQVAIDNLPLYNQDHDGNEVDVVKQFRAQIQSAQAVLFLTPEYNRSIPGVLKNALDQGSRPYGKSVWAGKPAAVAGVSVGAIGTALAQQHLRNVLAYLDMPTLAQPEIFIQAKDGLFAEDGSIGAGSRDFVNGFVQKFAAWARKHQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2021-06-02" version="43" xmlns="http://uniprot.org/uniprot">
    <accession>A9C3E3</accession>
    <name>A9C3E3_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Daci_4625</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
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                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="2" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX37254.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012206424.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_4625"/>
    <dbReference type="EnsemblBacteria" id="ABX37254">
        <property type="protein sequence ID" value="ABX37254"/>
        <property type="gene ID" value="Daci_4625"/>
    </dbReference>
    <dbReference type="GeneID" id="60688841"/>
    <dbReference type="KEGG" id="dac:Daci_4625"/>
    <dbReference type="eggNOG" id="COG4256">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_178563_0_1_4"/>
    <dbReference type="OMA" id="ISHNGST"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019600">
        <property type="entry name" value="Hemin_uptake_protein_HemP"/>
    </dbReference>
    <dbReference type="Pfam" id="PF10636">
        <property type="entry name" value="hemP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ABX37254.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="73" mass="7238" checksum="60D2A50C90E1BE52" modified="2008-01-15" version="1">MSATSAATSHLSGNSNAQAFAALQAAASAALTGAASGLDSTLLLNGQKAVTIVHNGTPYRLQATKLGKLILTK</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="68" xmlns="http://uniprot.org/uniprot">
    <accession>A9C3H3</accession>
    <name>A9C3H3_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">Sulfate adenylyltransferase subunit 2</fullName>
            <ecNumber evidence="2">2.7.7.4</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="4">ATP-sulfurylase small subunit</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="5">Sulfate adenylate transferase</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="8" type="ordered locus">Daci_4655</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="9" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the PAPS reductase family. CysD subfamily.</text>
    </comment>
    <dbReference type="EC" id="2.7.7.4" evidence="2"/>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX37284.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_4655"/>
    <dbReference type="PRIDE" id="A9C3H3"/>
    <dbReference type="EnsemblBacteria" id="ABX37284">
        <property type="protein sequence ID" value="ABX37284"/>
        <property type="gene ID" value="Daci_4655"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_4655"/>
    <dbReference type="eggNOG" id="COG0175">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_043026_0_0_4"/>
    <dbReference type="OMA" id="LMIDTGH"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004781">
        <property type="term" value="F:sulfate adenylyltransferase (ATP) activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0019419">
        <property type="term" value="P:sulfate reduction"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd01713">
        <property type="entry name" value="PAPS_reductase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.620">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002500">
        <property type="entry name" value="PAPS_reduct"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014729">
        <property type="entry name" value="Rossmann-like_a/b/a_fold"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011784">
        <property type="entry name" value="SO4_adenylTrfase_ssu"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01507">
        <property type="entry name" value="PAPS_reduct"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF002936">
        <property type="entry name" value="CysDAde_trans"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="8" id="KW-0548">Nucleotidyltransferase</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="8" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="PAPS_reduct" evidence="7">
        <location>
            <begin position="45"/>
            <end position="269"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="6">
        <location>
            <begin position="293"/>
            <end position="316"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00008885"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00012391"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022004"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00030256"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00031812"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="Pfam" id="PF01507"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="ABX37284.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="316" mass="35944" checksum="1BF07D204AB589CA" modified="2008-01-15" version="1">MIGNQEMNARVDTSVLSHLSNRHLDALEEETIFVLREVAAAFERPTLLFSGGKDSLVMLRCAEKAFGKGRIPYPLLMIDTGHNFPEVTDFRDLRAKELGAELIVRSVEDSMARGTVRLAHPGESRNVHQSVTLLEAIDEFRFDALIGGARRDEEKARAKERIFSHRDSFGQWQPKAQRPELWTLFNTRLAPGEHFRVFPISNWTELDVWQYIEREQIALPSIYYTHKREVVERRGLLVPVTELTPPRDGEQVVVRDVRFRTVGDITCTCPVESEAATAADIVLETLAAEVSERGATRMDDKTSDASMEKRKKDGYF</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="91" xmlns="http://uniprot.org/uniprot">
    <accession>A9C3H4</accession>
    <name>A9C3H4_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Sulfate adenylyltransferase</fullName>
            <ecNumber evidence="1">2.7.7.4</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="8" type="ordered locus">Daci_4656</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="9" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EC" id="2.7.7.4" evidence="1"/>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX37285.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012206455.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_4656"/>
    <dbReference type="PRIDE" id="A9C3H4"/>
    <dbReference type="EnsemblBacteria" id="ABX37285">
        <property type="protein sequence ID" value="ABX37285"/>
        <property type="gene ID" value="Daci_4656"/>
    </dbReference>
    <dbReference type="GeneID" id="60688809"/>
    <dbReference type="KEGG" id="dac:Daci_4656"/>
    <dbReference type="eggNOG" id="COG2895">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_007265_5_2_4"/>
    <dbReference type="OMA" id="FPVQYVL"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005525">
        <property type="term" value="F:GTP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003924">
        <property type="term" value="F:GTPase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004781">
        <property type="term" value="F:sulfate adenylyltransferase (ATP) activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006790">
        <property type="term" value="P:sulfur compound metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd04095">
        <property type="entry name" value="CysN_NoDQ_III"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR044139">
        <property type="entry name" value="CysN_NoDQ_III"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR031157">
        <property type="entry name" value="G_TR_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011779">
        <property type="entry name" value="SO4_adenylTrfase_lsu"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000795">
        <property type="entry name" value="T_Tr_GTP-bd_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009000">
        <property type="entry name" value="Transl_B-barrel_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009001">
        <property type="entry name" value="Transl_elong_EF1A/Init_IF2_C"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00009">
        <property type="entry name" value="GTP_EFTU"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00315">
        <property type="entry name" value="ELONGATNFCT"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50447">
        <property type="entry name" value="SSF50447"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50465">
        <property type="entry name" value="SSF50465"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR02034">
        <property type="entry name" value="CysN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00301">
        <property type="entry name" value="G_TR_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51722">
        <property type="entry name" value="G_TR_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="5" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="6" id="KW-0342">GTP-binding</keyword>
    <keyword evidence="4" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="3 8" id="KW-0548">Nucleotidyltransferase</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 8" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Tr-type G" evidence="7">
        <location>
            <begin position="31"/>
            <end position="245"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00012391"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022695"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023134"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="PROSITE" id="PS51722"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="ABX37285.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="463" mass="49072" checksum="218B5D3781A7E0FE" modified="2008-01-15" version="1">MTTASIAADAAVADSTATQASQATQQTAANASALRFITCGSVDDGKSTLIGRLLVDTRAVLQDQLAGVTKSGETDLALLTDGLSAEREQGITIDVAYRYFATESRKFIIGDAPGHEQYTRNMVTAASSADAAVVLVDATKLDWKNPQLTLLPQTRRHSLLAHLLRVHSLVFAVNKLDAVEDPQQAFVHIRGALERFTAEAGIASAATVPVSALKGFNVVNAEPGWAGYDGPSLLQLLEQLPNTPTDTGLALAFPVQWVEKFSSSADTSQGRRVFWGRVAAGRARVGDAVQILPSGQQAVIAQVLDHARVPGSIDAGLSAGITLDREVDVSRGDWLVAAPAAAAAAADDDFDAPQAQPAWPSKRELTATVAWMDEQPLVPGRTYLALHGHRWIKAKARRVVHRLNIHTLAQEEATQLEPNAIGRVELLLQESIPAAPFAQARQLGALILVDTASHATAGAALLD</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="67" xmlns="http://uniprot.org/uniprot">
    <accession>A9BLM9</accession>
    <name>A9BLM9_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Molybdenum ABC transporter, periplasmic molybdate-binding protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ordered locus">Daci_3883</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="5" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the bacterial solute-binding protein ModA family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX36514.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012205708.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_3883"/>
    <dbReference type="PRIDE" id="A9BLM9"/>
    <dbReference type="EnsemblBacteria" id="ABX36514">
        <property type="protein sequence ID" value="ABX36514"/>
        <property type="gene ID" value="Daci_3883"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_3883"/>
    <dbReference type="eggNOG" id="COG0725">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_065520_1_0_4"/>
    <dbReference type="OMA" id="IGIPDQA"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015689">
        <property type="term" value="P:molybdate ion transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005950">
        <property type="entry name" value="ModA"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01256">
        <property type="entry name" value="modA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 3" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="3">
        <location>
            <begin position="1"/>
            <end position="27"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5002734863" evidence="3">
        <location>
            <begin position="28"/>
            <end position="246"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00009175"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022729"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="ABX36514.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="246" mass="26338" checksum="2C754C9CB0684B69" modified="2008-01-15" version="1">MFKRILSRGLAPLLALLLAGSASLAHADEGLLLAAGAGYRKPVLELLQAFSQATDIRAEASFGNMKQIETQARQNPEIAVLIGDRAFVEPMQLAERYITLGQGQLVLVAARGQRLESVQDLARPEFKRIAIADRSKAVYGNAARICLERLGLAQTLGERLVEVATVPQVSAYVTTGEVDAGFVNKTEALVLKDRVGASVPVAASCHPPIELSLAVLKGRASSPQLQALLDFIATPQARQVLERHGL</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="47" xmlns="http://uniprot.org/uniprot">
    <accession>A9BLZ4</accession>
    <name>A9BLZ4_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Putative transmembrane protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Daci_4302</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="4" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX36933.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012206105.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="PRIDE" id="A9BLZ4"/>
    <dbReference type="EnsemblBacteria" id="ABX36933">
        <property type="protein sequence ID" value="ABX36933"/>
        <property type="gene ID" value="Daci_4302"/>
    </dbReference>
    <dbReference type="GeneID" id="60688563"/>
    <dbReference type="KEGG" id="dac:Daci_4302"/>
    <dbReference type="eggNOG" id="ENOG502Z7XD">
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    </dbReference>
    <dbReference type="GO" id="GO:0016021">
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        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
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    </dbReference>
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        <property type="match status" value="1"/>
    </dbReference>
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    <keyword evidence="2" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="40"/>
            <end position="60"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="179"/>
            <end position="200"/>
        </location>
    </feature>
    <feature type="coiled-coil region" evidence="1">
        <location>
            <begin position="103"/>
            <end position="144"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ABX36933.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="202" mass="21948" checksum="2C66DFF04B72E938" modified="2008-01-15" version="1">MSSGGFHVHGPHDHELEHAAQGEHGQTAHHGIGGGSLTNQIAMCTAVIATVGAIFAYMGGATQANAGLYKNDAAIKKTEAANQWAFFQAKSTKQSLSEFARDLATTEDRRAAYQAKVERYEKEKDDIKRDADRLEAEARQWDEKSEMQMHLHHRWAQATTALQVAIALAAIALLTKKKWLEYAMLGVAALGLGVGGLAMLHI</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2021-06-02" version="57" xmlns="http://uniprot.org/uniprot">
    <accession>A9BM14</accession>
    <name>A9BM14_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="6">NADH-ubiquinone oxidoreductase chain 4L</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ordered locus">Daci_4730</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
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            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
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        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
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                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
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            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="7" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX37359.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
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        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
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        <property type="gene ID" value="Daci_4730"/>
    </dbReference>
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    <dbReference type="KEGG" id="dac:Daci_4730"/>
    <dbReference type="eggNOG" id="COG1006">
        <property type="taxonomic scope" value="Bacteria"/>
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    </dbReference>
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        <property type="project" value="UniProtKB-KW"/>
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    </dbReference>
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        <property type="match status" value="1"/>
    </dbReference>
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        <location>
            <begin position="6"/>
            <end position="21"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="28"/>
            <end position="47"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="77"/>
            <end position="99"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="ABX37359.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="121" mass="12974" checksum="CE9AB14B498A49F7" modified="2008-01-15" version="1">MEVVLAIAIGVLTGSGVWLLLRPRTYQVIMGLALLSYAVNLFIFSMGRQGLAIDKEPVLRAGVPQDLAHYADPMPQALVLTAIVIGFAMTALFLVVLLASRGTTATDHVDGAHSRTEQEMP</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="59" xmlns="http://uniprot.org/uniprot">
    <accession>A9BM98</accession>
    <name>A9BM98_DELAS</name>
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        <submittedName>
            <fullName evidence="2">GCN5-related N-acetyltransferase</fullName>
        </submittedName>
    </protein>
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    <organism evidence="2 3">
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        <lineage>
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            <taxon>Proteobacteria</taxon>
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    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
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                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
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            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX37443.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
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        <property type="nucleotide sequence ID" value="NC_010002.1"/>
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    <dbReference type="EnsemblBacteria" id="ABX37443">
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        <property type="gene ID" value="Daci_4814"/>
    </dbReference>
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    </dbReference>
    <dbReference type="GO" id="GO:0008080">
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        <property type="evidence" value="ECO:0007669"/>
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    <dbReference type="InterPro" id="IPR016181">
        <property type="entry name" value="Acyl_CoA_acyltransferase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000182">
        <property type="entry name" value="GNAT_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00583">
        <property type="entry name" value="Acetyltransf_1"/>
        <property type="match status" value="1"/>
    </dbReference>
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        <property type="entry name" value="SSF55729"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51186">
        <property type="entry name" value="GNAT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="N-acetyltransferase" evidence="1">
        <location>
            <begin position="4"/>
            <end position="152"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS51186"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX37443.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="152" mass="16694" checksum="6DF0183B886029B3" modified="2008-01-15" version="1">MNSTAIHTAIPEDAALIAPLFDAYRQFYEQPADADAALAFITARLERGESVILLARRPDGSALGFCQLYPSFCSVLAAPIYVLYDLFVAPDARRLGVGRALLLAAEAHARATGHARMDLTTARNNLRAQALYESLGWVRDEVFLTYARHLQA</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="67" xmlns="http://uniprot.org/uniprot">
    <accession>A9BMH6</accession>
    <name>A9BMH6_DELAS</name>
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        <submittedName>
            <fullName evidence="2">Aldehyde oxidase and xanthine dehydrogenase molybdopterin binding</fullName>
        </submittedName>
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        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
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    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
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                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
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            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX37521.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012206691.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_4892"/>
    <dbReference type="PRIDE" id="A9BMH6"/>
    <dbReference type="EnsemblBacteria" id="ABX37521">
        <property type="protein sequence ID" value="ABX37521"/>
        <property type="gene ID" value="Daci_4892"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_4892"/>
    <dbReference type="eggNOG" id="COG1529">
        <property type="taxonomic scope" value="Bacteria"/>
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    <dbReference type="OMA" id="MRISGQS"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016491">
        <property type="term" value="F:oxidoreductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000674">
        <property type="entry name" value="Ald_Oxase/Xan_DH_a/b"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008274">
        <property type="entry name" value="AldOxase/xan_DH_Mopterin-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037165">
        <property type="entry name" value="AldOxase/xan_DH_Mopterin-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012368">
        <property type="entry name" value="OxRdtase_Mopterin-bd_su_IorB"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006311">
        <property type="entry name" value="TAT_signal"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02738">
        <property type="entry name" value="Ald_Xan_dh_C2"/>
        <property type="match status" value="3"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF036389">
        <property type="entry name" value="IOR_B"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM01008">
        <property type="entry name" value="Ald_Xan_dh_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56003">
        <property type="entry name" value="SSF56003"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51318">
        <property type="entry name" value="TAT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Ald_Xan_dh_C" evidence="1">
        <location>
            <begin position="228"/>
            <end position="314"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="SMART" id="SM01008"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX37521.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="749" mass="79916" checksum="8793A2E8D6A3D0BD" modified="2008-01-15" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="74" xmlns="http://uniprot.org/uniprot">
    <accession>A9BN06</accession>
    <name>A9BN06_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="5 11">Alkyl hydroperoxide reductase C</fullName>
            <ecNumber evidence="4 11">1.11.1.26</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="8 11">Peroxiredoxin</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="9 11">Thioredoxin peroxidase</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="13" type="ordered locus">Daci_5072</name>
    </gene>
    <organism evidence="13 14">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="13 14" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="14">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="14" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="14">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="11">Thiol-specific peroxidase that catalyzes the reduction of hydrogen peroxide and organic hydroperoxides to water and alcohols, respectively. Plays a role in cell protection against oxidative stress by detoxifying peroxides.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>a hydroperoxide + H(+) + NADH = an alcohol + H2O + NAD(+)</text>
            <dbReference type="Rhea" id="RHEA:62628"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:30879"/>
            <dbReference type="ChEBI" id="CHEBI:35924"/>
            <dbReference type="ChEBI" id="CHEBI:57540"/>
            <dbReference type="ChEBI" id="CHEBI:57945"/>
            <dbReference type="EC" id="1.11.1.26"/>
        </reaction>
    </comment>
    <comment type="subunit">
        <text evidence="11">Homodimer.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="2 11">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="3 11">Belongs to the peroxiredoxin family. AhpC/Prx1 subfamily.</text>
    </comment>
    <dbReference type="EC" id="1.11.1.26" evidence="4 11"/>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX37701.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012206871.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_5072"/>
    <dbReference type="PRIDE" id="A9BN06"/>
    <dbReference type="EnsemblBacteria" id="ABX37701">
        <property type="protein sequence ID" value="ABX37701"/>
        <property type="gene ID" value="Daci_5072"/>
    </dbReference>
    <dbReference type="GeneID" id="60689423"/>
    <dbReference type="KEGG" id="dac:Daci_5072"/>
    <dbReference type="eggNOG" id="COG0450">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_042529_21_3_4"/>
    <dbReference type="OMA" id="FWYPKDF"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0102039">
        <property type="term" value="F:alkylhydroperoxide reductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004601">
        <property type="term" value="F:peroxidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051920">
        <property type="term" value="F:peroxiredoxin activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006979">
        <property type="term" value="P:response to oxidative stress"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017559">
        <property type="entry name" value="AhpC"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000866">
        <property type="entry name" value="AhpC/TSA"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR024706">
        <property type="entry name" value="Peroxiredoxin_AhpC-typ"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019479">
        <property type="entry name" value="Peroxiredoxin_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036249">
        <property type="entry name" value="Thioredoxin-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013766">
        <property type="entry name" value="Thioredoxin_domain"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10681:SF121">
        <property type="entry name" value="PTHR10681:SF121"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF10417">
        <property type="entry name" value="1-cysPrx_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00578">
        <property type="entry name" value="AhpC-TSA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF000239">
        <property type="entry name" value="AHPC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52833">
        <property type="entry name" value="SSF52833"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR03137">
        <property type="entry name" value="AhpC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51352">
        <property type="entry name" value="THIOREDOXIN_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="11" id="KW-0049">Antioxidant</keyword>
    <keyword evidence="11" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="11" id="KW-1015">Disulfide bond</keyword>
    <keyword evidence="7 11 13" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="6 11 13" id="KW-0575">Peroxidase</keyword>
    <keyword evidence="11" id="KW-0676">Redox-active center</keyword>
    <keyword evidence="14" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Thioredoxin" evidence="12">
        <location>
            <begin position="2"/>
            <end position="157"/>
        </location>
    </feature>
    <feature type="active site" description="Cysteine sulfenic acid (-SOH) intermediate" evidence="10">
        <location>
            <position position="47"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00000318"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00004496"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00009796"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00013021"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00017462"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022559"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023002"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00032077"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00032824"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="PIRSR" id="PIRSR000239-1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="RuleBase" id="RU366004"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="12">
        <source>
            <dbReference type="PROSITE" id="PS51352"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="13">
        <source>
            <dbReference type="EMBL" id="ABX37701.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="14">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="187" mass="20946" checksum="9D0680EC2021E2CE" modified="2008-01-15" version="1">MSVINTQIKPFKTQAFKNGKFIEVTEKDVLGKWAVFFFYPADFTFVCPTELGDVADHYDELQKLGVEVFSVSTDTHFVHKAWHDTSDTIRKIKYTMLGDPTWEISNNFEVLRPGQGLADRGTFIVDPDGVIQAVEITAEGIGRNAVDLLRKVKAAQYVRNHPGEVCPAKWEEGDKTLAPSLDLVGKI</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="56" xmlns="http://uniprot.org/uniprot">
    <accession>A9BN15</accession>
    <name>A9BN15_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Endoribonuclease L-PSP</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_5081</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX37710.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012206880.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_5081"/>
    <dbReference type="PRIDE" id="A9BN15"/>
    <dbReference type="EnsemblBacteria" id="ABX37710">
        <property type="protein sequence ID" value="ABX37710"/>
        <property type="gene ID" value="Daci_5081"/>
    </dbReference>
    <dbReference type="GeneID" id="60689432"/>
    <dbReference type="KEGG" id="dac:Daci_5081"/>
    <dbReference type="eggNOG" id="COG0251">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_104845_0_1_4"/>
    <dbReference type="OMA" id="FLAGKGP"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="CDD" id="cd02199">
        <property type="entry name" value="YjgF_YER057c_UK114_like_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.1330.40">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013813">
        <property type="entry name" value="Endoribo_LPSP/chorism_mut-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035959">
        <property type="entry name" value="RutC-like_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF14588">
        <property type="entry name" value="YjgF_endoribonc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55298">
        <property type="entry name" value="SSF55298"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="YjgF_endoribonc" evidence="1">
        <location>
            <begin position="7"/>
            <end position="151"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF14588"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX37710.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="152" mass="16012" checksum="901B0C5E2DD7B4EF" modified="2008-01-15" version="1">MSVYEQLKALNIELPSPAIPAAAYVPYVQTGNLVFLSGHIARKDGKVWAGQLGRDLQTADGQQAARAIAIDLMGTLQHAAGGDLGRVRRIVKLMCLVNSTGDYTEQHLVANGCSELLGQVFGDAGTHARSAFGVAQIPLGSCVEIELIAELA</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="68" xmlns="http://uniprot.org/uniprot">
    <accession>A9BN38</accession>
    <name>A9BN38_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">Coenzyme A biosynthesis bifunctional protein CoaBC</fullName>
        </recommendedName>
        <alternativeName>
            <fullName evidence="3">DNA/pantothenate metabolism flavoprotein</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="3">Phosphopantothenoylcysteine synthetase/decarboxylase</fullName>
            <shortName evidence="3">PPCS-PPCDC</shortName>
        </alternativeName>
        <domain>
            <recommendedName>
                <fullName evidence="3">Phosphopantothenoylcysteine decarboxylase</fullName>
                <shortName evidence="3">PPC decarboxylase</shortName>
                <shortName evidence="3">PPC-DC</shortName>
                <ecNumber evidence="3">4.1.1.36</ecNumber>
            </recommendedName>
            <alternativeName>
                <fullName evidence="3">CoaC</fullName>
            </alternativeName>
        </domain>
        <domain>
            <recommendedName>
                <fullName evidence="3">Phosphopantothenate--cysteine ligase</fullName>
                <ecNumber evidence="3">6.3.2.5</ecNumber>
            </recommendedName>
            <alternativeName>
                <fullName evidence="3">CoaB</fullName>
            </alternativeName>
            <alternativeName>
                <fullName evidence="3">Phosphopantothenoylcysteine synthetase</fullName>
                <shortName evidence="3">PPC synthetase</shortName>
                <shortName evidence="3">PPC-S</shortName>
            </alternativeName>
        </domain>
    </protein>
    <gene>
        <name evidence="3" type="primary">coaBC</name>
        <name evidence="7" type="ordered locus">Daci_5104</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="8" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="3">Catalyzes two sequential steps in the biosynthesis of coenzyme A. In the first step cysteine is conjugated to 4'-phosphopantothenate to form 4-phosphopantothenoylcysteine. In the second step the latter compound is decarboxylated to form 4'-phosphopantotheine.</text>
    </comment>
    <comment type="function">
        <text evidence="4">Catalyzes two steps in the biosynthesis of coenzyme A. In the first step cysteine is conjugated to 4'-phosphopantothenate to form 4-phosphopantothenoylcysteine, in the latter compound is decarboxylated to form 4'-phosphopantotheine.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="3 4">
            <text>(R)-4'-phosphopantothenate + CTP + L-cysteine = CMP + diphosphate + H(+) + N-[(R)-4-phosphopantothenoyl]-L-cysteine</text>
            <dbReference type="Rhea" id="RHEA:19397"/>
            <dbReference type="ChEBI" id="CHEBI:10986"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:33019"/>
            <dbReference type="ChEBI" id="CHEBI:35235"/>
            <dbReference type="ChEBI" id="CHEBI:37563"/>
            <dbReference type="ChEBI" id="CHEBI:59458"/>
            <dbReference type="ChEBI" id="CHEBI:60377"/>
            <dbReference type="EC" id="6.3.2.5"/>
        </reaction>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="3 4">
            <text>H(+) + N-[(R)-4-phosphopantothenoyl]-L-cysteine = (R)-4'-phosphopantetheine + CO2</text>
            <dbReference type="Rhea" id="RHEA:16793"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:16526"/>
            <dbReference type="ChEBI" id="CHEBI:59458"/>
            <dbReference type="ChEBI" id="CHEBI:61723"/>
            <dbReference type="EC" id="4.1.1.36"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="3">
            <name>FMN</name>
            <dbReference type="ChEBI" id="CHEBI:58210"/>
        </cofactor>
        <text evidence="3">Binds 1 FMN per subunit.</text>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="3">
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </cofactor>
    </comment>
    <comment type="pathway">
        <text evidence="3 4">Cofactor biosynthesis; coenzyme A biosynthesis; CoA from (R)-pantothenate: step 2/5.</text>
    </comment>
    <comment type="pathway">
        <text evidence="3 4">Cofactor biosynthesis; coenzyme A biosynthesis; CoA from (R)-pantothenate: step 3/5.</text>
    </comment>
    <comment type="similarity">
        <text evidence="3 4">In the C-terminal section; belongs to the PPC synthetase family.</text>
    </comment>
    <comment type="similarity">
        <text evidence="3 4">In the N-terminal section; belongs to the HFCD (homo-oligomeric flavin containing Cys decarboxylase) superfamily.</text>
    </comment>
    <comment type="caution">
        <text evidence="3">Lacks conserved residue(s) required for the propagation of feature annotation.</text>
    </comment>
    <dbReference type="EC" id="4.1.1.36" evidence="3"/>
    <dbReference type="EC" id="6.3.2.5" evidence="3"/>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX37733.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_5104"/>
    <dbReference type="PRIDE" id="A9BN38"/>
    <dbReference type="EnsemblBacteria" id="ABX37733">
        <property type="protein sequence ID" value="ABX37733"/>
        <property type="gene ID" value="Daci_5104"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_5104"/>
    <dbReference type="eggNOG" id="COG0452">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_033319_0_1_4"/>
    <dbReference type="OMA" id="LDMIVAN"/>
    <dbReference type="UniPathway" id="UPA00241">
        <property type="reaction ID" value="UER00353"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0010181">
        <property type="term" value="F:FMN binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004632">
        <property type="term" value="F:phosphopantothenate--cysteine ligase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004633">
        <property type="term" value="F:phosphopantothenoylcysteine decarboxylase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015937">
        <property type="term" value="P:coenzyme A biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015941">
        <property type="term" value="P:pantothenate catabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.10300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.1950">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_02225">
        <property type="entry name" value="CoaBC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035929">
        <property type="entry name" value="CoaB-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005252">
        <property type="entry name" value="CoaBC"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007085">
        <property type="entry name" value="DNA/pantothenate-metab_flavo_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036551">
        <property type="entry name" value="Flavin_trans-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003382">
        <property type="entry name" value="Flavoprotein"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04127">
        <property type="entry name" value="DFP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02441">
        <property type="entry name" value="Flavoprotein"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF102645">
        <property type="entry name" value="SSF102645"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52507">
        <property type="entry name" value="SSF52507"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00521">
        <property type="entry name" value="coaBC_dfp"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="1 3 4" id="KW-0210">Decarboxylase</keyword>
    <keyword evidence="3 4" id="KW-0285">Flavoprotein</keyword>
    <keyword evidence="3 4" id="KW-0288">FMN</keyword>
    <keyword evidence="3 4 7" id="KW-0436">Ligase</keyword>
    <keyword evidence="2 3 4" id="KW-0456">Lyase</keyword>
    <keyword evidence="3" id="KW-0460">Magnesium</keyword>
    <keyword evidence="3" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="3" id="KW-0511">Multifunctional enzyme</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Flavoprotein" evidence="5">
        <location>
            <begin position="11"/>
            <end position="185"/>
        </location>
    </feature>
    <feature type="domain" description="DFP" evidence="6">
        <location>
            <begin position="193"/>
            <end position="378"/>
        </location>
    </feature>
    <feature type="region of interest" description="Phosphopantothenoylcysteine decarboxylase" evidence="3">
        <location>
            <begin position="1"/>
            <end position="197"/>
        </location>
    </feature>
    <feature type="region of interest" description="Phosphopantothenate--cysteine ligase" evidence="3">
        <location>
            <begin position="198"/>
            <end position="410"/>
        </location>
    </feature>
    <feature type="active site" description="Proton donor" evidence="3">
        <location>
            <position position="166"/>
        </location>
    </feature>
    <feature type="binding site" evidence="3">
        <location>
            <position position="286"/>
        </location>
        <ligand>
            <name>CTP</name>
            <dbReference type="ChEBI" id="CHEBI:37563"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="3">
        <location>
            <position position="296"/>
        </location>
        <ligand>
            <name>CTP</name>
            <dbReference type="ChEBI" id="CHEBI:37563"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="3">
        <location>
            <begin position="314"/>
            <end position="317"/>
        </location>
        <ligand>
            <name>CTP</name>
            <dbReference type="ChEBI" id="CHEBI:37563"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="3">
        <location>
            <position position="336"/>
        </location>
        <ligand>
            <name>CTP</name>
            <dbReference type="ChEBI" id="CHEBI:37563"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="3">
        <location>
            <position position="350"/>
        </location>
        <ligand>
            <name>CTP</name>
            <dbReference type="ChEBI" id="CHEBI:37563"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="3">
        <location>
            <position position="354"/>
        </location>
        <ligand>
            <name>CTP</name>
            <dbReference type="ChEBI" id="CHEBI:37563"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022793"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023239"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_02225"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="RuleBase" id="RU364078"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="Pfam" id="PF02441"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="Pfam" id="PF04127"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="ABX37733.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="410" mass="43856" checksum="AA93F7400D99CB31" modified="2008-01-15" version="1">MRAMTEVFAGKHLVLGLSGGVACYKSAQLVRLLVQAGATVQVVMTEAAEQFITPVTMQALSGRPVYGSQWDAREPNNMPHINLSREADAMLIAPCSADFIARLVQGRSDELLSLMCLARPMDRVPLLLAPAMNREMWAHPATQRNLAQVAADGALVLGVGTGDQACGEVGDGRMLEPEEIMEELAAFFTPKLLQGRQVLVTAGPTFEAIDPVRGITNHSSGKMGFAIARAAREAGAQVTLVAGPVHLRTPRGVQRIDVQSAQQMFDAVHQQLPQAGVFIATAAVADWRPAKASDQKIKKDGSGQTPTLTFVENPDILAAAAQSEPARSGRLYCVGFAAESHDLLQHASAKRLRKQVPLLVGNIGPATFGRDDNALLLIDEAGTQELPHASKSLLARQLVAEIARRLPPVR</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="38" xmlns="http://uniprot.org/uniprot">
    <accession>A9BN64</accession>
    <name>A9BN64_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="3">17 kDa surface antigen</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Daci_5130</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="4" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX37759.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_5130"/>
    <dbReference type="PRIDE" id="A9BN64"/>
    <dbReference type="EnsemblBacteria" id="ABX37759">
        <property type="protein sequence ID" value="ABX37759"/>
        <property type="gene ID" value="Daci_5130"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_5130"/>
    <dbReference type="eggNOG" id="ENOG503367H">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_1765031_0_0_4"/>
    <dbReference type="OMA" id="CAHRPNN"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0019867">
        <property type="term" value="C:outer membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008816">
        <property type="entry name" value="Gly_zipper_2TM_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF05433">
        <property type="entry name" value="Rick_17kDa_Anti"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="75"/>
            <end position="94"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="106"/>
            <end position="132"/>
        </location>
    </feature>
    <feature type="domain" description="Rick_17kDa_Anti" evidence="2">
        <location>
            <begin position="99"/>
            <end position="137"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF05433"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ABX37759.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="147" mass="15293" checksum="480442C891FDCFFD" modified="2008-01-15" version="1">MLEIKLILLHNLIKLYEKLMSASAFCRQSASMPSAMPARPHHHRQDTRKQAMNKTLRTFAHKSERQSGSTMGRTLAIAALLTGALAMGGCAHRPNNAQLGTGVGAVAGGVLGSALFGTTLGTVGGAAAGALVGNQMGSNSDRAGRRR</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="70" xmlns="http://uniprot.org/uniprot">
    <accession>A9BND7</accession>
    <name>A9BND7_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Methyltransferase small</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_5203</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX37832.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012207002.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_5203"/>
    <dbReference type="PRIDE" id="A9BND7"/>
    <dbReference type="EnsemblBacteria" id="ABX37832">
        <property type="protein sequence ID" value="ABX37832"/>
        <property type="gene ID" value="Daci_5203"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_5203"/>
    <dbReference type="eggNOG" id="COG2890">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_046655_1_0_4"/>
    <dbReference type="OMA" id="LWRGDFH"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003676">
        <property type="term" value="F:nucleic acid binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008757">
        <property type="term" value="F:S-adenosylmethionine-dependent methyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="GO" id="GO:0044260">
        <property type="term" value="P:cellular macromolecule metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043412">
        <property type="term" value="P:macromolecule modification"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="GO" id="GO:0032259">
        <property type="term" value="P:methylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006807">
        <property type="term" value="P:nitrogen compound metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="GO" id="GO:0044238">
        <property type="term" value="P:primary metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.150">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002052">
        <property type="entry name" value="DNA_methylase_N6_adenine_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029063">
        <property type="entry name" value="SAM-dependent_MTases_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007848">
        <property type="entry name" value="Small_mtfrase_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF05175">
        <property type="entry name" value="MTS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53335">
        <property type="entry name" value="SSF53335"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00092">
        <property type="entry name" value="N6_MTASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0489">Methyltransferase</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="MTS" evidence="1">
        <location>
            <begin position="193"/>
            <end position="313"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF05175"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX37832.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="403" mass="44291" checksum="6EB3EA37BA7F2406" modified="2008-01-15" version="1">MSSSQNWSLLQWQEHEATQVALWRADSTMTAPRRIVIADDSLAADSAYRLACEGQAMLWRGDFQNARQLLSALGRRLDKPARETSAKARQRRAGKEDAKPVFPHAFHLHRQALAQRARILSSVMIELDTRWHCALRRAPDWSEACREAWGEIPADQGAHSVIVPLRELLGALGAHEWRKKGVALAVPGMPEFSIHPHYGVFSPVRGEYLDLVAQAPLPAAAQQADAAVWDIGTGTGVLSALLLHRGVRQVVATDLSDRALACAQDNLQRLGLAQRVSLRKADLFPEGRAALVVCNPPWLPGKASSLLEQAVYDEGSRMLRGFVEGLAAHLLPGGEGWLILSDLAEHLQLRSREELLGWINAAGLQVLGREDIRPRHGKAADSTDPLHAARAAELTSLWRLAPR</sequence>
</entry>
<entry dataset="Swiss-Prot" created="2008-10-14" modified="2022-08-03" version="73" xmlns="http://uniprot.org/uniprot">
    <accession>A9BNS8</accession>
    <name>RIMM_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Ribosome maturation factor RimM</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="1" type="primary">rimM</name>
        <name type="ordered locus">Daci_5344</name>
    </gene>
    <organism>
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference key="1">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain>DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="1">An accessory protein needed during the final step in the assembly of 30S ribosomal subunit, possibly for assembly of the head region. Probably interacts with S19. Essential for efficient processing of 16S rRNA. May be needed both before and after RbfA during the maturation of 16S rRNA. It has affinity for free ribosomal 30S subunits but not for 70S ribosomes.</text>
    </comment>
    <comment type="subunit">
        <text evidence="1">Binds ribosomal protein S19.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="domain">
        <text evidence="1">The PRC barrel domain binds ribosomal protein S19.</text>
    </comment>
    <comment type="similarity">
        <text evidence="1">Belongs to the RimM family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX37973.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012207142.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A9BNS8"/>
    <dbReference type="SMR" id="A9BNS8"/>
    <dbReference type="STRING" id="398578.Daci_5344"/>
    <dbReference type="PRIDE" id="A9BNS8"/>
    <dbReference type="EnsemblBacteria" id="ABX37973">
        <property type="protein sequence ID" value="ABX37973"/>
        <property type="gene ID" value="Daci_5344"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_5344"/>
    <dbReference type="eggNOG" id="COG0806">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_077636_1_0_4"/>
    <dbReference type="OMA" id="DEFYHAD"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005840">
        <property type="term" value="C:ribosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043022">
        <property type="term" value="F:ribosome binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0042274">
        <property type="term" value="P:ribosomal small subunit biogenesis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006364">
        <property type="term" value="P:rRNA processing"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.30.60">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00014">
        <property type="entry name" value="Ribosome_mat_RimM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011961">
        <property type="entry name" value="16S_RimM"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027275">
        <property type="entry name" value="PRC-brl_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011033">
        <property type="entry name" value="PRC_barrel-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002676">
        <property type="entry name" value="RimM_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036976">
        <property type="entry name" value="RimM_N_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009000">
        <property type="entry name" value="Transl_B-barrel_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF05239">
        <property type="entry name" value="PRC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01782">
        <property type="entry name" value="RimM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50346">
        <property type="entry name" value="SSF50346"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50447">
        <property type="entry name" value="SSF50447"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR02273">
        <property type="entry name" value="16S_RimM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword id="KW-0143">Chaperone</keyword>
    <keyword id="KW-0963">Cytoplasm</keyword>
    <keyword id="KW-1185">Reference proteome</keyword>
    <keyword id="KW-0690">Ribosome biogenesis</keyword>
    <feature type="chain" id="PRO_0000351754" description="Ribosome maturation factor RimM">
        <location>
            <begin position="1"/>
            <end position="189"/>
        </location>
    </feature>
    <feature type="domain" description="PRC barrel" evidence="1">
        <location>
            <begin position="113"/>
            <end position="189"/>
        </location>
    </feature>
    <evidence type="ECO:0000255" key="1">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00014"/>
        </source>
    </evidence>
    <sequence length="189" mass="20887" checksum="9E2369BF7FDE84A9" modified="2008-01-15" version="1">MSHMPELEASVLPADAVEVGRIADAWGIKGWFKVAAFSADPEALFTAKQWYLQPPEKGARQFTGTVLLPVKQARVHSDSVVATSPVVNDRNTAEALRGARIFVARSDFPQPEDGEYYWVDLLGLSVVNREGVVLGVVRDLLSTGPQTVLVLAYEEDGKERERMIPFVDAYVDKVDLPGKTIVADWQPDY</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="87" xmlns="http://uniprot.org/uniprot">
    <accession>A9BNV1</accession>
    <name>A9BNV1_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Transcriptional regulator, GntR family with aminotransferase domain</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Daci_5367</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="4" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">In the C-terminal section; belongs to the class-I pyridoxal-phosphate-dependent aminotransferase family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX37996.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012207165.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="PRIDE" id="A9BNV1"/>
    <dbReference type="EnsemblBacteria" id="ABX37996">
        <property type="protein sequence ID" value="ABX37996"/>
        <property type="gene ID" value="Daci_5367"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_5367"/>
    <dbReference type="eggNOG" id="COG1167">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_017584_0_0_4"/>
    <dbReference type="OMA" id="HMNPQGI"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003700">
        <property type="term" value="F:DNA-binding transcription factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030170">
        <property type="term" value="F:pyridoxal phosphate binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008483">
        <property type="term" value="F:transaminase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009058">
        <property type="term" value="P:biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd07377">
        <property type="entry name" value="WHTH_GntR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.640.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.1150.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004839">
        <property type="entry name" value="Aminotransferase_I/II"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015424">
        <property type="entry name" value="PyrdxlP-dep_Trfase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015421">
        <property type="entry name" value="PyrdxlP-dep_Trfase_major"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015422">
        <property type="entry name" value="PyrdxlP-dep_Trfase_small"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000524">
        <property type="entry name" value="Tscrpt_reg_HTH_GntR"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036390">
        <property type="entry name" value="WH_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00155">
        <property type="entry name" value="Aminotran_1_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00392">
        <property type="entry name" value="GntR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00345">
        <property type="entry name" value="HTH_GNTR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46785">
        <property type="entry name" value="SSF46785"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53383">
        <property type="entry name" value="SSF53383"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50949">
        <property type="entry name" value="HTH_GNTR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-0032">Aminotransferase</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="HTH gntR-type" evidence="2">
        <location>
            <begin position="8"/>
            <end position="76"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00005384"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS50949"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ABX37996.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="494" mass="53558" checksum="D1317C064402F7A4" modified="2008-01-15" version="1">MTLASASPTLYRRLAADYSLAMELGTLKAGERMPSVRELMRRHEVSLSTALQTLRHLEDLGQLEARPRVGYFVRDARPAGLAPASEPDLSQPVQPLPQPHFAGINEHISLMLERGRQADVRVDLGGATPPPELFDRGYLNQAAARLLREQPDLLVLGRSMMGSHPDFQRAMARRALAAGIHVAPADVLATTGNSEAVSLALAAVASPGDVVAVESPTYYGLLQVVESLQMQALEIPCSPRTGLSIEALELALQTQPRLKAVVVVPELQMPLGTRIPDEHKARLVDLCGAHGVALIEDDSYGLFVESSQPVRPIKAWDRLPGHVIYCEAFNKSMAPGLRQGWMNAGQWHGRVQMLKFARSRGTQTLAQLLAAACVGSPAHLRNLQRLKQQLRRQREGMAQLVARFFPLGTRLSLPPGGLSLWLEFPAGVSTSALFTQALARGIRTAPGSMFSNSGRYEHCMRLGCTLPVDAVIEQACRELGAMACAQLGQPARSG</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="73" xmlns="http://uniprot.org/uniprot">
    <accession>A9BNV8</accession>
    <name>A9BNV8_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="9">Acyl-CoA dehydrogenase domain protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="9" type="ordered locus">Daci_5374</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="9 10" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="10" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>FAD</name>
            <dbReference type="ChEBI" id="CHEBI:57692"/>
        </cofactor>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the acyl-CoA dehydrogenase family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX38003.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012207172.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_5374"/>
    <dbReference type="PRIDE" id="A9BNV8"/>
    <dbReference type="EnsemblBacteria" id="ABX38003">
        <property type="protein sequence ID" value="ABX38003"/>
        <property type="gene ID" value="Daci_5374"/>
    </dbReference>
    <dbReference type="GeneID" id="60689722"/>
    <dbReference type="KEGG" id="dac:Daci_5374"/>
    <dbReference type="eggNOG" id="COG1960">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_018204_9_0_4"/>
    <dbReference type="OMA" id="APTIMHF"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0050660">
        <property type="term" value="F:flavin adenine dinucleotide binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016627">
        <property type="term" value="F:oxidoreductase activity, acting on the CH-CH group of donors"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.540.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.110.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006091">
        <property type="entry name" value="Acyl-CoA_Oxase/DH_mid-dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR046373">
        <property type="entry name" value="Acyl-CoA_Oxase/DH_mid-dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036250">
        <property type="entry name" value="AcylCo_DH-like_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009075">
        <property type="entry name" value="AcylCo_DH/oxidase_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013786">
        <property type="entry name" value="AcylCoA_DH/ox_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037069">
        <property type="entry name" value="AcylCoA_DH/ox_N_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009100">
        <property type="entry name" value="AcylCoA_DH/oxidase_NM_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00441">
        <property type="entry name" value="Acyl-CoA_dh_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02770">
        <property type="entry name" value="Acyl-CoA_dh_M"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02771">
        <property type="entry name" value="Acyl-CoA_dh_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47203">
        <property type="entry name" value="SSF47203"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56645">
        <property type="entry name" value="SSF56645"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="4" id="KW-0274">FAD</keyword>
    <keyword evidence="3" id="KW-0285">Flavoprotein</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Acyl-CoA_dh_N" evidence="8">
        <location>
            <begin position="6"/>
            <end position="121"/>
        </location>
    </feature>
    <feature type="domain" description="Acyl-CoA_dh_M" evidence="7">
        <location>
            <begin position="127"/>
            <end position="219"/>
        </location>
    </feature>
    <feature type="domain" description="Acyl-CoA_dh_1" evidence="6">
        <location>
            <begin position="231"/>
            <end position="391"/>
        </location>
    </feature>
    <feature type="coiled-coil region" evidence="5">
        <location>
            <begin position="241"/>
            <end position="268"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001974"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00009347"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022630"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022827"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="Pfam" id="PF00441"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="Pfam" id="PF02770"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="Pfam" id="PF02771"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="ABX38003.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="393" mass="43988" checksum="A6C3538CDD951E83" modified="2008-01-15" version="1">MDLAFTPEEQSFREEVRAWVRANLPQDIAHKVRHSLRLTRDDLQNWAKILGKKGWLGYGWPKQFGGPGWTAVQKHLFEEECALACAPRIIPFGPVMVAPVIMAYGSPEQQQRFLPGIASGEVWWSQGYSEPGSGSDLASLKTRAERVGDKYIVNGQKTWTTLGQYGEWIFCLVRTSNEGKPQTGISFLLVDMKSPGVTVRPIKLLDGECEVNEVFFDNVEVPAENLIGEENKGWTYAKHLLSHERTNIADVNRAKRELERLKRIAKAEGVYEDQRFRDEIAKLEVDVVALEMLVLRVLSAEKSGKNPLDIAGLLKIKGSEIQQRYSELMMQAAGPFSLPFIEEAMEAGWQGDFPGGVVDNAPLASTYFNMRKTTIYGGSNEVQRNIVAQTVLG</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="70" xmlns="http://uniprot.org/uniprot">
    <accession>A9BP74</accession>
    <name>A9BP74_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="10">Prepilin leader peptidase/N-methyltransferase</fullName>
            <ecNumber evidence="10">2.1.1.-</ecNumber>
            <ecNumber evidence="10">3.4.23.43</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="15" type="ordered locus">Daci_5490</name>
    </gene>
    <organism evidence="15 16">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="15 16" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="16">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="16" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="16">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="10">Plays an essential role in type IV pili and type II pseudopili formation by proteolytically removing the leader sequence from substrate proteins and subsequently monomethylating the alpha-amino group of the newly exposed N-terminal phenylalanine.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="10">
            <text>Typically cleaves a -Gly-|-Phe- bond to release an N-terminal, basic peptide of 5-8 residues from type IV prepilin, and then N-methylates the new N-terminal amino group, the methyl donor being S-adenosyl-L-methionine.</text>
            <dbReference type="EC" id="3.4.23.43"/>
        </reaction>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="2">Cell inner membrane</location>
            <topology evidence="2">Multi-pass membrane protein</topology>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="10">Cell membrane</location>
            <topology evidence="10">Multi-pass membrane protein</topology>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="3 9">Belongs to the peptidase A24 family.</text>
    </comment>
    <dbReference type="EC" id="2.1.1.-" evidence="10"/>
    <dbReference type="EC" id="3.4.23.43" evidence="10"/>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX38119.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012207288.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_5490"/>
    <dbReference type="MEROPS" id="A24.001"/>
    <dbReference type="EnsemblBacteria" id="ABX38119">
        <property type="protein sequence ID" value="ABX38119"/>
        <property type="gene ID" value="Daci_5490"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_5490"/>
    <dbReference type="eggNOG" id="COG1989">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_057101_0_0_4"/>
    <dbReference type="OMA" id="VFWLFKL"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004190">
        <property type="term" value="F:aspartic-type endopeptidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008168">
        <property type="term" value="F:methyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0032259">
        <property type="term" value="P:methylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006508">
        <property type="term" value="P:proteolysis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010627">
        <property type="entry name" value="Pept_A24A_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014032">
        <property type="entry name" value="Peptidase_A24A_bac"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000045">
        <property type="entry name" value="Prepilin_IV_endopep_pep"/>
    </dbReference>
    <dbReference type="Pfam" id="PF06750">
        <property type="entry name" value="DiS_P_DiS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01478">
        <property type="entry name" value="Peptidase_A24"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00864">
        <property type="entry name" value="PREPILNPTASE"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-0997">Cell inner membrane</keyword>
    <keyword evidence="4" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="10 15" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="8 12" id="KW-0472">Membrane</keyword>
    <keyword evidence="10" id="KW-0489">Methyltransferase</keyword>
    <keyword evidence="10" id="KW-0511">Multifunctional enzyme</keyword>
    <keyword evidence="10" id="KW-0645">Protease</keyword>
    <keyword evidence="16" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="10" id="KW-0808">Transferase</keyword>
    <keyword evidence="6 10 12" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="7 12" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="12">
        <location>
            <begin position="6"/>
            <end position="27"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="12">
        <location>
            <begin position="135"/>
            <end position="153"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="12">
        <location>
            <begin position="162"/>
            <end position="180"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="12">
        <location>
            <begin position="186"/>
            <end position="204"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="12">
        <location>
            <begin position="224"/>
            <end position="250"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="12">
        <location>
            <begin position="262"/>
            <end position="280"/>
        </location>
    </feature>
    <feature type="domain" description="DiS_P_DiS" evidence="14">
        <location>
            <begin position="14"/>
            <end position="128"/>
        </location>
    </feature>
    <feature type="domain" description="Peptidase_A24" evidence="13">
        <location>
            <begin position="140"/>
            <end position="249"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="11">
        <location>
            <begin position="50"/>
            <end position="69"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00004429"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00005801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022519"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="RuleBase" id="RU003793"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="RuleBase" id="RU003794"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="12">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="13">
        <source>
            <dbReference type="Pfam" id="PF01478"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="14">
        <source>
            <dbReference type="Pfam" id="PF06750"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="15">
        <source>
            <dbReference type="EMBL" id="ABX38119.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="16">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="294" mass="31719" checksum="91B8285D1A1BD791" modified="2008-01-15" version="1">MVLELWMQATLGGLLGLLVGSFLNVVVHRLPRMMEQQWNAECAQWAQEQSGATPPSAAPDPAEPPLSLSRPRSRCPHCGHAIHWYENIPVLSYLALRGRCSECKASISIRYPLVELACAALFAYCTMQWGITPTGAAWCLFSAALLSLALIDWDTTLLPDDITLPLLWAGLLSSALHWTAVTLADAVWGAAVGYLSLWLVYWAFKLATGKEGMGYGDFKLFAALGAWFGWQALVPIILISSVIGAVVGIALKINSRLREGGYVPFGPFLAGAGFAAMVFGPQQMLQSLLAAIGL</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2021-06-02" version="64" xmlns="http://uniprot.org/uniprot">
    <accession>A9BPA5</accession>
    <name>A9BPA5_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_0022</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX32669.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012201962.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_0022"/>
    <dbReference type="EnsemblBacteria" id="ABX32669">
        <property type="protein sequence ID" value="ABX32669"/>
        <property type="gene ID" value="Daci_0022"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_0022"/>
    <dbReference type="eggNOG" id="COG3637">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_093405_1_0_4"/>
    <dbReference type="OMA" id="ELRGHWD"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018550">
        <property type="entry name" value="Lipid-A_deacylase-rel"/>
    </dbReference>
    <dbReference type="Pfam" id="PF09411">
        <property type="entry name" value="PagL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="35"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="1"/>
            <end position="21"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX32669.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="220" mass="24436" checksum="DB9985344F8A28E6" modified="2008-01-15" version="1">MAPKNTQTTPSSCQNHATARKNPPERSGRPQRPGRPASFAAVLLAGAAAVLPLAAQAQSTPESSPSMYLQYGAAEHSADSWTVGVTVPWRNWRHALWGGQLSGYWDVWGARWSAPLEGRDRGTWVIGVNPTVRWRPSNGQSPWFAETGVGLSWALNRRYVTDEKEFPTRYNFATHIGVGYLFGSQGQHELVLRLEHHSNAGIKKPNPGENFLQLRYAHHF</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="60" xmlns="http://uniprot.org/uniprot">
    <accession>A9BPC1</accession>
    <name>A9BPC1_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">NADPH-dependent FMN reductase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_0038</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX32685.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012201978.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_0038"/>
    <dbReference type="PRIDE" id="A9BPC1"/>
    <dbReference type="EnsemblBacteria" id="ABX32685">
        <property type="protein sequence ID" value="ABX32685"/>
        <property type="gene ID" value="Daci_0038"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_0038"/>
    <dbReference type="eggNOG" id="COG0431">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_055322_4_2_4"/>
    <dbReference type="OMA" id="SENMIFT"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016491">
        <property type="term" value="F:oxidoreductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.360">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029039">
        <property type="entry name" value="Flavoprotein-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005025">
        <property type="entry name" value="FMN_Rdtase-like"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03358">
        <property type="entry name" value="FMN_red"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52218">
        <property type="entry name" value="SSF52218"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="FMN_red" evidence="1">
        <location>
            <begin position="1"/>
            <end position="147"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF03358"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX32685.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="193" mass="21245" checksum="C592CE57828D25F9" modified="2008-01-15" version="1">MDIIGLCGSLRRHSLNRLLLELAGECLPPQATMQVCDWRALPPLDADLLATGMPASVHQLRERIRRADAVVLATPEYNFSIPGMFKNALDWISRGDDQPFRHKPVALVSASPGPLGGARVQYELRKVLQCMEADVLARPEVFVGQATQKFDSQGLCTDAATRSFVTAQMQALGRLVAQHRRLHDSAQIPGLHD</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="64" xmlns="http://uniprot.org/uniprot">
    <accession>A9BPE3</accession>
    <name>A9BPE3_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="4">Efflux pump membrane transporter</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="6" type="ordered locus">Daci_0164</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="7" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="2 4">Cell inner membrane</location>
            <topology evidence="2 4">Multi-pass membrane protein</topology>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="3 4">Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX32810.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012202103.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_0164"/>
    <dbReference type="PRIDE" id="A9BPE3"/>
    <dbReference type="EnsemblBacteria" id="ABX32810">
        <property type="protein sequence ID" value="ABX32810"/>
        <property type="gene ID" value="Daci_0164"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_0164"/>
    <dbReference type="eggNOG" id="COG0841">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_002755_1_0_4"/>
    <dbReference type="OMA" id="IVPMTML"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015562">
        <property type="term" value="F:efflux transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0042908">
        <property type="term" value="P:xenobiotic transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.2090.10">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027463">
        <property type="entry name" value="AcrB_DN_DC_subdom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001036">
        <property type="entry name" value="Acrflvin-R"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004764">
        <property type="entry name" value="HAE1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR32063">
        <property type="entry name" value="PTHR32063"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00873">
        <property type="entry name" value="ACR_tran"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00702">
        <property type="entry name" value="ACRIFLAVINRP"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF82714">
        <property type="entry name" value="SSF82714"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00915">
        <property type="entry name" value="2A0602"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-0997">Cell inner membrane</keyword>
    <keyword evidence="4" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="4" id="KW-0472">Membrane</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="4" id="KW-1133">Transmembrane helix</keyword>
    <keyword evidence="4" id="KW-0813">Transport</keyword>
    <feature type="transmembrane region" description="Helical" evidence="4">
        <location>
            <begin position="12"/>
            <end position="32"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="4">
        <location>
            <begin position="342"/>
            <end position="362"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="4">
        <location>
            <begin position="369"/>
            <end position="390"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="4">
        <location>
            <begin position="396"/>
            <end position="419"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="4">
        <location>
            <begin position="440"/>
            <end position="460"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="4">
        <location>
            <begin position="472"/>
            <end position="496"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="4">
        <location>
            <begin position="548"/>
            <end position="567"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="4">
        <location>
            <begin position="878"/>
            <end position="898"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="4">
        <location>
            <begin position="905"/>
            <end position="925"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="4">
        <location>
            <begin position="931"/>
            <end position="952"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="4">
        <location>
            <begin position="980"/>
            <end position="1000"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="4">
        <location>
            <begin position="1012"/>
            <end position="1034"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="5">
        <location>
            <begin position="1045"/>
            <end position="1064"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00004429"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00010942"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="RuleBase" id="RU364070"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="ABX32810.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="1064" mass="113594" checksum="096F03D9E8DAEE97" modified="2008-01-15" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="51" xmlns="http://uniprot.org/uniprot">
    <accession>A9BPG6</accession>
    <name>A9BPG6_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ordered locus">Daci_0187</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="5" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Periplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the UPF0065 (bug) family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX32833.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012202126.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_0187"/>
    <dbReference type="PRIDE" id="A9BPG6"/>
    <dbReference type="EnsemblBacteria" id="ABX32833">
        <property type="protein sequence ID" value="ABX32833"/>
        <property type="gene ID" value="Daci_0187"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_0187"/>
    <dbReference type="eggNOG" id="COG3181">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_045683_0_2_4"/>
    <dbReference type="OMA" id="TLWFAAS"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0042597">
        <property type="term" value="C:periplasmic space"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.190.150">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005064">
        <property type="entry name" value="BUG"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR042100">
        <property type="entry name" value="Bug_dom1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR42928">
        <property type="entry name" value="PTHR42928"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03401">
        <property type="entry name" value="TctC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF017082">
        <property type="entry name" value="YflP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="3">
        <location>
            <begin position="1"/>
            <end position="33"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5002735875" evidence="3">
        <location>
            <begin position="34"/>
            <end position="332"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004418"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00006987"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="ABX32833.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="332" mass="34995" checksum="EA22B9586717D799" modified="2008-01-15" version="1">MPAQHRRKALATLAHAPLLASLVAALATLPAAAQDAQPVRLIVGYSAGGPVDQGARLLSVALTKELGASVVVENKPGANATMAGSEVVRARPDGLTLWFAASPTITISPNVMSKMSFDPARDLTPVAPVLSYYNVLVVNNNEPYKTTAELVAYAKAHPQKLNYGSAGVGGSNHLGALLFARRSGIEMNHIPYKGNAPAMTDVIGGQLSMMLDIISTASTYIQSGKVRAVAVTSPQRNASLPDVPTFAESGIEGLKGFDVGGWYGVYGPKGMSPELVARLNKSINAALAQPELRKRLKELGYEEWTGAPQKLAERGAKERAMWATVTQGIVVD</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="65" xmlns="http://uniprot.org/uniprot">
    <accession>A9BPX7</accession>
    <name>A9BPX7_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="7">Copper-resistance protein, CopA family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ordered locus">Daci_0450</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="8" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Periplasm</location>
        </subcellularLocation>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX33096.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_0450"/>
    <dbReference type="PRIDE" id="A9BPX7"/>
    <dbReference type="EnsemblBacteria" id="ABX33096">
        <property type="protein sequence ID" value="ABX33096"/>
        <property type="gene ID" value="Daci_0450"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_0450"/>
    <dbReference type="eggNOG" id="COG2132">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_009100_5_2_4"/>
    <dbReference type="OMA" id="WNQMRMS"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0042597">
        <property type="term" value="C:periplasmic space"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005507">
        <property type="term" value="F:copper ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016491">
        <property type="term" value="F:oxidoreductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd13848">
        <property type="entry name" value="CuRO_1_CopA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="CDD" id="cd13874">
        <property type="entry name" value="CuRO_2_CopA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="CDD" id="cd13896">
        <property type="entry name" value="CuRO_3_CopA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.40.420">
        <property type="match status" value="3"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001117">
        <property type="entry name" value="Cu-oxidase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011706">
        <property type="entry name" value="Cu-oxidase_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045087">
        <property type="entry name" value="Cu-oxidase_fam"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011707">
        <property type="entry name" value="Cu-oxidase_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006376">
        <property type="entry name" value="Cu-R_CopA"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR033138">
        <property type="entry name" value="Cu_oxidase_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002355">
        <property type="entry name" value="Cu_oxidase_Cu_BS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008972">
        <property type="entry name" value="Cupredoxin"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR034284">
        <property type="entry name" value="CuRO_1_CopA"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR034282">
        <property type="entry name" value="CuRO_2_CopA"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR034279">
        <property type="entry name" value="CuRO_3_CopA"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006311">
        <property type="entry name" value="TAT_signal"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019546">
        <property type="entry name" value="TAT_signal_bac_arc"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11709">
        <property type="entry name" value="PTHR11709"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00394">
        <property type="entry name" value="Cu-oxidase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07731">
        <property type="entry name" value="Cu-oxidase_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07732">
        <property type="entry name" value="Cu-oxidase_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF49503">
        <property type="entry name" value="SSF49503"/>
        <property type="match status" value="3"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01480">
        <property type="entry name" value="copper_res_A"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01409">
        <property type="entry name" value="TAT_signal_seq"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00079">
        <property type="entry name" value="MULTICOPPER_OXIDASE1"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00080">
        <property type="entry name" value="MULTICOPPER_OXIDASE2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51318">
        <property type="entry name" value="TAT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="3" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Plastocyanin-like" evidence="6">
        <location>
            <begin position="66"/>
            <end position="174"/>
        </location>
    </feature>
    <feature type="domain" description="Plastocyanin-like" evidence="4">
        <location>
            <begin position="185"/>
            <end position="362"/>
        </location>
    </feature>
    <feature type="domain" description="Plastocyanin-like" evidence="5">
        <location>
            <begin position="519"/>
            <end position="632"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004418"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023002"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="Pfam" id="PF00394"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="Pfam" id="PF07731"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="Pfam" id="PF07732"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="ABX33096.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="633" mass="69121" checksum="CF0583B3F174F8E9" modified="2008-01-15" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="65" xmlns="http://uniprot.org/uniprot">
    <accession>A9BQI4</accession>
    <name>A9BQI4_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Transcriptional regulator, AsnC family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_0948</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX33594.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_0948"/>
    <dbReference type="PRIDE" id="A9BQI4"/>
    <dbReference type="EnsemblBacteria" id="ABX33594">
        <property type="protein sequence ID" value="ABX33594"/>
        <property type="gene ID" value="Daci_0948"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_0948"/>
    <dbReference type="eggNOG" id="COG1522">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_091233_0_1_4"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011008">
        <property type="entry name" value="Dimeric_a/b-barrel"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019887">
        <property type="entry name" value="Tscrpt_reg_AsnC/Lrp_C"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01037">
        <property type="entry name" value="AsnC_trans_reg"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54909">
        <property type="entry name" value="SSF54909"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="AsnC_trans_reg" evidence="1">
        <location>
            <begin position="58"/>
            <end position="110"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF01037"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX33594.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="121" mass="13470" checksum="EF17CC3EFDB2B3E9" modified="2008-01-15" version="1">MPHARRRCCARRPAAGVITGQAATVDPTRVGRPITIIVEVMTERTSIDALNAMKSHFAVPEVQQCYYVTGEVDLVLVLTVATMQEYEALARRLFAENPNVKWFKTIVALDRVKVGLEIPCD</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2021-09-29" version="59" xmlns="http://uniprot.org/uniprot">
    <accession>A9BQJ3</accession>
    <name>A9BQJ3_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="6">Lysine exporter protein (LYSE/YGGA)</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ordered locus">Daci_0048</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="7" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX32695.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012201988.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_0048"/>
    <dbReference type="EnsemblBacteria" id="ABX32695">
        <property type="protein sequence ID" value="ABX32695"/>
        <property type="gene ID" value="Daci_0048"/>
    </dbReference>
    <dbReference type="GeneID" id="60690453"/>
    <dbReference type="KEGG" id="dac:Daci_0048"/>
    <dbReference type="eggNOG" id="COG1280">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_079569_3_1_4"/>
    <dbReference type="OMA" id="AGVWCGD"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006865">
        <property type="term" value="P:amino acid transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001123">
        <property type="entry name" value="LeuE-type"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30086">
        <property type="entry name" value="PTHR30086"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01810">
        <property type="entry name" value="LysE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF006324">
        <property type="entry name" value="LeuE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="4 5" id="KW-0472">Membrane</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 5" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="3 5" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="6"/>
            <end position="29"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="41"/>
            <end position="66"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="72"/>
            <end position="92"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="113"/>
            <end position="134"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="146"/>
            <end position="172"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="ABX32695.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="204" mass="21708" checksum="9FE746650AD23A0A" modified="2008-01-15" version="1">MFGISDFSAFVVAILLFLLIPGPGNLALITSTGKGGIRAGMAACAGVLAADQVLIWMAVAGVAALLASYPTAFHAVQWLGAAYLGWLGFRMLTAKPGDKPVLHIEPRHYFRQAGLITLMNPKSIVFYMAFFPLFVDPASHQGLLTFAVMAATVAALTFLYCLIVVLLTAHLAERMRANPAVSRVLEKTAGVFLIGFGLKLAIAK</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="82" xmlns="http://uniprot.org/uniprot">
    <accession>A9BQT2</accession>
    <name>A9BQT2_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="11">TonB-dependent hemoglobin/transferrin/lactoferrin family receptor</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="11" type="ordered locus">Daci_0138</name>
    </gene>
    <organism evidence="11 12">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="11 12" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="12">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="12" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="12">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="7">Cell outer membrane</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="1 7">Belongs to the TonB-dependent receptor family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX32784.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012202077.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_0138"/>
    <dbReference type="PRIDE" id="A9BQT2"/>
    <dbReference type="EnsemblBacteria" id="ABX32784">
        <property type="protein sequence ID" value="ABX32784"/>
        <property type="gene ID" value="Daci_0138"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_0138"/>
    <dbReference type="eggNOG" id="COG4771">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_008287_19_0_4"/>
    <dbReference type="OMA" id="WCKKRLL"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009279">
        <property type="term" value="C:cell outer membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0022857">
        <property type="term" value="F:transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006811">
        <property type="term" value="P:ion transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="GO" id="GO:0071702">
        <property type="term" value="P:organic substance transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.170.130.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.170.20">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR039426">
        <property type="entry name" value="BtuB-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012910">
        <property type="entry name" value="Plug_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037066">
        <property type="entry name" value="Plug_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000531">
        <property type="entry name" value="TonB-dep_rcpt_b-brl"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010949">
        <property type="entry name" value="TonB_Hb/transfer/lactofer_rcpt"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036942">
        <property type="entry name" value="TonB_rcpt_b-brl_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010917">
        <property type="entry name" value="TonB_rcpt_CS"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30069">
        <property type="entry name" value="PTHR30069"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07715">
        <property type="entry name" value="Plug"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00593">
        <property type="entry name" value="TonB_dep_Rec"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01786">
        <property type="entry name" value="TonB-hemlactrns"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01156">
        <property type="entry name" value="TONB_DEPENDENT_REC_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="6" id="KW-0998">Cell outer membrane</keyword>
    <keyword evidence="4 7" id="KW-0472">Membrane</keyword>
    <keyword evidence="5 11" id="KW-0675">Receptor</keyword>
    <keyword evidence="12" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0732">Signal</keyword>
    <keyword evidence="3 7" id="KW-0798">TonB box</keyword>
    <feature type="domain" description="Plug" evidence="10">
        <location>
            <begin position="85"/>
            <end position="209"/>
        </location>
    </feature>
    <feature type="domain" description="TonB_dep_Rec" evidence="9">
        <location>
            <begin position="311"/>
            <end position="808"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="8">
        <location>
            <begin position="118"/>
            <end position="144"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="8">
        <location>
            <begin position="118"/>
            <end position="142"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00009810"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022729"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023077"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023170"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023237"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="RuleBase" id="RU003357"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="9">
        <source>
            <dbReference type="Pfam" id="PF00593"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="10">
        <source>
            <dbReference type="Pfam" id="PF07715"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="EMBL" id="ABX32784.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="810" mass="87778" checksum="E8FB5462B761A111" modified="2008-01-15" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="57" xmlns="http://uniprot.org/uniprot">
    <accession>A9BR39</accession>
    <name>A9BR39_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="5">CBS domain containing membrane protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ordered locus">Daci_0348</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="6" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX32994.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_0348"/>
    <dbReference type="PRIDE" id="A9BR39"/>
    <dbReference type="EnsemblBacteria" id="ABX32994">
        <property type="protein sequence ID" value="ABX32994"/>
        <property type="gene ID" value="Daci_0348"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_0348"/>
    <dbReference type="eggNOG" id="COG3448">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_040397_1_1_4"/>
    <dbReference type="OMA" id="TRCLHPP"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.10.580.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000644">
        <property type="entry name" value="CBS_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR046342">
        <property type="entry name" value="CBS_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007065">
        <property type="entry name" value="HPP"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00571">
        <property type="entry name" value="CBS"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04982">
        <property type="entry name" value="HPP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00116">
        <property type="entry name" value="CBS"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54631">
        <property type="entry name" value="SSF54631"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51371">
        <property type="entry name" value="CBS"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0129">CBS domain</keyword>
    <keyword evidence="3" id="KW-0472">Membrane</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="3" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="3">
        <location>
            <begin position="52"/>
            <end position="73"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="3">
        <location>
            <begin position="80"/>
            <end position="98"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="3">
        <location>
            <begin position="104"/>
            <end position="124"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="3">
        <location>
            <begin position="131"/>
            <end position="150"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="3">
        <location>
            <begin position="170"/>
            <end position="194"/>
        </location>
    </feature>
    <feature type="domain" description="CBS" evidence="4">
        <location>
            <begin position="275"/>
            <end position="334"/>
        </location>
    </feature>
    <feature type="domain" description="CBS" evidence="4">
        <location>
            <begin position="365"/>
            <end position="420"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="1"/>
            <end position="35"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00703"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="PROSITE" id="PS51371"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="ABX32994.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="420" mass="44850" checksum="410CB47ABAA63723" modified="2008-01-15" version="1">MLPARAASLPKMTRFCSPPPGPRRQRQKDNKAMGWNRKAWGPVVPRPAPADMWRVAMGSIVGMGLATALVWLAHAGTWDLPLRLFAPLGATAVLLFAVPTSPLAQPWSCVVGNTVSALWALFVLQWCPPQLAPALAVGGAIGCMLLTRSLHPPGGAMALLTVLNAKASLAAGWMLPFLPVGALTLGLVLAATALHRATGRRYPHHADTAPKAAPADAAHRHASRLGLSHADLEALLLRFGQENNLEADDLAELLAAAEETAIEHRLGGVRCAQLMTRDPVSCSLDDDVHAVAARFRAHPAKSLPVLNADGGLAGTVSRAELYEWLWMSPVRPAESAAKPSLLNWLGQRLPGKTRAAPRLSELPQLVHAPELSVDEDTPVGQLLDALARHSVPCIPVMREGRLTGLITRTDLMRLLLQPGR</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="55" xmlns="http://uniprot.org/uniprot">
    <accession>A9BR41</accession>
    <name>A9BR41_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ordered locus">Daci_0350</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="5" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Periplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the UPF0065 (bug) family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX32996.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_0350"/>
    <dbReference type="PRIDE" id="A9BR41"/>
    <dbReference type="EnsemblBacteria" id="ABX32996">
        <property type="protein sequence ID" value="ABX32996"/>
        <property type="gene ID" value="Daci_0350"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_0350"/>
    <dbReference type="eggNOG" id="COG3181">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_045683_0_0_4"/>
    <dbReference type="OMA" id="NSPDMQK"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0042597">
        <property type="term" value="C:periplasmic space"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.190.150">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005064">
        <property type="entry name" value="BUG"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR042100">
        <property type="entry name" value="Bug_dom1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR42928">
        <property type="entry name" value="PTHR42928"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03401">
        <property type="entry name" value="TctC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF017082">
        <property type="entry name" value="YflP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="3">
        <location>
            <begin position="1"/>
            <end position="35"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5002734999" evidence="3">
        <location>
            <begin position="36"/>
            <end position="336"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004418"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00006987"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="ABX32996.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="336" mass="35244" checksum="128FC6469FE76A80" modified="2008-01-15" version="1">MPPLNWPAGDNNTMKQIILAAAACAAAALAMPASAAYPDKPIRLIVPFPPGQATDIFARALAEKLAQKLGQPLVVENKAGAGSNIGSEQVVRSPADGYTLLVAGSAMAVNQTLYKKVNFDPRTDLLGITLIAKVPLVFLAHPGAGIQSMKDLVDKARAEPGRWNYASAGIGGTQHLSAEMVKARAKIQIEHIPYKGSGPAQADFVGGQVPLMVDSVTAALPNIQAGKAVPLGVTSSARSSQLPEVPAIAESGLPEFRGFEAVGWLGLMAPKGTPQEVIDRLNREAVAILRSPEMRKFISDRGSEAAPTTPREMDAFVASEITQWGQAVRQSGASVD</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="82" xmlns="http://uniprot.org/uniprot">
    <accession>A9BRJ7</accession>
    <name>A9BRJ7_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Transcriptional regulator, LysR family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Daci_0712</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="4" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the LysR transcriptional regulatory family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX33358.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012202644.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_0712"/>
    <dbReference type="PRIDE" id="A9BRJ7"/>
    <dbReference type="EnsemblBacteria" id="ABX33358">
        <property type="protein sequence ID" value="ABX33358"/>
        <property type="gene ID" value="Daci_0712"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_0712"/>
    <dbReference type="eggNOG" id="COG0583">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_039613_6_0_4"/>
    <dbReference type="OMA" id="FATDDYP"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003700">
        <property type="term" value="F:DNA-binding transcription factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005119">
        <property type="entry name" value="LysR_subst-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000847">
        <property type="entry name" value="Tscrpt_reg_HTH_LysR"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036390">
        <property type="entry name" value="WH_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00126">
        <property type="entry name" value="HTH_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03466">
        <property type="entry name" value="LysR_substrate"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00039">
        <property type="entry name" value="HTHLYSR"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46785">
        <property type="entry name" value="SSF46785"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50931">
        <property type="entry name" value="HTH_LYSR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HTH lysR-type" evidence="2">
        <location>
            <begin position="1"/>
            <end position="60"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00009437"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS50931"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ABX33358.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="299" mass="32415" checksum="AAFEF40EC1CAB473" modified="2008-01-15" version="1">MNISSRQLDAFIALAQLSSFTLAAQRCHLSQPAFSALIKGLEDGVGVRLFDRSTRHVALTQEGAQFLDAAQRIRADLGDAVHGLREAAALQRGRVSIALLPSLAAAWLPPVLALFHARHPGIQLQVSDLLSESCIAQVASGQADLALAAIRADTEELQAEWFCADRLHLVCRADHALAALPAPAMADLRDQPFIQLARHSSVRQYLESQEQAPPLNTLLEVEHLATVMGMVRAGMGISVVPALALFHFVQPGLVTRPLADADRRRDLYLVRRRQRSLSPAAQAFHALALEHRPGAGETT</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-05-25" version="41" xmlns="http://uniprot.org/uniprot">
    <accession>A9BRK8</accession>
    <name>A9BRK8_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_0723</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX33369.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012202655.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="ABX33369">
        <property type="protein sequence ID" value="ABX33369"/>
        <property type="gene ID" value="Daci_0723"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_0723"/>
    <dbReference type="HOGENOM" id="CLU_2192716_0_0_4"/>
    <dbReference type="OMA" id="VMPGEHE"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.40.2280">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR031560">
        <property type="entry name" value="CzcE"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038674">
        <property type="entry name" value="CzcE_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF16986">
        <property type="entry name" value="CzcE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="1">
        <location>
            <begin position="1"/>
            <end position="21"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5002732446" evidence="1">
        <location>
            <begin position="22"/>
            <end position="108"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX33369.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="108" mass="11511" checksum="A26CD0B94E883E47" modified="2008-01-15" version="1">MKSIFIFGTAAIVMAALPAHAERFANGKSYYGSPAPAGVYRTVDLSQKGPINIACGETVNFTSQGRTFAWKVSSIQHNHVPVARFAPPGFDTQGKSIFVMPGEHELGG</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="80" xmlns="http://uniprot.org/uniprot">
    <accession>A9BRN2</accession>
    <name>A9BRN2_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">Adenosylhomocysteine nucleosidase</fullName>
            <ecNumber evidence="2">3.2.2.9</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="7" type="ordered locus">Daci_0953</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="8" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="pathway">
        <text evidence="1">Amino-acid biosynthesis; L-methionine biosynthesis via salvage pathway; S-methyl-5-thio-alpha-D-ribose 1-phosphate from S-methyl-5'-thioadenosine (hydrolase route): step 1/2.</text>
    </comment>
    <dbReference type="EC" id="3.2.2.9" evidence="2"/>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX33599.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012202885.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_0953"/>
    <dbReference type="PRIDE" id="A9BRN2"/>
    <dbReference type="EnsemblBacteria" id="ABX33599">
        <property type="protein sequence ID" value="ABX33599"/>
        <property type="gene ID" value="Daci_0953"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_0953"/>
    <dbReference type="eggNOG" id="COG0775">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_031248_2_0_4"/>
    <dbReference type="OMA" id="DQFVHSK"/>
    <dbReference type="UniPathway" id="UPA00904">
        <property type="reaction ID" value="UER00871"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008782">
        <property type="term" value="F:adenosylhomocysteine nucleosidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008930">
        <property type="term" value="F:methylthioadenosine nucleosidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0019509">
        <property type="term" value="P:L-methionine salvage from methylthioadenosine"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniPathway"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009164">
        <property type="term" value="P:nucleoside catabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.1580">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010049">
        <property type="entry name" value="MTA_SAH_Nsdase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000845">
        <property type="entry name" value="Nucleoside_phosphorylase_d"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035994">
        <property type="entry name" value="Nucleoside_phosphorylase_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01048">
        <property type="entry name" value="PNP_UDP_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53167">
        <property type="entry name" value="SSF53167"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01704">
        <property type="entry name" value="MTA/SAH-Nsdase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-0028">Amino-acid biosynthesis</keyword>
    <keyword evidence="7" id="KW-0326">Glycosidase</keyword>
    <keyword evidence="4 7" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="5" id="KW-0486">Methionine biosynthesis</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="PNP_UDP_1" evidence="6">
        <location>
            <begin position="2"/>
            <end position="247"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004945"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00011974"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022605"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023167"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="Pfam" id="PF01048"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="ABX33599.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="251" mass="26199" checksum="8C1F5AB602AD5AAA" modified="2008-01-15" version="1">MTIAILSALPQEQEGLVHALSDAQGTAHAGRMFWRGRLHGHDVVCALSGIGKVAAATTATALIERFGVRRIAFTGVAGGLGEGVRVGDVVVADEYLQHDLDASPIFPRWEMPGYGRTRLPCDPEMTAALLAAAQACVAEAGEDLRAAHATTAPRAHQGLIASGDQFVGTAGASSALAQGLRAAGHEVLAVEMEGAAVAQACLDYGVPFAAMRTVSDRADDSAHVDFAEFVRVVASRYALRVVDGFLRRLAV</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="78" xmlns="http://uniprot.org/uniprot">
    <accession>A9BRR5</accession>
    <name>A9BRR5_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Transcriptional regulator, RpiR family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ordered locus">Daci_0986</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="6" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX33632.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012202918.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_0986"/>
    <dbReference type="PRIDE" id="A9BRR5"/>
    <dbReference type="EnsemblBacteria" id="ABX33632">
        <property type="protein sequence ID" value="ABX33632"/>
        <property type="gene ID" value="Daci_0986"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_0986"/>
    <dbReference type="eggNOG" id="COG1737">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_055769_1_3_4"/>
    <dbReference type="OMA" id="REGDVMI"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0097367">
        <property type="term" value="F:carbohydrate derivative binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003700">
        <property type="term" value="F:DNA-binding transcription factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016301">
        <property type="term" value="F:kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006096">
        <property type="term" value="P:glycolytic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd05013">
        <property type="entry name" value="SIS_RpiR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009057">
        <property type="entry name" value="Homeobox-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000281">
        <property type="entry name" value="HTH_RpiR"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035472">
        <property type="entry name" value="RpiR-like_SIS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001347">
        <property type="entry name" value="SIS_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR046348">
        <property type="entry name" value="SIS_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01418">
        <property type="entry name" value="HTH_6"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01380">
        <property type="entry name" value="SIS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46689">
        <property type="entry name" value="SSF46689"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53697">
        <property type="entry name" value="SSF53697"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51071">
        <property type="entry name" value="HTH_RPIR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51464">
        <property type="entry name" value="SIS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0324">Glycolysis</keyword>
    <keyword evidence="1" id="KW-0418">Kinase</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="HTH rpiR-type" evidence="3">
        <location>
            <begin position="23"/>
            <end position="99"/>
        </location>
    </feature>
    <feature type="domain" description="SIS" evidence="4">
        <location>
            <begin position="153"/>
            <end position="290"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022777"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023152"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="PROSITE" id="PS51071"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="PROSITE" id="PS51464"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="ABX33632.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="299" mass="32335" checksum="BB5BDCA93863A673" modified="2008-01-15" version="1">MKNRKTLGDAGAPSLAGPYADRAAFLTVLREGFEALSRQLKAIGRHVEMQGDRLAFDGIQATAEQCGVQPSAVVRFAKHFGFSGYSELQALFRADAARQLSAQHDYQDRIRGLIASGNEPRSSARLAHEVIEGSIESLQALQRGLPPEQFEAAVDLMLDAPSLWLAASRRAFPVGAYLAYALQHTEKPVHWLHGLGAMQKGELRALAPGDVMLAVSFEPYAPETLEVVDAALARGARLLALTDSQLSPLASRATVTLLAQDAATFGFRSLTSTLTLAQSLFLALAYRMELAYEPSVKRS</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="88" xmlns="http://uniprot.org/uniprot">
    <accession>A9BRZ8</accession>
    <name>A9BRZ8_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="6">Enoyl-[acyl-carrier-protein] reductase [NADH]</fullName>
            <ecNumber evidence="6">1.3.1.9</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="10" type="ordered locus">Daci_0762</name>
    </gene>
    <organism evidence="10 11">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="10 11" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="11">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="11" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="11">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="6">
            <text>a 2,3-saturated acyl-[ACP] + NAD(+) = a (2E)-enoyl-[ACP] + H(+) + NADH</text>
            <dbReference type="Rhea" id="RHEA:10240"/>
            <dbReference type="Rhea" id="RHEA-COMP:9925"/>
            <dbReference type="Rhea" id="RHEA-COMP:9926"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:57540"/>
            <dbReference type="ChEBI" id="CHEBI:57945"/>
            <dbReference type="ChEBI" id="CHEBI:78784"/>
            <dbReference type="ChEBI" id="CHEBI:78785"/>
            <dbReference type="EC" id="1.3.1.9"/>
        </reaction>
    </comment>
    <comment type="pathway">
        <text evidence="1">Lipid metabolism; fatty acid biosynthesis.</text>
    </comment>
    <comment type="similarity">
        <text evidence="2 6">Belongs to the short-chain dehydrogenases/reductases (SDR) family. FabI subfamily.</text>
    </comment>
    <dbReference type="EC" id="1.3.1.9" evidence="6"/>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX33408.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012202694.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_0762"/>
    <dbReference type="PRIDE" id="A9BRZ8"/>
    <dbReference type="EnsemblBacteria" id="ABX33408">
        <property type="protein sequence ID" value="ABX33408"/>
        <property type="gene ID" value="Daci_0762"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_0762"/>
    <dbReference type="eggNOG" id="COG0623">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_010194_10_1_4"/>
    <dbReference type="OMA" id="VGEATAW"/>
    <dbReference type="UniPathway" id="UPA00094"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004318">
        <property type="term" value="F:enoyl-[acyl-carrier-protein] reductase (NADH) activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016631">
        <property type="term" value="F:enoyl-[acyl-carrier-protein] reductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006633">
        <property type="term" value="P:fatty acid biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniPathway"/>
    </dbReference>
    <dbReference type="CDD" id="cd05372">
        <property type="entry name" value="ENR_SDR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014358">
        <property type="entry name" value="Enoyl-ACP_Rdtase_NADH"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036291">
        <property type="entry name" value="NAD(P)-bd_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002347">
        <property type="entry name" value="SDR_fam"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43159">
        <property type="entry name" value="PTHR43159"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF000094">
        <property type="entry name" value="Enoyl-ACP_rdct"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00081">
        <property type="entry name" value="GDHRDH"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51735">
        <property type="entry name" value="SSF51735"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5 6" id="KW-0275">Fatty acid biosynthesis</keyword>
    <keyword evidence="5 6" id="KW-0276">Fatty acid metabolism</keyword>
    <keyword evidence="6" id="KW-0444">Lipid biosynthesis</keyword>
    <keyword evidence="5 6" id="KW-0443">Lipid metabolism</keyword>
    <keyword evidence="4 6 9" id="KW-0520">NAD</keyword>
    <keyword evidence="3 6" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="11" id="KW-1185">Reference proteome</keyword>
    <feature type="active site" description="Proton acceptor" evidence="7">
        <location>
            <position position="146"/>
        </location>
    </feature>
    <feature type="active site" description="Proton acceptor" evidence="7">
        <location>
            <position position="156"/>
        </location>
    </feature>
    <feature type="binding site" evidence="9">
        <location>
            <position position="13"/>
        </location>
        <ligand>
            <name>NAD(+)</name>
            <dbReference type="ChEBI" id="CHEBI:57540"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="9">
        <location>
            <begin position="19"/>
            <end position="20"/>
        </location>
        <ligand>
            <name>NAD(+)</name>
            <dbReference type="ChEBI" id="CHEBI:57540"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="9">
        <location>
            <position position="40"/>
        </location>
        <ligand>
            <name>NAD(+)</name>
            <dbReference type="ChEBI" id="CHEBI:57540"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="9">
        <location>
            <begin position="64"/>
            <end position="65"/>
        </location>
        <ligand>
            <name>NAD(+)</name>
            <dbReference type="ChEBI" id="CHEBI:57540"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="9">
        <location>
            <position position="92"/>
        </location>
        <ligand>
            <name>NAD(+)</name>
            <dbReference type="ChEBI" id="CHEBI:57540"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="8">
        <location>
            <position position="95"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="9">
        <location>
            <position position="163"/>
        </location>
        <ligand>
            <name>NAD(+)</name>
            <dbReference type="ChEBI" id="CHEBI:57540"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="9">
        <location>
            <begin position="192"/>
            <end position="196"/>
        </location>
        <ligand>
            <name>NAD(+)</name>
            <dbReference type="ChEBI" id="CHEBI:57540"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00005194"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00009233"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023002"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023027"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023160"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="PIRNR" id="PIRNR000094"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="PIRSR" id="PIRSR000094-1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="PIRSR" id="PIRSR000094-2"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="PIRSR" id="PIRSR000094-3"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="EMBL" id="ABX33408.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="255" mass="26986" checksum="E8A93D37BB4A309B" modified="2008-01-15" version="1">MTLLAGKKGLIVGIANRDSIAWACARAMHAAGAEIGATWQNDKARVHVEPLLDEIGAELRMPLDVGDDEQMRALFDAAAVRWGRLDFVLHAVAYAPRKDLQGRVVDSSREGFALAMDISCHSFIRMAHLAEPLMAASGGSLMTLSYLGASEVMPHYGIMGPVKAALESTTRYLAAELGPSRIRVNAVSPGPIATRAASGIAAFDELVADSVRRSPIAGELRPDDVGPLCAFLASDGARAITGCTLYVDGGHHILN</sequence>
</entry>
<entry dataset="Swiss-Prot" created="2009-03-24" modified="2022-08-03" version="70" xmlns="http://uniprot.org/uniprot">
    <accession>A9BS06</accession>
    <name>TRPC_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Indole-3-glycerol phosphate synthase</fullName>
            <shortName evidence="1">IGPS</shortName>
            <ecNumber evidence="1">4.1.1.48</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="1" type="primary">trpC</name>
        <name type="ordered locus">Daci_0770</name>
    </gene>
    <organism>
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference key="1">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain>DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>1-(2-carboxyphenylamino)-1-deoxy-D-ribulose 5-phosphate + H(+) = (1S,2R)-1-C-(indol-3-yl)glycerol 3-phosphate + CO2 + H2O</text>
            <dbReference type="Rhea" id="RHEA:23476"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:16526"/>
            <dbReference type="ChEBI" id="CHEBI:58613"/>
            <dbReference type="ChEBI" id="CHEBI:58866"/>
            <dbReference type="EC" id="4.1.1.48"/>
        </reaction>
    </comment>
    <comment type="pathway">
        <text evidence="1">Amino-acid biosynthesis; L-tryptophan biosynthesis; L-tryptophan from chorismate: step 4/5.</text>
    </comment>
    <comment type="similarity">
        <text evidence="1">Belongs to the TrpC family.</text>
    </comment>
    <dbReference type="EC" id="4.1.1.48" evidence="1"/>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX33416.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012202702.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A9BS06"/>
    <dbReference type="SMR" id="A9BS06"/>
    <dbReference type="STRING" id="398578.Daci_0770"/>
    <dbReference type="PRIDE" id="A9BS06"/>
    <dbReference type="EnsemblBacteria" id="ABX33416">
        <property type="protein sequence ID" value="ABX33416"/>
        <property type="gene ID" value="Daci_0770"/>
    </dbReference>
    <dbReference type="GeneID" id="60685327"/>
    <dbReference type="KEGG" id="dac:Daci_0770"/>
    <dbReference type="eggNOG" id="COG0134">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_034247_2_0_4"/>
    <dbReference type="OMA" id="RGPHDLI"/>
    <dbReference type="UniPathway" id="UPA00035">
        <property type="reaction ID" value="UER00043"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004425">
        <property type="term" value="F:indole-3-glycerol-phosphate synthase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000162">
        <property type="term" value="P:tryptophan biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd00331">
        <property type="entry name" value="IGPS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.20.20.70">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00134_B">
        <property type="entry name" value="IGPS_B"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013785">
        <property type="entry name" value="Aldolase_TIM"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045186">
        <property type="entry name" value="Indole-3-glycerol_P_synth"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013798">
        <property type="entry name" value="Indole-3-glycerol_P_synth_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001468">
        <property type="entry name" value="Indole-3-GlycerolPSynthase_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011060">
        <property type="entry name" value="RibuloseP-bd_barrel"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR22854">
        <property type="entry name" value="PTHR22854"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00218">
        <property type="entry name" value="IGPS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51366">
        <property type="entry name" value="SSF51366"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00614">
        <property type="entry name" value="IGPS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword id="KW-0028">Amino-acid biosynthesis</keyword>
    <keyword id="KW-0057">Aromatic amino acid biosynthesis</keyword>
    <keyword id="KW-0210">Decarboxylase</keyword>
    <keyword id="KW-0456">Lyase</keyword>
    <keyword id="KW-1185">Reference proteome</keyword>
    <keyword id="KW-0822">Tryptophan biosynthesis</keyword>
    <feature type="chain" id="PRO_1000095864" description="Indole-3-glycerol phosphate synthase">
        <location>
            <begin position="1"/>
            <end position="267"/>
        </location>
    </feature>
    <evidence type="ECO:0000255" key="1">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00134"/>
        </source>
    </evidence>
    <sequence length="267" mass="29114" checksum="12A547140A0B0BC3" modified="2008-01-15" version="1">MSDILKQICDVKVQEVAAAQKRMPFADMRRDAESRVLTRDFVGALRAKIAAGQAGVIAEIKKASPSKGVIREDFIPADIAQSYADGDGKGVSAACLSVLTDKQFFQGSVDYLKQARASCHLPVLRKDFMVDPYQIYESRAMGADCVLLIAACLDDAQMAEMEQIAHSLDMAVLVEVHDGAELDRALRLKTPLVGINNRNLRSFEVSIQTTLDLQKNVPADRLLVTESGIGSREDVKAMRDAGIHSFLVGEAFMRAKEPGEALAKLFA</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="57" xmlns="http://uniprot.org/uniprot">
    <accession>A9BS35</accession>
    <name>A9BS35_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">Citrate synthase (unknown stereospecificity)</fullName>
            <ecNumber evidence="2">2.3.3.16</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Daci_0799</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="4" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="pathway">
        <text evidence="1">Carbohydrate metabolism; tricarboxylic acid cycle; isocitrate from oxaloacetate: step 1/2.</text>
    </comment>
    <dbReference type="EC" id="2.3.3.16" evidence="2"/>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX33445.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012202731.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_0799"/>
    <dbReference type="PRIDE" id="A9BS35"/>
    <dbReference type="EnsemblBacteria" id="ABX33445">
        <property type="protein sequence ID" value="ABX33445"/>
        <property type="gene ID" value="Daci_0799"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_0799"/>
    <dbReference type="eggNOG" id="COG0372">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_070533_1_0_4"/>
    <dbReference type="OMA" id="FGHHLHK"/>
    <dbReference type="UniPathway" id="UPA00223">
        <property type="reaction ID" value="UER00717"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0036440">
        <property type="term" value="F:citrate synthase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006099">
        <property type="term" value="P:tricarboxylic acid cycle"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniPathway"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.230.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.580.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016142">
        <property type="entry name" value="Citrate_synth-like_lrg_a-sub"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016143">
        <property type="entry name" value="Citrate_synth-like_sm_a-sub"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002020">
        <property type="entry name" value="Citrate_synthase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036969">
        <property type="entry name" value="Citrate_synthase_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11739">
        <property type="entry name" value="PTHR11739"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00285">
        <property type="entry name" value="Citrate_synt"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48256">
        <property type="entry name" value="SSF48256"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004751"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00012972"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ABX33445.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="261" mass="27508" checksum="30A913152A6ABD35" modified="2008-01-15" version="1">MATPQPPVTRLCTHTLTSLHYRDADLVEDLMGKKTFTEVMLMQILGRTPRPVDLRIADVVLIVLMEHGLTPSAIATRLIYMSAPENLQGAVSAGLLAVGSSFVGTMENCAALLDRIAAAADPEAEARAIARHHKALKSPVPGFGHHLHKPVDPRAYKLLDMGRADPELAGSRIRALETLSAAVDAAAGRPITINATGAVAALLGEIGVPTAVMRGFAVISRAAGLVAHVVEEQQSPSGRFIWETVEEAIPYAGHAVSANAA</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="60" xmlns="http://uniprot.org/uniprot">
    <accession>A9BSA7</accession>
    <name>A9BSA7_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Daci_1076</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="4" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX33721.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012203007.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_1076"/>
    <dbReference type="PRIDE" id="A9BSA7"/>
    <dbReference type="EnsemblBacteria" id="ABX33721">
        <property type="protein sequence ID" value="ABX33721"/>
        <property type="gene ID" value="Daci_1076"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_1076"/>
    <dbReference type="eggNOG" id="COG0697">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_033863_12_0_4"/>
    <dbReference type="OMA" id="HVVVFLY"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000620">
        <property type="entry name" value="EamA_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00892">
        <property type="entry name" value="EamA"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="12"/>
            <end position="29"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="35"/>
            <end position="57"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="95"/>
            <end position="115"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="127"/>
            <end position="146"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="152"/>
            <end position="171"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="192"/>
            <end position="210"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="222"/>
            <end position="245"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="252"/>
            <end position="272"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="278"/>
            <end position="299"/>
        </location>
    </feature>
    <feature type="domain" description="EamA" evidence="2">
        <location>
            <begin position="12"/>
            <end position="143"/>
        </location>
    </feature>
    <feature type="domain" description="EamA" evidence="2">
        <location>
            <begin position="159"/>
            <end position="294"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF00892"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ABX33721.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="304" mass="32570" checksum="7D0062AE94618A9A" modified="2008-01-15" version="1">MDSRKPLDARAAALMLMLCLIWSLQQILLKATADAIAPTLQIALRSGVGAVLVWLFMRWLGMRVQWGDGSWRPGLAVGTLFALEFLLVGESINHTSAAHVVVFLYSAPVFAALGLHWKLPSERLAPLQWLGIALAFAGIALAFLGGGKPSKAGGAAMLLGDLLALAAGVAWGATTVAIRTTRLASLPAAQTLLYQLATGFALLLPAAFLLGQTRFEPTPLAWAGLAFQSVLVCFVSFLVWFWLLTQYLASRLGVFSFMTPIFGVVFGAWLLSEPIEPNFLAGALMVLAGVLLVSGYGWLMSLRR</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="64" xmlns="http://uniprot.org/uniprot">
    <accession>A9BSL7</accession>
    <name>A9BSL7_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="8">Porin Gram-negative type</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="8" type="ordered locus">Daci_1378</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="9" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX34022.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012203308.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_1378"/>
    <dbReference type="PRIDE" id="A9BSL7"/>
    <dbReference type="EnsemblBacteria" id="ABX34022">
        <property type="protein sequence ID" value="ABX34022"/>
        <property type="gene ID" value="Daci_1378"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_1378"/>
    <dbReference type="eggNOG" id="COG3203">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_038238_1_1_4"/>
    <dbReference type="OMA" id="AVEMGRM"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009279">
        <property type="term" value="C:cell outer membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046930">
        <property type="term" value="C:pore complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015288">
        <property type="term" value="F:porin activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0034220">
        <property type="term" value="P:ion transmembrane transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd00342">
        <property type="entry name" value="gram_neg_porins"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.160.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR033900">
        <property type="entry name" value="Gram_neg_porin_domain"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023614">
        <property type="entry name" value="Porin_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001702">
        <property type="entry name" value="Porin_Gram-ve"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13609">
        <property type="entry name" value="Porin_4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00182">
        <property type="entry name" value="ECOLNEIPORIN"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-0406">Ion transport</keyword>
    <keyword evidence="5" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-0626">Porin</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="6" id="KW-0732">Signal</keyword>
    <keyword evidence="2" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="2" id="KW-1134">Transmembrane beta strand</keyword>
    <keyword evidence="1" id="KW-0813">Transport</keyword>
    <feature type="signal peptide" evidence="6">
        <location>
            <begin position="1"/>
            <end position="21"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5002735762" evidence="6">
        <location>
            <begin position="22"/>
            <end position="354"/>
        </location>
    </feature>
    <feature type="domain" description="Porin_4" evidence="7">
        <location>
            <begin position="13"/>
            <end position="315"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022448"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022452"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023065"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023114"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="Pfam" id="PF13609"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="ABX34022.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="354" mass="37387" checksum="D52180A30DD44BEE" modified="2008-01-15" version="1">MKHKHWLAAGGMAALGMSAWAQSSVEMFGIVDVHINSARSGATRLSRLEDGGSAASRIGFRGSEDLGGGLRAQFMLEAGVAPDTGLGTIPGPGLAFTRQAWVGLNSGWGAVEMGRMYTPMFGALFRADPLGMNALFSSLNLVSATDAQAGLRPFAARANNLVRYRTPAGQPWLADLAYSFGEVASPNSSNGRLYGATLGWNQKPWFLAYSFQKSVEGSAAAPVAAPATSQYQALSASWEALDGLRLTGNYVINRVDRAGTPKAKLAQLGADWSVDSRSKLLVSVARREVGGTDRAQNTWTLGYDYALSKRTVLYARWLQLGNAANASAAIANVPVAANSGDGVRSLALGVRHNF</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="49" xmlns="http://uniprot.org/uniprot">
    <accession>A9BT33</accession>
    <name>A9BT33_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">AYP/GTP-binding protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_1751</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX34393.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012203678.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_1751"/>
    <dbReference type="PRIDE" id="A9BT33"/>
    <dbReference type="EnsemblBacteria" id="ABX34393">
        <property type="protein sequence ID" value="ABX34393"/>
        <property type="gene ID" value="Daci_1751"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_1751"/>
    <dbReference type="eggNOG" id="COG0419">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_028585_0_0_4"/>
    <dbReference type="OMA" id="ANWLYSH"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR022205">
        <property type="entry name" value="DUF3732"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12532">
        <property type="entry name" value="DUF3732"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="coiled-coil region" evidence="1">
        <location>
            <begin position="359"/>
            <end position="386"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX34393.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="616" mass="70910" checksum="138428481F2EF3EA" modified="2008-01-15" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="80" xmlns="http://uniprot.org/uniprot">
    <accession>A9BTC0</accession>
    <name>A9BTC0_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Transcriptional regulator, LysR family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Daci_2045</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="4" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the LysR transcriptional regulatory family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX34685.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012203970.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_2045"/>
    <dbReference type="PRIDE" id="A9BTC0"/>
    <dbReference type="EnsemblBacteria" id="ABX34685">
        <property type="protein sequence ID" value="ABX34685"/>
        <property type="gene ID" value="Daci_2045"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_2045"/>
    <dbReference type="eggNOG" id="COG0583">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_039613_2_1_4"/>
    <dbReference type="OMA" id="DWFGAHV"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003700">
        <property type="term" value="F:DNA-binding transcription factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005119">
        <property type="entry name" value="LysR_subst-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000847">
        <property type="entry name" value="Tscrpt_reg_HTH_LysR"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036390">
        <property type="entry name" value="WH_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00126">
        <property type="entry name" value="HTH_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03466">
        <property type="entry name" value="LysR_substrate"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46785">
        <property type="entry name" value="SSF46785"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50931">
        <property type="entry name" value="HTH_LYSR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HTH lysR-type" evidence="2">
        <location>
            <begin position="7"/>
            <end position="64"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00009437"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS50931"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ABX34685.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="311" mass="33649" checksum="2741070FAD704CCD" modified="2008-01-15" version="1">MKNQPPTTWDDLRVLLALHRHQSLLAAGAALGLSTSTVARRIEALEQSLGRALVHRSSAGTTVEPDAMELVELAEQFELGLGGIKRDDRPDEKAHALTGTIRVSMGEGFVKPVTAVLSQLRSAHPGLHIEVAVESRFTDVGRREVDVALRVGRSSSAVVVEKWAGQLTFGLYASHGYVEQRLPDRHLRVQDFASHDFVGQDLATGRQDASNQWLASRGATRFVFRSGSDMARQEATEQGQGICLLPDAMAHAVPGLARLEVDAPLPSCPVYLAYHRDRRNVPGVRAVIDALGAALADGLQLPAEKATVERP</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="74" xmlns="http://uniprot.org/uniprot">
    <accession>A9BTG9</accession>
    <name>A9BTG9_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">AAA ATPase central domain protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_2298</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX34937.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_2298"/>
    <dbReference type="PRIDE" id="A9BTG9"/>
    <dbReference type="EnsemblBacteria" id="ABX34937">
        <property type="protein sequence ID" value="ABX34937"/>
        <property type="gene ID" value="Daci_2298"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_2298"/>
    <dbReference type="eggNOG" id="COG0464">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_000688_25_1_4"/>
    <dbReference type="OMA" id="REGCAGN"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016887">
        <property type="term" value="F:ATP hydrolysis activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003593">
        <property type="entry name" value="AAA+_ATPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003959">
        <property type="entry name" value="ATPase_AAA_core"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013196">
        <property type="entry name" value="HTH_11"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00004">
        <property type="entry name" value="AAA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08279">
        <property type="entry name" value="HTH_11"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00382">
        <property type="entry name" value="AAA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="AAA" evidence="1">
        <location>
            <begin position="95"/>
            <end position="227"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="SMART" id="SM00382"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX34937.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="345" mass="38215" checksum="0A401B99D682D9F5" modified="2008-01-15" version="1">MRTRRFASLVRPSDESLASAIAPLVAGNAQHALRRAQPQLAAPVDADSKLPLVRTDPADMLRTEPMLTAKLKEQVDQLLREHQSADRLMAAGFTPVRSVLLSGPPGVGKTMTAGWLAYKLGLPLLTLDLASVMSSYLGKTGANVRAVLSHAQEQPCVLLLDEFDAIAKRRDDDSDVGELKRLVTVILQTIDDWQPTSLLVAATNHSDLLDPAVWRRFDVTLQFDLPNHKQRTALLVAGGVDPELAQVIAQQGEGRTLATLNRTINSAHKSALLNNTEFHYELCNMLLRHLESQEPSTKQLRDQRDLERFIKHKQGFTLREIADELDVSHTTVRRSIEKIKEGLNG</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="55" xmlns="http://uniprot.org/uniprot">
    <accession>A9BTW5</accession>
    <name>A9BTW5_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_2741</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX35379.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_003056221.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_2741"/>
    <dbReference type="PRIDE" id="A9BTW5"/>
    <dbReference type="EnsemblBacteria" id="ABX35379">
        <property type="protein sequence ID" value="ABX35379"/>
        <property type="gene ID" value="Daci_2741"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_2741"/>
    <dbReference type="eggNOG" id="COG2333">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_044335_0_0_4"/>
    <dbReference type="OMA" id="AEVAIWE"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.60.15.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036866">
        <property type="entry name" value="RibonucZ/Hydroxyglut_hydro"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56281">
        <property type="entry name" value="SSF56281"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="368"/>
            <end position="397"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX35379.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="397" mass="44423" checksum="A30EEE96485C28DE" modified="2008-01-15" version="1">MPTTITFFPVDNGDMTLIKFGDLDATTLLIDVNIRQDADDPDGEARDVAKDLRERLKKDENGRPYVDAFLLSHPDQDHCRGLKRHFYLGPLDKYPDDKKDDKDKKIVIREMWSSPIVFRRASKTHTLSDDAKAFNTEARRRVQLNRDKNFAVGNGDRIQIMGEDIDGKTDDLTSIVRKVDTRFSTINGKSSAFFSAFLLAPLDAQDDEEEEECLVKNQSSVILNITLAADAQTPDGAKFLTGGDAEVFIWNRQWQRHKAEADVLEYDIMQAPHHCSWHSLSYDSWSDYREKAKLDADARKALSQTRDGAVIVASCKPIADDDSDPPCIRAKREYVTIVDEAKGEFYCTGEYPSEKSVEPLVFTVTAQGVQPPSKKESGSKAAAVVTSARTPMPHGAS</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="53" xmlns="http://uniprot.org/uniprot">
    <accession>A9BTX4</accession>
    <name>A9BTX4_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_2750</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX35388.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012204598.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_2750"/>
    <dbReference type="PRIDE" id="A9BTX4"/>
    <dbReference type="EnsemblBacteria" id="ABX35388">
        <property type="protein sequence ID" value="ABX35388"/>
        <property type="gene ID" value="Daci_2750"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_2750"/>
    <dbReference type="eggNOG" id="ENOG5032ZXT">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_177815_0_0_4"/>
    <dbReference type="OMA" id="TAAWWAW"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR031044">
        <property type="entry name" value="Small_Trp_rich"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR04438">
        <property type="entry name" value="small_Trp_rich"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="26"/>
            <end position="43"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX35388.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="80" mass="9114" checksum="84B8FB1066DF6BB0" modified="2008-01-15" version="1">MYLLGIAVLLTLLKLADIEPVASWSWYVILGAYGVTAAWWAWADASGYTKRRAADKIEQRRLKRIEKNKEAMGTGTRSRR</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-05-25" version="90" xmlns="http://uniprot.org/uniprot">
    <accession>A9BU04</accession>
    <name>A9BU04_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Two component transcriptional regulator, LuxR family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ordered locus">Daci_3081</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="6" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX35719.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012204925.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_3081"/>
    <dbReference type="EnsemblBacteria" id="ABX35719">
        <property type="protein sequence ID" value="ABX35719"/>
        <property type="gene ID" value="Daci_3081"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_3081"/>
    <dbReference type="eggNOG" id="COG2197">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_000445_90_1_4"/>
    <dbReference type="OMA" id="QTGWEVC"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000160">
        <property type="term" value="P:phosphorelay signal transduction system"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006355">
        <property type="term" value="P:regulation of transcription, DNA-templated"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd06170">
        <property type="entry name" value="LuxR_C_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011006">
        <property type="entry name" value="CheY-like_superfamily"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016032">
        <property type="entry name" value="Sig_transdc_resp-reg_C-effctor"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001789">
        <property type="entry name" value="Sig_transdc_resp-reg_receiver"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000792">
        <property type="entry name" value="Tscrpt_reg_LuxR_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00196">
        <property type="entry name" value="GerE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00072">
        <property type="entry name" value="Response_reg"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00038">
        <property type="entry name" value="HTHLUXR"/>
    </dbReference>
    <dbReference type="SMART" id="SM00421">
        <property type="entry name" value="HTH_LUXR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00448">
        <property type="entry name" value="REC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46894">
        <property type="entry name" value="SSF46894"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52172">
        <property type="entry name" value="SSF52172"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50043">
        <property type="entry name" value="HTH_LUXR_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50110">
        <property type="entry name" value="RESPONSE_REGULATORY"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="2" id="KW-0597">Phosphoprotein</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Response regulatory" evidence="4">
        <location>
            <begin position="6"/>
            <end position="126"/>
        </location>
    </feature>
    <feature type="domain" description="HTH luxR-type" evidence="3">
        <location>
            <begin position="149"/>
            <end position="214"/>
        </location>
    </feature>
    <feature type="modified residue" description="4-aspartylphosphate" evidence="2">
        <location>
            <position position="57"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00169"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="PROSITE" id="PS50043"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="PROSITE" id="PS50110"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="ABX35719.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="217" mass="24318" checksum="87F57D929AC5A996" modified="2008-01-15" version="1">MKLKLRIAVVDDHAVVLLGVKDFLEQDPNLQVVATFSTPSSLMQYARSNPLDVVLTDYSMPGDDVYGDGLRYVDYLIRHFPDIKVLVLTTVSNPMIISALYDAGVAGVLLKEDPLTQIMAALQCVRLNARYYSPSFQADTPRQERSVFLAERANSLSPREFEVLRHFANGESITEIAARLRRSVKTVSLQKNSAMRKLNVDSNQDLAAFCAEHHLFD</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="84" xmlns="http://uniprot.org/uniprot">
    <accession>A9BU22</accession>
    <name>A9BU22_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Transcriptional regulator, AraC family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Daci_3099</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="4" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX35737.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012204938.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_3099"/>
    <dbReference type="PRIDE" id="A9BU22"/>
    <dbReference type="EnsemblBacteria" id="ABX35737">
        <property type="protein sequence ID" value="ABX35737"/>
        <property type="gene ID" value="Daci_3099"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_3099"/>
    <dbReference type="eggNOG" id="COG2207">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="eggNOG" id="COG3449">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_000445_81_1_4"/>
    <dbReference type="OMA" id="EYKGAWD"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003700">
        <property type="term" value="F:DNA-binding transcription factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043565">
        <property type="term" value="F:sequence-specific DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.20.80.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010499">
        <property type="entry name" value="AraC_E-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029442">
        <property type="entry name" value="GyrI-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009057">
        <property type="entry name" value="Homeobox-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018060">
        <property type="entry name" value="HTH_AraC"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018062">
        <property type="entry name" value="HTH_AraC-typ_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011256">
        <property type="entry name" value="Reg_factor_effector_dom_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF06445">
        <property type="entry name" value="GyrI-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12833">
        <property type="entry name" value="HTH_18"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00871">
        <property type="entry name" value="AraC_E_bind"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00342">
        <property type="entry name" value="HTH_ARAC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46689">
        <property type="entry name" value="SSF46689"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55136">
        <property type="entry name" value="SSF55136"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00041">
        <property type="entry name" value="HTH_ARAC_FAMILY_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01124">
        <property type="entry name" value="HTH_ARAC_FAMILY_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HTH araC/xylS-type" evidence="2">
        <location>
            <begin position="19"/>
            <end position="118"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS01124"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ABX35737.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="326" mass="36129" checksum="DE2341295352A30A" modified="2008-01-15" version="1">MTNKPSEQASRAEYARRINRVLNYIDAHLDQPLDGAHLADIANFSRFHFHRIFAAWMGETLGSYAQRRRLEKAAFRLSCGSKETVLETALATGFQSGEAFARAFKLKFGCTPSAWRSTTLERMKTQAAAIGQPPGSQQSNPDQVFGNLHQEDLRAFGEPQGSCHLKEEIAMDVRIIDLPKAHVAYQRLIGPYGPAIGQFWRGTIAPWMHSNGLSDQTCYGIGYDDPSLTPASKCRYDACVEVPAHFVASGQVDTQTLPGGRYAVARFKGKPEGLANAWMWLTREWMPSSGMQCDDRPCFEMFSAATAMDADTGEFCCDICIPVRAL</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="81" xmlns="http://uniprot.org/uniprot">
    <accession>A9BU28</accession>
    <name>A9BU28_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Transcriptional regulator, MarR family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_3105</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX35743.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012204944.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_3105"/>
    <dbReference type="PRIDE" id="A9BU28"/>
    <dbReference type="EnsemblBacteria" id="ABX35743">
        <property type="protein sequence ID" value="ABX35743"/>
        <property type="gene ID" value="Daci_3105"/>
    </dbReference>
    <dbReference type="GeneID" id="60687396"/>
    <dbReference type="KEGG" id="dac:Daci_3105"/>
    <dbReference type="eggNOG" id="COG1846">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_083287_27_5_4"/>
    <dbReference type="OMA" id="YEATMVT"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003700">
        <property type="term" value="F:DNA-binding transcription factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000835">
        <property type="entry name" value="HTH_MarR-typ"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036390">
        <property type="entry name" value="WH_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12802">
        <property type="entry name" value="MarR_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00598">
        <property type="entry name" value="HTHMARR"/>
    </dbReference>
    <dbReference type="SMART" id="SM00347">
        <property type="entry name" value="HTH_MARR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46785">
        <property type="entry name" value="SSF46785"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50995">
        <property type="entry name" value="HTH_MARR_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HTH marR-type" evidence="1">
        <location>
            <begin position="10"/>
            <end position="166"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS50995"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX35743.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="180" mass="20129" checksum="9F51F0C51D822B53" modified="2008-01-15" version="1">MPKPTLPRLPDRVDTILEQWARERPDLDASPMGPIGRIKRCAALLEQRLEECFARFGMTMWEFDVLATLRRSGAPFCLTPTALFSTLMVTSGTMTHRMKSLETRGLVQRLPNPQDARSMLVQLTDQGLELIDRAVEAHLDNERAMLAPMPVAELAALDQRLSQLLRVLEGGPDEGTRPAP</sequence>
</entry>
<entry dataset="Swiss-Prot" created="2008-09-02" modified="2022-08-03" version="73" xmlns="http://uniprot.org/uniprot">
    <accession>A9BUB4</accession>
    <name>Y1172_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">PKHD-type hydroxylase Daci_1172</fullName>
            <ecNumber evidence="1">1.14.11.-</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name type="ordered locus">Daci_1172</name>
    </gene>
    <organism>
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference key="1">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain>DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>Fe(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29033"/>
        </cofactor>
        <text evidence="1">Binds 1 Fe(2+) ion per subunit.</text>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>L-ascorbate</name>
            <dbReference type="ChEBI" id="CHEBI:38290"/>
        </cofactor>
    </comment>
    <dbReference type="EC" id="1.14.11.-" evidence="1"/>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX33817.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012203103.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A9BUB4"/>
    <dbReference type="SMR" id="A9BUB4"/>
    <dbReference type="STRING" id="398578.Daci_1172"/>
    <dbReference type="PRIDE" id="A9BUB4"/>
    <dbReference type="EnsemblBacteria" id="ABX33817">
        <property type="protein sequence ID" value="ABX33817"/>
        <property type="gene ID" value="Daci_1172"/>
    </dbReference>
    <dbReference type="GeneID" id="60685740"/>
    <dbReference type="KEGG" id="dac:Daci_1172"/>
    <dbReference type="eggNOG" id="COG3128">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_106663_0_0_4"/>
    <dbReference type="OMA" id="ESFGYHV"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016706">
        <property type="term" value="F:2-oxoglutarate-dependent dioxygenase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005506">
        <property type="term" value="F:iron ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0031418">
        <property type="term" value="F:L-ascorbic acid binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00657">
        <property type="entry name" value="Hydroxyl_YbiX"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005123">
        <property type="entry name" value="Oxoglu/Fe-dep_dioxygenase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041097">
        <property type="entry name" value="PKHD_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023550">
        <property type="entry name" value="PKHD_hydroxylase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006620">
        <property type="entry name" value="Pro_4_hyd_alph"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR044862">
        <property type="entry name" value="Pro_4_hyd_alph_FE2OG_OXY"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR41536">
        <property type="entry name" value="PTHR41536"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13640">
        <property type="entry name" value="2OG-FeII_Oxy_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF18331">
        <property type="entry name" value="PKHD_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00702">
        <property type="entry name" value="P4Hc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51471">
        <property type="entry name" value="FE2OG_OXY"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword id="KW-0223">Dioxygenase</keyword>
    <keyword id="KW-0408">Iron</keyword>
    <keyword id="KW-0479">Metal-binding</keyword>
    <keyword id="KW-0560">Oxidoreductase</keyword>
    <keyword id="KW-1185">Reference proteome</keyword>
    <keyword id="KW-0847">Vitamin C</keyword>
    <feature type="chain" id="PRO_0000346478" description="PKHD-type hydroxylase Daci_1172">
        <location>
            <begin position="1"/>
            <end position="226"/>
        </location>
    </feature>
    <feature type="domain" description="Fe2OG dioxygenase" evidence="1">
        <location>
            <begin position="78"/>
            <end position="178"/>
        </location>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <position position="96"/>
        </location>
        <ligand>
            <name>Fe cation</name>
            <dbReference type="ChEBI" id="CHEBI:24875"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <position position="98"/>
        </location>
        <ligand>
            <name>Fe cation</name>
            <dbReference type="ChEBI" id="CHEBI:24875"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <position position="159"/>
        </location>
        <ligand>
            <name>Fe cation</name>
            <dbReference type="ChEBI" id="CHEBI:24875"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <position position="169"/>
        </location>
        <ligand>
            <name>2-oxoglutarate</name>
            <dbReference type="ChEBI" id="CHEBI:16810"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000255" key="1">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00657"/>
        </source>
    </evidence>
    <sequence length="226" mass="24756" checksum="3118ECBFAB07A32A" modified="2008-01-15" version="1">MMLRIPALLSPDEVRQCRQALEQAPWQDGRATAGPLAAQVKANLQLPLDSQAGQAIGNLILDKLGASALFMSATLPLKVLPPRFNRYEGGGTYGNHIDNAIFTIPGTAIKVRSDVSTTVFFSEPDEYEGGELIVEDTFGHQSVKLAAGDAIVYPGTSLHRVNPVTRGTRYASFFWTHSLVASDEKRRILFDLDQQIQQLTVRHPGDPALSALSGTYHNLLRMWSQA</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="79" xmlns="http://uniprot.org/uniprot">
    <accession>A9BUI6</accession>
    <name>A9BUI6_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Anti-FecI sigma factor, FecR</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ordered locus">Daci_1450</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="6" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX34094.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012203380.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_1450"/>
    <dbReference type="PRIDE" id="A9BUI6"/>
    <dbReference type="EnsemblBacteria" id="ABX34094">
        <property type="protein sequence ID" value="ABX34094"/>
        <property type="gene ID" value="Daci_1450"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_1450"/>
    <dbReference type="eggNOG" id="COG1595">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="eggNOG" id="COG3712">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_628099_0_0_4"/>
    <dbReference type="OMA" id="WREGWLD"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016987">
        <property type="term" value="F:sigma factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006352">
        <property type="term" value="P:DNA-templated transcription, initiation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0050896">
        <property type="term" value="P:response to stimulus"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006860">
        <property type="entry name" value="FecR"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012373">
        <property type="entry name" value="Ferrdict_sens_TM"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014284">
        <property type="entry name" value="RNA_pol_sigma-70_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007627">
        <property type="entry name" value="RNA_pol_sigma70_r2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013249">
        <property type="entry name" value="RNA_pol_sigma70_r4_t2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013325">
        <property type="entry name" value="RNA_pol_sigma_r2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013324">
        <property type="entry name" value="RNA_pol_sigma_r3/r4-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30273">
        <property type="entry name" value="PTHR30273"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04773">
        <property type="entry name" value="FecR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04542">
        <property type="entry name" value="Sigma70_r2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08281">
        <property type="entry name" value="Sigma70_r4_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF88659">
        <property type="entry name" value="SSF88659"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF88946">
        <property type="entry name" value="SSF88946"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR02937">
        <property type="entry name" value="sigma70-ECF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Sigma70_r2" evidence="2">
        <location>
            <begin position="18"/>
            <end position="88"/>
        </location>
    </feature>
    <feature type="domain" description="Sigma70_r4_2" evidence="4">
        <location>
            <begin position="125"/>
            <end position="170"/>
        </location>
    </feature>
    <feature type="domain" description="FecR" evidence="3">
        <location>
            <begin position="228"/>
            <end position="319"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="86"/>
            <end position="111"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="419"/>
            <end position="440"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF04542"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF04773"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="Pfam" id="PF08281"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="ABX34094.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="440" mass="47980" checksum="960356CA92DFCEF8" modified="2008-01-15" version="1">MPAPASSSSSLLSTFQDSYHELVRFVARRAGPQAARDLVHDAWIRLAERQRGESDAPAAPDSPPGASRAYLYAVMENIAIDHLRHGQRTAERFDTSAREGEPPSPLSPDVADTHSYRQALAGVEGALAQLPARCRDIFLADRIEGASHAELAERHGVSVKTVEREVMRAMDSVEAALRRWRGETAAPAPRTGRRRALSTLLGMAGLGVGSPAIWLAWRQWMPQYQVRLATATGRLLNQPLPDGSSLTLDAASRAEVDFYATRRQVRLLAGSAFFAVARDTEWPFMVQAADVQVTVLGTRFEVALEDDAVLVAVDAGRVQVRDGSGAPHELGAGQMLRLAPGQTAAVQTVAAVAAWREGWLDFQNTPLAEVVRRLERYSLQPLRVEPDAAALPVLGRVRIAAAQGWLRMLPRTLPVSVQEEVQEKEQGPGTGRTLVIRRRS</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2021-06-02" version="64" xmlns="http://uniprot.org/uniprot">
    <accession>A9BUU7</accession>
    <name>A9BUU7_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Malonate decarboxylase acyl carrier protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ordered locus">Daci_1767</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="5" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="PTM">
        <text evidence="3">Covalently binds the prosthetic group of malonate decarboxylase.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX34409.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012203694.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_1767"/>
    <dbReference type="EnsemblBacteria" id="ABX34409">
        <property type="protein sequence ID" value="ABX34409"/>
        <property type="gene ID" value="Daci_1767"/>
    </dbReference>
    <dbReference type="GeneID" id="60686193"/>
    <dbReference type="KEGG" id="dac:Daci_1767"/>
    <dbReference type="eggNOG" id="COG3052">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_173135_0_0_4"/>
    <dbReference type="OMA" id="KLSFRHT"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00710">
        <property type="entry name" value="Malonate_deCO2ase_dsu"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023439">
        <property type="entry name" value="Mal_deCO2ase/Cit_lyase_ACP"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009662">
        <property type="entry name" value="Malonate_deCO2ase_dsu"/>
    </dbReference>
    <dbReference type="Pfam" id="PF06857">
        <property type="entry name" value="ACP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR03130">
        <property type="entry name" value="malonate_delta"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="3" id="KW-0597">Phosphoprotein</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="modified residue" description="O-(phosphoribosyl dephospho-coenzyme A)serine" evidence="3">
        <location>
            <position position="34"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004496"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022490"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="PIRSR" id="PIRSR609662-50"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="ABX34409.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="110" mass="11253" checksum="AFA4F18EF8E683F5" modified="2008-01-15" version="1">MSEIPAGLESLSYCFAGGRPAGAFAPVLVGVVGSGNLEVMLESTGGDGCEVQVQTSAHGFGAIWQAVVEDFRERHPVGGVRVSINDMGATPAVVSLRLDQALAELQGGQP</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="47" xmlns="http://uniprot.org/uniprot">
    <accession>A9BV28</accession>
    <name>A9BV28_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Daci_1850</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="2" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX34490.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012203775.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_1850"/>
    <dbReference type="PRIDE" id="A9BV28"/>
    <dbReference type="EnsemblBacteria" id="ABX34490">
        <property type="protein sequence ID" value="ABX34490"/>
        <property type="gene ID" value="Daci_1850"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_1850"/>
    <dbReference type="eggNOG" id="COG2309">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_067564_0_0_4"/>
    <dbReference type="OMA" id="TCHIDIP"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ABX34490.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="361" mass="39232" checksum="41636E7262F27ADB" modified="2008-01-15" version="1">MSVSDIDLIHAWKQVLTLSRLEAGQTVTVLTGADTHPQTLRCAIAASSEMGARVNRLDLPPVNAEKSLSRDSLAYLGTTPLTGNPAAIAALKASDLVLDLMTLLFSPEQHEILQTGTKILLAVEPPEVLCRLVPTEGDRARVQAASKLIEAAGQMHITSAAGTDLRCRLGSFPAICEYGFVDQPGRWDHWPSGFVLTWPDEGESNGRVVLDRGDILLPMKDYVTEPIELVIEKGYVTRISGGLQADILKEYMASYEDPEAYAVSHIGWGLQPRAHWSMLAHYNKETHIGMDARAFEGNFLWSMGPNNEAGGSRTTACHIDIPMRHCSVALDGKPTVIDGVVQDEEGLARAAKRSKQGKDIA</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="64" xmlns="http://uniprot.org/uniprot">
    <accession>A9BV86</accession>
    <name>A9BV86_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Urate catabolism protein</fullName>
            <ecNumber evidence="2">3.5.1.41</ecNumber>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_2110</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EC" id="3.5.1.41" evidence="2"/>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX34750.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012204033.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_2110"/>
    <dbReference type="PRIDE" id="A9BV86"/>
    <dbReference type="EnsemblBacteria" id="ABX34750">
        <property type="protein sequence ID" value="ABX34750"/>
        <property type="gene ID" value="Daci_2110"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_2110"/>
    <dbReference type="eggNOG" id="COG0726">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_029940_0_0_4"/>
    <dbReference type="OMA" id="DDLPYWE"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004099">
        <property type="term" value="F:chitin deacetylase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005975">
        <property type="term" value="P:carbohydrate metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd10977">
        <property type="entry name" value="CE4_PuuE_SpCDA1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011330">
        <property type="entry name" value="Glyco_hydro/deAcase_b/a-brl"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002509">
        <property type="entry name" value="NODB_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017625">
        <property type="entry name" value="PuuE/SpCDA1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01522">
        <property type="entry name" value="Polysacc_deac_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF88713">
        <property type="entry name" value="SSF88713"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR03212">
        <property type="entry name" value="uraD_N-term-dom"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51677">
        <property type="entry name" value="NODB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="NodB homology" evidence="1">
        <location>
            <begin position="72"/>
            <end position="301"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS51677"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX34750.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="318" mass="36590" checksum="4222C944FA85CC62" modified="2008-01-15" version="1">MTYDATAPYPRDLIGYGRTPPHARWPGQARVAVQFVLNYEEGGENCVLHGDAASEQFLSEMFNPAAYPERHMSMEGIYEYGSRAGVWRILREFEKRGLPLTVFGVATALQKHRELAQAFDELGHEVACHGLKWIHYQNIPAEIEREHMRQCMEIFGELYGHDGDHGLGWYTGRDSPNTHRLVADDGRFAYDSDYYGDDLPFWMKVGRSDGSTRSQLIVPYTLDCNDMRFALPQGYSHADPFFQYLKDTFDALYAEGDPAGDDSPKMMSIGMHCRLLGRPGRITALQRFLDHIQRHDKVWVCRRIDLARHWAHHHPDKE</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="73" xmlns="http://uniprot.org/uniprot">
    <accession>A9BV97</accession>
    <name>A9BV97_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="7">5-hydroxyisourate hydrolase</fullName>
            <shortName evidence="7">HIU hydrolase</shortName>
            <shortName evidence="7">HIUHase</shortName>
            <ecNumber evidence="7">3.5.2.17</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="9" type="ordered locus">Daci_2121</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="9 10" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="10" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="2">Catalyzes the hydrolysis of 5-hydroxyisourate (HIU) to 2-oxo-4-hydroxy-4-carboxy-5-ureidoimidazoline (OHCU).</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1 7">
            <text>5-hydroxyisourate + H2O = 5-hydroxy-2-oxo-4-ureido-2,5-dihydro-1H-imidazole-5-carboxylate + H(+)</text>
            <dbReference type="Rhea" id="RHEA:23736"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:18072"/>
            <dbReference type="ChEBI" id="CHEBI:58639"/>
            <dbReference type="EC" id="3.5.2.17"/>
        </reaction>
    </comment>
    <comment type="subunit">
        <text evidence="7">Homotetramer.</text>
    </comment>
    <comment type="similarity">
        <text evidence="3 7">Belongs to the transthyretin family. 5-hydroxyisourate hydrolase subfamily.</text>
    </comment>
    <dbReference type="EC" id="3.5.2.17" evidence="7"/>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX34761.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012204044.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_2121"/>
    <dbReference type="PRIDE" id="A9BV97"/>
    <dbReference type="EnsemblBacteria" id="ABX34761">
        <property type="protein sequence ID" value="ABX34761"/>
        <property type="gene ID" value="Daci_2121"/>
    </dbReference>
    <dbReference type="GeneID" id="60686519"/>
    <dbReference type="KEGG" id="dac:Daci_2121"/>
    <dbReference type="eggNOG" id="COG2351">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_115536_1_1_4"/>
    <dbReference type="OMA" id="ENQNYHI"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0033971">
        <property type="term" value="F:hydroxyisourate hydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006144">
        <property type="term" value="P:purine nucleobase metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd05822">
        <property type="entry name" value="TLP_HIUase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.40.180">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014306">
        <property type="entry name" value="Hydroxyisourate_hydrolase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023418">
        <property type="entry name" value="Thyroxine_BS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000895">
        <property type="entry name" value="Transthyretin/HIU_hydrolase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023416">
        <property type="entry name" value="Transthyretin/HIU_hydrolase_d"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036817">
        <property type="entry name" value="Transthyretin/HIU_hydrolase_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023419">
        <property type="entry name" value="Transthyretin_CS"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10395">
        <property type="entry name" value="PTHR10395"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00576">
        <property type="entry name" value="Transthyretin"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00189">
        <property type="entry name" value="TRNSTHYRETIN"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF49472">
        <property type="entry name" value="SSF49472"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR02962">
        <property type="entry name" value="hdxy_isourate"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00768">
        <property type="entry name" value="TRANSTHYRETIN_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00769">
        <property type="entry name" value="TRANSTHYRETIN_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5 7 9" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="4 7" id="KW-0659">Purine metabolism</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="TR_THY" evidence="8">
        <location>
            <begin position="3"/>
            <end position="115"/>
        </location>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <position position="6"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <position position="44"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <position position="113"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001043"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00002704"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00009850"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022631"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="PIRSR" id="PIRSR600895-51"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="RuleBase" id="RU361270"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="Pfam" id="PF00576"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="ABX34761.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="116" mass="12662" checksum="CCB34CA709A47EF9" modified="2008-01-15" version="1">MGLSTHVLDTMNGCPAAGMAVALYSTDGDQATLIKSLVLNHDGRTDAPLFDNNSLRTGTYRLTFDVAAYFKARGVQLPEPNFLNKVSLDFGVAHADQHYHVPLLVSPWSYSTYRGS</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="56" xmlns="http://uniprot.org/uniprot">
    <accession>A9BVC2</accession>
    <name>A9BVC2_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Basic membrane lipoprotein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ordered locus">Daci_2146</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="5" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX34786.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012204069.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_2146"/>
    <dbReference type="PRIDE" id="A9BVC2"/>
    <dbReference type="EnsemblBacteria" id="ABX34786">
        <property type="protein sequence ID" value="ABX34786"/>
        <property type="gene ID" value="Daci_2146"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_2146"/>
    <dbReference type="eggNOG" id="COG1744">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_038813_2_0_4"/>
    <dbReference type="OMA" id="NARYYEG"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003760">
        <property type="entry name" value="PnrA-like"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02608">
        <property type="entry name" value="Bmp"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-0449">Lipoprotein</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1 2" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="2">
        <location>
            <begin position="1"/>
            <end position="20"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5002735126" evidence="2">
        <location>
            <begin position="21"/>
            <end position="368"/>
        </location>
    </feature>
    <feature type="domain" description="Bmp" evidence="3">
        <location>
            <begin position="36"/>
            <end position="318"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022729"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF02608"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="ABX34786.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="368" mass="39871" checksum="4B9ED77EF78C4BC6" modified="2008-01-15" version="1">MYKNLAAAVAAASLVSTALSQGHPAPSSPAGSAPLKAAFVYLTPVLDAGWTRQHDEGRRALQAALGPRVQTRAVDSVPEGPDAERVLRDLAASGNQLIFTTSFGYTESVMRVARDFPQVKFESVTGFKRADNVATSNARYYEGRYLSGIAAGRASKTGVAGFVVGFPIPEVLQGINAFTLGMRSVNPKATVKVVWLDTWFDPPRERDAAMALFNGGVDVVSFQVASTAVMQAAQERGRMAIAYHSDMRKDGPDAQLLAVTHQWGDYYTARARAVLDGSWKSQDTWGGVREGMIRVEGFGPKLPPAVREEVLQRQKDMAQGRLQPFKAGDQPVRDNQGQVRIPAGKQLDDAQILQMNWLVEGVQATLPK</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="58" xmlns="http://uniprot.org/uniprot">
    <accession>A9BVH1</accession>
    <name>A9BVH1_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">HTH-type transcriptional regulator</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Daci_2400</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="4" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the GbsR family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX35038.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012204320.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_2400"/>
    <dbReference type="PRIDE" id="A9BVH1"/>
    <dbReference type="EnsemblBacteria" id="ABX35038">
        <property type="protein sequence ID" value="ABX35038"/>
        <property type="gene ID" value="Daci_2400"/>
    </dbReference>
    <dbReference type="GeneID" id="60686772"/>
    <dbReference type="KEGG" id="dac:Daci_2400"/>
    <dbReference type="eggNOG" id="COG1510">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_107540_0_0_4"/>
    <dbReference type="OMA" id="MYMRDEM"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003700">
        <property type="term" value="F:DNA-binding transcription factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd00090">
        <property type="entry name" value="HTH_ARSR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011991">
        <property type="entry name" value="ArsR-like_HTH"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000835">
        <property type="entry name" value="HTH_MarR-typ"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR026282">
        <property type="entry name" value="MJ1563"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036390">
        <property type="entry name" value="WH_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12802">
        <property type="entry name" value="MarR_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF006707">
        <property type="entry name" value="MJ1563"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46785">
        <property type="entry name" value="SSF46785"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="1" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0804">Transcription</keyword>
    <keyword evidence="1" id="KW-0805">Transcription regulation</keyword>
    <feature type="domain" description="HTH marR-type" evidence="2">
        <location>
            <begin position="33"/>
            <end position="88"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="PIRNR" id="PIRNR006707"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF12802"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ABX35038.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="198" mass="23178" checksum="876F06A83E62FB2E" modified="2008-01-15" version="1">MHAMTQSKPLPALNRQFVSHFGEMGSRWGINRTVGQIYALLFLSPEPLNADQIAETLEFSRSNVSMGLKELQAWRLVQLRHQPGDRREYFEAPQDVWEIFRRLAEERRRREIEPTQSMLRAAMLEEVTTEEERYAQQRMRDMYELIDRLMNWFDDVQRLSPETAMQLMGMGTAVTRLLDLKDRITGGKGRAKADDTDD</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="58" xmlns="http://uniprot.org/uniprot">
    <accession>A9BVI8</accession>
    <name>A9BVI8_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="3">RND efflux system, outer membrane lipoprotein, NodT family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Daci_2417</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="4" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="2">Cell membrane</location>
            <topology evidence="2">Lipid-anchor</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="1 2">Belongs to the outer membrane factor (OMF) (TC 1.B.17) family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX35055.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012204337.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_2417"/>
    <dbReference type="PRIDE" id="A9BVI8"/>
    <dbReference type="EnsemblBacteria" id="ABX35055">
        <property type="protein sequence ID" value="ABX35055"/>
        <property type="gene ID" value="Daci_2417"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_2417"/>
    <dbReference type="eggNOG" id="COG1538">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_012817_13_1_4"/>
    <dbReference type="OMA" id="YANYQQA"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015562">
        <property type="term" value="F:efflux transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003423">
        <property type="entry name" value="OMP_efflux"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010131">
        <property type="entry name" value="RND_efflux_OM_lipoprot_NodT"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02321">
        <property type="entry name" value="OEP"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01845">
        <property type="entry name" value="outer_NodT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2 3" id="KW-0449">Lipoprotein</keyword>
    <keyword evidence="2" id="KW-0472">Membrane</keyword>
    <keyword evidence="2" id="KW-0564">Palmitate</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0732">Signal</keyword>
    <keyword evidence="2" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="2" id="KW-1134">Transmembrane beta strand</keyword>
    <feature type="signal peptide" evidence="2">
        <location>
            <begin position="1"/>
            <end position="29"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5001436693" evidence="2">
        <location>
            <begin position="30"/>
            <end position="479"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00007613"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="RuleBase" id="RU362097"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ABX35055.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="479" mass="49814" checksum="4E0A2BCA2B2615B6" modified="2008-01-15" version="1">MTSPRFPRTVTAALCAAVLAGCASGPAYVKPAMELPAAYSELPGWTQARPDAEGPKGDWWTAFSDPLLDELGPQVAVSNQNVRLAYANYQKATAAIQAARAALFPTLGINASASRQQAGSGGPATSKSVQAAVSWSPDLWGQVRDSVQQSQALAQVSAATLANATLSAQVALATAVMELRVSDENARLLQRAVDSYRESLRVVTEQDSAGTVPPSNLYAARTQLETAQASLVAVGMARAQYAHAIAVLVGKTPEEMQIAPAPTMPDLPDVPVGLPSTLLQRRPDIAAAERQMAADNAAIGVAHAAFYPSVTLSAAGGLAGALGASNLIWSLGASLAASIFDGGARSAQLNEARAQYDASVASYRGTVLTALQDVENDLSSLRILQQQHQVLDAAVQDATQSARIALNEYEAGTVDYTTLATAQATQISNQQSRLNVRLQQLVSTVTLIGDLGGGWDAARLDAMVPPHAADAKRPGSAQP</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="84" xmlns="http://uniprot.org/uniprot">
    <accession>A9BVQ8</accession>
    <name>A9BVQ8_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="8">Coproporphyrinogen-III oxidase</fullName>
            <ecNumber evidence="8">1.3.98.3</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="12" type="ordered locus">Daci_2783</name>
    </gene>
    <organism evidence="12 13">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="12 13" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="13">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="13" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="13">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="7">Involved in the heme biosynthesis. Catalyzes the anaerobic oxidative decarboxylation of propionate groups of rings A and B of coproporphyrinogen III to yield the vinyl groups in protoporphyrinogen IX.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1 8">
            <text>coproporphyrinogen III + 2 S-adenosyl-L-methionine = 2 5'-deoxyadenosine + 2 CO2 + 2 L-methionine + protoporphyrinogen IX</text>
            <dbReference type="Rhea" id="RHEA:15425"/>
            <dbReference type="ChEBI" id="CHEBI:16526"/>
            <dbReference type="ChEBI" id="CHEBI:17319"/>
            <dbReference type="ChEBI" id="CHEBI:57307"/>
            <dbReference type="ChEBI" id="CHEBI:57309"/>
            <dbReference type="ChEBI" id="CHEBI:57844"/>
            <dbReference type="ChEBI" id="CHEBI:59789"/>
            <dbReference type="EC" id="1.3.98.3"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="8 10">
            <name>[4Fe-4S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:49883"/>
        </cofactor>
        <text evidence="8 10">Binds 1 [4Fe-4S] cluster. The cluster is coordinated with 3 cysteines and an exchangeable S-adenosyl-L-methionine.</text>
    </comment>
    <comment type="pathway">
        <text evidence="3 8">Porphyrin-containing compound metabolism; protoporphyrin-IX biosynthesis; protoporphyrinogen-IX from coproporphyrinogen-III (AdoMet route): step 1/1.</text>
    </comment>
    <comment type="subunit">
        <text evidence="5">Monomer.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="2 8">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="4 8">Belongs to the anaerobic coproporphyrinogen-III oxidase family.</text>
    </comment>
    <dbReference type="EC" id="1.3.98.3" evidence="8"/>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX35421.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012204631.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_2783"/>
    <dbReference type="PRIDE" id="A9BVQ8"/>
    <dbReference type="EnsemblBacteria" id="ABX35421">
        <property type="protein sequence ID" value="ABX35421"/>
        <property type="gene ID" value="Daci_2783"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_2783"/>
    <dbReference type="eggNOG" id="COG0635">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_027579_3_0_4"/>
    <dbReference type="OMA" id="HILNLMC"/>
    <dbReference type="UniPathway" id="UPA00251">
        <property type="reaction ID" value="UER00323"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051539">
        <property type="term" value="F:4 iron, 4 sulfur cluster binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051989">
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</entry>
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        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
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            <strain evidence="3">DSM 14801 / SPH-1</strain>
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    </reference>
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        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
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                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
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                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
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        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
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            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
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    </dbReference>
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        <location>
            <begin position="2"/>
            <end position="50"/>
        </location>
    </feature>
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        <source>
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    </evidence>
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        <source>
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        </source>
    </evidence>
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        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="65" mass="7105" checksum="552D33955F2757C6" modified="2008-01-15" version="1">MKLTFPKGASLADPQHLFNASLEGKVRRAIDIREGEEIDAQAFKDLVREAAALNEAAARKRSPKG</sequence>
</entry>
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    <name>A9BWH0_DELAS</name>
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        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
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            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="5" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
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                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
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                <person name="Pitluck S."/>
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                <person name="Larimer F."/>
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                <person name="Hauser L."/>
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                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
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        <property type="protein sequence ID" value="ABX36190.1"/>
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        <property type="protein sequence ID" value="ABX36190"/>
        <property type="gene ID" value="Daci_3556"/>
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    </dbReference>
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        <property type="term" value="F:lysozyme activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0019835">
        <property type="term" value="P:cytolysis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0042742">
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        <property type="project" value="UniProtKB-KW"/>
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        <property type="match status" value="1"/>
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        <property type="entry name" value="Endolysin_T4_type"/>
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    </dbReference>
    <dbReference type="InterPro" id="IPR023347">
        <property type="entry name" value="Lysozyme_dom_sf"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53955">
        <property type="entry name" value="SSF53955"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="1" id="KW-0929">Antimicrobial</keyword>
    <keyword evidence="2" id="KW-0081">Bacteriolytic enzyme</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="3">
        <location>
            <begin position="1"/>
            <end position="61"/>
        </location>
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    <feature type="region of interest" description="Disordered" evidence="3">
        <location>
            <begin position="110"/>
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    </feature>
    <feature type="region of interest" description="Disordered" evidence="3">
        <location>
            <begin position="195"/>
            <end position="223"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="3">
        <location>
            <begin position="111"/>
            <end position="157"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022529"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022638"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="ABX36190.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="401" mass="41210" checksum="965C7E19663A769C" modified="2008-01-15" version="1">MEGVARASTEGAIAGGVMGAGANVSGGANRRARQADQQGRQRAEDAAARRTAGPCGRRARRCQGLVARQRDRGGGGRCAGPDSGAGGRAVCLGGGAARMAPLVGFASAVRPRKHRGHEETPRIPARADGHPPAPERRAAAGPDRRRDAHHAGRRRDRGVQGLGLAAQRVAGHCLAGVHRAPGRLSGLEVAPGLPAGPAAARRPRAAGGPGPAAARAGNRPGAVDMTGPRMPAALLRKGAIPATLLAALTSPLAFQTLERWEGNVLQVYADHLAGGLPTYCAGRTDPTAVVGTKLTSDQCQSINKTTLLEYGYAVLGCVNWDYLTARRLIGLTVFAINVGKDGACGSQAVRQINAGAVDAGCDLIASTPDGRPNWSYAGGVFVQGLQNRRQAERALCLEGLP</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="67" xmlns="http://uniprot.org/uniprot">
    <accession>A9BWR0</accession>
    <name>A9BWR0_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">Protein-L-isoaspartate O-methyltransferase</fullName>
        </recommendedName>
        <alternativeName>
            <fullName evidence="5">L-isoaspartyl protein carboxyl methyltransferase</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="3">Protein L-isoaspartyl methyltransferase</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="4">Protein-beta-aspartate methyltransferase</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="6" type="ordered locus">Daci_3956</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="7" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the methyltransferase superfamily. L-isoaspartyl/D-aspartyl protein methyltransferase family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX36587.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012205781.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_3956"/>
    <dbReference type="PRIDE" id="A9BWR0"/>
    <dbReference type="EnsemblBacteria" id="ABX36587">
        <property type="protein sequence ID" value="ABX36587"/>
        <property type="gene ID" value="Daci_3956"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_3956"/>
    <dbReference type="eggNOG" id="COG2518">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_055432_2_1_4"/>
    <dbReference type="OMA" id="MVDTQVR"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004719">
        <property type="term" value="F:protein-L-isoaspartate (D-aspartate) O-methyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.150">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000682">
        <property type="entry name" value="PCMT"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029063">
        <property type="entry name" value="SAM-dependent_MTases_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11579">
        <property type="entry name" value="PTHR11579"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53335">
        <property type="entry name" value="SSF53335"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="6" id="KW-0489">Methyltransferase</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="6" id="KW-0808">Transferase</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00005369"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00013346"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00030757"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00031323"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00031350"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="ABX36587.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="236" mass="25576" checksum="9DB2867840EDCE7C" modified="2008-01-15" version="1">MSLPLNSLPEHHSAQAHARYNMIEQQIRPWNVLDEEVLALLGKVHRENFVPPEHAGLAFMDLEIPLVAPAEEAAAKGWCMLAPRIESRMLQDLKIKPTDRVLEIGAGSGYMAALLAAQAKEVVTLEIVPELAEMARENLLGAGITNAEVKLADGATAAAALGQFDAIVLSGSVAQVPQALLAQLNDGGRLAAIVGQLPMMRFTLVQKNGHQFETSQPWDVVTARLANFEEPSRFTF</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="55" xmlns="http://uniprot.org/uniprot">
    <accession>A9BWS1</accession>
    <name>A9BWS1_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Isochorismatase hydrolase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Daci_3967</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="4" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX36598.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012205792.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_3967"/>
    <dbReference type="PRIDE" id="A9BWS1"/>
    <dbReference type="EnsemblBacteria" id="ABX36598">
        <property type="protein sequence ID" value="ABX36598"/>
        <property type="gene ID" value="Daci_3967"/>
    </dbReference>
    <dbReference type="GeneID" id="60688290"/>
    <dbReference type="KEGG" id="dac:Daci_3967"/>
    <dbReference type="eggNOG" id="COG1335">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_066901_0_1_4"/>
    <dbReference type="OMA" id="LIVTEHY"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016787">
        <property type="term" value="F:hydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.850">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000868">
        <property type="entry name" value="Isochorismatase-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036380">
        <property type="entry name" value="Isochorismatase-like_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00857">
        <property type="entry name" value="Isochorismatase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52499">
        <property type="entry name" value="SSF52499"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Isochorismatase" evidence="2">
        <location>
            <begin position="9"/>
            <end position="177"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="88"/>
            <end position="109"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF00857"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ABX36598.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="200" mass="21989" checksum="CA74F68E97953C94" modified="2008-01-15" version="1">MLLEATDSQLVLVDYQERLMPAIFEGPAVLANAVKLARLAQLVDVPVFGTEQNPSRLGANDAELRALCDRTLSKMHFSAVAEGLGEWLRPPARPQGGNARSLPKHLQKPQQQAPERSMVVIAGCEAHVCLLQTALELLEDEFDVWVVTDACSSRTERNRDAAFDRLAGAGAELVTTEMVAFEWLRSCEHPAFKDLLALVK</sequence>
</entry>
<entry dataset="Swiss-Prot" created="2009-04-14" modified="2022-08-03" version="76" xmlns="http://uniprot.org/uniprot">
    <accession>A9BWU9</accession>
    <name>HSCA_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Chaperone protein HscA homolog</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="1" type="primary">hscA</name>
        <name type="ordered locus">Daci_3995</name>
    </gene>
    <organism>
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference key="1">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain>DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="1">Chaperone involved in the maturation of iron-sulfur cluster-containing proteins. Has a low intrinsic ATPase activity which is markedly stimulated by HscB.</text>
    </comment>
    <comment type="similarity">
        <text evidence="1">Belongs to the heat shock protein 70 family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX36626.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012205820.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A9BWU9"/>
    <dbReference type="SMR" id="A9BWU9"/>
    <dbReference type="STRING" id="398578.Daci_3995"/>
    <dbReference type="PRIDE" id="A9BWU9"/>
    <dbReference type="EnsemblBacteria" id="ABX36626">
        <property type="protein sequence ID" value="ABX36626"/>
        <property type="gene ID" value="Daci_3995"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_3995"/>
    <dbReference type="eggNOG" id="COG0443">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_005965_2_3_4"/>
    <dbReference type="OMA" id="PDPHQRR"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016887">
        <property type="term" value="F:ATP hydrolysis activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0140662">
        <property type="term" value="F:ATP-dependent protein folding chaperone"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051082">
        <property type="term" value="F:unfolded protein binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016226">
        <property type="term" value="P:iron-sulfur cluster assembly"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd10236">
        <property type="entry name" value="HscA_like_NBD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.1270.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.34.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00679">
        <property type="entry name" value="HscA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043129">
        <property type="entry name" value="ATPase_NBD"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018181">
        <property type="entry name" value="Heat_shock_70_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR042039">
        <property type="entry name" value="HscA_NBD"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029048">
        <property type="entry name" value="HSP70_C_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029047">
        <property type="entry name" value="HSP70_peptide-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013126">
        <property type="entry name" value="Hsp_70_fam"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010236">
        <property type="entry name" value="ISC_FeS_clus_asmbl_HscA"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR19375">
        <property type="entry name" value="PTHR19375"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00012">
        <property type="entry name" value="HSP70"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF100920">
        <property type="entry name" value="SSF100920"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF100934">
        <property type="entry name" value="SSF100934"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53067">
        <property type="entry name" value="SSF53067"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01991">
        <property type="entry name" value="HscA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00297">
        <property type="entry name" value="HSP70_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00329">
        <property type="entry name" value="HSP70_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01036">
        <property type="entry name" value="HSP70_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword id="KW-0067">ATP-binding</keyword>
    <keyword id="KW-0143">Chaperone</keyword>
    <keyword id="KW-0547">Nucleotide-binding</keyword>
    <keyword id="KW-1185">Reference proteome</keyword>
    <feature type="chain" id="PRO_1000131671" description="Chaperone protein HscA homolog">
        <location>
            <begin position="1"/>
            <end position="622"/>
        </location>
    </feature>
    <evidence type="ECO:0000255" key="1">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00679"/>
        </source>
    </evidence>
    <sequence length="622" mass="65633" checksum="FAB5BA8138223E8A" modified="2008-01-15" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="68" xmlns="http://uniprot.org/uniprot">
    <accession>A9BX53</accession>
    <name>A9BX53_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Glutathione S-transferase domain</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ordered locus">Daci_5500</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="5" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the GST superfamily. HSP26 family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX38129.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012207298.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_5500"/>
    <dbReference type="PRIDE" id="A9BX53"/>
    <dbReference type="EnsemblBacteria" id="ABX38129">
        <property type="protein sequence ID" value="ABX38129"/>
        <property type="gene ID" value="Daci_5500"/>
    </dbReference>
    <dbReference type="GeneID" id="60689854"/>
    <dbReference type="KEGG" id="dac:Daci_5500"/>
    <dbReference type="eggNOG" id="COG0625">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_011226_9_3_4"/>
    <dbReference type="OMA" id="ADHYSHR"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016740">
        <property type="term" value="F:transferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006749">
        <property type="term" value="P:glutathione metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd03059">
        <property type="entry name" value="GST_N_SspA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010987">
        <property type="entry name" value="Glutathione-S-Trfase_C-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036282">
        <property type="entry name" value="Glutathione-S-Trfase_C_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR040079">
        <property type="entry name" value="Glutathione_S-Trfase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004045">
        <property type="entry name" value="Glutathione_S-Trfase_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004046">
        <property type="entry name" value="GST_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR034341">
        <property type="entry name" value="SspA_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036249">
        <property type="entry name" value="Thioredoxin-like_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00043">
        <property type="entry name" value="GST_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13417">
        <property type="entry name" value="GST_N_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SFLD" id="SFLDS00019">
        <property type="entry name" value="Glutathione_Transferase_(cytos"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47616">
        <property type="entry name" value="SSF47616"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52833">
        <property type="entry name" value="SSF52833"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50405">
        <property type="entry name" value="GST_CTER"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50404">
        <property type="entry name" value="GST_NTER"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="GST N-terminal" evidence="2">
        <location>
            <begin position="1"/>
            <end position="78"/>
        </location>
    </feature>
    <feature type="domain" description="GST C-terminal" evidence="3">
        <location>
            <begin position="83"/>
            <end position="203"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00009929"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS50404"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="PROSITE" id="PS50405"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="ABX38129.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="203" mass="23734" checksum="154AA396F2BA9D85" modified="2008-01-15" version="1">MMVLYSGTTCPFSHRCRFVLFEKGMDFEIRDVDLFSKPEDISVMNPYGQVPILVERDLILYESNIINEYIDERFPHPQLMPGDPVDRARVRLFLLNFEKELFVHVSTLEERNVKGNEKAIEKARAHIRDRLTQLAPVFLKNKYMLGENFSMLDVAIAPLLWRLDYYGIEVSKNAAPLLKYAERIFSRPAYIEALTPSEKVMRK</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="40" xmlns="http://uniprot.org/uniprot">
    <accession>A9BX66</accession>
    <name>A9BX66_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_5513</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX38142.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_5513"/>
    <dbReference type="PRIDE" id="A9BX66"/>
    <dbReference type="EnsemblBacteria" id="ABX38142">
        <property type="protein sequence ID" value="ABX38142"/>
        <property type="gene ID" value="Daci_5513"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_5513"/>
    <dbReference type="eggNOG" id="ENOG502ZHC7">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_879181_0_0_4"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036873">
        <property type="entry name" value="Rhodanese-like_dom_sf"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52821">
        <property type="entry name" value="SSF52821"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="1">
        <location>
            <begin position="1"/>
            <end position="29"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5002735181" evidence="1">
        <location>
            <begin position="30"/>
            <end position="316"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX38142.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="316" mass="33659" checksum="9367BD952FCE4F57" modified="2008-01-15" version="1">MRLRRFCGAGLAHAVAVCAAVLVAAPLRAQTDAEPQSCRADAHAVRDARAAESPVTWPRQVPPLALTPSCWMSPAEWRQRLVSPGAQAAMLVDVRPAQHRRATPIAQALQMDLPQLQGKRFLMQEEVILLGTGLDHADLDAACRQLRSQGFGRVKALLGGAAVALHPTASARLQDLSASDWIASLGQGLAWTVLSLSKALDAAPAVQSPVDEQQTHRLDATHDLAIQLNAIASRKARGDQPGVSASRALVFIADASTEPELRARLAAQRASLGERPDAVPVYWLLGGWQAYQAQVASMQAIGTTAGHRLQAACGRF</sequence>
</entry>
<entry dataset="Swiss-Prot" created="2009-04-14" modified="2022-08-03" version="71" xmlns="http://uniprot.org/uniprot">
    <accession>A9BXA1</accession>
    <name>HIS6_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Imidazole glycerol phosphate synthase subunit HisF</fullName>
            <ecNumber evidence="1">4.3.2.10</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="1">IGP synthase cyclase subunit</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="1">IGP synthase subunit HisF</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="1">ImGP synthase subunit HisF</fullName>
            <shortName evidence="1">IGPS subunit HisF</shortName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="1" type="primary">hisF</name>
        <name type="ordered locus">Daci_5548</name>
    </gene>
    <organism>
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference key="1">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain>DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="1">IGPS catalyzes the conversion of PRFAR and glutamine to IGP, AICAR and glutamate. The HisF subunit catalyzes the cyclization activity that produces IGP and AICAR from PRFAR using the ammonia provided by the HisH subunit.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>5-[(5-phospho-1-deoxy-D-ribulos-1-ylimino)methylamino]-1-(5-phospho-beta-D-ribosyl)imidazole-4-carboxamide + L-glutamine = 5-amino-1-(5-phospho-beta-D-ribosyl)imidazole-4-carboxamide + D-erythro-1-(imidazol-4-yl)glycerol 3-phosphate + H(+) + L-glutamate</text>
            <dbReference type="Rhea" id="RHEA:24793"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:29985"/>
            <dbReference type="ChEBI" id="CHEBI:58278"/>
            <dbReference type="ChEBI" id="CHEBI:58359"/>
            <dbReference type="ChEBI" id="CHEBI:58475"/>
            <dbReference type="ChEBI" id="CHEBI:58525"/>
            <dbReference type="EC" id="4.3.2.10"/>
        </reaction>
    </comment>
    <comment type="pathway">
        <text evidence="1">Amino-acid biosynthesis; L-histidine biosynthesis; L-histidine from 5-phospho-alpha-D-ribose 1-diphosphate: step 5/9.</text>
    </comment>
    <comment type="subunit">
        <text evidence="1">Heterodimer of HisH and HisF.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="1">Belongs to the HisA/HisF family.</text>
    </comment>
    <dbReference type="EC" id="4.3.2.10" evidence="1"/>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX38177.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012207346.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A9BXA1"/>
    <dbReference type="SMR" id="A9BXA1"/>
    <dbReference type="STRING" id="398578.Daci_5548"/>
    <dbReference type="PRIDE" id="A9BXA1"/>
    <dbReference type="EnsemblBacteria" id="ABX38177">
        <property type="protein sequence ID" value="ABX38177"/>
        <property type="gene ID" value="Daci_5548"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_5548"/>
    <dbReference type="eggNOG" id="COG0107">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_048577_4_0_4"/>
    <dbReference type="OMA" id="IFHYKET"/>
    <dbReference type="UniPathway" id="UPA00031">
        <property type="reaction ID" value="UER00010"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000107">
        <property type="term" value="F:imidazoleglycerol-phosphate synthase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016829">
        <property type="term" value="F:lyase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000105">
        <property type="term" value="P:histidine biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd04731">
        <property type="entry name" value="HisF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.20.20.70">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01013">
        <property type="entry name" value="HisF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013785">
        <property type="entry name" value="Aldolase_TIM"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006062">
        <property type="entry name" value="His_biosynth"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004651">
        <property type="entry name" value="HisF"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011060">
        <property type="entry name" value="RibuloseP-bd_barrel"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00977">
        <property type="entry name" value="His_biosynth"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51366">
        <property type="entry name" value="SSF51366"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00735">
        <property type="entry name" value="hisF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword id="KW-0028">Amino-acid biosynthesis</keyword>
    <keyword id="KW-0963">Cytoplasm</keyword>
    <keyword id="KW-0368">Histidine biosynthesis</keyword>
    <keyword id="KW-0456">Lyase</keyword>
    <keyword id="KW-1185">Reference proteome</keyword>
    <feature type="chain" id="PRO_1000134986" description="Imidazole glycerol phosphate synthase subunit HisF">
        <location>
            <begin position="1"/>
            <end position="266"/>
        </location>
    </feature>
    <feature type="active site" evidence="1">
        <location>
            <position position="11"/>
        </location>
    </feature>
    <feature type="active site" evidence="1">
        <location>
            <position position="130"/>
        </location>
    </feature>
    <evidence type="ECO:0000255" key="1">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01013"/>
        </source>
    </evidence>
    <sequence length="266" mass="27837" checksum="89D9654AAE06633F" modified="2008-01-15" version="1">MLAKRIIPCLDVTGGRVVKGVNFVELRDAGDPVEIAARYNAQGADELTFLDITATSDGRDLILPIIESVASQVFIPLTVGGGVRTVEDVRRLLNAGADKTSFNSAAIANPEVINAASDKYGAQCIVVAIDAKRRTAEDEQRMGADGRAAGPGWDVYSHGGRKNTGLDAVQWAAEMARRGAGEILLTSMDRDGTKSGFDLKLTRAVSDAVPVPVIASGGVGSLDDLADGVTLGGADAVLAASIFHYGEFTVGQAKQRMAERGVPVRL</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="90" xmlns="http://uniprot.org/uniprot">
    <accession>A9BXF3</accession>
    <name>A9BXF3_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="8">Probable GTP-binding protein EngB</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="8" type="primary">engB</name>
        <name evidence="11" type="ordered locus">Daci_5600</name>
    </gene>
    <organism evidence="11 12">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="11 12" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="12">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="12" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="12">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="8">Necessary for normal cell division and for the maintenance of normal septation.</text>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </cofactor>
    </comment>
    <comment type="similarity">
        <text evidence="2 8">Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. EngB GTPase family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX38229.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_5600"/>
    <dbReference type="PRIDE" id="A9BXF3"/>
    <dbReference type="EnsemblBacteria" id="ABX38229">
        <property type="protein sequence ID" value="ABX38229"/>
        <property type="gene ID" value="Daci_5600"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_5600"/>
    <dbReference type="eggNOG" id="COG0218">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_033732_1_1_4"/>
    <dbReference type="OMA" id="LMMDIRH"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005525">
        <property type="term" value="F:GTP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000917">
        <property type="term" value="P:division septum assembly"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd01876">
        <property type="entry name" value="YihA_EngB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00321">
        <property type="entry name" value="GTPase_EngB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR030393">
        <property type="entry name" value="G_ENGB_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006073">
        <property type="entry name" value="GTP-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019987">
        <property type="entry name" value="GTP-bd_ribosome_bio_YsxC"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01926">
        <property type="entry name" value="MMR_HSR1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR03598">
        <property type="entry name" value="GTPase_YsxC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51706">
        <property type="entry name" value="G_ENGB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="8" id="KW-0131">Cell cycle</keyword>
    <keyword evidence="8" id="KW-0132">Cell division</keyword>
    <keyword evidence="6 8" id="KW-0342">GTP-binding</keyword>
    <keyword evidence="5" id="KW-0460">Magnesium</keyword>
    <keyword evidence="3" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="4 8" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="12" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="7 8" id="KW-0717">Septation</keyword>
    <feature type="domain" description="EngB-type G" evidence="10">
        <location>
            <begin position="54"/>
            <end position="231"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="9">
        <location>
            <begin position="1"/>
            <end position="22"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="9">
        <location>
            <begin position="235"/>
            <end position="259"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001946"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00009638"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022842"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023134"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023210"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00321"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="10">
        <source>
            <dbReference type="PROSITE" id="PS51706"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="EMBL" id="ABX38229.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="259" mass="28059" checksum="ADCC986790ABDFF9" modified="2008-01-15" version="1">MRPRETDHTMNPAAPAADAAPTSSLIDPKLAMGWMHTTRFLTTAAQLHHLPKVDVPEIAFVGRSNAGKSTCINTLTQQKQLAFASKKPGRTQHINLFSLGKQGVTDAVLADLPGYGYAAVSRTDKQRWQRVMLNYLVSRESLTGIVLLCDPRLGLTELDEALLDALRPRVQEGLKFLVLLTKADKLTRAEQAKVLSITRLNAGGGEVRMFSALKKQGVDEVAQLLWHWSHPEGLAQPAAAAPQADVAAATPGESDSPQD</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="82" xmlns="http://uniprot.org/uniprot">
    <accession>A9BXM8</accession>
    <name>A9BXM8_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Transcriptional regulator, RpiR family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ordered locus">Daci_5676</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="6" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX38304.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_5676"/>
    <dbReference type="PRIDE" id="A9BXM8"/>
    <dbReference type="EnsemblBacteria" id="ABX38304">
        <property type="protein sequence ID" value="ABX38304"/>
        <property type="gene ID" value="Daci_5676"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_5676"/>
    <dbReference type="eggNOG" id="COG1737">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_055769_0_0_4"/>
    <dbReference type="OMA" id="VPFIHRS"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0097367">
        <property type="term" value="F:carbohydrate derivative binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003700">
        <property type="term" value="F:DNA-binding transcription factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016301">
        <property type="term" value="F:kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006096">
        <property type="term" value="P:glycolytic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd05013">
        <property type="entry name" value="SIS_RpiR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009057">
        <property type="entry name" value="Homeobox-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000281">
        <property type="entry name" value="HTH_RpiR"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035472">
        <property type="entry name" value="RpiR-like_SIS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001347">
        <property type="entry name" value="SIS_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR046348">
        <property type="entry name" value="SIS_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01418">
        <property type="entry name" value="HTH_6"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01380">
        <property type="entry name" value="SIS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46689">
        <property type="entry name" value="SSF46689"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53697">
        <property type="entry name" value="SSF53697"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51071">
        <property type="entry name" value="HTH_RPIR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51464">
        <property type="entry name" value="SIS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0324">Glycolysis</keyword>
    <keyword evidence="1" id="KW-0418">Kinase</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="HTH rpiR-type" evidence="3">
        <location>
            <begin position="41"/>
            <end position="117"/>
        </location>
    </feature>
    <feature type="domain" description="SIS" evidence="4">
        <location>
            <begin position="165"/>
            <end position="304"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022777"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023152"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="PROSITE" id="PS51071"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="PROSITE" id="PS51464"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="ABX38304.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="323" mass="35190" checksum="51B983E9534EC943" modified="2008-01-15" version="1">MRPHGLHWRQESKRRLPLMQNARWTCLAATASLYPQNNAHRLMLDRITASLPSLAPAEQRVARLVLADPRAFARQPVRELAERAHVSKPTVVRFCRSMGYDGLADFKLKLAGSVSEGVPFIHRSVDTDDKTSDVMVKVVDNAVAAFLQYRNAASTTAIEQAAQAIASTWQTGRRIEFYGAGNSGIVAQDAQHKFFRLGVTSLATSDGHMQVMSATLLGPGDCAVIISNSGRTRDLMDAADIARKNGATTIAITASGSPLASACHIHLAADHPEGYDRYSPMVSRLLHLLVIDVLATCVALRIGPALQPALEQMKNNLRAKRYT</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="56" xmlns="http://uniprot.org/uniprot">
    <accession>A9BXN3</accession>
    <name>A9BXN3_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="6">Porin, gram-negative type</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ordered locus">Daci_5681</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="7" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX38309.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_5681"/>
    <dbReference type="PRIDE" id="A9BXN3"/>
    <dbReference type="EnsemblBacteria" id="ABX38309">
        <property type="protein sequence ID" value="ABX38309"/>
        <property type="gene ID" value="Daci_5681"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_5681"/>
    <dbReference type="eggNOG" id="COG3203">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_1501155_0_0_4"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046930">
        <property type="term" value="C:pore complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015288">
        <property type="term" value="F:porin activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006811">
        <property type="term" value="P:ion transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd00342">
        <property type="entry name" value="gram_neg_porins"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.160.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR033900">
        <property type="entry name" value="Gram_neg_porin_domain"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023614">
        <property type="entry name" value="Porin_dom_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13609">
        <property type="entry name" value="Porin_4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0406">Ion transport</keyword>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-0626">Porin</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4" id="KW-0732">Signal</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1134">Transmembrane beta strand</keyword>
    <keyword evidence="3" id="KW-0813">Transport</keyword>
    <feature type="signal peptide" evidence="4">
        <location>
            <begin position="1"/>
            <end position="25"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5002735934" evidence="4">
        <location>
            <begin position="26"/>
            <end position="179"/>
        </location>
    </feature>
    <feature type="domain" description="Porin_4" evidence="5">
        <location>
            <begin position="11"/>
            <end position="179"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022452"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023065"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023114"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="Pfam" id="PF13609"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="ABX38309.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="179" mass="19171" checksum="9AF855813BAD84DB" modified="2008-01-15" version="1">MNSSFVKKSVALAVLAATAPLAAFAQQSSVQLYGIVDAAVRHTTNEGPTKSGKTQMIGGGMSQSRWGINITEDLGGGLAAIANLEARFLTDTGEQAAASYFQQSWVGIRSSSFGQVTLGRQYNMLFDLVTSTYASFPYSPYMEAYKPEIGMSMGARASNMVKYLAEFGPVRGALQYSFD</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="74" xmlns="http://uniprot.org/uniprot">
    <accession>A9BXN7</accession>
    <name>A9BXN7_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="11">L-threonine dehydratase</fullName>
            <ecNumber evidence="11">4.3.1.19</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="11">Threonine deaminase</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="11" type="primary">ilvA</name>
        <name evidence="13" type="ordered locus">Daci_5685</name>
    </gene>
    <organism evidence="13 14">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="13 14" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="14">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="14" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="14">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="10 11">Catalyzes the anaerobic formation of alpha-ketobutyrate and ammonia from threonine in a two-step reaction. The first step involved a dehydration of threonine and a production of enamine intermediates (aminocrotonate), which tautomerizes to its imine form (iminobutyrate). Both intermediates are unstable and short-lived. The second step is the nonenzymatic hydrolysis of the enamine/imine intermediates to form 2-ketobutyrate and free ammonia. In the low water environment of the cell, the second step is accelerated by RidA.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1 11">
            <text>L-threonine = 2-oxobutanoate + NH4(+)</text>
            <dbReference type="Rhea" id="RHEA:22108"/>
            <dbReference type="ChEBI" id="CHEBI:16763"/>
            <dbReference type="ChEBI" id="CHEBI:28938"/>
            <dbReference type="ChEBI" id="CHEBI:57926"/>
            <dbReference type="EC" id="4.3.1.19"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="2 11">
            <name>pyridoxal 5'-phosphate</name>
            <dbReference type="ChEBI" id="CHEBI:597326"/>
        </cofactor>
    </comment>
    <comment type="pathway">
        <text evidence="3 11">Amino-acid biosynthesis; L-isoleucine biosynthesis; 2-oxobutanoate from L-threonine: step 1/1.</text>
    </comment>
    <comment type="subunit">
        <text evidence="11">Homotetramer.</text>
    </comment>
    <comment type="similarity">
        <text evidence="4 11">Belongs to the serine/threonine dehydratase family.</text>
    </comment>
    <dbReference type="EC" id="4.3.1.19" evidence="11"/>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX38313.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012207482.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_5685"/>
    <dbReference type="PRIDE" id="A9BXN7"/>
    <dbReference type="EnsemblBacteria" id="ABX38313">
        <property type="protein sequence ID" value="ABX38313"/>
        <property type="gene ID" value="Daci_5685"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_5685"/>
    <dbReference type="eggNOG" id="COG1171">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_021152_6_2_4"/>
    <dbReference type="OMA" id="VNFPQRA"/>
    <dbReference type="UniPathway" id="UPA00047">
        <property type="reaction ID" value="UER00054"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004794">
        <property type="term" value="F:L-threonine ammonia-lyase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030170">
        <property type="term" value="F:pyridoxal phosphate binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009097">
        <property type="term" value="P:isoleucine biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.1020.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.1100">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045865">
        <property type="entry name" value="ACT-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001926">
        <property type="entry name" value="PLP-dep"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000634">
        <property type="entry name" value="Ser/Thr_deHydtase_PyrdxlP-BS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001721">
        <property type="entry name" value="TD_ACT-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038110">
        <property type="entry name" value="TD_ACT-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005787">
        <property type="entry name" value="Thr_deHydtase_biosynth"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036052">
        <property type="entry name" value="Trypto_synt_PLP_dependent"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00291">
        <property type="entry name" value="PALP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00585">
        <property type="entry name" value="Thr_dehydrat_C"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53686">
        <property type="entry name" value="SSF53686"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55021">
        <property type="entry name" value="SSF55021"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01124">
        <property type="entry name" value="ilvA_2Cterm"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51672">
        <property type="entry name" value="ACT_LIKE"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00165">
        <property type="entry name" value="DEHYDRATASE_SER_THR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="11" id="KW-0028">Amino-acid biosynthesis</keyword>
    <keyword evidence="9 11" id="KW-0100">Branched-chain amino acid biosynthesis</keyword>
    <keyword evidence="5 11" id="KW-0412">Isoleucine biosynthesis</keyword>
    <keyword evidence="8 11" id="KW-0456">Lyase</keyword>
    <keyword evidence="7 11" id="KW-0663">Pyridoxal phosphate</keyword>
    <keyword evidence="14" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="6" id="KW-0677">Repeat</keyword>
    <feature type="domain" description="ACT-like" evidence="12">
        <location>
            <begin position="338"/>
            <end position="414"/>
        </location>
    </feature>
    <feature type="domain" description="ACT-like" evidence="12">
        <location>
            <begin position="437"/>
            <end position="508"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001274"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00001933"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00004810"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00010869"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022624"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022737"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022898"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00023239"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00023304"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00025527"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="RuleBase" id="RU362012"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="12">
        <source>
            <dbReference type="PROSITE" id="PS51672"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="13">
        <source>
            <dbReference type="EMBL" id="ABX38313.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="14">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="517" mass="56637" checksum="24498E1BAFB99A2D" modified="2008-01-15" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="51" xmlns="http://uniprot.org/uniprot">
    <accession>A9BY01</accession>
    <name>A9BY01_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">DUF45 domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Daci_1292</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="4" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX33936.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012203222.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_1292"/>
    <dbReference type="PRIDE" id="A9BY01"/>
    <dbReference type="EnsemblBacteria" id="ABX33936">
        <property type="protein sequence ID" value="ABX33936"/>
        <property type="gene ID" value="Daci_1292"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_1292"/>
    <dbReference type="eggNOG" id="COG1451">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_065947_2_0_4"/>
    <dbReference type="OMA" id="RLNWRLM"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002725">
        <property type="entry name" value="YgjP-like_metallopeptidase"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01863">
        <property type="entry name" value="DUF45"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="DUF45" evidence="2">
        <location>
            <begin position="84"/>
            <end position="301"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="58"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Pro residues" evidence="1">
        <location>
            <begin position="31"/>
            <end position="50"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF01863"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ABX33936.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="308" mass="34333" checksum="7365DCFB3000CC55" modified="2008-01-15" version="1">MANPAQRSWDWLLPPAVQTQDGGLKPRRDRAAPPAQPPSAPPPSSAPSPSTIPEHSPRIHPEANQQAVLQGQVLHYRLQRSRRRTIGFTIGAQGLVVSAPAWVNMAAIAQALEAKSGWILRKLHEAGQRQQAQQAARIRWEHGAEIGYLGRPLQLCLTGGETQPLRTRQVHREQAADGSQSLHLPLAPGASAAEVRACVQAWMLREARSWFTASLQRHAPLLGVQWTSLRLTSARTRWGSANTAGAIRLNWRLMQHTPEVIDYVVVHELSHLRHMDHSPRFWATVASVMPGWEAQRQVLRDKLLPPWE</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="43" xmlns="http://uniprot.org/uniprot">
    <accession>A9BY24</accession>
    <name>A9BY24_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_1315</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX33959.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_1315"/>
    <dbReference type="PRIDE" id="A9BY24"/>
    <dbReference type="EnsemblBacteria" id="ABX33959">
        <property type="protein sequence ID" value="ABX33959"/>
        <property type="gene ID" value="Daci_1315"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_1315"/>
    <dbReference type="eggNOG" id="COG1560">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_965874_0_0_4"/>
    <dbReference type="OMA" id="PAAWHLW"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="15"/>
            <end position="37"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX33959.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="297" mass="34299" checksum="33382ED66937005E" modified="2008-01-15" version="1">MKAMVRRLWCEGRDLLELVLIPGLAAVLPWTFCFRIFRRLARWQWLYREACEADWRQAHAKGFAQDRLHWLWERKLVQLVDHADHYLHRTRSDAWMRRHLQVRGDWMEHGRPSFLFTFHWGAGMWGLRHARKAGLSVHALSAPAENASFHGRWVLMRYVKARLRSVEQALEQPLVFVPRGLRQVKDALARDEQILALLDVPQDGSGKGQVFGLLGEQVLLSIAIPEMAARQSQAYAVYATGLDVASGQRFLEIMCFGPGAGAQDMTLEMLAQLEALIWKSPAAWHLWGQWPRFCARQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="46" xmlns="http://uniprot.org/uniprot">
    <accession>A9BY56</accession>
    <name>A9BY56_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_1347</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX33991.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012203277.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_1347"/>
    <dbReference type="PRIDE" id="A9BY56"/>
    <dbReference type="EnsemblBacteria" id="ABX33991">
        <property type="protein sequence ID" value="ABX33991"/>
        <property type="gene ID" value="Daci_1347"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_1347"/>
    <dbReference type="eggNOG" id="COG1664">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_106651_0_0_4"/>
    <dbReference type="OMA" id="EIHGEFD"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007607">
        <property type="entry name" value="BacA/B"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR35024">
        <property type="entry name" value="PTHR35024"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04519">
        <property type="entry name" value="Bactofilin"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="70"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="14"/>
            <end position="67"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX33991.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="221" mass="21969" checksum="30B093499D8E7A51" modified="2008-01-15" version="1">MAVQNPFFGKRDNDAFTSRNTLGSGTGAASTGGSPSGAVMPSSSVSSPASTQRQASPVSQDSPGSKLTVGPNIKLKGVEITDCDTLVVEGTVEATMDSRVIQIAEQGAFHGTAEIDIAEIHGVFDGTLTVREKLVIYGTGKVSGKIRYGKVVIEEGGELTGQIEAGSSPRSSSGSAVASSASSLSSSSSAVSSDSAASSSAALAAATAAASLQPRVTPSLA</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="88" xmlns="http://uniprot.org/uniprot">
    <accession>A9BY58</accession>
    <name>A9BY58_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Two component transcriptional regulator, LuxR family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ordered locus">Daci_1553</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="6" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX34197.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012203483.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_1553"/>
    <dbReference type="PRIDE" id="A9BY58"/>
    <dbReference type="EnsemblBacteria" id="ABX34197">
        <property type="protein sequence ID" value="ABX34197"/>
        <property type="gene ID" value="Daci_1553"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_1553"/>
    <dbReference type="eggNOG" id="COG4566">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_000445_90_4_4"/>
    <dbReference type="OMA" id="VHRSQVM"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000160">
        <property type="term" value="P:phosphorelay signal transduction system"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006355">
        <property type="term" value="P:regulation of transcription, DNA-templated"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd06170">
        <property type="entry name" value="LuxR_C_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011006">
        <property type="entry name" value="CheY-like_superfamily"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016032">
        <property type="entry name" value="Sig_transdc_resp-reg_C-effctor"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001789">
        <property type="entry name" value="Sig_transdc_resp-reg_receiver"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000792">
        <property type="entry name" value="Tscrpt_reg_LuxR_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00196">
        <property type="entry name" value="GerE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00072">
        <property type="entry name" value="Response_reg"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00038">
        <property type="entry name" value="HTHLUXR"/>
    </dbReference>
    <dbReference type="SMART" id="SM00421">
        <property type="entry name" value="HTH_LUXR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00448">
        <property type="entry name" value="REC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46894">
        <property type="entry name" value="SSF46894"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52172">
        <property type="entry name" value="SSF52172"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50043">
        <property type="entry name" value="HTH_LUXR_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50110">
        <property type="entry name" value="RESPONSE_REGULATORY"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="2" id="KW-0597">Phosphoprotein</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Response regulatory" evidence="4">
        <location>
            <begin position="12"/>
            <end position="129"/>
        </location>
    </feature>
    <feature type="domain" description="HTH luxR-type" evidence="3">
        <location>
            <begin position="145"/>
            <end position="210"/>
        </location>
    </feature>
    <feature type="modified residue" description="4-aspartylphosphate" evidence="2">
        <location>
            <position position="64"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00169"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="PROSITE" id="PS50043"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="PROSITE" id="PS50110"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="ABX34197.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="212" mass="23378" checksum="FDB6264745FB82B4" modified="2008-01-15" version="1">MVEPSTAEAEALVYIVDDDASVRAAIEDLLASVGLCVRAFGATREFLDHWQRQPPAGPACLVLDIRMPGQSGMDFRRQMLEMGLKLPTIFITGHGDIPMSVEAMKTGAIEFLTKPFRDQDLLDAIQQGIALDRQRRALEAGEQALRACWQSLSPGEQDVVVGVVRGLLNKQIAADLGVSEITVKVRRGQAMRKMQVRTLADLVRALERLDIR</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="41" xmlns="http://uniprot.org/uniprot">
    <accession>A9BYE1</accession>
    <name>A9BYE1_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Phage head-tail adaptor</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Daci_1637</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="2" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX34280.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_1637"/>
    <dbReference type="PRIDE" id="A9BYE1"/>
    <dbReference type="EnsemblBacteria" id="ABX34280">
        <property type="protein sequence ID" value="ABX34280"/>
        <property type="gene ID" value="Daci_1637"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_1637"/>
    <dbReference type="eggNOG" id="COG5614">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_2259149_0_0_4"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.10.270">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008767">
        <property type="entry name" value="Phage_SPP1_head-tail_adaptor"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038666">
        <property type="entry name" value="SSP1_head-tail_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF05521">
        <property type="entry name" value="Phage_H_T_join"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01563">
        <property type="entry name" value="gp16_SPP1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ABX34280.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="103" mass="11205" checksum="18FAB62ABD874946" modified="2008-01-15" version="1">MVAERPTQTADGAGGVVETWAVVAEFWAEVTPTTGREQMRAGQRLADLDKRVVTRWAPGAEGLTALDRLVIGGVPHPITRPPVDLKSRHRELEIYCNEGLSDG</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="52" xmlns="http://uniprot.org/uniprot">
    <accession>A9BYT6</accession>
    <name>A9BYT6_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Daci_2191</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="4" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Periplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the UPF0065 (bug) family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX34831.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_2191"/>
    <dbReference type="PRIDE" id="A9BYT6"/>
    <dbReference type="EnsemblBacteria" id="ABX34831">
        <property type="protein sequence ID" value="ABX34831"/>
        <property type="gene ID" value="Daci_2191"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_2191"/>
    <dbReference type="eggNOG" id="COG3181">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_045683_0_0_4"/>
    <dbReference type="OMA" id="VHIPYNG"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0042597">
        <property type="term" value="C:periplasmic space"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.190.150">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005064">
        <property type="entry name" value="BUG"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR042100">
        <property type="entry name" value="Bug_dom1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR42928">
        <property type="entry name" value="PTHR42928"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03401">
        <property type="entry name" value="TctC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF017082">
        <property type="entry name" value="YflP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004418"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00006987"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ABX34831.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="312" mass="32283" checksum="C02F648B19566177" modified="2008-01-15" version="1">MAAAAALASPLALAQEPIRLIVPYAPGGPLDITSRALAERVRDSLGVVIIDNKAGAGGNIGADAIARATPDGMTIGLAATATHAVNPWLYAKMPYDAGKDFAGITQMVRVPNVLVMNAARAEQLKIHSVADLIAYAKANPGKLNYGSGGNGSAGHLAGEMLKQKAGIFALHVPYRGANPAQLALLSGEVDFNIDNLAAAAPNIRSGKLKALAVTTLNPTTLLPGVPALSKTFPGFSIDTWWGLVAPAGTPKPVLDKLSKAFGDALAAPETKTRFETLMAEPVSSTPAEFDRFMAAERAKYQPIVKASGAKVD</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="55" xmlns="http://uniprot.org/uniprot">
    <accession>A9BYZ9</accession>
    <name>A9BYZ9_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Daci_2254</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
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        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="4" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX34894.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012204177.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_2254"/>
    <dbReference type="PRIDE" id="A9BYZ9"/>
    <dbReference type="EnsemblBacteria" id="ABX34894">
        <property type="protein sequence ID" value="ABX34894"/>
        <property type="gene ID" value="Daci_2254"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_2254"/>
    <dbReference type="eggNOG" id="COG1975">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_041115_2_0_4"/>
    <dbReference type="OMA" id="EDDLSWG"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003777">
        <property type="entry name" value="XdhC_CoxI"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027051">
        <property type="entry name" value="XdhC_Rossmann_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13478">
        <property type="entry name" value="XdhC_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02625">
        <property type="entry name" value="XdhC_CoxI"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="XdhC_CoxI" evidence="1">
        <location>
            <begin position="15"/>
            <end position="87"/>
        </location>
    </feature>
    <feature type="domain" description="XdhC_C" evidence="2">
        <location>
            <begin position="169"/>
            <end position="311"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF02625"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF13478"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ABX34894.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="356" mass="38104" checksum="F06420296C446D6D" modified="2008-01-15" version="1">MENLDVHVLRHLAQWRAQGERALLATVVRTWGSSPRPIGSIMALGASGAVVGSVSGGCIEDDLIARYSHASDADALSDGAPRLLRYGVSADEAHRFGLPCGGTLELLLEFNPDAAALQQLVQWLDEGRMVRRTVDKATGQVVQQVSDAPEPLVHDGQQVANSFGPEYRMLLIGAGQLSEYLATMALFNGFAVTVCDPREEYSRHWSVAGVQLSREMPDDLVRTMRADARTCIIGLTHDPKLDDLALMEALESPAFYVGAIGSRRNTALRLQRLSEHFGLGDAQLARLRGPIGLYIGSKTPPEIAVSIMAEVLAAKNGVALPRGMTVEEGKLAAAQPPQPLEDDGPEGITPLVCGVG</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="57" xmlns="http://uniprot.org/uniprot">
    <accession>A9BZ02</accession>
    <name>A9BZ02_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Acriflavin resistance protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_2257</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX34897.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012204180.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_2257"/>
    <dbReference type="PRIDE" id="A9BZ02"/>
    <dbReference type="EnsemblBacteria" id="ABX34897">
        <property type="protein sequence ID" value="ABX34897"/>
        <property type="gene ID" value="Daci_2257"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_2257"/>
    <dbReference type="eggNOG" id="COG0841">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_002755_1_2_4"/>
    <dbReference type="OMA" id="FIIPCFY"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="GO" id="GO:0022857">
        <property type="term" value="F:transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.2090.10">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027463">
        <property type="entry name" value="AcrB_DN_DC_subdom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001036">
        <property type="entry name" value="Acrflvin-R"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR32063">
        <property type="entry name" value="PTHR32063"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00873">
        <property type="entry name" value="ACR_tran"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00702">
        <property type="entry name" value="ACRIFLAVINRP"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF82714">
        <property type="entry name" value="SSF82714"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="12"/>
            <end position="32"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="339"/>
            <end position="358"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="365"/>
            <end position="386"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="436"/>
            <end position="456"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="468"/>
            <end position="491"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="537"/>
            <end position="557"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="870"/>
            <end position="888"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="921"/>
            <end position="946"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="966"/>
            <end position="987"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="999"/>
            <end position="1025"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX34897.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="1043" mass="111192" checksum="D02446932A3B170B" modified="2008-01-15" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="52" xmlns="http://uniprot.org/uniprot">
    <accession>A9BZ15</accession>
    <name>A9BZ15_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Phosphoesterase, DHHA1</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Daci_2477</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="2" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX35115.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_2477"/>
    <dbReference type="PRIDE" id="A9BZ15"/>
    <dbReference type="EnsemblBacteria" id="ABX35115">
        <property type="protein sequence ID" value="ABX35115"/>
        <property type="gene ID" value="Daci_2477"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_2477"/>
    <dbReference type="eggNOG" id="COG2404">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_054374_1_0_4"/>
    <dbReference type="OMA" id="GLMVNAP"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038763">
        <property type="entry name" value="DHH_sf"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF64182">
        <property type="entry name" value="SSF64182"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ABX35115.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="340" mass="37232" checksum="EE3D26B8319B7258" modified="2008-01-15" version="1">MAPGPTIAPIMKNTILPLQLFVRPEHDDPQPLILYHGRRCPDGYGAALAAWLYYGGQAEFRGLDHGEIQKADDLGELAGRAVYVLDFAFEPELMAEIESRVSKLVVLDHHKSAAEKLSGYQCRCGVVHFDMNKSGARLAWEFFQADKPVPGLIRFIEDRDIWKWEFAESAGFLAALDMEPRSFERWAEIAAFTPEQEAAFMARGGAMDEKFQKLCADISEAAQPLVFNGMQGLMVNCPGMFHSQVGDLLARQSGSFALMWHASTKGVKIGLRSRSEFNCIPLAESFGGGGHAQACGFKMGNERLVELLSGVLKADASADYAYVAAPLMEQPEPGAPAEAV</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="78" xmlns="http://uniprot.org/uniprot">
    <accession>A9BZ91</accession>
    <name>A9BZ91_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="8">ABC transporter related</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="8" type="ordered locus">Daci_2553</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="9" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX35191.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012204470.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_2553"/>
    <dbReference type="EnsemblBacteria" id="ABX35191">
        <property type="protein sequence ID" value="ABX35191"/>
        <property type="gene ID" value="Daci_2553"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_2553"/>
    <dbReference type="eggNOG" id="COG0410">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_000604_1_2_4"/>
    <dbReference type="OMA" id="TIMGLWQ"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003593">
        <property type="entry name" value="AAA+_ATPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003439">
        <property type="entry name" value="ABC_transporter-like_ATP-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017871">
        <property type="entry name" value="ABC_transporter-like_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00005">
        <property type="entry name" value="ABC_tran"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00382">
        <property type="entry name" value="AAA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00211">
        <property type="entry name" value="ABC_TRANSPORTER_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50893">
        <property type="entry name" value="ABC_TRANSPORTER_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3 6" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="1" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="5" id="KW-0472">Membrane</keyword>
    <keyword evidence="2 6" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4" id="KW-1278">Translocase</keyword>
    <feature type="domain" description="ABC transporter" evidence="7">
        <location>
            <begin position="14"/>
            <end position="247"/>
        </location>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <begin position="46"/>
            <end position="53"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022967"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00434"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="PROSITE" id="PS50893"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="ABX35191.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="249" mass="26434" checksum="17F5267C64143DCB" modified="2008-01-15" version="1">MSAAANLNPNSNLLELSGVHTHIGAYHILHGVDLAVPRGQLTMLLGRNGAGKTTTLRTIMGLWRASQGRIAFGGADITALPTPAIARLNIAYVPENMGIFADLTVQENLLLAARGASRADRMDAQRLQWIFGMFPAVEKFWNHPAGKLSGGQKQMVAVARAIVEPRDLLIVDEPSKGLAPAIIENMIAAFAQLKAGGTTIVLVEQNLGFARRLGDRVAVMDNGRVVHAGGMAEFSADAALQQSLLGLSL</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="59" xmlns="http://uniprot.org/uniprot">
    <accession>A9BZ99</accession>
    <name>A9BZ99_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Rhodanese domain protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Daci_2561</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="4" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX35199.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012204478.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_2561"/>
    <dbReference type="PRIDE" id="A9BZ99"/>
    <dbReference type="EnsemblBacteria" id="ABX35199">
        <property type="protein sequence ID" value="ABX35199"/>
        <property type="gene ID" value="Daci_2561"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_2561"/>
    <dbReference type="eggNOG" id="COG2897">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_031618_1_2_4"/>
    <dbReference type="OMA" id="EGSLTEW"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.250.10">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001763">
        <property type="entry name" value="Rhodanese-like_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036873">
        <property type="entry name" value="Rhodanese-like_dom_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00581">
        <property type="entry name" value="Rhodanese"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SMART" id="SM00450">
        <property type="entry name" value="RHOD"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52821">
        <property type="entry name" value="SSF52821"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50206">
        <property type="entry name" value="RHODANESE_3"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="1">
        <location>
            <begin position="1"/>
            <end position="30"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5002732677" evidence="1">
        <location>
            <begin position="31"/>
            <end position="324"/>
        </location>
    </feature>
    <feature type="domain" description="Rhodanese" evidence="2">
        <location>
            <begin position="45"/>
            <end position="156"/>
        </location>
    </feature>
    <feature type="domain" description="Rhodanese" evidence="2">
        <location>
            <begin position="186"/>
            <end position="300"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS50206"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ABX35199.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="324" mass="34674" checksum="1B88CD4C13781801" modified="2008-01-15" version="1">MTKTFSPALRLAAPLLALGLACTAFGTAHAAEPLLTPAGVQAAAGQDAVRIIDIRDPKAYGERHIPGALNAPYGKWRGPATNPGELPELPKLTELVQSLGLTPATHAIVVSTGADATDFGAAARVYWTLKLLGLKELSVLNGGMKAWNEQKLPQDNEAVKVARSSYQPQLDTSLIATREDVGQHVRLSNAALVDSRPDAFYQGKTRAPAAKISGTLPGAQQLDFNQWFVPGTSTFVDTATAKQIAAKVKREQGQDMVAFCNTGHWAATDWFGLSEVAGLPGVKLYAGSMVDWTQQADAPPMANQPGRAESLAYDAKQWWEKKFK</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="85" xmlns="http://uniprot.org/uniprot">
    <accession>A9BZJ8</accession>
    <name>A9BZJ8_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Transcriptional regulator, LysR family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Daci_2960</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="4" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the LysR transcriptional regulatory family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX35598.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_2960"/>
    <dbReference type="PRIDE" id="A9BZJ8"/>
    <dbReference type="EnsemblBacteria" id="ABX35598">
        <property type="protein sequence ID" value="ABX35598"/>
        <property type="gene ID" value="Daci_2960"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_2960"/>
    <dbReference type="eggNOG" id="COG0583">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_039613_37_2_4"/>
    <dbReference type="OMA" id="PGSWESW"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003700">
        <property type="term" value="F:DNA-binding transcription factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005119">
        <property type="entry name" value="LysR_subst-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000847">
        <property type="entry name" value="Tscrpt_reg_HTH_LysR"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036390">
        <property type="entry name" value="WH_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00126">
        <property type="entry name" value="HTH_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03466">
        <property type="entry name" value="LysR_substrate"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46785">
        <property type="entry name" value="SSF46785"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50931">
        <property type="entry name" value="HTH_LYSR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HTH lysR-type" evidence="2">
        <location>
            <begin position="10"/>
            <end position="67"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00009437"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS50931"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ABX35598.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="327" mass="35134" checksum="BC962287463A104F" modified="2008-01-15" version="1">MTPPMTRRLPPLAALRAFEAAARLGRMTAAADELCVSPGAVSRQVRQLEQHLGLALFAGTKARPTLTAAARTLQPALTQAFEQIHEAVRSLGDAHEGPLDVACFSTFTVKWLIPRLFDFHAHHPGIEVRLRTTDTGTDAAREGCDLLITAIPTDSSGNSGQAIADDELALPLFDEYLGPVMSPAMAGPVTRPQDLASLPLLHTRGRRNAWDLWADSMGMAPPAAAGPVYEHYYFTLEAALRGLGAAVAPWHLVMDDVQAGRLLAPFGFTASGYRYLALRRSTAAPARLDTLCTWLQAQVRAMPQVPAVQGMPITPAGNFAATPKNRC</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="60" xmlns="http://uniprot.org/uniprot">
    <accession>A9BZU9</accession>
    <name>A9BZU9_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="3">RND efflux system, outer membrane lipoprotein, NodT family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Daci_3369</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="4" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="2">Cell membrane</location>
            <topology evidence="2">Lipid-anchor</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="1 2">Belongs to the outer membrane factor (OMF) (TC 1.B.17) family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX36007.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012205207.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_3369"/>
    <dbReference type="PRIDE" id="A9BZU9"/>
    <dbReference type="EnsemblBacteria" id="ABX36007">
        <property type="protein sequence ID" value="ABX36007"/>
        <property type="gene ID" value="Daci_3369"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_3369"/>
    <dbReference type="eggNOG" id="COG1538">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_012817_13_3_4"/>
    <dbReference type="OMA" id="AANQDYY"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015562">
        <property type="term" value="F:efflux transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003423">
        <property type="entry name" value="OMP_efflux"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010131">
        <property type="entry name" value="RND_efflux_OM_lipoprot_NodT"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02321">
        <property type="entry name" value="OEP"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01845">
        <property type="entry name" value="outer_NodT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2 3" id="KW-0449">Lipoprotein</keyword>
    <keyword evidence="2" id="KW-0472">Membrane</keyword>
    <keyword evidence="2" id="KW-0564">Palmitate</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0732">Signal</keyword>
    <keyword evidence="2" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="2" id="KW-1134">Transmembrane beta strand</keyword>
    <feature type="signal peptide" evidence="2">
        <location>
            <begin position="1"/>
            <end position="26"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5001436696" evidence="2">
        <location>
            <begin position="27"/>
            <end position="489"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00007613"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="RuleBase" id="RU362097"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ABX36007.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="489" mass="51944" checksum="D2B20BEBB26B6D45" modified="2008-01-15" version="1">MRRPTNVSALAAAAALAALLTGCNLAPQHRTPDMPVPDTVGSTAAMPAQADEASLQAAAALGWVQSQQLREVIALALANNRDLRVAVESIERARAQYGITRADLLPSVNAQAQASRARTAAGMTSATQAASVSTQYTAQLGFASYEIDLWGRVRNLSEAALQQFLQSEQNRRNVQIGLVADVANGWLTLAADQARLQLARETLASREKAYELTRRMHEIGSTSGLVLAQNQTTVDTARGDVASFTSQVERDRNALQLLVGGPLPDALLPGAATLRADARPAAALQPVPAPLPSSVLLVRPDIQAAENNLRAMEANIGAARAAMFPTISLTASVGSGSRELDGLFGGSSSTWSFIPLVRLPIFDGGRNRAGVQVAEANQRIAIAQYEKAVQTAFRETADVLADRAQWDERLAAQTSMVAATQKAFDLSEARFKAGVDNYLTVLDAQRSLYTAQQTLIGLRLSEQLNRVTLWKVLGGEQVQASSASAPANS</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="31" xmlns="http://uniprot.org/uniprot">
    <accession>A9C005</accession>
    <name>A9C005_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_3635</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX36267.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_3635"/>
    <dbReference type="PRIDE" id="A9C005"/>
    <dbReference type="EnsemblBacteria" id="ABX36267">
        <property type="protein sequence ID" value="ABX36267"/>
        <property type="gene ID" value="Daci_3635"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_3635"/>
    <dbReference type="HOGENOM" id="CLU_2342135_0_0_4"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="73"/>
            <end position="97"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="83"/>
            <end position="97"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX36267.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="97" mass="10589" checksum="3CBA08DF07B911E3" modified="2008-01-15" version="1">MQWMIFASVMPLAWKAEPDARIAEMMETEKAGALKEVRAQVQERQLTEQNVFPASGSKAKSFVATPRFRALPPRRVLPGSAAASRRTGSTARTAGNS</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="69" xmlns="http://uniprot.org/uniprot">
    <accession>A9C018</accession>
    <name>A9C018_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">Ferric uptake regulation protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="4" type="ordered locus">Daci_3648</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="5" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the Fur family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX36280.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012205476.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_3648"/>
    <dbReference type="PRIDE" id="A9C018"/>
    <dbReference type="EnsemblBacteria" id="ABX36280">
        <property type="protein sequence ID" value="ABX36280"/>
        <property type="gene ID" value="Daci_3648"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_3648"/>
    <dbReference type="eggNOG" id="COG0735">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_096072_2_2_4"/>
    <dbReference type="OMA" id="KENHKHQ"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003700">
        <property type="term" value="F:DNA-binding transcription factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.1490.190">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002481">
        <property type="entry name" value="FUR"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043135">
        <property type="entry name" value="Fur_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036390">
        <property type="entry name" value="WH_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33202">
        <property type="entry name" value="PTHR33202"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01475">
        <property type="entry name" value="FUR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46785">
        <property type="entry name" value="SSF46785"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0862">Zinc</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00007957"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00020910"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022833"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="ABX36280.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="133" mass="14354" checksum="E801877AC70DC768" modified="2008-01-15" version="1">MSHSLTTKQQRVLDTLRQAGAPLTAYALLDQLRDHGLTAPTQVYRALDKLAEQGVVHRLESLNAYVCCSHPDEGSHDFSAFAICDSCGQVDEFVDDALNRCLGSWAHGNAFALAHSNIELHGKCSACCTALPA</sequence>
</entry>
<entry dataset="Swiss-Prot" created="2009-05-05" modified="2022-08-03" version="74" xmlns="http://uniprot.org/uniprot">
    <accession>A9C020</accession>
    <name>GCH4_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">GTP cyclohydrolase FolE2</fullName>
            <ecNumber evidence="1">3.5.4.16</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="1" type="primary">folE2</name>
        <name type="ordered locus">Daci_3650</name>
    </gene>
    <organism>
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference key="1">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain>DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="1">Converts GTP to 7,8-dihydroneopterin triphosphate.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>GTP + H2O = 7,8-dihydroneopterin 3'-triphosphate + formate + H(+)</text>
            <dbReference type="Rhea" id="RHEA:17473"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:15740"/>
            <dbReference type="ChEBI" id="CHEBI:37565"/>
            <dbReference type="ChEBI" id="CHEBI:58462"/>
            <dbReference type="EC" id="3.5.4.16"/>
        </reaction>
    </comment>
    <comment type="pathway">
        <text evidence="1">Cofactor biosynthesis; 7,8-dihydroneopterin triphosphate biosynthesis; 7,8-dihydroneopterin triphosphate from GTP: step 1/1.</text>
    </comment>
    <comment type="similarity">
        <text evidence="1">Belongs to the GTP cyclohydrolase IV family.</text>
    </comment>
    <dbReference type="EC" id="3.5.4.16" evidence="1"/>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX36282.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012205478.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A9C020"/>
    <dbReference type="SMR" id="A9C020"/>
    <dbReference type="STRING" id="398578.Daci_3650"/>
    <dbReference type="PRIDE" id="A9C020"/>
    <dbReference type="EnsemblBacteria" id="ABX36282">
        <property type="protein sequence ID" value="ABX36282"/>
        <property type="gene ID" value="Daci_3650"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_3650"/>
    <dbReference type="eggNOG" id="COG1469">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_062816_0_0_4"/>
    <dbReference type="OMA" id="AKGIHMS"/>
    <dbReference type="UniPathway" id="UPA00848">
        <property type="reaction ID" value="UER00151"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003934">
        <property type="term" value="F:GTP cyclohydrolase I activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0035998">
        <property type="term" value="P:7,8-dihydroneopterin 3'-triphosphate biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniPathway"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01527_B">
        <property type="entry name" value="GTP_cyclohydrol_B"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR022838">
        <property type="entry name" value="GTP_cyclohydrolase_FolE2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003801">
        <property type="entry name" value="GTP_cyclohydrolase_FolE2/MptA"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR36445">
        <property type="entry name" value="PTHR36445"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02649">
        <property type="entry name" value="GCHY-1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword id="KW-0378">Hydrolase</keyword>
    <keyword id="KW-1185">Reference proteome</keyword>
    <feature type="chain" id="PRO_0000372026" description="GTP cyclohydrolase FolE2">
        <location>
            <begin position="1"/>
            <end position="296"/>
        </location>
    </feature>
    <feature type="site" description="May be catalytically important" evidence="1">
        <location>
            <position position="156"/>
        </location>
    </feature>
    <evidence type="ECO:0000255" key="1">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01527"/>
        </source>
    </evidence>
    <sequence length="296" mass="32306" checksum="978F17C3BFB5352F" modified="2008-01-15" version="1">MLAPLPDVSLTDPAPSLSPLQWVGMQGIDLPVTVAEPGYWRELHARADVQVDLPAAHVKGIHMSRLYRQLDSLAEESALSALALRHALQAMIDSHLDCQSRSARMRLSLDLLAQRPALVTHDLSGWKSYPVRLDATLAQGVFQLRLQVGVGYSSTCPCSAALSRQLLEQGFLQAFAGEPLVEPDQVASWLRRHGTLATAHSQRSEAQVSVDLACDAPDLGILPLIARVEQALGTPVQTAVKRADEQAFAALNGRNLMFVEDAARRIQAALEGIYARPRVHVRHMESLHPHDAVAWA</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="47" xmlns="http://uniprot.org/uniprot">
    <accession>A9C0F2</accession>
    <name>A9C0F2_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Tail protein 3</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Daci_4087</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="2" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX36718.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012205910.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_4087"/>
    <dbReference type="PRIDE" id="A9C0F2"/>
    <dbReference type="EnsemblBacteria" id="ABX36718">
        <property type="protein sequence ID" value="ABX36718"/>
        <property type="gene ID" value="Daci_4087"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_4087"/>
    <dbReference type="eggNOG" id="COG5492">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_077899_0_1_4"/>
    <dbReference type="OMA" id="INGTQFR"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014918">
        <property type="entry name" value="Phage_tail_3"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08813">
        <property type="entry name" value="Phage_tail_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ABX36718.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="217" mass="23114" checksum="60146EDAD09381EF" modified="2008-01-15" version="1">MASVPLPNGAQVALATTLAAAITISDISNANPAVATATGHTLVAGDIILLNNGWPRTDNSVRRVASPTTDEFAIEGLNSTNLDRFPDGGAGTARAITAWTQLPKIPTFELTGGDPKNGTTSYIDYEKDYDYFTGTNPERLNFTISYQPGTAAYDALVAANDSGVLQVIRLVLKDGSTLFYPGQLFFNKAPVTVKDQEMVNNVSLALQGEITRYAKLP</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="56" xmlns="http://uniprot.org/uniprot">
    <accession>A9C0H0</accession>
    <name>A9C0H0_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Pentapeptide repeat protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Daci_4412</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="2" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX37043.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012206215.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_4412"/>
    <dbReference type="PRIDE" id="A9C0H0"/>
    <dbReference type="EnsemblBacteria" id="ABX37043">
        <property type="protein sequence ID" value="ABX37043"/>
        <property type="gene ID" value="Daci_4412"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_4412"/>
    <dbReference type="eggNOG" id="COG1357">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_033401_5_4_4"/>
    <dbReference type="OMA" id="ADFFDCK"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001646">
        <property type="entry name" value="5peptide_repeat"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13599">
        <property type="entry name" value="Pentapeptide_4"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ABX37043.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="233" mass="25531" checksum="3C9BDFF6F56A192A" modified="2008-01-15" version="1">MHTTPSTKTIVNQIIDQDSLSELLKQEASHGLVFEQCEFDGLNLHQLDLQGAQFVECSFADTCFESCQLAGTRWLHCKAGRADFRLANLTDALFCQSDLNNTNWELAKLASARFLEVKLTGARFGGAQTLGIDFHESLLIGADLRGVSFRKKTLEGLNFSDADLAGCDFRDAVFHKASLRDAHLKNARFDGADLRSADLRGLTIASLSQHFKGSLISHEQAAELVGGLGVRVM</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="49" xmlns="http://uniprot.org/uniprot">
    <accession>A9C0L7</accession>
    <name>A9C0L7_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="7">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ordered locus">Daci_4460</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="8" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX37090.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012206262.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_4460"/>
    <dbReference type="PRIDE" id="A9C0L7"/>
    <dbReference type="EnsemblBacteria" id="ABX37090">
        <property type="protein sequence ID" value="ABX37090"/>
        <property type="gene ID" value="Daci_4460"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_4460"/>
    <dbReference type="eggNOG" id="COG1277">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_045816_0_0_4"/>
    <dbReference type="OMA" id="PHRMVHY"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0140359">
        <property type="term" value="F:ABC-type transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR032688">
        <property type="entry name" value="ABC2_membrane_2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR021913">
        <property type="entry name" value="DUF3526"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12679">
        <property type="entry name" value="ABC2_membrane_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12040">
        <property type="entry name" value="DUF3526"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="5 6" id="KW-0472">Membrane</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 6" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="4 6" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="20"/>
            <end position="40"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="131"/>
            <end position="150"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="177"/>
            <end position="200"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="206"/>
            <end position="233"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="240"/>
            <end position="259"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="448"/>
            <end position="466"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="ABX37090.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="475" mass="52474" checksum="8431B1C503AB297E" modified="2008-01-15" version="1">MSAAWTIAREEWRLLLRDRVAVLGMALWLLLSAAAAFTAWDQRSAAQAQRERHQSQVDSEFEAQPDRHPHRMVHYGHFVFRPLNPLAAFDAGIDAYTGHTLFLEGHRQNSANFGDVRQSSLLLRFGQLTPAFVLQVLAPLLLIFMGHACIAREREAGTLRVLLAQGVGTRQFLAGKLLALAGVAALVLLPALLALAWMAVATPVPISLVTTLAAGHVLWLMLWAVGIVAVSAFMRRGRDALLALLAAWAVAVVLLPRLVPELVGSALALPTRFETDIATARELAALGDSHNPDDPYFAAFRARVLAQYGVSRVEDLPVNYKGLVGMEGERLTSELFRRHAEASFDLQAEQLRRADAFALISPVIALRRLSMAVAGTDLQGYRRFLEQAEQHRYRMVQALNRLQVDKLSYAGDRSSRDNRIGHEHWRGVSDFHHEPDPPLVALRRAAPAAYVLLAWLAVLTVALLLATQRLGRVAR</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="74" xmlns="http://uniprot.org/uniprot">
    <accession>A9C0R7</accession>
    <name>A9C0R7_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="10">TonB-dependent receptor</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="10" type="ordered locus">Daci_5752</name>
    </gene>
    <organism evidence="10 11">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="10 11" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="11">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="11" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="11">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="6">Cell outer membrane</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="1 6">Belongs to the TonB-dependent receptor family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX38380.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012207549.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_5752"/>
    <dbReference type="PRIDE" id="A9C0R7"/>
    <dbReference type="EnsemblBacteria" id="ABX38380">
        <property type="protein sequence ID" value="ABX38380"/>
        <property type="gene ID" value="Daci_5752"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_5752"/>
    <dbReference type="eggNOG" id="COG4771">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_008287_18_0_4"/>
    <dbReference type="OMA" id="NIIMKTG"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009279">
        <property type="term" value="C:cell outer membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.170.130.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.170.20">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR039426">
        <property type="entry name" value="BtuB-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012910">
        <property type="entry name" value="Plug_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037066">
        <property type="entry name" value="Plug_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000531">
        <property type="entry name" value="TonB-dep_rcpt_b-brl"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036942">
        <property type="entry name" value="TonB_rcpt_b-brl_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30069">
        <property type="entry name" value="PTHR30069"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07715">
        <property type="entry name" value="Plug"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00593">
        <property type="entry name" value="TonB_dep_Rec"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-0998">Cell outer membrane</keyword>
    <keyword evidence="3 6" id="KW-0472">Membrane</keyword>
    <keyword evidence="4 10" id="KW-0675">Receptor</keyword>
    <keyword evidence="11" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="7" id="KW-0732">Signal</keyword>
    <keyword evidence="2 6" id="KW-0798">TonB box</keyword>
    <feature type="signal peptide" evidence="7">
        <location>
            <begin position="1"/>
            <end position="28"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5002735279" evidence="7">
        <location>
            <begin position="29"/>
            <end position="746"/>
        </location>
    </feature>
    <feature type="domain" description="Plug" evidence="9">
        <location>
            <begin position="74"/>
            <end position="179"/>
        </location>
    </feature>
    <feature type="domain" description="TonB_dep_Rec" evidence="8">
        <location>
            <begin position="234"/>
            <end position="743"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00009810"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023077"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023170"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023237"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="RuleBase" id="RU003357"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="Pfam" id="PF00593"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="9">
        <source>
            <dbReference type="Pfam" id="PF07715"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="EMBL" id="ABX38380.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="746" mass="80841" checksum="129E36586498C819" modified="2008-01-15" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="102" xmlns="http://uniprot.org/uniprot">
    <accession>A9C188</accession>
    <name>A9C188_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="12">Potassium-transporting ATPase ATP-binding subunit</fullName>
            <ecNumber evidence="12">7.2.2.6</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="12">ATP phosphohydrolase [potassium-transporting] B chain</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="12">Potassium-binding and translocating subunit B</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="12">Potassium-translocating ATPase B chain</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="12" type="primary">kdpB</name>
        <name evidence="13" type="ordered locus">Daci_5923</name>
    </gene>
    <organism evidence="13 14">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="13 14" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="14">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="14" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="14">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="12">Part of the high-affinity ATP-driven potassium transport (or Kdp) system, which catalyzes the hydrolysis of ATP coupled with the electrogenic transport of potassium into the cytoplasm. This subunit is responsible for energy coupling to the transport system and for the release of the potassium ions to the cytoplasm.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="12">
            <text>ATP + H2O + K(+)(out) = ADP + H(+) + K(+)(in) + phosphate</text>
            <dbReference type="Rhea" id="RHEA:16777"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:29103"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:43474"/>
            <dbReference type="ChEBI" id="CHEBI:456216"/>
            <dbReference type="EC" id="7.2.2.6"/>
        </reaction>
    </comment>
    <comment type="subunit">
        <text evidence="12">The system is composed of three essential subunits: KdpA, KdpB and KdpC.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="12">Cell inner membrane</location>
            <topology evidence="12">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="12">Belongs to the cation transport ATPase (P-type) (TC 3.A.3) family. Type IA subfamily.</text>
    </comment>
    <comment type="caution">
        <text evidence="12">Lacks conserved residue(s) required for the propagation of feature annotation.</text>
    </comment>
    <dbReference type="EC" id="7.2.2.6" evidence="12"/>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX38551.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012207720.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_5923"/>
    <dbReference type="PRIDE" id="A9C188"/>
    <dbReference type="EnsemblBacteria" id="ABX38551">
        <property type="protein sequence ID" value="ABX38551"/>
        <property type="gene ID" value="Daci_5923"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_5923"/>
    <dbReference type="eggNOG" id="COG2216">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_025728_2_0_4"/>
    <dbReference type="OMA" id="ILWLWFT"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005887">
        <property type="term" value="C:integral component of plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016887">
        <property type="term" value="F:ATP hydrolysis activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000287">
        <property type="term" value="F:magnesium ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008556">
        <property type="term" value="F:P-type potassium transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd02078">
        <property type="entry name" value="P-type_ATPase_K"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.1110.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.1000">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00285">
        <property type="entry name" value="KdpB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023299">
        <property type="entry name" value="ATPase_P-typ_cyto_dom_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018303">
        <property type="entry name" value="ATPase_P-typ_P_site"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023298">
        <property type="entry name" value="ATPase_P-typ_TM_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008250">
        <property type="entry name" value="ATPase_P-typ_transduc_dom_A_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036412">
        <property type="entry name" value="HAD-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023214">
        <property type="entry name" value="HAD_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006391">
        <property type="entry name" value="P-type_ATPase_bsu_IA"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001757">
        <property type="entry name" value="P_typ_ATPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR044492">
        <property type="entry name" value="P_typ_ATPase_HD_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43743">
        <property type="entry name" value="PTHR43743"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SFLD" id="SFLDF00027">
        <property type="entry name" value="p-type_atpase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56784">
        <property type="entry name" value="SSF56784"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF81653">
        <property type="entry name" value="SSF81653"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF81660">
        <property type="entry name" value="SSF81660"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF81665">
        <property type="entry name" value="SSF81665"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01494">
        <property type="entry name" value="ATPase_P-type"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01497">
        <property type="entry name" value="kdpB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00154">
        <property type="entry name" value="ATPASE_E1_E2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="12" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="12" id="KW-0997">Cell inner membrane</keyword>
    <keyword evidence="2 12" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="10 12" id="KW-0406">Ion transport</keyword>
    <keyword evidence="6 12" id="KW-0460">Magnesium</keyword>
    <keyword evidence="11 12" id="KW-0472">Membrane</keyword>
    <keyword evidence="12" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="12" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="4 12" id="KW-0597">Phosphoprotein</keyword>
    <keyword evidence="7 12" id="KW-0630">Potassium</keyword>
    <keyword evidence="3 12" id="KW-0633">Potassium transport</keyword>
    <keyword evidence="14" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="8 12" id="KW-1278">Translocase</keyword>
    <keyword evidence="5 12" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="9 12" id="KW-1133">Transmembrane helix</keyword>
    <keyword evidence="1 12" id="KW-0813">Transport</keyword>
    <feature type="transmembrane region" description="Helical" evidence="12">
        <location>
            <begin position="35"/>
            <end position="56"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="12">
        <location>
            <begin position="62"/>
            <end position="83"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="12">
        <location>
            <begin position="220"/>
            <end position="244"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="12">
        <location>
            <begin position="256"/>
            <end position="281"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="12">
        <location>
            <begin position="628"/>
            <end position="648"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="12">
        <location>
            <begin position="668"/>
            <end position="691"/>
        </location>
    </feature>
    <feature type="active site" description="4-aspartylphosphate intermediate" evidence="12">
        <location>
            <position position="314"/>
        </location>
    </feature>
    <feature type="binding site" evidence="12">
        <location>
            <position position="351"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="12">
        <location>
            <position position="355"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="12">
        <location>
            <begin position="384"/>
            <end position="391"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="12">
        <location>
            <position position="407"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="12">
        <location>
            <position position="530"/>
        </location>
        <ligand>
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="12">
        <location>
            <position position="534"/>
        </location>
        <ligand>
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022448"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022538"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022553"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022842"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022958"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00022967"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00023065"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="12">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00285"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="13">
        <source>
            <dbReference type="EMBL" id="ABX38551.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="14">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="694" mass="73300" checksum="3102C1D2547684E9" modified="2008-01-15" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="46" xmlns="http://uniprot.org/uniprot">
    <accession>A9C196</accession>
    <name>A9C196_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_5931</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX38559.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012207728.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_5931"/>
    <dbReference type="PRIDE" id="A9C196"/>
    <dbReference type="EnsemblBacteria" id="ABX38559">
        <property type="protein sequence ID" value="ABX38559"/>
        <property type="gene ID" value="Daci_5931"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_5931"/>
    <dbReference type="eggNOG" id="COG5492">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_029769_0_0_4"/>
    <dbReference type="OMA" id="NPLARDW"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="1">
        <location>
            <begin position="1"/>
            <end position="30"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5002732758" evidence="1">
        <location>
            <begin position="31"/>
            <end position="624"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX38559.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="624" mass="69732" checksum="B0AE5E8FA927CB09" modified="2008-01-15" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="81" xmlns="http://uniprot.org/uniprot">
    <accession>A9C1B5</accession>
    <name>A9C1B5_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Transcriptional regulator, LysR family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Daci_5950</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="4" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the LysR transcriptional regulatory family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX38578.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012207747.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_5950"/>
    <dbReference type="PRIDE" id="A9C1B5"/>
    <dbReference type="EnsemblBacteria" id="ABX38578">
        <property type="protein sequence ID" value="ABX38578"/>
        <property type="gene ID" value="Daci_5950"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_5950"/>
    <dbReference type="eggNOG" id="COG0583">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_039613_16_0_4"/>
    <dbReference type="OMA" id="KHRYITH"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003700">
        <property type="term" value="F:DNA-binding transcription factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005119">
        <property type="entry name" value="LysR_subst-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000847">
        <property type="entry name" value="Tscrpt_reg_HTH_LysR"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036390">
        <property type="entry name" value="WH_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00126">
        <property type="entry name" value="HTH_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03466">
        <property type="entry name" value="LysR_substrate"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00039">
        <property type="entry name" value="HTHLYSR"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46785">
        <property type="entry name" value="SSF46785"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50931">
        <property type="entry name" value="HTH_LYSR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HTH lysR-type" evidence="2">
        <location>
            <begin position="18"/>
            <end position="75"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00009437"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS50931"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ABX38578.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="321" mass="35287" checksum="C441682BD3524608" modified="2008-01-15" version="1">MPALVPLAAADTGNADANRFAELEMLILVAERGSLSAAARHLGISPSAVSKSMSRLEARLGVQLLQRSTRRLHLTPEGCQLFERGKRVLADLEELEACVAVRSEPRGLVRINTSSSTGKMLLVPLVPQLLLRHPGLSLELSFTDQIVDLVEAGTDIAVRWGQLPPSDMVARLLGHTRQVILASPQYLARMGRPLHPDELGHHVRLGWSYQRAIPHWPFLVDGQRVAVDIGEVVRVNDGDVMRELALHGTGLARLSLYHAWADVLAGRLVPVLEEFNTGDLEPIHAVYLGKPDRLPPRTRAVLDFLQAHVDLRHAEQLPALP</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="92" xmlns="http://uniprot.org/uniprot">
    <accession>A9C1X4</accession>
    <name>A9C1X4_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="6">Enoyl-[acyl-carrier-protein] reductase [NADH]</fullName>
            <ecNumber evidence="6">1.3.1.9</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="10" type="ordered locus">Daci_2972</name>
    </gene>
    <organism evidence="10 11">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="10 11" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="11">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="11" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="11">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="6">
            <text>a 2,3-saturated acyl-[ACP] + NAD(+) = a (2E)-enoyl-[ACP] + H(+) + NADH</text>
            <dbReference type="Rhea" id="RHEA:10240"/>
            <dbReference type="Rhea" id="RHEA-COMP:9925"/>
            <dbReference type="Rhea" id="RHEA-COMP:9926"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:57540"/>
            <dbReference type="ChEBI" id="CHEBI:57945"/>
            <dbReference type="ChEBI" id="CHEBI:78784"/>
            <dbReference type="ChEBI" id="CHEBI:78785"/>
            <dbReference type="EC" id="1.3.1.9"/>
        </reaction>
    </comment>
    <comment type="pathway">
        <text evidence="1">Lipid metabolism; fatty acid biosynthesis.</text>
    </comment>
    <comment type="similarity">
        <text evidence="2 6">Belongs to the short-chain dehydrogenases/reductases (SDR) family. FabI subfamily.</text>
    </comment>
    <dbReference type="EC" id="1.3.1.9" evidence="6"/>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX35610.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012204820.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_2972"/>
    <dbReference type="PRIDE" id="A9C1X4"/>
    <dbReference type="EnsemblBacteria" id="ABX35610">
        <property type="protein sequence ID" value="ABX35610"/>
        <property type="gene ID" value="Daci_2972"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_2972"/>
    <dbReference type="eggNOG" id="COG0623">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_010194_10_1_4"/>
    <dbReference type="OMA" id="GILDMIH"/>
    <dbReference type="UniPathway" id="UPA00094"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004318">
        <property type="term" value="F:enoyl-[acyl-carrier-protein] reductase (NADH) activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016631">
        <property type="term" value="F:enoyl-[acyl-carrier-protein] reductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006633">
        <property type="term" value="P:fatty acid biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniPathway"/>
    </dbReference>
    <dbReference type="CDD" id="cd05372">
        <property type="entry name" value="ENR_SDR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014358">
        <property type="entry name" value="Enoyl-ACP_Rdtase_NADH"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036291">
        <property type="entry name" value="NAD(P)-bd_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002347">
        <property type="entry name" value="SDR_fam"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43159">
        <property type="entry name" value="PTHR43159"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF000094">
        <property type="entry name" value="Enoyl-ACP_rdct"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00081">
        <property type="entry name" value="GDHRDH"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51735">
        <property type="entry name" value="SSF51735"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5 6" id="KW-0275">Fatty acid biosynthesis</keyword>
    <keyword evidence="5 6" id="KW-0276">Fatty acid metabolism</keyword>
    <keyword evidence="6" id="KW-0444">Lipid biosynthesis</keyword>
    <keyword evidence="5 6" id="KW-0443">Lipid metabolism</keyword>
    <keyword evidence="4 6 9" id="KW-0520">NAD</keyword>
    <keyword evidence="3 6" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="11" id="KW-1185">Reference proteome</keyword>
    <feature type="active site" description="Proton acceptor" evidence="7">
        <location>
            <position position="146"/>
        </location>
    </feature>
    <feature type="active site" description="Proton acceptor" evidence="7">
        <location>
            <position position="156"/>
        </location>
    </feature>
    <feature type="binding site" evidence="9">
        <location>
            <position position="13"/>
        </location>
        <ligand>
            <name>NAD(+)</name>
            <dbReference type="ChEBI" id="CHEBI:57540"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="9">
        <location>
            <begin position="19"/>
            <end position="20"/>
        </location>
        <ligand>
            <name>NAD(+)</name>
            <dbReference type="ChEBI" id="CHEBI:57540"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="9">
        <location>
            <begin position="64"/>
            <end position="65"/>
        </location>
        <ligand>
            <name>NAD(+)</name>
            <dbReference type="ChEBI" id="CHEBI:57540"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="9">
        <location>
            <position position="92"/>
        </location>
        <ligand>
            <name>NAD(+)</name>
            <dbReference type="ChEBI" id="CHEBI:57540"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="8">
        <location>
            <position position="95"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="9">
        <location>
            <position position="163"/>
        </location>
        <ligand>
            <name>NAD(+)</name>
            <dbReference type="ChEBI" id="CHEBI:57540"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="9">
        <location>
            <begin position="196"/>
            <end position="200"/>
        </location>
        <ligand>
            <name>NAD(+)</name>
            <dbReference type="ChEBI" id="CHEBI:57540"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00005194"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00009233"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023002"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023027"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023160"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="PIRNR" id="PIRNR000094"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="PIRSR" id="PIRSR000094-1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="PIRSR" id="PIRSR000094-2"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="PIRSR" id="PIRSR000094-3"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="EMBL" id="ABX35610.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="266" mass="28034" checksum="63E8F50F49CFDB8B" modified="2008-01-15" version="1">MGFLAGKKLLITGVLSNRSIAYGIAKACHAQGAELAFSYVGERFKDRITEFAAEFDSKLIFDCDVADDAQIDKLFADLGATWGKFDGFVHSIGFAPREAIAGNFLDGLSREGFKIAHDISAYSFPAMAKAALPYLNDKSSLLTLSYLGALRSIPNYNTMGLAKASLEASVRYLAEAVGRTADGRAIRANGISAGPIKTLAASGIKDFGKLLGRVADASPLRRNVTIEDVGNVAAFLLSDLASGVTAEITYVDGGFSQTAGLSADQV</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="66" xmlns="http://uniprot.org/uniprot">
    <accession>A9C1Y9</accession>
    <name>A9C1Y9_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Thioredoxin domain</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_2987</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX35625.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012204831.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_2987"/>
    <dbReference type="PRIDE" id="A9C1Y9"/>
    <dbReference type="EnsemblBacteria" id="ABX35625">
        <property type="protein sequence ID" value="ABX35625"/>
        <property type="gene ID" value="Daci_2987"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_2987"/>
    <dbReference type="eggNOG" id="COG0526">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_141074_2_0_4"/>
    <dbReference type="OMA" id="CAQWCGT"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036249">
        <property type="entry name" value="Thioredoxin-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013766">
        <property type="entry name" value="Thioredoxin_domain"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00085">
        <property type="entry name" value="Thioredoxin"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52833">
        <property type="entry name" value="SSF52833"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51352">
        <property type="entry name" value="THIOREDOXIN_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Thioredoxin" evidence="1">
        <location>
            <begin position="1"/>
            <end position="124"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS51352"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX35625.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="133" mass="14463" checksum="8DB0A36E1DF09F24" modified="2008-01-15" version="1">MDSMAGKLPGDSDATRPWWVVCLCAQWCGVCNQYRSTFAELASQFPQMRFVWLDVEDREDVAGDLDIETFPSLLVADGERARFLGPVLPQAGVVARMLQSLAQDPGAAPADPAEAQALLRRLQSAQGLERVGA</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="55" xmlns="http://uniprot.org/uniprot">
    <accession>A9C2G5</accession>
    <name>A9C2G5_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="3">CsbD family protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Daci_3473</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="4" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the UPF0337 (CsbD) family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX36109.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012205309.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_3473"/>
    <dbReference type="PRIDE" id="A9C2G5"/>
    <dbReference type="EnsemblBacteria" id="ABX36109">
        <property type="protein sequence ID" value="ABX36109"/>
        <property type="gene ID" value="Daci_3473"/>
    </dbReference>
    <dbReference type="GeneID" id="60687698"/>
    <dbReference type="KEGG" id="dac:Daci_3473"/>
    <dbReference type="eggNOG" id="COG3237">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_135567_3_3_4"/>
    <dbReference type="OMA" id="NYGDAKE"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.1470.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008462">
        <property type="entry name" value="CsbD"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036629">
        <property type="entry name" value="YjbJ_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF05532">
        <property type="entry name" value="CsbD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF69047">
        <property type="entry name" value="SSF69047"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="CsbD" evidence="2">
        <location>
            <begin position="4"/>
            <end position="56"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00009129"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF05532"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ABX36109.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="59" mass="6306" checksum="E77EA715DEDC9DC5" modified="2008-01-15" version="1">MNTDQIKGTLKDAAGKVQQKAGELIDSPEQQAKGIAKQVEGTAQKKLGDVKEVLKDAKK</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2021-06-02" version="37" xmlns="http://uniprot.org/uniprot">
    <accession>A9C2K7</accession>
    <name>A9C2K7_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Rhs family protein-like protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Daci_3724</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="2" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX36356.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_3724"/>
    <dbReference type="EnsemblBacteria" id="ABX36356">
        <property type="protein sequence ID" value="ABX36356"/>
        <property type="gene ID" value="Daci_3724"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_3724"/>
    <dbReference type="eggNOG" id="COG3209">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_975647_0_0_4"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001826">
        <property type="entry name" value="RHS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR022385">
        <property type="entry name" value="Rhs_assc_core"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03527">
        <property type="entry name" value="RHS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR03696">
        <property type="entry name" value="Rhs_assc_core"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ABX36356.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="285" mass="32083" checksum="ED0F4AFFD36F20CD" modified="2008-01-15" version="1">MPIAAEINGRLYAIHTDHLNTPRRLTNQQGQVAWQWLISGFGEVRPTTGDRGYGQTVSGPSYAQAVKFDLRYPGQVFDEETGLSYNLHRYYDAATGRYIQADPIGLEGGWNRFGYVGGNPLIYGDPQGLFKVMWKGDSFATPPPPWVKQLREYGRKLEDKIDSLCASDSSYLKSYFDKWTVGTDGRRGSPTTDVDNFHTNFTSDYFGLTSNFINPFENSREDPYAVFLHEFRHLMKGNRILSPGGSEYLKYRLNGTTGGLAVELDADSYALELFKGKCTCGSLRR</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="46" xmlns="http://uniprot.org/uniprot">
    <accession>A9C2L4</accession>
    <name>A9C2L4_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_3731</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX36363.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012205557.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="PRIDE" id="A9C2L4"/>
    <dbReference type="EnsemblBacteria" id="ABX36363">
        <property type="protein sequence ID" value="ABX36363"/>
        <property type="gene ID" value="Daci_3731"/>
    </dbReference>
    <dbReference type="GeneID" id="60687959"/>
    <dbReference type="KEGG" id="dac:Daci_3731"/>
    <dbReference type="eggNOG" id="ENOG503165G">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_121976_2_1_4"/>
    <dbReference type="OMA" id="IHARRFE"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="15"/>
            <end position="34"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="40"/>
            <end position="64"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="76"/>
            <end position="96"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="108"/>
            <end position="126"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX36363.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="129" mass="14227" checksum="49524E7CDCEB89DC" modified="2008-01-15" version="1">MNQTTVTNRRYQKELGFALLLYMALLVGALLLSADMQAGALRTALLLSPMLAFALAVRAIVRLVRDTDEFLRKSMLEQLAIAAAGTAGITFTYGFLEMAGFPKLSMFMVWPLMGALWVAASVAHWLRSR</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="71" xmlns="http://uniprot.org/uniprot">
    <accession>A9C2M2</accession>
    <name>A9C2M2_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="8">Amino acid permease-associated region</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="8" type="ordered locus">Daci_3739</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="9" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX36371.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012205565.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="ABX36371">
        <property type="protein sequence ID" value="ABX36371"/>
        <property type="gene ID" value="Daci_3739"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_3739"/>
    <dbReference type="eggNOG" id="COG1113">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_007946_9_3_4"/>
    <dbReference type="OMA" id="FTHLWND"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006865">
        <property type="term" value="P:amino acid transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0055085">
        <property type="term" value="P:transmembrane transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004841">
        <property type="entry name" value="AA-permease/SLC12A_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004840">
        <property type="entry name" value="Amoino_acid_permease_CS"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00324">
        <property type="entry name" value="AA_permease"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00218">
        <property type="entry name" value="AMINO_ACID_PERMEASE_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="5 6" id="KW-0472">Membrane</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 6" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="4 6" id="KW-1133">Transmembrane helix</keyword>
    <keyword evidence="2" id="KW-0813">Transport</keyword>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="27"/>
            <end position="44"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="50"/>
            <end position="70"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="107"/>
            <end position="129"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="135"/>
            <end position="156"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="168"/>
            <end position="190"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="210"/>
            <end position="230"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="251"/>
            <end position="270"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="282"/>
            <end position="303"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="346"/>
            <end position="364"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="370"/>
            <end position="394"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="415"/>
            <end position="434"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="440"/>
            <end position="459"/>
        </location>
    </feature>
    <feature type="domain" description="AA_permease" evidence="7">
        <location>
            <begin position="26"/>
            <end position="465"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022448"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="Pfam" id="PF00324"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="ABX36371.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="482" mass="52109" checksum="E90998A39197AC5D" modified="2008-01-15" version="1">MTHKAPPAGQGLHGQDDLQRNLTNRHIQLIAIGGAIGTGLFMGSGKTISLAGPSIIFVYTIIGVMLFFVMRAMGELLLSNLQYRSFIDFSSDLLGPWAGFFTGWTYWFCWIVTGIADVIAISAYSQFWFPDLPQWAPAIACVGLLLGLNLLTVKLFGEIEFWFAMIKIVAIVALVGTGLYMVGAAFVSPAGRTASLSNLWNDGGMFPNGMMGFFAGFQIAVFAFVGIELVGTTAAEAKDPERTLPRAINSIPVRIIVFYVLALIAIMAVTPWRDVVPGKSPFVELFVLAGLPAAAGVINFVVLTSAASSANSGVFSTSRMLYGLALKGDAPKTFHRLSRSSVPSRGLLFSCTCLLAGAFLMWVVPDLVEAFTLVTTVSAILFMFVWSLILLSYIAYRRQRAALHEASRYKMPGGVAMCWACLVFFAAILGLLTLQADTRQALVVTPAWFALLAIAYQFVRRQASRQSAERSTALAGTAAEPR</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2021-06-02" version="32" xmlns="http://uniprot.org/uniprot">
    <accession>A9C2T1</accession>
    <name>A9C2T1_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Daci_4104</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="2" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX36735.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012205926.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_4104"/>
    <dbReference type="EnsemblBacteria" id="ABX36735">
        <property type="protein sequence ID" value="ABX36735"/>
        <property type="gene ID" value="Daci_4104"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_4104"/>
    <dbReference type="HOGENOM" id="CLU_2842540_0_0_4"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ABX36735.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="65" mass="7597" checksum="17459CE05D693C4D" modified="2008-01-15" version="1">MSTTPAHVVIQFWVVSALYASECHWLSWLYRRDSTLGRVRRYANAARARAVVVYDRVLNQEDLID</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="52" xmlns="http://uniprot.org/uniprot">
    <accession>A9C318</accession>
    <name>A9C318_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Cold-shock protein DNA-binding</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_4191</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX36822.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012205995.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="PRIDE" id="A9C318"/>
    <dbReference type="EnsemblBacteria" id="ABX36822">
        <property type="protein sequence ID" value="ABX36822"/>
        <property type="gene ID" value="Daci_4191"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_4191"/>
    <dbReference type="eggNOG" id="COG1700">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_007982_0_0_4"/>
    <dbReference type="OMA" id="DGRFKNF"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.50.140">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002059">
        <property type="entry name" value="CSP_DNA-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012340">
        <property type="entry name" value="NA-bd_OB-fold"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00313">
        <property type="entry name" value="CSD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="CSD" evidence="1">
        <location>
            <begin position="746"/>
            <end position="812"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF00313"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX36822.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="1111" mass="126961" checksum="8EA3441FCBBC7536" modified="2008-01-15" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="66" xmlns="http://uniprot.org/uniprot">
    <accession>A9C360</accession>
    <name>A9C360_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">FAD-dependent pyridine nucleotide-disulphide oxidoreductase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_4542</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX37171.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012206341.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_4542"/>
    <dbReference type="PRIDE" id="A9C360"/>
    <dbReference type="EnsemblBacteria" id="ABX37171">
        <property type="protein sequence ID" value="ABX37171"/>
        <property type="gene ID" value="Daci_4542"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_4542"/>
    <dbReference type="eggNOG" id="COG0492">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_031864_5_0_4"/>
    <dbReference type="OMA" id="ALMLPDW"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016491">
        <property type="term" value="F:oxidoreductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.50.50.60">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036188">
        <property type="entry name" value="FAD/NAD-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023753">
        <property type="entry name" value="FAD/NAD-binding_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07992">
        <property type="entry name" value="Pyr_redox_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51905">
        <property type="entry name" value="SSF51905"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Pyr_redox_2" evidence="1">
        <location>
            <begin position="5"/>
            <end position="285"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF07992"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX37171.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="299" mass="31577" checksum="69E055AD7B7529B1" modified="2008-01-15" version="1">MKHVDFAVIGGSYAGLSAALQLARARRQVLVVDAGLRRNRFVDQAGETSHGFLTQDGVAPAQIAAQARQQLMAYPTVQWLDGTAEDARVAPDGRLEFRAAGTAISAARLVLALGVHDSLPPVPGLAERWGRSVFHCPYCHGYEMNAGRIGIIASSALAHHHAVMLPDWGQTTLLLNGAYTPSDDELAAFARRSTQVEATPIARLEGRADVLLQDGRRLVMDGLFTQPRTRIASPVAEQLGCALEEGPMGTFIKVAEGQATSVPNVFACGDAARAAGNAAMAVSDGAMAGIGAHRSMMGW</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2021-06-02" version="60" xmlns="http://uniprot.org/uniprot">
    <accession>A9C3A2</accession>
    <name>A9C3A2_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Sugar-phosphate isomerase, RpiB/LacA/LacB family</fullName>
            <ecNumber evidence="2">5.3.1.26</ecNumber>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_4584</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the LacAB/RpiB family.</text>
    </comment>
    <dbReference type="EC" id="5.3.1.26" evidence="2"/>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX37213.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012206383.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_4584"/>
    <dbReference type="EnsemblBacteria" id="ABX37213">
        <property type="protein sequence ID" value="ABX37213"/>
        <property type="gene ID" value="Daci_4584"/>
    </dbReference>
    <dbReference type="GeneID" id="60688884"/>
    <dbReference type="KEGG" id="dac:Daci_4584"/>
    <dbReference type="eggNOG" id="COG0698">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_091396_4_1_4"/>
    <dbReference type="OMA" id="DYPPFCL"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0050044">
        <property type="term" value="F:galactose-6-phosphate isomerase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005975">
        <property type="term" value="P:carbohydrate metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.1400.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004785">
        <property type="entry name" value="RpiB"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003500">
        <property type="entry name" value="RpiB_LacA_LacB"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036569">
        <property type="entry name" value="RpiB_LacA_LacB_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02502">
        <property type="entry name" value="LacAB_rpiB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF005384">
        <property type="entry name" value="RpiB_LacA_B"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF89623">
        <property type="entry name" value="SSF89623"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01120">
        <property type="entry name" value="rpiB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00689">
        <property type="entry name" value="rpiB_lacA_lacB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2" id="KW-0413">Isomerase</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00008754"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX37213.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="157" mass="16178" checksum="3F14AEFF51BE735C" modified="2008-01-15" version="1">MKLAIGCDEAACDLKNAVKQHLLAQGHEVADFGTHDGEPVLYPDIGIAVAQAIVQGRHERGVLLCGTGIGMAIAANKVAGIRAAQAHDTYSAERASRSNDAQIITLGSRVIGVELAKAIVDRFLASRFDGGSSALKVDAITGFERSQAAAAGRGQGA</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="100" xmlns="http://uniprot.org/uniprot">
    <accession>A9C3A5</accession>
    <name>A9C3A5_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="10">Sulfate ABC transporter, ATPase subunit</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="10" type="ordered locus">Daci_4587</name>
    </gene>
    <organism evidence="10 11">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="10 11" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="11">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="11" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="11">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX37216.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012206386.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_4587"/>
    <dbReference type="PRIDE" id="A9C3A5"/>
    <dbReference type="EnsemblBacteria" id="ABX37216">
        <property type="protein sequence ID" value="ABX37216"/>
        <property type="gene ID" value="Daci_4587"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_4587"/>
    <dbReference type="eggNOG" id="COG1118">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_000604_1_1_4"/>
    <dbReference type="OMA" id="HLGWEIQ"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043190">
        <property type="term" value="C:ATP-binding cassette (ABC) transporter complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015419">
        <property type="term" value="F:ABC-type sulfate transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0102025">
        <property type="term" value="F:ABC-type thiosulfate transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd03296">
        <property type="entry name" value="ABC_CysA_sulfate_importer"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003593">
        <property type="entry name" value="AAA+_ATPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003439">
        <property type="entry name" value="ABC_transporter-like_ATP-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017871">
        <property type="entry name" value="ABC_transporter-like_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041193">
        <property type="entry name" value="CysA_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008995">
        <property type="entry name" value="Mo/tungstate-bd_C_term_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005666">
        <property type="entry name" value="Sulph_transpt1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR024765">
        <property type="entry name" value="TOBE-like"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00005">
        <property type="entry name" value="ABC_tran"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF17850">
        <property type="entry name" value="CysA_C_terminal"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12857">
        <property type="entry name" value="TOBE_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00382">
        <property type="entry name" value="AAA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50331">
        <property type="entry name" value="SSF50331"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00968">
        <property type="entry name" value="3a0106s01"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00211">
        <property type="entry name" value="ABC_TRANSPORTER_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50893">
        <property type="entry name" value="ABC_TRANSPORTER_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4 8" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="2" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="7" id="KW-0472">Membrane</keyword>
    <keyword evidence="3 8" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="11" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="6" id="KW-0764">Sulfate transport</keyword>
    <keyword evidence="5" id="KW-1278">Translocase</keyword>
    <keyword evidence="1" id="KW-0813">Transport</keyword>
    <feature type="domain" description="ABC transporter" evidence="9">
        <location>
            <begin position="3"/>
            <end position="237"/>
        </location>
    </feature>
    <feature type="binding site" evidence="8">
        <location>
            <begin position="35"/>
            <end position="42"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022448"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022967"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023032"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00434"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="9">
        <source>
            <dbReference type="PROSITE" id="PS50893"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="EMBL" id="ABX37216.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="375" mass="41763" checksum="B2662475E62C70CE" modified="2008-01-15" version="1">MSIEIRNVSKQFGDFQALRDVSLDIQSGELIALLGPSGCGKTTLLRIIAGLETPDVGSIHFSGEDTTDVHVRERNVGFVFQHYALFRHMTVFENVAFGLRVKPRSQRPSEAQIREKVMSLLKLVQLDWIAERFPSQLSGGQRQRIALARALAVEPKVLLLDEPFGALDAKVRKELRRWLRRLHDELHVTSIFVTHDQEEALEVADRVVVINQGRIEQEGTPQQVWDNPATPFVYGFLGDVNLFKGRASDGRVYLDDGTQLDSHDAKGASDSKAFAYVRPHDLEVERYSPGQNLDVQGRPTGIVVQLSRAIVVGPIARLELIPSESTESTDNAEEGGLIEAQIPAQQFRDMALREGETLVVTPRRAKVFLDEAAGI</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2021-09-29" version="50" xmlns="http://uniprot.org/uniprot">
    <accession>A9C3D9</accession>
    <name>A9C3D9_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">BFD domain protein (2Fe-2S)-binding domain protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_4621</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX37250.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012206420.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_4621"/>
    <dbReference type="EnsemblBacteria" id="ABX37250">
        <property type="protein sequence ID" value="ABX37250"/>
        <property type="gene ID" value="Daci_4621"/>
    </dbReference>
    <dbReference type="GeneID" id="60688845"/>
    <dbReference type="KEGG" id="dac:Daci_4621"/>
    <dbReference type="eggNOG" id="COG2906">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_159205_2_1_4"/>
    <dbReference type="OMA" id="CVCHRVS"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.1100">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007419">
        <property type="entry name" value="BFD-like_2Fe2S-bd_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041854">
        <property type="entry name" value="BFD-like_2Fe2S-bd_dom_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04324">
        <property type="entry name" value="Fer2_BFD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Fer2_BFD" evidence="1">
        <location>
            <begin position="2"/>
            <end position="49"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF04324"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX37250.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="90" mass="9731" checksum="89F6BA59C8F1E12D" modified="2008-01-15" version="1">MIVCVCRRVSDREIARHAHAGMSFDEIQFELGIAMQCGRCESCARDVVAQCCASQPVAAIHNEVAAQTVQLANNILESKAWSSSQHLSAA</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="57" xmlns="http://uniprot.org/uniprot">
    <accession>A9C3K4</accession>
    <name>A9C3K4_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Resolvase helix-turn-helix domain protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Daci_4686</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="4" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX37315.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012206485.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_4686"/>
    <dbReference type="PRIDE" id="A9C3K4"/>
    <dbReference type="EnsemblBacteria" id="ABX37315">
        <property type="protein sequence ID" value="ABX37315"/>
        <property type="gene ID" value="Daci_4686"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_4686"/>
    <dbReference type="HOGENOM" id="CLU_2080943_0_0_4"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009057">
        <property type="entry name" value="Homeobox-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014875">
        <property type="entry name" value="Mor_transcription_activator"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08765">
        <property type="entry name" value="Mor"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46689">
        <property type="entry name" value="SSF46689"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Mor" evidence="2">
        <location>
            <begin position="50"/>
            <end position="116"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="25"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF08765"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ABX37315.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="126" mass="14004" checksum="9BA7C096B89C0914" modified="2008-01-15" version="1">MTSKTNTTLPLMQPDAAKSPATPEADFAPDLVDRMFDYLVELLPELRGSPAIVERVQQQLRSEFAGQDAYIPARSSVGKAEERRQVLRLWNGRNAKAVARTLGISRATVYRYLEASRLNPSQVSGK</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="29" xmlns="http://uniprot.org/uniprot">
    <accession>A9C3L2</accession>
    <name>A9C3L2_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_4694</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX37323.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_4694"/>
    <dbReference type="PRIDE" id="A9C3L2"/>
    <dbReference type="EnsemblBacteria" id="ABX37323">
        <property type="protein sequence ID" value="ABX37323"/>
        <property type="gene ID" value="Daci_4694"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_4694"/>
    <dbReference type="HOGENOM" id="CLU_1400498_0_0_4"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="76"/>
            <end position="166"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="96"/>
            <end position="122"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="138"/>
            <end position="152"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX37323.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="194" mass="21477" checksum="F03D62E7015BB7E5" modified="2008-01-15" version="1">MARIEWELELPAGSFWFPPCGETWLEDDRWHGGSALPPDSEISLAASGCPLNESRGHSPCVARRNARLDSACSRALRSGSDTASERSHSARAWHRNSSRRSSSSMGTSLQQQTQSPASHHQIKNQIHYGLASRAPRELSACQPNSPTAYTKSADHQGKPKVGTHHSLSIKSVLRQEWPGIWEASRPKKLTRKIH</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="72" xmlns="http://uniprot.org/uniprot">
    <accession>A9BLG3</accession>
    <name>A9BLG3_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Molybdopterin dehydrogenase FAD-binding</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Daci_3817</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="4" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX36448.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012205642.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_3817"/>
    <dbReference type="PRIDE" id="A9BLG3"/>
    <dbReference type="EnsemblBacteria" id="ABX36448">
        <property type="protein sequence ID" value="ABX36448"/>
        <property type="gene ID" value="Daci_3817"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_3817"/>
    <dbReference type="eggNOG" id="COG1319">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_058050_1_0_4"/>
    <dbReference type="OMA" id="GGTHIYR"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0071949">
        <property type="term" value="F:FAD binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016491">
        <property type="term" value="F:oxidoreductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.43.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.465.10">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005107">
        <property type="entry name" value="CO_DH_flav_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036683">
        <property type="entry name" value="CO_DH_flav_C_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016166">
        <property type="entry name" value="FAD-bd_PCMH"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036318">
        <property type="entry name" value="FAD-bd_PCMH-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016167">
        <property type="entry name" value="FAD-bd_PCMH_sub1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016169">
        <property type="entry name" value="FAD-bd_PCMH_sub2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002346">
        <property type="entry name" value="Mopterin_DH_FAD-bd"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03450">
        <property type="entry name" value="CO_deh_flav_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00941">
        <property type="entry name" value="FAD_binding_5"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM01092">
        <property type="entry name" value="CO_deh_flav_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55447">
        <property type="entry name" value="SSF55447"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56176">
        <property type="entry name" value="SSF56176"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51387">
        <property type="entry name" value="FAD_PCMH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0274">FAD</keyword>
    <keyword evidence="1" id="KW-0285">Flavoprotein</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="FAD-binding PCMH-type" evidence="2">
        <location>
            <begin position="1"/>
            <end position="223"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022827"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS51387"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ABX36448.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="316" mass="33134" checksum="EABD5D3D5710888A" modified="2008-01-15" version="1">MIAFTYERAQSPAQAAAAVAARPGARFIAGGTNLLDLMKLQIETPVHLVDVNGTGMDTVEPTAQGGLRIGALVRNSDLAAHARVRRDYGVLTRALVAGASGQLRNMATTGGNLLQRTRCPYFYDTNMPCNKRVPGSGCSAIAGVSRQHAVIGGSEACIATHPSDMAVALRALDATVETVQADGKARVIPIADFHRLPGSTPQVETALQAGELITSVTLPPPPGGTHIYHKVRDRASYAFALVSVAAIVQRDGSGRVALGGVAHKPWRMEAAEAQMPQGAKAVADRLLAGARPTQDNAFKLPLAERTLAAVLDQARN</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="74" xmlns="http://uniprot.org/uniprot">
    <accession>A9BLX7</accession>
    <name>A9BLX7_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized peroxidase-related enzyme</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Daci_4285</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="4" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX36916.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_4285"/>
    <dbReference type="PRIDE" id="A9BLX7"/>
    <dbReference type="EnsemblBacteria" id="ABX36916">
        <property type="protein sequence ID" value="ABX36916"/>
        <property type="gene ID" value="Daci_4285"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_4285"/>
    <dbReference type="eggNOG" id="COG2128">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_082760_4_0_4"/>
    <dbReference type="OMA" id="MRPNDEF"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004601">
        <property type="term" value="F:peroxidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051920">
        <property type="term" value="F:peroxiredoxin activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.1290.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029032">
        <property type="entry name" value="AhpD-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004675">
        <property type="entry name" value="AhpD_core"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003779">
        <property type="entry name" value="CMD-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010195">
        <property type="entry name" value="Uncharacterised_peroxidase-rel"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02627">
        <property type="entry name" value="CMD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF69118">
        <property type="entry name" value="SSF69118"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00778">
        <property type="entry name" value="ahpD_dom"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01926">
        <property type="entry name" value="peroxid_rel"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="3" id="KW-0575">Peroxidase</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="CMD" evidence="2">
        <location>
            <begin position="61"/>
            <end position="108"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="24"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF02627"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ABX36916.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="207" mass="23754" checksum="3142B2A52C755188" modified="2008-01-15" version="1">MARNDNHHTQETRHMATARYPQPELSSLPEDIRTRILEVQEKAGFIPNVFLAFARRPAEWRAFFAYHDALMLKEEGSLTKGEREMIVTTTSAANQCLYCVVAHGAILRIYEKQPYVADQVAVNYRKADISARQRAMLDFAMKVCERSHEICEADFEALYPHGFDDEDIWDIAAITAFFGLSNRMASFAGMQPNPEFFLMGRVPREKK</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="42" xmlns="http://uniprot.org/uniprot">
    <accession>A9BLZ5</accession>
    <name>A9BLZ5_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Daci_4303</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="2" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX36934.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012206106.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_4303"/>
    <dbReference type="PRIDE" id="A9BLZ5"/>
    <dbReference type="EnsemblBacteria" id="ABX36934">
        <property type="protein sequence ID" value="ABX36934"/>
        <property type="gene ID" value="Daci_4303"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_4303"/>
    <dbReference type="eggNOG" id="ENOG502ZV0V">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_103261_0_0_4"/>
    <dbReference type="OMA" id="GWAVEMI"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ABX36934.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="163" mass="18027" checksum="65557586C4649E82" modified="2008-01-15" version="1">MSAELEQEVVSIFEDRLWHHNGWEARVIKNEDDDGWAVAMTQDGQVEPSLVGPWTMGRDKKNPKPLDVSAFNTLVKTAHEVMRRHEQHLAAQLHKDVQIVVGGSRVTVSLDIEPDEDNPSATLTATAADGSELAKVGVRPDHQLTRTSAQAWAEAGYPRPSED</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="90" xmlns="http://uniprot.org/uniprot">
    <accession>A9BM00</accession>
    <name>A9BM00_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="6">Phosphoglycolate phosphatase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ordered locus">Daci_4716</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="7" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </cofactor>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX37345.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012206515.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_4716"/>
    <dbReference type="PRIDE" id="A9BM00"/>
    <dbReference type="EnsemblBacteria" id="ABX37345">
        <property type="protein sequence ID" value="ABX37345"/>
        <property type="gene ID" value="Daci_4716"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_4716"/>
    <dbReference type="eggNOG" id="COG0546">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_045011_19_1_4"/>
    <dbReference type="OMA" id="TPHAKPH"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016791">
        <property type="term" value="F:phosphatase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005975">
        <property type="term" value="P:carbohydrate metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.150.240">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.1000">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036412">
        <property type="entry name" value="HAD-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006439">
        <property type="entry name" value="HAD-SF_hydro_IA"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041492">
        <property type="entry name" value="HAD_2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023214">
        <property type="entry name" value="HAD_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023198">
        <property type="entry name" value="PGP-like_dom2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006346">
        <property type="entry name" value="PGPase/MupP"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13419">
        <property type="entry name" value="HAD_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00413">
        <property type="entry name" value="HADHALOGNASE"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56784">
        <property type="entry name" value="SSF56784"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01549">
        <property type="entry name" value="HAD-SF-IA-v1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01509">
        <property type="entry name" value="HAD-SF-IA-v3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01449">
        <property type="entry name" value="PGP_bact"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="5" id="KW-0119">Carbohydrate metabolism</keyword>
    <keyword evidence="3" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="4" id="KW-0460">Magnesium</keyword>
    <keyword evidence="2" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001946"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022842"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023277"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="ABX37345.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="221" mass="24049" checksum="8BB64A2FBD7E4E4E" modified="2008-01-15" version="1">MWQEIRAVLFDLDGTLIDSAPDLGAAADRMRIDRGLQSLPYEQYRPMAGAGARGMLGVGFGLTPDSPEFPEMREEFFRNYEQCMTERTYAFDGVPELIAQLQAASMPWGVVTNKSMRFTDPLTQQMPLFASAGAIVSGDTTPHAKPHPAPLLEAAARIGLPPQCFVYVGDDERDIVAGKAAGMKTVAACYGYLGAAGDTLQWQADAQIYSPLELLKLLERG</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="92" xmlns="http://uniprot.org/uniprot">
    <accession>A9BME7</accession>
    <name>A9BME7_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">2-isopropylmalate synthase</fullName>
            <ecNumber evidence="3">2.3.3.13</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="3">Alpha-IPM synthase</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="3">Alpha-isopropylmalate synthase</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="3" type="primary">leuA</name>
        <name evidence="5" type="ordered locus">Daci_4863</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="6" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="3">Catalyzes the condensation of the acetyl group of acetyl-CoA with 3-methyl-2-oxobutanoate (2-oxoisovalerate) to form 3-carboxy-3-hydroxy-4-methylpentanoate (2-isopropylmalate).</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="3">
            <text>3-methyl-2-oxobutanoate + acetyl-CoA + H2O = (2S)-2-isopropylmalate + CoA + H(+)</text>
            <dbReference type="Rhea" id="RHEA:21524"/>
            <dbReference type="ChEBI" id="CHEBI:1178"/>
            <dbReference type="ChEBI" id="CHEBI:11851"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:57287"/>
            <dbReference type="ChEBI" id="CHEBI:57288"/>
            <dbReference type="EC" id="2.3.3.13"/>
        </reaction>
    </comment>
    <comment type="pathway">
        <text evidence="3">Amino-acid biosynthesis; L-leucine biosynthesis; L-leucine from 3-methyl-2-oxobutanoate: step 1/4.</text>
    </comment>
    <comment type="subunit">
        <text evidence="3">Homotetramer.</text>
    </comment>
    <comment type="similarity">
        <text evidence="3">Belongs to the alpha-IPM synthase/homocitrate synthase family. LeuA type 2 subfamily.</text>
    </comment>
    <dbReference type="EC" id="2.3.3.13" evidence="3"/>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX37492.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012206662.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_4863"/>
    <dbReference type="PRIDE" id="A9BME7"/>
    <dbReference type="EnsemblBacteria" id="ABX37492">
        <property type="protein sequence ID" value="ABX37492"/>
        <property type="gene ID" value="Daci_4863"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_4863"/>
    <dbReference type="eggNOG" id="COG0119">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_004588_3_0_4"/>
    <dbReference type="OMA" id="WPDKVID"/>
    <dbReference type="UniPathway" id="UPA00048">
        <property type="reaction ID" value="UER00070"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003852">
        <property type="term" value="F:2-isopropylmalate synthase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009098">
        <property type="term" value="P:leucine biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd07942">
        <property type="entry name" value="DRE_TIM_LeuA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.20.20.70">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.160.270">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00572">
        <property type="entry name" value="LeuA_type2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013709">
        <property type="entry name" value="2-isopropylmalate_synth_dimer"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002034">
        <property type="entry name" value="AIPM/Hcit_synth_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013785">
        <property type="entry name" value="Aldolase_TIM"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005668">
        <property type="entry name" value="IPM_Synthase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036230">
        <property type="entry name" value="LeuA_allosteric_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR039371">
        <property type="entry name" value="LeuA_N_DRE-TIM"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000891">
        <property type="entry name" value="PYR_CT"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00682">
        <property type="entry name" value="HMGL-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08502">
        <property type="entry name" value="LeuA_dimer"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00917">
        <property type="entry name" value="LeuA_dimer"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF110921">
        <property type="entry name" value="SSF110921"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00970">
        <property type="entry name" value="leuA_yeast"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00815">
        <property type="entry name" value="AIPM_HOMOCIT_SYNTH_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00816">
        <property type="entry name" value="AIPM_HOMOCIT_SYNTH_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50991">
        <property type="entry name" value="PYR_CT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-0012">Acyltransferase</keyword>
    <keyword evidence="3" id="KW-0028">Amino-acid biosynthesis</keyword>
    <keyword evidence="2 3" id="KW-0100">Branched-chain amino acid biosynthesis</keyword>
    <keyword evidence="3" id="KW-0432">Leucine biosynthesis</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1 3 5" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Pyruvate carboxyltransferase" evidence="4">
        <location>
            <begin position="33"/>
            <end position="307"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023304"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00572"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="PROSITE" id="PS50991"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="ABX37492.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="563" mass="62766" checksum="17746B26B4B6CF79" modified="2008-01-15" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="46" xmlns="http://uniprot.org/uniprot">
    <accession>A9BMG7</accession>
    <name>A9BMG7_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_4883</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX37512.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_4883"/>
    <dbReference type="PRIDE" id="A9BMG7"/>
    <dbReference type="EnsemblBacteria" id="ABX37512">
        <property type="protein sequence ID" value="ABX37512"/>
        <property type="gene ID" value="Daci_4883"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_4883"/>
    <dbReference type="eggNOG" id="ENOG5030717">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_083007_1_0_4"/>
    <dbReference type="OMA" id="CSMARGW"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR021312">
        <property type="entry name" value="DUF2889"/>
    </dbReference>
    <dbReference type="Pfam" id="PF11136">
        <property type="entry name" value="DUF2889"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="38"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="204"/>
            <end position="224"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="1"/>
            <end position="20"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="206"/>
            <end position="224"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX37512.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="224" mass="24294" checksum="3EDEB52E404A7C2C" modified="2008-01-15" version="1">MTENRGMPGASRQPATERTASPMPLSPIPDRTPQHERDVRYRSYARADGLWDIEGELRDSKTHDIELSGGRHMPAGTAIHHMWIRTTVDARLVVQAIEVVMDSHPLGHCPEATRALQKMVGCSMARGWRKAINENLGGVASCTHLRELLFNMATAAFQSVPGVFGDADPSQPPRHLGQCLGWDFNGPGVARYYPQFVGWQPGTGGATPIPASTATTATTETQGA</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="75" xmlns="http://uniprot.org/uniprot">
    <accession>A9BMI6</accession>
    <name>A9BMI6_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Nucleoid-associated protein Daci_4902</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Daci_4902</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="4" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="1">Binds to DNA and alters its conformation. May be involved in regulation of gene expression, nucleoid organization and DNA protection.</text>
    </comment>
    <comment type="subunit">
        <text evidence="1">Homodimer.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Cytoplasm</location>
            <location evidence="1">Nucleoid</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="1">Belongs to the YbaB/EbfC family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX37531.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012206701.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_4902"/>
    <dbReference type="PRIDE" id="A9BMI6"/>
    <dbReference type="EnsemblBacteria" id="ABX37531">
        <property type="protein sequence ID" value="ABX37531"/>
        <property type="gene ID" value="Daci_4902"/>
    </dbReference>
    <dbReference type="GeneID" id="60689246"/>
    <dbReference type="KEGG" id="dac:Daci_4902"/>
    <dbReference type="eggNOG" id="COG0718">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_140930_0_0_4"/>
    <dbReference type="OMA" id="MGNMMKQ"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043590">
        <property type="term" value="C:bacterial nucleoid"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.1310.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00274">
        <property type="entry name" value="DNA_YbaB_EbfC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036894">
        <property type="entry name" value="YbaB-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004401">
        <property type="entry name" value="YbaB/EbfC"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33449">
        <property type="entry name" value="PTHR33449"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02575">
        <property type="entry name" value="YbaB_DNA_bd"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF004555">
        <property type="entry name" value="UCP004555"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF82607">
        <property type="entry name" value="SSF82607"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00103">
        <property type="entry name" value="DNA_YbaB_EbfC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="1" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="1" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="coiled-coil region" evidence="2">
        <location>
            <begin position="7"/>
            <end position="34"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00274"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ABX37531.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="110" mass="11810" checksum="FEB8AC1C59790FC9" modified="2008-01-15" version="1">MFNKGQLAGLMKQAQAMQDNLKKAQDELGNIEVEGESGAGLVKVVMTCKHDVKRITIDPSLLAEDKDMLEDLVAAAFNAAVRKAEETSNEKMGKLTAGMPGLPGGMKFPF</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="53" xmlns="http://uniprot.org/uniprot">
    <accession>A9BN78</accession>
    <name>A9BN78_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">PLDc_2 domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Daci_5144</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="4" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX37773.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012206943.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_5144"/>
    <dbReference type="EnsemblBacteria" id="ABX37773">
        <property type="protein sequence ID" value="ABX37773"/>
        <property type="gene ID" value="Daci_5144"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_5144"/>
    <dbReference type="eggNOG" id="COG1502">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_084490_1_0_4"/>
    <dbReference type="OMA" id="MGIFIDR"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025202">
        <property type="entry name" value="PLD-like_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13091">
        <property type="entry name" value="PLDc_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="PLDc_2" evidence="2">
        <location>
            <begin position="15"/>
            <end position="131"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="149"/>
            <end position="175"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF13091"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ABX37773.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="239" mass="27093" checksum="615D32498A1D0E99" modified="2008-01-15" version="1">MTKFLNTSATNYFLEELIKGATDRLILISPFLKLNDRMKELLADKNRLKIDVRIVYGKSELQPQEIEWLRGLTFVRTSFCKNLHAKCYLSETMCIITSLNLYEFSQVNNNEMGILIERAEDAQLYRDAYDEAQRIIRISDEVRISMERVSNPNQTSVEGSTDAADGEPATGGKLTSSKIAHKRGWKTAQLLERATTMGYLALDGDRHVLTAAGTQAGLEFVPKSRFGPYFLWPEDINLS</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="63" xmlns="http://uniprot.org/uniprot">
    <accession>A9BNP9</accession>
    <name>A9BNP9_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ordered locus">Daci_5315</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="5" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Periplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the UPF0065 (bug) family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX37944.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012207113.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_5315"/>
    <dbReference type="PRIDE" id="A9BNP9"/>
    <dbReference type="EnsemblBacteria" id="ABX37944">
        <property type="protein sequence ID" value="ABX37944"/>
        <property type="gene ID" value="Daci_5315"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_5315"/>
    <dbReference type="eggNOG" id="COG3181">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_045683_0_3_4"/>
    <dbReference type="OMA" id="PDFIENH"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0042597">
        <property type="term" value="C:periplasmic space"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.190.150">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005064">
        <property type="entry name" value="BUG"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR042100">
        <property type="entry name" value="Bug_dom1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006311">
        <property type="entry name" value="TAT_signal"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR42928">
        <property type="entry name" value="PTHR42928"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03401">
        <property type="entry name" value="TctC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF017082">
        <property type="entry name" value="YflP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51318">
        <property type="entry name" value="TAT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="3">
        <location>
            <begin position="1"/>
            <end position="34"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5002732945" evidence="3">
        <location>
            <begin position="35"/>
            <end position="332"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004418"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00006987"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="ABX37944.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="332" mass="35182" checksum="B559B3318925D39E" modified="2008-01-15" version="1">MTSSRRQLLTGALRAAGAVTAVAASSALAPLAWAQPGQVIRILVGFPPGGGTDAIARLLADRLKDVLGTTVLVDNRPGAGGQIAAQQLKAAAADGHTLFLTHDHTISILPQVVKKPGFDPGHDFVPVAGFATFVNALAVSANTPARNLAEYVEWVRQGAKRGSIGIPAPASTPEFLVRLLGEHYRLDLVAAPYRGSAPMLADMLGNQIPAGIASVQDFMENHKAGKLRVIGVLGTRRQATMPEVPTLAEQGVKGFEDTPYYGIYAPRGTPQAFIDRFSAAVATVLKQPDVHEQLTALGLTVGHMPPAQLAEREQAYTQVWKRIIQTSGFQPQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-05-25" version="87" xmlns="http://uniprot.org/uniprot">
    <accession>A9BNQ6</accession>
    <name>A9BNQ6_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Two component transcriptional regulator, LuxR family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ordered locus">Daci_5322</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="6" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX37951.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012207120.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_5322"/>
    <dbReference type="EnsemblBacteria" id="ABX37951">
        <property type="protein sequence ID" value="ABX37951"/>
        <property type="gene ID" value="Daci_5322"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_5322"/>
    <dbReference type="eggNOG" id="COG2197">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_000445_90_1_4"/>
    <dbReference type="OMA" id="EFEIFRL"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000160">
        <property type="term" value="P:phosphorelay signal transduction system"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006355">
        <property type="term" value="P:regulation of transcription, DNA-templated"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd06170">
        <property type="entry name" value="LuxR_C_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011006">
        <property type="entry name" value="CheY-like_superfamily"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016032">
        <property type="entry name" value="Sig_transdc_resp-reg_C-effctor"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001789">
        <property type="entry name" value="Sig_transdc_resp-reg_receiver"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000792">
        <property type="entry name" value="Tscrpt_reg_LuxR_C"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00196">
        <property type="entry name" value="GerE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00072">
        <property type="entry name" value="Response_reg"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00038">
        <property type="entry name" value="HTHLUXR"/>
    </dbReference>
    <dbReference type="SMART" id="SM00421">
        <property type="entry name" value="HTH_LUXR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00448">
        <property type="entry name" value="REC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46894">
        <property type="entry name" value="SSF46894"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52172">
        <property type="entry name" value="SSF52172"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50043">
        <property type="entry name" value="HTH_LUXR_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50110">
        <property type="entry name" value="RESPONSE_REGULATORY"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="2" id="KW-0597">Phosphoprotein</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Response regulatory" evidence="4">
        <location>
            <begin position="6"/>
            <end position="122"/>
        </location>
    </feature>
    <feature type="domain" description="HTH luxR-type" evidence="3">
        <location>
            <begin position="142"/>
            <end position="207"/>
        </location>
    </feature>
    <feature type="modified residue" description="4-aspartylphosphate" evidence="2">
        <location>
            <position position="57"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00169"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="PROSITE" id="PS50043"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="PROSITE" id="PS50110"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="ABX37951.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="220" mass="24058" checksum="43B97302A9DB52EC" modified="2008-01-15" version="1">MNPMIRILLVDDHPLVRDGVSMRLQATDHIRVVGEAASVDQALPLARQLSPDLVVTDIRMPGASGIDLAALFRDQFPLVRVLVLSMHEDPEYVRRAVALGARGYVLKDAPAQQLIEAIDRVYAGGLYFSPGLQPVAEEDGSASGPRRALTPREASVLQWISEGRSNKEIAALMGTSVRTVETHRLHLRRKLRIDGHAAFIKYAVDYADLLGPAPQEARAG</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="55" xmlns="http://uniprot.org/uniprot">
    <accession>A9BNR9</accession>
    <name>A9BNR9_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Diguanylate cyclase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_5335</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX37964.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_5335"/>
    <dbReference type="PRIDE" id="A9BNR9"/>
    <dbReference type="EnsemblBacteria" id="ABX37964">
        <property type="protein sequence ID" value="ABX37964"/>
        <property type="gene ID" value="Daci_5335"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_5335"/>
    <dbReference type="eggNOG" id="COG2199">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_043530_0_0_4"/>
    <dbReference type="OMA" id="SRCMQEI"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="CDD" id="cd01949">
        <property type="entry name" value="GGDEF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.70.270">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000160">
        <property type="entry name" value="GGDEF_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029787">
        <property type="entry name" value="Nucleotide_cyclase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000014">
        <property type="entry name" value="PAS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035965">
        <property type="entry name" value="PAS-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043128">
        <property type="entry name" value="Rev_trsase/Diguanyl_cyclase"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00990">
        <property type="entry name" value="GGDEF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13188">
        <property type="entry name" value="PAS_8"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SMART" id="SM00267">
        <property type="entry name" value="GGDEF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55073">
        <property type="entry name" value="SSF55073"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55785">
        <property type="entry name" value="SSF55785"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00254">
        <property type="entry name" value="GGDEF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50887">
        <property type="entry name" value="GGDEF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="GGDEF" evidence="1">
        <location>
            <begin position="355"/>
            <end position="489"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS50887"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX37964.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="489" mass="55127" checksum="024A542BC696AC23" modified="2008-01-15" version="1">MESLIASSVDFEHMFELAPVSLWLEDYSALKQLLDQWRAQGVTDLQAHFLAHPQALQQCSAALKVVRVNQRTLDLFGASDQQTFLASLGRVFRDDMHAGLACELEDLWQGSLSFANRTANYTLDGRRLDVQIRGRILPGHEALWDCVLVSLEDVTAEMRSARQLHRSEQYSRDLFEYSPVSLWVEDFSAIKRLLDDVRAQGISDFATFLKVHPEFVSRCMQEIRVVDVNRQTLRMFGATDKLQLLSRLGRIFRDEMIDSFADQLQDLWSGKLVQHREVVNYALSGDALHIHMQLAVLDGHADDWGLVLLSLVDITARKKAEAYLEYLGKHDVLTQLRNRAFYIEELNRLARKGPWPLAVIAIDMNGLKEANDEHGHAAGDDMLRRVGEVLTKAVDAPACAARIGGDEFMVLLPASDERGAEAVKERILSLLELNNQFYPGQAVSLSMGVACCDSGSQVEATVSRADQAMYAEKARYYKERMLDRRAGRA</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-05-25" version="61" xmlns="http://uniprot.org/uniprot">
    <accession>A9BNT2</accession>
    <name>A9BNT2_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="7">Phosphate transporter</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ordered locus">Daci_5348</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="8" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX37977.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012207146.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_5348"/>
    <dbReference type="EnsemblBacteria" id="ABX37977">
        <property type="protein sequence ID" value="ABX37977"/>
        <property type="gene ID" value="Daci_5348"/>
    </dbReference>
    <dbReference type="GeneID" id="60689696"/>
    <dbReference type="KEGG" id="dac:Daci_5348"/>
    <dbReference type="eggNOG" id="COG0306">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_015355_1_1_4"/>
    <dbReference type="OMA" id="RANPHKA"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005315">
        <property type="term" value="F:inorganic phosphate transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006817">
        <property type="term" value="P:phosphate ion transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001204">
        <property type="entry name" value="Phos_transporter"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11101">
        <property type="entry name" value="PTHR11101"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01384">
        <property type="entry name" value="PHO4"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="5 6" id="KW-0472">Membrane</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 6" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="4 6" id="KW-1133">Transmembrane helix</keyword>
    <keyword evidence="2" id="KW-0813">Transport</keyword>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="6"/>
            <end position="27"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="48"/>
            <end position="72"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="84"/>
            <end position="105"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="112"/>
            <end position="136"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="142"/>
            <end position="164"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="199"/>
            <end position="216"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="222"/>
            <end position="244"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="265"/>
            <end position="291"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="311"/>
            <end position="331"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022448"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="ABX37977.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="336" mass="35261" checksum="7BD745DCAE5BB8B9" modified="2008-01-15" version="1">MESVQAALWVVILLVVLALLFDFMNGFHDAANSIATVVSTGVLKPTQAVAFAAFFNVVAVFVFHLSVAATVGKGIVQPGIVDTHVVFGALVGAIAWNVITWHYGIPSSSSHALIGGIVGAVIAKAGAGALIASGIWKTVAFIFVSPLLGYLLGSLMMVLVAWICRRAAPNRVDRWFRRLQLVSAGAYSLGHGGNDAQKTIGIIWLLLIATGYANAGDAEPPLWTIVSCYLAIGLGTMFGGWRIVKTMGQKITKLKPVGGFCAESGGALTLFFATFLGVPVSTTHTITGAIVGVGSTQRASAVRWGVAGNIVWAWVLTIPASAFVASIAYWISLQLY</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="80" xmlns="http://uniprot.org/uniprot">
    <accession>A9BNY3</accession>
    <name>A9BNY3_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ordered locus">Daci_5399</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="6" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX38028.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012207197.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_5399"/>
    <dbReference type="PRIDE" id="A9BNY3"/>
    <dbReference type="EnsemblBacteria" id="ABX38028">
        <property type="protein sequence ID" value="ABX38028"/>
        <property type="gene ID" value="Daci_5399"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_5399"/>
    <dbReference type="eggNOG" id="COG0840">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_000445_107_26_4"/>
    <dbReference type="OMA" id="NMQTIES"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016020">
        <property type="term" value="C:membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0007165">
        <property type="term" value="P:signal transduction"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd00130">
        <property type="entry name" value="PAS"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004089">
        <property type="entry name" value="MCPsignal_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001610">
        <property type="entry name" value="PAC"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000014">
        <property type="entry name" value="PAS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000700">
        <property type="entry name" value="PAS-assoc_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035965">
        <property type="entry name" value="PAS-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013656">
        <property type="entry name" value="PAS_4"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00015">
        <property type="entry name" value="MCPsignal"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08448">
        <property type="entry name" value="PAS_4"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SMART" id="SM00283">
        <property type="entry name" value="MA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00086">
        <property type="entry name" value="PAC"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SMART" id="SM00091">
        <property type="entry name" value="PAS"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55785">
        <property type="entry name" value="SSF55785"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00229">
        <property type="entry name" value="sensory_box"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50111">
        <property type="entry name" value="CHEMOTAXIS_TRANSDUC_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50113">
        <property type="entry name" value="PAC"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50112">
        <property type="entry name" value="PAS"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0807">Transducer</keyword>
    <feature type="domain" description="PAS" evidence="3">
        <location>
            <begin position="34"/>
            <end position="64"/>
        </location>
    </feature>
    <feature type="domain" description="PAC" evidence="4">
        <location>
            <begin position="93"/>
            <end position="145"/>
        </location>
    </feature>
    <feature type="domain" description="PAS" evidence="3">
        <location>
            <begin position="156"/>
            <end position="197"/>
        </location>
    </feature>
    <feature type="domain" description="PAC" evidence="4">
        <location>
            <begin position="213"/>
            <end position="267"/>
        </location>
    </feature>
    <feature type="domain" description="Methyl-accepting transducer" evidence="2">
        <location>
            <begin position="261"/>
            <end position="451"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00284"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS50111"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="PROSITE" id="PS50112"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="PROSITE" id="PS50113"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="ABX38028.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="488" mass="53138" checksum="5CBE07A4A89471C6" modified="2008-01-15" version="1">MKRSAWSRILDLGGAGRQAELDGQLAAIHKSQAVIEFDLQGHVLAANQNFLDTMGYEEGEVIGQHHRMFVDHQMSESPEYAAFWQRLGNGIHDAGRYRRIAKDGRDVWLQASYNPIFDRHGRPFKVVKYATDITEQQRRNADAEGQLAAISKVQAIIEFDLQGNILHANRLFLQAMGYTLDEVVGRHHSMFVQPHERHSPEYAQFWRKLASGQHDAGQYLRIGKHGRQVWIEASYNPILDADGRPFKVVKYARDITRRFTAAQTLGEAMQGLSESAEHAGQANELARQACLVAEQGGRTVHEVMGTMESISASSRKISDIIGVMDGIAFQTNILALNAAVEAARAGEQGRGFAVVAGEVRALAQNSAAAAKEIKQLIHTSVEQVALGANQVRQAGGTMQEIVDSSHQVTAIMGDVVQASMAQSARLREVTADLTAQSAAVADASREQVQRKPLPASIVPAAPQIKSAPAAAVLPAGAQRLPGTLLRMA</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="83" xmlns="http://uniprot.org/uniprot">
    <accession>A9BP51</accession>
    <name>A9BP51_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="2 7">sn-glycerol-3-phosphate transport system permease protein UgpE</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="7" type="primary">ugpE</name>
        <name evidence="9" type="ordered locus">Daci_5467</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="9 10" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="10" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="7">Part of the binding-protein-dependent transport system for sn-glycerol-3-phosphate; probably responsible for the translocation of the substrate across the membrane.</text>
    </comment>
    <comment type="subunit">
        <text evidence="1 7">The complex is composed of two ATP-binding proteins (UgpC), two transmembrane proteins (UgpA and UgpE) and a solute-binding protein (UgpB).</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="7">Cell inner membrane</location>
            <topology evidence="7">Multi-pass membrane protein</topology>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="6">Cell membrane</location>
            <topology evidence="6">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="6">Belongs to the binding-protein-dependent transport system permease family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX38096.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012207265.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_5467"/>
    <dbReference type="PRIDE" id="A9BP51"/>
    <dbReference type="EnsemblBacteria" id="ABX38096">
        <property type="protein sequence ID" value="ABX38096"/>
        <property type="gene ID" value="Daci_5467"/>
    </dbReference>
    <dbReference type="GeneID" id="60689818"/>
    <dbReference type="KEGG" id="dac:Daci_5467"/>
    <dbReference type="eggNOG" id="COG0395">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_016047_1_1_4"/>
    <dbReference type="OMA" id="IAFFIAW"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0055052">
        <property type="term" value="C:ATP-binding cassette (ABC) transporter complex, substrate-binding subunit-containing"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005887">
        <property type="term" value="C:integral component of plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015794">
        <property type="term" value="P:glycerol-3-phosphate transmembrane transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0001407">
        <property type="term" value="P:glycerophosphodiester transmembrane transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd06261">
        <property type="entry name" value="TM_PBP2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.3720.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000515">
        <property type="entry name" value="MetI-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035906">
        <property type="entry name" value="MetI-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR030165">
        <property type="entry name" value="UgpE"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43744:SF8">
        <property type="entry name" value="PTHR43744:SF8"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00528">
        <property type="entry name" value="BPD_transp_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF161098">
        <property type="entry name" value="SSF161098"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50928">
        <property type="entry name" value="ABC_TM1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="7" id="KW-0997">Cell inner membrane</keyword>
    <keyword evidence="7" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="5 6" id="KW-0472">Membrane</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 6" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="4 6" id="KW-1133">Transmembrane helix</keyword>
    <keyword evidence="6" id="KW-0813">Transport</keyword>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="7"/>
            <end position="31"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="78"/>
            <end position="106"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="113"/>
            <end position="131"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="143"/>
            <end position="163"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="192"/>
            <end position="211"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="248"/>
            <end position="269"/>
        </location>
    </feature>
    <feature type="domain" description="ABC transmembrane type-1" evidence="8">
        <location>
            <begin position="78"/>
            <end position="269"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00011557"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00020515"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="RuleBase" id="RU363032"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="RuleBase" id="RU363056"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="PROSITE" id="PS50928"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="ABX38096.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="282" mass="31123" checksum="A86F24FAB02442FC" modified="2008-01-15" version="1">MVERSPLLSFFSHLIMVLGVIIVGFPLYLAFVASTHTPQDIIQVPMPLVPGSNFWETYKAALFGGSGPGSSAPVARMMWISFVSAMVITVGKIAISLLSAFALVYFRFPFKKICFWLIFVTLMLPVEVRIGPTYEVVSTLGMLNSYAGLTIPLIASATATFLFRQFFLTVPDELVEAARIDGAGPMRFFKDVLVPLSKTSIAALFVIQFIYGWNQYLWPLLVTTSEDMYPVVIGIKRMVASGDTGNDWNVVMATALLAMLPPAAVVILMQRWFVKGLVDTEK</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="58" xmlns="http://uniprot.org/uniprot">
    <accession>A9BP56</accession>
    <name>A9BP56_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ordered locus">Daci_5472</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="5" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Periplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the UPF0065 (bug) family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX38101.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012207270.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_5472"/>
    <dbReference type="PRIDE" id="A9BP56"/>
    <dbReference type="EnsemblBacteria" id="ABX38101">
        <property type="protein sequence ID" value="ABX38101"/>
        <property type="gene ID" value="Daci_5472"/>
    </dbReference>
    <dbReference type="GeneID" id="60689823"/>
    <dbReference type="KEGG" id="dac:Daci_5472"/>
    <dbReference type="eggNOG" id="COG3181">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_045683_0_0_4"/>
    <dbReference type="OMA" id="KEMGDGG"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0042597">
        <property type="term" value="C:periplasmic space"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.190.150">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005064">
        <property type="entry name" value="BUG"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR042100">
        <property type="entry name" value="Bug_dom1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006311">
        <property type="entry name" value="TAT_signal"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR42928">
        <property type="entry name" value="PTHR42928"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03401">
        <property type="entry name" value="TctC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF017082">
        <property type="entry name" value="YflP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51318">
        <property type="entry name" value="TAT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="3">
        <location>
            <begin position="1"/>
            <end position="26"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5002734943" evidence="3">
        <location>
            <begin position="27"/>
            <end position="330"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004418"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00006987"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="ABX38101.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="330" mass="34484" checksum="DB2D7B11179B79CA" modified="2008-01-15" version="1">MAMRRTLLSSLAACAATALLAPVAWAQGPAADYPSRPIRLVVPFGAGGSTDMVARLLAEKMSVILGKSVVVDNRGGAGGSIGASEIARAAADGYTIGMATVSTHGSNPAIFRKLPYDPIKDFAPITNVMSVPSVFVINASVPAKTMKEFIALAKANPGKYSFASPGTGSLGHANIENFMNLAGIDLLHIPYKGAGQAITDALGGQVNAMTDNLPSTLPHIKDGKLRPLAVLAFKRADVLPDVPTYTELGFPQMGDGGWFGLVAPAGTPRPIIDKLNAAAHKAMAMPDYLEKQKSISGESMGNTPEEFAKQIKAAIERYTAVAKRANIKLD</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="101" xmlns="http://uniprot.org/uniprot">
    <accession>A9BP80</accession>
    <name>A9BP80_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="7">Arginine biosynthesis bifunctional protein ArgJ</fullName>
        </recommendedName>
        <domain>
            <recommendedName>
                <fullName evidence="7">Glutamate N-acetyltransferase</fullName>
                <ecNumber evidence="7">2.3.1.35</ecNumber>
            </recommendedName>
            <alternativeName>
                <fullName evidence="7">Ornithine acetyltransferase</fullName>
                <shortName evidence="7">OATase</shortName>
            </alternativeName>
            <alternativeName>
                <fullName evidence="7">Ornithine transacetylase</fullName>
            </alternativeName>
        </domain>
        <domain>
            <recommendedName>
                <fullName evidence="7">Amino-acid acetyltransferase</fullName>
                <ecNumber evidence="7">2.3.1.1</ecNumber>
            </recommendedName>
            <alternativeName>
                <fullName evidence="7">N-acetylglutamate synthase</fullName>
                <shortName evidence="7">AGSase</shortName>
            </alternativeName>
        </domain>
        <component>
            <recommendedName>
                <fullName evidence="7">Arginine biosynthesis bifunctional protein ArgJ alpha chain</fullName>
            </recommendedName>
        </component>
        <component>
            <recommendedName>
                <fullName evidence="7">Arginine biosynthesis bifunctional protein ArgJ beta chain</fullName>
            </recommendedName>
        </component>
    </protein>
    <gene>
        <name evidence="7" type="primary">argJ</name>
        <name evidence="8" type="ordered locus">Daci_5496</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="9" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="7">Catalyzes two activities which are involved in the cyclic version of arginine biosynthesis: the synthesis of N-acetylglutamate from glutamate and acetyl-CoA as the acetyl donor, and of ornithine by transacetylation between N(2)-acetylornithine and glutamate.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1 7">
            <text>L-glutamate + N(2)-acetyl-L-ornithine = L-ornithine + N-acetyl-L-glutamate</text>
            <dbReference type="Rhea" id="RHEA:15349"/>
            <dbReference type="ChEBI" id="CHEBI:29985"/>
            <dbReference type="ChEBI" id="CHEBI:44337"/>
            <dbReference type="ChEBI" id="CHEBI:46911"/>
            <dbReference type="ChEBI" id="CHEBI:57805"/>
            <dbReference type="EC" id="2.3.1.35"/>
        </reaction>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="7">
            <text>acetyl-CoA + L-glutamate = CoA + H(+) + N-acetyl-L-glutamate</text>
            <dbReference type="Rhea" id="RHEA:24292"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:29985"/>
            <dbReference type="ChEBI" id="CHEBI:44337"/>
            <dbReference type="ChEBI" id="CHEBI:57287"/>
            <dbReference type="ChEBI" id="CHEBI:57288"/>
            <dbReference type="EC" id="2.3.1.1"/>
        </reaction>
    </comment>
    <comment type="pathway">
        <text evidence="7">Amino-acid biosynthesis; L-arginine biosynthesis; L-ornithine and N-acetyl-L-glutamate from L-glutamate and N(2)-acetyl-L-ornithine (cyclic): step 1/1.</text>
    </comment>
    <comment type="pathway">
        <text evidence="7">Amino-acid biosynthesis; L-arginine biosynthesis; N(2)-acetyl-L-ornithine from L-glutamate: step 1/4.</text>
    </comment>
    <comment type="subunit">
        <text evidence="3 7">Heterotetramer of two alpha and two beta chains.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="7">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="miscellaneous">
        <text evidence="7">Some bacteria possess a monofunctional ArgJ, i.e., capable of catalyzing only the fifth step of the arginine biosynthetic pathway.</text>
    </comment>
    <comment type="similarity">
        <text evidence="2 7">Belongs to the ArgJ family.</text>
    </comment>
    <dbReference type="EC" id="2.3.1.35" evidence="7"/>
    <dbReference type="EC" id="2.3.1.1" evidence="7"/>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX38125.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012207294.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_5496"/>
    <dbReference type="MEROPS" id="T05.001"/>
    <dbReference type="PRIDE" id="A9BP80"/>
    <dbReference type="EnsemblBacteria" id="ABX38125">
        <property type="protein sequence ID" value="ABX38125"/>
        <property type="gene ID" value="Daci_5496"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_5496"/>
    <dbReference type="eggNOG" id="COG1364">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_027172_1_0_4"/>
    <dbReference type="OMA" id="DYVHENS"/>
    <dbReference type="UniPathway" id="UPA00068">
        <property type="reaction ID" value="UER00106"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004042">
        <property type="term" value="F:acetyl-CoA:L-glutamate N-acetyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004358">
        <property type="term" value="F:glutamate N-acetyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0103045">
        <property type="term" value="F:methione N-acyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006526">
        <property type="term" value="P:arginine biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd02152">
        <property type="entry name" value="OAT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.10.20.340">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01106">
        <property type="entry name" value="ArgJ"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002813">
        <property type="entry name" value="Arg_biosynth_ArgJ"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016117">
        <property type="entry name" value="ArgJ-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR042195">
        <property type="entry name" value="ArgJ_beta_C"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR23100">
        <property type="entry name" value="PTHR23100"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01960">
        <property type="entry name" value="ArgJ"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56266">
        <property type="entry name" value="SSF56266"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00120">
        <property type="entry name" value="ArgJ"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="6 7 8" id="KW-0012">Acyltransferase</keyword>
    <keyword evidence="7" id="KW-0028">Amino-acid biosynthesis</keyword>
    <keyword evidence="7" id="KW-0055">Arginine biosynthesis</keyword>
    <keyword evidence="5 7" id="KW-0068">Autocatalytic cleavage</keyword>
    <keyword evidence="7" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="7" id="KW-0511">Multifunctional enzyme</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4 7 8" id="KW-0808">Transferase</keyword>
    <feature type="chain" id="PRO_5023538326" description="Arginine biosynthesis bifunctional protein ArgJ alpha chain" evidence="7">
        <location>
            <begin position="1"/>
            <end position="193"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5023538325" description="Arginine biosynthesis bifunctional protein ArgJ beta chain" evidence="7">
        <location>
            <begin position="194"/>
            <end position="410"/>
        </location>
    </feature>
    <feature type="active site" description="Nucleophile" evidence="7">
        <location>
            <position position="194"/>
        </location>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <position position="157"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <position position="183"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <position position="194"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <position position="281"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <position position="405"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <position position="410"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="site" description="Involved in the stabilization of negative charge on the oxyanion by the formation of the oxyanion hole" evidence="7">
        <location>
            <position position="120"/>
        </location>
    </feature>
    <feature type="site" description="Involved in the stabilization of negative charge on the oxyanion by the formation of the oxyanion hole" evidence="7">
        <location>
            <position position="121"/>
        </location>
    </feature>
    <feature type="site" description="Cleavage; by autolysis" evidence="7">
        <location>
            <begin position="193"/>
            <end position="194"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00000498"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00006774"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00011475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022813"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023315"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01106"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="ABX38125.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="410" mass="43228" checksum="67BB5C133BAD7215" modified="2008-01-15" version="1">MPVNLSAPVHADLLAINGVRIGVTEAGVRKANRKDLSVFLLDEGASVAGVFTQNRFCAAPVQVSREHLVQTAGAIRAMVINTGNANAGTGADGLARARRTCADLAALLQLKPEQILPFSTGVIMEELPVDRIAAGLPAAIAAAKADNWGTAAEGIMTTDTLPKAFSRAVDIGGKRVSITGISKGAGMIRPNMATMLGFLATDAAIAPELLQPLVKELADGSFNRVTIDGDTSTNDSFVLVATHKAGNAQITSLTSAEGQALKAALLDVSRLLAQAIVRDGEGATKFITIKVEGGKTEVECRLVAYSIAHSPLVKTAFFASDPNLGRILAAVGYASIDDLDQTKIDLYLNDVHVAVNGGRNPAYQEEDGQRVMKQQEIIVRVLLGRGEAEQTVWTCDLSHDYVSINADYRS</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="55" xmlns="http://uniprot.org/uniprot">
    <accession>A9BP96</accession>
    <name>A9BP96_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">MaoC domain protein dehydratase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_0013</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX32660.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012201953.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_0013"/>
    <dbReference type="PRIDE" id="A9BP96"/>
    <dbReference type="EnsemblBacteria" id="ABX32660">
        <property type="protein sequence ID" value="ABX32660"/>
        <property type="gene ID" value="Daci_0013"/>
    </dbReference>
    <dbReference type="GeneID" id="60690425"/>
    <dbReference type="KEGG" id="dac:Daci_0013"/>
    <dbReference type="eggNOG" id="COG2030">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_094876_0_0_4"/>
    <dbReference type="OMA" id="CRAHGMP"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029069">
        <property type="entry name" value="HotDog_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002539">
        <property type="entry name" value="MaoC-like_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01575">
        <property type="entry name" value="MaoC_dehydratas"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54637">
        <property type="entry name" value="SSF54637"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="MaoC-like" evidence="1">
        <location>
            <begin position="19"/>
            <end position="131"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF01575"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX32660.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="154" mass="17112" checksum="084A36F73D1276AD" modified="2008-01-15" version="1">MPRHPSLCAQRYFEDFALGEVFALPSRTMTDALFAAFQLASGDNHPVHYDVEYCRARGMPHMLAHGYQVAIQTAAGAGLFPHMVEESLKGFLEQGSRFLAPVYVGDTLYCTLTVSELKPGNTTGVLTLATEVLNQRDERVSDGFQKYLLRKRPA</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="68" xmlns="http://uniprot.org/uniprot">
    <accession>A9BPB3</accession>
    <name>A9BPB3_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="7">Inner-membrane translocator</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ordered locus">Daci_0030</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="8" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX32677.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012201970.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_0030"/>
    <dbReference type="PRIDE" id="A9BPB3"/>
    <dbReference type="EnsemblBacteria" id="ABX32677">
        <property type="protein sequence ID" value="ABX32677"/>
        <property type="gene ID" value="Daci_0030"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_0030"/>
    <dbReference type="eggNOG" id="COG4177">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_031365_2_1_4"/>
    <dbReference type="OMA" id="HLWPFRN"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015658">
        <property type="term" value="F:branched-chain amino acid transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd06581">
        <property type="entry name" value="TM_PBP1_LivM_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001851">
        <property type="entry name" value="ABC_transp_permease"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043428">
        <property type="entry name" value="LivM-like"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30482">
        <property type="entry name" value="PTHR30482"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02653">
        <property type="entry name" value="BPD_transp_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="5 6" id="KW-0472">Membrane</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 6" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="4 6" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="21"/>
            <end position="38"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="44"/>
            <end position="64"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="71"/>
            <end position="91"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="97"/>
            <end position="117"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="124"/>
            <end position="142"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="172"/>
            <end position="191"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="221"/>
            <end position="241"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="253"/>
            <end position="279"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="300"/>
            <end position="322"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="ABX32677.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="345" mass="37439" checksum="CE1437938BC8F8F6" modified="2008-01-15" version="1">MRIGTLKESYIADAALYDSRTQRIWLAMAGALLLLFPFMASDYWLYLACLVSINVAGATGLNILTGYTGLVSLGQAAFMGLGAYTVAIVQARWGTPVLFNLLAGGFVAMLGGIVVGLPSLRVKGLYLAIATIAASFIAHFLFANLRLTGGTAGLTLQPATVFGVALDTSFRLYWVIVPVTLLMLLGAANLFRTRIGRAFIAIRDRDISAEVLGIPLLRYKLLSFGLSSFYAGVAGGLWAYFFRVVTPESFPLLMSIFFLAAIIVGGMGSILGGILGAVFMTMVPELLKLIVDLLPGGSELAVFLSPVRTMVFGLLIIVFLVFEPQGLAQMWRRLRRFFHLWPFRN</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="57" xmlns="http://uniprot.org/uniprot">
    <accession>A9BQ00</accession>
    <name>A9BQ00_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Phenylacetic acid degradation protein PaaD</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_0569</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX33215.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012202501.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_0569"/>
    <dbReference type="PRIDE" id="A9BQ00"/>
    <dbReference type="EnsemblBacteria" id="ABX33215">
        <property type="protein sequence ID" value="ABX33215"/>
        <property type="gene ID" value="Daci_0569"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_0569"/>
    <dbReference type="eggNOG" id="COG2050">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_089876_11_0_4"/>
    <dbReference type="OMA" id="FACNSHN"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016790">
        <property type="term" value="F:thiolester hydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029069">
        <property type="entry name" value="HotDog_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011973">
        <property type="entry name" value="PaaD"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003736">
        <property type="entry name" value="PAAI_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006683">
        <property type="entry name" value="Thioestr_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03061">
        <property type="entry name" value="4HBT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54637">
        <property type="entry name" value="SSF54637"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR02286">
        <property type="entry name" value="PaaD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00369">
        <property type="entry name" value="unchar_dom_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="4HBT" evidence="1">
        <location>
            <begin position="60"/>
            <end position="132"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF03061"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX33215.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="155" mass="16645" checksum="A34DF727E8FE1512" modified="2008-01-15" version="1">MQDTHTPDEAAQRLAEQVRDGMLARDRAAQGLGLRITDIAPGAARMEMAVRDDMLNGFDICHGGFITALADTAFAYACNARNEMTVASGLSVDFVAPGRPGDVLTAQAREISRAGRTGVYDVQVTNQRQEVIALFRGRSHSFKGRPTVPGLTEPA</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="65" xmlns="http://uniprot.org/uniprot">
    <accession>A9BQ31</accession>
    <name>A9BQ31_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Type III secretion exporter</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ordered locus">Daci_0600</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="5" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the type III secretion exporter family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX33246.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012202532.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_0600"/>
    <dbReference type="MEROPS" id="N06.A01"/>
    <dbReference type="PRIDE" id="A9BQ31"/>
    <dbReference type="EnsemblBacteria" id="ABX33246">
        <property type="protein sequence ID" value="ABX33246"/>
        <property type="gene ID" value="Daci_0600"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_0600"/>
    <dbReference type="eggNOG" id="COG1377">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_041013_1_0_4"/>
    <dbReference type="OMA" id="DEYKQQE"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009306">
        <property type="term" value="P:protein secretion"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.1690.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006135">
        <property type="entry name" value="T3SS_substrate_exporter"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029025">
        <property type="entry name" value="T3SS_substrate_exporter_C"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30531">
        <property type="entry name" value="PTHR30531"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01312">
        <property type="entry name" value="Bac_export_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00950">
        <property type="entry name" value="TYPE3IMSPROT"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF160544">
        <property type="entry name" value="SSF160544"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-0472">Membrane</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="3" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="3">
        <location>
            <begin position="86"/>
            <end position="114"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="3">
        <location>
            <begin position="141"/>
            <end position="162"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="3">
        <location>
            <begin position="194"/>
            <end position="214"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="1"/>
            <end position="27"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="357"/>
            <end position="391"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00010690"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="ABX33246.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="391" mass="42006" checksum="B51CFE6D5C4C0476" modified="2008-01-15" version="1">MDSSQDKSLPATERKLQKTRSDGQGARSRDLSHLAILGTGALMMLMGAEPLIQHLRMALAQQLAFDAHTAKTPALMMERMLSMGSLGLKISLVVAAVTTGAALVSGMLAGGWILSLKPIQPQFNRLNPLSGLTNLFSKQQMVTVVKMVVMTAILSFVAWKFLSSHLAEIAAISSQPSAMALSMTGQWLASGVALLLLVVFLMAVIDVPLQAYLFKSRLKMSHEEVKQEHKESDGNPQIKSKIRQKQREIADRASVNAVPRADFVVTNPTHYAVALRYDEKTMAAPQVISKGTDLVALKIREVAGAHKIPVLESPMLARALYAHADLDQAIPAALYTAVAQVLAYVYRLKAALRGEGPMPGDLGEPVVPAELDPHQGRRAPGAAATTEGTAP</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-01-19" version="51" xmlns="http://uniprot.org/uniprot">
    <accession>A9BQ38</accession>
    <name>A9BQ38_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Daci_0607</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="2" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX33253.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_0607"/>
    <dbReference type="EnsemblBacteria" id="ABX33253">
        <property type="protein sequence ID" value="ABX33253"/>
        <property type="gene ID" value="Daci_0607"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_0607"/>
    <dbReference type="eggNOG" id="COG1044">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_1325934_0_0_4"/>
    <dbReference type="OMA" id="NIGANTW"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001451">
        <property type="entry name" value="Hexapep"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011004">
        <property type="entry name" value="Trimer_LpxA-like_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00132">
        <property type="entry name" value="Hexapep"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51161">
        <property type="entry name" value="SSF51161"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ABX33253.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="194" mass="21489" checksum="E2EFACA25D723210" modified="2008-01-15" version="1">MEIAFNAWKQAYPEIIIEKIEVPQAQDYSFELGSLDNLDPREGTAFVAFDERFGNFKRVELMQSALDRGFKLESFISPRSMLSSNIRIGPNTFIGDGVVIGHGSRIDYNSVLLSGTQIGSSVHIRSSCWLESGTIVGNSAQIGAHSILRSGAIIAGNVNIGRGCELGWPQRYDKDIDARTFFDPRYDSPIYVYG</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="80" xmlns="http://uniprot.org/uniprot">
    <accession>A9BQ49</accession>
    <name>A9BQ49_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">Flagellin</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="6" type="ordered locus">Daci_0618</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="7" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="3">Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="3">Secreted</location>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="3">Bacterial flagellum</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="1 3">Belongs to the bacterial flagellin family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX33264.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012202550.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_0618"/>
    <dbReference type="PRIDE" id="A9BQ49"/>
    <dbReference type="EnsemblBacteria" id="ABX33264">
        <property type="protein sequence ID" value="ABX33264"/>
        <property type="gene ID" value="Daci_0618"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_0618"/>
    <dbReference type="eggNOG" id="COG1344">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_011142_2_2_4"/>
    <dbReference type="OMA" id="FEHTINN"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009288">
        <property type="term" value="C:bacterial-type flagellum"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005576">
        <property type="term" value="C:extracellular region"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005198">
        <property type="term" value="F:structural molecule activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="6.10.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001492">
        <property type="entry name" value="Flagellin"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR046358">
        <property type="entry name" value="Flagellin_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR042187">
        <property type="entry name" value="Flagellin_C_sub2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001029">
        <property type="entry name" value="Flagellin_N"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR42792">
        <property type="entry name" value="PTHR42792"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00700">
        <property type="entry name" value="Flagellin_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00669">
        <property type="entry name" value="Flagellin_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00207">
        <property type="entry name" value="FLAGELLIN"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2 3" id="KW-0975">Bacterial flagellum</keyword>
    <keyword evidence="6" id="KW-0966">Cell projection</keyword>
    <keyword evidence="6" id="KW-0969">Cilium</keyword>
    <keyword evidence="6" id="KW-0282">Flagellum</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0964">Secreted</keyword>
    <feature type="domain" description="Flagellin_N" evidence="4">
        <location>
            <begin position="5"/>
            <end position="142"/>
        </location>
    </feature>
    <feature type="domain" description="Flagellin_C" evidence="5">
        <location>
            <begin position="204"/>
            <end position="289"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00005709"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023143"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="RuleBase" id="RU362073"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="Pfam" id="PF00669"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="Pfam" id="PF00700"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="ABX33264.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="290" mass="30076" checksum="09CC9F5AB8B54264" modified="2008-01-15" version="1">MASIINTNLVSLNAQRNLSTSQSSLSTTMQRLSSGLRVNSAKDDAAGLAIAERMNAQVRGMNVAMRNANDGISMAQTAEGALGKLSDNLQRMRELAVQAANDTNGTTDRGSLDKEFQQLAQEIARIVGSTSFNGRQLLDNDNPTVFQVGANTGADNQITITAVNLTGASPGGLAITAGTPPTLGGALGSLLGAGSSAPDARLSMEAIDTALDLVNNTRATFGAAQNRFEAVISNLQVAAENTASARSRIMDADFAAETANLSRTQILQQAGTAMVAQANQLPQSVLKLIQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="48" xmlns="http://uniprot.org/uniprot">
    <accession>A9BQC8</accession>
    <name>A9BQC8_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">LprI domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Daci_0892</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="4" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX33538.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012202824.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_0892"/>
    <dbReference type="PRIDE" id="A9BQC8"/>
    <dbReference type="EnsemblBacteria" id="ABX33538">
        <property type="protein sequence ID" value="ABX33538"/>
        <property type="gene ID" value="Daci_0892"/>
    </dbReference>
    <dbReference type="GeneID" id="60685458"/>
    <dbReference type="KEGG" id="dac:Daci_0892"/>
    <dbReference type="eggNOG" id="COG3755">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_130893_0_0_4"/>
    <dbReference type="OMA" id="QAGMRDC"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009739">
        <property type="entry name" value="LprI_N"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07007">
        <property type="entry name" value="LprI"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="1">
        <location>
            <begin position="1"/>
            <end position="21"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5002735681" description="LprI domain-containing protein" evidence="1">
        <location>
            <begin position="22"/>
            <end position="147"/>
        </location>
    </feature>
    <feature type="domain" description="LprI" evidence="2">
        <location>
            <begin position="37"/>
            <end position="137"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF07007"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ABX33538.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="147" mass="15815" checksum="49CFB939A5C5D9CA" modified="2008-01-15" version="1">MRAKKLTTLALAACIPLWSLATEIIPQPDERALREECSAHSQAGMRDCLARRLADSHKALKQAEEQAASALGQWDEDAKYAAQAKARLSASGKEFTQYRDAQCSWLASLAGGAAGNATEIRRLSCAAALNFGRAAQLRDATSELPLK</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="69" xmlns="http://uniprot.org/uniprot">
    <accession>A9BQP3</accession>
    <name>A9BQP3_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase</fullName>
            <ecNumber evidence="2">4.1.2.20</ecNumber>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_0099</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EC" id="4.1.2.20" evidence="2"/>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX32745.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012202038.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_0099"/>
    <dbReference type="PRIDE" id="A9BQP3"/>
    <dbReference type="EnsemblBacteria" id="ABX32745">
        <property type="protein sequence ID" value="ABX32745"/>
        <property type="gene ID" value="Daci_0099"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_0099"/>
    <dbReference type="eggNOG" id="COG3836">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_059964_1_0_4"/>
    <dbReference type="OMA" id="MAKTAGF"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008672">
        <property type="term" value="F:2-dehydro-3-deoxyglucarate aldolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.20.20.60">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005000">
        <property type="entry name" value="Aldolase/citrate-lyase_domain"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015813">
        <property type="entry name" value="Pyrv/PenolPyrv_Kinase-like_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR040442">
        <property type="entry name" value="Pyrv_Kinase-like_dom_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03328">
        <property type="entry name" value="HpcH_HpaI"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51621">
        <property type="entry name" value="SSF51621"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0456">Lyase</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HpcH_HpaI" evidence="1">
        <location>
            <begin position="18"/>
            <end position="251"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF03328"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX32745.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="273" mass="28652" checksum="AEAEDDF1C39A3DBA" modified="2008-01-15" version="1">MQTPVNRFKAAIAADQPQIGLWLGLADAYSAEICAGAGFDWLLIDGEHSPNDTRTLLAQLQAIAAYPDSHAIARVPMGHGEVGEMLIKQYLDIGVQTLLVPMVDTAEQAARIVRAARYPQADGQGGIRGMGGARASAWGRRANYAHEANAQVCVLVQVETRQALAHLDAIAATEGVDGVFIGPADLSASMGHIGNPGHPEVQEAIADAIARIRRAGKAPGILTPNEALARKYLELGCTFTAVGLDTSVLVQATSALAARFKQAAAPAPKSQTY</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-01-19" version="62" xmlns="http://uniprot.org/uniprot">
    <accession>A9BQR8</accession>
    <name>A9BQR8_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Fimbrial protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Daci_0124</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="4" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX32770.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012202063.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_0124"/>
    <dbReference type="EnsemblBacteria" id="ABX32770">
        <property type="protein sequence ID" value="ABX32770"/>
        <property type="gene ID" value="Daci_0124"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_0124"/>
    <dbReference type="eggNOG" id="COG3539">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_058392_6_1_4"/>
    <dbReference type="OMA" id="NAQVWTT"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009289">
        <property type="term" value="C:pilus"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0007155">
        <property type="term" value="P:cell adhesion"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.40.1090">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000259">
        <property type="entry name" value="Adhesion_dom_fimbrial"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036937">
        <property type="entry name" value="Adhesion_dom_fimbrial_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008966">
        <property type="entry name" value="Adhesion_dom_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00419">
        <property type="entry name" value="Fimbrial"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF49401">
        <property type="entry name" value="SSF49401"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="1">
        <location>
            <begin position="1"/>
            <end position="28"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5002732425" evidence="1">
        <location>
            <begin position="29"/>
            <end position="334"/>
        </location>
    </feature>
    <feature type="domain" description="Fimbrial" evidence="2">
        <location>
            <begin position="178"/>
            <end position="334"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF00419"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ABX32770.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="334" mass="35224" checksum="F2925638D78AC053" modified="2008-01-15" version="1">MSFTAILRHGLATPLLLMFCMAPISSWARCSSQGWNAQFPGSANTPTIVNENYPIGSVVYSRTMALQNTGAGSYHISCDNDFYYIEGIGTESGGIYSTAIPSLGMRITWERAAPYSGSMLKQGIFHSLPSNNMTIELVKTGELTSGGSLNGSFARIYSGTSNARDLLATVFFSSGITVNVSSRPRPPTCRVSTGKIDVTMAPAPFADFKGIGSVTAAKDFSIELTCAGGEANTRLTAFITLTDATQATNRSSTLTLAQNSKARGVGIQVLRNNVPVSFGPDSGSLGNANQWNAGQVAQGQNSLKIPLSARLVQTAGSVTPGMAYGRATFTMSYQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="67" xmlns="http://uniprot.org/uniprot">
    <accession>A9BQV8</accession>
    <name>A9BQV8_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Transcriptional regulator, IclR family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ordered locus">Daci_0267</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="6" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX32913.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012202206.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_0267"/>
    <dbReference type="PRIDE" id="A9BQV8"/>
    <dbReference type="EnsemblBacteria" id="ABX32913">
        <property type="protein sequence ID" value="ABX32913"/>
        <property type="gene ID" value="Daci_0267"/>
    </dbReference>
    <dbReference type="GeneID" id="60690673"/>
    <dbReference type="KEGG" id="dac:Daci_0267"/>
    <dbReference type="eggNOG" id="COG1414">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_062618_0_0_4"/>
    <dbReference type="OMA" id="EDRHFVT"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006355">
        <property type="term" value="P:regulation of transcription, DNA-templated"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.450.40">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029016">
        <property type="entry name" value="GAF-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014757">
        <property type="entry name" value="Tscrpt_reg_IclR_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005471">
        <property type="entry name" value="Tscrpt_reg_IclR_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036390">
        <property type="entry name" value="WH_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF09339">
        <property type="entry name" value="HTH_IclR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00346">
        <property type="entry name" value="HTH_ICLR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46785">
        <property type="entry name" value="SSF46785"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51077">
        <property type="entry name" value="HTH_ICLR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51078">
        <property type="entry name" value="ICLR_ED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0804">Transcription</keyword>
    <keyword evidence="1" id="KW-0805">Transcription regulation</keyword>
    <feature type="domain" description="HTH iclR-type" evidence="3">
        <location>
            <begin position="19"/>
            <end position="81"/>
        </location>
    </feature>
    <feature type="domain" description="IclR-ED" evidence="4">
        <location>
            <begin position="82"/>
            <end position="267"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023015"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023163"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="PROSITE" id="PS51077"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="PROSITE" id="PS51078"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="ABX32913.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="268" mass="29294" checksum="EC03751D633E9729" modified="2008-01-15" version="1">MPPSRTPPPQPGDDDRNFIVALARGLDVLSCFRSGEKLLGNQDIARRCGLPRSTVSRLTHTLTTLGYLIHVPEEGKYRLGTATLALGSAMLSRLDVRQIARPLMQKLAATTDAEVALAARDRHNMVYIEHCPSARFTHRDLDMGSRIPLATTAVGRAWLAASPASERQRALDYLQSHAPEQWAAAQAQLPLWPGASTHPQPWLSCSFGDWQPEVNAIALAFSPGRGLPLMAVSLGGPSRFVTADALRQDGVPALQRMVRRLQQDIDRA</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="54" xmlns="http://uniprot.org/uniprot">
    <accession>A9BR08</accession>
    <name>A9BR08_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">zf-CHCC domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_0317</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX32963.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012202256.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_0317"/>
    <dbReference type="PRIDE" id="A9BR08"/>
    <dbReference type="EnsemblBacteria" id="ABX32963">
        <property type="protein sequence ID" value="ABX32963"/>
        <property type="gene ID" value="Daci_0317"/>
    </dbReference>
    <dbReference type="GeneID" id="60690721"/>
    <dbReference type="KEGG" id="dac:Daci_0317"/>
    <dbReference type="eggNOG" id="COG4391">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_083053_4_0_4"/>
    <dbReference type="OMA" id="RTGEAKC"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019401">
        <property type="entry name" value="Znf_CHCC"/>
    </dbReference>
    <dbReference type="Pfam" id="PF10276">
        <property type="entry name" value="zf-CHCC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="zf-CHCC" evidence="1">
        <location>
            <begin position="34"/>
            <end position="57"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF10276"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX32963.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="69" mass="7381" checksum="E228476DF1517E15" modified="2008-01-15" version="1">MTTNATVELAAKDLNAQGGVFCPSPKADMKLWNSHPKVYLDVAHTGEAKCPYCGTLYRLKAGEVFAGGH</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="53" xmlns="http://uniprot.org/uniprot">
    <accession>A9BR13</accession>
    <name>A9BR13_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Mannosyltransferase OCH1-related enzyme</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_0322</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX32968.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012202261.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_0322"/>
    <dbReference type="PRIDE" id="A9BR13"/>
    <dbReference type="EnsemblBacteria" id="ABX32968">
        <property type="protein sequence ID" value="ABX32968"/>
        <property type="gene ID" value="Daci_0322"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_0322"/>
    <dbReference type="eggNOG" id="COG3774">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_071032_0_0_4"/>
    <dbReference type="OMA" id="DWIRLEL"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016757">
        <property type="term" value="F:glycosyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008441">
        <property type="entry name" value="AfumC-like_glycosyl_Trfase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029044">
        <property type="entry name" value="Nucleotide-diphossugar_trans"/>
    </dbReference>
    <dbReference type="Pfam" id="PF05704">
        <property type="entry name" value="Caps_synth"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53448">
        <property type="entry name" value="SSF53448"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0328">Glycosyltransferase</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1 2" id="KW-0808">Transferase</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX32968.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="317" mass="36174" checksum="93A40BAAA2C4DD5F" modified="2008-01-15" version="1">MSGLKLKTRGELWLAAGMRRFYATFARRLEQGPAPDFRSHDIGPAAPVPVSTPIPRIIWAYWNGDSVPLLIQRCFDNWARLNPGYSLRILNDAQLPQYVPQLPGNLQQLPVAKRSDWLRLELLHRHGGIWLDASTILTEPLDWLLEQQQRSGADLVAYYLERYTRDPQVPVVENWLMAAPPGSAFIAALHKEYVEQVLPQTGEAYIAQLQQAGEYEQLRQGIDMPAYLSMHLAMQRVLRAGGSYRLRLAKAEDGPFFLHVQGNWGRTPLKIRLMFSRTEKAPVPLIKLRAPDRKKLDLYLERGLYVPGSIADRYLRG</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="49" xmlns="http://uniprot.org/uniprot">
    <accession>A9BRC2</accession>
    <name>A9BRC2_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Daci_0534</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="4" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX33180.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012202466.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_0534"/>
    <dbReference type="PRIDE" id="A9BRC2"/>
    <dbReference type="EnsemblBacteria" id="ABX33180">
        <property type="protein sequence ID" value="ABX33180"/>
        <property type="gene ID" value="Daci_0534"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_0534"/>
    <dbReference type="eggNOG" id="ENOG5032XPX">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_139747_0_0_4"/>
    <dbReference type="OMA" id="IGGHWEA"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR024447">
        <property type="entry name" value="YXWGXW_rpt"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12779">
        <property type="entry name" value="WXXGXW"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="2">
        <location>
            <begin position="1"/>
            <end position="24"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5002735710" evidence="2">
        <location>
            <begin position="25"/>
            <end position="129"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="96"/>
            <end position="129"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="104"/>
            <end position="129"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ABX33180.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="129" mass="14515" checksum="082F6A495DF27D34" modified="2008-01-15" version="1">MISLRTPLIAATLALAGWAGTAQAQANVTYAAPGAAISVQFGAPPPMRYEAVPAPRRGYVWAPGYWRPQGHRHAWVAGHWVKARPGYVYRQPVWSQHGGRWGYAPGRWDRDRDGVPDRHDRRPNNPYRH</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="61" xmlns="http://uniprot.org/uniprot">
    <accession>A9BRG1</accession>
    <name>A9BRG1_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Band 7 protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Daci_0676</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="4" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the band 7/mec-2 family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX33322.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012202608.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_0676"/>
    <dbReference type="PRIDE" id="A9BRG1"/>
    <dbReference type="EnsemblBacteria" id="ABX33322">
        <property type="protein sequence ID" value="ABX33322"/>
        <property type="gene ID" value="Daci_0676"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_0676"/>
    <dbReference type="eggNOG" id="COG0330">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_027197_1_1_4"/>
    <dbReference type="OMA" id="RLYWKGQ"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.479.30">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043202">
        <property type="entry name" value="Band-7_stomatin-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001107">
        <property type="entry name" value="Band_7"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036013">
        <property type="entry name" value="Band_7/SPFH_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001972">
        <property type="entry name" value="Stomatin_HflK_HflKC_fam"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10264">
        <property type="entry name" value="PTHR10264"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01145">
        <property type="entry name" value="Band_7"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00721">
        <property type="entry name" value="STOMATIN"/>
    </dbReference>
    <dbReference type="SMART" id="SM00244">
        <property type="entry name" value="PHB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF117892">
        <property type="entry name" value="SSF117892"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="PHB" evidence="2">
        <location>
            <begin position="148"/>
            <end position="307"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00008164"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="SMART" id="SM00244"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ABX33322.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="379" mass="42045" checksum="A7B5607BEBD30485" modified="2008-01-15" version="1">MLKIQRITVKKNERALLLRNGDFERVLHSGRHWLFAGTDQLRVETFALEQPAFTHGLADYLMAQEPAVVAAEFLRVELSETEAGLRSENGVLVEILPPGTRRLYWKGLVDVGVQVVDLQAGAELPAALAARLTQTQLRQRSVSGLNGVLQVQVPAGQCALLTIDGKVDRLLQAGSHAFWKFGRSIAVELVDLRLQAVEVSGQDIMTRDKVSLRLNLSATYRHTDVLRAFAQLQKPAEHLYRELQFALRAAVGTRTLDELLENKTVIDDVVTAHMAAKLQPFGMVVESVGVKDIVLPGEMKAILTQVVQAEKQAQANVIRRREETAATRSLLNTAKVMEDNPVALRMKELETLERVAERIDKISVFGGLDQVLNGLVKMR</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-05-25" version="67" xmlns="http://uniprot.org/uniprot">
    <accession>A9BRH7</accession>
    <name>A9BRH7_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">L-carnitine dehydratase/bile acid-inducible protein F</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_0692</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX33338.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012202624.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_0692"/>
    <dbReference type="EnsemblBacteria" id="ABX33338">
        <property type="protein sequence ID" value="ABX33338"/>
        <property type="gene ID" value="Daci_0692"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_0692"/>
    <dbReference type="eggNOG" id="COG1804">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_033975_5_0_4"/>
    <dbReference type="OMA" id="LEPQFMQ"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003824">
        <property type="term" value="F:catalytic activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.1540.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.10540">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003673">
        <property type="entry name" value="CoA-Trfase_fam_III"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR044855">
        <property type="entry name" value="CoA-Trfase_III_dom3_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023606">
        <property type="entry name" value="CoA-Trfase_III_dom_1_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02515">
        <property type="entry name" value="CoA_transf_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF89796">
        <property type="entry name" value="SSF89796"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="332"/>
            <end position="374"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX33338.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="374" mass="38934" checksum="CA5DFFF27CDA5143" modified="2008-01-15" version="1">MKVLDSVRVLEIGGIGPGPFCAMHLADLGADVISIVRPEAEPAAASAASALSRGKRSVFADLKSPEGRDLVLALVRDADALIEGMRPGAMERLGLGPEACQALNPHLVYGRMTGWGQDGPLAQAAGHDNNYAAVSGALWGCAPAGARPVSPFATLGDIGGGAMYLMTGLLAGIVQARATGRGTVVDAAIVDGAAHMLNLMLHARQRGLVADERGHSIHDSAPFYETYACADGGFITVGAIEPQFHALLLDRLGLADAAAFQGPQWDRAAWPARRAQLQALFASRPRAHWQQLLEGSDACFGAVLSPVEAARHPHLQARGVYLQPEGGALQASPAPRFDGQAYAPGPANAAGSDTASVREKVSAGRAQEVWRSAR</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="61" xmlns="http://uniprot.org/uniprot">
    <accession>A9BRY4</accession>
    <name>A9BRY4_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Putative lipoprotein transmembrane</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Daci_0748</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="4" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX33394.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012202680.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_0748"/>
    <dbReference type="PRIDE" id="A9BRY4"/>
    <dbReference type="EnsemblBacteria" id="ABX33394">
        <property type="protein sequence ID" value="ABX33394"/>
        <property type="gene ID" value="Daci_0748"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_0748"/>
    <dbReference type="eggNOG" id="COG0810">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_102167_0_0_4"/>
    <dbReference type="OMA" id="IWLGEKP"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016872">
        <property type="term" value="F:intramolecular lyase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.50.70.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016087">
        <property type="entry name" value="Chalcone_isomerase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016088">
        <property type="entry name" value="Chalcone_isomerase_3-sand"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036298">
        <property type="entry name" value="Chalcone_isomerase_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF16036">
        <property type="entry name" value="Chalcone_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54626">
        <property type="entry name" value="SSF54626"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-0449">Lipoprotein</keyword>
    <keyword evidence="3" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <keyword evidence="3" id="KW-0812">Transmembrane</keyword>
    <feature type="signal peptide" evidence="1">
        <location>
            <begin position="1"/>
            <end position="25"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5002735027" evidence="1">
        <location>
            <begin position="26"/>
            <end position="198"/>
        </location>
    </feature>
    <feature type="domain" description="Chalcone_isomerase" evidence="2">
        <location>
            <begin position="31"/>
            <end position="197"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF16036"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ABX33394.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="198" mass="21297" checksum="48C09256DF232E2B" modified="2008-01-15" version="1">MTALPRWMKTAALAMALAMPLAATAQEPPRTVAGVAYPAQAGVGGQTLQLNGAGIRYKAIFKVYTAGLYLEKPAASLQEIAALPGPKRVSVTMLREIDSAELGKLFARGIEDNMERARFSRLVPGVLRMSDIFTQHKKLLPGENFSVDWVPGQGAQVFVKGQAQGAPFQEPEFFQALLGIWLGPHPADEQLKKALLGG</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="60" xmlns="http://uniprot.org/uniprot">
    <accession>A9BS48</accession>
    <name>A9BS48_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Phenylacetate-CoA oxygenase, PaaI subunit</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Daci_0812</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="2" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX33458.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012202744.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_0812"/>
    <dbReference type="PRIDE" id="A9BS48"/>
    <dbReference type="EnsemblBacteria" id="ABX33458">
        <property type="protein sequence ID" value="ABX33458"/>
        <property type="gene ID" value="Daci_0812"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_0812"/>
    <dbReference type="eggNOG" id="COG3396">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_070585_0_0_4"/>
    <dbReference type="OMA" id="NGDFAHT"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0010124">
        <property type="term" value="P:phenylacetate catabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.1260.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012347">
        <property type="entry name" value="Ferritin-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009078">
        <property type="entry name" value="Ferritin-like_SF"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007814">
        <property type="entry name" value="PaaA_PaaC"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011882">
        <property type="entry name" value="PaaC"/>
    </dbReference>
    <dbReference type="Pfam" id="PF05138">
        <property type="entry name" value="PaaA_PaaC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF037834">
        <property type="entry name" value="PA_CoA_Oase3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47240">
        <property type="entry name" value="SSF47240"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR02158">
        <property type="entry name" value="PA_CoA_Oxy3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ABX33458.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="260" mass="28852" checksum="1D109EB19D3BFE80" modified="2008-01-15" version="1">MNASASSIAIDARPDVQYLLRLGDTCLILAQRLGQWCGHAPILEEDIAMTNMALDLVGQARALLTRAGQLEGRAHDEDQLAFLRDERDYFNATLAELPRGDFAFTVLRNAMAATWLRLMWERLVQSSDAELAAIAAKALKEARYHEQHAGDWVVRLGDGTEESRQRMEAALGQLWRYAAELFTDDATDAAARASGLGPAWSELREPWQAEMAALLQEATLDMPAESAFRSTGRNGVHSEHMGFILAEMQHLQRAYPGGVW</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="73" xmlns="http://uniprot.org/uniprot">
    <accession>A9BS86</accession>
    <name>A9BS86_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="6">Binding-protein-dependent transport systems inner membrane component</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ordered locus">Daci_1055</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="7" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="4">Cell membrane</location>
            <topology evidence="4">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="4">Belongs to the binding-protein-dependent transport system permease family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX33700.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012202986.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_1055"/>
    <dbReference type="PRIDE" id="A9BS86"/>
    <dbReference type="EnsemblBacteria" id="ABX33700">
        <property type="protein sequence ID" value="ABX33700"/>
        <property type="gene ID" value="Daci_1055"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_1055"/>
    <dbReference type="eggNOG" id="COG1173">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_028518_5_2_4"/>
    <dbReference type="OMA" id="AWWLTTF"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0055085">
        <property type="term" value="P:transmembrane transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd06261">
        <property type="entry name" value="TM_PBP2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.3720.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000515">
        <property type="entry name" value="MetI-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035906">
        <property type="entry name" value="MetI-like_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00528">
        <property type="entry name" value="BPD_transp_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF161098">
        <property type="entry name" value="SSF161098"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50928">
        <property type="entry name" value="ABC_TM1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3 4" id="KW-0472">Membrane</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1 4" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="2 4" id="KW-1133">Transmembrane helix</keyword>
    <keyword evidence="4" id="KW-0813">Transport</keyword>
    <feature type="transmembrane region" description="Helical" evidence="4">
        <location>
            <begin position="60"/>
            <end position="81"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="4">
        <location>
            <begin position="128"/>
            <end position="148"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="4">
        <location>
            <begin position="160"/>
            <end position="179"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="4">
        <location>
            <begin position="185"/>
            <end position="203"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="4">
        <location>
            <begin position="242"/>
            <end position="267"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="4">
        <location>
            <begin position="287"/>
            <end position="306"/>
        </location>
    </feature>
    <feature type="domain" description="ABC transmembrane type-1" evidence="5">
        <location>
            <begin position="121"/>
            <end position="310"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="RuleBase" id="RU363032"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="PROSITE" id="PS50928"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="ABX33700.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="318" mass="32566" checksum="08A98D6784DE2DB2" modified="2008-01-15" version="1">MNTAVSSALSPALDAQAAPATPTPIPTALPASSLAPAPAAPRRSFALPARLQSLKRLPPTLALAWLVIAVAALWALAPGWFAHQNPIAGQAGQQLLAPGAAHWLGTDALGRDLWARVVHGAVHSLSGAFVAVGVGLAVGTLIGLLAGATGGRTEDALMRLVDVLLAVPSLLLSLTIIIVLGFGTINAAIAVGVVSVASFARLVRSEVVRVRRSDYVEAAFGSGGRFAAVLWRHVLPNSLTSVIAMAALQFGSAILAISTLGFLGYGAPPPTPEWGLLIAEGRNYIATAWWLTTAPGLIVVAVVLAANRIATAFARRPA</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="62" xmlns="http://uniprot.org/uniprot">
    <accession>A9BSE2</accession>
    <name>A9BSE2_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Nitrate reductase molybdenum cofactor assembly chaperone</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Daci_1111</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="4" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX33756.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012203042.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_1111"/>
    <dbReference type="PRIDE" id="A9BSE2"/>
    <dbReference type="EnsemblBacteria" id="ABX33756">
        <property type="protein sequence ID" value="ABX33756"/>
        <property type="gene ID" value="Daci_1111"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_1111"/>
    <dbReference type="eggNOG" id="COG2180">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_084469_0_1_4"/>
    <dbReference type="OMA" id="CELFDRG"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051082">
        <property type="term" value="F:unfolded protein binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051131">
        <property type="term" value="P:chaperone-mediated protein complex assembly"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0042128">
        <property type="term" value="P:nitrate assimilation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020945">
        <property type="entry name" value="DMSO/NO3_reduct_chaperone"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003765">
        <property type="entry name" value="NO3_reductase_chaperone_NarJ"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036411">
        <property type="entry name" value="TorD-like_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43680">
        <property type="entry name" value="PTHR43680"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02613">
        <property type="entry name" value="Nitrate_red_del"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF89155">
        <property type="entry name" value="SSF89155"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00684">
        <property type="entry name" value="narJ"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0534">Nitrate assimilation</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="200"/>
            <end position="237"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023063"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ABX33756.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="237" mass="25972" checksum="C7EE35532EDC4185" modified="2008-01-15" version="1">MFNHNTSSPVRLTLRALACLIGYPGAELRALLPGLIDALRLEQSVAPARLRELQQLAEQLQAMDPFEAEARYVDTFDRGHQTSLHLFEHVHGDSADRGPALIDLQQTYERAGLAFEADELPDHLAVVLEFASTQPPAIARGFLGEMAHILNALFTALARRDSPYASVIAAVLEITGHRAERVEIRPEPAMDEAWAEPAAFDGCSSQGQSRPGAEQPVHFVRRTAAPQAQGPRQRSLT</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="78" xmlns="http://uniprot.org/uniprot">
    <accession>A9BSJ0</accession>
    <name>A9BSJ0_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Transcriptional regulator, GntR family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ordered locus">Daci_1351</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="6" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX33995.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012203281.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_1351"/>
    <dbReference type="PRIDE" id="A9BSJ0"/>
    <dbReference type="EnsemblBacteria" id="ABX33995">
        <property type="protein sequence ID" value="ABX33995"/>
        <property type="gene ID" value="Daci_1351"/>
    </dbReference>
    <dbReference type="GeneID" id="60685909"/>
    <dbReference type="KEGG" id="dac:Daci_1351"/>
    <dbReference type="eggNOG" id="COG1802">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_017584_5_1_4"/>
    <dbReference type="OMA" id="SQTVRAQ"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003700">
        <property type="term" value="F:DNA-binding transcription factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd07377">
        <property type="entry name" value="WHTH_GntR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.120.530">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011711">
        <property type="entry name" value="GntR_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008920">
        <property type="entry name" value="TF_FadR/GntR_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000524">
        <property type="entry name" value="Tscrpt_reg_HTH_GntR"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036390">
        <property type="entry name" value="WH_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07729">
        <property type="entry name" value="FCD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00392">
        <property type="entry name" value="GntR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00895">
        <property type="entry name" value="FCD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00345">
        <property type="entry name" value="HTH_GNTR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46785">
        <property type="entry name" value="SSF46785"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48008">
        <property type="entry name" value="SSF48008"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50949">
        <property type="entry name" value="HTH_GNTR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0804">Transcription</keyword>
    <keyword evidence="1" id="KW-0805">Transcription regulation</keyword>
    <feature type="domain" description="HTH gntR-type" evidence="4">
        <location>
            <begin position="15"/>
            <end position="83"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023015"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023163"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="PROSITE" id="PS50949"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="ABX33995.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="252" mass="27494" checksum="DE6B9E225C62A2AF" modified="2008-01-15" version="1">MSPQLAPAASEAESHSQVIKAQLQLREMILAGELPAGERIAELTVVQRLGISRTPVRAALMRLEQEGLLEAMAGGRGYRVRLFSEADVADAIELRGTLEGLAARWAAERGVAEPLLAQAGRCLDAIDRVLETADWGDEAFSRYVALNSEFHDLLHSMAGSSVMQRELERVVRMPFASPSGFVLARAESPRARHSLMVAQDQHRQVLDAIAAREGARAEALMKEHSRIARRNLREAVSEPGSHAVPGVQLIRA</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="58" xmlns="http://uniprot.org/uniprot">
    <accession>A9BSU1</accession>
    <name>A9BSU1_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="4">Translocation and assembly module subunit TamA</fullName>
        </recommendedName>
        <alternativeName>
            <fullName evidence="7">Autotransporter assembly factor TamA</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="10" type="ordered locus">Daci_1658</name>
    </gene>
    <organism evidence="10 11">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="10 11" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="11">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="11" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="11">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="2">Cell outer membrane</location>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="1">Membrane</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="3">Belongs to the TamA family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX34301.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_1658"/>
    <dbReference type="PRIDE" id="A9BSU1"/>
    <dbReference type="EnsemblBacteria" id="ABX34301">
        <property type="protein sequence ID" value="ABX34301"/>
        <property type="gene ID" value="Daci_1658"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_1658"/>
    <dbReference type="eggNOG" id="COG0729">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_018618_2_0_4"/>
    <dbReference type="OMA" id="NTTMLLY"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009279">
        <property type="term" value="C:cell outer membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000184">
        <property type="entry name" value="Bac_surfAg_D15"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR039910">
        <property type="entry name" value="D15-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035243">
        <property type="entry name" value="TamA_POTRA_Dom_1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR12815">
        <property type="entry name" value="PTHR12815"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01103">
        <property type="entry name" value="Omp85"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF17243">
        <property type="entry name" value="POTRA_TamA_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="6" id="KW-0472">Membrane</keyword>
    <keyword evidence="11" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="5" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="5" id="KW-1134">Transmembrane beta strand</keyword>
    <feature type="domain" description="POTRA_TamA_1" evidence="9">
        <location>
            <begin position="62"/>
            <end position="136"/>
        </location>
    </feature>
    <feature type="domain" description="Omp85" evidence="8">
        <location>
            <begin position="408"/>
            <end position="640"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004370"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00004442"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00010248"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00015419"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022452"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00033063"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="Pfam" id="PF01103"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="9">
        <source>
            <dbReference type="Pfam" id="PF17243"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="EMBL" id="ABX34301.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="640" mass="70318" checksum="91387CF79422781F" modified="2008-01-15" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2021-06-02" version="45" xmlns="http://uniprot.org/uniprot">
    <accession>A9BSW3</accession>
    <name>A9BSW3_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Putative transmembrane protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_1680</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX34323.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012203608.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_1680"/>
    <dbReference type="EnsemblBacteria" id="ABX34323">
        <property type="protein sequence ID" value="ABX34323"/>
        <property type="gene ID" value="Daci_1680"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_1680"/>
    <dbReference type="eggNOG" id="ENOG5032ZWH">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_162755_2_1_4"/>
    <dbReference type="OMA" id="RSLMFRV"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR021313">
        <property type="entry name" value="DUF2909"/>
    </dbReference>
    <dbReference type="Pfam" id="PF11137">
        <property type="entry name" value="DUF2909"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1 2" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="43"/>
            <end position="66"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX34323.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="80" mass="8795" checksum="5F568302AC7CF25B" modified="2008-01-15" version="1">MKFVIVLALLAIVASLGSALFFMMRRNPEDQEGAGDDRRRSRAMFRALALRVGLSITLFLCVLLAAKLGYIHPTGWTAGQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="59" xmlns="http://uniprot.org/uniprot">
    <accession>A9BTH2</accession>
    <name>A9BTH2_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Mn2+-dependent serine/threonine protein kinase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_2302</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX34940.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012204223.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_2302"/>
    <dbReference type="PRIDE" id="A9BTH2"/>
    <dbReference type="EnsemblBacteria" id="ABX34940">
        <property type="protein sequence ID" value="ABX34940"/>
        <property type="gene ID" value="Daci_2302"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_2302"/>
    <dbReference type="eggNOG" id="COG0515">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_034924_0_0_4"/>
    <dbReference type="OMA" id="HTIDEHE"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004674">
        <property type="term" value="F:protein serine/threonine kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016310">
        <property type="term" value="P:phosphorylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011009">
        <property type="entry name" value="Kinase-like_dom_sf"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56112">
        <property type="entry name" value="SSF56112"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0418">Kinase</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0723">Serine/threonine-protein kinase</keyword>
    <keyword evidence="2" id="KW-0808">Transferase</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="467"/>
            <end position="549"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Pro residues" evidence="1">
        <location>
            <begin position="479"/>
            <end position="493"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Pro residues" evidence="1">
        <location>
            <begin position="509"/>
            <end position="523"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="524"/>
            <end position="549"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX34940.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="561" mass="61145" checksum="E758C70B4689A1B3" modified="2008-01-15" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="89" xmlns="http://uniprot.org/uniprot">
    <accession>A9BTX9</accession>
    <name>A9BTX9_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Two component transcriptional regulator, winged helix family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ordered locus">Daci_2755</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="6" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX35393.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012204603.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_2755"/>
    <dbReference type="PRIDE" id="A9BTX9"/>
    <dbReference type="EnsemblBacteria" id="ABX35393">
        <property type="protein sequence ID" value="ABX35393"/>
        <property type="gene ID" value="Daci_2755"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_2755"/>
    <dbReference type="eggNOG" id="COG0745">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_000445_30_1_4"/>
    <dbReference type="OMA" id="RHVWQYE"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000160">
        <property type="term" value="P:phosphorelay signal transduction system"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006355">
        <property type="term" value="P:regulation of transcription, DNA-templated"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd00383">
        <property type="entry name" value="trans_reg_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011006">
        <property type="entry name" value="CheY-like_superfamily"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001867">
        <property type="entry name" value="OmpR/PhoB-type_DNA-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001789">
        <property type="entry name" value="Sig_transdc_resp-reg_receiver"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR039420">
        <property type="entry name" value="WalR-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR48111">
        <property type="entry name" value="PTHR48111"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00072">
        <property type="entry name" value="Response_reg"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00486">
        <property type="entry name" value="Trans_reg_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00448">
        <property type="entry name" value="REC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00862">
        <property type="entry name" value="Trans_reg_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52172">
        <property type="entry name" value="SSF52172"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51755">
        <property type="entry name" value="OMPR_PHOB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50110">
        <property type="entry name" value="RESPONSE_REGULATORY"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="1" id="KW-0597">Phosphoprotein</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Response regulatory" evidence="3">
        <location>
            <begin position="2"/>
            <end position="116"/>
        </location>
    </feature>
    <feature type="domain" description="OmpR/PhoB-type" evidence="4">
        <location>
            <begin position="124"/>
            <end position="220"/>
        </location>
    </feature>
    <feature type="DNA-binding region" description="OmpR/PhoB-type" evidence="2">
        <location>
            <begin position="124"/>
            <end position="220"/>
        </location>
    </feature>
    <feature type="modified residue" description="4-aspartylphosphate" evidence="1">
        <location>
            <position position="51"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00169"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU01091"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="PROSITE" id="PS50110"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="PROSITE" id="PS51755"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="ABX35393.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="221" mass="24059" checksum="1E1541EF8E447EC9" modified="2008-01-15" version="1">MRVLVVEDDPALRLGICRRLQAEGWQVDAVTDGEYALTATATQDYDIAVLDLGLPRRPGIEVLRAWRAQRKALAVLILTASDGLQNRLLGLNEGADDYLAKPFEPEELVARMRAIVRRSHGGASNLLTVGALSFNTDTRELFLQGERLALSPREAALLELLISAPGAAVPKSRIISTMSSWEANFSANAVEIYILKLRRKLAGAGVRIVTLRGIGYVLEAA</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="82" xmlns="http://uniprot.org/uniprot">
    <accession>A9BTY1</accession>
    <name>A9BTY1_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="4 6">Bacterioferritin</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="8" type="ordered locus">Daci_2757</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="9" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="6">Iron-storage protein.</text>
    </comment>
    <comment type="subunit">
        <text evidence="2">Oligomer of 24 subunits, arranged as 12 dimers, that are packed together to form an approximately spherical molecule with a central cavity, in which large amounts of iron can be deposited.</text>
    </comment>
    <comment type="similarity">
        <text evidence="1 4 6">Belongs to the bacterioferritin family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX35395.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012204605.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_2757"/>
    <dbReference type="PRIDE" id="A9BTY1"/>
    <dbReference type="EnsemblBacteria" id="ABX35395">
        <property type="protein sequence ID" value="ABX35395"/>
        <property type="gene ID" value="Daci_2757"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_2757"/>
    <dbReference type="eggNOG" id="COG2193">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_104506_0_0_4"/>
    <dbReference type="OMA" id="LYERIDH"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008199">
        <property type="term" value="F:ferric iron binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006879">
        <property type="term" value="P:cellular iron ion homeostasis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006826">
        <property type="term" value="P:iron ion transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd00907">
        <property type="entry name" value="Bacterioferritin"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.1260.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002024">
        <property type="entry name" value="Bacterioferritin"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012347">
        <property type="entry name" value="Ferritin-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009040">
        <property type="entry name" value="Ferritin-like_diiron"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009078">
        <property type="entry name" value="Ferritin-like_SF"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008331">
        <property type="entry name" value="Ferritin_DPS_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00210">
        <property type="entry name" value="Ferritin"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF002560">
        <property type="entry name" value="Bacterioferritin"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00601">
        <property type="entry name" value="BACFERRITIN"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47240">
        <property type="entry name" value="SSF47240"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00754">
        <property type="entry name" value="bfr"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00549">
        <property type="entry name" value="BACTERIOFERRITIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50905">
        <property type="entry name" value="FERRITIN_LIKE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3 4 6" id="KW-0349">Heme</keyword>
    <keyword evidence="4 5 6" id="KW-0408">Iron</keyword>
    <keyword evidence="4 6" id="KW-0409">Iron storage</keyword>
    <keyword evidence="4 5 6" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Ferritin-like diiron" evidence="7">
        <location>
            <begin position="1"/>
            <end position="145"/>
        </location>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <position position="18"/>
        </location>
        <ligand>
            <name>Fe cation</name>
            <dbReference type="ChEBI" id="CHEBI:24875"/>
            <label>1</label>
        </ligand>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <position position="46"/>
        </location>
        <ligand>
            <name>Fe cation</name>
            <dbReference type="ChEBI" id="CHEBI:24875"/>
            <label>3</label>
        </ligand>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <position position="50"/>
        </location>
        <ligand>
            <name>Fe cation</name>
            <dbReference type="ChEBI" id="CHEBI:24875"/>
            <label>3</label>
        </ligand>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <position position="51"/>
        </location>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <position position="54"/>
        </location>
        <ligand>
            <name>Fe cation</name>
            <dbReference type="ChEBI" id="CHEBI:24875"/>
            <label>1</label>
        </ligand>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <position position="93"/>
        </location>
        <ligand>
            <name>Fe cation</name>
            <dbReference type="ChEBI" id="CHEBI:24875"/>
            <label>2</label>
        </ligand>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <position position="127"/>
        </location>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <position position="130"/>
        </location>
        <ligand>
            <name>Fe cation</name>
            <dbReference type="ChEBI" id="CHEBI:24875"/>
            <label>2</label>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00008093"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00011713"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022617"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="PIRNR" id="PIRNR002560"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="PIRSR" id="PIRSR002560-1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="RuleBase" id="RU000623"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="PROSITE" id="PS50905"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="ABX35395.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="158" mass="18541" checksum="D0DF31343C153C5A" modified="2008-01-15" version="1">MQGQPEVIECLIELLRGELAARDQYFIHSRQYEDQGLLRLFERIGHEMEEETQHADAILRRILFLGGRPDMRPHEFTPGETVEEMLRKDLATEYRVRDSLRSAMALCERHSDYNSRDLLLAQLRDTEEDHAYWLEKQLGLIEKIGLPNYLQSKMGEPA</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="70" xmlns="http://uniprot.org/uniprot">
    <accession>A9BU38</accession>
    <name>A9BU38_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Cerebroside-sulfatase</fullName>
            <ecNumber evidence="3">3.1.6.8</ecNumber>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Daci_3115</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="4" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="PTM">
        <text evidence="1">The conversion to 3-oxoalanine (also known as C-formylglycine, FGly), of a serine or cysteine residue in prokaryotes and of a cysteine residue in eukaryotes, is critical for catalytic activity.</text>
    </comment>
    <dbReference type="EC" id="3.1.6.8" evidence="3"/>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX35753.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012204954.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_3115"/>
    <dbReference type="PRIDE" id="A9BU38"/>
    <dbReference type="EnsemblBacteria" id="ABX35753">
        <property type="protein sequence ID" value="ABX35753"/>
        <property type="gene ID" value="Daci_3115"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_3115"/>
    <dbReference type="eggNOG" id="COG3119">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_006332_10_0_4"/>
    <dbReference type="OMA" id="PCLFHIR"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004098">
        <property type="term" value="F:cerebroside-sulfatase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.720.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017850">
        <property type="entry name" value="Alkaline_phosphatase_core_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000917">
        <property type="entry name" value="Sulfatase_N"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00884">
        <property type="entry name" value="Sulfatase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53649">
        <property type="entry name" value="SSF53649"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Sulfatase" evidence="2">
        <location>
            <begin position="4"/>
            <end position="326"/>
        </location>
    </feature>
    <feature type="modified residue" description="3-oxoalanine (Cys)" evidence="1">
        <location>
            <position position="54"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="PIRSR" id="PIRSR600917-51"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF00884"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ABX35753.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="440" mass="49283" checksum="DCDF22353E0C8DB5" modified="2008-01-15" version="1">MNPPNIVLIVADNLGWGELGCYGGGALRGAPTPRIDQLATEGLLLQNFNVESDCVPTRSALMTGRHPIRTGALQSVPAGLPQGLTRGETTLAQLLSAQGYATAHFGKWHLGDIPGRYPSDRGFDEWYGIPRTTDESQFTATTGYDPLVAPLPHIMEGRAGAPSDDVKVYDLESRRNIDAELVERSLDFMRRNHARDRRFFLYLPLVHLHFPTLPHADFAGRTGQGDFADSMVEMDHRVGQISDEIDRLGLREDTLFIFCSDNGPEFRQPYRGTAGPWRGTYHTAMEGSLRVPFIARWPGRIQAGRTSNEIMHVTDIFSTLAAVAGAAVPQDRPIDGLDQTAFLLGEPRSAREGFLFYIKDQLRAAKWRDWKLHFYWEPEVNESKGKLESPYLFNIVRDPKEEHDVLIFNTWVLNPMLTMVQRFNESCKAHPNTAPGAPDQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="80" xmlns="http://uniprot.org/uniprot">
    <accession>A9BU92</accession>
    <name>A9BU92_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="14">Gluconate 2-dehydrogenase (Acceptor)</fullName>
            <ecNumber evidence="14">1.1.99.3</ecNumber>
        </submittedName>
    </protein>
    <gene>
        <name evidence="14" type="ordered locus">Daci_3169</name>
    </gene>
    <organism evidence="14 15">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="14 15" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="15">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="15" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="15">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="8">
            <name>heme c</name>
            <dbReference type="ChEBI" id="CHEBI:61717"/>
        </cofactor>
        <text evidence="8">Binds 3 heme c groups covalently per subunit.</text>
    </comment>
    <comment type="PTM">
        <text evidence="9">Binds 3 heme groups per subunit.</text>
    </comment>
    <dbReference type="EC" id="1.1.99.3" evidence="14"/>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX35807.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012205007.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_3169"/>
    <dbReference type="PRIDE" id="A9BU92"/>
    <dbReference type="EnsemblBacteria" id="ABX35807">
        <property type="protein sequence ID" value="ABX35807"/>
        <property type="gene ID" value="Daci_3169"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_3169"/>
    <dbReference type="eggNOG" id="COG2010">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_028594_0_1_4"/>
    <dbReference type="OMA" id="CHTPRGM"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009055">
        <property type="term" value="F:electron transfer activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0033717">
        <property type="term" value="F:gluconate 2-dehydrogenase (acceptor) activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0020037">
        <property type="term" value="F:heme binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005506">
        <property type="term" value="F:iron ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.760.10">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009056">
        <property type="entry name" value="Cyt_c-like_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036909">
        <property type="entry name" value="Cyt_c-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014353">
        <property type="entry name" value="Membr-bd_ADH_cyt_c"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13442">
        <property type="entry name" value="Cytochrome_CBB3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF000018">
        <property type="entry name" value="Mb_ADH_cyt_c"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46626">
        <property type="entry name" value="SSF46626"/>
        <property type="match status" value="3"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51007">
        <property type="entry name" value="CYTC"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="2 8 10" id="KW-0349">Heme</keyword>
    <keyword evidence="6 9 10" id="KW-0408">Iron</keyword>
    <keyword evidence="7 12" id="KW-0472">Membrane</keyword>
    <keyword evidence="3 9 10" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="14" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="15" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="5" id="KW-0677">Repeat</keyword>
    <keyword evidence="4" id="KW-0732">Signal</keyword>
    <keyword evidence="12" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="12" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="12">
        <location>
            <begin position="44"/>
            <end position="62"/>
        </location>
    </feature>
    <feature type="domain" description="Cytochrome c" evidence="13">
        <location>
            <begin position="80"/>
            <end position="190"/>
        </location>
    </feature>
    <feature type="domain" description="Cytochrome c" evidence="13">
        <location>
            <begin position="374"/>
            <end position="466"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="11">
        <location>
            <begin position="1"/>
            <end position="37"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="11">
        <location>
            <begin position="337"/>
            <end position="368"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="11">
        <location>
            <begin position="1"/>
            <end position="17"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="11">
        <location>
            <begin position="352"/>
            <end position="368"/>
        </location>
    </feature>
    <feature type="binding site" description="covalent" evidence="8">
        <location>
            <position position="94"/>
        </location>
        <ligand>
            <name>heme</name>
            <dbReference type="ChEBI" id="CHEBI:30413"/>
            <label>1</label>
        </ligand>
    </feature>
    <feature type="binding site" description="covalent" evidence="8">
        <location>
            <position position="97"/>
        </location>
        <ligand>
            <name>heme</name>
            <dbReference type="ChEBI" id="CHEBI:30413"/>
            <label>1</label>
        </ligand>
    </feature>
    <feature type="binding site" description="axial binding residue" evidence="9">
        <location>
            <position position="98"/>
        </location>
        <ligand>
            <name>heme</name>
            <dbReference type="ChEBI" id="CHEBI:30413"/>
            <label>1</label>
        </ligand>
        <ligandPart>
            <name>Fe</name>
            <dbReference type="ChEBI" id="CHEBI:18248"/>
        </ligandPart>
    </feature>
    <feature type="binding site" description="covalent" evidence="8">
        <location>
            <position position="248"/>
        </location>
        <ligand>
            <name>heme</name>
            <dbReference type="ChEBI" id="CHEBI:30413"/>
            <label>2</label>
        </ligand>
    </feature>
    <feature type="binding site" description="covalent" evidence="8">
        <location>
            <position position="251"/>
        </location>
        <ligand>
            <name>heme</name>
            <dbReference type="ChEBI" id="CHEBI:30413"/>
            <label>2</label>
        </ligand>
    </feature>
    <feature type="binding site" description="axial binding residue" evidence="9">
        <location>
            <position position="252"/>
        </location>
        <ligand>
            <name>heme</name>
            <dbReference type="ChEBI" id="CHEBI:30413"/>
            <label>2</label>
        </ligand>
        <ligandPart>
            <name>Fe</name>
            <dbReference type="ChEBI" id="CHEBI:18248"/>
        </ligandPart>
    </feature>
    <feature type="binding site" description="covalent" evidence="8">
        <location>
            <position position="387"/>
        </location>
        <ligand>
            <name>heme</name>
            <dbReference type="ChEBI" id="CHEBI:30413"/>
            <label>3</label>
        </ligand>
    </feature>
    <feature type="binding site" description="covalent" evidence="8">
        <location>
            <position position="390"/>
        </location>
        <ligand>
            <name>heme</name>
            <dbReference type="ChEBI" id="CHEBI:30413"/>
            <label>3</label>
        </ligand>
    </feature>
    <feature type="binding site" description="axial binding residue" evidence="9">
        <location>
            <position position="391"/>
        </location>
        <ligand>
            <name>heme</name>
            <dbReference type="ChEBI" id="CHEBI:30413"/>
            <label>3</label>
        </ligand>
        <ligandPart>
            <name>Fe</name>
            <dbReference type="ChEBI" id="CHEBI:18248"/>
        </ligandPart>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022617"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022729"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022737"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023004"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="PIRSR" id="PIRSR000018-50"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="PIRSR" id="PIRSR000018-51"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00433"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="12">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="13">
        <source>
            <dbReference type="PROSITE" id="PS51007"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="14">
        <source>
            <dbReference type="EMBL" id="ABX35807.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="15">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="494" mass="51751" checksum="BD27A24660047E12" modified="2008-01-15" version="1">MSAADPSAATPTAATGSPTAAPPADYSGARPPPPRRPRRRWRRLLLVLLLLAVLFAIAAVWGNRPHVPQREPQAVHRSPQQLAQGLYLARAADCMACHDGVGGMGGAREGQPFAGGKPLPTPFGTLYGTNITPDPDHGIGRWTAEEFHAAVTRGTAPGGRQLYPAMPYASYHLMSREDSDLIYGYLMNIRPVAQPNTKPALPFPFNLRVLMFGWKALFLSSAPLPVGSQGQSPAWLRGQYLGNVMGHCAECHTPRGMFGQMQKDRWLQGGTLSLFTAPGITAEALAARGWTREGMAQFLQTGFSAHGSAFDEMHEVIANSTRYLTAEDMTALSTFLLGDNPPAPQPLPAAVSPDSGTGNSGGNSAGNGAGNGAGTLDAGRGHYMALCASCHGSEGLGRSLTMPPLKGNSTVRQADARNLVLAILVGLPKHPATQQGPTPLPGMPGFIQELTDGEVAALANYTRTTLGGQPADVTAAQVADLRSAAGKSGHKAAP</sequence>
</entry>
<entry dataset="Swiss-Prot" created="2009-04-14" modified="2022-05-25" version="82" xmlns="http://uniprot.org/uniprot">
    <accession>A9BUC7</accession>
    <name>URE3_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Urease subunit gamma</fullName>
            <ecNumber evidence="1">3.5.1.5</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="1">Urea amidohydrolase subunit gamma</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="1" type="primary">ureA</name>
        <name type="ordered locus">Daci_1185</name>
    </gene>
    <organism>
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference key="1">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain>DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>2 H(+) + H2O + urea = CO2 + 2 NH4(+)</text>
            <dbReference type="Rhea" id="RHEA:20557"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:16199"/>
            <dbReference type="ChEBI" id="CHEBI:16526"/>
            <dbReference type="ChEBI" id="CHEBI:28938"/>
            <dbReference type="EC" id="3.5.1.5"/>
        </reaction>
    </comment>
    <comment type="pathway">
        <text evidence="1">Nitrogen metabolism; urea degradation; CO(2) and NH(3) from urea (urease route): step 1/1.</text>
    </comment>
    <comment type="subunit">
        <text evidence="1">Heterotrimer of UreA (gamma), UreB (beta) and UreC (alpha) subunits. Three heterotrimers associate to form the active enzyme.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="1">Belongs to the urease gamma subunit family.</text>
    </comment>
    <dbReference type="EC" id="3.5.1.5" evidence="1"/>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX33830.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012203116.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A9BUC7"/>
    <dbReference type="SMR" id="A9BUC7"/>
    <dbReference type="STRING" id="398578.Daci_1185"/>
    <dbReference type="EnsemblBacteria" id="ABX33830">
        <property type="protein sequence ID" value="ABX33830"/>
        <property type="gene ID" value="Daci_1185"/>
    </dbReference>
    <dbReference type="GeneID" id="60685753"/>
    <dbReference type="KEGG" id="dac:Daci_1185"/>
    <dbReference type="eggNOG" id="COG0831">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_145825_1_0_4"/>
    <dbReference type="OMA" id="MQLTPHE"/>
    <dbReference type="UniPathway" id="UPA00258">
        <property type="reaction ID" value="UER00370"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016151">
        <property type="term" value="F:nickel cation binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009039">
        <property type="term" value="F:urease activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043419">
        <property type="term" value="P:urea catabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniPathway"/>
    </dbReference>
    <dbReference type="CDD" id="cd00390">
        <property type="entry name" value="Urease_gamma"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.280.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00739">
        <property type="entry name" value="Urease_gamma"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012010">
        <property type="entry name" value="Urease_gamma"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002026">
        <property type="entry name" value="Urease_gamma/gamma-beta_su"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036463">
        <property type="entry name" value="Urease_gamma_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00547">
        <property type="entry name" value="Urease_gamma"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF001223">
        <property type="entry name" value="Urease_gamma"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54111">
        <property type="entry name" value="SSF54111"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00193">
        <property type="entry name" value="urease_gam"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword id="KW-0963">Cytoplasm</keyword>
    <keyword id="KW-0378">Hydrolase</keyword>
    <keyword id="KW-1185">Reference proteome</keyword>
    <feature type="chain" id="PRO_1000199862" description="Urease subunit gamma">
        <location>
            <begin position="1"/>
            <end position="100"/>
        </location>
    </feature>
    <evidence type="ECO:0000255" key="1">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00739"/>
        </source>
    </evidence>
    <sequence length="100" mass="11058" checksum="2F8580063B4C82A9" modified="2008-01-15" version="1">MELTPREKDKLLLFTAALVAERRKARGLKLNYPEAVALISAAVLEWARDGRTVAELMHLGTTVLTRADVMEGIPEMIPDIQVEATFPDGTKLVTVHHPIV</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="62" xmlns="http://uniprot.org/uniprot">
    <accession>A9BUT8</accession>
    <name>A9BUT8_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Enoyl-CoA hydratase/isomerase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_1758</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the enoyl-CoA hydratase/isomerase family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX34400.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012203685.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_1758"/>
    <dbReference type="PRIDE" id="A9BUT8"/>
    <dbReference type="EnsemblBacteria" id="ABX34400">
        <property type="protein sequence ID" value="ABX34400"/>
        <property type="gene ID" value="Daci_1758"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_1758"/>
    <dbReference type="eggNOG" id="COG1024">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_009834_7_2_4"/>
    <dbReference type="OMA" id="HHVYLQL"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016853">
        <property type="term" value="F:isomerase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.12.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029045">
        <property type="entry name" value="ClpP/crotonase-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001753">
        <property type="entry name" value="Enoyl-CoA_hydra/iso"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014748">
        <property type="entry name" value="Enoyl-CoA_hydra_C"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00378">
        <property type="entry name" value="ECH_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52096">
        <property type="entry name" value="SSF52096"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2" id="KW-0413">Isomerase</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00005254"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX34400.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="263" mass="28021" checksum="F1C7B12BD677959C" modified="2008-01-15" version="1">MNYELILLNVADAVATLTLNRPDKRNAMSDDMRTEFIDALERVAADKAIKALVLTGAGKGFCAGGDIAGMQRRMNAPAGEVGFNGWQRQQRVHHVQALLHTMPKPVIAAVNGAASGLGADTALACDFVIASEWASFAWSYVLRGIIPDGGGMYFLPRRVGLAKAKELIFTGRQVKLPEALALGIVDRQASAETLVADAQAWARELSSASSTALALTKTILNQSFELSSHDVFAQGSQAQGICYTSSEHRASVEAFLAKTAGKE</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="51" xmlns="http://uniprot.org/uniprot">
    <accession>A9BUY5</accession>
    <name>A9BUY5_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Transport-associated protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Daci_1805</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="4" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX34447.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012203732.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_1805"/>
    <dbReference type="PRIDE" id="A9BUY5"/>
    <dbReference type="EnsemblBacteria" id="ABX34447">
        <property type="protein sequence ID" value="ABX34447"/>
        <property type="gene ID" value="Daci_1805"/>
    </dbReference>
    <dbReference type="GeneID" id="60686231"/>
    <dbReference type="KEGG" id="dac:Daci_1805"/>
    <dbReference type="eggNOG" id="COG2823">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_098552_3_0_4"/>
    <dbReference type="OMA" id="KTLSAFC"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007055">
        <property type="entry name" value="BON_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014004">
        <property type="entry name" value="Transpt-assoc_nodulatn_dom_bac"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04972">
        <property type="entry name" value="BON"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00749">
        <property type="entry name" value="BON"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50914">
        <property type="entry name" value="BON"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="1">
        <location>
            <begin position="1"/>
            <end position="27"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5002735831" evidence="1">
        <location>
            <begin position="28"/>
            <end position="106"/>
        </location>
    </feature>
    <feature type="domain" description="BON" evidence="2">
        <location>
            <begin position="38"/>
            <end position="106"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS50914"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ABX34447.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="106" mass="11124" checksum="9DA764AB35E81D68" modified="2008-01-15" version="1">MQKYTRAIAFALVAGATVLGTTACSVARDQQTVGSYVDDAGITTAVKAKMAEDKSVSATSISVETLNGTVQLSGFAKSESEKARAAEIARTTKNVREVRNSIVVRP</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="47" xmlns="http://uniprot.org/uniprot">
    <accession>A9BUY6</accession>
    <name>A9BUY6_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_1806</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX34448.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012203733.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_1806"/>
    <dbReference type="PRIDE" id="A9BUY6"/>
    <dbReference type="EnsemblBacteria" id="ABX34448">
        <property type="protein sequence ID" value="ABX34448"/>
        <property type="gene ID" value="Daci_1806"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_1806"/>
    <dbReference type="eggNOG" id="ENOG50336A9">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_128090_0_0_4"/>
    <dbReference type="OMA" id="RMTNESI"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="106"/>
            <end position="123"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX34448.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="129" mass="13726" checksum="657B8496E86A7C4F" modified="2008-01-15" version="1">MSQAEKAVNKAADTAKDVAQDVADAAKEAVNTTRRTAANALDKAEEGVKSVERELNPVIDDLAARAQELATRGINFCADSSDRARRQLQSATEATTRYVIEQPGRSILLAAATGAALATAFFMSSRSRK</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="59" xmlns="http://uniprot.org/uniprot">
    <accession>A9BUZ4</accession>
    <name>A9BUZ4_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Rhodanese domain protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_1814</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX34456.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012203741.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_1814"/>
    <dbReference type="PRIDE" id="A9BUZ4"/>
    <dbReference type="EnsemblBacteria" id="ABX34456">
        <property type="protein sequence ID" value="ABX34456"/>
        <property type="gene ID" value="Daci_1814"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_1814"/>
    <dbReference type="eggNOG" id="COG0607">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_089574_1_5_4"/>
    <dbReference type="OMA" id="HKAQPVI"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.250.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001763">
        <property type="entry name" value="Rhodanese-like_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036873">
        <property type="entry name" value="Rhodanese-like_dom_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00581">
        <property type="entry name" value="Rhodanese"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00450">
        <property type="entry name" value="RHOD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52821">
        <property type="entry name" value="SSF52821"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50206">
        <property type="entry name" value="RHODANESE_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Rhodanese" evidence="1">
        <location>
            <begin position="44"/>
            <end position="134"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS50206"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX34456.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="135" mass="14336" checksum="F4B4DC5320957C89" modified="2008-01-15" version="1">MKFIIDNWYLILIALASGVMLLLPLVRGAGGGSLTAAQAVQLINRQKAVVIDVCEPEEYAAAHANGARNVPLSQFEEKLPATVKNKALPLVLICTKGNRASRAEGIAKKLGYEKAQALAGGLKAWRDAGMPVEKA</sequence>
</entry>
<entry dataset="Swiss-Prot" created="2009-03-24" modified="2022-08-03" version="76" xmlns="http://uniprot.org/uniprot">
    <accession>A9BV02</accession>
    <name>PANB_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">3-methyl-2-oxobutanoate hydroxymethyltransferase</fullName>
            <ecNumber evidence="1">2.1.2.11</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="1">Ketopantoate hydroxymethyltransferase</fullName>
            <shortName evidence="1">KPHMT</shortName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="1" type="primary">panB</name>
        <name type="ordered locus">Daci_1822</name>
    </gene>
    <organism>
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference key="1">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain>DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="1">Catalyzes the reversible reaction in which hydroxymethyl group from 5,10-methylenetetrahydrofolate is transferred onto alpha-ketoisovalerate to form ketopantoate.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>(6R)-5,10-methylene-5,6,7,8-tetrahydrofolate + 3-methyl-2-oxobutanoate + H2O = (6S)-5,6,7,8-tetrahydrofolate + 2-dehydropantoate</text>
            <dbReference type="Rhea" id="RHEA:11824"/>
            <dbReference type="ChEBI" id="CHEBI:11561"/>
            <dbReference type="ChEBI" id="CHEBI:11851"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:15636"/>
            <dbReference type="ChEBI" id="CHEBI:57453"/>
            <dbReference type="EC" id="2.1.2.11"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </cofactor>
        <text evidence="1">Binds 1 Mg(2+) ion per subunit.</text>
    </comment>
    <comment type="pathway">
        <text evidence="1">Cofactor biosynthesis; (R)-pantothenate biosynthesis; (R)-pantoate from 3-methyl-2-oxobutanoate: step 1/2.</text>
    </comment>
    <comment type="subunit">
        <text evidence="1">Homodecamer; pentamer of dimers.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="1">Belongs to the PanB family.</text>
    </comment>
    <dbReference type="EC" id="2.1.2.11" evidence="1"/>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX34464.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012203749.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A9BV02"/>
    <dbReference type="SMR" id="A9BV02"/>
    <dbReference type="STRING" id="398578.Daci_1822"/>
    <dbReference type="PRIDE" id="A9BV02"/>
    <dbReference type="EnsemblBacteria" id="ABX34464">
        <property type="protein sequence ID" value="ABX34464"/>
        <property type="gene ID" value="Daci_1822"/>
    </dbReference>
    <dbReference type="GeneID" id="60686250"/>
    <dbReference type="KEGG" id="dac:Daci_1822"/>
    <dbReference type="eggNOG" id="COG0413">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_036645_1_0_4"/>
    <dbReference type="OMA" id="VLVWTDM"/>
    <dbReference type="UniPathway" id="UPA00028">
        <property type="reaction ID" value="UER00003"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003864">
        <property type="term" value="F:3-methyl-2-oxobutanoate hydroxymethyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015940">
        <property type="term" value="P:pantothenate biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd06557">
        <property type="entry name" value="KPHMT-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.20.20.60">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00156">
        <property type="entry name" value="PanB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003700">
        <property type="entry name" value="Pantoate_hydroxy_MeTrfase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015813">
        <property type="entry name" value="Pyrv/PenolPyrv_Kinase-like_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR040442">
        <property type="entry name" value="Pyrv_Kinase-like_dom_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR20881">
        <property type="entry name" value="PTHR20881"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02548">
        <property type="entry name" value="Pantoate_transf"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF000388">
        <property type="entry name" value="Pantoate_hydroxy_MeTrfase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51621">
        <property type="entry name" value="SSF51621"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00222">
        <property type="entry name" value="panB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword id="KW-0963">Cytoplasm</keyword>
    <keyword id="KW-0460">Magnesium</keyword>
    <keyword id="KW-0479">Metal-binding</keyword>
    <keyword id="KW-0566">Pantothenate biosynthesis</keyword>
    <keyword id="KW-1185">Reference proteome</keyword>
    <keyword id="KW-0808">Transferase</keyword>
    <feature type="chain" id="PRO_1000096960" description="3-methyl-2-oxobutanoate hydroxymethyltransferase">
        <location>
            <begin position="1"/>
            <end position="293"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="1"/>
            <end position="26"/>
        </location>
    </feature>
    <feature type="active site" description="Proton acceptor" evidence="1">
        <location>
            <position position="209"/>
        </location>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <begin position="68"/>
            <end position="69"/>
        </location>
        <ligand>
            <name>3-methyl-2-oxobutanoate</name>
            <dbReference type="ChEBI" id="CHEBI:11851"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <position position="68"/>
        </location>
        <ligand>
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <position position="111"/>
        </location>
        <ligand>
            <name>3-methyl-2-oxobutanoate</name>
            <dbReference type="ChEBI" id="CHEBI:11851"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <position position="111"/>
        </location>
        <ligand>
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <position position="140"/>
        </location>
        <ligand>
            <name>3-methyl-2-oxobutanoate</name>
            <dbReference type="ChEBI" id="CHEBI:11851"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <position position="142"/>
        </location>
        <ligand>
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000255" key="1">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00156"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <sequence length="293" mass="30883" checksum="1DF5504A29864BED" modified="2008-01-15" version="1">MTQAPVTAGTPYGTIPPASPLPQRRPVSLPRLAQMREAGEKITMVTAYDATFAAVADAAGVECILVGDSLGMVCQGLHSTVGVSLQDMCYHTASVARGLHRVQGTAWLIADMPYGSYAESREQAMRSACELMQAGAHMVKLEGGGWTAPTVQFLVERGVPVCAHLGLTPQTVHALGGYRVQGKSDEGAATLRRHALELQDAGASMLVLEMVPAQLSRELTAELPHCHTIGIGAGSGTAGQVLVLHDMLGVNLGKMARFVHNFMADAGSVKGAFEAYVHAVKNGSFPDDSKHAW</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="55" xmlns="http://uniprot.org/uniprot">
    <accession>A9BV99</accession>
    <name>A9BV99_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Putative lipoprotein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Daci_2123</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="4" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX34763.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012204046.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_2123"/>
    <dbReference type="PRIDE" id="A9BV99"/>
    <dbReference type="EnsemblBacteria" id="ABX34763">
        <property type="protein sequence ID" value="ABX34763"/>
        <property type="gene ID" value="Daci_2123"/>
    </dbReference>
    <dbReference type="GeneID" id="60686521"/>
    <dbReference type="KEGG" id="dac:Daci_2123"/>
    <dbReference type="eggNOG" id="COG2930">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_100983_0_0_4"/>
    <dbReference type="OMA" id="FRKSEGW"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007461">
        <property type="entry name" value="Ysc84_actin-binding"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04366">
        <property type="entry name" value="Ysc84"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-0449">Lipoprotein</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="1">
        <location>
            <begin position="1"/>
            <end position="23"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5002735124" evidence="1">
        <location>
            <begin position="24"/>
            <end position="194"/>
        </location>
    </feature>
    <feature type="domain" description="Ysc84" evidence="2">
        <location>
            <begin position="106"/>
            <end position="190"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF04366"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ABX34763.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="194" mass="19776" checksum="DE87CB4A259B3117" modified="2008-01-15" version="1">MRQFSLRTVVMATALAAGSIAMVGCTTTKPETQSAPRADATTVNARANAALERLYQTAPGSKEMVARSKGVLIFPSVIGGSFVIGVEHGRGVLRVGGQNKGYYSTTGASVGWQAGGQSKAVIYVFNTQEALDKFLASDGWSVGADATVAAGKVGANGSVDTTTAQGPVTSYVLTNAGLEAGVSLQGSKITKVVE</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="53" xmlns="http://uniprot.org/uniprot">
    <accession>A9BVA3</accession>
    <name>A9BVA3_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Xanthine dehydrogenase accessory protein XdhC</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Daci_2127</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="4" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX34767.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012204050.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_2127"/>
    <dbReference type="PRIDE" id="A9BVA3"/>
    <dbReference type="EnsemblBacteria" id="ABX34767">
        <property type="protein sequence ID" value="ABX34767"/>
        <property type="gene ID" value="Daci_2127"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_2127"/>
    <dbReference type="eggNOG" id="COG1975">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_041115_4_0_4"/>
    <dbReference type="OMA" id="YCIVMTH"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014308">
        <property type="entry name" value="Xanthine_DH_XdhC"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003777">
        <property type="entry name" value="XdhC_CoxI"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027051">
        <property type="entry name" value="XdhC_Rossmann_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13478">
        <property type="entry name" value="XdhC_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02625">
        <property type="entry name" value="XdhC_CoxI"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR02964">
        <property type="entry name" value="xanthine_xdhC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="XdhC_CoxI" evidence="1">
        <location>
            <begin position="17"/>
            <end position="69"/>
        </location>
    </feature>
    <feature type="domain" description="XdhC_C" evidence="2">
        <location>
            <begin position="133"/>
            <end position="279"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF02625"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF13478"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ABX34767.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="294" mass="32081" checksum="C076406E0B139B7E" modified="2008-01-15" version="1">MWSDTFKKVEQGLAQGPLCWVEVMESRGSVPRERGAWMAVFADRVAGTIGGGHLEFDAIDRARSLLRDAALQAGLAGQPGQAGPALAEHQHRYPLGPSLGQCCGGVVMLRFVLVPQGRMDMLRERLQPPRDCVALFGAGHVGHALVRLLCNLPYRVMWVDSRDSVFPEEEHELVQCEYSDPVQSAVADLPTGSQVLIMSFSHAEDLEVVAQCLSRQRQQGDLPYVGLIGSATKWATFRRRLRERGFSDAELDHVTCPIGVPGIKGKEPEVIAVAVAAQLLQRRSAAPAQNQGNL</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="57" xmlns="http://uniprot.org/uniprot">
    <accession>A9BVH4</accession>
    <name>A9BVH4_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="7">Radical SAM domain protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ordered locus">Daci_2403</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="8" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX35041.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_2403"/>
    <dbReference type="PRIDE" id="A9BVH4"/>
    <dbReference type="EnsemblBacteria" id="ABX35041">
        <property type="protein sequence ID" value="ABX35041"/>
        <property type="gene ID" value="Daci_2403"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_2403"/>
    <dbReference type="eggNOG" id="COG1533">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_015525_0_0_4"/>
    <dbReference type="OMA" id="GNTDCYQ"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051539">
        <property type="term" value="F:4 iron, 4 sulfur cluster binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003824">
        <property type="term" value="F:catalytic activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006638">
        <property type="entry name" value="Elp3/MiaB/NifB"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR040086">
        <property type="entry name" value="MJ0683-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007197">
        <property type="entry name" value="rSAM"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43432">
        <property type="entry name" value="PTHR43432"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04055">
        <property type="entry name" value="Radical_SAM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SFLD" id="SFLDS00029">
        <property type="entry name" value="Radical_SAM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SFLD" id="SFLDG01084">
        <property type="entry name" value="Uncharacterised_Radical_SAM_Su"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00729">
        <property type="entry name" value="Elp3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51918">
        <property type="entry name" value="RADICAL_SAM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0004">4Fe-4S</keyword>
    <keyword evidence="4" id="KW-0408">Iron</keyword>
    <keyword evidence="5" id="KW-0411">Iron-sulfur</keyword>
    <keyword evidence="3" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0949">S-adenosyl-L-methionine</keyword>
    <feature type="domain" description="Radical SAM core" evidence="6">
        <location>
            <begin position="88"/>
            <end position="324"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022485"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022691"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023004"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023014"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="PROSITE" id="PS51918"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="ABX35041.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="389" mass="43793" checksum="8FEA31FF6071CCE0" modified="2008-01-15" version="1">MTVFLYSYSMLPSPPTPHHDTARVPLHAIKGRGAASQLAHRFTTDPREAFDDGWGSLEAPAEGEEAAPLRTELRWEQARSALSRHQSPDLPFHMGLNPYRGCEHGCIYCYARPTHSYLGWSPGLDFETRLIAKQNLPELLRAELSRASHVAAPVMLGSVTDCYQPIERELGLTRRLIEVLAEARHPFSIVTKGSGVERDLDLLAPLARQGLASVHITLTTLDADLARHLEPRAAAPHRRLRSIRALTEAGVPVGVSLAPQIPFINEDLEKVLEAAADAGARHAFYAVLRLPWEVAPLFEQWLQVHYPDRARRVMERVRDLHGIQGEQREAGRVYNAEFGQRMKGTGHWAELLRQRFALACRRHGFNREPLRLDCSLYHPSLLLPQRSLF</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="81" xmlns="http://uniprot.org/uniprot">
    <accession>A9BVQ4</accession>
    <name>A9BVQ4_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="7">Cytochrome c oxidase accessory protein CcoG</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ordered locus">Daci_2779</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="8" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX35417.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012204627.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_2779"/>
    <dbReference type="PRIDE" id="A9BVQ4"/>
    <dbReference type="EnsemblBacteria" id="ABX35417">
        <property type="protein sequence ID" value="ABX35417"/>
        <property type="gene ID" value="Daci_2779"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_2779"/>
    <dbReference type="eggNOG" id="COG0348">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_032118_0_0_4"/>
    <dbReference type="OMA" id="EMVFRRI"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051536">
        <property type="term" value="F:iron-sulfur cluster binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.1060.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.40.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017896">
        <property type="entry name" value="4Fe4S_Fe-S-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017900">
        <property type="entry name" value="4Fe4S_Fe_S_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014116">
        <property type="entry name" value="Cyt_c_oxidase_cbb3_FixG"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR032879">
        <property type="entry name" value="FixG_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009051">
        <property type="entry name" value="Helical_ferredxn"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013783">
        <property type="entry name" value="Ig-like_fold"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13746">
        <property type="entry name" value="Fer4_18"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12801">
        <property type="entry name" value="Fer4_5"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF11614">
        <property type="entry name" value="FixG_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR02745">
        <property type="entry name" value="ccoG_rdxA_fixG"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00198">
        <property type="entry name" value="4FE4S_FER_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51379">
        <property type="entry name" value="4FE4S_FER_2"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0408">Iron</keyword>
    <keyword evidence="3" id="KW-0411">Iron-sulfur</keyword>
    <keyword evidence="5" id="KW-0472">Membrane</keyword>
    <keyword evidence="1" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="5" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="5" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="51"/>
            <end position="69"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="98"/>
            <end position="119"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="172"/>
            <end position="192"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="204"/>
            <end position="224"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="352"/>
            <end position="372"/>
        </location>
    </feature>
    <feature type="domain" description="4Fe-4S ferredoxin-type" evidence="6">
        <location>
            <begin position="266"/>
            <end position="297"/>
        </location>
    </feature>
    <feature type="domain" description="4Fe-4S ferredoxin-type" evidence="6">
        <location>
            <begin position="301"/>
            <end position="324"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="4">
        <location>
            <begin position="1"/>
            <end position="23"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023004"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023014"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="PROSITE" id="PS51379"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="ABX35417.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="484" mass="54716" checksum="C66CB33072FD92DF" modified="2008-01-15" version="1">MKPESGDDTGKPPRKVIPITPATPDPGELVSMFESEKKVYPRSISGVFARWRWALVFLTQLVFYGLPWLEWGQRQMVLFDLGARRFYLFGLVLYPQDFIYLAGLLIISALALFLFTAVAGRLWCGFSCPQTVYTEIFMWVERKVEGDRSARMRLDKNGWTFEKAWKKSLKQLLWIAIALWTGFTFVGYFVPIRELGGELLALQGSWQMFWVLFYGFATYGNAGYMREQVCKYMCPYARFQSAMFDRDTMIVSYDTGRGEPRAPRTKKVDYKAQGLGDCIDCKMCVQVCPVGIDIRNGLQYECIGCGLCIDACNSIMDKMEYPRGLIRLTTQNAMAGLWRRAQVLRRIFRPRVLIYSAVLIGLSVAMIVSLALRQSVKVDVIRDRASLSRIVAGGKLENVYRLQIMNATEQAQRYRISAHGLDGLELASEQEVEVGPAETRGIAARLQIPYGSAEPGSHTVFFDIDAVHSGAGRASEKAVFLVPR</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="73" xmlns="http://uniprot.org/uniprot">
    <accession>A9BVZ0</accession>
    <name>A9BVZ0_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Amidase, hydantoinase/carbamoylase family</fullName>
            <ecNumber evidence="5">3.5.1.87</ecNumber>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ordered locus">Daci_2865</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="6" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="3">
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </cofactor>
        <text evidence="3">Binds 2 Zn(2+) ions per subunit.</text>
    </comment>
    <comment type="similarity">
        <text evidence="1">Belongs to the peptidase M20 family.</text>
    </comment>
    <dbReference type="EC" id="3.5.1.87" evidence="5"/>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX35503.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012204713.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_2865"/>
    <dbReference type="PRIDE" id="A9BVZ0"/>
    <dbReference type="EnsemblBacteria" id="ABX35503">
        <property type="protein sequence ID" value="ABX35503"/>
        <property type="gene ID" value="Daci_2865"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_2865"/>
    <dbReference type="eggNOG" id="COG0624">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_024588_2_1_4"/>
    <dbReference type="OMA" id="CLGQKWF"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016813">
        <property type="term" value="F:hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amidines"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0050538">
        <property type="term" value="F:N-carbamoyl-L-amino-acid hydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010158">
        <property type="entry name" value="Amidase_Cbmase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036264">
        <property type="entry name" value="Bact_exopeptidase_dim_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002933">
        <property type="entry name" value="Peptidase_M20"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011650">
        <property type="entry name" value="Peptidase_M20_dimer"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR32494">
        <property type="entry name" value="PTHR32494"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07687">
        <property type="entry name" value="M20_dimer"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01546">
        <property type="entry name" value="Peptidase_M20"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF001235">
        <property type="entry name" value="Amidase_carbamoylase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55031">
        <property type="entry name" value="SSF55031"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01879">
        <property type="entry name" value="hydantase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2 5" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="3" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0862">Zinc</keyword>
    <feature type="domain" description="M20_dimer" evidence="4">
        <location>
            <begin position="219"/>
            <end position="322"/>
        </location>
    </feature>
    <feature type="binding site" evidence="3">
        <location>
            <position position="93"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
            <label>1</label>
        </ligand>
    </feature>
    <feature type="binding site" evidence="3">
        <location>
            <position position="104"/>
        </location>
    </feature>
    <feature type="binding site" evidence="3">
        <location>
            <position position="139"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
            <label>2</label>
        </ligand>
    </feature>
    <feature type="binding site" evidence="3">
        <location>
            <position position="200"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
            <label>1</label>
        </ligand>
    </feature>
    <feature type="binding site" evidence="3">
        <location>
            <position position="392"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
            <label>2</label>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00006153"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="PIRSR" id="PIRSR001235-1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="Pfam" id="PF07687"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="ABX35503.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="421" mass="45237" checksum="1FB1FB409AB9FCDA" modified="2008-01-15" version="1">MDTDTQVKQDIAQLRVNGSRLWDSLMELAQIGATPKGGVCRLTLTDLDRQGRDLVTRWAREAGMTVTIDKIGNGFMRRPGRDNSLPPIMTGSHIDTQPTGGKFDGNYGVLAGLEVVRTLNDHGIETEAPIEVAFWTNEEGSRFVPVMMGSGVFAKAFTLEHAYAATDSEGKTVKGELERIGYVGSQEPGDHPIGAYFESHIEQGPVLEDNARTIGVVTGVLGIRWYDCVVTGMEAHAGPTPMALRKDALQAAAQLMQEVVACAHRHPPHGRGTVGMVQVHPNSRNVIPGQVKFSIDLRNATDADCEAMDADIRAVADRISRETGLPIAINLVSSYPAQPFHADCVDAVARAAKALGYSHMPVVSGAGHDAVYMARLAPAGMVFIPCKDGISHNEIEDATPADITAGCNVLMHAMLERARVL</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="44" xmlns="http://uniprot.org/uniprot">
    <accession>A9BW49</accession>
    <name>A9BW49_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Daci_3227</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="2" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX35865.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_3227"/>
    <dbReference type="PRIDE" id="A9BW49"/>
    <dbReference type="EnsemblBacteria" id="ABX35865">
        <property type="protein sequence ID" value="ABX35865"/>
        <property type="gene ID" value="Daci_3227"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_3227"/>
    <dbReference type="eggNOG" id="ENOG5032T0J">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_074053_1_1_4"/>
    <dbReference type="OMA" id="CQCECGN"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ABX35865.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="172" mass="19585" checksum="F49B50608CAC2463" modified="2008-01-15" version="1">MTAANLSGRVFGRLTAISRAPNQGKHVMWTCGCSCGKEKTVRADHLRSGAVLSCGCYWAQRRVEVNTTHGLSNSRVYRIWKAMCNRCHYEKYPERHLYGGRGITVCERWRNSFENFVADMGIPADHLSIDRIDVNGNYEPGNCRWATALEQAHNKRPKSELGVTFYDLWEGK</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="44" xmlns="http://uniprot.org/uniprot">
    <accession>A9BWK4</accession>
    <name>A9BWK4_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Daci_3900</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="2" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX36531.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012205725.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="PRIDE" id="A9BWK4"/>
    <dbReference type="EnsemblBacteria" id="ABX36531">
        <property type="protein sequence ID" value="ABX36531"/>
        <property type="gene ID" value="Daci_3900"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_3900"/>
    <dbReference type="eggNOG" id="ENOG502Z8SI">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_091700_0_0_4"/>
    <dbReference type="OMA" id="GAIQHAM"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ABX36531.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="267" mass="30260" checksum="9EA9F9F469F146E7" modified="2008-01-15" version="1">MKDSFSRRNGFSQVDEAEITIREDAPQALQEYLIQLSYECGLKPSDLRKIICQTLKVLPDKQNWSERPNIHEENVQRLGQCKWFKVYDVIEQLDDYLGNHNYDSGVYEHFTTELNEFFIEHGIGWKLLGGRIEIRGSESFEQVLTSAKETEHQHGHVTASKELHQAIADLSRRPSPDPTGAIQHAMASLECVARQVTGDQQATLGKIMNDSRTLIPAPLDQAVIKTWAYASEFGRHIQEGREPSFEEAELVVGLCASVSSYLIKKSK</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="33" xmlns="http://uniprot.org/uniprot">
    <accession>A9BWU0</accession>
    <name>A9BWU0_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_3986</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX36617.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012205811.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_3986"/>
    <dbReference type="PRIDE" id="A9BWU0"/>
    <dbReference type="EnsemblBacteria" id="ABX36617">
        <property type="protein sequence ID" value="ABX36617"/>
        <property type="gene ID" value="Daci_3986"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_3986"/>
    <dbReference type="HOGENOM" id="CLU_1966949_0_0_4"/>
    <dbReference type="OMA" id="AYYMATA"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="12"/>
            <end position="31"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="38"/>
            <end position="56"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="68"/>
            <end position="91"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="103"/>
            <end position="123"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX36617.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="127" mass="13759" checksum="60B7FE42464D777D" modified="2008-01-15" version="1">MDSMLSDVVWTMARLATLVGLPALIAWTLVARPSWREPFRLASLVLVPCLITLWFMHDGGLGNGLNRLAYYMATAAFLAAYTGLAAIALLMQRHKKQRAQASLRALCLGALALLAWIASAVAFESLG</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="57" xmlns="http://uniprot.org/uniprot">
    <accession>A9BX14</accession>
    <name>A9BX14_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">YcaO domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Daci_4368</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="4" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX36999.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_4368"/>
    <dbReference type="PRIDE" id="A9BX14"/>
    <dbReference type="EnsemblBacteria" id="ABX36999">
        <property type="protein sequence ID" value="ABX36999"/>
        <property type="gene ID" value="Daci_4368"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_4368"/>
    <dbReference type="eggNOG" id="COG1944">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_020793_0_0_4"/>
    <dbReference type="OMA" id="WRLWALD"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR022291">
        <property type="entry name" value="Bacteriocin_synth_cyclodeHase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003776">
        <property type="entry name" value="YcaO-like_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02624">
        <property type="entry name" value="YcaO"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR03882">
        <property type="entry name" value="cyclo_dehyd_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00702">
        <property type="entry name" value="TIGR00702"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51664">
        <property type="entry name" value="YCAO"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="YcaO" evidence="2">
        <location>
            <begin position="377"/>
            <end position="727"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="622"/>
            <end position="644"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS51664"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ABX36999.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="727" mass="77963" checksum="A61B677720E5F2AC" modified="2008-01-15" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="59" xmlns="http://uniprot.org/uniprot">
    <accession>A9BX17</accession>
    <name>A9BX17_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Glutathione-dependent formaldehyde-activating GFA</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ordered locus">Daci_4371</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="5" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the Gfa family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX37002.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_4371"/>
    <dbReference type="PRIDE" id="A9BX17"/>
    <dbReference type="EnsemblBacteria" id="ABX37002">
        <property type="protein sequence ID" value="ABX37002"/>
        <property type="gene ID" value="Daci_4371"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_4371"/>
    <dbReference type="eggNOG" id="COG3791">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_055491_4_2_4"/>
    <dbReference type="OMA" id="SFYLCHC"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016846">
        <property type="term" value="F:carbon-sulfur lyase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006913">
        <property type="entry name" value="CENP-V/GFA"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011057">
        <property type="entry name" value="Mss4-like_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04828">
        <property type="entry name" value="GFA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51316">
        <property type="entry name" value="SSF51316"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51891">
        <property type="entry name" value="CENP_V_GFA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="CENP-V/GFA" evidence="3">
        <location>
            <begin position="25"/>
            <end position="146"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00005495"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="PROSITE" id="PS51891"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="ABX37002.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="149" mass="16014" checksum="1062397B4E71F2D8" modified="2008-01-15" version="1">MHNGMRLFCARPTMSNAPDSPPLALTGSCLCGAIAYELRSSPKAVSHCHCRICQKAHGAAFATYGSVPAKDLVFTQGQEQLRSFASSPGITRCFCQQCGSSLTWHSAHYAEGAWISVALATLDSELVVGGQRHVNRGVGMGWVDWEEVD</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="74" xmlns="http://uniprot.org/uniprot">
    <accession>A9BX19</accession>
    <name>A9BX19_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="6">TonB-dependent receptor</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ordered locus">Daci_4373</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="7" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the TonB-dependent receptor family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX37004.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012206176.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_4373"/>
    <dbReference type="PRIDE" id="A9BX19"/>
    <dbReference type="EnsemblBacteria" id="ABX37004">
        <property type="protein sequence ID" value="ABX37004"/>
        <property type="gene ID" value="Daci_4373"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_4373"/>
    <dbReference type="eggNOG" id="COG4772">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_390261_0_0_4"/>
    <dbReference type="OMA" id="QLHVRGD"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.170.130.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.170.20">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR039426">
        <property type="entry name" value="BtuB-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037066">
        <property type="entry name" value="Plug_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000531">
        <property type="entry name" value="TonB-dep_rcpt_b-brl"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036942">
        <property type="entry name" value="TonB_rcpt_b-brl_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30069">
        <property type="entry name" value="PTHR30069"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00593">
        <property type="entry name" value="TonB_dep_Rec"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2 6" id="KW-0675">Receptor</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="4">
        <location>
            <begin position="1"/>
            <end position="27"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5002732627" evidence="4">
        <location>
            <begin position="28"/>
            <end position="730"/>
        </location>
    </feature>
    <feature type="domain" description="TonB_dep_Rec" evidence="5">
        <location>
            <begin position="272"/>
            <end position="727"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="3">
        <location>
            <begin position="31"/>
            <end position="55"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="3">
        <location>
            <begin position="398"/>
            <end position="420"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="3">
        <location>
            <begin position="31"/>
            <end position="54"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00009810"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023170"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="Pfam" id="PF00593"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="ABX37004.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="730" mass="79547" checksum="5966FC694CF95865" modified="2008-01-15" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="80" xmlns="http://uniprot.org/uniprot">
    <accession>A9BXA8</accession>
    <name>A9BXA8_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="9">Sec-independent protein translocase protein TatB</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="9" type="primary">tatB</name>
        <name evidence="11" type="ordered locus">Daci_5555</name>
    </gene>
    <organism evidence="11 12">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="11 12" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="12">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="12" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="12">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="9">Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin-arginine motif in their signal peptide across membranes. Together with TatC, TatB is part of a receptor directly interacting with Tat signal peptides. TatB may form an oligomeric binding site that transiently accommodates folded Tat precursor proteins before their translocation.</text>
    </comment>
    <comment type="subunit">
        <text evidence="9">The Tat system comprises two distinct complexes: a TatABC complex, containing multiple copies of TatA, TatB and TatC subunits, and a separate TatA complex, containing only TatA subunits. Substrates initially bind to the TatABC complex, which probably triggers association of the separate TatA complex to form the active translocon.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="9">Cell inner membrane</location>
            <topology evidence="9">Single-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="9">Belongs to the TatB family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX38184.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012207353.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_5555"/>
    <dbReference type="PRIDE" id="A9BXA8"/>
    <dbReference type="EnsemblBacteria" id="ABX38184">
        <property type="protein sequence ID" value="ABX38184"/>
        <property type="gene ID" value="Daci_5555"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_5555"/>
    <dbReference type="eggNOG" id="COG1826">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_086034_1_1_4"/>
    <dbReference type="OMA" id="ARPLWFK"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005887">
        <property type="term" value="C:integral component of plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0033281">
        <property type="term" value="C:TAT protein transport complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008320">
        <property type="term" value="F:protein transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043953">
        <property type="term" value="P:protein transport by the Tat complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00237">
        <property type="entry name" value="TatB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003369">
        <property type="entry name" value="TatA/B/E"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018448">
        <property type="entry name" value="TatB"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02416">
        <property type="entry name" value="TatA_B_E"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01410">
        <property type="entry name" value="tatB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3 9" id="KW-0997">Cell inner membrane</keyword>
    <keyword evidence="2 9" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="8 9" id="KW-0472">Membrane</keyword>
    <keyword evidence="5 9" id="KW-0653">Protein transport</keyword>
    <keyword evidence="12" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="7 9" id="KW-0811">Translocation</keyword>
    <keyword evidence="4 9" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="6 9" id="KW-1133">Transmembrane helix</keyword>
    <keyword evidence="1 9" id="KW-0813">Transport</keyword>
    <feature type="region of interest" description="Disordered" evidence="10">
        <location>
            <begin position="88"/>
            <end position="109"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="10">
        <location>
            <begin position="144"/>
            <end position="165"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022448"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022519"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022927"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023010"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00237"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="EMBL" id="ABX38184.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="165" mass="18079" checksum="5D1B48F82FBD809E" modified="2008-01-15" version="1">MFDIGLSKMALIGAVALVVIGPEKLPRVARTVGTLLGKAQRYVSDVKAEVNRSMELDELRKMKDTVEGAARDVEQSIHTSAANFEKDWNESTASLNGTSSSYDSSSYGSDSDTYSAVAPAYRHPGKNWRLKRAAVPQWYKARAGVRTKAQSGAARVARFRPQKSR</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="71" xmlns="http://uniprot.org/uniprot">
    <accession>A9BXD0</accession>
    <name>A9BXD0_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">Type IV pilus biogenesis and competence protein PilQ</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="13" type="ordered locus">Daci_5577</name>
    </gene>
    <organism evidence="13 14">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="13 14" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="14">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="14" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="14">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="9">Required for type IV pilus biogenesis and competence. Could function as a pore for exit of the pilus but also as a channel for entry of heme and antimicrobial agents and uptake of transforming DNA.</text>
    </comment>
    <comment type="subunit">
        <text evidence="10">Homododecamer. Tetramer of trimer.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="11">Cell outer membrane</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="1">Belongs to the bacterial secretin family. PilQ subfamily.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX38206.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_5577"/>
    <dbReference type="PRIDE" id="A9BXD0"/>
    <dbReference type="EnsemblBacteria" id="ABX38206">
        <property type="protein sequence ID" value="ABX38206"/>
        <property type="gene ID" value="Daci_5577"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_5577"/>
    <dbReference type="eggNOG" id="COG4796">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_006756_0_2_4"/>
    <dbReference type="OMA" id="QNVPWDQ"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009279">
        <property type="term" value="C:cell outer membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030420">
        <property type="term" value="P:establishment of competence for transformation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009306">
        <property type="term" value="P:protein secretion"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.1370.120">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR021731">
        <property type="entry name" value="AMIN_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001775">
        <property type="entry name" value="GspD/PilQ"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005644">
        <property type="entry name" value="NolW-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038591">
        <property type="entry name" value="NolW-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013355">
        <property type="entry name" value="Pilus_4_PilQ"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011662">
        <property type="entry name" value="Secretin/TonB_short_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004846">
        <property type="entry name" value="T2SS/T3SS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004845">
        <property type="entry name" value="T2SS_GspD_CS"/>
    </dbReference>
    <dbReference type="Pfam" id="PF11741">
        <property type="entry name" value="AMIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00263">
        <property type="entry name" value="Secretin"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03958">
        <property type="entry name" value="Secretin_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00811">
        <property type="entry name" value="BCTERIALGSPD"/>
    </dbReference>
    <dbReference type="SMART" id="SM00965">
        <property type="entry name" value="STN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR02515">
        <property type="entry name" value="IV_pilus_PilQ"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00875">
        <property type="entry name" value="T2SP_D"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="7" id="KW-0998">Cell outer membrane</keyword>
    <keyword evidence="8" id="KW-0178">Competence</keyword>
    <keyword evidence="6" id="KW-0472">Membrane</keyword>
    <keyword evidence="5" id="KW-0653">Protein transport</keyword>
    <keyword evidence="14" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4" id="KW-0732">Signal</keyword>
    <keyword evidence="3 11" id="KW-0813">Transport</keyword>
    <feature type="domain" description="STN" evidence="12">
        <location>
            <begin position="302"/>
            <end position="350"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00006304"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00014124"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022448"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022729"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022927"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023237"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00023287"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00024678"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00025897"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="RuleBase" id="RU004004"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="12">
        <source>
            <dbReference type="SMART" id="SM00965"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="13">
        <source>
            <dbReference type="EMBL" id="ABX38206.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="14">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="716" mass="76735" checksum="71D8D58D9184CDC7" modified="2008-01-15" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="77" xmlns="http://uniprot.org/uniprot">
    <accession>A9BXG8</accession>
    <name>A9BXG8_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="4">2OG-Fe(II) oxygenase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ordered locus">Daci_5615</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="5" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="2">Belongs to the iron/ascorbate-dependent oxidoreductase family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX38244.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012207413.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_5615"/>
    <dbReference type="PRIDE" id="A9BXG8"/>
    <dbReference type="EnsemblBacteria" id="ABX38244">
        <property type="protein sequence ID" value="ABX38244"/>
        <property type="gene ID" value="Daci_5615"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_5615"/>
    <dbReference type="eggNOG" id="COG3491">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_010119_6_3_4"/>
    <dbReference type="OMA" id="WHFGQYV"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051213">
        <property type="term" value="F:dioxygenase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.120.330">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR026992">
        <property type="entry name" value="DIOX_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR044861">
        <property type="entry name" value="IPNS-like_FE2OG_OXY"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027443">
        <property type="entry name" value="IPNS-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005123">
        <property type="entry name" value="Oxoglu/Fe-dep_dioxygenase"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03171">
        <property type="entry name" value="2OG-FeII_Oxy"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF14226">
        <property type="entry name" value="DIOX_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51471">
        <property type="entry name" value="FE2OG_OXY"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="1" id="KW-0223">Dioxygenase</keyword>
    <keyword evidence="2" id="KW-0408">Iron</keyword>
    <keyword evidence="2" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="2" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Fe2OG dioxygenase" evidence="3">
        <location>
            <begin position="189"/>
            <end position="289"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022964"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="RuleBase" id="RU003682"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="PROSITE" id="PS51471"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="ABX38244.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="367" mass="39640" checksum="DAF29CFBB796E30C" modified="2008-01-15" version="1">MSTLTASTLEAPAATAATPALPVIDLQALRDPATQAQALRQLARTARDTGFFYLEGHGIGRDAWQGIQRRAREFFAQPLADKQALAIANTRHFRGYTAVGMEITRQRPDQREQIDLGEESPEIPAGPGVPDWKGLQGPNQWPQALPGFREEVLAWQAAAHGVALELLRHFVAALQLPEGALDALVSGLPAHRIKIIHYPGSELGAAGQGVGAHKDGGLLTLLLQDEVGGLQVETPAGWVDVPPRDGAFVINIGEMLELATNGYLRANVHRVLVPRAGVQRYSIAYFLAPRLDLGQVPLLTLPPELAVLATGPQSDPDNPLFSHVGENALKGRVRSHLDVAQRFYPEHFARLQAQARAAGRELHPGAY</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="56" xmlns="http://uniprot.org/uniprot">
    <accession>A9BXI4</accession>
    <name>A9BXI4_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">5-oxoprolinase (ATP-hydrolyzing)</fullName>
            <ecNumber evidence="2">3.5.2.9</ecNumber>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_5631</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EC" id="3.5.2.9" evidence="2"/>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX38260.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012207429.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_5631"/>
    <dbReference type="PRIDE" id="A9BXI4"/>
    <dbReference type="EnsemblBacteria" id="ABX38260">
        <property type="protein sequence ID" value="ABX38260"/>
        <property type="gene ID" value="Daci_5631"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_5631"/>
    <dbReference type="eggNOG" id="COG0146">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_020413_1_1_4"/>
    <dbReference type="OMA" id="NAQYGAC"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0017168">
        <property type="term" value="F:5-oxoprolinase (ATP-hydrolyzing) activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003692">
        <property type="entry name" value="Hydantoinase_B"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045079">
        <property type="entry name" value="Oxoprolinase_fam"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11365">
        <property type="entry name" value="PTHR11365"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02538">
        <property type="entry name" value="Hydantoinase_B"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Hydantoinase_B" evidence="1">
        <location>
            <begin position="11"/>
            <end position="532"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF02538"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX38260.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="598" mass="65034" checksum="567A4B153197F916" modified="2008-01-15" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="87" xmlns="http://uniprot.org/uniprot">
    <accession>A9BXM0</accession>
    <name>A9BXM0_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="9">Oligopeptide/dipeptide ABC transporter, ATPase subunit</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="9" type="ordered locus">Daci_5668</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="9 10" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="10" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX38296.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012207465.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_5668"/>
    <dbReference type="PRIDE" id="A9BXM0"/>
    <dbReference type="EnsemblBacteria" id="ABX38296">
        <property type="protein sequence ID" value="ABX38296"/>
        <property type="gene ID" value="Daci_5668"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_5668"/>
    <dbReference type="eggNOG" id="COG0444">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_000604_1_23_4"/>
    <dbReference type="OMA" id="MSSLNPC"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015833">
        <property type="term" value="P:peptide transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003593">
        <property type="entry name" value="AAA+_ATPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003439">
        <property type="entry name" value="ABC_transporter-like_ATP-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017871">
        <property type="entry name" value="ABC_transporter-like_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013563">
        <property type="entry name" value="Oligopep_ABC_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00005">
        <property type="entry name" value="ABC_tran"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08352">
        <property type="entry name" value="oligo_HPY"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00382">
        <property type="entry name" value="AAA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01727">
        <property type="entry name" value="oligo_HPY"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00211">
        <property type="entry name" value="ABC_TRANSPORTER_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50893">
        <property type="entry name" value="ABC_TRANSPORTER_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4 7" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="2" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="6" id="KW-0472">Membrane</keyword>
    <keyword evidence="3 7" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="5" id="KW-1278">Translocase</keyword>
    <keyword evidence="1" id="KW-0813">Transport</keyword>
    <feature type="domain" description="ABC transporter" evidence="8">
        <location>
            <begin position="8"/>
            <end position="259"/>
        </location>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <begin position="44"/>
            <end position="51"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022448"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022967"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00434"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="PROSITE" id="PS50893"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="ABX38296.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="342" mass="36789" checksum="751DB643542E5BE9" modified="2008-01-15" version="1">MDTDTLLLQVSGLRVAFQGRRGQATVLNGVDFDLRAGETLCVVGESGCGKSMTALALLRLIPSPPGRITGGQVRFQGEDLVAAGEAHMRQVRGNRISMIFQEPMTSLNPVLTVGEQIAEPLRLHAGLDAGAARQRAVEMLRQVGIPAPERRVHEYPHQLSGGMRQRVMIAMALACRPDILIADEPTTALDVTVQAQIFDLLRELQRDKGTAIVLITHDMGAVAEMADRVMVMYAGRVIEQGRCEQVLSAPAHPYTRGLIACLPELGSSQAGGRTELPEIPGVVPSIWELGSGCAFRARCREAQPRCASEAPPLVALDDPSHGVACWLHAPATRIRAHTEALA</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="70" xmlns="http://uniprot.org/uniprot">
    <accession>A9BXU3</accession>
    <name>A9BXU3_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="4">Efflux pump membrane transporter</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="5" type="ordered locus">Daci_5741</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="6" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="2 4">Cell inner membrane</location>
            <topology evidence="2 4">Multi-pass membrane protein</topology>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="3 4">Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.</text>
    </comment>
    <comment type="caution">
        <text evidence="4">Lacks conserved residue(s) required for the propagation of feature annotation.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX38369.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012207538.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_5741"/>
    <dbReference type="PRIDE" id="A9BXU3"/>
    <dbReference type="EnsemblBacteria" id="ABX38369">
        <property type="protein sequence ID" value="ABX38369"/>
        <property type="gene ID" value="Daci_5741"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_5741"/>
    <dbReference type="eggNOG" id="COG0841">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_002755_1_1_4"/>
    <dbReference type="OMA" id="APAMCAS"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015562">
        <property type="term" value="F:efflux transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0042908">
        <property type="term" value="P:xenobiotic transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.2090.10">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027463">
        <property type="entry name" value="AcrB_DN_DC_subdom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001036">
        <property type="entry name" value="Acrflvin-R"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004764">
        <property type="entry name" value="HAE1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR32063">
        <property type="entry name" value="PTHR32063"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00873">
        <property type="entry name" value="ACR_tran"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00702">
        <property type="entry name" value="ACRIFLAVINRP"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF82714">
        <property type="entry name" value="SSF82714"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00915">
        <property type="entry name" value="2A0602"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-0997">Cell inner membrane</keyword>
    <keyword evidence="4" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="4" id="KW-0472">Membrane</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="4" id="KW-1133">Transmembrane helix</keyword>
    <keyword evidence="4" id="KW-0813">Transport</keyword>
    <feature type="transmembrane region" description="Helical" evidence="4">
        <location>
            <begin position="340"/>
            <end position="359"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="4">
        <location>
            <begin position="366"/>
            <end position="390"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="4">
        <location>
            <begin position="396"/>
            <end position="417"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="4">
        <location>
            <begin position="438"/>
            <end position="458"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="4">
        <location>
            <begin position="470"/>
            <end position="497"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="4">
        <location>
            <begin position="539"/>
            <end position="557"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="4">
        <location>
            <begin position="866"/>
            <end position="885"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="4">
        <location>
            <begin position="892"/>
            <end position="912"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="4">
        <location>
            <begin position="918"/>
            <end position="939"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="4">
        <location>
            <begin position="967"/>
            <end position="987"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="4">
        <location>
            <begin position="999"/>
            <end position="1022"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00004429"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00010942"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="RuleBase" id="RU364070"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="ABX38369.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="1046" mass="111814" checksum="0920B502CF9C4037" modified="2008-01-15" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="79" xmlns="http://uniprot.org/uniprot">
    <accession>A9BXY4</accession>
    <name>A9BXY4_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="4 5">dTDP-glucose 4,6-dehydratase</fullName>
            <ecNumber evidence="4 5">4.2.1.46</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="7" type="ordered locus">Daci_1275</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="8" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="1 5">
            <text>dTDP-alpha-D-glucose = dTDP-4-dehydro-6-deoxy-alpha-D-glucose + H2O</text>
            <dbReference type="Rhea" id="RHEA:17221"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:57477"/>
            <dbReference type="ChEBI" id="CHEBI:57649"/>
            <dbReference type="EC" id="4.2.1.46"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="2 5">
            <name>NAD(+)</name>
            <dbReference type="ChEBI" id="CHEBI:57540"/>
        </cofactor>
    </comment>
    <comment type="similarity">
        <text evidence="3 5">Belongs to the NAD(P)-dependent epimerase/dehydratase family. dTDP-glucose dehydratase subfamily.</text>
    </comment>
    <dbReference type="EC" id="4.2.1.46" evidence="4 5"/>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX33919.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012203205.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_1275"/>
    <dbReference type="PRIDE" id="A9BXY4"/>
    <dbReference type="EnsemblBacteria" id="ABX33919">
        <property type="protein sequence ID" value="ABX33919"/>
        <property type="gene ID" value="Daci_1275"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_1275"/>
    <dbReference type="eggNOG" id="COG1088">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_007383_1_14_4"/>
    <dbReference type="OMA" id="EWCQHVQ"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008460">
        <property type="term" value="F:dTDP-glucose 4,6-dehydratase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009225">
        <property type="term" value="P:nucleotide-sugar metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd05246">
        <property type="entry name" value="dTDP_GD_SDR_e"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005888">
        <property type="entry name" value="dTDP_Gluc_deHydtase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016040">
        <property type="entry name" value="NAD(P)-bd_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036291">
        <property type="entry name" value="NAD(P)-bd_dom_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF16363">
        <property type="entry name" value="GDP_Man_Dehyd"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51735">
        <property type="entry name" value="SSF51735"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01181">
        <property type="entry name" value="dTDP_gluc_dehyt"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-0456">Lyase</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="NAD(P)-bd_dom" evidence="6">
        <location>
            <begin position="3"/>
            <end position="323"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001539"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00001911"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00008178"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00011990"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="RuleBase" id="RU004473"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="Pfam" id="PF16363"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="ABX33919.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="356" mass="39480" checksum="9ACBDEA172786264" modified="2008-01-15" version="1">MILVTGGAGFIGANFVLDWLAAGDEPVLNVDKLTYAGNLKSLESLQGDARHVFVQADIGDGQTLARLLAEHRPRAVVNFAAESHVDRSIHGPEDFIQTNVVGTFRLLEAVRGYWSALDAEAKAAFRFLHVSTDEVYGSLAPAAPAFTEDHLYEPNSPYSASKAASDHLVRAWHHTYGLPVLTTNCSNNYGPLHFPEKLIPLMIVNALAGKPLPIYGDGMQVRDWLYVRDHCSAIRRVLEAGRLGDTYNVGGWNEKPNVEIVNTVCALLDELRPKADGTSYSAQITYVKDRPGHDRRYAIDARKLERELGWKPAETFETGIRKTVQWYLDNPEWVADVQSGAYREWVSRQYTDGAGA</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="57" xmlns="http://uniprot.org/uniprot">
    <accession>A9BY13</accession>
    <name>A9BY13_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="1">General secretion pathway protein J</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Daci_1304</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="2" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX33948.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012203234.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_1304"/>
    <dbReference type="PRIDE" id="A9BY13"/>
    <dbReference type="EnsemblBacteria" id="ABX33948">
        <property type="protein sequence ID" value="ABX33948"/>
        <property type="gene ID" value="Daci_1304"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_1304"/>
    <dbReference type="eggNOG" id="COG4795">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_101359_1_0_4"/>
    <dbReference type="OMA" id="LPQWEWH"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012902">
        <property type="entry name" value="N_methyl_site"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045584">
        <property type="entry name" value="Pilin-like"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07963">
        <property type="entry name" value="N_methyl"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54523">
        <property type="entry name" value="SSF54523"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR02532">
        <property type="entry name" value="IV_pilin_GFxxxE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00409">
        <property type="entry name" value="PROKAR_NTER_METHYL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ABX33948.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="226" mass="24543" checksum="42EB7BA0652F8131" modified="2008-01-15" version="1">MTGRAPSSGRQKGFTLVELLVVMALLSLLMLGLASAMSTVSQTQERVDARLDRMDHQRVSIGFLRSVLGQVSAVRRQAGLRKQGESELFFEGGPQGMRWLGIMPARFGMGGRTHFQLSVEGDALVLRFAPWQGPDVMPDWGQSQSYVIDRGVTAFALRYQNAKLGVAHWQPQWGPEKDNEKELPSAVDVQVQTSAGAWPLTVVAMRATASTSPDAGARAVFGGSRS</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="87" xmlns="http://uniprot.org/uniprot">
    <accession>A9BY48</accession>
    <name>A9BY48_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">3-hydroxyacyl-CoA dehydrogenase</fullName>
            <ecNumber evidence="2">1.1.1.35</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="10" type="ordered locus">Daci_1339</name>
    </gene>
    <organism evidence="10 11">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="10 11" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="11">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="11" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="11">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="7">
            <text>a (3S)-3-hydroxyacyl-CoA + NAD(+) = a 3-oxoacyl-CoA + H(+) + NADH</text>
            <dbReference type="Rhea" id="RHEA:22432"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:57318"/>
            <dbReference type="ChEBI" id="CHEBI:57540"/>
            <dbReference type="ChEBI" id="CHEBI:57945"/>
            <dbReference type="ChEBI" id="CHEBI:90726"/>
            <dbReference type="EC" id="1.1.1.35"/>
        </reaction>
    </comment>
    <comment type="pathway">
        <text evidence="1">Lipid metabolism; fatty acid beta-oxidation.</text>
    </comment>
    <dbReference type="EC" id="1.1.1.35" evidence="2"/>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX33983.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012203269.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_1339"/>
    <dbReference type="PRIDE" id="A9BY48"/>
    <dbReference type="EnsemblBacteria" id="ABX33983">
        <property type="protein sequence ID" value="ABX33983"/>
        <property type="gene ID" value="Daci_1339"/>
    </dbReference>
    <dbReference type="GeneID" id="60685897"/>
    <dbReference type="KEGG" id="dac:Daci_1339"/>
    <dbReference type="eggNOG" id="COG1024">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="eggNOG" id="COG1250">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_010448_0_0_4"/>
    <dbReference type="OMA" id="GQGFYKK"/>
    <dbReference type="UniPathway" id="UPA00659"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003857">
        <property type="term" value="F:3-hydroxyacyl-CoA dehydrogenase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0070403">
        <property type="term" value="F:NAD+ binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006635">
        <property type="term" value="P:fatty acid beta-oxidation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniPathway"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006176">
        <property type="entry name" value="3-OHacyl-CoA_DH_NAD-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006108">
        <property type="entry name" value="3HC_DH_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008927">
        <property type="entry name" value="6-PGluconate_DH-like_C_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029045">
        <property type="entry name" value="ClpP/crotonase-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001753">
        <property type="entry name" value="Enoyl-CoA_hydra/iso"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036291">
        <property type="entry name" value="NAD(P)-bd_dom_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00725">
        <property type="entry name" value="3HCDH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02737">
        <property type="entry name" value="3HCDH_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00378">
        <property type="entry name" value="ECH_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48179">
        <property type="entry name" value="SSF48179"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51735">
        <property type="entry name" value="SSF51735"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52096">
        <property type="entry name" value="SSF52096"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-0276">Fatty acid metabolism</keyword>
    <keyword evidence="4" id="KW-0442">Lipid degradation</keyword>
    <keyword evidence="6" id="KW-0443">Lipid metabolism</keyword>
    <keyword evidence="5" id="KW-0520">NAD</keyword>
    <keyword evidence="11" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="3HCDH_N" evidence="9">
        <location>
            <begin position="8"/>
            <end position="191"/>
        </location>
    </feature>
    <feature type="domain" description="3HCDH" evidence="8">
        <location>
            <begin position="194"/>
            <end position="295"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00005005"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00013000"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022832"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022963"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023027"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023098"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023693"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="Pfam" id="PF00725"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="9">
        <source>
            <dbReference type="Pfam" id="PF02737"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="EMBL" id="ABX33983.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="800" mass="86186" checksum="14366077C283E03C" modified="2008-01-15" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2021-06-02" version="43" xmlns="http://uniprot.org/uniprot">
    <accession>A9BY62</accession>
    <name>A9BY62_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Daci_1557</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="2" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX34201.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012203487.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_1557"/>
    <dbReference type="EnsemblBacteria" id="ABX34201">
        <property type="protein sequence ID" value="ABX34201"/>
        <property type="gene ID" value="Daci_1557"/>
    </dbReference>
    <dbReference type="GeneID" id="60686095"/>
    <dbReference type="KEGG" id="dac:Daci_1557"/>
    <dbReference type="eggNOG" id="COG4317">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_171061_0_0_4"/>
    <dbReference type="OMA" id="FASACDK"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009872">
        <property type="entry name" value="DUF1427"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020017">
        <property type="entry name" value="XapX_domain"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07235">
        <property type="entry name" value="DUF1427"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR03510">
        <property type="entry name" value="XapX"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ABX34201.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="90" mass="9401" checksum="2B984769CADBFCEA" modified="2008-01-15" version="1">MKLYALSLGAGLLVGVVYSLLQVRSPAPPLVALVGLLGILAGEQIVPVGRHLLQGMDLRSACSKTQATEHVLGQLPGRKNADADADRHHG</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="93" xmlns="http://uniprot.org/uniprot">
    <accession>A9BYA3</accession>
    <name>A9BYA3_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">Histidine kinase</fullName>
            <ecNumber evidence="2">2.7.13.3</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="9" type="ordered locus">Daci_1598</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="9 10" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="10" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>ATP + protein L-histidine = ADP + protein N-phospho-L-histidine.</text>
            <dbReference type="EC" id="2.7.13.3"/>
        </reaction>
    </comment>
    <dbReference type="EC" id="2.7.13.3" evidence="2"/>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX34242.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012203527.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_1598"/>
    <dbReference type="PRIDE" id="A9BYA3"/>
    <dbReference type="EnsemblBacteria" id="ABX34242">
        <property type="protein sequence ID" value="ABX34242"/>
        <property type="gene ID" value="Daci_1598"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_1598"/>
    <dbReference type="eggNOG" id="COG0642">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_000445_89_37_4"/>
    <dbReference type="OMA" id="FPWLRPT"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000155">
        <property type="term" value="F:phosphorelay sensor kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd00082">
        <property type="entry name" value="HisKA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.565.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003660">
        <property type="entry name" value="HAMP_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003594">
        <property type="entry name" value="HATPase_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036890">
        <property type="entry name" value="HATPase_C_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005467">
        <property type="entry name" value="His_kinase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003661">
        <property type="entry name" value="HisK_dim/P"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036097">
        <property type="entry name" value="HisK_dim/P_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004358">
        <property type="entry name" value="Sig_transdc_His_kin-like_C"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02518">
        <property type="entry name" value="HATPase_c"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00512">
        <property type="entry name" value="HisKA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00344">
        <property type="entry name" value="BCTRLSENSOR"/>
    </dbReference>
    <dbReference type="SMART" id="SM00387">
        <property type="entry name" value="HATPase_c"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00388">
        <property type="entry name" value="HisKA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47384">
        <property type="entry name" value="SSF47384"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55874">
        <property type="entry name" value="SSF55874"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50885">
        <property type="entry name" value="HAMP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50109">
        <property type="entry name" value="HIS_KIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="5 9" id="KW-0418">Kinase</keyword>
    <keyword evidence="6" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-0597">Phosphoprotein</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4" id="KW-0808">Transferase</keyword>
    <keyword evidence="6" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="6" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="28"/>
            <end position="48"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="161"/>
            <end position="184"/>
        </location>
    </feature>
    <feature type="domain" description="HAMP" evidence="8">
        <location>
            <begin position="185"/>
            <end position="237"/>
        </location>
    </feature>
    <feature type="domain" description="Histidine kinase" evidence="7">
        <location>
            <begin position="245"/>
            <end position="485"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00000085"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00012438"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022553"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022777"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="PROSITE" id="PS50109"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="PROSITE" id="PS50885"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="ABX34242.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="487" mass="52190" checksum="8F9416E798A320C7" modified="2008-01-15" version="1">MKAPASSLVSSLVARARSRLPGALGTRLLLFLGAAIVLTALLQGLLAYRNALLQTDTLFDYQMQQTAFALRAGLPVDARGRPQGTPPEDENHEFIVQVWTNEGLRIFESALGAALPQMAVLGFADVPARGTVYRVFSLQTRSQVIQVAQDMRVRRTLARDAAWQSLLPIALLAPVLALAVWWVVRSSLAPVQRVRRELATRRPQDLAPVPAEGLPDEVRPLVAELNALLQRVGQAFEAQQHFVADAAHELRSPLAALKLQLVALQRAPDVAAHDEAVQRLSAGIDRATRLVEQLLTLARQEAQGTVQGTAPGLQGMQGQHGAAAAAPADVDLREVVEQALADQAVAAQQHGLDMGLSESPQLRQSFAVAGDAQSLQMLVRNLLDNAVKYVPQGGRVDVGWRSDAQGRALVVEDSGPGIAESERELVLRRFVRGPSATSAGQQAQGSGLGLAIVQTIAERHGARLLLDCSPTLGGLRVQVMWPPVSGR</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="43" xmlns="http://uniprot.org/uniprot">
    <accession>A9BYF8</accession>
    <name>A9BYF8_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Daci_1654</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="2" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX34297.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012203582.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_1654"/>
    <dbReference type="PRIDE" id="A9BYF8"/>
    <dbReference type="EnsemblBacteria" id="ABX34297">
        <property type="protein sequence ID" value="ABX34297"/>
        <property type="gene ID" value="Daci_1654"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_1654"/>
    <dbReference type="eggNOG" id="ENOG5033IZZ">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_149341_1_0_4"/>
    <dbReference type="OMA" id="ECREPIP"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ABX34297.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="94" mass="10225" checksum="C5A73DF6710060B6" modified="2008-01-15" version="1">MMRAILLLAALALAGCGSVPRVEIQEVKVPVPVECREPIPDRPAMPTDGLADDADPFELLRAALAEIDRREGYEVRLLAALMACTQPLSRTMQP</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-05-25" version="60" xmlns="http://uniprot.org/uniprot">
    <accession>A9BYJ9</accession>
    <name>A9BYJ9_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="7">Major facilitator superfamily MFS_1</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ordered locus">Daci_1902</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="8" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX34542.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012203827.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_1902"/>
    <dbReference type="EnsemblBacteria" id="ABX34542">
        <property type="protein sequence ID" value="ABX34542"/>
        <property type="gene ID" value="Daci_1902"/>
    </dbReference>
    <dbReference type="GeneID" id="60686322"/>
    <dbReference type="KEGG" id="dac:Daci_1902"/>
    <dbReference type="eggNOG" id="COG2271">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_001265_59_9_4"/>
    <dbReference type="OMA" id="YGMTEVQ"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0022857">
        <property type="term" value="F:transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.1250.20">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011701">
        <property type="entry name" value="MFS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020846">
        <property type="entry name" value="MFS_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036259">
        <property type="entry name" value="MFS_trans_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07690">
        <property type="entry name" value="MFS_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF103473">
        <property type="entry name" value="SSF103473"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50850">
        <property type="entry name" value="MFS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4 5" id="KW-0472">Membrane</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 5" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="3 5" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="20"/>
            <end position="41"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="61"/>
            <end position="79"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="86"/>
            <end position="106"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="112"/>
            <end position="133"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="145"/>
            <end position="168"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="174"/>
            <end position="196"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="239"/>
            <end position="258"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="270"/>
            <end position="294"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="306"/>
            <end position="322"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="328"/>
            <end position="350"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="362"/>
            <end position="385"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="397"/>
            <end position="415"/>
        </location>
    </feature>
    <feature type="domain" description="MFS" evidence="6">
        <location>
            <begin position="17"/>
            <end position="420"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="PROSITE" id="PS50850"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="ABX34542.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="427" mass="45612" checksum="E33FC9D5C1ABE801" modified="2008-01-15" version="1">MLSNSTARWLQRRGIHYGWLVAAITFLTMLTMSAALGLPGAMLQPLSREFGWSTEQISSSLALRFALFGLLGPFAAVMMERFGLRAVMCMGLALVGGAMAMVTQATQLWHLFLLWSLLLGMGTGLTALVLGAVVANRWFAARRGLVIGVLTASAATGQLAFLPLAAWMIEHWGWRSATVPVFVASALIAVLALLFVRDRPSDLGLAPFGGDASAPPPPAMAMNFGTPFKVLAEAARNRTFWLLAGTFFICGLSTNGLVQTHFISLCGDNGMGAVPAASVLAMMGAFDFVGTVLSGWLSDRYDNRKLLFWYYGLRGLSLFWLPHSEFTFYGLGLFAMFYGLDWIATVPPTVKLTAQHFGPQKVGLVFGWIFAAHQLGAATAAWGAGLTRTLLLTYTPALYAAGLACLVAAVMALVIGRARKAAAVAAA</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="31" xmlns="http://uniprot.org/uniprot">
    <accession>A9BYL5</accession>
    <name>A9BYL5_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Daci_1918</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="2" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX34558.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012203843.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_1918"/>
    <dbReference type="PRIDE" id="A9BYL5"/>
    <dbReference type="EnsemblBacteria" id="ABX34558">
        <property type="protein sequence ID" value="ABX34558"/>
        <property type="gene ID" value="Daci_1918"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_1918"/>
    <dbReference type="HOGENOM" id="CLU_2914867_0_0_4"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ABX34558.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="61" mass="6970" checksum="7C3ABD7EF4A887CD" modified="2008-01-15" version="1">MSKLTETEQATLKMDVFRMARDGGYTRAEPLIRDALKLYPKASRDEIKDALLVVLKMKEPS</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="44" xmlns="http://uniprot.org/uniprot">
    <accession>A9BYM8</accession>
    <name>A9BYM8_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_1931</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX34571.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012203856.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_1931"/>
    <dbReference type="PRIDE" id="A9BYM8"/>
    <dbReference type="EnsemblBacteria" id="ABX34571">
        <property type="protein sequence ID" value="ABX34571"/>
        <property type="gene ID" value="Daci_1931"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_1931"/>
    <dbReference type="eggNOG" id="ENOG5030546">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_069737_0_0_4"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="139"/>
            <end position="177"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="237"/>
            <end position="258"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="153"/>
            <end position="167"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="237"/>
            <end position="251"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX34571.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="258" mass="29017" checksum="EDEF9DA0EFA0C286" modified="2008-01-15" version="1">MRDYGMVSPRFWIGETGKALRGNADAQVLALYLVTSPHANMIGVFHCPVLYMAHDTGLSMEGASKALQCLIKAGYCTYDEANETVFVHRMAAYQIGEALAPADKRCKGVEREWLNIASHSLQAAFFAMYSDVYHLEKQSKKTSPSEAPSKAHASQEQEQEQEHVEAPSAKSPRGTALAADWTLPDDWKTWAEKERPDLDMAKVGDSFRDFWIAKPGKDGRKADWHATWRNWVRNQRQGQGYQHTQVNGRADTAPRNFV</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-01-19" version="64" xmlns="http://uniprot.org/uniprot">
    <accession>A9BYV5</accession>
    <name>A9BYV5_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="7">LrgA family protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ordered locus">Daci_2210</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="8" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX34850.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012204133.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_2210"/>
    <dbReference type="EnsemblBacteria" id="ABX34850">
        <property type="protein sequence ID" value="ABX34850"/>
        <property type="gene ID" value="Daci_2210"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_2210"/>
    <dbReference type="eggNOG" id="COG1380">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_113736_4_2_4"/>
    <dbReference type="OMA" id="PGPLIGM"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005538">
        <property type="entry name" value="LrgA/CidA"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33931">
        <property type="entry name" value="PTHR33931"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03788">
        <property type="entry name" value="LrgA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="5 6" id="KW-0472">Membrane</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 6" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="4 6" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="27"/>
            <end position="44"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="56"/>
            <end position="74"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="86"/>
            <end position="105"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="ABX34850.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="125" mass="13555" checksum="4A6E58284B5AD4C3" modified="2008-01-15" version="1">MLYAITALFAFQLLGEAIVQLTGLPLPGALVGTLLLLAALLLHGRLPESLEKAAGVLLQNMMLLFIPVIAGVMLEFDRLSREWQPFVIACVAGAAITFLATAFTFRWCLERQRAREAAASRGDKA</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-05-25" version="64" xmlns="http://uniprot.org/uniprot">
    <accession>A9BZ18</accession>
    <name>A9BZ18_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Major facilitator superfamily MFS_1</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_2480</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX35118.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012204399.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_2480"/>
    <dbReference type="EnsemblBacteria" id="ABX35118">
        <property type="protein sequence ID" value="ABX35118"/>
        <property type="gene ID" value="Daci_2480"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_2480"/>
    <dbReference type="eggNOG" id="COG0477">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_034180_11_0_4"/>
    <dbReference type="OMA" id="TPDDMRG"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.1250.20">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036259">
        <property type="entry name" value="MFS_trans_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010290">
        <property type="entry name" value="TM_effector"/>
    </dbReference>
    <dbReference type="Pfam" id="PF05977">
        <property type="entry name" value="MFS_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF103473">
        <property type="entry name" value="SSF103473"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="89"/>
            <end position="107"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="119"/>
            <end position="138"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="191"/>
            <end position="210"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="216"/>
            <end position="243"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="264"/>
            <end position="290"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="331"/>
            <end position="353"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="412"/>
            <end position="438"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX35118.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="457" mass="48381" checksum="C52BD86610F44B68" modified="2008-01-15" version="1">MPSSAGWSGHNGQQGAGISQILRVLLHGYPILPSSPLPPSSADSPAAGLRSSAFVPFVMARMLSMFAQQMQAVVVAWQVYDLTRDPMSLAYVGLAQFLPMLALLIPAGDLSDRMSRKRLLSGSWTVAALCSLLLLWLSWHEGAAAHDVHWIYAVLVLFGCSRAFTGPALQSLLPQIVPREQLAQALATNSMLMRTAAIAAPVLGGVLYAWGGAVLTYAVCGVSLVLAVLLLGTVPVRFAGAMAPAGGSLWQRFGEGIHFIRTRPIILGTISLDLFAVLLGGVVALLPVYAHEVLKVGPEGLGLLRSSMTVGEVAMGLWLSARPIQRHVGRVMFAAVAIFGVANLVFALSHWFWLSIAALMLAGAADMVSVYIRSALVQFSTPDSMRGRVNAVNMLFIGSSNELGEFRAGTSAAWLGAVPAAVVGSLCTLGVVGSWMTLFKPLRDVDRLEDAARVGQG</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="80" xmlns="http://uniprot.org/uniprot">
    <accession>A9BZP2</accession>
    <name>A9BZP2_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="8">ABC transporter related</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="8" type="ordered locus">Daci_3312</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="9" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="6">Lacks conserved residue(s) required for the propagation of feature annotation.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX35950.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012205150.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_3312"/>
    <dbReference type="PRIDE" id="A9BZP2"/>
    <dbReference type="EnsemblBacteria" id="ABX35950">
        <property type="protein sequence ID" value="ABX35950"/>
        <property type="gene ID" value="Daci_3312"/>
    </dbReference>
    <dbReference type="GeneID" id="60687567"/>
    <dbReference type="KEGG" id="dac:Daci_3312"/>
    <dbReference type="eggNOG" id="COG0410">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_000604_1_2_4"/>
    <dbReference type="OMA" id="YVMGHGQ"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003593">
        <property type="entry name" value="AAA+_ATPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003439">
        <property type="entry name" value="ABC_transporter-like_ATP-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017871">
        <property type="entry name" value="ABC_transporter-like_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00005">
        <property type="entry name" value="ABC_tran"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00382">
        <property type="entry name" value="AAA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00211">
        <property type="entry name" value="ABC_TRANSPORTER_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50893">
        <property type="entry name" value="ABC_TRANSPORTER_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3 6" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="1" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="5" id="KW-0472">Membrane</keyword>
    <keyword evidence="2 6" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4" id="KW-1278">Translocase</keyword>
    <feature type="domain" description="ABC transporter" evidence="7">
        <location>
            <begin position="2"/>
            <end position="231"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022967"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00434"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="PROSITE" id="PS50893"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="ABX35950.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="231" mass="25647" checksum="721B51849A7D1F37" modified="2008-01-15" version="1">MLNINNLHAYYGKSHVLHGVDFSVQPGEIVALLGRNGSGRSTTAKAIMGLVHWEGSLDWKGQSLTGRKAYEIAHLGVGYVPESRDVFPNLTVHQNLLLGQKGKGRDSRWGFDDMYAMFPRLKERQHTEAGVMSGGEQQMLTLCRTLMGDPDLIIIDEPTEGLAPKIVELVGEYLQKIKQRGVSVLLIEQKLTIAMSISDRALVMGHGRIVFDGTPDGLRADQKVRKEWLEV</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2021-06-02" version="35" xmlns="http://uniprot.org/uniprot">
    <accession>A9BZR2</accession>
    <name>A9BZR2_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_3332</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX35970.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012205170.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_3332"/>
    <dbReference type="EnsemblBacteria" id="ABX35970">
        <property type="protein sequence ID" value="ABX35970"/>
        <property type="gene ID" value="Daci_3332"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_3332"/>
    <dbReference type="eggNOG" id="ENOG502ZW3K">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_1692618_0_0_4"/>
    <dbReference type="OMA" id="YEWNINA"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="1">
        <location>
            <begin position="1"/>
            <end position="32"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5002732709" evidence="1">
        <location>
            <begin position="33"/>
            <end position="153"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX35970.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="153" mass="16289" checksum="46018A8EF22B9A06" modified="2008-01-15" version="1">MPSSQLFNNPSRSLRIAAWAAVMLCLHAPLQASSTSTSTPKHAAKAAPISVIGPVTRSVGTGETMGCEKVSLDAADVARYFATAKQVSAGSFHEESIILPCSFSGRLLRSGKVYEWNINAAGAGYLRSEDGEQDLRYLCRKACEKALPQLTGL</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="92" xmlns="http://uniprot.org/uniprot">
    <accession>A9BZR7</accession>
    <name>A9BZR7_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="8">ABC transporter related</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="8" type="ordered locus">Daci_3337</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="9" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX35975.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012205175.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_3337"/>
    <dbReference type="EnsemblBacteria" id="ABX35975">
        <property type="protein sequence ID" value="ABX35975"/>
        <property type="gene ID" value="Daci_3337"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_3337"/>
    <dbReference type="eggNOG" id="COG3638">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_000604_1_22_4"/>
    <dbReference type="OMA" id="IGTLWQD"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015416">
        <property type="term" value="F:ABC-type phosphonate transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd03256">
        <property type="entry name" value="ABC_PhnC_transporter"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003593">
        <property type="entry name" value="AAA+_ATPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003439">
        <property type="entry name" value="ABC_transporter-like_ATP-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017871">
        <property type="entry name" value="ABC_transporter-like_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012693">
        <property type="entry name" value="ABC_transpr_PhnC"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00005">
        <property type="entry name" value="ABC_tran"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00382">
        <property type="entry name" value="AAA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00211">
        <property type="entry name" value="ABC_TRANSPORTER_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50893">
        <property type="entry name" value="ABC_TRANSPORTER_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3 6" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="1" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="5" id="KW-0472">Membrane</keyword>
    <keyword evidence="2 6" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4" id="KW-1278">Translocase</keyword>
    <feature type="domain" description="ABC transporter" evidence="7">
        <location>
            <begin position="3"/>
            <end position="247"/>
        </location>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <begin position="36"/>
            <end position="43"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022967"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00434"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="PROSITE" id="PS50893"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="ABX35975.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="274" mass="28269" checksum="980D93AAB30DFAFF" modified="2008-01-15" version="1">MSFELEGVGLTHAGGGIALRGVTLAARQGEAIALIGPSGAGKTTLLSVIGTALAPSQGRRSVLGNEVPASSAGAPRLLRARIGTVHQAPPIPPRQRVVTAVLAGRLGRWPAWKALASLLYPQDTAGAREALARVQLADKLFARCDQLSGGQLQRVGIARVLYQQAELILADEPVAALDPALALSTVQLLVHEAAARGATLVASLHAVDLALACFARIVGIRDGAIAFDLPAAEVTQEHLRTLYGSEHPGDDPSRPAWTPAPAAFAAPLSASACR</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="42" xmlns="http://uniprot.org/uniprot">
    <accession>A9C017</accession>
    <name>A9C017_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Daci_3647</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="2" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX36279.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012205475.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="PRIDE" id="A9C017"/>
    <dbReference type="EnsemblBacteria" id="ABX36279">
        <property type="protein sequence ID" value="ABX36279"/>
        <property type="gene ID" value="Daci_3647"/>
    </dbReference>
    <dbReference type="GeneID" id="60687887"/>
    <dbReference type="KEGG" id="dac:Daci_3647"/>
    <dbReference type="eggNOG" id="ENOG5033BGB">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_196486_0_0_4"/>
    <dbReference type="OMA" id="CGRFRAS"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ABX36279.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="69" mass="7727" checksum="A55C995FE9613A7E" modified="2008-01-15" version="1">MGKYVVSPSTHPTDCGRFRASFAVHRSQGNGSYCRVFRFDKAFASREAARLFAVTQGWLQTCMQHPPAC</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="76" xmlns="http://uniprot.org/uniprot">
    <accession>A9C0L5</accession>
    <name>A9C0L5_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="2 4">Ferric uptake regulation protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="4" type="primary">fur</name>
        <name evidence="5" type="ordered locus">Daci_4458</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="6" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="subunit">
        <text evidence="4">Homodimer.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="4">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="1 4">Belongs to the Fur family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX37088.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012206260.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="PRIDE" id="A9C0L5"/>
    <dbReference type="EnsemblBacteria" id="ABX37088">
        <property type="protein sequence ID" value="ABX37088"/>
        <property type="gene ID" value="Daci_4458"/>
    </dbReference>
    <dbReference type="GeneID" id="60688997"/>
    <dbReference type="KEGG" id="dac:Daci_4458"/>
    <dbReference type="eggNOG" id="COG0735">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_096072_5_1_4"/>
    <dbReference type="OMA" id="FEIYGTC"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003700">
        <property type="term" value="F:DNA-binding transcription factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd07153">
        <property type="entry name" value="Fur_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.1490.190">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002481">
        <property type="entry name" value="FUR"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043135">
        <property type="entry name" value="Fur_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036390">
        <property type="entry name" value="WH_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33202">
        <property type="entry name" value="PTHR33202"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01475">
        <property type="entry name" value="FUR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46785">
        <property type="entry name" value="SSF46785"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="4" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="4" id="KW-0408">Iron</keyword>
    <keyword evidence="4" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4" id="KW-0678">Repressor</keyword>
    <keyword evidence="4" id="KW-0804">Transcription</keyword>
    <keyword evidence="4" id="KW-0805">Transcription regulation</keyword>
    <keyword evidence="3 4" id="KW-0862">Zinc</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00007957"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00020910"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022833"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="RuleBase" id="RU364037"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="ABX37088.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="141" mass="15966" checksum="8EF6572652266D13" modified="2008-01-15" version="1">MTRHTQPIVERLFRPMERSTRQRSSIRTVMEEAGRPLLPAEILGAAQREVPAIGLATVYRNIKQLMEAGEVQAVDLPGEATRYELSGRAHHHHFRCMSCNRVFNVPGCPGDMQRIAPEGFVVERHEMTLYGVCSDCHQNVQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="51" xmlns="http://uniprot.org/uniprot">
    <accession>A9C0M3</accession>
    <name>A9C0M3_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Endoribonuclease L-PSP</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Daci_4466</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="2" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX37096.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012206268.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_4466"/>
    <dbReference type="PRIDE" id="A9C0M3"/>
    <dbReference type="EnsemblBacteria" id="ABX37096">
        <property type="protein sequence ID" value="ABX37096"/>
        <property type="gene ID" value="Daci_4466"/>
    </dbReference>
    <dbReference type="GeneID" id="60688989"/>
    <dbReference type="KEGG" id="dac:Daci_4466"/>
    <dbReference type="eggNOG" id="COG0251">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_100715_4_2_4"/>
    <dbReference type="OMA" id="DYPAMAV"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.1330.40">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035959">
        <property type="entry name" value="RutC-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006175">
        <property type="entry name" value="YjgF/YER057c/UK114"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11803">
        <property type="entry name" value="PTHR11803"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01042">
        <property type="entry name" value="Ribonuc_L-PSP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55298">
        <property type="entry name" value="SSF55298"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ABX37096.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="134" mass="14853" checksum="C23E41C310258810" modified="2008-01-15" version="1">MKTLQPPDWLAPRGYANGILTEMTVGSRLVFVGGQIGWNGQQQFESDDFAEQVRQALANIVAILAEGGARPEHIVRMTWYVTDKQEYVAAYPAIGKHYRELIGRHFPAMTAVEVADLVEDRAKVEIEVTAVVPA</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2021-09-29" version="60" xmlns="http://uniprot.org/uniprot">
    <accession>A9C0U8</accession>
    <name>A9C0U8_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Daci_5783</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="4" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX38411.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_5783"/>
    <dbReference type="EnsemblBacteria" id="ABX38411">
        <property type="protein sequence ID" value="ABX38411"/>
        <property type="gene ID" value="Daci_5783"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_5783"/>
    <dbReference type="eggNOG" id="COG0697">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_033863_0_1_4"/>
    <dbReference type="OMA" id="PTLSYVW"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000620">
        <property type="entry name" value="EamA_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00892">
        <property type="entry name" value="EamA"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="38"/>
            <end position="55"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="67"/>
            <end position="84"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="90"/>
            <end position="114"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="121"/>
            <end position="142"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="154"/>
            <end position="175"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="187"/>
            <end position="208"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="214"/>
            <end position="238"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="250"/>
            <end position="272"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="278"/>
            <end position="298"/>
        </location>
    </feature>
    <feature type="domain" description="EamA" evidence="2">
        <location>
            <begin position="12"/>
            <end position="138"/>
        </location>
    </feature>
    <feature type="domain" description="EamA" evidence="2">
        <location>
            <begin position="156"/>
            <end position="290"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF00892"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ABX38411.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="316" mass="32473" checksum="3214F976180254A2" modified="2008-01-15" version="1">MRMNGKTSYLALLAVGGLILSLSGVAVAFSSMGTSAMGFYRMLLGGLGLAGFALWRGLRWRMTRQALLYACLAGAALALDLYWWHKSIRMVGPGLGAILTNCQSFFLAGLAWAVFRERITVVYFVALVLAATGILMVSGAGLPVASGPDSASEHWLGVALGLASAAAYALCVVFIKKGQTPPHATHPAVNMAVLCAAAAPCLLAAAWLEGESLAIASAADFGTLLLYGLLVQGVAWLMVSTAVPHVKASLAGLILLAEPIGTYAIDVLFFTARPTPMALAGMALTLAAIYAGSTYGGAPSGGAPARRMAKAQGSGH</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-05-25" version="70" xmlns="http://uniprot.org/uniprot">
    <accession>A9C0V2</accession>
    <name>A9C0V2_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="4">Divalent metal cation transporter MntH</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="4" type="primary">mntH</name>
        <name evidence="5" type="ordered locus">Daci_5787</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="6" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="4">H(+)-stimulated, divalent metal cation uptake system.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="4">Cell inner membrane</location>
            <topology evidence="4">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="4">Belongs to the NRAMP family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX38415.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012207584.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_5787"/>
    <dbReference type="EnsemblBacteria" id="ABX38415">
        <property type="protein sequence ID" value="ABX38415"/>
        <property type="gene ID" value="Daci_5787"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_5787"/>
    <dbReference type="eggNOG" id="COG1914">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_020088_2_0_4"/>
    <dbReference type="OMA" id="SPKWLRY"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046873">
        <property type="term" value="F:metal ion transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015293">
        <property type="term" value="F:symporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00221">
        <property type="entry name" value="NRAMP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001046">
        <property type="entry name" value="NRAMP_fam"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11706">
        <property type="entry name" value="PTHR11706"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01566">
        <property type="entry name" value="Nramp"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00447">
        <property type="entry name" value="NATRESASSCMP"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01197">
        <property type="entry name" value="nramp"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-0997">Cell inner membrane</keyword>
    <keyword evidence="4" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="4" id="KW-0406">Ion transport</keyword>
    <keyword evidence="3 4" id="KW-0472">Membrane</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4" id="KW-0769">Symport</keyword>
    <keyword evidence="1 4" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="2 4" id="KW-1133">Transmembrane helix</keyword>
    <keyword evidence="4" id="KW-0813">Transport</keyword>
    <feature type="transmembrane region" description="Helical" evidence="4">
        <location>
            <begin position="49"/>
            <end position="65"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="4">
        <location>
            <begin position="85"/>
            <end position="107"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="4">
        <location>
            <begin position="127"/>
            <end position="150"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="4">
        <location>
            <begin position="156"/>
            <end position="177"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="4">
        <location>
            <begin position="189"/>
            <end position="209"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="4">
        <location>
            <begin position="229"/>
            <end position="249"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="4">
        <location>
            <begin position="279"/>
            <end position="299"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="4">
        <location>
            <begin position="319"/>
            <end position="347"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="4">
        <location>
            <begin position="368"/>
            <end position="386"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="4">
        <location>
            <begin position="392"/>
            <end position="415"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="4">
        <location>
            <begin position="427"/>
            <end position="450"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00221"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="ABX38415.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="456" mass="47868" checksum="DEC0DB55F4956197" modified="2008-01-15" version="1">MNDTVLAAEQGRFGAIEPDHGHAGTPSLPQVHRSIAVPRGDSRSDNARRVLAFAGPGYMVAVGYMDPGNWATSIAGGSQFGYSLLAVIFASNLMAMLFQAAAVRLGLASGRDLAQACRAQFSPRINLVLWFFCEIAIVACNLAEVLGMAIGLNLLFGLPLVAGVCITVVDVMLILALQSRGFRCLESVVIALVAVIGLCFAAQLVWLQPPVAAVLRGLLPGMEIVANPQMLYLAVGIVGATVMPHNLYLHSSIVQTRRHDTTPQGTRQAIRLATLDSTVALGLALFVNAAILVVAAGAFNRPGQAPVTELSDAYHLLSPLLGVGIASAVFGVALLASGLSSSVTGTLAGQIVMEGFLQIRLSPALRALLTRCIAIVPAVVATAWYGSTGASALLVFSQVVLSLQLPFAIVPLLLFTTRRKTLGELAFGPRMSAVLWGCAALVVSLNLWMLQRLLTA</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="84" xmlns="http://uniprot.org/uniprot">
    <accession>A9C167</accession>
    <name>A9C167_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">Histidine kinase</fullName>
            <ecNumber evidence="2">2.7.13.3</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="6" type="ordered locus">Daci_5902</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="7" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>ATP + protein L-histidine = ADP + protein N-phospho-L-histidine.</text>
            <dbReference type="EC" id="2.7.13.3"/>
        </reaction>
    </comment>
    <dbReference type="EC" id="2.7.13.3" evidence="2"/>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX38530.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012207699.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_5902"/>
    <dbReference type="PRIDE" id="A9C167"/>
    <dbReference type="EnsemblBacteria" id="ABX38530">
        <property type="protein sequence ID" value="ABX38530"/>
        <property type="gene ID" value="Daci_5902"/>
    </dbReference>
    <dbReference type="GeneID" id="60690263"/>
    <dbReference type="KEGG" id="dac:Daci_5902"/>
    <dbReference type="eggNOG" id="COG4251">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_000445_89_1_4"/>
    <dbReference type="OMA" id="CTVALEW"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000155">
        <property type="term" value="F:phosphorelay sensor kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd00082">
        <property type="entry name" value="HisKA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.565.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003594">
        <property type="entry name" value="HATPase_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036890">
        <property type="entry name" value="HATPase_C_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005467">
        <property type="entry name" value="His_kinase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003661">
        <property type="entry name" value="HisK_dim/P"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036097">
        <property type="entry name" value="HisK_dim/P_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004358">
        <property type="entry name" value="Sig_transdc_His_kin-like_C"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02518">
        <property type="entry name" value="HATPase_c"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00512">
        <property type="entry name" value="HisKA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00344">
        <property type="entry name" value="BCTRLSENSOR"/>
    </dbReference>
    <dbReference type="SMART" id="SM00387">
        <property type="entry name" value="HATPase_c"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00388">
        <property type="entry name" value="HisKA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47384">
        <property type="entry name" value="SSF47384"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55874">
        <property type="entry name" value="SSF55874"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50109">
        <property type="entry name" value="HIS_KIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="6" id="KW-0418">Kinase</keyword>
    <keyword evidence="3" id="KW-0597">Phosphoprotein</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="6" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Histidine kinase" evidence="5">
        <location>
            <begin position="51"/>
            <end position="278"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="4">
        <location>
            <begin position="1"/>
            <end position="21"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Pro residues" evidence="4">
        <location>
            <begin position="1"/>
            <end position="17"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00000085"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00012438"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022553"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="PROSITE" id="PS50109"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="ABX38530.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="286" mass="31082" checksum="30F70118813DCED6" modified="2008-01-15" version="1">MTEPFAPHPPPDPAADLQGPPRTLQDALERLAQREQELQALRAAQQEWLHAVSHDLRAPLRHVLSFGPLVDELLSQAAPSPQELQEARGFLQTMDQSARRMGGMLDGLLALSRAARTPMQWQPVALQELLEQARTAVLAQPRWAACGAAARLQWSLPQQSPAVRADAALLRQVLEALLDNAVKFTRPVDQPRIAIDVERHADGGITLSVTDNGVGFDPSRAGALFGIFQRMHRESEFPGLGTGLALVRGVMRRHGGEATIRATPAGGCCVCLNWPGGEVRRADRGL</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="65" xmlns="http://uniprot.org/uniprot">
    <accession>A9C181</accession>
    <name>A9C181_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">Endolytic peptidoglycan transglycosylase RlpA</fullName>
            <ecNumber evidence="3">4.2.2.-</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="primary">rlpA</name>
        <name evidence="7" type="ordered locus">Daci_5916</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="8" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="3">Lytic transglycosylase with a strong preference for naked glycan strands that lack stem peptides.</text>
    </comment>
    <comment type="similarity">
        <text evidence="3 4">Belongs to the RlpA family.</text>
    </comment>
    <dbReference type="EC" id="4.2.2.-" evidence="3"/>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX38544.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012207713.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_5916"/>
    <dbReference type="PRIDE" id="A9C181"/>
    <dbReference type="EnsemblBacteria" id="ABX38544">
        <property type="protein sequence ID" value="ABX38544"/>
        <property type="gene ID" value="Daci_5916"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_5916"/>
    <dbReference type="eggNOG" id="COG0797">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_042923_5_1_4"/>
    <dbReference type="OMA" id="PFYSDRI"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016829">
        <property type="term" value="F:lyase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008932">
        <property type="term" value="F:lytic endotransglycosylase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0071555">
        <property type="term" value="P:cell wall organization"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000270">
        <property type="term" value="P:peptidoglycan metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.40.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_02071">
        <property type="entry name" value="RlpA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR034718">
        <property type="entry name" value="RlpA"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009009">
        <property type="entry name" value="RlpA-like_DPBB"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036908">
        <property type="entry name" value="RlpA-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012997">
        <property type="entry name" value="RplA"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03330">
        <property type="entry name" value="DPBB_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50685">
        <property type="entry name" value="SSF50685"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00413">
        <property type="entry name" value="rlpA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2 3" id="KW-0961">Cell wall biogenesis/degradation</keyword>
    <keyword evidence="7" id="KW-0449">Lipoprotein</keyword>
    <keyword evidence="1 3" id="KW-0456">Lyase</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="3">
        <location>
            <begin position="1"/>
            <end position="31"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5009990734" description="Endolytic peptidoglycan transglycosylase RlpA" evidence="3">
        <location>
            <begin position="32"/>
            <end position="303"/>
        </location>
    </feature>
    <feature type="domain" description="DPBB_1" evidence="6">
        <location>
            <begin position="115"/>
            <end position="203"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="5">
        <location>
            <begin position="42"/>
            <end position="122"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="5">
        <location>
            <begin position="227"/>
            <end position="288"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="5">
        <location>
            <begin position="230"/>
            <end position="246"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023239"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023316"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_02071"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="RuleBase" id="RU003495"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="Pfam" id="PF03330"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="ABX38544.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="303" mass="31336" checksum="70034E0EEA9BB4A8" modified="2008-01-15" version="1" precursor="true">MDRNFRRLHWRWLAMCAITATLAGCAPAPVAETDAESGALMAGSAGSAGAEAMAEGQTPAAVPSAGKRSSRASRATPPASRSADARPSEPASPEESADTPSNPDFALVPSRDSDQQGLASWYGPGLHGRLTASGERFDKEELTAAHRSFAFGSRVCVRSAATGRTVVVRINDRGPFAPGRVIDLSQAAAQELGMVGLGIKPVELWQLDEGEEECPETLVTARKAESLKKTQQAKGQTQTQARTQVQAKAPVRPRVQAKAPAPRPNARTAVASRAAPAARPVAKAAAPAAASATAVASAASSSR</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="70" xmlns="http://uniprot.org/uniprot">
    <accession>A9C183</accession>
    <name>A9C183_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="6">Ribosomal RNA methyltransferase RrmJ/FtsJ</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ordered locus">Daci_5918</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="7" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="3">Belongs to the TlyA family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX38546.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012207715.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_5918"/>
    <dbReference type="PRIDE" id="A9C183"/>
    <dbReference type="EnsemblBacteria" id="ABX38546">
        <property type="protein sequence ID" value="ABX38546"/>
        <property type="gene ID" value="Daci_5918"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_5918"/>
    <dbReference type="eggNOG" id="COG1189">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_058015_2_0_4"/>
    <dbReference type="OMA" id="VLMVKPQ"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008168">
        <property type="term" value="F:methyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003723">
        <property type="term" value="F:RNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0032259">
        <property type="term" value="P:methylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006364">
        <property type="term" value="P:rRNA processing"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd00165">
        <property type="entry name" value="S4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.10.290.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.150">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004538">
        <property type="entry name" value="Haemolysin_A/TlyA"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002877">
        <property type="entry name" value="RNA_MeTrfase_FtsJ_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002942">
        <property type="entry name" value="S4_RNA-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036986">
        <property type="entry name" value="S4_RNA-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029063">
        <property type="entry name" value="SAM-dependent_MTases_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR32319:SF0">
        <property type="entry name" value="PTHR32319:SF0"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01728">
        <property type="entry name" value="FtsJ"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53335">
        <property type="entry name" value="SSF53335"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="6" id="KW-0489">Methyltransferase</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0698">rRNA processing</keyword>
    <keyword evidence="2" id="KW-0949">S-adenosyl-L-methionine</keyword>
    <keyword evidence="6" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="FtsJ" evidence="5">
        <location>
            <begin position="63"/>
            <end position="330"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="4">
        <location>
            <begin position="336"/>
            <end position="400"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="4">
        <location>
            <begin position="365"/>
            <end position="379"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022552"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022691"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00029460"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="Pfam" id="PF01728"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="ABX38546.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="400" mass="43635" checksum="AA73CDAB6A6F857F" modified="2008-01-15" version="1">MRADVFLVEAGHAATRSQAQRLIAGGVQWRMTPLTPWKKVAKNGDEIPAGAELQLLDGAEARFISRGGLKLEGALAATKLSVQGLRCLDVGQSTGGFTDCLLQAGAAQVIGVDVGHGQLHDRLRSDVRVICVEGVNARAVTAEGLQESCEEVLSERWEEDPDDNDTQPVAPYAWMRNGGLVDEDYDDSDDAKEKEIEAFKAERAAKGKAREEGTVATQRRRRAEFADVDITPQFDFVTGDLSFISLTLVLPAVTRLLKPHGQLLMLVKPQFELQPGQVGKGGIVRDAALFTEVEQRIRTCLGELGLEVKGWMESAIEGGDGNREFFVHAQQAAVVKEPAQPETQDEDEPRSAVKAAPKPAAPKRVSRTVLREQRNERVIDTSTEFGVPGPGRAKLRKRNE</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="80" xmlns="http://uniprot.org/uniprot">
    <accession>A9C1D5</accession>
    <name>A9C1D5_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="11">Carbamoyl-phosphate synthase L chain ATP-binding</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="11" type="ordered locus">Daci_5970</name>
    </gene>
    <organism evidence="11 12">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="11 12" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="12">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="12" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="12">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>biotin</name>
            <dbReference type="ChEBI" id="CHEBI:57586"/>
        </cofactor>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX38598.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012207767.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_5970"/>
    <dbReference type="PRIDE" id="A9C1D5"/>
    <dbReference type="EnsemblBacteria" id="ABX38598">
        <property type="protein sequence ID" value="ABX38598"/>
        <property type="gene ID" value="Daci_5970"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_5970"/>
    <dbReference type="eggNOG" id="COG4770">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_000395_3_1_4"/>
    <dbReference type="OMA" id="IYYDPML"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016874">
        <property type="term" value="F:ligase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006164">
        <property type="term" value="P:purine nucleotide biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011761">
        <property type="entry name" value="ATP-grasp"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005481">
        <property type="entry name" value="BC-like_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001882">
        <property type="entry name" value="Biotin_BS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011764">
        <property type="entry name" value="Biotin_carboxylation_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005482">
        <property type="entry name" value="Biotin_COase_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000089">
        <property type="entry name" value="Biotin_lipoyl"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005479">
        <property type="entry name" value="CbamoylP_synth_lsu-like_ATP-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016185">
        <property type="entry name" value="PreATP-grasp_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011054">
        <property type="entry name" value="Rudment_hybrid_motif"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011053">
        <property type="entry name" value="Single_hybrid_motif"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02785">
        <property type="entry name" value="Biotin_carb_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00289">
        <property type="entry name" value="Biotin_carb_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00364">
        <property type="entry name" value="Biotin_lipoyl"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02786">
        <property type="entry name" value="CPSase_L_D2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00878">
        <property type="entry name" value="Biotin_carb_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51230">
        <property type="entry name" value="SSF51230"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51246">
        <property type="entry name" value="SSF51246"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52440">
        <property type="entry name" value="SSF52440"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50975">
        <property type="entry name" value="ATP_GRASP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50979">
        <property type="entry name" value="BC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00188">
        <property type="entry name" value="BIOTIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50968">
        <property type="entry name" value="BIOTINYL_LIPOYL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00866">
        <property type="entry name" value="CPSASE_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00867">
        <property type="entry name" value="CPSASE_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="5 7 11" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="6" id="KW-0092">Biotin</keyword>
    <keyword evidence="2" id="KW-0436">Ligase</keyword>
    <keyword evidence="3 7" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="4" id="KW-0658">Purine biosynthesis</keyword>
    <keyword evidence="12" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Biotin carboxylation" evidence="10">
        <location>
            <begin position="1"/>
            <end position="459"/>
        </location>
    </feature>
    <feature type="domain" description="ATP-grasp" evidence="9">
        <location>
            <begin position="120"/>
            <end position="325"/>
        </location>
    </feature>
    <feature type="domain" description="Lipoyl-binding" evidence="8">
        <location>
            <begin position="595"/>
            <end position="671"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001953"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022598"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022755"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023267"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00409"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="PROSITE" id="PS50968"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="9">
        <source>
            <dbReference type="PROSITE" id="PS50975"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="10">
        <source>
            <dbReference type="PROSITE" id="PS50979"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="EMBL" id="ABX38598.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="672" mass="72535" checksum="A6C515F88DDE6E52" modified="2008-01-15" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="66" xmlns="http://uniprot.org/uniprot">
    <accession>A9C1Q5</accession>
    <name>A9C1Q5_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">GPW/gp25 family protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_2602</name>
        <name evidence="3" type="ordered locus">Daci_2636</name>
    </gene>
    <organism evidence="2 4">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 4" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
            <strain evidence="2">SPH-1</strain>
        </source>
    </reference>
    <reference evidence="4" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="2" key="3">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX35240.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX35274.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012204519.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_2602"/>
    <dbReference type="PRIDE" id="A9C1Q5"/>
    <dbReference type="EnsemblBacteria" id="ABX35240">
        <property type="protein sequence ID" value="ABX35240"/>
        <property type="gene ID" value="Daci_2602"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="ABX35274">
        <property type="protein sequence ID" value="ABX35274"/>
        <property type="gene ID" value="Daci_2636"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_2602"/>
    <dbReference type="KEGG" id="dac:Daci_2636"/>
    <dbReference type="eggNOG" id="COG3628">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_133204_1_2_4"/>
    <dbReference type="OMA" id="GRWEPRL"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007048">
        <property type="entry name" value="IraD/Gp25-like"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04965">
        <property type="entry name" value="GPW_gp25"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="GPW_gp25" evidence="1">
        <location>
            <begin position="12"/>
            <end position="98"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF04965"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX35240.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ABX35274.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="116" mass="13021" checksum="D655776DE98B2A5E" modified="2008-01-15" version="1">MNRHTGRRIEGMEHLRQSVADILSTPIGSRVMRRDYGSLVPALLDQPDNNATQARLRAAVASALMRWEPRIRLTRIVIERDPATPARADLTLIGTFNNTRRPAPLSLQMPIARTLS</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="50" xmlns="http://uniprot.org/uniprot">
    <accession>A9C207</accession>
    <name>A9C207_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Cyclase/dehydrase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Daci_3005</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="4" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the ribosome association toxin RatA family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX35643.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_3005"/>
    <dbReference type="PRIDE" id="A9C207"/>
    <dbReference type="EnsemblBacteria" id="ABX35643">
        <property type="protein sequence ID" value="ABX35643"/>
        <property type="gene ID" value="Daci_3005"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_3005"/>
    <dbReference type="eggNOG" id="COG2867">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_079653_3_1_4"/>
    <dbReference type="OMA" id="YIDGPFK"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0048039">
        <property type="term" value="F:ubiquinone binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0045333">
        <property type="term" value="P:cellular respiration"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006744">
        <property type="term" value="P:ubiquinone biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd07813">
        <property type="entry name" value="COQ10p_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.530.20">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR044996">
        <property type="entry name" value="COQ10-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005031">
        <property type="entry name" value="COQ10_START"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023393">
        <property type="entry name" value="START-like_dom_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR12901">
        <property type="entry name" value="PTHR12901"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03364">
        <property type="entry name" value="Polyketide_cyc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Polyketide_cyc" evidence="2">
        <location>
            <begin position="30"/>
            <end position="159"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00008918"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF03364"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ABX35643.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="168" mass="18753" checksum="1A08719331435CC9" modified="2008-01-15" version="1">MRHDRAAGVLHAVQPAPFMKKVNKSVLIWYSPQEMFALVTDVAHYADFLPWCDQARVLEQDEQGMTAEVGIAFGGMRKSFVTRNTHSVLDDGGRQVSIRLIKGPFSRLEGNWMFRPVGDGTQRACRVELQLDYGFDNMALAAVVGPVFDRIAGSMVDAFVKRAEQVYG</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="73" xmlns="http://uniprot.org/uniprot">
    <accession>A9C280</accession>
    <name>A9C280_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Folate-binding protein YgfZ</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_3386</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX36024.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012205224.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_3386"/>
    <dbReference type="PRIDE" id="A9C280"/>
    <dbReference type="EnsemblBacteria" id="ABX36024">
        <property type="protein sequence ID" value="ABX36024"/>
        <property type="gene ID" value="Daci_3386"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_3386"/>
    <dbReference type="eggNOG" id="COG0354">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_007884_6_2_4"/>
    <dbReference type="OMA" id="VNFKKGC"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006222">
        <property type="entry name" value="GCV_T_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045179">
        <property type="entry name" value="YgfZ/GcvT"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017703">
        <property type="entry name" value="YgfZ/GcvT_CS"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR22602">
        <property type="entry name" value="PTHR22602"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01571">
        <property type="entry name" value="GCV_T"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR03317">
        <property type="entry name" value="ygfZ_signature"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="GCV_T" evidence="1">
        <location>
            <begin position="8"/>
            <end position="120"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF01571"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX36024.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="315" mass="33199" checksum="FF2F2A4223B6A870" modified="2008-01-15" version="1">MTQPLLNGIASVSHLGVIRALGEDAAQFLHGQLTNDFALLDLQHARLAAFCTAKGRMLASFIGFKRSKDEILLLCDRSLLAPTLKRLSMFVLRAKCKLSDATAEFTLHGLAGGAAAQALGPAAVPWTKTDDGDASLIALYPAAGQPRALRVAPVGTPLPEGPALSEADWLWSEVASGIATLSAPVVDAFVPQMLNYESVEGVNFKKGCYPGQEVVARSQFRGTLKRRAYLAHAQQPLATGMEVFTPEDLEQATGTVVQAAPAPGGGWDAIVSIQTSSADQPLLAHAALGEGQRADAAQAVALQLKPLPYALREDI</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="28" xmlns="http://uniprot.org/uniprot">
    <accession>A9C2B8</accession>
    <name>A9C2B8_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Daci_3424</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="2" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX36062.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_3424"/>
    <dbReference type="PRIDE" id="A9C2B8"/>
    <dbReference type="EnsemblBacteria" id="ABX36062">
        <property type="protein sequence ID" value="ABX36062"/>
        <property type="gene ID" value="Daci_3424"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_3424"/>
    <dbReference type="HOGENOM" id="CLU_2245535_0_0_4"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ABX36062.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="104" mass="11405" checksum="E4DFF2D8B968BCAE" modified="2008-01-15" version="1">MRELLRKCEMSATILAMRQPLPPPSTPLLALLRQLGTDERRTDFAVLAGTTTAYLYQLATCKRGACRSRLAKGISDASVEMHKRHGTAVITMDTLASMCPVDRG</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="60" xmlns="http://uniprot.org/uniprot">
    <accession>A9C2J8</accession>
    <name>A9C2J8_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Glutamine amidotransferase class-I</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_3715</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX36347.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012205543.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_3715"/>
    <dbReference type="PRIDE" id="A9C2J8"/>
    <dbReference type="EnsemblBacteria" id="ABX36347">
        <property type="protein sequence ID" value="ABX36347"/>
        <property type="gene ID" value="Daci_3715"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_3715"/>
    <dbReference type="eggNOG" id="COG0518">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_054974_3_1_4"/>
    <dbReference type="OMA" id="TSMLHWH"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016740">
        <property type="term" value="F:transferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006541">
        <property type="term" value="P:glutamine metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd01741">
        <property type="entry name" value="GATase1_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.880">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR044992">
        <property type="entry name" value="ChyE-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029062">
        <property type="entry name" value="Class_I_gatase-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017926">
        <property type="entry name" value="GATASE"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR42695">
        <property type="entry name" value="PTHR42695"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00117">
        <property type="entry name" value="GATase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52317">
        <property type="entry name" value="SSF52317"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0315">Glutamine amidotransferase</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="GATase" evidence="1">
        <location>
            <begin position="18"/>
            <end position="180"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF00117"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX36347.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="234" mass="24924" checksum="20CAE95B2EC73E9C" modified="2008-01-15" version="1">MKKAIALRHIHFEDLGTLHAEFASRGYEVQYVDPSIGELDTLDLGRADLLVVLGGPIGAYDEALYPFVAQELAAVRRWLDSGKPLLGICLGAQLIARALGARVYPLGVKEIGFSPLTLTDAGLASPLAKLDGVPVLHWHGDQFDIPEGAVHLAGTAIGANQAFAVGSQVLGLQFHLEADAARLERWLVGHACELGVAQVDPRTLRADAQKYGGLLALAARDVLAGWLANLARSR</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="62" xmlns="http://uniprot.org/uniprot">
    <accession>A9C2Q5</accession>
    <name>A9C2Q5_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Enoyl-CoA hydratase/isomerase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_3772</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the enoyl-CoA hydratase/isomerase family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX36404.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012205598.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_3772"/>
    <dbReference type="PRIDE" id="A9C2Q5"/>
    <dbReference type="EnsemblBacteria" id="ABX36404">
        <property type="protein sequence ID" value="ABX36404"/>
        <property type="gene ID" value="Daci_3772"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_3772"/>
    <dbReference type="eggNOG" id="COG1024">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_009834_7_2_4"/>
    <dbReference type="OMA" id="YACDIRI"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016853">
        <property type="term" value="F:isomerase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029045">
        <property type="entry name" value="ClpP/crotonase-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018376">
        <property type="entry name" value="Enoyl-CoA_hyd/isom_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001753">
        <property type="entry name" value="Enoyl-CoA_hydra/iso"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00378">
        <property type="entry name" value="ECH_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52096">
        <property type="entry name" value="SSF52096"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00166">
        <property type="entry name" value="ENOYL_COA_HYDRATASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2" id="KW-0413">Isomerase</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="RuleBase" id="RU003707"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX36404.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="254" mass="26949" checksum="B854CC4E33A45CC4" modified="2008-01-15" version="1">MSPALHESVALAVHAGGAAEILIDRPERHNAMSMPMYEALLTALERCQADPAIRCVMLRGAGGKSFISGTDIAYFKDFHDGQQGIAYEAFVERVIDAVERIAVPTIAVIDGWAVGGGLALATACDFRICSTGSRFGAPIAKTLSNTLSSRNIARLLASLGVPRVKRMLLLADYLSAGQAEACGFVHAVVPADQLQAQAQALAEQLMALSATTQSAVKESLRRIVVEQRLDDEDLVSVVYGSGEFRAGVARFTGT</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="81" xmlns="http://uniprot.org/uniprot">
    <accession>A9C2Z0</accession>
    <name>A9C2Z0_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">DNA helicase</fullName>
            <ecNumber evidence="2">3.6.4.12</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="7" type="ordered locus">Daci_4163</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="8" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>ATP + H2O = ADP + H(+) + phosphate</text>
            <dbReference type="Rhea" id="RHEA:13065"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:43474"/>
            <dbReference type="ChEBI" id="CHEBI:456216"/>
            <dbReference type="EC" id="3.6.4.12"/>
        </reaction>
    </comment>
    <dbReference type="EC" id="3.6.4.12" evidence="2"/>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX36794.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_4163"/>
    <dbReference type="PRIDE" id="A9C2Z0"/>
    <dbReference type="EnsemblBacteria" id="ABX36794">
        <property type="protein sequence ID" value="ABX36794"/>
        <property type="gene ID" value="Daci_4163"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_4163"/>
    <dbReference type="eggNOG" id="COG0210">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_474772_0_0_4"/>
    <dbReference type="OMA" id="WRILKTH"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016887">
        <property type="term" value="F:ATP hydrolysis activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="RHEA"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003678">
        <property type="term" value="F:DNA helicase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000212">
        <property type="entry name" value="DNA_helicase_UvrD/REP"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014016">
        <property type="entry name" value="UvrD-like_ATP-bd"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11070">
        <property type="entry name" value="PTHR11070"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00580">
        <property type="entry name" value="UvrD-helicase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51198">
        <property type="entry name" value="UVRD_HELICASE_ATP_BIND"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4 5" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="5 7" id="KW-0347">Helicase</keyword>
    <keyword evidence="5" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="3 5" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="UvrD-like helicase ATP-binding" evidence="6">
        <location>
            <begin position="1"/>
            <end position="218"/>
        </location>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <begin position="2"/>
            <end position="9"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001665"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00012551"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00560"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="PROSITE" id="PS51198"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="ABX36794.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="550" mass="60826" checksum="950A37DCCE3E9376" modified="2008-01-15" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="57" xmlns="http://uniprot.org/uniprot">
    <accession>A9C355</accession>
    <name>A9C355_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Amidohydrolase 2</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Daci_4537</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="4" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX37166.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012206336.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_4537"/>
    <dbReference type="PRIDE" id="A9C355"/>
    <dbReference type="EnsemblBacteria" id="ABX37166">
        <property type="protein sequence ID" value="ABX37166"/>
        <property type="gene ID" value="Daci_4537"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_4537"/>
    <dbReference type="eggNOG" id="COG2159">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_044590_4_2_4"/>
    <dbReference type="OMA" id="ICQQKGN"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016831">
        <property type="term" value="F:carboxy-lyase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016787">
        <property type="term" value="F:hydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR032465">
        <property type="entry name" value="ACMSD"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006680">
        <property type="entry name" value="Amidohydro-rel"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR032466">
        <property type="entry name" value="Metal_Hydrolase"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR21240">
        <property type="entry name" value="PTHR21240"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04909">
        <property type="entry name" value="Amidohydro_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51556">
        <property type="entry name" value="SSF51556"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="1" id="KW-0456">Lyase</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Amidohydro-rel" evidence="2">
        <location>
            <begin position="9"/>
            <end position="286"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023239"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF04909"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ABX37166.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="295" mass="33528" checksum="39BCDCE98AE61220" modified="2008-01-15" version="1">MDHEKLIAIDIHTHAEVSCWNPFDNYGEEYDRAADKYFGNGRRPTIAETVAYYRERNLGLVMFTVDSESQLGRRRIPNEEIAEAARSNSDMMVAFASIDPHKGRMGAREARRLIEEEGVRGFKFHPTVQGFHPYDRMAWPIYEVVAEYQLPAIFHTGHSGIGSGMRCGGGLRLAYSNPMHLDDVAIDFPDMQIVMAHPSFPWQDEALSVALHKPNVWIDLSGWSPKYFPRQLVQYANTLLKDRVLFGSDYPLITPERWMKDFQEAGFKPEVMPGILKGNAVRLLGLEQPAAEKAD</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="63" xmlns="http://uniprot.org/uniprot">
    <accession>A9C362</accession>
    <name>A9C362_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="2 4">Beta-lactamase</fullName>
            <ecNumber evidence="2 4">3.5.2.6</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="7" type="ordered locus">Daci_4544</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="8" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="4">
            <text>a beta-lactam + H2O = a substituted beta-amino acid</text>
            <dbReference type="Rhea" id="RHEA:20401"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:35627"/>
            <dbReference type="ChEBI" id="CHEBI:140347"/>
            <dbReference type="EC" id="3.5.2.6"/>
        </reaction>
    </comment>
    <comment type="similarity">
        <text evidence="1 4">Belongs to the class-D beta-lactamase family.</text>
    </comment>
    <dbReference type="EC" id="3.5.2.6" evidence="2 4"/>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX37173.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012206343.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_4544"/>
    <dbReference type="PRIDE" id="A9C362"/>
    <dbReference type="EnsemblBacteria" id="ABX37173">
        <property type="protein sequence ID" value="ABX37173"/>
        <property type="gene ID" value="Daci_4544"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_4544"/>
    <dbReference type="eggNOG" id="COG2602">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_035412_2_0_4"/>
    <dbReference type="OMA" id="NGLTHAW"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008800">
        <property type="term" value="F:beta-lactamase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008658">
        <property type="term" value="F:penicillin binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0017001">
        <property type="term" value="P:antibiotic catabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046677">
        <property type="term" value="P:response to antibiotic"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.710.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012338">
        <property type="entry name" value="Beta-lactam/transpept-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002137">
        <property type="entry name" value="Beta-lactam_class-D_AS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001460">
        <property type="entry name" value="PCN-bd_Tpept"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00905">
        <property type="entry name" value="Transpeptidase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56601">
        <property type="entry name" value="SSF56601"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00337">
        <property type="entry name" value="BETA_LACTAMASE_D"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-0046">Antibiotic resistance</keyword>
    <keyword evidence="4 7" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="5" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="5">
        <location>
            <begin position="1"/>
            <end position="22"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5002735335" description="Beta-lactamase" evidence="5">
        <location>
            <begin position="23"/>
            <end position="266"/>
        </location>
    </feature>
    <feature type="domain" description="Transpeptidase" evidence="6">
        <location>
            <begin position="26"/>
            <end position="252"/>
        </location>
    </feature>
    <feature type="active site" description="Acyl-ester intermediate" evidence="3">
        <location>
            <position position="53"/>
        </location>
    </feature>
    <feature type="modified residue" description="N6-carboxylysine" evidence="3">
        <location>
            <position position="56"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00007898"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00012865"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="PIRSR" id="PIRSR602137-50"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="RuleBase" id="RU361140"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="Pfam" id="PF00905"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="ABX37173.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="266" mass="29265" checksum="F3FCF6D8BA089D8B" modified="2008-01-15" version="1">MHGFPGSAATVVAAFFCLPACAHELCTIVADADTGQSLVHSGPACAERVTPASTFKIAISLMGYDAGILQDESRPAWPYQPEYPDWGGDAWRREITPQAWMKDSVFWYSQQVARELGQQRFGAYVRAFQYGNEDVSAVAVAHPGHNGAWVVSSLRISAAEQVAFMRKIVRRELSVSSQAIDMTARITRYPVPVDGWTVHGKTGTGSPGSDNRYDASRAYGWYVGWATKDQRRLVFATLIQDEQAQKPNAGLRARDALLQRLPAADR</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2021-06-02" version="52" xmlns="http://uniprot.org/uniprot">
    <accession>A9C3B9</accession>
    <name>A9C3B9_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">Biotin transporter</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="4" type="ordered locus">Daci_4601</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="5" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="2">Cell membrane</location>
            <topology evidence="2">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="1 2">Belongs to the BioY family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX37230.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012206400.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_4601"/>
    <dbReference type="EnsemblBacteria" id="ABX37230">
        <property type="protein sequence ID" value="ABX37230"/>
        <property type="gene ID" value="Daci_4601"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_4601"/>
    <dbReference type="eggNOG" id="COG1268">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_077931_0_1_4"/>
    <dbReference type="OMA" id="AGYLWSY"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015225">
        <property type="term" value="F:biotin transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003784">
        <property type="entry name" value="BioY"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR34295">
        <property type="entry name" value="PTHR34295"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02632">
        <property type="entry name" value="BioY"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF016661">
        <property type="entry name" value="BioY"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="2 3" id="KW-0472">Membrane</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="3" id="KW-1133">Transmembrane helix</keyword>
    <keyword evidence="2" id="KW-0813">Transport</keyword>
    <feature type="transmembrane region" description="Helical" evidence="3">
        <location>
            <begin position="12"/>
            <end position="32"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="3">
        <location>
            <begin position="66"/>
            <end position="91"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="3">
        <location>
            <begin position="97"/>
            <end position="114"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="3">
        <location>
            <begin position="126"/>
            <end position="150"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="3">
        <location>
            <begin position="156"/>
            <end position="179"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00010692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="PIRNR" id="PIRNR016661"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="ABX37230.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="197" mass="20145" checksum="DFC308031FD41D49" modified="2008-01-15" version="1">MTAPSTVSRASARSMAQVSLFAALMAVMGLIPKIDLPLGVPITIQSLGVMLAGVMLGPWRGMQSMLLFLAAVAVGLPLLSGGRGGIAVFMAPSAGYLLGYPLAACIAGLVMRALPQGAPRRAAFSAFAASALGGLVALHAFGVLGLMLMAKLSLSQAFMATLLFVPGDLIKCVLCALVVHTVARGMPDWPFGGRQHG</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2021-06-02" version="31" xmlns="http://uniprot.org/uniprot">
    <accession>A9C3L7</accession>
    <name>A9C3L7_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Daci_4699</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="2" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX37328.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012206498.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_4699"/>
    <dbReference type="EnsemblBacteria" id="ABX37328">
        <property type="protein sequence ID" value="ABX37328"/>
        <property type="gene ID" value="Daci_4699"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_4699"/>
    <dbReference type="HOGENOM" id="CLU_2537030_0_0_4"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ABX37328.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="83" mass="9124" checksum="151DB1617D4D07F1" modified="2008-01-15" version="1">MSPPYPETPPPTPPGPFWLATYFRDLAEGAVMEREGDGHPLIWSACALLSNAGYAALDEARHSGMLLYAWCGTTFFDQPTARH</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="62" xmlns="http://uniprot.org/uniprot">
    <accession>A9BLG2</accession>
    <name>A9BLG2_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Aldehyde oxidase and xanthine dehydrogenase molybdopterin binding</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Daci_3816</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="4" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX36447.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012205641.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_3816"/>
    <dbReference type="PRIDE" id="A9BLG2"/>
    <dbReference type="EnsemblBacteria" id="ABX36447">
        <property type="protein sequence ID" value="ABX36447"/>
        <property type="gene ID" value="Daci_3816"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_3816"/>
    <dbReference type="eggNOG" id="COG1529">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_001681_2_2_4"/>
    <dbReference type="OMA" id="SWMRAPG"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005506">
        <property type="term" value="F:iron ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016491">
        <property type="term" value="F:oxidoreductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000674">
        <property type="entry name" value="Ald_Oxase/Xan_DH_a/b"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036856">
        <property type="entry name" value="Ald_Oxase/Xan_DH_a/b_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016208">
        <property type="entry name" value="Ald_Oxase/xanthine_DH"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008274">
        <property type="entry name" value="AldOxase/xan_DH_Mopterin-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037165">
        <property type="entry name" value="AldOxase/xan_DH_Mopterin-bd_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11908">
        <property type="entry name" value="PTHR11908"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01315">
        <property type="entry name" value="Ald_Xan_dh_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02738">
        <property type="entry name" value="Ald_Xan_dh_C2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM01008">
        <property type="entry name" value="Ald_Xan_dh_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54665">
        <property type="entry name" value="SSF54665"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56003">
        <property type="entry name" value="SSF56003"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Ald_Xan_dh_C" evidence="2">
        <location>
            <begin position="32"/>
            <end position="138"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="390"/>
            <end position="413"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="397"/>
            <end position="413"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="SMART" id="SM01008"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ABX36447.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="750" mass="79239" checksum="B20660B8072E2666" modified="2008-01-15" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="67" xmlns="http://uniprot.org/uniprot">
    <accession>A9BLS8</accession>
    <name>A9BLS8_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="7">Cytochrome c class I</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ordered locus">Daci_4236</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="8" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX36867.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012206039.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_4236"/>
    <dbReference type="PRIDE" id="A9BLS8"/>
    <dbReference type="EnsemblBacteria" id="ABX36867">
        <property type="protein sequence ID" value="ABX36867"/>
        <property type="gene ID" value="Daci_4236"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_4236"/>
    <dbReference type="eggNOG" id="COG3258">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_058582_1_0_4"/>
    <dbReference type="OMA" id="IYENMPF"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009055">
        <property type="term" value="F:electron transfer activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0020037">
        <property type="term" value="F:heme binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.760.10">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009056">
        <property type="entry name" value="Cyt_c-like_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036909">
        <property type="entry name" value="Cyt_c-like_dom_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13442">
        <property type="entry name" value="Cytochrome_CBB3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46626">
        <property type="entry name" value="SSF46626"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51007">
        <property type="entry name" value="CYTC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1 4" id="KW-0349">Heme</keyword>
    <keyword evidence="3 4" id="KW-0408">Iron</keyword>
    <keyword evidence="5" id="KW-0472">Membrane</keyword>
    <keyword evidence="2 4" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="5" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="5" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="18"/>
            <end position="37"/>
        </location>
    </feature>
    <feature type="domain" description="Cytochrome c" evidence="6">
        <location>
            <begin position="221"/>
            <end position="305"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022617"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023004"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00433"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="PROSITE" id="PS51007"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="ABX36867.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="343" mass="36692" checksum="850FE02F6C91CDC0" modified="2008-01-15" version="1">MSDTQPTRASKNSNTAEYVVVACLFAGLAGALAYGMYISQPDMPPAPARVGAVPAAAATAARVDANANAQVTSQAVKVAADGEAFTPPGARDIPDTPMGEWIRRGEAIFLRTPANAVGFSGNTLNCVNCHLDAGRLKGAAPMWGAYPLYPAYRKKTNHVDTFAERVRGCFMYSMNGKAPDDGHDILVALEAYAYWMAQKAPTGEKLPGAGFTKVGKAAQEPSFERGAKVYEAKCALCHGVQGQGQETGGVTVFPPLWGKQSYNWGAGTHEVDKAASFIKGNMPYGNPTLDDQEAWDVATYINSMERPQDPRFTGNVADTRKQFHDTPFSLYGTEVNGRLLKGL</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="76" xmlns="http://uniprot.org/uniprot">
    <accession>A9BM45</accession>
    <name>A9BM45_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="4">RNA polymerase, sigma-24 subunit, ECF subfamily</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ordered locus">Daci_4761</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="5" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the sigma-70 factor family. ECF subfamily.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX37390.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012206560.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_4761"/>
    <dbReference type="PRIDE" id="A9BM45"/>
    <dbReference type="EnsemblBacteria" id="ABX37390">
        <property type="protein sequence ID" value="ABX37390"/>
        <property type="gene ID" value="Daci_4761"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_4761"/>
    <dbReference type="eggNOG" id="COG1595">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_047691_12_5_4"/>
    <dbReference type="OMA" id="IAVEMHR"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016987">
        <property type="term" value="F:sigma factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006352">
        <property type="term" value="P:DNA-templated transcription, initiation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0050896">
        <property type="term" value="P:response to stimulus"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR039425">
        <property type="entry name" value="RNA_pol_sigma-70-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014284">
        <property type="entry name" value="RNA_pol_sigma-70_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007627">
        <property type="entry name" value="RNA_pol_sigma70_r2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013249">
        <property type="entry name" value="RNA_pol_sigma70_r4_t2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013325">
        <property type="entry name" value="RNA_pol_sigma_r2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013324">
        <property type="entry name" value="RNA_pol_sigma_r3/r4-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43133">
        <property type="entry name" value="PTHR43133"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04542">
        <property type="entry name" value="Sigma70_r2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08281">
        <property type="entry name" value="Sigma70_r4_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF88659">
        <property type="entry name" value="SSF88659"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF88946">
        <property type="entry name" value="SSF88946"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR02937">
        <property type="entry name" value="sigma70-ECF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Sigma70_r2" evidence="2">
        <location>
            <begin position="18"/>
            <end position="79"/>
        </location>
    </feature>
    <feature type="domain" description="Sigma70_r4_2" evidence="3">
        <location>
            <begin position="112"/>
            <end position="163"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00010641"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF04542"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF08281"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="ABX37390.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="174" mass="20070" checksum="D6B8DFDC26D883A5" modified="2008-01-15" version="1">MSLNHTHSSLEEVFIASRGQLVRVARRILRNPELADDAVQDTYLRVAEMRSDAEIAKPAAYWTRAVCNMALDYLRRQERENSYRTHGVDVETLEIPDSRSPERLLFESQAIRLIDQALDEVPPKTRETFELYRIKGLTQRQIAEHMECALGLVNARIADACRAIHVHRSLLDHH</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-01-19" version="43" xmlns="http://uniprot.org/uniprot">
    <accession>A9BM58</accession>
    <name>A9BM58_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">17 kDa surface antigen</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_4774</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX37403.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_4774"/>
    <dbReference type="EnsemblBacteria" id="ABX37403">
        <property type="protein sequence ID" value="ABX37403"/>
        <property type="gene ID" value="Daci_4774"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_4774"/>
    <dbReference type="eggNOG" id="COG3134">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_094245_0_0_4"/>
    <dbReference type="OMA" id="CRDENVY"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0019867">
        <property type="term" value="C:outer membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008816">
        <property type="entry name" value="Gly_zipper_2TM_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF05433">
        <property type="entry name" value="Rick_17kDa_Anti"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Rick_17kDa_Anti" evidence="1">
        <location>
            <begin position="24"/>
            <end position="63"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF05433"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX37403.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="213" mass="22353" checksum="C9E5C5DA7A7FAE91" modified="2008-01-15" version="1">MAVPQQVCRDENVYSGQRSTSGAGAVLGALAGGVVGNAIGHGGGRAAATAAGVIGGAMLGNQAEASGQQPQYQTVRNCTTQTYYQNRAVAYDVVYEYAGRNYTTRTATPPGDWIALSVQPAANSGAYGSNGYYSTNQPPQAAYSTTPVPPPVVYENNYYDGGYYPAQPVQPVYSAGDYVAPVVIGAALAAGVYYASRPSYHGWRGGYRHGWRR</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="58" xmlns="http://uniprot.org/uniprot">
    <accession>A9BMC8</accession>
    <name>A9BMC8_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="3">VWA containing CoxE family protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Daci_4844</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="4" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX37473.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012206643.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_4844"/>
    <dbReference type="PRIDE" id="A9BMC8"/>
    <dbReference type="EnsemblBacteria" id="ABX37473">
        <property type="protein sequence ID" value="ABX37473"/>
        <property type="gene ID" value="Daci_4844"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_4844"/>
    <dbReference type="eggNOG" id="COG2425">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_058765_0_0_4"/>
    <dbReference type="OMA" id="DIDWNRT"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.410">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008912">
        <property type="entry name" value="Uncharacterised_CoxE"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002035">
        <property type="entry name" value="VWF_A"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036465">
        <property type="entry name" value="vWFA_dom_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF05762">
        <property type="entry name" value="VWA_CoxE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00327">
        <property type="entry name" value="VWA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53300">
        <property type="entry name" value="SSF53300"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="VWFA" evidence="2">
        <location>
            <begin position="230"/>
            <end position="389"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="24"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="SMART" id="SM00327"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ABX37473.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="410" mass="44633" checksum="D7E3D93AC71BA1E2" modified="2008-01-15" version="1">MNTAATVNDASLAGADPQETAPQPTTRLQRWRLVLGQPSEASCGGLGPKGSSIDEMDKALAALYEEDNKDGGLSRRGGRGNSSPSVARWLGDIRKYFPSQVVQVMQRDAMERLNLRELMLQPEMLEHVQPDVHMVADLISLGSVIPQNTKETARIVVRKVVDDLMRRLEEPMRSAVSGALDRSQRNRRPRHSEIDWNRTIRANLRHWQPDYRTIVPETLVGYGRKVRRPQREVILCIDQSGSMANSVVYSSIFGAVMASLPAVATRLVVFDTAVVDLTDKLSDPVDVLFGVQLGGGTDINRAVGYCQGLISEPRNAIVVLISDLYEGGVESGLLRRASELVESGVQFITLLALSDEGAPAYDAQLAAKLAALGVPSFACTPDAFPQLMAAAIRRDDVAAWAAGQGFKTSK</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="68" xmlns="http://uniprot.org/uniprot">
    <accession>A9BMH8</accession>
    <name>A9BMH8_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="7">Porin Gram-negative type</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ordered locus">Daci_4894</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="8" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX37523.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012206693.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_4894"/>
    <dbReference type="PRIDE" id="A9BMH8"/>
    <dbReference type="EnsemblBacteria" id="ABX37523">
        <property type="protein sequence ID" value="ABX37523"/>
        <property type="gene ID" value="Daci_4894"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_4894"/>
    <dbReference type="eggNOG" id="COG3203">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_038238_0_0_4"/>
    <dbReference type="OMA" id="AYLAMSW"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046930">
        <property type="term" value="C:pore complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015288">
        <property type="term" value="F:porin activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006811">
        <property type="term" value="P:ion transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd00342">
        <property type="entry name" value="gram_neg_porins"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.160.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR033900">
        <property type="entry name" value="Gram_neg_porin_domain"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023614">
        <property type="entry name" value="Porin_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002299">
        <property type="entry name" value="Porin_Neis"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13609">
        <property type="entry name" value="Porin_4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00184">
        <property type="entry name" value="NEISSPPORIN"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-0406">Ion transport</keyword>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-0626">Porin</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="5" id="KW-0732">Signal</keyword>
    <keyword evidence="2" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1134">Transmembrane beta strand</keyword>
    <keyword evidence="4" id="KW-0813">Transport</keyword>
    <feature type="signal peptide" evidence="5">
        <location>
            <begin position="1"/>
            <end position="20"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5002735820" evidence="5">
        <location>
            <begin position="21"/>
            <end position="361"/>
        </location>
    </feature>
    <feature type="domain" description="Porin_4" evidence="6">
        <location>
            <begin position="7"/>
            <end position="334"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022452"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023065"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023114"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="Pfam" id="PF13609"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="ABX37523.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="361" mass="38379" checksum="78479251DC77C96C" modified="2008-01-15" version="1">MKYKAIAALAMLGGAGAALAQSSVTLYGSMDLTMPWISDVRGSRLTRMDSAISQPDLWGLRGSEDLGGGLKASFQLENGFLTDIGSPISPTSYFNRASWVGLDSASMGSVRLGRQVDFTAGTLSQWGNGYQLYNFYLYHPGNLDGLSSQFPVDNSVVYLTPSMGGMQFGAQYGFGEVPGRSQANRTYSVMGSYSSAKLNLAVAYTDARGRAFDIAGRTGLANALGQDLVAGRPLVLDTFQVLGIGGGYQLDALPVRLNALLTRSTLKYGGASSNMSALDLGLAWQTSQSVTINTGYSFSRFEQTKWNQLHLGARYALSKRTQLHASVTHQRASDGVAAMNSVGVASGRTQTVIAAGIHHSF</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="66" xmlns="http://uniprot.org/uniprot">
    <accession>A9BMI8</accession>
    <name>A9BMI8_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="1">HI0933 family protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Daci_4904</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="2" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX37533.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012206703.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_4904"/>
    <dbReference type="PRIDE" id="A9BMI8"/>
    <dbReference type="EnsemblBacteria" id="ABX37533">
        <property type="protein sequence ID" value="ABX37533"/>
        <property type="gene ID" value="Daci_4904"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_4904"/>
    <dbReference type="eggNOG" id="COG2081">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_025174_1_0_4"/>
    <dbReference type="OMA" id="RHRWLGW"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.8.260">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.50.50.60">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004792">
        <property type="entry name" value="BaiN-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036188">
        <property type="entry name" value="FAD/NAD-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR022460">
        <property type="entry name" value="Flavoprotein_PP4765"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023166">
        <property type="entry name" value="HI0933-like_dom_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR42887">
        <property type="entry name" value="PTHR42887"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51905">
        <property type="entry name" value="SSF51905"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR03862">
        <property type="entry name" value="flavo_PP4765"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ABX37533.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="458" mass="48301" checksum="1E617C09278DF27B" modified="2008-01-15" version="1">METDVMDAFEPGAAARTMDCDVAVIGAGPAGLMAAEGLAGKGLDVHVFEAKSSAGRKFLMAGKGGLNLTHSENLPAFVSRYGERSAEVSRWLELLSPDQLRAWAGELGVETFVGSSGRVFPKDMKAAPLLRAWLVRVQTQGVVLHTRHRWVGWQDGDALGFDTPEGRLQVRARAVVLALGGGSWARLGSDGAWLPLLEQRGVEVAVLKPSNCGFDVGLDGAASGGQIDRREFMAELLGASPQPARGWSPYFTERFAGQPFKSVALSFDDGKGHVFSRKGEFVATTTGVEGSLIYAVSAALREAIARDGQATVHLDLLPQLTPERVLVEVRHPRGSRSLASHLKGRLGLDGIKAAVLHEVLGKEGVADPVRLAHAIKALPITVVAARPIDEAISTAGGVRLEALDANGMCAAAPGVFCAGEMLDWEAPTGGYLLTACMASGLQAAQGVARYLKVDGAER</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="61" xmlns="http://uniprot.org/uniprot">
    <accession>A9BMP8</accession>
    <name>A9BMP8_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Alpha/beta hydrolase fold</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_4964</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX37593.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012206763.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_4964"/>
    <dbReference type="PRIDE" id="A9BMP8"/>
    <dbReference type="EnsemblBacteria" id="ABX37593">
        <property type="protein sequence ID" value="ABX37593"/>
        <property type="gene ID" value="Daci_4964"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_4964"/>
    <dbReference type="eggNOG" id="COG1073">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_020336_26_0_4"/>
    <dbReference type="OMA" id="DSAFWGW"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016787">
        <property type="term" value="F:hydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.1820">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029058">
        <property type="entry name" value="AB_hydrolase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000073">
        <property type="entry name" value="AB_hydrolase_1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12697">
        <property type="entry name" value="Abhydrolase_6"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53474">
        <property type="entry name" value="SSF53474"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="AB hydrolase-1" evidence="1">
        <location>
            <begin position="47"/>
            <end position="266"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF12697"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX37593.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="275" mass="29902" checksum="1E3C73310FD70CC0" modified="2008-01-15" version="1">MPSSCMTDIPASLNEIRIPTPQGSIYVRRWQAPAAGEGEQGPARAPIVLLHDSLGSVALWRDFPQQLAEATRRDVLAYDRLGFGQSDPYPGTLGPGFVAREAETAFPAVHQGLGLGDFIVLGHSVGGGMAAMVAARYGAQCKAVVTESAQAFVEDRTLQGIRAAQQDFARPGQLARLEKYHGDKAAWVLSAWVDTWLSPPFADYRLDEALERVRCPVLAIHGELDEFGSLVHPERIRDRASGPVEVEIVAGGGHVPHREQPERIAQRIARFLARV</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="56" xmlns="http://uniprot.org/uniprot">
    <accession>A9BMS2</accession>
    <name>A9BMS2_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Tail Collar domain protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_4988</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX37617.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012206787.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_4988"/>
    <dbReference type="PRIDE" id="A9BMS2"/>
    <dbReference type="EnsemblBacteria" id="ABX37617">
        <property type="protein sequence ID" value="ABX37617"/>
        <property type="gene ID" value="Daci_4988"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_4988"/>
    <dbReference type="eggNOG" id="COG4675">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_087872_0_0_4"/>
    <dbReference type="OMA" id="QPYLAMN"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.1340.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011083">
        <property type="entry name" value="Phage_tail_collar_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037053">
        <property type="entry name" value="Phage_tail_collar_dom_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07484">
        <property type="entry name" value="Collar"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Collar" evidence="1">
        <location>
            <begin position="7"/>
            <end position="63"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF07484"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX37617.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="163" mass="17091" checksum="A04F800E30DDB898" modified="2008-01-15" version="1">MSTPFLGEVRVFSFNFAPKGWALCNGQLLPINQNQALFSLLGTTYGGNGQTNFALPDLRGRMPMHMGAGHTLGEKAGEQAHTLTLPEIPQHSHAMAASGTTGQATSGNGNLPAAARGHYAQSGNTTMPALLANVGGSQPHLNMPPYLPLSFCMAMQGIFPSQT</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="38" xmlns="http://uniprot.org/uniprot">
    <accession>A9BN25</accession>
    <name>A9BN25_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Daci_5091</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="4" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX37720.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012206890.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="PRIDE" id="A9BN25"/>
    <dbReference type="EnsemblBacteria" id="ABX37720">
        <property type="protein sequence ID" value="ABX37720"/>
        <property type="gene ID" value="Daci_5091"/>
    </dbReference>
    <dbReference type="GeneID" id="60691169"/>
    <dbReference type="KEGG" id="dac:Daci_5091"/>
    <dbReference type="HOGENOM" id="CLU_2381427_0_0_4"/>
    <dbReference type="OMA" id="CGRTEAP"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="2">
        <location>
            <begin position="1"/>
            <end position="17"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5002734908" evidence="2">
        <location>
            <begin position="18"/>
            <end position="94"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="22"/>
            <end position="71"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Pro residues" evidence="1">
        <location>
            <begin position="30"/>
            <end position="46"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ABX37720.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="94" mass="8438" checksum="269C62E4CDAA0D8F" modified="2008-01-15" version="1">MKNSLILATVIAAAALAACGKKEEAPAPAPAPAVEAPAPAAPAPAEAPAAPAADAAAPAAPAADAAAPAPAADAAAADAAKAAADAAAKEATKQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="46" xmlns="http://uniprot.org/uniprot">
    <accession>A9BNM5</accession>
    <name>A9BNM5_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_5291</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX37920.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_5291"/>
    <dbReference type="PRIDE" id="A9BNM5"/>
    <dbReference type="EnsemblBacteria" id="ABX37920">
        <property type="protein sequence ID" value="ABX37920"/>
        <property type="gene ID" value="Daci_5291"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_5291"/>
    <dbReference type="eggNOG" id="ENOG50330AH">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_101709_0_0_4"/>
    <dbReference type="OMA" id="PAMACNS"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR021851">
        <property type="entry name" value="DUF3455"/>
    </dbReference>
    <dbReference type="Pfam" id="PF11937">
        <property type="entry name" value="DUF3455"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="56"/>
            <end position="76"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX37920.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="238" mass="25440" checksum="81672CEE2F5C885E" modified="2008-01-15" version="1">MHRLSVSNTQRIANRMRINFFSIQVNPAAALLRIPCVAPRTAVQGDIPQPIDLETFMSYILPLGLATMAALTLGACSSMDMGKSYSQSDLPAAVQVPAGHKVAMETVGIGQITYECRAKKDQAMEQEWAFVGPDARLTDRQGRVIGRYFGPPATWAHQDGSKVTATQVAVAPSGAGNIPMQLVKAEPATGMGAMQGVTYIQRVATRGGVAPAMACNSSTLGQKQVVQYQADYIIWKAA</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="47" xmlns="http://uniprot.org/uniprot">
    <accession>A9BNP5</accession>
    <name>A9BNP5_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Daci_5311</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="2" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX37940.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012207109.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_5311"/>
    <dbReference type="PRIDE" id="A9BNP5"/>
    <dbReference type="EnsemblBacteria" id="ABX37940">
        <property type="protein sequence ID" value="ABX37940"/>
        <property type="gene ID" value="Daci_5311"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_5311"/>
    <dbReference type="eggNOG" id="ENOG5032YG3">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_116730_2_0_4"/>
    <dbReference type="OMA" id="KHLDFRV"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR021295">
        <property type="entry name" value="DUF2867"/>
    </dbReference>
    <dbReference type="Pfam" id="PF11066">
        <property type="entry name" value="DUF2867"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ABX37940.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="175" mass="19009" checksum="2C172D6AD073AB40" modified="2008-01-15" version="1">MAQVILSPVPAGSALQDRLKTAYFHDSYQLQLPDDGSSPMALYLRCMGRTPGWIDFLMRLRNRVVAPFGIKDLGTLSGVDAQRQPSSYRVGDRAGIFRVHALSDSEVVLGDSDRHLDVQVSLMKLPRPEGLSSATFTVAMSTVVHVHNALGRIYMLGVTPAHRVIAPAVVAKLAS</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="63" xmlns="http://uniprot.org/uniprot">
    <accession>A9BNS5</accession>
    <name>A9BNS5_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="3">NUDIX hydrolase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Daci_5341</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="4" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX37970.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012207139.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_5341"/>
    <dbReference type="PRIDE" id="A9BNS5"/>
    <dbReference type="EnsemblBacteria" id="ABX37970">
        <property type="protein sequence ID" value="ABX37970"/>
        <property type="gene ID" value="Daci_5341"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_5341"/>
    <dbReference type="eggNOG" id="COG0494">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_040940_5_1_4"/>
    <dbReference type="OMA" id="YYIWGAT"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0010945">
        <property type="term" value="F:CoA pyrophosphatase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd03426">
        <property type="entry name" value="CoAse"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045121">
        <property type="entry name" value="CoAse"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015797">
        <property type="entry name" value="NUDIX_hydrolase-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000086">
        <property type="entry name" value="NUDIX_hydrolase_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR12992">
        <property type="entry name" value="PTHR12992"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00293">
        <property type="entry name" value="NUDIX"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55811">
        <property type="entry name" value="SSF55811"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51462">
        <property type="entry name" value="NUDIX"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Nudix hydrolase" evidence="2">
        <location>
            <begin position="77"/>
            <end position="207"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="22"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS51462"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ABX37970.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="242" mass="26437" checksum="274FC64A9AD42970" modified="2008-01-15" version="1">MSSLPDTAIPVPTGGPVPAAVPSIADPRMAQLIGKDSHLPAVPPEARTPEALRQRFALPPQWAPEVVREKRFSDRQPTDAAVLVPIVMRPEPTVLLTERTAHLSTHSGQVAFPGGKRDPEDASAQATALREAHEEVGLAASDVQVLGTLPIYITGTAFLITPVVALVDPRAHLNPNPYEVADVFEVPLAFLLDPANHERHSMVWNGVPREWFAMPYQDGDRQRYIWGATAGMLRNLYRFLSA</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="65" xmlns="http://uniprot.org/uniprot">
    <accession>A9BNV4</accession>
    <name>A9BNV4_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="6">Fmu (Sun) domain protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ordered locus">Daci_5370</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="7" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="4">Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB/NOP family.</text>
    </comment>
    <comment type="caution">
        <text evidence="4">Lacks conserved residue(s) required for the propagation of feature annotation.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX37999.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_5370"/>
    <dbReference type="PRIDE" id="A9BNV4"/>
    <dbReference type="EnsemblBacteria" id="ABX37999">
        <property type="protein sequence ID" value="ABX37999"/>
        <property type="gene ID" value="Daci_5370"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_5370"/>
    <dbReference type="eggNOG" id="COG0144">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_005316_0_2_4"/>
    <dbReference type="OMA" id="PDAKWKL"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008168">
        <property type="term" value="F:methyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003723">
        <property type="term" value="F:RNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0001510">
        <property type="term" value="P:RNA methylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.150">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR031341">
        <property type="entry name" value="Methyltr_RsmF_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001678">
        <property type="entry name" value="MeTrfase_RsmB/NOP2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023267">
        <property type="entry name" value="RCMT"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029063">
        <property type="entry name" value="SAM-dependent_MTases_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR22807">
        <property type="entry name" value="PTHR22807"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01189">
        <property type="entry name" value="Methyltr_RsmB-F"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF17125">
        <property type="entry name" value="Methyltr_RsmF_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR02008">
        <property type="entry name" value="RCMTFAMILY"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53335">
        <property type="entry name" value="SSF53335"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51686">
        <property type="entry name" value="SAM_MT_RSMB_NOP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="1 4" id="KW-0489">Methyltransferase</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4" id="KW-0694">RNA-binding</keyword>
    <keyword evidence="3 4" id="KW-0949">S-adenosyl-L-methionine</keyword>
    <keyword evidence="2 4" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="SAM_MT_RSMB_NOP" evidence="5">
        <location>
            <begin position="183"/>
            <end position="469"/>
        </location>
    </feature>
    <feature type="active site" description="Nucleophile" evidence="4">
        <location>
            <position position="397"/>
        </location>
    </feature>
    <feature type="binding site" evidence="4">
        <location>
            <position position="297"/>
        </location>
        <ligand>
            <name>S-adenosyl-L-methionine</name>
            <dbReference type="ChEBI" id="CHEBI:59789"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="4">
        <location>
            <position position="344"/>
        </location>
        <ligand>
            <name>S-adenosyl-L-methionine</name>
            <dbReference type="ChEBI" id="CHEBI:59789"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022603"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022691"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU01023"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="PROSITE" id="PS51686"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="ABX37999.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="470" mass="50932" checksum="ADF7E083CDA84B52" modified="2008-01-15" version="1">MVAAPAGGCCGFRPVALSDLQGSGTIAPMHPKQLLDACAELVKRTLTFEHPADAVVSRFFRENRNLGPRERAALAETAYTVLRKKLLFESLARSGSGSRERRLAILGFAHSQEALARVAGKSEQGVKEALGFARAALSPQELQWLDACDAVRPDELMEPHRHNLPEWLVAPLKQQLGEDFWAFAQSMEQAAPLDLRVNALNAKRADVQKELADAGIAAEATPYSPWGLRVQGKPALARLDAFTRGAIEVQDEGSQLLALMLDAKRGEMVVDFCAGAGGKTLAIGASMRSTGRLYAFDVSGHRLEALKPRLARSGLSNVHPAAIAHERDDRVKRLAGKIDRVLVDAPCSGLGTLRRNPDLKWRQSAKAIEELTQKQAAILASAARLVKPGGRLVYATCSVLPQENEAIAEAFASEHSDFVAMDAGELLAQLKVEQGNALCSGGETGTQYLRLWPQRHETDGFFAAVWTRKP</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="85" xmlns="http://uniprot.org/uniprot">
    <accession>A9BP24</accession>
    <name>A9BP24_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="10">ABC transporter related</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="10" type="ordered locus">Daci_5440</name>
    </gene>
    <organism evidence="10 11">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="10 11" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="11">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="11" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="11">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX38069.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012207238.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_5440"/>
    <dbReference type="PRIDE" id="A9BP24"/>
    <dbReference type="EnsemblBacteria" id="ABX38069">
        <property type="protein sequence ID" value="ABX38069"/>
        <property type="gene ID" value="Daci_5440"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_5440"/>
    <dbReference type="eggNOG" id="COG4608">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_000604_1_23_4"/>
    <dbReference type="OMA" id="HLTACHY"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015833">
        <property type="term" value="P:peptide transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003593">
        <property type="entry name" value="AAA+_ATPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003439">
        <property type="entry name" value="ABC_transporter-like_ATP-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017871">
        <property type="entry name" value="ABC_transporter-like_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013563">
        <property type="entry name" value="Oligopep_ABC_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00005">
        <property type="entry name" value="ABC_tran"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08352">
        <property type="entry name" value="oligo_HPY"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00382">
        <property type="entry name" value="AAA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00211">
        <property type="entry name" value="ABC_TRANSPORTER_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50893">
        <property type="entry name" value="ABC_TRANSPORTER_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4 7" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="2" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="6" id="KW-0472">Membrane</keyword>
    <keyword evidence="3 7" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="11" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="5" id="KW-1278">Translocase</keyword>
    <keyword evidence="1" id="KW-0813">Transport</keyword>
    <feature type="domain" description="ABC transporter" evidence="9">
        <location>
            <begin position="33"/>
            <end position="273"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="8">
        <location>
            <begin position="1"/>
            <end position="20"/>
        </location>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <begin position="65"/>
            <end position="72"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022448"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022967"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00434"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="9">
        <source>
            <dbReference type="PROSITE" id="PS50893"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="EMBL" id="ABX38069.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="285" mass="31341" checksum="68619B10211BFF8C" modified="2008-01-15" version="1">MTGHPLQAPPVQTPPASDTPLLQVTGLARSYQLPRRSLWRAPEQVHALRGVDFTLTAGRSLGVVGESGSGKSTLARLVMALDTPSAGSVRLLGQDLHQLGRQALRTARRDFQMVFQDPYGSLDPRMTVEHIVCEPLLAQPASPERTARRDLARATLEQVGLRAQDLDKYPHEFSGGQRQRIAIARALITRPRLIVADEPVSALDVSVQAQVLNLLHDLQQQLGLSYLFISHDLAVVQHLCDDAIVLSEGRIVERGAPQQLFHAPQHPYTQALVRAVPRIALQHRA</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="86" xmlns="http://uniprot.org/uniprot">
    <accession>A9BP28</accession>
    <name>A9BP28_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Transcriptional regulator, AraC family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ordered locus">Daci_5444</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="6" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX38073.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012207242.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_5444"/>
    <dbReference type="PRIDE" id="A9BP28"/>
    <dbReference type="EnsemblBacteria" id="ABX38073">
        <property type="protein sequence ID" value="ABX38073"/>
        <property type="gene ID" value="Daci_5444"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_5444"/>
    <dbReference type="eggNOG" id="COG2207">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_047522_0_0_4"/>
    <dbReference type="OMA" id="FAYRTYW"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003700">
        <property type="term" value="F:DNA-binding transcription factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043565">
        <property type="term" value="F:sequence-specific DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR032687">
        <property type="entry name" value="AraC-type_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009057">
        <property type="entry name" value="Homeobox-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018060">
        <property type="entry name" value="HTH_AraC"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020449">
        <property type="entry name" value="Tscrpt_reg_HTH_AraC-type"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12625">
        <property type="entry name" value="Arabinose_bd"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12833">
        <property type="entry name" value="HTH_18"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00032">
        <property type="entry name" value="HTHARAC"/>
    </dbReference>
    <dbReference type="SMART" id="SM00342">
        <property type="entry name" value="HTH_ARAC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46689">
        <property type="entry name" value="SSF46689"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01124">
        <property type="entry name" value="HTH_ARAC_FAMILY_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0804">Transcription</keyword>
    <keyword evidence="1" id="KW-0805">Transcription regulation</keyword>
    <feature type="domain" description="HTH araC/xylS-type" evidence="4">
        <location>
            <begin position="238"/>
            <end position="336"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023015"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023163"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="PROSITE" id="PS01124"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="ABX38073.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="341" mass="38138" checksum="D14DBBD11030D5C4" modified="2008-01-15" version="1">MPQTTAHTIAIAQVLQIVQGVQRNGMDVPAILRRAGIAPALLDAPLSRVTQAQYAALIRVLRRVCRDELWGLCRHPLPVGSFAQACRTMLPCRTLGEALQAGLRFYRLVLRDFAPRLQVVDGVARIAMVSLRERDAPLAYAERSFCFLGYGVMSWLVSRRIELTGVCAPAGASMPYGTEAQRLFLAPLQRDRDFTGLEFDARWLELPVVQTPESLAEFLDQAAMGLVIRYRDRTRLGERIRRLLRRDLAGELPSLEQVGAALSMTPQTLRRRLRDEGLGFQSLKDDLRRDAAIELLNRPDLTLADIAARVGFAEASTFHRAFKGWTGLPPGAYRQAQHRGR</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="43" xmlns="http://uniprot.org/uniprot">
    <accession>A9BP97</accession>
    <name>A9BP97_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_0014</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX32661.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_0014"/>
    <dbReference type="PRIDE" id="A9BP97"/>
    <dbReference type="EnsemblBacteria" id="ABX32661">
        <property type="protein sequence ID" value="ABX32661"/>
        <property type="gene ID" value="Daci_0014"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_0014"/>
    <dbReference type="eggNOG" id="COG0727">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_132545_0_0_4"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005358">
        <property type="entry name" value="Puta_zinc/iron-chelating_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03692">
        <property type="entry name" value="CxxCxxCC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="43"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX32661.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="172" mass="19247" checksum="507F283AC8FF9978" modified="2008-01-15" version="1">MDAGAASPKDPPPRLATPARQPPPGFLTKNSGPAHAHPPTMRSPISIVDVDRLDSWSKYKPGMCDSCAANCCTMPLEVQLPDLVRLELVDPFEVDNVEPKLIAKRLMKMRLIDHYNPKHNIFTMARRASGDCNFLDAQSRRCTVYDKRPETCRLHPKKGPKPGFCAYGHKDR</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="67" xmlns="http://uniprot.org/uniprot">
    <accession>A9BPH8</accession>
    <name>A9BPH8_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="1">L-carnitine dehydratase/bile acid-inducible protein F</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Daci_0199</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="2" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX32845.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012202138.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_0199"/>
    <dbReference type="PRIDE" id="A9BPH8"/>
    <dbReference type="EnsemblBacteria" id="ABX32845">
        <property type="protein sequence ID" value="ABX32845"/>
        <property type="gene ID" value="Daci_0199"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_0199"/>
    <dbReference type="eggNOG" id="COG1804">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_033975_1_1_4"/>
    <dbReference type="OMA" id="LIVCNIS"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003824">
        <property type="term" value="F:catalytic activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.1540.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.10540">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003673">
        <property type="entry name" value="CoA-Trfase_fam_III"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR044855">
        <property type="entry name" value="CoA-Trfase_III_dom3_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023606">
        <property type="entry name" value="CoA-Trfase_III_dom_1_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02515">
        <property type="entry name" value="CoA_transf_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF89796">
        <property type="entry name" value="SSF89796"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ABX32845.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="400" mass="42920" checksum="ACE2F07BE5B6A1F8" modified="2008-01-15" version="1">MTQQRLRPLDGTTVVSLEHAVAAPFCTRQLADLGARVIKVERPGSGDFARGYDQRVQGQSSHFTWINRSKQSLALDLKQDEAMQALLQLLEGADVLVQNLAPGAAARMGLSYAALRERFPRLIVCDISGYGADGPYRDKKAYDLLIQSEAGFLSVTGTPEVPSKAGISVADIAAGMYAYTNILSALLLRGRTGEGSHIDVSMLEALGEWMGYPMYYAFDGAPPPPRTGASHASIYPYGPFEAGDGGTVMLGLQNEREWKLFCEQVLLQPALAADARFDSNARRNANREELRALILGVFNALDAAQVVQRLDAAGIANARVNDMAGLWAHPQLAARQRWCSVDTPAGPVQALLPPGANSAFDYRMEAVPAVGEHSAAILAELGWSAERIAALCPTPGKTAP</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="62" xmlns="http://uniprot.org/uniprot">
    <accession>A9BPJ2</accession>
    <name>A9BPJ2_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">PPK2 domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Daci_0213</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="4" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX32859.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012202152.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_0213"/>
    <dbReference type="PRIDE" id="A9BPJ2"/>
    <dbReference type="EnsemblBacteria" id="ABX32859">
        <property type="protein sequence ID" value="ABX32859"/>
        <property type="gene ID" value="Daci_0213"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_0213"/>
    <dbReference type="eggNOG" id="COG2326">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_048699_1_0_4"/>
    <dbReference type="OMA" id="RTHYENV"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016776">
        <property type="term" value="F:phosphotransferase activity, phosphate group as acceptor"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006797">
        <property type="term" value="P:polyphosphate metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR022300">
        <property type="entry name" value="PPK2-rel_1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR022488">
        <property type="entry name" value="PPK2-related"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03976">
        <property type="entry name" value="PPK2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR03709">
        <property type="entry name" value="PPK2_rel_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="PPK2" evidence="2">
        <location>
            <begin position="52"/>
            <end position="269"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="21"/>
            <end position="52"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="23"/>
            <end position="37"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF03976"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ABX32859.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="290" mass="33021" checksum="F94F8CABDE8EECA3" modified="2008-01-15" version="1">MDAFNPFSSRDAAVQKLWEQWQPRSAKSDKDKPIALADFDPGAKPFSNGNGKTEDKAAVEALAEEIDALQNLLYADRRYKLLVVLQGTDTAGKDGTIRGVFGRTSALGVNAVGWKAPTDAERAHDYLWRIHQRVPGAGEITVFNRSHYEDVLVPVVNGWITPEQQRQRFAHINDFERMLSETGTVVVKFLLHISADEQRARLQERLDDPAKHWKFDENDMKVRTQWKDYQQAYGQLLGATHTPWAPWTIVPADSKTHRNLMIATLLREVMRNLDLRFPEGDPALKDYKIT</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="42" xmlns="http://uniprot.org/uniprot">
    <accession>A9BPY6</accession>
    <name>A9BPY6_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Daci_0555</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="2" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX33201.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012202487.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_0555"/>
    <dbReference type="PRIDE" id="A9BPY6"/>
    <dbReference type="EnsemblBacteria" id="ABX33201">
        <property type="protein sequence ID" value="ABX33201"/>
        <property type="gene ID" value="Daci_0555"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_0555"/>
    <dbReference type="eggNOG" id="ENOG5033UCY">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_1127575_0_0_4"/>
    <dbReference type="OMA" id="WNNSECL"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ABX33201.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="248" mass="27831" checksum="F697C5987E7EB240" modified="2008-01-15" version="1">MARTTDEIGLAAELWSPLLKQRFEALFAVASRKSLRGWRQVPLVSAQVLVVDGNMPAPEAAGWMPCVVYVGGVPQGQHLERTQQRLATYLDMNFTLSDLIDMLDRAAVFLMDWTVRQQVATSHTLARALDDLQQQGVDCRYRFQLKAWVALPAPWNNSECLRALAMLCRGPMEVALLCEHSGMQARAVAELLRHPRLRSLLECSLRPAREDDLPPLRRSRAQASDTVPGLPRQWVQKLAGWIRRGGVA</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="63" xmlns="http://uniprot.org/uniprot">
    <accession>A9BQ50</accession>
    <name>A9BQ50_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="5">Flagellar hook-associated protein 2</fullName>
            <shortName evidence="5">HAP2</shortName>
        </recommendedName>
        <alternativeName>
            <fullName evidence="5">Flagellar cap protein</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="8" type="ordered locus">Daci_0619</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="9" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="5">Required for morphogenesis and for the elongation of the flagellar filament by facilitating polymerization of the flagellin monomers at the tip of growing filament. Forms a capping structure, which prevents flagellin subunits (transported through the central channel of the flagellum) from leaking out without polymerization at the distal end.</text>
    </comment>
    <comment type="subunit">
        <text evidence="2 5">Homopentamer.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="5">Secreted</location>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="5">Bacterial flagellum</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="1 5">Belongs to the FliD family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX33265.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012202551.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_0619"/>
    <dbReference type="PRIDE" id="A9BQ50"/>
    <dbReference type="EnsemblBacteria" id="ABX33265">
        <property type="protein sequence ID" value="ABX33265"/>
        <property type="gene ID" value="Daci_0619"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_0619"/>
    <dbReference type="eggNOG" id="COG1345">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_015182_5_0_4"/>
    <dbReference type="OMA" id="TLEWQRD"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009421">
        <property type="term" value="C:bacterial-type flagellum filament cap"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009424">
        <property type="term" value="C:bacterial-type flagellum hook"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005576">
        <property type="term" value="C:extracellular region"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0007155">
        <property type="term" value="P:cell adhesion"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010810">
        <property type="entry name" value="Flagellin_hook_IN_motif"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR040026">
        <property type="entry name" value="FliD"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010809">
        <property type="entry name" value="FliD_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003481">
        <property type="entry name" value="FliD_N"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30288">
        <property type="entry name" value="PTHR30288"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07196">
        <property type="entry name" value="Flagellin_IN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07195">
        <property type="entry name" value="FliD_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02465">
        <property type="entry name" value="FliD_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4 5" id="KW-0975">Bacterial flagellum</keyword>
    <keyword evidence="8" id="KW-0966">Cell projection</keyword>
    <keyword evidence="8" id="KW-0969">Cilium</keyword>
    <keyword evidence="3" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="8" id="KW-0282">Flagellum</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="5" id="KW-0964">Secreted</keyword>
    <feature type="domain" description="FliD_N" evidence="6">
        <location>
            <begin position="12"/>
            <end position="107"/>
        </location>
    </feature>
    <feature type="domain" description="FliD_C" evidence="7">
        <location>
            <begin position="224"/>
            <end position="458"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00009764"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00011255"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023054"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023143"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="RuleBase" id="RU362066"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="Pfam" id="PF02465"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="Pfam" id="PF07195"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="ABX33265.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="473" mass="49344" checksum="2FBE263DB3A6849C" modified="2008-01-15" version="1">MATLSSAGISGSGLDETMIAKLVALQRQSLVPLQQKASVLDSKISTFGQIKSLMSTLQDAATSLANADTWRLTNAATTNSAVAVSVTDANALPGSSVISVNKLARSQSVATGIMPKDTQFGAGKLTITMGAWNANGTQFSNPGTPLDIDIAAGAKLEDVVQAINSKGAGVVASVLKDAQGERLVLRSRSTGADSGFTVDASGDSSLSALAFNGAATSGSVAQYAQNAELTVNGITVQSTTNEFKQTLPGLNITVNQETAPATPVTVTVSSDTDGMKKKIQAFMDAYNALNDALSSSTKYDAESKVAGLLQGDSTTVGMTNSLRSVVSGTVDGGADTLKRLSDMGIQIQKGGKLAYGTTASDKTKLDAALKDPESMSKMFAAVGTDGQPNTQGLAARMKDFTRKALEFDGTFDTKSKSLQELKKSNGKSQDRINDQADSLEKRLREQYASLDKKMSGYSALSAYMNQQVSQWNK</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="47" xmlns="http://uniprot.org/uniprot">
    <accession>A9BQ91</accession>
    <name>A9BQ91_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Daci_0855</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="2" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX33501.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012202787.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_0855"/>
    <dbReference type="PRIDE" id="A9BQ91"/>
    <dbReference type="EnsemblBacteria" id="ABX33501">
        <property type="protein sequence ID" value="ABX33501"/>
        <property type="gene ID" value="Daci_0855"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_0855"/>
    <dbReference type="eggNOG" id="ENOG502ZU3U">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_092718_0_0_4"/>
    <dbReference type="OMA" id="EYYVYVE"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ABX33501.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="237" mass="26889" checksum="2ED5B1C1E42CEE71" modified="2008-01-15" version="1">MTCLALAPAGPSFAAPSFSTLLRHLRHLSDTVAHRALPRCAPRHVTELRIDVMQPLVEGELEAIHERLYQPGNKLHGLERRPLHDPQFQLHWREADGEWFAYVEDMERRCLAGYTVFNRLVEVDKRTDRRVRSPHSRFAPHYQRRGIASAVYRSVLDKGTCLVSGARQSPGAHGLWNHLARSYDGRYVGIGDSKSLIHLGRNVPDDVMDRLSTRRMLLGAGWTVESFAQAVRMQLPG</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="86" xmlns="http://uniprot.org/uniprot">
    <accession>A9BQG1</accession>
    <name>A9BQG1_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="10">Peptidase M24</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="10" type="ordered locus">Daci_0925</name>
    </gene>
    <organism evidence="10 11">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="10 11" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="11">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="11" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="11">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>Mn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29035"/>
        </cofactor>
    </comment>
    <comment type="similarity">
        <text evidence="7">Belongs to the peptidase M24B family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX33571.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012202857.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_0925"/>
    <dbReference type="PRIDE" id="A9BQG1"/>
    <dbReference type="EnsemblBacteria" id="ABX33571">
        <property type="protein sequence ID" value="ABX33571"/>
        <property type="gene ID" value="Daci_0925"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_0925"/>
    <dbReference type="eggNOG" id="COG0006">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_017266_1_0_4"/>
    <dbReference type="OMA" id="GWADTEL"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030145">
        <property type="term" value="F:manganese ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0070006">
        <property type="term" value="F:metalloaminopeptidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006508">
        <property type="term" value="P:proteolysis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.350.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.230.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007865">
        <property type="entry name" value="Aminopep_P_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029149">
        <property type="entry name" value="Creatin/AminoP/Spt16_NTD"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036005">
        <property type="entry name" value="Creatinase/aminopeptidase-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000994">
        <property type="entry name" value="Pept_M24"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001131">
        <property type="entry name" value="Peptidase_M24B_aminopep-P_CS"/>
    </dbReference>
    <dbReference type="Pfam" id="PF05195">
        <property type="entry name" value="AMP_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00557">
        <property type="entry name" value="Peptidase_M24"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM01011">
        <property type="entry name" value="AMP_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53092">
        <property type="entry name" value="SSF53092"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55920">
        <property type="entry name" value="SSF55920"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00491">
        <property type="entry name" value="PROLINE_PEPTIDASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="6" id="KW-0464">Manganese</keyword>
    <keyword evidence="3 7" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="5" id="KW-0482">Metalloprotease</keyword>
    <keyword evidence="2" id="KW-0645">Protease</keyword>
    <keyword evidence="11" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="AMP_N" evidence="9">
        <location>
            <begin position="1"/>
            <end position="131"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="8">
        <location>
            <begin position="373"/>
            <end position="394"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001936"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022670"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023049"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023211"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="RuleBase" id="RU000590"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="9">
        <source>
            <dbReference type="SMART" id="SM01011"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="EMBL" id="ABX33571.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="460" mass="50851" checksum="8C5DA24A349B2A9A" modified="2008-01-15" version="1">MTSVYAQRRARLAAQLGAGGIAIIPTAPERQRNRDTGYLYRHDSYFYYLTGFAEPNACLVLAADGTSVLFCQPKDLEREIWDGIRLGPEAAVATLGVSQAFSSAEIDTRLPRLLENRGRLWYPFATHEGLAVRVEGWLGQVRARVRFGALCPAEQGDLCTLLDEMRLVKDAHEQDIMRRAAAISAQAHIRAMQRSARMLRAGQEVREYHLDAELLHEFRQQGSQYVAYGSIVAAGANACVLHYQADKAPVHAGELVLIDAGCELDGYASDITRTFPADGRFTGPQRALYELVLDSQKAAVAATRAGARFNDPHDATVAVLAQGMLDLGLLDRKVYGNAQDVIEQRAFFQFYMHRTGHWLGMDVHDCGSYVEPSELGQSHERKDPLSGETITNRPSRILRPGMCTTIEPGIYVRPAAGVPEQFHNIGIRIEDDAIVTETGCELITRGVPVEPDEIEALMRD</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-05-25" version="43" xmlns="http://uniprot.org/uniprot">
    <accession>A9BQQ9</accession>
    <name>A9BQQ9_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_0115</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX32761.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_0115"/>
    <dbReference type="EnsemblBacteria" id="ABX32761">
        <property type="protein sequence ID" value="ABX32761"/>
        <property type="gene ID" value="Daci_0115"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_0115"/>
    <dbReference type="eggNOG" id="ENOG5033JGQ">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_198015_1_0_4"/>
    <dbReference type="OMA" id="HDHPIAP"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="26"/>
            <end position="47"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX32761.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="50" mass="5184" checksum="EFAE1E5F641A6472" modified="2008-01-15" version="1">MSHDPAANHATEATATDDATEAVVPYIPVILPLAGAVMMFLLAFIAVNMA</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="40" xmlns="http://uniprot.org/uniprot">
    <accession>A9BQV6</accession>
    <name>A9BQV6_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Daci_0265</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="2" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX32911.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_0265"/>
    <dbReference type="PRIDE" id="A9BQV6"/>
    <dbReference type="EnsemblBacteria" id="ABX32911">
        <property type="protein sequence ID" value="ABX32911"/>
        <property type="gene ID" value="Daci_0265"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_0265"/>
    <dbReference type="eggNOG" id="COG3514">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_140900_0_0_4"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025528">
        <property type="entry name" value="BrnA_antitoxin"/>
    </dbReference>
    <dbReference type="Pfam" id="PF14384">
        <property type="entry name" value="BrnA_antitoxin"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ABX32911.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="112" mass="12117" checksum="2C0B205195F15DA6" modified="2008-01-15" version="1">MVKSLKALQAMDTEKLAQAIEADAGEAVPGLRQALQEAKTGQFAAVHTPEQIAARKRGRPQGSVKADAKIATNIRFDPDVLQALKATGQGWQTRVNELLRADIESGRLKRSL</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="69" xmlns="http://uniprot.org/uniprot">
    <accession>A9BQZ5</accession>
    <name>A9BQZ5_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="3">FAD linked oxidase domain protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Daci_0304</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="4" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX32950.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_0304"/>
    <dbReference type="PRIDE" id="A9BQZ5"/>
    <dbReference type="EnsemblBacteria" id="ABX32950">
        <property type="protein sequence ID" value="ABX32950"/>
        <property type="gene ID" value="Daci_0304"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_0304"/>
    <dbReference type="eggNOG" id="COG0277">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_017779_0_0_4"/>
    <dbReference type="OMA" id="PLNASCW"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0071949">
        <property type="term" value="F:FAD binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016491">
        <property type="term" value="F:oxidoreductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.465.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016166">
        <property type="entry name" value="FAD-bd_PCMH"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036318">
        <property type="entry name" value="FAD-bd_PCMH-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016169">
        <property type="entry name" value="FAD-bd_PCMH_sub2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016164">
        <property type="entry name" value="FAD-linked_Oxase-like_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006094">
        <property type="entry name" value="Oxid_FAD_bind_N"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01565">
        <property type="entry name" value="FAD_binding_4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55103">
        <property type="entry name" value="SSF55103"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56176">
        <property type="entry name" value="SSF56176"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51387">
        <property type="entry name" value="FAD_PCMH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="FAD-binding PCMH-type" evidence="2">
        <location>
            <begin position="32"/>
            <end position="217"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="17"/>
            <end position="42"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS51387"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ABX32950.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="422" mass="44527" checksum="4B0AF21AF716E962" modified="2008-01-15" version="1">MASLPFRPGCFAPPAELQARRSKNSRVRTEAQKGPAATMQAMDSAQSHLLQIAQRVRAAAADATPLRIRGGGTKDFHGLALQGELLDTRALAGVVSYEPSELVVTVRAGTPLAEVEALLAAQGQCLAFEPPHFDGDSRNATVGGMVASGLSGPARASVGAVRDFVLGLEMINGQGELLRYGGQVMKNVAGYDVSRLMAGSWGALGLITEVSLKVLPVAPAEATLRFECTQQQALDWLNAWGGQPLPLNASCWLQEDGAAQGVLYLRLRGARAAVQAACERLGGERVQRMDPAHAAADWQACREQQLPWFTARAPGHALWRLSVPQTAPALALPDGCTGPLIEWHGALRWVQAPRALGHALRALAKAAGGSATLFRSEAADQPGAEPDFDAQAADATAALHARLKQAFDPAGIFNRGRLAAAW</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="43" xmlns="http://uniprot.org/uniprot">
    <accession>A9BR54</accession>
    <name>A9BR54_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Daci_0466</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="2" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX33112.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012202398.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_0466"/>
    <dbReference type="PRIDE" id="A9BR54"/>
    <dbReference type="EnsemblBacteria" id="ABX33112">
        <property type="protein sequence ID" value="ABX33112"/>
        <property type="gene ID" value="Daci_0466"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_0466"/>
    <dbReference type="eggNOG" id="ENOG5032S4W">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_187484_0_0_4"/>
    <dbReference type="OMA" id="WHGDDDV"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ABX33112.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="69" mass="7780" checksum="A9459FFED9404E5A" modified="2008-01-15" version="1">MTRTTTSRPRMAAIYAPGTVRARRWRGDGDVCGYLPPSGWTTRADLADIHPITGRALPRAVWWLIKTKE</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="94" xmlns="http://uniprot.org/uniprot">
    <accession>A9BR67</accession>
    <name>A9BR67_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="8">Heavy metal translocating P-type ATPase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="8" type="ordered locus">Daci_0479</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="9" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="6">Cell membrane</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="1 6">Belongs to the cation transport ATPase (P-type) (TC 3.A.3) family. Type IB subfamily.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX33125.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012202411.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_0479"/>
    <dbReference type="PRIDE" id="A9BR67"/>
    <dbReference type="EnsemblBacteria" id="ABX33125">
        <property type="protein sequence ID" value="ABX33125"/>
        <property type="gene ID" value="Daci_0479"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_0479"/>
    <dbReference type="eggNOG" id="COG2217">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_001771_6_1_4"/>
    <dbReference type="OMA" id="HLHLMET"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016887">
        <property type="term" value="F:ATP hydrolysis activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0019829">
        <property type="term" value="F:ATPase-coupled cation transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd00371">
        <property type="entry name" value="HMA"/>
        <property type="match status" value="4"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.1110.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.1000">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023299">
        <property type="entry name" value="ATPase_P-typ_cyto_dom_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018303">
        <property type="entry name" value="ATPase_P-typ_P_site"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023298">
        <property type="entry name" value="ATPase_P-typ_TM_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008250">
        <property type="entry name" value="ATPase_P-typ_transduc_dom_A_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036412">
        <property type="entry name" value="HAD-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023214">
        <property type="entry name" value="HAD_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006121">
        <property type="entry name" value="HMA_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036163">
        <property type="entry name" value="HMA_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027256">
        <property type="entry name" value="P-typ_ATPase_IB"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001757">
        <property type="entry name" value="P_typ_ATPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR044492">
        <property type="entry name" value="P_typ_ATPase_HD_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00403">
        <property type="entry name" value="HMA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SFLD" id="SFLDF00027">
        <property type="entry name" value="p-type_atpase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55008">
        <property type="entry name" value="SSF55008"/>
        <property type="match status" value="4"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56784">
        <property type="entry name" value="SSF56784"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF81653">
        <property type="entry name" value="SSF81653"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF81665">
        <property type="entry name" value="SSF81665"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01525">
        <property type="entry name" value="ATPase-IB_hvy"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01494">
        <property type="entry name" value="ATPase_P-type"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00154">
        <property type="entry name" value="ATPASE_E1_E2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50846">
        <property type="entry name" value="HMA_2"/>
        <property type="match status" value="4"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="6" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="5 6" id="KW-0472">Membrane</keyword>
    <keyword evidence="6" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="6" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-1278">Translocase</keyword>
    <keyword evidence="2 6" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="4 6" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="344"/>
            <end position="363"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="375"/>
            <end position="391"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="397"/>
            <end position="415"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="545"/>
            <end position="567"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="579"/>
            <end position="606"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="877"/>
            <end position="900"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="906"/>
            <end position="925"/>
        </location>
    </feature>
    <feature type="domain" description="HMA" evidence="7">
        <location>
            <begin position="1"/>
            <end position="57"/>
        </location>
    </feature>
    <feature type="domain" description="HMA" evidence="7">
        <location>
            <begin position="63"/>
            <end position="127"/>
        </location>
    </feature>
    <feature type="domain" description="HMA" evidence="7">
        <location>
            <begin position="157"/>
            <end position="221"/>
        </location>
    </feature>
    <feature type="domain" description="HMA" evidence="7">
        <location>
            <begin position="232"/>
            <end position="296"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00006024"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022967"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="RuleBase" id="RU362081"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="PROSITE" id="PS50846"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="ABX33125.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="939" mass="100089" checksum="2CEC33E84CEE5EBF" modified="2008-01-15" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2020-10-07" version="45" xmlns="http://uniprot.org/uniprot">
    <accession>A9BRI4</accession>
    <name>A9BRI4_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="1">PAAR repeat-containing protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Daci_0699</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="2" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX33345.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_0699"/>
    <dbReference type="EnsemblBacteria" id="ABX33345">
        <property type="protein sequence ID" value="ABX33345"/>
        <property type="gene ID" value="Daci_0699"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_0699"/>
    <dbReference type="eggNOG" id="COG4104">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_148568_5_0_4"/>
    <dbReference type="OMA" id="MGDTTAH"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008727">
        <property type="entry name" value="PAAR_motif"/>
    </dbReference>
    <dbReference type="Pfam" id="PF05488">
        <property type="entry name" value="PAAR_motif"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ABX33345.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="113" mass="11134" checksum="035E680F76AB2022" modified="2008-01-15" version="1">MGQPAARVGDMHACPAHGGGAILSGQANVLIGGMPAARVTDKALCPRSPPDALAEGEATVLIGGRPAARMGDRTVHVGVVVSGCTTVWIGANAGRCLAEAAQSGAAFVSAMED</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="93" xmlns="http://uniprot.org/uniprot">
    <accession>A9BRM8</accession>
    <name>A9BRM8_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="5 10">Phosphoglycolate phosphatase</fullName>
            <shortName evidence="10">PGP</shortName>
            <shortName evidence="10">PGPase</shortName>
            <ecNumber evidence="5 10">3.1.3.18</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="10" type="primary">gph</name>
        <name evidence="11" type="ordered locus">Daci_0743</name>
    </gene>
    <organism evidence="11 12">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="11 12" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="12">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="12" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="12">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="10">Specifically catalyzes the dephosphorylation of 2-phosphoglycolate. Is involved in the dissimilation of the intracellular 2-phosphoglycolate formed during the DNA repair of 3'-phosphoglycolate ends, a major class of DNA lesions induced by oxidative stress.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1 10">
            <text>2-phosphoglycolate + H2O = glycolate + phosphate</text>
            <dbReference type="Rhea" id="RHEA:14369"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:29805"/>
            <dbReference type="ChEBI" id="CHEBI:43474"/>
            <dbReference type="ChEBI" id="CHEBI:58033"/>
            <dbReference type="EC" id="3.1.3.18"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="2 10">
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </cofactor>
    </comment>
    <comment type="pathway">
        <text evidence="3 10">Organic acid metabolism; glycolate biosynthesis; glycolate from 2-phosphoglycolate: step 1/1.</text>
    </comment>
    <comment type="similarity">
        <text evidence="4 10">Belongs to the HAD-like hydrolase superfamily. CbbY/CbbZ/Gph/YieH family.</text>
    </comment>
    <dbReference type="EC" id="3.1.3.18" evidence="5 10"/>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX33389.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012202675.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_0743"/>
    <dbReference type="PRIDE" id="A9BRM8"/>
    <dbReference type="EnsemblBacteria" id="ABX33389">
        <property type="protein sequence ID" value="ABX33389"/>
        <property type="gene ID" value="Daci_0743"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_0743"/>
    <dbReference type="eggNOG" id="COG0546">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_045011_19_1_4"/>
    <dbReference type="OMA" id="YPMLRVA"/>
    <dbReference type="UniPathway" id="UPA00865">
        <property type="reaction ID" value="UER00834"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008967">
        <property type="term" value="F:phosphoglycolate phosphatase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005975">
        <property type="term" value="P:carbohydrate metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046295">
        <property type="term" value="P:glycolate biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniPathway"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.150.240">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.1000">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00495">
        <property type="entry name" value="GPH_hydrolase_bact"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036412">
        <property type="entry name" value="HAD-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006439">
        <property type="entry name" value="HAD-SF_hydro_IA"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041492">
        <property type="entry name" value="HAD_2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023214">
        <property type="entry name" value="HAD_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023198">
        <property type="entry name" value="PGP-like_dom2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006346">
        <property type="entry name" value="PGPase/MupP"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037512">
        <property type="entry name" value="PGPase_prok"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13419">
        <property type="entry name" value="HAD_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00413">
        <property type="entry name" value="HADHALOGNASE"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56784">
        <property type="entry name" value="SSF56784"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01549">
        <property type="entry name" value="HAD-SF-IA-v1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01509">
        <property type="entry name" value="HAD-SF-IA-v3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01449">
        <property type="entry name" value="PGP_bact"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="9 10" id="KW-0119">Carbohydrate metabolism</keyword>
    <keyword evidence="7 10" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="8 10" id="KW-0460">Magnesium</keyword>
    <keyword evidence="6 10" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="12" id="KW-1185">Reference proteome</keyword>
    <feature type="active site" description="Nucleophile" evidence="10">
        <location>
            <position position="19"/>
        </location>
    </feature>
    <feature type="binding site" evidence="10">
        <location>
            <position position="19"/>
        </location>
        <ligand>
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="10">
        <location>
            <position position="21"/>
        </location>
        <ligand>
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="10">
        <location>
            <position position="181"/>
        </location>
        <ligand>
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00000830"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00001946"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00004818"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00006171"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00013078"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00022842"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00023277"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00495"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="EMBL" id="ABX33389.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="225" mass="24149" checksum="135E11F5C4EBD444" modified="2008-01-15" version="1">MISNFIPLNPQQLDAAIVDLDGTMVNTLGDFAEALNRMLADLQLPAIAPQAIETMVGKGSEHLIRSVLAHVGAADVDAIYGQAWQRYEHHYLQLNGQFAEVYPGVLEGLQALRARGLRLACLTNKPLSFAQPLLAQKGLAPLFEQVFGGDSFERKKPDPLPLLKTCEALGTSPARTLMLGDSSNDAQAARAAGCPVVLVSYGYNHGQPVRQVDADGFVDALTELA</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="60" xmlns="http://uniprot.org/uniprot">
    <accession>A9BRS9</accession>
    <name>A9BRS9_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Sigma 54 modulation protein/ribosomal protein S30EA</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_1000</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX33646.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012202932.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_1000"/>
    <dbReference type="PRIDE" id="A9BRS9"/>
    <dbReference type="EnsemblBacteria" id="ABX33646">
        <property type="protein sequence ID" value="ABX33646"/>
        <property type="gene ID" value="Daci_1000"/>
    </dbReference>
    <dbReference type="GeneID" id="60685562"/>
    <dbReference type="KEGG" id="dac:Daci_1000"/>
    <dbReference type="eggNOG" id="COG1544">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_071472_3_1_4"/>
    <dbReference type="OMA" id="NLTGHHI"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005840">
        <property type="term" value="C:ribosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0044238">
        <property type="term" value="P:primary metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006417">
        <property type="term" value="P:regulation of translation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd00552">
        <property type="entry name" value="RaiA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.160.100">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036567">
        <property type="entry name" value="RHF-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003489">
        <property type="entry name" value="RHF/RaiA"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02482">
        <property type="entry name" value="Ribosomal_S30AE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF69754">
        <property type="entry name" value="SSF69754"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00741">
        <property type="entry name" value="yfiA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0687">Ribonucleoprotein</keyword>
    <keyword evidence="2" id="KW-0689">Ribosomal protein</keyword>
    <keyword evidence="1" id="KW-0810">Translation regulation</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022845"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX33646.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="119" mass="13479" checksum="DAF01DAD2A4E8580" modified="2008-01-15" version="1">MNLTISGHHLEVTPSLRSYVMAKLERILRHFDQVVDVKVLLTVHNQKEKEKRQRAGCTLRVKGQDLFVETSHFDLYAAVDALADKLDRVVVRYKTRQQGSRYGSAKRLDDAGLTLASVG</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="55" xmlns="http://uniprot.org/uniprot">
    <accession>A9BRV1</accession>
    <name>A9BRV1_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">Phytase-like domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Daci_1022</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="4" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX33668.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_1022"/>
    <dbReference type="PRIDE" id="A9BRV1"/>
    <dbReference type="EnsemblBacteria" id="ABX33668">
        <property type="protein sequence ID" value="ABX33668"/>
        <property type="gene ID" value="Daci_1022"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_1022"/>
    <dbReference type="eggNOG" id="COG4222">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_047242_0_0_4"/>
    <dbReference type="OMA" id="PQREVNG"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027372">
        <property type="entry name" value="Phytase-like_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13449">
        <property type="entry name" value="Phytase-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="1">
        <location>
            <begin position="1"/>
            <end position="31"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5002733029" description="Phytase-like domain-containing protein" evidence="1">
        <location>
            <begin position="32"/>
            <end position="401"/>
        </location>
    </feature>
    <feature type="domain" description="Phytase-like" evidence="2">
        <location>
            <begin position="70"/>
            <end position="380"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF13449"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ABX33668.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="401" mass="43100" checksum="0A1226C94371E8E2" modified="2008-01-15" version="1">MRWPRLRWRPDNGLTALFKAASLVLSGLLLAGCAAPPQALPAPQPTACARLQWLGSTTIARDEPIHGATTGGISGLNYDARRGDFVAISDDRSARGPARWVRLRIEQLDAGQRAGPNPWQAQVTEVHPLLDAEGRWLRPRHAAPATQPVPDPEAIRLLPDGGLLWTDEGDPGRGFGTSLVRTDATGRQIARWFYAFKDEDGRPGLRSNFGFEGLAVTPDGQQAWLALEAPLRQDGPRASAATAGAPVRISLVSLDDGRLLRQIAYQPDAVPAASWALPQREVNGISEILPDGPDHLLVLERSYSPGHGFGARLYRIGLDAPGTLALASFAQTPPQVAVKQLVADLSTVQPGRLDNMEAMSWGPPLPDGTRVLVFASDDNFNPAQANQILITAYRPSPPCAP</sequence>
</entry>
<entry dataset="Swiss-Prot" created="2009-04-14" modified="2022-08-03" version="71" xmlns="http://uniprot.org/uniprot">
    <accession>A9BRX2</accession>
    <name>RS13_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">30S ribosomal protein S13</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="1" type="primary">rpsM</name>
        <name type="ordered locus">Daci_1044</name>
    </gene>
    <organism>
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference key="1">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain>DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="1">Located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA. In the 70S ribosome it contacts the 23S rRNA (bridge B1a) and protein L5 of the 50S subunit (bridge B1b), connecting the 2 subunits; these bridges are implicated in subunit movement. Contacts the tRNAs in the A and P-sites.</text>
    </comment>
    <comment type="subunit">
        <text evidence="1">Part of the 30S ribosomal subunit. Forms a loose heterodimer with protein S19. Forms two bridges to the 50S subunit in the 70S ribosome.</text>
    </comment>
    <comment type="similarity">
        <text evidence="1">Belongs to the universal ribosomal protein uS13 family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX33689.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012202975.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A9BRX2"/>
    <dbReference type="SMR" id="A9BRX2"/>
    <dbReference type="STRING" id="398578.Daci_1044"/>
    <dbReference type="PRIDE" id="A9BRX2"/>
    <dbReference type="EnsemblBacteria" id="ABX33689">
        <property type="protein sequence ID" value="ABX33689"/>
        <property type="gene ID" value="Daci_1044"/>
    </dbReference>
    <dbReference type="GeneID" id="60685605"/>
    <dbReference type="KEGG" id="dac:Daci_1044"/>
    <dbReference type="eggNOG" id="COG0099">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_103849_1_2_4"/>
    <dbReference type="OMA" id="YRGLRHK"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005840">
        <property type="term" value="C:ribosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0019843">
        <property type="term" value="F:rRNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003735">
        <property type="term" value="F:structural constituent of ribosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000049">
        <property type="term" value="F:tRNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006412">
        <property type="term" value="P:translation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="4.10.910.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01315">
        <property type="entry name" value="Ribosomal_S13_S18"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027437">
        <property type="entry name" value="30s_Rbsml_prot_S13_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001892">
        <property type="entry name" value="Ribosomal_S13"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010979">
        <property type="entry name" value="Ribosomal_S13-like_H2TH"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019980">
        <property type="entry name" value="Ribosomal_S13_bac-type"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018269">
        <property type="entry name" value="Ribosomal_S13_CS"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10871:SF1">
        <property type="entry name" value="PTHR10871:SF1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00416">
        <property type="entry name" value="Ribosomal_S13"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF002134">
        <property type="entry name" value="Ribosomal_S13"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46946">
        <property type="entry name" value="SSF46946"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR03631">
        <property type="entry name" value="uS13_bact"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00646">
        <property type="entry name" value="RIBOSOMAL_S13_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50159">
        <property type="entry name" value="RIBOSOMAL_S13_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword id="KW-1185">Reference proteome</keyword>
    <keyword id="KW-0687">Ribonucleoprotein</keyword>
    <keyword id="KW-0689">Ribosomal protein</keyword>
    <keyword id="KW-0694">RNA-binding</keyword>
    <keyword id="KW-0699">rRNA-binding</keyword>
    <keyword id="KW-0820">tRNA-binding</keyword>
    <feature type="chain" id="PRO_1000141253" description="30S ribosomal protein S13">
        <location>
            <begin position="1"/>
            <end position="121"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="94"/>
            <end position="121"/>
        </location>
    </feature>
    <evidence type="ECO:0000255" key="1">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01315"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <sequence length="121" mass="13570" checksum="11A076FDAE2BB12D" modified="2008-01-15" version="1">MARIAGINIPPHQHAEIGLTAIYGIGRTTARKICEAAGIAYSKKIKELTDGDLEKIRDQLTSLTLEGDLRRETTMNIKRLMDIGCYRGFRHRRGLPMRGQRTRTNARTRKGPRKGAAALKK</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="65" xmlns="http://uniprot.org/uniprot">
    <accession>A9BS70</accession>
    <name>A9BS70_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Peptidoglycan-binding LysM</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Daci_0834</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="4" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX33480.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012202766.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_0834"/>
    <dbReference type="CAZy" id="CBM50">
        <property type="family name" value="Carbohydrate-Binding Module Family 50"/>
    </dbReference>
    <dbReference type="PRIDE" id="A9BS70"/>
    <dbReference type="EnsemblBacteria" id="ABX33480">
        <property type="protein sequence ID" value="ABX33480"/>
        <property type="gene ID" value="Daci_0834"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_0834"/>
    <dbReference type="eggNOG" id="COG1652">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_050533_0_0_4"/>
    <dbReference type="OMA" id="PELWGMN"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="CDD" id="cd00118">
        <property type="entry name" value="LysM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.10.350.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018392">
        <property type="entry name" value="LysM_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036779">
        <property type="entry name" value="LysM_dom_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01476">
        <property type="entry name" value="LysM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00257">
        <property type="entry name" value="LysM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54106">
        <property type="entry name" value="SSF54106"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51782">
        <property type="entry name" value="LYSM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="1">
        <location>
            <begin position="1"/>
            <end position="25"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5002735985" evidence="1">
        <location>
            <begin position="26"/>
            <end position="401"/>
        </location>
    </feature>
    <feature type="domain" description="LysM" evidence="2">
        <location>
            <begin position="57"/>
            <end position="106"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS51782"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ABX33480.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="401" mass="43662" checksum="96479A166475738C" modified="2008-01-15" version="1">MTAFATARTWTVATALIAAFAAAHAQQLPVTASQRSAAQQVAQQGVPVGELAPDAPDSYTVKRGDTLWGISGMYLRRPWRWPELWGMNMQAIANPHLIYPGQVLYLDKRDGYARLSTARPMGDGGEPGVVRVSPSTRSESLAQAALPTLQPHLIEPFLAEPLVVDAETLLRAPRLIATTDERVLMASGDRAYARGTAEAPLRKGDGLPRQYRVFRDAVALKDPISGEVLGYEAKYLGLADLIEGETSLEIVDSKGEKHEQASPATVDLSRAKTEMRAGDRLLPAPERTYMNYAPHAPQAAVKAHVVSLYGDQAVRWAANNQVIAINKGTQDGMDVGTVLELIRRGVRIVDKTGDKKEEVQLPDERNGYAMVFRTFDRVSYALILEARRGVEVGDSLTSPAP</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="77" xmlns="http://uniprot.org/uniprot">
    <accession>A9BSB1</accession>
    <name>A9BSB1_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(S)</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ordered locus">Daci_1080</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="6" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX33725.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012203011.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_1080"/>
    <dbReference type="PRIDE" id="A9BSB1"/>
    <dbReference type="EnsemblBacteria" id="ABX33725">
        <property type="protein sequence ID" value="ABX33725"/>
        <property type="gene ID" value="Daci_1080"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_1080"/>
    <dbReference type="eggNOG" id="COG5000">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="eggNOG" id="COG5001">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_000445_70_20_4"/>
    <dbReference type="OMA" id="PQWQTIR"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="CDD" id="cd01948">
        <property type="entry name" value="EAL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="CDD" id="cd01949">
        <property type="entry name" value="GGDEF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="CDD" id="cd00130">
        <property type="entry name" value="PAS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.20.20.450">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.70.270">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001633">
        <property type="entry name" value="EAL_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035919">
        <property type="entry name" value="EAL_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000160">
        <property type="entry name" value="GGDEF_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029787">
        <property type="entry name" value="Nucleotide_cyclase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001610">
        <property type="entry name" value="PAC"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000014">
        <property type="entry name" value="PAS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000700">
        <property type="entry name" value="PAS-assoc_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035965">
        <property type="entry name" value="PAS-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043128">
        <property type="entry name" value="Rev_trsase/Diguanyl_cyclase"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00563">
        <property type="entry name" value="EAL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00990">
        <property type="entry name" value="GGDEF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13426">
        <property type="entry name" value="PAS_9"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00052">
        <property type="entry name" value="EAL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00267">
        <property type="entry name" value="GGDEF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00086">
        <property type="entry name" value="PAC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00091">
        <property type="entry name" value="PAS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF141868">
        <property type="entry name" value="SSF141868"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55073">
        <property type="entry name" value="SSF55073"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55785">
        <property type="entry name" value="SSF55785"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00254">
        <property type="entry name" value="GGDEF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00229">
        <property type="entry name" value="sensory_box"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50883">
        <property type="entry name" value="EAL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50887">
        <property type="entry name" value="GGDEF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50113">
        <property type="entry name" value="PAC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50112">
        <property type="entry name" value="PAS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="PAS" evidence="1">
        <location>
            <begin position="75"/>
            <end position="121"/>
        </location>
    </feature>
    <feature type="domain" description="PAC" evidence="2">
        <location>
            <begin position="148"/>
            <end position="200"/>
        </location>
    </feature>
    <feature type="domain" description="GGDEF" evidence="4">
        <location>
            <begin position="232"/>
            <end position="366"/>
        </location>
    </feature>
    <feature type="domain" description="EAL" evidence="3">
        <location>
            <begin position="375"/>
            <end position="629"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS50112"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS50113"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="PROSITE" id="PS50883"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="PROSITE" id="PS50887"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="ABX33725.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="636" mass="69489" checksum="4C0BD837D2516B10" modified="2008-01-15" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="67" xmlns="http://uniprot.org/uniprot">
    <accession>A9BSG0</accession>
    <name>A9BSG0_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="4">ABC-1 domain protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ordered locus">Daci_1129</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="5" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX33774.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012203060.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_1129"/>
    <dbReference type="PRIDE" id="A9BSG0"/>
    <dbReference type="EnsemblBacteria" id="ABX33774">
        <property type="protein sequence ID" value="ABX33774"/>
        <property type="gene ID" value="Daci_1129"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_1129"/>
    <dbReference type="eggNOG" id="COG0661">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_006533_0_2_4"/>
    <dbReference type="OMA" id="GCESFHA"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004147">
        <property type="entry name" value="ABC1_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011009">
        <property type="entry name" value="Kinase-like_dom_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03109">
        <property type="entry name" value="ABC1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56112">
        <property type="entry name" value="SSF56112"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0472">Membrane</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="2" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="554"/>
            <end position="576"/>
        </location>
    </feature>
    <feature type="domain" description="ABC1" evidence="3">
        <location>
            <begin position="95"/>
            <end position="358"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="145"/>
            <end position="173"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF03109"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="ABX33774.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="586" mass="63882" checksum="865A77CA1EF27CD1" modified="2008-01-15" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="54" xmlns="http://uniprot.org/uniprot">
    <accession>A9BSG9</accession>
    <name>A9BSG9_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="3">NMT1/THI5 like domain protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Daci_1138</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="4" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX33783.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012203069.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_1138"/>
    <dbReference type="PRIDE" id="A9BSG9"/>
    <dbReference type="EnsemblBacteria" id="ABX33783">
        <property type="protein sequence ID" value="ABX33783"/>
        <property type="gene ID" value="Daci_1138"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_1138"/>
    <dbReference type="eggNOG" id="COG0715">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_028871_1_1_4"/>
    <dbReference type="OMA" id="DWKFEGP"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009228">
        <property type="term" value="P:thiamine biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027939">
        <property type="entry name" value="NMT1/THI5"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015168">
        <property type="entry name" value="SsuA/THI5"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR31528">
        <property type="entry name" value="PTHR31528"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF09084">
        <property type="entry name" value="NMT1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="1">
        <location>
            <begin position="1"/>
            <end position="22"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5002733042" evidence="1">
        <location>
            <begin position="23"/>
            <end position="345"/>
        </location>
    </feature>
    <feature type="domain" description="NMT1" evidence="2">
        <location>
            <begin position="52"/>
            <end position="259"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF09084"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ABX33783.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="345" mass="36647" checksum="E9A9B36E720F28D9" modified="2008-01-15" version="1">MQKRLFLHTVLALSASAGLATAQTQAHAATPLKFQLDWRFEGPAAFFLQPVAKGYFKDAGLDVTVDAGSGSGGVVQRVASGAYDLGFADIAALMEFQANNPDMPNKPVAVMMVYNNTPASVMALKKSGIAKTADLTGKKLGAPVFDAGRRAFPLFAKANQVGTVQWTAMDPPLRETMLVRGDVDAITGFTFTSLLNLEARGIKAADVVVMPYADFGVKLYGNAIIASPKLIKENPAAIKAFLQAFAKGAKEVIANPGAAIAYVKERDGIVNTQLETRRLQLAIDTVVNSADARAEGFGQVVPTRLSLMASQVSDVYATKTRVNPAEVWNGSFLPSAAELNILPKK</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="40" xmlns="http://uniprot.org/uniprot">
    <accession>A9BSH7</accession>
    <name>A9BSH7_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Daci_1146</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="2" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX33791.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_1146"/>
    <dbReference type="PRIDE" id="A9BSH7"/>
    <dbReference type="EnsemblBacteria" id="ABX33791">
        <property type="protein sequence ID" value="ABX33791"/>
        <property type="gene ID" value="Daci_1146"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_1146"/>
    <dbReference type="eggNOG" id="ENOG502ZBRZ">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_115756_0_0_4"/>
    <dbReference type="OMA" id="CHWFCKS"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ABX33791.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="161" mass="18405" checksum="19651CFF3303CD57" modified="2008-01-15" version="1">MGGLIEGYLRALGENDEQRRAQIWTVLDNTEANLVEQFQRFAKEMATADPQLTRVSTLPVALPYLDRLFPSSSFDLRDAMQLHARGIASVRVADSANEDERRARAFTMTAELLLMQYTCHWFCKSRAVASLRLVARHKTPFEQVLASVTDQTRRDYRQLIA</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="80" xmlns="http://uniprot.org/uniprot">
    <accession>A9BSI1</accession>
    <name>A9BSI1_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Transcriptional regulator, LysR family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Daci_1150</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="4" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the LysR transcriptional regulatory family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX33795.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012203081.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_1150"/>
    <dbReference type="PRIDE" id="A9BSI1"/>
    <dbReference type="EnsemblBacteria" id="ABX33795">
        <property type="protein sequence ID" value="ABX33795"/>
        <property type="gene ID" value="Daci_1150"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_1150"/>
    <dbReference type="eggNOG" id="COG0583">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_039613_2_1_4"/>
    <dbReference type="OMA" id="QHAQGYE"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003700">
        <property type="term" value="F:DNA-binding transcription factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005119">
        <property type="entry name" value="LysR_subst-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000847">
        <property type="entry name" value="Tscrpt_reg_HTH_LysR"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036390">
        <property type="entry name" value="WH_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00126">
        <property type="entry name" value="HTH_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03466">
        <property type="entry name" value="LysR_substrate"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46785">
        <property type="entry name" value="SSF46785"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50931">
        <property type="entry name" value="HTH_LYSR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HTH lysR-type" evidence="2">
        <location>
            <begin position="1"/>
            <end position="58"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00009437"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS50931"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ABX33795.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="300" mass="31670" checksum="8BD65D267F9C61E5" modified="2008-01-15" version="1">MQWDDARIFLAIARAGSLSGASAALGLGVATVSRRLDRLESALSMPLFSRHQSGYRLTADGQALLAPAEALEQAAQALGDAAQSQAQVAGVVRLATAENLANPLIAPSLVPLFARHPGLRVQLVSGVQTLNLHRRDADLAVRMTQPEAGHLTIRRLGTLGFGLYGSAGYVQGRAGGNGSAGTHGSDPFEGDAFIGWDDGHAHLPAARWMARALRGRPCRLETNTLSAQLAAAQAGLGLAVLPHFLARQAGLVCVEPQLGADQPIWLAMHADLAHSRRVRAVADHLIELFERRQAELEGPA</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="59" xmlns="http://uniprot.org/uniprot">
    <accession>A9BSY3</accession>
    <name>A9BSY3_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Transcriptional regulator, XRE family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_1700</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX34343.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012203628.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_1700"/>
    <dbReference type="PRIDE" id="A9BSY3"/>
    <dbReference type="EnsemblBacteria" id="ABX34343">
        <property type="protein sequence ID" value="ABX34343"/>
        <property type="gene ID" value="Daci_1700"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_1700"/>
    <dbReference type="eggNOG" id="COG1396">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_1683688_0_0_4"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd00093">
        <property type="entry name" value="HTH_XRE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.260.40">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001387">
        <property type="entry name" value="Cro/C1-type_HTH"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010982">
        <property type="entry name" value="Lambda_DNA-bd_dom_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12844">
        <property type="entry name" value="HTH_19"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00530">
        <property type="entry name" value="HTH_XRE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47413">
        <property type="entry name" value="SSF47413"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50943">
        <property type="entry name" value="HTH_CROC1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HTH cro/C1-type" evidence="1">
        <location>
            <begin position="16"/>
            <end position="69"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS50943"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX34343.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="156" mass="17317" checksum="5456EA82C1547E3C" modified="2008-01-15" version="1">MKSKISNIRDGVATRLREARELLGLKQAELATLTAISRSTQIAYEKGTTEPTTGYLQAAQRAGLDIDAVLFGPREEIDHAAPPPARGQPDWVLIQECCDTVDFFCLRFAPTCPASYRWKLIRQLYEALSAALLQEPEAPQPPSLEVLSKLWADYGK</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="78" xmlns="http://uniprot.org/uniprot">
    <accession>A9BTA1</accession>
    <name>A9BTA1_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="8">(P)ppGpp synthetase I, SpoT/RelA</fullName>
            <ecNumber evidence="8">2.7.6.5</ecNumber>
        </submittedName>
    </protein>
    <gene>
        <name evidence="8" type="ordered locus">Daci_2026</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="9" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="3">In eubacteria ppGpp (guanosine 3'-diphosphate 5'-diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance.</text>
    </comment>
    <comment type="similarity">
        <text evidence="3">Belongs to the relA/spoT family.</text>
    </comment>
    <dbReference type="EC" id="2.7.6.5" evidence="8"/>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX34666.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012203951.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_2026"/>
    <dbReference type="PRIDE" id="A9BTA1"/>
    <dbReference type="EnsemblBacteria" id="ABX34666">
        <property type="protein sequence ID" value="ABX34666"/>
        <property type="gene ID" value="Daci_2026"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_2026"/>
    <dbReference type="eggNOG" id="COG0317">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_012300_3_0_4"/>
    <dbReference type="OMA" id="DWISSPK"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008728">
        <property type="term" value="F:GTP diphosphokinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016779">
        <property type="term" value="F:nucleotidyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015969">
        <property type="term" value="P:guanosine tetraphosphate metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd00077">
        <property type="entry name" value="HDc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="CDD" id="cd05399">
        <property type="entry name" value="NT_Rel-Spo_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="CDD" id="cd01668">
        <property type="entry name" value="TGS_RSH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.10.20.30">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.460.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045865">
        <property type="entry name" value="ACT-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002912">
        <property type="entry name" value="ACT_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012675">
        <property type="entry name" value="Beta-grasp_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003607">
        <property type="entry name" value="HD/PDEase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006674">
        <property type="entry name" value="HD_domain"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043519">
        <property type="entry name" value="NT_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004811">
        <property type="entry name" value="RelA/Spo_fam"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045600">
        <property type="entry name" value="RelA/SpoT_AH_RIS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007685">
        <property type="entry name" value="RelA_SpoT"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004095">
        <property type="entry name" value="TGS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012676">
        <property type="entry name" value="TGS-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR033655">
        <property type="entry name" value="TGS_RelA/SpoT"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13291">
        <property type="entry name" value="ACT_4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF19296">
        <property type="entry name" value="DUF5913"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04607">
        <property type="entry name" value="RelA_SpoT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02824">
        <property type="entry name" value="TGS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00471">
        <property type="entry name" value="HDc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00954">
        <property type="entry name" value="RelA_SpoT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55021">
        <property type="entry name" value="SSF55021"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF81271">
        <property type="entry name" value="SSF81271"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF81301">
        <property type="entry name" value="SSF81301"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00691">
        <property type="entry name" value="spoT_relA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51671">
        <property type="entry name" value="ACT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51831">
        <property type="entry name" value="HD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51880">
        <property type="entry name" value="TGS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2" id="KW-0460">Magnesium</keyword>
    <keyword evidence="1" id="KW-0548">Nucleotidyltransferase</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="8" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="HD" evidence="6">
        <location>
            <begin position="76"/>
            <end position="175"/>
        </location>
    </feature>
    <feature type="domain" description="TGS" evidence="7">
        <location>
            <begin position="415"/>
            <end position="476"/>
        </location>
    </feature>
    <feature type="domain" description="ACT" evidence="5">
        <location>
            <begin position="680"/>
            <end position="755"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="4">
        <location>
            <begin position="1"/>
            <end position="25"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022695"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022842"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="RuleBase" id="RU003847"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="PROSITE" id="PS51671"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="PROSITE" id="PS51831"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="PROSITE" id="PS51880"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="ABX34666.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="755" mass="84020" checksum="6C55DAEA046CAC57" modified="2008-01-15" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="61" xmlns="http://uniprot.org/uniprot">
    <accession>A9BTQ5</accession>
    <name>A9BTQ5_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="4">RND efflux system, outer membrane lipoprotein, NodT family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ordered locus">Daci_2681</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="5" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="2">Cell membrane</location>
            <topology evidence="2">Lipid-anchor</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="1 2">Belongs to the outer membrane factor (OMF) (TC 1.B.17) family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX35319.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012204555.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_2681"/>
    <dbReference type="PRIDE" id="A9BTQ5"/>
    <dbReference type="EnsemblBacteria" id="ABX35319">
        <property type="protein sequence ID" value="ABX35319"/>
        <property type="gene ID" value="Daci_2681"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_2681"/>
    <dbReference type="eggNOG" id="COG1538">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_012817_13_0_4"/>
    <dbReference type="OMA" id="YNVFAGQ"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015562">
        <property type="term" value="F:efflux transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003423">
        <property type="entry name" value="OMP_efflux"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010131">
        <property type="entry name" value="RND_efflux_OM_lipoprot_NodT"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02321">
        <property type="entry name" value="OEP"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01845">
        <property type="entry name" value="outer_NodT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="2 4" id="KW-0449">Lipoprotein</keyword>
    <keyword evidence="2" id="KW-0472">Membrane</keyword>
    <keyword evidence="2" id="KW-0564">Palmitate</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="2" id="KW-1134">Transmembrane beta strand</keyword>
    <feature type="coiled-coil region" evidence="3">
        <location>
            <begin position="246"/>
            <end position="273"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00007613"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="RuleBase" id="RU362097"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="ABX35319.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="491" mass="51930" checksum="625B4F294697066E" modified="2008-01-15" version="1">MEHAKTCQRPISLERRLAATYLVAGLVTAGLAGCAAGPDFQRPTARYTATPVADRTASAPTQFGETQRLVEGLPIETQWWQSLGSSTLDGLINEAFHVSPTLASISANLRQAQELLAAQAGSTQYPQVDVALGSQRQQMSPSSQGLSGDARQFSLYNASVGAHYNLDLAGGNRRALEALAARADYRRFELNAARLALAGNMATAAITRARLAAQLEATTAILRVQDEQLRLAHERVRIGQASPDEALSLQAQAEQTRAELPALRKQLQQTEHLLAVLAGRAPGTGGIPAFTLADFTLPVEMPLVVPSELVRRRPDIQASEALLHAANADYGVAVAKLYPQINLSANLGSQALTTGTLFGGGSAVWGLVAQLTQPLFNPGLPAEKRAALAAFDAAAANYQSVVLESLRNVADTLRAVESDAQTLTALAAADMAAQASLQSVERQYRLGAASYLQLLIAQQQAQSIRINMVAAQAQRLVDSVALYQALGGGVS</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="62" xmlns="http://uniprot.org/uniprot">
    <accession>A9BTX6</accession>
    <name>A9BTX6_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Heavy metal efflux pump, CzcA family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ordered locus">Daci_2752</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="5" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX35390.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012204600.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_2752"/>
    <dbReference type="PRIDE" id="A9BTX6"/>
    <dbReference type="EnsemblBacteria" id="ABX35390">
        <property type="protein sequence ID" value="ABX35390"/>
        <property type="gene ID" value="Daci_2752"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_2752"/>
    <dbReference type="eggNOG" id="COG3696">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_002755_1_2_4"/>
    <dbReference type="OMA" id="YVQMQVN"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008324">
        <property type="term" value="F:cation transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.2090.10">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027463">
        <property type="entry name" value="AcrB_DN_DC_subdom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001036">
        <property type="entry name" value="Acrflvin-R"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004763">
        <property type="entry name" value="CzcA/CusA/SilA/NccA/HelA/CnrA"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR32063">
        <property type="entry name" value="PTHR32063"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00873">
        <property type="entry name" value="ACR_tran"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00702">
        <property type="entry name" value="ACRIFLAVINRP"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF82714">
        <property type="entry name" value="SSF82714"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00914">
        <property type="entry name" value="2A0601"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-0472">Membrane</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="3" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="3">
        <location>
            <begin position="336"/>
            <end position="355"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="3">
        <location>
            <begin position="362"/>
            <end position="382"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="3">
        <location>
            <begin position="388"/>
            <end position="411"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="3">
        <location>
            <begin position="450"/>
            <end position="473"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="3">
        <location>
            <begin position="493"/>
            <end position="517"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="3">
        <location>
            <begin position="538"/>
            <end position="563"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="3">
        <location>
            <begin position="888"/>
            <end position="907"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="3">
        <location>
            <begin position="914"/>
            <end position="934"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="3">
        <location>
            <begin position="940"/>
            <end position="964"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="3">
        <location>
            <begin position="985"/>
            <end position="1005"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="3">
        <location>
            <begin position="1017"/>
            <end position="1043"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00010942"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="ABX35390.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="1063" mass="115876" checksum="BDEB6170AFC71101" modified="2008-01-15" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="82" xmlns="http://uniprot.org/uniprot">
    <accession>A9BTY0</accession>
    <name>A9BTY0_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="14 15">Dihydroxy-acid dehydratase</fullName>
            <shortName evidence="15">DAD</shortName>
            <ecNumber evidence="14 15">4.2.1.9</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="15" type="primary">ilvD</name>
        <name evidence="16" type="ordered locus">Daci_2756</name>
    </gene>
    <organism evidence="16 17">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="16 17" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="17">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="17" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="17">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="15">Functions in the biosynthesis of branched-chain amino acids. Catalyzes the dehydration of (2R,3R)-2,3-dihydroxy-3-methylpentanoate (2,3-dihydroxy-3-methylvalerate) into 2-oxo-3-methylpentanoate (2-oxo-3-methylvalerate) and of (2R)-2,3-dihydroxy-3-methylbutanoate (2,3-dihydroxyisovalerate) into 2-oxo-3-methylbutanoate (2-oxoisovalerate), the penultimate precursor to L-isoleucine and L-valine, respectively.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="11">
            <text>(2R)-2,3-dihydroxy-3-methylbutanoate = 3-methyl-2-oxobutanoate + H2O</text>
            <dbReference type="Rhea" id="RHEA:24809"/>
            <dbReference type="ChEBI" id="CHEBI:11851"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:49072"/>
            <dbReference type="EC" id="4.2.1.9"/>
        </reaction>
        <physiologicalReaction direction="left-to-right" evidence="11">
            <dbReference type="Rhea" id="RHEA:24810"/>
        </physiologicalReaction>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="15">
            <text>(2R,3R)-2,3-dihydroxy-3-methylpentanoate = (S)-3-methyl-2-oxopentanoate + H2O</text>
            <dbReference type="Rhea" id="RHEA:27694"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:35146"/>
            <dbReference type="ChEBI" id="CHEBI:49258"/>
            <dbReference type="EC" id="4.2.1.9"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="15">
            <name>2Fe-2S cluster</name>
            <dbReference type="ChEBI" id="CHEBI:49601"/>
        </cofactor>
        <text evidence="15">Binds 1 [2Fe-2S] cluster per subunit. This cluster acts as a Lewis acid cofactor.</text>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="1 15">
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </cofactor>
    </comment>
    <comment type="pathway">
        <text evidence="13 15">Amino-acid biosynthesis; L-isoleucine biosynthesis; L-isoleucine from 2-oxobutanoate: step 3/4.</text>
    </comment>
    <comment type="pathway">
        <text evidence="12 15">Amino-acid biosynthesis; L-valine biosynthesis; L-valine from pyruvate: step 3/4.</text>
    </comment>
    <comment type="subunit">
        <text evidence="15">Homodimer.</text>
    </comment>
    <comment type="similarity">
        <text evidence="2 15">Belongs to the IlvD/Edd family.</text>
    </comment>
    <comment type="caution">
        <text evidence="15">Lacks conserved residue(s) required for the propagation of feature annotation.</text>
    </comment>
    <dbReference type="EC" id="4.2.1.9" evidence="14 15"/>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX35394.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_2756"/>
    <dbReference type="PRIDE" id="A9BTY0"/>
    <dbReference type="EnsemblBacteria" id="ABX35394">
        <property type="protein sequence ID" value="ABX35394"/>
        <property type="gene ID" value="Daci_2756"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_2756"/>
    <dbReference type="eggNOG" id="COG0129">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_014271_4_2_4"/>
    <dbReference type="OMA" id="TQGRNMA"/>
    <dbReference type="UniPathway" id="UPA00047">
        <property type="reaction ID" value="UER00057"/>
    </dbReference>
    <dbReference type="UniPathway" id="UPA00049">
        <property type="reaction ID" value="UER00061"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051537">
        <property type="term" value="F:2 iron, 2 sulfur cluster binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004160">
        <property type="term" value="F:dihydroxy-acid dehydratase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000287">
        <property type="term" value="F:magnesium ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009097">
        <property type="term" value="P:isoleucine biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009099">
        <property type="term" value="P:valine biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.50.30.80">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00012">
        <property type="entry name" value="IlvD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR042096">
        <property type="entry name" value="Dihydro-acid_dehy_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004404">
        <property type="entry name" value="DihydroxyA_deHydtase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000581">
        <property type="entry name" value="DiOHA_6PGluconate_deHydtase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020558">
        <property type="entry name" value="DiOHA_6PGluconate_deHydtase_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037237">
        <property type="entry name" value="IlvD/EDD_N"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00920">
        <property type="entry name" value="ILVD_EDD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF143975">
        <property type="entry name" value="SSF143975"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00110">
        <property type="entry name" value="ilvD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00886">
        <property type="entry name" value="ILVD_EDD_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00887">
        <property type="entry name" value="ILVD_EDD_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4 15" id="KW-0001">2Fe-2S</keyword>
    <keyword evidence="3 15" id="KW-0028">Amino-acid biosynthesis</keyword>
    <keyword evidence="10 15" id="KW-0100">Branched-chain amino acid biosynthesis</keyword>
    <keyword evidence="7 15" id="KW-0408">Iron</keyword>
    <keyword evidence="8 15" id="KW-0411">Iron-sulfur</keyword>
    <keyword evidence="9 15 16" id="KW-0456">Lyase</keyword>
    <keyword evidence="6 15" id="KW-0460">Magnesium</keyword>
    <keyword evidence="5 15" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="17" id="KW-1185">Reference proteome</keyword>
    <feature type="active site" description="Proton acceptor" evidence="15">
        <location>
            <position position="549"/>
        </location>
    </feature>
    <feature type="binding site" evidence="15">
        <location>
            <position position="108"/>
        </location>
        <ligand>
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="15">
        <location>
            <position position="150"/>
        </location>
        <ligand>
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </ligand>
    </feature>
    <feature type="binding site" description="via carbamate group" evidence="15">
        <location>
            <position position="151"/>
        </location>
        <ligand>
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="15">
        <location>
            <position position="523"/>
        </location>
        <ligand>
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </ligand>
    </feature>
    <feature type="modified residue" description="N6-carboxylysine" evidence="15">
        <location>
            <position position="151"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001946"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00006486"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022605"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022714"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022842"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023004"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00023014"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00023239"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00023304"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="ARBA" id="ARBA00029304"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="12">
        <source>
            <dbReference type="ARBA" id="ARBA00029436"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="13">
        <source>
            <dbReference type="ARBA" id="ARBA00029437"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="14">
        <source>
            <dbReference type="ARBA" id="ARBA00029490"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="15">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00012"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="16">
        <source>
            <dbReference type="EMBL" id="ABX35394.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="17">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="646" mass="69238" checksum="27713FEC9D3D54CE" modified="2008-01-15" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="40" xmlns="http://uniprot.org/uniprot">
    <accession>A9BU64</accession>
    <name>A9BU64_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Daci_3141</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="2" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX35779.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012204980.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_3141"/>
    <dbReference type="PRIDE" id="A9BU64"/>
    <dbReference type="EnsemblBacteria" id="ABX35779">
        <property type="protein sequence ID" value="ABX35779"/>
        <property type="gene ID" value="Daci_3141"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_3141"/>
    <dbReference type="eggNOG" id="ENOG5033649">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_1883573_0_0_4"/>
    <dbReference type="OMA" id="TAGDIVW"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ABX35779.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="136" mass="15037" checksum="209EA033553B1427" modified="2008-01-15" version="1">MTAPWWDEPTAGDIVWCYFPEDISPGPKPRPALILVVFDDDAPQFTVRVAYGTSQRTTTLYQGEFAILRERNPVAYTAAGLSYDTKFNLKQALDLPYTAEWFAVPPAAPHGQTPKLGVLHPSLVRAVQAAYQAVSK</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="53" xmlns="http://uniprot.org/uniprot">
    <accession>A9BUQ0</accession>
    <name>A9BUQ0_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_1514</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX34158.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_1514"/>
    <dbReference type="PRIDE" id="A9BUQ0"/>
    <dbReference type="EnsemblBacteria" id="ABX34158">
        <property type="protein sequence ID" value="ABX34158"/>
        <property type="gene ID" value="Daci_1514"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_1514"/>
    <dbReference type="eggNOG" id="ENOG502Z9MJ">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_362787_0_0_4"/>
    <dbReference type="OMA" id="YSMLCNN"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019734">
        <property type="entry name" value="TPR_repeat"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13176">
        <property type="entry name" value="TPR_7"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="200"/>
            <end position="221"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX34158.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="794" mass="88646" checksum="59B61DB25266CF85" modified="2008-01-15" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="56" xmlns="http://uniprot.org/uniprot">
    <accession>A9BUS5</accession>
    <name>A9BUS5_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Daci_1539</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="4" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX34183.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012203469.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_1539"/>
    <dbReference type="PRIDE" id="A9BUS5"/>
    <dbReference type="EnsemblBacteria" id="ABX34183">
        <property type="protein sequence ID" value="ABX34183"/>
        <property type="gene ID" value="Daci_1539"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_1539"/>
    <dbReference type="eggNOG" id="COG4804">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_046640_0_1_4"/>
    <dbReference type="OMA" id="GKMNFYC"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003676">
        <property type="term" value="F:nucleic acid binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.1350.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011856">
        <property type="entry name" value="tRNA_endonuc-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009362">
        <property type="entry name" value="YhcG_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041527">
        <property type="entry name" value="YhcG_N"/>
    </dbReference>
    <dbReference type="Pfam" id="PF17761">
        <property type="entry name" value="DUF1016_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF06250">
        <property type="entry name" value="YhcG_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="DUF1016_N" evidence="2">
        <location>
            <begin position="15"/>
            <end position="192"/>
        </location>
    </feature>
    <feature type="domain" description="YhcG_C" evidence="1">
        <location>
            <begin position="214"/>
            <end position="368"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF06250"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF17761"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ABX34183.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="382" mass="42746" checksum="8DBACAFF16207A47" modified="2008-01-15" version="1">MSTHLPADYPALLADIKQRVRHAQTHAMLAVNAELIRLYWDIGALIDQRQKREGWGAAVIPRLAKDLHNELPEEKGFSERNIKRMLAFYREYPSLAATAGSTEKVPQAVAQLAPGEKVPQAVAQSRLAPGVAADGAQVFAADVLLSLPWGHHAELIAKVKEPGARHWYMCAAIENGWSRSVLLMQIETAAHLRQGRAASNFALRLPPPDSDLVQQTLKDPYLFDFLTLESGFHERELETGLITHLEKFLLELGQGFAFVGRQYHLDLAGDDFYIDLLFYHLKLRCYVVIDLKRGDFKPEYAGKMNFYCNVVDDRLRHATDQPTIGLILCQKPNHVLAEYALRGVDKPIGVSGFELTRALPETLQSSLPSIEQIERELGGGHE</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="77" xmlns="http://uniprot.org/uniprot">
    <accession>A9BUZ9</accession>
    <name>A9BUZ9_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Transcriptional regulator, LysR family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Daci_1819</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="4" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the LysR transcriptional regulatory family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX34461.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012203746.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_1819"/>
    <dbReference type="PRIDE" id="A9BUZ9"/>
    <dbReference type="EnsemblBacteria" id="ABX34461">
        <property type="protein sequence ID" value="ABX34461"/>
        <property type="gene ID" value="Daci_1819"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_1819"/>
    <dbReference type="eggNOG" id="COG0583">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_039613_6_3_4"/>
    <dbReference type="OMA" id="FHAVMTT"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003700">
        <property type="term" value="F:DNA-binding transcription factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005119">
        <property type="entry name" value="LysR_subst-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000847">
        <property type="entry name" value="Tscrpt_reg_HTH_LysR"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036390">
        <property type="entry name" value="WH_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00126">
        <property type="entry name" value="HTH_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03466">
        <property type="entry name" value="LysR_substrate"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00039">
        <property type="entry name" value="HTHLYSR"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46785">
        <property type="entry name" value="SSF46785"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50931">
        <property type="entry name" value="HTH_LYSR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HTH lysR-type" evidence="2">
        <location>
            <begin position="15"/>
            <end position="72"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00009437"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS50931"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ABX34461.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="309" mass="33223" checksum="E2530DB23B3CAF3E" modified="2008-01-15" version="1">MQDPELPHTSPEPRISHRHLEVFRALMLSGSATAAAQMLFSSQPTVSRELARLESLLGYALFERAQGRLRPTARALSLWAEVQRSWQGLDRVVEHALALARPHQARINVLCLPALSHALLPAALARLHAEHGPVAVSVATQEAPLLQEWMAAQRYDLGLGELAEAPPGTRALALPAMDEVAVLPAGHALAARPVLEVADFAGESFVSLARDDPYRQQIDAVFEQAGVQRQLHLETHSAVAVCAMVQHGLGVAIVNPLTARACAGPQLVVRPLVFSIPFQVHALLPLHRPAVAEVQWLVDALAAEVAAVG</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-05-25" version="47" xmlns="http://uniprot.org/uniprot">
    <accession>A9BV61</accession>
    <name>A9BV61_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_2085</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX34725.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012204008.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_2085"/>
    <dbReference type="EnsemblBacteria" id="ABX34725">
        <property type="protein sequence ID" value="ABX34725"/>
        <property type="gene ID" value="Daci_2085"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_2085"/>
    <dbReference type="eggNOG" id="ENOG5032T2V">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_2012167_0_0_4"/>
    <dbReference type="OMA" id="LPCAIYA"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="16"/>
            <end position="34"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="46"/>
            <end position="69"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="89"/>
            <end position="110"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX34725.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="129" mass="14064" checksum="D54CD1BE2BECF427" modified="2008-01-15" version="1">MNALRISTTVFTEARFWSLVVFSVVLPCAIYAALLAKRSISRTTVLLFGLALVAMAGVDVYLLQSLASAARQTPSLSDNAIFVSELSTALYLLPAMIGGIGVNMTSHVLIQHLFDAERRFDSNRKNETI</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2021-06-02" version="53" xmlns="http://uniprot.org/uniprot">
    <accession>A9BV90</accession>
    <name>A9BV90_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ordered locus">Daci_2114</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="5" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Periplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the UPF0065 (bug) family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX34754.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012204037.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_2114"/>
    <dbReference type="EnsemblBacteria" id="ABX34754">
        <property type="protein sequence ID" value="ABX34754"/>
        <property type="gene ID" value="Daci_2114"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_2114"/>
    <dbReference type="eggNOG" id="COG3181">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_045683_0_0_4"/>
    <dbReference type="OMA" id="HLIGAQF"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0042597">
        <property type="term" value="C:periplasmic space"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.190.150">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005064">
        <property type="entry name" value="BUG"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR042100">
        <property type="entry name" value="Bug_dom1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR42928">
        <property type="entry name" value="PTHR42928"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03401">
        <property type="entry name" value="TctC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF017082">
        <property type="entry name" value="YflP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="3">
        <location>
            <begin position="1"/>
            <end position="26"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5002733105" evidence="3">
        <location>
            <begin position="27"/>
            <end position="325"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004418"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00006987"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="ABX34754.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="325" mass="34171" checksum="F70330AA0CD311BA" modified="2008-01-15" version="1">MNRITRVAAACALAAAIPATIPAAWAQAWPARPVNLIVPFPAGGTTDVLARALGQELSKSLGQPVVVENRPGAGATLGADHVAKAKPDGYTLLMGAVHHTIATSVYRRLGYDFQKDLAPITVVAVVPNVLVVNPQVPAKTVQELLAQARAQPGKLAYGSNGAGTGQHLIGAQFESMGGVQLLHVPYKGSGPLTTDLLGGQIAMSFDTVTPVLPHIKAGKLRALAVTTARRSVALPDVPTLDEAGLKGFDMGTWFGVLAPAATPREVLARLGADMNRIIESPQFRRKMEEIGAEPIGGSPEQMARQIRDDTDRFARLVKDAKVALD</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="69" xmlns="http://uniprot.org/uniprot">
    <accession>A9BVB2</accession>
    <name>A9BVB2_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="7">Inner-membrane translocator</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ordered locus">Daci_2136</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="8" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX34776.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012204059.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_2136"/>
    <dbReference type="PRIDE" id="A9BVB2"/>
    <dbReference type="EnsemblBacteria" id="ABX34776">
        <property type="protein sequence ID" value="ABX34776"/>
        <property type="gene ID" value="Daci_2136"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_2136"/>
    <dbReference type="eggNOG" id="COG4603">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_040769_0_0_4"/>
    <dbReference type="OMA" id="FRMNLFN"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0022857">
        <property type="term" value="F:transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001851">
        <property type="entry name" value="ABC_transp_permease"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02653">
        <property type="entry name" value="BPD_transp_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="5 6" id="KW-0472">Membrane</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 6" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="4 6" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="20"/>
            <end position="37"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="57"/>
            <end position="80"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="87"/>
            <end position="107"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="113"/>
            <end position="137"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="146"/>
            <end position="168"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="199"/>
            <end position="216"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="244"/>
            <end position="265"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="326"/>
            <end position="345"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="ABX34776.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="368" mass="39084" checksum="BF3795B3BA92E2FF" modified="2008-01-15" version="1">MFKLEQRPQASKLWTYGSPVLALAITVLIGVCLFVMLGKDPVRGLQAFFWDPVKSTYALGELAVKATPLLLIALGLAVCFRSNVWNIGAEGQFVIGAVAAGGVALLADKTTGPWIVPAILVAGMLGGMVWAGIVALLRDRFNANEILVSLMLVYVATLVLGFLVYGPWKDPMGYNFPQTKTFERVTQIPKLMQGMRTNIGLLLALAAAAMLWVFLFRTRAGFALQVGGLAPAAARYAGFSSRRALWTALLISGAAAGLAGALEVAGPLGQLTPYVPAGYGFAAIIVAFVGRLHPVGMIFSAILMSMFYIGGELAQSRLGLPKALTGVFQGLLLFTLLACDTLVAYRVRWVSRTPVVPPAAAPAVKEAR</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="61" xmlns="http://uniprot.org/uniprot">
    <accession>A9BVF2</accession>
    <name>A9BVF2_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Heat shock protein HSP20</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ordered locus">Daci_2381</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="5" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1 2">Belongs to the small heat shock protein (HSP20) family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX35019.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012204301.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_2381"/>
    <dbReference type="PRIDE" id="A9BVF2"/>
    <dbReference type="EnsemblBacteria" id="ABX35019">
        <property type="protein sequence ID" value="ABX35019"/>
        <property type="gene ID" value="Daci_2381"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_2381"/>
    <dbReference type="eggNOG" id="COG0071">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_1998893_0_0_4"/>
    <dbReference type="OMA" id="RQVQRAW"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.40.790">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002068">
        <property type="entry name" value="A-crystallin/Hsp20_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008978">
        <property type="entry name" value="HSP20-like_chaperone"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00011">
        <property type="entry name" value="HSP20"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF49764">
        <property type="entry name" value="SSF49764"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01031">
        <property type="entry name" value="SHSP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4" id="KW-0346">Stress response</keyword>
    <feature type="domain" description="SHSP" evidence="3">
        <location>
            <begin position="30"/>
            <end position="126"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00285"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="RuleBase" id="RU003616"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="PROSITE" id="PS01031"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="ABX35019.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="126" mass="13616" checksum="536D1867CF3DF93C" modified="2008-01-15" version="1">MIFSPVLRRNAFNPQAADLALQRFLQGTLGNAAPSPSSVQVQRDEKATTLQLDVPGLSREQLQLSIEGAVVRLSSVEGAPRQVQRAWELDHEIDTAASSAKLENGVLTLSLARLEPQSKATTLSIQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="68" xmlns="http://uniprot.org/uniprot">
    <accession>A9BVG1</accession>
    <name>A9BVG1_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Electron transfer flavoprotein alpha/beta-subunit</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ordered locus">Daci_2390</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="5" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the ETF beta-subunit/FixA family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX35028.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012204310.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_2390"/>
    <dbReference type="PRIDE" id="A9BVG1"/>
    <dbReference type="EnsemblBacteria" id="ABX35028">
        <property type="protein sequence ID" value="ABX35028"/>
        <property type="gene ID" value="Daci_2390"/>
    </dbReference>
    <dbReference type="GeneID" id="60686762"/>
    <dbReference type="KEGG" id="dac:Daci_2390"/>
    <dbReference type="eggNOG" id="COG2086">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_060196_0_0_4"/>
    <dbReference type="OMA" id="GIDSKMN"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009055">
        <property type="term" value="F:electron transfer activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd01714">
        <property type="entry name" value="ETF_beta"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.620">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000049">
        <property type="entry name" value="ET-Flavoprotein_bsu_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014730">
        <property type="entry name" value="ETF_a/b_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012255">
        <property type="entry name" value="ETF_b"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR033948">
        <property type="entry name" value="ETF_beta_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014729">
        <property type="entry name" value="Rossmann-like_a/b/a_fold"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR21294">
        <property type="entry name" value="PTHR21294"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01012">
        <property type="entry name" value="ETF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF000090">
        <property type="entry name" value="Beta-ETF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00893">
        <property type="entry name" value="ETF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01065">
        <property type="entry name" value="ETF_BETA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2" id="KW-0249">Electron transport</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0813">Transport</keyword>
    <feature type="domain" description="ETF" evidence="3">
        <location>
            <begin position="23"/>
            <end position="211"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00007557"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022982"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="SMART" id="SM00893"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="ABX35028.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="249" mass="26622" checksum="D9AFDC85862B1639" modified="2008-01-15" version="1">MKVLVPVKRVVDYNVKVRVKSDGTGVDIANVKMSMNPFDEIAVEEAVRLKEKGVATEVIAVSCGVAQCQETLRTAMAIGADRGILVETTEELQPLAVAKLLKALVDKEQPGLIILGKQAIDDDANQTGQMLAALADLPQATFASKVEVAGDKVNVTREVDGGLETLALSLPAVITTDLRLNEPRYVTLPNIMKAKKKQLDTVKPEELGVDVAPRLKTLKVAEPAKRGAGVKVPDVATLVSKLKNEAKVI</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="52" xmlns="http://uniprot.org/uniprot">
    <accession>A9BVJ4</accession>
    <name>A9BVJ4_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">FAD assembly factor SdhE</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="4" type="ordered locus">Daci_2423</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="5" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the SdhE FAD assembly factor family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX35061.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012204343.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_2423"/>
    <dbReference type="PRIDE" id="A9BVJ4"/>
    <dbReference type="EnsemblBacteria" id="ABX35061">
        <property type="protein sequence ID" value="ABX35061"/>
        <property type="gene ID" value="Daci_2423"/>
    </dbReference>
    <dbReference type="GeneID" id="60686793"/>
    <dbReference type="KEGG" id="dac:Daci_2423"/>
    <dbReference type="eggNOG" id="COG2938">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_103054_2_3_4"/>
    <dbReference type="OMA" id="KRARLRW"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.150.250">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005631">
        <property type="entry name" value="SDH"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036714">
        <property type="entry name" value="SDH_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03937">
        <property type="entry name" value="Sdh5"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF109910">
        <property type="entry name" value="SSF109910"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-0143">Chaperone</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00008571"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00019418"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023186"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="ABX35061.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="99" mass="11577" checksum="53E8FD7E7E5ADFE0" modified="2008-01-15" version="1">MTMTNTLLDERERDLLRWRCRRGLVENDLFIAQFFATYGDQLTRRHASGLSALMDLADNDLMDLFLRRKEPEGELDTQEIREVLELVRKRKPGSLPLVG</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="64" xmlns="http://uniprot.org/uniprot">
    <accession>A9BVN5</accession>
    <name>A9BVN5_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Tol-pal system-associated acyl-CoA thioesterase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Daci_2464</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="4" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the 4-hydroxybenzoyl-CoA thioesterase family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX35102.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012204383.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_2464"/>
    <dbReference type="PRIDE" id="A9BVN5"/>
    <dbReference type="EnsemblBacteria" id="ABX35102">
        <property type="protein sequence ID" value="ABX35102"/>
        <property type="gene ID" value="Daci_2464"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_2464"/>
    <dbReference type="eggNOG" id="COG0824">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_101141_7_1_4"/>
    <dbReference type="OMA" id="FPIRVYW"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016790">
        <property type="term" value="F:thiolester hydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029069">
        <property type="entry name" value="HotDog_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006683">
        <property type="entry name" value="Thioestr_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014166">
        <property type="entry name" value="Tol-Pal_acyl-CoA_thioesterase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006684">
        <property type="entry name" value="YbgC/YbaW"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03061">
        <property type="entry name" value="4HBT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF003230">
        <property type="entry name" value="YbgC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54637">
        <property type="entry name" value="SSF54637"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR02799">
        <property type="entry name" value="thio_ybgC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00051">
        <property type="entry name" value="TIGR00051"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="4HBT" evidence="2">
        <location>
            <begin position="17"/>
            <end position="93"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00005953"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF03061"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ABX35102.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="138" mass="15474" checksum="3C812FB18223EDE6" modified="2008-01-15" version="1">MAFEFPIRVYWEDTDAGGIVFYANYLKFFERARTEWLRALGIGQQQLREQTGGMFVVTQAQLQYLRAARLDDQLLVTAELQSSGRASLTIRQQALLASAGDGNAPPPLLCEGTIRIGWVDGSTMRPARIPNRILEQLT</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="63" xmlns="http://uniprot.org/uniprot">
    <accession>A9BVR2</accession>
    <name>A9BVR2_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="5">Probable membrane transporter protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="6" type="ordered locus">Daci_2787</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="7" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="5">Cell membrane</location>
            <topology evidence="5">Multi-pass membrane protein</topology>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="5">Belongs to the 4-toluene sulfonate uptake permease (TSUP) (TC 2.A.102) family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX35425.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012204635.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_2787"/>
    <dbReference type="PRIDE" id="A9BVR2"/>
    <dbReference type="EnsemblBacteria" id="ABX35425">
        <property type="protein sequence ID" value="ABX35425"/>
        <property type="gene ID" value="Daci_2787"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_2787"/>
    <dbReference type="eggNOG" id="COG0730">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_045498_6_0_4"/>
    <dbReference type="OMA" id="TFAATWL"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002781">
        <property type="entry name" value="TM_pro_TauE-like"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01925">
        <property type="entry name" value="TauE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="4 5" id="KW-0472">Membrane</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 5" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="3 5" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="6"/>
            <end position="36"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="48"/>
            <end position="66"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="86"/>
            <end position="104"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="109"/>
            <end position="126"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="146"/>
            <end position="167"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="179"/>
            <end position="204"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="216"/>
            <end position="236"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="248"/>
            <end position="265"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="RuleBase" id="RU363041"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="ABX35425.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="272" mass="28050" checksum="59861DE5752ED644" modified="2008-01-15" version="1">MPDLLFLELALLGLCSGFLAGLLGVGGGMVLVPFLTYFLDKRGVGPDLSVKMAIATAMATIVFTSISSLRAHHGRGAVRWDIVRSLAPGIITGGLLASLGVFALLRGKYLALFFGVFIGYMALRMLRSNSQPTATRALPGPLGLYGAGTGLGFISGLVGAGGAFISVPFMMRCSVPMHMAVGTSAALGFPIAVVNAAGLIFTGAGDAGRPEYSLGYLWLPALLALACCSVLTAPLGARAAHRLPVGQLKRIFATLLFGLAAYMLWKGLSAGS</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="31" xmlns="http://uniprot.org/uniprot">
    <accession>A9BW17</accession>
    <name>A9BW17_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Daci_3195</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="2" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX35833.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_3195"/>
    <dbReference type="PRIDE" id="A9BW17"/>
    <dbReference type="EnsemblBacteria" id="ABX35833">
        <property type="protein sequence ID" value="ABX35833"/>
        <property type="gene ID" value="Daci_3195"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_3195"/>
    <dbReference type="HOGENOM" id="CLU_1783705_0_0_4"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ABX35833.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="145" mass="16777" checksum="1CA65BC7E0BB3317" modified="2008-01-15" version="1">MTAVLERLRLASAVIAGSAEAASIVPVRTFQISRGPLDLFVWPDEDSLDDWGKLEVRKLRREVEERYTRYRSFDICSLRDFLKNMRIPLTHQTQDSFERLHRLHCVEFSGVPASIYERIPHWFNHVISCGQITHPLIETGSVIDV</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-01-19" version="43" xmlns="http://uniprot.org/uniprot">
    <accession>A9BW38</accession>
    <name>A9BW38_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Daci_3216</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="4" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX35854.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012205054.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_3216"/>
    <dbReference type="EnsemblBacteria" id="ABX35854">
        <property type="protein sequence ID" value="ABX35854"/>
        <property type="gene ID" value="Daci_3216"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_3216"/>
    <dbReference type="HOGENOM" id="CLU_1394339_0_0_4"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="2">
        <location>
            <begin position="1"/>
            <end position="19"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5002735883" evidence="2">
        <location>
            <begin position="20"/>
            <end position="195"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="175"/>
            <end position="195"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="179"/>
            <end position="195"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ABX35854.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="195" mass="21040" checksum="01505BF61BBAEE9F" modified="2008-01-15" version="1">MKKVLTAAVLAVCSLAAQADDFSYKGVKLGETMEQFQAALPLYECKGDACTYTRDSCAPNSMGGTTDAFVQRLAECREGTSFGGGLVTYGRAKFIDGKFASLYLIFPMAHARVVGDALEEKYGKPTTVDTKPVKNRAGAEFDNWVKTWTKGDADLVARLRASQIDEGSVSIRSAAAKAEEQARQQQQTKAGAKDF</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="39" xmlns="http://uniprot.org/uniprot">
    <accession>A9BW52</accession>
    <name>A9BW52_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Daci_3230</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="2" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX35868.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012205068.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_3230"/>
    <dbReference type="PRIDE" id="A9BW52"/>
    <dbReference type="EnsemblBacteria" id="ABX35868">
        <property type="protein sequence ID" value="ABX35868"/>
        <property type="gene ID" value="Daci_3230"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_3230"/>
    <dbReference type="HOGENOM" id="CLU_1765026_0_0_4"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ABX35868.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="147" mass="16510" checksum="2EB27763145B08CA" modified="2008-01-15" version="1">MTEERYLCATGATNLQDMPHRIGQVDLVKANGMSASNMASHFMRLVSKPTKADMTRVYAALLYVAHKRKFVEPAAAITAAIDWMLDPSCKVCSGTGEIERKGRMHKCPKCKGEKLRREPASRDAQYLIDHVSDCRRALSGRVRKLMR</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="55" xmlns="http://uniprot.org/uniprot">
    <accession>A9BW59</accession>
    <name>A9BW59_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">DUF4055 domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_3237</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX35875.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012205075.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_3237"/>
    <dbReference type="PRIDE" id="A9BW59"/>
    <dbReference type="EnsemblBacteria" id="ABX35875">
        <property type="protein sequence ID" value="ABX35875"/>
        <property type="gene ID" value="Daci_3237"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_3237"/>
    <dbReference type="eggNOG" id="ENOG502Z8D8">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_041779_0_1_4"/>
    <dbReference type="OMA" id="RVFAEPT"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025129">
        <property type="entry name" value="DUF4055"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13264">
        <property type="entry name" value="DUF4055"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="DUF4055" evidence="1">
        <location>
            <begin position="254"/>
            <end position="388"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF13264"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX35875.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="465" mass="50523" checksum="BB9B66C4E1E28ECE" modified="2008-01-15" version="1">MEAGFSMALNVQDRDPKMSAMEAEWPLLTALLGGTRTMRAASTTFLPRQPKEDLDDYNYRLAVATLFPAFERTCTVMAGKPFAKEVTLSKDTPDVILDLCNNIDGEGRSLHAFASDVFDHSAIKYGFGGILVDFTRTQGRARTRAEEKAIGARPYCVHIKAEQILGWMVGEVGGKPGLTMLRIAETKEVPDGDYGTKLLKRVRVLRPGSFEVWEESANGSYALVSEESGATTLSFIPFVPVYGRRAAFMQGMPPLLNLAYLNVKHWQNESDQDDSARFARKRLLVFSGINNKDEIVMAASQAVNLPAGGSADVLQGSAESVTVGRSELNALEEQMIQTGAELLVAQPGQRTATEASNDAEANKSALQSIVENYEDALDLVLDYMAAWLGIDRTAKVTLFKDFAAQSLTEAGAQMIVSLYQAGLLSKETAIKEMQRRGVLSPDLDAEAEFDRIASEGPALGTIGGD</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="75" xmlns="http://uniprot.org/uniprot">
    <accession>A9BW86</accession>
    <name>A9BW86_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="5">Aminopeptidase N</fullName>
            <ecNumber evidence="4">3.4.11.2</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="15" type="ordered locus">Daci_3264</name>
    </gene>
    <organism evidence="15 16">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="15 16" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="16">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="16" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="16">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>Release of an N-terminal amino acid, Xaa-|-Yaa- from a peptide, amide or arylamide. Xaa is preferably Ala, but may be most amino acids including Pro (slow action). When a terminal hydrophobic residue is followed by a prolyl residue, the two may be released as an intact Xaa-Pro dipeptide.</text>
            <dbReference type="EC" id="3.4.11.2"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="2">
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </cofactor>
    </comment>
    <comment type="similarity">
        <text evidence="3">Belongs to the peptidase M1 family.</text>
    </comment>
    <dbReference type="EC" id="3.4.11.2" evidence="4"/>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX35902.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012205102.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_3264"/>
    <dbReference type="MEROPS" id="M01.005"/>
    <dbReference type="PRIDE" id="A9BW86"/>
    <dbReference type="EnsemblBacteria" id="ABX35902">
        <property type="protein sequence ID" value="ABX35902"/>
        <property type="gene ID" value="Daci_3264"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_3264"/>
    <dbReference type="eggNOG" id="COG0308">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_007993_2_0_4"/>
    <dbReference type="OMA" id="FKRWYSQ"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004177">
        <property type="term" value="F:aminopeptidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008237">
        <property type="term" value="F:metallopeptidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008270">
        <property type="term" value="F:zinc ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006508">
        <property type="term" value="P:proteolysis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.390.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.25.50.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.40.1730">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.40.1840">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045357">
        <property type="entry name" value="Aminopeptidase_N-like_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR042097">
        <property type="entry name" value="Aminopeptidase_N-like_N_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038438">
        <property type="entry name" value="PepN_Ig-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001930">
        <property type="entry name" value="Peptidase_M1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014782">
        <property type="entry name" value="Peptidase_M1_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012779">
        <property type="entry name" value="Peptidase_M1_pepN"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR024601">
        <property type="entry name" value="Peptidase_M1_pepN_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037144">
        <property type="entry name" value="Peptidase_M1_pepN_C_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035414">
        <property type="entry name" value="Peptidase_M1_pepN_Ig-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027268">
        <property type="entry name" value="Peptidase_M4/M1_CTD_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46322">
        <property type="entry name" value="PTHR46322"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF11940">
        <property type="entry name" value="DUF3458"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF17432">
        <property type="entry name" value="DUF3458_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01433">
        <property type="entry name" value="Peptidase_M1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF17900">
        <property type="entry name" value="Peptidase_M1_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00756">
        <property type="entry name" value="ALADIPTASE"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF63737">
        <property type="entry name" value="SSF63737"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR02414">
        <property type="entry name" value="pepN_proteo"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="15" id="KW-0031">Aminopeptidase</keyword>
    <keyword evidence="8" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="7" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="10" id="KW-0482">Metalloprotease</keyword>
    <keyword evidence="6" id="KW-0645">Protease</keyword>
    <keyword evidence="16" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="9" id="KW-0862">Zinc</keyword>
    <feature type="domain" description="Peptidase_M1_N" evidence="14">
        <location>
            <begin position="32"/>
            <end position="195"/>
        </location>
    </feature>
    <feature type="domain" description="Peptidase_M1" evidence="11">
        <location>
            <begin position="235"/>
            <end position="453"/>
        </location>
    </feature>
    <feature type="domain" description="DUF3458" evidence="12">
        <location>
            <begin position="462"/>
            <end position="567"/>
        </location>
    </feature>
    <feature type="domain" description="DUF3458_C" evidence="13">
        <location>
            <begin position="571"/>
            <end position="907"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00000098"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00001947"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00010136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00012564"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00015611"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022670"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00022833"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00023049"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="11">
        <source>
            <dbReference type="Pfam" id="PF01433"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="12">
        <source>
            <dbReference type="Pfam" id="PF11940"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="13">
        <source>
            <dbReference type="Pfam" id="PF17432"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="14">
        <source>
            <dbReference type="Pfam" id="PF17900"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="15">
        <source>
            <dbReference type="EMBL" id="ABX35902.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="16">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="908" mass="100306" checksum="AEDFAD8B089307F5" modified="2008-01-15" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="43" xmlns="http://uniprot.org/uniprot">
    <accession>A9BWG6</accession>
    <name>A9BWG6_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_3552</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX36186.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="PRIDE" id="A9BWG6"/>
    <dbReference type="EnsemblBacteria" id="ABX36186">
        <property type="protein sequence ID" value="ABX36186"/>
        <property type="gene ID" value="Daci_3552"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_3552"/>
    <dbReference type="eggNOG" id="ENOG50330UZ">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_1852507_0_0_4"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR024447">
        <property type="entry name" value="YXWGXW_rpt"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12779">
        <property type="entry name" value="WXXGXW"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="1">
        <location>
            <begin position="1"/>
            <end position="19"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5002733124" evidence="1">
        <location>
            <begin position="20"/>
            <end position="132"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX36186.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="132" mass="15106" checksum="36C6F643814EADC7" modified="2008-01-15" version="1">MTFKRIAAVGLASVGLASALALTGCVVAPERHPRPAPAVHVQERVMPEVIVEERGAPPAPGWHWVNGYWRWERDQWVWQRGHWVANTVPPMPPVIVEVRPAPPSPVHYWVPGHWVWRADINNWFWVKGQWHG</sequence>
</entry>
<entry dataset="Swiss-Prot" created="2009-04-14" modified="2022-08-03" version="83" xmlns="http://uniprot.org/uniprot">
    <accession>A9BWI2</accession>
    <name>KDSB_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">3-deoxy-manno-octulosonate cytidylyltransferase</fullName>
            <ecNumber evidence="1">2.7.7.38</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="1">CMP-2-keto-3-deoxyoctulosonic acid synthase</fullName>
            <shortName evidence="1">CKS</shortName>
            <shortName evidence="1">CMP-KDO synthase</shortName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="1" type="primary">kdsB</name>
        <name type="ordered locus">Daci_3568</name>
    </gene>
    <organism>
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference key="1">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain>DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="1">Activates KDO (a required 8-carbon sugar) for incorporation into bacterial lipopolysaccharide in Gram-negative bacteria.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>3-deoxy-alpha-D-manno-oct-2-ulosonate + CTP = CMP-3-deoxy-beta-D-manno-octulosonate + diphosphate</text>
            <dbReference type="Rhea" id="RHEA:23448"/>
            <dbReference type="ChEBI" id="CHEBI:33019"/>
            <dbReference type="ChEBI" id="CHEBI:37563"/>
            <dbReference type="ChEBI" id="CHEBI:85986"/>
            <dbReference type="ChEBI" id="CHEBI:85987"/>
            <dbReference type="EC" id="2.7.7.38"/>
        </reaction>
    </comment>
    <comment type="pathway">
        <text evidence="1">Nucleotide-sugar biosynthesis; CMP-3-deoxy-D-manno-octulosonate biosynthesis; CMP-3-deoxy-D-manno-octulosonate from 3-deoxy-D-manno-octulosonate and CTP: step 1/1.</text>
    </comment>
    <comment type="pathway">
        <text evidence="1">Bacterial outer membrane biogenesis; lipopolysaccharide biosynthesis.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="1">Belongs to the KdsB family.</text>
    </comment>
    <dbReference type="EC" id="2.7.7.38" evidence="1"/>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX36202.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012205402.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A9BWI2"/>
    <dbReference type="SMR" id="A9BWI2"/>
    <dbReference type="STRING" id="398578.Daci_3568"/>
    <dbReference type="PRIDE" id="A9BWI2"/>
    <dbReference type="EnsemblBacteria" id="ABX36202">
        <property type="protein sequence ID" value="ABX36202"/>
        <property type="gene ID" value="Daci_3568"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_3568"/>
    <dbReference type="eggNOG" id="COG1212">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_065038_1_0_4"/>
    <dbReference type="OMA" id="FMATCAK"/>
    <dbReference type="UniPathway" id="UPA00030"/>
    <dbReference type="UniPathway" id="UPA00358">
        <property type="reaction ID" value="UER00476"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008690">
        <property type="term" value="F:3-deoxy-manno-octulosonate cytidylyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0033468">
        <property type="term" value="P:CMP-keto-3-deoxy-D-manno-octulosonic acid biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009103">
        <property type="term" value="P:lipopolysaccharide biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd02517">
        <property type="entry name" value="CMP-KDO-Synthetase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.550.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00057">
        <property type="entry name" value="KdsB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003329">
        <property type="entry name" value="Cytidylyl_trans"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004528">
        <property type="entry name" value="KdsB"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029044">
        <property type="entry name" value="Nucleotide-diphossugar_trans"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02348">
        <property type="entry name" value="CTP_transf_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53448">
        <property type="entry name" value="SSF53448"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00466">
        <property type="entry name" value="kdsB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword id="KW-0963">Cytoplasm</keyword>
    <keyword id="KW-0448">Lipopolysaccharide biosynthesis</keyword>
    <keyword id="KW-0548">Nucleotidyltransferase</keyword>
    <keyword id="KW-1185">Reference proteome</keyword>
    <keyword id="KW-0808">Transferase</keyword>
    <feature type="chain" id="PRO_0000370058" description="3-deoxy-manno-octulosonate cytidylyltransferase">
        <location>
            <begin position="1"/>
            <end position="265"/>
        </location>
    </feature>
    <evidence type="ECO:0000255" key="1">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00057"/>
        </source>
    </evidence>
    <sequence length="265" mass="27613" checksum="06E4DA2471FBC279" modified="2008-01-15" version="1">MPTAPFTVLIPARLASSRLPGKPLADIAGLPMVVRVAQRAGLSGATRCVVAADDESIVAACAAHGVAAVLTRSDHASGSDRLAEACELLGLDGDDIVVNVQGDEPLIAPDLIDAVAALLPQQPSASMGTAAHAIDSLADFTNPNVVKVVCDAQGMAHYFSRAPIPFAREHAGQAWWEAASAAASAAPGHPGFAPLRHIGIYSYRAGFLRSFPQLSPAPTEVLEALEQLRALWHGHRIAVHLTPHAPGPGVDTPEDLERVRARLSA</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="51" xmlns="http://uniprot.org/uniprot">
    <accession>A9BWN9</accession>
    <name>A9BWN9_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Hpt domain protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Daci_3935</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="4" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX36566.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="PRIDE" id="A9BWN9"/>
    <dbReference type="EnsemblBacteria" id="ABX36566">
        <property type="protein sequence ID" value="ABX36566"/>
        <property type="gene ID" value="Daci_3935"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_3935"/>
    <dbReference type="HOGENOM" id="CLU_1270577_0_0_4"/>
    <dbReference type="OMA" id="ATTACHH"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000160">
        <property type="term" value="P:phosphorelay signal transduction system"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.120.160">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036641">
        <property type="entry name" value="HPT_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008207">
        <property type="entry name" value="Sig_transdc_His_kin_Hpt_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01627">
        <property type="entry name" value="Hpt"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47226">
        <property type="entry name" value="SSF47226"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HPt" evidence="2">
        <location>
            <begin position="185"/>
            <end position="265"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="46"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="8"/>
            <end position="46"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF01627"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ABX36566.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="271" mass="29811" checksum="EE45702872799409" modified="2008-01-15" version="1">MPAPDTRSPMKKQTSTLDSAPTPYRSEKISTAAESITATEEPPSSALSFSGEQVLFISSSDELHAHLLPHLKSWGLATTACHHPTAIRQDRLQKFQVVVLCGPKTSWNPKDENRLVAGAASIIECEADHPLQPKVINARIIEVSWRSLQGLFDALQLAVQPRPANSGRISSTDDVAHFQQIPAPIRTAFLESARSSLAIIKSSKNRKDVQRELHNLSGSLRFFDLTELSIRCAGLENGINHDGLMHHAHSLLALASQLDQLLEEIRISNDR</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="58" xmlns="http://uniprot.org/uniprot">
    <accession>A9BXN2</accession>
    <name>A9BXN2_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Porin, gram-negative type</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ordered locus">Daci_5680</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="6" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX38308.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_5680"/>
    <dbReference type="PRIDE" id="A9BXN2"/>
    <dbReference type="EnsemblBacteria" id="ABX38308">
        <property type="protein sequence ID" value="ABX38308"/>
        <property type="gene ID" value="Daci_5680"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_5680"/>
    <dbReference type="eggNOG" id="COG3203">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_1413120_0_0_4"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046930">
        <property type="term" value="C:pore complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015288">
        <property type="term" value="F:porin activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006811">
        <property type="term" value="P:ion transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd00342">
        <property type="entry name" value="gram_neg_porins"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.160.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR033900">
        <property type="entry name" value="Gram_neg_porin_domain"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023614">
        <property type="entry name" value="Porin_dom_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13609">
        <property type="entry name" value="Porin_4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0406">Ion transport</keyword>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-0626">Porin</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1134">Transmembrane beta strand</keyword>
    <keyword evidence="3" id="KW-0813">Transport</keyword>
    <feature type="domain" description="Porin_4" evidence="4">
        <location>
            <begin position="13"/>
            <end position="167"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022452"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023065"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023114"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="Pfam" id="PF13609"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="ABX38308.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="192" mass="20086" checksum="DAC88EA013D5C7F5" modified="2008-01-15" version="1">MSPGGAIKTAGGYLRYSQSGISAGAGYLGTTLPAGTKVDAYTLGGSYRVGPWYVNLGYGLNKRKDAFPAATAGGGFDQAILNSFWTGSSNGGFVAGDANKRQMYKMGFGYQITPQINVGAHYYHAKQSGSGTGNFNGKADFLVAVVDYAFSKRTDAYVALDHTKTSGGSGVMLDANGATKRTGFTVGLRHRF</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="87" xmlns="http://uniprot.org/uniprot">
    <accession>A9BXR0</accession>
    <name>A9BXR0_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="12">ABC transporter related</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="12" type="ordered locus">Daci_5708</name>
    </gene>
    <organism evidence="12 13">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="12 13" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="13">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="13" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="13">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX38336.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012207505.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_5708"/>
    <dbReference type="PRIDE" id="A9BXR0"/>
    <dbReference type="EnsemblBacteria" id="ABX38336">
        <property type="protein sequence ID" value="ABX38336"/>
        <property type="gene ID" value="Daci_5708"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_5708"/>
    <dbReference type="eggNOG" id="COG1132">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_000604_84_2_4"/>
    <dbReference type="OMA" id="FNTLQMG"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0140359">
        <property type="term" value="F:ABC-type transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.1560.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003593">
        <property type="entry name" value="AAA+_ATPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011527">
        <property type="entry name" value="ABC1_TM_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036640">
        <property type="entry name" value="ABC1_TM_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003439">
        <property type="entry name" value="ABC_transporter-like_ATP-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017871">
        <property type="entry name" value="ABC_transporter-like_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR039421">
        <property type="entry name" value="Type_1_exporter"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR24221">
        <property type="entry name" value="PTHR24221"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00664">
        <property type="entry name" value="ABC_membrane"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00005">
        <property type="entry name" value="ABC_tran"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00382">
        <property type="entry name" value="AAA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF90123">
        <property type="entry name" value="SSF90123"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50929">
        <property type="entry name" value="ABC_TM1F"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00211">
        <property type="entry name" value="ABC_TRANSPORTER_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50893">
        <property type="entry name" value="ABC_TRANSPORTER_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4 8" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="1" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="7 9" id="KW-0472">Membrane</keyword>
    <keyword evidence="3 8" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="13" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="5" id="KW-1278">Translocase</keyword>
    <keyword evidence="2 9" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="6 9" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="9">
        <location>
            <begin position="185"/>
            <end position="207"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="9">
        <location>
            <begin position="227"/>
            <end position="248"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="9">
        <location>
            <begin position="299"/>
            <end position="324"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="9">
        <location>
            <begin position="330"/>
            <end position="349"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="9">
        <location>
            <begin position="412"/>
            <end position="433"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="9">
        <location>
            <begin position="439"/>
            <end position="459"/>
        </location>
    </feature>
    <feature type="domain" description="ABC transmembrane type-1" evidence="11">
        <location>
            <begin position="186"/>
            <end position="474"/>
        </location>
    </feature>
    <feature type="domain" description="ABC transporter" evidence="10">
        <location>
            <begin position="508"/>
            <end position="741"/>
        </location>
    </feature>
    <feature type="binding site" evidence="8">
        <location>
            <begin position="540"/>
            <end position="547"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022967"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00434"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="10">
        <source>
            <dbReference type="PROSITE" id="PS50893"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="11">
        <source>
            <dbReference type="PROSITE" id="PS50929"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="EMBL" id="ABX38336.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="13">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="764" mass="84720" checksum="39E40458BCEDF098" modified="2008-01-15" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="79" xmlns="http://uniprot.org/uniprot">
    <accession>A9BXT7</accession>
    <name>A9BXT7_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Transcriptional regulator, GntR family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ordered locus">Daci_5735</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="6" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX38363.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012207532.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_5735"/>
    <dbReference type="PRIDE" id="A9BXT7"/>
    <dbReference type="EnsemblBacteria" id="ABX38363">
        <property type="protein sequence ID" value="ABX38363"/>
        <property type="gene ID" value="Daci_5735"/>
    </dbReference>
    <dbReference type="GeneID" id="60690098"/>
    <dbReference type="KEGG" id="dac:Daci_5735"/>
    <dbReference type="eggNOG" id="COG1802">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_017584_5_5_4"/>
    <dbReference type="OMA" id="AFHVVDD"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003700">
        <property type="term" value="F:DNA-binding transcription factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd07377">
        <property type="entry name" value="WHTH_GntR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.120.530">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011711">
        <property type="entry name" value="GntR_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008920">
        <property type="entry name" value="TF_FadR/GntR_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000524">
        <property type="entry name" value="Tscrpt_reg_HTH_GntR"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036390">
        <property type="entry name" value="WH_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07729">
        <property type="entry name" value="FCD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00392">
        <property type="entry name" value="GntR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00035">
        <property type="entry name" value="HTHGNTR"/>
    </dbReference>
    <dbReference type="SMART" id="SM00895">
        <property type="entry name" value="FCD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00345">
        <property type="entry name" value="HTH_GNTR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46785">
        <property type="entry name" value="SSF46785"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48008">
        <property type="entry name" value="SSF48008"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50949">
        <property type="entry name" value="HTH_GNTR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0804">Transcription</keyword>
    <keyword evidence="1" id="KW-0805">Transcription regulation</keyword>
    <feature type="domain" description="HTH gntR-type" evidence="4">
        <location>
            <begin position="8"/>
            <end position="75"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023015"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023163"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="PROSITE" id="PS50949"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="ABX38363.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="224" mass="25153" checksum="A1567CC4C42171E7" modified="2008-01-15" version="1">MTRSTDILNLTDRVTEQLRSKLIDGAWEPGQKLSEASLSESLQISRNTLREAFRLLTKEGLLVHEPNKGVSVAAPSIASIIDIYRVRRMVECQALAQAYPMHPARSLMREAVEAAQRHREAQDWSGVGTANMSFHKAVVQLADSERLDTMFEHLLAELRLAFGLLRDPHFLHAPYVDMNARILQQFEDGKPAEAAAALNDYLVHSERLILAAYARRLAEKGIKV</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="49" xmlns="http://uniprot.org/uniprot">
    <accession>A9BXZ5</accession>
    <name>A9BXZ5_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Daci_1286</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="4" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX33930.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012203216.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_1286"/>
    <dbReference type="PRIDE" id="A9BXZ5"/>
    <dbReference type="EnsemblBacteria" id="ABX33930">
        <property type="protein sequence ID" value="ABX33930"/>
        <property type="gene ID" value="Daci_1286"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_1286"/>
    <dbReference type="eggNOG" id="COG1571">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_039030_1_0_4"/>
    <dbReference type="OMA" id="WFAPNGL"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="2" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="370"/>
            <end position="388"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="20"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="1"/>
            <end position="17"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ABX33930.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="390" mass="43728" checksum="47A8388C47F5920A" modified="2008-01-15" version="1">MSAPSPRSSSTPASGSGSWEAAAAAPAMVRKHPCPECGANLEWNAQAQALKCPYCGTTVPWSEETREELGRDVVEQDLAEALRNPKSGRGWGTEDRYEVQCQNCRAISVFVNRTVAQRCDFCGSPSIVAHEDQGDAITPQSILPFKISDGQIRDRIRQWYGSRWFAPNRLKSAALTDTLHGVYLPYWTFDAHASADWQAEAGFYYYTTESYRDSNGNVQTRQVRHVRWEPAAGSLAHFFDDELVPGTVGVHANLLRQVEPFPTTTDLKPYTPEFVRGWTVERYQIDLGKAAQVNVQDMDEQLRALCARQVPGDTYRNLQMQREYQGRTFKHILVPVWLVGYTYGSKTFQIIANGYTGQIAGERPYSALKITLAVLATIMVLALLWVMFGK</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-05-25" version="68" xmlns="http://uniprot.org/uniprot">
    <accession>A9BY11</accession>
    <name>A9BY11_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">Type II secretion system protein H</fullName>
        </recommendedName>
        <alternativeName>
            <fullName evidence="11">General secretion pathway protein H</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="14" type="ordered locus">Daci_1302</name>
    </gene>
    <organism evidence="14 15">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="14 15" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="15">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="15" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="15">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="2">Cell inner membrane</location>
            <topology evidence="2">Single-pass membrane protein</topology>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Single-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="10">Belongs to the GSP H family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX33946.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012203232.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_1302"/>
    <dbReference type="EnsemblBacteria" id="ABX33946">
        <property type="protein sequence ID" value="ABX33946"/>
        <property type="gene ID" value="Daci_1302"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_1302"/>
    <dbReference type="eggNOG" id="COG4970">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_123291_1_0_4"/>
    <dbReference type="OMA" id="RRWRIDI"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015627">
        <property type="term" value="C:type II protein secretion system complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015628">
        <property type="term" value="P:protein secretion by the type II secretion system"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012902">
        <property type="entry name" value="N_methyl_site"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045584">
        <property type="entry name" value="Pilin-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR022346">
        <property type="entry name" value="T2SS_GspH"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002416">
        <property type="entry name" value="T2SS_protein-GspH"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12019">
        <property type="entry name" value="GspH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07963">
        <property type="entry name" value="N_methyl"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54523">
        <property type="entry name" value="SSF54523"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR02532">
        <property type="entry name" value="IV_pilin_GFxxxE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01708">
        <property type="entry name" value="typeII_sec_gspH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00409">
        <property type="entry name" value="PROKAR_NTER_METHYL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="6" id="KW-0997">Cell inner membrane</keyword>
    <keyword evidence="4" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="9 12" id="KW-0472">Membrane</keyword>
    <keyword evidence="5" id="KW-0488">Methylation</keyword>
    <keyword evidence="15" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="7 12" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="8 12" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="12">
        <location>
            <begin position="6"/>
            <end position="26"/>
        </location>
    </feature>
    <feature type="domain" description="GspH" evidence="13">
        <location>
            <begin position="43"/>
            <end position="138"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004167"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00004377"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00021549"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022481"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022519"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00025772"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="ARBA" id="ARBA00030775"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="12">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="13">
        <source>
            <dbReference type="Pfam" id="PF12019"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="14">
        <source>
            <dbReference type="EMBL" id="ABX33946.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="15">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="148" mass="15437" checksum="4CE49FAADF683023" modified="2008-01-15" version="1">MKRAQGFTLIELLVVFAILGAIIGIVPPAMGKLRDAVDYRQTVQDVTALLRKARQQATLQGMPVAFAINTNSRQYGIAGQATAKLPDSLTVQLTTAAGMALADGSQTIVFLPEGGATGGSISIARAQSGGGVRLRVDWLSGQVTKEAL</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="55" xmlns="http://uniprot.org/uniprot">
    <accession>A9BY63</accession>
    <name>A9BY63_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Isochorismatase hydrolase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_1558</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX34202.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012203488.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_1558"/>
    <dbReference type="PRIDE" id="A9BY63"/>
    <dbReference type="EnsemblBacteria" id="ABX34202">
        <property type="protein sequence ID" value="ABX34202"/>
        <property type="gene ID" value="Daci_1558"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_1558"/>
    <dbReference type="eggNOG" id="COG1335">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_066901_1_0_4"/>
    <dbReference type="OMA" id="DAHDYAM"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016787">
        <property type="term" value="F:hydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.850">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000868">
        <property type="entry name" value="Isochorismatase-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036380">
        <property type="entry name" value="Isochorismatase-like_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00857">
        <property type="entry name" value="Isochorismatase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52499">
        <property type="entry name" value="SSF52499"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Isochorismatase" evidence="1">
        <location>
            <begin position="16"/>
            <end position="172"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF00857"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX34202.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="232" mass="25752" checksum="AF1046D8396466D1" modified="2008-01-15" version="1">MTDRKYLEVLTPANSQIIFIDQQPQMAFGVQSIDRQVLKNNVVGLAKAAKAFGIPATITTVETGSFSGHTYPELLAVFPEHPLLERSSMNSWDDQNVRDALARNAAQGRKKIVVSGLWTEVCNTTFALSALHDTDYEIYMVADASGGTSLDAHNYAMDRMVQAGVVPVTWQQVLLEWQRDWARRETYDAVMDIVREHSGAYGMGVDYAYTMVHKAAERVQHGETMGPNPAKA</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="62" xmlns="http://uniprot.org/uniprot">
    <accession>A9BY64</accession>
    <name>A9BY64_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Pirin domain protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ordered locus">Daci_1559</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="6" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1 2">Belongs to the pirin family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX34203.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012203489.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_1559"/>
    <dbReference type="PRIDE" id="A9BY64"/>
    <dbReference type="EnsemblBacteria" id="ABX34203">
        <property type="protein sequence ID" value="ABX34203"/>
        <property type="gene ID" value="Daci_1559"/>
    </dbReference>
    <dbReference type="GeneID" id="60686097"/>
    <dbReference type="KEGG" id="dac:Daci_1559"/>
    <dbReference type="eggNOG" id="COG1741">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_064194_2_2_4"/>
    <dbReference type="OMA" id="NLRVWND"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.120.10">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012093">
        <property type="entry name" value="Pirin"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003829">
        <property type="entry name" value="Pirin_N_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041602">
        <property type="entry name" value="Quercetinase_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014710">
        <property type="entry name" value="RmlC-like_jellyroll"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011051">
        <property type="entry name" value="RmlC_Cupin_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43212">
        <property type="entry name" value="PTHR43212"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02678">
        <property type="entry name" value="Pirin"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF17954">
        <property type="entry name" value="Pirin_C_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF006232">
        <property type="entry name" value="Pirin"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51182">
        <property type="entry name" value="SSF51182"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Pirin" evidence="3">
        <location>
            <begin position="10"/>
            <end position="118"/>
        </location>
    </feature>
    <feature type="domain" description="Pirin_C_2" evidence="4">
        <location>
            <begin position="153"/>
            <end position="231"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00008416"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="RuleBase" id="RU003457"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF02678"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="Pfam" id="PF17954"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="ABX34203.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="234" mass="25365" checksum="1741A4DA6E853C54" modified="2008-01-15" version="1">MIERRPFQALGGANHGWLDAKHHFSFAGYHDPARMGWGALRVWNDDTIAAGTGFPPHAHANMEIITYVREGAITHQDSLGNKGRTEAGDVQVMSAGTGIRHSEYNQEKDTTRIFQIWIMPDERGQQPPSWGAKPFPKGERSGSFVALASGLPGDEDALPIRTAARVLGATLKAGESTEYRIGRDRLGYLVPASGSVQIDGVTLQERDGAAISDVDSFRVTALADTELVLVDTAR</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="45" xmlns="http://uniprot.org/uniprot">
    <accession>A9BYC6</accession>
    <name>A9BYC6_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Transcriptional regulator CII, putative</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_1621</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX34265.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012203550.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_1621"/>
    <dbReference type="PRIDE" id="A9BYC6"/>
    <dbReference type="EnsemblBacteria" id="ABX34265">
        <property type="protein sequence ID" value="ABX34265"/>
        <property type="gene ID" value="Daci_1621"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_1621"/>
    <dbReference type="eggNOG" id="ENOG5033D8H">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_1648412_0_0_4"/>
    <dbReference type="OMA" id="IATMCHE"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="coiled-coil region" evidence="1">
        <location>
            <begin position="126"/>
            <end position="153"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX34265.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="161" mass="17022" checksum="829D09BEE3C72B1F" modified="2008-01-15" version="1">MSAVDCVSRAAHHYPGARAALIARLFPGKSDDSVRKELSGIASHKLGLADGIAIAAMCCELKTPHCYDLASYVAQECGGRFELIDGASPALASPVDKVSKLVLETSHITSAVIEAMQDGVISDNELAQIEREIAQAEEVLRKLRQAARAVNAAGKPKREAA</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="75" xmlns="http://uniprot.org/uniprot">
    <accession>A9BYH1</accession>
    <name>A9BYH1_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Response regulator receiver protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ordered locus">Daci_1874</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="5" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX34514.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012203799.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_1874"/>
    <dbReference type="PRIDE" id="A9BYH1"/>
    <dbReference type="EnsemblBacteria" id="ABX34514">
        <property type="protein sequence ID" value="ABX34514"/>
        <property type="gene ID" value="Daci_1874"/>
    </dbReference>
    <dbReference type="GeneID" id="60686304"/>
    <dbReference type="KEGG" id="dac:Daci_1874"/>
    <dbReference type="eggNOG" id="COG0789">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="eggNOG" id="COG3706">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_092045_1_0_4"/>
    <dbReference type="OMA" id="ICKVSQQ"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000160">
        <property type="term" value="P:phosphorelay signal transduction system"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011006">
        <property type="entry name" value="CheY-like_superfamily"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009061">
        <property type="entry name" value="DNA-bd_dom_put_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041657">
        <property type="entry name" value="HTH_17"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001789">
        <property type="entry name" value="Sig_transdc_resp-reg_receiver"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010093">
        <property type="entry name" value="SinI_DNA-bd"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12728">
        <property type="entry name" value="HTH_17"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00072">
        <property type="entry name" value="Response_reg"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00448">
        <property type="entry name" value="REC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46955">
        <property type="entry name" value="SSF46955"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52172">
        <property type="entry name" value="SSF52172"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01764">
        <property type="entry name" value="excise"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50110">
        <property type="entry name" value="RESPONSE_REGULATORY"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0597">Phosphoprotein</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Response regulatory" evidence="3">
        <location>
            <begin position="89"/>
            <end position="207"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="57"/>
            <end position="83"/>
        </location>
    </feature>
    <feature type="modified residue" description="4-aspartylphosphate" evidence="1">
        <location>
            <position position="140"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00169"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="PROSITE" id="PS50110"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="ABX34514.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="212" mass="22803" checksum="0BEBFA9C94B2CBEA" modified="2008-01-15" version="1">MSENSTPPGQIPHYTTAEVAKLLGMAVRSVQLMVDRGDLEAWKTPGGHRRITRASVERWRGRQGDAATTSGAPAAAPAPAPAQAGTGPRVLLIEDSVHFQNLVRLLVQRHFPDVQLHVAHDGITGMALYGQIQPDVLLVDILLPDIDGAALITTLRTHEQFARCKLLVVTSLDAAEREAYAFALGGARVIHKPQLVQELPEALGELLGRQAA</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="45" xmlns="http://uniprot.org/uniprot">
    <accession>A9BZ05</accession>
    <name>A9BZ05_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Daci_2260</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="2" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX34900.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012204183.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="PRIDE" id="A9BZ05"/>
    <dbReference type="EnsemblBacteria" id="ABX34900">
        <property type="protein sequence ID" value="ABX34900"/>
        <property type="gene ID" value="Daci_2260"/>
    </dbReference>
    <dbReference type="GeneID" id="60686654"/>
    <dbReference type="KEGG" id="dac:Daci_2260"/>
    <dbReference type="eggNOG" id="ENOG50331RD">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_2034245_0_0_4"/>
    <dbReference type="OMA" id="WDYDLQA"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ABX34900.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="121" mass="13213" checksum="99C4C473E161FB67" modified="2008-01-15" version="1">MTLDYLDFDYSEDDEGTGCWDAMASVPATRVPALAAEVEQLLAWAHRRFKGRRGPIEEGGDWDYELQAQDDGGQPLAWRFDAATARLQSVAAGDGRTTVNLSISGSAAFGEALRQAFELQD</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="60" xmlns="http://uniprot.org/uniprot">
    <accession>A9BZ59</accession>
    <name>A9BZ59_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="3">YD repeat protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Daci_2521</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="4" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX35159.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_2521"/>
    <dbReference type="PRIDE" id="A9BZ59"/>
    <dbReference type="EnsemblBacteria" id="ABX35159">
        <property type="protein sequence ID" value="ABX35159"/>
        <property type="gene ID" value="Daci_2521"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_2521"/>
    <dbReference type="eggNOG" id="COG3209">
        <property type="taxonomic scope" value="Bacteria"/>
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    <dbReference type="HOGENOM" id="CLU_001218_0_1_4"/>
    <dbReference type="OMA" id="CEDIANS"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045351">
        <property type="entry name" value="DUF6531"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001826">
        <property type="entry name" value="RHS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR022385">
        <property type="entry name" value="Rhs_assc_core"/>
    </dbReference>
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        <property type="entry name" value="RHS_repeat"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006530">
        <property type="entry name" value="YD"/>
    </dbReference>
    <dbReference type="Pfam" id="PF20148">
        <property type="entry name" value="DUF6531"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03527">
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        <property type="match status" value="1"/>
    </dbReference>
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        <property type="match status" value="5"/>
    </dbReference>
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        <property type="entry name" value="RHSPROTEIN"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR03696">
        <property type="entry name" value="Rhs_assc_core"/>
        <property type="match status" value="1"/>
    </dbReference>
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        <property type="entry name" value="YD_repeat_2x"/>
        <property type="match status" value="6"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="DUF6531" evidence="2">
        <location>
            <begin position="45"/>
            <end position="126"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="511"/>
            <end position="538"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="966"/>
            <end position="1000"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1476"/>
            <end position="1509"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="967"/>
            <end position="982"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF20148"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ABX35159.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="1509" mass="166175" checksum="E2669015929290D1" modified="2008-01-15" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-01-19" version="39" xmlns="http://uniprot.org/uniprot">
    <accession>A9BZD8</accession>
    <name>A9BZD8_DELAS</name>
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        <recommendedName>
            <fullName evidence="1">Lipoyl-binding domain-containing protein</fullName>
        </recommendedName>
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        <name evidence="2" type="ordered locus">Daci_2900</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
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            <authorList>
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                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
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            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
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            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX35538.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_2900"/>
    <dbReference type="EnsemblBacteria" id="ABX35538">
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    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_2900"/>
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        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_3232582_0_0_4"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000089">
        <property type="entry name" value="Biotin_lipoyl"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011053">
        <property type="entry name" value="Single_hybrid_motif"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00364">
        <property type="entry name" value="Biotin_lipoyl"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51230">
        <property type="entry name" value="SSF51230"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Lipoyl-binding" evidence="1">
        <location>
            <begin position="1"/>
            <end position="35"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF00364"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX35538.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="43" mass="4301" checksum="7D8AF0DE4E0067D1" modified="2008-01-15" version="1">MKMEFQVVASQAGRIAAVHCKAGKAVAAGDALMVLEASQPAGS</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="66" xmlns="http://uniprot.org/uniprot">
    <accession>A9BZK0</accession>
    <name>A9BZK0_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Band 7 protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Daci_2962</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
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    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
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                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
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            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="4" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
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                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the band 7/mec-2 family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX35600.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
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        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_2962"/>
    <dbReference type="PRIDE" id="A9BZK0"/>
    <dbReference type="EnsemblBacteria" id="ABX35600">
        <property type="protein sequence ID" value="ABX35600"/>
        <property type="gene ID" value="Daci_2962"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_2962"/>
    <dbReference type="eggNOG" id="COG0330">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_024949_2_2_4"/>
    <dbReference type="OMA" id="TQIRAEM"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016020">
        <property type="term" value="C:membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.479.30">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001107">
        <property type="entry name" value="Band_7"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036013">
        <property type="entry name" value="Band_7/SPFH_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR032435">
        <property type="entry name" value="Band_7_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001972">
        <property type="entry name" value="Stomatin_HflK_HflKC_fam"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01145">
        <property type="entry name" value="Band_7"/>
        <property type="match status" value="1"/>
    </dbReference>
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        <property type="entry name" value="Band_7_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00721">
        <property type="entry name" value="STOMATIN"/>
    </dbReference>
    <dbReference type="SMART" id="SM00244">
        <property type="entry name" value="PHB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF117892">
        <property type="entry name" value="SSF117892"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="PHB" evidence="2">
        <location>
            <begin position="17"/>
            <end position="175"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00008164"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="SMART" id="SM00244"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ABX35600.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="305" mass="33356" checksum="105B61FDC6B0566D" modified="2008-01-15" version="1">MEIAIVIAVIAAIFIARSVKVVPQQHAWVKERLGKYAGTLTPGLNFLVPFVDRVAYKHSLKEIPLDVPSQVCITRDNTQLQVDGILYFQVTDPMRASYGSSNYIMAVTQLAQTSLRSVIGKLELDKTFEERDMINAQVVSAIDEAALNWGVKVLRYEIKDLTPPAEILRSMQAQITAEREKRALIAASEGRRQEQINIATGEREAFIARSEGEKQAVINKAQGEAESIKAVADATAQAIERVANAIRQPGGEQAVQLKVAEKAVEAYSQVASDATTTLIVPSNMTEVSSLITSAMKMIQTGQRTS</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="82" xmlns="http://uniprot.org/uniprot">
    <accession>A9BZQ4</accession>
    <name>A9BZQ4_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Transcriptional regulator, LysR family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Daci_3324</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="4" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the LysR transcriptional regulatory family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX35962.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012205162.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_3324"/>
    <dbReference type="PRIDE" id="A9BZQ4"/>
    <dbReference type="EnsemblBacteria" id="ABX35962">
        <property type="protein sequence ID" value="ABX35962"/>
        <property type="gene ID" value="Daci_3324"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_3324"/>
    <dbReference type="eggNOG" id="COG0583">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_039613_16_3_4"/>
    <dbReference type="OMA" id="TCIYALR"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003700">
        <property type="term" value="F:DNA-binding transcription factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005119">
        <property type="entry name" value="LysR_subst-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000847">
        <property type="entry name" value="Tscrpt_reg_HTH_LysR"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036390">
        <property type="entry name" value="WH_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00126">
        <property type="entry name" value="HTH_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03466">
        <property type="entry name" value="LysR_substrate"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46785">
        <property type="entry name" value="SSF46785"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50931">
        <property type="entry name" value="HTH_LYSR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HTH lysR-type" evidence="2">
        <location>
            <begin position="1"/>
            <end position="59"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00009437"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS50931"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ABX35962.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="299" mass="32805" checksum="D004012C037DC032" modified="2008-01-15" version="1">MDRFQSMTAFLAVVDTGGFASAARRLKVSPSVVTRAVSDLEERLGVRLLTRTTRFVRVTEAGTAYADSCRRILAELEEADEHAASAHAAPRGRLTLTAPVNFGRMHVLPVVHDYLGRFPEVDVNCWFVDRVVSLVDEGVDVAVRIGDLPDSSLQAIRVGSVRQVLCASPAYLASHGVPQRPEELAQHTTITASGLTSTPEWRFLEGDKALAVRLQPRLMSMTNEAAADCALAGQGITRLPLYQIAKPVQDGTLRLVLEPFERPPLPIHVVHREGRHAAHRVRAFIDMAVDALRVAALRW</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="48" xmlns="http://uniprot.org/uniprot">
    <accession>A9C026</accession>
    <name>A9C026_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_3656</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX36288.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012205484.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_3656"/>
    <dbReference type="PRIDE" id="A9C026"/>
    <dbReference type="EnsemblBacteria" id="ABX36288">
        <property type="protein sequence ID" value="ABX36288"/>
        <property type="gene ID" value="Daci_3656"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_3656"/>
    <dbReference type="eggNOG" id="COG3182">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_043268_0_0_4"/>
    <dbReference type="OMA" id="GHRWLGI"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005625">
        <property type="entry name" value="PepSY-ass_TM"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR34219">
        <property type="entry name" value="PTHR34219"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03929">
        <property type="entry name" value="PepSY_TM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="15"/>
            <end position="39"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="190"/>
            <end position="207"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="219"/>
            <end position="238"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="259"/>
            <end position="280"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="466"/>
            <end position="487"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX36288.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="510" mass="56440" checksum="E4EFF3D413B3B649" modified="2008-01-15" version="1">MRLHLKRWLFLLHRWLGIAVCLFFALWFVSGMVMIYVGYPKLTEAERLRHLPPLDGNAALLAPAEALRAAGIDGPLKDLRLHAGSAGRASYLATPEGRRQPVAIDAASGQVLGATSEAQALASARAFAGDGTGLYYLGTVDEDAFSHSRALDIHRPLHRVQLDDAQGTLLYISGRTAEVVRDATRTERGWNYLGAWLHWLYMFRGNAFDGAWADIVNVLSLVGIAVATTGTVVGVMRWRFRQPYRSGRRTPYPGLAMRWHHVAGLLFALTTLAWIFSGLMSMNPWRLFDTGTPPLHMARWQQGPLRLTGGDATPQSLIAAAGGPVRELRWLRTAGRTEVLAQPAAGTPLVLDSASAAPVTHSREALLDRAAVLIDAPVLRSEWLTAHDLYWYERAEHTMMGGHDKPLPVMRVVYGDAAASWVHIDPHTGQVLGRLDGTQRLKRWLFAMLHSWDWLPLLQRRPLWDALLLAFSLGGLLMSATGVLIGVRRLRRKRSHRAQPSACLEAQPHG</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="48" xmlns="http://uniprot.org/uniprot">
    <accession>A9C053</accession>
    <name>A9C053_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Daci_3683</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="2" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX36315.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012205511.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="PRIDE" id="A9C053"/>
    <dbReference type="EnsemblBacteria" id="ABX36315">
        <property type="protein sequence ID" value="ABX36315"/>
        <property type="gene ID" value="Daci_3683"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_3683"/>
    <dbReference type="eggNOG" id="COG0790">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_144677_0_0_4"/>
    <dbReference type="OMA" id="ADRCEAR"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.25.40.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011990">
        <property type="entry name" value="TPR-like_helical_dom_sf"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ABX36315.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="152" mass="16336" checksum="71217D619255DA51" modified="2008-01-15" version="1">MRFEFRPIATTIATPIATLARHAQHGLFIAAALSGALAQAAPLPFDTATTSEQRFQLALEAQTAGDYASMLALLRQAARDGEPQAQETLAWILLAGPTLYGTAVKADRCEAVHWLRQAVAKGNQTAKSQLDFLNRLRNAPSGKMACASEWEG</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="79" xmlns="http://uniprot.org/uniprot">
    <accession>A9C074</accession>
    <name>A9C074_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Transcriptional regulator, LuxR family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Daci_4009</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="4" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX36640.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012205834.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_4009"/>
    <dbReference type="PRIDE" id="A9C074"/>
    <dbReference type="EnsemblBacteria" id="ABX36640">
        <property type="protein sequence ID" value="ABX36640"/>
        <property type="gene ID" value="Daci_4009"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_4009"/>
    <dbReference type="eggNOG" id="COG2771">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_077414_1_0_4"/>
    <dbReference type="OMA" id="CTIFAYE"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006355">
        <property type="term" value="P:regulation of transcription, DNA-templated"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016032">
        <property type="entry name" value="Sig_transdc_resp-reg_C-effctor"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000792">
        <property type="entry name" value="Tscrpt_reg_LuxR_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR039420">
        <property type="entry name" value="WalR-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR48111">
        <property type="entry name" value="PTHR48111"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00196">
        <property type="entry name" value="GerE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00421">
        <property type="entry name" value="HTH_LUXR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46894">
        <property type="entry name" value="SSF46894"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HTH luxR-type" evidence="2">
        <location>
            <begin position="224"/>
            <end position="281"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="SMART" id="SM00421"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ABX36640.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="288" mass="31832" checksum="D8EB4AEF1FB970EE" modified="2008-01-15" version="1">MSTDTGRSHWLLAPASASDASLPVPLGDVTALLEQVGRSSASSDEVAGQLLHLLGRHVPLAQCTIFSFQGRSRPRIVGFGDRARTGALPMISQDYSERFYPLDGAQRVMQAELARQQRDPQAPARVWLHRQRPCDVSHPEYRHVCYGLPRLVERLSLLTLQPGARWLAVNLYRGEEHGCLDAQSIARIEAFVPLVMQAMRLHYAGQALQDDLAGLVLARLAGRFAHLTQRDLDVVRCVIEGLDAERLAQRLGITVSSARTYLKRVCAKLGVQGQRELFALLMAPEALS</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="94" xmlns="http://uniprot.org/uniprot">
    <accession>A9C083</accession>
    <name>A9C083_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="7">Pyridine nucleotide-disulphide oxidoreductase dimerisation region</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ordered locus">Daci_4018</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="8" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="3">
            <name>FAD</name>
            <dbReference type="ChEBI" id="CHEBI:57692"/>
        </cofactor>
        <text evidence="3">Binds 1 FAD per subunit.</text>
    </comment>
    <comment type="similarity">
        <text evidence="1">Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX36649.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012205843.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_4018"/>
    <dbReference type="PRIDE" id="A9C083"/>
    <dbReference type="EnsemblBacteria" id="ABX36649">
        <property type="protein sequence ID" value="ABX36649"/>
        <property type="gene ID" value="Daci_4018"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_4018"/>
    <dbReference type="eggNOG" id="COG1249">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_016755_0_3_4"/>
    <dbReference type="OMA" id="VEHIWAM"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0050660">
        <property type="term" value="F:flavin adenine dinucleotide binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016491">
        <property type="term" value="F:oxidoreductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0045454">
        <property type="term" value="P:cell redox homeostasis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.390.30">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.50.50.60">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036188">
        <property type="entry name" value="FAD/NAD-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023753">
        <property type="entry name" value="FAD/NAD-binding_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016156">
        <property type="entry name" value="FAD/NAD-linked_Rdtase_dimer_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001100">
        <property type="entry name" value="Pyr_nuc-diS_OxRdtase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004099">
        <property type="entry name" value="Pyr_nucl-diS_OxRdtase_dimer"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07992">
        <property type="entry name" value="Pyr_redox_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02852">
        <property type="entry name" value="Pyr_redox_dim"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF000350">
        <property type="entry name" value="Mercury_reductase_MerA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51905">
        <property type="entry name" value="SSF51905"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55424">
        <property type="entry name" value="SSF55424"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-0274">FAD</keyword>
    <keyword evidence="3" id="KW-0285">Flavoprotein</keyword>
    <keyword evidence="3" id="KW-0520">NAD</keyword>
    <keyword evidence="3" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Pyr_redox_2" evidence="6">
        <location>
            <begin position="10"/>
            <end position="322"/>
        </location>
    </feature>
    <feature type="domain" description="Pyr_redox_dim" evidence="5">
        <location>
            <begin position="345"/>
            <end position="448"/>
        </location>
    </feature>
    <feature type="active site" description="Proton acceptor" evidence="2">
        <location>
            <position position="438"/>
        </location>
    </feature>
    <feature type="binding site" evidence="3">
        <location>
            <position position="55"/>
        </location>
        <ligand>
            <name>FAD</name>
            <dbReference type="ChEBI" id="CHEBI:57692"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="3">
        <location>
            <begin position="180"/>
            <end position="187"/>
        </location>
        <ligand>
            <name>NAD(+)</name>
            <dbReference type="ChEBI" id="CHEBI:57540"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="3">
        <location>
            <position position="265"/>
        </location>
        <ligand>
            <name>NAD(+)</name>
            <dbReference type="ChEBI" id="CHEBI:57540"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="3">
        <location>
            <position position="307"/>
        </location>
        <ligand>
            <name>FAD</name>
            <dbReference type="ChEBI" id="CHEBI:57692"/>
        </ligand>
    </feature>
    <feature type="disulfide bond" description="Redox-active" evidence="4">
        <location>
            <begin position="46"/>
            <end position="51"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00007532"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="PIRSR" id="PIRSR000350-2"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="PIRSR" id="PIRSR000350-3"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="PIRSR" id="PIRSR000350-4"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="Pfam" id="PF02852"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="Pfam" id="PF07992"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="ABX36649.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="474" mass="50765" checksum="EBB7767577DE8200" modified="2008-01-15" version="1">MKNPPTTALDVIIVGAGSAGLSALREVRKHTEHFAIVNDGPWGTTCARVGCMPSKLLIEAANAFHARHHFDAFGIRGASGLQLDLPAVLRRVRKLRDEFVASTIKATEGLGWRAIDGRARLLAANRIEVNGKVLAARKLILAPGSSPVVPEEWKRFGKRILTTDTLFERKTLGPRVAVVGLGPLGVEIAQALARLGLDVTALGRGPKLAGLSDPNVTDALRHLLEKEMVVITDHEVQLSKGPDSSIVVRAGDTRIVVDHVVAAMGRRPQLEGLGLETLGLELDEHGQPPVSRETLQVGELPLFLAGDANGDRPLLHEAVDEGHIAGTNAMAENVACFERRTPLSIVFSSPQAAVVGQPMKALLGQDFVVGRVDFAHQGRARAAQRNAGLLHVYADPASGLLLGAEMCAPGGEHLAHLLALAVQQQLTVHELLRAPFYHPVLEEGLRTALRDAVRQLREPPPSDLGNCDPLPMDD</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="63" xmlns="http://uniprot.org/uniprot">
    <accession>A9C0S6</accession>
    <name>A9C0S6_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">NADAR domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="4" type="ordered locus">Daci_5761</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="5" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="2">
            <text>2,5-diamino-6-hydroxy-4-(5-phosphoribosylamino)-pyrimidine + H2O = 2,5,6-triamino-4-hydroxypyrimidine + D-ribose 5-phosphate</text>
            <dbReference type="Rhea" id="RHEA:23436"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:58614"/>
            <dbReference type="ChEBI" id="CHEBI:78346"/>
            <dbReference type="ChEBI" id="CHEBI:137796"/>
        </reaction>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>5-amino-6-(5-phospho-D-ribosylamino)uracil + H2O = 5,6-diaminouracil + D-ribose 5-phosphate</text>
            <dbReference type="Rhea" id="RHEA:55020"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:46252"/>
            <dbReference type="ChEBI" id="CHEBI:58453"/>
            <dbReference type="ChEBI" id="CHEBI:78346"/>
        </reaction>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX38389.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012207558.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_5761"/>
    <dbReference type="PRIDE" id="A9C0S6"/>
    <dbReference type="EnsemblBacteria" id="ABX38389">
        <property type="protein sequence ID" value="ABX38389"/>
        <property type="gene ID" value="Daci_5761"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_5761"/>
    <dbReference type="eggNOG" id="COG3236">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_084247_1_0_4"/>
    <dbReference type="OMA" id="WMMAAKA"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="CDD" id="cd15457">
        <property type="entry name" value="NADAR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.357.40">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012816">
        <property type="entry name" value="NADAR"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037238">
        <property type="entry name" value="YbiA-like_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08719">
        <property type="entry name" value="NADAR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF143990">
        <property type="entry name" value="SSF143990"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR02464">
        <property type="entry name" value="ribofla_fusion"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="NADAR" evidence="3">
        <location>
            <begin position="41"/>
            <end position="186"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00000022"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00000751"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF08719"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="ABX38389.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="193" mass="21084" checksum="B2A56E50D2C384DA" modified="2008-01-15" version="1">MTTTDHIASLQDLQHAMAQGLTPRFLPFWGHQPAADGSIGKTCMSQWFEAGFEVEGQHYPTAEHFMMAGKARLFGDEAAHAAIVRCRTPGEAKKLGRGIQGFDEAAWVAARMDIVVRANEAKFSQNPALARYLLNTGDRVLVEASPVDAIWGIGLAADDVRATDPARWQGLNLLGFALMQVRARLRSTAPDRP</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="70" xmlns="http://uniprot.org/uniprot">
    <accession>A9C0Z1</accession>
    <name>A9C0Z1_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Alkylhydroperoxidase like protein, AhpD family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_5826</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX38454.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_5826"/>
    <dbReference type="PRIDE" id="A9C0Z1"/>
    <dbReference type="EnsemblBacteria" id="ABX38454">
        <property type="protein sequence ID" value="ABX38454"/>
        <property type="gene ID" value="Daci_5826"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_5826"/>
    <dbReference type="eggNOG" id="COG2128">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_082760_5_1_4"/>
    <dbReference type="OMA" id="HTGIAKM"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004601">
        <property type="term" value="F:peroxidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051920">
        <property type="term" value="F:peroxiredoxin activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.1290.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029032">
        <property type="entry name" value="AhpD-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004675">
        <property type="entry name" value="AhpD_core"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003779">
        <property type="entry name" value="CMD-like"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02627">
        <property type="entry name" value="CMD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF69118">
        <property type="entry name" value="SSF69118"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00778">
        <property type="entry name" value="ahpD_dom"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="2" id="KW-0575">Peroxidase</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="CMD" evidence="1">
        <location>
            <begin position="60"/>
            <end position="140"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF02627"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX38454.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="213" mass="22595" checksum="4128714DC8F6A7DD" modified="2008-01-15" version="1">MARGGAADHEGIPSFLQNTMARLTLHTPQTAPEASRPFVERALAGNGFLPNLIAILANSPQALETYVTVGQINARAQLTLAEREVVQITAARIHGCDFCVAGHTKLAFKQAGLTQAEVVALQDGRDTGQPRLDAVRRFAEAVIATRGAVADEALAAFHAAGLSEQQALEVVLGISLATLCNFANSLAQSPVNPQLQPYLPEQFRQPQENAHAG</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="60" xmlns="http://uniprot.org/uniprot">
    <accession>A9C108</accession>
    <name>A9C108_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Precorrin-6A synthase (Deacetylating)</fullName>
            <ecNumber evidence="5">2.1.1.152</ecNumber>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ordered locus">Daci_5843</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="6" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EC" id="2.1.1.152" evidence="5"/>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX38471.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012207640.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_5843"/>
    <dbReference type="PRIDE" id="A9C108"/>
    <dbReference type="EnsemblBacteria" id="ABX38471">
        <property type="protein sequence ID" value="ABX38471"/>
        <property type="gene ID" value="Daci_5843"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_5843"/>
    <dbReference type="eggNOG" id="COG2243">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_098653_0_0_4"/>
    <dbReference type="OMA" id="ARHGWIM"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043819">
        <property type="term" value="F:precorrin-6A synthase (deacetylating) activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009236">
        <property type="term" value="P:cobalamin biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0032259">
        <property type="term" value="P:methylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd11643">
        <property type="entry name" value="Precorrin-6A-synthase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.950.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.1010.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000878">
        <property type="entry name" value="4pyrrol_Mease"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035996">
        <property type="entry name" value="4pyrrol_Methylase_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014777">
        <property type="entry name" value="4pyrrole_Mease_sub1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014776">
        <property type="entry name" value="4pyrrole_Mease_sub2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012797">
        <property type="entry name" value="CobF"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00590">
        <property type="entry name" value="TP_methylase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF036525">
        <property type="entry name" value="CobF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53790">
        <property type="entry name" value="SSF53790"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR02434">
        <property type="entry name" value="CobF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1 5" id="KW-0489">Methyltransferase</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0949">S-adenosyl-L-methionine</keyword>
    <keyword evidence="2 5" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="TP_methylase" evidence="4">
        <location>
            <begin position="10"/>
            <end position="237"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022603"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022691"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="Pfam" id="PF00590"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="ABX38471.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="265" mass="28660" checksum="315E317E7460E4E6" modified="2008-01-15" version="1">MSAALPPVALSLIGIGTGNPDHLTREAQAAMQAADLILLPHKGEDKAELAALRRDLCDAVLTAPGPRIEGFDMPVRRSVGDDYLAQVDEWHAAITRCWQAAIARSLDEGLQPRTPGQPLQVALLVWGDPALYDSTLRIAARMQPAPHRVRVVAGISSMQVLCAAHAIALNGIGQPFVVTTGRQLREQGWPPGVDTAVVMLDGQCSFTELPSHGLHIWWGAYLGMDRQMLDSGPLAEAAPRIAQARAAARERHGWIMDIYLLRRGS</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2021-06-02" version="45" xmlns="http://uniprot.org/uniprot">
    <accession>A9C1E4</accession>
    <name>A9C1E4_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Daci_5979</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="4" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX38607.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012207776.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_5979"/>
    <dbReference type="EnsemblBacteria" id="ABX38607">
        <property type="protein sequence ID" value="ABX38607"/>
        <property type="gene ID" value="Daci_5979"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_5979"/>
    <dbReference type="eggNOG" id="ENOG5030HAA">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_784418_0_0_4"/>
    <dbReference type="OMA" id="VYVKDQT"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="2">
        <location>
            <begin position="1"/>
            <end position="20"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5002733264" evidence="2">
        <location>
            <begin position="21"/>
            <end position="350"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="30"/>
            <end position="62"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="45"/>
            <end position="62"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ABX38607.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="350" mass="36505" checksum="AED3AE588199EF3B" modified="2008-01-15" version="1">MKMVQLTRRSAALMLLGTLAACGGGGGGGLGEPGGGDPGNGGNPGNPGTPGNPGGGTTTPVTGQYRMETAAENFDAALSAMNTLGAQGYAFTYSLASGGTTFPVPIGDFYVTDTAHTGTRLDYRMVADVAGVSALVAQLNAQGAQGYLYKSGMAFPSSTQDLRNLYVRSSSAAATYSYETRPAVGALDTSGFTQQLAEMSGRGFRYTGPLISGDEMFNLYVKDSKAPAFEYAVFALAAPFGMANGTALKQRLDEMGAKGHLLRGALVLRGNTEGVQLYEKSGDQQGAIEYRLESVSNNASLAQRLEQFNRNAAEGFFAFGDVVTDDGQFHSISVRNVKRMVHPLAGASFP</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="69" xmlns="http://uniprot.org/uniprot">
    <accession>A9C1F1</accession>
    <name>A9C1F1_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Short-chain dehydrogenase/reductase SDR</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Daci_5986</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="2" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX38614.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012207783.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_5986"/>
    <dbReference type="PRIDE" id="A9C1F1"/>
    <dbReference type="EnsemblBacteria" id="ABX38614">
        <property type="protein sequence ID" value="ABX38614"/>
        <property type="gene ID" value="Daci_5986"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_5986"/>
    <dbReference type="eggNOG" id="COG1028">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_010194_9_1_4"/>
    <dbReference type="OMA" id="GIGLEYC"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036291">
        <property type="entry name" value="NAD(P)-bd_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002347">
        <property type="entry name" value="SDR_fam"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00081">
        <property type="entry name" value="GDHRDH"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51735">
        <property type="entry name" value="SSF51735"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ABX38614.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="220" mass="23139" checksum="57735BEB1BF70403" modified="2008-01-15" version="1">MAVTLVLGASRGLGFALVQAYAAQGRSVVATVRSEADRERVEATGAKVLLVDVADPASVSGLAWQLDGEKIELALYVAGVWDAHSSATPPTREQFDRVMHTNVLGAMQVLPQVAPLVEAAGGVFGLFSSQMSLLADAESDAWLYRVSKAALNMVVASAQPQWPGATVVALDPGWVQTDMGGAAATFTVEQSVQGLVRTLAGVTPADRGRMLRHDGQRIAW</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="69" xmlns="http://uniprot.org/uniprot">
    <accession>A9C1J3</accession>
    <name>A9C1J3_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Amidase, hydantoinase/carbamoylase family</fullName>
            <ecNumber evidence="3">3.5.1.87</ecNumber>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Daci_6028</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="4" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="2">
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </cofactor>
        <text evidence="2">Binds 2 Zn(2+) ions per subunit.</text>
    </comment>
    <comment type="similarity">
        <text evidence="1">Belongs to the peptidase M20 family.</text>
    </comment>
    <dbReference type="EC" id="3.5.1.87" evidence="3"/>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX38656.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012207825.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_6028"/>
    <dbReference type="PRIDE" id="A9C1J3"/>
    <dbReference type="EnsemblBacteria" id="ABX38656">
        <property type="protein sequence ID" value="ABX38656"/>
        <property type="gene ID" value="Daci_6028"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_6028"/>
    <dbReference type="eggNOG" id="COG0624">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_024588_2_1_4"/>
    <dbReference type="OMA" id="IWPHGRW"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016813">
        <property type="term" value="F:hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amidines"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0050538">
        <property type="term" value="F:N-carbamoyl-L-amino-acid hydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010158">
        <property type="entry name" value="Amidase_Cbmase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036264">
        <property type="entry name" value="Bact_exopeptidase_dim_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002933">
        <property type="entry name" value="Peptidase_M20"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR32494">
        <property type="entry name" value="PTHR32494"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01546">
        <property type="entry name" value="Peptidase_M20"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF001235">
        <property type="entry name" value="Amidase_carbamoylase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55031">
        <property type="entry name" value="SSF55031"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01879">
        <property type="entry name" value="hydantase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="2" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0862">Zinc</keyword>
    <feature type="binding site" evidence="2">
        <location>
            <position position="95"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
            <label>1</label>
        </ligand>
    </feature>
    <feature type="binding site" evidence="2">
        <location>
            <position position="106"/>
        </location>
    </feature>
    <feature type="binding site" evidence="2">
        <location>
            <position position="141"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
            <label>2</label>
        </ligand>
    </feature>
    <feature type="binding site" evidence="2">
        <location>
            <position position="201"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
            <label>1</label>
        </ligand>
    </feature>
    <feature type="binding site" evidence="2">
        <location>
            <position position="393"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
            <label>2</label>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00006153"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="PIRSR" id="PIRSR001235-1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ABX38656.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="431" mass="45058" checksum="92C26977D9D63C3B" modified="2008-01-15" version="1">MDLSTPLAATAVAAGLRTDGARLWQSLMDLARIGATPKGGVCRLALTDLDRQGRDLFVQWAREAGCSIRVDAIGNIFARRAGLDDALPPVMTGSHIDTQPTGGKFDGNYGVLAGLEVLRTLNDGGVRTRAPVEVAVWTNEEGSRFVPVMMGSGVFVNAFTLEHALAQRDAQGVSVDEALRAIGYAGPAGPAPAVGAYFEAHIEQGPVLENHERVIGVVSAALGQRWYDVSVQGMEAHAGPTPMELRHDALLAASCIVAEVNRIALDRLPHARGTVGSLEVFPNSRNVIPGGVKLSVDLRAPDDGQLLDMDAALRAACERIAAARGVTIGVEQVVYFPPQPFTPHLVEAVRTNAADLGYSAMDVVSGAGHDAVYLARVAPAAMIFVPCADGISHNEIEDAEPAHLEAGCNVLLRAMLAAAGVVQAADGGVPA</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="52" xmlns="http://uniprot.org/uniprot">
    <accession>A9C1J7</accession>
    <name>A9C1J7_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">Barstar domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Daci_6032</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="4" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the barstar family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX38660.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_6032"/>
    <dbReference type="PRIDE" id="A9C1J7"/>
    <dbReference type="EnsemblBacteria" id="ABX38660">
        <property type="protein sequence ID" value="ABX38660"/>
        <property type="gene ID" value="Daci_6032"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_6032"/>
    <dbReference type="eggNOG" id="COG2732">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_121832_0_1_4"/>
    <dbReference type="OMA" id="HFLYANC"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.370.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000468">
        <property type="entry name" value="Barstar"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035905">
        <property type="entry name" value="Barstar-like_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01337">
        <property type="entry name" value="Barstar"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52038">
        <property type="entry name" value="SSF52038"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Barstar" evidence="2">
        <location>
            <begin position="97"/>
            <end position="181"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00006845"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF01337"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ABX38660.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="192" mass="21856" checksum="D9BB17FA543775CA" modified="2008-01-15" version="1">MTSTQSLQPVRPSVSDAVRWQGSAFHPQPRDAEGHEPVPAGHIHVRERATEMDAPLRKIPDTPLRNVRANIVQSIRAYRVEDLQQAAETLGCHFLYANLAHAQTKADILELLATQFFFPAHFGKNFDALYDCLTDPIHKAGPQPGFVLVLDQIPTTPKFDKEVREQLLDSFRDAAEYWAERKIPFRCFYSFL</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="87" xmlns="http://uniprot.org/uniprot">
    <accession>A9C1Z5</accession>
    <name>A9C1Z5_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">50S ribosomal subunit assembly factor BipA</fullName>
            <ecNumber evidence="2">3.6.5.-</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="2">GTP-binding protein BipA</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="2" type="primary">bipA</name>
        <name evidence="4" type="ordered locus">Daci_2993</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="5" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="2">A 50S ribosomal subunit assembly protein with GTPase activity, required for 50S subunit assembly at low temperatures, may also play a role in translation. Binds GTP and analogs. Binds the 70S ribosome between the 30S and 50S subunits, in a similar position as ribosome-bound EF-G; it contacts a number of ribosomal proteins, both rRNAs and the A-site tRNA.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="2">
            <text>GTP + H2O = GDP + H(+) + phosphate</text>
            <dbReference type="Rhea" id="RHEA:19669"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:37565"/>
            <dbReference type="ChEBI" id="CHEBI:43474"/>
            <dbReference type="ChEBI" id="CHEBI:58189"/>
        </reaction>
    </comment>
    <comment type="subunit">
        <text evidence="2">Monomer.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="2">Cytoplasm</location>
        </subcellularLocation>
        <text evidence="2">Binds to ribosomes.</text>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. BipA subfamily.</text>
    </comment>
    <dbReference type="EC" id="3.6.5.-" evidence="2"/>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX35631.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012204837.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_2993"/>
    <dbReference type="PRIDE" id="A9C1Z5"/>
    <dbReference type="EnsemblBacteria" id="ABX35631">
        <property type="protein sequence ID" value="ABX35631"/>
        <property type="gene ID" value="Daci_2993"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_2993"/>
    <dbReference type="eggNOG" id="COG1217">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_017016_4_0_4"/>
    <dbReference type="OMA" id="MSMLFTI"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005525">
        <property type="term" value="F:GTP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003924">
        <property type="term" value="F:GTPase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043022">
        <property type="term" value="F:ribosome binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0019843">
        <property type="term" value="F:rRNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000049">
        <property type="term" value="F:tRNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000027">
        <property type="term" value="P:ribosomal large subunit assembly"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd03710">
        <property type="entry name" value="BipA_TypA_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.50.250">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00849">
        <property type="entry name" value="BipA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035651">
        <property type="entry name" value="BipA_V"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035647">
        <property type="entry name" value="EFG_III/V"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000640">
        <property type="entry name" value="EFG_V-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR031157">
        <property type="entry name" value="G_TR_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005225">
        <property type="entry name" value="Small_GTP-bd_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000795">
        <property type="entry name" value="T_Tr_GTP-bd_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009000">
        <property type="entry name" value="Transl_B-barrel_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR042116">
        <property type="entry name" value="TypA/BipA_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006298">
        <property type="entry name" value="TypA_GTP-bd"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR42908:SF8">
        <property type="entry name" value="PTHR42908:SF8"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00679">
        <property type="entry name" value="EFG_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00009">
        <property type="entry name" value="GTP_EFTU"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00315">
        <property type="entry name" value="ELONGATNFCT"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50447">
        <property type="entry name" value="SSF50447"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54980">
        <property type="entry name" value="SSF54980"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00231">
        <property type="entry name" value="small_GTP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01394">
        <property type="entry name" value="TypA_BipA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00301">
        <property type="entry name" value="G_TR_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51722">
        <property type="entry name" value="G_TR_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="1 2" id="KW-0342">GTP-binding</keyword>
    <keyword evidence="2" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="2" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0690">Ribosome biogenesis</keyword>
    <keyword evidence="2" id="KW-0694">RNA-binding</keyword>
    <keyword evidence="2" id="KW-0699">rRNA-binding</keyword>
    <keyword evidence="2" id="KW-0820">tRNA-binding</keyword>
    <feature type="domain" description="Tr-type G" evidence="3">
        <location>
            <begin position="3"/>
            <end position="206"/>
        </location>
    </feature>
    <feature type="binding site" evidence="2">
        <location>
            <begin position="15"/>
            <end position="20"/>
        </location>
        <ligand>
            <name>GTP</name>
            <dbReference type="ChEBI" id="CHEBI:37565"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="2">
        <location>
            <begin position="128"/>
            <end position="131"/>
        </location>
        <ligand>
            <name>GTP</name>
            <dbReference type="ChEBI" id="CHEBI:37565"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023134"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00849"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="PROSITE" id="PS51722"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="ABX35631.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="608" mass="67105" checksum="E4894702338A5B29" modified="2008-01-15" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="59" xmlns="http://uniprot.org/uniprot">
    <accession>A9C267</accession>
    <name>A9C267_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">B3_4 domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_3065</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX35703.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_3065"/>
    <dbReference type="PRIDE" id="A9C267"/>
    <dbReference type="EnsemblBacteria" id="ABX35703">
        <property type="protein sequence ID" value="ABX35703"/>
        <property type="gene ID" value="Daci_3065"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_3065"/>
    <dbReference type="eggNOG" id="COG3382">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_076869_1_1_4"/>
    <dbReference type="OMA" id="HRDAHRT"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004826">
        <property type="term" value="F:phenylalanine-tRNA ligase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003723">
        <property type="term" value="F:RNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.50.40.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005146">
        <property type="entry name" value="B3/B4_tRNA-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020825">
        <property type="entry name" value="Phe-tRNA_synthase-like_B3/B4"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03483">
        <property type="entry name" value="B3_4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00873">
        <property type="entry name" value="B3_4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="B3_4" evidence="1">
        <location>
            <begin position="72"/>
            <end position="222"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="SMART" id="SM00873"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX35703.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="241" mass="26194" checksum="41432E27100BAFF9" modified="2008-01-15" version="1">MEITSPLHSQGLILQFSYSPSIPRDFPELASQTLLLRGMSPDVPAHAVIAPFMAQARQNLACTPESEMPSIQAWRRGFARMGLKPTQYRCAAEALLRRLRKEGDLPGLHPLVDLCNAASVAFAIPVAVFDLDRVSGCLQVRPATGSEVYETFSGEIEYPEPGEIIFADTAGRAHARRWCNRQSGHSAVRESTVNALIVTEALHATGKADTRQLVEALQSAAGRLWPEAVSHRSNPSQAALA</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="48" xmlns="http://uniprot.org/uniprot">
    <accession>A9C2C4</accession>
    <name>A9C2C4_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Terminase GpA</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Daci_3430</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="2" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX36068.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012205268.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_3430"/>
    <dbReference type="PRIDE" id="A9C2C4"/>
    <dbReference type="EnsemblBacteria" id="ABX36068">
        <property type="protein sequence ID" value="ABX36068"/>
        <property type="gene ID" value="Daci_3430"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_3430"/>
    <dbReference type="eggNOG" id="COG5525">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_023850_0_1_4"/>
    <dbReference type="OMA" id="PEWASRE"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016887">
        <property type="term" value="F:ATP hydrolysis activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004519">
        <property type="term" value="F:endonuclease activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008866">
        <property type="entry name" value="Phage_lambda_GpA-like"/>
    </dbReference>
    <dbReference type="Pfam" id="PF05876">
        <property type="entry name" value="Terminase_GpA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ABX36068.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="748" mass="83274" checksum="F37E836A8A9001BF" modified="2008-01-15" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="74" xmlns="http://uniprot.org/uniprot">
    <accession>A9C2H6</accession>
    <name>A9C2H6_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="8">Acyl-CoA dehydrogenase domain protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="8" type="ordered locus">Daci_3693</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="9" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>FAD</name>
            <dbReference type="ChEBI" id="CHEBI:57692"/>
        </cofactor>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the acyl-CoA dehydrogenase family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX36325.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012205521.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_3693"/>
    <dbReference type="PRIDE" id="A9C2H6"/>
    <dbReference type="EnsemblBacteria" id="ABX36325">
        <property type="protein sequence ID" value="ABX36325"/>
        <property type="gene ID" value="Daci_3693"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_3693"/>
    <dbReference type="eggNOG" id="COG1960">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_018204_0_2_4"/>
    <dbReference type="OMA" id="NMATWML"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003995">
        <property type="term" value="F:acyl-CoA dehydrogenase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0050660">
        <property type="term" value="F:flavin adenine dinucleotide binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.540.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.110.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006089">
        <property type="entry name" value="Acyl-CoA_DH_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006091">
        <property type="entry name" value="Acyl-CoA_Oxase/DH_mid-dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR046373">
        <property type="entry name" value="Acyl-CoA_Oxase/DH_mid-dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036250">
        <property type="entry name" value="AcylCo_DH-like_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009075">
        <property type="entry name" value="AcylCo_DH/oxidase_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013786">
        <property type="entry name" value="AcylCoA_DH/ox_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037069">
        <property type="entry name" value="AcylCoA_DH/ox_N_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009100">
        <property type="entry name" value="AcylCoA_DH/oxidase_NM_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00441">
        <property type="entry name" value="Acyl-CoA_dh_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02770">
        <property type="entry name" value="Acyl-CoA_dh_M"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02771">
        <property type="entry name" value="Acyl-CoA_dh_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47203">
        <property type="entry name" value="SSF47203"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56645">
        <property type="entry name" value="SSF56645"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00072">
        <property type="entry name" value="ACYL_COA_DH_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00073">
        <property type="entry name" value="ACYL_COA_DH_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-0274">FAD</keyword>
    <keyword evidence="3" id="KW-0285">Flavoprotein</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Acyl-CoA_dh_N" evidence="7">
        <location>
            <begin position="6"/>
            <end position="116"/>
        </location>
    </feature>
    <feature type="domain" description="Acyl-CoA_dh_M" evidence="6">
        <location>
            <begin position="121"/>
            <end position="217"/>
        </location>
    </feature>
    <feature type="domain" description="Acyl-CoA_dh_1" evidence="5">
        <location>
            <begin position="229"/>
            <end position="379"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001974"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00009347"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022630"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022827"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="Pfam" id="PF00441"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="Pfam" id="PF02770"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="Pfam" id="PF02771"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="ABX36325.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="388" mass="41854" checksum="08D9EE3098358D4D" modified="2008-01-15" version="1">MDFELNDDQRAFAESARAFAQAELAPHAAHWDRESIFPREAIAKAGELGFCGLYAPENAGGLQLPRLDATMVFEELAAVDPSTTAFITIHNMATWMLGTWATDAVRAEWGEALTSGRKLASYCLTEPGAGSDAGSLKTRAELAGHEYIINGAKAFISGAGSTDMLVLMARTGDAGSGASGISAFAVPADLPGISYGKKEEKMGWNSQPTRVISFDNVRIPAQNLLGREGEGFKIAMKGLDGGRINIATCSVGAAQGALTQAQQYMHERKQFGKPIASFQALQFKLADMATELVAARQMVRLAASKLDAGARDASTYCAMAKRFVTDAGFMVCNEALQLHGGYGYIREYPLERLMRDARVHQILEGTNEIMRVIIARRMLEGDAPDMIR</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="75" xmlns="http://uniprot.org/uniprot">
    <accession>A9C2H8</accession>
    <name>A9C2H8_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Methylmalonate-semialdehyde dehydrogenase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ordered locus">Daci_3695</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="5" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX36327.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012205523.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_3695"/>
    <dbReference type="PRIDE" id="A9C2H8"/>
    <dbReference type="EnsemblBacteria" id="ABX36327">
        <property type="protein sequence ID" value="ABX36327"/>
        <property type="gene ID" value="Daci_3695"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_3695"/>
    <dbReference type="eggNOG" id="COG1012">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_005391_1_10_4"/>
    <dbReference type="OMA" id="VGAAKEW"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004491">
        <property type="term" value="F:methylmalonate-semialdehyde dehydrogenase (acylating) activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd07085">
        <property type="entry name" value="ALDH_F6_MMSDH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.309.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.605.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016161">
        <property type="entry name" value="Ald_DH/histidinol_DH"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016163">
        <property type="entry name" value="Ald_DH_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016160">
        <property type="entry name" value="Ald_DH_CS_CYS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016162">
        <property type="entry name" value="Ald_DH_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015590">
        <property type="entry name" value="Aldehyde_DH_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010061">
        <property type="entry name" value="MeMal-semiAld_DH"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43866">
        <property type="entry name" value="PTHR43866"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00171">
        <property type="entry name" value="Aldedh"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53720">
        <property type="entry name" value="SSF53720"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01722">
        <property type="entry name" value="MMSDH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00070">
        <property type="entry name" value="ALDEHYDE_DEHYDR_CYS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Aldedh" evidence="3">
        <location>
            <begin position="23"/>
            <end position="486"/>
        </location>
    </feature>
    <feature type="active site" evidence="2">
        <location>
            <position position="291"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023002"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU10008"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF00171"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="ABX36327.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="507" mass="53754" checksum="B1E196A547D900FF" modified="2008-01-15" version="1">MNASTSAKVLAPTVKLLINGKLVESQSTQWRDVVNPATQEVLARVPFATPDEVNAAVANAKEAFKTWRKTPIGQRARIFLKLQQLIRENMKELAALLTAEQGKTLPDAEGDVFRGLEVVEHAANIGSLQLGELANNVANGVDTYSVLQPLGVCAGITPFNFPAMIPLWMFPMAIATGNTFVLKPSEQDPMVTMRLCELALEAGIPPGVLNVVHGGEDVVNAICDHPDIKAISFVGSTKVGTHVYNRASLAGKRVQCMMGAKNHAIVMPDANKEQTLNALLGAAFGAAGQRCMALSVAVLVGDAQKWIPELVEKSKTLKVSGGTEPGTDVGPLVSCAALSRVESLIERGLADGAKLELDGRKPQVAGYDKGNFVGPTVFSGVKPGMSVYDQEIFGPVLCLAAADSLDEAIEFINANPNGNGTAIFTQSGAAARKFQEDIDVGQVGINVPIPVPVPLFSFTGSRASKLGDLGPYGKQVVLFYTQTKTVTARWFDDSTTSQGVNTTISLR</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="65" xmlns="http://uniprot.org/uniprot">
    <accession>A9C2M4</accession>
    <name>A9C2M4_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Lactamase_B domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_3741</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX36373.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012205567.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_3741"/>
    <dbReference type="PRIDE" id="A9C2M4"/>
    <dbReference type="EnsemblBacteria" id="ABX36373">
        <property type="protein sequence ID" value="ABX36373"/>
        <property type="gene ID" value="Daci_3741"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_3741"/>
    <dbReference type="eggNOG" id="COG2220">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_020884_0_2_4"/>
    <dbReference type="OMA" id="LFDPVWG"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0070290">
        <property type="term" value="F:N-acylphosphatidylethanolamine-specific phospholipase D activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008270">
        <property type="term" value="F:zinc ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.60.15.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001279">
        <property type="entry name" value="Metallo-B-lactamas"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR024884">
        <property type="entry name" value="NAPE-PLD"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036866">
        <property type="entry name" value="RibonucZ/Hydroxyglut_hydro"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12706">
        <property type="entry name" value="Lactamase_B_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF038896">
        <property type="entry name" value="NAPE-PLD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56281">
        <property type="entry name" value="SSF56281"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Lactamase_B" evidence="1">
        <location>
            <begin position="94"/>
            <end position="292"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF12706"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX36373.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="363" mass="40675" checksum="D1935ED1A2E33267" modified="2008-01-15" version="1">MKTPRIFRAPIADYAQSPQSAGGRFRNVHPRPANAPQPDAKVMWDFFFNKPKDTEPAAPLPVQRLTPADLAAAPERSLYRLGHSTLLMKLRGGWWITDPVFAERASPFSFIGPKRFHAPPIALHELPALRGVVLSHDHYDHLDRATIRALAPRVDIFLCTLGVGDRLMDWGVAPEKVRQFDWWQDVQVDGLRFTATPAQHFSGRGLRDGNRTLWASWVIEDLESADTLRVFFSGDGGYFDGFAEIGRRFGPFDLTLMETGAYDPHWPYVHMHPAQTVQAHRDLGGRWLLPIHNGTFSLAMHAWWDPFERVLALGAEHGIAVATPMMGERVDLAAPHAGERWWRALVSPAVQDAAASAPQAQPR</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="55" xmlns="http://uniprot.org/uniprot">
    <accession>A9C2S2</accession>
    <name>A9C2S2_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Cobalamin (Vitamin B12) biosynthesis CbiX protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ordered locus">Daci_3789</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="5" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX36421.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012205615.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_3789"/>
    <dbReference type="PRIDE" id="A9C2S2"/>
    <dbReference type="EnsemblBacteria" id="ABX36421">
        <property type="protein sequence ID" value="ABX36421"/>
        <property type="gene ID" value="Daci_3789"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_3789"/>
    <dbReference type="eggNOG" id="COG2138">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="eggNOG" id="COG3411">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_093060_0_0_4"/>
    <dbReference type="OMA" id="PRCSARG"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016829">
        <property type="term" value="F:lyase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002762">
        <property type="entry name" value="CbiX-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036249">
        <property type="entry name" value="Thioredoxin-like_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01903">
        <property type="entry name" value="CbiX"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52833">
        <property type="entry name" value="SSF52833"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0456">Lyase</keyword>
    <keyword evidence="1" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="3">
        <location>
            <begin position="1"/>
            <end position="20"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023239"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="ABX36421.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="273" mass="29133" checksum="BDC50DBE6ACD73B4" modified="2008-01-15" version="1">MPPPAGCASASFPMNSSETSIPPGPDAVIVLGRGGTGAASRQSLIELADALRQTLEPACKVVTSFVDKAAPSLPEALQQCLPARSIVVLPLFSPDEPALLRWLHKLAMRWRSQLPDQGVQVRFADHLLGAAAMPALLLPQIRQALQNPDVAEAAGDQWQHDPQAWSQVPDHQHHALVCTGPRCTALGAVAVWQSLGEAVQASSELRARLRLLQTSCQYPCNHGPLAIVYPDGVWYGRLTAGNAAEVVEAHVLSRQVCAEHHVHGPVELGTQAS</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="47" xmlns="http://uniprot.org/uniprot">
    <accession>A9C2S8</accession>
    <name>A9C2S8_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Daci_4101</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="2" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX36732.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012205924.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_4101"/>
    <dbReference type="PRIDE" id="A9C2S8"/>
    <dbReference type="EnsemblBacteria" id="ABX36732">
        <property type="protein sequence ID" value="ABX36732"/>
        <property type="gene ID" value="Daci_4101"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_4101"/>
    <dbReference type="eggNOG" id="ENOG5033ZYE">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_1719355_0_0_4"/>
    <dbReference type="OMA" id="RYGRWAQ"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ABX36732.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="152" mass="18045" checksum="E39889A5AC8842D3" modified="2008-01-15" version="1">MKRDLNLTVPVELRQAEELLERYGRWAQDRYKKQRCASAEGKYVPPPLPMKDREEPMEPFMPDWSAMQVQRALQVVPMQFRRILLALYIPQKEHPNAARRRMNATNQQWHQGRINGLRSFWSSYSRRDLRNLTRDAIIATNYRDTESCAPVT</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="43" xmlns="http://uniprot.org/uniprot">
    <accession>A9C324</accession>
    <name>A9C324_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Daci_4197</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="2" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX36828.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012206001.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_4197"/>
    <dbReference type="PRIDE" id="A9C324"/>
    <dbReference type="EnsemblBacteria" id="ABX36828">
        <property type="protein sequence ID" value="ABX36828"/>
        <property type="gene ID" value="Daci_4197"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_4197"/>
    <dbReference type="eggNOG" id="COG2304">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_1667334_0_0_4"/>
    <dbReference type="OMA" id="RTEITLW"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036465">
        <property type="entry name" value="vWFA_dom_sf"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53300">
        <property type="entry name" value="SSF53300"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ABX36828.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="162" mass="17786" checksum="0E4D500EE7E2B987" modified="2008-01-15" version="1">MMLHLVCDISGSMSEGGKPFILRTLATTVAQWVRQGYGKAEIRLCAWSSEARSIPDWSVTDDLPVEMLVCHGSTNGQALVQLLGNEPDGKVLILTDGFWTRDDVKTLSRWQEGLPPDTLRVIQIGADANPHLSKGLKGAKVFAAEEVLAVLDNWLQADEEWA</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="30" xmlns="http://uniprot.org/uniprot">
    <accession>A9C3L6</accession>
    <name>A9C3L6_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Daci_4698</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="2" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX37327.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012206497.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="PRIDE" id="A9C3L6"/>
    <dbReference type="EnsemblBacteria" id="ABX37327">
        <property type="protein sequence ID" value="ABX37327"/>
        <property type="gene ID" value="Daci_4698"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_4698"/>
    <dbReference type="HOGENOM" id="CLU_617811_0_0_4"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ABX37327.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="443" mass="49194" checksum="A614ED59AA3304CD" modified="2008-01-15" version="1">MNLRTVGSTIALSILLTACATTYEDRAIKDKNYSGALYSVSYYEAKAGRDDVDKLVARIKDAAGSQYQVQFYEDTKKFIQYKEKNRAFFKDMVLYMANAQRGGLLDAAQAADINQILYKELAQQAILKPTILNAELKESYPDLPKYMGAAYESEYRRALNGELPDMEAYASVYSAMKNSDNAKAAALLPVVRTKMADLIKSMGPGAWRDLAGVLAVYTATRDPVIEQHVLQFVTRADLSKKQLKEEVATVLPDLAAKARAERELQVKIVSDSNDPFIDELPKALEDFDEWITVEDEAKRKLTIARLRITERPGNPLVRTQTVSDLDFATRLLIPKNASVLYDTTTTNYEISWSMNVSDSAGKGSKVISGKKSEQKIECSNIRYKNVFGGEGEVGLIPTSIQGVCNRKSGINFDAIRSEAVKEIAGEIVQLLRKDQKVSGTTRS</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="60" xmlns="http://uniprot.org/uniprot">
    <accession>A9BLH1</accession>
    <name>A9BLH1_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Diacylglycerol kinase catalytic region</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_3825</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX36456.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012205650.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_3825"/>
    <dbReference type="PRIDE" id="A9BLH1"/>
    <dbReference type="EnsemblBacteria" id="ABX36456">
        <property type="protein sequence ID" value="ABX36456"/>
        <property type="gene ID" value="Daci_3825"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_3825"/>
    <dbReference type="eggNOG" id="COG1597">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_045532_5_0_4"/>
    <dbReference type="OMA" id="TMNLFAR"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003951">
        <property type="term" value="F:NAD+ kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016310">
        <property type="term" value="P:phosphorylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.10330">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017438">
        <property type="entry name" value="ATP-NAD_kinase_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001206">
        <property type="entry name" value="Diacylglycerol_kinase_cat_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016064">
        <property type="entry name" value="NAD/diacylglycerol_kinase_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00781">
        <property type="entry name" value="DAGK_cat"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00046">
        <property type="entry name" value="DAGKc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF111331">
        <property type="entry name" value="SSF111331"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50146">
        <property type="entry name" value="DAGK"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0418">Kinase</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="DAGKc" evidence="1">
        <location>
            <begin position="18"/>
            <end position="152"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS50146"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX36456.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="335" mass="36113" checksum="55EA56DD06BB1532" modified="2008-01-15" version="1">MTPTYSESQPPPPRLDPAGPIHLIVPLRPGADLEQLRARLTSVPALQQRSVQWHVPGARADIVHLAARAVDRASQDGGLVVAAGGDGTINAVAAAAWARGVPMGVVPLGTFNYFAREQALSLDPAQAVQDILQALQAGQMRPVNVGLVNERLFLVNASLGLYPRLLDERERASTRFGRTRLVAIAASIWSILRGGSARRWRIALRSDRQAPLQQQEHLASTLFVGNNPMQLERVGIAEARAVADGQHLAAVLLLPQASEAPARVVWNAVLGRLAQDDAVASLACTELVAEPAGRRPRRLKVAFDGEREWMAPPIRFRLGEKPLWLVVPGEAAPSS</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="65" xmlns="http://uniprot.org/uniprot">
    <accession>A9BLR8</accession>
    <name>A9BLR8_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="5">Azurin</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="7" type="ordered locus">Daci_4226</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="8" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="5">Transfers electrons from cytochrome c551 to cytochrome oxidase.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1 5">Periplasm</location>
        </subcellularLocation>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX36857.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012206029.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_4226"/>
    <dbReference type="PRIDE" id="A9BLR8"/>
    <dbReference type="EnsemblBacteria" id="ABX36857">
        <property type="protein sequence ID" value="ABX36857"/>
        <property type="gene ID" value="Daci_4226"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_4226"/>
    <dbReference type="eggNOG" id="COG3241">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_112845_1_0_4"/>
    <dbReference type="OMA" id="MGHNFVL"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0042597">
        <property type="term" value="C:periplasmic space"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005507">
        <property type="term" value="F:copper ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009055">
        <property type="term" value="F:electron transfer activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd13922">
        <property type="entry name" value="Azurin"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.40.420">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014068">
        <property type="entry name" value="Azurin"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000923">
        <property type="entry name" value="BlueCu_1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR028871">
        <property type="entry name" value="BlueCu_1_BS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008972">
        <property type="entry name" value="Cupredoxin"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00127">
        <property type="entry name" value="Copper-bind"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF49503">
        <property type="entry name" value="SSF49503"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR02695">
        <property type="entry name" value="azurin"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00196">
        <property type="entry name" value="COPPER_BLUE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="5" id="KW-0186">Copper</keyword>
    <keyword evidence="4" id="KW-1015">Disulfide bond</keyword>
    <keyword evidence="3 5" id="KW-0249">Electron transport</keyword>
    <keyword evidence="5" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="2 5" id="KW-0574">Periplasm</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="5" id="KW-0732">Signal</keyword>
    <keyword evidence="5" id="KW-0813">Transport</keyword>
    <feature type="signal peptide" evidence="5">
        <location>
            <begin position="1"/>
            <end position="23"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5006522008" description="Azurin" evidence="5">
        <location>
            <begin position="24"/>
            <end position="152"/>
        </location>
    </feature>
    <feature type="domain" description="Copper-bind" evidence="6">
        <location>
            <begin position="24"/>
            <end position="150"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004418"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022764"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022982"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023157"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="RuleBase" id="RU363017"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="Pfam" id="PF00127"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="ABX36857.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="152" mass="15904" checksum="FBE13FE4D9E8793C" modified="2008-01-15" version="1">MAKQWKPVLLALAMTAVAAPVLAADCAVEIEGNDAMQFNKPTISVPASCKQFTVKLKHVGKLPKTAMGHNWVLSKTADLQPVANDGIAAGAAKDFVKEKDARVIAHTKVIGGGESDSVTFSTAALKAGEAYSYFCSFPGHSALMKGTLTLAK</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="63" xmlns="http://uniprot.org/uniprot">
    <accession>A9BLV2</accession>
    <name>A9BLV2_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">TsaA-like domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="4" type="ordered locus">Daci_4260</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="5" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="2">Belongs to the tRNA methyltransferase O family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX36891.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012206063.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_4260"/>
    <dbReference type="PRIDE" id="A9BLV2"/>
    <dbReference type="EnsemblBacteria" id="ABX36891">
        <property type="protein sequence ID" value="ABX36891"/>
        <property type="gene ID" value="Daci_4260"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_4260"/>
    <dbReference type="eggNOG" id="COG1720">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_013458_2_0_4"/>
    <dbReference type="OMA" id="VCRLEIF"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="CDD" id="cd09281">
        <property type="entry name" value="UPF0066"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.30.70">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023370">
        <property type="entry name" value="TrmO-like_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023368">
        <property type="entry name" value="UPF0066_cons_site"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR040372">
        <property type="entry name" value="YaeB-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036413">
        <property type="entry name" value="YaeB-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036414">
        <property type="entry name" value="YaeB_N_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR12818">
        <property type="entry name" value="PTHR12818"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01980">
        <property type="entry name" value="TrmO"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF118196">
        <property type="entry name" value="SSF118196"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00104">
        <property type="entry name" value="tRNA_TsaA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01318">
        <property type="entry name" value="TSAA_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51668">
        <property type="entry name" value="TSAA_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0949">S-adenosyl-L-methionine</keyword>
    <feature type="domain" description="TsaA-like" evidence="3">
        <location>
            <begin position="13"/>
            <end position="143"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022691"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00033753"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="PROSITE" id="PS51668"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="ABX36891.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="166" mass="18298" checksum="F478593A0FB4CA9F" modified="2008-01-15" version="1">MSAAGSTAQAIACRPIGHVRSRFTDPVGMPIQTAGAADEAGSVELLPEFEAGLRDIEGFDYLILITHLHQAVEKLEVVPFMDDSSHGVFATRAPARPNRLGLSIVRLVRREGLLLHFLGNDMLDGTPVLDIKPYVPRLDVRQTERIGWFGKRIDQMPDIRADARMA</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="56" xmlns="http://uniprot.org/uniprot">
    <accession>A9BLW5</accession>
    <name>A9BLW5_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Amidohydrolase 2</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_4273</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX36904.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_4273"/>
    <dbReference type="PRIDE" id="A9BLW5"/>
    <dbReference type="EnsemblBacteria" id="ABX36904">
        <property type="protein sequence ID" value="ABX36904"/>
        <property type="gene ID" value="Daci_4273"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_4273"/>
    <dbReference type="eggNOG" id="COG3618">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_064039_2_1_4"/>
    <dbReference type="OMA" id="HIIDPRF"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016787">
        <property type="term" value="F:hydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006680">
        <property type="entry name" value="Amidohydro-rel"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR032466">
        <property type="entry name" value="Metal_Hydrolase"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04909">
        <property type="entry name" value="Amidohydro_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51556">
        <property type="entry name" value="SSF51556"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Amidohydro-rel" evidence="1">
        <location>
            <begin position="28"/>
            <end position="292"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF04909"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX36904.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="296" mass="31781" checksum="64023369071DE52D" modified="2008-01-15" version="1">MAMNASTIAVAHSAGTNRPLRTLPPLACDSHMHIFDARFAPSPHWPRTPPQADVAMYRQLQQRLGTSRAVVVTPSTYGTDNACTLDALDRLGDVARGVAVVAHDVADAELDRLAAHRVCGVRVNFVSPQSWGETTAHMLVTLAHRVARLGWHVQVFVQPEQLVALEPVLGALPVPLVVDHLGRIDPAEGMEGAAHAALRRLLDGGNTWVKLSGAYMRSSVGGPSYADTLPLGRDLVRAAPERLVWGSDWPHTTEAPGSVNDADLVDLLQAWAGTDEAMDRILVDNPARLYGFDGAA</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="63" xmlns="http://uniprot.org/uniprot">
    <accession>A9BMB2</accession>
    <name>A9BMB2_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Short-chain dehydrogenase/reductase SDR</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Daci_4828</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="2" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX37457.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012206627.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_4828"/>
    <dbReference type="PRIDE" id="A9BMB2"/>
    <dbReference type="EnsemblBacteria" id="ABX37457">
        <property type="protein sequence ID" value="ABX37457"/>
        <property type="gene ID" value="Daci_4828"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_4828"/>
    <dbReference type="eggNOG" id="COG1028">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_010194_1_2_4"/>
    <dbReference type="OMA" id="ILTTWVW"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036291">
        <property type="entry name" value="NAD(P)-bd_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002347">
        <property type="entry name" value="SDR_fam"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00081">
        <property type="entry name" value="GDHRDH"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51735">
        <property type="entry name" value="SSF51735"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ABX37457.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="296" mass="31718" checksum="445F6FF4522918FB" modified="2008-01-15" version="1">MTLDDLIYKPGLLQGERILVTGGGTGLGRVMAEAFLMMGADIYLCGRRGAVVEQTAQELVQQHGGRATGHACDVRQPEAVEQMIEAIWADGGALTGLVNNAAGNFVSRTEDLSMRAFDAVANIVMRGSFNLTLECGRRWLAEGRKASVLSILTTWVWNGSAFTVPSAMAKSGVHAMTQSLAVEWGNRGIRFNAIAPGLFPTEGMSARLNPQGGEHVRADNPMGRNGRMPELANLAVFLMSRQAEYLTGQTIAIDGGQYQATGGNFAGLASWSDQDWANARSAIESRNAADRQQRTA</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="78" xmlns="http://uniprot.org/uniprot">
    <accession>A9BN74</accession>
    <name>A9BN74_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="5">Glutamate dehydrogenase</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="11" type="ordered locus">Daci_5140</name>
    </gene>
    <organism evidence="11 12">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="11 12" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="12">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="12" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="12">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="2">Catalyzes the reversible oxidative deamination of glutamate to alpha-ketoglutarate and ammonia.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>H2O + L-glutamate + NADP(+) = 2-oxoglutarate + H(+) + NADPH + NH4(+)</text>
            <dbReference type="Rhea" id="RHEA:11612"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:16810"/>
            <dbReference type="ChEBI" id="CHEBI:28938"/>
            <dbReference type="ChEBI" id="CHEBI:29985"/>
            <dbReference type="ChEBI" id="CHEBI:57783"/>
            <dbReference type="ChEBI" id="CHEBI:58349"/>
            <dbReference type="EC" id="1.4.1.4"/>
        </reaction>
    </comment>
    <comment type="similarity">
        <text evidence="3 5 9">Belongs to the Glu/Leu/Phe/Val dehydrogenases family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX37769.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012206939.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_5140"/>
    <dbReference type="PRIDE" id="A9BN74"/>
    <dbReference type="EnsemblBacteria" id="ABX37769">
        <property type="protein sequence ID" value="ABX37769"/>
        <property type="gene ID" value="Daci_5140"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_5140"/>
    <dbReference type="eggNOG" id="COG0334">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_025763_2_1_4"/>
    <dbReference type="OMA" id="HEPEFIQ"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004354">
        <property type="term" value="F:glutamate dehydrogenase (NADP+) activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="RHEA"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000166">
        <property type="term" value="F:nucleotide binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006520">
        <property type="term" value="P:cellular amino acid metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd05313">
        <property type="entry name" value="NAD_bind_2_Glu_DH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR046346">
        <property type="entry name" value="Aminiacid_DH-like_N_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006095">
        <property type="entry name" value="Glu/Leu/Phe/Val_DH"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR033524">
        <property type="entry name" value="Glu/Leu/Phe/Val_DH_AS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006096">
        <property type="entry name" value="Glu/Leu/Phe/Val_DH_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006097">
        <property type="entry name" value="Glu/Leu/Phe/Val_DH_dimer_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014362">
        <property type="entry name" value="Glu_DH"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036291">
        <property type="entry name" value="NAD(P)-bd_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR033922">
        <property type="entry name" value="NAD_bind_Glu_DH"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00208">
        <property type="entry name" value="ELFV_dehydrog"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02812">
        <property type="entry name" value="ELFV_dehydrog_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF000185">
        <property type="entry name" value="Glu_DH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00082">
        <property type="entry name" value="GLFDHDRGNASE"/>
    </dbReference>
    <dbReference type="SMART" id="SM00839">
        <property type="entry name" value="ELFV_dehydrog"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51735">
        <property type="entry name" value="SSF51735"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53223">
        <property type="entry name" value="SSF53223"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00074">
        <property type="entry name" value="GLFV_DEHYDROGENASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="7" id="KW-0520">NAD</keyword>
    <keyword evidence="7" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="4 5 9" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="12" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="ELFV_dehydrog" evidence="10">
        <location>
            <begin position="203"/>
            <end position="445"/>
        </location>
    </feature>
    <feature type="active site" description="Proton donor" evidence="6">
        <location>
            <position position="127"/>
        </location>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <position position="91"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <position position="112"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <position position="115"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <position position="166"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <position position="210"/>
        </location>
        <ligand>
            <name>NAD(+)</name>
            <dbReference type="ChEBI" id="CHEBI:57540"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <position position="241"/>
        </location>
        <ligand>
            <name>NAD(+)</name>
            <dbReference type="ChEBI" id="CHEBI:57540"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <position position="379"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="site" description="Important for catalysis" evidence="8">
        <location>
            <position position="167"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001463"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00003868"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00006382"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023002"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="PIRNR" id="PIRNR000185"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="PIRSR" id="PIRSR000185-1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="PIRSR" id="PIRSR000185-2"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="PIRSR" id="PIRSR000185-3"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="RuleBase" id="RU004417"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="10">
        <source>
            <dbReference type="SMART" id="SM00839"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="EMBL" id="ABX37769.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="447" mass="48020" checksum="0CE813555F44F505" modified="2008-01-15" version="1">MKYESVGQFLEEVAQRNPGQPEFLQAVTEVMESLWPFIEKNPKYAEHGLLERLVEPERVVMFRVSWTDDKGQVQVNRGFRIQHSMAIGPYKGGLRFHPSVTLSVLKFLAFEQTFKNALTTLPMGGGKGGSDFDPKGKSPAEVMRFCQAFVTELFRHVGPDTDVPAGDIGVGGREVGFMAGMYKKLSNSAASVFTGKGLSFGGSLIRPEATGYGTVYFAQEMLATRGQSFAGKTVSVSGSGNVAQYAVEKALQLGAKVVSVSDSSGTVYDQDGFTTEKLAILMDVKNHRYGRVDEYAKLVGAEFLRGKTPWHLKVDVALPCATQNELTEEDAKVLIVNGVVCVAEGANMPSTIEAAKAFEKAGVLYAPGKASNAGGVATSGLEMSQNAARLSWPAEEVDARLLQIMQGIHAACLKYGKREDGTVSYIDGANIAGFVKVADAMLAQGVI</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="62" xmlns="http://uniprot.org/uniprot">
    <accession>A9BN90</accession>
    <name>A9BN90_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Pyridoxal-5'-phosphate-dependent protein beta subunit</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ordered locus">Daci_5156</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="5" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>pyridoxal 5'-phosphate</name>
            <dbReference type="ChEBI" id="CHEBI:597326"/>
        </cofactor>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX37785.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012206955.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_5156"/>
    <dbReference type="PRIDE" id="A9BN90"/>
    <dbReference type="EnsemblBacteria" id="ABX37785">
        <property type="protein sequence ID" value="ABX37785"/>
        <property type="gene ID" value="Daci_5156"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_5156"/>
    <dbReference type="eggNOG" id="COG0031">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_046285_0_0_4"/>
    <dbReference type="OMA" id="ESIFEQM"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.1100">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001926">
        <property type="entry name" value="PLP-dep"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036052">
        <property type="entry name" value="Trypto_synt_PLP_dependent"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00291">
        <property type="entry name" value="PALP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53686">
        <property type="entry name" value="SSF53686"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0663">Pyridoxal phosphate</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="PALP" evidence="3">
        <location>
            <begin position="35"/>
            <end position="319"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001933"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022898"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF00291"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="ABX37785.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="355" mass="38811" checksum="C3FD4021EB1003E5" modified="2008-01-15" version="1">MAAMPHTTSSWLHEAINRIEADYQRSADTHLIPLPLPGFADLGIDLYLKDESTHPTGSLKHRLARSLFLYALCNGWVHEGSTIVEASSGSTAVSEAYFARLLGLPFVAVMPRSTSAEKIALIEFYGGRCHLVDSAGQVYDEARAVAAQTGGHYMDQFTYAERATDWRGNNNIAESMFTQMRRERHAVPRWIVVGAGTGGTSATIGRYVRFQRHATGICVADPEGSVFAAYHRTGDATLTAPGSRIEGIGRPRVEPSFVRTLVDRMEEVADCDSLAAMRSLSALLGRRVGPSTGTNYVAMLRLASEMRQRGEQGSILSLLCDAGERYLPTYHDADWVMQRIGDCGPAQARIAQLQS</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="59" xmlns="http://uniprot.org/uniprot">
    <accession>A9BNC9</accession>
    <name>A9BNC9_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_5195</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX37824.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_5195"/>
    <dbReference type="PRIDE" id="A9BNC9"/>
    <dbReference type="EnsemblBacteria" id="ABX37824">
        <property type="protein sequence ID" value="ABX37824"/>
        <property type="gene ID" value="Daci_5195"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_5195"/>
    <dbReference type="eggNOG" id="COG4966">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_932655_0_0_4"/>
    <dbReference type="OMA" id="YAMRVIG"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043683">
        <property type="term" value="P:type IV pilus assembly"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012902">
        <property type="entry name" value="N_methyl_site"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR032092">
        <property type="entry name" value="PilW"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07963">
        <property type="entry name" value="N_methyl"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF16074">
        <property type="entry name" value="PilW"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR02532">
        <property type="entry name" value="IV_pilin_GFxxxE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00409">
        <property type="entry name" value="PROKAR_NTER_METHYL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="34"/>
            <end position="57"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX37824.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="310" mass="33111" checksum="568CEEF15109BD9E" modified="2008-01-15" version="1">MAAPRIMKPNLPHLPIRPRRHAFARPLAQKGFTLLELMVGVAIGLLVVAVATAALMVSRGVSGTVSDASGIQQQAAYAMRVIGLQLRQAGSLYLNLDPRNQKPAAALVTSTPVAFETTAKSDSGLEFDPSLNTVSGTATPTTLTVGYRRYKELVYTDAAEQSQARNCVGGPANSSADQRIDNVFQLSGSQLQCSGNGAAAQTLVQNVADFQVRYLIQDNTKPGSPGIQYVPSANVDAWTTVEWSKVRGVEVCLVLYGNEPIDLPAGSSYVGCDGTSVNMTTLTGQRNRRMHIAYRNVFQLRSQGLIGSVL</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="57" xmlns="http://uniprot.org/uniprot">
    <accession>A9BND8</accession>
    <name>A9BND8_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">GCN5-related N-acetyltransferase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_5204</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX37833.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_5204"/>
    <dbReference type="PRIDE" id="A9BND8"/>
    <dbReference type="EnsemblBacteria" id="ABX37833">
        <property type="protein sequence ID" value="ABX37833"/>
        <property type="gene ID" value="Daci_5204"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_5204"/>
    <dbReference type="eggNOG" id="COG1247">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_013985_18_2_4"/>
    <dbReference type="OMA" id="QTWREAY"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008080">
        <property type="term" value="F:N-acetyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016181">
        <property type="entry name" value="Acyl_CoA_acyltransferase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000182">
        <property type="entry name" value="GNAT_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00583">
        <property type="entry name" value="Acetyltransf_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55729">
        <property type="entry name" value="SSF55729"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51186">
        <property type="entry name" value="GNAT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="N-acetyltransferase" evidence="1">
        <location>
            <begin position="4"/>
            <end position="173"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS51186"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX37833.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="173" mass="19389" checksum="2400253E5F8A6A67" modified="2008-01-15" version="1">MSSIQVRPATLRDAKAIAQIHTASAMEAYRGLVPDDQLKSMSSVEKRQAYWREAIEFCEPQVQVAIDGDKIVGFVGFDRSRDEKSRQTTGEIWAIYAAPTHWNQGVGVALWDAARDGLLEEGCTNVTSWVPLRNERALRFHELAGFKREMSTAKTAQVGALKIEEVRLKRALN</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="48" xmlns="http://uniprot.org/uniprot">
    <accession>A9BNI0</accession>
    <name>A9BNI0_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Daci_5246</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="4" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the YggT family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX37875.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_5246"/>
    <dbReference type="PRIDE" id="A9BNI0"/>
    <dbReference type="EnsemblBacteria" id="ABX37875">
        <property type="protein sequence ID" value="ABX37875"/>
        <property type="gene ID" value="Daci_5246"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_5246"/>
    <dbReference type="eggNOG" id="COG0762">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_089905_0_1_4"/>
    <dbReference type="OMA" id="MIDFSPM"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003425">
        <property type="entry name" value="CCB3/YggT"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33219">
        <property type="entry name" value="PTHR33219"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02325">
        <property type="entry name" value="YGGT"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="2" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="30"/>
            <end position="52"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="92"/>
            <end position="114"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="126"/>
            <end position="150"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="177"/>
            <end position="205"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00010894"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ABX37875.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="214" mass="23320" checksum="F60DFB1AC0412E77" modified="2008-01-15" version="1">MGGMRQLSSHAVPGPDGRGPIFLPQSYNAMLFQIVSFLLDVVVGLLTGVCLLRMYMQAQRVPFGNPVGQLVFALSDWIVMPLRRIIKPAGRWDMSSLIAAFLLQLLQFVLLWLLMGGQSTVVALPWLALCGLARVALSGMVGVLLIYAILSWVQPQSPMYGVLQRLSEPMLRPIRRVVPLIGGIDLSALVALVLLQIALMVLAYIQGSGLMLLA</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2020-10-07" version="53" xmlns="http://uniprot.org/uniprot">
    <accession>A9BNM2</accession>
    <name>A9BNM2_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="6">EamA domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="7" type="ordered locus">Daci_5288</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="8" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX37917.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_5288"/>
    <dbReference type="EnsemblBacteria" id="ABX37917">
        <property type="protein sequence ID" value="ABX37917"/>
        <property type="gene ID" value="Daci_5288"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_5288"/>
    <dbReference type="eggNOG" id="COG0697">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_069810_0_0_4"/>
    <dbReference type="OMA" id="HRAAWVL"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015095">
        <property type="term" value="F:magnesium ion transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000620">
        <property type="entry name" value="EamA_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008521">
        <property type="entry name" value="Mg_trans_NIPA"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00892">
        <property type="entry name" value="EamA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF05653">
        <property type="entry name" value="Mg_trans_NIPA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4 5" id="KW-0472">Membrane</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 5" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="3 5" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="28"/>
            <end position="45"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="66"/>
            <end position="84"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="96"/>
            <end position="118"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="125"/>
            <end position="147"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="153"/>
            <end position="171"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="183"/>
            <end position="205"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="225"/>
            <end position="244"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="256"/>
            <end position="277"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="313"/>
            <end position="330"/>
        </location>
    </feature>
    <feature type="domain" description="EamA" evidence="6">
        <location>
            <begin position="35"/>
            <end position="170"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="Pfam" id="PF00892"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="ABX37917.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="332" mass="35358" checksum="8FCBDDD2B64CE513" modified="2008-01-15" version="1">MLAGTQSPAPCRRCLPFFADMLSSLQDLTWLWVPVVLFAAAAQTVRNTAQRSLTAELGTLPATLVRFLYGLPFAGIYLLALYLGGDGAWSLPRFSWAYLGWIALGAFFQVAATAALLLAMKERNFAVAVTLSKTEVLQVALFAGIFLHELPTAVALAAMALATFGVLILSLPPRGQMLSLSAWASRSALYGLACGACFAIATVGYRGGAVELARLGEISPWLSGAWGVLIAQLMQTLGLGAWIARTHAQGLRPIFRAWRVSLLAGGMGAAASLAWFTAYAMQGAAPVRTLGMVEVVFSYIVSRRVLSESLSRHEMIGMALMVLGLVLICLQG</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="79" xmlns="http://uniprot.org/uniprot">
    <accession>A9BNN8</accession>
    <name>A9BNN8_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="6">Binding-protein-dependent transport systems inner membrane component</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ordered locus">Daci_5304</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="7" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="4">Cell membrane</location>
            <topology evidence="4">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="4">Belongs to the binding-protein-dependent transport system permease family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX37933.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012207102.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_5304"/>
    <dbReference type="PRIDE" id="A9BNN8"/>
    <dbReference type="EnsemblBacteria" id="ABX37933">
        <property type="protein sequence ID" value="ABX37933"/>
        <property type="gene ID" value="Daci_5304"/>
    </dbReference>
    <dbReference type="GeneID" id="60689649"/>
    <dbReference type="KEGG" id="dac:Daci_5304"/>
    <dbReference type="eggNOG" id="COG0395">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_016047_1_1_4"/>
    <dbReference type="OMA" id="FPGRDWW"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
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        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
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        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
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        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd06261">
        <property type="entry name" value="TM_PBP2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.3720.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000515">
        <property type="entry name" value="MetI-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035906">
        <property type="entry name" value="MetI-like_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00528">
        <property type="entry name" value="BPD_transp_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF161098">
        <property type="entry name" value="SSF161098"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50928">
        <property type="entry name" value="ABC_TM1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3 4" id="KW-0472">Membrane</keyword>
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    <keyword evidence="4" id="KW-0813">Transport</keyword>
    <feature type="transmembrane region" description="Helical" evidence="4">
        <location>
            <begin position="20"/>
            <end position="42"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="4">
        <location>
            <begin position="77"/>
            <end position="101"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="4">
        <location>
            <begin position="113"/>
            <end position="134"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="4">
        <location>
            <begin position="146"/>
            <end position="163"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="4">
        <location>
            <begin position="200"/>
            <end position="221"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="4">
        <location>
            <begin position="247"/>
            <end position="268"/>
        </location>
    </feature>
    <feature type="domain" description="ABC transmembrane type-1" evidence="5">
        <location>
            <begin position="78"/>
            <end position="268"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="RuleBase" id="RU363032"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="PROSITE" id="PS50928"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="ABX37933.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="282" mass="31357" checksum="D783A2103EBB259A" modified="2008-01-15" version="1">MSAAPIAPRHAPPALYGATWLDTLAAWLLALLWILPLAYAFWTAFHPPEYSARFDLAAPWTLENFRRAWQAAPFARYFLNTAVLVVMILAAQLVLGTLAAYAFARYRFRGQGLAFALVLVQLMIMPDILLVANYQTLSRLGAVDTLLGIGLPYFASAFAIFLLRQTFLGIPRELDEAARVEGASTLQILWRVYVPLARPVYLAFALVSVSFHWNNFLWPLIITNSVQARPLTVGLQVFSSVESGVEWATITAATLMSSGPLLVAFVLFQRQFVQSFMRAGIK</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="67" xmlns="http://uniprot.org/uniprot">
    <accession>A9BNQ1</accession>
    <name>A9BNQ1_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Histidine kinase internal region</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Daci_5317</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="4" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX37946.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012207115.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_5317"/>
    <dbReference type="PRIDE" id="A9BNQ1"/>
    <dbReference type="EnsemblBacteria" id="ABX37946">
        <property type="protein sequence ID" value="ABX37946"/>
        <property type="gene ID" value="Daci_5317"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_5317"/>
    <dbReference type="eggNOG" id="COG2972">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_020473_1_1_4"/>
    <dbReference type="OMA" id="VFDACHV"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000155">
        <property type="term" value="F:phosphorelay sensor kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.565.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036890">
        <property type="entry name" value="HATPase_C_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010559">
        <property type="entry name" value="Sig_transdc_His_kin_internal"/>
    </dbReference>
    <dbReference type="Pfam" id="PF06580">
        <property type="entry name" value="His_kinase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55874">
        <property type="entry name" value="SSF55874"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-0418">Kinase</keyword>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0808">Transferase</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="27"/>
            <end position="45"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="57"/>
            <end position="78"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="90"/>
            <end position="113"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="119"/>
            <end position="139"/>
        </location>
    </feature>
    <feature type="domain" description="His_kinase" evidence="2">
        <location>
            <begin position="151"/>
            <end position="229"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF06580"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ABX37946.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="364" mass="38632" checksum="6AE2DF4D57D48D8C" modified="2008-01-15" version="1">MPPQPSTSAAPPPLPAALVFDACNVGVVLRAVLFVQAVAATAAMFGADSPLQWLENMALLTGASLPGTLVWLVAACLLKHPLQRLPSTGQYAAGVLLGMAAGLYACAMLQLAGGNSAPWLASAMSGGLLAALLVAALVLRARGHTPADTQARLAELQSRIRPHFLFNTLNSAIALVRAEPAKAEALLEDLSDLFRYALAEPHSTTTLAEEIELAQRYLAIEQVRFGERLQVRWQLDPAAHGALLPPLLLQPLVENAIRHGVEPSAHGGKLQVRTERRGDLVEVRITNTLPTEIDSASAAGTRGNGIALANVRARLSLLHDLQAHLTARTLKGHFVVRISLPLAAPASQPTKALSKKKHHAHPDR</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="82" xmlns="http://uniprot.org/uniprot">
    <accession>A9BNT5</accession>
    <name>A9BNT5_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="8">ABC transporter related</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="8" type="ordered locus">Daci_5351</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="9" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX37980.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_5351"/>
    <dbReference type="PRIDE" id="A9BNT5"/>
    <dbReference type="EnsemblBacteria" id="ABX37980">
        <property type="protein sequence ID" value="ABX37980"/>
        <property type="gene ID" value="Daci_5351"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_5351"/>
    <dbReference type="eggNOG" id="COG0410">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_000604_1_2_4"/>
    <dbReference type="OMA" id="NMYVADE"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015658">
        <property type="term" value="F:branched-chain amino acid transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003593">
        <property type="entry name" value="AAA+_ATPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR030660">
        <property type="entry name" value="ABC_branched_ATPase_LivF/BraG"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003439">
        <property type="entry name" value="ABC_transporter-like_ATP-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017871">
        <property type="entry name" value="ABC_transporter-like_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00005">
        <property type="entry name" value="ABC_tran"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF039137">
        <property type="entry name" value="ABC_branched_ATPase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00382">
        <property type="entry name" value="AAA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00211">
        <property type="entry name" value="ABC_TRANSPORTER_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50893">
        <property type="entry name" value="ABC_TRANSPORTER_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3 6" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="1" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="5" id="KW-0472">Membrane</keyword>
    <keyword evidence="2 6" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4" id="KW-1278">Translocase</keyword>
    <feature type="domain" description="ABC transporter" evidence="7">
        <location>
            <begin position="16"/>
            <end position="248"/>
        </location>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <begin position="48"/>
            <end position="55"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022967"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00434"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="PROSITE" id="PS50893"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="ABX37980.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="248" mass="26619" checksum="D51169E7298A099A" modified="2008-01-15" version="1">MGEQVQDKGVSAPVLLKVQGLKVAYGGIQAVKGVDFEVRQGELVSLIGSNGAGKTTTMKAVTRSLQMADGDVHYLGRSIRNVGAWDLVAQGLVMVPEGRGVFARMTITENLLMGAYTRNDKAGIAADIERMFGIFPRLKERRDQLAGTMSGGEQQMLAMARALMSQPKVLLLDEPSMGLSPIMVDKIFEVVRDVHALGVTLVLVEQNASRALALADRGYVMESGLITMTGPGQTLLSDPRVRAAYLGE</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="36" xmlns="http://uniprot.org/uniprot">
    <accession>A9BNV2</accession>
    <name>A9BNV2_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Daci_5368</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="2" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX37997.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="PRIDE" id="A9BNV2"/>
    <dbReference type="EnsemblBacteria" id="ABX37997">
        <property type="protein sequence ID" value="ABX37997"/>
        <property type="gene ID" value="Daci_5368"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_5368"/>
    <dbReference type="HOGENOM" id="CLU_127549_0_0_4"/>
    <dbReference type="OMA" id="SELFCRH"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ABX37997.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="181" mass="19988" checksum="E6846B7BBE88ED2E" modified="2008-01-15" version="1">MPAILPQCAVTQQIQIHGPQSTTDPPPSALLRCNKPRAVPVPMKAACLRLRAWNHRTQTMHNADTRSFELRHLAPGNDLHLHVLEGSELFCRHGPLEITAPQQAWADGVPAPAFRLQPGQGWRAGADLQIRVRSLSQAMASLELRQSPTAKSRIASEEGMRPRAWSVAGWLRGLRRGQRAA</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="70" xmlns="http://uniprot.org/uniprot">
    <accession>A9BNX0</accession>
    <name>A9BNX0_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="9">Na/Pi-cotransporter II-related protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="9" type="ordered locus">Daci_5386</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="9 10" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="10" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="2">Cell membrane</location>
            <topology evidence="2">Multi-pass membrane protein</topology>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX38015.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_5386"/>
    <dbReference type="PRIDE" id="A9BNX0"/>
    <dbReference type="EnsemblBacteria" id="ABX38015">
        <property type="protein sequence ID" value="ABX38015"/>
        <property type="gene ID" value="Daci_5386"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_5386"/>
    <dbReference type="eggNOG" id="COG1283">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_025623_2_1_4"/>
    <dbReference type="OMA" id="FCAVAYN"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005436">
        <property type="term" value="F:sodium:phosphate symporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0044341">
        <property type="term" value="P:sodium-dependent phosphate transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.58.220">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003841">
        <property type="entry name" value="Na/Pi_transpt"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004633">
        <property type="entry name" value="NaPi_cotrn-rel/YqeW-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038078">
        <property type="entry name" value="PhoU-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR026022">
        <property type="entry name" value="PhoU_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10010">
        <property type="entry name" value="PTHR10010"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02690">
        <property type="entry name" value="Na_Pi_cotrans"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01895">
        <property type="entry name" value="PhoU"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00704">
        <property type="entry name" value="NaPi_cotrn_rel"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="6 7" id="KW-0472">Membrane</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4 7" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="5 7" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="27"/>
            <end position="44"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="118"/>
            <end position="144"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="156"/>
            <end position="174"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="194"/>
            <end position="219"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="231"/>
            <end position="251"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="263"/>
            <end position="286"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="298"/>
            <end position="316"/>
        </location>
    </feature>
    <feature type="domain" description="PhoU" evidence="8">
        <location>
            <begin position="367"/>
            <end position="446"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00004651"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="Pfam" id="PF01895"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="ABX38015.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="577" mass="62643" checksum="6924A5C78EE9CD29" modified="2008-01-15" version="1"> </sequence>
</entry>
<entry dataset="Swiss-Prot" created="2009-07-28" modified="2022-08-03" version="75" xmlns="http://uniprot.org/uniprot">
    <accession>A9BP03</accession>
    <name>HRCA_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Heat-inducible transcription repressor HrcA</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="1" type="primary">hrcA</name>
        <name type="ordered locus">Daci_5419</name>
    </gene>
    <organism>
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference key="1">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain>DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="1">Negative regulator of class I heat shock genes (grpE-dnaK-dnaJ and groELS operons). Prevents heat-shock induction of these operons.</text>
    </comment>
    <comment type="similarity">
        <text evidence="1">Belongs to the HrcA family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX38048.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012207217.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A9BP03"/>
    <dbReference type="SMR" id="A9BP03"/>
    <dbReference type="STRING" id="398578.Daci_5419"/>
    <dbReference type="PRIDE" id="A9BP03"/>
    <dbReference type="EnsemblBacteria" id="ABX38048">
        <property type="protein sequence ID" value="ABX38048"/>
        <property type="gene ID" value="Daci_5419"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_5419"/>
    <dbReference type="eggNOG" id="COG1420">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_050019_0_0_4"/>
    <dbReference type="OMA" id="DYPGTMG"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0045892">
        <property type="term" value="P:negative regulation of transcription, DNA-templated"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.390.60">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.450.40">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00081">
        <property type="entry name" value="HrcA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029016">
        <property type="entry name" value="GAF-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002571">
        <property type="entry name" value="HrcA"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR021153">
        <property type="entry name" value="HrcA_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036390">
        <property type="entry name" value="WH_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005104">
        <property type="entry name" value="WHTH_HrcA_DNA-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023120">
        <property type="entry name" value="WHTH_transcript_rep_HrcA_IDD"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR34824">
        <property type="entry name" value="PTHR34824"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01628">
        <property type="entry name" value="HrcA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03444">
        <property type="entry name" value="HrcA_DNA-bdg"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF005485">
        <property type="entry name" value="HrcA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46785">
        <property type="entry name" value="SSF46785"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00331">
        <property type="entry name" value="hrcA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword id="KW-1185">Reference proteome</keyword>
    <keyword id="KW-0678">Repressor</keyword>
    <keyword id="KW-0346">Stress response</keyword>
    <keyword id="KW-0804">Transcription</keyword>
    <keyword id="KW-0805">Transcription regulation</keyword>
    <feature type="chain" id="PRO_1000118300" description="Heat-inducible transcription repressor HrcA">
        <location>
            <begin position="1"/>
            <end position="334"/>
        </location>
    </feature>
    <evidence type="ECO:0000255" key="1">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00081"/>
        </source>
    </evidence>
    <sequence length="334" mass="36814" checksum="07F552F2F5AEFBE2" modified="2008-01-15" version="1">MLDERAKLLLKALIERYIADGQPVGSRTLSRASGLELSPATIRNVMADLEDLGLIISPHTSAGRIPTARGYRLFVDTMLTADRADIVTPELVPEQPQKVIANAANLLSSLSQFVGVVLVPRRTSVFKHIEFVRLSERRFLVIIVSPDGDVQNRVIFTDVDYSSSQLIEASNFLNSHYAGLAMEEVRERLKGEVELLRGEVATLMQAAVNIGTEAMTSAQEDVVIAGERNLLSVSDFSSDMGNLRRAFDLFEQKTQILRLLDFSSQAEGVRIYIGGESQVVPFEELSVVSAPYELDGKVVGTLGVIGPTRMHYDRMIQIVDITSKLVSNALSHKR</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="77" xmlns="http://uniprot.org/uniprot">
    <accession>A9BP22</accession>
    <name>A9BP22_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="7">Binding-protein-dependent transport systems inner membrane component</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ordered locus">Daci_5438</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="8" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="4">Cell membrane</location>
            <topology evidence="4">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="4">Belongs to the binding-protein-dependent transport system permease family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX38067.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012207236.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_5438"/>
    <dbReference type="PRIDE" id="A9BP22"/>
    <dbReference type="EnsemblBacteria" id="ABX38067">
        <property type="protein sequence ID" value="ABX38067"/>
        <property type="gene ID" value="Daci_5438"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_5438"/>
    <dbReference type="eggNOG" id="COG1173">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_028518_1_1_4"/>
    <dbReference type="OMA" id="VPTYFRM"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0055085">
        <property type="term" value="P:transmembrane transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd06261">
        <property type="entry name" value="TM_PBP2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.3720.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000515">
        <property type="entry name" value="MetI-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035906">
        <property type="entry name" value="MetI-like_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00528">
        <property type="entry name" value="BPD_transp_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF161098">
        <property type="entry name" value="SSF161098"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50928">
        <property type="entry name" value="ABC_TM1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3 4" id="KW-0472">Membrane</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1 4" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="2 4" id="KW-1133">Transmembrane helix</keyword>
    <keyword evidence="4" id="KW-0813">Transport</keyword>
    <feature type="transmembrane region" description="Helical" evidence="4">
        <location>
            <begin position="43"/>
            <end position="63"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="4">
        <location>
            <begin position="107"/>
            <end position="135"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="4">
        <location>
            <begin position="147"/>
            <end position="176"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="4">
        <location>
            <begin position="220"/>
            <end position="245"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="4">
        <location>
            <begin position="266"/>
            <end position="291"/>
        </location>
    </feature>
    <feature type="domain" description="ABC transmembrane type-1" evidence="6">
        <location>
            <begin position="103"/>
            <end position="292"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="5">
        <location>
            <begin position="1"/>
            <end position="26"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Pro residues" evidence="5">
        <location>
            <begin position="1"/>
            <end position="17"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="RuleBase" id="RU363032"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="PROSITE" id="PS50928"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="ABX38067.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="307" mass="32237" checksum="5D9CA5131A5D2DD4" modified="2008-01-15" version="1">MSQPHSPPSPPPSTSPAGHRPTRAVTLGAPAGAGRRMLGHRSFLLGAVLTALLLLTALLSFWWTPGSAYDMDMDAKLAAPGALHWLGTDAYGRDVASLLFLGARSSILVGVIAVGIGLSMGVALGLVAAACRGWVEEAIMRLADFSFAFPALLSAIMLTAVFGAGIVNAIIAIGIFNIPTFARITRASAKAVWAREYVLAARACGHGRASITWRHVLPNILPVLVVQATIQFALAILAEAALSYLGLGTQPPQASWGRMLSEAQTLMFQAPLLAVWPGLAIALSVLGLNLLGDGLRDLLDPRLSRQR</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="58" xmlns="http://uniprot.org/uniprot">
    <accession>A9BPJ1</accession>
    <name>A9BPJ1_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">FAA_hydrolase domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_0212</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX32858.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012202151.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_0212"/>
    <dbReference type="PRIDE" id="A9BPJ1"/>
    <dbReference type="EnsemblBacteria" id="ABX32858">
        <property type="protein sequence ID" value="ABX32858"/>
        <property type="gene ID" value="Daci_0212"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_0212"/>
    <dbReference type="eggNOG" id="COG3971">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_060136_1_2_4"/>
    <dbReference type="OMA" id="NHCAAMG"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003824">
        <property type="term" value="F:catalytic activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.850.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011234">
        <property type="entry name" value="Fumarylacetoacetase-like_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036663">
        <property type="entry name" value="Fumarylacetoacetase_C_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01557">
        <property type="entry name" value="FAA_hydrolase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56529">
        <property type="entry name" value="SSF56529"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="FAA_hydrolase" evidence="1">
        <location>
            <begin position="72"/>
            <end position="270"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF01557"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX32858.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="272" mass="28752" checksum="AD96B1B8AD056885" modified="2008-01-15" version="1">MMNTPRTPTALAHALLQARHSGELLDADDWADVVRTPADAQAVQAAMAPALGWRVAGSQQGPGRVPGYWKSGAPRRDAPLTHAPLPEEGVWASPSVAGGAPLHLRGIEAEIALRLGRDVTAEMAAALQPGEGLELIDGITAAIEVVDTRWRQHLKAPPLLLAADGLCHGALVLGPWQDASRLLPRESPRDWSAQVCRLRVGAAPLQAFTGTHPLGDPLWLLAGWLQELVRRYGSVPAGTVVTTGTWNGLAFAQAGDLVVAELDGIAEARLQL</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="77" xmlns="http://uniprot.org/uniprot">
    <accession>A9BPK2</accession>
    <name>A9BPK2_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="6">Urea ABC transporter, ATP-binding protein UrtD</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ordered locus">Daci_0223</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="7" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX32869.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012202162.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_0223"/>
    <dbReference type="PRIDE" id="A9BPK2"/>
    <dbReference type="EnsemblBacteria" id="ABX32869">
        <property type="protein sequence ID" value="ABX32869"/>
        <property type="gene ID" value="Daci_0223"/>
    </dbReference>
    <dbReference type="GeneID" id="60690627"/>
    <dbReference type="KEGG" id="dac:Daci_0223"/>
    <dbReference type="eggNOG" id="COG4674">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_000604_1_2_4"/>
    <dbReference type="OMA" id="ICGKTKA"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003439">
        <property type="entry name" value="ABC_transporter-like_ATP-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017781">
        <property type="entry name" value="ABC_transptr_urea_ATP-bd_UrtD"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR032823">
        <property type="entry name" value="BCA_ABC_TP_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00005">
        <property type="entry name" value="ABC_tran"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12399">
        <property type="entry name" value="BCA_ABC_TP_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR03411">
        <property type="entry name" value="urea_trans_UrtD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50893">
        <property type="entry name" value="ABC_TRANSPORTER_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2 4 6" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="1 4" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-1278">Translocase</keyword>
    <feature type="domain" description="ABC transporter" evidence="5">
        <location>
            <begin position="8"/>
            <end position="247"/>
        </location>
    </feature>
    <feature type="binding site" evidence="4">
        <location>
            <begin position="40"/>
            <end position="47"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022967"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00434"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="PROSITE" id="PS50893"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="ABX32869.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="247" mass="27524" checksum="AB8F94FC601C6221" modified="2008-01-15" version="1">MSNTDFTLAVEDLTVSFDGFKAIDALNLYIDKNELRVIIGPNGAGKTTLLDLICGKTRATAGSIKFKNEELTRMAEHKRVRLGIGRKFQTPSIYENLSVFQNLEVSYPQGRSVFGALAFKCTEAVRDRVQAVAADIGLDERLDTEAGLLSHGQKQWLEIGMLLMQEPELLMLDEPIAGMSARERELTAELLQRICKNRSVIVIEHDMEFVARIAHKVTVMHQGKILAEGPMDKVQADPKVIDVYLGH</sequence>
</entry>
<entry dataset="Swiss-Prot" created="2009-04-14" modified="2022-08-03" version="89" xmlns="http://uniprot.org/uniprot">
    <accession>A9BPU5</accession>
    <name>ATPA_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">ATP synthase subunit alpha</fullName>
            <ecNumber evidence="1">7.1.2.2</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="1">ATP synthase F1 sector subunit alpha</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="1">F-ATPase subunit alpha</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="1" type="primary">atpA</name>
        <name type="ordered locus">Daci_0418</name>
    </gene>
    <organism>
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference key="1">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain>DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="1">Produces ATP from ADP in the presence of a proton gradient across the membrane. The alpha chain is a regulatory subunit.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>ATP + 4 H(+)(in) + H2O = ADP + 5 H(+)(out) + phosphate</text>
            <dbReference type="Rhea" id="RHEA:57720"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:43474"/>
            <dbReference type="ChEBI" id="CHEBI:456216"/>
            <dbReference type="EC" id="7.1.2.2"/>
        </reaction>
    </comment>
    <comment type="subunit">
        <text evidence="1">F-type ATPases have 2 components, CF(1) - the catalytic core - and CF(0) - the membrane proton channel. CF(1) has five subunits: alpha(3), beta(3), gamma(1), delta(1), epsilon(1). CF(0) has three main subunits: a(1), b(2) and c(9-12). The alpha and beta chains form an alternating ring which encloses part of the gamma chain. CF(1) is attached to CF(0) by a central stalk formed by the gamma and epsilon chains, while a peripheral stalk is formed by the delta and b chains.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Cell inner membrane</location>
            <topology evidence="1">Peripheral membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="1">Belongs to the ATPase alpha/beta chains family.</text>
    </comment>
    <dbReference type="EC" id="7.1.2.2" evidence="1"/>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX33064.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012202355.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A9BPU5"/>
    <dbReference type="SMR" id="A9BPU5"/>
    <dbReference type="STRING" id="398578.Daci_0418"/>
    <dbReference type="PRIDE" id="A9BPU5"/>
    <dbReference type="EnsemblBacteria" id="ABX33064">
        <property type="protein sequence ID" value="ABX33064"/>
        <property type="gene ID" value="Daci_0418"/>
    </dbReference>
    <dbReference type="GeneID" id="60690825"/>
    <dbReference type="KEGG" id="dac:Daci_0418"/>
    <dbReference type="eggNOG" id="COG0056">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_010091_2_1_4"/>
    <dbReference type="OMA" id="LQAPGVM"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0045261">
        <property type="term" value="C:proton-transporting ATP synthase complex, catalytic core F(1)"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046933">
        <property type="term" value="F:proton-transporting ATP synthase activity, rotational mechanism"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046961">
        <property type="term" value="F:proton-transporting ATPase activity, rotational mechanism"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="CDD" id="cd18113">
        <property type="entry name" value="ATP-synt_F1_alpha_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="CDD" id="cd01132">
        <property type="entry name" value="F1_ATPase_alpha"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.150.20">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.30.20">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01346">
        <property type="entry name" value="ATP_synth_alpha_bact"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023366">
        <property type="entry name" value="ATP_synth_asu-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000793">
        <property type="entry name" value="ATP_synth_asu_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038376">
        <property type="entry name" value="ATP_synth_asu_C_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR033732">
        <property type="entry name" value="ATP_synth_F1_a"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005294">
        <property type="entry name" value="ATP_synth_F1_asu"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020003">
        <property type="entry name" value="ATPase_a/bsu_AS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004100">
        <property type="entry name" value="ATPase_F1/V1/A1_a/bsu_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036121">
        <property type="entry name" value="ATPase_F1/V1/A1_a/bsu_N_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000194">
        <property type="entry name" value="ATPase_F1/V1/A1_a/bsu_nucl-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00006">
        <property type="entry name" value="ATP-synt_ab"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00306">
        <property type="entry name" value="ATP-synt_ab_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02874">
        <property type="entry name" value="ATP-synt_ab_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF039088">
        <property type="entry name" value="F_ATPase_subunit_alpha"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50615">
        <property type="entry name" value="SSF50615"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00962">
        <property type="entry name" value="atpA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00152">
        <property type="entry name" value="ATPASE_ALPHA_BETA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword id="KW-0066">ATP synthesis</keyword>
    <keyword id="KW-0067">ATP-binding</keyword>
    <keyword id="KW-0997">Cell inner membrane</keyword>
    <keyword id="KW-1003">Cell membrane</keyword>
    <keyword id="KW-0139">CF(1)</keyword>
    <keyword id="KW-0375">Hydrogen ion transport</keyword>
    <keyword id="KW-0406">Ion transport</keyword>
    <keyword id="KW-0472">Membrane</keyword>
    <keyword id="KW-0547">Nucleotide-binding</keyword>
    <keyword id="KW-1185">Reference proteome</keyword>
    <keyword id="KW-1278">Translocase</keyword>
    <keyword id="KW-0813">Transport</keyword>
    <feature type="chain" id="PRO_1000143365" description="ATP synthase subunit alpha">
        <location>
            <begin position="1"/>
            <end position="517"/>
        </location>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <begin position="174"/>
            <end position="181"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <feature type="site" description="Required for activity" evidence="1">
        <location>
            <position position="378"/>
        </location>
    </feature>
    <evidence type="ECO:0000255" key="1">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01346"/>
        </source>
    </evidence>
    <sequence length="517" mass="55068" checksum="0CD2E04EF074E08B" modified="2008-01-15" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="58" xmlns="http://uniprot.org/uniprot">
    <accession>A9BPZ0</accession>
    <name>A9BPZ0_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="8">Auxin Efflux Carrier</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="8" type="ordered locus">Daci_0559</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="9" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="2">Cell membrane</location>
            <topology evidence="2">Multi-pass membrane protein</topology>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="3">Belongs to the auxin efflux carrier (TC 2.A.69) family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX33205.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012202491.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_0559"/>
    <dbReference type="PRIDE" id="A9BPZ0"/>
    <dbReference type="EnsemblBacteria" id="ABX33205">
        <property type="protein sequence ID" value="ABX33205"/>
        <property type="gene ID" value="Daci_0559"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_0559"/>
    <dbReference type="eggNOG" id="COG0679">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_056175_2_1_4"/>
    <dbReference type="OMA" id="MLYRFGA"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0055085">
        <property type="term" value="P:transmembrane transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.1530.20">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004776">
        <property type="entry name" value="Mem_trans"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038770">
        <property type="entry name" value="Na+/solute_symporter_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03547">
        <property type="entry name" value="Mem_trans"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="6 7" id="KW-0472">Membrane</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4 7" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="5 7" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="30"/>
            <end position="51"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="63"/>
            <end position="83"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="95"/>
            <end position="118"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="125"/>
            <end position="148"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="195"/>
            <end position="215"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="235"/>
            <end position="257"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="263"/>
            <end position="281"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="293"/>
            <end position="315"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00004651"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00010145"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="ABX33205.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="316" mass="32557" checksum="AF5FFC744CDAB0C8" modified="2008-01-15" version="1">MLSVLLITFPFFALVACGFAATWRGVLPQAAIPGLNAFVLYFALPCMLFRFGAQTPIAQLLDVGVSVVYLLCALLMVGATVALTVRRVGWNDAAFGALVAAFPNTGFMGVPMLVALLGERAAGPVIVTMAIDMVVTTSLCIALSRLGLPGGHGVSVALRRAFAGMAANPMPWAIVLGGVASAAGWTLPGPIDRTVAMLAGAASPVALFTIGAVLARSQMNSHERVAARDYVPIALAKLLVHPLLVWAVARAAMALGLPLGEEAFVALVLLAALPSASNVSLLTERFGAHGGRVARIILVSTVLAFLSFSGAVALMT</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="62" xmlns="http://uniprot.org/uniprot">
    <accession>A9BQ25</accession>
    <name>A9BQ25_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="6">Lysine exporter protein (LYSE/YGGA)</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ordered locus">Daci_0594</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="7" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX33240.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012202526.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_0594"/>
    <dbReference type="PRIDE" id="A9BQ25"/>
    <dbReference type="EnsemblBacteria" id="ABX33240">
        <property type="protein sequence ID" value="ABX33240"/>
        <property type="gene ID" value="Daci_0594"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_0594"/>
    <dbReference type="eggNOG" id="COG1280">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_079569_1_0_4"/>
    <dbReference type="OMA" id="ASFTWVF"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006865">
        <property type="term" value="P:amino acid transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001123">
        <property type="entry name" value="LeuE-type"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30086">
        <property type="entry name" value="PTHR30086"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01810">
        <property type="entry name" value="LysE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="4 5" id="KW-0472">Membrane</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 5" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="3 5" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="41"/>
            <end position="63"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="70"/>
            <end position="88"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="108"/>
            <end position="134"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="146"/>
            <end position="169"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="181"/>
            <end position="199"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="ABX33240.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="200" mass="21440" checksum="70E39AFE1558D27D" modified="2008-01-15" version="1">MPPSELTALLLLAASMSFSPGPNTTLSTALAANHGLRPALRFVLAVPVGWCVLLVLSTAGVGAAIVAAPLLLWLVKAAGIGYLLWMAWRLSSSAQMASLQSPQQLQVGFWQGVGLQFLNIKAWLLALAIVAGWLAGRDDLTERLAVVLPVMAAYAFFSNLLYACVGALLRHWLAQGRRLLWFNRAMATMLALTAIWMVAA</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="72" xmlns="http://uniprot.org/uniprot">
    <accession>A9BQ47</accession>
    <name>A9BQ47_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Tetratricopeptide TPR_2 repeat protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Daci_0616</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="4" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX33262.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_0616"/>
    <dbReference type="CAZy" id="GT41">
        <property type="family name" value="Glycosyltransferase Family 41"/>
    </dbReference>
    <dbReference type="PRIDE" id="A9BQ47"/>
    <dbReference type="EnsemblBacteria" id="ABX33262">
        <property type="protein sequence ID" value="ABX33262"/>
        <property type="gene ID" value="Daci_0616"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_0616"/>
    <dbReference type="eggNOG" id="COG0457">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="eggNOG" id="COG3914">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_001721_4_0_4"/>
    <dbReference type="OMA" id="HAYSEKL"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.25.40.10">
        <property type="match status" value="3"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029489">
        <property type="entry name" value="OGT/SEC/SPY_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011990">
        <property type="entry name" value="TPR-like_helical_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019734">
        <property type="entry name" value="TPR_repeat"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13844">
        <property type="entry name" value="Glyco_transf_41"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13181">
        <property type="entry name" value="TPR_8"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00028">
        <property type="entry name" value="TPR"/>
        <property type="match status" value="9"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48452">
        <property type="entry name" value="SSF48452"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50005">
        <property type="entry name" value="TPR"/>
        <property type="match status" value="3"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0802">TPR repeat</keyword>
    <feature type="repeat" description="TPR" evidence="1">
        <location>
            <begin position="300"/>
            <end position="333"/>
        </location>
    </feature>
    <feature type="repeat" description="TPR" evidence="1">
        <location>
            <begin position="402"/>
            <end position="435"/>
        </location>
    </feature>
    <feature type="repeat" description="TPR" evidence="1">
        <location>
            <begin position="436"/>
            <end position="469"/>
        </location>
    </feature>
    <feature type="domain" description="Glyco_transf_41" evidence="2">
        <location>
            <begin position="585"/>
            <end position="740"/>
        </location>
    </feature>
    <feature type="domain" description="Glyco_transf_41" evidence="2">
        <location>
            <begin position="758"/>
            <end position="918"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00339"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF13844"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ABX33262.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="974" mass="108216" checksum="99AA0C87FA08D986" modified="2008-01-15" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="69" xmlns="http://uniprot.org/uniprot">
    <accession>A9BQA9</accession>
    <name>A9BQA9_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="3 4">Regulatory protein RecX</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="4" type="primary">recX</name>
        <name evidence="5" type="ordered locus">Daci_0873</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="6" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="4">Modulates RecA activity.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1 4">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2 4">Belongs to the RecX family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX33519.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012202805.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_0873"/>
    <dbReference type="PRIDE" id="A9BQA9"/>
    <dbReference type="EnsemblBacteria" id="ABX33519">
        <property type="protein sequence ID" value="ABX33519"/>
        <property type="gene ID" value="Daci_0873"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_0873"/>
    <dbReference type="eggNOG" id="COG2137">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_066607_3_1_4"/>
    <dbReference type="OMA" id="RCKMQEK"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006282">
        <property type="term" value="P:regulation of DNA repair"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="match status" value="3"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01114">
        <property type="entry name" value="RecX"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003783">
        <property type="entry name" value="Regulatory_RecX"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33602">
        <property type="entry name" value="PTHR33602"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02631">
        <property type="entry name" value="RecX"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004496"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00009695"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00018111"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01114"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="ABX33519.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="158" mass="17542" checksum="4A139D4AA4100D57" modified="2008-01-15" version="1">MGFAKLSLKGRALKLLGQREHSRLELERKLAPHVEEGEDLGAMLDALEQRGFISAQRVAESVLHQKAARFGTARVVQELRNKGLDDGLVRAAAEQLRATELQRALAVWRQRFGSPPTTPQERLKQMRFLAARGFGGEIASKVLRGRSEDWDAGAEDEG</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="80" xmlns="http://uniprot.org/uniprot">
    <accession>A9BQV0</accession>
    <name>A9BQV0_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Transcriptional regulator, LysR family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Daci_0259</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="4" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the LysR transcriptional regulatory family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX32905.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_0259"/>
    <dbReference type="PRIDE" id="A9BQV0"/>
    <dbReference type="EnsemblBacteria" id="ABX32905">
        <property type="protein sequence ID" value="ABX32905"/>
        <property type="gene ID" value="Daci_0259"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_0259"/>
    <dbReference type="eggNOG" id="COG0583">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_039613_16_2_4"/>
    <dbReference type="OMA" id="WHEHSVW"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003700">
        <property type="term" value="F:DNA-binding transcription factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005119">
        <property type="entry name" value="LysR_subst-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000847">
        <property type="entry name" value="Tscrpt_reg_HTH_LysR"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036390">
        <property type="entry name" value="WH_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00126">
        <property type="entry name" value="HTH_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03466">
        <property type="entry name" value="LysR_substrate"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46785">
        <property type="entry name" value="SSF46785"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50931">
        <property type="entry name" value="HTH_LYSR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HTH lysR-type" evidence="2">
        <location>
            <begin position="20"/>
            <end position="77"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00009437"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS50931"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ABX32905.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="330" mass="36044" checksum="78A7B7C5A07FDE52" modified="2008-01-15" version="1">MEQCSESPRAPRPGAKDNMDRLQTMRVFQTVADEAGFSAAARRLDMSVPTVTRLVADLEQHLGTRLLQRTTRSVSLTEAGEAYLERVRGILADVEDAFSLAQAHTLELSGAVRVLTPPVFAEHVLAPLVADFHRLHPRICIEVFVESASEAAVGEYDITFLNAEEGYDGNVVARPIVTTCGLACASPEYLDAHGVPAVPEDLAGHQCLLRRRAQGRSDVLRLRRLDGNAGEAEVAVQPVLVANHTGTLLRATLDGAGISTQPLDLIARHLRSGRLRHVLPEWTTGHFTLYATLPTRKFMPARVRSFLDFVAEHTQRSMQGLPANLPALSI</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="78" xmlns="http://uniprot.org/uniprot">
    <accession>A9BQY4</accession>
    <name>A9BQY4_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Aldehyde Dehydrogenase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ordered locus">Daci_0293</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="6" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="3">Belongs to the aldehyde dehydrogenase family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX32939.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012202232.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_0293"/>
    <dbReference type="PRIDE" id="A9BQY4"/>
    <dbReference type="EnsemblBacteria" id="ABX32939">
        <property type="protein sequence ID" value="ABX32939"/>
        <property type="gene ID" value="Daci_0293"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_0293"/>
    <dbReference type="eggNOG" id="COG1012">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_005391_1_0_4"/>
    <dbReference type="OMA" id="GDHTSYV"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016620">
        <property type="term" value="F:oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.309.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.605.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016161">
        <property type="entry name" value="Ald_DH/histidinol_DH"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016163">
        <property type="entry name" value="Ald_DH_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029510">
        <property type="entry name" value="Ald_DH_CS_GLU"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016162">
        <property type="entry name" value="Ald_DH_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015590">
        <property type="entry name" value="Aldehyde_DH_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00171">
        <property type="entry name" value="Aldedh"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53720">
        <property type="entry name" value="SSF53720"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00687">
        <property type="entry name" value="ALDEHYDE_DEHYDR_GLU"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="1 3" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Aldedh" evidence="4">
        <location>
            <begin position="20"/>
            <end position="472"/>
        </location>
    </feature>
    <feature type="active site" evidence="2">
        <location>
            <position position="248"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023002"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU10007"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="RuleBase" id="RU003345"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="Pfam" id="PF00171"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="ABX32939.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="477" mass="51224" checksum="FA7B4C808B498FFC" modified="2008-01-15" version="1">MASLPVLRNFIAGSFTDSAELHEVTNPATGAVLARSPLSSQADVDRAIAAARGAHKAWARRPAVERAQYLRRVAARIRDNAARIARTITEEQGKVLGLAEVEVNFTADYLDYMAEWARRIEGEVITSDRANEQIFLLRKPLGVVAGILPWNFPFFLIARKMAPALLTGNTIVIKPSEETPINCHAFTELLAQCELPAGVFNVVYGQGGTGAALAGHAGVDMVSFTGSVATGERIAAAAAPHITKLNLELGGKAPAIVLADADLDLAVRAIRDSRITNTGQVCNCAERVYVQRQVADEFTARIAQAMAATRYGDPIARPDVEMGPLINQKGLDSVQAKVRQAIADGAQLVTGGQAADLGAGFHFQPTVLAGCHAGMEIMRKEIFGPVLPIQVVEDLDEAIALANDCEYGLTSSLYTRDLSKAMQAMREIDFGETYINRENFEAMQGFHAGVRKSGVGGADGKHGLYEYTHTHVVYLQG</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="63" xmlns="http://uniprot.org/uniprot">
    <accession>A9BQZ8</accession>
    <name>A9BQZ8_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="3">ProQ activator of osmoprotectant transporter ProP</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Daci_0307</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="4" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX32953.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012202246.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_0307"/>
    <dbReference type="PRIDE" id="A9BQZ8"/>
    <dbReference type="EnsemblBacteria" id="ABX32953">
        <property type="protein sequence ID" value="ABX32953"/>
        <property type="gene ID" value="Daci_0307"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_0307"/>
    <dbReference type="eggNOG" id="COG3109">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_084154_0_0_4"/>
    <dbReference type="OMA" id="APEHVHH"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.1710.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016103">
        <property type="entry name" value="ProQ/FinO"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036442">
        <property type="entry name" value="ProQ/FinO_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04352">
        <property type="entry name" value="ProQ"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00945">
        <property type="entry name" value="ProQ"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48657">
        <property type="entry name" value="SSF48657"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="ProQ" evidence="2">
        <location>
            <begin position="86"/>
            <end position="196"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="87"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="11"/>
            <end position="25"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="SMART" id="SM00945"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ABX32953.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="288" mass="31169" checksum="3AEBD25D73402A47" modified="2008-01-15" version="1">MMRGFVFSKPTCSAMTESVSEPQEQSAALPADAAAGTEPQAAASADGQGRKRSRRGGRGRNKGKATEPAADAASGTAASAEANASRPVRTQHPLLAQLAQWHPNLFGEQPLPLKRGIFEDLLAAHPEAIDRDQLKLALSQHTRSSRYLTVVASGQARHDLQGQSVEAMAPEHVHHALIEVFRRRQHRSPEDLAPKLRNRIIAAYEASGLSRDDYAARVQGRDEATNALVAEALAEADARTARDEALLRAFEASGQTSEAGFADMYGMNPRQVAQQLERARRRLQTQAA</sequence>
</entry>
<entry dataset="Swiss-Prot" created="2009-04-14" modified="2022-08-03" version="85" xmlns="http://uniprot.org/uniprot">
    <accession>A9BR99</accession>
    <name>RPOC_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">DNA-directed RNA polymerase subunit beta'</fullName>
            <shortName evidence="1">RNAP subunit beta'</shortName>
            <ecNumber evidence="1">2.7.7.6</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="1">RNA polymerase subunit beta'</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="1">Transcriptase subunit beta'</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="1" type="primary">rpoC</name>
        <name type="ordered locus">Daci_0511</name>
    </gene>
    <organism>
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference key="1">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain>DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="1">DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>a ribonucleoside 5'-triphosphate + RNA(n) = diphosphate + RNA(n+1)</text>
            <dbReference type="Rhea" id="RHEA:21248"/>
            <dbReference type="Rhea" id="RHEA-COMP:14527"/>
            <dbReference type="Rhea" id="RHEA-COMP:17342"/>
            <dbReference type="ChEBI" id="CHEBI:33019"/>
            <dbReference type="ChEBI" id="CHEBI:61557"/>
            <dbReference type="ChEBI" id="CHEBI:140395"/>
            <dbReference type="EC" id="2.7.7.6"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </cofactor>
        <text evidence="1">Binds 1 Mg(2+) ion per subunit.</text>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </cofactor>
        <text evidence="1">Binds 2 Zn(2+) ions per subunit.</text>
    </comment>
    <comment type="subunit">
        <text evidence="1">The RNAP catalytic core consists of 2 alpha, 1 beta, 1 beta' and 1 omega subunit. When a sigma factor is associated with the core the holoenzyme is formed, which can initiate transcription.</text>
    </comment>
    <comment type="similarity">
        <text evidence="1">Belongs to the RNA polymerase beta' chain family.</text>
    </comment>
    <dbReference type="EC" id="2.7.7.6" evidence="1"/>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX33157.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012202443.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A9BR99"/>
    <dbReference type="SMR" id="A9BR99"/>
    <dbReference type="STRING" id="398578.Daci_0511"/>
    <dbReference type="PRIDE" id="A9BR99"/>
    <dbReference type="EnsemblBacteria" id="ABX33157">
        <property type="protein sequence ID" value="ABX33157"/>
        <property type="gene ID" value="Daci_0511"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_0511"/>
    <dbReference type="eggNOG" id="COG0086">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_000524_3_1_4"/>
    <dbReference type="OMA" id="YRNIRVE"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000428">
        <property type="term" value="C:DNA-directed RNA polymerase complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003899">
        <property type="term" value="F:DNA-directed 5'-3' RNA polymerase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000287">
        <property type="term" value="F:magnesium ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008270">
        <property type="term" value="F:zinc ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006351">
        <property type="term" value="P:transcription, DNA-templated"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.132.30">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.274.100">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="4.10.860.120">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01322">
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</entry>
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                <person name="Lowry S."/>
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                <person name="Kim E."/>
                <person name="Schleheck D."/>
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        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
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        </source>
    </reference>
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</entry>
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        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
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        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
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        </source>
    </reference>
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            <end position="255"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
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        </source>
    </evidence>
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        <source>
            <dbReference type="EMBL" id="ABX33307.1"/>
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    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
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    </evidence>
    <sequence length="255" mass="28838" checksum="4B6B3E5DE097DDE3" modified="2008-01-15" version="1">MCQLLGMNCNTPTDVRFSFSGFTQRAGNTGDHTDGWGIAFFEDKGLRHFVGYERAIDSPIAKLIREYPIKSRNVIAHIRKATQGAVSLQNCHPFVRELWGRNWVFAHNGDLKGFAPKLHAHFHPVGNTDSEQAFCWILQELWKSHAGLPSVQELTHTLRELARRISPHGTFNFLLSNGEALWAHATTHLCYIERRHPFAQAHLSDEDLTVDFARETTPQDRVAIIVTAPLTKNETWTSIQSGELKVFVQGECLPL</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="66" xmlns="http://uniprot.org/uniprot">
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        </recommendedName>
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    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
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            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="5" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
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            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX33367.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_0721"/>
    <dbReference type="PRIDE" id="A9BRK6"/>
    <dbReference type="EnsemblBacteria" id="ABX33367">
        <property type="protein sequence ID" value="ABX33367"/>
        <property type="gene ID" value="Daci_0721"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_0721"/>
    <dbReference type="eggNOG" id="COG2967">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_128074_1_0_4"/>
    <dbReference type="OMA" id="YVSGCNL"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.40.1470">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00791">
        <property type="entry name" value="ApaG"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007474">
        <property type="entry name" value="ApaG_domain"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036767">
        <property type="entry name" value="ApaG_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023065">
        <property type="entry name" value="Uncharacterised_ApaG"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04379">
        <property type="entry name" value="DUF525"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF110069">
        <property type="entry name" value="SSF110069"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51087">
        <property type="entry name" value="APAG"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="ApaG" evidence="3">
        <location>
            <begin position="21"/>
            <end position="145"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00017693"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00791"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="PROSITE" id="PS51087"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="ABX33367.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="156" mass="16782" checksum="D0880F5AB4763741" modified="2008-01-15" version="1">MGGGAWGRSQAGTLRAVTIAAMPMNEFQVQVRPAFLPEQSAPAAGVYAFSYTITVTNTGQVPGQLIARHWIITNELGHVEEVKGLGVIGRQPLLQPGETFEYTSGCQLRTPNGSMQGSYLCISHEGEVFECPIPRFHLQSGAGGDSFPDPDNRVLH</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="52" xmlns="http://uniprot.org/uniprot">
    <accession>A9BRL0</accession>
    <name>A9BRL0_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Sel1 domain protein repeat-containing protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Daci_0725</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="2" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX33371.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012202657.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="PRIDE" id="A9BRL0"/>
    <dbReference type="EnsemblBacteria" id="ABX33371">
        <property type="protein sequence ID" value="ABX33371"/>
        <property type="gene ID" value="Daci_0725"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_0725"/>
    <dbReference type="eggNOG" id="ENOG5033Q77">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_533940_0_0_4"/>
    <dbReference type="OMA" id="HIEPMEQ"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.25.40.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011990">
        <property type="entry name" value="TPR-like_helical_dom_sf"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ABX33371.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="511" mass="55248" checksum="AA00F5E73D494AD6" modified="2008-01-15" version="1">MRREDVKLRMLARRGDTGARLQLGEAYLTGGPGVSRSIPVGLEYLQAALPQARRQASVCIALHLPLRELLEHGLLETLRIAAEYEDVGRQKLAAWHLIRGELDLALECLGKCSAALPSHLASSVSAHTSGELLQALQILRAIQPLDIAEVMACEARQAMAMGQSHRAVRMLELLRDLPHAAHGPVMQQLIADLVHQAEVAGHGLGRLTVGCIEASLDRCAANGDVRACHVLGRALSGLPCAHLAPETLVNAQNLRKAAALLLRAADGGIVTAWLHLFRICSDYRSSVANPTLARFCLEKAARHGLPEAERRLGALVLRDATHIEPMEQGVALLHAAAAKGDVLAGLLLRSLLLPVGGDNEQEALAAIEAVQPDAPLLAMRLRLARVFGLTKLEALSVNPSTAMRPWGLVVGHNRLVAKARLCEPRAVPATTPDALRCLEQAASMFSAQHGESLAPEGSLRARSLQMRRLFHRLQISETVFFASASSQQRDAIRVGTKWARRQQQILRQVLA</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="94" xmlns="http://uniprot.org/uniprot">
    <accession>A9BRP4</accession>
    <name>A9BRP4_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="7">Ferredoxin</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ordered locus">Daci_0965</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="8" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX33611.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012202897.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_0965"/>
    <dbReference type="PRIDE" id="A9BRP4"/>
    <dbReference type="EnsemblBacteria" id="ABX33611">
        <property type="protein sequence ID" value="ABX33611"/>
        <property type="gene ID" value="Daci_0965"/>
    </dbReference>
    <dbReference type="GeneID" id="60685529"/>
    <dbReference type="KEGG" id="dac:Daci_0965"/>
    <dbReference type="eggNOG" id="COG1018">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_003827_17_0_4"/>
    <dbReference type="OMA" id="VACESSC"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051537">
        <property type="term" value="F:2 iron, 2 sulfur cluster binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016491">
        <property type="term" value="F:oxidoreductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd00207">
        <property type="entry name" value="fer2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.10.20.30">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.80">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036010">
        <property type="entry name" value="2Fe-2S_ferredoxin-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001041">
        <property type="entry name" value="2Fe-2S_ferredoxin-type"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012675">
        <property type="entry name" value="Beta-grasp_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017927">
        <property type="entry name" value="FAD-bd_FR_type"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR039261">
        <property type="entry name" value="FNR_nucleotide-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000951">
        <property type="entry name" value="Ph_dOase_redase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017938">
        <property type="entry name" value="Riboflavin_synthase-like_b-brl"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00111">
        <property type="entry name" value="Fer2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00409">
        <property type="entry name" value="PHDIOXRDTASE"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52343">
        <property type="entry name" value="SSF52343"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54292">
        <property type="entry name" value="SSF54292"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF63380">
        <property type="entry name" value="SSF63380"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51085">
        <property type="entry name" value="2FE2S_FER_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51384">
        <property type="entry name" value="FAD_FR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0001">2Fe-2S</keyword>
    <keyword evidence="3" id="KW-0408">Iron</keyword>
    <keyword evidence="4" id="KW-0411">Iron-sulfur</keyword>
    <keyword evidence="2" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="FAD-binding FR-type" evidence="6">
        <location>
            <begin position="2"/>
            <end position="104"/>
        </location>
    </feature>
    <feature type="domain" description="2Fe-2S ferredoxin-type" evidence="5">
        <location>
            <begin position="234"/>
            <end position="319"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022714"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023004"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023014"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="PROSITE" id="PS51085"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="PROSITE" id="PS51384"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="ABX33611.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="319" mass="34920" checksum="3260570B2F757B00" modified="2008-01-15" version="1">MSTNLQAFVHTLRFEAQDTISVDLRPVAGGELPAFTPGSHIDLHLPNGLVRSYSLSNPSEERHRYVVGVLRDRASRGGSRCVHESLRVGMPITISEPRNHFALDESAAHTVLVAGGIGITPLLCMARRLKGQGRSFEMLYFARERKGAAFLEELQALGMPLHLHFDSEAGGPPDLRALLAQRQPDAGTHHYACGPTPMLDAFEKFCAELGHANAHVERFTPVEVKAADDARSNYTVELKRSGRFIEITPEKSLLDTLLDAGIQMDHSCCEGVCGSCETRVLEGIPDHRDSVLSPKEKASNKVMMVCVSGCKSERLVLDI</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="62" xmlns="http://uniprot.org/uniprot">
    <accession>A9BRQ1</accession>
    <name>A9BRQ1_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Endoribonuclease L-PSP</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Daci_0972</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="4" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the RutC family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX33618.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012202904.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_0972"/>
    <dbReference type="PRIDE" id="A9BRQ1"/>
    <dbReference type="EnsemblBacteria" id="ABX33618">
        <property type="protein sequence ID" value="ABX33618"/>
        <property type="gene ID" value="Daci_0972"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_0972"/>
    <dbReference type="eggNOG" id="COG0251">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_100715_7_4_4"/>
    <dbReference type="OMA" id="PELHHGY"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.1330.40">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019897">
        <property type="entry name" value="RidA_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035959">
        <property type="entry name" value="RutC-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006175">
        <property type="entry name" value="YjgF/YER057c/UK114"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11803">
        <property type="entry name" value="PTHR11803"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01042">
        <property type="entry name" value="Ribonuc_L-PSP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55298">
        <property type="entry name" value="SSF55298"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01094">
        <property type="entry name" value="UPF0076"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="1"/>
            <end position="22"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00010552"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ABX33618.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="131" mass="13869" checksum="2A4FB0927FA1F28A" modified="2008-01-15" version="1">MAGENGIDLRHASPNLPAPGGHYSHTATGQGLVFVSGQLPIRPDGTRLVDAGFEDQARQALANLAAALELAGSGVPRLLQVRVYLDDMAHWPAFDRIYADWAGTHRPARAVVPTGALHFGLKVEIEAVALA</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="90" xmlns="http://uniprot.org/uniprot">
    <accession>A9BRY2</accession>
    <name>A9BRY2_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="6">Two component transcriptional regulator, winged helix family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ordered locus">Daci_0746</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="7" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX33392.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_0746"/>
    <dbReference type="PRIDE" id="A9BRY2"/>
    <dbReference type="EnsemblBacteria" id="ABX33392">
        <property type="protein sequence ID" value="ABX33392"/>
        <property type="gene ID" value="Daci_0746"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_0746"/>
    <dbReference type="eggNOG" id="COG0745">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_000445_30_1_4"/>
    <dbReference type="OMA" id="LMLTARC"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000160">
        <property type="term" value="P:phosphorelay signal transduction system"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006355">
        <property type="term" value="P:regulation of transcription, DNA-templated"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd00383">
        <property type="entry name" value="trans_reg_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011006">
        <property type="entry name" value="CheY-like_superfamily"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001867">
        <property type="entry name" value="OmpR/PhoB-type_DNA-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016032">
        <property type="entry name" value="Sig_transdc_resp-reg_C-effctor"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001789">
        <property type="entry name" value="Sig_transdc_resp-reg_receiver"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR039420">
        <property type="entry name" value="WalR-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR48111">
        <property type="entry name" value="PTHR48111"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00072">
        <property type="entry name" value="Response_reg"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00486">
        <property type="entry name" value="Trans_reg_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00448">
        <property type="entry name" value="REC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00862">
        <property type="entry name" value="Trans_reg_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46894">
        <property type="entry name" value="SSF46894"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52172">
        <property type="entry name" value="SSF52172"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51755">
        <property type="entry name" value="OMPR_PHOB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50110">
        <property type="entry name" value="RESPONSE_REGULATORY"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1 3" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="2" id="KW-0597">Phosphoprotein</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Response regulatory" evidence="4">
        <location>
            <begin position="31"/>
            <end position="145"/>
        </location>
    </feature>
    <feature type="domain" description="OmpR/PhoB-type" evidence="5">
        <location>
            <begin position="153"/>
            <end position="251"/>
        </location>
    </feature>
    <feature type="DNA-binding region" description="OmpR/PhoB-type" evidence="3">
        <location>
            <begin position="153"/>
            <end position="251"/>
        </location>
    </feature>
    <feature type="modified residue" description="4-aspartylphosphate" evidence="2">
        <location>
            <position position="80"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00169"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU01091"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="PROSITE" id="PS50110"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="PROSITE" id="PS51755"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="ABX33392.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="256" mass="27477" checksum="36807B63A0AFE469" modified="2008-01-15" version="1">MCWSSPWRRSASPGSGSICCPCAATTETMNRIALIEDHARLATLVSRSLANSGIETDVFHQISTAWLALQDIDYGVIVIDRGLPDGDGLQLVQRLRAAGRSTPCLMLTARDALSDRVGGLEAGADDYLTKPFPMEELIARVRALLRRPALVQELAPQLGDISISPQQACMHCAGSAIALPPAELQIMLSLVRKAGATVRRSTLEAAAWGMSSVVTPNALDVALHRLRRKLAAAGSCMEIVNIRGQGYALREPLLAR</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="53" xmlns="http://uniprot.org/uniprot">
    <accession>A9BS26</accession>
    <name>A9BS26_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ordered locus">Daci_0790</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="5" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Periplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the UPF0065 (bug) family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX33436.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012202722.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_0790"/>
    <dbReference type="PRIDE" id="A9BS26"/>
    <dbReference type="EnsemblBacteria" id="ABX33436">
        <property type="protein sequence ID" value="ABX33436"/>
        <property type="gene ID" value="Daci_0790"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_0790"/>
    <dbReference type="eggNOG" id="COG3181">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_045683_0_0_4"/>
    <dbReference type="OMA" id="HMLMELM"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0042597">
        <property type="term" value="C:periplasmic space"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.190.150">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005064">
        <property type="entry name" value="BUG"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR042100">
        <property type="entry name" value="Bug_dom1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR42928">
        <property type="entry name" value="PTHR42928"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03401">
        <property type="entry name" value="TctC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF017082">
        <property type="entry name" value="YflP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="3">
        <location>
            <begin position="1"/>
            <end position="25"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5002735982" evidence="3">
        <location>
            <begin position="26"/>
            <end position="328"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004418"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00006987"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="ABX33436.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="328" mass="34204" checksum="43124F317D9F07B0" modified="2008-01-15" version="1">MNHFTSRRSLCALLLAAGAAPGAMAADAGAYPTRPVRLIVPFAAGGTTDIVARAIAPRMAEALGQPLVVDNKGGGGGAIGAHEAARAQPDGYTLGVATVSTTATNPAINPRLPYNPLTDFTPITNIAATPNVLAVHPGFKAQSFAAFVDEVKKNPGKHAYGTAGTGSIGHMLMELMSSRSGLSLTHVPYRGSGPALNDAVAGQVPIVFDNLPSALPFIKAGRLTALAVAAPERLAQLPQVPTFKELGLEPVNRSAFYGIYGPKGLSPEIVARLHAAAQRALASPEVRRQIEDTGSRVIGNRPEEFAREIAAENALYRKIATERRIVAD</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="65" xmlns="http://uniprot.org/uniprot">
    <accession>A9BSW9</accession>
    <name>A9BSW9_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Putative transcriptional regulator</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_1686</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX34329.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012203614.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_1686"/>
    <dbReference type="PRIDE" id="A9BSW9"/>
    <dbReference type="EnsemblBacteria" id="ABX34329">
        <property type="protein sequence ID" value="ABX34329"/>
        <property type="gene ID" value="Daci_1686"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_1686"/>
    <dbReference type="eggNOG" id="COG3636">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_137365_1_1_4"/>
    <dbReference type="OMA" id="GAHPRYE"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd00093">
        <property type="entry name" value="HTH_XRE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.260.40">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001387">
        <property type="entry name" value="Cro/C1-type_HTH"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014057">
        <property type="entry name" value="HI1420"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010982">
        <property type="entry name" value="Lambda_DNA-bd_dom_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR40275">
        <property type="entry name" value="PTHR40275"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01381">
        <property type="entry name" value="HTH_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47413">
        <property type="entry name" value="SSF47413"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR02684">
        <property type="entry name" value="dnstrm_HI1420"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50943">
        <property type="entry name" value="HTH_CROC1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HTH cro/C1-type" evidence="1">
        <location>
            <begin position="50"/>
            <end position="93"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS50943"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX34329.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="98" mass="10768" checksum="D2ABDD41E2E4A320" modified="2008-01-15" version="1">MSNIKMRPFDMANYLGTEEEIVEYLRQALEDNDPAELAAALGDIARARGMTQLARDTGLSRESLYKSLSGERAPSSETLFKVIQAMGFRLTIAPAASQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="51" xmlns="http://uniprot.org/uniprot">
    <accession>A9BT10</accession>
    <name>A9BT10_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Putative TIS1421-transposase orfA protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_1727</name>
        <name evidence="3" type="ordered locus">Daci_2048</name>
        <name evidence="4" type="ordered locus">Daci_2523</name>
        <name evidence="5" type="ordered locus">Daci_3095</name>
        <name evidence="6" type="ordered locus">Daci_3623</name>
        <name evidence="7" type="ordered locus">Daci_3630</name>
        <name evidence="8" type="ordered locus">Daci_3723</name>
        <name evidence="9" type="ordered locus">Daci_4478</name>
    </gene>
    <organism evidence="2 10">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 10" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10">DSM 14801 / SPH-1</strain>
            <strain evidence="2">SPH-1</strain>
        </source>
    </reference>
    <reference evidence="10" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="2" key="3">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX34370.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX34688.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX35161.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX35733.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX36257.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX36262.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX36355.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX37108.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_1727"/>
    <dbReference type="PRIDE" id="A9BT10"/>
    <dbReference type="EnsemblBacteria" id="ABX34370">
        <property type="protein sequence ID" value="ABX34370"/>
        <property type="gene ID" value="Daci_1727"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="ABX34688">
        <property type="protein sequence ID" value="ABX34688"/>
        <property type="gene ID" value="Daci_2048"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="ABX35161">
        <property type="protein sequence ID" value="ABX35161"/>
        <property type="gene ID" value="Daci_2523"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="ABX35733">
        <property type="protein sequence ID" value="ABX35733"/>
        <property type="gene ID" value="Daci_3095"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="ABX36257">
        <property type="protein sequence ID" value="ABX36257"/>
        <property type="gene ID" value="Daci_3623"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="ABX36262">
        <property type="protein sequence ID" value="ABX36262"/>
        <property type="gene ID" value="Daci_3630"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="ABX36355">
        <property type="protein sequence ID" value="ABX36355"/>
        <property type="gene ID" value="Daci_3723"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="ABX37108">
        <property type="protein sequence ID" value="ABX37108"/>
        <property type="gene ID" value="Daci_4478"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_1727"/>
    <dbReference type="KEGG" id="dac:Daci_2048"/>
    <dbReference type="KEGG" id="dac:Daci_2523"/>
    <dbReference type="KEGG" id="dac:Daci_3095"/>
    <dbReference type="KEGG" id="dac:Daci_3623"/>
    <dbReference type="KEGG" id="dac:Daci_3630"/>
    <dbReference type="KEGG" id="dac:Daci_3723"/>
    <dbReference type="KEGG" id="dac:Daci_4478"/>
    <dbReference type="eggNOG" id="COG3293">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_055261_4_2_4"/>
    <dbReference type="OMA" id="SNELWKA"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025161">
        <property type="entry name" value="Put_IS4/IS5"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13340">
        <property type="entry name" value="DUF4096"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="107"/>
            <end position="141"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="127"/>
            <end position="141"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX34370.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ABX34688.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="ABX35161.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="ABX35733.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="ABX36257.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="ABX36262.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="ABX36355.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="ABX37108.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="141" mass="15491" checksum="B1BA9B91A8313C79" modified="2008-01-15" version="1">MLAALMARRPVSKELWRQLQPLIPAFVPSAKGGARKLAVSDEAALNGILFVLQTGIPWEDLPQSLGYGSGMTCWRRLRDWNAAGVWEQLHQAMLTRLREHDQIDWSRASIDGSSVPSPRGARKRAQTPRTEASSAPSGTSS</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-01-19" version="39" xmlns="http://uniprot.org/uniprot">
    <accession>A9BT13</accession>
    <name>A9BT13_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="7">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ordered locus">Daci_1730</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="8" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the chromate ion transporter (CHR) (TC 2.A.51) family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX34373.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_1730"/>
    <dbReference type="EnsemblBacteria" id="ABX34373">
        <property type="protein sequence ID" value="ABX34373"/>
        <property type="gene ID" value="Daci_1730"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_1730"/>
    <dbReference type="eggNOG" id="COG2059">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_1966948_0_0_4"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015109">
        <property type="term" value="F:chromate transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003370">
        <property type="entry name" value="Chromate_transpt"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02417">
        <property type="entry name" value="Chromate_transp"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="6" id="KW-0472">Membrane</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="5" id="KW-1133">Transmembrane helix</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00005262"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="ABX34373.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="127" mass="14661" checksum="13C875692D348DE8" modified="2008-01-15" version="1">MTAAAHQPRAPCFRRSLTPPPFGRGHKLKCSGAPSAQSHYARALSGEDWLHQRWRSCWPDFHMQEELVGCRRWISKKRFLHALNYSMLLTGPDAHQLEIYIGWLLHRTWGVILAGAHWKHRVSTVAK</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="88" xmlns="http://uniprot.org/uniprot">
    <accession>A9BT80</accession>
    <name>A9BT80_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Transcriptional regulator, AraC family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ordered locus">Daci_2005</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="6" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX34645.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012203930.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_2005"/>
    <dbReference type="PRIDE" id="A9BT80"/>
    <dbReference type="EnsemblBacteria" id="ABX34645">
        <property type="protein sequence ID" value="ABX34645"/>
        <property type="gene ID" value="Daci_2005"/>
    </dbReference>
    <dbReference type="GeneID" id="60686407"/>
    <dbReference type="KEGG" id="dac:Daci_2005"/>
    <dbReference type="eggNOG" id="COG2207">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_047522_1_2_4"/>
    <dbReference type="OMA" id="ARYSDCD"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003700">
        <property type="term" value="F:DNA-binding transcription factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043565">
        <property type="term" value="F:sequence-specific DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR032687">
        <property type="entry name" value="AraC-type_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009057">
        <property type="entry name" value="Homeobox-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018060">
        <property type="entry name" value="HTH_AraC"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12625">
        <property type="entry name" value="Arabinose_bd"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12833">
        <property type="entry name" value="HTH_18"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00342">
        <property type="entry name" value="HTH_ARAC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46689">
        <property type="entry name" value="SSF46689"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01124">
        <property type="entry name" value="HTH_ARAC_FAMILY_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0804">Transcription</keyword>
    <keyword evidence="1" id="KW-0805">Transcription regulation</keyword>
    <feature type="domain" description="HTH araC/xylS-type" evidence="4">
        <location>
            <begin position="230"/>
            <end position="328"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023015"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023163"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="PROSITE" id="PS01124"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="ABX34645.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="335" mass="37181" checksum="457B921A5976EB4D" modified="2008-01-15" version="1">MVTMVRAAALTHFSDVMRELGGDPDKALRQAGLRPALLREQDQLIDVAIVARLLEDAAQSTGCESLGLRMARHRQLSSFGAVSLLLLHQPTLRHALDTLVAHMHLVNESLLIHLEDAGDIVILREDFVLHGAMRQSVELAMGVLWRMCEALLRERWRPQGVSFSHAPPADLSEHRRMFRCRITFGAEFNGIACRAADLDEPNPLADPALARYALRLVEAMPAHRAASVGHQARRVIYLLLPSGNATCAGVAQGMGRSLRTLQRELDREGLSFSELLTEVRHELALRYLDHPHYSVGQIASMLGYASHSAFTRWFAAQFGCAPEAWRSRAQGLPRA</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="85" xmlns="http://uniprot.org/uniprot">
    <accession>A9BTE1</accession>
    <name>A9BTE1_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="5 14">Undecaprenyl-diphosphatase</fullName>
            <ecNumber evidence="4 14">3.6.1.27</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="13 14">Bacitracin resistance protein</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="12 14">Undecaprenyl pyrophosphate phosphatase</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="14" type="primary">uppP</name>
        <name evidence="15" type="ordered locus">Daci_2269</name>
    </gene>
    <organism evidence="15 16">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="15 16" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="16">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="16" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="16">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="14">Catalyzes the dephosphorylation of undecaprenyl diphosphate (UPP). Confers resistance to bacitracin.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1 14">
            <text>di-trans,octa-cis-undecaprenyl diphosphate + H2O = di-trans,octa-cis-undecaprenyl phosphate + H(+) + phosphate</text>
            <dbReference type="Rhea" id="RHEA:28094"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:43474"/>
            <dbReference type="ChEBI" id="CHEBI:58405"/>
            <dbReference type="ChEBI" id="CHEBI:60392"/>
            <dbReference type="EC" id="3.6.1.27"/>
        </reaction>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="14">Cell inner membrane</location>
            <topology evidence="14">Multi-pass membrane protein</topology>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="2">Membrane</location>
            <topology evidence="2">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="miscellaneous">
        <text evidence="14">Bacitracin is thought to be involved in the inhibition of peptidoglycan synthesis by sequestering undecaprenyl diphosphate, thereby reducing the pool of lipid carrier available.</text>
    </comment>
    <comment type="similarity">
        <text evidence="3 14">Belongs to the UppP family.</text>
    </comment>
    <dbReference type="EC" id="3.6.1.27" evidence="4 14"/>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX34909.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012204192.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_2269"/>
    <dbReference type="PRIDE" id="A9BTE1"/>
    <dbReference type="EnsemblBacteria" id="ABX34909">
        <property type="protein sequence ID" value="ABX34909"/>
        <property type="gene ID" value="Daci_2269"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_2269"/>
    <dbReference type="eggNOG" id="COG1968">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_060296_2_0_4"/>
    <dbReference type="OMA" id="IEGPFRD"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016301">
        <property type="term" value="F:kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0050380">
        <property type="term" value="F:undecaprenyl-diphosphatase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0071555">
        <property type="term" value="P:cell wall organization"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016311">
        <property type="term" value="P:dephosphorylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009252">
        <property type="term" value="P:peptidoglycan biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016310">
        <property type="term" value="P:phosphorylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008360">
        <property type="term" value="P:regulation of cell shape"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046677">
        <property type="term" value="P:response to antibiotic"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01006">
        <property type="entry name" value="Undec_diphosphatase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003824">
        <property type="entry name" value="UppP"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30622">
        <property type="entry name" value="PTHR30622"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02673">
        <property type="entry name" value="BacA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00753">
        <property type="entry name" value="undec_PP_bacA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="11 14" id="KW-0046">Antibiotic resistance</keyword>
    <keyword evidence="14" id="KW-0997">Cell inner membrane</keyword>
    <keyword evidence="6 14" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="14" id="KW-0133">Cell shape</keyword>
    <keyword evidence="14" id="KW-0961">Cell wall biogenesis/degradation</keyword>
    <keyword evidence="8 14 15" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="15" id="KW-0418">Kinase</keyword>
    <keyword evidence="10 14" id="KW-0472">Membrane</keyword>
    <keyword evidence="14" id="KW-0573">Peptidoglycan synthesis</keyword>
    <keyword evidence="16" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="15" id="KW-0808">Transferase</keyword>
    <keyword evidence="7 14" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="9 14" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="14">
        <location>
            <begin position="46"/>
            <end position="64"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="14">
        <location>
            <begin position="85"/>
            <end position="104"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="14">
        <location>
            <begin position="110"/>
            <end position="129"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="14">
        <location>
            <begin position="188"/>
            <end position="206"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="14">
        <location>
            <begin position="218"/>
            <end position="239"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="14">
        <location>
            <begin position="251"/>
            <end position="272"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00000759"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00010621"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00012374"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00021581"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="ARBA" id="ARBA00023251"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="12">
        <source>
            <dbReference type="ARBA" id="ARBA00032707"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="13">
        <source>
            <dbReference type="ARBA" id="ARBA00032932"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="14">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01006"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="15">
        <source>
            <dbReference type="EMBL" id="ABX34909.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="16">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="275" mass="29696" checksum="3650E567339F890A" modified="2008-01-15" version="1">MDILLLVKAAIMGIVEGLTEFLPISSTGHLILAGSLLGFDDAKAKVFDIAIQTGAIFAVVLVYWQKIRSTVVDLPTSRQAQRLTLNVIIGFLPAVVLALIFGKFIKAHLFTPTVVATTFILGGFVILWAERRPASATRVQTVDEMTPLDALKVGLVQCLAMIPGTSRSGATIIGGMLMGLSRKAATDFSFFLAIPTLIGAGVYSLYKERALLSAADIPMFAVGLVFSFISAWLCVRWLLRYISTNSFVPFAWYRIAFGIIVLVTAFTGLVNWSGG</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="59" xmlns="http://uniprot.org/uniprot">
    <accession>A9BTF7</accession>
    <name>A9BTF7_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ordered locus">Daci_2286</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="5" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Periplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the UPF0065 (bug) family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX34925.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012204208.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_2286"/>
    <dbReference type="PRIDE" id="A9BTF7"/>
    <dbReference type="EnsemblBacteria" id="ABX34925">
        <property type="protein sequence ID" value="ABX34925"/>
        <property type="gene ID" value="Daci_2286"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_2286"/>
    <dbReference type="eggNOG" id="COG3181">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_045683_1_2_4"/>
    <dbReference type="OMA" id="PNNLAMF"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0042597">
        <property type="term" value="C:periplasmic space"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.190.150">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005064">
        <property type="entry name" value="BUG"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR042100">
        <property type="entry name" value="Bug_dom1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006311">
        <property type="entry name" value="TAT_signal"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR42928">
        <property type="entry name" value="PTHR42928"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03401">
        <property type="entry name" value="TctC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF017082">
        <property type="entry name" value="YflP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51318">
        <property type="entry name" value="TAT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="3">
        <location>
            <begin position="1"/>
            <end position="32"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5002736028" evidence="3">
        <location>
            <begin position="33"/>
            <end position="330"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004418"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00006987"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="ABX34925.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="330" mass="34984" checksum="9FB78D60B7A3639C" modified="2008-01-15" version="1">MHAYPSPASRRCLLSAFCAAALAAAAGAPALAQGTDAFPERELTLIINYGAGGNTDVASRAIGNAMEGLLKKPVVPNNRAGAQGTLGVSSLARQKPDGYTLGVVTFSTIAITPHLMKVDYKVDDFDFIAGVARYRYGVAVRADSPYKTMADLVAASRQGKGIFFGAPSAPNNLAMYELGRKTGGRFEEINYKSGAETVAGLIGGQVDVIVQNPSDIVQHVKAGKMRLLASASPMRWKELPEVPTLREQGYDVEIDSWIGLAYPKGVPPALRDRLERVAMAAAEGPQVARIFESAGVDPAPLTGAEYRRKLVQGHESMGAAIKAANLPRMN</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="66" xmlns="http://uniprot.org/uniprot">
    <accession>A9BTG5</accession>
    <name>A9BTG5_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Short-chain dehydrogenase/reductase SDR</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Daci_2294</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="2" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX34933.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012204216.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_2294"/>
    <dbReference type="PRIDE" id="A9BTG5"/>
    <dbReference type="EnsemblBacteria" id="ABX34933">
        <property type="protein sequence ID" value="ABX34933"/>
        <property type="gene ID" value="Daci_2294"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_2294"/>
    <dbReference type="eggNOG" id="COG1028">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_010194_1_3_4"/>
    <dbReference type="OMA" id="ERVEFHK"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036291">
        <property type="entry name" value="NAD(P)-bd_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002347">
        <property type="entry name" value="SDR_fam"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00081">
        <property type="entry name" value="GDHRDH"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51735">
        <property type="entry name" value="SSF51735"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ABX34933.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="257" mass="26937" checksum="3CABB8B803E768B5" modified="2008-01-15" version="1">MADHSIRGKVALIAGGAKNLGGLIARDLAGHGARAVVVHYNSESSRAEAETTVAAVRALGAEAVALQGDLTRAGAVERLFAEAVDAVGRPDIAINTVGKVLKKPLMEISEAEYDEMAAVNGKSAFFFLKEAGRHVNDHGKIVTLVTSLLGAFTPFYSSYAGTKAPVEHFTRAAAKEFGARGISVTAVGPGPMDTPFFYGQEGADAVAYHKSAAALSPFSPSGLTHIEDVVPFIRHLVSDGWWITGQTILINGGYTTK</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="48" xmlns="http://uniprot.org/uniprot">
    <accession>A9BU26</accession>
    <name>A9BU26_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Daci_3103</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="2" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX35741.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012204942.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="PRIDE" id="A9BU26"/>
    <dbReference type="EnsemblBacteria" id="ABX35741">
        <property type="protein sequence ID" value="ABX35741"/>
        <property type="gene ID" value="Daci_3103"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_3103"/>
    <dbReference type="eggNOG" id="ENOG5031302">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_626605_0_0_4"/>
    <dbReference type="OMA" id="EITMSAN"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ABX35741.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="437" mass="46568" checksum="456CD59DFACB104E" modified="2008-01-15" version="1">MSDQAMFSQLYNALVDNLGTPNFQLLGTPKDFSWGTAPTGQWDPAAYQIVSGMPQWSAIGQYGSLDATLFDAVRQIFGHVTFKVSPEQQANQTELANLCVQKSNAMAKANSDMNQFYLSSKQNGGLIFAARYPDINTWLNNAPEAAAYVAAIQAATNAYNQAVKMKMELERASMPSDLQRAIDMMQIPSGDPASNNAPAGWTKVPDGSGILRWQPDFHIDTTGADWRAALSNGSAGAFSIAMKSSQSSSDFKSSFAKGSTSVGNFFWSVNASGGWSKSDLFNQDSSSAVKISCESSTRVKVNPGDWYPGGFMSELAKAQQGPNGQGYTIVAPWVANGGPGSSSLFGPNGIVAARVSELLVVYKPSFEITMSANTYQQNKQAFEGSAGVRIGPFTFGGTGGHQSEYTKSTAQANTFKGSSTSENPQIIGVIVDFPGIH</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="68" xmlns="http://uniprot.org/uniprot">
    <accession>A9BUK0</accession>
    <name>A9BUK0_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="6">Peptidoglycan D,D-transpeptidase FtsI</fullName>
            <ecNumber evidence="6">3.4.16.4</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="6">Penicillin-binding protein 3</fullName>
            <shortName evidence="6">PBP-3</shortName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="6" type="primary">ftsI</name>
        <name evidence="9" type="ordered locus">Daci_1464</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="9 10" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="10" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="6">Catalyzes cross-linking of the peptidoglycan cell wall at the division septum.</text>
    </comment>
    <comment type="pathway">
        <text evidence="6">Cell wall biogenesis; peptidoglycan biosynthesis.</text>
    </comment>
    <comment type="similarity">
        <text evidence="6">Belongs to the transpeptidase family. FtsI subfamily.</text>
    </comment>
    <dbReference type="EC" id="3.4.16.4" evidence="6"/>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX34108.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012203394.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_1464"/>
    <dbReference type="PRIDE" id="A9BUK0"/>
    <dbReference type="EnsemblBacteria" id="ABX34108">
        <property type="protein sequence ID" value="ABX34108"/>
        <property type="gene ID" value="Daci_1464"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_1464"/>
    <dbReference type="eggNOG" id="COG0768">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_009289_6_2_4"/>
    <dbReference type="OMA" id="HGKEEYY"/>
    <dbReference type="UniPathway" id="UPA00219"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005887">
        <property type="term" value="C:integral component of plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008658">
        <property type="term" value="F:penicillin binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008955">
        <property type="term" value="F:peptidoglycan glycosyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009002">
        <property type="term" value="F:serine-type D-Ala-D-Ala carboxypeptidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0071555">
        <property type="term" value="P:cell wall organization"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000917">
        <property type="term" value="P:division septum assembly"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043093">
        <property type="term" value="P:FtsZ-dependent cytokinesis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009252">
        <property type="term" value="P:peptidoglycan biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006508">
        <property type="term" value="P:proteolysis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008360">
        <property type="term" value="P:regulation of cell shape"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.710.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_02080">
        <property type="entry name" value="FtsI_transpept"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012338">
        <property type="entry name" value="Beta-lactam/transpept-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037532">
        <property type="entry name" value="FtsI_transpept"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005311">
        <property type="entry name" value="PBP_dimer"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036138">
        <property type="entry name" value="PBP_dimer_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001460">
        <property type="entry name" value="PCN-bd_Tpept"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03717">
        <property type="entry name" value="PBP_dimer"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00905">
        <property type="entry name" value="Transpeptidase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56519">
        <property type="entry name" value="SSF56519"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56601">
        <property type="entry name" value="SSF56601"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="6" id="KW-0121">Carboxypeptidase</keyword>
    <keyword evidence="5 6" id="KW-0131">Cell cycle</keyword>
    <keyword evidence="1 6" id="KW-0132">Cell division</keyword>
    <keyword evidence="6" id="KW-0997">Cell inner membrane</keyword>
    <keyword evidence="6" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="6" id="KW-0133">Cell shape</keyword>
    <keyword evidence="6" id="KW-0961">Cell wall biogenesis/degradation</keyword>
    <keyword evidence="9" id="KW-0328">Glycosyltransferase</keyword>
    <keyword evidence="2 6" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="3 6" id="KW-0472">Membrane</keyword>
    <keyword evidence="6" id="KW-0573">Peptidoglycan synthesis</keyword>
    <keyword evidence="6" id="KW-0645">Protease</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4 6" id="KW-0717">Septation</keyword>
    <keyword evidence="9" id="KW-0808">Transferase</keyword>
    <keyword evidence="6" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="6" id="KW-1133">Transmembrane helix</keyword>
    <feature type="domain" description="PBP_dimer" evidence="8">
        <location>
            <begin position="65"/>
            <end position="215"/>
        </location>
    </feature>
    <feature type="domain" description="Transpeptidase" evidence="7">
        <location>
            <begin position="257"/>
            <end position="553"/>
        </location>
    </feature>
    <feature type="active site" description="Acyl-ester intermediate" evidence="6">
        <location>
            <position position="304"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022618"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023210"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023306"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_02080"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="Pfam" id="PF00905"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="Pfam" id="PF03717"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="ABX34108.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="582" mass="63335" checksum="9D7741282E77B095" modified="2008-01-15" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="69" xmlns="http://uniprot.org/uniprot">
    <accession>A9BVD5</accession>
    <name>A9BVD5_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Monooxygenase FAD-binding</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_2159</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX34799.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012204082.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_2159"/>
    <dbReference type="PRIDE" id="A9BVD5"/>
    <dbReference type="EnsemblBacteria" id="ABX34799">
        <property type="protein sequence ID" value="ABX34799"/>
        <property type="gene ID" value="Daci_2159"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_2159"/>
    <dbReference type="eggNOG" id="COG0654">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_009665_19_3_4"/>
    <dbReference type="OMA" id="SVWAIFD"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0071949">
        <property type="term" value="F:FAD binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004497">
        <property type="term" value="F:monooxygenase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.50.50.60">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002938">
        <property type="entry name" value="FAD-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036188">
        <property type="entry name" value="FAD/NAD-bd_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01494">
        <property type="entry name" value="FAD_binding_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51905">
        <property type="entry name" value="SSF51905"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0503">Monooxygenase</keyword>
    <keyword evidence="2" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="FAD_binding_3" evidence="1">
        <location>
            <begin position="4"/>
            <end position="331"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF01494"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX34799.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="402" mass="43650" checksum="8DE364EBF3163EF8" modified="2008-01-15" version="1">MNKQVLIAGGGIGGLAAAIGASRAGWEVRLFEQAPALSEVGAGIQIGPNVVRRLQAWGLQKPLQQVVALPGSLRVRSAVTGQELAHMPLGSESVQRYGAAYATIHRADLQQLLREAAQTYPGMHLNLGQPIESFSETDGVVTVRTRAGKLIEGDALVAADGVRSILRQQLLGDGPPRVTGHLAYRALVHQAQLPKRLRATDVTAWLGSRMHAIQYPVRRGELQNLVIIIQGPAPEDLANWDHAGNLDDLVRVLQGSCPQLLDLVQHVPAAGGDWRLWPVGDRPPVQSAAQMARGVVALLGDAAHPMRPYLAQGAGMAIEDAAELQRALSMHDLDVNMRLRRYALNRWQRNARVQARSQRNGRIFHATGPVRWGRDLSLRLLGSRLMDLPWLYRGDGSAANAL</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="86" xmlns="http://uniprot.org/uniprot">
    <accession>A9BVF1</accession>
    <name>A9BVF1_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="6">tRNA N6-adenosine threonylcarbamoyltransferase</fullName>
            <ecNumber evidence="6">2.3.1.234</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="6">N6-L-threonylcarbamoyladenine synthase</fullName>
            <shortName evidence="6">t(6)A synthase</shortName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="6">t(6)A37 threonylcarbamoyladenosine biosynthesis protein TsaD</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="6">tRNA threonylcarbamoyladenosine biosynthesis protein TsaD</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="6" type="primary">tsaD</name>
        <name evidence="8" type="ordered locus">Daci_2380</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="9" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="6">Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine. Is involved in the transfer of the threonylcarbamoyl moiety of threonylcarbamoyl-AMP (TC-AMP) to the N6 group of A37, together with TsaE and TsaB. TsaD likely plays a direct catalytic role in this reaction.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1 6">
            <text>adenosine(37) in tRNA + L-threonylcarbamoyladenylate = AMP + H(+) + N(6)-L-threonylcarbamoyladenosine(37) in tRNA</text>
            <dbReference type="Rhea" id="RHEA:37059"/>
            <dbReference type="Rhea" id="RHEA-COMP:10162"/>
            <dbReference type="Rhea" id="RHEA-COMP:10163"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:73682"/>
            <dbReference type="ChEBI" id="CHEBI:74411"/>
            <dbReference type="ChEBI" id="CHEBI:74418"/>
            <dbReference type="ChEBI" id="CHEBI:456215"/>
            <dbReference type="EC" id="2.3.1.234"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="6">
            <name>Fe(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29033"/>
        </cofactor>
        <text evidence="6">Binds 1 Fe(2+) ion per subunit.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="6">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="6">Belongs to the KAE1 / TsaD family.</text>
    </comment>
    <comment type="caution">
        <text evidence="6">Lacks conserved residue(s) required for the propagation of feature annotation.</text>
    </comment>
    <dbReference type="EC" id="2.3.1.234" evidence="6"/>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX35018.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012204300.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_2380"/>
    <dbReference type="PRIDE" id="A9BVF1"/>
    <dbReference type="EnsemblBacteria" id="ABX35018">
        <property type="protein sequence ID" value="ABX35018"/>
        <property type="gene ID" value="Daci_2380"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_2380"/>
    <dbReference type="eggNOG" id="COG0533">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_023208_0_0_4"/>
    <dbReference type="OMA" id="HLEGHIY"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005506">
        <property type="term" value="F:iron ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0061711">
        <property type="term" value="F:N(6)-L-threonylcarbamoyladenine synthase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008233">
        <property type="term" value="F:peptidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006508">
        <property type="term" value="P:proteolysis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0002949">
        <property type="term" value="P:tRNA threonylcarbamoyladenosine modification"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01445">
        <property type="entry name" value="TsaD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043129">
        <property type="entry name" value="ATPase_NBD"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000905">
        <property type="entry name" value="Gcp-like_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017861">
        <property type="entry name" value="KAE1/TsaD"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017860">
        <property type="entry name" value="Peptidase_M22_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR022450">
        <property type="entry name" value="TsaD"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11735">
        <property type="entry name" value="PTHR11735"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11735:SF6">
        <property type="entry name" value="PTHR11735:SF6"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00814">
        <property type="entry name" value="TsaD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00789">
        <property type="entry name" value="OSIALOPTASE"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53067">
        <property type="entry name" value="SSF53067"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00329">
        <property type="entry name" value="gcp_kae1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR03723">
        <property type="entry name" value="T6A_TsaD_YgjD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01016">
        <property type="entry name" value="GLYCOPROTEASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5 6" id="KW-0012">Acyltransferase</keyword>
    <keyword evidence="6" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="8" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="6" id="KW-0408">Iron</keyword>
    <keyword evidence="4 6" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="8" id="KW-0645">Protease</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 6" id="KW-0808">Transferase</keyword>
    <keyword evidence="3 6" id="KW-0819">tRNA processing</keyword>
    <feature type="domain" description="TsaD" evidence="7">
        <location>
            <begin position="31"/>
            <end position="314"/>
        </location>
    </feature>
    <feature type="region of interest" description="Substrate binding" evidence="6">
        <location>
            <begin position="141"/>
            <end position="145"/>
        </location>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <position position="118"/>
        </location>
        <ligand>
            <name>Fe cation</name>
            <dbReference type="ChEBI" id="CHEBI:24875"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <position position="122"/>
        </location>
        <ligand>
            <name>Fe cation</name>
            <dbReference type="ChEBI" id="CHEBI:24875"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <position position="174"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <position position="187"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <position position="280"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <position position="308"/>
        </location>
        <ligand>
            <name>Fe cation</name>
            <dbReference type="ChEBI" id="CHEBI:24875"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001866"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022694"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023315"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01445"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="Pfam" id="PF00814"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="ABX35018.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="346" mass="36299" checksum="EDCCC317245A8435" modified="2008-01-15" version="1">MSLLILGIESSCDETGVALVEAPDGTGVPTLLSHALHSQIDMHRAYGGVVPELASRDHIRRVLPLTENVLGESGRSLDQVDVIAFTRGPGLAGALLVGAGVACAMAAALNKPVLGVHHLEGHLLSPFLSADPPEFPFVALLVSGGHTQLMRVDGVGSYAILGETIDDAAGEAFDKSAKLMGLPYPGGPVLSRLAEGGDAQAFKLPRPLLHSGDLDFSFAGLKTAVLTQAKKLGDDLEARKADLAASTQAAIVEVLVKKTLAALQQTGMKRVVVAGGVGANRLLRSQLDAACAKRKLRVHYPELHLCTDNGAMIAMAAAMRLQAGREVANRHYAFDVKPRWPLDSLA</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="100" xmlns="http://uniprot.org/uniprot">
    <accession>A9BVI0</accession>
    <name>A9BVI0_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="9">Phosphonate ABC transporter, ATPase subunit</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="9" type="ordered locus">Daci_2409</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="9 10" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="10" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX35047.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012204329.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_2409"/>
    <dbReference type="PRIDE" id="A9BVI0"/>
    <dbReference type="EnsemblBacteria" id="ABX35047">
        <property type="protein sequence ID" value="ABX35047"/>
        <property type="gene ID" value="Daci_2409"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_2409"/>
    <dbReference type="eggNOG" id="COG3638">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_000604_1_22_4"/>
    <dbReference type="OMA" id="CHNLETA"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015416">
        <property type="term" value="F:ABC-type phosphonate transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd03256">
        <property type="entry name" value="ABC_PhnC_transporter"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003593">
        <property type="entry name" value="AAA+_ATPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003439">
        <property type="entry name" value="ABC_transporter-like_ATP-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017871">
        <property type="entry name" value="ABC_transporter-like_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012693">
        <property type="entry name" value="ABC_transpr_PhnC"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00005">
        <property type="entry name" value="ABC_tran"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00382">
        <property type="entry name" value="AAA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR02315">
        <property type="entry name" value="ABC_phnC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00211">
        <property type="entry name" value="ABC_TRANSPORTER_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50893">
        <property type="entry name" value="ABC_TRANSPORTER_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3 6" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="1" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="5" id="KW-0472">Membrane</keyword>
    <keyword evidence="2 6" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4" id="KW-1278">Translocase</keyword>
    <feature type="domain" description="ABC transporter" evidence="8">
        <location>
            <begin position="2"/>
            <end position="246"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="7">
        <location>
            <begin position="248"/>
            <end position="271"/>
        </location>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <begin position="34"/>
            <end position="41"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022967"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00434"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="PROSITE" id="PS50893"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="ABX35047.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="292" mass="31044" checksum="276973007B19EA99" modified="2008-01-15" version="1">MIRIRQLRKSYGSNHVLHGIDLDVQPGEFVVMLGLSGAGKSTLLRCMNGLARADSGTLEVGGMDLMLGGGRHSRRELARHVAMVFQHHNLVPRLSVRKNVLTGRLGQTGTLASVLQLFRESDIRLADQCLERVGLAHKALERTEALSGGQMQRVGIARALAQQPQVILADEPVASLDPKTARSVLQYLRDATRELGIAVVCNLHQVDYAREFGDRVLGLAQGRMVYDGSPQALDEAALQAIYHAQPTAGQGAGQGAEPDTPPGTAAIGPAGLHAQAPVPASWMRASAPAGGL</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="73" xmlns="http://uniprot.org/uniprot">
    <accession>A9BVP1</accession>
    <name>A9BVP1_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Short-chain dehydrogenase/reductase SDR</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_2470</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the short-chain dehydrogenases/reductases (SDR) family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX35108.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012204389.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_2470"/>
    <dbReference type="PRIDE" id="A9BVP1"/>
    <dbReference type="EnsemblBacteria" id="ABX35108">
        <property type="protein sequence ID" value="ABX35108"/>
        <property type="gene ID" value="Daci_2470"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_2470"/>
    <dbReference type="eggNOG" id="COG1028">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_010194_14_0_4"/>
    <dbReference type="OMA" id="GMVRTWA"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036291">
        <property type="entry name" value="NAD(P)-bd_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002347">
        <property type="entry name" value="SDR_fam"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00106">
        <property type="entry name" value="adh_short"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00081">
        <property type="entry name" value="GDHRDH"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00080">
        <property type="entry name" value="SDRFAMILY"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51735">
        <property type="entry name" value="SSF51735"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="RuleBase" id="RU000363"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX35108.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="302" mass="30742" checksum="B27F45621FA861AA" modified="2008-01-15" version="1">MAIEFEGRVAIVTGAGGGLGRLHALALAARGAKVLVNDLGGAVDGSGSSATAAQAVVDEIRAAGGQALANGASVTDFAAVQAMVQQAVDAWGRVDILVNNAGILRDKSFAKMDMDDFRLVVEVHLMGAAHCCKAVWPHMQAQNYGRIVMTTSSTGLYGNFGQANYGAAKLAQVGLMQTLAIEGAKHGIHVNALAPTAATRMTEGLMPEAVLAALKPEAVVPAMLVLAHESAPTRTTLCAGAGGFEAAFITLTEGVYLGQGDQVPEQLAAQLAQVLDRSGEQVPASGAAQGTLEVGKAMAAAR</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-01-19" version="59" xmlns="http://uniprot.org/uniprot">
    <accession>A9BVT0</accession>
    <name>A9BVT0_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Aminotransferase class I and II</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_2805</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX35443.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012204653.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_2805"/>
    <dbReference type="EnsemblBacteria" id="ABX35443">
        <property type="protein sequence ID" value="ABX35443"/>
        <property type="gene ID" value="Daci_2805"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_2805"/>
    <dbReference type="eggNOG" id="COG0079">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_017584_3_2_4"/>
    <dbReference type="OMA" id="NACGPCP"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030170">
        <property type="term" value="F:pyridoxal phosphate binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008483">
        <property type="term" value="F:transaminase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009058">
        <property type="term" value="P:biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.640.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.1150.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004839">
        <property type="entry name" value="Aminotransferase_I/II"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015424">
        <property type="entry name" value="PyrdxlP-dep_Trfase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015421">
        <property type="entry name" value="PyrdxlP-dep_Trfase_major"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015422">
        <property type="entry name" value="PyrdxlP-dep_Trfase_small"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00155">
        <property type="entry name" value="Aminotran_1_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53383">
        <property type="entry name" value="SSF53383"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0032">Aminotransferase</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Aminotran_1_2" evidence="1">
        <location>
            <begin position="191"/>
            <end position="329"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF00155"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX35443.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="347" mass="37715" checksum="6037DF470520049D" modified="2008-01-15" version="1">MKPIPVTHGGTDALGVPAHDFSTNRNACGPCPQALDMLAQAHAAQYPDPHYTALRARLADFHGVPAERIVIAASASDFIHRITMHAAREGAAVASLPAHHYGDYAHAAQVWRLLPAARDGITEAGPGLHWACAPSSPLGQPEDVWPLWSEPAPPGTWRVIDCAYAPLRLEPGMEPAVPSQVRDAWQMWTPNKALGMTGVRAAYAIAPEAVPHDEIDALRALSPSWPVGAHGEAMLTAWTAPATRQWLAQSLQRLRDWKAQQLDLVQRLGWQVLPGSQANYFVARWPQAQQGDVMQTRLAQLRAQGIKLRDCDSFGLPGCVRMGVLAPASQNALLAAWQPMEKHHAIE</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="95" xmlns="http://uniprot.org/uniprot">
    <accession>A9BVU1</accession>
    <name>A9BVU1_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="5 10">Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase</fullName>
            <shortName evidence="10">NN:DBI PRT</shortName>
            <ecNumber evidence="4 10">2.4.2.21</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="9 10">N(1)-alpha-phosphoribosyltransferase</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="10" type="primary">cobT</name>
        <name evidence="12" type="ordered locus">Daci_2816</name>
    </gene>
    <organism evidence="12 13">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="12 13" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="13">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="13" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="13">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="10">Catalyzes the synthesis of alpha-ribazole-5'-phosphate from nicotinate mononucleotide (NAMN) and 5,6-dimethylbenzimidazole (DMB).</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1 10">
            <text>5,6-dimethylbenzimidazole + nicotinate beta-D-ribonucleotide = alpha-ribazole 5'-phosphate + H(+) + nicotinate</text>
            <dbReference type="Rhea" id="RHEA:11196"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:15890"/>
            <dbReference type="ChEBI" id="CHEBI:32544"/>
            <dbReference type="ChEBI" id="CHEBI:57502"/>
            <dbReference type="ChEBI" id="CHEBI:57918"/>
            <dbReference type="EC" id="2.4.2.21"/>
        </reaction>
    </comment>
    <comment type="pathway">
        <text evidence="2 10">Nucleoside biosynthesis; alpha-ribazole biosynthesis; alpha-ribazole from 5,6-dimethylbenzimidazole: step 1/2.</text>
    </comment>
    <comment type="similarity">
        <text evidence="3 10">Belongs to the CobT family.</text>
    </comment>
    <dbReference type="EC" id="2.4.2.21" evidence="4 10"/>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX35454.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_2816"/>
    <dbReference type="PRIDE" id="A9BVU1"/>
    <dbReference type="EnsemblBacteria" id="ABX35454">
        <property type="protein sequence ID" value="ABX35454"/>
        <property type="gene ID" value="Daci_2816"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_2816"/>
    <dbReference type="eggNOG" id="COG2038">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_002982_0_0_4"/>
    <dbReference type="OMA" id="AWMRKCA"/>
    <dbReference type="UniPathway" id="UPA00061">
        <property type="reaction ID" value="UER00516"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008939">
        <property type="term" value="F:nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009236">
        <property type="term" value="P:cobalamin biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd02439">
        <property type="entry name" value="DMB-PRT_CobT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.1610.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.10210">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00230">
        <property type="entry name" value="CobT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003200">
        <property type="entry name" value="Nict_dMeBzImd_PRibTrfase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017846">
        <property type="entry name" value="Nict_dMeBzImd_PRibTrfase_bact"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023195">
        <property type="entry name" value="Nict_dMeBzImd_PRibTrfase_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036087">
        <property type="entry name" value="Nict_dMeBzImd_PRibTrfase_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02277">
        <property type="entry name" value="DBI_PRT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52733">
        <property type="entry name" value="SSF52733"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR03160">
        <property type="entry name" value="cobT_DBIPRT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="6 10" id="KW-0169">Cobalamin biosynthesis</keyword>
    <keyword evidence="7 10 12" id="KW-0328">Glycosyltransferase</keyword>
    <keyword evidence="13" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="8 10 12" id="KW-0808">Transferase</keyword>
    <feature type="region of interest" description="Disordered" evidence="11">
        <location>
            <begin position="22"/>
            <end position="46"/>
        </location>
    </feature>
    <feature type="active site" description="Proton acceptor" evidence="10">
        <location>
            <position position="378"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001058"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00005049"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00007110"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00011991"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00015486"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022573"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022676"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00030686"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00230"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="EMBL" id="ABX35454.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="13">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="414" mass="43203" checksum="AAE3156AF64B33EC" modified="2008-01-15" version="1">MVLPELRGAPYLRLCNPPATPAPGQGRFAMSTPTPHSAEPTEHSHDGANAATTAIAAIPAIASLADAAFTQRVQHAIDHKTKPLGALGRLEQLALRIACILGQDRPVLQQPQMLVFAADHGLAARGVSAYPVDVTWQMVENFMAGGAAVSVLARQHGLALNVVDCGVARDFPAREQDPDDKLPQPGQPRLWRRKLGYGTRDCSQGPAMTVTECAMALRNGAALVRQLPGNALLLGEMGIGNTSSASLLLARLCGEPLAEVTGAGTGLDAAGLARKIGVLQEVLQLHAQATEPLDALAAMGGFEVATMVGAVLQAAAERRVIVVDGFITTAAVLVASRLQPAVLERCVFSHRSGEPGHVRMLAHLGAEPLLDWQLRLGEGSGAALAWPLLVSACAMLGEMASFAQAGVSTRSEEA</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="80" xmlns="http://uniprot.org/uniprot">
    <accession>A9BW00</accession>
    <name>A9BW00_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Transcriptional regulator, LysR family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Daci_3178</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="4" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the LysR transcriptional regulatory family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX35816.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012205016.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_3178"/>
    <dbReference type="PRIDE" id="A9BW00"/>
    <dbReference type="EnsemblBacteria" id="ABX35816">
        <property type="protein sequence ID" value="ABX35816"/>
        <property type="gene ID" value="Daci_3178"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_3178"/>
    <dbReference type="eggNOG" id="COG0583">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_039613_6_0_4"/>
    <dbReference type="OMA" id="ERSIVMV"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003700">
        <property type="term" value="F:DNA-binding transcription factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005119">
        <property type="entry name" value="LysR_subst-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000847">
        <property type="entry name" value="Tscrpt_reg_HTH_LysR"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036390">
        <property type="entry name" value="WH_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00126">
        <property type="entry name" value="HTH_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03466">
        <property type="entry name" value="LysR_substrate"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00039">
        <property type="entry name" value="HTHLYSR"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46785">
        <property type="entry name" value="SSF46785"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50931">
        <property type="entry name" value="HTH_LYSR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HTH lysR-type" evidence="2">
        <location>
            <begin position="3"/>
            <end position="60"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00009437"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS50931"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ABX35816.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="305" mass="33286" checksum="5CCE3D259F238C1A" modified="2008-01-15" version="1">MNISLRQLRAFLAVAESRNFSRAGELMALTQPAVSRNVTELEQALGVQLLHRTTREVELTDAGRLLQGHATRVLDALDECLLEVSGLATQRLGKVRVASSPTLSAHLMPRCIARCREQAPGIELLLLDRIQSDVLQSVRSGEVDFGVVIDPQGRDDLHCETILSEPFCLVCPATHRLARKRQVAWSDLAGQPLVLLDHASGSRRLIDAALQAHDAEAAVVQEVGHTTTIFCMLQAGLGLSVVPELAVPQAWRTPGSGATTPDALASRPLLPRVQRDIMLVRRRQRELSPVAQSVWDLIRGEAGQL</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2021-06-02" version="32" xmlns="http://uniprot.org/uniprot">
    <accession>A9BW53</accession>
    <name>A9BW53_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_3231</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX35869.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012205069.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="ABX35869">
        <property type="protein sequence ID" value="ABX35869"/>
        <property type="gene ID" value="Daci_3231"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_3231"/>
    <dbReference type="HOGENOM" id="CLU_2129369_0_0_4"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="12"/>
            <end position="35"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="41"/>
            <end position="63"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="84"/>
            <end position="109"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX35869.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="113" mass="12223" checksum="5E977CB1B496FDD9" modified="2008-01-15" version="1">MSRFNDMSAGEACSMLFGGFVAFLLSIVWVGFFAGLLLSTLWGWFIVPVFGLPTISIIQAWGIAQVFRCLQGLKLSEEKSKDGFGIALAKAFLGVPLAVAVIMGIAWVAKSWM</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="56" xmlns="http://uniprot.org/uniprot">
    <accession>A9BW58</accession>
    <name>A9BW58_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Terminase_6C domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_3236</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX35874.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012205074.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_3236"/>
    <dbReference type="PRIDE" id="A9BW58"/>
    <dbReference type="EnsemblBacteria" id="ABX35874">
        <property type="protein sequence ID" value="ABX35874"/>
        <property type="gene ID" value="Daci_3236"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_3236"/>
    <dbReference type="eggNOG" id="COG1783">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_052644_0_0_4"/>
    <dbReference type="OMA" id="PPVKDRI"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035421">
        <property type="entry name" value="Terminase_6C"/>
    </dbReference>
    <dbReference type="Pfam" id="PF17289">
        <property type="entry name" value="Terminase_6C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Terminase_6C" evidence="1">
        <location>
            <begin position="258"/>
            <end position="409"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF17289"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX35874.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="428" mass="48109" checksum="91B2FFB9CAD4C784" modified="2008-01-15" version="1">MQTVSPRLNVPQSRFLSLPHKFRAFVAGFGSGKTWVGCSGLSAHAWEFPRINAGYFAPSYPQIRDIFFPTIEEVAHDWGLRTEIRESNKEVHLYSGRQYRTTVICRSMDRPESIVGFKIGQALVDELDVMAKQKAEQAWRKIIARMRYNVDGLKNGVDVTTTPEGFKFTHQQFVKAVQDKPELAKLYGLIQASTFENAKNLPADYIPSLFDSYPKQLIDAYLRGLFVNLTSGSVYPDFDRKLNHSFESLQEGEPVMLGMDFNRLHMAAVAYVLRDGWPVAVDEITDGRDTPYMARLFRERYQDKGHAVTVYPDASGQNSSSKNASESDLSILRDHNLTVQVNGTNPAVADRINAVNALILNGEGARRLKVNTLRCPKLTEALEQQAYDKNGLPDKSSGVDHVIDAAGYPIAYMWPIVKKQAAAFTFRM</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2020-02-26" version="31" xmlns="http://uniprot.org/uniprot">
    <accession>A9BW80</accession>
    <name>A9BW80_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_3258</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX35896.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_3258"/>
    <dbReference type="EnsemblBacteria" id="ABX35896">
        <property type="protein sequence ID" value="ABX35896"/>
        <property type="gene ID" value="Daci_3258"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_3258"/>
    <dbReference type="HOGENOM" id="CLU_2632283_0_0_4"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="21"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="38"/>
            <end position="57"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX35896.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="77" mass="6477" checksum="2F1A1D3F0F5AF754" modified="2008-01-15" version="1">MLLPVGIPAATASGQSGPGAGAAANRFAGEFAGGGGNSTGGSAAGAGGPFGGGGGGANAGTGGAGGAGVVIIEYSLG</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="82" xmlns="http://uniprot.org/uniprot">
    <accession>A9BWE7</accession>
    <name>A9BWE7_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="13">TonB-dependent siderophore receptor</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="13" type="ordered locus">Daci_3531</name>
    </gene>
    <organism evidence="13 14">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="13 14" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="14">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="14" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="14">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="9">Cell outer membrane</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="1 9">Belongs to the TonB-dependent receptor family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX36167.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012205367.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_3531"/>
    <dbReference type="PRIDE" id="A9BWE7"/>
    <dbReference type="EnsemblBacteria" id="ABX36167">
        <property type="protein sequence ID" value="ABX36167"/>
        <property type="gene ID" value="Daci_3531"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_3531"/>
    <dbReference type="eggNOG" id="COG4773">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_008287_9_3_4"/>
    <dbReference type="OMA" id="GFYNQGW"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009279">
        <property type="term" value="C:cell outer membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015344">
        <property type="term" value="F:siderophore uptake transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0038023">
        <property type="term" value="F:signaling receptor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0055072">
        <property type="term" value="P:iron ion homeostasis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.170.130.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.170.20">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012910">
        <property type="entry name" value="Plug_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037066">
        <property type="entry name" value="Plug_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR039423">
        <property type="entry name" value="TonB-dep_rcpt"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000531">
        <property type="entry name" value="TonB-dep_rcpt_b-brl"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036942">
        <property type="entry name" value="TonB_rcpt_b-brl_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010917">
        <property type="entry name" value="TonB_rcpt_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010105">
        <property type="entry name" value="TonB_sidphr_rcpt"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR32552">
        <property type="entry name" value="PTHR32552"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07715">
        <property type="entry name" value="Plug"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00593">
        <property type="entry name" value="TonB_dep_Rec"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01783">
        <property type="entry name" value="TonB-siderophor"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01156">
        <property type="entry name" value="TONB_DEPENDENT_REC_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="8" id="KW-0998">Cell outer membrane</keyword>
    <keyword evidence="2" id="KW-0406">Ion transport</keyword>
    <keyword evidence="4" id="KW-0408">Iron</keyword>
    <keyword evidence="2" id="KW-0410">Iron transport</keyword>
    <keyword evidence="6 9" id="KW-0472">Membrane</keyword>
    <keyword evidence="7 13" id="KW-0675">Receptor</keyword>
    <keyword evidence="14" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 10" id="KW-0732">Signal</keyword>
    <keyword evidence="5 9" id="KW-0798">TonB box</keyword>
    <keyword evidence="2" id="KW-0813">Transport</keyword>
    <feature type="signal peptide" evidence="10">
        <location>
            <begin position="1"/>
            <end position="38"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5002735159" evidence="10">
        <location>
            <begin position="39"/>
            <end position="740"/>
        </location>
    </feature>
    <feature type="domain" description="Plug" evidence="12">
        <location>
            <begin position="88"/>
            <end position="189"/>
        </location>
    </feature>
    <feature type="domain" description="TonB_dep_Rec" evidence="11">
        <location>
            <begin position="295"/>
            <end position="737"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00009810"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022496"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022729"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023004"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023077"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023170"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00023237"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="RuleBase" id="RU003357"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="11">
        <source>
            <dbReference type="Pfam" id="PF00593"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="12">
        <source>
            <dbReference type="Pfam" id="PF07715"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="13">
        <source>
            <dbReference type="EMBL" id="ABX36167.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="14">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="740" mass="81173" checksum="AFB9FCBB6AEB88AE" modified="2008-01-15" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-05-25" version="60" xmlns="http://uniprot.org/uniprot">
    <accession>A9BWE9</accession>
    <name>A9BWE9_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="7">Feruloyl esterase</fullName>
            <ecNumber evidence="7">3.1.1.73</ecNumber>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ordered locus">Daci_3533</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="8" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the tannase family.</text>
    </comment>
    <dbReference type="EC" id="3.1.1.73" evidence="7"/>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX36169.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012205369.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_3533"/>
    <dbReference type="EnsemblBacteria" id="ABX36169">
        <property type="protein sequence ID" value="ABX36169"/>
        <property type="gene ID" value="Daci_3533"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_3533"/>
    <dbReference type="eggNOG" id="COG0627">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_014819_4_0_4"/>
    <dbReference type="OMA" id="LTPMAKN"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030600">
        <property type="term" value="F:feruloyl esterase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.1820">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029058">
        <property type="entry name" value="AB_hydrolase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011118">
        <property type="entry name" value="Tannase/feruloyl_esterase"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33938">
        <property type="entry name" value="PTHR33938"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07519">
        <property type="entry name" value="Tannase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53474">
        <property type="entry name" value="SSF53474"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-0106">Calcium</keyword>
    <keyword evidence="4 7" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="3" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0719">Serine esterase</keyword>
    <keyword evidence="6" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="6">
        <location>
            <begin position="1"/>
            <end position="21"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5002735893" evidence="6">
        <location>
            <begin position="22"/>
            <end position="564"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00006249"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022487"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022837"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="ABX36169.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="564" mass="59097" checksum="4BE4197B5ACA3036" modified="2008-01-15" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="62" xmlns="http://uniprot.org/uniprot">
    <accession>A9BWJ4</accession>
    <name>A9BWJ4_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ordered locus">Daci_3580</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="5" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Periplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the UPF0065 (bug) family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX36214.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012205414.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_3580"/>
    <dbReference type="PRIDE" id="A9BWJ4"/>
    <dbReference type="EnsemblBacteria" id="ABX36214">
        <property type="protein sequence ID" value="ABX36214"/>
        <property type="gene ID" value="Daci_3580"/>
    </dbReference>
    <dbReference type="GeneID" id="60687789"/>
    <dbReference type="KEGG" id="dac:Daci_3580"/>
    <dbReference type="eggNOG" id="COG3181">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_045683_0_1_4"/>
    <dbReference type="OMA" id="DVQSDAW"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0042597">
        <property type="term" value="C:periplasmic space"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.190.150">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005064">
        <property type="entry name" value="BUG"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR042100">
        <property type="entry name" value="Bug_dom1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006311">
        <property type="entry name" value="TAT_signal"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR42928">
        <property type="entry name" value="PTHR42928"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03401">
        <property type="entry name" value="TctC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF017082">
        <property type="entry name" value="YflP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51318">
        <property type="entry name" value="TAT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="3">
        <location>
            <begin position="1"/>
            <end position="34"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5002735899" evidence="3">
        <location>
            <begin position="35"/>
            <end position="336"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004418"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00006987"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="ABX36214.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="336" mass="34885" checksum="CE853D1632DFD915" modified="2008-01-15" version="1">MNTRRNTLRLSLGLALSATAAAAALLAAPATAVAQGADAWPSRPIKLIVPYAAGGFADTRARKIADKIGQSLGQPIVIDNRGGAGGVTGTDAIAKATDGHTFGFGSPGPLVTNPMLMKKLPYNAARDLQPIILIEEAPLILTTAPNQPFKTVAELVAAAKAKPGTLTYGSSGVGGAHHLSGELLAFQTRTDMVHVPYKGGALAATDLMGGHLAFMFEMGYAALPAIQGDKVKALAVSSKQRLKVLPSVPTLDEAGIKGFESYNWLGMIAPASTPPAVIERLNKAVNEALKDAEVRAMIENTGGMVMGGTPQAYGKFIEAERAKWGPVIKNANITLD</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="68" xmlns="http://uniprot.org/uniprot">
    <accession>A9BWN3</accession>
    <name>A9BWN3_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="12">Gluconate 2-dehydrogenase (Acceptor)</fullName>
            <ecNumber evidence="12">1.1.99.3</ecNumber>
        </submittedName>
    </protein>
    <gene>
        <name evidence="12" type="ordered locus">Daci_3929</name>
    </gene>
    <organism evidence="12 13">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="12 13" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="13">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="13" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="13">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="8">
            <name>heme c</name>
            <dbReference type="ChEBI" id="CHEBI:61717"/>
        </cofactor>
        <text evidence="8">Binds 3 heme c groups covalently per subunit.</text>
    </comment>
    <comment type="PTM">
        <text evidence="9">Binds 3 heme groups per subunit.</text>
    </comment>
    <dbReference type="EC" id="1.1.99.3" evidence="12"/>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX36560.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012205754.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_3929"/>
    <dbReference type="PRIDE" id="A9BWN3"/>
    <dbReference type="EnsemblBacteria" id="ABX36560">
        <property type="protein sequence ID" value="ABX36560"/>
        <property type="gene ID" value="Daci_3929"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_3929"/>
    <dbReference type="eggNOG" id="COG2010">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_028594_0_1_4"/>
    <dbReference type="OMA" id="SHCGACH"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009055">
        <property type="term" value="F:electron transfer activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0033717">
        <property type="term" value="F:gluconate 2-dehydrogenase (acceptor) activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0020037">
        <property type="term" value="F:heme binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005506">
        <property type="term" value="F:iron ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.760.10">
        <property type="match status" value="3"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009056">
        <property type="entry name" value="Cyt_c-like_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036909">
        <property type="entry name" value="Cyt_c-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014353">
        <property type="entry name" value="Membr-bd_ADH_cyt_c"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00034">
        <property type="entry name" value="Cytochrom_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13442">
        <property type="entry name" value="Cytochrome_CBB3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF000018">
        <property type="entry name" value="Mb_ADH_cyt_c"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46626">
        <property type="entry name" value="SSF46626"/>
        <property type="match status" value="3"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51007">
        <property type="entry name" value="CYTC"/>
        <property type="match status" value="3"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="2 8 10" id="KW-0349">Heme</keyword>
    <keyword evidence="6 9 10" id="KW-0408">Iron</keyword>
    <keyword evidence="7" id="KW-0472">Membrane</keyword>
    <keyword evidence="3 9 10" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="12" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="13" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="5" id="KW-0677">Repeat</keyword>
    <keyword evidence="4" id="KW-0732">Signal</keyword>
    <feature type="domain" description="Cytochrome c" evidence="11">
        <location>
            <begin position="45"/>
            <end position="148"/>
        </location>
    </feature>
    <feature type="domain" description="Cytochrome c" evidence="11">
        <location>
            <begin position="190"/>
            <end position="298"/>
        </location>
    </feature>
    <feature type="domain" description="Cytochrome c" evidence="11">
        <location>
            <begin position="324"/>
            <end position="416"/>
        </location>
    </feature>
    <feature type="binding site" description="covalent" evidence="8">
        <location>
            <position position="59"/>
        </location>
        <ligand>
            <name>heme</name>
            <dbReference type="ChEBI" id="CHEBI:30413"/>
            <label>1</label>
        </ligand>
    </feature>
    <feature type="binding site" description="covalent" evidence="8">
        <location>
            <position position="62"/>
        </location>
        <ligand>
            <name>heme</name>
            <dbReference type="ChEBI" id="CHEBI:30413"/>
            <label>1</label>
        </ligand>
    </feature>
    <feature type="binding site" description="axial binding residue" evidence="9">
        <location>
            <position position="63"/>
        </location>
        <ligand>
            <name>heme</name>
            <dbReference type="ChEBI" id="CHEBI:30413"/>
            <label>1</label>
        </ligand>
        <ligandPart>
            <name>Fe</name>
            <dbReference type="ChEBI" id="CHEBI:18248"/>
        </ligandPart>
    </feature>
    <feature type="binding site" description="covalent" evidence="8">
        <location>
            <position position="205"/>
        </location>
        <ligand>
            <name>heme</name>
            <dbReference type="ChEBI" id="CHEBI:30413"/>
            <label>2</label>
        </ligand>
    </feature>
    <feature type="binding site" description="covalent" evidence="8">
        <location>
            <position position="208"/>
        </location>
        <ligand>
            <name>heme</name>
            <dbReference type="ChEBI" id="CHEBI:30413"/>
            <label>2</label>
        </ligand>
    </feature>
    <feature type="binding site" description="axial binding residue" evidence="9">
        <location>
            <position position="209"/>
        </location>
        <ligand>
            <name>heme</name>
            <dbReference type="ChEBI" id="CHEBI:30413"/>
            <label>2</label>
        </ligand>
        <ligandPart>
            <name>Fe</name>
            <dbReference type="ChEBI" id="CHEBI:18248"/>
        </ligandPart>
    </feature>
    <feature type="binding site" description="covalent" evidence="8">
        <location>
            <position position="337"/>
        </location>
        <ligand>
            <name>heme</name>
            <dbReference type="ChEBI" id="CHEBI:30413"/>
            <label>3</label>
        </ligand>
    </feature>
    <feature type="binding site" description="covalent" evidence="8">
        <location>
            <position position="340"/>
        </location>
        <ligand>
            <name>heme</name>
            <dbReference type="ChEBI" id="CHEBI:30413"/>
            <label>3</label>
        </ligand>
    </feature>
    <feature type="binding site" description="axial binding residue" evidence="9">
        <location>
            <position position="341"/>
        </location>
        <ligand>
            <name>heme</name>
            <dbReference type="ChEBI" id="CHEBI:30413"/>
            <label>3</label>
        </ligand>
        <ligandPart>
            <name>Fe</name>
            <dbReference type="ChEBI" id="CHEBI:18248"/>
        </ligandPart>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022617"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022729"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022737"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023004"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="PIRSR" id="PIRSR000018-50"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="PIRSR" id="PIRSR000018-51"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00433"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="11">
        <source>
            <dbReference type="PROSITE" id="PS51007"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="EMBL" id="ABX36560.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="13">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="443" mass="47802" checksum="F6A36F60B1A0A542" modified="2008-01-15" version="1">MHTLKKITLGVVGLAAVAGAAFWLATGRSEIAPLQQIPVQEFSQQQIDQGRRLAHMGDCAVCHTAPGGQRNAGGLAMPSPFGTIYSTNITPDAETGIGRWSYEAFERAMRHGVDREGNYLYPAFPYTAFTRVTDEDMKALYAFLMTEPAVSNEAPKTALNFPFNVRRGLALWNALYLEPGEQPAPANQSGEWIRGAYLVEGLGHCAACHSPRNQFGAEKKGADHLAGAFIDGWDAPALNDKAVAPLPWTREDLVRYMQTGFSERHGVASGPMAPVIEGLSHQSAEDINAMATYLMSYRKPVADAAGAGDAQALVKEKTEVAKLPVDAQGYRLYQGACMACHRADPSGVLAGSSFGVRPQLSLNTNLYSDSPTNAIHVVLNGITQPARPQLGTMPAFRHNLSDDQIATLLNTMRSQYGLQPWAGLSDKVKALREETRPGKVAAH</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="57" xmlns="http://uniprot.org/uniprot">
    <accession>A9BWV5</accession>
    <name>A9BWV5_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Thioesterase superfamily protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Daci_4309</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="2" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX36940.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="PRIDE" id="A9BWV5"/>
    <dbReference type="EnsemblBacteria" id="ABX36940">
        <property type="protein sequence ID" value="ABX36940"/>
        <property type="gene ID" value="Daci_4309"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_4309"/>
    <dbReference type="eggNOG" id="COG0824">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_101141_2_2_4"/>
    <dbReference type="OMA" id="DMDAMGH"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029069">
        <property type="entry name" value="HotDog_dom_sf"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54637">
        <property type="entry name" value="SSF54637"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ABX36940.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="156" mass="17823" checksum="58E2A9733FA42E57" modified="2008-01-15" version="1">MRWRYNKETAGMRIEIPEYKKWVHEMRFKVRWGDMDAMGHVNNAMYFRYLETARIDWMVEAGMAPTPGGQGPVIVNAFCNFHQQLAYPDEVLLKMYVSDPGRTTFETWGTMERVSEPGVICAAGGGTVIWVDFPRQKAIELPDWVREMVGAGTSPG</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="58" xmlns="http://uniprot.org/uniprot">
    <accession>A9BWV7</accession>
    <name>A9BWV7_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_4311</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX36942.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012206114.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_4311"/>
    <dbReference type="PRIDE" id="A9BWV7"/>
    <dbReference type="EnsemblBacteria" id="ABX36942">
        <property type="protein sequence ID" value="ABX36942"/>
        <property type="gene ID" value="Daci_4311"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_4311"/>
    <dbReference type="eggNOG" id="COG2984">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_058196_1_0_4"/>
    <dbReference type="OMA" id="GAKLVKH"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="CDD" id="cd06325">
        <property type="entry name" value="PBP1_ABC_unchar_transporter"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007487">
        <property type="entry name" value="ABC_transpt-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR028082">
        <property type="entry name" value="Peripla_BP_I"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR35271">
        <property type="entry name" value="PTHR35271"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04392">
        <property type="entry name" value="ABC_sub_bind"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53822">
        <property type="entry name" value="SSF53822"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="1">
        <location>
            <begin position="1"/>
            <end position="25"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5002736124" evidence="1">
        <location>
            <begin position="26"/>
            <end position="323"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX36942.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="323" mass="33582" checksum="D5173E6EEDA7FF33" modified="2008-01-15" version="1">MKHLSWAPLGALALAISAIAGGAHAADEKSVAVTAIVEHPALDAVRDGVQAALKEAGYEAGKNLKWQYQSAQGNTGTAAQIARKFVGDKPDAIVAIATPSAQAVVASTKTVPVVFSAVTDPVAAKLVPSWEPSKNNVTGVSDLLALDKQMDLVKQVVPNAKRVGMVYNPGEANSAVVVKELKALLPKLGMTLVEAAAPRSVDVSSAARSLVGKVDVIYTNTDNNVVSAYESLVKVGQDAKIPLVASDTDSVKRGAVAALGINYRDLGEQTGRMVVRILKGEKPGDMKTEVSTKMELFVNPGAAEKQGVKLSDALVKSAAQVIK</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2021-06-02" version="63" xmlns="http://uniprot.org/uniprot">
    <accession>A9BX10</accession>
    <name>A9BX10_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">Protein-tyrosine-phosphatase</fullName>
            <ecNumber evidence="2">3.1.3.48</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="5" type="ordered locus">Daci_4364</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="6" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>H2O + O-phospho-L-tyrosyl-[protein] = L-tyrosyl-[protein] + phosphate</text>
            <dbReference type="Rhea" id="RHEA:10684"/>
            <dbReference type="Rhea" id="RHEA-COMP:10136"/>
            <dbReference type="Rhea" id="RHEA-COMP:10137"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:43474"/>
            <dbReference type="ChEBI" id="CHEBI:46858"/>
            <dbReference type="ChEBI" id="CHEBI:82620"/>
            <dbReference type="EC" id="3.1.3.48"/>
        </reaction>
    </comment>
    <dbReference type="EC" id="3.1.3.48" evidence="2"/>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX36995.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012206167.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_4364"/>
    <dbReference type="EnsemblBacteria" id="ABX36995">
        <property type="protein sequence ID" value="ABX36995"/>
        <property type="gene ID" value="Daci_4364"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_4364"/>
    <dbReference type="eggNOG" id="COG4551">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_144002_0_0_4"/>
    <dbReference type="OMA" id="FVCSRNQ"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004725">
        <property type="term" value="F:protein tyrosine phosphatase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023485">
        <property type="entry name" value="Ptyr_pPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036196">
        <property type="entry name" value="Ptyr_pPase_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016919">
        <property type="entry name" value="UCP029416_PTP"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF029416">
        <property type="entry name" value="UCP029416_PTP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00226">
        <property type="entry name" value="LMWPc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52788">
        <property type="entry name" value="SSF52788"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="3" id="KW-0904">Protein phosphatase</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="LMWPc" evidence="4">
        <location>
            <begin position="8"/>
            <end position="114"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001490"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00013064"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022912"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="SMART" id="SM00226"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="ABX36995.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="115" mass="13260" checksum="483B3EC58AD975B6" modified="2008-01-15" version="1">MPRNDNRLKVLFVCSRNQWRSPTAEQVWRRHPALQVRSGGTSAGARHRVSADDVAWADVILVMEERHQSRLKADFGRLLAQKRLHVLDIPDEYRYMDPELVDTLQTAVSALLQLD</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="86" xmlns="http://uniprot.org/uniprot">
    <accession>A9BX11</accession>
    <name>A9BX11_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">Non-specific serine/threonine protein kinase</fullName>
            <ecNumber evidence="3">2.7.11.1</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="9" type="ordered locus">Daci_4365</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="9 10" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="10" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="2">
            <text>ATP + L-seryl-[protein] = ADP + H(+) + O-phospho-L-seryl-[protein]</text>
            <dbReference type="Rhea" id="RHEA:17989"/>
            <dbReference type="Rhea" id="RHEA-COMP:9863"/>
            <dbReference type="Rhea" id="RHEA-COMP:11604"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:29999"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:83421"/>
            <dbReference type="ChEBI" id="CHEBI:456216"/>
            <dbReference type="EC" id="2.7.11.1"/>
        </reaction>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>ATP + L-threonyl-[protein] = ADP + H(+) + O-phospho-L-threonyl-[protein]</text>
            <dbReference type="Rhea" id="RHEA:46608"/>
            <dbReference type="Rhea" id="RHEA-COMP:11060"/>
            <dbReference type="Rhea" id="RHEA-COMP:11605"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:30013"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:61977"/>
            <dbReference type="ChEBI" id="CHEBI:456216"/>
            <dbReference type="EC" id="2.7.11.1"/>
        </reaction>
    </comment>
    <dbReference type="EC" id="2.7.11.1" evidence="3"/>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX36996.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
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    <dbReference type="PRIDE" id="A9BX11"/>
    <dbReference type="EnsemblBacteria" id="ABX36996">
        <property type="protein sequence ID" value="ABX36996"/>
        <property type="gene ID" value="Daci_4365"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_4365"/>
    <dbReference type="eggNOG" id="COG0515">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
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        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
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        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_004435_3_2_4"/>
    <dbReference type="OMA" id="GYPRAHE"/>
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    </dbReference>
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        <property type="project" value="UniProt"/>
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        <property type="project" value="UniProtKB-UniRule"/>
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    <dbReference type="GO" id="GO:0004674">
        <property type="term" value="F:protein serine/threonine kinase activity"/>
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        <property type="project" value="UniProtKB-KW"/>
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        <property type="term" value="P:cyclic nucleotide biosynthetic process"/>
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        <property type="project" value="InterPro"/>
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        <property type="term" value="P:intracellular signal transduction"/>
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        <property type="project" value="InterPro"/>
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        <property type="term" value="P:protein phosphorylation"/>
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        <property type="project" value="InterPro"/>
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    </dbReference>
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    </dbReference>
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        <property type="match status" value="1"/>
    </dbReference>
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    </dbReference>
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        <property type="entry name" value="AAA_16"/>
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    </dbReference>
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        <property type="entry name" value="Nucleotide_cyclase"/>
    </dbReference>
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        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
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    </dbReference>
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        <property type="entry name" value="Protein_kinase_ATP_BS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008271">
        <property type="entry name" value="Ser/Thr_kinase_AS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023889">
        <property type="entry name" value="TOMM_kin_cyc"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011990">
        <property type="entry name" value="TPR-like_helical_dom_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13191">
        <property type="entry name" value="AAA_16"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00211">
        <property type="entry name" value="Guanylate_cyc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00069">
        <property type="entry name" value="Pkinase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00044">
        <property type="entry name" value="CYCc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00220">
        <property type="entry name" value="S_TKc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48452">
        <property type="entry name" value="SSF48452"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55073">
        <property type="entry name" value="SSF55073"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56112">
        <property type="entry name" value="SSF56112"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR03903">
        <property type="entry name" value="TOMM_kin_cyc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50125">
        <property type="entry name" value="GUANYLATE_CYCLASE_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00107">
        <property type="entry name" value="PROTEIN_KINASE_ATP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50011">
        <property type="entry name" value="PROTEIN_KINASE_DOM"/>
        <property type="match status" value="1"/>
    </dbReference>
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        <property type="entry name" value="PROTEIN_KINASE_ST"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="5 6" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="9" id="KW-0418">Kinase</keyword>
    <keyword evidence="4 6" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="9" id="KW-0723">Serine/threonine-protein kinase</keyword>
    <keyword evidence="9" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Protein kinase" evidence="7">
        <location>
            <begin position="62"/>
            <end position="324"/>
        </location>
    </feature>
    <feature type="domain" description="Guanylate cyclase" evidence="8">
        <location>
            <begin position="353"/>
            <end position="503"/>
        </location>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <position position="91"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
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        <source>
            <dbReference type="ARBA" id="ARBA00000775"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00001433"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00012513"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU10141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="PROSITE" id="PS50011"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="PROSITE" id="PS50125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="ABX36996.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="1398" mass="152431" checksum="6A903EB7620A92F9" modified="2008-01-15" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="67" xmlns="http://uniprot.org/uniprot">
    <accession>A9BX92</accession>
    <name>A9BX92_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="7">Extracellular solute-binding protein family 3</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ordered locus">Daci_5539</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="8" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1 3">Belongs to the bacterial solute-binding protein 3 family.</text>
    </comment>
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        <property type="protein sequence ID" value="ABX38168.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
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        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_5539"/>
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    <dbReference type="EnsemblBacteria" id="ABX38168">
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        <property type="gene ID" value="Daci_5539"/>
    </dbReference>
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    <dbReference type="OMA" id="KVEFSVM"/>
    <dbReference type="Proteomes" id="UP000000784">
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    </dbReference>
    <dbReference type="GO" id="GO:0016020">
        <property type="term" value="C:membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015276">
        <property type="term" value="F:ligand-gated ion channel activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
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        <property type="entry name" value="Iontro_rcpt"/>
    </dbReference>
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        <property type="entry name" value="SBP_3_CS"/>
    </dbReference>
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    </dbReference>
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        <property type="match status" value="1"/>
    </dbReference>
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        <property type="entry name" value="PBPb"/>
        <property type="match status" value="1"/>
    </dbReference>
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        <property type="entry name" value="PBPe"/>
        <property type="match status" value="1"/>
    </dbReference>
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        <property type="entry name" value="SBP_BACTERIAL_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 4" id="KW-0732">Signal</keyword>
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        <location>
            <begin position="1"/>
            <end position="20"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5002735182" evidence="4">
        <location>
            <begin position="21"/>
            <end position="268"/>
        </location>
    </feature>
    <feature type="domain" description="PBPb" evidence="5">
        <location>
            <begin position="42"/>
            <end position="265"/>
        </location>
    </feature>
    <feature type="domain" description="PBPe" evidence="6">
        <location>
            <begin position="42"/>
            <end position="264"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00010333"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022729"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="RuleBase" id="RU003744"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="SMART" id="SM00062"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="SMART" id="SM00079"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="ABX38168.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="268" mass="28772" checksum="FBF7E6BCC57339D0" modified="2008-01-15" version="1">MKKRTLLAMVALSALLAACGKNESASTAAAPVAAPVPAAMTKLVIGLDDNFPPMGFRDDKNEIVGFDIDMAREAAKRMNVEVDFKPIDWSAKEAELVGKRVDALWNGLTITEERKKNIAFTAPYMENHQIIIVRANSDIKDKAGLAGKVVGAQDGSSAVDAIKKDAAVAASFKDLKTFGDNITALMDLSAGRLDAVVVDEVVGRFHVAKKAGEYLVLEDNFGTEDYGVGLRKEDTEVLGKLEAALAEMKKDGKAAEIASKWFGKDIIK</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2021-09-29" version="42" xmlns="http://uniprot.org/uniprot">
    <accession>A9BXI3</accession>
    <name>A9BXI3_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Daci_5630</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="2" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX38259.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012207428.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_5630"/>
    <dbReference type="EnsemblBacteria" id="ABX38259">
        <property type="protein sequence ID" value="ABX38259"/>
        <property type="gene ID" value="Daci_5630"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_5630"/>
    <dbReference type="eggNOG" id="ENOG50335E1">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_1988982_0_0_4"/>
    <dbReference type="OMA" id="DLWCALA"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ABX38259.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="121" mass="12893" checksum="E3010FBC68BD6696" modified="2008-01-15" version="1">MASDHALQAGRLWDLWCALALRHVALGGACACGAGGISLRLEDFELDIVDYLQDGGERCEQPEVAAWFRARPAPGQGAQPLRGLLDALGSDEVPQAVAQWALARLERTLRSFAEVHGGVAS</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="67" xmlns="http://uniprot.org/uniprot">
    <accession>A9BXJ3</accession>
    <name>A9BXJ3_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">Glutathione transferase</fullName>
            <ecNumber evidence="2">2.5.1.18</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="6" type="ordered locus">Daci_5640</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="7" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>glutathione + RX = a halide anion + an S-substituted glutathione + H(+)</text>
            <dbReference type="Rhea" id="RHEA:16437"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:16042"/>
            <dbReference type="ChEBI" id="CHEBI:17792"/>
            <dbReference type="ChEBI" id="CHEBI:57925"/>
            <dbReference type="ChEBI" id="CHEBI:90779"/>
            <dbReference type="EC" id="2.5.1.18"/>
        </reaction>
    </comment>
    <dbReference type="EC" id="2.5.1.18" evidence="2"/>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX38269.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_5640"/>
    <dbReference type="PRIDE" id="A9BXJ3"/>
    <dbReference type="EnsemblBacteria" id="ABX38269">
        <property type="protein sequence ID" value="ABX38269"/>
        <property type="gene ID" value="Daci_5640"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_5640"/>
    <dbReference type="eggNOG" id="COG0625">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_011226_9_3_4"/>
    <dbReference type="OMA" id="ESMVICE"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016740">
        <property type="term" value="F:transferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006749">
        <property type="term" value="P:glutathione metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010987">
        <property type="entry name" value="Glutathione-S-Trfase_C-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036282">
        <property type="entry name" value="Glutathione-S-Trfase_C_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR040079">
        <property type="entry name" value="Glutathione_S-Trfase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004045">
        <property type="entry name" value="Glutathione_S-Trfase_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045073">
        <property type="entry name" value="Omega/Tau-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036249">
        <property type="entry name" value="Thioredoxin-like_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13417">
        <property type="entry name" value="GST_N_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SFLD" id="SFLDS00019">
        <property type="entry name" value="Glutathione_Transferase_(cytos"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SFLD" id="SFLDG01152">
        <property type="entry name" value="Main.3:_Omega-_and_Tau-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47616">
        <property type="entry name" value="SSF47616"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52833">
        <property type="entry name" value="SSF52833"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50405">
        <property type="entry name" value="GST_CTER"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50404">
        <property type="entry name" value="GST_NTER"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 6" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="GST N-terminal" evidence="4">
        <location>
            <begin position="2"/>
            <end position="85"/>
        </location>
    </feature>
    <feature type="domain" description="GST C-terminal" evidence="5">
        <location>
            <begin position="90"/>
            <end position="213"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00000710"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00012452"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="PROSITE" id="PS50404"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="PROSITE" id="PS50405"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="ABX38269.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="225" mass="25208" checksum="FF7DF7FC1A471905" modified="2008-01-15" version="1">MTALTLISHPLCPFVQRAVIVLLEKGVEFDRIDVDLSAKPDWFLALSPTGKVPVLKVRQANAEDAILFESVVICEYLNETQGGAPMYPVDALPRAQHRAWIEFAAQTFAEGWQFLHARDSATADAKRAAFRERLGKLESEMDTGPFFAGQAFGMVDAVYAPLFRYFDITPATVAYQIFDGLPRISAWRSALAERPSVRHAVVEDYADRFQRHLREQGSFIAVSSR</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="74" xmlns="http://uniprot.org/uniprot">
    <accession>A9BXM9</accession>
    <name>A9BXM9_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="4">3-oxoacyl-[acyl-carrier-protein] synthase 2</fullName>
            <ecNumber evidence="3">2.3.1.179</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="11">3-oxoacyl-[acyl-carrier-protein] synthase II</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="10">Beta-ketoacyl-ACP synthase II</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="14" type="ordered locus">Daci_5677</name>
    </gene>
    <organism evidence="14 15">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="14 15" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="15">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="15" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="15">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="pathway">
        <text evidence="1">Lipid metabolism; fatty acid biosynthesis.</text>
    </comment>
    <comment type="similarity">
        <text evidence="2 12">Belongs to the thiolase-like superfamily. Beta-ketoacyl-ACP synthases family.</text>
    </comment>
    <dbReference type="EC" id="2.3.1.179" evidence="3"/>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX38305.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_5677"/>
    <dbReference type="PRIDE" id="A9BXM9"/>
    <dbReference type="EnsemblBacteria" id="ABX38305">
        <property type="protein sequence ID" value="ABX38305"/>
        <property type="gene ID" value="Daci_5677"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_5677"/>
    <dbReference type="eggNOG" id="COG0304">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_000022_69_2_4"/>
    <dbReference type="OMA" id="YRYIKYK"/>
    <dbReference type="UniPathway" id="UPA00094"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004315">
        <property type="term" value="F:3-oxoacyl-[acyl-carrier-protein] synthase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006633">
        <property type="term" value="P:fatty acid biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniPathway"/>
    </dbReference>
    <dbReference type="CDD" id="cd00834">
        <property type="entry name" value="KAS_I_II"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.47.10">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017568">
        <property type="entry name" value="3-oxoacyl-ACP_synth-2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000794">
        <property type="entry name" value="Beta-ketoacyl_synthase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018201">
        <property type="entry name" value="Ketoacyl_synth_AS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014031">
        <property type="entry name" value="Ketoacyl_synth_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014030">
        <property type="entry name" value="Ketoacyl_synth_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020841">
        <property type="entry name" value="PKS_Beta-ketoAc_synthase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016039">
        <property type="entry name" value="Thiolase-like"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11712">
        <property type="entry name" value="PTHR11712"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00109">
        <property type="entry name" value="ketoacyl-synt"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02801">
        <property type="entry name" value="Ketoacyl-synt_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00825">
        <property type="entry name" value="PKS_KS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53901">
        <property type="entry name" value="SSF53901"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR03150">
        <property type="entry name" value="fabF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00606">
        <property type="entry name" value="B_KETOACYL_SYNTHASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="9" id="KW-0012">Acyltransferase</keyword>
    <keyword evidence="8" id="KW-0275">Fatty acid biosynthesis</keyword>
    <keyword evidence="6" id="KW-0276">Fatty acid metabolism</keyword>
    <keyword evidence="5" id="KW-0444">Lipid biosynthesis</keyword>
    <keyword evidence="7" id="KW-0443">Lipid metabolism</keyword>
    <keyword evidence="15" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="12" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="PKS_KS" evidence="13">
        <location>
            <begin position="77"/>
            <end position="495"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00005194"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00008467"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00012356"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00014657"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022516"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022832"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023098"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00023160"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00023315"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00029675"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="ARBA" id="ARBA00032171"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="12">
        <source>
            <dbReference type="RuleBase" id="RU003694"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="13">
        <source>
            <dbReference type="SMART" id="SM00825"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="14">
        <source>
            <dbReference type="EMBL" id="ABX38305.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="15">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="495" mass="51268" checksum="D3AFB044DE1F74A3" modified="2008-01-15" version="1">MTAIIINQPLPWPVRHVLQGLCTLQGRTDECLFTSAQPAAWARSDLRTVCQERLMNTAHTAHTSQTSHTAAPLPRRVVITGMGMISPLGRGTELAWRRLLSGASGLSRLPEDLAPDVPGQVAGQVPDLARDPEGGWDIDAVVSPKDQRKMDRFIPLALDASDQALAQAGWQPASEQERTRTACIIASGIGGFGAIAQAVRTTDSRGVSRLSPFTVPSFLVNLAAGHVSIRHGLKGPLGAPVTACAASVQAVGDGLRMIRSGEADVALCGGAEAAIDRVSLGAFAAAKALSTGYNDRPEEASRPFDTGRDGFVMGEGAGALVLEGLDHALARGAVPLAEVVGYGTSADAYHITSGPEDGDGARRSMAQALAMAGLSPDQLQYLNAHATSTPVGDRGELAAMRSLFGEGSGVAISSTKSATGHLLGAAGAVAAIFTVLALRDQMAPATRNLVEPDPLAQGLDLIAGAARPWAMEHALVNGFGFGGVNASLVLRRWQG</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="68" xmlns="http://uniprot.org/uniprot">
    <accession>A9BXN1</accession>
    <name>A9BXN1_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Amidohydrolase</fullName>
            <ecNumber evidence="3">3.5.1.32</ecNumber>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Daci_5679</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="4" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EC" id="3.5.1.32" evidence="3"/>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX38307.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012207476.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_5679"/>
    <dbReference type="PRIDE" id="A9BXN1"/>
    <dbReference type="EnsemblBacteria" id="ABX38307">
        <property type="protein sequence ID" value="ABX38307"/>
        <property type="gene ID" value="Daci_5679"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_5679"/>
    <dbReference type="eggNOG" id="COG1473">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_023257_1_1_4"/>
    <dbReference type="OMA" id="VMIHQHA"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0047980">
        <property type="term" value="F:hippurate hydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017439">
        <property type="entry name" value="Amidohydrolase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036264">
        <property type="entry name" value="Bact_exopeptidase_dim_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002933">
        <property type="entry name" value="Peptidase_M20"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011650">
        <property type="entry name" value="Peptidase_M20_dimer"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11014">
        <property type="entry name" value="PTHR11014"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07687">
        <property type="entry name" value="M20_dimer"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01546">
        <property type="entry name" value="Peptidase_M20"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF005962">
        <property type="entry name" value="Pept_M20D_amidohydro"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55031">
        <property type="entry name" value="SSF55031"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01891">
        <property type="entry name" value="amidohydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1 3" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="M20_dimer" evidence="2">
        <location>
            <begin position="198"/>
            <end position="294"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF07687"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ABX38307.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="408" mass="43516" checksum="C9CC5DD5300819FC" modified="2008-01-15" version="1">MEATRYKAGGRAFAQIAQYHPELTALRRELHAHPELGFEERFTAARVKEALRQCGVDEIHEGLGTTGLVAVIRGQGHSSGAMVGLRADMDALPMVEHNEFPWKSGKQGLMHGCGHDGHTTMLVGAARYLAATRRFDGSAVLVFQPAEEGRGGARAMIADGLFDRFPMQAVYAMHNWPAMRAGTVGINMGAMMAAADRITIEITGRGGHGAHPYQTVDVVLAAAHITTAVQSIVSRNVRAIDSAVISLCAVQAGDLGAFSVMPGTATLVGTVRTFDPAVQDRVEQRLQELCSAVALGLGATAKVNYERIYPATINSPTEAAFAADVAQSLVGVENLDRQLEPSMGAEDFSFMLQHKPGAYLRLGQSTGAQPGVPLHSSRYDFNDEVLPLGAALHASLIEQAMPLHSQDV</sequence>
</entry>
<entry dataset="Swiss-Prot" created="2008-09-02" modified="2022-08-03" version="65" xmlns="http://uniprot.org/uniprot">
    <accession>A9BXV6</accession>
    <name>TTCA_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">tRNA-cytidine(32) 2-sulfurtransferase</fullName>
            <ecNumber evidence="1">2.8.1.-</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="1">Two-thiocytidine biosynthesis protein A</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="1">tRNA 2-thiocytidine biosynthesis protein TtcA</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="1" type="primary">ttcA</name>
        <name type="ordered locus">Daci_1247</name>
    </gene>
    <organism>
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference key="1">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain>DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="1">Catalyzes the ATP-dependent 2-thiolation of cytidine in position 32 of tRNA, to form 2-thiocytidine (s(2)C32). The sulfur atoms are provided by the cysteine/cysteine desulfurase (IscS) system.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>AH2 + ATP + cytidine(32) in tRNA + S-sulfanyl-L-cysteinyl-[cysteine desulfurase] = 2-thiocytidine(32) in tRNA + A + AMP + diphosphate + H(+) + L-cysteinyl-[cysteine desulfurase]</text>
            <dbReference type="Rhea" id="RHEA:57048"/>
            <dbReference type="Rhea" id="RHEA-COMP:10288"/>
            <dbReference type="Rhea" id="RHEA-COMP:12157"/>
            <dbReference type="Rhea" id="RHEA-COMP:12158"/>
            <dbReference type="Rhea" id="RHEA-COMP:14821"/>
            <dbReference type="ChEBI" id="CHEBI:13193"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:17499"/>
            <dbReference type="ChEBI" id="CHEBI:29950"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:33019"/>
            <dbReference type="ChEBI" id="CHEBI:61963"/>
            <dbReference type="ChEBI" id="CHEBI:82748"/>
            <dbReference type="ChEBI" id="CHEBI:141453"/>
            <dbReference type="ChEBI" id="CHEBI:456215"/>
        </reaction>
        <physiologicalReaction direction="left-to-right" evidence="1">
            <dbReference type="Rhea" id="RHEA:57049"/>
        </physiologicalReaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </cofactor>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>[4Fe-4S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:49883"/>
        </cofactor>
        <text evidence="1">Binds 1 [4Fe-4S] cluster per subunit. The cluster is chelated by three Cys residues, the fourth Fe has a free coordination site that may bind a sulfur atom transferred from the persulfide of IscS.</text>
    </comment>
    <comment type="pathway">
        <text evidence="1">tRNA modification.</text>
    </comment>
    <comment type="subunit">
        <text evidence="1">Homodimer.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="miscellaneous">
        <text evidence="1">The thiolation reaction likely consists of two steps: a first activation step by ATP to form an adenylated intermediate of the target base of tRNA, and a second nucleophilic substitution step of the sulfur (S) atom supplied by the hydrosulfide attached to the Fe-S cluster.</text>
    </comment>
    <comment type="similarity">
        <text evidence="1">Belongs to the TtcA family.</text>
    </comment>
    <dbReference type="EC" id="2.8.1.-" evidence="1"/>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX33891.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012203177.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A9BXV6"/>
    <dbReference type="SMR" id="A9BXV6"/>
    <dbReference type="STRING" id="398578.Daci_1247"/>
    <dbReference type="PRIDE" id="A9BXV6"/>
    <dbReference type="EnsemblBacteria" id="ABX33891">
        <property type="protein sequence ID" value="ABX33891"/>
        <property type="gene ID" value="Daci_1247"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_1247"/>
    <dbReference type="eggNOG" id="COG0037">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_026481_0_0_4"/>
    <dbReference type="OMA" id="MNLDQKQ"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051539">
        <property type="term" value="F:4 iron, 4 sulfur cluster binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000287">
        <property type="term" value="F:magnesium ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016783">
        <property type="term" value="F:sulfurtransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000049">
        <property type="term" value="F:tRNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0034227">
        <property type="term" value="P:tRNA thio-modification"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.620">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01850">
        <property type="entry name" value="TtcA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014729">
        <property type="entry name" value="Rossmann-like_a/b/a_fold"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011063">
        <property type="entry name" value="TilS/TtcA_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012089">
        <property type="entry name" value="tRNA_Cyd_32_2_STrfase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035107">
        <property type="entry name" value="tRNA_thiolation_TtcA_Ctu1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01171">
        <property type="entry name" value="ATP_bind_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF004976">
        <property type="entry name" value="ATPase_YdaO"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword id="KW-0004">4Fe-4S</keyword>
    <keyword id="KW-0067">ATP-binding</keyword>
    <keyword id="KW-0963">Cytoplasm</keyword>
    <keyword id="KW-0408">Iron</keyword>
    <keyword id="KW-0411">Iron-sulfur</keyword>
    <keyword id="KW-0460">Magnesium</keyword>
    <keyword id="KW-0479">Metal-binding</keyword>
    <keyword id="KW-0547">Nucleotide-binding</keyword>
    <keyword id="KW-1185">Reference proteome</keyword>
    <keyword id="KW-0694">RNA-binding</keyword>
    <keyword id="KW-0808">Transferase</keyword>
    <keyword id="KW-0819">tRNA processing</keyword>
    <keyword id="KW-0820">tRNA-binding</keyword>
    <feature type="chain" id="PRO_0000348711" description="tRNA-cytidine(32) 2-sulfurtransferase">
        <location>
            <begin position="1"/>
            <end position="313"/>
        </location>
    </feature>
    <feature type="short sequence motif" description="PP-loop motif" evidence="1">
        <location>
            <begin position="60"/>
            <end position="65"/>
        </location>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <position position="135"/>
        </location>
        <ligand>
            <name>[4Fe-4S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:49883"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <position position="138"/>
        </location>
        <ligand>
            <name>[4Fe-4S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:49883"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <position position="226"/>
        </location>
        <ligand>
            <name>[4Fe-4S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:49883"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000255" key="1">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01850"/>
        </source>
    </evidence>
    <sequence length="313" mass="35393" checksum="90F3F3CDC14D2AAB" modified="2008-01-15" version="1">MFNNPDFSDIATCDLEEPKNSIKIEREQVKLEKRLCREVGRAITDFNMIEEGDKIMVCMSGGKDSYTMLDVLRKLQKRAPVKFELVAVNLDQKQPGFPDHVLPEYFKSIGVDYHIETQDTYSVVKRVVPEGKTTCGLCSRLRRAILYKVADELGCTKVALGHHRDDIVQTLMLNMFYGGRMKGMPPKLVSDDGKHVVIRPLCYVPEKDTVRWAQYQNFPIIPCNLCGSQDGLQRVAVGELLREWDKKFPGRVESMFRAMGHIVTTHMMDPELHDFKNAKATGIADPNGDMAFDHEEMPVSASLPGLQVVQLSS</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="80" xmlns="http://uniprot.org/uniprot">
    <accession>A9BXW3</accession>
    <name>A9BXW3_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="6">Thioredoxin</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ordered locus">Daci_1254</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="7" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the thioredoxin family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX33898.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012203184.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_1254"/>
    <dbReference type="PRIDE" id="A9BXW3"/>
    <dbReference type="EnsemblBacteria" id="ABX33898">
        <property type="protein sequence ID" value="ABX33898"/>
        <property type="gene ID" value="Daci_1254"/>
    </dbReference>
    <dbReference type="GeneID" id="60685811"/>
    <dbReference type="KEGG" id="dac:Daci_1254"/>
    <dbReference type="eggNOG" id="COG3118">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_090389_10_0_4"/>
    <dbReference type="OMA" id="NPCRMLT"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015035">
        <property type="term" value="F:protein-disulfide reductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005746">
        <property type="entry name" value="Thioredoxin"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036249">
        <property type="entry name" value="Thioredoxin-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017937">
        <property type="entry name" value="Thioredoxin_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013766">
        <property type="entry name" value="Thioredoxin_domain"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00085">
        <property type="entry name" value="Thioredoxin"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52833">
        <property type="entry name" value="SSF52833"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01068">
        <property type="entry name" value="thioredoxin"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00194">
        <property type="entry name" value="THIOREDOXIN_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51352">
        <property type="entry name" value="THIOREDOXIN_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-1015">Disulfide bond</keyword>
    <keyword evidence="4" id="KW-0676">Redox-active center</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0732">Signal</keyword>
    <feature type="domain" description="Thioredoxin" evidence="5">
        <location>
            <begin position="20"/>
            <end position="144"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00008987"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022729"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023157"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023284"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="PROSITE" id="PS51352"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="ABX33898.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="144" mass="15473" checksum="20C01A4F9EB80C59" modified="2008-01-15" version="1">MSDKLHFVCPHCHTTNRIAADQLGSAPDCGSCHQPLVTGQPVALDAQSFARHVGRSQAPVVVDFWAPWCGPCRMMAPAFEQAAQALAPGVQLAKLDTEAHPQAAAPWNIRSIPTMVVFKEGREIARVSGALPAGEIVRWVRSVV</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="43" xmlns="http://uniprot.org/uniprot">
    <accession>A9BY17</accession>
    <name>A9BY17_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_1308</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX33952.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012203238.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_1308"/>
    <dbReference type="PRIDE" id="A9BY17"/>
    <dbReference type="EnsemblBacteria" id="ABX33952">
        <property type="protein sequence ID" value="ABX33952"/>
        <property type="gene ID" value="Daci_1308"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_1308"/>
    <dbReference type="eggNOG" id="ENOG5030UJF">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_108405_0_0_4"/>
    <dbReference type="OMA" id="RMNDNID"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="164"/>
            <end position="222"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX33952.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="222" mass="23943" checksum="BB2FCDB7EFE7A843" modified="2008-01-15" version="1">MMQRNLLGAAEGVMLLALCGALAWSWLTPQLHLRQTGWTPPEPLKSNLQALMPPPTAAPGRGEEERWLLTMQERPLFSMSRKPPPPVKKVEAPPPEPPDVWKDASVLGTFQGQASGAIVRLEGKDQRLMLNQSLGGWKLVGIQGRYIELERAGTKRTIDLKRAALDKGPNLPAGARAPTQRPSEPVAAQAAPEPAAADAPAPPQRTSRAVFGGSRAQRADKP</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="58" xmlns="http://uniprot.org/uniprot">
    <accession>A9BY75</accession>
    <name>A9BY75_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Phosphomethylpyrimidine kinase type-1</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ordered locus">Daci_1570</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="6" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="2">
            <text>4-amino-2-methyl-5-(phosphooxymethyl)pyrimidine + ATP = 4-amino-2-methyl-5-(diphosphooxymethyl)pyrimidine + ADP</text>
            <dbReference type="Rhea" id="RHEA:19893"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:57841"/>
            <dbReference type="ChEBI" id="CHEBI:58354"/>
            <dbReference type="ChEBI" id="CHEBI:456216"/>
            <dbReference type="EC" id="2.7.4.7"/>
        </reaction>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>4-amino-5-hydroxymethyl-2-methylpyrimidine + ATP = 4-amino-2-methyl-5-(phosphooxymethyl)pyrimidine + ADP + H(+)</text>
            <dbReference type="Rhea" id="RHEA:23096"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:16892"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:58354"/>
            <dbReference type="ChEBI" id="CHEBI:456216"/>
            <dbReference type="EC" id="2.7.1.49"/>
        </reaction>
    </comment>
    <comment type="pathway">
        <text evidence="3">Cofactor biosynthesis; thiamine diphosphate biosynthesis; 4-amino-2-methyl-5-diphosphomethylpyrimidine from 5-amino-1-(5-phospho-D-ribosyl)imidazole: step 3/3.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX34214.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012203499.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_1570"/>
    <dbReference type="PRIDE" id="A9BY75"/>
    <dbReference type="EnsemblBacteria" id="ABX34214">
        <property type="protein sequence ID" value="ABX34214"/>
        <property type="gene ID" value="Daci_1570"/>
    </dbReference>
    <dbReference type="GeneID" id="60686108"/>
    <dbReference type="KEGG" id="dac:Daci_1570"/>
    <dbReference type="eggNOG" id="COG0351">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_020520_0_2_4"/>
    <dbReference type="OMA" id="WRWLLPD"/>
    <dbReference type="UniPathway" id="UPA00060">
        <property type="reaction ID" value="UER00138"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008972">
        <property type="term" value="F:phosphomethylpyrimidine kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016310">
        <property type="term" value="P:phosphorylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009228">
        <property type="term" value="P:thiamine biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009229">
        <property type="term" value="P:thiamine diphosphate biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniPathway"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.1190.20">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045029">
        <property type="entry name" value="HMP/HMP-P_kinase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013749">
        <property type="entry name" value="PM/HMP-P_kinase-1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029056">
        <property type="entry name" value="Ribokinase-like"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR20858">
        <property type="entry name" value="PTHR20858"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08543">
        <property type="entry name" value="Phos_pyr_kin"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53613">
        <property type="entry name" value="SSF53613"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="5" id="KW-0418">Kinase</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="5" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Phos_pyr_kin" evidence="4">
        <location>
            <begin position="31"/>
            <end position="272"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00000151"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00000565"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00004769"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="Pfam" id="PF08543"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="ABX34214.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="318" mass="33876" checksum="5A5BC3EAC621BBDC" modified="2008-01-15" version="1">MALNPSNSPSPDTELVDETAPVCVLVFNASDPSGAGGLSADIATIASVGGHPLPVVTGAYARDSAKIFEHFPFDDEAVAEQARAVLEDIPVSAIKVGFVGSPGNLAAIAEIASDYPDIPIVCYMPDLSWWEEDPLDQYMDALKELVLPQTSVLVGSHSTLCRWLLPDWSNSRSPTARDIAMAAEALEVPYVLVTGIPLPDQFVDNVLATAQSVLGNSKYEMFDATFTGSGDTLSAALAALVASGNDLGLATQEALEYLDRSLDSGFRPGMGHFIPDRMFWAQPEPEDEDAEAAEPLTELDADTQAIEGFVMPPHDTKH</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="90" xmlns="http://uniprot.org/uniprot">
    <accession>A9BYA2</accession>
    <name>A9BYA2_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Two component transcriptional regulator, winged helix family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ordered locus">Daci_1597</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="6" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX34241.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012203526.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_1597"/>
    <dbReference type="PRIDE" id="A9BYA2"/>
    <dbReference type="EnsemblBacteria" id="ABX34241">
        <property type="protein sequence ID" value="ABX34241"/>
        <property type="gene ID" value="Daci_1597"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_1597"/>
    <dbReference type="eggNOG" id="COG0745">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_000445_30_1_4"/>
    <dbReference type="OMA" id="HATIYDR"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000160">
        <property type="term" value="P:phosphorelay signal transduction system"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006355">
        <property type="term" value="P:regulation of transcription, DNA-templated"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd00383">
        <property type="entry name" value="trans_reg_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011006">
        <property type="entry name" value="CheY-like_superfamily"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001867">
        <property type="entry name" value="OmpR/PhoB-type_DNA-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001789">
        <property type="entry name" value="Sig_transdc_resp-reg_receiver"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR039420">
        <property type="entry name" value="WalR-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR48111">
        <property type="entry name" value="PTHR48111"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00072">
        <property type="entry name" value="Response_reg"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00486">
        <property type="entry name" value="Trans_reg_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00448">
        <property type="entry name" value="REC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00862">
        <property type="entry name" value="Trans_reg_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52172">
        <property type="entry name" value="SSF52172"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51755">
        <property type="entry name" value="OMPR_PHOB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50110">
        <property type="entry name" value="RESPONSE_REGULATORY"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="1" id="KW-0597">Phosphoprotein</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Response regulatory" evidence="3">
        <location>
            <begin position="2"/>
            <end position="121"/>
        </location>
    </feature>
    <feature type="domain" description="OmpR/PhoB-type" evidence="4">
        <location>
            <begin position="129"/>
            <end position="223"/>
        </location>
    </feature>
    <feature type="DNA-binding region" description="OmpR/PhoB-type" evidence="2">
        <location>
            <begin position="129"/>
            <end position="223"/>
        </location>
    </feature>
    <feature type="modified residue" description="4-aspartylphosphate" evidence="1">
        <location>
            <position position="56"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00169"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU01091"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="PROSITE" id="PS50110"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="PROSITE" id="PS51755"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="ABX34241.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="224" mass="24293" checksum="FCE31B26F6DADCE3" modified="2008-01-15" version="1">MRLLLVEDDAMIGEAVQTLLRGEGHAVDWVRDGLQADAALCPGPGGGHGYDMVLLDLGLPGQDGLQVLRHLRGRRDRTPVLVATARDAVRDRIAGLDAGADDYVVKPYDLDELLARLRALARRASGGSDPLYEREGVRLNPATREASVDGRDVVLSGREWAVLETLLARPGSTLSRQQIEDKLYGWGDEVSSNAIEVYIHGLRKKLGAGLILNVRGVGYMVPKP</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="48" xmlns="http://uniprot.org/uniprot">
    <accession>A9BYE2</accession>
    <name>A9BYE2_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Phage protein, HK97 gp10 family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Daci_1638</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="2" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX34281.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012203566.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_1638"/>
    <dbReference type="PRIDE" id="A9BYE2"/>
    <dbReference type="EnsemblBacteria" id="ABX34281">
        <property type="protein sequence ID" value="ABX34281"/>
        <property type="gene ID" value="Daci_1638"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_1638"/>
    <dbReference type="eggNOG" id="ENOG5033GVG">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_127674_1_0_4"/>
    <dbReference type="OMA" id="RAENNKV"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010064">
        <property type="entry name" value="HK97-gp10_tail"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04883">
        <property type="entry name" value="HK97-gp10_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01725">
        <property type="entry name" value="phge_HK97_gp10"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ABX34281.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="152" mass="16630" checksum="15CCCA64456529E5" modified="2008-01-15" version="1">MAETWKKVEGLSALAKRMEALGDDMTRKTSVSATGAGARVIRNLAKQKAPIAPADYEVEGQKVPRGNLPKQIVVKQVPKSKRRLTSEHVVAVRGKRKDGYANRVGQLQEFGTVKQDPNPFMRPAFDEGKGPALDVIVKTLKRRVAKAEKGGK</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="30" xmlns="http://uniprot.org/uniprot">
    <accession>A9BYJ2</accession>
    <name>A9BYJ2_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Daci_1895</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="2" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX34535.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="PRIDE" id="A9BYJ2"/>
    <dbReference type="EnsemblBacteria" id="ABX34535">
        <property type="protein sequence ID" value="ABX34535"/>
        <property type="gene ID" value="Daci_1895"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_1895"/>
    <dbReference type="HOGENOM" id="CLU_122308_0_0_4"/>
    <dbReference type="OMA" id="PTWRQAM"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ABX34535.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="191" mass="21502" checksum="0993AE435E03639A" modified="2008-01-15" version="1">MSRFLGQMRHRASVSNGFGRDGLTRKDGRTSVYVLRTSRPPVARRTVACGSLDSYRNQDMHPLTAAQASSPQPPFLPTWRQAMHASLGLVHSTLQQLIELMVDDPDRDDSEVDVDCAVELALEHIKRMSVQQHADRYAFEVEWIKATAALRLAQGAFGRPQSRFGLRLKDAIQQLEMLPELVEFVDQDDGE</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="37" xmlns="http://uniprot.org/uniprot">
    <accession>A9BYK8</accession>
    <name>A9BYK8_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Daci_1911</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="2" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX34551.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012203836.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_1911"/>
    <dbReference type="PRIDE" id="A9BYK8"/>
    <dbReference type="EnsemblBacteria" id="ABX34551">
        <property type="protein sequence ID" value="ABX34551"/>
        <property type="gene ID" value="Daci_1911"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_1911"/>
    <dbReference type="eggNOG" id="ENOG5033JZT">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_882015_0_0_4"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ABX34551.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="346" mass="37176" checksum="188F8A9D9ED749D7" modified="2008-01-15" version="1">MTATKIQPGDDLHLTSLMSPHSLNFVTGADRAALLAYGRDVFAAARNSKCLAQIEEPAAPAAVAPRGEYPHEQMDAMALARYKVVPSHASMLWSHAVVAGDGAQQLYVGREVECQNMARKFAGAFLDGAFAFHSMAAAPTAQAAPALEAPAAPVTLMTEDQASRWAWDQIREEVGTKGWTAGDSSNFFGFFLHGWNYRGQYELQRPAALLARAALAAAPQAPAAPAEAQRLAQFLQRMRTHLGSCRESAGTYNQQAWDDYERAWTMLLGMAAPAAPAVDASDDTALLDAMQRHRIALVPEFEGPWDAEIFNDEAEAHPIASGNTPREALRAALAAQAAAKGEHDHG</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="78" xmlns="http://uniprot.org/uniprot">
    <accession>A9BYR5</accession>
    <name>A9BYR5_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="7">Tryptophan 2,3-dioxygenase</fullName>
            <shortName evidence="7">TDO</shortName>
            <ecNumber evidence="7">1.13.11.11</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="7">Tryptamin 2,3-dioxygenase</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="7">Tryptophan oxygenase</fullName>
            <shortName evidence="7">TO</shortName>
            <shortName evidence="7">TRPO</shortName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="7">Tryptophan pyrrolase</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="7">Tryptophanase</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="7" type="primary">kynA</name>
        <name evidence="8" type="ordered locus">Daci_2170</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="9" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="7">Heme-dependent dioxygenase that catalyzes the oxidative cleavage of the L-tryptophan (L-Trp) pyrrole ring and converts L-tryptophan to N-formyl-L-kynurenine. Catalyzes the oxidative cleavage of the indole moiety.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="7">
            <text>L-tryptophan + O2 = N-formyl-L-kynurenine</text>
            <dbReference type="Rhea" id="RHEA:24536"/>
            <dbReference type="ChEBI" id="CHEBI:15379"/>
            <dbReference type="ChEBI" id="CHEBI:57912"/>
            <dbReference type="ChEBI" id="CHEBI:58629"/>
            <dbReference type="EC" id="1.13.11.11"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="7">
            <name>heme</name>
            <dbReference type="ChEBI" id="CHEBI:30413"/>
        </cofactor>
        <text evidence="7">Binds 1 heme group per subunit.</text>
    </comment>
    <comment type="pathway">
        <text evidence="7">Amino-acid degradation; L-tryptophan degradation via kynurenine pathway; L-kynurenine from L-tryptophan: step 1/2.</text>
    </comment>
    <comment type="subunit">
        <text evidence="7">Homotetramer.</text>
    </comment>
    <comment type="similarity">
        <text evidence="7">Belongs to the tryptophan 2,3-dioxygenase family.</text>
    </comment>
    <dbReference type="EC" id="1.13.11.11" evidence="7"/>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX34810.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012204093.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_2170"/>
    <dbReference type="PRIDE" id="A9BYR5"/>
    <dbReference type="EnsemblBacteria" id="ABX34810">
        <property type="protein sequence ID" value="ABX34810"/>
        <property type="gene ID" value="Daci_2170"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_2170"/>
    <dbReference type="eggNOG" id="COG3483">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_063240_0_0_4"/>
    <dbReference type="OMA" id="MLFIVVH"/>
    <dbReference type="UniPathway" id="UPA00333">
        <property type="reaction ID" value="UER00453"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0020037">
        <property type="term" value="F:heme binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004833">
        <property type="term" value="F:tryptophan 2,3-dioxygenase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0019441">
        <property type="term" value="P:tryptophan catabolic process to kynurenine"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniPathway"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01972">
        <property type="entry name" value="T23O"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037217">
        <property type="entry name" value="Trp/Indoleamine_2_3_dOase-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017485">
        <property type="entry name" value="Trp_2-3-dOase_bac"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004981">
        <property type="entry name" value="Trp_2_3_dOase"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10138">
        <property type="entry name" value="PTHR10138"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03301">
        <property type="entry name" value="Trp_dioxygenase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF140959">
        <property type="entry name" value="SSF140959"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR03036">
        <property type="entry name" value="trp_2_3_diox"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3 7 8" id="KW-0223">Dioxygenase</keyword>
    <keyword evidence="1 7" id="KW-0349">Heme</keyword>
    <keyword evidence="5 7" id="KW-0408">Iron</keyword>
    <keyword evidence="2 7" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="4 7" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="6 7" id="KW-0823">Tryptophan catabolism</keyword>
    <feature type="region of interest" description="Substrate binding" evidence="7">
        <location>
            <begin position="55"/>
            <end position="59"/>
        </location>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <position position="117"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <position position="121"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" description="axial binding residue" evidence="7">
        <location>
            <position position="244"/>
        </location>
        <ligand>
            <name>heme</name>
            <dbReference type="ChEBI" id="CHEBI:30413"/>
        </ligand>
        <ligandPart>
            <name>Fe</name>
            <dbReference type="ChEBI" id="CHEBI:18248"/>
        </ligandPart>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <position position="258"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022617"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022964"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023002"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023004"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023079"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01972"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="ABX34810.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="286" mass="32234" checksum="E575B55DAC9CA111" modified="2008-01-15" version="1">MSGCPVHGGLTERIVAEERAQLDFSQSMSYGDYLQLDAILGAQQLLSPTHDELLFIIQHQTSELWMKLMLHELGAATAAVAADRHADAFKMLARVSRIMEQLVGAWSVLATMTPTEYTAMRPYLASSSGFQSYQYRCIEFALGNKNAAMLQPHAHRPDLLARVDAAWRAPSLYDEALRLLARQGLAIPAGHLERDWTLPYTASPEVEAAWAQVYRDPQSHWDLYQLGEKLADIEDAFRLWRFRHVTTVERVIGFKRGTGGTGGVSYLRKMLDVVLFPEIWSVRTKL</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-05-25" version="50" xmlns="http://uniprot.org/uniprot">
    <accession>A9BZ09</accession>
    <name>A9BZ09_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">2TM domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="4" type="ordered locus">Daci_2264</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="5" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX34904.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012204187.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_2264"/>
    <dbReference type="EnsemblBacteria" id="ABX34904">
        <property type="protein sequence ID" value="ABX34904"/>
        <property type="gene ID" value="Daci_2264"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_2264"/>
    <dbReference type="eggNOG" id="ENOG5032Y4Z">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_173284_1_0_4"/>
    <dbReference type="OMA" id="GAHWREA"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025698">
        <property type="entry name" value="2TM_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13239">
        <property type="entry name" value="2TM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0472">Membrane</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="2" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="36"/>
            <end position="57"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="63"/>
            <end position="86"/>
        </location>
    </feature>
    <feature type="domain" description="2TM" evidence="3">
        <location>
            <begin position="27"/>
            <end position="99"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="22"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF13239"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="ABX34904.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="111" mass="12390" checksum="42894085AFF23DD4" modified="2008-01-15" version="1">MRTLDPLDPLHPLDPSARHDDDALERMARRRAGAKMGWMIHASVYVLVNLGLAALSLSQGRHWAIFPALGWGLGLAIHGAVVWLALPGNGWHGRMVERERQTLQSRQGRTR</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="80" xmlns="http://uniprot.org/uniprot">
    <accession>A9BZC7</accession>
    <name>A9BZC7_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Transcriptional regulator, LysR family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Daci_2889</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="4" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the LysR transcriptional regulatory family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX35527.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012204737.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_2889"/>
    <dbReference type="PRIDE" id="A9BZC7"/>
    <dbReference type="EnsemblBacteria" id="ABX35527">
        <property type="protein sequence ID" value="ABX35527"/>
        <property type="gene ID" value="Daci_2889"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_2889"/>
    <dbReference type="eggNOG" id="COG0583">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_039613_16_2_4"/>
    <dbReference type="OMA" id="GQAYYRH"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003700">
        <property type="term" value="F:DNA-binding transcription factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005119">
        <property type="entry name" value="LysR_subst-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000847">
        <property type="entry name" value="Tscrpt_reg_HTH_LysR"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036390">
        <property type="entry name" value="WH_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00126">
        <property type="entry name" value="HTH_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03466">
        <property type="entry name" value="LysR_substrate"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46785">
        <property type="entry name" value="SSF46785"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50931">
        <property type="entry name" value="HTH_LYSR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HTH lysR-type" evidence="2">
        <location>
            <begin position="1"/>
            <end position="59"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00009437"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS50931"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ABX35527.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="300" mass="33041" checksum="9DA5854D4CE1B2CB" modified="2008-01-15" version="1">MKDLNDLYYYVQVVDHGGFAPAGRALGMPKSKLSRRIAQLEERLGTRLIQRSTRRFAVTETGQTYYGHCKAMLVEADAADEAIALTHAEPRGIVRMTCPVALLDARIADMLAAFMAAYPRVEIHLEETNRRVDVVGEGIDVAIRVRPPPLEDSDLVMRMLAERGQCLVACPRLLTGGIPQVPADLAGLPSMDLGLPQHEHVWHLIGPDGTQAAIRHRPRLVTRGMLALRAAALAGVGVVQLPSMMVREQIARGELVHVIPGWAPRREIIHAVFASRRGLLPAVRALLDFLAERFEALDED</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="63" xmlns="http://uniprot.org/uniprot">
    <accession>A9BZN6</accession>
    <name>A9BZN6_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="3">AMP-dependent synthetase and ligase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Daci_3306</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="4" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX35944.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012205144.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_3306"/>
    <dbReference type="PRIDE" id="A9BZN6"/>
    <dbReference type="EnsemblBacteria" id="ABX35944">
        <property type="protein sequence ID" value="ABX35944"/>
        <property type="gene ID" value="Daci_3306"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_3306"/>
    <dbReference type="eggNOG" id="COG0318">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_000022_59_5_4"/>
    <dbReference type="OMA" id="FAIPSMG"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016874">
        <property type="term" value="F:ligase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.300.30">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.12780">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025110">
        <property type="entry name" value="AMP-bd_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045851">
        <property type="entry name" value="AMP-bd_C_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020845">
        <property type="entry name" value="AMP-binding_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000873">
        <property type="entry name" value="AMP-dep_Synth/Lig"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR042099">
        <property type="entry name" value="ANL_N_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00501">
        <property type="entry name" value="AMP-binding"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13193">
        <property type="entry name" value="AMP-binding_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00455">
        <property type="entry name" value="AMP_BINDING"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-0436">Ligase</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="AMP-binding" evidence="1">
        <location>
            <begin position="20"/>
            <end position="443"/>
        </location>
    </feature>
    <feature type="domain" description="AMP-binding_C" evidence="2">
        <location>
            <begin position="452"/>
            <end position="527"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF00501"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF13193"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ABX35944.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="545" mass="60044" checksum="C99730C41CDA49BC" modified="2008-01-15" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="60" xmlns="http://uniprot.org/uniprot">
    <accession>A9BZS4</accession>
    <name>A9BZS4_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="8">L-lactate permease</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="9" type="ordered locus">Daci_3344</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="9 10" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
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                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
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            <strain evidence="10">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="10" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="8">Transports L-lactate across the membrane. Can also transport D-lactate and glycolate.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="8">Cell inner membrane</location>
            <topology evidence="8">Multi-pass membrane protein</topology>
        </subcellularLocation>
        <subcellularLocation>
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            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2 8">Belongs to the lactate permease family.</text>
    </comment>
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        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
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    <dbReference type="STRING" id="398578.Daci_3344"/>
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    <dbReference type="EnsemblBacteria" id="ABX35982">
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        <property type="gene ID" value="Daci_3344"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_3344"/>
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        <property type="taxonomic scope" value="Bacteria"/>
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    </dbReference>
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        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
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        <property type="term" value="F:lactate transmembrane transporter activity"/>
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        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
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    </dbReference>
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        <property type="entry name" value="PTHR30003"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02652">
        <property type="entry name" value="Lactate_perm"/>
        <property type="match status" value="1"/>
    </dbReference>
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        <property type="entry name" value="lctP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
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            <end position="33"/>
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            <begin position="40"/>
            <end position="59"/>
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    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="71"/>
            <end position="96"/>
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    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="117"/>
            <end position="150"/>
        </location>
    </feature>
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            <begin position="156"/>
            <end position="180"/>
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            <begin position="200"/>
            <end position="218"/>
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            <end position="246"/>
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    </feature>
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            <end position="270"/>
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        <source>
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    </evidence>
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        <source>
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        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
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        <source>
            <dbReference type="RuleBase" id="RU365092"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="ABX35982.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="560" mass="58934" checksum="B6D576100AC7DB91" modified="2008-01-15" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="74" xmlns="http://uniprot.org/uniprot">
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        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
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        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
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            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
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        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
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                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
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                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
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                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
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    <dbReference type="EnsemblBacteria" id="ABX36000">
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        <property type="gene ID" value="Daci_3362"/>
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        <source>
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        </source>
    </evidence>
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        <source>
            <dbReference type="EMBL" id="ABX36000.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="339" mass="36260" checksum="76EB34817EE77FF2" modified="2008-01-15" version="1">MPVNQQILLDNRPEGEAVESNFRLVSTETPALAEGQVLVRHHYLSLDPYMRGRMNDSKSYAQPQPLGEVMIGGTVGEVVESRHPKFAVGDKVVGMGGWQEYSVVDGDAPGMLRKVDTTHVPLSHYLGAVGMPGVTAWYGLVKIIAPKAGETVVVSAATGAVGSAFAALAKARGCRVVGIAGGPEKCRYATEELGFDACIDYREHPDTKTMAKALKDACPQGIDGYFENVGGYILDAVLLRTNAFARIALCGMIAGYDGTPLPMTNPALILINRIRIEGFIVSEHMEVWPEALQELGRLVGTGKLRPRESIAEGIASAPSAFLGLLKGKNFGKQLVKLTP</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="57" xmlns="http://uniprot.org/uniprot">
    <accession>A9BZV3</accession>
    <name>A9BZV3_DELAS</name>
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        <submittedName>
            <fullName evidence="6">Multicopper oxidase type 2</fullName>
        </submittedName>
    </protein>
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    <organism evidence="6 7">
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        <lineage>
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    <reference evidence="6 7" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
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        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="7" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
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                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
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                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
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        <subcellularLocation>
            <location evidence="1">Periplasm</location>
        </subcellularLocation>
    </comment>
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        <property type="taxonomic scope" value="Bacteria"/>
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    </dbReference>
    <dbReference type="GO" id="GO:0042597">
        <property type="term" value="C:periplasmic space"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
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        <property type="term" value="F:copper ion binding"/>
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        <property type="project" value="InterPro"/>
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        <property type="project" value="UniProtKB-KW"/>
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        <property type="match status" value="3"/>
    </dbReference>
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        <property type="entry name" value="Cu-oxidase_C"/>
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    </dbReference>
    <dbReference type="InterPro" id="IPR011707">
        <property type="entry name" value="Cu-oxidase_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002355">
        <property type="entry name" value="Cu_oxidase_Cu_BS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008972">
        <property type="entry name" value="Cupredoxin"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006311">
        <property type="entry name" value="TAT_signal"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11709">
        <property type="entry name" value="PTHR11709"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07731">
        <property type="entry name" value="Cu-oxidase_2"/>
        <property type="match status" value="1"/>
    </dbReference>
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        <property type="entry name" value="Cu-oxidase_3"/>
        <property type="match status" value="1"/>
    </dbReference>
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        <property type="entry name" value="SSF49503"/>
        <property type="match status" value="3"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00080">
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        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51318">
        <property type="entry name" value="TAT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="3" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Plastocyanin-like" evidence="5">
        <location>
            <begin position="87"/>
            <end position="214"/>
        </location>
    </feature>
    <feature type="domain" description="Plastocyanin-like" evidence="4">
        <location>
            <begin position="472"/>
            <end position="577"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004418"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023002"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="Pfam" id="PF07731"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="Pfam" id="PF07732"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="ABX36011.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="578" mass="63277" checksum="4A1A8ED944DDCD08" modified="2008-01-15" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-01-19" version="54" xmlns="http://uniprot.org/uniprot">
    <accession>A9C0B0</accession>
    <name>A9C0B0_DELAS</name>
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        <submittedName>
            <fullName evidence="7">DoxX family protein</fullName>
        </submittedName>
    </protein>
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        <name evidence="7" type="ordered locus">Daci_4045</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
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            <taxon>Betaproteobacteria</taxon>
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    <reference evidence="7 8" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
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                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
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        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
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            <strain evidence="8">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="8" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
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            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
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        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the DoxX family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX36676.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
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        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_4045"/>
    <dbReference type="EnsemblBacteria" id="ABX36676">
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        <property type="gene ID" value="Daci_4045"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_4045"/>
    <dbReference type="eggNOG" id="COG2259">
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    </dbReference>
    <dbReference type="HOGENOM" id="CLU_058421_8_1_4"/>
    <dbReference type="OMA" id="LLYIMAF"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR032808">
        <property type="entry name" value="DoxX"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07681">
        <property type="entry name" value="DoxX"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
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    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
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            <end position="69"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
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            <end position="95"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="107"/>
            <end position="130"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00006679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="ABX36676.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="135" mass="14279" checksum="73537D8C27D87FA8" modified="2008-01-15" version="1">MLNRLSNPLALAGRILIALMFVPAGFQKIGGFAGTVGYAASVGMPMPQIGVAIALVVEIVGGLALLLGWCTRWAALVLAFFTLVASFFFHTYWSVPADAAMMQQLLFWKNIAVTGGLLGFAAHGAGGWSVDARRH</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="81" xmlns="http://uniprot.org/uniprot">
    <accession>A9C0C3</accession>
    <name>A9C0C3_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="8">Cytochrome o ubiquinol oxidase, subunit I</fullName>
            <ecNumber evidence="8">1.9.3.1</ecNumber>
        </submittedName>
    </protein>
    <gene>
        <name evidence="8" type="ordered locus">Daci_4058</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
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            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="9" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="5">Belongs to the heme-copper respiratory oxidase family.</text>
    </comment>
    <dbReference type="EC" id="1.9.3.1" evidence="8"/>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX36689.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_4058"/>
    <dbReference type="PRIDE" id="A9C0C3"/>
    <dbReference type="EnsemblBacteria" id="ABX36689">
        <property type="protein sequence ID" value="ABX36689"/>
        <property type="gene ID" value="Daci_4058"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_4058"/>
    <dbReference type="eggNOG" id="COG0843">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_011899_7_1_4"/>
    <dbReference type="OMA" id="FRLWGPL"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0070469">
        <property type="term" value="C:respirasome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004129">
        <property type="term" value="F:cytochrome-c oxidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0020037">
        <property type="term" value="F:heme binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016682">
        <property type="term" value="F:oxidoreductase activity, acting on diphenols and related substances as donors, oxygen as acceptor"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009060">
        <property type="term" value="P:aerobic respiration"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.210.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023616">
        <property type="entry name" value="Cyt_c_oxase-like_su1_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036927">
        <property type="entry name" value="Cyt_c_oxase-like_su1_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000883">
        <property type="entry name" value="Cyt_C_Oxase_1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023615">
        <property type="entry name" value="Cyt_c_Oxase_su1_BS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014207">
        <property type="entry name" value="Cyt_c_ubiqinol_oxidase_su1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10422">
        <property type="entry name" value="PTHR10422"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00115">
        <property type="entry name" value="COX1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR01165">
        <property type="entry name" value="CYCOXIDASEI"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF81442">
        <property type="entry name" value="SSF81442"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR02843">
        <property type="entry name" value="CyoB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50855">
        <property type="entry name" value="COX1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00077">
        <property type="entry name" value="COX1_CUB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-0249">Electron transport</keyword>
    <keyword evidence="5" id="KW-0349">Heme</keyword>
    <keyword evidence="5" id="KW-0408">Iron</keyword>
    <keyword evidence="4 6" id="KW-0472">Membrane</keyword>
    <keyword evidence="5" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="8" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="5" id="KW-0679">Respiratory chain</keyword>
    <keyword evidence="2 5 6" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="3 6" id="KW-1133">Transmembrane helix</keyword>
    <keyword evidence="5" id="KW-0813">Transport</keyword>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="6"/>
            <end position="26"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="47"/>
            <end position="71"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="91"/>
            <end position="113"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="134"/>
            <end position="157"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="177"/>
            <end position="203"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="215"/>
            <end position="241"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="261"/>
            <end position="286"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="298"/>
            <end position="320"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="332"/>
            <end position="356"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="368"/>
            <end position="391"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="403"/>
            <end position="427"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
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            <end position="461"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
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            <end position="506"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="577"/>
            <end position="595"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="601"/>
            <end position="619"/>
        </location>
    </feature>
    <feature type="domain" description="COX1" evidence="7">
        <location>
            <begin position="29"/>
            <end position="547"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="RuleBase" id="RU000370"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="PROSITE" id="PS50855"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="ABX36689.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="645" mass="72107" checksum="9777EF039DEC9258" modified="2008-01-15" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="60" xmlns="http://uniprot.org/uniprot">
    <accession>A9C0K4</accession>
    <name>A9C0K4_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Amidohydrolase 2</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_4447</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
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            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX37077.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012206249.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_4447"/>
    <dbReference type="PRIDE" id="A9C0K4"/>
    <dbReference type="EnsemblBacteria" id="ABX37077">
        <property type="protein sequence ID" value="ABX37077"/>
        <property type="gene ID" value="Daci_4447"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_4447"/>
    <dbReference type="eggNOG" id="COG3618">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_064039_2_1_4"/>
    <dbReference type="OMA" id="DNPMRLY"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016787">
        <property type="term" value="F:hydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006680">
        <property type="entry name" value="Amidohydro-rel"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR032466">
        <property type="entry name" value="Metal_Hydrolase"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04909">
        <property type="entry name" value="Amidohydro_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51556">
        <property type="entry name" value="SSF51556"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Amidohydro-rel" evidence="1">
        <location>
            <begin position="29"/>
            <end position="300"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF04909"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX37077.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="305" mass="34486" checksum="BCBCCD1BCFE919E2" modified="2008-01-15" version="1">MSAFEKTPGWLDWYAGPSKPKFQVPAGAVDAHCHVFGPGDEFPFAPERKYTPCDASKQQLFALRDHLGFARNVIVQATCHGADNRAMVDACKAANGKARGVATVRRSVTDEELQELHAAGVRGVRFNFVKRLVDFTPKDELMEIAGRIAKLGWHVVIYFEAVDLPELWDFFTSLPTTVVVDHMGRPDVSKPVDGPEFELFLRFMREHQNVWSKVSCPERLSVTGPKALDGEQNAYRDVVPFARRVVEEFPDRVLWGTDWPHPNLKDHMPDDGLLVDFIPHIAPTAELQKKLLVDNPMRLYWPEEA</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="42" xmlns="http://uniprot.org/uniprot">
    <accession>A9C0N2</accession>
    <name>A9C0N2_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Daci_4475</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="2" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX37105.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012206277.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_4475"/>
    <dbReference type="PRIDE" id="A9C0N2"/>
    <dbReference type="EnsemblBacteria" id="ABX37105">
        <property type="protein sequence ID" value="ABX37105"/>
        <property type="gene ID" value="Daci_4475"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_4475"/>
    <dbReference type="eggNOG" id="ENOG503360X">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_138378_0_0_4"/>
    <dbReference type="OMA" id="RYTEYGG"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ABX37105.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="133" mass="15017" checksum="45089D6E530173DF" modified="2008-01-15" version="1">MTTSTPLPEPELRAFAAAAAEQQRCADCAVLWRPGWESLSGADKTSHLQQVGALGTPETRELLDEYHPQGTNQWSPDAPIALGWHPYNRCTLWRCHHCNAAFLRYTEYGGYYQDDRIRPLLAHLIVTPEQGRV</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="74" xmlns="http://uniprot.org/uniprot">
    <accession>A9C0Q9</accession>
    <name>A9C0Q9_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Aspartate racemase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_4503</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the aspartate/glutamate racemases family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX37132.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012206302.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_4503"/>
    <dbReference type="PRIDE" id="A9C0Q9"/>
    <dbReference type="EnsemblBacteria" id="ABX37132">
        <property type="protein sequence ID" value="ABX37132"/>
        <property type="gene ID" value="Daci_4503"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_4503"/>
    <dbReference type="eggNOG" id="COG1794">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_055360_1_0_4"/>
    <dbReference type="OMA" id="TNTMHLI"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0047661">
        <property type="term" value="F:amino-acid racemase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006807">
        <property type="term" value="P:nitrogen compound metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015942">
        <property type="entry name" value="Asp/Glu/hydantoin_racemase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001920">
        <property type="entry name" value="Asp/Glu_race"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004380">
        <property type="entry name" value="Asp_race"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR21198:SF7">
        <property type="entry name" value="PTHR21198:SF7"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01177">
        <property type="entry name" value="Asp_Glu_race"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53681">
        <property type="entry name" value="SSF53681"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00035">
        <property type="entry name" value="asp_race"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00007847"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX37132.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="238" mass="26552" checksum="F35962594500BC96" modified="2008-01-15" version="1">MNSNHTEIHRVIGLIGGMSWESSAEYYRLINQGVRDRLGPLRSAKLLMYSVDFGPIEQAQHEGRWDDAAALLEDAARRLQQGGADGVLLCTNTMHKLADRIAAAVRIPFLHIADPVADAARTRGYRKLGLLGTRFTMEQPFMRERLQQQGLEVLVPQEADRAEVHRIIYEELCTGRILEESRRTYQRIMAQLAGQGAQAMVLGCTEISLLVQQEHCPVPVLDTTALHAQAAVDFALEP</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="84" xmlns="http://uniprot.org/uniprot">
    <accession>A9C189</accession>
    <name>A9C189_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="11">Potassium-transporting ATPase KdpC subunit</fullName>
        </recommendedName>
        <alternativeName>
            <fullName evidence="11">ATP phosphohydrolase [potassium-transporting] C chain</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="11">Potassium-binding and translocating subunit C</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="11">Potassium-translocating ATPase C chain</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="11" type="primary">kdpC</name>
        <name evidence="12" type="ordered locus">Daci_5924</name>
    </gene>
    <organism evidence="12 13">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="12 13" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="13">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="13" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="13">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="11">Part of the high-affinity ATP-driven potassium transport (or Kdp) system, which catalyzes the hydrolysis of ATP coupled with the electrogenic transport of potassium into the cytoplasm. This subunit acts as a catalytic chaperone that increases the ATP-binding affinity of the ATP-hydrolyzing subunit KdpB by the formation of a transient KdpB/KdpC/ATP ternary complex.</text>
    </comment>
    <comment type="subunit">
        <text evidence="11">The system is composed of three essential subunits: KdpA, KdpB and KdpC.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="11">Cell inner membrane</location>
            <topology evidence="11">Single-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="11">Belongs to the KdpC family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX38552.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012207721.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_5924"/>
    <dbReference type="PRIDE" id="A9C189"/>
    <dbReference type="EnsemblBacteria" id="ABX38552">
        <property type="protein sequence ID" value="ABX38552"/>
        <property type="gene ID" value="Daci_5924"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_5924"/>
    <dbReference type="eggNOG" id="COG2156">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_077094_0_0_4"/>
    <dbReference type="OMA" id="KYFWPRP"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005887">
        <property type="term" value="C:integral component of plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016787">
        <property type="term" value="F:hydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008556">
        <property type="term" value="F:P-type potassium transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00276">
        <property type="entry name" value="KdpC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003820">
        <property type="entry name" value="KdpC"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30042">
        <property type="entry name" value="PTHR30042"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02669">
        <property type="entry name" value="KdpC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF001296">
        <property type="entry name" value="K_ATPase_KdpC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00681">
        <property type="entry name" value="kdpC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="6 11" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="11" id="KW-0997">Cell inner membrane</keyword>
    <keyword evidence="2 11" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="12" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="9 11" id="KW-0406">Ion transport</keyword>
    <keyword evidence="10 11" id="KW-0472">Membrane</keyword>
    <keyword evidence="5 11" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="7 11" id="KW-0630">Potassium</keyword>
    <keyword evidence="3 11" id="KW-0633">Potassium transport</keyword>
    <keyword evidence="13" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4 11" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="8 11" id="KW-1133">Transmembrane helix</keyword>
    <keyword evidence="1 11" id="KW-0813">Transport</keyword>
    <feature type="transmembrane region" description="Helical" evidence="11">
        <location>
            <begin position="40"/>
            <end position="63"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022448"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022538"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022958"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00023065"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00276"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="EMBL" id="ABX38552.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="13">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="244" mass="25108" checksum="469A6C1CE731BA6B" modified="2008-01-15" version="1">MQVQTHTSGPLPVLRADAQAQAQAVPGGLRSLFGPSLRSALFVAVVTGLAYPLVTTLVAQAAFPKAANGSLVVRQGSVVGSALIGQEFASPRYFQGRPSATTAPDPDKADATVAAPYNAALSAATNQGPTHAALKESVAARVAAYRELNGLAADAAVPVDAVTASASGLDPHISVANAELQLPRVARERQLPVAKVQELLRQQVEPRVLGLLGEPRVNVLQMNLALDDLSAATLQPAAVHAAKE</sequence>
</entry>
<entry dataset="Swiss-Prot" created="2009-03-24" modified="2022-05-25" version="77" xmlns="http://uniprot.org/uniprot">
    <accession>A9C190</accession>
    <name>KDPA_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Potassium-transporting ATPase potassium-binding subunit</fullName>
        </recommendedName>
        <alternativeName>
            <fullName evidence="1">ATP phosphohydrolase [potassium-transporting] A chain</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="1">Potassium-binding and translocating subunit A</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="1">Potassium-translocating ATPase A chain</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="1" type="primary">kdpA</name>
        <name type="ordered locus">Daci_5925</name>
    </gene>
    <organism>
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference key="1">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain>DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="1">Part of the high-affinity ATP-driven potassium transport (or Kdp) system, which catalyzes the hydrolysis of ATP coupled with the electrogenic transport of potassium into the cytoplasm. This subunit binds the periplasmic potassium ions and delivers the ions to the membrane domain of KdpB through an intramembrane tunnel.</text>
    </comment>
    <comment type="subunit">
        <text evidence="1">The system is composed of three essential subunits: KdpA, KdpB and KdpC.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Cell inner membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="1">Belongs to the KdpA family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX38553.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012207722.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A9C190"/>
    <dbReference type="SMR" id="A9C190"/>
    <dbReference type="STRING" id="398578.Daci_5925"/>
    <dbReference type="EnsemblBacteria" id="ABX38553">
        <property type="protein sequence ID" value="ABX38553"/>
        <property type="gene ID" value="Daci_5925"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_5925"/>
    <dbReference type="eggNOG" id="COG2060">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_018614_3_0_4"/>
    <dbReference type="OMA" id="LMMWTEF"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005887">
        <property type="term" value="C:integral component of plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008556">
        <property type="term" value="F:P-type potassium transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030955">
        <property type="term" value="F:potassium ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00275">
        <property type="entry name" value="KdpA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004623">
        <property type="entry name" value="KdpA"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30607">
        <property type="entry name" value="PTHR30607"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03814">
        <property type="entry name" value="KdpA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF001294">
        <property type="entry name" value="K_ATPaseA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00680">
        <property type="entry name" value="kdpA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword id="KW-0997">Cell inner membrane</keyword>
    <keyword id="KW-1003">Cell membrane</keyword>
    <keyword id="KW-0406">Ion transport</keyword>
    <keyword id="KW-0472">Membrane</keyword>
    <keyword id="KW-0630">Potassium</keyword>
    <keyword id="KW-0633">Potassium transport</keyword>
    <keyword id="KW-1185">Reference proteome</keyword>
    <keyword id="KW-0812">Transmembrane</keyword>
    <keyword id="KW-1133">Transmembrane helix</keyword>
    <keyword id="KW-0813">Transport</keyword>
    <feature type="chain" id="PRO_1000114677" description="Potassium-transporting ATPase potassium-binding subunit">
        <location>
            <begin position="1"/>
            <end position="568"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="1"/>
            <end position="21"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="60"/>
            <end position="80"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="129"/>
            <end position="149"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="174"/>
            <end position="194"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="251"/>
            <end position="271"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="278"/>
            <end position="298"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="381"/>
            <end position="401"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="420"/>
            <end position="440"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="488"/>
            <end position="508"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="528"/>
            <end position="548"/>
        </location>
    </feature>
    <evidence type="ECO:0000255" key="1">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00275"/>
        </source>
    </evidence>
    <sequence length="568" mass="60218" checksum="75D3EB07E00428DF" modified="2008-01-15" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="90" xmlns="http://uniprot.org/uniprot">
    <accession>A9C1K9</accession>
    <name>A9C1K9_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">Homoserine O-succinyltransferase</fullName>
            <shortName evidence="3">HST</shortName>
            <ecNumber evidence="3">2.3.1.46</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="3">Homoserine transsuccinylase</fullName>
            <shortName evidence="3">HTS</shortName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="3" type="primary">metXS</name>
        <name evidence="6" type="ordered locus">Daci_6044</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="7" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="3">Transfers a succinyl group from succinyl-CoA to L-homoserine, forming succinyl-L-homoserine.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="3">
            <text>L-homoserine + succinyl-CoA = CoA + O-succinyl-L-homoserine</text>
            <dbReference type="Rhea" id="RHEA:22008"/>
            <dbReference type="ChEBI" id="CHEBI:57287"/>
            <dbReference type="ChEBI" id="CHEBI:57292"/>
            <dbReference type="ChEBI" id="CHEBI:57476"/>
            <dbReference type="ChEBI" id="CHEBI:57661"/>
            <dbReference type="EC" id="2.3.1.46"/>
        </reaction>
    </comment>
    <comment type="pathway">
        <text evidence="3">Amino-acid biosynthesis; L-methionine biosynthesis via de novo pathway; O-succinyl-L-homoserine from L-homoserine: step 1/1.</text>
    </comment>
    <comment type="subunit">
        <text evidence="3">Homodimer.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="3">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="3">Belongs to the AB hydrolase superfamily. MetX family.</text>
    </comment>
    <comment type="caution">
        <text evidence="3">Lacks conserved residue(s) required for the propagation of feature annotation.</text>
    </comment>
    <dbReference type="EC" id="2.3.1.46" evidence="3"/>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX38672.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012207841.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_6044"/>
    <dbReference type="PRIDE" id="A9C1K9"/>
    <dbReference type="EnsemblBacteria" id="ABX38672">
        <property type="protein sequence ID" value="ABX38672"/>
        <property type="gene ID" value="Daci_6044"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_6044"/>
    <dbReference type="eggNOG" id="COG2021">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_028760_1_2_4"/>
    <dbReference type="OMA" id="TRFCVVS"/>
    <dbReference type="UniPathway" id="UPA00051">
        <property type="reaction ID" value="UER00075"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008899">
        <property type="term" value="F:homoserine O-succinyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009086">
        <property type="term" value="P:methionine biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.1820">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00296">
        <property type="entry name" value="MetX_acyltransf"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029058">
        <property type="entry name" value="AB_hydrolase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000073">
        <property type="entry name" value="AB_hydrolase_1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008220">
        <property type="entry name" value="HAT_MetX-like"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR32268">
        <property type="entry name" value="PTHR32268"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00561">
        <property type="entry name" value="Abhydrolase_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF000443">
        <property type="entry name" value="Homoser_Ac_trans"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53474">
        <property type="entry name" value="SSF53474"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01392">
        <property type="entry name" value="homoserO_Ac_trn"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3 6" id="KW-0012">Acyltransferase</keyword>
    <keyword evidence="3" id="KW-0028">Amino-acid biosynthesis</keyword>
    <keyword evidence="3" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="2 3" id="KW-0486">Methionine biosynthesis</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1 3 6" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="AB hydrolase-1" evidence="5">
        <location>
            <begin position="43"/>
            <end position="355"/>
        </location>
    </feature>
    <feature type="active site" description="Nucleophile" evidence="3 4">
        <location>
            <position position="149"/>
        </location>
    </feature>
    <feature type="active site" evidence="3 4">
        <location>
            <position position="316"/>
        </location>
    </feature>
    <feature type="active site" evidence="3 4">
        <location>
            <position position="349"/>
        </location>
    </feature>
    <feature type="binding site" evidence="3">
        <location>
            <position position="219"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="3">
        <location>
            <position position="350"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="site" description="Important for acyl-CoA specificity" evidence="3">
        <location>
            <position position="318"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023167"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00296"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="PIRSR" id="PIRSR000443-1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="Pfam" id="PF00561"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="ABX38672.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="382" mass="42351" checksum="09E032DE19E1021E" modified="2008-01-15" version="1">MSFIATPQTMHFDEPLPLQGGGSIRDYDLAYETYGQLNADRSNAVLVCHALNASHHVAGVYEGQAKSEGWWDNMIGPGKPVDTNRFFVIGVNNLGSCFGSTGPMHAHPDTGKIYGADFPVVTVEDWVDAQARLLDRLGIGQLAAVLGGSLGGMQALSWSLRHPDRMRHAVVVASAPNLNAENIAFNEVARRAIVTDPDFHGGHFYEHGVVPARGLRIARMIGHITYLSDDVMNQKFGRQLREGLDLKYSTQDVEFQIESYLRYQGEKFSSYFDANTYLLITRALDYFDPARAHGGDLTRALSVAKAGFLLVSFTTDWRFAPARSRELVKSLLENNRDVSYAEIDAPHGHDAFLLDDPRYMKVMRSYFDNIAQETTTAAKEAA</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="87" xmlns="http://uniprot.org/uniprot">
    <accession>A9C204</accession>
    <name>A9C204_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="5">RNA polymerase, sigma-24 subunit, ECF subfamily</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ordered locus">Daci_3002</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="6" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the sigma-70 factor family. ECF subfamily.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX35640.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012204846.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_3002"/>
    <dbReference type="PRIDE" id="A9C204"/>
    <dbReference type="EnsemblBacteria" id="ABX35640">
        <property type="protein sequence ID" value="ABX35640"/>
        <property type="gene ID" value="Daci_3002"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_3002"/>
    <dbReference type="eggNOG" id="COG1595">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_047691_1_2_4"/>
    <dbReference type="OMA" id="CRNLWID"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016987">
        <property type="term" value="F:sigma factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006352">
        <property type="term" value="P:DNA-templated transcription, initiation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0050896">
        <property type="term" value="P:response to stimulus"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR039425">
        <property type="entry name" value="RNA_pol_sigma-70-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014284">
        <property type="entry name" value="RNA_pol_sigma-70_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007627">
        <property type="entry name" value="RNA_pol_sigma70_r2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013249">
        <property type="entry name" value="RNA_pol_sigma70_r4_t2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013325">
        <property type="entry name" value="RNA_pol_sigma_r2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013324">
        <property type="entry name" value="RNA_pol_sigma_r3/r4-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43133">
        <property type="entry name" value="PTHR43133"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04542">
        <property type="entry name" value="Sigma70_r2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08281">
        <property type="entry name" value="Sigma70_r4_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF88659">
        <property type="entry name" value="SSF88659"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF88946">
        <property type="entry name" value="SSF88946"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR02937">
        <property type="entry name" value="sigma70-ECF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Sigma70_r2" evidence="3">
        <location>
            <begin position="8"/>
            <end position="72"/>
        </location>
    </feature>
    <feature type="domain" description="Sigma70_r4_2" evidence="4">
        <location>
            <begin position="97"/>
            <end position="148"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="152"/>
            <end position="191"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="2">
        <location>
            <begin position="157"/>
            <end position="177"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00010641"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF04542"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="Pfam" id="PF08281"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="ABX35640.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="191" mass="21070" checksum="8E72052EC9320086" modified="2008-01-15" version="1">MDRSQILEHLPGLRRYARLLAGDAWAADDLVQDTLERACRKWLLWRPGGDLRAWLFTLMHNLYLNQRRSAARGQWLDIDSLSETLAAPEDSSDAALDLERCLQRLPAEQRAVLLLVSVEDMSYADTARVLQLPLGTVMSRLSRARSRLRELMEAPSAPSATSASSAAPAQSAPTAKAATPQAAAPALRRLK</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="55" xmlns="http://uniprot.org/uniprot">
    <accession>A9C257</accession>
    <name>A9C257_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Daci_3055</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="2" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX35693.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012204899.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_3055"/>
    <dbReference type="PRIDE" id="A9C257"/>
    <dbReference type="EnsemblBacteria" id="ABX35693">
        <property type="protein sequence ID" value="ABX35693"/>
        <property type="gene ID" value="Daci_3055"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_3055"/>
    <dbReference type="eggNOG" id="COG3193">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_103773_1_2_4"/>
    <dbReference type="OMA" id="QWSVTIA"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.450.150">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005624">
        <property type="entry name" value="PduO/GlcC-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038084">
        <property type="entry name" value="PduO/GlcC-like_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03928">
        <property type="entry name" value="Haem_degrading"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF143744">
        <property type="entry name" value="SSF143744"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ABX35693.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="138" mass="14201" checksum="601AB78016A65517" modified="2008-01-15" version="1">MKHKPCLDLQDIKTIAQAAEAHATARGWAVSIAIADDGGHLLWLQRLDGAAPASAHIAPAKAHAAALGRKESRLYEEMINGGRTAYLSVPALQGLLEGGVPITSEGHCLGAVGVSGVKPAEDAEVARAGIAALQVLKE</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="88" xmlns="http://uniprot.org/uniprot">
    <accession>A9C274</accession>
    <name>A9C274_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Two component transcriptional regulator, LuxR family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ordered locus">Daci_3380</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="6" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX36018.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012205218.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_3380"/>
    <dbReference type="PRIDE" id="A9C274"/>
    <dbReference type="EnsemblBacteria" id="ABX36018">
        <property type="protein sequence ID" value="ABX36018"/>
        <property type="gene ID" value="Daci_3380"/>
    </dbReference>
    <dbReference type="GeneID" id="60687632"/>
    <dbReference type="KEGG" id="dac:Daci_3380"/>
    <dbReference type="eggNOG" id="COG2197">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_000445_90_10_4"/>
    <dbReference type="OMA" id="PHVLTHM"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000160">
        <property type="term" value="P:phosphorelay signal transduction system"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006355">
        <property type="term" value="P:regulation of transcription, DNA-templated"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd06170">
        <property type="entry name" value="LuxR_C_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011006">
        <property type="entry name" value="CheY-like_superfamily"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016032">
        <property type="entry name" value="Sig_transdc_resp-reg_C-effctor"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001789">
        <property type="entry name" value="Sig_transdc_resp-reg_receiver"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000792">
        <property type="entry name" value="Tscrpt_reg_LuxR_C"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00196">
        <property type="entry name" value="GerE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00072">
        <property type="entry name" value="Response_reg"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00038">
        <property type="entry name" value="HTHLUXR"/>
    </dbReference>
    <dbReference type="SMART" id="SM00421">
        <property type="entry name" value="HTH_LUXR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00448">
        <property type="entry name" value="REC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46894">
        <property type="entry name" value="SSF46894"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52172">
        <property type="entry name" value="SSF52172"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00622">
        <property type="entry name" value="HTH_LUXR_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50043">
        <property type="entry name" value="HTH_LUXR_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50110">
        <property type="entry name" value="RESPONSE_REGULATORY"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="2" id="KW-0597">Phosphoprotein</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Response regulatory" evidence="4">
        <location>
            <begin position="46"/>
            <end position="162"/>
        </location>
    </feature>
    <feature type="domain" description="HTH luxR-type" evidence="3">
        <location>
            <begin position="192"/>
            <end position="257"/>
        </location>
    </feature>
    <feature type="modified residue" description="4-aspartylphosphate" evidence="2">
        <location>
            <position position="97"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00169"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="PROSITE" id="PS50043"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="PROSITE" id="PS50110"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="ABX36018.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="259" mass="28664" checksum="CD09B6314DB9C746" modified="2008-01-15" version="1">MNPSDVPADARPLIAESPRAQGMLGTGLSSAMWPDYLAGQPDKPVRVLLVDDDAHIRMVIAQEIMNDPRTLVVAQAGSVRDGRKAIRQHEFDVMLVDLNLGDGEGFELLDMMKTVRPTAEAVIISVMENDEQVLRAFELGATGYLVKNSWFGNYPQAVLQVANGGASVTPSLARRLLQRFDKTQGAEPKRRTPDEADRLSTREREVLRMVASGYTSAEIGSRLMISAMTVNTHIKNIYRKLQVRTRAQAVRFASLRGLF</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="79" xmlns="http://uniprot.org/uniprot">
    <accession>A9C2H1</accession>
    <name>A9C2H1_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Transcriptional regulator, AsnC family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ordered locus">Daci_3479</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="6" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX36115.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012205315.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_3479"/>
    <dbReference type="PRIDE" id="A9C2H1"/>
    <dbReference type="EnsemblBacteria" id="ABX36115">
        <property type="protein sequence ID" value="ABX36115"/>
        <property type="gene ID" value="Daci_3479"/>
    </dbReference>
    <dbReference type="GeneID" id="60687704"/>
    <dbReference type="KEGG" id="dac:Daci_3479"/>
    <dbReference type="eggNOG" id="COG1522">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_091233_5_3_4"/>
    <dbReference type="OMA" id="NIFCKIR"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043565">
        <property type="term" value="F:sequence-specific DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000485">
        <property type="entry name" value="AsnC-type_HTH_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011008">
        <property type="entry name" value="Dimeric_a/b-barrel"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019888">
        <property type="entry name" value="Tscrpt_reg_AsnC-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019887">
        <property type="entry name" value="Tscrpt_reg_AsnC/Lrp_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036390">
        <property type="entry name" value="WH_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01037">
        <property type="entry name" value="AsnC_trans_reg"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13404">
        <property type="entry name" value="HTH_AsnC-type"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00033">
        <property type="entry name" value="HTHASNC"/>
    </dbReference>
    <dbReference type="SMART" id="SM00344">
        <property type="entry name" value="HTH_ASNC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46785">
        <property type="entry name" value="SSF46785"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54909">
        <property type="entry name" value="SSF54909"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50956">
        <property type="entry name" value="HTH_ASNC_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0804">Transcription</keyword>
    <keyword evidence="1" id="KW-0805">Transcription regulation</keyword>
    <feature type="domain" description="HTH asnC-type" evidence="4">
        <location>
            <begin position="5"/>
            <end position="74"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023015"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023163"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="PROSITE" id="PS50956"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="ABX36115.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="159" mass="17705" checksum="1C88D3640BCEAB36" modified="2008-01-15" version="1">MEYRLDETDRQLLRLLQTNARASTAHLARQMNLARTTVVARIARLEQEGVIAGYGVRLGARVEQSAVRAYCGIRVQPKTATLVMQALNRFTEVEEVSAVSGQYDYMVFVRCESNEKLDALLDRIGLIDGIQQTYTSVVLSRKIDRRTTAALSQPGESAA</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="75" xmlns="http://uniprot.org/uniprot">
    <accession>A9C2N6</accession>
    <name>A9C2N6_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="8">Methylmalonyl-CoA mutase, large subunit</fullName>
            <ecNumber evidence="8">5.4.99.2</ecNumber>
        </submittedName>
    </protein>
    <gene>
        <name evidence="8" type="ordered locus">Daci_3753</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="9" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>adenosylcob(III)alamin</name>
            <dbReference type="ChEBI" id="CHEBI:18408"/>
        </cofactor>
    </comment>
    <dbReference type="EC" id="5.4.99.2" evidence="8"/>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX36385.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_3753"/>
    <dbReference type="PRIDE" id="A9C2N6"/>
    <dbReference type="EnsemblBacteria" id="ABX36385">
        <property type="protein sequence ID" value="ABX36385"/>
        <property type="gene ID" value="Daci_3753"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_3753"/>
    <dbReference type="eggNOG" id="COG1884">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="eggNOG" id="COG2185">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_009523_3_1_4"/>
    <dbReference type="OMA" id="PWGGSAY"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0031419">
        <property type="term" value="F:cobalamin binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004494">
        <property type="term" value="F:methylmalonyl-CoA mutase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006159">
        <property type="entry name" value="Acid_CoA_mut_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016176">
        <property type="entry name" value="Cbl-dep_enz_cat"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006158">
        <property type="entry name" value="Cobalamin-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036724">
        <property type="entry name" value="Cobalamin-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006099">
        <property type="entry name" value="MeMalonylCoA_mutase_a/b_cat"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006098">
        <property type="entry name" value="MMCoA_mutase_a_cat"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02310">
        <property type="entry name" value="B12-binding"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01642">
        <property type="entry name" value="MM_CoA_mutase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51703">
        <property type="entry name" value="SSF51703"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52242">
        <property type="entry name" value="SSF52242"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00640">
        <property type="entry name" value="acid_CoA_mut_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00641">
        <property type="entry name" value="acid_CoA_mut_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51332">
        <property type="entry name" value="B12_BINDING"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00544">
        <property type="entry name" value="METMALONYL_COA_MUTASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0846">Cobalamin</keyword>
    <keyword evidence="5" id="KW-0170">Cobalt</keyword>
    <keyword evidence="4 8" id="KW-0413">Isomerase</keyword>
    <keyword evidence="3" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="B12-binding" evidence="7">
        <location>
            <begin position="607"/>
            <end position="738"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="6">
        <location>
            <begin position="1"/>
            <end position="20"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001922"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022628"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023235"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023285"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="PROSITE" id="PS51332"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="ABX36385.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="738" mass="80033" checksum="ED1897F3B6701049" modified="2008-01-15" version="1"> </sequence>
</entry>
<entry dataset="Swiss-Prot" created="2009-07-28" modified="2022-08-03" version="79" xmlns="http://uniprot.org/uniprot">
    <accession>A9C2R2</accession>
    <name>BIOB_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Biotin synthase</fullName>
            <ecNumber evidence="1">2.8.1.6</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="1" type="primary">bioB</name>
        <name type="ordered locus">Daci_3779</name>
    </gene>
    <organism>
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference key="1">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain>DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="1">Catalyzes the conversion of dethiobiotin (DTB) to biotin by the insertion of a sulfur atom into dethiobiotin via a radical-based mechanism.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>(4R,5S)-dethiobiotin + [sulfur carrier]-SH + 2 reduced [2Fe-2S]-[ferredoxin] + 2 S-adenosyl-L-methionine = 2 5'-deoxyadenosine + [sulfur carrier]-H + biotin + 2 L-methionine + 2 oxidized [2Fe-2S]-[ferredoxin]</text>
            <dbReference type="Rhea" id="RHEA:22060"/>
            <dbReference type="Rhea" id="RHEA-COMP:10000"/>
            <dbReference type="Rhea" id="RHEA-COMP:10001"/>
            <dbReference type="Rhea" id="RHEA-COMP:14737"/>
            <dbReference type="Rhea" id="RHEA-COMP:14739"/>
            <dbReference type="ChEBI" id="CHEBI:17319"/>
            <dbReference type="ChEBI" id="CHEBI:29917"/>
            <dbReference type="ChEBI" id="CHEBI:33737"/>
            <dbReference type="ChEBI" id="CHEBI:33738"/>
            <dbReference type="ChEBI" id="CHEBI:57586"/>
            <dbReference type="ChEBI" id="CHEBI:57844"/>
            <dbReference type="ChEBI" id="CHEBI:59789"/>
            <dbReference type="ChEBI" id="CHEBI:64428"/>
            <dbReference type="ChEBI" id="CHEBI:149473"/>
            <dbReference type="EC" id="2.8.1.6"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>[4Fe-4S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:49883"/>
        </cofactor>
        <text evidence="1">Binds 1 [4Fe-4S] cluster. The cluster is coordinated with 3 cysteines and an exchangeable S-adenosyl-L-methionine.</text>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>[2Fe-2S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:190135"/>
        </cofactor>
        <text evidence="1">Binds 1 [2Fe-2S] cluster. The cluster is coordinated with 3 cysteines and 1 arginine.</text>
    </comment>
    <comment type="pathway">
        <text evidence="1">Cofactor biosynthesis; biotin biosynthesis; biotin from 7,8-diaminononanoate: step 2/2.</text>
    </comment>
    <comment type="subunit">
        <text evidence="1">Homodimer.</text>
    </comment>
    <comment type="similarity">
        <text evidence="1">Belongs to the radical SAM superfamily. Biotin synthase family.</text>
    </comment>
    <dbReference type="EC" id="2.8.1.6" evidence="1"/>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX36411.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012205605.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A9C2R2"/>
    <dbReference type="SMR" id="A9C2R2"/>
    <dbReference type="STRING" id="398578.Daci_3779"/>
    <dbReference type="PRIDE" id="A9C2R2"/>
    <dbReference type="EnsemblBacteria" id="ABX36411">
        <property type="protein sequence ID" value="ABX36411"/>
        <property type="gene ID" value="Daci_3779"/>
    </dbReference>
    <dbReference type="GeneID" id="60688005"/>
    <dbReference type="KEGG" id="dac:Daci_3779"/>
    <dbReference type="eggNOG" id="COG0502">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_033172_1_2_4"/>
    <dbReference type="OMA" id="ADRFCMG"/>
    <dbReference type="UniPathway" id="UPA00078">
        <property type="reaction ID" value="UER00162"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051537">
        <property type="term" value="F:2 iron, 2 sulfur cluster binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051539">
        <property type="term" value="F:4 iron, 4 sulfur cluster binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004076">
        <property type="term" value="F:biotin synthase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005506">
        <property type="term" value="F:iron ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009102">
        <property type="term" value="P:biotin biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.20.20.70">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01694">
        <property type="entry name" value="BioB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013785">
        <property type="entry name" value="Aldolase_TIM"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010722">
        <property type="entry name" value="BATS_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002684">
        <property type="entry name" value="Biotin_synth/BioAB"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR024177">
        <property type="entry name" value="Biotin_synthase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006638">
        <property type="entry name" value="Elp3/MiaB/NifB"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007197">
        <property type="entry name" value="rSAM"/>
    </dbReference>
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        <property type="entry name" value="PTHR22976"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF06968">
        <property type="entry name" value="BATS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04055">
        <property type="entry name" value="Radical_SAM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF001619">
        <property type="entry name" value="Biotin_synth"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SFLD" id="SFLDF00272">
        <property type="entry name" value="biotin_synthase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00876">
        <property type="entry name" value="BATS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00729">
        <property type="entry name" value="Elp3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00433">
        <property type="entry name" value="bioB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51918">
        <property type="entry name" value="RADICAL_SAM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword id="KW-0001">2Fe-2S</keyword>
    <keyword id="KW-0004">4Fe-4S</keyword>
    <keyword id="KW-0093">Biotin biosynthesis</keyword>
    <keyword id="KW-0408">Iron</keyword>
    <keyword id="KW-0411">Iron-sulfur</keyword>
    <keyword id="KW-0479">Metal-binding</keyword>
    <keyword id="KW-1185">Reference proteome</keyword>
    <keyword id="KW-0949">S-adenosyl-L-methionine</keyword>
    <keyword id="KW-0808">Transferase</keyword>
    <feature type="chain" id="PRO_0000381343" description="Biotin synthase">
        <location>
            <begin position="1"/>
            <end position="353"/>
        </location>
    </feature>
    <feature type="domain" description="Radical SAM core" evidence="2">
        <location>
            <begin position="72"/>
            <end position="299"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="3">
        <location>
            <begin position="1"/>
            <end position="30"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="3">
        <location>
            <begin position="1"/>
            <end position="20"/>
        </location>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <position position="87"/>
        </location>
        <ligand>
            <name>[4Fe-4S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:49883"/>
            <note>4Fe-4S-S-AdoMet</note>
        </ligand>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <position position="91"/>
        </location>
        <ligand>
            <name>[4Fe-4S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:49883"/>
            <note>4Fe-4S-S-AdoMet</note>
        </ligand>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <position position="94"/>
        </location>
        <ligand>
            <name>[4Fe-4S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:49883"/>
            <note>4Fe-4S-S-AdoMet</note>
        </ligand>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <position position="131"/>
        </location>
        <ligand>
            <name>[2Fe-2S] cluster</name>
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    </feature>
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        <location>
            <position position="162"/>
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        <ligand>
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        </ligand>
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        <location>
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        </location>
        <ligand>
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            <dbReference type="ChEBI" id="CHEBI:190135"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <position position="294"/>
        </location>
        <ligand>
            <name>[2Fe-2S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:190135"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000255" key="1">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01694"/>
        </source>
    </evidence>
    <evidence type="ECO:0000255" key="2">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU01266"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <sequence length="353" mass="37780" checksum="62DBF333CF284EF5" modified="2008-01-15" version="1">MTACSTTPTTSATSAQPAAGSPLQWHARPSKSDTLPFEGAWSVQAIQELLDKPFMDLMFQAQSVHREHWPAGDIELATLLSVKTGGCPENCGYCPQAAEFDTGVKAEKLMSVDEVTRAAQAAKDAGATRFCMGAAWRAPKDRDIEKMNELIGAVKGLGMQTCATLGMLQPHQAQSLREAGLDYYNHNLDTAPEYYQDVVSTRQYQDRLDTLKAVRGAGISVCCGGIIGMGEAPVHRAGLIAQLANLNPHPESVPINSLVRVPGTPLADSEPVDPLDFVRVIAVARITMPTARVRLSAGRQQLGDAVQALCFMAGANSIFYGDKLLVTGNPDVEADTTLLRKLGLSGTRTSVQE</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="47" xmlns="http://uniprot.org/uniprot">
    <accession>A9C310</accession>
    <name>A9C310_DELAS</name>
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        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
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        <name evidence="2" type="ordered locus">Daci_4183</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
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            <taxon>Comamonadaceae</taxon>
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    </organism>
    <reference evidence="2 3" key="1">
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            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
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            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
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            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX36814.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012205991.1">
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    </dbReference>
    <dbReference type="STRING" id="398578.Daci_4183"/>
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    <dbReference type="EnsemblBacteria" id="ABX36814">
        <property type="protein sequence ID" value="ABX36814"/>
        <property type="gene ID" value="Daci_4183"/>
    </dbReference>
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    <dbReference type="eggNOG" id="ENOG502Z7HX">
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    </dbReference>
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    <dbReference type="OMA" id="NPWLEAR"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR026331">
        <property type="entry name" value="PFL_4710"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009649">
        <property type="entry name" value="TraU"/>
    </dbReference>
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        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR03756">
        <property type="entry name" value="conj_TIGR03756"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="1">
        <location>
            <begin position="1"/>
            <end position="28"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5002736110" evidence="1">
        <location>
            <begin position="29"/>
            <end position="315"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX36814.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="315" mass="34585" checksum="D17F8D296338EA07" modified="2008-01-15" version="1">MTRPFERMRRLRAGVVSVLLLSATGSYALNTATIVGSVASPDCLEYRVVGICYWLYCTWTGCTVRTSIKVRHYIPDAVVSSYSNTGENPWVEVRAMSAPNPSAQAGGDGTTNEDHENNLAKFKNADVIGHPGVEVFNQFVSSSGYFCEGAGTAFMPYLLSTLDTLAWRYNVPEMAYPEALIPGRREVGARTTMNLWGNVYPRGGFLHQADDHKAGAVVAQRAGDVVTRRGQIHVYQPLLANSRPGYWPAGALMEGDASTGKWQELTPVLSSSCTVFPRSGFLTQAQQGDYAWALWRPYACCERRGQVFLGSVDFQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="52" xmlns="http://uniprot.org/uniprot">
    <accession>A9C3K1</accession>
    <name>A9C3K1_DELAS</name>
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        <submittedName>
            <fullName evidence="2">Peptidase U35 phage prohead HK97</fullName>
        </submittedName>
    </protein>
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        <name evidence="2" type="ordered locus">Daci_4683</name>
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    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
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        <lineage>
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            <taxon>Betaproteobacteria</taxon>
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        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX37312.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
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        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_4683"/>
    <dbReference type="PRIDE" id="A9C3K1"/>
    <dbReference type="EnsemblBacteria" id="ABX37312">
        <property type="protein sequence ID" value="ABX37312"/>
        <property type="gene ID" value="Daci_4683"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_4683"/>
    <dbReference type="eggNOG" id="COG3087">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_024622_2_0_4"/>
    <dbReference type="OMA" id="RQMIIND"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="177"/>
            <end position="267"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="182"/>
            <end position="196"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="210"/>
            <end position="258"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX37312.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="693" mass="75283" checksum="4BAD32FA0DA5FCA2" modified="2008-01-15" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="31" xmlns="http://uniprot.org/uniprot">
    <accession>A9BLM3</accession>
    <name>A9BLM3_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Daci_3877</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
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                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="2" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX36508.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012205702.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_3877"/>
    <dbReference type="PRIDE" id="A9BLM3"/>
    <dbReference type="EnsemblBacteria" id="ABX36508">
        <property type="protein sequence ID" value="ABX36508"/>
        <property type="gene ID" value="Daci_3877"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_3877"/>
    <dbReference type="HOGENOM" id="CLU_1692621_0_0_4"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ABX36508.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="155" mass="18148" checksum="2AC940BC7275DD46" modified="2008-01-15" version="1">MEDFLEKYNIHDRPINNIMSSFLLYFEEINQESKNYKGFAEVGLFQTPETIFSGSIRATINGRNFNAAIISDKTHQSCNGFFQENSERADNIKILFNFIENRLTNDCIIPNIAKFIFNNQSTVNLNAKWISINIEDARNNFNRDLFDEGYLLRLW</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="45" xmlns="http://uniprot.org/uniprot">
    <accession>A9BLM7</accession>
    <name>A9BLM7_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_3881</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX36512.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012205706.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_3881"/>
    <dbReference type="PRIDE" id="A9BLM7"/>
    <dbReference type="EnsemblBacteria" id="ABX36512">
        <property type="protein sequence ID" value="ABX36512"/>
        <property type="gene ID" value="Daci_3881"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_3881"/>
    <dbReference type="eggNOG" id="ENOG502ZAP2">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_102834_0_0_4"/>
    <dbReference type="OMA" id="AWHQRER"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="1">
        <location>
            <begin position="1"/>
            <end position="26"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5002732283" evidence="1">
        <location>
            <begin position="27"/>
            <end position="237"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX36512.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="237" mass="26317" checksum="689A9378B5B9EB03" modified="2008-01-15" version="1">MRNPHSLWAAAALGLAACLGTSPAHAARPMITDDARIVDAKSCQLESWVKSKKDSTEFWAQPACNFTGNLELTLGAARTREDGSSRTTDVVIQGKTLFKELQPNGWGWGLAVGNARHPNDEGQGRGDLYAYVPVTFSMRDDRLFFHTNVGWLRTAQTHRNLMTWGLATEAQLSQSTWLIAETFGQNQGKPFYQMGLRYWLVPGHVQIDATYGNRAGSSTQERWFSIGLRLLSSPFLP</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="57" xmlns="http://uniprot.org/uniprot">
    <accession>A9BLN7</accession>
    <name>A9BLN7_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Flavin reductase domain protein FMN-binding</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_3891</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX36522.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012205716.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_3891"/>
    <dbReference type="PRIDE" id="A9BLN7"/>
    <dbReference type="EnsemblBacteria" id="ABX36522">
        <property type="protein sequence ID" value="ABX36522"/>
        <property type="gene ID" value="Daci_3891"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_3891"/>
    <dbReference type="eggNOG" id="COG1853">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_059021_5_4_4"/>
    <dbReference type="OMA" id="WAMPLDF"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0010181">
        <property type="term" value="F:FMN binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016646">
        <property type="term" value="F:oxidoreductase activity, acting on the CH-NH group of donors, NAD or NADP as acceptor"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.30.110.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002563">
        <property type="entry name" value="Flavin_Rdtase-like_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012349">
        <property type="entry name" value="Split_barrel_FMN-bd"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01613">
        <property type="entry name" value="Flavin_Reduct"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00903">
        <property type="entry name" value="Flavin_Reduct"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Flavin_Reduct" evidence="1">
        <location>
            <begin position="15"/>
            <end position="166"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="SMART" id="SM00903"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX36522.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="194" mass="20817" checksum="58D62829D44A7B16" modified="2008-01-15" version="1">MNPHIAPVDLAKSYRLINHGPTVLVSARHGGVDNVMAAAWCCALDFAPPKLTVVLDKATATRALVEHSGMFVIQVPTAAQLQLTHQVGTHTLSTDAGKLATSGVQLFGMEGFDLPFVDGCAGWLACRLIPEPHNQQAYDLFIGEIVGAWSDTRVFSDGHWHFEDADPALRSLHYVAGGQFYAIGQALNVQDGSP</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="46" xmlns="http://uniprot.org/uniprot">
    <accession>A9BLQ3</accession>
    <name>A9BLQ3_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Transcriptional regulator, LysR family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_4211</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX36842.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012206014.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_4211"/>
    <dbReference type="PRIDE" id="A9BLQ3"/>
    <dbReference type="EnsemblBacteria" id="ABX36842">
        <property type="protein sequence ID" value="ABX36842"/>
        <property type="gene ID" value="Daci_4211"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_4211"/>
    <dbReference type="eggNOG" id="COG0583">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_039613_11_0_4"/>
    <dbReference type="OMA" id="DYPIYRW"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005119">
        <property type="entry name" value="LysR_subst-bd"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03466">
        <property type="entry name" value="LysR_substrate"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="LysR_substrate" evidence="1">
        <location>
            <begin position="10"/>
            <end position="200"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF03466"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX36842.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="213" mass="23431" checksum="84BDC777F46D8BB4" modified="2008-01-15" version="1">MDNLTSQPAHLRLAIAPGVSSSQLSVLLALQRAEEPEVSIAFFEVAGDELLDGLREGRYDVGLSLQGSSDPAIQTQPLWIEHMAVAIPLRLPLLEQASLTIADLQNYPIFRWEAETCSSLDRRLLARLPADPQNLQYVTSFEMMALWVSAGYGVGVSAQSRIKHAPGWGVSMRPLDDGPYEIVAHLHRPQGQANPVSERFERRALQIAKALPS</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-01-19" version="49" xmlns="http://uniprot.org/uniprot">
    <accession>A9BLT7</accession>
    <name>A9BLT7_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="8">Polysulphide reductase NrfD</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="8" type="ordered locus">Daci_4245</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="9" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the NrfD family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX36876.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012206048.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_4245"/>
    <dbReference type="EnsemblBacteria" id="ABX36876">
        <property type="protein sequence ID" value="ABX36876"/>
        <property type="gene ID" value="Daci_4245"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_4245"/>
    <dbReference type="eggNOG" id="COG3301">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_061956_0_0_4"/>
    <dbReference type="OMA" id="AVQYFFL"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005614">
        <property type="entry name" value="NrfD_fam"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03916">
        <property type="entry name" value="NrfD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="6 7" id="KW-0472">Membrane</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4 7" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="5 7" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="20"/>
            <end position="42"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="54"/>
            <end position="72"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="92"/>
            <end position="117"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="124"/>
            <end position="142"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="162"/>
            <end position="182"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="194"/>
            <end position="216"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="236"/>
            <end position="257"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="269"/>
            <end position="293"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="313"/>
            <end position="337"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00008929"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="ABX36876.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="347" mass="37244" checksum="AE4B312BA8C56493" modified="2008-01-15" version="1">MHIVELLTPAYESAWLPWAVQYFFLAGIATGAALLAAACAWAPRGSAMARLLPAAVLVLAVSAIAAPVSLLADLHQPARFWHFYAHFTPWSWMSVGALLLPVFVGLALAFVLAWWLGRPQWLRWLAPLLAVSALTITAYTGAELMAVRSRPLWNTLWVPLNLALTGWLATVGCMLVTARFLPARHRPDAGALQALRMLGLALALCLLAMVAVWAVAGWLGQGRSFQAALQLWQQFPVWRLSMLGSAVAGAALLWALVRGGQRMACPRYTLALGLGLAAAAWAFRWALFMGVQGVPKYGAGLYIYHMPLGGDGLLGMLGVAGLCIALVTLATWALELFPARSAAARAL</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="50" xmlns="http://uniprot.org/uniprot">
    <accession>A9BLV4</accession>
    <name>A9BLV4_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Daci_4262</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="2" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX36893.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012206065.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_4262"/>
    <dbReference type="PRIDE" id="A9BLV4"/>
    <dbReference type="EnsemblBacteria" id="ABX36893">
        <property type="protein sequence ID" value="ABX36893"/>
        <property type="gene ID" value="Daci_4262"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_4262"/>
    <dbReference type="eggNOG" id="COG0389">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_028184_0_0_4"/>
    <dbReference type="OMA" id="GRWWLHG"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043502">
        <property type="entry name" value="DNA/RNA_pol_sf"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56672">
        <property type="entry name" value="SSF56672"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ABX36893.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="502" mass="55026" checksum="4F0127D1E7DE31D4" modified="2008-01-15" version="1">MAQPNQALHWIAWPLHVAQGDGQGNGDSDGERSACAQQAWWALRWTPRVALWYGAGQAVALMEVGSVERLWGGRQAMLLGLLRALREQQPEGGQAGGPRMPFWARGATAWQALARLRWRMQGTDSRQPWPPADALPIWTLPALEPHAPALERMGCRRWGELRALPRAGLARRIGLPALLALDQAYGSSPHALDWLELPEHFALRADLGYPASDAQALLQAARPLLLALQAWLQARHQGVLGLQLRWHHDLRRVDGTQLPAWEALDIRTARPAQALEHMERLLRERLARTPWRAPADMLELVALDTAPFAADAGSCLPPAAPGPAPLGEAAGAADGAGAASGMAWHEWVERVSARRGAQGVRVAQLQSDHRPEAMQRWTPACEALQTPQATRRPAHARKAANPWQGLLPPWLLDPPQPLLLQGSRPCWQGPLQLLAGPYRLEAGWWGEPQADAALAVRDYFVASNAAVGHVWIYRERTPASERLPGMPALLSPAAWFAQGIYG</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="89" xmlns="http://uniprot.org/uniprot">
    <accession>A9BLW0</accession>
    <name>A9BLW0_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="4">Catalase</fullName>
            <ecNumber evidence="3">1.11.1.6</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="15" type="ordered locus">Daci_4268</name>
    </gene>
    <organism evidence="15 16">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="15 16" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="16">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="16" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="16">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="1 12">
            <name>heme</name>
            <dbReference type="ChEBI" id="CHEBI:30413"/>
        </cofactor>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the catalase family.</text>
    </comment>
    <dbReference type="EC" id="1.11.1.6" evidence="3"/>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX36899.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012206071.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_4268"/>
    <dbReference type="PRIDE" id="A9BLW0"/>
    <dbReference type="EnsemblBacteria" id="ABX36899">
        <property type="protein sequence ID" value="ABX36899"/>
        <property type="gene ID" value="Daci_4268"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_4268"/>
    <dbReference type="eggNOG" id="COG0753">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_010645_2_0_4"/>
    <dbReference type="OMA" id="QERMVWH"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004096">
        <property type="term" value="F:catalase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0020037">
        <property type="term" value="F:heme binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0042744">
        <property type="term" value="P:hydrogen peroxide catabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006979">
        <property type="term" value="P:response to oxidative stress"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd08156">
        <property type="entry name" value="catalase_clade_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018028">
        <property type="entry name" value="Catalase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR040333">
        <property type="entry name" value="Catalase_3"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR024708">
        <property type="entry name" value="Catalase_AS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR024711">
        <property type="entry name" value="Catalase_clade1/3"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011614">
        <property type="entry name" value="Catalase_core"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010582">
        <property type="entry name" value="Catalase_immune_responsive"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020835">
        <property type="entry name" value="Catalase_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11465">
        <property type="entry name" value="PTHR11465"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00199">
        <property type="entry name" value="Catalase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF06628">
        <property type="entry name" value="Catalase-rel"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF038928">
        <property type="entry name" value="Catalase_clade1-3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00067">
        <property type="entry name" value="CATALASE"/>
    </dbReference>
    <dbReference type="SMART" id="SM01060">
        <property type="entry name" value="Catalase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56634">
        <property type="entry name" value="SSF56634"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00438">
        <property type="entry name" value="CATALASE_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51402">
        <property type="entry name" value="CATALASE_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="6 12" id="KW-0349">Heme</keyword>
    <keyword evidence="10" id="KW-0376">Hydrogen peroxide</keyword>
    <keyword evidence="9 12" id="KW-0408">Iron</keyword>
    <keyword evidence="7 12" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="8 15" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="5 15" id="KW-0575">Peroxidase</keyword>
    <keyword evidence="16" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Catalase" evidence="14">
        <location>
            <begin position="6"/>
            <end position="390"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="13">
        <location>
            <begin position="1"/>
            <end position="23"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="13">
        <location>
            <begin position="1"/>
            <end position="22"/>
        </location>
    </feature>
    <feature type="active site" evidence="11">
        <location>
            <position position="53"/>
        </location>
    </feature>
    <feature type="active site" evidence="11">
        <location>
            <position position="126"/>
        </location>
    </feature>
    <feature type="binding site" description="axial binding residue" evidence="12">
        <location>
            <position position="336"/>
        </location>
        <ligand>
            <name>heme</name>
            <dbReference type="ChEBI" id="CHEBI:30413"/>
        </ligand>
        <ligandPart>
            <name>Fe</name>
            <dbReference type="ChEBI" id="CHEBI:18248"/>
        </ligandPart>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001971"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00005329"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00012314"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00014132"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022559"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022617"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00023002"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00023004"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00023324"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="PIRSR" id="PIRSR038928-1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="12">
        <source>
            <dbReference type="PIRSR" id="PIRSR038928-2"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="13">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="14">
        <source>
            <dbReference type="SMART" id="SM01060"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="15">
        <source>
            <dbReference type="EMBL" id="ABX36899.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="16">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="483" mass="54696" checksum="2E715F0146888205" modified="2008-01-15" version="1">MTHKLTTAAGAPVANNQDSLTAGPRGPMLLQDLWHLEKMAHFNREVIPERRMHAKGSGAFGTFTVTGDITRYTRAKVFSDIGKQTEVFARFSTVAGERGAADAERDIRGFAVKLYTEEGNWDLVGNNTPVFFFRDPLKFPDLNKAVKRDPYTNLRSPENNWDFWTGLPEALHQITIVMSDRGIPRGYRHMHGFGSHTYSFINASNERHWVKFHWVCQQGIENFTDSEAASVVASDRESSQRDLLEAIERGEFPRWKLCVQIMPEHEAETYRFHPFDLTKVWSKQDYPLIEVGVMELNRNPRNYHADVEQASFTPANLVPGIGPSPDRMLQSRLFSYGDAARYRLGVNHHQIPVNAPRCPYHAYHRDGAMRVDGNYGGTIAYEPNTKGEWQEQPAFAEPPLALHGAADRWNYREDDADYFTQPGDLFRLLTPDAQQRLFENTARNIAGVSEHIVQKHIAHCTQADPAYGKGVADAIARQKAGTL</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="75" xmlns="http://uniprot.org/uniprot">
    <accession>A9BMA2</accession>
    <name>A9BMA2_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="8">ABC transporter related</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="8" type="ordered locus">Daci_4818</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="9" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX37447.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012206617.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_4818"/>
    <dbReference type="PRIDE" id="A9BMA2"/>
    <dbReference type="EnsemblBacteria" id="ABX37447">
        <property type="protein sequence ID" value="ABX37447"/>
        <property type="gene ID" value="Daci_4818"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_4818"/>
    <dbReference type="eggNOG" id="COG0411">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_000604_1_2_4"/>
    <dbReference type="OMA" id="YLGSKDQ"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003593">
        <property type="entry name" value="AAA+_ATPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003439">
        <property type="entry name" value="ABC_transporter-like_ATP-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR032823">
        <property type="entry name" value="BCA_ABC_TP_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00005">
        <property type="entry name" value="ABC_tran"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12399">
        <property type="entry name" value="BCA_ABC_TP_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00382">
        <property type="entry name" value="AAA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50893">
        <property type="entry name" value="ABC_TRANSPORTER_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3 6" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="1" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="5" id="KW-0472">Membrane</keyword>
    <keyword evidence="2 6" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4" id="KW-1278">Translocase</keyword>
    <feature type="domain" description="ABC transporter" evidence="7">
        <location>
            <begin position="9"/>
            <end position="257"/>
        </location>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <begin position="41"/>
            <end position="48"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022967"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00434"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="PROSITE" id="PS50893"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="ABX37447.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="274" mass="29681" checksum="7A212A9375F15F19" modified="2008-01-15" version="1">MSQDSQPLLRIEGVSLRFGGIVALDSVSFDVAAGQICGLIGPNGAGKSSLFNCLSRLYAWQAGRIRFRGQPLATLARHRMAALGMGRTFQNLALFSSMTVADNVRLGTHSHQHAGFVRDALRLPGVRRREAEARAQAQSLMALLELTGVAERRVADLPFGTQKRVELARALACRPQLLLLDEPACGLNHEELAGLGDLILSLRDRLGLTVLLVEHHMGLVMRVSDKVVALNFGRKIAEGTPGEVRAHAEVIRAYLGSDMQPQDQDREVAHAGTA</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="79" xmlns="http://uniprot.org/uniprot">
    <accession>A9BMF8</accession>
    <name>A9BMF8_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Nitrogen regulatory protein P-II</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ordered locus">Daci_4874</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="6" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="4">Belongs to the P(II) protein family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX37503.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012206673.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_4874"/>
    <dbReference type="PRIDE" id="A9BMF8"/>
    <dbReference type="EnsemblBacteria" id="ABX37503">
        <property type="protein sequence ID" value="ABX37503"/>
        <property type="gene ID" value="Daci_4874"/>
    </dbReference>
    <dbReference type="GeneID" id="60689218"/>
    <dbReference type="KEGG" id="dac:Daci_4874"/>
    <dbReference type="eggNOG" id="COG0347">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_082268_0_0_4"/>
    <dbReference type="OMA" id="HQIEVNF"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030234">
        <property type="term" value="F:enzyme regulator activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006808">
        <property type="term" value="P:regulation of nitrogen utilization"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.70.120">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002187">
        <property type="entry name" value="N-reg_PII"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011322">
        <property type="entry name" value="N-reg_PII-like_a/b"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015867">
        <property type="entry name" value="N-reg_PII/ATP_PRibTrfase_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017918">
        <property type="entry name" value="N-reg_PII_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002332">
        <property type="entry name" value="N-reg_PII_urydylation_site"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30115">
        <property type="entry name" value="PTHR30115"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00543">
        <property type="entry name" value="P-II"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF039144">
        <property type="entry name" value="GlnB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00340">
        <property type="entry name" value="PIIGLNB"/>
    </dbReference>
    <dbReference type="SMART" id="SM00938">
        <property type="entry name" value="P-II"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54913">
        <property type="entry name" value="SSF54913"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00638">
        <property type="entry name" value="PII_GLNB_CTER"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51343">
        <property type="entry name" value="PII_GLNB_DOM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00496">
        <property type="entry name" value="PII_GLNB_UMP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="1 3" id="KW-0597">Phosphoprotein</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <feature type="modified residue" description="O-UMP-tyrosine" evidence="2">
        <location>
            <position position="51"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022553"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="PIRSR" id="PIRSR039144-50"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="PIRSR" id="PIRSR602187-50"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="RuleBase" id="RU003936"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="ABX37503.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="112" mass="12347" checksum="A529B10733EEE320" modified="2008-01-15" version="1">MKMITAIIKPFKLEEVREALADCGVNGLTVTEVKGFGRQKGHTELYRGAEYVVDFLPKVKIEVVVRTEDVDRCVDAIVNVARTGKIGDGKIFVTAVERVVRIRTGELDDGAI</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="79" xmlns="http://uniprot.org/uniprot">
    <accession>A9BMH7</accession>
    <name>A9BMH7_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">(2Fe-2S)-binding domain protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_4893</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX37522.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012206692.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_4893"/>
    <dbReference type="PRIDE" id="A9BMH7"/>
    <dbReference type="EnsemblBacteria" id="ABX37522">
        <property type="protein sequence ID" value="ABX37522"/>
        <property type="gene ID" value="Daci_4893"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_4893"/>
    <dbReference type="eggNOG" id="COG2080">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_052511_3_0_4"/>
    <dbReference type="OMA" id="YCQSGMV"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051536">
        <property type="term" value="F:iron-sulfur cluster binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016491">
        <property type="term" value="F:oxidoreductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd00207">
        <property type="entry name" value="fer2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.10.20.30">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002888">
        <property type="entry name" value="2Fe-2S-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036884">
        <property type="entry name" value="2Fe-2S-bd_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036010">
        <property type="entry name" value="2Fe-2S_ferredoxin-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001041">
        <property type="entry name" value="2Fe-2S_ferredoxin-type"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012675">
        <property type="entry name" value="Beta-grasp_dom_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00111">
        <property type="entry name" value="Fer2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01799">
        <property type="entry name" value="Fer2_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47741">
        <property type="entry name" value="SSF47741"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54292">
        <property type="entry name" value="SSF54292"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51085">
        <property type="entry name" value="2FE2S_FER_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="2Fe-2S ferredoxin-type" evidence="1">
        <location>
            <begin position="1"/>
            <end position="75"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS51085"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX37522.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="148" mass="15947" checksum="CBB64E24F742636D" modified="2008-01-15" version="1">MKFTLNSRSVAFDGDGQTPLLWVLRDHFKLPGTKFGCGISMCGACTVHVDGEPVRSCVLPVSTVGGKAVTTIEGLSSNRSHPIQKAWMDKDVPQCGYCQSGMVMAAAALLKTHPQPTDAQIDEAMTNLCRCATYHRIREAIHAAASKQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="99" xmlns="http://uniprot.org/uniprot">
    <accession>A9BMN9</accession>
    <name>A9BMN9_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="7">Serine hydroxymethyltransferase</fullName>
            <shortName evidence="7">SHMT</shortName>
            <shortName evidence="7">Serine methylase</shortName>
            <ecNumber evidence="7">2.1.2.1</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="7" type="primary">glyA</name>
        <name evidence="10" type="ordered locus">Daci_4955</name>
    </gene>
    <organism evidence="10 11">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="10 11" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="11">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="11" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="11">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="7">Catalyzes the reversible interconversion of serine and glycine with tetrahydrofolate (THF) serving as the one-carbon carrier. This reaction serves as the major source of one-carbon groups required for the biosynthesis of purines, thymidylate, methionine, and other important biomolecules. Also exhibits THF-independent aldolase activity toward beta-hydroxyamino acids, producing glycine and aldehydes, via a retro-aldol mechanism.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="7">
            <text>(6R)-5,10-methylene-5,6,7,8-tetrahydrofolate + glycine + H2O = (6S)-5,6,7,8-tetrahydrofolate + L-serine</text>
            <dbReference type="Rhea" id="RHEA:15481"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:15636"/>
            <dbReference type="ChEBI" id="CHEBI:33384"/>
            <dbReference type="ChEBI" id="CHEBI:57305"/>
            <dbReference type="ChEBI" id="CHEBI:57453"/>
            <dbReference type="EC" id="2.1.2.1"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="1 7 8">
            <name>pyridoxal 5'-phosphate</name>
            <dbReference type="ChEBI" id="CHEBI:597326"/>
        </cofactor>
    </comment>
    <comment type="pathway">
        <text evidence="2 7">Amino-acid biosynthesis; glycine biosynthesis; glycine from L-serine: step 1/1.</text>
    </comment>
    <comment type="pathway">
        <text evidence="7">One-carbon metabolism; tetrahydrofolate interconversion.</text>
    </comment>
    <comment type="subunit">
        <text evidence="7">Homodimer.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="7">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="3 7">Belongs to the SHMT family.</text>
    </comment>
    <comment type="caution">
        <text evidence="7">Lacks conserved residue(s) required for the propagation of feature annotation.</text>
    </comment>
    <dbReference type="EC" id="2.1.2.1" evidence="7"/>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX37584.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012206754.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_4955"/>
    <dbReference type="PRIDE" id="A9BMN9"/>
    <dbReference type="EnsemblBacteria" id="ABX37584">
        <property type="protein sequence ID" value="ABX37584"/>
        <property type="gene ID" value="Daci_4955"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_4955"/>
    <dbReference type="eggNOG" id="COG0112">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_022477_2_1_4"/>
    <dbReference type="OMA" id="CATTHKV"/>
    <dbReference type="UniPathway" id="UPA00193"/>
    <dbReference type="UniPathway" id="UPA00288">
        <property type="reaction ID" value="UER01023"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004372">
        <property type="term" value="F:glycine hydroxymethyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008168">
        <property type="term" value="F:methyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030170">
        <property type="term" value="F:pyridoxal phosphate binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0019264">
        <property type="term" value="P:glycine biosynthetic process from serine"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0032259">
        <property type="term" value="P:methylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0035999">
        <property type="term" value="P:tetrahydrofolate interconversion"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniPathway"/>
    </dbReference>
    <dbReference type="CDD" id="cd00378">
        <property type="entry name" value="SHMT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.640.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.1150.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00051">
        <property type="entry name" value="SHMT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015424">
        <property type="entry name" value="PyrdxlP-dep_Trfase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015421">
        <property type="entry name" value="PyrdxlP-dep_Trfase_major"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015422">
        <property type="entry name" value="PyrdxlP-dep_Trfase_small"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001085">
        <property type="entry name" value="Ser_HO-MeTrfase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019798">
        <property type="entry name" value="Ser_HO-MeTrfase_PLP_BS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR039429">
        <property type="entry name" value="SHMT-like_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11680">
        <property type="entry name" value="PTHR11680"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00464">
        <property type="entry name" value="SHMT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF000412">
        <property type="entry name" value="SHMT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53383">
        <property type="entry name" value="SSF53383"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00096">
        <property type="entry name" value="SHMT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="7" id="KW-0028">Amino-acid biosynthesis</keyword>
    <keyword evidence="7" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="10" id="KW-0489">Methyltransferase</keyword>
    <keyword evidence="4 7" id="KW-0554">One-carbon metabolism</keyword>
    <keyword evidence="6 7 8" id="KW-0663">Pyridoxal phosphate</keyword>
    <keyword evidence="11" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="5 7 10" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="SHMT" evidence="9">
        <location>
            <begin position="9"/>
            <end position="380"/>
        </location>
    </feature>
    <feature type="region of interest" description="Substrate binding" evidence="7">
        <location>
            <begin position="125"/>
            <end position="127"/>
        </location>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <position position="35"/>
        </location>
        <ligand>
            <name>pyridoxal 5'-phosphate</name>
            <dbReference type="ChEBI" id="CHEBI:597326"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <position position="55"/>
        </location>
        <ligand>
            <name>pyridoxal 5'-phosphate</name>
            <dbReference type="ChEBI" id="CHEBI:597326"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <position position="57"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <position position="64"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <position position="65"/>
        </location>
        <ligand>
            <name>pyridoxal 5'-phosphate</name>
            <dbReference type="ChEBI" id="CHEBI:597326"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <position position="99"/>
        </location>
        <ligand>
            <name>pyridoxal 5'-phosphate</name>
            <dbReference type="ChEBI" id="CHEBI:597326"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <position position="121"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <position position="175"/>
        </location>
        <ligand>
            <name>pyridoxal 5'-phosphate</name>
            <dbReference type="ChEBI" id="CHEBI:597326"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <position position="203"/>
        </location>
        <ligand>
            <name>pyridoxal 5'-phosphate</name>
            <dbReference type="ChEBI" id="CHEBI:597326"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <position position="228"/>
        </location>
        <ligand>
            <name>pyridoxal 5'-phosphate</name>
            <dbReference type="ChEBI" id="CHEBI:597326"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <position position="235"/>
        </location>
        <ligand>
            <name>pyridoxal 5'-phosphate</name>
            <dbReference type="ChEBI" id="CHEBI:597326"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <position position="360"/>
        </location>
        <ligand>
            <name>pyridoxal 5'-phosphate</name>
            <dbReference type="ChEBI" id="CHEBI:597326"/>
        </ligand>
    </feature>
    <feature type="modified residue" description="N6-(pyridoxal phosphate)lysine" evidence="7 8">
        <location>
            <position position="229"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001933"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00004697"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00006376"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022563"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022898"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00051"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="PIRSR" id="PIRSR000412-50"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="9">
        <source>
            <dbReference type="Pfam" id="PF00464"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="EMBL" id="ABX37584.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="415" mass="44657" checksum="136175BACDB11C3B" modified="2008-01-15" version="1">MFQRTNTVEKVDAEVFAAIQAENLRQQEHIELIASENYCSPAVMEAQGSQLTNKYAEGYPGKRYYGGCENVDVVEQLAIDRVKKLFGAEAANVQPNSGSQANQAVLMAFAKPGDTIMGMSLAEGGHLTHGMPLNMSGKWFNVVSYGLNAEEAIDYDKMEALAREHKPRIIVAGASAYALAIDFERFAKIAKEVGAIFWVDMAHYAGLIAAGVYPNPVPHADVVTTTTHKSLRGPRGGVILMKAEHEKAINSAIFPGLQGGPLMHVIAGKAVAFKEALSPEFKTYQEQVVKNAKVVAETLTARGLRIVSGRTESHVMLVDLRAKGITGKAAEAALGAAHMTINKNSIPNDPEKPMVTSGIRVGTPAMTTRGFKEEEARLTANLLADVLENPADEANLARVRAQVAELTARFPVYGA</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="75" xmlns="http://uniprot.org/uniprot">
    <accession>A9BMR2</accession>
    <name>A9BMR2_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Transcriptional regulator, LysR family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Daci_4978</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="4" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the LysR transcriptional regulatory family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX37607.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012206777.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_4978"/>
    <dbReference type="PRIDE" id="A9BMR2"/>
    <dbReference type="EnsemblBacteria" id="ABX37607">
        <property type="protein sequence ID" value="ABX37607"/>
        <property type="gene ID" value="Daci_4978"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_4978"/>
    <dbReference type="eggNOG" id="COG0583">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_039613_6_1_4"/>
    <dbReference type="OMA" id="SWLPHYM"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003700">
        <property type="term" value="F:DNA-binding transcription factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005119">
        <property type="entry name" value="LysR_subst-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000847">
        <property type="entry name" value="Tscrpt_reg_HTH_LysR"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036390">
        <property type="entry name" value="WH_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00126">
        <property type="entry name" value="HTH_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03466">
        <property type="entry name" value="LysR_substrate"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46785">
        <property type="entry name" value="SSF46785"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50931">
        <property type="entry name" value="HTH_LYSR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HTH lysR-type" evidence="2">
        <location>
            <begin position="1"/>
            <end position="58"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00009437"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS50931"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ABX37607.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="309" mass="33911" checksum="52E5A258CEE97A19" modified="2008-01-15" version="1">MNIRFLETFVLLARIGSVRRVAELVHASPGAVSMRIRGLESDLGVTLFHWDRKTLQITDAGARLLRHAEAVIEATRTLERAARSDDAIGCRLRVGVLETAVHTFLPEFVKAMGASLPHIELDLTVDLSTHLSEQMMRRDLDLIVRTGSGVDPQFAVVENLLEVPVHWIARRGLVPRKDGLHKALGKQLLTQMRGTGPYEQAVAMAQQLAVQNGMVSSDLRISGSPSLAALVSLVREGLGVAIMHGMLVAPQLESGELVELELPTPPSFRITTWYPKSPSPGVTDTAQVLRRVCKSYCKRVSPHLARYIG</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="39" xmlns="http://uniprot.org/uniprot">
    <accession>A9BMT2</accession>
    <name>A9BMT2_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Daci_4998</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="2" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX37627.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012206797.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_4998"/>
    <dbReference type="PRIDE" id="A9BMT2"/>
    <dbReference type="EnsemblBacteria" id="ABX37627">
        <property type="protein sequence ID" value="ABX37627"/>
        <property type="gene ID" value="Daci_4998"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_4998"/>
    <dbReference type="eggNOG" id="COG1633">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_975616_0_0_4"/>
    <dbReference type="OMA" id="HARLGEC"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ABX37627.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="284" mass="32293" checksum="29D42D8C95358F13" modified="2008-01-15" version="1">MESSSLERPTSRPIVPTVLSNLWQKAKPARPGLMYPSTPRTLGEPVDAYWHDRYFLEPYFVAGRGYDKYRPAYALGWKASLEPEYAQQDFDDVEFELEERWEQVRGSSLLRWSQVREAVEASWLQARQRTPTQPVATTLELQSTALLNAVLALGRQAHARLGECMDPMPQGLIGQVLARHFNASQILVEDLERAIGSSGGVVLPVRDSRAALRRNAFWDGLLGREEGADYVLDQAESCQQQWLSAYEAAEQSRLPGPLSEVLHRQSLMLRGQIEAIHWLRRYML</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="34" xmlns="http://uniprot.org/uniprot">
    <accession>A9BN21</accession>
    <name>A9BN21_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_5087</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX37716.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_5087"/>
    <dbReference type="PRIDE" id="A9BN21"/>
    <dbReference type="EnsemblBacteria" id="ABX37716">
        <property type="protein sequence ID" value="ABX37716"/>
        <property type="gene ID" value="Daci_5087"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_5087"/>
    <dbReference type="HOGENOM" id="CLU_211870_2_0_4"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="15"/>
            <end position="33"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX37716.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="49" mass="5700" checksum="1AE4D9DCCBD68C39" modified="2008-01-15" version="1">MTTSTRPRSRILRRLALWAAVLLVLGLVFMLYLQPQFMLGMADQIWACF</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="48" xmlns="http://uniprot.org/uniprot">
    <accession>A9BN37</accession>
    <name>A9BN37_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Daci_5103</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="4" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX37732.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012206902.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_5103"/>
    <dbReference type="PRIDE" id="A9BN37"/>
    <dbReference type="EnsemblBacteria" id="ABX37732">
        <property type="protein sequence ID" value="ABX37732"/>
        <property type="gene ID" value="Daci_5103"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_5103"/>
    <dbReference type="eggNOG" id="ENOG50349BB">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_1486753_0_0_4"/>
    <dbReference type="OMA" id="NTYEGPR"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="2" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="140"/>
            <end position="170"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="76"/>
            <end position="121"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="91"/>
            <end position="109"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ABX37732.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="181" mass="19113" checksum="04103051F0230DBA" modified="2008-01-15" version="1">MSQNTYEGPRHGDYVRYVDELLRASPLYRSAAHGWMAQGRSDFTDAVATPGAQSQSVVERVREQVQAAAEKARIAAQQASMPALPGRQPSAGDRHGDRNGDRNGGRADRGRQAARAQQAQASSAAKAVKKTVFTIGPGQLLGIVIGLILAVVIPGIGPFILLLTIINAIVKGFRSGLKSSG</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="92" xmlns="http://uniprot.org/uniprot">
    <accession>A9BN65</accession>
    <name>A9BN65_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="2 5">DNA mismatch repair protein MutL</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="5" type="primary">mutL</name>
        <name evidence="9" type="ordered locus">Daci_5131</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="9 10" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="10" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="5">This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. May act as a 'molecular matchmaker', a protein that promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex.</text>
    </comment>
    <comment type="similarity">
        <text evidence="1 5">Belongs to the DNA mismatch repair MutL/HexB family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX37760.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012206930.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_5131"/>
    <dbReference type="PRIDE" id="A9BN65"/>
    <dbReference type="EnsemblBacteria" id="ABX37760">
        <property type="protein sequence ID" value="ABX37760"/>
        <property type="gene ID" value="Daci_5131"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_5131"/>
    <dbReference type="eggNOG" id="COG0323">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_004131_4_2_4"/>
    <dbReference type="OMA" id="AHERIMY"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0032300">
        <property type="term" value="C:mismatch repair complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016887">
        <property type="term" value="F:ATP hydrolysis activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0140664">
        <property type="term" value="F:ATP-dependent DNA damage sensor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030983">
        <property type="term" value="F:mismatched DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006298">
        <property type="term" value="P:mismatch repair"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.1370.100">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.1540.20">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.230.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.565.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00149">
        <property type="entry name" value="DNA_mis_repair"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014762">
        <property type="entry name" value="DNA_mismatch_repair_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020667">
        <property type="entry name" value="DNA_mismatch_repair_MutL"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002099">
        <property type="entry name" value="DNA_mismatch_repair_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013507">
        <property type="entry name" value="DNA_mismatch_S5_2-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036890">
        <property type="entry name" value="HATPase_C_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038973">
        <property type="entry name" value="MutL/Mlh/Pms"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014790">
        <property type="entry name" value="MutL_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR042120">
        <property type="entry name" value="MutL_C_dimsub"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR042121">
        <property type="entry name" value="MutL_C_regsub"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037198">
        <property type="entry name" value="MutL_C_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020568">
        <property type="entry name" value="Ribosomal_S5_D2-typ_fold"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014721">
        <property type="entry name" value="Ribosomal_S5_D2-typ_fold_subgr"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10073">
        <property type="entry name" value="PTHR10073"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01119">
        <property type="entry name" value="DNA_mis_repair"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08676">
        <property type="entry name" value="MutL_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM01340">
        <property type="entry name" value="DNA_mis_repair"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00853">
        <property type="entry name" value="MutL_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF118116">
        <property type="entry name" value="SSF118116"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54211">
        <property type="entry name" value="SSF54211"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55874">
        <property type="entry name" value="SSF55874"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00585">
        <property type="entry name" value="mutl"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00058">
        <property type="entry name" value="DNA_MISMATCH_REPAIR_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3 5" id="KW-0227">DNA damage</keyword>
    <keyword evidence="4 5" id="KW-0234">DNA repair</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="DNA_mis_repair" evidence="8">
        <location>
            <begin position="223"/>
            <end position="341"/>
        </location>
    </feature>
    <feature type="domain" description="MutL_C" evidence="7">
        <location>
            <begin position="486"/>
            <end position="630"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="6">
        <location>
            <begin position="449"/>
            <end position="471"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00006082"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00021975"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022763"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023204"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00149"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="SMART" id="SM00853"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="SMART" id="SM01340"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="ABX37760.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="674" mass="72224" checksum="B355A051CB639C54" modified="2008-01-15" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="64" xmlns="http://uniprot.org/uniprot">
    <accession>A9BN81</accession>
    <name>A9BN81_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">Hydrolase_4 domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Daci_5147</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="4" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX37776.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_5147"/>
    <dbReference type="PRIDE" id="A9BN81"/>
    <dbReference type="EnsemblBacteria" id="ABX37776">
        <property type="protein sequence ID" value="ABX37776"/>
        <property type="gene ID" value="Daci_5147"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_5147"/>
    <dbReference type="eggNOG" id="COG1073">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_029375_2_1_4"/>
    <dbReference type="OMA" id="WNLTGQL"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.1820">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029058">
        <property type="entry name" value="AB_hydrolase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000073">
        <property type="entry name" value="AB_hydrolase_1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR022742">
        <property type="entry name" value="Hydrolase_4"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12146">
        <property type="entry name" value="Hydrolase_4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00111">
        <property type="entry name" value="ABHYDROLASE"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53474">
        <property type="entry name" value="SSF53474"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Hydrolase_4" evidence="2">
        <location>
            <begin position="126"/>
            <end position="233"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="21"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF12146"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ABX37776.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="336" mass="36222" checksum="07CBBA019BA2F39B" modified="2008-01-15" version="1">MSAREPAARIAPIHDSAGPQGSGAELLAGPCIHCCVMPSMLPFLWPRRRLHRITAALGVAALLAASGCSVLDTKQREWIFQPSDRSWPGANTAGMEDVWIDMPAQDGARLHALWLPQPATAGNAPVLLYLHGARWNVAGSSPRIRRLHELGFSVLAIDYRGFGKSSAGLPSEESAAEDARAGWDWLGRHAPDRPRFIFGHSLGGAIAIDLARSVQDEAGVMVEATFTSIPDVVRSFRWGWLPVGPLITQRFASIDKVAGIGSPLLVVHGSADPLIPATLGRQLFDAASEPKRFVLIEGGNHHNTQSRAMEQYRQALDELFGLRLLAQAPTAPASPR</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="59" xmlns="http://uniprot.org/uniprot">
    <accession>A9BN83</accession>
    <name>A9BN83_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Ankyrin</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_5149</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX37778.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_5149"/>
    <dbReference type="PRIDE" id="A9BN83"/>
    <dbReference type="EnsemblBacteria" id="ABX37778">
        <property type="protein sequence ID" value="ABX37778"/>
        <property type="gene ID" value="Daci_5149"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_5149"/>
    <dbReference type="eggNOG" id="COG0666">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_032709_0_0_4"/>
    <dbReference type="OMA" id="NQAVFRG"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.25.40.20">
        <property type="match status" value="3"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002110">
        <property type="entry name" value="Ankyrin_rpt"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036770">
        <property type="entry name" value="Ankyrin_rpt-contain_sf"/>
    </dbReference>
    <dbReference type="SMART" id="SM00248">
        <property type="entry name" value="ANK"/>
        <property type="match status" value="4"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48403">
        <property type="entry name" value="SSF48403"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50088">
        <property type="entry name" value="ANK_REPEAT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0040">ANK repeat</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="repeat" description="ANK" evidence="1">
        <location>
            <begin position="315"/>
            <end position="347"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00023"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX37778.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="589" mass="62737" checksum="7EE83A89CC106E80" modified="2008-01-15" version="1"> </sequence>
</entry>
<entry dataset="Swiss-Prot" created="2009-04-14" modified="2022-08-03" version="65" xmlns="http://uniprot.org/uniprot">
    <accession>A9BNG4</accession>
    <name>GRPE_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Protein GrpE</fullName>
        </recommendedName>
        <alternativeName>
            <fullName evidence="1">HSP-70 cofactor</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="1" type="primary">grpE</name>
        <name type="ordered locus">Daci_5230</name>
    </gene>
    <organism>
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference key="1">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain>DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="1">Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins, in association with DnaK and GrpE. It is the nucleotide exchange factor for DnaK and may function as a thermosensor. Unfolded proteins bind initially to DnaJ; upon interaction with the DnaJ-bound protein, DnaK hydrolyzes its bound ATP, resulting in the formation of a stable complex. GrpE releases ADP from DnaK; ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions between DnaJ, DnaK and GrpE are required for fully efficient folding.</text>
    </comment>
    <comment type="subunit">
        <text evidence="1">Homodimer.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="1">Belongs to the GrpE family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX37859.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012207029.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A9BNG4"/>
    <dbReference type="SMR" id="A9BNG4"/>
    <dbReference type="STRING" id="398578.Daci_5230"/>
    <dbReference type="PRIDE" id="A9BNG4"/>
    <dbReference type="EnsemblBacteria" id="ABX37859">
        <property type="protein sequence ID" value="ABX37859"/>
        <property type="gene ID" value="Daci_5230"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_5230"/>
    <dbReference type="eggNOG" id="COG0576">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_057217_6_1_4"/>
    <dbReference type="OMA" id="YAYEKIA"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000774">
        <property type="term" value="F:adenyl-nucleotide exchange factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051087">
        <property type="term" value="F:chaperone binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0042803">
        <property type="term" value="F:protein homodimerization activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006457">
        <property type="term" value="P:protein folding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd00446">
        <property type="entry name" value="GrpE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.30.22.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.20.20">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01151">
        <property type="entry name" value="GrpE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000740">
        <property type="entry name" value="GrpE"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013805">
        <property type="entry name" value="GrpE_coiled_coil"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009012">
        <property type="entry name" value="GrpE_head"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR21237">
        <property type="entry name" value="PTHR21237"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01025">
        <property type="entry name" value="GrpE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00773">
        <property type="entry name" value="GRPEPROTEIN"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51064">
        <property type="entry name" value="SSF51064"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF58014">
        <property type="entry name" value="SSF58014"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01071">
        <property type="entry name" value="GRPE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword id="KW-0143">Chaperone</keyword>
    <keyword id="KW-0963">Cytoplasm</keyword>
    <keyword id="KW-1185">Reference proteome</keyword>
    <keyword id="KW-0346">Stress response</keyword>
    <feature type="chain" id="PRO_1000137558" description="Protein GrpE">
        <location>
            <begin position="1"/>
            <end position="181"/>
        </location>
    </feature>
    <evidence type="ECO:0000255" key="1">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01151"/>
        </source>
    </evidence>
    <sequence length="181" mass="19643" checksum="02258372952726EB" modified="2008-01-15" version="1">MSEQNSNPLQDAAPEEIEAAMAANAADELQRLQTELAELKAKSAELADQFLRAKAEAENVRRRAEDEVSKARKFGIESFAESLLPVCDSLDAALAIQQATPEQLREGADATLRQLTSALERNKVVTINPAAGEKFDPNLHQAISMVPAQQEANTVVSVLQKGYLIADRILRPALVTVAQPQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="61" xmlns="http://uniprot.org/uniprot">
    <accession>A9BP88</accession>
    <name>A9BP88_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">5-oxoprolinase subunit A</fullName>
            <shortName evidence="1">5-OPase subunit A</shortName>
            <ecNumber evidence="1">3.5.2.9</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="1">5-oxoprolinase (ATP-hydrolyzing) subunit A</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="1" type="primary">pxpA</name>
        <name evidence="2" type="ordered locus">Daci_0005</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="1">Catalyzes the cleavage of 5-oxoproline to form L-glutamate coupled to the hydrolysis of ATP to ADP and inorganic phosphate.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>5-oxo-L-proline + ATP + 2 H2O = ADP + H(+) + L-glutamate + phosphate</text>
            <dbReference type="Rhea" id="RHEA:10348"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:29985"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:43474"/>
            <dbReference type="ChEBI" id="CHEBI:58402"/>
            <dbReference type="ChEBI" id="CHEBI:456216"/>
            <dbReference type="EC" id="3.5.2.9"/>
        </reaction>
    </comment>
    <comment type="subunit">
        <text evidence="1">Forms a complex composed of PxpA, PxpB and PxpC.</text>
    </comment>
    <comment type="similarity">
        <text evidence="1">Belongs to the LamB/PxpA family.</text>
    </comment>
    <dbReference type="EC" id="3.5.2.9" evidence="1"/>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX32652.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_0005"/>
    <dbReference type="PRIDE" id="A9BP88"/>
    <dbReference type="EnsemblBacteria" id="ABX32652">
        <property type="protein sequence ID" value="ABX32652"/>
        <property type="gene ID" value="Daci_0005"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_0005"/>
    <dbReference type="eggNOG" id="COG1540">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_069535_0_0_4"/>
    <dbReference type="OMA" id="MPGSVIC"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0017168">
        <property type="term" value="F:5-oxoprolinase (ATP-hydrolyzing) activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005975">
        <property type="term" value="P:carbohydrate metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00691">
        <property type="entry name" value="PxpA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011330">
        <property type="entry name" value="Glyco_hydro/deAcase_b/a-brl"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005501">
        <property type="entry name" value="LamB/YcsF/PxpA-like"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30292">
        <property type="entry name" value="PTHR30292"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03746">
        <property type="entry name" value="LamB_YcsF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF88713">
        <property type="entry name" value="SSF88713"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="1" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="1" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="1" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00691"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX32652.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="270" mass="28845" checksum="A458AE674354FC76" modified="2008-01-15" version="1">MPTTQGKNVKKTLIDLNSDMGESFGPWAIGDGVDQELMPLISSANIATGFHAGDPNIMRKTVLLARENGVGIGAHPGFRDLVGFGRRHINAPADELVNDMVYQLGALREFARLAGMTLQHIKPHGALYMHAARDEALSRALVTALQQIEPTLRLFCMESSVTFQVACELGQPVAREFYADRDYDLSGSIVFTRRVGALDPEAVAAKVLRACTEGVVRTVEGQDLAIGFDSVCIHSDTPGALALVQATRRALAKHGIEVAGFAGAAAPAQP</sequence>
</entry>
<entry dataset="Swiss-Prot" created="2009-04-14" modified="2022-08-03" version="74" xmlns="http://uniprot.org/uniprot">
    <accession>A9BPR9</accession>
    <name>RL4_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">50S ribosomal protein L4</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="1" type="primary">rplD</name>
        <name type="ordered locus">Daci_0392</name>
    </gene>
    <organism>
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference key="1">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain>DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="1">One of the primary rRNA binding proteins, this protein initially binds near the 5'-end of the 23S rRNA. It is important during the early stages of 50S assembly. It makes multiple contacts with different domains of the 23S rRNA in the assembled 50S subunit and ribosome.</text>
    </comment>
    <comment type="function">
        <text evidence="1">Forms part of the polypeptide exit tunnel.</text>
    </comment>
    <comment type="subunit">
        <text evidence="1">Part of the 50S ribosomal subunit.</text>
    </comment>
    <comment type="similarity">
        <text evidence="1">Belongs to the universal ribosomal protein uL4 family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX33038.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012202330.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A9BPR9"/>
    <dbReference type="SMR" id="A9BPR9"/>
    <dbReference type="STRING" id="398578.Daci_0392"/>
    <dbReference type="PRIDE" id="A9BPR9"/>
    <dbReference type="EnsemblBacteria" id="ABX33038">
        <property type="protein sequence ID" value="ABX33038"/>
        <property type="gene ID" value="Daci_0392"/>
    </dbReference>
    <dbReference type="GeneID" id="60690799"/>
    <dbReference type="KEGG" id="dac:Daci_0392"/>
    <dbReference type="eggNOG" id="COG0088">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_041575_5_2_4"/>
    <dbReference type="OMA" id="PQVHILE"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005840">
        <property type="term" value="C:ribosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0019843">
        <property type="term" value="F:rRNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003735">
        <property type="term" value="F:structural constituent of ribosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006412">
        <property type="term" value="P:translation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.1370.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01328_B">
        <property type="entry name" value="Ribosomal_L4_B"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002136">
        <property type="entry name" value="Ribosomal_L4/L1e"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023574">
        <property type="entry name" value="Ribosomal_L4_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013005">
        <property type="entry name" value="Ribosomal_uL4/L1e"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10746">
        <property type="entry name" value="PTHR10746"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00573">
        <property type="entry name" value="Ribosomal_L4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52166">
        <property type="entry name" value="SSF52166"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR03953">
        <property type="entry name" value="rplD_bact"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword id="KW-1185">Reference proteome</keyword>
    <keyword id="KW-0687">Ribonucleoprotein</keyword>
    <keyword id="KW-0689">Ribosomal protein</keyword>
    <keyword id="KW-0694">RNA-binding</keyword>
    <keyword id="KW-0699">rRNA-binding</keyword>
    <feature type="chain" id="PRO_1000142112" description="50S ribosomal protein L4">
        <location>
            <begin position="1"/>
            <end position="206"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="46"/>
            <end position="78"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="2">
        <location>
            <begin position="46"/>
            <end position="61"/>
        </location>
    </feature>
    <evidence type="ECO:0000255" key="1">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01328"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <sequence length="206" mass="23280" checksum="4EA236CCAE07010C" modified="2008-01-15" version="1">MQLELLNEQGQAASKFDAPETVFGREFNEDLVHQIVIAYRANARQGTRAQKDREQVRHTTAKPFKQKGTGRARAGMSSSPLWRGGGRIFPNLPEENFTQKINKKMYRAGMVAILSQLAREGRLAVVDSLKLESPKTKVLADKFKAMNLESVMVIAEEVDENLYLASRNLKNVFVVEPRYADPVSLVHYKKVLVTKGAIDKLKEMFE</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="74" xmlns="http://uniprot.org/uniprot">
    <accession>A9BQ57</accession>
    <name>A9BQ57_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">Flagellar P-ring protein</fullName>
        </recommendedName>
        <alternativeName>
            <fullName evidence="3">Basal body P-ring protein</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="3" type="primary">flgI</name>
        <name evidence="4" type="ordered locus">Daci_0626</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="5" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="1 3">Assembles around the rod to form the L-ring and probably protects the motor/basal body from shearing forces during rotation.</text>
    </comment>
    <comment type="subunit">
        <text evidence="3">The basal body constitutes a major portion of the flagellar organelle and consists of four rings (L,P,S, and M) mounted on a central rod.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="3">Periplasm</location>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="3">Bacterial flagellum basal body</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="3">Belongs to the FlgI family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX33272.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012202558.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_0626"/>
    <dbReference type="PRIDE" id="A9BQ57"/>
    <dbReference type="EnsemblBacteria" id="ABX33272">
        <property type="protein sequence ID" value="ABX33272"/>
        <property type="gene ID" value="Daci_0626"/>
    </dbReference>
    <dbReference type="GeneID" id="60690967"/>
    <dbReference type="KEGG" id="dac:Daci_0626"/>
    <dbReference type="eggNOG" id="COG1706">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_045235_1_0_4"/>
    <dbReference type="OMA" id="KTIQITR"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009428">
        <property type="term" value="C:bacterial-type flagellum basal body, distal rod, P ring"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030288">
        <property type="term" value="C:outer membrane-bounded periplasmic space"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005198">
        <property type="term" value="F:structural molecule activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0071973">
        <property type="term" value="P:bacterial-type flagellum-dependent cell motility"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00416">
        <property type="entry name" value="FlgI"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001782">
        <property type="entry name" value="Flag_FlgI"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30381">
        <property type="entry name" value="PTHR30381"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02119">
        <property type="entry name" value="FlgI"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR01010">
        <property type="entry name" value="FLGPRINGFLGI"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2 3" id="KW-0975">Bacterial flagellum</keyword>
    <keyword evidence="4" id="KW-0966">Cell projection</keyword>
    <keyword evidence="4" id="KW-0969">Cilium</keyword>
    <keyword evidence="4" id="KW-0282">Flagellum</keyword>
    <keyword evidence="3" id="KW-0574">Periplasm</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="3">
        <location>
            <begin position="1"/>
            <end position="34"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5009007252" description="Flagellar P-ring protein" evidence="3">
        <location>
            <begin position="35"/>
            <end position="382"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00002591"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023143"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00416"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="ABX33272.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="382" mass="39311" checksum="44D33E41A76D1FFD" modified="2008-01-15" version="1" precursor="true">MKVLSMLLTLRQAQRPFWVAAALGASMLTLPAHATRIKEVAAIQGVRSNQLTGYGLVVGLDGTGDQTTQMPYTKQALANYLEQMGISLPATGNSGQLQLKNVAAVIVTAELPAFAQPGQAIDVVVSSVGNAKSLKGGTLVATPLRGADGEIYALAQGNLVVGGAGASAGGSKVQINHLSAGRVPQGAQVERAVPTPINEGDSITLGLNATDFQTADKVVRAINQRMGQGVAQALDGRTVRVSAPQDPGSRVRMIAEIQEMPIETSKPSAKVVINARTGSIVLNQAVTLGPCAIAHGNLAITISTTPVISQPGAFSQGQTVVAQKSDIQIKQEPGNIINMPGSPQLTDVVRALNTLGATPQDLLAILQAIKAAGALNAELEVI</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="58" xmlns="http://uniprot.org/uniprot">
    <accession>A9BQ71</accession>
    <name>A9BQ71_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Flagellar assembly protein FliH</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ordered locus">Daci_0640</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="5" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX33286.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012202572.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_0640"/>
    <dbReference type="PRIDE" id="A9BQ71"/>
    <dbReference type="EnsemblBacteria" id="ABX33286">
        <property type="protein sequence ID" value="ABX33286"/>
        <property type="gene ID" value="Daci_0640"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_0640"/>
    <dbReference type="eggNOG" id="COG1317">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_062625_4_1_4"/>
    <dbReference type="OMA" id="WALPSFD"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018035">
        <property type="entry name" value="Flagellar_FliH/T3SS_HrpE"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02108">
        <property type="entry name" value="FliH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-0966">Cell projection</keyword>
    <keyword evidence="4" id="KW-0969">Cilium</keyword>
    <keyword evidence="4" id="KW-0282">Flagellum</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0813">Transport</keyword>
    <feature type="domain" description="FliH" evidence="3">
        <location>
            <begin position="159"/>
            <end position="284"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="50"/>
            <end position="85"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="127"/>
            <end position="146"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022448"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF02108"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="ABX33286.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="303" mass="32113" checksum="CE9DC1BB7994E061" modified="2008-01-15" version="1">MSNGMNSRFIPSEEIDERQVVQWRFGAVDHMGGLKSLPSLAGLPDIQGAPAASGAQAAHGGAGMARAPASASGFHSLSLPGRSDAPRLEADSMVLDVEADTPGAPASTAPAVDEEQLHALLEQARAEGHAEGLEQGRREAQQQWQQHMDDYVSGTGRETAQRVDALLSGLDAGFKQLQTDAAQELLNLACDIARQVVRQELRSQPQALLPVVREALDMLAADGRAATVRLNPADFAVLDEALRAEHGAQSKVQWISDASVAQGDVRVESGGAQVDAGMDKRWRRAVAALGLVSTWYDGERDAG</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="68" xmlns="http://uniprot.org/uniprot">
    <accession>A9BQB1</accession>
    <name>A9BQB1_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Transcriptional regulator, MarR family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_0875</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX33521.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012202807.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_0875"/>
    <dbReference type="PRIDE" id="A9BQB1"/>
    <dbReference type="EnsemblBacteria" id="ABX33521">
        <property type="protein sequence ID" value="ABX33521"/>
        <property type="gene ID" value="Daci_0875"/>
    </dbReference>
    <dbReference type="GeneID" id="60685442"/>
    <dbReference type="KEGG" id="dac:Daci_0875"/>
    <dbReference type="eggNOG" id="COG1846">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_083287_7_0_4"/>
    <dbReference type="OMA" id="WRQTHLG"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003700">
        <property type="term" value="F:DNA-binding transcription factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000835">
        <property type="entry name" value="HTH_MarR-typ"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036390">
        <property type="entry name" value="WH_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13463">
        <property type="entry name" value="HTH_27"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00347">
        <property type="entry name" value="HTH_MARR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46785">
        <property type="entry name" value="SSF46785"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HTH marR-type" evidence="1">
        <location>
            <begin position="50"/>
            <end position="144"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="SMART" id="SM00347"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX33521.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="166" mass="18055" checksum="347DB1F23A3ECBAC" modified="2008-01-15" version="1">MSEFSPVTPPADAWRQTHLGRLLGHAMRRFDARVLQLMARDVEVPLALSNLAARDKVGAAHIHITRHLSLAGDRLTDLAERAGMTKQSMGDLVAQCEAWGLVTRESDERDARARRIRFTPAGLAWLQAFHDAVSQAEAEFREEVGDDIATVVALGLEAYAGGGSLG</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="46" xmlns="http://uniprot.org/uniprot">
    <accession>A9BQG2</accession>
    <name>A9BQG2_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Abortive infection protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_0926</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX33572.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012202858.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_0926"/>
    <dbReference type="PRIDE" id="A9BQG2"/>
    <dbReference type="EnsemblBacteria" id="ABX33572">
        <property type="protein sequence ID" value="ABX33572"/>
        <property type="gene ID" value="Daci_0926"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_0926"/>
    <dbReference type="eggNOG" id="ENOG502ZAAA">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_082370_0_0_4"/>
    <dbReference type="OMA" id="FGWLYWK"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="35"/>
            <end position="55"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="75"/>
            <end position="95"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="116"/>
            <end position="141"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="161"/>
            <end position="185"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="197"/>
            <end position="218"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="230"/>
            <end position="250"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX33572.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="272" mass="29200" checksum="7376A259127A7AD0" modified="2008-01-15" version="1">MTDNASLPTTGPVSTLMPAPSAYVPPALPRLSWRIFTVLWLLGLPGVAAMAWFVLPDWMRLLGLPVEPLATPLAGIGVMAALLALPVGVGVWLGPRLGLSAPLLTTWVAGRSPQRAVRYLTLPGLAGGVVGAAWLVTLALAWPDDLTLIDPVYAMPLGAKILYAGITAELVMRLGGMTLVMWLLWRLSGRTDRRPGWMLGWWSVMLSALLWGLLQLALAWGTWGGLSDGLVLQLLLFEIVHGAVGGFLFWRYGLEAAMVAHAITYLLSHGLV</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="65" xmlns="http://uniprot.org/uniprot">
    <accession>A9BQX1</accession>
    <name>A9BQX1_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="7">Major facilitator superfamily MFS_1</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ordered locus">Daci_0280</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="8" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX32926.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_0280"/>
    <dbReference type="PRIDE" id="A9BQX1"/>
    <dbReference type="EnsemblBacteria" id="ABX32926">
        <property type="protein sequence ID" value="ABX32926"/>
        <property type="gene ID" value="Daci_0280"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_0280"/>
    <dbReference type="eggNOG" id="COG2814">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_001265_7_1_4"/>
    <dbReference type="OMA" id="WEIFAAI"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0022857">
        <property type="term" value="F:transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.1250.20">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010645">
        <property type="entry name" value="MFS_4"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020846">
        <property type="entry name" value="MFS_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036259">
        <property type="entry name" value="MFS_trans_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF06779">
        <property type="entry name" value="MFS_4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF103473">
        <property type="entry name" value="SSF103473"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50850">
        <property type="entry name" value="MFS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4 5" id="KW-0472">Membrane</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 5" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="3 5" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="7"/>
            <end position="26"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="46"/>
            <end position="64"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="76"/>
            <end position="95"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="101"/>
            <end position="125"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="137"/>
            <end position="157"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="163"/>
            <end position="180"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="201"/>
            <end position="219"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="251"/>
            <end position="270"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="282"/>
            <end position="300"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="306"/>
            <end position="324"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="336"/>
            <end position="358"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="364"/>
            <end position="384"/>
        </location>
    </feature>
    <feature type="domain" description="MFS" evidence="6">
        <location>
            <begin position="8"/>
            <end position="395"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="PROSITE" id="PS50850"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="ABX32926.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="395" mass="41853" checksum="580FEDFF3FADFB38" modified="2008-01-15" version="1">MIQRNETSLLLTGFMATLSGVGLARFAYTALMPQMVHAGWFSGEQVAYLGAANLLGYLIGALAAAPLAERLGALRVLLWCWVALALSFAACAWPLPMPWFFAWRCISGIGGAILMVLGPSVALAATPLQRRAALGPLMFCGIGAGALLSATLIPLLARQSLGAVWWALAAVCAWAGWLGWRHVRRLPAPAPIAITPHARPVPAAPLWTLPVVLVMLAYMTDAFGFVPHTVFWVDYLARELQLGDAYASTQWAVFGLGAIAGPLVASLCATRFGWWGTTTGAYAVKTLAIAMPLFWVGFAGHATSSFLVGALSPGMAAITSGYLMQLIGPAQHKRMWGYATAAFALMQAVSGYFMAWSYAGLGSYQRLFVIGSVSLLLGTLMIAASRASARRQAAA</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="78" xmlns="http://uniprot.org/uniprot">
    <accession>A9BQY0</accession>
    <name>A9BQY0_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Transcriptional regulator, LysR family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Daci_0289</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="4" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the LysR transcriptional regulatory family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX32935.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012202228.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_0289"/>
    <dbReference type="PRIDE" id="A9BQY0"/>
    <dbReference type="EnsemblBacteria" id="ABX32935">
        <property type="protein sequence ID" value="ABX32935"/>
        <property type="gene ID" value="Daci_0289"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_0289"/>
    <dbReference type="eggNOG" id="COG0583">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_039613_6_0_4"/>
    <dbReference type="OMA" id="NYDAVAM"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003700">
        <property type="term" value="F:DNA-binding transcription factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005119">
        <property type="entry name" value="LysR_subst-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000847">
        <property type="entry name" value="Tscrpt_reg_HTH_LysR"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036390">
        <property type="entry name" value="WH_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00126">
        <property type="entry name" value="HTH_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03466">
        <property type="entry name" value="LysR_substrate"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46785">
        <property type="entry name" value="SSF46785"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50931">
        <property type="entry name" value="HTH_LYSR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HTH lysR-type" evidence="2">
        <location>
            <begin position="36"/>
            <end position="93"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00009437"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS50931"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ABX32935.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="339" mass="37737" checksum="BE2B9F8B4B5A3168" modified="2008-01-15" version="1">MLNKSNFGHIRYLALMPANTPESAPPVLHRSLLNRLRYKHLHMLVALGSSLNLHRASLSLAMSQPAATRMLREIEDMFGCQLFERLPRGMRPTALGAQLVRFAEASLNSLDRCAEDLAARRQGGYGYLSIGTIMGAAPDLVMTAVARMKAQSPQLRLRIMGDTSDQILRLLDQRRIDMAIARRSPAAHSSSYSFEELGNERLLVVVRSGHPLTRRRKLGWQELVGDWPWILQPATSPARIALDQLLQRLELPVPADIIECSSVYSMQQLVQLTDAVMLLSESALKDYLRMGLVRALPVCIDVPMAPFGILTRTDDAPTQEQQRFIALLRAQARGLAQAG</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="43" xmlns="http://uniprot.org/uniprot">
    <accession>A9BR26</accession>
    <name>A9BR26_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="4">DZANK-type domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="5" type="ordered locus">Daci_0335</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="6" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX32981.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_0335"/>
    <dbReference type="PRIDE" id="A9BR26"/>
    <dbReference type="EnsemblBacteria" id="ABX32981">
        <property type="protein sequence ID" value="ABX32981"/>
        <property type="gene ID" value="Daci_0335"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_0335"/>
    <dbReference type="HOGENOM" id="CLU_140817_0_0_4"/>
    <dbReference type="OMA" id="GCRASIA"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025874">
        <property type="entry name" value="DZR"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12773">
        <property type="entry name" value="DZR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0862">Zinc</keyword>
    <keyword evidence="2" id="KW-0863">Zinc-finger</keyword>
    <feature type="domain" description="DZANK-type" evidence="4">
        <location>
            <begin position="28"/>
            <end position="72"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022771"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022833"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="Pfam" id="PF12773"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="ABX32981.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="76" mass="7716" checksum="DD3B8A347AFE2E77" modified="2008-01-15" version="1">MQRLFGNHSRGGHHGGGAYRAAAVAAVCPGCRASIATSSRFCPQCGGAVLPQACRRCNASHPAGARFCGQCGQPTT</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="57" xmlns="http://uniprot.org/uniprot">
    <accession>A9BRB3</accession>
    <name>A9BRB3_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_0525</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX33171.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012202457.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_0525"/>
    <dbReference type="PRIDE" id="A9BRB3"/>
    <dbReference type="EnsemblBacteria" id="ABX33171">
        <property type="protein sequence ID" value="ABX33171"/>
        <property type="gene ID" value="Daci_0525"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_0525"/>
    <dbReference type="eggNOG" id="COG2847">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_100939_1_1_4"/>
    <dbReference type="OMA" id="MKMQQVP"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.40.1890">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007410">
        <property type="entry name" value="PCuAC"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036182">
        <property type="entry name" value="PCuAC_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR36302">
        <property type="entry name" value="PTHR36302"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04314">
        <property type="entry name" value="PCuAC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF110087">
        <property type="entry name" value="SSF110087"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="1">
        <location>
            <begin position="1"/>
            <end position="23"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5002733016" evidence="1">
        <location>
            <begin position="24"/>
            <end position="170"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX33171.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="170" mass="17734" checksum="A32DBEC8705409F4" modified="2008-01-15" version="1">MTLRQWTTPFLIAASLSMGLAHAHADAAHVKADAAWARASVPGQQATGAFMRLTAEEPLRLVGVESPAAGLAEVHEMKMEGDVMRMRAIDGLDLPKGVAVDLKPGGYHVMLQQLKSPLLKDSQVPITLVFKDAKGETSRLSLQVPVRAMAPGAAAAPAAGHGGGHAGHSH</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="70" xmlns="http://uniprot.org/uniprot">
    <accession>A9BRH6</accession>
    <name>A9BRH6_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Transcriptional regulator, IclR family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ordered locus">Daci_0691</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="6" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX33337.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012202623.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_0691"/>
    <dbReference type="PRIDE" id="A9BRH6"/>
    <dbReference type="EnsemblBacteria" id="ABX33337">
        <property type="protein sequence ID" value="ABX33337"/>
        <property type="gene ID" value="Daci_0691"/>
    </dbReference>
    <dbReference type="GeneID" id="60685247"/>
    <dbReference type="KEGG" id="dac:Daci_0691"/>
    <dbReference type="eggNOG" id="COG1414">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_062618_0_0_4"/>
    <dbReference type="OMA" id="FCRGHRD"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006355">
        <property type="term" value="P:regulation of transcription, DNA-templated"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.450.40">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029016">
        <property type="entry name" value="GAF-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014757">
        <property type="entry name" value="Tscrpt_reg_IclR_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005471">
        <property type="entry name" value="Tscrpt_reg_IclR_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036390">
        <property type="entry name" value="WH_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF09339">
        <property type="entry name" value="HTH_IclR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01614">
        <property type="entry name" value="IclR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00346">
        <property type="entry name" value="HTH_ICLR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46785">
        <property type="entry name" value="SSF46785"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51077">
        <property type="entry name" value="HTH_ICLR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51078">
        <property type="entry name" value="ICLR_ED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0804">Transcription</keyword>
    <keyword evidence="1" id="KW-0805">Transcription regulation</keyword>
    <feature type="domain" description="HTH iclR-type" evidence="3">
        <location>
            <begin position="10"/>
            <end position="72"/>
        </location>
    </feature>
    <feature type="domain" description="IclR-ED" evidence="4">
        <location>
            <begin position="73"/>
            <end position="256"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023015"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023163"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="PROSITE" id="PS51077"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="PROSITE" id="PS51078"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="ABX33337.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="260" mass="28879" checksum="CC41962AE75E734A" modified="2008-01-15" version="1">MNTEDSGKLVAALVRGISVLQCFSNKHQELSARELMDMTGLPKPTLFRLIDTLCELNLMRYSERLSKYVPGVGLLNLSSPVLARMHMRQFARPHMQELANHLEGQIQLAVGHGRQLCLVELANGLTNKVFLPEIGVHISLSRTATGRAYLLSLPEAEREAFIAELQADDPARAQQLRERLDDARRDLAEHGFCRSHGDLHREIQSIAVPMSTAKDGEYWVFSVSLPIYSPQSRALESDAGPRLITLVRLVEGMLGASSLS</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="55" xmlns="http://uniprot.org/uniprot">
    <accession>A9BS02</accession>
    <name>A9BS02_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="3">von Willebrand factor type A</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Daci_0766</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="4" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX33412.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012202698.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_0766"/>
    <dbReference type="PRIDE" id="A9BS02"/>
    <dbReference type="EnsemblBacteria" id="ABX33412">
        <property type="protein sequence ID" value="ABX33412"/>
        <property type="gene ID" value="Daci_0766"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_0766"/>
    <dbReference type="eggNOG" id="COG1840">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="eggNOG" id="COG2304">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_029847_1_0_4"/>
    <dbReference type="OMA" id="PGQNYIP"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.410">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002035">
        <property type="entry name" value="VWF_A"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036465">
        <property type="entry name" value="vWFA_dom_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00092">
        <property type="entry name" value="VWA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00327">
        <property type="entry name" value="VWA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53300">
        <property type="entry name" value="SSF53300"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50234">
        <property type="entry name" value="VWFA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="1">
        <location>
            <begin position="1"/>
            <end position="18"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5002735030" evidence="1">
        <location>
            <begin position="19"/>
            <end position="536"/>
        </location>
    </feature>
    <feature type="domain" description="VWFA" evidence="2">
        <location>
            <begin position="340"/>
            <end position="532"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS50234"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ABX33412.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="536" mass="56883" checksum="D3CF45101E771478" modified="2008-01-15" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2021-09-29" version="53" xmlns="http://uniprot.org/uniprot">
    <accession>A9BS15</accession>
    <name>A9BS15_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ordered locus">Daci_0779</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="5" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Periplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the UPF0065 (bug) family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX33425.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012202711.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_0779"/>
    <dbReference type="EnsemblBacteria" id="ABX33425">
        <property type="protein sequence ID" value="ABX33425"/>
        <property type="gene ID" value="Daci_0779"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_0779"/>
    <dbReference type="eggNOG" id="COG3181">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_045683_0_0_4"/>
    <dbReference type="OMA" id="YNTETDF"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0042597">
        <property type="term" value="C:periplasmic space"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.190.150">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005064">
        <property type="entry name" value="BUG"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR042100">
        <property type="entry name" value="Bug_dom1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR42928">
        <property type="entry name" value="PTHR42928"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03401">
        <property type="entry name" value="TctC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF017082">
        <property type="entry name" value="YflP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="3">
        <location>
            <begin position="1"/>
            <end position="31"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5002735032" evidence="3">
        <location>
            <begin position="32"/>
            <end position="335"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004418"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00006987"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="ABX33425.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="335" mass="34578" checksum="10FDF267D5935BEF" modified="2008-01-15" version="1">MKALPSVLLPRRAIVAAACALAGAIALPAVAQGQASWPSHPVRLVVPFPASGATDLVARVVAQRMSQDLGQQLVIDNRPGAGGTIGAGEAAKASPDGYTLLFTTSSTHAISPHLMTRLAYKADKDFTPIAEIGGAASILLVTPSLPVRNVQELIAYAKAHPGALNYASSGNGTIVHLNAAAFAARAGLQLTHVPYKGTAQSITDLAAGQVHLLFDSIPTGMPHVASGRLRALAVTGDKRSALAPDLPTVAESGLPGYSSVTWFGVYGPAGMKPELVARINQAFNKAIQNPEVVASLAKQGVEAASPRTPAQFAAMVQADSARWAQVIKDNKITLD</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="80" xmlns="http://uniprot.org/uniprot">
    <accession>A9BS32</accession>
    <name>A9BS32_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="6">Transcriptional regulator, IclR family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ordered locus">Daci_0796</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="7" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX33442.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012202728.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_0796"/>
    <dbReference type="PRIDE" id="A9BS32"/>
    <dbReference type="EnsemblBacteria" id="ABX33442">
        <property type="protein sequence ID" value="ABX33442"/>
        <property type="gene ID" value="Daci_0796"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_0796"/>
    <dbReference type="eggNOG" id="COG1414">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_062618_4_0_4"/>
    <dbReference type="OMA" id="NHATRGV"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006355">
        <property type="term" value="P:regulation of transcription, DNA-templated"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.450.40">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029016">
        <property type="entry name" value="GAF-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014757">
        <property type="entry name" value="Tscrpt_reg_IclR_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005471">
        <property type="entry name" value="Tscrpt_reg_IclR_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036390">
        <property type="entry name" value="WH_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF09339">
        <property type="entry name" value="HTH_IclR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01614">
        <property type="entry name" value="IclR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00346">
        <property type="entry name" value="HTH_ICLR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46785">
        <property type="entry name" value="SSF46785"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51077">
        <property type="entry name" value="HTH_ICLR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51078">
        <property type="entry name" value="ICLR_ED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0804">Transcription</keyword>
    <keyword evidence="1" id="KW-0805">Transcription regulation</keyword>
    <feature type="domain" description="HTH iclR-type" evidence="4">
        <location>
            <begin position="24"/>
            <end position="86"/>
        </location>
    </feature>
    <feature type="domain" description="IclR-ED" evidence="5">
        <location>
            <begin position="87"/>
            <end position="268"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="3">
        <location>
            <begin position="1"/>
            <end position="21"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023015"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023163"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="PROSITE" id="PS51077"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="PROSITE" id="PS51078"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="ABX33442.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="268" mass="27792" checksum="20F9607C96BCEBE7" modified="2008-01-15" version="1">MASRSTNPNVRPADIPVSADDAGSRTLRRGLQVLDAVLAAGREGLRVADLCRATGLERATVYRLLSTLVDSGYVAHRGRFGYAAGHRLAATAASAGQPNMAVRLQPVLERVSAGCADAAFAIVREGAASHCIARHVGTHPVQILVIQVGTRQPLGVGAAGLALLAALPDAEVQAAMVANAPVLEQYGGMTLERMALLVKATRQRGWSVIGNHATRGVLAVGMAVRNAEGEPVAAVSVASTLERMPGERQKLIARSIGEALAALLPRGI</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="81" xmlns="http://uniprot.org/uniprot">
    <accession>A9BS43</accession>
    <name>A9BS43_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="7">Transcriptional regulator, TetR family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ordered locus">Daci_0807</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="8" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX33453.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012202739.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_0807"/>
    <dbReference type="PRIDE" id="A9BS43"/>
    <dbReference type="EnsemblBacteria" id="ABX33453">
        <property type="protein sequence ID" value="ABX33453"/>
        <property type="gene ID" value="Daci_0807"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_0807"/>
    <dbReference type="eggNOG" id="COG1309">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_069356_12_4_4"/>
    <dbReference type="OMA" id="GRQMFFG"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023772">
        <property type="entry name" value="DNA-bd_HTH_TetR-type_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009057">
        <property type="entry name" value="Homeobox-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001647">
        <property type="entry name" value="HTH_TetR"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041490">
        <property type="entry name" value="KstR2_TetR_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036271">
        <property type="entry name" value="Tet_transcr_reg_TetR-rel_C_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF17932">
        <property type="entry name" value="TetR_C_24"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00440">
        <property type="entry name" value="TetR_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00455">
        <property type="entry name" value="HTHTETR"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46689">
        <property type="entry name" value="SSF46689"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48498">
        <property type="entry name" value="SSF48498"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01081">
        <property type="entry name" value="HTH_TETR_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50977">
        <property type="entry name" value="HTH_TETR_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3 5" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0678">Repressor</keyword>
    <keyword evidence="4" id="KW-0804">Transcription</keyword>
    <keyword evidence="2" id="KW-0805">Transcription regulation</keyword>
    <feature type="domain" description="HTH tetR-type" evidence="6">
        <location>
            <begin position="11"/>
            <end position="71"/>
        </location>
    </feature>
    <feature type="DNA-binding region" description="H-T-H motif" evidence="5">
        <location>
            <begin position="34"/>
            <end position="53"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022491"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023015"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023163"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00335"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="PROSITE" id="PS50977"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="ABX33453.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="211" mass="23387" checksum="3F066CC4168ECF30" modified="2008-01-15" version="1">MARVRDPAGYDGQREMILSHAAQLFAQRGYAGTSMNEVAAACGVSKATLYHYVLDKHDLAVRIAEEHVLRLEALVNDTLQAHADPEQRLHALIRGFGQEYAQAQNAHRVLTEDVRFLREEDQQRILDVERRVVAAFAQTIAQVRGEPADSALGKPLAMLLFGMINWTFTWLKPGGTLDHDAIGTMVSQLFFGGVRAVSVPDGKKPRKARQA</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-01-19" version="34" xmlns="http://uniprot.org/uniprot">
    <accession>A9BSQ4</accession>
    <name>A9BSQ4_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Daci_1415</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="2" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX34059.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012203345.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="ABX34059">
        <property type="protein sequence ID" value="ABX34059"/>
        <property type="gene ID" value="Daci_1415"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_1415"/>
    <dbReference type="HOGENOM" id="CLU_188981_0_0_4"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ABX34059.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="89" mass="9785" checksum="6A5269809CF77067" modified="2008-01-15" version="1">MKQEVRPSSARTTQLTLAVAEMNAMVQSGCNEVSALSQLAQSWLQTPEGLRDPDVVISALRTIQHSAERLATSMDDEIHVLRNTARPEP</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="69" xmlns="http://uniprot.org/uniprot">
    <accession>A9BSS4</accession>
    <name>A9BSS4_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="4">Glutathione hydrolase proenzyme</fullName>
            <ecNumber evidence="4">2.3.2.2</ecNumber>
            <ecNumber evidence="4">3.4.19.13</ecNumber>
        </recommendedName>
        <component>
            <recommendedName>
                <fullName evidence="4">Glutathione hydrolase large chain</fullName>
            </recommendedName>
        </component>
        <component>
            <recommendedName>
                <fullName evidence="4">Glutathione hydrolase small chain</fullName>
            </recommendedName>
        </component>
    </protein>
    <gene>
        <name evidence="5" type="ordered locus">Daci_1435</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="6" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="2 4">
            <text>an S-substituted glutathione + H2O = an S-substituted L-cysteinylglycine + L-glutamate</text>
            <dbReference type="Rhea" id="RHEA:59468"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:29985"/>
            <dbReference type="ChEBI" id="CHEBI:90779"/>
            <dbReference type="ChEBI" id="CHEBI:143103"/>
            <dbReference type="EC" id="3.4.19.13"/>
        </reaction>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1 4">
            <text>an alpha-amino acid + an N-terminal (5-L-glutamyl)-[peptide] = 5-L-glutamyl amino acid + N-terminal L-alpha-aminoacyl-[peptide]</text>
            <dbReference type="Rhea" id="RHEA:23904"/>
            <dbReference type="Rhea" id="RHEA-COMP:9780"/>
            <dbReference type="Rhea" id="RHEA-COMP:9795"/>
            <dbReference type="ChEBI" id="CHEBI:77644"/>
            <dbReference type="ChEBI" id="CHEBI:78597"/>
            <dbReference type="ChEBI" id="CHEBI:78599"/>
            <dbReference type="ChEBI" id="CHEBI:78608"/>
            <dbReference type="EC" id="2.3.2.2"/>
        </reaction>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="3 4">
            <text>glutathione + H2O = L-cysteinylglycine + L-glutamate</text>
            <dbReference type="Rhea" id="RHEA:28807"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:29985"/>
            <dbReference type="ChEBI" id="CHEBI:57925"/>
            <dbReference type="ChEBI" id="CHEBI:61694"/>
            <dbReference type="EC" id="3.4.19.13"/>
        </reaction>
    </comment>
    <comment type="pathway">
        <text evidence="4">Sulfur metabolism; glutathione metabolism.</text>
    </comment>
    <comment type="subunit">
        <text evidence="4">This enzyme consists of two polypeptide chains, which are synthesized in precursor form from a single polypeptide.</text>
    </comment>
    <comment type="PTM">
        <text evidence="4">Cleaved by autocatalysis into a large and a small subunit.</text>
    </comment>
    <comment type="similarity">
        <text evidence="4">Belongs to the gamma-glutamyltransferase family.</text>
    </comment>
    <dbReference type="EC" id="2.3.2.2" evidence="4"/>
    <dbReference type="EC" id="3.4.19.13" evidence="4"/>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX34079.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012203365.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_1435"/>
    <dbReference type="MEROPS" id="T03.001"/>
    <dbReference type="PRIDE" id="A9BSS4"/>
    <dbReference type="EnsemblBacteria" id="ABX34079">
        <property type="protein sequence ID" value="ABX34079"/>
        <property type="gene ID" value="Daci_1435"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_1435"/>
    <dbReference type="eggNOG" id="COG0405">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_014813_0_1_4"/>
    <dbReference type="OMA" id="VCGMGPP"/>
    <dbReference type="UniPathway" id="UPA00204"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0036374">
        <property type="term" value="F:glutathione hydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0102953">
        <property type="term" value="F:hypoglycin A gamma-glutamyl transpeptidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0103068">
        <property type="term" value="F:leukotriene C4 gamma-glutamyl transferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006750">
        <property type="term" value="P:glutathione biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006751">
        <property type="term" value="P:glutathione catabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.246.130">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.60.20.40">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043138">
        <property type="entry name" value="GGT_lsub_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000101">
        <property type="entry name" value="GGT_peptidase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043137">
        <property type="entry name" value="GGT_ssub"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029055">
        <property type="entry name" value="Ntn_hydrolases_N"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56235">
        <property type="entry name" value="SSF56235"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00066">
        <property type="entry name" value="g_glut_trans"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4 5" id="KW-0012">Acyltransferase</keyword>
    <keyword evidence="4" id="KW-0317">Glutathione biosynthesis</keyword>
    <keyword evidence="4" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4 5" id="KW-0808">Transferase</keyword>
    <keyword evidence="4" id="KW-0865">Zymogen</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00000250"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00001049"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00001089"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="RuleBase" id="RU368036"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="ABX34079.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="662" mass="68194" checksum="C93A92A439F4F153" modified="2008-01-15" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="87" xmlns="http://uniprot.org/uniprot">
    <accession>A9BST1</accession>
    <name>A9BST1_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="5 10">Cysteine synthase</fullName>
            <ecNumber evidence="5 10">2.5.1.47</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="12" type="ordered locus">Daci_1442</name>
    </gene>
    <organism evidence="12 13">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="12 13" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="13">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="13" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="13">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="1 10">
            <text>hydrogen sulfide + O-acetyl-L-serine = acetate + L-cysteine</text>
            <dbReference type="Rhea" id="RHEA:14829"/>
            <dbReference type="ChEBI" id="CHEBI:29919"/>
            <dbReference type="ChEBI" id="CHEBI:30089"/>
            <dbReference type="ChEBI" id="CHEBI:35235"/>
            <dbReference type="ChEBI" id="CHEBI:58340"/>
            <dbReference type="EC" id="2.5.1.47"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="2 9 10">
            <name>pyridoxal 5'-phosphate</name>
            <dbReference type="ChEBI" id="CHEBI:597326"/>
        </cofactor>
    </comment>
    <comment type="pathway">
        <text evidence="3">Amino-acid biosynthesis; L-cysteine biosynthesis; L-cysteine from L-serine: step 2/2.</text>
    </comment>
    <comment type="similarity">
        <text evidence="4 10">Belongs to the cysteine synthase/cystathionine beta-synthase family.</text>
    </comment>
    <dbReference type="EC" id="2.5.1.47" evidence="5 10"/>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX34086.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012203372.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_1442"/>
    <dbReference type="PRIDE" id="A9BST1"/>
    <dbReference type="EnsemblBacteria" id="ABX34086">
        <property type="protein sequence ID" value="ABX34086"/>
        <property type="gene ID" value="Daci_1442"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_1442"/>
    <dbReference type="eggNOG" id="COG0031">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_021018_1_0_4"/>
    <dbReference type="OMA" id="FWDSGER"/>
    <dbReference type="UniPathway" id="UPA00136">
        <property type="reaction ID" value="UER00200"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004124">
        <property type="term" value="F:cysteine synthase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006535">
        <property type="term" value="P:cysteine biosynthetic process from serine"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.1100">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005856">
        <property type="entry name" value="Cys_synth"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005859">
        <property type="entry name" value="CysK"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001216">
        <property type="entry name" value="P-phosphate_BS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001926">
        <property type="entry name" value="PLP-dep"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036052">
        <property type="entry name" value="Trypto_synt_PLP_dependent"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00291">
        <property type="entry name" value="PALP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53686">
        <property type="entry name" value="SSF53686"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01139">
        <property type="entry name" value="cysK"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01136">
        <property type="entry name" value="cysKM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00901">
        <property type="entry name" value="CYS_SYNTHASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="10" id="KW-0028">Amino-acid biosynthesis</keyword>
    <keyword evidence="8 10" id="KW-0198">Cysteine biosynthesis</keyword>
    <keyword evidence="7 9 10" id="KW-0663">Pyridoxal phosphate</keyword>
    <keyword evidence="13" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="6 10" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="PALP" evidence="11">
        <location>
            <begin position="7"/>
            <end position="286"/>
        </location>
    </feature>
    <feature type="modified residue" description="N6-(pyridoxal phosphate)lysine" evidence="9">
        <location>
            <position position="42"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00000298"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00001933"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00004962"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00007103"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00012681"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022898"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00023192"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="PIRSR" id="PIRSR605856-51"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="RuleBase" id="RU003985"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="11">
        <source>
            <dbReference type="Pfam" id="PF00291"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="EMBL" id="ABX34086.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="13">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="305" mass="32058" checksum="5F0C406CFD79435E" modified="2008-01-15" version="1">MRADNILQTIGNTPHVRINRLFGAGANVWIKSERGNPGGSIKDRIALAMVEDAEKSGALQPGGTIIEPTSGNTGVGLALVAAVKGYKLVLVMPESMSIERRRLMLAYGASFDLTPKEKGMKGAIARAQELASQTPGAWIPQQFENPANIDVHVRTTAQEILADFPEGLDVLITGVGTGGHLTGVARVLKARFPQLKVFAVEPAASPVISGGQPSPHPIQGIGAGFVPKNLDTSLLDGVIQVEAEPAREYARRSAREEGILVGISSGATLAAIAQKLPELPAGAKVLGFNYDTGERYLSVEGFLPA</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="53" xmlns="http://uniprot.org/uniprot">
    <accession>A9BSX0</accession>
    <name>A9BSX0_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Addiction module killer protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Daci_1687</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="2" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX34330.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012203615.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_1687"/>
    <dbReference type="PRIDE" id="A9BSX0"/>
    <dbReference type="EnsemblBacteria" id="ABX34330">
        <property type="protein sequence ID" value="ABX34330"/>
        <property type="gene ID" value="Daci_1687"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_1687"/>
    <dbReference type="eggNOG" id="COG3657">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_152445_0_0_4"/>
    <dbReference type="OMA" id="NTIKHYL"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014056">
        <property type="entry name" value="Addiction_killer_pred"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR41791">
        <property type="entry name" value="PTHR41791"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF028744">
        <property type="entry name" value="Addict_mod_HI1419"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR02683">
        <property type="entry name" value="upstrm_HI1419"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ABX34330.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="98" mass="11232" checksum="094FAC75BDA69005" modified="2008-01-15" version="1">MYSVIETEAFADWVDSIRDIPTRIRLRRRLGKAMRGNLGDVKSVGEGLWEMREFFGPGWRMYYIQRDHVLIVMLGGGDKSSQAQDIAAARAMAREIKL</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="39" xmlns="http://uniprot.org/uniprot">
    <accession>A9BTD9</accession>
    <name>A9BTD9_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="3">TadE family protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Daci_2064</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="4" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX34704.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_2064"/>
    <dbReference type="PRIDE" id="A9BTD9"/>
    <dbReference type="EnsemblBacteria" id="ABX34704">
        <property type="protein sequence ID" value="ABX34704"/>
        <property type="gene ID" value="Daci_2064"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_2064"/>
    <dbReference type="eggNOG" id="COG4961">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_1649366_0_0_4"/>
    <dbReference type="OMA" id="GARMVQH"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012495">
        <property type="entry name" value="TadE"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07811">
        <property type="entry name" value="TadE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="2" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="41"/>
            <end position="62"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="20"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ABX34704.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="180" mass="18886" checksum="6241B6EED1BE749A" modified="2008-01-15" version="1">MKLPLSRFAPSPSLASREGGIRATGDTLAAGLRRRQRGVAAVEFALIAGVMVMLLMGMFVYWRVLQAQQSLARATGDGARMVQHLAFGGMAGYNPAKPAERANILQATSDVVNQSLAASGIPAGTAPTQIQIDWGTSQATLSVVYMLPPVLGQGLQVGSQTLGEPTRLESRSLIRLAPGS</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="57" xmlns="http://uniprot.org/uniprot">
    <accession>A9BTG7</accession>
    <name>A9BTG7_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Fatty acid hydroxylase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ordered locus">Daci_2296</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="5" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX34935.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012204218.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_2296"/>
    <dbReference type="PRIDE" id="A9BTG7"/>
    <dbReference type="EnsemblBacteria" id="ABX34935">
        <property type="protein sequence ID" value="ABX34935"/>
        <property type="gene ID" value="Daci_2296"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_2296"/>
    <dbReference type="eggNOG" id="COG3000">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_857763_0_0_4"/>
    <dbReference type="OMA" id="DITAYWI"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005506">
        <property type="term" value="F:iron ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016491">
        <property type="term" value="F:oxidoreductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008610">
        <property type="term" value="P:lipid biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006694">
        <property type="entry name" value="Fatty_acid_hydroxylase"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04116">
        <property type="entry name" value="FA_hydroxylase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0472">Membrane</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="2" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="81"/>
            <end position="107"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="127"/>
            <end position="146"/>
        </location>
    </feature>
    <feature type="domain" description="Fatty acid hydroxylase" evidence="3">
        <location>
            <begin position="132"/>
            <end position="274"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="334"/>
            <end position="374"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="354"/>
            <end position="374"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF04116"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="ABX34935.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="374" mass="42104" checksum="0254DB34A35067D2" modified="2008-01-15" version="1">MTSLTELWQAAITWLATHAVTPTVHWLDIAQAAGDPREIAEAVLIAGLQLFLIAGVMRPLESLFPAERWSDRRLTTVDRNYTLLMLLGLFPLFSFLVLMPFASMLGGGPAAEEATGLKHWVPWFADHPVALFLVYYVVYDLVYYWMHRAQHVIPWWWAMHSMHHSQRQMSCWSNDRSHYLDGMLQSFILATVGLAMGVEPSEFALLGLLSELVQNFSHANVRLRLGWLGRVGERVLVGPLFHRHHHMLRDPERPTRHNCNFGQVLPWWDMLFGTALYTDEPVRPTGVSDPEVDADNERGLVAMQWHTLKRFWGAFRRREGWRLGDVSFGPGYRPIHDDDGAQPHPAAGAAGATGTTEVASTAPGSAASAPRTSR</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="63" xmlns="http://uniprot.org/uniprot">
    <accession>A9BTJ1</accession>
    <name>A9BTJ1_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Molybdenum cofactor synthesis domain protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ordered locus">Daci_2321</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="5" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="pathway">
        <text evidence="1">Cofactor biosynthesis; molybdopterin biosynthesis.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX34959.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012204241.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_2321"/>
    <dbReference type="PRIDE" id="A9BTJ1"/>
    <dbReference type="EnsemblBacteria" id="ABX34959">
        <property type="protein sequence ID" value="ABX34959"/>
        <property type="gene ID" value="Daci_2321"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_2321"/>
    <dbReference type="eggNOG" id="COG0521">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_077358_1_0_4"/>
    <dbReference type="OMA" id="EYLTSEW"/>
    <dbReference type="UniPathway" id="UPA00344"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006777">
        <property type="term" value="P:Mo-molybdopterin cofactor biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd00886">
        <property type="entry name" value="MogA_MoaB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.980.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036425">
        <property type="entry name" value="MoaB/Mog-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001453">
        <property type="entry name" value="MoaB/Mog_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008284">
        <property type="entry name" value="MoCF_biosynth_CS"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00994">
        <property type="entry name" value="MoCF_biosynth"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00852">
        <property type="entry name" value="MoCF_biosynth"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53218">
        <property type="entry name" value="SSF53218"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00177">
        <property type="entry name" value="molyb_syn"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01078">
        <property type="entry name" value="MOCF_BIOSYNTHESIS_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0501">Molybdenum cofactor biosynthesis</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="MoCF_biosynth" evidence="3">
        <location>
            <begin position="12"/>
            <end position="157"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00005046"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023150"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="SMART" id="SM00852"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="ABX34959.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="201" mass="21287" checksum="29AB3719B49FAC5C" modified="2008-01-15" version="1">MSEPVHDAVRIGIVSISDRASSGVYEDKGLPALQDWLTRALRNPITFEPRLIPDEQAGISATLIELVDAGCSLVLTTGGTGPAPRDVTPEATLAVADKEMPGFGEQMRQISLAFVPTAILSRQVAVIRGKSLIINLPGQPKAIAETLEGLKNPDGKQKVNGIFAAVPYCVDLIGGPYLETDDSVCKAFRPKSAVRTARPAA</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="61" xmlns="http://uniprot.org/uniprot">
    <accession>A9BTJ3</accession>
    <name>A9BTJ3_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Peptidase U62 modulator of DNA gyrase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ordered locus">Daci_2323</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="6" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the peptidase U62 family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX34961.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012204243.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_2323"/>
    <dbReference type="PRIDE" id="A9BTJ3"/>
    <dbReference type="EnsemblBacteria" id="ABX34961">
        <property type="protein sequence ID" value="ABX34961"/>
        <property type="gene ID" value="Daci_2323"/>
    </dbReference>
    <dbReference type="GeneID" id="60686699"/>
    <dbReference type="KEGG" id="dac:Daci_2323"/>
    <dbReference type="eggNOG" id="COG0312">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_026425_0_0_4"/>
    <dbReference type="OMA" id="LYRKSTF"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008237">
        <property type="term" value="F:metallopeptidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006508">
        <property type="term" value="P:proteolysis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.2290.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045569">
        <property type="entry name" value="Metalloprtase-TldD/E_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045570">
        <property type="entry name" value="Metalloprtase-TldD/E_cen_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002510">
        <property type="entry name" value="Metalloprtase-TldD/E_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035068">
        <property type="entry name" value="TldD/PmbA_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036059">
        <property type="entry name" value="TldD/PmbA_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01523">
        <property type="entry name" value="PmbA_TldD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF19289">
        <property type="entry name" value="PmbA_TldD_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF19290">
        <property type="entry name" value="PmbA_TldD_M"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF111283">
        <property type="entry name" value="SSF111283"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="PmbA_TldD" evidence="2">
        <location>
            <begin position="54"/>
            <end position="110"/>
        </location>
    </feature>
    <feature type="domain" description="PmbA_TldD_M" evidence="4">
        <location>
            <begin position="140"/>
            <end position="249"/>
        </location>
    </feature>
    <feature type="domain" description="PmbA_TldD_C" evidence="3">
        <location>
            <begin position="257"/>
            <end position="468"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00005836"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF01523"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF19289"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="Pfam" id="PF19290"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="ABX34961.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="469" mass="49933" checksum="2AD0EE119E37107A" modified="2008-01-15" version="1">MKKPRPRSASTAKPQADSGFSYSQPFFEDLVDRALVHAKKLGATNAGAEASEGCGLSVSVRKGALETVERNRDKSLGVTVYLGNRRGNASTSDFSDAAIQQTVQAAYDIARFTAEDPMAGLPDAADIAQPGTHRDLQLFHPWDLTSEAAAELALQCEEAALRTHKRITNSEGAGVSAQQSHFFSAHTNGFRGGYASSRHSLSVAPIASLPGRNGEMQRDAWYSSMRNAADLASPEAVGRYAAQRALSRLGSRKIPTTECPVLFESTLAAGLLGSFVQAVSGGALYRRSTFLLDSLGKPVFPKHIDITEDPFILGGKGSSPFDEEGVRVQARKVVDAGRVEGYFLSSYSARKLGMKTTGNAGGSHNLVMTSRRTKAGDDLPAMLKKLGTGLFVIELMGQGVNYVTGDYSRGVSGFWVENGEIAFPVHEITIAGNLKDMLKGIEAVGADAYNYGAKTVGSILINRMKVAGS</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="50" xmlns="http://uniprot.org/uniprot">
    <accession>A9BTJ9</accession>
    <name>A9BTJ9_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="1">SpoVR family protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Daci_2329</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="2" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX34967.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012204249.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_2329"/>
    <dbReference type="PRIDE" id="A9BTJ9"/>
    <dbReference type="EnsemblBacteria" id="ABX34967">
        <property type="protein sequence ID" value="ABX34967"/>
        <property type="gene ID" value="Daci_2329"/>
    </dbReference>
    <dbReference type="GeneID" id="60686705"/>
    <dbReference type="KEGG" id="dac:Daci_2329"/>
    <dbReference type="eggNOG" id="COG2719">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_010179_3_0_4"/>
    <dbReference type="OMA" id="NSNPCYA"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007390">
        <property type="entry name" value="Spore_V_R"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30029">
        <property type="entry name" value="PTHR30029"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04293">
        <property type="entry name" value="SpoVR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ABX34967.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="542" mass="62556" checksum="F83AC42D53700415" modified="2008-01-15" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="70" xmlns="http://uniprot.org/uniprot">
    <accession>A9BTU8</accession>
    <name>A9BTU8_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Integrase family protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ordered locus">Daci_2724</name>
        <name evidence="5" type="ordered locus">Daci_2980</name>
    </gene>
    <organism evidence="4 6">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 6" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">DSM 14801 / SPH-1</strain>
            <strain evidence="4">SPH-1</strain>
        </source>
    </reference>
    <reference evidence="6" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="4" key="3">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="4">SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX35362.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX35618.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012204583.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_2724"/>
    <dbReference type="PRIDE" id="A9BTU8"/>
    <dbReference type="EnsemblBacteria" id="ABX35362">
        <property type="protein sequence ID" value="ABX35362"/>
        <property type="gene ID" value="Daci_2724"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="ABX35618">
        <property type="protein sequence ID" value="ABX35618"/>
        <property type="gene ID" value="Daci_2980"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_2724"/>
    <dbReference type="KEGG" id="dac:Daci_2980"/>
    <dbReference type="eggNOG" id="COG0582">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_042658_0_0_4"/>
    <dbReference type="OMA" id="GHRHAYG"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015074">
        <property type="term" value="P:DNA integration"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006310">
        <property type="term" value="P:DNA recombination"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.443.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011010">
        <property type="entry name" value="DNA_brk_join_enz"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013762">
        <property type="entry name" value="Integrase-like_cat_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002104">
        <property type="entry name" value="Integrase_catalytic"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00589">
        <property type="entry name" value="Phage_integrase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56349">
        <property type="entry name" value="SSF56349"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51898">
        <property type="entry name" value="TYR_RECOMBINASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0233">DNA recombination</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Tyr recombinase" evidence="3">
        <location>
            <begin position="188"/>
            <end position="438"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="446"/>
            <end position="466"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023172"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="PROSITE" id="PS51898"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="ABX35362.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="ABX35618.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="466" mass="52801" checksum="AAE48B6E8387BD0D" modified="2008-01-15" version="1">MFVTVKARVHTDATGAYAELPALLTPAGVLEPLLDYCLYRSHDRSLAWMSKVTRSVRMFLEYLQSNPGERDTYRLFQNFAQRLYTGTFDRATGLDPSGLCWAPRSPQDASHIVTHLTDFFDWLGEMRPEAAQVNPRYAGGAFDRQTDEAAYQYRRSKAFLGHAWAANASPAETGHRVRGQRLPRVEKGEPPAFPEERFEELLAKGFHAAGRQDYRGMLITLLLHGAGFRESEPFHLYISDVFPDPANPSQARVLIHHPSHGGAPADWRDERGKSRKGNRAEYLAQQFGLVPRNELMDRRHAGWKGGTHDAAYYKQAYWFLPEYGKWFLQLWHRYLEQVARIDRGHPFAFINLSREPVGGVYTLNQYNKAHAAACERIGLTVGKALGTTPHGHRHAYGRRLRNADVDKSLIRRFMHHASEESQQVYTQATTHEAIAALETAAQRLRAQHAGPPTVLGRPQPGIELDE</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-05-25" version="71" xmlns="http://uniprot.org/uniprot">
    <accession>A9BU24</accession>
    <name>A9BU24_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Glutathione S-transferase domain</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Daci_3101</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="4" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX35739.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012204940.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_3101"/>
    <dbReference type="EnsemblBacteria" id="ABX35739">
        <property type="protein sequence ID" value="ABX35739"/>
        <property type="gene ID" value="Daci_3101"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_3101"/>
    <dbReference type="eggNOG" id="COG0625">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_011226_6_1_4"/>
    <dbReference type="OMA" id="ESHIYFG"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016740">
        <property type="term" value="F:transferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006749">
        <property type="term" value="P:glutathione metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010987">
        <property type="entry name" value="Glutathione-S-Trfase_C-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036282">
        <property type="entry name" value="Glutathione-S-Trfase_C_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004045">
        <property type="entry name" value="Glutathione_S-Trfase_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004046">
        <property type="entry name" value="GST_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036249">
        <property type="entry name" value="Thioredoxin-like_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00043">
        <property type="entry name" value="GST_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13409">
        <property type="entry name" value="GST_N_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47616">
        <property type="entry name" value="SSF47616"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52833">
        <property type="entry name" value="SSF52833"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50405">
        <property type="entry name" value="GST_CTER"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50404">
        <property type="entry name" value="GST_NTER"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="GST N-terminal" evidence="1">
        <location>
            <begin position="1"/>
            <end position="81"/>
        </location>
    </feature>
    <feature type="domain" description="GST C-terminal" evidence="2">
        <location>
            <begin position="87"/>
            <end position="210"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS50404"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS50405"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ABX35739.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="210" mass="23812" checksum="656801FDF4AB0D90" modified="2008-01-15" version="1">MKLYYLPGACSLAPHIALNELGLDFQLVRVDHKTHQTEDGRDFRALSPFGYVPLLELDDGSLLREGPAVLQYLADLRPASLLVPVQGSLERYRLLEWLAFLNSEIHKGFIPLLYAVAAGKYGVETARPKLEQRYAWVNAQLAGKRYLMGDGFTVADAYLYALTQWGQAPWLESVYKTSIRFDGLEHLAAWYARMRERPAVRQSLQAEGLR</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="79" xmlns="http://uniprot.org/uniprot">
    <accession>A9BU35</accession>
    <name>A9BU35_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="11">TonB-dependent receptor</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="11" type="ordered locus">Daci_3112</name>
    </gene>
    <organism evidence="11 12">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="11 12" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="12">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="12" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="12">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="7">Cell outer membrane</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="1 7">Belongs to the TonB-dependent receptor family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX35750.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012204951.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_3112"/>
    <dbReference type="PRIDE" id="A9BU35"/>
    <dbReference type="EnsemblBacteria" id="ABX35750">
        <property type="protein sequence ID" value="ABX35750"/>
        <property type="gene ID" value="Daci_3112"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_3112"/>
    <dbReference type="eggNOG" id="COG4206">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_407554_0_0_4"/>
    <dbReference type="OMA" id="ATQGTHG"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009279">
        <property type="term" value="C:cell outer membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006811">
        <property type="term" value="P:ion transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="GO" id="GO:0071702">
        <property type="term" value="P:organic substance transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.170.130.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.170.20">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR039426">
        <property type="entry name" value="BtuB-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012910">
        <property type="entry name" value="Plug_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037066">
        <property type="entry name" value="Plug_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000531">
        <property type="entry name" value="TonB-dep_rcpt_b-brl"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036942">
        <property type="entry name" value="TonB_rcpt_b-brl_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010917">
        <property type="entry name" value="TonB_rcpt_CS"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30069">
        <property type="entry name" value="PTHR30069"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07715">
        <property type="entry name" value="Plug"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00593">
        <property type="entry name" value="TonB_dep_Rec"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01156">
        <property type="entry name" value="TONB_DEPENDENT_REC_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="6" id="KW-0998">Cell outer membrane</keyword>
    <keyword evidence="4 7" id="KW-0472">Membrane</keyword>
    <keyword evidence="5 11" id="KW-0675">Receptor</keyword>
    <keyword evidence="12" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 8" id="KW-0732">Signal</keyword>
    <keyword evidence="3 7" id="KW-0798">TonB box</keyword>
    <feature type="signal peptide" evidence="8">
        <location>
            <begin position="1"/>
            <end position="33"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5002735095" evidence="8">
        <location>
            <begin position="34"/>
            <end position="687"/>
        </location>
    </feature>
    <feature type="domain" description="Plug" evidence="10">
        <location>
            <begin position="57"/>
            <end position="167"/>
        </location>
    </feature>
    <feature type="domain" description="TonB_dep_Rec" evidence="9">
        <location>
            <begin position="266"/>
            <end position="684"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00009810"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022729"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023077"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023170"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023237"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="RuleBase" id="RU003357"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="9">
        <source>
            <dbReference type="Pfam" id="PF00593"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="10">
        <source>
            <dbReference type="Pfam" id="PF07715"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="EMBL" id="ABX35750.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="687" mass="74220" checksum="52E8D0B68728CCA2" modified="2008-01-15" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2021-02-10" version="45" xmlns="http://uniprot.org/uniprot">
    <accession>A9BU83</accession>
    <name>A9BU83_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="6">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ordered locus">Daci_3160</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="7" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX35798.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_3160"/>
    <dbReference type="EnsemblBacteria" id="ABX35798">
        <property type="protein sequence ID" value="ABX35798"/>
        <property type="gene ID" value="Daci_3160"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_3160"/>
    <dbReference type="eggNOG" id="COG1279">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_1352787_0_0_4"/>
    <dbReference type="OMA" id="VCASIVW"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006865">
        <property type="term" value="P:amino acid transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001123">
        <property type="entry name" value="LeuE-type"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01810">
        <property type="entry name" value="LysE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="4 5" id="KW-0472">Membrane</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 5" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="3 5" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="6"/>
            <end position="29"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="41"/>
            <end position="60"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="66"/>
            <end position="86"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="145"/>
            <end position="164"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="176"/>
            <end position="199"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="ABX35798.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="202" mass="22337" checksum="C64DCB083C708060" modified="2008-01-15" version="1">MMDENTFLLGVAFGLGIISIPSPKDIFFIKMCVLRRSLFRMAFFAVASDAVLIAVGTLLFGMTSGISAVGMSIRVLAVFYIVYLFFSIDGKGFSEDAVERDRRSGDFLRMGELSLANPYSWIDTVIFLGGMAAVSTYPVSFISGAIAASAIWFLALMLVFGWILSEQMRARVYNYLPLFAKIILPIILCVLVIEIYSILKES</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="60" xmlns="http://uniprot.org/uniprot">
    <accession>A9BUB8</accession>
    <name>A9BUB8_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="6">Conserved repeat domain protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ordered locus">Daci_1176</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="7" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX33821.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012203107.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_1176"/>
    <dbReference type="PRIDE" id="A9BUB8"/>
    <dbReference type="EnsemblBacteria" id="ABX33821">
        <property type="protein sequence ID" value="ABX33821"/>
        <property type="gene ID" value="Daci_1176"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_1176"/>
    <dbReference type="eggNOG" id="COG1361">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_270611_0_0_4"/>
    <dbReference type="OMA" id="DTINTEY"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.40.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001434">
        <property type="entry name" value="DUF11"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013783">
        <property type="entry name" value="Ig-like_fold"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR026442">
        <property type="entry name" value="IPTL_CTERM"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01345">
        <property type="entry name" value="DUF11"/>
        <property type="match status" value="6"/>
    </dbReference>
    <dbReference type="Pfam" id="PF18203">
        <property type="entry name" value="IPTL-CTERM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01451">
        <property type="entry name" value="B_ant_repeat"/>
        <property type="match status" value="4"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR04174">
        <property type="entry name" value="IPTL_CTERM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0472">Membrane</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0732">Signal</keyword>
    <keyword evidence="2" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="2" id="KW-1133">Transmembrane helix</keyword>
    <feature type="signal peptide" evidence="3">
        <location>
            <begin position="1"/>
            <end position="26"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5002732522" evidence="3">
        <location>
            <begin position="27"/>
            <end position="1202"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="1179"/>
            <end position="1196"/>
        </location>
    </feature>
    <feature type="domain" description="DUF11" evidence="4">
        <location>
            <begin position="175"/>
            <end position="307"/>
        </location>
    </feature>
    <feature type="domain" description="DUF11" evidence="4">
        <location>
            <begin position="316"/>
            <end position="446"/>
        </location>
    </feature>
    <feature type="domain" description="DUF11" evidence="4">
        <location>
            <begin position="456"/>
            <end position="577"/>
        </location>
    </feature>
    <feature type="domain" description="DUF11" evidence="4">
        <location>
            <begin position="752"/>
            <end position="878"/>
        </location>
    </feature>
    <feature type="domain" description="DUF11" evidence="4">
        <location>
            <begin position="887"/>
            <end position="1010"/>
        </location>
    </feature>
    <feature type="domain" description="DUF11" evidence="4">
        <location>
            <begin position="1042"/>
            <end position="1160"/>
        </location>
    </feature>
    <feature type="domain" description="IPTL-CTERM" evidence="5">
        <location>
            <begin position="1171"/>
            <end position="1198"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1027"/>
            <end position="1056"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1141"/>
            <end position="1171"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="1027"/>
            <end position="1041"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="1144"/>
            <end position="1171"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="Pfam" id="PF01345"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="Pfam" id="PF18203"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="ABX33821.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="1202" mass="122492" checksum="045F34DEF5DDE4DD" modified="2008-01-15" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="80" xmlns="http://uniprot.org/uniprot">
    <accession>A9BUG1</accession>
    <name>A9BUG1_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Transcriptional regulator, LysR family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Daci_1220</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="4" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the LysR transcriptional regulatory family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX33864.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_1220"/>
    <dbReference type="PRIDE" id="A9BUG1"/>
    <dbReference type="EnsemblBacteria" id="ABX33864">
        <property type="protein sequence ID" value="ABX33864"/>
        <property type="gene ID" value="Daci_1220"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_1220"/>
    <dbReference type="eggNOG" id="COG0583">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_039613_6_0_4"/>
    <dbReference type="OMA" id="WPRGTPI"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003700">
        <property type="term" value="F:DNA-binding transcription factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005119">
        <property type="entry name" value="LysR_subst-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000847">
        <property type="entry name" value="Tscrpt_reg_HTH_LysR"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036390">
        <property type="entry name" value="WH_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00126">
        <property type="entry name" value="HTH_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03466">
        <property type="entry name" value="LysR_substrate"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00039">
        <property type="entry name" value="HTHLYSR"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46785">
        <property type="entry name" value="SSF46785"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50931">
        <property type="entry name" value="HTH_LYSR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HTH lysR-type" evidence="2">
        <location>
            <begin position="28"/>
            <end position="85"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00009437"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS50931"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ABX33864.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="329" mass="35659" checksum="FF33FC99024D985B" modified="2008-01-15" version="1">MDGWQTSGNHSTPGNMHDFDPQRLLSRLRFKHLQLLLALHQGGSLRAAAGLMHLTQPALSKALGEIEAAFGVALFLRNARGLEPTAQGEIAIRGAAMLLAELRHLGSETAQQPAITLLRIGTPPFVAQGYLPGVLADLAAQQPHVRVQLKEERVPLLVQCLLDGQLDALITSYPTELPEAAGQPLRYEKLFDTGFTVIAPPDHPAGHARSNRWEELARQRWILPTRSSMLRRMMEEVFRREGVIAPTPVIESTSPFTNLQLVRAGLGLSAVPDSTLQASPRSLGVRRVHVTPAISMGPVALIYRSAVANPRVALLRATLGLPGPAVEPP</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="59" xmlns="http://uniprot.org/uniprot">
    <accession>A9BUJ2</accession>
    <name>A9BUJ2_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Cobalamin synthesis protein P47K</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ordered locus">Daci_1456</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="5" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the SIMIBI class G3E GTPase family. CobW subfamily.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX34100.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_1456"/>
    <dbReference type="PRIDE" id="A9BUJ2"/>
    <dbReference type="EnsemblBacteria" id="ABX34100">
        <property type="protein sequence ID" value="ABX34100"/>
        <property type="gene ID" value="Daci_1456"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_1456"/>
    <dbReference type="eggNOG" id="COG0523">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_017452_0_2_4"/>
    <dbReference type="OMA" id="MWGVLRY"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.1220.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011629">
        <property type="entry name" value="Cbl_biosynth_CobW-like_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036627">
        <property type="entry name" value="CobW-likC_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003495">
        <property type="entry name" value="CobW/HypB/UreG_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02492">
        <property type="entry name" value="cobW"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07683">
        <property type="entry name" value="CobW_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00833">
        <property type="entry name" value="CobW_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="CobW C-terminal" evidence="3">
        <location>
            <begin position="289"/>
            <end position="383"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="234"/>
            <end position="285"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00008073"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="SMART" id="SM00833"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="ABX34100.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="384" mass="43674" checksum="C982E9E6CCCFA5EF" modified="2008-01-15" version="1">MPLPLAEFSESNPMALIPVTILTGFLGSGKTTLLKRVLSESHGMKIAVIENEFGEENIDTDILRTESKEQILQMSNGCICCTIREDLRETLQLLAAKRRKGLVEFDRIVIETTGLADPGPVAQTFFMDDEIAETYLIDSILTLVDAKHANQQLDDRQEARRQVGFADQLFLSKTDLVSEDEKNALIHRLKHMNPRAPIRAVHFGEVSLNEVFDLRGFNLNAKLDIDPDFLKEDDHDHGHDHGHKHEHDEHCGHDHGHEHDENCGHDHAHDHEHGEHCKHPHHHHHDDDVKSFVYRADRAFDPARLEDFLGAIVNIYGPRMLRYKGVLNMQGTERKVIFQGVHQLMGSDLGPQWAEGEKRQSKMVFIGIDLPQDIFLQGLEQCLV</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="41" xmlns="http://uniprot.org/uniprot">
    <accession>A9BUQ9</accession>
    <name>A9BUQ9_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Daci_1523</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="2" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX34167.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_1523"/>
    <dbReference type="PRIDE" id="A9BUQ9"/>
    <dbReference type="EnsemblBacteria" id="ABX34167">
        <property type="protein sequence ID" value="ABX34167"/>
        <property type="gene ID" value="Daci_1523"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_1523"/>
    <dbReference type="eggNOG" id="ENOG5033GGA">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_1872036_0_0_4"/>
    <dbReference type="OMA" id="CGLKRMG"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ABX34167.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="170" mass="18313" checksum="1A59D99A9C7BA7C1" modified="2008-01-15" version="1">MKAVKAVVWEPAATLCIEDPFRLPHQAIHGLAPAMKTTLSAALICLFLSTPAMARPLDPAPLDASQFNLGLVGFAGEISPAERHLEAMLRRPEANAVLLSVIDDPRRSPVAKLYALCGLKRMGSGGYEAALIKLRGFEGQVSVMLGDQMFQEDIREAADRIENLECSEGG</sequence>
</entry>
<entry dataset="Swiss-Prot" created="2009-03-24" modified="2022-08-03" version="80" xmlns="http://uniprot.org/uniprot">
    <accession>A9BV01</accession>
    <name>PANC_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Pantothenate synthetase</fullName>
            <shortName evidence="1">PS</shortName>
            <ecNumber evidence="1">6.3.2.1</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="1">Pantoate--beta-alanine ligase</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="1">Pantoate-activating enzyme</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="1" type="primary">panC</name>
        <name type="ordered locus">Daci_1821</name>
    </gene>
    <organism>
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference key="1">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain>DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="1">Catalyzes the condensation of pantoate with beta-alanine in an ATP-dependent reaction via a pantoyl-adenylate intermediate.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>(R)-pantoate + ATP + beta-alanine = (R)-pantothenate + AMP + diphosphate + H(+)</text>
            <dbReference type="Rhea" id="RHEA:10912"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:15980"/>
            <dbReference type="ChEBI" id="CHEBI:29032"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:33019"/>
            <dbReference type="ChEBI" id="CHEBI:57966"/>
            <dbReference type="ChEBI" id="CHEBI:456215"/>
            <dbReference type="EC" id="6.3.2.1"/>
        </reaction>
    </comment>
    <comment type="pathway">
        <text evidence="1">Cofactor biosynthesis; (R)-pantothenate biosynthesis; (R)-pantothenate from (R)-pantoate and beta-alanine: step 1/1.</text>
    </comment>
    <comment type="subunit">
        <text evidence="1">Homodimer.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="miscellaneous">
        <text evidence="1">The reaction proceeds by a bi uni uni bi ping pong mechanism.</text>
    </comment>
    <comment type="similarity">
        <text evidence="1">Belongs to the pantothenate synthetase family.</text>
    </comment>
    <dbReference type="EC" id="6.3.2.1" evidence="1"/>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX34463.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012203748.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A9BV01"/>
    <dbReference type="SMR" id="A9BV01"/>
    <dbReference type="STRING" id="398578.Daci_1821"/>
    <dbReference type="PRIDE" id="A9BV01"/>
    <dbReference type="EnsemblBacteria" id="ABX34463">
        <property type="protein sequence ID" value="ABX34463"/>
        <property type="gene ID" value="Daci_1821"/>
    </dbReference>
    <dbReference type="GeneID" id="60686249"/>
    <dbReference type="KEGG" id="dac:Daci_1821"/>
    <dbReference type="eggNOG" id="COG0414">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_047148_0_0_4"/>
    <dbReference type="OMA" id="CNHKLEP"/>
    <dbReference type="UniPathway" id="UPA00028">
        <property type="reaction ID" value="UER00005"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004592">
        <property type="term" value="F:pantoate-beta-alanine ligase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015940">
        <property type="term" value="P:pantothenate biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd00560">
        <property type="entry name" value="PanC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.1300.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.620">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00158">
        <property type="entry name" value="PanC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003721">
        <property type="entry name" value="Pantoate_ligase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR042176">
        <property type="entry name" value="Pantoate_ligase_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014729">
        <property type="entry name" value="Rossmann-like_a/b/a_fold"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR21299:SF1">
        <property type="entry name" value="PTHR21299:SF1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02569">
        <property type="entry name" value="Pantoate_ligase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00018">
        <property type="entry name" value="panC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword id="KW-0067">ATP-binding</keyword>
    <keyword id="KW-0963">Cytoplasm</keyword>
    <keyword id="KW-0436">Ligase</keyword>
    <keyword id="KW-0547">Nucleotide-binding</keyword>
    <keyword id="KW-0566">Pantothenate biosynthesis</keyword>
    <keyword id="KW-1185">Reference proteome</keyword>
    <feature type="chain" id="PRO_1000097058" description="Pantothenate synthetase">
        <location>
            <begin position="1"/>
            <end position="283"/>
        </location>
    </feature>
    <feature type="active site" description="Proton donor" evidence="1">
        <location>
            <position position="33"/>
        </location>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <begin position="26"/>
            <end position="33"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <position position="57"/>
        </location>
        <ligand>
            <name>(R)-pantoate</name>
            <dbReference type="ChEBI" id="CHEBI:15980"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <position position="57"/>
        </location>
        <ligand>
            <name>beta-alanine</name>
            <dbReference type="ChEBI" id="CHEBI:57966"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <begin position="148"/>
            <end position="151"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <position position="154"/>
        </location>
        <ligand>
            <name>(R)-pantoate</name>
            <dbReference type="ChEBI" id="CHEBI:15980"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <position position="177"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <begin position="185"/>
            <end position="188"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000255" key="1">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00158"/>
        </source>
    </evidence>
    <sequence length="283" mass="30862" checksum="B7C991E363DD0E87" modified="2008-01-15" version="1">MQIVHSIADLRAILSSKGRPAFVPTMGNLHDGHLSLVRAARQHGDIAVASIFVNRLQFLPHEDFDSYPRTWEADCAKLEAEGCDLLFAPREADLYPEPQTFKIQPDAQLADILEGHFRPGFFTGVCTVVMKLFSAVFFASGGGTAVFGKKDYQQLMVIRRMVEQFALPVNIVAGDTARADDGLALSSRNGYLSDDERQQAMALSLALKQLADAARAGQAPLAELEAWAMQSLAAQGWEPDYLTVRLRRDLQPPAEGAQLAGAPLVALGAARLGKTRLIDNLEF</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="59" xmlns="http://uniprot.org/uniprot">
    <accession>A9BV22</accession>
    <name>A9BV22_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Patatin</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ordered locus">Daci_1844</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="5" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">Lacks conserved residue(s) required for the propagation of feature annotation.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX34484.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012203769.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_1844"/>
    <dbReference type="PRIDE" id="A9BV22"/>
    <dbReference type="EnsemblBacteria" id="ABX34484">
        <property type="protein sequence ID" value="ABX34484"/>
        <property type="gene ID" value="Daci_1844"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_1844"/>
    <dbReference type="eggNOG" id="COG1752">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_042893_0_0_4"/>
    <dbReference type="OMA" id="QVYRADS"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016787">
        <property type="term" value="F:hydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016042">
        <property type="term" value="P:lipid catabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016035">
        <property type="entry name" value="Acyl_Trfase/lysoPLipase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002641">
        <property type="entry name" value="PNPLA_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01734">
        <property type="entry name" value="Patatin"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52151">
        <property type="entry name" value="SSF52151"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51635">
        <property type="entry name" value="PNPLA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="2" id="KW-0442">Lipid degradation</keyword>
    <keyword evidence="1 2" id="KW-0443">Lipid metabolism</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="PNPLA" evidence="3">
        <location>
            <begin position="19"/>
            <end position="245"/>
        </location>
    </feature>
    <feature type="short sequence motif" description="GXSXG" evidence="2">
        <location>
            <begin position="59"/>
            <end position="63"/>
        </location>
    </feature>
    <feature type="active site" description="Nucleophile" evidence="2">
        <location>
            <position position="61"/>
        </location>
    </feature>
    <feature type="active site" description="Proton acceptor" evidence="2">
        <location>
            <position position="232"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023098"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU01161"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="PROSITE" id="PS51635"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="ABX34484.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="412" mass="44522" checksum="74FC8CDC0A5CEA65" modified="2008-01-15" version="1">MPDAAPSPDSSLPPPSTGLLLSGGGARAAYQAGVLEAIAEIRRACGQQHGPNPFPILVGTSAGAINAAALACGSDHFDRAVRRMSRIWRNLRPEDIYLSDSLSVLRSGARWLTLLSLGWALARWGRMRPRSLLDNQPLGRLLSRGLVPLERLPQLIADGHLRALAVSASSYTTSEHVTFCQAQDQLQPWVRNQRKAAAAQITHAHLLASSAIPFIFPATPLPLDGATEYFGDGSMRQTAPLAPAIHLGAERILVVGAGRRTEPPARPPPEGASYPSLAHIAGHTLSSIFLDALSLDVERAERINQTLALIPPADRERSRLRPLQLLVISPSERIDAIAARHVGQLPLPMRTLLGALGVRQDASDPRGAALASYLLFERSFTRELMALGRRDALARRSDIEQFLGWQRPLVAS</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="74" xmlns="http://uniprot.org/uniprot">
    <accession>A9BVJ1</accession>
    <name>A9BVJ1_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="6">Efflux transporter, RND family, MFP subunit</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ordered locus">Daci_2420</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="7" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX35058.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_2420"/>
    <dbReference type="PRIDE" id="A9BVJ1"/>
    <dbReference type="EnsemblBacteria" id="ABX35058">
        <property type="protein sequence ID" value="ABX35058"/>
        <property type="gene ID" value="Daci_2420"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_2420"/>
    <dbReference type="eggNOG" id="COG0845">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_018816_2_0_4"/>
    <dbReference type="OMA" id="DGHSRLM"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0022857">
        <property type="term" value="F:transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR032317">
        <property type="entry name" value="HlyD_D23"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006143">
        <property type="entry name" value="RND_pump_MFP"/>
    </dbReference>
    <dbReference type="Pfam" id="PF16576">
        <property type="entry name" value="HlyD_D23"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01730">
        <property type="entry name" value="RND_mfp"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="4" id="KW-0472">Membrane</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="4" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="4">
        <location>
            <begin position="30"/>
            <end position="50"/>
        </location>
    </feature>
    <feature type="domain" description="HlyD_D23" evidence="5">
        <location>
            <begin position="77"/>
            <end position="312"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="3">
        <location>
            <begin position="1"/>
            <end position="25"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="3">
        <location>
            <begin position="400"/>
            <end position="421"/>
        </location>
    </feature>
    <feature type="coiled-coil region" evidence="2">
        <location>
            <begin position="123"/>
            <end position="150"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00009477"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="Pfam" id="PF16576"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="ABX35058.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="421" mass="44259" checksum="62241C9EEC5B9FDF" modified="2008-01-15" version="1">MLPSDFARGFMQDTVPPPPSQQRPGKRRPLAWIIALLILIAIGAAVWVHLQGAHSSARRPQAQSVGVATAARGDMPEMLSALGTVTPESTVTVLPQLSGYLTEVGYREGEMVSKGQFLAQIDARQYEITRQQAEAQLAKDQAALAQGQADLQRYAQLNERKSIAPQTYADQQFLVQQQQAAIKADQAAIAQARLNISLCHITAPVAGRVGLRLVDPGNYVTASSQPGIAVITSIKPTTVEFNVPQASLDRVLQRFHSGEPLAVVALSSDNGRQVASGTLYAIGNQMATGTGTVTLRARFANDDEALFPNEFVNVRLHVDTLKDVVLVPTAAIQTGAPGSFVFLVNADRNAVTVRKVATGPADGSHTVVTQGLVAGDTVVVDGVDRLSDGARVALQGAAPQAAKAADTVGTPAPAPAPAPAR</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="42" xmlns="http://uniprot.org/uniprot">
    <accession>A9BVX0</accession>
    <name>A9BVX0_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_2845</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX35483.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_2845"/>
    <dbReference type="PRIDE" id="A9BVX0"/>
    <dbReference type="EnsemblBacteria" id="ABX35483">
        <property type="protein sequence ID" value="ABX35483"/>
        <property type="gene ID" value="Daci_2845"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_2845"/>
    <dbReference type="eggNOG" id="ENOG5032SK4">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_092740_0_0_4"/>
    <dbReference type="OMA" id="TTMIGKN"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="122"/>
            <end position="169"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="220"/>
            <end position="262"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="223"/>
            <end position="256"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX35483.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="262" mass="25366" checksum="4765DB261B2C9DE7" modified="2008-01-15" version="1">MFCGLAFPASPSLFYNASRSPIGHRPSAGWPTYNSRLHAGASARRCLESPPPSPCDTQGRRPARIRAACGAPTGAGPPAPTVYMTTMIGKNSVKTSFRATASVIALAIASLTVPTLAQAKRMGSGGKSVRPASIGKAPAQPAAPAAPTASKAATPASPAAPATPATPAAPAAPAAAAAPAATPATAGAAGPGMMGTLGAAAVGAVAGSMAGNALAGAMTPEKDAAAKEAEAKAKAAETEAAELQRKADEAKAKAEAARAAAK</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="80" xmlns="http://uniprot.org/uniprot">
    <accession>A9BW04</accession>
    <name>A9BW04_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="9">ABC transporter related</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="9" type="ordered locus">Daci_3182</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="9 10" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="10" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="6">Lacks conserved residue(s) required for the propagation of feature annotation.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX35820.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012205020.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_3182"/>
    <dbReference type="PRIDE" id="A9BW04"/>
    <dbReference type="EnsemblBacteria" id="ABX35820">
        <property type="protein sequence ID" value="ABX35820"/>
        <property type="gene ID" value="Daci_3182"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_3182"/>
    <dbReference type="eggNOG" id="COG1129">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_000604_92_2_4"/>
    <dbReference type="OMA" id="LPGGRMH"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003593">
        <property type="entry name" value="AAA+_ATPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003439">
        <property type="entry name" value="ABC_transporter-like_ATP-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017871">
        <property type="entry name" value="ABC_transporter-like_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00005">
        <property type="entry name" value="ABC_tran"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SMART" id="SM00382">
        <property type="entry name" value="AAA"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00211">
        <property type="entry name" value="ABC_TRANSPORTER_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50893">
        <property type="entry name" value="ABC_TRANSPORTER_2"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3 6" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="1" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="5" id="KW-0472">Membrane</keyword>
    <keyword evidence="2 6" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4" id="KW-1278">Translocase</keyword>
    <feature type="domain" description="ABC transporter" evidence="8">
        <location>
            <begin position="24"/>
            <end position="259"/>
        </location>
    </feature>
    <feature type="domain" description="ABC transporter" evidence="8">
        <location>
            <begin position="258"/>
            <end position="516"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="7">
        <location>
            <begin position="1"/>
            <end position="20"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Pro residues" evidence="7">
        <location>
            <begin position="1"/>
            <end position="17"/>
        </location>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <begin position="56"/>
            <end position="63"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022967"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00434"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="PROSITE" id="PS50893"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="ABX35820.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="518" mass="55641" checksum="91E196D49FA9C7A4" modified="2008-01-15" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="41" xmlns="http://uniprot.org/uniprot">
    <accession>A9BWL1</accession>
    <name>A9BWL1_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_3907</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX36538.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="PRIDE" id="A9BWL1"/>
    <dbReference type="EnsemblBacteria" id="ABX36538">
        <property type="protein sequence ID" value="ABX36538"/>
        <property type="gene ID" value="Daci_3907"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_3907"/>
    <dbReference type="HOGENOM" id="CLU_2381426_0_0_4"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="20"/>
            <end position="41"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX36538.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="94" mass="10765" checksum="5729C24B051653E7" modified="2008-01-15" version="1">MAVIANAIPFRKQTLKKVECILLSSTCVNIFFAAVGFFAILPLQYYAMPQLGYTHCNILEGHPNKDSMDWVKNSEWCVRGKSREWVKEQARLAQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="61" xmlns="http://uniprot.org/uniprot">
    <accession>A9BWT9</accession>
    <name>A9BWT9_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Glutaredoxin</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ordered locus">Daci_3985</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="5" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX36616.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_3985"/>
    <dbReference type="PRIDE" id="A9BWT9"/>
    <dbReference type="EnsemblBacteria" id="ABX36616">
        <property type="protein sequence ID" value="ABX36616"/>
        <property type="gene ID" value="Daci_3985"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_3985"/>
    <dbReference type="eggNOG" id="COG0695">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_111602_0_0_4"/>
    <dbReference type="OMA" id="WTQYLDA"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0097573">
        <property type="term" value="F:glutathione oxidoreductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025392">
        <property type="entry name" value="DUF4124"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002109">
        <property type="entry name" value="Glutaredoxin"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036249">
        <property type="entry name" value="Thioredoxin-like_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13511">
        <property type="entry name" value="DUF4124"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00462">
        <property type="entry name" value="Glutaredoxin"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52833">
        <property type="entry name" value="SSF52833"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="DUF4124" evidence="3">
        <location>
            <begin position="55"/>
            <end position="100"/>
        </location>
    </feature>
    <feature type="domain" description="Glutaredoxin" evidence="2">
        <location>
            <begin position="124"/>
            <end position="178"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="13"/>
            <end position="39"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="79"/>
            <end position="103"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="209"/>
            <end position="266"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF00462"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF13511"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="ABX36616.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="266" mass="27375" checksum="69B7E9F06EB465D8" modified="2008-01-15" version="1">MARYACRHSCAGIHPTSGGPRHETLLPKPRSSMQSSPSLGRGALRHLMPCLALVCLAAALPASAQQVYRIVGPDGKVTFSDRPAQSAQQQAAPAAPAAPSVAGTTDSNANLPYALRQIAGRFPVTLYTSSDCAPCDSARQLLQSRGIPYAERLVQTEADAAALQKLSGQNSLPFATVGKQFLSGFSSSEWTQYLDAAGYPATSQLPAQYKRPSAQPLTTPAPAASAAASAPAAAPAAAEAPGSRRTPMPAPAPGARTNDNPAGLSF</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="63" xmlns="http://uniprot.org/uniprot">
    <accession>A9BWV8</accession>
    <name>A9BWV8_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="7">Inner-membrane translocator</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ordered locus">Daci_4312</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="8" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX36943.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012206115.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_4312"/>
    <dbReference type="PRIDE" id="A9BWV8"/>
    <dbReference type="EnsemblBacteria" id="ABX36943">
        <property type="protein sequence ID" value="ABX36943"/>
        <property type="gene ID" value="Daci_4312"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_4312"/>
    <dbReference type="eggNOG" id="COG4120">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_067296_0_0_4"/>
    <dbReference type="OMA" id="RHILIHA"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0022857">
        <property type="term" value="F:transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001851">
        <property type="entry name" value="ABC_transp_permease"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02653">
        <property type="entry name" value="BPD_transp_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="5 6" id="KW-0472">Membrane</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 6" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="4 6" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="6"/>
            <end position="30"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="59"/>
            <end position="81"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="88"/>
            <end position="111"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="131"/>
            <end position="154"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="175"/>
            <end position="203"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="209"/>
            <end position="230"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="237"/>
            <end position="257"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="269"/>
            <end position="286"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="ABX36943.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="294" mass="30914" checksum="1A1F2E856AEF3D7A" modified="2008-01-15" version="1">MSLFSLLGAVEIGLIFSLVALGVFISFRLLRFPDLTVDGSFPLGGAVCAILISTGTNPWLATLAGTAAGAVAGLITGWLNVRLKIMDLLASILMMIGLYSVNLRIMGGPNVPLINETTLFTLLQPDSVADYVMRPVILFVIVVIAKLGLDWFFATERGLAIRATGSNARMARSQGVNTGAMILLGMAISNGLVGLAGALFVQTQGGSDISMGIGTIVIGLAAVIVGESILPSRRIVWATLAVVVGAIVYRFFIAAALNSDFIGLKAQDLNLVTALLVTVALVIPQLKRKFAQRK</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="41" xmlns="http://uniprot.org/uniprot">
    <accession>A9BWY7</accession>
    <name>A9BWY7_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Bifunctional endo-1,4-beta-xylanase xylA</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_4341</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX36972.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012206144.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_4341"/>
    <dbReference type="PRIDE" id="A9BWY7"/>
    <dbReference type="EnsemblBacteria" id="ABX36972">
        <property type="protein sequence ID" value="ABX36972"/>
        <property type="gene ID" value="Daci_4341"/>
    </dbReference>
    <dbReference type="GeneID" id="60688612"/>
    <dbReference type="KEGG" id="dac:Daci_4341"/>
    <dbReference type="HOGENOM" id="CLU_2768986_0_0_4"/>
    <dbReference type="OMA" id="INRIMVM"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016798">
        <property type="term" value="F:hydrolase activity, acting on glycosyl bonds"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0045493">
        <property type="term" value="P:xylan catabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0119">Carbohydrate metabolism</keyword>
    <keyword evidence="2" id="KW-0326">Glycosidase</keyword>
    <keyword evidence="2" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="2" id="KW-0624">Polysaccharide degradation</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0858">Xylan degradation</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="70"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX36972.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="70" mass="8015" checksum="83B38C0B396E0ECF" modified="2008-01-15" version="1">MTQQTNNPQGNTASNQQNDKNKQQQQQNNPGQQQQSNPNNPNNPNQQQQQSNPQRNQPGEQQKQGSHQQR</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="44" xmlns="http://uniprot.org/uniprot">
    <accession>A9BX20</accession>
    <name>A9BX20_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_4374</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX37005.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="PRIDE" id="A9BX20"/>
    <dbReference type="EnsemblBacteria" id="ABX37005">
        <property type="protein sequence ID" value="ABX37005"/>
        <property type="gene ID" value="Daci_4374"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_4374"/>
    <dbReference type="eggNOG" id="ENOG5032U6K">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_119432_0_0_4"/>
    <dbReference type="OMA" id="HECVCEN"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="42"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="1"/>
            <end position="33"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX37005.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="197" mass="21219" checksum="0E3913CD9405F2CB" modified="2008-01-15" version="1">MVAGCNLQESASTSARPLGDDSPCHQAKSGTSGKLGVRSAERPNLKNGTVSMALTKKGEFWYGTTSGDTQAELRSYSIANLHEAVRFASSKCDCGCRTFALQTDEEAGVAIRTCTDCGQEHLMGDSAEYVEEATPEAHECVCENETFELMSGVSVYEGTHDVRWYYIACHCVECNLVGVFADWKCEAGDAAAFLAKV</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="62" xmlns="http://uniprot.org/uniprot">
    <accession>A9BX47</accession>
    <name>A9BX47_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="8">Major facilitator superfamily MFS_1</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="8" type="ordered locus">Daci_4401</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="9" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX37032.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_4401"/>
    <dbReference type="PRIDE" id="A9BX47"/>
    <dbReference type="EnsemblBacteria" id="ABX37032">
        <property type="protein sequence ID" value="ABX37032"/>
        <property type="gene ID" value="Daci_4401"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_4401"/>
    <dbReference type="eggNOG" id="COG2271">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_001265_58_1_4"/>
    <dbReference type="OMA" id="FGTVFLH"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0022857">
        <property type="term" value="F:transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.1250.20">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011701">
        <property type="entry name" value="MFS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020846">
        <property type="entry name" value="MFS_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036259">
        <property type="entry name" value="MFS_trans_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07690">
        <property type="entry name" value="MFS_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF103473">
        <property type="entry name" value="SSF103473"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50850">
        <property type="entry name" value="MFS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4 6" id="KW-0472">Membrane</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 6" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="3 6" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="35"/>
            <end position="59"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="71"/>
            <end position="89"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="101"/>
            <end position="120"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="132"/>
            <end position="152"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="173"/>
            <end position="190"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="196"/>
            <end position="217"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="251"/>
            <end position="273"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="279"/>
            <end position="302"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="314"/>
            <end position="337"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="343"/>
            <end position="368"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="380"/>
            <end position="402"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="408"/>
            <end position="430"/>
        </location>
    </feature>
    <feature type="domain" description="MFS" evidence="7">
        <location>
            <begin position="35"/>
            <end position="445"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="5">
        <location>
            <begin position="1"/>
            <end position="24"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="PROSITE" id="PS50850"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="ABX37032.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="461" mass="46906" checksum="D5B6129013E9EA9B" modified="2008-01-15" version="1">MRPNILTPMTSSSPAPGADPGPLPLPAPPRHRWKVLAAGVIANAAFSVVFSGIPMTAILMRSGYQLDTRTLGLALGLMGLGIALSELPWGLLTDRWGDRPVLLLGLCGTAVALAAMALWASPSPAHIPPFGLLAGGLVLVGLLGGSVNGASGRAVMGWFAEGERGLAMSIRQTAVPLGGAIGAPLLTGLATHAGFAAVYGVLAALCLGAAAFAPLWIQEPPQSPLRGKAAAPDRAATPTPSPLSDLQAWRMAAGIGILCAPQFAVLSFGTVFLHDHAQLGLGAAAAVMSVVQLASMALRIWSGRWTDRHRNRPAFLRACCQLTLALFAGLAVLSWAGHPAGSAAMGVALMVMLGICGICVSAWHGVAYTQLAGLAGAARAGTALGMANTSVFAVCFLVPLAIPHLLSAQGWGLVWACAAACAGWAMQLFARAGAIGNAKAAKTPQLHENVGCLTPPTSPRS</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="90" xmlns="http://uniprot.org/uniprot">
    <accession>A9BX73</accession>
    <name>A9BX73_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="5 6">Imidazoleglycerol-phosphate dehydratase</fullName>
            <shortName evidence="5">IGPD</shortName>
            <ecNumber evidence="5 6">4.2.1.19</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="5" type="primary">hisB</name>
        <name evidence="7" type="ordered locus">Daci_5520</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="8" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="5 6">
            <text>D-erythro-1-(imidazol-4-yl)glycerol 3-phosphate = 3-(imidazol-4-yl)-2-oxopropyl phosphate + H2O</text>
            <dbReference type="Rhea" id="RHEA:11040"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:57766"/>
            <dbReference type="ChEBI" id="CHEBI:58278"/>
            <dbReference type="EC" id="4.2.1.19"/>
        </reaction>
    </comment>
    <comment type="pathway">
        <text evidence="1 5 6">Amino-acid biosynthesis; L-histidine biosynthesis; L-histidine from 5-phospho-alpha-D-ribose 1-diphosphate: step 6/9.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="5 6">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="5 6">Belongs to the imidazoleglycerol-phosphate dehydratase family.</text>
    </comment>
    <dbReference type="EC" id="4.2.1.19" evidence="5 6"/>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX38149.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012207318.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_5520"/>
    <dbReference type="PRIDE" id="A9BX73"/>
    <dbReference type="EnsemblBacteria" id="ABX38149">
        <property type="protein sequence ID" value="ABX38149"/>
        <property type="gene ID" value="Daci_5520"/>
    </dbReference>
    <dbReference type="GeneID" id="60689873"/>
    <dbReference type="KEGG" id="dac:Daci_5520"/>
    <dbReference type="eggNOG" id="COG0131">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_044308_3_0_4"/>
    <dbReference type="OMA" id="ARHGLFD"/>
    <dbReference type="UniPathway" id="UPA00031">
        <property type="reaction ID" value="UER00011"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004424">
        <property type="term" value="F:imidazoleglycerol-phosphate dehydratase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000105">
        <property type="term" value="P:histidine biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd07914">
        <property type="entry name" value="IGPD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.230.40">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00076">
        <property type="entry name" value="HisB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038494">
        <property type="entry name" value="IGPD_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000807">
        <property type="entry name" value="ImidazoleglycerolP_deHydtase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020565">
        <property type="entry name" value="ImidazoleglycerP_deHydtase_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020568">
        <property type="entry name" value="Ribosomal_S5_D2-typ_fold"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR23133">
        <property type="entry name" value="PTHR23133"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00475">
        <property type="entry name" value="IGPD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54211">
        <property type="entry name" value="SSF54211"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00954">
        <property type="entry name" value="IGP_DEHYDRATASE_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00955">
        <property type="entry name" value="IGP_DEHYDRATASE_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2 5" id="KW-0028">Amino-acid biosynthesis</keyword>
    <keyword evidence="5" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="3 5 6" id="KW-0368">Histidine biosynthesis</keyword>
    <keyword evidence="4 5 6" id="KW-0456">Lyase</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00005047"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022605"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023102"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023239"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00076"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="RuleBase" id="RU000599"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="ABX38149.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="201" mass="21930" checksum="207CACC199F6584F" modified="2008-01-15" version="1">MSNAAPARTAEVQRNTAETRIKVAINLDGTGKASLRSGIGFLDHMLDQIARHGLIDLDIDCEGDLHIDGHHTVEDIGITLGQAFAKAVGDKKGIRRYGHAYVPLDEALSRVVIDFSGRPGLHMDVKFTAGSIGQLDTQLVYEFFQGFVNHAGVTMHIDNLKGFNAHHQCETIFKAFARALRFALEHDERMAGVIPSTKGAL</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="53" xmlns="http://uniprot.org/uniprot">
    <accession>A9BXC9</accession>
    <name>A9BXC9_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">Big-1 domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="4" type="ordered locus">Daci_5576</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
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            <authorList>
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                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
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            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
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        </source>
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        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
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        <property type="protein sequence ID" value="ABX38205.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
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            <begin position="1"/>
            <end position="18"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5002732633" description="Big-1 domain-containing protein" evidence="2">
        <location>
            <begin position="19"/>
            <end position="535"/>
        </location>
    </feature>
    <feature type="domain" description="Big-1" evidence="3">
        <location>
            <begin position="54"/>
            <end position="101"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00010116"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="SignalP"/>
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    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF02369"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="ABX38205.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="535" mass="54370" checksum="921F07C69B7D5AA0" modified="2008-01-15" version="1"> </sequence>
</entry>
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    <organism evidence="2 3">
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    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
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                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
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            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
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    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
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        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
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        <property type="nucleotide sequence ID" value="NC_010002.1"/>
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    <dbReference type="STRING" id="398578.Daci_5653"/>
    <dbReference type="PRIDE" id="A9BXK5"/>
    <dbReference type="EnsemblBacteria" id="ABX38281">
        <property type="protein sequence ID" value="ABX38281"/>
        <property type="gene ID" value="Daci_5653"/>
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    <dbReference type="eggNOG" id="COG0841">
        <property type="taxonomic scope" value="Bacteria"/>
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    <dbReference type="OMA" id="MRTVNTD"/>
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        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
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        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
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        <property type="term" value="F:transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
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    </dbReference>
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        <property type="entry name" value="AcrB_DN_DC_subdom"/>
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        <property type="entry name" value="Acrflvin-R"/>
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        <property type="match status" value="1"/>
    </dbReference>
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        <property type="entry name" value="ACR_tran"/>
        <property type="match status" value="1"/>
    </dbReference>
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        <property type="entry name" value="ACRIFLAVINRP"/>
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    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
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    <feature type="transmembrane region" description="Helical" evidence="1">
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            <end position="489"/>
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    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
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    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
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            <end position="879"/>
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    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="886"/>
            <end position="908"/>
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    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="914"/>
            <end position="935"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="963"/>
            <end position="982"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="988"/>
            <end position="1012"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX38281.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="1022" mass="111312" checksum="884E1D199F37F376" modified="2008-01-15" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="60" xmlns="http://uniprot.org/uniprot">
    <accession>A9BY28</accession>
    <name>A9BY28_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Glycosyl transferase, family 2</fullName>
        </submittedName>
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    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
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            <taxon>Bacteria</taxon>
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    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
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                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
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            <dbReference type="PubMed" id="15240283"/>
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        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
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            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
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    </dbReference>
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    </dbReference>
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        <property type="entry name" value="SSF53448"/>
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    </dbReference>
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    <keyword evidence="1 2" id="KW-0808">Transferase</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX33963.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="257" mass="28781" checksum="7E453C616FC05E34" modified="2008-01-15" version="1">MGSSLVVSVVSHGHGAHIQRLLECLASARLAPMSRVVLTLNIPEPEPLAPATGWPFVLEIRRNAQPLGFGCNHNRALANAREAFVCVINPDVYWGAQEEPLQELLALAARPGLALAYPPQIGEDGTLQDFERELPSFWNLLRRKLHGRVEQRVEWVNAACLVLGRDSWMRLRGFDEGFYMYCEDVDLCLRLRVLGGELRRGELPVVHAGQRASRRSLRHGAWHVASLLRLWSRPAYRKARALPQAAPSLRSLHGELS</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="68" xmlns="http://uniprot.org/uniprot">
    <accession>A9BY77</accession>
    <name>A9BY77_DELAS</name>
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        <submittedName>
            <fullName evidence="3">Response regulator receiver protein</fullName>
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    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
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                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
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            <dbReference type="PubMed" id="15240283"/>
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        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="4" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX34216.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012203501.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_1572"/>
    <dbReference type="PRIDE" id="A9BY77"/>
    <dbReference type="EnsemblBacteria" id="ABX34216">
        <property type="protein sequence ID" value="ABX34216"/>
        <property type="gene ID" value="Daci_1572"/>
    </dbReference>
    <dbReference type="GeneID" id="60686109"/>
    <dbReference type="KEGG" id="dac:Daci_1572"/>
    <dbReference type="eggNOG" id="COG0745">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_000445_69_17_4"/>
    <dbReference type="OMA" id="IIFIDIM"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000160">
        <property type="term" value="P:phosphorelay signal transduction system"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011006">
        <property type="entry name" value="CheY-like_superfamily"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001789">
        <property type="entry name" value="Sig_transdc_resp-reg_receiver"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00072">
        <property type="entry name" value="Response_reg"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00448">
        <property type="entry name" value="REC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52172">
        <property type="entry name" value="SSF52172"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50110">
        <property type="entry name" value="RESPONSE_REGULATORY"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0597">Phosphoprotein</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Response regulatory" evidence="2">
        <location>
            <begin position="9"/>
            <end position="125"/>
        </location>
    </feature>
    <feature type="modified residue" description="4-aspartylphosphate" evidence="1">
        <location>
            <position position="58"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00169"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS50110"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ABX34216.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="132" mass="14617" checksum="71EB27305C5FEBD7" modified="2008-01-15" version="1">MTTSGAPLRVLVVDDSNTIRRSAEIFLKQGGHEVLLADDGFDALSKVNDYQPQLIFCDILMPKLDGYQTCAIIKRNARFSDTPVVMLSSKDGVFDKARGRMVGCQDYLTKPFTKDQLLQAVEQFGKQTIGAL</sequence>
</entry>
<entry dataset="Swiss-Prot" created="2009-03-24" modified="2022-08-03" version="74" xmlns="http://uniprot.org/uniprot">
    <accession>A9BY86</accession>
    <name>PYRB_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Aspartate carbamoyltransferase</fullName>
            <ecNumber evidence="1">2.1.3.2</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="1">Aspartate transcarbamylase</fullName>
            <shortName evidence="1">ATCase</shortName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="1" type="primary">pyrB</name>
        <name type="ordered locus">Daci_1581</name>
    </gene>
    <organism>
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference key="1">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain>DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>carbamoyl phosphate + L-aspartate = H(+) + N-carbamoyl-L-aspartate + phosphate</text>
            <dbReference type="Rhea" id="RHEA:20013"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:29991"/>
            <dbReference type="ChEBI" id="CHEBI:32814"/>
            <dbReference type="ChEBI" id="CHEBI:43474"/>
            <dbReference type="ChEBI" id="CHEBI:58228"/>
            <dbReference type="EC" id="2.1.3.2"/>
        </reaction>
    </comment>
    <comment type="pathway">
        <text evidence="1">Pyrimidine metabolism; UMP biosynthesis via de novo pathway; (S)-dihydroorotate from bicarbonate: step 2/3.</text>
    </comment>
    <comment type="similarity">
        <text evidence="1">Belongs to the aspartate/ornithine carbamoyltransferase superfamily. ATCase family.</text>
    </comment>
    <dbReference type="EC" id="2.1.3.2" evidence="1"/>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX34225.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012203510.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A9BY86"/>
    <dbReference type="SMR" id="A9BY86"/>
    <dbReference type="STRING" id="398578.Daci_1581"/>
    <dbReference type="PRIDE" id="A9BY86"/>
    <dbReference type="EnsemblBacteria" id="ABX34225">
        <property type="protein sequence ID" value="ABX34225"/>
        <property type="gene ID" value="Daci_1581"/>
    </dbReference>
    <dbReference type="GeneID" id="60686118"/>
    <dbReference type="KEGG" id="dac:Daci_1581"/>
    <dbReference type="eggNOG" id="COG0540">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_043846_2_0_4"/>
    <dbReference type="OMA" id="FPTEREY"/>
    <dbReference type="UniPathway" id="UPA00070">
        <property type="reaction ID" value="UER00116"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016597">
        <property type="term" value="F:amino acid binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004070">
        <property type="term" value="F:aspartate carbamoyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006207">
        <property type="term" value="P:'de novo' pyrimidine nucleobase biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0044205">
        <property type="term" value="P:'de novo' UMP biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniPathway"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006520">
        <property type="term" value="P:cellular amino acid metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.1370">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00001">
        <property type="entry name" value="Asp_carb_tr"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006132">
        <property type="entry name" value="Asp/Orn_carbamoyltranf_P-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006130">
        <property type="entry name" value="Asp/Orn_carbamoylTrfase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036901">
        <property type="entry name" value="Asp/Orn_carbamoylTrfase_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002082">
        <property type="entry name" value="Asp_carbamoyltransf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006131">
        <property type="entry name" value="Asp_carbamoyltransf_Asp/Orn-bd"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11405:SF16">
        <property type="entry name" value="PTHR11405:SF16"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00185">
        <property type="entry name" value="OTCace"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02729">
        <property type="entry name" value="OTCace_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00100">
        <property type="entry name" value="AOTCASE"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53671">
        <property type="entry name" value="SSF53671"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00670">
        <property type="entry name" value="asp_carb_tr"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00097">
        <property type="entry name" value="CARBAMOYLTRANSFERASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword id="KW-0665">Pyrimidine biosynthesis</keyword>
    <keyword id="KW-1185">Reference proteome</keyword>
    <keyword id="KW-0808">Transferase</keyword>
    <feature type="chain" id="PRO_1000088758" description="Aspartate carbamoyltransferase">
        <location>
            <begin position="1"/>
            <end position="320"/>
        </location>
    </feature>
    <evidence type="ECO:0000255" key="1">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00001"/>
        </source>
    </evidence>
    <sequence length="320" mass="35009" checksum="FE17BBE6668E35A1" modified="2008-01-15" version="1">MLYKRNPQLNKNGELIHLLSTEGLSKDILTHILDTAANFVSVNDREVKKVPLLRGKSVFNLFFENSTRTRTTFEIAAKRLSADVFNLDIARSSASKGESLLDTIANLSAMAADIFVVRHSESGAPYLIAQHVAPHVHVVNAGDGRHAHPTQGLLDMYTIRHYKKDFANLRVAIVGDVLHSRVARSDIHALTTLGAAEVRVVGPRTLVPPDLAQMGVRVFHTLEEGIRDCDVIIMLRLQNERMSGALLPSSQEYFKSFGLTAEKLRLAKPDAIVMHPGPINRGVEIDSEVVDGPQAVILSQVSFGIAVRMAVMSIVAGNEA</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="76" xmlns="http://uniprot.org/uniprot">
    <accession>A9BY94</accession>
    <name>A9BY94_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="6">Binding-protein-dependent transport systems inner membrane component</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ordered locus">Daci_1589</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="7" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="4">Cell membrane</location>
            <topology evidence="4">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="4">Belongs to the binding-protein-dependent transport system permease family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX34233.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012203518.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_1589"/>
    <dbReference type="PRIDE" id="A9BY94"/>
    <dbReference type="EnsemblBacteria" id="ABX34233">
        <property type="protein sequence ID" value="ABX34233"/>
        <property type="gene ID" value="Daci_1589"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_1589"/>
    <dbReference type="eggNOG" id="COG1178">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_021838_0_2_4"/>
    <dbReference type="OMA" id="QAFWRVA"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0055085">
        <property type="term" value="P:transmembrane transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd06261">
        <property type="entry name" value="TM_PBP2"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.3720.10">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000515">
        <property type="entry name" value="MetI-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035906">
        <property type="entry name" value="MetI-like_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00528">
        <property type="entry name" value="BPD_transp_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF161098">
        <property type="entry name" value="SSF161098"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50928">
        <property type="entry name" value="ABC_TM1"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3 4" id="KW-0472">Membrane</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1 4" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="2 4" id="KW-1133">Transmembrane helix</keyword>
    <keyword evidence="4" id="KW-0813">Transport</keyword>
    <feature type="transmembrane region" description="Helical" evidence="4">
        <location>
            <begin position="61"/>
            <end position="83"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="4">
        <location>
            <begin position="95"/>
            <end position="113"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="4">
        <location>
            <begin position="145"/>
            <end position="166"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="4">
        <location>
            <begin position="187"/>
            <end position="209"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="4">
        <location>
            <begin position="241"/>
            <end position="260"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="4">
        <location>
            <begin position="294"/>
            <end position="314"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="4">
        <location>
            <begin position="334"/>
            <end position="360"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="4">
        <location>
            <begin position="372"/>
            <end position="393"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="4">
        <location>
            <begin position="405"/>
            <end position="424"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="4">
        <location>
            <begin position="517"/>
            <end position="535"/>
        </location>
    </feature>
    <feature type="domain" description="ABC transmembrane type-1" evidence="5">
        <location>
            <begin position="57"/>
            <end position="262"/>
        </location>
    </feature>
    <feature type="domain" description="ABC transmembrane type-1" evidence="5">
        <location>
            <begin position="335"/>
            <end position="535"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="RuleBase" id="RU363032"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="PROSITE" id="PS50928"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="ABX34233.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="548" mass="59575" checksum="CB1952968BF41D66" modified="2008-01-15" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="84" xmlns="http://uniprot.org/uniprot">
    <accession>A9BY99</accession>
    <name>A9BY99_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="6">Periplasmic serine endoprotease DegP-like</fullName>
            <ecNumber evidence="6">3.4.21.107</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="9" type="ordered locus">Daci_1594</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="9 10" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="10" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="6">
            <text>Acts on substrates that are at least partially unfolded. The cleavage site P1 residue is normally between a pair of hydrophobic residues, such as Val-|-Val.</text>
            <dbReference type="EC" id="3.4.21.107"/>
        </reaction>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="6">Periplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="6">Belongs to the peptidase S1C family.</text>
    </comment>
    <dbReference type="EC" id="3.4.21.107" evidence="6"/>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX34238.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012203523.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_1594"/>
    <dbReference type="PRIDE" id="A9BY99"/>
    <dbReference type="EnsemblBacteria" id="ABX34238">
        <property type="protein sequence ID" value="ABX34238"/>
        <property type="gene ID" value="Daci_1594"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_1594"/>
    <dbReference type="eggNOG" id="COG0265">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_020120_1_0_4"/>
    <dbReference type="OMA" id="GPLFNQR"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0042597">
        <property type="term" value="C:periplasmic space"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016491">
        <property type="term" value="F:oxidoreductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004252">
        <property type="term" value="F:serine-type endopeptidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006508">
        <property type="term" value="P:proteolysis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.30.42.10">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001478">
        <property type="entry name" value="PDZ"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041489">
        <property type="entry name" value="PDZ_6"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036034">
        <property type="entry name" value="PDZ_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011782">
        <property type="entry name" value="Pept_S1C_Do"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009003">
        <property type="entry name" value="Peptidase_S1_PA"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001940">
        <property type="entry name" value="Peptidase_S1C"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13180">
        <property type="entry name" value="PDZ_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF17820">
        <property type="entry name" value="PDZ_6"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00834">
        <property type="entry name" value="PROTEASES2C"/>
    </dbReference>
    <dbReference type="SMART" id="SM00228">
        <property type="entry name" value="PDZ"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50156">
        <property type="entry name" value="SSF50156"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50494">
        <property type="entry name" value="SSF50494"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR02037">
        <property type="entry name" value="degP_htrA_DO"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50106">
        <property type="entry name" value="PDZ"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4 6" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="9" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="1 6 9" id="KW-0645">Protease</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0677">Repeat</keyword>
    <keyword evidence="6" id="KW-0720">Serine protease</keyword>
    <keyword evidence="2" id="KW-0732">Signal</keyword>
    <keyword evidence="6" id="KW-0346">Stress response</keyword>
    <feature type="domain" description="PDZ" evidence="8">
        <location>
            <begin position="314"/>
            <end position="405"/>
        </location>
    </feature>
    <feature type="domain" description="PDZ" evidence="8">
        <location>
            <begin position="423"/>
            <end position="510"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="7">
        <location>
            <begin position="95"/>
            <end position="114"/>
        </location>
    </feature>
    <feature type="active site" description="Charge relay system" evidence="5">
        <location>
            <position position="167"/>
        </location>
    </feature>
    <feature type="active site" description="Charge relay system" evidence="5">
        <location>
            <position position="197"/>
        </location>
    </feature>
    <feature type="active site" description="Charge relay system" evidence="5">
        <location>
            <position position="270"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022670"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022729"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022737"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="PIRSR" id="PIRSR611782-1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="RuleBase" id="RU364067"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="PROSITE" id="PS50106"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="ABX34238.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="520" mass="53091" checksum="EE5FFA18AF52A947" modified="2008-01-15" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="49" xmlns="http://uniprot.org/uniprot">
    <accession>A9BYD7</accession>
    <name>A9BYD7_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Phage portal protein, HK97 family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Daci_1632</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="2" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX34276.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012203561.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_1632"/>
    <dbReference type="PRIDE" id="A9BYD7"/>
    <dbReference type="EnsemblBacteria" id="ABX34276">
        <property type="protein sequence ID" value="ABX34276"/>
        <property type="gene ID" value="Daci_1632"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_1632"/>
    <dbReference type="eggNOG" id="COG4695">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_033789_0_0_4"/>
    <dbReference type="OMA" id="YVHNSHI"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006944">
        <property type="entry name" value="Phage/GTA_portal"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006427">
        <property type="entry name" value="Portal_HK97"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04860">
        <property type="entry name" value="Phage_portal"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01537">
        <property type="entry name" value="portal_HK97"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ABX34276.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="429" mass="47386" checksum="E56A98B84C3A11BF" modified="2008-01-15" version="1">MKKPKQRRIGPIRSAIRDWLGVPVSIGDAEGMAAIFASSTGSGVSVTSQNVLKLSAVWACVRLISETIATLPLSMYERTPTGKRTASGHWLHAIIHDQPNADSTASVFWEAVVAAMLLRDGARCEKLMIGPRIVGLQFLAPSRLTWSRNANGLKEYRYTDENGRQRVIPRDRVWYIPGFSIDGVNGVSAIRYGAEVFGQALAADQTAAKTFKDGLLQTLYYKLKDWMSPAQRKEFKENIQDSVERGERPVLEGGIDVAAVGLNPKDAQLLESRSFSVEEICRWFRVPPFMVGHSEKSTSWGTGIEQQMIGFLTFTLGPWLKRLEQSISKDLLTPAERLRFYPKFAVEGLLRADSAARAAFYAAMVNNGVLTRDEVRQLEDREPMGGNAAVLTVQSAMTTLDAIGQSTDSQQARAALRAFLGFDEQPQKG</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="86" xmlns="http://uniprot.org/uniprot">
    <accession>A9BYJ3</accession>
    <name>A9BYJ3_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Transcriptional regulator, LysR family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Daci_1896</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="4" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the LysR transcriptional regulatory family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX34536.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012203821.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_1896"/>
    <dbReference type="PRIDE" id="A9BYJ3"/>
    <dbReference type="EnsemblBacteria" id="ABX34536">
        <property type="protein sequence ID" value="ABX34536"/>
        <property type="gene ID" value="Daci_1896"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_1896"/>
    <dbReference type="eggNOG" id="COG0583">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_039613_6_0_4"/>
    <dbReference type="OMA" id="EQCIAGV"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003700">
        <property type="term" value="F:DNA-binding transcription factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005119">
        <property type="entry name" value="LysR_subst-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000847">
        <property type="entry name" value="Tscrpt_reg_HTH_LysR"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036390">
        <property type="entry name" value="WH_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00126">
        <property type="entry name" value="HTH_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03466">
        <property type="entry name" value="LysR_substrate"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00039">
        <property type="entry name" value="HTHLYSR"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46785">
        <property type="entry name" value="SSF46785"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50931">
        <property type="entry name" value="HTH_LYSR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HTH lysR-type" evidence="2">
        <location>
            <begin position="1"/>
            <end position="58"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00009437"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS50931"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ABX34536.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="296" mass="32316" checksum="42C43CA53F2D6BEE" modified="2008-01-15" version="1">MELRQLRYFVDIAKTEHLTTSARNLYVTQSTLSHGLRQLEEELGMALFERIGRGLKLSQAGVVFRNYAERALHEVEAGRMALADLSELQTGTLTIGVIPTFLNTLVAPAVAAFMRAYPKVNVVVIELLAPPVEQGLLDGSLDLGVSFHPPQRAELDALPLFDERMMLLVNPSHPLAGRRTLSVKSLTGVPLALLPRTFYTRSLIEDGLRTAGVTPLLRAEMGSVESLIALCRWGDMATIVPERAAQQATDMVAIHLVAPQLIRTAGLLWRRGASYSAAAREFAAQLAPATRTSLGR</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2021-06-02" version="33" xmlns="http://uniprot.org/uniprot">
    <accession>A9BYP5</accession>
    <name>A9BYP5_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_1948</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX34588.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012203873.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_1948"/>
    <dbReference type="EnsemblBacteria" id="ABX34588">
        <property type="protein sequence ID" value="ABX34588"/>
        <property type="gene ID" value="Daci_1948"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_1948"/>
    <dbReference type="eggNOG" id="ENOG502ZVWU">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_2245534_0_0_4"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="1">
        <location>
            <begin position="1"/>
            <end position="19"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5002732664" evidence="1">
        <location>
            <begin position="20"/>
            <end position="104"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX34588.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="104" mass="10703" checksum="3045B6F48CCDA7A8" modified="2008-01-15" version="1">MSQIYCAGFVTITMPGFSAATGASSAATAIPVASDGNRPRYVRVAARNECYVKLGISTVVATANDILVQPADSVILHVPNGITHIAYIQGTAAGQVNVTPLEQA</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="81" xmlns="http://uniprot.org/uniprot">
    <accession>A9BYU9</accession>
    <name>A9BYU9_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Transcriptional regulator, LysR family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ordered locus">Daci_2204</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="5" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the LysR transcriptional regulatory family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX34844.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_2204"/>
    <dbReference type="PRIDE" id="A9BYU9"/>
    <dbReference type="EnsemblBacteria" id="ABX34844">
        <property type="protein sequence ID" value="ABX34844"/>
        <property type="gene ID" value="Daci_2204"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_2204"/>
    <dbReference type="eggNOG" id="COG0583">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_039613_1_1_4"/>
    <dbReference type="OMA" id="WHMAYTS"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003700">
        <property type="term" value="F:DNA-binding transcription factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005119">
        <property type="entry name" value="LysR_subst-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000847">
        <property type="entry name" value="Tscrpt_reg_HTH_LysR"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036390">
        <property type="entry name" value="WH_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00126">
        <property type="entry name" value="HTH_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03466">
        <property type="entry name" value="LysR_substrate"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00039">
        <property type="entry name" value="HTHLYSR"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46785">
        <property type="entry name" value="SSF46785"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50931">
        <property type="entry name" value="HTH_LYSR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HTH lysR-type" evidence="3">
        <location>
            <begin position="20"/>
            <end position="77"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="1"/>
            <end position="21"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00009437"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="PROSITE" id="PS50931"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="ABX34844.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="306" mass="32872" checksum="10A419A0A07ECC21" modified="2008-01-15" version="1">MPGSDKATEIRPRPMQPSSIDPTLLRSFCAVAETGSFTRAAQGVHLTQSTVSQQIRRLEEQMGCTLLDRSGRHVECTLEGERLLAYAQRILALMDEAVEQLAGATEAVLRIGVPEDFAGHALMPALGALARSQPQLRLELTSGLSQAIWQQLQAGELDLAIVKQRSGSTPGMARWPEPLAWIDSARHPCHGMDPLPLVVFPQGGLYRSEMTHALDAAGRRWRLAYVSASLASLEAAVEQGLGISLLPRRLVGPGHRLLDGMAGFAPVPDVEVALHVRAPLSAPGRRLAERLSEVCEALLSPAAGEA</sequence>
</entry>
<entry dataset="Swiss-Prot" created="2009-03-24" modified="2022-08-03" version="83" xmlns="http://uniprot.org/uniprot">
    <accession>A9BZ45</accession>
    <name>SYC_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Cysteine--tRNA ligase</fullName>
            <ecNumber evidence="1">6.1.1.16</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="1">Cysteinyl-tRNA synthetase</fullName>
            <shortName evidence="1">CysRS</shortName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="1" type="primary">cysS</name>
        <name type="ordered locus">Daci_2507</name>
    </gene>
    <organism>
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference key="1">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain>DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>ATP + L-cysteine + tRNA(Cys) = AMP + diphosphate + L-cysteinyl-tRNA(Cys)</text>
            <dbReference type="Rhea" id="RHEA:17773"/>
            <dbReference type="Rhea" id="RHEA-COMP:9661"/>
            <dbReference type="Rhea" id="RHEA-COMP:9679"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:33019"/>
            <dbReference type="ChEBI" id="CHEBI:35235"/>
            <dbReference type="ChEBI" id="CHEBI:78442"/>
            <dbReference type="ChEBI" id="CHEBI:78517"/>
            <dbReference type="ChEBI" id="CHEBI:456215"/>
            <dbReference type="EC" id="6.1.1.16"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </cofactor>
        <text evidence="1">Binds 1 zinc ion per subunit.</text>
    </comment>
    <comment type="subunit">
        <text evidence="1">Monomer.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="1">Belongs to the class-I aminoacyl-tRNA synthetase family.</text>
    </comment>
    <dbReference type="EC" id="6.1.1.16" evidence="1"/>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX35145.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012204426.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A9BZ45"/>
    <dbReference type="SMR" id="A9BZ45"/>
    <dbReference type="STRING" id="398578.Daci_2507"/>
    <dbReference type="PRIDE" id="A9BZ45"/>
    <dbReference type="EnsemblBacteria" id="ABX35145">
        <property type="protein sequence ID" value="ABX35145"/>
        <property type="gene ID" value="Daci_2507"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_2507"/>
    <dbReference type="eggNOG" id="COG0215">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_013528_0_1_4"/>
    <dbReference type="OMA" id="AKYWMHN"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004817">
        <property type="term" value="F:cysteine-tRNA ligase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008270">
        <property type="term" value="F:zinc ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006423">
        <property type="term" value="P:cysteinyl-tRNA aminoacylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd00672">
        <property type="entry name" value="CysRS_core"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.620">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00041">
        <property type="entry name" value="Cys_tRNA_synth"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015803">
        <property type="entry name" value="Cys-tRNA-ligase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015273">
        <property type="entry name" value="Cys-tRNA-synt_Ia_DALR"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR024909">
        <property type="entry name" value="Cys-tRNA/MSH_ligase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014729">
        <property type="entry name" value="Rossmann-like_a/b/a_fold"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR032678">
        <property type="entry name" value="tRNA-synt_1_cat_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009080">
        <property type="entry name" value="tRNAsynth_Ia_anticodon-bd"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10890">
        <property type="entry name" value="PTHR10890"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF09190">
        <property type="entry name" value="DALR_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01406">
        <property type="entry name" value="tRNA-synt_1e"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00983">
        <property type="entry name" value="TRNASYNTHCYS"/>
    </dbReference>
    <dbReference type="SMART" id="SM00840">
        <property type="entry name" value="DALR_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47323">
        <property type="entry name" value="SSF47323"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00435">
        <property type="entry name" value="cysS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword id="KW-0030">Aminoacyl-tRNA synthetase</keyword>
    <keyword id="KW-0067">ATP-binding</keyword>
    <keyword id="KW-0963">Cytoplasm</keyword>
    <keyword id="KW-0436">Ligase</keyword>
    <keyword id="KW-0479">Metal-binding</keyword>
    <keyword id="KW-0547">Nucleotide-binding</keyword>
    <keyword id="KW-0648">Protein biosynthesis</keyword>
    <keyword id="KW-1185">Reference proteome</keyword>
    <keyword id="KW-0862">Zinc</keyword>
    <feature type="chain" id="PRO_1000090830" description="Cysteine--tRNA ligase">
        <location>
            <begin position="1"/>
            <end position="461"/>
        </location>
    </feature>
    <feature type="short sequence motif" description="'HIGH' region">
        <location>
            <begin position="31"/>
            <end position="41"/>
        </location>
    </feature>
    <feature type="short sequence motif" description="'KMSKS' region">
        <location>
            <begin position="270"/>
            <end position="274"/>
        </location>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <position position="29"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <position position="213"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <position position="238"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <position position="242"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <position position="273"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000255" key="1">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00041"/>
        </source>
    </evidence>
    <sequence length="461" mass="50625" checksum="63D097C94AF292B4" modified="2008-01-15" version="1">MSLRIYNTLSRALEAFSPIEPGHVRMYVCGMTVYDLCHLGHARSMVAFDVVQRWLRASGHRVTYVRNITDIDDKIIRRAVENGETIRSLTDRMIDALHQDADALGIERPTHEPRATEYVPQMLSMIGRLQDKGLAYQGTDGDVNFAVRKFPGYGKLSGKSLDELQAGERVAVQDGKQDPLDFVLWKSAKPAEPEEVKWASPWGVGRPGWHIECSAMGCEMLGESFDIHGGGADLQFPHHENEIAQSEGATGKPFSQVWMHNGFINVDNEKMSKSLGNFFTIRDVLKEYDAETVRFFVVRSHYRSPLNYSDVHLNDARGALKRLYTALSLVAPAEVAVDWNHPAAARFKAAMDEDFGTPEAVAVLFELAAEVNRSKSAETAGLLKALAGCLGLLQGDPQAFLQAGTSEMDAGAIEAQIAARAAAKAAKDWAEADRIRKALLEQGIVLKDSPAGTTWEAAAKG</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="66" xmlns="http://uniprot.org/uniprot">
    <accession>A9BZ82</accession>
    <name>A9BZ82_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="6">Porin Gram-negative type</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ordered locus">Daci_2544</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="7" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX35182.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012204461.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_2544"/>
    <dbReference type="PRIDE" id="A9BZ82"/>
    <dbReference type="EnsemblBacteria" id="ABX35182">
        <property type="protein sequence ID" value="ABX35182"/>
        <property type="gene ID" value="Daci_2544"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_2544"/>
    <dbReference type="eggNOG" id="COG3203">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_038238_2_0_4"/>
    <dbReference type="OMA" id="DNQFNGR"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046930">
        <property type="term" value="C:pore complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015288">
        <property type="term" value="F:porin activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006811">
        <property type="term" value="P:ion transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd00342">
        <property type="entry name" value="gram_neg_porins"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.160.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR033900">
        <property type="entry name" value="Gram_neg_porin_domain"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023614">
        <property type="entry name" value="Porin_dom_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13609">
        <property type="entry name" value="Porin_4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0406">Ion transport</keyword>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-0626">Porin</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4" id="KW-0732">Signal</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1134">Transmembrane beta strand</keyword>
    <keyword evidence="3" id="KW-0813">Transport</keyword>
    <feature type="signal peptide" evidence="4">
        <location>
            <begin position="1"/>
            <end position="32"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5002732674" evidence="4">
        <location>
            <begin position="33"/>
            <end position="367"/>
        </location>
    </feature>
    <feature type="domain" description="Porin_4" evidence="5">
        <location>
            <begin position="23"/>
            <end position="342"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022452"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023065"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023114"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="Pfam" id="PF13609"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="ABX35182.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="367" mass="38425" checksum="DF976F6C0AFEC92C" modified="2008-01-15" version="1">MPLPSPITLATPMNTKTLVLITLAAAPLSALAQSSITLYGIADTGVRYTSGLTAANAASNTSGAALSSGVNTTSRFGFRGREDLGGGMYALFNLETGLNLDTGTTANSSKFFDRAAIVGLGGNWGQVTAGRQTNLLADAISPVDPVGMRFAAFNPNIATAALSSHGLGVEYGSAGATTGSYRLDNSVKYTGRLGGLTARAMYSFGETAQGGSARSSAGAGLAYGTKTWTVSGAYQRFKTADQWELKAATLGASYKWDNLRLALNTARSDGQTNATTARTVQRVHSLGATWSARSTLDLTAALYRVERERSGRAADGYTRALLFAEYKLSRRSKLYAELDRTHWSGGFQGGQNKDVATGVTAGLMHSF</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="51" xmlns="http://uniprot.org/uniprot">
    <accession>A9BZB4</accession>
    <name>A9BZB4_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ordered locus">Daci_2876</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="5" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Periplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the UPF0065 (bug) family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX35514.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012204724.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_2876"/>
    <dbReference type="PRIDE" id="A9BZB4"/>
    <dbReference type="EnsemblBacteria" id="ABX35514">
        <property type="protein sequence ID" value="ABX35514"/>
        <property type="gene ID" value="Daci_2876"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_2876"/>
    <dbReference type="eggNOG" id="COG3181">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_045683_0_0_4"/>
    <dbReference type="OMA" id="YSGYHVI"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0042597">
        <property type="term" value="C:periplasmic space"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.190.150">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005064">
        <property type="entry name" value="BUG"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR042100">
        <property type="entry name" value="Bug_dom1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR42928">
        <property type="entry name" value="PTHR42928"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03401">
        <property type="entry name" value="TctC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF017082">
        <property type="entry name" value="YflP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="3">
        <location>
            <begin position="1"/>
            <end position="28"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5002733180" evidence="3">
        <location>
            <begin position="29"/>
            <end position="328"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004418"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00006987"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="ABX35514.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="328" mass="34177" checksum="2BA6DAEB93308425" modified="2008-01-15" version="1">MKKIQRRQIAAVAMAIAGLGLGGTAALAQGGYPAKTITMIVPAAAGGTTDLAARMAAQALAPVIGQSVVVDNKGGGNGSIAASLVKRAEADGYTLLMQYSGYHVISPHLTKARNWEQGDFQPVANVLSAPQIIVVRSELPVKTLAELVAYAKANPGKLNYASSGNGSLQHVTGAMLEQQAGIKMVHVPYKGTGPALQDLLGGQVDLTFGTAPPFMPHVQSGKLRVLAVTGTQRLPSLPDAPTTAEAGYAGVNATSWFAVFAPAATPKPVIDKLTADLKKVVENPAFKQKAQEQGATADYMNPQQLGAMVKTEWSNWAQVVKSSKIEAE</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="56" xmlns="http://uniprot.org/uniprot">
    <accession>A9BZC5</accession>
    <name>A9BZC5_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Isochorismatase hydrolase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_2887</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX35525.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012204735.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_2887"/>
    <dbReference type="PRIDE" id="A9BZC5"/>
    <dbReference type="EnsemblBacteria" id="ABX35525">
        <property type="protein sequence ID" value="ABX35525"/>
        <property type="gene ID" value="Daci_2887"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_2887"/>
    <dbReference type="eggNOG" id="COG1335">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_066901_1_2_4"/>
    <dbReference type="OMA" id="PIERRNM"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016787">
        <property type="term" value="F:hydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.850">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000868">
        <property type="entry name" value="Isochorismatase-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036380">
        <property type="entry name" value="Isochorismatase-like_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00857">
        <property type="entry name" value="Isochorismatase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52499">
        <property type="entry name" value="SSF52499"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Isochorismatase" evidence="1">
        <location>
            <begin position="23"/>
            <end position="175"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF00857"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX35525.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="229" mass="24913" checksum="B059CC9DB5DF8E03" modified="2008-01-15" version="1">MSTPQTIANFNGTRPVIDPDNVAMLLIDHQSGLFQTIKDMPFTEVRANATTLAKVATLAKIPVITTASVPQGPNGPLIPEIHQYAPHARYVARNGEINAWDNPEFVAAVKATGRRQLIIAGTITSVCMAFPSIAAVHEGYQVFAVIDASGTYSKMAQEITLARIVQAGVVPMDTAAVCSEVQKTWNREDALQWAQAYSAVFPPYQLLIESYSRAQEVARNGEQLDSQRT</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="81" xmlns="http://uniprot.org/uniprot">
    <accession>A9BZU0</accession>
    <name>A9BZU0_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Short-chain dehydrogenase/reductase SDR</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_3360</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the short-chain dehydrogenases/reductases (SDR) family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX35998.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012205198.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_3360"/>
    <dbReference type="PRIDE" id="A9BZU0"/>
    <dbReference type="EnsemblBacteria" id="ABX35998">
        <property type="protein sequence ID" value="ABX35998"/>
        <property type="gene ID" value="Daci_3360"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_3360"/>
    <dbReference type="eggNOG" id="COG1028">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_010194_1_1_4"/>
    <dbReference type="OMA" id="VYLCCKA"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036291">
        <property type="entry name" value="NAD(P)-bd_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002347">
        <property type="entry name" value="SDR_fam"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00106">
        <property type="entry name" value="adh_short"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00081">
        <property type="entry name" value="GDHRDH"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00080">
        <property type="entry name" value="SDRFAMILY"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51735">
        <property type="entry name" value="SSF51735"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="RuleBase" id="RU000363"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX35998.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="263" mass="27772" checksum="F43F9FB3B70E1501" modified="2008-01-15" version="1">MTRNVQQLFDLTGKTALVTGGSRGLGLQMAHALGEAGARIMLSSRKAADLEEAAAELQAAGIDARWIAADCANEADIERLAAETLERLGQVDILINNAGASWGAPAEEHPVAAWDKVMNLNVRGYFLLSQQIARRSMIPRKTGRIINLASIAGLGGNPLGMKTIAYNTSKGAVINFTRALAGEWGVHGINVNAICPGFFKTKMASVLIETLGEDEMKSHAPLRRLGDDEDLKGLTLLYASDAGKHITGQWVAVDGGVSALVGG</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="49" xmlns="http://uniprot.org/uniprot">
    <accession>A9BZZ7</accession>
    <name>A9BZZ7_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Integrase, catalytic region</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ordered locus">Daci_3625</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="5" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="1">Required for the transposition of the insertion element.</text>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the transposase IS30 family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX36259.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_3625"/>
    <dbReference type="PRIDE" id="A9BZZ7"/>
    <dbReference type="EnsemblBacteria" id="ABX36259">
        <property type="protein sequence ID" value="ABX36259"/>
        <property type="gene ID" value="Daci_3625"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_3625"/>
    <dbReference type="eggNOG" id="COG2826">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_035706_10_3_4"/>
    <dbReference type="OMA" id="LGMDTYF"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004803">
        <property type="term" value="F:transposase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015074">
        <property type="term" value="P:DNA integration"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006313">
        <property type="term" value="P:transposition, DNA-mediated"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.420.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001584">
        <property type="entry name" value="Integrase_cat-core"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012337">
        <property type="entry name" value="RNaseH-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036397">
        <property type="entry name" value="RNaseH_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001598">
        <property type="entry name" value="Transposase_IS30_CS"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53098">
        <property type="entry name" value="SSF53098"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50994">
        <property type="entry name" value="INTEGRASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01043">
        <property type="entry name" value="TRANSPOSASE_IS30"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Integrase catalytic" evidence="3">
        <location>
            <begin position="1"/>
            <end position="70"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00002190"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00006363"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="PROSITE" id="PS50994"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="ABX36259.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="82" mass="9315" checksum="E95DC1E103E6DD73" modified="2008-01-15" version="1">MRVFFADPHSPWQRGTHENTNGLLRQYFPKGTDLSRWSGQEIQAAARTMNNRPRKTPGWKTPAEMLNDYLKSVQQPGVASTG</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="69" xmlns="http://uniprot.org/uniprot">
    <accession>A9C0I0</accession>
    <name>A9C0I0_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ordered locus">Daci_4423</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="5" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX37053.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012206225.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_4423"/>
    <dbReference type="PRIDE" id="A9C0I0"/>
    <dbReference type="EnsemblBacteria" id="ABX37053">
        <property type="protein sequence ID" value="ABX37053"/>
        <property type="gene ID" value="Daci_4423"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_4423"/>
    <dbReference type="eggNOG" id="COG1112">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="eggNOG" id="COG1198">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="eggNOG" id="COG2852">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_000788_0_1_4"/>
    <dbReference type="OMA" id="KYLMWKD"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004386">
        <property type="term" value="F:helicase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd18808">
        <property type="entry name" value="SF1_C_Upf1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="3"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045055">
        <property type="entry name" value="DNA2/NAM7-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041679">
        <property type="entry name" value="DNA2/NAM7-like_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041677">
        <property type="entry name" value="DNA2/NAM7_AAA_11"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025103">
        <property type="entry name" value="DUF4011"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011335">
        <property type="entry name" value="Restrct_endonuc-II-like"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10887">
        <property type="entry name" value="PTHR10887"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13086">
        <property type="entry name" value="AAA_11"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13087">
        <property type="entry name" value="AAA_12"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13195">
        <property type="entry name" value="DUF4011"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52980">
        <property type="entry name" value="SSF52980"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="AAA_11" evidence="2">
        <location>
            <begin position="692"/>
            <end position="757"/>
        </location>
    </feature>
    <feature type="domain" description="AAA_11" evidence="2">
        <location>
            <begin position="1540"/>
            <end position="1595"/>
        </location>
    </feature>
    <feature type="domain" description="AAA_12" evidence="3">
        <location>
            <begin position="1628"/>
            <end position="1815"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="23"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1983"/>
            <end position="2016"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF13086"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF13087"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="ABX37053.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="2016" mass="219877" checksum="29AC70D93D3F97C1" modified="2008-01-15" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="62" xmlns="http://uniprot.org/uniprot">
    <accession>A9C0P7</accession>
    <name>A9C0P7_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="9">Diguanylate cyclase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="9" type="ordered locus">Daci_4491</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="9 10" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="10" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX37120.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_4491"/>
    <dbReference type="PRIDE" id="A9C0P7"/>
    <dbReference type="EnsemblBacteria" id="ABX37120">
        <property type="protein sequence ID" value="ABX37120"/>
        <property type="gene ID" value="Daci_4491"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_4491"/>
    <dbReference type="eggNOG" id="COG3706">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_000445_134_2_4"/>
    <dbReference type="OMA" id="WVITISR"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd01949">
        <property type="entry name" value="GGDEF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.70.270">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR033479">
        <property type="entry name" value="dCache_1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000160">
        <property type="entry name" value="GGDEF_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029787">
        <property type="entry name" value="Nucleotide_cyclase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043128">
        <property type="entry name" value="Rev_trsase/Diguanyl_cyclase"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02743">
        <property type="entry name" value="dCache_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00990">
        <property type="entry name" value="GGDEF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00267">
        <property type="entry name" value="GGDEF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55073">
        <property type="entry name" value="SSF55073"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00254">
        <property type="entry name" value="GGDEF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50887">
        <property type="entry name" value="GGDEF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="6" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="5 7" id="KW-0472">Membrane</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 7" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="4 7" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="24"/>
            <end position="45"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="299"/>
            <end position="320"/>
        </location>
    </feature>
    <feature type="domain" description="GGDEF" evidence="8">
        <location>
            <begin position="382"/>
            <end position="531"/>
        </location>
    </feature>
    <feature type="coiled-coil region" evidence="6">
        <location>
            <begin position="327"/>
            <end position="354"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="PROSITE" id="PS50887"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="ABX37120.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="531" mass="57849" checksum="E3C1689EF9F84579" modified="2008-01-15" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-05-25" version="56" xmlns="http://uniprot.org/uniprot">
    <accession>A9C141</accession>
    <name>A9C141_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Phenazine biosynthesis protein PhzF family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Daci_5876</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="4" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the PhzF family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX38504.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_5876"/>
    <dbReference type="EnsemblBacteria" id="ABX38504">
        <property type="protein sequence ID" value="ABX38504"/>
        <property type="gene ID" value="Daci_5876"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_5876"/>
    <dbReference type="eggNOG" id="COG0384">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_048756_0_0_4"/>
    <dbReference type="OMA" id="NGPRWIG"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003824">
        <property type="term" value="F:catalytic activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009058">
        <property type="term" value="P:biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003719">
        <property type="entry name" value="Phenazine_PhzF"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR13774">
        <property type="entry name" value="PTHR13774"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02567">
        <property type="entry name" value="PhzC-PhzF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF016184">
        <property type="entry name" value="PhzC_PhzF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00654">
        <property type="entry name" value="PhzF_family"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="active site" evidence="2">
        <location>
            <position position="40"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00008270"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="PIRSR" id="PIRSR016184-1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ABX38504.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="279" mass="29598" checksum="995175DD42779F61" modified="2008-01-15" version="1">MVDVFASGPLSGNPLAVITGGQALTTAQMQQLTRWFNLSETAFLLPPTQAQADYRVRIFTLDREMPFAGHPTLGSCHAWLSQHGAPRNAGHIVQECGAGLVQIRQEHGRLAFAAPPMLRFGAPTADELDAALRMLGITAEEVQAASWIDNGPGWLGIRLASAEQVLALNPARQWPTRMDVGVVGPYARGVGGASPAACEVRAFFSDHQGAIVEDPVTGSLNASLAQWLFATGVMDSDYIAAQGRCLGRDGRIFLTRDGTGQVWVGGTARTHVEGALSGL</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="95" xmlns="http://uniprot.org/uniprot">
    <accession>A9C185</accession>
    <name>A9C185_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Two component transcriptional regulator, winged helix family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ordered locus">Daci_5920</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="6" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX38548.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012207717.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_5920"/>
    <dbReference type="PRIDE" id="A9C185"/>
    <dbReference type="EnsemblBacteria" id="ABX38548">
        <property type="protein sequence ID" value="ABX38548"/>
        <property type="gene ID" value="Daci_5920"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_5920"/>
    <dbReference type="eggNOG" id="COG0745">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_000445_30_8_4"/>
    <dbReference type="OMA" id="KARKYEV"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000160">
        <property type="term" value="P:phosphorelay signal transduction system"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006355">
        <property type="term" value="P:regulation of transcription, DNA-templated"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd00383">
        <property type="entry name" value="trans_reg_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011006">
        <property type="entry name" value="CheY-like_superfamily"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001867">
        <property type="entry name" value="OmpR/PhoB-type_DNA-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001789">
        <property type="entry name" value="Sig_transdc_resp-reg_receiver"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR039420">
        <property type="entry name" value="WalR-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR48111">
        <property type="entry name" value="PTHR48111"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00072">
        <property type="entry name" value="Response_reg"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00486">
        <property type="entry name" value="Trans_reg_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00448">
        <property type="entry name" value="REC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00862">
        <property type="entry name" value="Trans_reg_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52172">
        <property type="entry name" value="SSF52172"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51755">
        <property type="entry name" value="OMPR_PHOB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50110">
        <property type="entry name" value="RESPONSE_REGULATORY"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="1" id="KW-0597">Phosphoprotein</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Response regulatory" evidence="3">
        <location>
            <begin position="7"/>
            <end position="120"/>
        </location>
    </feature>
    <feature type="domain" description="OmpR/PhoB-type" evidence="4">
        <location>
            <begin position="138"/>
            <end position="237"/>
        </location>
    </feature>
    <feature type="DNA-binding region" description="OmpR/PhoB-type" evidence="2">
        <location>
            <begin position="138"/>
            <end position="237"/>
        </location>
    </feature>
    <feature type="modified residue" description="4-aspartylphosphate" evidence="1">
        <location>
            <position position="56"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00169"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU01091"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="PROSITE" id="PS50110"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="PROSITE" id="PS51755"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="ABX38548.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="247" mass="27144" checksum="395450FB3DCAD5EB" modified="2008-01-15" version="1">MSTPANRILMIEDDPGIRRFVRLVLEDEGWQVFEADSARRGLIEAASRQPDLVILDLGLPDADGKQVLTELRGWSSVPVLVLSAREREDEKVAALDAGADDYLVKPFGVPELLARLRVMLRRRQQLGAAGGAGGTAASSKVHFGPVQVDLATHEVRRAGQPVHLTPIEFRLLAALIAAQGRVLTHRQLLLQVWGPEYLSRAHYLRVHMANLRQKIEDEPAQPRHLVTELQVGYRLVGLGGEASTGSV</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="48" xmlns="http://uniprot.org/uniprot">
    <accession>A9C1H5</accession>
    <name>A9C1H5_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_6010</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX38638.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_6010"/>
    <dbReference type="PRIDE" id="A9C1H5"/>
    <dbReference type="EnsemblBacteria" id="ABX38638">
        <property type="protein sequence ID" value="ABX38638"/>
        <property type="gene ID" value="Daci_6010"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_6010"/>
    <dbReference type="eggNOG" id="COG5267">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_026001_0_1_4"/>
    <dbReference type="OMA" id="MANQHAD"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014917">
        <property type="entry name" value="DUF1800"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08811">
        <property type="entry name" value="DUF1800"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="1">
        <location>
            <begin position="1"/>
            <end position="27"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5002736084" evidence="1">
        <location>
            <begin position="28"/>
            <end position="533"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX38638.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="533" mass="59310" checksum="7AC6C5A5AF9DC389" modified="2008-01-15" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="66" xmlns="http://uniprot.org/uniprot">
    <accession>A9C1N0</accession>
    <name>A9C1N0_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Transcriptional regulator, XRE family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Daci_2577</name>
        <name evidence="4" type="ordered locus">Daci_2611</name>
    </gene>
    <organism evidence="3 5">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 5" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">DSM 14801 / SPH-1</strain>
            <strain evidence="3">SPH-1</strain>
        </source>
    </reference>
    <reference evidence="5" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="3">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="3">SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX35215.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX35249.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012204494.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_2577"/>
    <dbReference type="PRIDE" id="A9C1N0"/>
    <dbReference type="EnsemblBacteria" id="ABX35215">
        <property type="protein sequence ID" value="ABX35215"/>
        <property type="gene ID" value="Daci_2577"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="ABX35249">
        <property type="protein sequence ID" value="ABX35249"/>
        <property type="gene ID" value="Daci_2611"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_2577"/>
    <dbReference type="KEGG" id="dac:Daci_2611"/>
    <dbReference type="eggNOG" id="COG1396">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_1903267_0_0_4"/>
    <dbReference type="OMA" id="ISVRQLM"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd00093">
        <property type="entry name" value="HTH_XRE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.260.40">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001387">
        <property type="entry name" value="Cro/C1-type_HTH"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010982">
        <property type="entry name" value="Lambda_DNA-bd_dom_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01381">
        <property type="entry name" value="HTH_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00530">
        <property type="entry name" value="HTH_XRE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47413">
        <property type="entry name" value="SSF47413"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50943">
        <property type="entry name" value="HTH_CROC1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HTH cro/C1-type" evidence="2">
        <location>
            <begin position="15"/>
            <end position="67"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="95"/>
            <end position="135"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS50943"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ABX35215.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="ABX35249.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="135" mass="14595" checksum="E9220993DF22CF13" modified="2008-01-15" version="1">MDHLLQLPDQLALHLKSLRKAAGVSQAQLAQRLGVSQSRVAAIERDPAAISVRQLMEILQLLDADLLMRPRADAVASPASAPMSVPAPAALRVAEPAPQPYAGDNVPRKPADRPVAFKPQALPPHWQDRKPKGSW</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="35" xmlns="http://uniprot.org/uniprot">
    <accession>A9C1N3</accession>
    <name>A9C1N3_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Daci_2580</name>
        <name evidence="2" type="ordered locus">Daci_2614</name>
    </gene>
    <organism evidence="1 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
            <strain evidence="1">SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="1" key="3">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX35218.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX35252.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012204497.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_2580"/>
    <dbReference type="PRIDE" id="A9C1N3"/>
    <dbReference type="EnsemblBacteria" id="ABX35218">
        <property type="protein sequence ID" value="ABX35218"/>
        <property type="gene ID" value="Daci_2580"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="ABX35252">
        <property type="protein sequence ID" value="ABX35252"/>
        <property type="gene ID" value="Daci_2614"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_2580"/>
    <dbReference type="KEGG" id="dac:Daci_2614"/>
    <dbReference type="eggNOG" id="ENOG5033DVU">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_192084_0_0_4"/>
    <dbReference type="OMA" id="HATTSAC"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ABX35218.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX35252.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="82" mass="8980" checksum="F13D124719C22F82" modified="2008-01-15" version="1">MHHNITALRSYRATLIPHGVDAAQLDQLADARLLPVLRLKAASASHAQACALLASGRPVLRVERVERVERKKAGKSITTRHP</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="59" xmlns="http://uniprot.org/uniprot">
    <accession>A9C1P5</accession>
    <name>A9C1P5_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Tail sheath protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ordered locus">Daci_2592</name>
        <name evidence="5" type="ordered locus">Daci_2626</name>
    </gene>
    <organism evidence="4 6">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 6" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">DSM 14801 / SPH-1</strain>
            <strain evidence="4">SPH-1</strain>
        </source>
    </reference>
    <reference evidence="6" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="4" key="3">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="4">SPH-1</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the myoviridae tail sheath protein family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX35230.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX35264.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012204509.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_2592"/>
    <dbReference type="PRIDE" id="A9C1P5"/>
    <dbReference type="EnsemblBacteria" id="ABX35230">
        <property type="protein sequence ID" value="ABX35230"/>
        <property type="gene ID" value="Daci_2592"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="ABX35264">
        <property type="protein sequence ID" value="ABX35264"/>
        <property type="gene ID" value="Daci_2626"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_2592"/>
    <dbReference type="KEGG" id="dac:Daci_2626"/>
    <dbReference type="eggNOG" id="COG3497">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_037707_0_0_4"/>
    <dbReference type="OMA" id="FRQRITD"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035089">
        <property type="entry name" value="Phage_sheath_subtilisin"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020287">
        <property type="entry name" value="Tail_sheath_C"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04984">
        <property type="entry name" value="Phage_sheath_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF17482">
        <property type="entry name" value="Phage_sheath_1C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Phage_sheath_1" evidence="2">
        <location>
            <begin position="115"/>
            <end position="279"/>
        </location>
    </feature>
    <feature type="domain" description="Phage_sheath_1C" evidence="3">
        <location>
            <begin position="281"/>
            <end position="382"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00008005"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF04984"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF17482"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="ABX35230.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="ABX35264.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="397" mass="42721" checksum="316F4695E86B5850" modified="2008-01-15" version="1">MATAPFHHGIRVTEVSEGINSIRIVSTAVIGLVATASDADAATFPLNRPVLVTKVDAAIGKAGTKGTLALALNAIKEQCRPVLVVVRVADGEGATEAERRTDQDAKVIGTTAGNQYTGLQALLAAQAQLGVKPRILGAPGLDSQAVTDALASVAIKLRGFAYAAAIGNDVAEAQAYREHFGQRELMLLWPGFKALDLSTAAVQDASPVAYALGLRARIDQEQGWHKTLSNVPLSGVLGISRDVHWDLQSPDTEAGILNQAGITTLIQSQGHRFWGSRTCTDSELFRFESSVRTAQVLADTMAEAHFWAVDKPMHPSLVKDILEGINTKFRELKALGYILDGKAWYDETVNETATLKAGKLVLDYDYTPVPPLEDLGFRQRITDRYFADFALRVGTGQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="72" xmlns="http://uniprot.org/uniprot">
    <accession>A9C1Y6</accession>
    <name>A9C1Y6_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Heat shock protein DnaJ domain protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ordered locus">Daci_2984</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="5" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX35622.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012204828.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_2984"/>
    <dbReference type="PRIDE" id="A9C1Y6"/>
    <dbReference type="EnsemblBacteria" id="ABX35622">
        <property type="protein sequence ID" value="ABX35622"/>
        <property type="gene ID" value="Daci_2984"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_2984"/>
    <dbReference type="eggNOG" id="COG0484">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_017633_0_0_4"/>
    <dbReference type="OMA" id="WDAGFEF"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051082">
        <property type="term" value="F:unfolded protein binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006457">
        <property type="term" value="P:protein folding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd06257">
        <property type="entry name" value="DnaJ"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.287.110">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002939">
        <property type="entry name" value="DnaJ_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001623">
        <property type="entry name" value="DnaJ_domain"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008971">
        <property type="entry name" value="HSP40/DnaJ_pept-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036869">
        <property type="entry name" value="J_dom_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00226">
        <property type="entry name" value="DnaJ"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01556">
        <property type="entry name" value="DnaJ_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00625">
        <property type="entry name" value="JDOMAIN"/>
    </dbReference>
    <dbReference type="SMART" id="SM00271">
        <property type="entry name" value="DnaJ"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46565">
        <property type="entry name" value="SSF46565"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF49493">
        <property type="entry name" value="SSF49493"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50076">
        <property type="entry name" value="DNAJ_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0143">Chaperone</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4" id="KW-0346">Stress response</keyword>
    <feature type="domain" description="J" evidence="3">
        <location>
            <begin position="5"/>
            <end position="69"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="70"/>
            <end position="101"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023186"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="PROSITE" id="PS50076"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="ABX35622.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="331" mass="35690" checksum="40BA4E925326E654" modified="2008-01-15" version="1">MDYKDYYRILAVDRQASADDIKKAYRKLARKYHPDVSKEADASERMAEVNEANAVLSDPEKRAAYDALADAPRRSGPGAGGFQPPPGWEGQDFHFRSSDGAMPEGDADFSEFFSQMFGQAARARHAGGGGQHRAPPDMRGQDQHASIELDLLDSYQGAQRSLHLRTTVLDEDGHPVARDKELQVSIPKGVREGQMIRLAGQGGPGLGNGPAGDLLLEVHLRHDPRWWAEGKDVYQPVSLAPWEAALGGPVRVATIAGEFEVSVPAGSRAGRKLRIKGKGLPAATPGDLYLVLGIALPEPKTDAQRQAYAALAQAFPSFDARQHAAGQGATR</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="82" xmlns="http://uniprot.org/uniprot">
    <accession>A9C247</accession>
    <name>A9C247_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="4">DEAD/H associated domain protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ordered locus">Daci_3045</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="5" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX35683.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012204889.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_3045"/>
    <dbReference type="PRIDE" id="A9C247"/>
    <dbReference type="EnsemblBacteria" id="ABX35683">
        <property type="protein sequence ID" value="ABX35683"/>
        <property type="gene ID" value="Daci_3045"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_3045"/>
    <dbReference type="eggNOG" id="COG1201">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_002025_0_1_4"/>
    <dbReference type="OMA" id="VVDEWHE"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0140640">
        <property type="term" value="F:catalytic activity, acting on a nucleic acid"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016818">
        <property type="term" value="F:hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003676">
        <property type="term" value="F:nucleic acid binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013701">
        <property type="entry name" value="DEAD/DEAH_assoc"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011545">
        <property type="entry name" value="DEAD/DEAH_box_helicase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR026362">
        <property type="entry name" value="DEXH_lig_assoc"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014001">
        <property type="entry name" value="Helicase_ATP-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001650">
        <property type="entry name" value="Helicase_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017170">
        <property type="entry name" value="Lhr-like_ATP-dep_RNA_helic_prd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045628">
        <property type="entry name" value="Lhr_WH_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00270">
        <property type="entry name" value="DEAD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08494">
        <property type="entry name" value="DEAD_assoc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00271">
        <property type="entry name" value="Helicase_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF19306">
        <property type="entry name" value="Lhr_WH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF037307">
        <property type="entry name" value="Lhr-like_helic_prd"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SMART" id="SM00487">
        <property type="entry name" value="DEXDc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00490">
        <property type="entry name" value="HELICc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR04121">
        <property type="entry name" value="DEXH_lig_assoc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51192">
        <property type="entry name" value="HELICASE_ATP_BIND_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51194">
        <property type="entry name" value="HELICASE_CTER"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Helicase ATP-binding" evidence="2">
        <location>
            <begin position="29"/>
            <end position="235"/>
        </location>
    </feature>
    <feature type="domain" description="Helicase C-terminal" evidence="3">
        <location>
            <begin position="273"/>
            <end position="428"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="888"/>
            <end position="966"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="907"/>
            <end position="921"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS51192"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="PROSITE" id="PS51194"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="ABX35683.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="966" mass="105472" checksum="32490091D0DF2BF0" modified="2008-01-15" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="90" xmlns="http://uniprot.org/uniprot">
    <accession>A9C270</accession>
    <name>A9C270_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="4">Peptide methionine sulfoxide reductase MsrA</fullName>
            <shortName evidence="4">Protein-methionine-S-oxide reductase</shortName>
            <ecNumber evidence="4">1.8.4.11</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="4">Peptide-methionine (S)-S-oxide reductase</fullName>
            <shortName evidence="4">Peptide Met(O) reductase</shortName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="4" type="primary">msrA</name>
        <name evidence="6" type="ordered locus">Daci_3068</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="7" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="4">Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1 4">
            <text>[thioredoxin]-disulfide + H2O + L-methionine = [thioredoxin]-dithiol + L-methionine (S)-S-oxide</text>
            <dbReference type="Rhea" id="RHEA:19993"/>
            <dbReference type="Rhea" id="RHEA-COMP:10698"/>
            <dbReference type="Rhea" id="RHEA-COMP:10700"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:29950"/>
            <dbReference type="ChEBI" id="CHEBI:50058"/>
            <dbReference type="ChEBI" id="CHEBI:57844"/>
            <dbReference type="ChEBI" id="CHEBI:58772"/>
            <dbReference type="EC" id="1.8.4.11"/>
        </reaction>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="2 4">
            <text>[thioredoxin]-disulfide + H2O + L-methionyl-[protein] = [thioredoxin]-dithiol + L-methionyl-(S)-S-oxide-[protein]</text>
            <dbReference type="Rhea" id="RHEA:14217"/>
            <dbReference type="Rhea" id="RHEA-COMP:10698"/>
            <dbReference type="Rhea" id="RHEA-COMP:10700"/>
            <dbReference type="Rhea" id="RHEA-COMP:12313"/>
            <dbReference type="Rhea" id="RHEA-COMP:12315"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:16044"/>
            <dbReference type="ChEBI" id="CHEBI:29950"/>
            <dbReference type="ChEBI" id="CHEBI:44120"/>
            <dbReference type="ChEBI" id="CHEBI:50058"/>
            <dbReference type="EC" id="1.8.4.11"/>
        </reaction>
    </comment>
    <comment type="similarity">
        <text evidence="4">Belongs to the MsrA Met sulfoxide reductase family.</text>
    </comment>
    <dbReference type="EC" id="1.8.4.11" evidence="4"/>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX35706.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012204912.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_3068"/>
    <dbReference type="EnsemblBacteria" id="ABX35706">
        <property type="protein sequence ID" value="ABX35706"/>
        <property type="gene ID" value="Daci_3068"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_3068"/>
    <dbReference type="eggNOG" id="COG0225">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_031040_10_0_4"/>
    <dbReference type="OMA" id="AGPFYYA"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0033744">
        <property type="term" value="F:L-methionine:thioredoxin-disulfide S-oxidoreductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="RHEA"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008113">
        <property type="term" value="F:peptide-methionine (S)-S-oxide reductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.1060.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01401">
        <property type="entry name" value="MsrA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002569">
        <property type="entry name" value="Met_Sox_Rdtase_MsrA_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036509">
        <property type="entry name" value="Met_Sox_Rdtase_MsrA_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01625">
        <property type="entry name" value="PMSR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55068">
        <property type="entry name" value="SSF55068"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00401">
        <property type="entry name" value="msrA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3 4 6" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="PMSR" evidence="5">
        <location>
            <begin position="63"/>
            <end position="215"/>
        </location>
    </feature>
    <feature type="active site" evidence="4">
        <location>
            <position position="70"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001063"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00001497"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023002"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01401"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="Pfam" id="PF01625"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="ABX35706.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="249" mass="26790" checksum="53109F37F322CA1D" modified="2008-01-15" version="1">MTNDSNLAAAPRRRGLLQLLTGSAVLLGGALLWQGSNLQAAEQAVRIPPPAQDATATGQGPQKAIFAGGCFWGVQGVFQHVKGVQRAVSGYSGGTAAQASYSAVSSGRTGHAESVEITYDPAQVSYGQLLQIYFSVAHDPTQLNRQGPDTGTQYRSAIFATDAAQLKTAQAYVAQLDAAKVFGKPIVTRLEDKPSFFPAENYHQDFMTENPRHPYIVINDLPKVEQLKQLFPGSYRAEPVLVKQAARQM</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="64" xmlns="http://uniprot.org/uniprot">
    <accession>A9C2L2</accession>
    <name>A9C2L2_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Periplasmic binding protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ordered locus">Daci_3729</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="5" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX36361.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012205555.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_3729"/>
    <dbReference type="PRIDE" id="A9C2L2"/>
    <dbReference type="EnsemblBacteria" id="ABX36361">
        <property type="protein sequence ID" value="ABX36361"/>
        <property type="gene ID" value="Daci_3729"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_3729"/>
    <dbReference type="eggNOG" id="COG0614">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_038034_2_5_4"/>
    <dbReference type="OMA" id="WQGINLE"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002491">
        <property type="entry name" value="ABC_transptr_periplasmic_BD"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01497">
        <property type="entry name" value="Peripla_BP_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50983">
        <property type="entry name" value="FE_B12_PBP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="2">
        <location>
            <begin position="1"/>
            <end position="28"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5002736099" evidence="2">
        <location>
            <begin position="29"/>
            <end position="312"/>
        </location>
    </feature>
    <feature type="domain" description="Fe/B12 periplasmic-binding" evidence="3">
        <location>
            <begin position="61"/>
            <end position="308"/>
        </location>
    </feature>
    <feature type="coiled-coil region" evidence="1">
        <location>
            <begin position="147"/>
            <end position="183"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="PROSITE" id="PS50983"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="ABX36361.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="312" mass="33572" checksum="ADB9A2ECF3447CDE" modified="2008-01-15" version="1">MHLLVRLPRLLLLIAVLACAGGTGNAFAQKAADAGTGGATTAYTVTDMRGRQVRLERVPQRIVSLLPSLTESLCALDACERIVGVDEFSNHPARVAALPKLGHTFAPLVEATVRLRPDVVLMAYSAPVIAQLERFGIPVLALDANDMAQLEQVLHKLDQLLQVQRANALLARMQAEVDQQAKALAALTPAGQKVYFEVDATPYAAGPDSFIGQLLQRLGARNVLPQNLGPFPRITPEYVLRQQPELIIHTPQTPSASFATRPGWSRMPAVRSGRICALDLVETDVVSRPGPRLGEAARALGRCLQMPGAAPR</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="44" xmlns="http://uniprot.org/uniprot">
    <accession>A9C2Y6</accession>
    <name>A9C2Y6_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_4159</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX36790.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012205968.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_4159"/>
    <dbReference type="PRIDE" id="A9C2Y6"/>
    <dbReference type="EnsemblBacteria" id="ABX36790">
        <property type="protein sequence ID" value="ABX36790"/>
        <property type="gene ID" value="Daci_4159"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_4159"/>
    <dbReference type="eggNOG" id="ENOG502Z8W2">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_106522_1_0_4"/>
    <dbReference type="OMA" id="YIYPKAY"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR021693">
        <property type="entry name" value="DUF3275"/>
    </dbReference>
    <dbReference type="Pfam" id="PF11679">
        <property type="entry name" value="DUF3275"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="117"/>
            <end position="155"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX36790.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="232" mass="25164" checksum="A4D2F291067874F6" modified="2008-01-15" version="1">MTAKSAPEQSVSPIIVPGQLTLRTIRGKNGPFTVGRLATHLGTFEVKDPELEQYPEGKYDGEFIIRYIFPKSYPVGGGMRFEIRASLDGMTLYDIDKLSRDEARSFATQDLDPLDEELGAQPATTPATPAKPSKTSRPAKPAPVQASTDPLVDTTPFGVDAPTPAAATAPCSTEDGDAALFSLLWPLGESVKLDSTIDRRTLRAQIVRLGELGYALDFKTQEWSRQAELQPA</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="68" xmlns="http://uniprot.org/uniprot">
    <accession>A9C306</accession>
    <name>A9C306_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_4179</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX36810.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012205988.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_4179"/>
    <dbReference type="PRIDE" id="A9C306"/>
    <dbReference type="EnsemblBacteria" id="ABX36810">
        <property type="protein sequence ID" value="ABX36810"/>
        <property type="gene ID" value="Daci_4179"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_4179"/>
    <dbReference type="eggNOG" id="COG3451">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_015628_0_0_4"/>
    <dbReference type="OMA" id="NGVWWFD"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR022303">
        <property type="entry name" value="Conjug_Trfer_ATPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025955">
        <property type="entry name" value="TraC/Conjuga_ATPase"/>
    </dbReference>
    <dbReference type="Pfam" id="PF11130">
        <property type="entry name" value="TraC_F_IV"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR03744">
        <property type="entry name" value="traC_PFL_4706"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="29"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX36810.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="969" mass="108881" checksum="0EB0B7B7D0D92AD4" modified="2008-01-15" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-01-19" version="55" xmlns="http://uniprot.org/uniprot">
    <accession>A9C323</accession>
    <name>A9C323_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Daci_4196</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="2" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX36827.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012206000.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_4196"/>
    <dbReference type="EnsemblBacteria" id="ABX36827">
        <property type="protein sequence ID" value="ABX36827"/>
        <property type="gene ID" value="Daci_4196"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_4196"/>
    <dbReference type="eggNOG" id="COG0631">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_102554_0_0_4"/>
    <dbReference type="OMA" id="IHIHWEL"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.60.40.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036457">
        <property type="entry name" value="PPM-type_dom_sf"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF81606">
        <property type="entry name" value="SSF81606"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ABX36827.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="238" mass="25353" checksum="8AD465D2A7C657EF" modified="2008-01-15" version="1">MTLWKSFGASVRGPSHIAEGLPNQDAWAKFHHVWGDGIVVSDGVGSKPFSSFGSHAACLAVEFAARACCTGGEIEHNALFSNIQANWLRLVAPLEPRDCAATCLFALHLDGVIHLGMLGDGLAAIAKSDGSVVSLSENKTQGFSNITTALSSKVSAKDWQYLSLPGEQCIAVLLCTDGVADDLDNADGFVSSFAETHRTLAPVSANRRIHEMLENWPTPKHSDDKTLACLCSEEVADE</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="69" xmlns="http://uniprot.org/uniprot">
    <accession>A9C382</accession>
    <name>A9C382_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Gamma-glutamyltransferase</fullName>
            <ecNumber evidence="1">2.3.2.2</ecNumber>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Daci_4564</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="2" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EC" id="2.3.2.2" evidence="1"/>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX37193.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012206363.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_4564"/>
    <dbReference type="MEROPS" id="T03.025"/>
    <dbReference type="PRIDE" id="A9C382"/>
    <dbReference type="EnsemblBacteria" id="ABX37193">
        <property type="protein sequence ID" value="ABX37193"/>
        <property type="gene ID" value="Daci_4564"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_4564"/>
    <dbReference type="eggNOG" id="COG0405">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_014813_3_1_4"/>
    <dbReference type="OMA" id="FWPLGHL"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0102953">
        <property type="term" value="F:hypoglycin A gamma-glutamyl transpeptidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0103068">
        <property type="term" value="F:leukotriene C4 gamma-glutamyl transferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.246.130">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.60.20.40">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043138">
        <property type="entry name" value="GGT_lsub_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043137">
        <property type="entry name" value="GGT_ssub"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029055">
        <property type="entry name" value="Ntn_hydrolases_N"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56235">
        <property type="entry name" value="SSF56235"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0012">Acyltransferase</keyword>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0808">Transferase</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ABX37193.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="543" mass="58318" checksum="D9F1258BF71B9BE6" modified="2008-01-15" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="89" xmlns="http://uniprot.org/uniprot">
    <accession>A9C3F4</accession>
    <name>A9C3F4_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="8">ABC transporter related</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="8" type="ordered locus">Daci_4636</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="9" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX37265.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012206435.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_4636"/>
    <dbReference type="PRIDE" id="A9C3F4"/>
    <dbReference type="EnsemblBacteria" id="ABX37265">
        <property type="protein sequence ID" value="ABX37265"/>
        <property type="gene ID" value="Daci_4636"/>
    </dbReference>
    <dbReference type="GeneID" id="60688830"/>
    <dbReference type="KEGG" id="dac:Daci_4636"/>
    <dbReference type="eggNOG" id="COG1116">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_000604_1_22_4"/>
    <dbReference type="OMA" id="DHDANEA"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003593">
        <property type="entry name" value="AAA+_ATPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003439">
        <property type="entry name" value="ABC_transporter-like_ATP-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017871">
        <property type="entry name" value="ABC_transporter-like_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00005">
        <property type="entry name" value="ABC_tran"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00382">
        <property type="entry name" value="AAA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00211">
        <property type="entry name" value="ABC_TRANSPORTER_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50893">
        <property type="entry name" value="ABC_TRANSPORTER_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3 6" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="1" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="5" id="KW-0472">Membrane</keyword>
    <keyword evidence="2 6" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4" id="KW-1278">Translocase</keyword>
    <feature type="domain" description="ABC transporter" evidence="7">
        <location>
            <begin position="63"/>
            <end position="287"/>
        </location>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <begin position="95"/>
            <end position="102"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022967"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00434"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="PROSITE" id="PS50893"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="ABX37265.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="326" mass="35424" checksum="E702B1C64218B209" modified="2008-01-15" version="1">MSRWNRMKTTLAQAVELNTTAPAMAWEASFDADGLDVSDRLAQNDDAPQSASPQSAPRRGVRLQAGGLTKRYGQREVLHEVQLQVEPGEFVAIVGRSGCGKSTLLRLVAGLEQATAGTLLLDGEPARAVQGAQGGTRIMFQDARLLPWRRVLANVTLGLPASAQERGREVLAQVGLADREGEWPARLSGGQRQRVALARALVHRPQLLLLDEPLGALDALTRIEMHRLIEGLWQRHGFTALLVTHDVQEAVALADRVVLIEDGRIALDERIALPRPRVHGSVALAAIEQRILDRVLQKPAAEPEANPLTDTTAWPGVPAHGLRWAV</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="46" xmlns="http://uniprot.org/uniprot">
    <accession>A9BLH8</accession>
    <name>A9BLH8_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_3832</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX36463.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012205657.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_3832"/>
    <dbReference type="PRIDE" id="A9BLH8"/>
    <dbReference type="EnsemblBacteria" id="ABX36463">
        <property type="protein sequence ID" value="ABX36463"/>
        <property type="gene ID" value="Daci_3832"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_3832"/>
    <dbReference type="eggNOG" id="COG4520">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_147877_0_0_4"/>
    <dbReference type="OMA" id="KTSENWR"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="1">
        <location>
            <begin position="1"/>
            <end position="24"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5002734856" evidence="1">
        <location>
            <begin position="25"/>
            <end position="129"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX36463.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="129" mass="13615" checksum="534FC8BD58196BFF" modified="2008-01-15" version="1">MKTFALTVASLAAAASLVSTSANAAASIFLNDTIAARIPARDLPDAKAAVAKVLNEAADGSVTEWTSGPNRTNQRVTMALQPQQTVQTGSAGSCRLLSADVRLKKTSENWRFWFCKQSDGSWKASGSQP</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="44" xmlns="http://uniprot.org/uniprot">
    <accession>A9BLK7</accession>
    <name>A9BLK7_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Daci_3861</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="2" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX36492.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012205686.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_3861"/>
    <dbReference type="PRIDE" id="A9BLK7"/>
    <dbReference type="EnsemblBacteria" id="ABX36492">
        <property type="protein sequence ID" value="ABX36492"/>
        <property type="gene ID" value="Daci_3861"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_3861"/>
    <dbReference type="eggNOG" id="ENOG5033IBX">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_1003715_0_0_4"/>
    <dbReference type="OMA" id="PNIAGAK"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ABX36492.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="277" mass="30201" checksum="EC13A23CACD26B11" modified="2008-01-15" version="1">MPTVQIKFPHNAPVPSTLTLVEGNRLRVKIEAVAKTYKLGARIDAPSILAAQPPVHNARADSWQFDFVAQQPGLTKLSIVAVQGTGLSVMPAAITVQVEKSISLPAESTTEGMLARLFLAESVSPGDTSLAWNLDNVKTGMQWMRRVIENRLKSGKPEDFMARGATSVEDIVMADDRGSVQFHGFNVYPKLGPDIAKNLRDYVDNANNGLHPKRKAYLDFVQAALDVATGAVPPDPTPTGLFAWRTAKSSSPGADFIQHAALARNMFYTHARLRKRD</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="85" xmlns="http://uniprot.org/uniprot">
    <accession>A9BLL0</accession>
    <name>A9BLL0_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="12">Type VI secretion ATPase, ClpV1 family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="12" type="ordered locus">Daci_3864</name>
    </gene>
    <organism evidence="12 13">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="12 13" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="13">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="13" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="13">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="7">Part of a stress-induced multi-chaperone system, it is involved in the recovery of the cell from heat-induced damage, in cooperation with DnaK, DnaJ and GrpE. Acts before DnaK, in the processing of protein aggregates. Protein binding stimulates the ATPase activity; ATP hydrolysis unfolds the denatured protein aggregates, which probably helps expose new hydrophobic binding sites on the surface of ClpB-bound aggregates, contributing to the solubilization and refolding of denatured protein aggregates by DnaK.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the ClpA/ClpB family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX36495.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_3864"/>
    <dbReference type="PRIDE" id="A9BLL0"/>
    <dbReference type="EnsemblBacteria" id="ABX36495">
        <property type="protein sequence ID" value="ABX36495"/>
        <property type="gene ID" value="Daci_3864"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_3864"/>
    <dbReference type="eggNOG" id="COG0542">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_005070_1_0_4"/>
    <dbReference type="OMA" id="PDMSREF"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016887">
        <property type="term" value="F:ATP hydrolysis activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.1780.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="3"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003593">
        <property type="entry name" value="AAA+_ATPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003959">
        <property type="entry name" value="ATPase_AAA_core"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017729">
        <property type="entry name" value="ATPase_T6SS_ClpV1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019489">
        <property type="entry name" value="Clp_ATPase_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036628">
        <property type="entry name" value="Clp_N_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004176">
        <property type="entry name" value="Clp_R_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001270">
        <property type="entry name" value="ClpA/B"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018368">
        <property type="entry name" value="ClpA/B_CS1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041546">
        <property type="entry name" value="ClpA/ClpB_AAA_lid"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00004">
        <property type="entry name" value="AAA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07724">
        <property type="entry name" value="AAA_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF17871">
        <property type="entry name" value="AAA_lid_9"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF10431">
        <property type="entry name" value="ClpB_D2-small"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00300">
        <property type="entry name" value="CLPPROTEASEA"/>
    </dbReference>
    <dbReference type="SMART" id="SM00382">
        <property type="entry name" value="AAA"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SMART" id="SM01086">
        <property type="entry name" value="ClpB_D2-small"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF81923">
        <property type="entry name" value="SSF81923"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR03345">
        <property type="entry name" value="VI_ClpV1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51903">
        <property type="entry name" value="CLP_R"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00870">
        <property type="entry name" value="CLPAB_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="6" id="KW-0143">Chaperone</keyword>
    <keyword evidence="9" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="4" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="13" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 8" id="KW-0677">Repeat</keyword>
    <feature type="domain" description="Clp R" evidence="11">
        <location>
            <begin position="25"/>
            <end position="166"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="10">
        <location>
            <begin position="176"/>
            <end position="203"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="10">
        <location>
            <begin position="537"/>
            <end position="562"/>
        </location>
    </feature>
    <feature type="coiled-coil region" evidence="9">
        <location>
            <begin position="457"/>
            <end position="508"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004496"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00008675"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022737"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023186"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00025613"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU01251"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="11">
        <source>
            <dbReference type="PROSITE" id="PS51903"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="EMBL" id="ABX36495.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="13">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="928" mass="100675" checksum="372ADCBA1D06080C" modified="2008-01-15" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="72" xmlns="http://uniprot.org/uniprot">
    <accession>A9BLZ6</accession>
    <name>A9BLZ6_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Transcriptional regulator, MerR family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ordered locus">Daci_4304</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="5" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX36935.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012206107.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_4304"/>
    <dbReference type="PRIDE" id="A9BLZ6"/>
    <dbReference type="EnsemblBacteria" id="ABX36935">
        <property type="protein sequence ID" value="ABX36935"/>
        <property type="gene ID" value="Daci_4304"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_4304"/>
    <dbReference type="eggNOG" id="COG0789">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_060077_2_3_4"/>
    <dbReference type="OMA" id="YRSYPEE"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006355">
        <property type="term" value="P:regulation of transcription, DNA-templated"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009061">
        <property type="entry name" value="DNA-bd_dom_put_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000551">
        <property type="entry name" value="MerR-type_HTH_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13411">
        <property type="entry name" value="MerR_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00040">
        <property type="entry name" value="HTHMERR"/>
    </dbReference>
    <dbReference type="SMART" id="SM00422">
        <property type="entry name" value="HTH_MERR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46955">
        <property type="entry name" value="SSF46955"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00552">
        <property type="entry name" value="HTH_MERR_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50937">
        <property type="entry name" value="HTH_MERR_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HTH merR-type" evidence="3">
        <location>
            <begin position="1"/>
            <end position="69"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="143"/>
            <end position="164"/>
        </location>
    </feature>
    <feature type="coiled-coil region" evidence="1">
        <location>
            <begin position="83"/>
            <end position="114"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="PROSITE" id="PS50937"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="ABX36935.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="164" mass="18144" checksum="DA170787FFCDF597" modified="2008-01-15" version="1">MNIGELSKRTGLSTSRIRFYEQSGLLQAAERGLNGYRSYPPEMVQMLELIAMAQGVGFSLDEIRALLPPGLQGWDHEAVVGALRQKIADIKAMEKKLQTSKKQLQALLTDIEARPDNMDCHDNARRVLSHVLAQQSESLASEAAAEEKMGKLMRTGHKKRASVA</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="86" xmlns="http://uniprot.org/uniprot">
    <accession>A9BM09</accession>
    <name>A9BM09_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Integration host factor, beta subunit</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Daci_4725</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="4" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="2">Belongs to the bacterial histone-like protein family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX37354.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012206524.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_4725"/>
    <dbReference type="PRIDE" id="A9BM09"/>
    <dbReference type="EnsemblBacteria" id="ABX37354">
        <property type="protein sequence ID" value="ABX37354"/>
        <property type="gene ID" value="Daci_4725"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_4725"/>
    <dbReference type="eggNOG" id="COG0776">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_105066_2_0_4"/>
    <dbReference type="OMA" id="RDRVNIY"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030527">
        <property type="term" value="F:structural constituent of chromatin"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="4.10.520.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000119">
        <property type="entry name" value="Hist_DNA-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010992">
        <property type="entry name" value="IHF-like_DNA-bd_dom_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33175">
        <property type="entry name" value="PTHR33175"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00216">
        <property type="entry name" value="Bac_DNA_binding"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR01727">
        <property type="entry name" value="DNABINDINGHU"/>
    </dbReference>
    <dbReference type="SMART" id="SM00411">
        <property type="entry name" value="BHL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47729">
        <property type="entry name" value="SSF47729"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="1" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="RuleBase" id="RU003939"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ABX37354.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="113" mass="12122" checksum="AB27C3ACDA389085" modified="2008-01-15" version="1">MTRSDLVEELAARFGQLSQRDAEQAVKTILDAVSDALVRGHRIEIRGFGSFSVNHRPPRMGRNPRSGEAVHIPSKRVPHFKPGKALREAVDLRPGVAIDTDNTGSGTGSGPAA</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="54" xmlns="http://uniprot.org/uniprot">
    <accession>A9BM21</accession>
    <name>A9BM21_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ordered locus">Daci_4737</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="6" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="1">Involved in DNA recombination.</text>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the RmuC family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX37366.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_4737"/>
    <dbReference type="PRIDE" id="A9BM21"/>
    <dbReference type="EnsemblBacteria" id="ABX37366">
        <property type="protein sequence ID" value="ABX37366"/>
        <property type="gene ID" value="Daci_4737"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_4737"/>
    <dbReference type="eggNOG" id="COG1322">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_020365_1_1_4"/>
    <dbReference type="OMA" id="GDSKMQG"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003798">
        <property type="entry name" value="DNA_recombination_RmuC"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30563">
        <property type="entry name" value="PTHR30563"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02646">
        <property type="entry name" value="RmuC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-0472">Membrane</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="4" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="4">
        <location>
            <begin position="6"/>
            <end position="27"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="3">
        <location>
            <begin position="474"/>
            <end position="509"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00003416"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00009840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="ABX37366.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="509" mass="55762" checksum="7F7B7546FE31F50E" modified="2008-01-15" version="1">MTQISGVWWAAWAVLLLGQAAVIWLLCRRSAQRDDGVAPQQLLQALQMLDVRLQQLERGAQATQMAVAKSDGGLDRVSQQLQAHLAQAQLDAQAARREQGEALAAFRMELGRLTVRLAADSAQAREAQGESTQRFNAHVQERFEALAQTTRSTLDSLKNDIQQQLGGLAQSSQVHAEQLRGTLNERLATIQSDNAARLEEMRRTVDEKLHATLEQRLGESFKLVSDRLEQVHKGLGEMQTLAGSVGDLKRVMTNVKTRGTWGELQLGAIIENVLTPEQYARNVKTVPGSDDMVEFAIRLPGRSDETPVWLPIDAKYPVEQYQRLLDAQDAADKAAIASAGNAFEASIKFEARKIHGKYVSPPHTTDFAVLYLPTEGLFAEVMRRPGLVEAVQNGCRVMVTGPANLAAMLSSLQMGFKTLAIEKRSSEVWAVLGQVKTEFAKFGEVVDATRKSIDAAAKRFEQVGVRTRAIQRQLRDVQELPAPASSAGLPGLPDDKDTAAGMEPGSEQD</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="82" xmlns="http://uniprot.org/uniprot">
    <accession>A9BM36</accession>
    <name>A9BM36_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="11">TonB-dependent siderophore receptor</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="11" type="ordered locus">Daci_4752</name>
    </gene>
    <organism evidence="11 12">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="11 12" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="12">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="12" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="12">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="8">Cell outer membrane</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="1 8">Belongs to the TonB-dependent receptor family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX37381.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012206551.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_4752"/>
    <dbReference type="PRIDE" id="A9BM36"/>
    <dbReference type="EnsemblBacteria" id="ABX37381">
        <property type="protein sequence ID" value="ABX37381"/>
        <property type="gene ID" value="Daci_4752"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_4752"/>
    <dbReference type="eggNOG" id="COG4773">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_008287_9_0_4"/>
    <dbReference type="OMA" id="QTGVYFQ"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009279">
        <property type="term" value="C:cell outer membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015344">
        <property type="term" value="F:siderophore uptake transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0038023">
        <property type="term" value="F:signaling receptor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.170.130.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.170.20">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012910">
        <property type="entry name" value="Plug_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037066">
        <property type="entry name" value="Plug_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011662">
        <property type="entry name" value="Secretin/TonB_short_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR039423">
        <property type="entry name" value="TonB-dep_rcpt"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000531">
        <property type="entry name" value="TonB-dep_rcpt_b-brl"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036942">
        <property type="entry name" value="TonB_rcpt_b-brl_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010105">
        <property type="entry name" value="TonB_sidphr_rcpt"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR32552">
        <property type="entry name" value="PTHR32552"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07715">
        <property type="entry name" value="Plug"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00593">
        <property type="entry name" value="TonB_dep_Rec"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00965">
        <property type="entry name" value="STN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01783">
        <property type="entry name" value="TonB-siderophor"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="7" id="KW-0998">Cell outer membrane</keyword>
    <keyword evidence="5 8" id="KW-0472">Membrane</keyword>
    <keyword evidence="6 11" id="KW-0675">Receptor</keyword>
    <keyword evidence="12" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 9" id="KW-0732">Signal</keyword>
    <keyword evidence="4 8" id="KW-0798">TonB box</keyword>
    <keyword evidence="2" id="KW-0813">Transport</keyword>
    <feature type="signal peptide" evidence="9">
        <location>
            <begin position="1"/>
            <end position="30"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5002732910" evidence="9">
        <location>
            <begin position="31"/>
            <end position="799"/>
        </location>
    </feature>
    <feature type="domain" description="STN" evidence="10">
        <location>
            <begin position="63"/>
            <end position="114"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00009810"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022448"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022729"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023077"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023170"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023237"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="RuleBase" id="RU003357"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="10">
        <source>
            <dbReference type="SMART" id="SM00965"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="EMBL" id="ABX37381.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="799" mass="87816" checksum="2ABB5C8A824D651A" modified="2008-01-15" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="95" xmlns="http://uniprot.org/uniprot">
    <accession>A9BMJ9</accession>
    <name>A9BMJ9_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="9">Phosphate ABC transporter, ATPase subunit</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="9" type="ordered locus">Daci_4915</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="9 10" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="10" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX37544.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012206714.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_4915"/>
    <dbReference type="PRIDE" id="A9BMJ9"/>
    <dbReference type="EnsemblBacteria" id="ABX37544">
        <property type="protein sequence ID" value="ABX37544"/>
        <property type="gene ID" value="Daci_4915"/>
    </dbReference>
    <dbReference type="GeneID" id="60689259"/>
    <dbReference type="KEGG" id="dac:Daci_4915"/>
    <dbReference type="eggNOG" id="COG1117">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_000604_1_22_4"/>
    <dbReference type="OMA" id="TIDICRV"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015415">
        <property type="term" value="F:ATPase-coupled phosphate ion transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005315">
        <property type="term" value="F:inorganic phosphate transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd03260">
        <property type="entry name" value="ABC_PstB_phosphate_transporter"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003593">
        <property type="entry name" value="AAA+_ATPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003439">
        <property type="entry name" value="ABC_transporter-like_ATP-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017871">
        <property type="entry name" value="ABC_transporter-like_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015850">
        <property type="entry name" value="ABC_transpr_PstB"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005670">
        <property type="entry name" value="Phosp_transpt1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43423">
        <property type="entry name" value="PTHR43423"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43423:SF3">
        <property type="entry name" value="PTHR43423:SF3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00005">
        <property type="entry name" value="ABC_tran"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00382">
        <property type="entry name" value="AAA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00972">
        <property type="entry name" value="3a0107s01c2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00211">
        <property type="entry name" value="ABC_TRANSPORTER_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50893">
        <property type="entry name" value="ABC_TRANSPORTER_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4 7" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="1" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="6" id="KW-0472">Membrane</keyword>
    <keyword evidence="3 7" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="2" id="KW-0592">Phosphate transport</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="5" id="KW-1278">Translocase</keyword>
    <keyword evidence="2" id="KW-0813">Transport</keyword>
    <feature type="domain" description="ABC transporter" evidence="8">
        <location>
            <begin position="14"/>
            <end position="255"/>
        </location>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <begin position="46"/>
            <end position="53"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022592"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022967"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00434"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="PROSITE" id="PS50893"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="ABX37544.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="260" mass="29095" checksum="DC3963A634BAE4A3" modified="2008-01-15" version="1">MTATSSTALNSSKLTVRDLNFYYGKFHALKGINLDIPEKKVTAFIGPSGCGKSTLLRTFNRMFELYPEQRAEGQIMLDGENLLTSKQDVALIRAKVGMVFQKPTPFPMSIYDNIAFGVKLFENLSSSDMDDRVEWALRKAALWGEVKDKLQQSGSGLSGGQQQRLCIARGIAIKPEVLLLDEPCSALDPISTAKIEELIAELKNDYTVVIVTHNMQQAARCSDYTAYMYLGDLVEFGDTEQMFFKPQRKETEDYITGRFG</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-01-19" version="48" xmlns="http://uniprot.org/uniprot">
    <accession>A9BML3</accession>
    <name>A9BML3_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="5">DUF4149 domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="6" type="ordered locus">Daci_4929</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="7" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX37558.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012206728.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_4929"/>
    <dbReference type="EnsemblBacteria" id="ABX37558">
        <property type="protein sequence ID" value="ABX37558"/>
        <property type="gene ID" value="Daci_4929"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_4929"/>
    <dbReference type="eggNOG" id="ENOG5032X11">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_136732_1_0_4"/>
    <dbReference type="OMA" id="WWGSLSA"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025423">
        <property type="entry name" value="DUF4149"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13664">
        <property type="entry name" value="DUF4149"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3 4" id="KW-0472">Membrane</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1 4" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="2 4" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="4">
        <location>
            <begin position="43"/>
            <end position="66"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="4">
        <location>
            <begin position="78"/>
            <end position="100"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="4">
        <location>
            <begin position="112"/>
            <end position="133"/>
        </location>
    </feature>
    <feature type="domain" description="DUF4149" evidence="5">
        <location>
            <begin position="11"/>
            <end position="106"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="Pfam" id="PF13664"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="ABX37558.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="147" mass="15962" checksum="5C74B95F557FE846" modified="2008-01-15" version="1">MSNLYERVPLLAAALWWGSLSAIGFMAVPMLFAQLPTPAVAGFMAAKLFAAQTWVSIACAAVLLVLSRRNKEQVLQPWAKACLGFVIAGMLLAFLVQYGVSPRIVARDNLKLWHSVGTVMYALQWLCALVVLWRIGSPSQAKAEATA</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="47" xmlns="http://uniprot.org/uniprot">
    <accession>A9BMN6</accession>
    <name>A9BMN6_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Daci_4952</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="4" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX37581.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_4952"/>
    <dbReference type="PRIDE" id="A9BMN6"/>
    <dbReference type="EnsemblBacteria" id="ABX37581">
        <property type="protein sequence ID" value="ABX37581"/>
        <property type="gene ID" value="Daci_4952"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_4952"/>
    <dbReference type="eggNOG" id="ENOG502ZA0V">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_316105_0_0_4"/>
    <dbReference type="OMA" id="WQRDAAK"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007139">
        <property type="entry name" value="DUF349"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03993">
        <property type="entry name" value="DUF349"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="1"/>
            <end position="42"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="272"/>
            <end position="304"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="646"/>
            <end position="737"/>
        </location>
    </feature>
    <feature type="coiled-coil region" evidence="1">
        <location>
            <begin position="137"/>
            <end position="207"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="2">
        <location>
            <begin position="1"/>
            <end position="16"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="2">
        <location>
            <begin position="681"/>
            <end position="737"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ABX37581.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="884" mass="95751" checksum="7F59D39949F423FD" modified="2008-01-15" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="54" xmlns="http://uniprot.org/uniprot">
    <accession>A9BMR4</accession>
    <name>A9BMR4_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ordered locus">Daci_4980</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="5" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Periplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the UPF0065 (bug) family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX37609.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012206779.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_4980"/>
    <dbReference type="PRIDE" id="A9BMR4"/>
    <dbReference type="EnsemblBacteria" id="ABX37609">
        <property type="protein sequence ID" value="ABX37609"/>
        <property type="gene ID" value="Daci_4980"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_4980"/>
    <dbReference type="eggNOG" id="COG3181">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_045683_0_0_4"/>
    <dbReference type="OMA" id="AWYGIYM"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0042597">
        <property type="term" value="C:periplasmic space"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.190.150">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005064">
        <property type="entry name" value="BUG"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR042100">
        <property type="entry name" value="Bug_dom1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR42928">
        <property type="entry name" value="PTHR42928"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03401">
        <property type="entry name" value="TctC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF017082">
        <property type="entry name" value="YflP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="3">
        <location>
            <begin position="1"/>
            <end position="20"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5002732334" evidence="3">
        <location>
            <begin position="21"/>
            <end position="321"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004418"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00006987"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="ABX37609.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="321" mass="34014" checksum="6134FFA90A6BC845" modified="2008-01-15" version="1">MQRRPLLLAAAALLPAIALAQTPPDWPTRPVRMLVGSAPGGGTDAMARAVADRLAPLLRQPVIVENRPGVSNTLAVDMTAKSTDGHTMVMGVVTAHAIAPHLLKLGYDSNRDLVPVAYVGAVPNVLVVGNNLPANSVQELVALARKEPGRINFASSGTGSTQHIAAEMFKDAAGIELTHVPYKGSAAALVDLVSGQVQMSFDTMPSVIGQIKAGKLRALGVTSPRRNAQLPQVPTLAEAGLPGVEIGAWYGIYMPAATPRAVQARVHDEVNKVLAMPETRTRLEAVGAELQPMGQAEFIALHNAEYQRFGEIIRKNHIKID</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="89" xmlns="http://uniprot.org/uniprot">
    <accession>A9BMT4</accession>
    <name>A9BMT4_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">Histidine kinase</fullName>
            <ecNumber evidence="2">2.7.13.3</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="6" type="ordered locus">Daci_5000</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="7" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>ATP + protein L-histidine = ADP + protein N-phospho-L-histidine.</text>
            <dbReference type="EC" id="2.7.13.3"/>
        </reaction>
    </comment>
    <dbReference type="EC" id="2.7.13.3" evidence="2"/>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX37629.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012206799.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_5000"/>
    <dbReference type="PRIDE" id="A9BMT4"/>
    <dbReference type="EnsemblBacteria" id="ABX37629">
        <property type="protein sequence ID" value="ABX37629"/>
        <property type="gene ID" value="Daci_5000"/>
    </dbReference>
    <dbReference type="GeneID" id="60689348"/>
    <dbReference type="KEGG" id="dac:Daci_5000"/>
    <dbReference type="eggNOG" id="COG3852">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_000445_114_39_4"/>
    <dbReference type="OMA" id="EIMLTTA"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000155">
        <property type="term" value="F:phosphorelay sensor kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd00082">
        <property type="entry name" value="HisKA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="CDD" id="cd00130">
        <property type="entry name" value="PAS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.565.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003594">
        <property type="entry name" value="HATPase_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036890">
        <property type="entry name" value="HATPase_C_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005467">
        <property type="entry name" value="His_kinase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003661">
        <property type="entry name" value="HisK_dim/P"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036097">
        <property type="entry name" value="HisK_dim/P_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000014">
        <property type="entry name" value="PAS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035965">
        <property type="entry name" value="PAS-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004358">
        <property type="entry name" value="Sig_transdc_His_kin-like_C"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02518">
        <property type="entry name" value="HATPase_c"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00512">
        <property type="entry name" value="HisKA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00344">
        <property type="entry name" value="BCTRLSENSOR"/>
    </dbReference>
    <dbReference type="SMART" id="SM00387">
        <property type="entry name" value="HATPase_c"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00388">
        <property type="entry name" value="HisKA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47384">
        <property type="entry name" value="SSF47384"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55785">
        <property type="entry name" value="SSF55785"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55874">
        <property type="entry name" value="SSF55874"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50109">
        <property type="entry name" value="HIS_KIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50112">
        <property type="entry name" value="PAS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="6" id="KW-0418">Kinase</keyword>
    <keyword evidence="3" id="KW-0597">Phosphoprotein</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="6" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="PAS" evidence="5">
        <location>
            <begin position="14"/>
            <end position="62"/>
        </location>
    </feature>
    <feature type="domain" description="Histidine kinase" evidence="4">
        <location>
            <begin position="141"/>
            <end position="358"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00000085"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00012438"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022553"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="PROSITE" id="PS50109"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="PROSITE" id="PS50112"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="ABX37629.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="358" mass="39729" checksum="9DF294D2DDD61DE4" modified="2008-01-15" version="1">MIQDDRPAPPASYQALDLLCTLMTVLDEQGAVLFANAALENALGLSRRMLEGSELAACFTEPALLDKALRGAQDNDFAALRFEASLHRVGGDALPVHVTVSLAERPGHVLVEFWPLEQQARQDREERLREQAQAHKELIRNLAHEIKNPLGGIRGAAQLLQMDLDAPELREYTEVIIHEADRLQALVDRLLAPHRHPHEVGDVNIHEVCERVRSLVLVEHPAGLTITRDYDISIPEFRGDSAQLIQAVLNIVQNAAQALQERIAAGDAEIILRTRVARQVTFGRQRYRLALELHVIDNGPGVPDAIKERIFYPLVSGRDGGSGLGLTLAQTFVQRHQGLIECESQPGRTDFRILIPLP</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="71" xmlns="http://uniprot.org/uniprot">
    <accession>A9BMY0</accession>
    <name>A9BMY0_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Adenylate cyclase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Daci_5046</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="4" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX37675.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012206845.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_5046"/>
    <dbReference type="PRIDE" id="A9BMY0"/>
    <dbReference type="EnsemblBacteria" id="ABX37675">
        <property type="protein sequence ID" value="ABX37675"/>
        <property type="gene ID" value="Daci_5046"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_5046"/>
    <dbReference type="eggNOG" id="COG2954">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_109545_1_0_4"/>
    <dbReference type="OMA" id="WEVDEFF"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR033469">
        <property type="entry name" value="CYTH-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023577">
        <property type="entry name" value="CYTH_domain"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012042">
        <property type="entry name" value="NeuTTM/CthTTM-like"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR40114">
        <property type="entry name" value="PTHR40114"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01928">
        <property type="entry name" value="CYTH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF016487">
        <property type="entry name" value="CYTH_UCP016487"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM01118">
        <property type="entry name" value="CYTH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55154">
        <property type="entry name" value="SSF55154"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51707">
        <property type="entry name" value="CYTH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="CYTH" evidence="2">
        <location>
            <begin position="2"/>
            <end position="147"/>
        </location>
    </feature>
    <feature type="active site" description="Proton acceptor" evidence="1">
        <location>
            <position position="29"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="PIRSR" id="PIRSR016487-1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS51707"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ABX37675.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="159" mass="17154" checksum="040DF1A421533713" modified="2008-01-15" version="1">MALEIERKYLVADPGIVAGLTGVRMAQGYIADNGMWVRVRIAGDTGFLTLKGPARGMSRAEFEYRIPLADAETLLAQHCAHGAIDKVRYIVPVDGFDFEVDVFEGPLAGLVTAEIELASEDIQPPSPAWLGAEVTTDLRYSNSQLAKTRQLPSPAVLPG</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="59" xmlns="http://uniprot.org/uniprot">
    <accession>A9BN66</accession>
    <name>A9BN66_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ordered locus">Daci_5132</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="5" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Periplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the UPF0065 (bug) family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX37761.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012206931.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_5132"/>
    <dbReference type="PRIDE" id="A9BN66"/>
    <dbReference type="EnsemblBacteria" id="ABX37761">
        <property type="protein sequence ID" value="ABX37761"/>
        <property type="gene ID" value="Daci_5132"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_5132"/>
    <dbReference type="eggNOG" id="COG3181">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_045683_0_0_4"/>
    <dbReference type="OMA" id="APTDGYT"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0042597">
        <property type="term" value="C:periplasmic space"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.190.150">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005064">
        <property type="entry name" value="BUG"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR042100">
        <property type="entry name" value="Bug_dom1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006311">
        <property type="entry name" value="TAT_signal"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR42928">
        <property type="entry name" value="PTHR42928"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03401">
        <property type="entry name" value="TctC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF017082">
        <property type="entry name" value="YflP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51318">
        <property type="entry name" value="TAT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="3">
        <location>
            <begin position="1"/>
            <end position="34"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5002734911" evidence="3">
        <location>
            <begin position="35"/>
            <end position="334"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004418"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00006987"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="ABX37761.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="334" mass="34490" checksum="2C41A5AA92467943" modified="2008-01-15" version="1">MRTASPLSSEARQVLSRRSLLGAAALGLALPAAAQGSFPAKPLKLVVGYPAGGSVDLAARVVGDALAARLHGTVVVDNVGGAAGAIAAQRVASAPADGYTLLVGASNELVATRIVNPAQRYDGRRDFTPLGLVATSPLILAARPGLGMKTLADLLELARRQPGKLSYGSSGVGSTLHFAGELFKQRAGVSITHVPYRGVAPLTSDLAGGSLDLAMLSPTAAQPFLQSGRIVPLAVTSAQRLSALPQVPAMAELAPLRGYELVGWFALMAPRGLPAATAQRITAALQEALAEPAVRKRLEDAGMVPASGREDLARLIAEEDRKYDQLAAFANMRD</sequence>
</entry>
<entry dataset="Swiss-Prot" created="2009-04-14" modified="2022-08-03" version="86" xmlns="http://uniprot.org/uniprot">
    <accession>A9BNG6</accession>
    <name>DNAJ_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Chaperone protein DnaJ</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="1" type="primary">dnaJ</name>
        <name type="ordered locus">Daci_5232</name>
    </gene>
    <organism>
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference key="1">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain>DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="1">Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, DnaK-independent fashion. Unfolded proteins bind initially to DnaJ; upon interaction with the DnaJ-bound protein, DnaK hydrolyzes its bound ATP, resulting in the formation of a stable complex. GrpE releases ADP from DnaK; ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions between DnaJ, DnaK and GrpE are required for fully efficient folding. Also involved, together with DnaK and GrpE, in the DNA replication of plasmids through activation of initiation proteins.</text>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </cofactor>
        <text evidence="1">Binds 2 Zn(2+) ions per monomer.</text>
    </comment>
    <comment type="subunit">
        <text evidence="1">Homodimer.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="domain">
        <text evidence="1">The J domain is necessary and sufficient to stimulate DnaK ATPase activity. Zinc center 1 plays an important role in the autonomous, DnaK-independent chaperone activity of DnaJ. Zinc center 2 is essential for interaction with DnaK and for DnaJ activity.</text>
    </comment>
    <comment type="similarity">
        <text evidence="1">Belongs to the DnaJ family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX37861.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012207031.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A9BNG6"/>
    <dbReference type="SMR" id="A9BNG6"/>
    <dbReference type="STRING" id="398578.Daci_5232"/>
    <dbReference type="PRIDE" id="A9BNG6"/>
    <dbReference type="EnsemblBacteria" id="ABX37861">
        <property type="protein sequence ID" value="ABX37861"/>
        <property type="gene ID" value="Daci_5232"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_5232"/>
    <dbReference type="eggNOG" id="COG0484">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_017633_0_7_4"/>
    <dbReference type="OMA" id="DLHCTVT"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0031072">
        <property type="term" value="F:heat shock protein binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051082">
        <property type="term" value="F:unfolded protein binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008270">
        <property type="term" value="F:zinc ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006260">
        <property type="term" value="P:DNA replication"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006457">
        <property type="term" value="P:protein folding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009408">
        <property type="term" value="P:response to heat"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd06257">
        <property type="entry name" value="DnaJ"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="CDD" id="cd10719">
        <property type="entry name" value="DnaJ_zf"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.287.110">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01152">
        <property type="entry name" value="DnaJ"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012724">
        <property type="entry name" value="DnaJ"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002939">
        <property type="entry name" value="DnaJ_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001623">
        <property type="entry name" value="DnaJ_domain"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018253">
        <property type="entry name" value="DnaJ_domain_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008971">
        <property type="entry name" value="HSP40/DnaJ_pept-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001305">
        <property type="entry name" value="HSP_DnaJ_Cys-rich_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036410">
        <property type="entry name" value="HSP_DnaJ_Cys-rich_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036869">
        <property type="entry name" value="J_dom_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00226">
        <property type="entry name" value="DnaJ"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01556">
        <property type="entry name" value="DnaJ_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00684">
        <property type="entry name" value="DnaJ_CXXCXGXG"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00625">
        <property type="entry name" value="JDOMAIN"/>
    </dbReference>
    <dbReference type="SMART" id="SM00271">
        <property type="entry name" value="DnaJ"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46565">
        <property type="entry name" value="SSF46565"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF49493">
        <property type="entry name" value="SSF49493"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF57938">
        <property type="entry name" value="SSF57938"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR02349">
        <property type="entry name" value="DnaJ_bact"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00636">
        <property type="entry name" value="DNAJ_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50076">
        <property type="entry name" value="DNAJ_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51188">
        <property type="entry name" value="ZF_CR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword id="KW-0143">Chaperone</keyword>
    <keyword id="KW-0963">Cytoplasm</keyword>
    <keyword id="KW-0235">DNA replication</keyword>
    <keyword id="KW-0479">Metal-binding</keyword>
    <keyword id="KW-1185">Reference proteome</keyword>
    <keyword id="KW-0677">Repeat</keyword>
    <keyword id="KW-0346">Stress response</keyword>
    <keyword id="KW-0862">Zinc</keyword>
    <keyword id="KW-0863">Zinc-finger</keyword>
    <feature type="chain" id="PRO_1000137678" description="Chaperone protein DnaJ">
        <location>
            <begin position="1"/>
            <end position="380"/>
        </location>
    </feature>
    <feature type="domain" description="J" evidence="1">
        <location>
            <begin position="5"/>
            <end position="72"/>
        </location>
    </feature>
    <feature type="repeat" description="CXXCXGXG motif">
        <location>
            <begin position="153"/>
            <end position="160"/>
        </location>
    </feature>
    <feature type="repeat" description="CXXCXGXG motif">
        <location>
            <begin position="170"/>
            <end position="177"/>
        </location>
    </feature>
    <feature type="repeat" description="CXXCXGXG motif">
        <location>
            <begin position="192"/>
            <end position="199"/>
        </location>
    </feature>
    <feature type="repeat" description="CXXCXGXG motif">
        <location>
            <begin position="206"/>
            <end position="213"/>
        </location>
    </feature>
    <feature type="zinc finger region" description="CR-type" evidence="1">
        <location>
            <begin position="140"/>
            <end position="218"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="359"/>
            <end position="380"/>
        </location>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <position position="153"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
            <label>1</label>
        </ligand>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <position position="156"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
            <label>1</label>
        </ligand>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <position position="170"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
            <label>2</label>
        </ligand>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <position position="173"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
            <label>2</label>
        </ligand>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <position position="192"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
            <label>2</label>
        </ligand>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <position position="195"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
            <label>2</label>
        </ligand>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <position position="206"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
            <label>1</label>
        </ligand>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <position position="209"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
            <label>1</label>
        </ligand>
    </feature>
    <evidence type="ECO:0000255" key="1">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01152"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <sequence length="380" mass="40995" checksum="F242C01FB6C9F4D7" modified="2008-01-15" version="1">MSKRDFYEVLGVAKNASDDDIKKAYRKLAMKYHPDRNQGDAAREAEEKFKEAKEAYEMLSDSNKRAAYDQYGHAGVDPNRGMGGGAEGFGGFAEAFGDIFGDMFNQGGGRRGGAGGGRQVYRGNDLSYAMEITLEEAAHGKDAQIRIPSWDGCDTCHGSGAKPGTSAKTCTTCNGMGSVQMRQGFFSVQQTCPHCRGTGKIIPEPCTSCGGQGKVKRQKTLEVKIPAGIDDGMRIRSSGNGEPGTNGGPAGDLYIEIRIKDHDIFERDGDDLHCNVPVSFITAALGGEIEVPTLSGKAAIDIPEGTQAGKQFRLRGKGIKGVRSSYPGDLYCHIVVETPVKLTEYQRKLLRELEESLKKGGAKHSPSGESWTDRLKSFFS</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="91" xmlns="http://uniprot.org/uniprot">
    <accession>A9BNM7</accession>
    <name>A9BNM7_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">2-isopropylmalate synthase</fullName>
            <ecNumber evidence="3">2.3.3.13</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="3">Alpha-IPM synthase</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="3">Alpha-isopropylmalate synthase</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="3" type="primary">leuA</name>
        <name evidence="5" type="ordered locus">Daci_5293</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="6" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="3">Catalyzes the condensation of the acetyl group of acetyl-CoA with 3-methyl-2-oxobutanoate (2-oxoisovalerate) to form 3-carboxy-3-hydroxy-4-methylpentanoate (2-isopropylmalate).</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="3">
            <text>3-methyl-2-oxobutanoate + acetyl-CoA + H2O = (2S)-2-isopropylmalate + CoA + H(+)</text>
            <dbReference type="Rhea" id="RHEA:21524"/>
            <dbReference type="ChEBI" id="CHEBI:1178"/>
            <dbReference type="ChEBI" id="CHEBI:11851"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:57287"/>
            <dbReference type="ChEBI" id="CHEBI:57288"/>
            <dbReference type="EC" id="2.3.3.13"/>
        </reaction>
    </comment>
    <comment type="pathway">
        <text evidence="3">Amino-acid biosynthesis; L-leucine biosynthesis; L-leucine from 3-methyl-2-oxobutanoate: step 1/4.</text>
    </comment>
    <comment type="subunit">
        <text evidence="3">Homotetramer.</text>
    </comment>
    <comment type="similarity">
        <text evidence="3">Belongs to the alpha-IPM synthase/homocitrate synthase family. LeuA type 2 subfamily.</text>
    </comment>
    <dbReference type="EC" id="2.3.3.13" evidence="3"/>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX37922.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012207091.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_5293"/>
    <dbReference type="PRIDE" id="A9BNM7"/>
    <dbReference type="EnsemblBacteria" id="ABX37922">
        <property type="protein sequence ID" value="ABX37922"/>
        <property type="gene ID" value="Daci_5293"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_5293"/>
    <dbReference type="eggNOG" id="COG0119">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_004588_3_0_4"/>
    <dbReference type="OMA" id="FGQGERT"/>
    <dbReference type="UniPathway" id="UPA00048">
        <property type="reaction ID" value="UER00070"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003852">
        <property type="term" value="F:2-isopropylmalate synthase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009098">
        <property type="term" value="P:leucine biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd07942">
        <property type="entry name" value="DRE_TIM_LeuA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.20.20.70">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.160.270">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00572">
        <property type="entry name" value="LeuA_type2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013709">
        <property type="entry name" value="2-isopropylmalate_synth_dimer"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002034">
        <property type="entry name" value="AIPM/Hcit_synth_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013785">
        <property type="entry name" value="Aldolase_TIM"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005668">
        <property type="entry name" value="IPM_Synthase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036230">
        <property type="entry name" value="LeuA_allosteric_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR039371">
        <property type="entry name" value="LeuA_N_DRE-TIM"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000891">
        <property type="entry name" value="PYR_CT"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00682">
        <property type="entry name" value="HMGL-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08502">
        <property type="entry name" value="LeuA_dimer"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00917">
        <property type="entry name" value="LeuA_dimer"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF110921">
        <property type="entry name" value="SSF110921"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00815">
        <property type="entry name" value="AIPM_HOMOCIT_SYNTH_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00816">
        <property type="entry name" value="AIPM_HOMOCIT_SYNTH_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50991">
        <property type="entry name" value="PYR_CT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-0012">Acyltransferase</keyword>
    <keyword evidence="3" id="KW-0028">Amino-acid biosynthesis</keyword>
    <keyword evidence="2 3" id="KW-0100">Branched-chain amino acid biosynthesis</keyword>
    <keyword evidence="3" id="KW-0432">Leucine biosynthesis</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1 3 5" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Pyruvate carboxyltransferase" evidence="4">
        <location>
            <begin position="31"/>
            <end position="305"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023304"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00572"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="PROSITE" id="PS50991"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="ABX37922.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="566" mass="62054" checksum="1961814265BEE672" modified="2008-01-15" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="60" xmlns="http://uniprot.org/uniprot">
    <accession>A9BNP6</accession>
    <name>A9BNP6_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Alpha-2-macroglobulin domain protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ordered locus">Daci_5312</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="6" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the protease inhibitor I39 (alpha-2-macroglobulin) family. Bacterial alpha-2-macroglobulin subfamily.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX37941.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_5312"/>
    <dbReference type="PRIDE" id="A9BNP6"/>
    <dbReference type="EnsemblBacteria" id="ABX37941">
        <property type="protein sequence ID" value="ABX37941"/>
        <property type="gene ID" value="Daci_5312"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_5312"/>
    <dbReference type="eggNOG" id="COG2373">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_233129_0_0_4"/>
    <dbReference type="OMA" id="DMTWVVV"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004866">
        <property type="term" value="F:endopeptidase inhibitor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011625">
        <property type="entry name" value="A2M_N_BRD"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR021868">
        <property type="entry name" value="Alpha_2_Macroglob_MG3"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041246">
        <property type="entry name" value="Bact_MG10"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001599">
        <property type="entry name" value="Macroglobln_a2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002890">
        <property type="entry name" value="MG2"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00207">
        <property type="entry name" value="A2M"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07703">
        <property type="entry name" value="A2M_BRD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF17973">
        <property type="entry name" value="bMG10"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF11974">
        <property type="entry name" value="bMG3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01835">
        <property type="entry name" value="MG2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM01360">
        <property type="entry name" value="A2M"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM01359">
        <property type="entry name" value="A2M_N_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="A2M_N_2" evidence="3">
        <location>
            <begin position="1034"/>
            <end position="1217"/>
        </location>
    </feature>
    <feature type="domain" description="A2M" evidence="4">
        <location>
            <begin position="1275"/>
            <end position="1365"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="820"/>
            <end position="843"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="2">
        <location>
            <begin position="820"/>
            <end position="836"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00010556"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="SMART" id="SM01359"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="SMART" id="SM01360"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="ABX37941.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="1994" mass="216757" checksum="3CD3AA3D6DF3427B" modified="2008-01-15" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="50" xmlns="http://uniprot.org/uniprot">
    <accession>A9BNP7</accession>
    <name>A9BNP7_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_5313</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX37942.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012207111.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_5313"/>
    <dbReference type="PRIDE" id="A9BNP7"/>
    <dbReference type="EnsemblBacteria" id="ABX37942">
        <property type="protein sequence ID" value="ABX37942"/>
        <property type="gene ID" value="Daci_5313"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_5313"/>
    <dbReference type="eggNOG" id="COG1729">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_037855_1_0_4"/>
    <dbReference type="OMA" id="GYVMYQH"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.25.40.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011990">
        <property type="entry name" value="TPR-like_helical_dom_sf"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="44"/>
            <end position="65"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="101"/>
            <end position="120"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="126"/>
            <end position="155"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="167"/>
            <end position="189"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="195"/>
            <end position="219"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX37942.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="441" mass="48473" checksum="8636498F68E24E2C" modified="2008-01-15" version="1">MKPNHVAVPQPFWHRINQFFAFPLQSQPLGYALLLSLGSLLFKALFFLPAPLAIGLVQIGILLAASRYGFKVAALGSQGISRAADYPRHLDPDWTHLPWKLFAILVVHGIIVGWCARVSLGMAQLALLLLSFLLPASIIVLVQTTGFFSALNPLLILDTVRIIGKPYALLCFFLFLLSSGAQIAMSLLLPLFSGLILLPLFNFAMIYFGWVMASLLGYVMYQHHEALGIDAAPQADNGPDGAPARTPEQIARQQLDEDVAEHVAAGDLAAALGLAYEDQRTHPDDTHAQRRYHRLLLLSDKTATLLDHGRRFIALLLRQGQTAEALKVFQACRAKEASFALDDADQTLALARSTWRAGDAQATLTLISGFDKRFKGHAAVPHAYELAARLMLQGFGRRDMAQGILATLQARHPDSEATQEVRWLLRDPEPEQGPDPRPAPH</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="107" xmlns="http://uniprot.org/uniprot">
    <accession>A9BNW8</accession>
    <name>A9BNW8_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="10">Isoleucine--tRNA ligase</fullName>
            <ecNumber evidence="10">6.1.1.5</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="10">Isoleucyl-tRNA synthetase</fullName>
            <shortName evidence="10">IleRS</shortName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="10" type="primary">ileS</name>
        <name evidence="16" type="ordered locus">Daci_5384</name>
    </gene>
    <organism evidence="16 17">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="16 17" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="17">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="17" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="17">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="9 10">Catalyzes the attachment of isoleucine to tRNA(Ile). As IleRS can inadvertently accommodate and process structurally similar amino acids such as valine, to avoid such errors it has two additional distinct tRNA(Ile)-dependent editing activities. One activity is designated as 'pretransfer' editing and involves the hydrolysis of activated Val-AMP. The other activity is designated 'posttransfer' editing and involves deacylation of mischarged Val-tRNA(Ile).</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1 10">
            <text>ATP + L-isoleucine + tRNA(Ile) = AMP + diphosphate + L-isoleucyl-tRNA(Ile)</text>
            <dbReference type="Rhea" id="RHEA:11060"/>
            <dbReference type="Rhea" id="RHEA-COMP:9666"/>
            <dbReference type="Rhea" id="RHEA-COMP:9695"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:33019"/>
            <dbReference type="ChEBI" id="CHEBI:58045"/>
            <dbReference type="ChEBI" id="CHEBI:78442"/>
            <dbReference type="ChEBI" id="CHEBI:78528"/>
            <dbReference type="ChEBI" id="CHEBI:456215"/>
            <dbReference type="EC" id="6.1.1.5"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="10">
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </cofactor>
        <text evidence="10">Binds 1 zinc ion per subunit.</text>
    </comment>
    <comment type="subunit">
        <text evidence="10">Monomer.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="10">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="domain">
        <text evidence="10">IleRS has two distinct active sites: one for aminoacylation and one for editing. The misactivated valine is translocated from the active site to the editing site, which sterically excludes the correctly activated isoleucine. The single editing site contains two valyl binding pockets, one specific for each substrate (Val-AMP or Val-tRNA(Ile)).</text>
    </comment>
    <comment type="similarity">
        <text evidence="2 10">Belongs to the class-I aminoacyl-tRNA synthetase family. IleS type 1 subfamily.</text>
    </comment>
    <dbReference type="EC" id="6.1.1.5" evidence="10"/>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX38013.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012207182.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_5384"/>
    <dbReference type="PRIDE" id="A9BNW8"/>
    <dbReference type="EnsemblBacteria" id="ABX38013">
        <property type="protein sequence ID" value="ABX38013"/>
        <property type="gene ID" value="Daci_5384"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_5384"/>
    <dbReference type="eggNOG" id="COG0060">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_001493_7_1_4"/>
    <dbReference type="OMA" id="HLGTAWN"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0002161">
        <property type="term" value="F:aminoacyl-tRNA editing activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004822">
        <property type="term" value="F:isoleucine-tRNA ligase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000049">
        <property type="term" value="F:tRNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008270">
        <property type="term" value="F:zinc ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006428">
        <property type="term" value="P:isoleucyl-tRNA aminoacylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd07960">
        <property type="entry name" value="Anticodon_Ia_Ile_BEm"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.620">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.740.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_02002">
        <property type="entry name" value="Ile_tRNA_synth_type1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001412">
        <property type="entry name" value="aa-tRNA-synth_I_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002300">
        <property type="entry name" value="aa-tRNA-synth_Ia"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR033708">
        <property type="entry name" value="Anticodon_Ile_BEm"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002301">
        <property type="entry name" value="Ile-tRNA-ligase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023585">
        <property type="entry name" value="Ile-tRNA-ligase_type1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013155">
        <property type="entry name" value="M/V/L/I-tRNA-synth_anticd-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014729">
        <property type="entry name" value="Rossmann-like_a/b/a_fold"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009080">
        <property type="entry name" value="tRNAsynth_Ia_anticodon-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009008">
        <property type="entry name" value="Val/Leu/Ile-tRNA-synth_edit"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010663">
        <property type="entry name" value="Znf_FPG/IleRS"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08264">
        <property type="entry name" value="Anticodon_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00133">
        <property type="entry name" value="tRNA-synt_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF06827">
        <property type="entry name" value="zf-FPG_IleRS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00984">
        <property type="entry name" value="TRNASYNTHILE"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47323">
        <property type="entry name" value="SSF47323"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50677">
        <property type="entry name" value="SSF50677"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00392">
        <property type="entry name" value="ileS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00178">
        <property type="entry name" value="AA_TRNA_LIGASE_I"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="8 10 11" id="KW-0030">Aminoacyl-tRNA synthetase</keyword>
    <keyword evidence="6 10 11" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="3 10" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="4 10 11" id="KW-0436">Ligase</keyword>
    <keyword evidence="10" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="5 10 11" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="7 10 11" id="KW-0648">Protein biosynthesis</keyword>
    <keyword evidence="17" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="10" id="KW-0862">Zinc</keyword>
    <feature type="domain" description="tRNA-synt_1" evidence="13">
        <location>
            <begin position="38"/>
            <end position="672"/>
        </location>
    </feature>
    <feature type="domain" description="Anticodon_1" evidence="15">
        <location>
            <begin position="717"/>
            <end position="866"/>
        </location>
    </feature>
    <feature type="domain" description="zf-FPG_IleRS" evidence="14">
        <location>
            <begin position="913"/>
            <end position="938"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="12">
        <location>
            <begin position="1"/>
            <end position="28"/>
        </location>
    </feature>
    <feature type="short sequence motif" description="'HIGH' region" evidence="10">
        <location>
            <begin position="68"/>
            <end position="78"/>
        </location>
    </feature>
    <feature type="short sequence motif" description="'KMSKS' region" evidence="10">
        <location>
            <begin position="634"/>
            <end position="638"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="12">
        <location>
            <begin position="1"/>
            <end position="16"/>
        </location>
    </feature>
    <feature type="binding site" evidence="10">
        <location>
            <position position="593"/>
        </location>
        <ligand>
            <name>L-isoleucyl-5'-AMP</name>
            <dbReference type="ChEBI" id="CHEBI:178002"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="10">
        <location>
            <position position="637"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="10">
        <location>
            <position position="914"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="10">
        <location>
            <position position="917"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="10">
        <location>
            <position position="934"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="10">
        <location>
            <position position="937"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00000114"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00006887"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022490"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022598"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022917"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00023146"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00025217"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_02002"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="RuleBase" id="RU363035"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="12">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="13">
        <source>
            <dbReference type="Pfam" id="PF00133"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="14">
        <source>
            <dbReference type="Pfam" id="PF06827"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="15">
        <source>
            <dbReference type="Pfam" id="PF08264"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="16">
        <source>
            <dbReference type="EMBL" id="ABX38013.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="17">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="951" mass="106187" checksum="CD7515A4C7ACED5A" modified="2008-01-15" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="78" xmlns="http://uniprot.org/uniprot">
    <accession>A9BPD8</accession>
    <name>A9BPD8_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Transcriptional regulator, AraC family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_0159</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX32805.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012202098.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_0159"/>
    <dbReference type="PRIDE" id="A9BPD8"/>
    <dbReference type="EnsemblBacteria" id="ABX32805">
        <property type="protein sequence ID" value="ABX32805"/>
        <property type="gene ID" value="Daci_0159"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_0159"/>
    <dbReference type="eggNOG" id="COG2207">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_000445_87_0_4"/>
    <dbReference type="OMA" id="GMSERSM"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003700">
        <property type="term" value="F:DNA-binding transcription factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043565">
        <property type="term" value="F:sequence-specific DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009057">
        <property type="entry name" value="Homeobox-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018060">
        <property type="entry name" value="HTH_AraC"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011051">
        <property type="entry name" value="RmlC_Cupin_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12833">
        <property type="entry name" value="HTH_18"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00342">
        <property type="entry name" value="HTH_ARAC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46689">
        <property type="entry name" value="SSF46689"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51182">
        <property type="entry name" value="SSF51182"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01124">
        <property type="entry name" value="HTH_ARAC_FAMILY_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HTH araC/xylS-type" evidence="1">
        <location>
            <begin position="168"/>
            <end position="265"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS01124"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX32805.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="277" mass="30077" checksum="F9A3B48F1808C6E8" modified="2008-01-15" version="1">MNAVDSALLKVLPERWDPDHVDRPVIVLPMRSGPGDWGMNFHAHRKSQLMVTHAGLITLETDAGVCVVPPRSAAWIPGGTLHRVSCSGAASGYVVFVEAGAVRPVPGPCHALAVSPFLSALLDRVQGLPQDYEPDSGDGRLMQVLLDEIQAAQPEGLHLPLPHDRRLRRMTNALCEQPQLQARLADWAQRIGMSERSMTRLFLAETGLTVNQWRRQLHVLTALQKLSEGLRIQTVADALGYESAPAFVTMFRKAVGTSPRRFLALRSAPVAGGGAGL</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="78" xmlns="http://uniprot.org/uniprot">
    <accession>A9BPG7</accession>
    <name>A9BPG7_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Transcriptional regulator, LysR family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ordered locus">Daci_0188</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="5" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the LysR transcriptional regulatory family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX32834.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_0188"/>
    <dbReference type="PRIDE" id="A9BPG7"/>
    <dbReference type="EnsemblBacteria" id="ABX32834">
        <property type="protein sequence ID" value="ABX32834"/>
        <property type="gene ID" value="Daci_0188"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_0188"/>
    <dbReference type="eggNOG" id="COG0583">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_039613_16_2_4"/>
    <dbReference type="OMA" id="VWTARNE"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003700">
        <property type="term" value="F:DNA-binding transcription factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005119">
        <property type="entry name" value="LysR_subst-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000847">
        <property type="entry name" value="Tscrpt_reg_HTH_LysR"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036390">
        <property type="entry name" value="WH_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00126">
        <property type="entry name" value="HTH_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03466">
        <property type="entry name" value="LysR_substrate"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46785">
        <property type="entry name" value="SSF46785"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50931">
        <property type="entry name" value="HTH_LYSR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HTH lysR-type" evidence="3">
        <location>
            <begin position="35"/>
            <end position="92"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="1"/>
            <end position="32"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00009437"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="PROSITE" id="PS50931"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="ABX32834.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="354" mass="38438" checksum="E12236E5893B1A13" modified="2008-01-15" version="1">MLGRQGRRHNPRQQARPGDSRSTMAGPGPAKNAEMDLNLCRVFIDIAEAKSLTRAAERGGMTRSNVSRRLRALETEMGAQLLRRTTRNVELTQAGQLLYRRCLAMMEELQRARDAIHQLRSTVSGEVGVRVPTGFGHFYLKPLILGFCREHPDIRLRLLINDQMADLVASKVDLAVQITSAPLDDLVATRLCDVRWNFVATPACLQALEQSLGRPLRAPADLLQARLILPLAMGGRLAWLTGSGDDGVSAALDVLPSLQSGDYRLLYDAVLDGLGLALLPDYVTSAALAGGTLVAVLDQVVFSGLGNAMYLVRMPDRQPTMAARAFQQFLREAIVTAAPSWQAGAEEAGADLSS</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="79" xmlns="http://uniprot.org/uniprot">
    <accession>A9BPL5</accession>
    <name>A9BPL5_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Transcriptional regulator, GntR family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ordered locus">Daci_0236</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="6" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX32882.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012202175.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_0236"/>
    <dbReference type="PRIDE" id="A9BPL5"/>
    <dbReference type="EnsemblBacteria" id="ABX32882">
        <property type="protein sequence ID" value="ABX32882"/>
        <property type="gene ID" value="Daci_0236"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_0236"/>
    <dbReference type="eggNOG" id="COG1802">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_017584_5_0_4"/>
    <dbReference type="OMA" id="YQSEFHA"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003700">
        <property type="term" value="F:DNA-binding transcription factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd07377">
        <property type="entry name" value="WHTH_GntR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.120.530">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011711">
        <property type="entry name" value="GntR_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008920">
        <property type="entry name" value="TF_FadR/GntR_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000524">
        <property type="entry name" value="Tscrpt_reg_HTH_GntR"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036390">
        <property type="entry name" value="WH_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07729">
        <property type="entry name" value="FCD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00392">
        <property type="entry name" value="GntR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00035">
        <property type="entry name" value="HTHGNTR"/>
    </dbReference>
    <dbReference type="SMART" id="SM00895">
        <property type="entry name" value="FCD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00345">
        <property type="entry name" value="HTH_GNTR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46785">
        <property type="entry name" value="SSF46785"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48008">
        <property type="entry name" value="SSF48008"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50949">
        <property type="entry name" value="HTH_GNTR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0804">Transcription</keyword>
    <keyword evidence="1" id="KW-0805">Transcription regulation</keyword>
    <feature type="domain" description="HTH gntR-type" evidence="4">
        <location>
            <begin position="3"/>
            <end position="70"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023015"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023163"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="PROSITE" id="PS50949"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="ABX32882.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="228" mass="24870" checksum="CD880C6D3831A992" modified="2008-01-15" version="1">MTPVSPQHIAERVVEAILAQKLAPGERLGEQELADNFAVSRTMVREALMQLQARGFVQVQPRRGWYVVQPSAEEAQDAFAARRIIETGILGEAGRPMQSVIGQLRRHIAQEQDAIAGADAATRAFLLADFHVCLAEQMGHRLLALTLRDLTARTTLAATLFQSTHSASQSCAEHERIVEALERGDTEGAKALLLEHIGTVERSLEIRPPEAPDASDRLRATLAPLFGG</sequence>
</entry>
<entry dataset="Swiss-Prot" created="2009-04-14" modified="2022-08-03" version="68" xmlns="http://uniprot.org/uniprot">
    <accession>A9BPS5</accession>
    <name>RL16_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">50S ribosomal protein L16</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="1" type="primary">rplP</name>
        <name type="ordered locus">Daci_0398</name>
    </gene>
    <organism>
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference key="1">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain>DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="1">Binds 23S rRNA and is also seen to make contacts with the A and possibly P site tRNAs.</text>
    </comment>
    <comment type="subunit">
        <text evidence="1">Part of the 50S ribosomal subunit.</text>
    </comment>
    <comment type="similarity">
        <text evidence="1">Belongs to the universal ribosomal protein uL16 family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX33044.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012202336.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A9BPS5"/>
    <dbReference type="SMR" id="A9BPS5"/>
    <dbReference type="STRING" id="398578.Daci_0398"/>
    <dbReference type="PRIDE" id="A9BPS5"/>
    <dbReference type="EnsemblBacteria" id="ABX33044">
        <property type="protein sequence ID" value="ABX33044"/>
        <property type="gene ID" value="Daci_0398"/>
    </dbReference>
    <dbReference type="GeneID" id="60690805"/>
    <dbReference type="KEGG" id="dac:Daci_0398"/>
    <dbReference type="eggNOG" id="COG0197">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_078858_2_1_4"/>
    <dbReference type="OMA" id="KGAVEYW"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005840">
        <property type="term" value="C:ribosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0019843">
        <property type="term" value="F:rRNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003735">
        <property type="term" value="F:structural constituent of ribosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000049">
        <property type="term" value="F:tRNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006412">
        <property type="term" value="P:translation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd01433">
        <property type="entry name" value="Ribosomal_L16_L10e"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.1170.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01342">
        <property type="entry name" value="Ribosomal_L16"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016180">
        <property type="entry name" value="Ribosomal_L10e/L16"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036920">
        <property type="entry name" value="Ribosomal_L10e/L16_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000114">
        <property type="entry name" value="Ribosomal_L16"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020798">
        <property type="entry name" value="Ribosomal_L16_CS"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR12220">
        <property type="entry name" value="PTHR12220"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00252">
        <property type="entry name" value="Ribosomal_L16"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00060">
        <property type="entry name" value="RIBOSOMALL16"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54686">
        <property type="entry name" value="SSF54686"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01164">
        <property type="entry name" value="rplP_bact"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00586">
        <property type="entry name" value="RIBOSOMAL_L16_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword id="KW-1185">Reference proteome</keyword>
    <keyword id="KW-0687">Ribonucleoprotein</keyword>
    <keyword id="KW-0689">Ribosomal protein</keyword>
    <keyword id="KW-0694">RNA-binding</keyword>
    <keyword id="KW-0699">rRNA-binding</keyword>
    <keyword id="KW-0820">tRNA-binding</keyword>
    <feature type="chain" id="PRO_1000142958" description="50S ribosomal protein L16">
        <location>
            <begin position="1"/>
            <end position="138"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="1"/>
            <end position="22"/>
        </location>
    </feature>
    <evidence type="ECO:0000255" key="1">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01342"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <sequence length="138" mass="15447" checksum="A59C4BAD3CF5B1BA" modified="2008-01-15" version="1">MLQPARRKYRKEQKGRNTGIATRGNSVAFGDFGLKSTDRGRLTARQIEAARRAISRHVKRGGRIWIRVFPDKPISTKPAEVRMGNGKGNPEYYVAEIQPGKVLYEIVGVPEELAREAFRLAAAKLPLRTTFVSRQIGA</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="62" xmlns="http://uniprot.org/uniprot">
    <accession>A9BQ36</accession>
    <name>A9BQ36_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Tetratricopeptide domain protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Daci_0605</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="4" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX33251.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012202537.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_0605"/>
    <dbReference type="CAZy" id="GT41">
        <property type="family name" value="Glycosyltransferase Family 41"/>
    </dbReference>
    <dbReference type="PRIDE" id="A9BQ36"/>
    <dbReference type="EnsemblBacteria" id="ABX33251">
        <property type="protein sequence ID" value="ABX33251"/>
        <property type="gene ID" value="Daci_0605"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_0605"/>
    <dbReference type="eggNOG" id="COG0457">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="eggNOG" id="COG3914">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_001721_4_1_4"/>
    <dbReference type="OMA" id="CMASYIP"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.25.40.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029489">
        <property type="entry name" value="OGT/SEC/SPY_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011990">
        <property type="entry name" value="TPR-like_helical_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019734">
        <property type="entry name" value="TPR_repeat"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13844">
        <property type="entry name" value="Glyco_transf_41"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SMART" id="SM00028">
        <property type="entry name" value="TPR"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48452">
        <property type="entry name" value="SSF48452"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50005">
        <property type="entry name" value="TPR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0802">TPR repeat</keyword>
    <feature type="repeat" description="TPR" evidence="1">
        <location>
            <begin position="53"/>
            <end position="86"/>
        </location>
    </feature>
    <feature type="domain" description="Glyco_transf_41" evidence="2">
        <location>
            <begin position="162"/>
            <end position="314"/>
        </location>
    </feature>
    <feature type="domain" description="Glyco_transf_41" evidence="2">
        <location>
            <begin position="345"/>
            <end position="511"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00339"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF13844"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ABX33251.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="553" mass="62927" checksum="0CE693F4556C0CA9" modified="2008-01-15" version="1"> </sequence>
</entry>
<entry dataset="Swiss-Prot" created="2009-04-14" modified="2022-08-03" version="83" xmlns="http://uniprot.org/uniprot">
    <accession>A9BQ97</accession>
    <name>MOAC_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Cyclic pyranopterin monophosphate synthase</fullName>
            <ecNumber evidence="1">4.6.1.17</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="1">Molybdenum cofactor biosynthesis protein C</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="1" type="primary">moaC</name>
        <name type="ordered locus">Daci_0861</name>
    </gene>
    <organism>
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference key="1">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain>DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="1">Catalyzes the conversion of (8S)-3',8-cyclo-7,8-dihydroguanosine 5'-triphosphate to cyclic pyranopterin monophosphate (cPMP).</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>(8S)-3',8-cyclo-7,8-dihydroguanosine 5'-triphosphate = cyclic pyranopterin phosphate + diphosphate</text>
            <dbReference type="Rhea" id="RHEA:49580"/>
            <dbReference type="ChEBI" id="CHEBI:33019"/>
            <dbReference type="ChEBI" id="CHEBI:59648"/>
            <dbReference type="ChEBI" id="CHEBI:131766"/>
            <dbReference type="EC" id="4.6.1.17"/>
        </reaction>
    </comment>
    <comment type="pathway">
        <text evidence="1">Cofactor biosynthesis; molybdopterin biosynthesis.</text>
    </comment>
    <comment type="subunit">
        <text evidence="1">Homohexamer; trimer of dimers.</text>
    </comment>
    <comment type="similarity">
        <text evidence="1">Belongs to the MoaC family.</text>
    </comment>
    <dbReference type="EC" id="4.6.1.17" evidence="1"/>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX33507.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012202793.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A9BQ97"/>
    <dbReference type="SMR" id="A9BQ97"/>
    <dbReference type="STRING" id="398578.Daci_0861"/>
    <dbReference type="PRIDE" id="A9BQ97"/>
    <dbReference type="EnsemblBacteria" id="ABX33507">
        <property type="protein sequence ID" value="ABX33507"/>
        <property type="gene ID" value="Daci_0861"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_0861"/>
    <dbReference type="eggNOG" id="COG0315">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_074693_1_1_4"/>
    <dbReference type="OMA" id="IWDMVKS"/>
    <dbReference type="UniPathway" id="UPA00344"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0061799">
        <property type="term" value="F:cyclic pyranopterin monophosphate synthase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006777">
        <property type="term" value="P:Mo-molybdopterin cofactor biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd01420">
        <property type="entry name" value="MoaC_PE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.70.640">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01224_B">
        <property type="entry name" value="MoaC_B"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023045">
        <property type="entry name" value="Mo_CF_biosynth-C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036522">
        <property type="entry name" value="MoaC_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002820">
        <property type="entry name" value="Mopterin_CF_biosynth-C_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01967">
        <property type="entry name" value="MoaC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55040">
        <property type="entry name" value="SSF55040"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00581">
        <property type="entry name" value="moaC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword id="KW-0456">Lyase</keyword>
    <keyword id="KW-0501">Molybdenum cofactor biosynthesis</keyword>
    <keyword id="KW-1185">Reference proteome</keyword>
    <feature type="chain" id="PRO_1000139259" description="Cyclic pyranopterin monophosphate synthase">
        <location>
            <begin position="1"/>
            <end position="156"/>
        </location>
    </feature>
    <feature type="active site" evidence="1">
        <location>
            <position position="128"/>
        </location>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <begin position="75"/>
            <end position="77"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <begin position="113"/>
            <end position="114"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <evidence type="ECO:0000255" key="1">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01224"/>
        </source>
    </evidence>
    <sequence length="156" mass="16365" checksum="B7B3B7C8266C2ECF" modified="2008-01-15" version="1">MSSLTHFDAQGQAHMVDVGAKPATHRIAVAEGRIIMQPATLAIIQSGTAKKGDVLGIARIAGIMAAKKTSDLIPLCHPLALTRVAVEFDLLSDVSSVRCVATVETVGPTGVEMEALTAVQVALLTVYDMCKAVDKGMVMEGIRVLEKLGGKTNPSR</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="68" xmlns="http://uniprot.org/uniprot">
    <accession>A9BQE3</accession>
    <name>A9BQE3_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Glutathione S-transferase domain</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ordered locus">Daci_0907</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="5" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the GST superfamily.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX33553.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012202839.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_0907"/>
    <dbReference type="PRIDE" id="A9BQE3"/>
    <dbReference type="EnsemblBacteria" id="ABX33553">
        <property type="protein sequence ID" value="ABX33553"/>
        <property type="gene ID" value="Daci_0907"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_0907"/>
    <dbReference type="eggNOG" id="COG0625">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_011226_14_4_4"/>
    <dbReference type="OMA" id="FPITRKW"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016740">
        <property type="term" value="F:transferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006749">
        <property type="term" value="P:glutathione metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010987">
        <property type="entry name" value="Glutathione-S-Trfase_C-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036282">
        <property type="entry name" value="Glutathione-S-Trfase_C_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004045">
        <property type="entry name" value="Glutathione_S-Trfase_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004046">
        <property type="entry name" value="GST_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036249">
        <property type="entry name" value="Thioredoxin-like_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00043">
        <property type="entry name" value="GST_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02798">
        <property type="entry name" value="GST_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47616">
        <property type="entry name" value="SSF47616"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52833">
        <property type="entry name" value="SSF52833"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50405">
        <property type="entry name" value="GST_CTER"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50404">
        <property type="entry name" value="GST_NTER"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="GST N-terminal" evidence="2">
        <location>
            <begin position="21"/>
            <end position="108"/>
        </location>
    </feature>
    <feature type="domain" description="GST C-terminal" evidence="3">
        <location>
            <begin position="112"/>
            <end position="240"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="RuleBase" id="RU003494"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS50404"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="PROSITE" id="PS50405"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="ABX33553.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="240" mass="26827" checksum="6875F654DBFF4EB4" modified="2008-01-15" version="1">MTSQNPLSAFSVTRKWPATQPDRIQLYSLPTPNGVKVSIALEEMGLPYEAHRVGFESNDQLSPEFVDTFPNNKIPAILDPQGPGGKPLALFESGAILVYLAEKTGSPLLPADPAARYETLQWLMFQMGGVGPMFGQLGFFHKFAGKDFEDKRPRDRYVNESVRLLGVLERRLAGRAWVMGEQFTIADIALWPWVRNMVVEQGYNAAELLGWERFPELQRVLAAFVARPAVQKGLVTPPRN</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="51" xmlns="http://uniprot.org/uniprot">
    <accession>A9BQJ5</accession>
    <name>A9BQJ5_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Daci_0050</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="2" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX32697.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_0050"/>
    <dbReference type="PRIDE" id="A9BQJ5"/>
    <dbReference type="EnsemblBacteria" id="ABX32697">
        <property type="protein sequence ID" value="ABX32697"/>
        <property type="gene ID" value="Daci_0050"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_0050"/>
    <dbReference type="eggNOG" id="COG3545">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_088863_2_2_4"/>
    <dbReference type="OMA" id="LLPGWQN"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016787">
        <property type="term" value="F:hydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.1820">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029058">
        <property type="entry name" value="AB_hydrolase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010662">
        <property type="entry name" value="Hydrolase_RBBP9/YdeN"/>
    </dbReference>
    <dbReference type="Pfam" id="PF06821">
        <property type="entry name" value="Ser_hydrolase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53474">
        <property type="entry name" value="SSF53474"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ABX32697.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="186" mass="20682" checksum="B628C98D8ADF466D" modified="2008-01-15" version="1">MAEQTMQIDVTAEDVWLLPGWQNSDADHWQSRWEQRHGYRRLEQNDWDRPLRGDWSARLQETVLDAPRPVVLVAHSLGCILVAWWAAHSPLAARKVRGALLVAPGDTEQPQLREQLPGWSPVMMQRLPFASIVVGSDNDIYCSAQRVQAMADAWGARFVDAGPSGHLNTASGLGDWDSGHALLASL</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="67" xmlns="http://uniprot.org/uniprot">
    <accession>A9BQK9</accession>
    <name>A9BQK9_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">FAD linked oxidase domain protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_0064</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX32711.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012202004.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_0064"/>
    <dbReference type="PRIDE" id="A9BQK9"/>
    <dbReference type="EnsemblBacteria" id="ABX32711">
        <property type="protein sequence ID" value="ABX32711"/>
        <property type="gene ID" value="Daci_0064"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_0064"/>
    <dbReference type="eggNOG" id="COG0277">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_017779_3_0_4"/>
    <dbReference type="OMA" id="MLLMEFH"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0071949">
        <property type="term" value="F:FAD binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016491">
        <property type="term" value="F:oxidoreductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.45.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.465.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016166">
        <property type="entry name" value="FAD-bd_PCMH"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036318">
        <property type="entry name" value="FAD-bd_PCMH-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016169">
        <property type="entry name" value="FAD-bd_PCMH_sub2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016164">
        <property type="entry name" value="FAD-linked_Oxase-like_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004113">
        <property type="entry name" value="FAD-linked_oxidase_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006094">
        <property type="entry name" value="Oxid_FAD_bind_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016171">
        <property type="entry name" value="Vanillyl_alc_oxidase_C-sub2"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02913">
        <property type="entry name" value="FAD-oxidase_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01565">
        <property type="entry name" value="FAD_binding_4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55103">
        <property type="entry name" value="SSF55103"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56176">
        <property type="entry name" value="SSF56176"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51387">
        <property type="entry name" value="FAD_PCMH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="FAD-binding PCMH-type" evidence="1">
        <location>
            <begin position="53"/>
            <end position="230"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS51387"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX32711.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="474" mass="50953" checksum="636F2D2F8EC9A7A0" modified="2008-01-15" version="1">MNAPVAPVRLQPDFAQRPIPEAFLQALAQRFGAQCSTALAVREQHGRDEGAIQAPPPAAVVFAESTQDVQDALKLADQHAVPVIPYGAGSSLEGHLLAVEGGISLDLSRMNRILSVNAEDLTVTVQPGITRKQLNDAIKDTGFFFPIDPGADASIGGMTATRASGTNAVRYGTMRENVLALELVTASGELMRTGTRAKKSSAGYDLTRLIVGSEGTLGVVTEITVRLYPLPEAVSAAICSFPSIEAAVRTVIQTIQMGVPIARVELVDVNSVRMVNAYSKLTLREEPMLLMEFHGSPTGVKEQAEMVQDIAGEFGGNAFEWAERPEDRTRLFTARHNAYFAAVSSRPGCRCITTDACVPISRLADALLDSVREADDSGIPYFLVGHVGDGNFHFGYLIDPDNEDERSRAEQLNHQLVSRSIALGGTCTGEHGVGIHKMDFLREEAGDGAVQMMRSIKQALDPKNILNPGKIFSL</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="57" xmlns="http://uniprot.org/uniprot">
    <accession>A9BR12</accession>
    <name>A9BR12_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Glycosyl transferase family 2</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Daci_0321</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="4" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX32967.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012202260.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_0321"/>
    <dbReference type="CAZy" id="GT2">
        <property type="family name" value="Glycosyltransferase Family 2"/>
    </dbReference>
    <dbReference type="PRIDE" id="A9BR12"/>
    <dbReference type="EnsemblBacteria" id="ABX32967">
        <property type="protein sequence ID" value="ABX32967"/>
        <property type="gene ID" value="Daci_0321"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_0321"/>
    <dbReference type="eggNOG" id="COG0463">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_025996_25_1_4"/>
    <dbReference type="OMA" id="LHAWSKI"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016740">
        <property type="term" value="F:transferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.550.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001173">
        <property type="entry name" value="Glyco_trans_2-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029044">
        <property type="entry name" value="Nucleotide-diphossugar_trans"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00535">
        <property type="entry name" value="Glycos_transf_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53448">
        <property type="entry name" value="SSF53448"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1 3" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Glyco_trans_2-like" evidence="2">
        <location>
            <begin position="5"/>
            <end position="150"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF00535"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ABX32967.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="342" mass="38913" checksum="7DC3D0393DFFD06C" modified="2008-01-15" version="1">MTWLSILVPVYNVLPYLEECLQSVMDQADAGVQVLVLDDCSTDGSWALMQQLDQRWPGRLQLMQHERNAGLSAARNTMIEAATGDYLWFLDSDDKLLPGAIAGLSAIVKQHAPDAVLCDFSVWREAPRLKHRLRGEAHRHSFQGPTLQRSQDRGALLAGLLRTGQLHAWSKISRRSLWDAGLRFPAGRYFEDMMTMPQMALRCSSFYYHPQPWVAYRQRANSILASMTPAKAADQSAALWPLAQAVQALQDDALRNDGRLHFAWAHQAARNLIGALRFLDRQRDMPPAQRQVLAQQFLADFGRISPLSLPALRQAYVRRGWVLRAWKLRRWEQWARQQGAHA</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="37" xmlns="http://uniprot.org/uniprot">
    <accession>A9BR17</accession>
    <name>A9BR17_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_0326</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX32972.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012202265.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="PRIDE" id="A9BR17"/>
    <dbReference type="EnsemblBacteria" id="ABX32972">
        <property type="protein sequence ID" value="ABX32972"/>
        <property type="gene ID" value="Daci_0326"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_0326"/>
    <dbReference type="HOGENOM" id="CLU_1802975_0_0_4"/>
    <dbReference type="OMA" id="WHLASCA"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="26"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX32972.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="145" mass="16736" checksum="02268E6A6DA797D6" modified="2008-01-15" version="1">MTSRKNTAGAAVQAQPLPKRSQAARPSDWPSAWQAMHVCLVVIEGRLVTLAEVCGKKPDRKARQFDVECAVELALAHIRRMRADPPDSHQAFEQQWHLASCAIELADGAYRFPRSRYGRLLKRTRWHFDLLRDLVERVEWQHRRG</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="61" xmlns="http://uniprot.org/uniprot">
    <accession>A9BRT9</accession>
    <name>A9BRT9_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Metal dependent phosphohydrolase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_1010</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX33656.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012202942.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_1010"/>
    <dbReference type="PRIDE" id="A9BRT9"/>
    <dbReference type="EnsemblBacteria" id="ABX33656">
        <property type="protein sequence ID" value="ABX33656"/>
        <property type="gene ID" value="Daci_1010"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_1010"/>
    <dbReference type="eggNOG" id="COG2206">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_000445_92_1_4"/>
    <dbReference type="OMA" id="HMAIEYL"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008081">
        <property type="term" value="F:phosphoric diester hydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="CDD" id="cd00077">
        <property type="entry name" value="HDc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR021812">
        <property type="entry name" value="DUF3391"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003607">
        <property type="entry name" value="HD/PDEase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037522">
        <property type="entry name" value="HD_GYP_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006675">
        <property type="entry name" value="HDIG_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF11871">
        <property type="entry name" value="DUF3391"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00471">
        <property type="entry name" value="HDc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00277">
        <property type="entry name" value="HDIG"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51832">
        <property type="entry name" value="HD_GYP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HD-GYP" evidence="1">
        <location>
            <begin position="143"/>
            <end position="338"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS51832"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX33656.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="419" mass="47107" checksum="705AACD6734E76E5" modified="2008-01-15" version="1">MLKRINVQHVTLGMFLHEFCGSWMEHPFWRTRFLLRSEADLQRLRSTSIQEVWIDVRKGLDVGVQVPCLRFDPQDELRHQIPDSARPVSEQSTAPISTATELRRAAQTCVQARQLLSRLFSDARLGRPVDATAAGQLVDDVTASVARNPHALIGLARLKTADDYTYMHSLAVCALMVALAKRMGLDDHSLRKAGMAGLMHDLGKTAIPVAVLNKPGPLDDAEWALMRAHPRHGEQLLRPLGLDDEVIDACLHHHEKVDGSGYPDGLQQGDIGLLARMTAICDVYDAITSDRPYKKGWPPSEALRRMAEWSPRHFDKRLFEQFVQTVGIYPLGSLVRLHSQRLAVVVDASPGSLLAPRVKVFYSLRQACRITPEIEDLSESQGNDRIIAREDPANWDFPDLETLWLEFERQPQTQAQMAK</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="55" xmlns="http://uniprot.org/uniprot">
    <accession>A9BS49</accession>
    <name>A9BS49_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Phenylacetate-CoA oxygenase, PaaJ subunit</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_0813</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX33459.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012202745.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_0813"/>
    <dbReference type="PRIDE" id="A9BS49"/>
    <dbReference type="EnsemblBacteria" id="ABX33459">
        <property type="protein sequence ID" value="ABX33459"/>
        <property type="gene ID" value="Daci_0813"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_0813"/>
    <dbReference type="eggNOG" id="COG2151">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_082133_0_0_4"/>
    <dbReference type="OMA" id="EPFDHFK"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.300.130">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR034904">
        <property type="entry name" value="FSCA_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002744">
        <property type="entry name" value="MIP18-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011883">
        <property type="entry name" value="PA_CoA_Oase4"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01883">
        <property type="entry name" value="FeS_assembly_P"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF117916">
        <property type="entry name" value="SSF117916"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR02159">
        <property type="entry name" value="PA_CoA_Oxy4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="FeS_assembly_P" evidence="1">
        <location>
            <begin position="21"/>
            <end position="82"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF01883"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX33459.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="189" mass="20262" checksum="2C0E7C7834740AD9" modified="2008-01-15" version="1">MAAARLVAVTSASAERERLAWAALQDVPDPEVPVISVCELGIVREVHALPEGQGMEIVLTPTYSGCPATEVIERSVLEAIEAAGLGPARAVLRRAPAWTTDWISDDGRRKLREYGIAPPGRCGDAGLPEGTSPIRLVRRRQGIAAPEPVACPHCGSAHTERLSAFGATACKALHRCLDCREPFEHFKPI</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="68" xmlns="http://uniprot.org/uniprot">
    <accession>A9BS51</accession>
    <name>A9BS51_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Sulphate transporter</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Daci_0815</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="4" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX33461.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012202747.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_0815"/>
    <dbReference type="PRIDE" id="A9BS51"/>
    <dbReference type="EnsemblBacteria" id="ABX33461">
        <property type="protein sequence ID" value="ABX33461"/>
        <property type="gene ID" value="Daci_0815"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_0815"/>
    <dbReference type="eggNOG" id="COG0659">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_003182_7_0_4"/>
    <dbReference type="OMA" id="GCALVGQ"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015116">
        <property type="term" value="F:sulfate transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.750.24">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011547">
        <property type="entry name" value="SLC26A/SulP_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002645">
        <property type="entry name" value="STAS_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036513">
        <property type="entry name" value="STAS_dom_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01740">
        <property type="entry name" value="STAS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00916">
        <property type="entry name" value="Sulfate_transp"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52091">
        <property type="entry name" value="SSF52091"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50801">
        <property type="entry name" value="STAS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="20"/>
            <end position="40"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="46"/>
            <end position="62"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="91"/>
            <end position="113"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="120"/>
            <end position="137"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="143"/>
            <end position="163"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="170"/>
            <end position="187"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="219"/>
            <end position="239"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="260"/>
            <end position="281"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="293"/>
            <end position="311"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="318"/>
            <end position="335"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="355"/>
            <end position="384"/>
        </location>
    </feature>
    <feature type="domain" description="STAS" evidence="2">
        <location>
            <begin position="390"/>
            <end position="484"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS50801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ABX33461.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="484" mass="50528" checksum="4B68B512D79592BE" modified="2008-01-15" version="1">MSKHPHPFRAEWAPSIPRELMAGAVATFALIPEVIAFSFVAGVDPAVGLFASFVISIVIAFTGARPAMVSAAAGSVALVAAPLVHAHGVQYLFAAGILAGAVQILFGVLRLGVLMRYVSGSVRTGFVNALAILIFSAQMPHLIGANAATWAMVGAGLLIIYGLPRLTTAVPSPLVCIVVLTVAANWLDLPLKTVADLGLLPDGLPSFGLPQVPWSLETLRLIALPALAIAMVGLLESMMTASVVDELTDTPSSKNRECSGIGVANIAASLFGGIAGCAMIGQTVGNVRYGGRGRLSTLFAGAFLLILMVLLKPWVSQVPVAALVAIMVMVSASTLDWGSARALLRHPKLSSAVMLATVVVTVATDNLAAGVGVGVLLSGVFFTFKVSRLLSVEKTQDGAGLTYRVSGQVFFASADLLVDAFDVRDIEGRPVRIALDNAHFWDITAVNALDKVCQRLRKHGSTVEVTGLNEHGRALVSRLDIGIE</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="53" xmlns="http://uniprot.org/uniprot">
    <accession>A9BS89</accession>
    <name>A9BS89_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="1">OsmC family protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Daci_1058</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="2" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX33703.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_1058"/>
    <dbReference type="PRIDE" id="A9BS89"/>
    <dbReference type="EnsemblBacteria" id="ABX33703">
        <property type="protein sequence ID" value="ABX33703"/>
        <property type="gene ID" value="Daci_1058"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_1058"/>
    <dbReference type="eggNOG" id="COG1765">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_100275_1_0_4"/>
    <dbReference type="OMA" id="GHEATPI"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.300.20">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015946">
        <property type="entry name" value="KH_dom-like_a/b"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003718">
        <property type="entry name" value="OsmC/Ohr_fam"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036102">
        <property type="entry name" value="OsmC/Ohrsf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02566">
        <property type="entry name" value="OsmC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF82784">
        <property type="entry name" value="SSF82784"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ABX33703.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="200" mass="21701" checksum="E1BEB6AAC9D80731" modified="2008-01-15" version="1">MRRSQQWAGTSFTESPSMSHLNEYLAEKRAAVLARSAAVAAGTAQPAHLKAHVRAEGRSGVRRLRIREHQVISDSPPDFAGYNLGPSSPELQLGVLGTCVTHIFLIQAAERQVPVESLEVEVTGIIDPRGGKPGHEATPIWPHEIGYTVHIDSPASRAEIDALFEAVERTCPILNLLRNPQNIRAEVRHTDSSAAARLAA</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="75" xmlns="http://uniprot.org/uniprot">
    <accession>A9BSB4</accession>
    <name>A9BSB4_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="3">FAD linked oxidase domain protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Daci_1083</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="4" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX33728.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_1083"/>
    <dbReference type="PRIDE" id="A9BSB4"/>
    <dbReference type="EnsemblBacteria" id="ABX33728">
        <property type="protein sequence ID" value="ABX33728"/>
        <property type="gene ID" value="Daci_1083"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_1083"/>
    <dbReference type="eggNOG" id="COG0277">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_017779_9_2_4"/>
    <dbReference type="OMA" id="TPRTCGE"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0071949">
        <property type="term" value="F:FAD binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016491">
        <property type="term" value="F:oxidoreductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.45.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.465.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016166">
        <property type="entry name" value="FAD-bd_PCMH"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036318">
        <property type="entry name" value="FAD-bd_PCMH-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016169">
        <property type="entry name" value="FAD-bd_PCMH_sub2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016164">
        <property type="entry name" value="FAD-linked_Oxase-like_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004113">
        <property type="entry name" value="FAD-linked_oxidase_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006094">
        <property type="entry name" value="Oxid_FAD_bind_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016171">
        <property type="entry name" value="Vanillyl_alc_oxidase_C-sub2"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02913">
        <property type="entry name" value="FAD-oxidase_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01565">
        <property type="entry name" value="FAD_binding_4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55103">
        <property type="entry name" value="SSF55103"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56176">
        <property type="entry name" value="SSF56176"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51387">
        <property type="entry name" value="FAD_PCMH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="FAD-binding PCMH-type" evidence="2">
        <location>
            <begin position="70"/>
            <end position="248"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="34"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS51387"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ABX33728.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="517" mass="54702" checksum="E3F8D05F9208B4B4" modified="2008-01-15" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="64" xmlns="http://uniprot.org/uniprot">
    <accession>A9BSB8</accession>
    <name>A9BSB8_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Heavy metal efflux pump, CzcA family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ordered locus">Daci_1087</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="6" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX33732.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012203018.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_1087"/>
    <dbReference type="PRIDE" id="A9BSB8"/>
    <dbReference type="EnsemblBacteria" id="ABX33732">
        <property type="protein sequence ID" value="ABX33732"/>
        <property type="gene ID" value="Daci_1087"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_1087"/>
    <dbReference type="eggNOG" id="COG3696">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_002755_1_2_4"/>
    <dbReference type="OMA" id="QVMMLKG"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008324">
        <property type="term" value="F:cation transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.2090.10">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027463">
        <property type="entry name" value="AcrB_DN_DC_subdom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001036">
        <property type="entry name" value="Acrflvin-R"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004763">
        <property type="entry name" value="CzcA/CusA/SilA/NccA/HelA/CnrA"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR32063">
        <property type="entry name" value="PTHR32063"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00873">
        <property type="entry name" value="ACR_tran"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00702">
        <property type="entry name" value="ACRIFLAVINRP"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF82714">
        <property type="entry name" value="SSF82714"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00914">
        <property type="entry name" value="2A0601"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-0472">Membrane</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="4" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="4">
        <location>
            <begin position="12"/>
            <end position="31"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="4">
        <location>
            <begin position="395"/>
            <end position="414"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="4">
        <location>
            <begin position="452"/>
            <end position="472"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="4">
        <location>
            <begin position="484"/>
            <end position="508"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="4">
        <location>
            <begin position="529"/>
            <end position="555"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="4">
        <location>
            <begin position="880"/>
            <end position="899"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="4">
        <location>
            <begin position="906"/>
            <end position="925"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="4">
        <location>
            <begin position="931"/>
            <end position="956"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="4">
        <location>
            <begin position="981"/>
            <end position="1003"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="4">
        <location>
            <begin position="1009"/>
            <end position="1032"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="3">
        <location>
            <begin position="1041"/>
            <end position="1061"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00010942"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="ABX33732.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="1061" mass="114555" checksum="87A2BA2930BC6397" modified="2008-01-15" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="64" xmlns="http://uniprot.org/uniprot">
    <accession>A9BT60</accession>
    <name>A9BT60_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Amidohydrolase 3</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_1985</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX34625.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012203910.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_1985"/>
    <dbReference type="PRIDE" id="A9BT60"/>
    <dbReference type="EnsemblBacteria" id="ABX34625">
        <property type="protein sequence ID" value="ABX34625"/>
        <property type="gene ID" value="Daci_1985"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_1985"/>
    <dbReference type="eggNOG" id="COG1574">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_009942_2_0_4"/>
    <dbReference type="OMA" id="MEGAMWD"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016810">
        <property type="term" value="F:hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd01300">
        <property type="entry name" value="YtcJ_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.30.40.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013108">
        <property type="entry name" value="Amidohydro_3"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011059">
        <property type="entry name" value="Metal-dep_hydrolase_composite"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR032466">
        <property type="entry name" value="Metal_Hydrolase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR033932">
        <property type="entry name" value="YtcJ-like"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07969">
        <property type="entry name" value="Amidohydro_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51338">
        <property type="entry name" value="SSF51338"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51556">
        <property type="entry name" value="SSF51556"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Amidohydro_3" evidence="1">
        <location>
            <begin position="58"/>
            <end position="546"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF07969"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX34625.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="554" mass="59685" checksum="E9ED93F3E9CAD23C" modified="2008-01-15" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="60" xmlns="http://uniprot.org/uniprot">
    <accession>A9BTC1</accession>
    <name>A9BTC1_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="3">ThiJ/PfpI domain protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Daci_2046</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="4" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX34686.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012203971.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_2046"/>
    <dbReference type="MEROPS" id="C56.006"/>
    <dbReference type="PRIDE" id="A9BTC1"/>
    <dbReference type="EnsemblBacteria" id="ABX34686">
        <property type="protein sequence ID" value="ABX34686"/>
        <property type="gene ID" value="Daci_2046"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_2046"/>
    <dbReference type="eggNOG" id="COG0693">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_066933_0_0_4"/>
    <dbReference type="OMA" id="PMYHLDK"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0036524">
        <property type="term" value="F:protein deglycase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.880">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029062">
        <property type="entry name" value="Class_I_gatase-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002818">
        <property type="entry name" value="DJ-1/PfpI"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017283">
        <property type="entry name" value="HchA"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01965">
        <property type="entry name" value="DJ-1_PfpI"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF037798">
        <property type="entry name" value="Chaperone_HchA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52317">
        <property type="entry name" value="SSF52317"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0346">Stress response</keyword>
    <feature type="domain" description="DJ-1_PfpI" evidence="2">
        <location>
            <begin position="77"/>
            <end position="211"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023016"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF01965"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ABX34686.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="282" mass="30631" checksum="B9260A424851D70A" modified="2008-01-15" version="1">MAEQATPDKQPQPDPAEFNAFFPSRYSLSQFTSPKSDLRDADYATTYQGSKKILMIGADERYLLTDNGSFFSTGNHPVETLLPMYHLDKAGFAFDVATVSGNPVKFEFWAMPSEDETVKGFFDKYHPQFKQPLRLSSVLAQGLEQYAAIFVPGGHGALIGLPDSRDVGAVLKWAAAHNRFVISLCHGPAAFLAVGDSDIYRGYKICAFPDALDAQTPDIGYMPGHLTWKFGERLKALGIEIVNDGISGAVHRDRQLITGDSPLAGNALGKLAAKTLLAEVAA</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="59" xmlns="http://uniprot.org/uniprot">
    <accession>A9BTD6</accession>
    <name>A9BTD6_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Glycosyl transferase group 1</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Daci_2061</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="4" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX34701.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012203984.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_2061"/>
    <dbReference type="CAZy" id="GT4">
        <property type="family name" value="Glycosyltransferase Family 4"/>
    </dbReference>
    <dbReference type="PRIDE" id="A9BTD6"/>
    <dbReference type="EnsemblBacteria" id="ABX34701">
        <property type="protein sequence ID" value="ABX34701"/>
        <property type="gene ID" value="Daci_2061"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_2061"/>
    <dbReference type="eggNOG" id="COG0438">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_675517_0_0_4"/>
    <dbReference type="OMA" id="EPYRGCH"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016757">
        <property type="term" value="F:glycosyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001296">
        <property type="entry name" value="Glyco_trans_1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR022623">
        <property type="entry name" value="Glyco_trans_4_3"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12000">
        <property type="entry name" value="Glyco_trans_4_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00534">
        <property type="entry name" value="Glycos_transf_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Glyco_trans_4_3" evidence="2">
        <location>
            <begin position="32"/>
            <end position="195"/>
        </location>
    </feature>
    <feature type="domain" description="Glycos_transf_1" evidence="1">
        <location>
            <begin position="210"/>
            <end position="385"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF00534"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF12000"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ABX34701.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="418" mass="47306" checksum="7F460CD0FCF80BB2" modified="2008-01-15" version="1">MQDKPVIIFVSAVYPSQYSLLCSHLRASGAADSWFMTMPGHAENYASQCDHLLSFRPDGDIVGPQSYYYSSKVERSARIGRGLLQGLQAFEKEKGKRIDVVVAHSLWAAPNLLYGEIDAAIVSYIEFPSYRVHGNEPDYPPDLSQRLADRNMEMLHYHQVLCSDLTIAPSAHARSLFPPLLQERVAVQFEGFDIQAPDEQAEPPPRQDTRFTVAFSSRDLSSSKGFETFMRLVDRLVREGDGQQMRFIALGDPTAVTYGYEQQWVERRYQGKVASFRDHLLQIHPAAQVVEFPGKLPYDEFARTLASVDLFLYPLRYGVANWGLMEILARGGCVIGSNWGFVPELVQNDVNGLLLPDSDDAWIGAIRQLRDDPARRQRYGRAARETGKRFHISNVAPRFMDLFRLAMARRKAAPLMLE</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="80" xmlns="http://uniprot.org/uniprot">
    <accession>A9BTY6</accession>
    <name>A9BTY6_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Transcriptional regulator, MarR family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Daci_2762</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="4" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX35400.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_2762"/>
    <dbReference type="PRIDE" id="A9BTY6"/>
    <dbReference type="EnsemblBacteria" id="ABX35400">
        <property type="protein sequence ID" value="ABX35400"/>
        <property type="gene ID" value="Daci_2762"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_2762"/>
    <dbReference type="eggNOG" id="COG1846">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_083287_4_1_4"/>
    <dbReference type="OMA" id="QECVAAF"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003700">
        <property type="term" value="F:DNA-binding transcription factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000835">
        <property type="entry name" value="HTH_MarR-typ"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036390">
        <property type="entry name" value="WH_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01047">
        <property type="entry name" value="MarR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00598">
        <property type="entry name" value="HTHMARR"/>
    </dbReference>
    <dbReference type="SMART" id="SM00347">
        <property type="entry name" value="HTH_MARR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46785">
        <property type="entry name" value="SSF46785"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50995">
        <property type="entry name" value="HTH_MARR_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HTH marR-type" evidence="2">
        <location>
            <begin position="45"/>
            <end position="177"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="37"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="19"/>
            <end position="37"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS50995"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ABX35400.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="184" mass="20551" checksum="19F120391B8B4E19" modified="2008-01-15" version="1">MMERRTGPEDPQAPGRLCLGVPSSSSRSVSMDSSSEPAVDQSRLQRFLGYRLTRAEIHIHKLFARRVAELDLKPSEFSILVLIHSNPGIYLRQLGEALDISPSNLVPVVERLVQRGLIGRQPDPRDRRLQQLHMTAEGSALQARAEGVVVQLEDELEQLLTSTEQRHLFAALDKLMAIQESQPG</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="39" xmlns="http://uniprot.org/uniprot">
    <accession>A9BU19</accession>
    <name>A9BU19_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_3096</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX35734.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_3096"/>
    <dbReference type="PRIDE" id="A9BU19"/>
    <dbReference type="EnsemblBacteria" id="ABX35734">
        <property type="protein sequence ID" value="ABX35734"/>
        <property type="gene ID" value="Daci_3096"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_3096"/>
    <dbReference type="eggNOG" id="ENOG5032TCX">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_101382_0_0_4"/>
    <dbReference type="OMA" id="VETHRMF"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010767">
        <property type="entry name" value="Phage_CGC-2007_Cje0229"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07087">
        <property type="entry name" value="DUF1353"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="1">
        <location>
            <begin position="1"/>
            <end position="23"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5002733078" evidence="1">
        <location>
            <begin position="24"/>
            <end position="230"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX35734.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="230" mass="25020" checksum="91AF7707B1FFB5FB" modified="2008-01-15" version="1">MNPSWFRTLATAAALLTPTLAPAQFSGDLVLWPKGCEAAGQCIIKEALRFKDASGTVWEAKAGLKTDGASIPGVFQPFIGSPFETRFIKAAVIHDHYCDRHVRSWRMTHRVFYDALLDQGVSQAKAKTMYLAVLVGGPKWIRLIAGNACGKNCINAMKSVTGDTGFQTRPADYSLPALAPAMQEVLTQLEANPNALTLEQIEERAQQLMPGDFYFANGDTLVVTGEDAIQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-05-25" version="84" xmlns="http://uniprot.org/uniprot">
    <accession>A9BU75</accession>
    <name>A9BU75_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="8">Transport system permease protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="8" type="ordered locus">Daci_3152</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="9" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX35790.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012204991.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_3152"/>
    <dbReference type="EnsemblBacteria" id="ABX35790">
        <property type="protein sequence ID" value="ABX35790"/>
        <property type="gene ID" value="Daci_3152"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_3152"/>
    <dbReference type="eggNOG" id="COG4779">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_013016_1_1_4"/>
    <dbReference type="OMA" id="QRLFMPY"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0022857">
        <property type="term" value="F:transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.3470.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037294">
        <property type="entry name" value="ABC_BtuC-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000522">
        <property type="entry name" value="ABC_transptr_permease_BtuC"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30472">
        <property type="entry name" value="PTHR30472"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01032">
        <property type="entry name" value="FecCD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF81345">
        <property type="entry name" value="SSF81345"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="6 7" id="KW-0472">Membrane</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4 7" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="5 7" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="24"/>
            <end position="49"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="79"/>
            <end position="97"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="109"/>
            <end position="126"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="132"/>
            <end position="152"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="164"/>
            <end position="186"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="206"/>
            <end position="228"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="256"/>
            <end position="280"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="320"/>
            <end position="341"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00007935"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="ABX35790.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="346" mass="35293" checksum="E9155EE23CAD47D6" modified="2008-01-15" version="1">MKTFVNTSVVRWGACSFLWRPRPLAVGMALVVLALVLGVLLLGTGTLSLSPAEVLDSLLGTGSNPAAERIVQRVRLPRVLTAVFVGASLGMAGAIFQSISRNALGSPDVIGFTTGAASGAIALIVLGDAGPLWTSLAAVLSGMATAAVVLALSGGQRAGGGYRLVLVGIGVGATLSGLNTILLVMGDLDRAVAAQRWLAGSLSARTWAHVAPAALGFIAIVPVVLWCARRINLLELGDDAATQLGVNVPRTRLTMVMAAVALTAIATAAAGPIAFIALAAPQVARRLGLSPDVPLCTAAAMGAVLLLAADMLSQWAPVRLHLPIGLVTGLLGGVYLLWLLFRTRKG</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="63" xmlns="http://uniprot.org/uniprot">
    <accession>A9BUD9</accession>
    <name>A9BUD9_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Enoyl-CoA hydratase/isomerase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_1197</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the enoyl-CoA hydratase/isomerase family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX33842.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012203128.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_1197"/>
    <dbReference type="PRIDE" id="A9BUD9"/>
    <dbReference type="EnsemblBacteria" id="ABX33842">
        <property type="protein sequence ID" value="ABX33842"/>
        <property type="gene ID" value="Daci_1197"/>
    </dbReference>
    <dbReference type="GeneID" id="60685765"/>
    <dbReference type="KEGG" id="dac:Daci_1197"/>
    <dbReference type="eggNOG" id="COG1024">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_009834_7_6_4"/>
    <dbReference type="OMA" id="QWFDDEP"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016853">
        <property type="term" value="F:isomerase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.12.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029045">
        <property type="entry name" value="ClpP/crotonase-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001753">
        <property type="entry name" value="Enoyl-CoA_hydra/iso"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014748">
        <property type="entry name" value="Enoyl-CoA_hydra_C"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00378">
        <property type="entry name" value="ECH_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52096">
        <property type="entry name" value="SSF52096"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2" id="KW-0413">Isomerase</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00005254"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX33842.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="271" mass="29412" checksum="A840B2A294388181" modified="2008-01-15" version="1">MDINTPTPPPEGCISCEVRGHVLLIGINRPAKRNGWTPPMFQQLAEAYTRLDDDPELRVGVLHAFGSHFTAGLDLPVMAEYLRSGRKAIPQGLVEPHDYGLVGYRRRAKPMVVAVKGICFTVGIELMLGADIVVAADDCRFSQLEVQRCIMPTGGATLRMAERAGVGNAMLHLLTADEFDSAEAYRLNFVQKVVPAGQELAEALRIAERIAAQAPQAVVATRLNVLKAIELGQAAAVADFIPVQQRLASSEDAAEGVRSFIEKRPARFTGR</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="78" xmlns="http://uniprot.org/uniprot">
    <accession>A9BUE0</accession>
    <name>A9BUE0_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="8">3-hydroxybutyryl-CoA dehydrogenase</fullName>
            <ecNumber evidence="8">1.1.1.157</ecNumber>
        </submittedName>
    </protein>
    <gene>
        <name evidence="8" type="ordered locus">Daci_1198</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="9" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the 3-hydroxyacyl-CoA dehydrogenase family.</text>
    </comment>
    <dbReference type="EC" id="1.1.1.157" evidence="8"/>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX33843.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012203129.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_1198"/>
    <dbReference type="PRIDE" id="A9BUE0"/>
    <dbReference type="EnsemblBacteria" id="ABX33843">
        <property type="protein sequence ID" value="ABX33843"/>
        <property type="gene ID" value="Daci_1198"/>
    </dbReference>
    <dbReference type="GeneID" id="60685766"/>
    <dbReference type="KEGG" id="dac:Daci_1198"/>
    <dbReference type="eggNOG" id="COG1250">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_009834_2_0_4"/>
    <dbReference type="OMA" id="FYDYSES"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008691">
        <property type="term" value="F:3-hydroxybutyryl-CoA dehydrogenase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0070403">
        <property type="term" value="F:NAD+ binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0044248">
        <property type="term" value="P:cellular catabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006631">
        <property type="term" value="P:fatty acid metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:1901575">
        <property type="term" value="P:organic substance catabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.1040.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR022694">
        <property type="entry name" value="3-OHacyl-CoA_DH"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006180">
        <property type="entry name" value="3-OHacyl-CoA_DH_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006176">
        <property type="entry name" value="3-OHacyl-CoA_DH_NAD-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006108">
        <property type="entry name" value="3HC_DH_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008927">
        <property type="entry name" value="6-PGluconate_DH-like_C_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013328">
        <property type="entry name" value="6PGD_dom2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036291">
        <property type="entry name" value="NAD(P)-bd_dom_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00725">
        <property type="entry name" value="3HCDH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02737">
        <property type="entry name" value="3HCDH_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF000105">
        <property type="entry name" value="HCDH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48179">
        <property type="entry name" value="SSF48179"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51735">
        <property type="entry name" value="SSF51735"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00067">
        <property type="entry name" value="3HCDH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2 4" id="KW-0520">NAD</keyword>
    <keyword evidence="8" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="3HCDH_N" evidence="7">
        <location>
            <begin position="5"/>
            <end position="183"/>
        </location>
    </feature>
    <feature type="domain" description="3HCDH" evidence="6">
        <location>
            <begin position="186"/>
            <end position="282"/>
        </location>
    </feature>
    <feature type="binding site" evidence="4">
        <location>
            <begin position="10"/>
            <end position="15"/>
        </location>
        <ligand>
            <name>NAD(+)</name>
            <dbReference type="ChEBI" id="CHEBI:57540"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="4">
        <location>
            <position position="33"/>
        </location>
        <ligand>
            <name>NAD(+)</name>
            <dbReference type="ChEBI" id="CHEBI:57540"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <position position="49"/>
        </location>
        <ligand>
            <name>CoA</name>
            <dbReference type="ChEBI" id="CHEBI:57287"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <position position="56"/>
        </location>
        <ligand>
            <name>CoA</name>
            <dbReference type="ChEBI" id="CHEBI:57287"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="4">
        <location>
            <position position="92"/>
        </location>
        <ligand>
            <name>NAD(+)</name>
            <dbReference type="ChEBI" id="CHEBI:57540"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="4">
        <location>
            <position position="97"/>
        </location>
        <ligand>
            <name>NAD(+)</name>
            <dbReference type="ChEBI" id="CHEBI:57540"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="4 5">
        <location>
            <position position="119"/>
        </location>
    </feature>
    <feature type="binding site" evidence="4">
        <location>
            <position position="143"/>
        </location>
        <ligand>
            <name>NAD(+)</name>
            <dbReference type="ChEBI" id="CHEBI:57540"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="4">
        <location>
            <position position="274"/>
        </location>
        <ligand>
            <name>NAD(+)</name>
            <dbReference type="ChEBI" id="CHEBI:57540"/>
        </ligand>
    </feature>
    <feature type="site" description="Important for catalytic activity" evidence="3">
        <location>
            <position position="140"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00009463"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023027"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="PIRSR" id="PIRSR000105-1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="PIRSR" id="PIRSR000105-2"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="PIRSR" id="PIRSR000105-3"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="Pfam" id="PF00725"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="Pfam" id="PF02737"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="ABX33843.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="282" mass="29791" checksum="37EE10A2C56B1B1C" modified="2008-01-15" version="1">MAIQTVGIIGAGTMGNGIAQACAVSGIDVVMVDISEAAVQKGVATVSGSLDRLIKKEKLTEAEKTAALARIKTSTDYAALKGAQLVIEAATENYELKVKILKQLDALLDADVIVATNTSSISITQLAAVTGRADKFIGMHFFNPVPMMALVEIIVGLQTSDETHATVKELSERLGKSPITVKNAPGFVVNRILVPMINEAFFVLAEGLASAEDIDAGMKLGCNQPIGPLALADMIGLDVCLAVMEVYLKEFGDSKYRACPLLKEMVAAGRLGRKTGRGVYSY</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="60" xmlns="http://uniprot.org/uniprot">
    <accession>A9BUM0</accession>
    <name>A9BUM0_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Ribonuclease II</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Daci_1484</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="4" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX34128.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012203414.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_1484"/>
    <dbReference type="PRIDE" id="A9BUM0"/>
    <dbReference type="EnsemblBacteria" id="ABX34128">
        <property type="protein sequence ID" value="ABX34128"/>
        <property type="gene ID" value="Daci_1484"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_1484"/>
    <dbReference type="eggNOG" id="COG0557">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_438650_0_0_4"/>
    <dbReference type="OMA" id="YWCLRWL"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004540">
        <property type="term" value="F:ribonuclease activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003723">
        <property type="term" value="F:RNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012340">
        <property type="entry name" value="NA-bd_OB-fold"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001900">
        <property type="entry name" value="RNase_II/R"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00773">
        <property type="entry name" value="RNB"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SMART" id="SM00955">
        <property type="entry name" value="RNB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50249">
        <property type="entry name" value="SSF50249"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="RNB" evidence="2">
        <location>
            <begin position="235"/>
            <end position="531"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="653"/>
            <end position="692"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="SMART" id="SM00955"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ABX34128.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="692" mass="75219" checksum="7929255FDDED95F3" modified="2008-01-15" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="61" xmlns="http://uniprot.org/uniprot">
    <accession>A9BUP6</accession>
    <name>A9BUP6_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="3">NLP/P60 protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Daci_1510</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="4" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the peptidase C40 family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX34154.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012203440.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_1510"/>
    <dbReference type="MEROPS" id="C40.006"/>
    <dbReference type="PRIDE" id="A9BUP6"/>
    <dbReference type="EnsemblBacteria" id="ABX34154">
        <property type="protein sequence ID" value="ABX34154"/>
        <property type="gene ID" value="Daci_1510"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_1510"/>
    <dbReference type="eggNOG" id="COG0791">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_016043_7_0_4"/>
    <dbReference type="OMA" id="REMIVMR"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000064">
        <property type="entry name" value="NLP_P60_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038765">
        <property type="entry name" value="Papain-like_cys_pep_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00877">
        <property type="entry name" value="NLPC_P60"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54001">
        <property type="entry name" value="SSF54001"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51935">
        <property type="entry name" value="NLPC_P60"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="NlpC/P60" evidence="2">
        <location>
            <begin position="59"/>
            <end position="183"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00007074"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS51935"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ABX34154.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="184" mass="19554" checksum="A94E887ECCFD3F5D" modified="2008-01-15" version="1">MKAGVSTSLAVSPVTGARLSRRDWGLLAAAVLLAGCSSAPRKGSGPAPVPSPQALNLDGELREALLARTMLVVNTPYTYGGNSPEGGFDCSGLIQWAVGGITENRLPRTTAQWAQFSNPVGSRSLQRGDFVFFNTLGARYSHMGIFVGNGQFVHAPSSGGTVQRVRMDNTYFAKRFTEARSIFA</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="63" xmlns="http://uniprot.org/uniprot">
    <accession>A9BUX7</accession>
    <name>A9BUX7_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">CutA1 divalent ion tolerance protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_1797</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the CutA family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX34439.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012203724.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_1797"/>
    <dbReference type="PRIDE" id="A9BUX7"/>
    <dbReference type="EnsemblBacteria" id="ABX34439">
        <property type="protein sequence ID" value="ABX34439"/>
        <property type="gene ID" value="Daci_1797"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_1797"/>
    <dbReference type="eggNOG" id="COG1324">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_098807_2_0_4"/>
    <dbReference type="OMA" id="VYTTFPD"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0010038">
        <property type="term" value="P:response to metal ion"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.70.120">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004323">
        <property type="entry name" value="Ion_tolerance_CutA"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011322">
        <property type="entry name" value="N-reg_PII-like_a/b"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015867">
        <property type="entry name" value="N-reg_PII/ATP_PRibTrfase_C"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR23419">
        <property type="entry name" value="PTHR23419"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03091">
        <property type="entry name" value="CutA1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54913">
        <property type="entry name" value="SSF54913"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00010169"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX34439.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="132" mass="14525" checksum="F436D94D8DF564E6" modified="2008-01-15" version="1">MTSAKNPASTWSTLCVVATTVPSAEEAAHLARSLVQQQAAACVQVEPITSHYVWEGEMHATPEWRLVCKTLPDVLERLARLLRAGHSYSVPQITMRTERCMADYAQWLRSQVSTRDVADTAEMAAAPRITAA</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="76" xmlns="http://uniprot.org/uniprot">
    <accession>A9BUY8</accession>
    <name>A9BUY8_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Histidine kinase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Daci_1808</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="4" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX34450.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_1808"/>
    <dbReference type="PRIDE" id="A9BUY8"/>
    <dbReference type="EnsemblBacteria" id="ABX34450">
        <property type="protein sequence ID" value="ABX34450"/>
        <property type="gene ID" value="Daci_1808"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_1808"/>
    <dbReference type="eggNOG" id="COG4585">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="eggNOG" id="COG5278">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_592959_0_0_4"/>
    <dbReference type="OMA" id="NHLQQVR"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000155">
        <property type="term" value="F:phosphorelay sensor kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046983">
        <property type="term" value="F:protein dimerization activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.565.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007891">
        <property type="entry name" value="CHASE3"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003594">
        <property type="entry name" value="HATPase_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036890">
        <property type="entry name" value="HATPase_C_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005467">
        <property type="entry name" value="His_kinase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011712">
        <property type="entry name" value="Sig_transdc_His_kin_sub3_dim/P"/>
    </dbReference>
    <dbReference type="Pfam" id="PF05227">
        <property type="entry name" value="CHASE3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02518">
        <property type="entry name" value="HATPase_c"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07730">
        <property type="entry name" value="HisKA_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00387">
        <property type="entry name" value="HATPase_c"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55874">
        <property type="entry name" value="SSF55874"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50109">
        <property type="entry name" value="HIS_KIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-0418">Kinase</keyword>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0808">Transferase</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="183"/>
            <end position="203"/>
        </location>
    </feature>
    <feature type="domain" description="Histidine kinase" evidence="2">
        <location>
            <begin position="255"/>
            <end position="448"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS50109"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ABX34450.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="461" mass="51547" checksum="408FA47E444ECC73" modified="2008-01-15" version="1">MLMRWINFRRIAISLAFAIVAAVLLVSINEASYKRSTKALEAMTQTQNTRSEISQLLRLMLDAETGLRGYLLTGEERYLEPYSKAITAINYNMDELRQIFIYDPQELAIFTPLARQVERKMSEMELSLRLYRQGNEEAWRFVMFTDVGMENMDAIRDYTGKLLSGIDQRSAKNLQDIEHTLSLSRIGIATVTALGVLGFFMYLRQAHALQQAHQREQEIQRDERNRLEALVRERTATLTELANHLQQVREDERGHLARELHDELGSLLTAAKLDVARLKSKIDLSAPDVGERVSHLVETLNSGIALKRRIIEDLRPSSLSNLGLTTALEILAREFGERSGIEVTANLEQVELPESTQLTVYRIVQESLTNIGKYAKASHVLVSVHNYPTYVTVQIQDDGEGFETSAMRPNSHGLAGMRHRVEAAGGRLTVSSELGKGTAISAVIPLAPISTDKSAGTVATA</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="79" xmlns="http://uniprot.org/uniprot">
    <accession>A9BV05</accession>
    <name>A9BV05_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Cyclic nucleotide-binding protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Daci_1825</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="4" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX34467.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_1825"/>
    <dbReference type="PRIDE" id="A9BV05"/>
    <dbReference type="EnsemblBacteria" id="ABX34467">
        <property type="protein sequence ID" value="ABX34467"/>
        <property type="gene ID" value="Daci_1825"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_1825"/>
    <dbReference type="eggNOG" id="COG0664">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_075053_3_5_4"/>
    <dbReference type="OMA" id="FLEYCHI"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006355">
        <property type="term" value="P:regulation of transcription, DNA-templated"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd00038">
        <property type="entry name" value="CAP_ED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.120.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018490">
        <property type="entry name" value="cNMP-bd-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000595">
        <property type="entry name" value="cNMP-bd_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012318">
        <property type="entry name" value="HTH_CRP"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014710">
        <property type="entry name" value="RmlC-like_jellyroll"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036390">
        <property type="entry name" value="WH_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13545">
        <property type="entry name" value="HTH_Crp_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00100">
        <property type="entry name" value="cNMP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46785">
        <property type="entry name" value="SSF46785"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51206">
        <property type="entry name" value="SSF51206"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51063">
        <property type="entry name" value="HTH_CRP_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HTH crp-type" evidence="2">
        <location>
            <begin position="187"/>
            <end position="259"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS51063"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ABX34467.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="269" mass="29481" checksum="95D5E0C7795D0D0A" modified="2008-01-15" version="1">MRSRYAVLPATDDRARTGPADALQRCCTMSGSLQTSPLLPAVAWQGLRQVHVLQSLTDERLAELAAQCRWQHLALHQTLEGAYTDQRLYMLVQGGLRVSSYAPNGRGLTLGEIAQGVFFGGLPQQQVGCTAMPLVVEAGVPSLIASLAHEDVEALLMNEPQVLRAFIGRLSDLAVALARRMVDLGTLSVRSRLHTQLLERAERAGIDQGQALLAPAPRQTDLALMLGSSREEVAREMSRLVRLGLLRREGRNLRICHVEGLRVLLEEAR</sequence>
</entry>
<entry dataset="Swiss-Prot" created="2009-04-14" modified="2022-08-03" version="79" xmlns="http://uniprot.org/uniprot">
    <accession>A9BV13</accession>
    <name>PAND_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Aspartate 1-decarboxylase</fullName>
            <ecNumber evidence="1">4.1.1.11</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="1">Aspartate alpha-decarboxylase</fullName>
        </alternativeName>
        <component>
            <recommendedName>
                <fullName evidence="1">Aspartate 1-decarboxylase beta chain</fullName>
            </recommendedName>
        </component>
        <component>
            <recommendedName>
                <fullName evidence="1">Aspartate 1-decarboxylase alpha chain</fullName>
            </recommendedName>
        </component>
    </protein>
    <gene>
        <name evidence="1" type="primary">panD</name>
        <name type="ordered locus">Daci_1835</name>
    </gene>
    <organism>
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference key="1">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain>DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="1">Catalyzes the pyruvoyl-dependent decarboxylation of aspartate to produce beta-alanine.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>H(+) + L-aspartate = beta-alanine + CO2</text>
            <dbReference type="Rhea" id="RHEA:19497"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:16526"/>
            <dbReference type="ChEBI" id="CHEBI:29991"/>
            <dbReference type="ChEBI" id="CHEBI:57966"/>
            <dbReference type="EC" id="4.1.1.11"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>pyruvate</name>
            <dbReference type="ChEBI" id="CHEBI:15361"/>
        </cofactor>
        <text evidence="1">Binds 1 pyruvoyl group covalently per subunit.</text>
    </comment>
    <comment type="pathway">
        <text evidence="1">Cofactor biosynthesis; (R)-pantothenate biosynthesis; beta-alanine from L-aspartate: step 1/1.</text>
    </comment>
    <comment type="subunit">
        <text evidence="1">Heterooctamer of four alpha and four beta subunits.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="PTM">
        <text evidence="1">Is synthesized initially as an inactive proenzyme, which is activated by self-cleavage at a specific serine bond to produce a beta-subunit with a hydroxyl group at its C-terminus and an alpha-subunit with a pyruvoyl group at its N-terminus.</text>
    </comment>
    <comment type="similarity">
        <text evidence="1">Belongs to the PanD family.</text>
    </comment>
    <dbReference type="EC" id="4.1.1.11" evidence="1"/>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX34475.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012203760.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A9BV13"/>
    <dbReference type="SMR" id="A9BV13"/>
    <dbReference type="STRING" id="398578.Daci_1835"/>
    <dbReference type="PRIDE" id="A9BV13"/>
    <dbReference type="EnsemblBacteria" id="ABX34475">
        <property type="protein sequence ID" value="ABX34475"/>
        <property type="gene ID" value="Daci_1835"/>
    </dbReference>
    <dbReference type="GeneID" id="60686263"/>
    <dbReference type="KEGG" id="dac:Daci_1835"/>
    <dbReference type="eggNOG" id="COG0853">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_115305_2_0_4"/>
    <dbReference type="OMA" id="MLYSKIH"/>
    <dbReference type="UniPathway" id="UPA00028">
        <property type="reaction ID" value="UER00002"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004068">
        <property type="term" value="F:aspartate 1-decarboxylase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006523">
        <property type="term" value="P:alanine biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015940">
        <property type="term" value="P:pantothenate biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd06919">
        <property type="entry name" value="Asp_decarbox"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00446">
        <property type="entry name" value="PanD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009010">
        <property type="entry name" value="Asp_de-COase-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003190">
        <property type="entry name" value="Asp_decarbox"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR21012">
        <property type="entry name" value="PTHR21012"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02261">
        <property type="entry name" value="Asp_decarbox"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF006246">
        <property type="entry name" value="Asp_decarbox"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50692">
        <property type="entry name" value="SSF50692"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00223">
        <property type="entry name" value="panD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword id="KW-0068">Autocatalytic cleavage</keyword>
    <keyword id="KW-0963">Cytoplasm</keyword>
    <keyword id="KW-0210">Decarboxylase</keyword>
    <keyword id="KW-0456">Lyase</keyword>
    <keyword id="KW-0566">Pantothenate biosynthesis</keyword>
    <keyword id="KW-0670">Pyruvate</keyword>
    <keyword id="KW-1185">Reference proteome</keyword>
    <keyword id="KW-0704">Schiff base</keyword>
    <keyword id="KW-0865">Zymogen</keyword>
    <feature type="chain" id="PRO_1000191976" description="Aspartate 1-decarboxylase beta chain" evidence="1">
        <location>
            <begin position="1"/>
            <end position="24"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_1000191977" description="Aspartate 1-decarboxylase alpha chain" evidence="1">
        <location>
            <begin position="25"/>
            <end position="126"/>
        </location>
    </feature>
    <feature type="active site" description="Schiff-base intermediate with substrate; via pyruvic acid" evidence="1">
        <location>
            <position position="25"/>
        </location>
    </feature>
    <feature type="active site" description="Proton donor" evidence="1">
        <location>
            <position position="58"/>
        </location>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <position position="57"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <begin position="73"/>
            <end position="75"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="modified residue" description="Pyruvic acid (Ser)" evidence="1">
        <location>
            <position position="25"/>
        </location>
    </feature>
    <evidence type="ECO:0000255" key="1">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00446"/>
        </source>
    </evidence>
    <sequence length="126" mass="14118" checksum="542F1F6248D3753F" modified="2008-01-15" version="1" precursor="true">MFRTLLKSKIHRVKTTQCELHYEGSCAIDEDLLDAANIVENEQVHIWNIDNGERFVTYAIKGQRGSGMISVNGSAARRAAVGDLLIIASFAQVHETDVATHQPQLVFVDDANRQVELRHHVPTQQL</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-05-25" version="76" xmlns="http://uniprot.org/uniprot">
    <accession>A9BV66</accession>
    <name>A9BV66_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Short-chain dehydrogenase/reductase SDR</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Daci_2090</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="2" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX34730.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012204013.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_2090"/>
    <dbReference type="EnsemblBacteria" id="ABX34730">
        <property type="protein sequence ID" value="ABX34730"/>
        <property type="gene ID" value="Daci_2090"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_2090"/>
    <dbReference type="eggNOG" id="COG1028">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_010194_1_0_4"/>
    <dbReference type="OMA" id="DGPLDHY"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016491">
        <property type="term" value="F:oxidoreductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036291">
        <property type="entry name" value="NAD(P)-bd_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020904">
        <property type="entry name" value="Sc_DH/Rdtase_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002347">
        <property type="entry name" value="SDR_fam"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00081">
        <property type="entry name" value="GDHRDH"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00080">
        <property type="entry name" value="SDRFAMILY"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51735">
        <property type="entry name" value="SSF51735"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00061">
        <property type="entry name" value="ADH_SHORT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ABX34730.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="258" mass="26735" checksum="D3786DB2353AA81C" modified="2008-01-15" version="1">MTPDTPSNKVALVTGAASGIGQALAVAYAQAGIAVAGSYYPRDPHDPGQTLELVERAGGRCVMEAVDVGDAEQVEHLARVAVDRFGRLDFAVANAGLLRQAALTEMSDAQWLEVINIDLGGVMRTFRASARHMAAGGAMVAVSSIAGGVYGWEQHAHYAAAKAGVPGLCRAVAMELAPRGIRCNAVIPGLIETPQSLDPVNSLGPEGLAQAARGIPLGRVGQAREIAALIRFLTSEEASYITGQSIIADGGLTVRWPS</sequence>
</entry>
<entry dataset="Swiss-Prot" created="2009-02-10" modified="2022-08-03" version="72" xmlns="http://uniprot.org/uniprot">
    <accession>A9BVE1</accession>
    <name>KYNB_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Kynurenine formamidase</fullName>
            <shortName evidence="1">KFA</shortName>
            <shortName evidence="1">KFase</shortName>
            <ecNumber evidence="1">3.5.1.9</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="1">Arylformamidase</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="1">N-formylkynurenine formamidase</fullName>
            <shortName evidence="1">FKF</shortName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="1" type="primary">kynB</name>
        <name type="ordered locus">Daci_2165</name>
    </gene>
    <organism>
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference key="1">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain>DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="1">Catalyzes the hydrolysis of N-formyl-L-kynurenine to L-kynurenine, the second step in the kynurenine pathway of tryptophan degradation.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>H2O + N-formyl-L-kynurenine = formate + H(+) + L-kynurenine</text>
            <dbReference type="Rhea" id="RHEA:13009"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:15740"/>
            <dbReference type="ChEBI" id="CHEBI:57959"/>
            <dbReference type="ChEBI" id="CHEBI:58629"/>
            <dbReference type="EC" id="3.5.1.9"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </cofactor>
        <text evidence="1">Binds 2 zinc ions per subunit.</text>
    </comment>
    <comment type="pathway">
        <text evidence="1">Amino-acid degradation; L-tryptophan degradation via kynurenine pathway; L-kynurenine from L-tryptophan: step 2/2.</text>
    </comment>
    <comment type="subunit">
        <text evidence="1">Homodimer.</text>
    </comment>
    <comment type="similarity">
        <text evidence="1">Belongs to the Cyclase 1 superfamily. KynB family.</text>
    </comment>
    <dbReference type="EC" id="3.5.1.9" evidence="1"/>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX34805.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012204088.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A9BVE1"/>
    <dbReference type="SMR" id="A9BVE1"/>
    <dbReference type="STRING" id="398578.Daci_2165"/>
    <dbReference type="PRIDE" id="A9BVE1"/>
    <dbReference type="EnsemblBacteria" id="ABX34805">
        <property type="protein sequence ID" value="ABX34805"/>
        <property type="gene ID" value="Daci_2165"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_2165"/>
    <dbReference type="eggNOG" id="COG1878">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_030671_3_1_4"/>
    <dbReference type="OMA" id="GHPTHKT"/>
    <dbReference type="UniPathway" id="UPA00333">
        <property type="reaction ID" value="UER00454"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004061">
        <property type="term" value="F:arylformamidase activity"/>
        <property type="evidence" value="ECO:0000250"/>
        <property type="project" value="UniProtKB"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004328">
        <property type="term" value="F:formamidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008270">
        <property type="term" value="F:zinc ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043420">
        <property type="term" value="P:anthranilate metabolic process"/>
        <property type="evidence" value="ECO:0000250"/>
        <property type="project" value="UniProtKB"/>
    </dbReference>
    <dbReference type="GO" id="GO:0019441">
        <property type="term" value="P:tryptophan catabolic process to kynurenine"/>
        <property type="evidence" value="ECO:0000250"/>
        <property type="project" value="UniProtKB"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.50.30.50">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01969">
        <property type="entry name" value="KynB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007325">
        <property type="entry name" value="KFase/CYL"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037175">
        <property type="entry name" value="KFase_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017484">
        <property type="entry name" value="Kynurenine_formamidase_bac"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR31118">
        <property type="entry name" value="PTHR31118"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04199">
        <property type="entry name" value="Cyclase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF102198">
        <property type="entry name" value="SSF102198"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR03035">
        <property type="entry name" value="trp_arylform"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword id="KW-0378">Hydrolase</keyword>
    <keyword id="KW-0479">Metal-binding</keyword>
    <keyword id="KW-1185">Reference proteome</keyword>
    <keyword id="KW-0823">Tryptophan catabolism</keyword>
    <keyword id="KW-0862">Zinc</keyword>
    <feature type="chain" id="PRO_0000362122" description="Kynurenine formamidase">
        <location>
            <begin position="1"/>
            <end position="209"/>
        </location>
    </feature>
    <feature type="active site" description="Proton donor/acceptor" evidence="1">
        <location>
            <position position="59"/>
        </location>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <position position="19"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <position position="49"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
            <label>1</label>
        </ligand>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <position position="53"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
            <label>1</label>
        </ligand>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <position position="55"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
            <label>1</label>
        </ligand>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <position position="55"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
            <label>2</label>
        </ligand>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <position position="160"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
            <label>2</label>
        </ligand>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <position position="172"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
            <label>1</label>
        </ligand>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <position position="172"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
            <label>2</label>
        </ligand>
    </feature>
    <evidence type="ECO:0000255" key="1">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01969"/>
        </source>
    </evidence>
    <sequence length="209" mass="22311" checksum="2619045651B71857" modified="2008-01-15" version="1">MTRRLWDISPAVQAASPVFPGDTAYSQQWCATIGPGCPVNVSAITLSPHVGAHADAPLHYDADGASIGNVDLDAFLGPCRVIHAIGKGPLVEWEHIAHAVEHLPARVLVRTYGRAPTTWDQELAAYAPATVERLADLGVKLIGIDTASIDPASSKSLDSHQVIRRRGLRVLENLVLDEVAEGDYELIALPLKLVEADASPVRAVLRALA</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="81" xmlns="http://uniprot.org/uniprot">
    <accession>A9BVE7</accession>
    <name>A9BVE7_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="7">Nitrate ABC transporter, inner membrane subunit</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ordered locus">Daci_2376</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="8" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="5">Cell membrane</location>
            <topology evidence="5">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="5">Belongs to the binding-protein-dependent transport system permease family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX35014.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012204296.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_2376"/>
    <dbReference type="PRIDE" id="A9BVE7"/>
    <dbReference type="EnsemblBacteria" id="ABX35014">
        <property type="protein sequence ID" value="ABX35014"/>
        <property type="gene ID" value="Daci_2376"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_2376"/>
    <dbReference type="eggNOG" id="COG0600">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_046113_1_1_4"/>
    <dbReference type="OMA" id="CSIWPMI"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015112">
        <property type="term" value="F:nitrate transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd06261">
        <property type="entry name" value="TM_PBP2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.3720.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000515">
        <property type="entry name" value="MetI-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035906">
        <property type="entry name" value="MetI-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005889">
        <property type="entry name" value="NtrB"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00528">
        <property type="entry name" value="BPD_transp_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF161098">
        <property type="entry name" value="SSF161098"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01183">
        <property type="entry name" value="ntrB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50928">
        <property type="entry name" value="ABC_TM1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4 5" id="KW-0472">Membrane</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 5" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="3 5" id="KW-1133">Transmembrane helix</keyword>
    <keyword evidence="1 5" id="KW-0813">Transport</keyword>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="57"/>
            <end position="79"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="126"/>
            <end position="145"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="157"/>
            <end position="177"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="183"/>
            <end position="204"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="225"/>
            <end position="244"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="250"/>
            <end position="270"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="282"/>
            <end position="308"/>
        </location>
    </feature>
    <feature type="domain" description="ABC transmembrane type-1" evidence="6">
        <location>
            <begin position="119"/>
            <end position="303"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022448"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="RuleBase" id="RU363032"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="PROSITE" id="PS50928"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="ABX35014.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="313" mass="33113" checksum="E046B6EA0CDCCFEA" modified="2008-01-15" version="1">MVSAVFHFPAESAAAPAAASTPISAQASGPAAPAAPAAQAQARAPAAPRDWAALSRAFWLAVLPPLCGLGLLVGVWSLVAAGSGQSIPGPLATWHQAVEIFSDPFYRNGPNDQGVGWNVLASLQRVAVGFGLAALVGIPAGFVIGRFNFLSRMFNPLISLLRPVSPLAWLPIGLLVFKGANPAAIWTIFICSIWPMLINTAVGVQRVPQDYMNVARVLNLSEWKIATTILFPAVLPYMLTGVRLAVGTAWLVIVAAEMLTGGVGIGFWVWDEWNNLNVKNIIIAIFVIGIVGLLLEMALVKLATAFTFEEVKA</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="48" xmlns="http://uniprot.org/uniprot">
    <accession>A9BVJ2</accession>
    <name>A9BVJ2_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Daci_2421</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="2" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX35059.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_2421"/>
    <dbReference type="PRIDE" id="A9BVJ2"/>
    <dbReference type="EnsemblBacteria" id="ABX35059">
        <property type="protein sequence ID" value="ABX35059"/>
        <property type="gene ID" value="Daci_2421"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_2421"/>
    <dbReference type="eggNOG" id="COG3023">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_2329109_0_0_4"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ABX35059.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="98" mass="10633" checksum="E1E09396C510E4E5" modified="2008-01-15" version="1">MPAAIQRNPGTHMLVEINKDGMLIHARVKNARSPAIERGKRTAAITGIVVHQTDANTARSSLNSYRNPKANGAHLLIDETHLHVHSLDTFEPKAPGAL</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="94" xmlns="http://uniprot.org/uniprot">
    <accession>A9BVP2</accession>
    <name>A9BVP2_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="5">Glutamate--cysteine ligase</fullName>
            <ecNumber evidence="5">6.3.2.2</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="5">Gamma-ECS</fullName>
            <shortName evidence="5">GCS</shortName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="5">Gamma-glutamylcysteine synthetase</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="5" type="primary">gshA</name>
        <name evidence="8" type="ordered locus">Daci_2471</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="9" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="4 5 6">
            <text>ATP + L-cysteine + L-glutamate = ADP + gamma-L-glutamyl-L-cysteine + H(+) + phosphate</text>
            <dbReference type="Rhea" id="RHEA:13285"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:29985"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:35235"/>
            <dbReference type="ChEBI" id="CHEBI:43474"/>
            <dbReference type="ChEBI" id="CHEBI:58173"/>
            <dbReference type="ChEBI" id="CHEBI:456216"/>
            <dbReference type="EC" id="6.3.2.2"/>
        </reaction>
    </comment>
    <comment type="pathway">
        <text evidence="1 5 6">Sulfur metabolism; glutathione biosynthesis; glutathione from L-cysteine and L-glutamate: step 1/2.</text>
    </comment>
    <comment type="similarity">
        <text evidence="2 5">Belongs to the glutamate--cysteine ligase type 1 family. Type 1 subfamily.</text>
    </comment>
    <dbReference type="EC" id="6.3.2.2" evidence="5"/>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX35109.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012204390.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_2471"/>
    <dbReference type="PRIDE" id="A9BVP2"/>
    <dbReference type="EnsemblBacteria" id="ABX35109">
        <property type="protein sequence ID" value="ABX35109"/>
        <property type="gene ID" value="Daci_2471"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_2471"/>
    <dbReference type="eggNOG" id="COG2918">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_020728_3_0_4"/>
    <dbReference type="OMA" id="RYSWLLM"/>
    <dbReference type="UniPathway" id="UPA00142">
        <property type="reaction ID" value="UER00209"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004357">
        <property type="term" value="F:glutamate-cysteine ligase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006750">
        <property type="term" value="P:glutathione biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00578">
        <property type="entry name" value="Glu_cys_ligase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014746">
        <property type="entry name" value="Gln_synth/guanido_kin_cat_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007370">
        <property type="entry name" value="Glu_cys_ligase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006334">
        <property type="entry name" value="Glut_cys_ligase"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR38761">
        <property type="entry name" value="PTHR38761"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04262">
        <property type="entry name" value="Glu_cys_ligase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55931">
        <property type="entry name" value="SSF55931"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01434">
        <property type="entry name" value="glu_cys_ligase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="3 5" id="KW-0317">Glutathione biosynthesis</keyword>
    <keyword evidence="5 8" id="KW-0436">Ligase</keyword>
    <keyword evidence="5" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Glu_cys_ligase" evidence="7">
        <location>
            <begin position="14"/>
            <end position="362"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00005006"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00008772"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022684"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00029283"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00578"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="RuleBase" id="RU004391"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="Pfam" id="PF04262"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="ABX35109.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="509" mass="57059" checksum="271986C6DEC49520" modified="2008-01-15" version="1">MKTSQASMAVPDPQRLKGIRRGIEKEGLRVLPSGSLALTPHPLALGSALTHPHITTDYSESQIELITGARLGVQECLDELVQIHQFVLRSLRDAGGEMLWSSSMPCQLPTDETIPLARYGSSHSGRSKSVYRMGLGHRYGRRMQTISGIHYNWSLPGVTSDQYFSLIRNFRRHAFVLLYLYGASPALCPCFVEGREHGLKPLGNTGQALYLPHATSLRMGRLGYQSDAQASINVSYNGLEGYANSLHEALTHPYPAYEMLGVRNPGGDYNQLGTGLLQIENEFYGTIRPKRTVSRGERPLHALRERGVEYVEVRLMDLDPFEDVGIAAPTMRMLDVFLLHCLNADSPPDTPAEIAELKHNQHLTAERGREPGLQLVRAGREVPLRDWAHEVLDQCRPYAQALDSTHGTHDYSAALAQALERLEHPERTPSAHVLGELTGEYGNSFSRFTLARSEKARDSLLALPWSQAQQQRFEQWSAQSVQDQRDIEAADTLSFEEWRLRYMSPENLR</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="61" xmlns="http://uniprot.org/uniprot">
    <accession>A9BVW2</accession>
    <name>A9BVW2_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="6">Lysine exporter protein (LYSE/YGGA)</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ordered locus">Daci_2837</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="7" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX35475.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012204685.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_2837"/>
    <dbReference type="PRIDE" id="A9BVW2"/>
    <dbReference type="EnsemblBacteria" id="ABX35475">
        <property type="protein sequence ID" value="ABX35475"/>
        <property type="gene ID" value="Daci_2837"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_2837"/>
    <dbReference type="eggNOG" id="COG1279">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_087840_0_0_4"/>
    <dbReference type="OMA" id="FARPRAW"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006865">
        <property type="term" value="P:amino acid transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001123">
        <property type="entry name" value="LeuE-type"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30086">
        <property type="entry name" value="PTHR30086"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01810">
        <property type="entry name" value="LysE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="4 5" id="KW-0472">Membrane</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 5" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="3 5" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="12"/>
            <end position="32"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="44"/>
            <end position="67"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="73"/>
            <end position="94"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="115"/>
            <end position="134"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="154"/>
            <end position="175"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="187"/>
            <end position="207"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="ABX35475.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="216" mass="22856" checksum="D0412BE17177FAC3" modified="2008-01-15" version="1">MWTANVSSSWLAGFTVCLSLIVSIGAQNLYVLRQAVQGQHVRACVAWCVVSDVVLIGLGVAGMARLLGDNPDLARYLTLGGALFLLAYGLIALWRMAMAPDAQLAASGGQLAPRGLLGVVSTLAVITLFNPHVYLDTVLLMGSIGARQEGVLKWVYVVGAASASLSWFVALAFAGRRMKRLFEKPQAWRVLDGLTGVMMLALAWWVAGSALAPAVG</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="83" xmlns="http://uniprot.org/uniprot">
    <accession>A9BVZ3</accession>
    <name>A9BVZ3_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Alcohol dehydrogenase GroES domain protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ordered locus">Daci_2868</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="5" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="2">
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </cofactor>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the zinc-containing alcohol dehydrogenase family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX35506.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012204716.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_2868"/>
    <dbReference type="PRIDE" id="A9BVZ3"/>
    <dbReference type="EnsemblBacteria" id="ABX35506">
        <property type="protein sequence ID" value="ABX35506"/>
        <property type="gene ID" value="Daci_2868"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_2868"/>
    <dbReference type="eggNOG" id="COG1064">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_026673_20_1_4"/>
    <dbReference type="OMA" id="QYAHNVF"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016616">
        <property type="term" value="F:oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008270">
        <property type="term" value="F:zinc ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013149">
        <property type="entry name" value="ADH-like_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013154">
        <property type="entry name" value="ADH_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002328">
        <property type="entry name" value="ADH_Zn_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011032">
        <property type="entry name" value="GroES-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036291">
        <property type="entry name" value="NAD(P)-bd_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020843">
        <property type="entry name" value="PKS_ER"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08240">
        <property type="entry name" value="ADH_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00107">
        <property type="entry name" value="ADH_zinc_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00829">
        <property type="entry name" value="PKS_ER"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50129">
        <property type="entry name" value="SSF50129"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51735">
        <property type="entry name" value="SSF51735"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00059">
        <property type="entry name" value="ADH_ZINC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="1" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0862">Zinc</keyword>
    <feature type="domain" description="PKS_ER" evidence="3">
        <location>
            <begin position="14"/>
            <end position="338"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023002"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="RuleBase" id="RU361277"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="SMART" id="SM00829"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="ABX35506.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="342" mass="35977" checksum="6B9DC43F013D86B5" modified="2008-01-15" version="1">MNRTMKAAVVREFGKPLTIEEVPVPRPDPGHVLVKIEACGVCHTDLHAAQGDWPVKPNPPFIPGHEGVGYVAAVGAGVTHVKEGDRVGIPWLYTACGHCEHCLGGWETLCEQQKNTGYSVNGGFAQYALADANFVGLLPGSVDLIEIAPVLCAGVTVYKGLKVTDTKPGNWVVISGIGGLGHMAVQYAKAMGLNVAAVDVDDDKLALARRLGAQVTVNAMTTDPAAYLKKEIGGAHGALVTAVSPKAFEQALGMVRRGGTVSLNGLPPGSFPLPIFNMVLSGVTVRGSIVGTRLDLQESLDFAAMGKVKATVSTDRLENINDIFARMHEGKIEGRVVLDLNA</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="71" xmlns="http://uniprot.org/uniprot">
    <accession>A9BWA9</accession>
    <name>A9BWA9_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="4">Oxoglutarate dehydrogenase (succinyl-transferring)</fullName>
            <ecNumber evidence="4">1.2.4.2</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="8" type="ordered locus">Daci_3493</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="9" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="2">E1 component of the 2-oxoglutarate dehydrogenase (OGDH) complex which catalyzes the decarboxylation of 2-oxoglutarate, the first step in the conversion of 2-oxoglutarate to succinyl-CoA and CO(2).</text>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>thiamine diphosphate</name>
            <dbReference type="ChEBI" id="CHEBI:58937"/>
        </cofactor>
    </comment>
    <comment type="similarity">
        <text evidence="3">Belongs to the alpha-ketoglutarate dehydrogenase family.</text>
    </comment>
    <dbReference type="EC" id="1.2.4.2" evidence="4"/>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX36129.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012205329.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_3493"/>
    <dbReference type="PRIDE" id="A9BWA9"/>
    <dbReference type="EnsemblBacteria" id="ABX36129">
        <property type="protein sequence ID" value="ABX36129"/>
        <property type="gene ID" value="Daci_3493"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_3493"/>
    <dbReference type="eggNOG" id="COG0567">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_004709_1_0_4"/>
    <dbReference type="OMA" id="RDSYCRT"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004591">
        <property type="term" value="F:oxoglutarate dehydrogenase (succinyl-transferring) activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030976">
        <property type="term" value="F:thiamine pyrophosphate binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006099">
        <property type="term" value="P:tricarboxylic acid cycle"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.11610">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR032106">
        <property type="entry name" value="2-oxogl_dehyd_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011603">
        <property type="entry name" value="2oxoglutarate_DH_E1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001017">
        <property type="entry name" value="DH_E1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR031717">
        <property type="entry name" value="KGD_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR042179">
        <property type="entry name" value="KGD_C_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029061">
        <property type="entry name" value="THDP-binding"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005475">
        <property type="entry name" value="Transketolase-like_Pyr-bd"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR23152">
        <property type="entry name" value="PTHR23152"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF16078">
        <property type="entry name" value="2-oxogl_dehyd_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00676">
        <property type="entry name" value="E1_dh"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF16870">
        <property type="entry name" value="OxoGdeHyase_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02779">
        <property type="entry name" value="Transket_pyr"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF000157">
        <property type="entry name" value="Oxoglu_dh_E1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00861">
        <property type="entry name" value="Transket_pyr"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52518">
        <property type="entry name" value="SSF52518"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00239">
        <property type="entry name" value="2oxo_dh_E1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5 8" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="6" id="KW-0786">Thiamine pyrophosphate</keyword>
    <feature type="domain" description="Transket_pyr" evidence="7">
        <location>
            <begin position="603"/>
            <end position="800"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001964"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00003906"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00006936"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00012280"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023002"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023052"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="SMART" id="SM00861"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="ABX36129.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="959" mass="106442" checksum="7B0A7B9C5CA04086" modified="2008-01-15" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="87" xmlns="http://uniprot.org/uniprot">
    <accession>A9BWB9</accession>
    <name>A9BWB9_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="12">ATP-dependent Clp protease, ATP-binding subunit clpA</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="12" type="ordered locus">Daci_3503</name>
    </gene>
    <organism evidence="12 13">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="12 13" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="13">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="13" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="13">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="7">Part of a stress-induced multi-chaperone system, it is involved in the recovery of the cell from heat-induced damage, in cooperation with DnaK, DnaJ and GrpE. Acts before DnaK, in the processing of protein aggregates. Protein binding stimulates the ATPase activity; ATP hydrolysis unfolds the denatured protein aggregates, which probably helps expose new hydrophobic binding sites on the surface of ClpB-bound aggregates, contributing to the solubilization and refolding of denatured protein aggregates by DnaK.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2 9">Belongs to the ClpA/ClpB family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX36139.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012205339.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_3503"/>
    <dbReference type="PRIDE" id="A9BWB9"/>
    <dbReference type="EnsemblBacteria" id="ABX36139">
        <property type="protein sequence ID" value="ABX36139"/>
        <property type="gene ID" value="Daci_3503"/>
    </dbReference>
    <dbReference type="GeneID" id="60687729"/>
    <dbReference type="KEGG" id="dac:Daci_3503"/>
    <dbReference type="eggNOG" id="COG0542">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_005070_4_2_4"/>
    <dbReference type="OMA" id="GRVIQEH"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016887">
        <property type="term" value="F:ATP hydrolysis activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008233">
        <property type="term" value="F:peptidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043335">
        <property type="term" value="P:protein unfolding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006508">
        <property type="term" value="P:proteolysis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.1780.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003593">
        <property type="entry name" value="AAA+_ATPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003959">
        <property type="entry name" value="ATPase_AAA_core"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019489">
        <property type="entry name" value="Clp_ATPase_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036628">
        <property type="entry name" value="Clp_N_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004176">
        <property type="entry name" value="Clp_R_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013461">
        <property type="entry name" value="ClpA"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001270">
        <property type="entry name" value="ClpA/B"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018368">
        <property type="entry name" value="ClpA/B_CS1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR028299">
        <property type="entry name" value="ClpA/B_CS2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041546">
        <property type="entry name" value="ClpA/ClpB_AAA_lid"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00004">
        <property type="entry name" value="AAA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07724">
        <property type="entry name" value="AAA_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF17871">
        <property type="entry name" value="AAA_lid_9"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02861">
        <property type="entry name" value="Clp_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF10431">
        <property type="entry name" value="ClpB_D2-small"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00300">
        <property type="entry name" value="CLPPROTEASEA"/>
    </dbReference>
    <dbReference type="SMART" id="SM00382">
        <property type="entry name" value="AAA"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SMART" id="SM01086">
        <property type="entry name" value="ClpB_D2-small"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF81923">
        <property type="entry name" value="SSF81923"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR02639">
        <property type="entry name" value="ClpA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51903">
        <property type="entry name" value="CLP_R"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00870">
        <property type="entry name" value="CLPAB_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00871">
        <property type="entry name" value="CLPAB_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5 9 12" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="6 9" id="KW-0143">Chaperone</keyword>
    <keyword evidence="12" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="4 9" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="12" id="KW-0645">Protease</keyword>
    <keyword evidence="13" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 8" id="KW-0677">Repeat</keyword>
    <feature type="domain" description="Clp R" evidence="11">
        <location>
            <begin position="1"/>
            <end position="146"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="10">
        <location>
            <begin position="144"/>
            <end position="172"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="10">
        <location>
            <begin position="750"/>
            <end position="778"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="10">
        <location>
            <begin position="146"/>
            <end position="169"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004496"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00008675"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022737"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023186"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00025613"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU01251"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="RuleBase" id="RU004432"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="11">
        <source>
            <dbReference type="PROSITE" id="PS51903"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="EMBL" id="ABX36139.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="13">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="778" mass="85124" checksum="7BD09A8C4E8CF5E2" modified="2008-01-15" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="78" xmlns="http://uniprot.org/uniprot">
    <accession>A9BWE2</accession>
    <name>A9BWE2_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">dTTP/UTP pyrophosphatase</fullName>
            <shortName evidence="3">dTTPase/UTPase</shortName>
            <ecNumber evidence="3">3.6.1.9</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="3">Nucleoside triphosphate pyrophosphatase</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="3">Nucleotide pyrophosphatase</fullName>
            <shortName evidence="3">Nucleotide PPase</shortName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="4" type="ordered locus">Daci_3526</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="5" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="3">Nucleoside triphosphate pyrophosphatase that hydrolyzes dTTP and UTP. May have a dual role in cell division arrest and in preventing the incorporation of modified nucleotides into cellular nucleic acids.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="3">
            <text>H2O + UTP = diphosphate + H(+) + UMP</text>
            <dbReference type="Rhea" id="RHEA:29395"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:33019"/>
            <dbReference type="ChEBI" id="CHEBI:46398"/>
            <dbReference type="ChEBI" id="CHEBI:57865"/>
            <dbReference type="EC" id="3.6.1.9"/>
        </reaction>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="3">
            <text>dTTP + H2O = diphosphate + dTMP + H(+)</text>
            <dbReference type="Rhea" id="RHEA:28534"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:33019"/>
            <dbReference type="ChEBI" id="CHEBI:37568"/>
            <dbReference type="ChEBI" id="CHEBI:63528"/>
            <dbReference type="EC" id="3.6.1.9"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="3">
            <name>a divalent metal cation</name>
            <dbReference type="ChEBI" id="CHEBI:60240"/>
        </cofactor>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="3">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="3">Belongs to the Maf family. YhdE subfamily.</text>
    </comment>
    <comment type="caution">
        <text evidence="3">Lacks conserved residue(s) required for the propagation of feature annotation.</text>
    </comment>
    <dbReference type="EC" id="3.6.1.9" evidence="3"/>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX36162.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012205362.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_3526"/>
    <dbReference type="PRIDE" id="A9BWE2"/>
    <dbReference type="EnsemblBacteria" id="ABX36162">
        <property type="protein sequence ID" value="ABX36162"/>
        <property type="gene ID" value="Daci_3526"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_3526"/>
    <dbReference type="eggNOG" id="COG0424">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_040416_2_1_4"/>
    <dbReference type="OMA" id="RIDGDFY"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0036218">
        <property type="term" value="F:dTTP diphosphatase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0035529">
        <property type="term" value="F:NADH pyrophosphatase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0036221">
        <property type="term" value="F:UTP diphosphatase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="RHEA"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009117">
        <property type="term" value="P:nucleotide metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd00555">
        <property type="entry name" value="Maf"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.950.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00528">
        <property type="entry name" value="Maf"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029001">
        <property type="entry name" value="ITPase-like_fam"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003697">
        <property type="entry name" value="Maf-like"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43213">
        <property type="entry name" value="PTHR43213"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02545">
        <property type="entry name" value="Maf"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF006305">
        <property type="entry name" value="Maf"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52972">
        <property type="entry name" value="SSF52972"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00172">
        <property type="entry name" value="maf"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="1 3" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="2 3" id="KW-0546">Nucleotide metabolism</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="active site" description="Proton acceptor" evidence="3">
        <location>
            <position position="85"/>
        </location>
    </feature>
    <feature type="site" description="Important for substrate specificity" evidence="3">
        <location>
            <position position="13"/>
        </location>
    </feature>
    <feature type="site" description="Important for substrate specificity" evidence="3">
        <location>
            <position position="86"/>
        </location>
    </feature>
    <feature type="site" description="Important for substrate specificity" evidence="3">
        <location>
            <position position="168"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023080"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00528"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="ABX36162.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="204" mass="21749" checksum="041246ACF3AFDF43" modified="2008-01-15" version="1">MPPFIYLASQSPRRRQLLEQLGVAHELLLPNAEGDIAEDAEAIEAELADEAARDYVQRVTALKLDAAMARHARRALAVAPVLCSDTTVALDGRILGKPADADDARRMLTALAGREHEVLTAVAIQHGARRLAALSVSQVCFSAMSAQQIDAYVASGEPMGKAGAYGIQGRAAAHVQWLHGSYSGIMGLPLFETAALLRELGWAL</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="69" xmlns="http://uniprot.org/uniprot">
    <accession>A9BWK1</accession>
    <name>A9BWK1_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">Aconitate hydratase</fullName>
            <ecNumber evidence="3">4.2.1.3</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="10" type="ordered locus">Daci_3587</name>
    </gene>
    <organism evidence="10 11">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="10 11" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="11">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="11" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="11">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="7">
            <text>citrate = D-threo-isocitrate</text>
            <dbReference type="Rhea" id="RHEA:10336"/>
            <dbReference type="ChEBI" id="CHEBI:15562"/>
            <dbReference type="ChEBI" id="CHEBI:16947"/>
            <dbReference type="EC" id="4.2.1.3"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>[4Fe-4S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:49883"/>
        </cofactor>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the aconitase/IPM isomerase family.</text>
    </comment>
    <dbReference type="EC" id="4.2.1.3" evidence="3"/>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX36221.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012205421.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_3587"/>
    <dbReference type="PRIDE" id="A9BWK1"/>
    <dbReference type="EnsemblBacteria" id="ABX36221">
        <property type="protein sequence ID" value="ABX36221"/>
        <property type="gene ID" value="Daci_3587"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_3587"/>
    <dbReference type="eggNOG" id="COG1048">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_013476_2_1_4"/>
    <dbReference type="OMA" id="GRASYMR"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003994">
        <property type="term" value="F:aconitate hydratase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0047780">
        <property type="term" value="F:citrate dehydratase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051536">
        <property type="term" value="F:iron-sulfur cluster binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0019679">
        <property type="term" value="P:propionate metabolic process, methylcitrate cycle"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.20.19.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.499.10">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.1060.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012708">
        <property type="entry name" value="2Me_IsoCit_deHydtase_FeS-dep"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015931">
        <property type="entry name" value="Acnase/IPM_dHydase_lsu_aba_1/3"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001030">
        <property type="entry name" value="Acoase/IPM_deHydtase_lsu_aba"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015928">
        <property type="entry name" value="Aconitase/3IPM_dehydase_swvl"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006249">
        <property type="entry name" value="Aconitase/IRP2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036008">
        <property type="entry name" value="Aconitase_4Fe-4S_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015932">
        <property type="entry name" value="Aconitase_dom2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000573">
        <property type="entry name" value="AconitaseA/IPMdHydase_ssu_swvl"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11670">
        <property type="entry name" value="PTHR11670"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11670:SF43">
        <property type="entry name" value="PTHR11670:SF43"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00330">
        <property type="entry name" value="Aconitase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00694">
        <property type="entry name" value="Aconitase_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00415">
        <property type="entry name" value="ACONITASE"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53732">
        <property type="entry name" value="SSF53732"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR02333">
        <property type="entry name" value="2met_isocit_dHY"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-0408">Iron</keyword>
    <keyword evidence="6" id="KW-0411">Iron-sulfur</keyword>
    <keyword evidence="4" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="11" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Aconitase" evidence="8">
        <location>
            <begin position="70"/>
            <end position="540"/>
        </location>
    </feature>
    <feature type="domain" description="Aconitase_C" evidence="9">
        <location>
            <begin position="668"/>
            <end position="797"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001966"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00007185"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00012926"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023004"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023014"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023501"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="Pfam" id="PF00330"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="9">
        <source>
            <dbReference type="Pfam" id="PF00694"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="EMBL" id="ABX36221.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="875" mass="95687" checksum="11991CE1AE9EB511" modified="2008-01-15" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="65" xmlns="http://uniprot.org/uniprot">
    <accession>A9BWX8</accession>
    <name>A9BWX8_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="7">Inner-membrane translocator</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ordered locus">Daci_4332</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="8" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX36963.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012206135.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_4332"/>
    <dbReference type="PRIDE" id="A9BWX8"/>
    <dbReference type="EnsemblBacteria" id="ABX36963">
        <property type="protein sequence ID" value="ABX36963"/>
        <property type="gene ID" value="Daci_4332"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_4332"/>
    <dbReference type="eggNOG" id="COG0559">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_039929_3_1_4"/>
    <dbReference type="OMA" id="NMGWFLI"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0022857">
        <property type="term" value="F:transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001851">
        <property type="entry name" value="ABC_transp_permease"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02653">
        <property type="entry name" value="BPD_transp_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="5 6" id="KW-0472">Membrane</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 6" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="4 6" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="20"/>
            <end position="39"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="46"/>
            <end position="63"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="69"/>
            <end position="91"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="103"/>
            <end position="122"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="155"/>
            <end position="175"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="204"/>
            <end position="227"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="282"/>
            <end position="301"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="ABX36963.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="308" mass="32451" checksum="A29DAB9B663B4829" modified="2008-01-15" version="1">MSELLPQLIQQLFNGLSLGAIYALIAIGYTMVYGIIGMINFAHGDIYMIGAYIGLVTLSAIGTTSGLPVWAIIGLMLVVSVFVTGVYGLVVEQVAYKPLRRSPRLVALISAIGMSIFLQNWVALGQGARDMAVPSLLPGALRFGAEGGFEIYVPYSRILIIVVAIVLMVLLTLYIRHSRMGRASRACAQDMHMASLLGIDTNRVISFTFVLGAMLAAVGGVLIALAVGKLNPFIGFLAGIKAFTAAVLGGIGSIPGAMLGGVLLGVAETFAAAYISSEYKDIVAFGLLVLILLFRPTGLLGKPEVEKV</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="55" xmlns="http://uniprot.org/uniprot">
    <accession>A9BX67</accession>
    <name>A9BX67_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="6">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ordered locus">Daci_5514</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="7" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX38143.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_5514"/>
    <dbReference type="PRIDE" id="A9BX67"/>
    <dbReference type="EnsemblBacteria" id="ABX38143">
        <property type="protein sequence ID" value="ABX38143"/>
        <property type="gene ID" value="Daci_5514"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_5514"/>
    <dbReference type="eggNOG" id="COG2373">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="eggNOG" id="COG4733">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="eggNOG" id="COG4932">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="eggNOG" id="COG5272">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_248508_0_0_4"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.40.10">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001434">
        <property type="entry name" value="DUF11"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013783">
        <property type="entry name" value="Ig-like_fold"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008964">
        <property type="entry name" value="Invasin/intimin_cell_adhesion"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR026442">
        <property type="entry name" value="IPTL_CTERM"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR033764">
        <property type="entry name" value="Sdr_B"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01345">
        <property type="entry name" value="DUF11"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF18203">
        <property type="entry name" value="IPTL-CTERM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF17210">
        <property type="entry name" value="SdrD_B"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF49373">
        <property type="entry name" value="SSF49373"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR04174">
        <property type="entry name" value="IPTL_CTERM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0472">Membrane</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <keyword evidence="2" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="2" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="1466"/>
            <end position="1488"/>
        </location>
    </feature>
    <feature type="domain" description="SdrD_B" evidence="4">
        <location>
            <begin position="450"/>
            <end position="530"/>
        </location>
    </feature>
    <feature type="domain" description="DUF11" evidence="3">
        <location>
            <begin position="576"/>
            <end position="686"/>
        </location>
    </feature>
    <feature type="domain" description="IPTL-CTERM" evidence="5">
        <location>
            <begin position="1465"/>
            <end position="1492"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022729"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF01345"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="Pfam" id="PF17210"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="Pfam" id="PF18203"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="ABX38143.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="1504" mass="155718" checksum="A27E5A4DD2C93364" modified="2008-01-15" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="49" xmlns="http://uniprot.org/uniprot">
    <accession>A9BX87</accession>
    <name>A9BX87_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Mammalian cell entry related domain protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_5534</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX38163.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012207332.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_5534"/>
    <dbReference type="PRIDE" id="A9BX87"/>
    <dbReference type="EnsemblBacteria" id="ABX38163">
        <property type="protein sequence ID" value="ABX38163"/>
        <property type="gene ID" value="Daci_5534"/>
    </dbReference>
    <dbReference type="GeneID" id="60689887"/>
    <dbReference type="KEGG" id="dac:Daci_5534"/>
    <dbReference type="eggNOG" id="COG1463">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_107027_0_0_4"/>
    <dbReference type="OMA" id="QYQFPKD"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015914">
        <property type="term" value="P:phospholipid transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR030970">
        <property type="entry name" value="ABC_MlaD"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003399">
        <property type="entry name" value="Mce/MlaD"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02470">
        <property type="entry name" value="MlaD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR04430">
        <property type="entry name" value="OM_asym_MlaD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="MlaD" evidence="1">
        <location>
            <begin position="39"/>
            <end position="116"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF02470"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX38163.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="161" mass="17029" checksum="862C04597F2FB2A9" modified="2008-01-15" version="1">MQQSKSDVWVGLFVLIGAAALVFLALQSANLLSLNFQKTYTLTARFDNIGGLKPKAAVRSAGVVVGRVESITFDDKVFQASVTMALENRYAFPKDSSLKILTSGLLGDQYIGIEAGADDHNLKDGDRVVATQSAVVLENLIGQFLYGKAEQGGSSGAGGKE</sequence>
</entry>
<entry dataset="Swiss-Prot" created="2009-04-14" modified="2022-08-03" version="72" xmlns="http://uniprot.org/uniprot">
    <accession>A9BXA2</accession>
    <name>HIS3_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Phosphoribosyl-AMP cyclohydrolase</fullName>
            <shortName evidence="1">PRA-CH</shortName>
            <ecNumber evidence="1">3.5.4.19</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="1" type="primary">hisI</name>
        <name type="ordered locus">Daci_5549</name>
    </gene>
    <organism>
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference key="1">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain>DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="1">Catalyzes the hydrolysis of the adenine ring of phosphoribosyl-AMP.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>1-(5-phospho-beta-D-ribosyl)-5'-AMP + H2O = 1-(5-phospho-beta-D-ribosyl)-5-[(5-phospho-beta-D-ribosylamino)methylideneamino]imidazole-4-carboxamide</text>
            <dbReference type="Rhea" id="RHEA:20049"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:58435"/>
            <dbReference type="ChEBI" id="CHEBI:59457"/>
            <dbReference type="EC" id="3.5.4.19"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </cofactor>
        <text evidence="1">Binds 1 Mg(2+) ion per subunit.</text>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </cofactor>
        <text evidence="1">Binds 1 zinc ion per subunit.</text>
    </comment>
    <comment type="pathway">
        <text evidence="1">Amino-acid biosynthesis; L-histidine biosynthesis; L-histidine from 5-phospho-alpha-D-ribose 1-diphosphate: step 3/9.</text>
    </comment>
    <comment type="subunit">
        <text evidence="1">Homodimer.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="1">Belongs to the PRA-CH family.</text>
    </comment>
    <dbReference type="EC" id="3.5.4.19" evidence="1"/>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX38178.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A9BXA2"/>
    <dbReference type="SMR" id="A9BXA2"/>
    <dbReference type="STRING" id="398578.Daci_5549"/>
    <dbReference type="PRIDE" id="A9BXA2"/>
    <dbReference type="EnsemblBacteria" id="ABX38178">
        <property type="protein sequence ID" value="ABX38178"/>
        <property type="gene ID" value="Daci_5549"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_5549"/>
    <dbReference type="eggNOG" id="COG0139">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_048577_5_0_4"/>
    <dbReference type="OMA" id="TGYRSCF"/>
    <dbReference type="UniPathway" id="UPA00031">
        <property type="reaction ID" value="UER00008"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000287">
        <property type="term" value="F:magnesium ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004635">
        <property type="term" value="F:phosphoribosyl-AMP cyclohydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008270">
        <property type="term" value="F:zinc ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000105">
        <property type="term" value="P:histidine biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.10.20.810">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01021">
        <property type="entry name" value="HisI"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR026660">
        <property type="entry name" value="PRA-CH"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002496">
        <property type="entry name" value="PRib_AMP_CycHydrolase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038019">
        <property type="entry name" value="PRib_AMP_CycHydrolase_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01502">
        <property type="entry name" value="PRA-CH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF141734">
        <property type="entry name" value="SSF141734"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword id="KW-0028">Amino-acid biosynthesis</keyword>
    <keyword id="KW-0963">Cytoplasm</keyword>
    <keyword id="KW-0368">Histidine biosynthesis</keyword>
    <keyword id="KW-0378">Hydrolase</keyword>
    <keyword id="KW-0460">Magnesium</keyword>
    <keyword id="KW-0479">Metal-binding</keyword>
    <keyword id="KW-1185">Reference proteome</keyword>
    <keyword id="KW-0862">Zinc</keyword>
    <feature type="chain" id="PRO_1000135348" description="Phosphoribosyl-AMP cyclohydrolase">
        <location>
            <begin position="1"/>
            <end position="132"/>
        </location>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <position position="79"/>
        </location>
        <ligand>
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <position position="80"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
            <note>ligand shared between dimeric partners</note>
        </ligand>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <position position="81"/>
        </location>
        <ligand>
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <position position="83"/>
        </location>
        <ligand>
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <position position="100"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
            <note>ligand shared between dimeric partners</note>
        </ligand>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <position position="107"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
            <note>ligand shared between dimeric partners</note>
        </ligand>
    </feature>
    <evidence type="ECO:0000255" key="1">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01021"/>
        </source>
    </evidence>
    <sequence length="132" mass="15077" checksum="A3DE49FCA0CAB009" modified="2008-01-15" version="1">MQAMNWLDQVKWDAQGLVPVIAQEKDTGDVMMFAWMNREALAKTAELGRAVYFSRSRNKLWFKGEESGHVQTVHEVRIDCDNDVVLLKITQTGHEPGIACHTGRHSCFYSVLRDGQWQAVDPVLKDPESIYK</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="70" xmlns="http://uniprot.org/uniprot">
    <accession>A9BXJ2</accession>
    <name>A9BXJ2_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Short-chain dehydrogenase/reductase SDR</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Daci_5639</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="2" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX38268.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012207437.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_5639"/>
    <dbReference type="PRIDE" id="A9BXJ2"/>
    <dbReference type="EnsemblBacteria" id="ABX38268">
        <property type="protein sequence ID" value="ABX38268"/>
        <property type="gene ID" value="Daci_5639"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_5639"/>
    <dbReference type="eggNOG" id="COG1028">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_010194_1_0_4"/>
    <dbReference type="OMA" id="MGEATCH"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036291">
        <property type="entry name" value="NAD(P)-bd_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002347">
        <property type="entry name" value="SDR_fam"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00081">
        <property type="entry name" value="GDHRDH"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51735">
        <property type="entry name" value="SSF51735"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ABX38268.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="250" mass="26718" checksum="1266F8037777B5B0" modified="2008-01-15" version="1">MSRLQGKRTLITGGTSGIGLETAKQFLEEGARVIVTGVNPDSIAKAQAELGPEVQVLRADSASVAAQKELAQIIKEHYGRLDIAFLNAGVSVWLPIEEWSEEMFDRSFDINVKGPYFLMQALLPIFANPASVVLNTSVSAHAGAARSSVYAATKAAFLNMSKTLSTELLGRGIRVNAVSPGPIETPLYDKLGIPDAYREQVNKDIAASIPLGRFGTADEVTKAVLYLASDESRWTVGSEIVVDGGRLLNG</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="65" xmlns="http://uniprot.org/uniprot">
    <accession>A9BXK0</accession>
    <name>A9BXK0_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="4">tRNA-splicing ligase RtcB</fullName>
            <ecNumber evidence="4">6.5.1.-</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="4" type="primary">rtcB</name>
        <name evidence="5" type="ordered locus">Daci_5648</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="6" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="3 4">
            <name>Mn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29035"/>
        </cofactor>
        <text evidence="3 4">Binds 2 manganese ions per subunit.</text>
    </comment>
    <comment type="subunit">
        <text evidence="4">Monomer.</text>
    </comment>
    <comment type="similarity">
        <text evidence="4">Belongs to the RtcB family.</text>
    </comment>
    <dbReference type="EC" id="6.5.1.-" evidence="4"/>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX38276.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012207445.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_5648"/>
    <dbReference type="PRIDE" id="A9BXK0"/>
    <dbReference type="EnsemblBacteria" id="ABX38276">
        <property type="protein sequence ID" value="ABX38276"/>
        <property type="gene ID" value="Daci_5648"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_5648"/>
    <dbReference type="eggNOG" id="COG1690">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_022279_4_0_4"/>
    <dbReference type="OMA" id="PGSMGDY"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005525">
        <property type="term" value="F:GTP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008452">
        <property type="term" value="F:RNA ligase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006396">
        <property type="term" value="P:RNA processing"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.1860.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001233">
        <property type="entry name" value="RtcB"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036025">
        <property type="entry name" value="RtcB-like_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11118">
        <property type="entry name" value="PTHR11118"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01139">
        <property type="entry name" value="RtcB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF103365">
        <property type="entry name" value="SSF103365"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2" id="KW-0342">GTP-binding</keyword>
    <keyword evidence="4" id="KW-0436">Ligase</keyword>
    <keyword evidence="3 4" id="KW-0464">Manganese</keyword>
    <keyword evidence="3 4" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="2" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <feature type="active site" description="GMP-histidine intermediate" evidence="1">
        <location>
            <position position="396"/>
        </location>
    </feature>
    <feature type="binding site" evidence="3">
        <location>
            <position position="106"/>
        </location>
        <ligand>
            <name>Mn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29035"/>
            <label>1</label>
        </ligand>
    </feature>
    <feature type="binding site" evidence="2">
        <location>
            <begin position="225"/>
            <end position="229"/>
        </location>
        <ligand>
            <name>GMP</name>
            <dbReference type="ChEBI" id="CHEBI:58115"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="3">
        <location>
            <position position="226"/>
        </location>
        <ligand>
            <name>Mn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29035"/>
            <label>1</label>
        </ligand>
    </feature>
    <feature type="binding site" evidence="3">
        <location>
            <position position="257"/>
        </location>
        <ligand>
            <name>Mn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29035"/>
            <label>2</label>
        </ligand>
    </feature>
    <feature type="binding site" evidence="2">
        <location>
            <begin position="344"/>
            <end position="345"/>
        </location>
        <ligand>
            <name>GMP</name>
            <dbReference type="ChEBI" id="CHEBI:58115"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="3">
        <location>
            <position position="344"/>
        </location>
        <ligand>
            <name>Mn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29035"/>
            <label>2</label>
        </ligand>
    </feature>
    <feature type="binding site" evidence="2">
        <location>
            <begin position="372"/>
            <end position="375"/>
        </location>
        <ligand>
            <name>GMP</name>
            <dbReference type="ChEBI" id="CHEBI:58115"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="2">
        <location>
            <position position="379"/>
        </location>
        <ligand>
            <name>GMP</name>
            <dbReference type="ChEBI" id="CHEBI:58115"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="2">
        <location>
            <begin position="396"/>
            <end position="399"/>
        </location>
        <ligand>
            <name>GMP</name>
            <dbReference type="ChEBI" id="CHEBI:58115"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="2">
        <location>
            <position position="471"/>
        </location>
        <ligand>
            <name>GMP</name>
            <dbReference type="ChEBI" id="CHEBI:58115"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="PIRSR" id="PIRSR601233-1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="PIRSR" id="PIRSR601233-2"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="PIRSR" id="PIRSR601233-3"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="RuleBase" id="RU371113"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="ABX38276.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="472" mass="50927" checksum="74961A6E9B4C25F3" modified="2008-01-15" version="1">MTTPQRLQRAFARTGISLDYRDGIYHVRDGQAEAHILLPDSLPLEDKAVRQLLAFAAVRRHDGQGSHGAVCRACATPDFHPGTVAPVGSVVATPSDFVIPAAIGTDINCSVRLLTTGARLDQLAPHKGRLVELLTASLLGSGRDVPVTTAAFRALFDHGPAAFVDRLNGQGLWGHVDRDRLHRELAACIGLDSFAGSARHAPHAYLQERHAVFRDPCLGTVGSGNHFVELQVVDEVLDRHAAYRAGLRAGDVVVMIHSGSRDLGFYVGQAWMDRARAEWPQGVKHPASGLYGLSGPLAGEYLQAMGVAARYAWANRVVLAELVRKDLEQIVGAADSRLVVDVPHNVVLQQGGMNIHRKGATPANEGDFALIPGSMGDASYLVTGLGAADWLWSCSHGAGRRMRRQAVRALRPEAHAGRAGEQGWQCVTLREERRIEEAPEAYKPIGPVIESQEAAGLIHAAVKLRPWITFKA</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="58" xmlns="http://uniprot.org/uniprot">
    <accession>A9BXP4</accession>
    <name>A9BXP4_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Daci_5692</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="4" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX38320.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_5692"/>
    <dbReference type="PRIDE" id="A9BXP4"/>
    <dbReference type="EnsemblBacteria" id="ABX38320">
        <property type="protein sequence ID" value="ABX38320"/>
        <property type="gene ID" value="Daci_5692"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_5692"/>
    <dbReference type="eggNOG" id="COG4795">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_086053_0_0_4"/>
    <dbReference type="OMA" id="WRGLDGM"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012902">
        <property type="entry name" value="N_methyl_site"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045584">
        <property type="entry name" value="Pilin-like"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07963">
        <property type="entry name" value="N_methyl"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54523">
        <property type="entry name" value="SSF54523"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR02532">
        <property type="entry name" value="IV_pilin_GFxxxE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00409">
        <property type="entry name" value="PROKAR_NTER_METHYL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="2" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="12"/>
            <end position="33"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="169"/>
            <end position="198"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ABX38320.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="233" mass="26360" checksum="21B83724C5513BF8" modified="2008-01-15" version="1">MRHPSRTHGFTLVELMVAIAVMALLALVSWRGLDSMVRSQESIRARNEQQMVLQTVIAQWNADLEALMPLENTQVIDWDGQVLRMTRKSSAAVDDGAVVVAWARRQTAGRDQWLRWQSPPLRTRAQWRDAWNQGSQWGRNPSDDQRRRETVLMPLDQWRLYYYRDNAWSNPQSSGSDNGTGTVNPPSGGTNSSAQLPTIPDGIRVELTLPPDSAIPGRVTMDWVNPLRSNSRS</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="70" xmlns="http://uniprot.org/uniprot">
    <accession>A9BXQ2</accession>
    <name>A9BXQ2_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Luciferase family protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Daci_5700</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="4" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">To bacterial alkanal monooxygenase alpha and beta chains.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX38328.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012207497.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_5700"/>
    <dbReference type="PRIDE" id="A9BXQ2"/>
    <dbReference type="EnsemblBacteria" id="ABX38328">
        <property type="protein sequence ID" value="ABX38328"/>
        <property type="gene ID" value="Daci_5700"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_5700"/>
    <dbReference type="eggNOG" id="COG2141">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_027853_9_0_4"/>
    <dbReference type="OMA" id="APGSDQM"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016705">
        <property type="term" value="F:oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.20.20.30">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011251">
        <property type="entry name" value="Luciferase-like_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036661">
        <property type="entry name" value="Luciferase-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019949">
        <property type="entry name" value="Luciferase_OxRdatse_group-1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00296">
        <property type="entry name" value="Bac_luciferase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51679">
        <property type="entry name" value="SSF51679"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR03558">
        <property type="entry name" value="oxido_grp_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Bac_luciferase" evidence="2">
        <location>
            <begin position="19"/>
            <end position="300"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00007789"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF00296"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ABX38328.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="333" mass="35894" checksum="0EADC89F4679FBDC" modified="2008-01-15" version="1">MTSFNEVRLSMLDLVAVREGGTVAEALDIALATARKAEELGFERYWLAEHHNMPGIASSATAVLIGHIAGGTSKIRVGSGGIMLPNHAPLVVAEAFGTLAELYPGRIDLGLGRAPGTDGATMRALRRDRVETEEDFPRDVMELQRLLGPATPEQKLVATPGAGTNVPIWLLGSSLFSAQLAAHLGLPYAFASHFAPRMLYQAVQLYRSLFKPSAQLAKPYVIVGAPVIAAPTDDEAEYLASSTYQRVLGIITGRRGLLPRPIENYAAQLGEQERRAIGDFLAVASIGGPDKVRTRLQKLQADTEADELILVSDVYDRDLRLRSLEITAGVMGR</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="42" xmlns="http://uniprot.org/uniprot">
    <accession>A9BXS4</accession>
    <name>A9BXS4_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Daci_5722</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="2" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX38350.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012207519.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_5722"/>
    <dbReference type="PRIDE" id="A9BXS4"/>
    <dbReference type="EnsemblBacteria" id="ABX38350">
        <property type="protein sequence ID" value="ABX38350"/>
        <property type="gene ID" value="Daci_5722"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_5722"/>
    <dbReference type="eggNOG" id="COG1315">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_082642_0_0_4"/>
    <dbReference type="OMA" id="EAGWGIK"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ABX38350.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="291" mass="30613" checksum="A29F39E9173E2A50" modified="2008-01-15" version="1">MDMELSQNFLRAKSPCAAGFRWFVRNRHDGNDYQRVLDALVGDGRIEDARWLMNQFGPTDAVLEVDHLEADALVFAGSVVVHGELRVPGLLAVGRTLQAGAGIHAGRIEAGQDLHSGGAIFCSGPLQAGGLVKAAWSVDVHEELRAEDVRAGWELRCGADLRLGGGAQAGQDIEVQGAIRCGKGLRAGGSIRASGLIELGHGLYAGADVEGGSHIEVDWGMRALGDIRAACSIRAGETLHAEGEIAAGPGYGIYAGMNVQQDAWPSCAWVHAAQRPPALLSGWWEEAAAPA</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="72" xmlns="http://uniprot.org/uniprot">
    <accession>A9BXS5</accession>
    <name>A9BXS5_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Riboflavin synthase, alpha subunit</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ordered locus">Daci_5723</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="5" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX38351.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012207520.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_5723"/>
    <dbReference type="PRIDE" id="A9BXS5"/>
    <dbReference type="EnsemblBacteria" id="ABX38351">
        <property type="protein sequence ID" value="ABX38351"/>
        <property type="gene ID" value="Daci_5723"/>
    </dbReference>
    <dbReference type="GeneID" id="60690085"/>
    <dbReference type="KEGG" id="dac:Daci_5723"/>
    <dbReference type="eggNOG" id="COG0307">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_034388_0_0_4"/>
    <dbReference type="OMA" id="HILSGHV"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="CDD" id="cd00402">
        <property type="entry name" value="Riboflavin_synthase_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.30.20">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023366">
        <property type="entry name" value="ATP_synth_asu-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001783">
        <property type="entry name" value="Lumazine-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR026017">
        <property type="entry name" value="Lumazine-bd_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017938">
        <property type="entry name" value="Riboflavin_synthase-like_b-brl"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR21098">
        <property type="entry name" value="PTHR21098"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00677">
        <property type="entry name" value="Lum_binding"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF000498">
        <property type="entry name" value="Riboflavin_syn_A"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF63380">
        <property type="entry name" value="SSF63380"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00187">
        <property type="entry name" value="ribE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51177">
        <property type="entry name" value="LUMAZINE_BIND"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0677">Repeat</keyword>
    <feature type="repeat" description="Lumazine-binding" evidence="2">
        <location>
            <begin position="1"/>
            <end position="98"/>
        </location>
    </feature>
    <feature type="domain" description="Lumazine-binding" evidence="3">
        <location>
            <begin position="1"/>
            <end position="98"/>
        </location>
    </feature>
    <feature type="domain" description="Lumazine-binding" evidence="3">
        <location>
            <begin position="99"/>
            <end position="197"/>
        </location>
    </feature>
    <feature type="repeat" description="Lumazine-binding" evidence="2">
        <location>
            <begin position="99"/>
            <end position="197"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022737"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00524"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="PROSITE" id="PS51177"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="ABX38351.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="234" mass="25308" checksum="C58886D694FF0D66" modified="2008-01-15" version="1">MFTGIIQAVASIAALRDQNGLRTFTLDFPEGFCQDLAIGASVSTDGVCLTVTEILSPTRATFDVMLQSLNITTLGGYAVGGRVNVERAAKDGAEIGGHPLSGHVDFTSPVLEVASSDTNHRIRFGIPEGFRHYVFAKGYIAINGASLTVSEVDRQAGWFEVWLIPETRRMTVFESKGVGDLLNVEIDRSTQVVVDTVRETVQQSLGRLQPVLEALLKEKGLSLDDFIDVPKLPG</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="96" xmlns="http://uniprot.org/uniprot">
    <accession>A9BY32</accession>
    <name>A9BY32_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="5">Sensor protein QseC</fullName>
            <ecNumber evidence="4">2.7.13.3</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="15" type="ordered locus">Daci_1323</name>
    </gene>
    <organism evidence="15 16">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="15 16" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="16">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="16" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="16">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>ATP + protein L-histidine = ADP + protein N-phospho-L-histidine.</text>
            <dbReference type="EC" id="2.7.13.3"/>
        </reaction>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="3">Cell inner membrane</location>
            <topology evidence="3">Multi-pass membrane protein</topology>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="2">Membrane</location>
            <topology evidence="2">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <dbReference type="EC" id="2.7.13.3" evidence="4"/>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX33967.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012203253.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_1323"/>
    <dbReference type="PRIDE" id="A9BY32"/>
    <dbReference type="EnsemblBacteria" id="ABX33967">
        <property type="protein sequence ID" value="ABX33967"/>
        <property type="gene ID" value="Daci_1323"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_1323"/>
    <dbReference type="eggNOG" id="COG5002">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_000445_89_37_4"/>
    <dbReference type="OMA" id="DKLFDTQ"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000155">
        <property type="term" value="F:phosphorelay sensor kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd00082">
        <property type="entry name" value="HisKA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.565.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013727">
        <property type="entry name" value="2CSK_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003660">
        <property type="entry name" value="HAMP_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003594">
        <property type="entry name" value="HATPase_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036890">
        <property type="entry name" value="HATPase_C_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005467">
        <property type="entry name" value="His_kinase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003661">
        <property type="entry name" value="HisK_dim/P"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036097">
        <property type="entry name" value="HisK_dim/P_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004358">
        <property type="entry name" value="Sig_transdc_His_kin-like_C"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08521">
        <property type="entry name" value="2CSK_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02518">
        <property type="entry name" value="HATPase_c"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00512">
        <property type="entry name" value="HisKA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00344">
        <property type="entry name" value="BCTRLSENSOR"/>
    </dbReference>
    <dbReference type="SMART" id="SM00387">
        <property type="entry name" value="HATPase_c"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00388">
        <property type="entry name" value="HisKA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47384">
        <property type="entry name" value="SSF47384"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55874">
        <property type="entry name" value="SSF55874"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50885">
        <property type="entry name" value="HAMP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50109">
        <property type="entry name" value="HIS_KIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="9 15" id="KW-0418">Kinase</keyword>
    <keyword evidence="11 12" id="KW-0472">Membrane</keyword>
    <keyword evidence="6" id="KW-0597">Phosphoprotein</keyword>
    <keyword evidence="16" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="7" id="KW-0808">Transferase</keyword>
    <keyword evidence="8 12" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="10 12" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="12">
        <location>
            <begin position="157"/>
            <end position="180"/>
        </location>
    </feature>
    <feature type="domain" description="HAMP" evidence="14">
        <location>
            <begin position="181"/>
            <end position="233"/>
        </location>
    </feature>
    <feature type="domain" description="Histidine kinase" evidence="13">
        <location>
            <begin position="241"/>
            <end position="478"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00000085"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00004429"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00012438"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00017234"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022553"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00022777"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="12">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="13">
        <source>
            <dbReference type="PROSITE" id="PS50109"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="14">
        <source>
            <dbReference type="PROSITE" id="PS50885"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="15">
        <source>
            <dbReference type="EMBL" id="ABX33967.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="16">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="495" mass="53484" checksum="32F27397CCEC394B" modified="2008-01-15" version="1">MTANLRLRLLVLLVVPLTLLALMGGWFGYRSADEASTQHDQRLLRLLPALADSVLAPSIAEGTPPLVALTPAIEDVLRQRGDDVGYAIGDLQGHVVAGDTWIRFDVPSTPLAEFHSQEHDGLTYRVAVMRAETYGAGEMVLVLADGGDVRQQWVRQLLLHVLLPSVLLIAGAGIAIYWSVSRAFRPLLTLTQAVERRSPRDLSPISEHSSPAEVRPLVRSLNRLFALVNAQAEGQRRFVADAAHQLRTPLAALQAQVEAWALSAQAAQAEARRKGTEAQVVLSVTQIEQLRDATRRTSQLARQLLALSRADARNAEVQPLQKVDLKDLCESMLEMFFDQASAKGLDFGLDVAPASVWGHSWLLRELVSNLVDNAIKYTPPGGSVTLRCGMYHGAGQSADEPQGWAFLEIEDDGPGVPEAERSQITQRFYRAQGAAGDGTGLGLAIADEIALLHQGTLAFGAGTQGKGLLVRLELPLQMPAVLSETIAAQATGKRS</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="80" xmlns="http://uniprot.org/uniprot">
    <accession>A9BY57</accession>
    <name>A9BY57_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">Histidine kinase</fullName>
            <ecNumber evidence="2">2.7.13.3</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="6" type="ordered locus">Daci_1552</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="7" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>ATP + protein L-histidine = ADP + protein N-phospho-L-histidine.</text>
            <dbReference type="EC" id="2.7.13.3"/>
        </reaction>
    </comment>
    <dbReference type="EC" id="2.7.13.3" evidence="2"/>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX34196.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_1552"/>
    <dbReference type="PRIDE" id="A9BY57"/>
    <dbReference type="EnsemblBacteria" id="ABX34196">
        <property type="protein sequence ID" value="ABX34196"/>
        <property type="gene ID" value="Daci_1552"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_1552"/>
    <dbReference type="eggNOG" id="COG4191">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_000445_89_1_4"/>
    <dbReference type="OMA" id="HEEDPIY"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000155">
        <property type="term" value="F:phosphorelay sensor kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd00082">
        <property type="entry name" value="HisKA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.565.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003594">
        <property type="entry name" value="HATPase_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036890">
        <property type="entry name" value="HATPase_C_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005467">
        <property type="entry name" value="His_kinase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003661">
        <property type="entry name" value="HisK_dim/P"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036097">
        <property type="entry name" value="HisK_dim/P_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004358">
        <property type="entry name" value="Sig_transdc_His_kin-like_C"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02518">
        <property type="entry name" value="HATPase_c"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00512">
        <property type="entry name" value="HisKA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00344">
        <property type="entry name" value="BCTRLSENSOR"/>
    </dbReference>
    <dbReference type="SMART" id="SM00387">
        <property type="entry name" value="HATPase_c"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00388">
        <property type="entry name" value="HisKA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47384">
        <property type="entry name" value="SSF47384"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55874">
        <property type="entry name" value="SSF55874"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50109">
        <property type="entry name" value="HIS_KIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="6" id="KW-0418">Kinase</keyword>
    <keyword evidence="4" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-0597">Phosphoprotein</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="6" id="KW-0808">Transferase</keyword>
    <keyword evidence="4" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="4" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="4">
        <location>
            <begin position="27"/>
            <end position="46"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="4">
        <location>
            <begin position="52"/>
            <end position="68"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="4">
        <location>
            <begin position="75"/>
            <end position="96"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="4">
        <location>
            <begin position="102"/>
            <end position="121"/>
        </location>
    </feature>
    <feature type="domain" description="Histidine kinase" evidence="5">
        <location>
            <begin position="152"/>
            <end position="369"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00000085"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00012438"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022553"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="PROSITE" id="PS50109"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="ABX34196.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="382" mass="41014" checksum="5E18A2306504FEEC" modified="2008-01-15" version="1">MNENWQLTVHSFSLHAMTTALRRFPHWPRALILAAMAAAMAAIFALDTLTDYAVAAAVFHTAIILVAVRWFSPRVVIGLTALCIVLTLASFALTPAGAYRTGLINMVISILAIAITAYLGLKMVAAQNAAHEARTQLMRITQTTSLGQLTASIAHEVNQPLAAIVTSGNACQRWLAQDPPNLAKAGQALERILGDAQRASDVIARIRSMARGEAPSRQSFDLNDAVREMARLSDAELDRRGVALDLQLAPALQPAWADRVHIQQVLANLLLNAMDAMQGTPAAQRRITVTTQALGQQLVLTVADAGEGLSPLARTHLFDAFWTTKPDGMGLGLNICRHMAEANGGRIWATDREDMRGGTVFHITIACAPATGDRSSTGLRHG</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="61" xmlns="http://uniprot.org/uniprot">
    <accession>A9BY59</accession>
    <name>A9BY59_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="6">MFS domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="7" type="ordered locus">Daci_1554</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="8" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX34198.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012203484.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_1554"/>
    <dbReference type="PRIDE" id="A9BY59"/>
    <dbReference type="EnsemblBacteria" id="ABX34198">
        <property type="protein sequence ID" value="ABX34198"/>
        <property type="gene ID" value="Daci_1554"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_1554"/>
    <dbReference type="eggNOG" id="COG0477">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_034180_11_1_4"/>
    <dbReference type="OMA" id="GMWAVAM"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0022857">
        <property type="term" value="F:transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.1250.20">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020846">
        <property type="entry name" value="MFS_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036259">
        <property type="entry name" value="MFS_trans_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010290">
        <property type="entry name" value="TM_effector"/>
    </dbReference>
    <dbReference type="Pfam" id="PF05977">
        <property type="entry name" value="MFS_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF103473">
        <property type="entry name" value="SSF103473"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50850">
        <property type="entry name" value="MFS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4 5" id="KW-0472">Membrane</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 5" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="3 5" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="23"/>
            <end position="40"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="60"/>
            <end position="80"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="89"/>
            <end position="108"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="114"/>
            <end position="132"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="153"/>
            <end position="175"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="181"/>
            <end position="201"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="234"/>
            <end position="253"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="265"/>
            <end position="286"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="298"/>
            <end position="316"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="322"/>
            <end position="344"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="356"/>
            <end position="378"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="384"/>
            <end position="402"/>
        </location>
    </feature>
    <feature type="domain" description="MFS" evidence="6">
        <location>
            <begin position="23"/>
            <end position="411"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="PROSITE" id="PS50850"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="ABX34198.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="553" mass="58351" checksum="3052B678BF498661" modified="2008-01-15" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2021-06-02" version="44" xmlns="http://uniprot.org/uniprot">
    <accession>A9BYF9</accession>
    <name>A9BYF9_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_1655</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX34298.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012203583.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_1655"/>
    <dbReference type="EnsemblBacteria" id="ABX34298">
        <property type="protein sequence ID" value="ABX34298"/>
        <property type="gene ID" value="Daci_1655"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_1655"/>
    <dbReference type="eggNOG" id="ENOG5033BIN">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_184326_0_0_4"/>
    <dbReference type="OMA" id="WASWHAD"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="51"/>
            <end position="73"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX34298.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="92" mass="10388" checksum="62781F8382AA9BD2" modified="2008-01-15" version="1">MSFDQIAIALLGALAAWLSQARGESSRKWAPVFGMLGQPFWFYASWQAEQWGIFAVSIIYACAWGRGLWVYWISPRREHGTGSIQLVPGRKP</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="73" xmlns="http://uniprot.org/uniprot">
    <accession>A9BYJ8</accession>
    <name>A9BYJ8_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Transcriptional regulator, MarR family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_1901</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX34541.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012203826.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_1901"/>
    <dbReference type="PRIDE" id="A9BYJ8"/>
    <dbReference type="EnsemblBacteria" id="ABX34541">
        <property type="protein sequence ID" value="ABX34541"/>
        <property type="gene ID" value="Daci_1901"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_1901"/>
    <dbReference type="eggNOG" id="COG1846">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_083287_35_1_4"/>
    <dbReference type="OMA" id="GPMTMKQ"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003700">
        <property type="term" value="F:DNA-binding transcription factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000835">
        <property type="entry name" value="HTH_MarR-typ"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036390">
        <property type="entry name" value="WH_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12802">
        <property type="entry name" value="MarR_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00347">
        <property type="entry name" value="HTH_MARR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46785">
        <property type="entry name" value="SSF46785"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50995">
        <property type="entry name" value="HTH_MARR_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HTH marR-type" evidence="1">
        <location>
            <begin position="12"/>
            <end position="143"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS50995"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX34541.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="168" mass="18038" checksum="1CE5686511D15F6A" modified="2008-01-15" version="1">MPVNPDILAVPQGCTNHRVRQLMRSVGQVYDAHLNETGLRITQYSLLSHVLAASPVRPSDLARRMRMDASTLTRNLKPLIDAGWVRMGQGEDQRSRLVHITDAGQAKREEAKQSWKTAQNELNARVGLERVAALHALIDECLVLLDGGDGDGAGGGAGDGNAADGPQA</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="71" xmlns="http://uniprot.org/uniprot">
    <accession>A9BYY2</accession>
    <name>A9BYY2_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">Sulfurtransferase</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="4" type="ordered locus">Daci_2237</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="5" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX34877.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012204160.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_2237"/>
    <dbReference type="PRIDE" id="A9BYY2"/>
    <dbReference type="EnsemblBacteria" id="ABX34877">
        <property type="protein sequence ID" value="ABX34877"/>
        <property type="gene ID" value="Daci_2237"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_2237"/>
    <dbReference type="eggNOG" id="COG2897">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_031618_0_0_4"/>
    <dbReference type="OMA" id="LLDVRWQ"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004792">
        <property type="term" value="F:thiosulfate sulfurtransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.250.10">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001763">
        <property type="entry name" value="Rhodanese-like_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036873">
        <property type="entry name" value="Rhodanese-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001307">
        <property type="entry name" value="Thiosulphate_STrfase_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045078">
        <property type="entry name" value="TST/MPST-like"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11364">
        <property type="entry name" value="PTHR11364"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00581">
        <property type="entry name" value="Rhodanese"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SMART" id="SM00450">
        <property type="entry name" value="RHOD"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52821">
        <property type="entry name" value="SSF52821"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00683">
        <property type="entry name" value="RHODANESE_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50206">
        <property type="entry name" value="RHODANESE_3"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0677">Repeat</keyword>
    <keyword evidence="2" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Rhodanese" evidence="3">
        <location>
            <begin position="25"/>
            <end position="158"/>
        </location>
    </feature>
    <feature type="domain" description="Rhodanese" evidence="3">
        <location>
            <begin position="189"/>
            <end position="302"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022737"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="RuleBase" id="RU000507"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="PROSITE" id="PS50206"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="ABX34877.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="304" mass="32429" checksum="90AB9026DF0E4257" modified="2008-01-15" version="1">MTSNTPYQTHQTLISVQELAALHASGRPLMVFDCSFDLTQPAAGKAQYLQAHVPGAVFADLDHDLSAKHGVPGAHGSVAASEQAASGGRHPLPNRERFAVWLSSIGFSNDMQAVVYDRNGANYCGRLWWMLQWAGHGDVAVLDGGLQAWQAAGQPVASGEESARFQSNFELREPLQQLATAQQVLDALGSAGQTVVDARAPARYRGEVEPLDPVAGHIPGALNRPFTENIAADGRFKPAALLRAEFDQLLAGRDPASVVHQCGSGVSALPNLLAMRIAGLPPARLFAGSWSEWCSDPKRPVERG</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="58" xmlns="http://uniprot.org/uniprot">
    <accession>A9BZX8</accession>
    <name>A9BZX8_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Extracellular solute-binding protein family 3</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ordered locus">Daci_3606</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="5" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX36240.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012205440.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_3606"/>
    <dbReference type="PRIDE" id="A9BZX8"/>
    <dbReference type="EnsemblBacteria" id="ABX36240">
        <property type="protein sequence ID" value="ABX36240"/>
        <property type="gene ID" value="Daci_3606"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_3606"/>
    <dbReference type="eggNOG" id="COG0834">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_019602_3_2_4"/>
    <dbReference type="OMA" id="RNTTWTF"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001638">
        <property type="entry name" value="Solute-binding_3/MltF_N"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00497">
        <property type="entry name" value="SBP_bac_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00062">
        <property type="entry name" value="PBPb"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1 2" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="2">
        <location>
            <begin position="1"/>
            <end position="27"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5002732719" evidence="2">
        <location>
            <begin position="28"/>
            <end position="345"/>
        </location>
    </feature>
    <feature type="domain" description="PBPb" evidence="3">
        <location>
            <begin position="39"/>
            <end position="269"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022729"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="SMART" id="SM00062"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="ABX36240.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="345" mass="36754" checksum="E8332D01A634B68B" modified="2008-01-15" version="1">MNAPARLRLALASMAALLTLAAAPAHAGKTLDGIKQRGAVACGVHTGRAGFALADGSGNWSGLDVDLCRAVAAATLGDASKVKFIPTSGQTRITALQSGEIDLLARNTTWTFTRDNGLGLMWAGINFHDGQGFMARKKPGLNSVKQLSGATICVISGSTTEKTLSEYFRAHKLNYKAVVFDNPEAALQAFSSGRCQAYTGDLGALAVLRGKELANPDDYVILPEVISKEPAGPAVRRGDDEWFAVVRWTLNAMIEAEELGITQANADELKTRSDSIQVKRFLGQSDDLGKQLGLDKEWALRIVKAVGNYGESYERNLGAKSGLNVPRGKNALFTKGGLMMSPPMN</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="64" xmlns="http://uniprot.org/uniprot">
    <accession>A9C007</accession>
    <name>A9C007_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Response regulator receiver and ANTAR domain protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Daci_3637</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="4" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX36269.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012205465.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_3637"/>
    <dbReference type="PRIDE" id="A9C007"/>
    <dbReference type="EnsemblBacteria" id="ABX36269">
        <property type="protein sequence ID" value="ABX36269"/>
        <property type="gene ID" value="Daci_3637"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_3637"/>
    <dbReference type="eggNOG" id="COG3707">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_108803_1_0_4"/>
    <dbReference type="OMA" id="AYENPTF"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003723">
        <property type="term" value="F:RNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005561">
        <property type="entry name" value="ANTAR"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011006">
        <property type="entry name" value="CheY-like_superfamily"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008327">
        <property type="entry name" value="Sig_transdc_resp-reg_antiterm"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03861">
        <property type="entry name" value="ANTAR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF036382">
        <property type="entry name" value="RR_antiterm"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM01012">
        <property type="entry name" value="ANTAR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52172">
        <property type="entry name" value="SSF52172"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50921">
        <property type="entry name" value="ANTAR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="ANTAR" evidence="2">
        <location>
            <begin position="154"/>
            <end position="215"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="23"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS50921"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ABX36269.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="229" mass="25226" checksum="A22A9D8FD1F1A240" modified="2008-01-15" version="1">MDAAPNKDAGSAATGRPLLERKPLLRATSPQLKELRQLRIAVVHPDDADGRLLAQQLQRIGCQVQAIWPPQPSLPEGTDVVFLAVRPDHLQLNYAWTQGEGESPPTAIAVVNYENPTIVSAVLELQVQAILPSPIRSFGLLSTLVLARRNHKESRQQQQRIAKLQAKLLGQRRVAEAKAILMQTHQINEDQAYEMIRAQAMSRRSSVEEIAQAIVHASEILSLGKGVGR</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="93" xmlns="http://uniprot.org/uniprot">
    <accession>A9C066</accession>
    <name>A9C066_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="13 14 15">UvrABC system protein B</fullName>
            <shortName evidence="14">Protein UvrB</shortName>
        </recommendedName>
        <alternativeName>
            <fullName evidence="14">Excinuclease ABC subunit B</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="14" type="primary">uvrB</name>
        <name evidence="19" type="ordered locus">Daci_4001</name>
    </gene>
    <organism evidence="19 20">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="19 20" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="20">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="20" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="20">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="11 14">The UvrABC repair system catalyzes the recognition and processing of DNA lesions. A damage recognition complex composed of 2 UvrA and 2 UvrB subunits scans DNA for abnormalities. Upon binding of the UvrA(2)B(2) complex to a putative damaged site, the DNA wraps around one UvrB monomer. DNA wrap is dependent on ATP binding by UvrB and probably causes local melting of the DNA helix, facilitating insertion of UvrB beta-hairpin between the DNA strands. Then UvrB probes one DNA strand for the presence of a lesion. If a lesion is found the UvrA subunits dissociate and the UvrB-DNA preincision complex is formed. This complex is subsequently bound by UvrC and the second UvrB is released. If no lesion is found, the DNA wraps around the other UvrB subunit that will check the other stand for damage.</text>
    </comment>
    <comment type="subunit">
        <text evidence="12 14 15">Forms a heterotetramer with UvrA during the search for lesions. Interacts with UvrC in an incision complex.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1 14 15">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="domain">
        <text evidence="14">The beta-hairpin motif is involved in DNA binding.</text>
    </comment>
    <comment type="similarity">
        <text evidence="2 14 15">Belongs to the UvrB family.</text>
    </comment>
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        <property type="protein sequence ID" value="ABX36632.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_4001"/>
    <dbReference type="PRIDE" id="A9C066"/>
    <dbReference type="EnsemblBacteria" id="ABX36632">
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        <property type="gene ID" value="Daci_4001"/>
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    <dbReference type="eggNOG" id="COG0556">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_009621_2_1_4"/>
    <dbReference type="OMA" id="EYVDRMV"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
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    </dbReference>
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        <property type="term" value="P:nucleotide-excision repair"/>
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        <property type="match status" value="3"/>
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        <property type="match status" value="1"/>
    </dbReference>
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        <property type="entry name" value="Helicase/UvrB_N"/>
    </dbReference>
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        <property type="entry name" value="Helicase_ATP-bd"/>
    </dbReference>
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        <property type="entry name" value="Helicase_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
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        <property type="entry name" value="UVR_dom"/>
    </dbReference>
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        <property type="entry name" value="UVR_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004807">
        <property type="entry name" value="UvrB"/>
    </dbReference>
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        <property type="entry name" value="UvrB_inter"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR024759">
        <property type="entry name" value="UvrB_YAD/RRR_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR24029">
        <property type="entry name" value="PTHR24029"/>
        <property type="match status" value="1"/>
    </dbReference>
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        <property type="entry name" value="Helicase_C"/>
        <property type="match status" value="1"/>
    </dbReference>
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        <property type="entry name" value="ResIII"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02151">
        <property type="entry name" value="UVR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12344">
        <property type="entry name" value="UvrB"/>
        <property type="match status" value="1"/>
    </dbReference>
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        <property type="entry name" value="UvrB_inter"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00487">
        <property type="entry name" value="DEXDc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00490">
        <property type="entry name" value="HELICc"/>
        <property type="match status" value="1"/>
    </dbReference>
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        <property type="entry name" value="SSF46600"/>
        <property type="match status" value="1"/>
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        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="2"/>
    </dbReference>
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        <property type="entry name" value="uvrb"/>
        <property type="match status" value="1"/>
    </dbReference>
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        <property type="entry name" value="HELICASE_ATP_BIND_1"/>
        <property type="match status" value="1"/>
    </dbReference>
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        <property type="entry name" value="HELICASE_CTER"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50151">
        <property type="entry name" value="UVR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="7 14" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="3 14" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="5 14 15" id="KW-0227">DNA damage</keyword>
    <keyword evidence="6 14 15" id="KW-0228">DNA excision</keyword>
    <keyword evidence="9 14 15" id="KW-0234">DNA repair</keyword>
    <keyword evidence="8 14 15" id="KW-0267">Excision nuclease</keyword>
    <keyword evidence="4 14" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="20" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="10 14 15" id="KW-0742">SOS response</keyword>
    <feature type="domain" description="Helicase ATP-binding" evidence="17">
        <location>
            <begin position="63"/>
            <end position="197"/>
        </location>
    </feature>
    <feature type="domain" description="Helicase C-terminal" evidence="18">
        <location>
            <begin position="467"/>
            <end position="633"/>
        </location>
    </feature>
    <feature type="domain" description="UVR" evidence="16">
        <location>
            <begin position="667"/>
            <end position="702"/>
        </location>
    </feature>
    <feature type="short sequence motif" description="Beta-hairpin" evidence="14">
        <location>
            <begin position="129"/>
            <end position="152"/>
        </location>
    </feature>
    <feature type="binding site" evidence="14">
        <location>
            <begin position="76"/>
            <end position="83"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
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        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00008533"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022490"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
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        <source>
            <dbReference type="ARBA" id="ARBA00022763"/>
        </source>
    </evidence>
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        <source>
            <dbReference type="ARBA" id="ARBA00022769"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
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        <source>
            <dbReference type="ARBA" id="ARBA00022881"/>
        </source>
    </evidence>
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        <source>
            <dbReference type="ARBA" id="ARBA00023204"/>
        </source>
    </evidence>
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        <source>
            <dbReference type="ARBA" id="ARBA00023236"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="ARBA" id="ARBA00025647"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="12">
        <source>
            <dbReference type="ARBA" id="ARBA00026033"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="13">
        <source>
            <dbReference type="ARBA" id="ARBA00029504"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="14">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00204"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="15">
        <source>
            <dbReference type="RuleBase" id="RU003587"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="16">
        <source>
            <dbReference type="PROSITE" id="PS50151"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="17">
        <source>
            <dbReference type="PROSITE" id="PS51192"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="18">
        <source>
            <dbReference type="PROSITE" id="PS51194"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="19">
        <source>
            <dbReference type="EMBL" id="ABX36632.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="20">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="712" mass="81025" checksum="3BF622FB2D00DDD4" modified="2008-01-15" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-05-25" version="59" xmlns="http://uniprot.org/uniprot">
    <accession>A9C094</accession>
    <name>A9C094_DELAS</name>
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        <recommendedName>
            <fullName evidence="1">VOC domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_4029</name>
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    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
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            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
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                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
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            </authorList>
            <dbReference type="PubMed" id="15240283"/>
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        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
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        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
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            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
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    </dbReference>
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    </dbReference>
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    </dbReference>
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    </dbReference>
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        <property type="match status" value="1"/>
    </dbReference>
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        <property type="entry name" value="VOC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="VOC" evidence="1">
        <location>
            <begin position="5"/>
            <end position="127"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS51819"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX36660.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="128" mass="13593" checksum="58F4A5A15F7DDF87" modified="2008-01-15" version="1">MKPNPVVWFEIHVNDLERARRFYEAVFQCQLEPLPAPEGQASGNEMLAFPMDMPGSGAAGTLVKMEGVAPGGGGTLVYFGCEDCAVEQGRVVAAGGQIHKPKFSIGPYGHCALVVDTEGNCIGLHSMQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="63" xmlns="http://uniprot.org/uniprot">
    <accession>A9C0G9</accession>
    <name>A9C0G9_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Anti-sigma-factor antagonist</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_4411</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX37042.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012206214.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_4411"/>
    <dbReference type="PRIDE" id="A9C0G9"/>
    <dbReference type="EnsemblBacteria" id="ABX37042">
        <property type="protein sequence ID" value="ABX37042"/>
        <property type="gene ID" value="Daci_4411"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_4411"/>
    <dbReference type="eggNOG" id="COG1366">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_026775_0_0_4"/>
    <dbReference type="OMA" id="TQVAQHI"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.750.24">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025751">
        <property type="entry name" value="RsbRD_N_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002645">
        <property type="entry name" value="STAS_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036513">
        <property type="entry name" value="STAS_dom_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF14361">
        <property type="entry name" value="RsbRD_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01740">
        <property type="entry name" value="STAS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52091">
        <property type="entry name" value="SSF52091"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50801">
        <property type="entry name" value="STAS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="STAS" evidence="1">
        <location>
            <begin position="155"/>
            <end position="266"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS50801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX37042.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="280" mass="30475" checksum="7F89D8D9652C6C04" modified="2008-01-15" version="1">MTGIIQQTLQNDIDALIHDWMAQASVGDSTLGKNAEKDARGIINAIVGAFASGADPQRFSDEGWNPARRLLAELSRTRAAQGQRAGETSQFILSLKKPLFAHIQRGLSGDPAAAIQEIWSATVLVDNMAQHTVSSFQQAREEIIIRQQEELLELSTPVVKLWEGVLAIPLIGTLDSNRTQVVMESLLQSLVSTESELAIIDITGVPTVDTLVAQHLLRTVTAIRLMGADCIISGIRPQIAQTIVHLGIDMRDITTKATLAEALKLAMGKTGWRITRQTQE</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="34" xmlns="http://uniprot.org/uniprot">
    <accession>A9C0H1</accession>
    <name>A9C0H1_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Daci_4413</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="4" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX37044.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_4413"/>
    <dbReference type="PRIDE" id="A9C0H1"/>
    <dbReference type="EnsemblBacteria" id="ABX37044">
        <property type="protein sequence ID" value="ABX37044"/>
        <property type="gene ID" value="Daci_4413"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_4413"/>
    <dbReference type="HOGENOM" id="CLU_803449_0_0_4"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="2">
        <location>
            <begin position="1"/>
            <end position="19"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5002735269" evidence="2">
        <location>
            <begin position="20"/>
            <end position="345"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="56"/>
            <end position="86"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ABX37044.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="345" mass="37357" checksum="32EB45896170CA4F" modified="2008-01-15" version="1">MLHKLLLWFHVFTNFSALAQCRRGPVSAEPVLPLPTSAPARAPHCQACGPSQGRITPCKKLRPPPPSPAIRCTASRSKPSSVPWRPAMAGPPWHGRFRCAASRWTPASAPASSSCARRPGRARRWKRSIWTCCARTGAGPLPQTEGASRMPPDKMSSAQAQAVPIIGTVSDPATLPDTTMTQSQNPVAVIASAMKTHGIVPADFDIASIEDEYALMAALRQHTKAAQVKLFDGGIGEDNDADEDYVALLKRFAKACGGAIGYEGIESGMEGDTVTLRFQSGGQEHSWSFEQDGDRVSEEFLDFIIDHSKSCTAGEFINLLDENSLLTGFVPKDISRLLYEHDIVY</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-01-19" version="44" xmlns="http://uniprot.org/uniprot">
    <accession>A9C0I5</accession>
    <name>A9C0I5_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Daci_4428</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="2" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX37058.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012206230.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_4428"/>
    <dbReference type="EnsemblBacteria" id="ABX37058">
        <property type="protein sequence ID" value="ABX37058"/>
        <property type="gene ID" value="Daci_4428"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_4428"/>
    <dbReference type="eggNOG" id="ENOG5032TXS">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_171766_0_0_4"/>
    <dbReference type="OMA" id="GIWRFPD"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ABX37058.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="112" mass="11896" checksum="7EF329AEF8A7B718" modified="2008-01-15" version="1">MSHYLVELYSPNPAWLALPAAQRQQFLDAVASAMGGLAAMGVQVLALAETERGLDQASPHRFLGIWRFPDTAARDALLAGIKASGWYGYFDHVNAASGTGGLESHLKALAEA</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="86" xmlns="http://uniprot.org/uniprot">
    <accession>A9C0J1</accession>
    <name>A9C0J1_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="5 7">3-dehydroquinate dehydratase</fullName>
            <shortName evidence="7">3-dehydroquinase</shortName>
            <ecNumber evidence="5 7">4.2.1.10</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="7">Type II DHQase</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="7" type="primary">aroQ</name>
        <name evidence="11" type="ordered locus">Daci_4434</name>
    </gene>
    <organism evidence="11 12">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="11 12" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="12">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="12" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="12">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="7">Catalyzes a trans-dehydration via an enolate intermediate.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1 7">
            <text>3-dehydroquinate = 3-dehydroshikimate + H2O</text>
            <dbReference type="Rhea" id="RHEA:21096"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:16630"/>
            <dbReference type="ChEBI" id="CHEBI:32364"/>
            <dbReference type="EC" id="4.2.1.10"/>
        </reaction>
    </comment>
    <comment type="pathway">
        <text evidence="2 7">Metabolic intermediate biosynthesis; chorismate biosynthesis; chorismate from D-erythrose 4-phosphate and phosphoenolpyruvate: step 3/7.</text>
    </comment>
    <comment type="subunit">
        <text evidence="4 7">Homododecamer.</text>
    </comment>
    <comment type="similarity">
        <text evidence="3 7">Belongs to the type-II 3-dehydroquinase family.</text>
    </comment>
    <dbReference type="EC" id="4.2.1.10" evidence="5 7"/>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX37064.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012206236.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_4434"/>
    <dbReference type="EnsemblBacteria" id="ABX37064">
        <property type="protein sequence ID" value="ABX37064"/>
        <property type="gene ID" value="Daci_4434"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_4434"/>
    <dbReference type="eggNOG" id="COG0757">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_090968_1_0_4"/>
    <dbReference type="OMA" id="EGAMCER"/>
    <dbReference type="UniPathway" id="UPA00053">
        <property type="reaction ID" value="UER00086"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003855">
        <property type="term" value="F:3-dehydroquinate dehydratase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009073">
        <property type="term" value="P:aromatic amino acid family biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008652">
        <property type="term" value="P:cellular amino acid biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009423">
        <property type="term" value="P:chorismate biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniPathway"/>
    </dbReference>
    <dbReference type="CDD" id="cd00466">
        <property type="entry name" value="DHQase_II"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.9100">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00169">
        <property type="entry name" value="AroQ"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001874">
        <property type="entry name" value="DHquinase_II"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036441">
        <property type="entry name" value="DHquinase_II_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR21272">
        <property type="entry name" value="PTHR21272"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01220">
        <property type="entry name" value="DHquinase_II"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF001399">
        <property type="entry name" value="DHquinase_II"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52304">
        <property type="entry name" value="SSF52304"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01088">
        <property type="entry name" value="aroQ"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="7" id="KW-0028">Amino-acid biosynthesis</keyword>
    <keyword evidence="7" id="KW-0057">Aromatic amino acid biosynthesis</keyword>
    <keyword evidence="6 7 11" id="KW-0456">Lyase</keyword>
    <keyword evidence="12" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Substrate binding" evidence="7 9">
        <location>
            <begin position="102"/>
            <end position="103"/>
        </location>
    </feature>
    <feature type="active site" description="Proton acceptor" evidence="7 8">
        <location>
            <position position="23"/>
        </location>
    </feature>
    <feature type="active site" description="Proton donor" evidence="7 8">
        <location>
            <position position="101"/>
        </location>
    </feature>
    <feature type="binding site" evidence="7 9">
        <location>
            <position position="75"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="7 9">
        <location>
            <position position="81"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="7 9">
        <location>
            <position position="88"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="7 9">
        <location>
            <position position="112"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="site" description="Transition state stabilizer" evidence="7 10">
        <location>
            <position position="18"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001864"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00004902"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00011037"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00011193"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00012060"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023239"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00169"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="PIRSR" id="PIRSR001399-1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="PIRSR" id="PIRSR001399-2"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="PIRSR" id="PIRSR001399-3"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="EMBL" id="ABX37064.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="145" mass="15844" checksum="C45A03940EB9E2C4" modified="2008-01-15" version="1">MKKILMLHGINHNMFGQRDPAQYGTVTLAEIDVSLRSLGSQLGCEVDSFQTNCEGAMCDRIHQGFRDGVDGVLINAGAWTHYSYGIRDALAMLTVPVVEIHMSNIHAREPFRHHSVFADIARGQICGFGADSYLLGLRAVLSAVA</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="55" xmlns="http://uniprot.org/uniprot">
    <accession>A9C0J7</accession>
    <name>A9C0J7_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">DUF4440 domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_4440</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX37070.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012206242.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_4440"/>
    <dbReference type="PRIDE" id="A9C0J7"/>
    <dbReference type="EnsemblBacteria" id="ABX37070">
        <property type="protein sequence ID" value="ABX37070"/>
        <property type="gene ID" value="Daci_4440"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_4440"/>
    <dbReference type="eggNOG" id="COG4994">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_119560_1_0_4"/>
    <dbReference type="OMA" id="QMRFHQG"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027843">
        <property type="entry name" value="DUF4440"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR032710">
        <property type="entry name" value="NTF2-like_dom_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF14534">
        <property type="entry name" value="DUF4440"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54427">
        <property type="entry name" value="SSF54427"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="DUF4440" evidence="1">
        <location>
            <begin position="27"/>
            <end position="133"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF14534"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX37070.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="151" mass="16232" checksum="A4B347DF33F9EE9A" modified="2008-01-15" version="1">MVNDMAMAQLPDLDMHGGDVRLLQHLQALEVRLHDPQVRSDAGQLQALLHEDFLEFGRSGGVHDRAATVDSLAAALPAQAPARLVSGGFALARLGPDSALLTYRSASVAEDGTAGRHTLRSSVWLRTARGWQMRFHQGTPTAPFDLAASMP</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="55" xmlns="http://uniprot.org/uniprot">
    <accession>A9C0K6</accession>
    <name>A9C0K6_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Amidohydrolase 2</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Daci_4449</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="4" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX37079.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012206251.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_4449"/>
    <dbReference type="PRIDE" id="A9C0K6"/>
    <dbReference type="EnsemblBacteria" id="ABX37079">
        <property type="protein sequence ID" value="ABX37079"/>
        <property type="gene ID" value="Daci_4449"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_4449"/>
    <dbReference type="eggNOG" id="COG2159">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_813586_0_0_4"/>
    <dbReference type="OMA" id="IHGHYTT"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016831">
        <property type="term" value="F:carboxy-lyase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016787">
        <property type="term" value="F:hydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR032465">
        <property type="entry name" value="ACMSD"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006680">
        <property type="entry name" value="Amidohydro-rel"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR032466">
        <property type="entry name" value="Metal_Hydrolase"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR21240">
        <property type="entry name" value="PTHR21240"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04909">
        <property type="entry name" value="Amidohydro_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51556">
        <property type="entry name" value="SSF51556"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="1" id="KW-0456">Lyase</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Amidohydro-rel" evidence="2">
        <location>
            <begin position="3"/>
            <end position="331"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023239"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF04909"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ABX37079.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="342" mass="38335" checksum="6AE44A3D603EDE4B" modified="2008-01-15" version="1">MIIDVHGHYTTAPAALGAWRDLQIAGLKDPSKAPRASDLKISDDEIRETIETNQLKLMKQRGSDLTIFSPRASFMAHHIGDFQTSSTWAAICNELCYRVSELFPEHFIPAAMLPQSPGVDPATCIPELVKCVEQYGNVGINLNPDPSGGHWTSPPLSDRSWYPIYEKMVEYDIPAMVHVSTSCNACFHTTGAHYLNADTTAFMQCLTSDLFKDFPTLKFLIPHGGGAVPYHWGRFRGLAQELKKPLLDEHLLNNIFFDTCVYHQPGIDLLTKVIPVKNILFASEMIGAVRGIDPTTGHYYDDTKRYIEATANLTEEERYQVYEGNARRVFPRMDAALKQKGL</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="63" xmlns="http://uniprot.org/uniprot">
    <accession>A9C0N8</accession>
    <name>A9C0N8_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="5">YD repeat protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ordered locus">Daci_4482</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="6" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX37111.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_4482"/>
    <dbReference type="PRIDE" id="A9C0N8"/>
    <dbReference type="EnsemblBacteria" id="ABX37111">
        <property type="protein sequence ID" value="ABX37111"/>
        <property type="gene ID" value="Daci_4482"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_4482"/>
    <dbReference type="eggNOG" id="COG3209">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_001218_0_1_4"/>
    <dbReference type="OMA" id="ATHQKYY"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045351">
        <property type="entry name" value="DUF6531"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029118">
        <property type="entry name" value="Ntox16"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001826">
        <property type="entry name" value="RHS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR022385">
        <property type="entry name" value="Rhs_assc_core"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR031325">
        <property type="entry name" value="RHS_repeat"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006530">
        <property type="entry name" value="YD"/>
    </dbReference>
    <dbReference type="Pfam" id="PF20148">
        <property type="entry name" value="DUF6531"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF15523">
        <property type="entry name" value="Ntox16"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03527">
        <property type="entry name" value="RHS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF05593">
        <property type="entry name" value="RHS_repeat"/>
        <property type="match status" value="5"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00394">
        <property type="entry name" value="RHSPROTEIN"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR03696">
        <property type="entry name" value="Rhs_assc_core"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01643">
        <property type="entry name" value="YD_repeat_2x"/>
        <property type="match status" value="6"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0472">Membrane</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="2" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="1391"/>
            <end position="1410"/>
        </location>
    </feature>
    <feature type="domain" description="DUF6531" evidence="4">
        <location>
            <begin position="45"/>
            <end position="126"/>
        </location>
    </feature>
    <feature type="domain" description="Ntox16" evidence="3">
        <location>
            <begin position="1446"/>
            <end position="1526"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="511"/>
            <end position="538"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="966"/>
            <end position="1000"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="967"/>
            <end position="982"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF15523"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="Pfam" id="PF20148"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="ABX37111.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="1528" mass="167523" checksum="B0B3989977CC3961" modified="2008-01-15" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="61" xmlns="http://uniprot.org/uniprot">
    <accession>A9C0X9</accession>
    <name>A9C0X9_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="6">Fanconi-associated nuclease</fullName>
            <ecNumber evidence="6">3.1.4.1</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="8" type="ordered locus">Daci_5814</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="9" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="6">Nuclease required for the repair of DNA interstrand cross-links (ICL). Acts as a 5'-3' exonuclease that anchors at a cut end of DNA and cleaves DNA successively at every third nucleotide, allowing to excise an ICL from one strand through flanking incisions.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1 6">
            <text>Hydrolytically removes 5'-nucleotides successively from the 3'-hydroxy termini of 3'-hydroxy-terminated oligonucleotides.</text>
            <dbReference type="EC" id="3.1.4.1"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="6">
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </cofactor>
        <cofactor evidence="6">
            <name>Mn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29035"/>
        </cofactor>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="6">Nucleus</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2 6">Belongs to the FAN1 family.</text>
    </comment>
    <dbReference type="EC" id="3.1.4.1" evidence="6"/>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX38442.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012207611.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_5814"/>
    <dbReference type="PRIDE" id="A9C0X9"/>
    <dbReference type="EnsemblBacteria" id="ABX38442">
        <property type="protein sequence ID" value="ABX38442"/>
        <property type="gene ID" value="Daci_5814"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_5814"/>
    <dbReference type="eggNOG" id="COG2176">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_036183_0_0_4"/>
    <dbReference type="OMA" id="QDNQIRW"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003676">
        <property type="term" value="F:nucleic acid binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004528">
        <property type="term" value="F:phosphodiesterase I activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0036297">
        <property type="term" value="P:interstrand cross-link repair"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.25.40.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.1350.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR033315">
        <property type="entry name" value="Fan1-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR040603">
        <property type="entry name" value="FAN1_SAP"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011990">
        <property type="entry name" value="TPR-like_helical_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011856">
        <property type="entry name" value="tRNA_endonuc-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014883">
        <property type="entry name" value="VRR_NUC"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR15749">
        <property type="entry name" value="PTHR15749"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="Pfam" id="PF18081">
        <property type="entry name" value="FANC_SAP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08774">
        <property type="entry name" value="VRR_NUC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00990">
        <property type="entry name" value="VRR_NUC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48452">
        <property type="entry name" value="SSF48452"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="6" id="KW-0227">DNA damage</keyword>
    <keyword evidence="6" id="KW-0234">DNA repair</keyword>
    <keyword evidence="4 6" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="6" id="KW-0460">Magnesium</keyword>
    <keyword evidence="5 6" id="KW-0464">Manganese</keyword>
    <keyword evidence="6" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="3 6" id="KW-0540">Nuclease</keyword>
    <keyword evidence="6" id="KW-0539">Nucleus</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="VRR-NUC" evidence="7">
        <location>
            <begin position="435"/>
            <end position="549"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00000983"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00005533"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022722"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023211"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="RuleBase" id="RU365033"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="SMART" id="SM00990"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="ABX38442.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="558" mass="63105" checksum="518E4CB58FB4E905" modified="2008-01-15" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="59" xmlns="http://uniprot.org/uniprot">
    <accession>A9C171</accession>
    <name>A9C171_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="7">Peptidase M23B</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ordered locus">Daci_5906</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="8" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </cofactor>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="2">Membrane</location>
            <topology evidence="2">Single-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX38534.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012207703.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_5906"/>
    <dbReference type="PRIDE" id="A9C171"/>
    <dbReference type="EnsemblBacteria" id="ABX38534">
        <property type="protein sequence ID" value="ABX38534"/>
        <property type="gene ID" value="Daci_5906"/>
    </dbReference>
    <dbReference type="GeneID" id="60690267"/>
    <dbReference type="KEGG" id="dac:Daci_5906"/>
    <dbReference type="eggNOG" id="COG0739">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_026846_4_1_4"/>
    <dbReference type="OMA" id="GPHVCYR"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016020">
        <property type="term" value="C:membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016787">
        <property type="term" value="F:hydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.70.70.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045834">
        <property type="entry name" value="Csd3_N2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011055">
        <property type="entry name" value="Dup_hybrid_motif"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016047">
        <property type="entry name" value="Peptidase_M23"/>
    </dbReference>
    <dbReference type="Pfam" id="PF19425">
        <property type="entry name" value="Csd3_N2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01551">
        <property type="entry name" value="Peptidase_M23"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51261">
        <property type="entry name" value="SSF51261"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="3" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Csd3_N2" evidence="6">
        <location>
            <begin position="195"/>
            <end position="312"/>
        </location>
    </feature>
    <feature type="domain" description="Peptidase_M23" evidence="5">
        <location>
            <begin position="325"/>
            <end position="419"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001947"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00004167"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="Pfam" id="PF01551"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="Pfam" id="PF19425"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="ABX38534.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="464" mass="50048" checksum="D8F82B848EA353FA" modified="2008-01-15" version="1">MRATQGSDVVKYGLNHASGALVARLTSVIQQHPKRVTAALAAILLTGGGGAFAVANLGPDPADLPVRMLSTPVESLAEGQTLAELTDSVQGMSLYRSEYTRGSDTAETLLQRLGVADPAAAAFMRGNDQVRQHVLGRAGRLVTAETTPDHQLSQLTVRWAPDEDGSFRRLVVERKNNELSTRIETGKLTASPRLAGGIIRSSLFAATDAASIPDAVAMQMADIFQGDVDFRRSLRKGDRFSVVYESLEADGEPLRAGRVLSAEFHNNGKVVQALWFQDEGKAKGDYYTMDGKSRRQAYLTSPVEFSRISSGFAMRMHPIHKTWRAHLGTDFAAATGTKVRTVGDGTVSFAGVQNGYGNVIFVDHANNHTTVYAHLSHIGVTRGQRVEQGDIIGNVGSTGWATGPHLHFEFRVNGEHRDPMTIVQATDAARPVSKAGRAAFDKMAAQMRIELQASNEALALASER</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-01-19" version="53" xmlns="http://uniprot.org/uniprot">
    <accession>A9C1E8</accession>
    <name>A9C1E8_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="9">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="9" type="ordered locus">Daci_5983</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="9 10" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="10" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="2">Cell membrane</location>
            <topology evidence="2">Multi-pass membrane protein</topology>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="3">Belongs to the UPF0702 family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX38611.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012207780.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_5983"/>
    <dbReference type="EnsemblBacteria" id="ABX38611">
        <property type="protein sequence ID" value="ABX38611"/>
        <property type="gene ID" value="Daci_5983"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_5983"/>
    <dbReference type="eggNOG" id="COG2323">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_077149_3_1_4"/>
    <dbReference type="OMA" id="AVPMQNT"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.240.20">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007353">
        <property type="entry name" value="DUF421"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023090">
        <property type="entry name" value="UPF0702_alpha/beta_dom_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04239">
        <property type="entry name" value="DUF421"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="7 8" id="KW-0472">Membrane</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="5 8" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="6 8" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="6"/>
            <end position="26"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="62"/>
            <end position="85"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00004651"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00006448"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="ABX38611.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="165" mass="18540" checksum="A61B796E80B74D25" modified="2008-01-15" version="1">MFSMSVPWWEFVVRGVAVYLFLLVFLRLTGRRQTGQYAPFDLVLLLILSNAVQNSMNAGDNSLIGGMVSASTLILCHLLLSWLTFRFPALERLIDGKAKALIRDGHLNKDLMREERITRDDIEAALRAGGCLHLREVERATLETDGSITVVLRRRDSENDGDPPV</sequence>
</entry>
<entry dataset="Swiss-Prot" created="2009-03-24" modified="2022-08-03" version="88" xmlns="http://uniprot.org/uniprot">
    <accession>A9C1G8</accession>
    <name>SYL_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Leucine--tRNA ligase</fullName>
            <ecNumber evidence="1">6.1.1.4</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="1">Leucyl-tRNA synthetase</fullName>
            <shortName evidence="1">LeuRS</shortName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="1" type="primary">leuS</name>
        <name type="ordered locus">Daci_6003</name>
    </gene>
    <organism>
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference key="1">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain>DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>ATP + L-leucine + tRNA(Leu) = AMP + diphosphate + L-leucyl-tRNA(Leu)</text>
            <dbReference type="Rhea" id="RHEA:11688"/>
            <dbReference type="Rhea" id="RHEA-COMP:9613"/>
            <dbReference type="Rhea" id="RHEA-COMP:9622"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:33019"/>
            <dbReference type="ChEBI" id="CHEBI:57427"/>
            <dbReference type="ChEBI" id="CHEBI:78442"/>
            <dbReference type="ChEBI" id="CHEBI:78494"/>
            <dbReference type="ChEBI" id="CHEBI:456215"/>
            <dbReference type="EC" id="6.1.1.4"/>
        </reaction>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="1">Belongs to the class-I aminoacyl-tRNA synthetase family.</text>
    </comment>
    <dbReference type="EC" id="6.1.1.4" evidence="1"/>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX38631.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012207800.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A9C1G8"/>
    <dbReference type="SMR" id="A9C1G8"/>
    <dbReference type="STRING" id="398578.Daci_6003"/>
    <dbReference type="PRIDE" id="A9C1G8"/>
    <dbReference type="EnsemblBacteria" id="ABX38631">
        <property type="protein sequence ID" value="ABX38631"/>
        <property type="gene ID" value="Daci_6003"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_6003"/>
    <dbReference type="eggNOG" id="COG0495">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_004427_0_0_4"/>
    <dbReference type="OMA" id="TFMVLAP"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0002161">
        <property type="term" value="F:aminoacyl-tRNA editing activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004823">
        <property type="term" value="F:leucine-tRNA ligase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006429">
        <property type="term" value="P:leucyl-tRNA aminoacylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.620">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.740.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00049_B">
        <property type="entry name" value="Leu_tRNA_synth_B"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001412">
        <property type="entry name" value="aa-tRNA-synth_I_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002300">
        <property type="entry name" value="aa-tRNA-synth_Ia"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002302">
        <property type="entry name" value="Leu-tRNA-ligase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025709">
        <property type="entry name" value="Leu_tRNA-synth_edit"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013155">
        <property type="entry name" value="M/V/L/I-tRNA-synth_anticd-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015413">
        <property type="entry name" value="Methionyl/Leucyl_tRNA_Synth"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014729">
        <property type="entry name" value="Rossmann-like_a/b/a_fold"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009080">
        <property type="entry name" value="tRNAsynth_Ia_anticodon-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009008">
        <property type="entry name" value="Val/Leu/Ile-tRNA-synth_edit"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43740">
        <property type="entry name" value="PTHR43740"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08264">
        <property type="entry name" value="Anticodon_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00133">
        <property type="entry name" value="tRNA-synt_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13603">
        <property type="entry name" value="tRNA-synt_1_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF09334">
        <property type="entry name" value="tRNA-synt_1g"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00985">
        <property type="entry name" value="TRNASYNTHLEU"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47323">
        <property type="entry name" value="SSF47323"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50677">
        <property type="entry name" value="SSF50677"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00396">
        <property type="entry name" value="leuS_bact"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00178">
        <property type="entry name" value="AA_TRNA_LIGASE_I"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword id="KW-0030">Aminoacyl-tRNA synthetase</keyword>
    <keyword id="KW-0067">ATP-binding</keyword>
    <keyword id="KW-0963">Cytoplasm</keyword>
    <keyword id="KW-0436">Ligase</keyword>
    <keyword id="KW-0547">Nucleotide-binding</keyword>
    <keyword id="KW-0648">Protein biosynthesis</keyword>
    <keyword id="KW-1185">Reference proteome</keyword>
    <feature type="chain" id="PRO_1000091312" description="Leucine--tRNA ligase">
        <location>
            <begin position="1"/>
            <end position="911"/>
        </location>
    </feature>
    <feature type="short sequence motif" description="'HIGH' region">
        <location>
            <begin position="42"/>
            <end position="52"/>
        </location>
    </feature>
    <feature type="short sequence motif" description="'KMSKS' region">
        <location>
            <begin position="659"/>
            <end position="663"/>
        </location>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <position position="662"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000255" key="1">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00049"/>
        </source>
    </evidence>
    <sequence length="911" mass="101345" checksum="BBEBCBD4F02DA4FD" modified="2008-01-15" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="56" xmlns="http://uniprot.org/uniprot">
    <accession>A9C1W3</accession>
    <name>A9C1W3_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Putative ParB-like nuclease</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Daci_2660</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="2" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX35298.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012204544.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_2660"/>
    <dbReference type="PRIDE" id="A9C1W3"/>
    <dbReference type="EnsemblBacteria" id="ABX35298">
        <property type="protein sequence ID" value="ABX35298"/>
        <property type="gene ID" value="Daci_2660"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_2660"/>
    <dbReference type="eggNOG" id="COG4318">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_090314_0_0_4"/>
    <dbReference type="OMA" id="PYHEFRW"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="CDD" id="cd16390">
        <property type="entry name" value="ParB_N_Srx_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036086">
        <property type="entry name" value="ParB/Sulfiredoxin_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014956">
        <property type="entry name" value="ParBc_2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016932">
        <property type="entry name" value="UCP029669"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08857">
        <property type="entry name" value="ParBc_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF029669">
        <property type="entry name" value="UCP029669"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF110849">
        <property type="entry name" value="SSF110849"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ABX35298.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="212" mass="24296" checksum="E5DC0AECC2D127A5" modified="2008-01-15" version="1">MRAQQHLTRVSLDALRPTQMTIGAAEVQTKRAQWSRLKRKEREGVLASHWFPAVLGPRGLHYIVDHHHLGLALTQESVEQVWVMQLADFSEADPLMFWRLMEFHQWAHPYDERGRRCDWTKMPEQLDRLRDDPYRSLAGAVRKAGGYAKDTAPFVEFLWADFFRTRFAPKDLRSGKSDVALPDQALHEALGLAHGAEARYLPGWSGVVAPQS</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="60" xmlns="http://uniprot.org/uniprot">
    <accession>A9C226</accession>
    <name>A9C226_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="3">4-hydroxyphenylacetate 3-hydroxylase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Daci_3024</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="4" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX35662.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012204868.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_3024"/>
    <dbReference type="PRIDE" id="A9C226"/>
    <dbReference type="EnsemblBacteria" id="ABX35662">
        <property type="protein sequence ID" value="ABX35662"/>
        <property type="gene ID" value="Daci_3024"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_3024"/>
    <dbReference type="eggNOG" id="COG2368">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_023920_2_1_4"/>
    <dbReference type="OMA" id="GWDALNT"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016627">
        <property type="term" value="F:oxidoreductase activity, acting on the CH-CH group of donors"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.110.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR046373">
        <property type="entry name" value="Acyl-CoA_Oxase/DH_mid-dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036250">
        <property type="entry name" value="AcylCo_DH-like_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009100">
        <property type="entry name" value="AcylCoA_DH/oxidase_NM_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004925">
        <property type="entry name" value="HpaB/PvcC/4-BUDH"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR024719">
        <property type="entry name" value="HpaB/PvcC/4-BUDH_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR024674">
        <property type="entry name" value="HpaB/PvcC/4-BUDH_N"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR36117">
        <property type="entry name" value="PTHR36117"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03241">
        <property type="entry name" value="HpaB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF11794">
        <property type="entry name" value="HpaB_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF000331">
        <property type="entry name" value="HpaA_HpaB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47203">
        <property type="entry name" value="SSF47203"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56645">
        <property type="entry name" value="SSF56645"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HpaB_N" evidence="2">
        <location>
            <begin position="4"/>
            <end position="268"/>
        </location>
    </feature>
    <feature type="domain" description="HpaB" evidence="1">
        <location>
            <begin position="280"/>
            <end position="474"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF03241"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF11794"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ABX35662.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="504" mass="56669" checksum="07F1D4C14216FB92" modified="2008-01-15" version="1">MIRTGSQYRDSIRDGRRVWMNGERVKDVTTHPMFKPLVDIRARMYDLQHEAALRDALTCDEGDGERHPIAHKLPLTRQDWWDKRRATDLLLEDMGGVVMRVGDESVGEMWSLFDGQDVLNELDPRFSANIRTHIRRVVRGDLFHVSANTDPKGDRSRLPQDQDPDVLLHVVKETDAGVIVRGAKYETAAAYANQAFTKPGLAHWGDAAQSEYAIGFICDLGAPGLRFICRPGLAARASAQDHPLSHRFDEVDAIVVFDDVLVPWENVLFYRHTRAAHFLRETLHRYSAFTFLQRSLKLADMLIGTALHNARQTGVEKLQAVQDRLAGLACYREGINAHLTAAIALAERSPAGLMMPNQSLLFTGRSLATSQLHHMMNTVRELCGGQVCLTPDHASFENEDTGPWLRKFYTLGPQWQADDRRKLLAYARDLLDSDHAGHRLSFQLFAQCPPYAQTAAVYRHFNWDAPLDFVGKSAGLTDRVKATQAPAQGDGAVAQWFRNHNTSD</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="52" xmlns="http://uniprot.org/uniprot">
    <accession>A9C265</accession>
    <name>A9C265_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Transglutaminase domain protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_3063</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX35701.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_3063"/>
    <dbReference type="PRIDE" id="A9C265"/>
    <dbReference type="EnsemblBacteria" id="ABX35701">
        <property type="protein sequence ID" value="ABX35701"/>
        <property type="gene ID" value="Daci_3063"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_3063"/>
    <dbReference type="eggNOG" id="COG1305">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_064253_1_0_4"/>
    <dbReference type="OMA" id="RDFAHLM"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038765">
        <property type="entry name" value="Papain-like_cys_pep_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002931">
        <property type="entry name" value="Transglutaminase-like"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01841">
        <property type="entry name" value="Transglut_core"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00460">
        <property type="entry name" value="TGc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54001">
        <property type="entry name" value="SSF54001"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="TGc" evidence="1">
        <location>
            <begin position="218"/>
            <end position="282"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="SMART" id="SM00460"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX35701.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="367" mass="39877" checksum="88181E9FE23AA5B0" modified="2008-01-15" version="1">MLAEFAPQAGLLPGARAVPAKHYRLFSRGLRPAGVAARTMVPIRHTNQGQTMANAAIRLQIQVDLAYDIRDPAGADFVFNIHAAHTSHQTVENERLVLSQPVEPDIATEPATSTRFMRLHANPGPLHLTYKATVCIAHHREDPAALGEVPVRCIPLEVLPYIYPSRYCQSDRLMQLAFRNFGQLAPGYSRVLAIQQWVQELVTFASATSNSSTSAVDTLVEQVGVCRDFTHLMIALCRALNIPARIATGTDYGADPALGPPDFHAYVEAYLGDRWYLFDASGTAIPMGFMRFGTGRDAADVAFATIFGNVVAMAPMIQTQALEDEHSQLPRLCSEALSTTAPSPAVLSGCASFGSTADRRSFRQLPA</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="73" xmlns="http://uniprot.org/uniprot">
    <accession>A9C282</accession>
    <name>A9C282_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="4 6">Thymidylate kinase</fullName>
            <ecNumber evidence="3 6">2.7.4.9</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="5 6">dTMP kinase</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="6" type="primary">tmk</name>
        <name evidence="8" type="ordered locus">Daci_3388</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="9" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="6">Phosphorylation of dTMP to form dTDP in both de novo and salvage pathways of dTTP synthesis.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1 6">
            <text>ATP + dTMP = ADP + dTDP</text>
            <dbReference type="Rhea" id="RHEA:13517"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:58369"/>
            <dbReference type="ChEBI" id="CHEBI:63528"/>
            <dbReference type="ChEBI" id="CHEBI:456216"/>
            <dbReference type="EC" id="2.7.4.9"/>
        </reaction>
    </comment>
    <comment type="similarity">
        <text evidence="2 6">Belongs to the thymidylate kinase family.</text>
    </comment>
    <dbReference type="EC" id="2.7.4.9" evidence="3 6"/>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX36026.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012205226.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_3388"/>
    <dbReference type="PRIDE" id="A9C282"/>
    <dbReference type="EnsemblBacteria" id="ABX36026">
        <property type="protein sequence ID" value="ABX36026"/>
        <property type="gene ID" value="Daci_3388"/>
    </dbReference>
    <dbReference type="GeneID" id="60687640"/>
    <dbReference type="KEGG" id="dac:Daci_3388"/>
    <dbReference type="eggNOG" id="COG0125">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_049131_0_2_4"/>
    <dbReference type="OMA" id="VMTREPG"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004798">
        <property type="term" value="F:thymidylate kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006233">
        <property type="term" value="P:dTDP biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006235">
        <property type="term" value="P:dTTP biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016310">
        <property type="term" value="P:phosphorylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00165">
        <property type="entry name" value="Thymidylate_kinase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR039430">
        <property type="entry name" value="Thymidylate_kin-like_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018094">
        <property type="entry name" value="Thymidylate_kinase"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02223">
        <property type="entry name" value="Thymidylate_kin"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00041">
        <property type="entry name" value="DTMP_kinase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="6" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="6 8" id="KW-0418">Kinase</keyword>
    <keyword evidence="6" id="KW-0545">Nucleotide biosynthesis</keyword>
    <keyword evidence="6" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="6 8" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Thymidylate_kin" evidence="7">
        <location>
            <begin position="13"/>
            <end position="207"/>
        </location>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <begin position="15"/>
            <end position="22"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001008"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00009776"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00012980"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00017144"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00029962"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00165"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="Pfam" id="PF02223"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="ABX36026.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="228" mass="24608" checksum="3C4582C0A16842F7" modified="2008-01-15" version="1">MTTATPAGLFISFEGIDGAGKSSHIASLAQAFRDQGRTVTLTREPGGTPLAEKLRALMLHDAMDPLTEALIAFAARRDHLVQVIEPALARGEVVLCDRFTDATFAYQGAGRGFDLQPLATLERMVQTGTAPQPDLLREPHLTLWFDLPAEVAAERLASARVPDRFESEPGSFFARVAQGYAARAAAAPQRFARIDSNASRHAVWQQITQVMVRRGWLAIMVGGQAGAA</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="58" xmlns="http://uniprot.org/uniprot">
    <accession>A9C2G1</accession>
    <name>A9C2G1_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">GCN5-related N-acetyltransferase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_3469</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX36105.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012205305.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_3469"/>
    <dbReference type="PRIDE" id="A9C2G1"/>
    <dbReference type="EnsemblBacteria" id="ABX36105">
        <property type="protein sequence ID" value="ABX36105"/>
        <property type="gene ID" value="Daci_3469"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_3469"/>
    <dbReference type="eggNOG" id="COG0456">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_013985_32_1_4"/>
    <dbReference type="OMA" id="DGHIRYR"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008080">
        <property type="term" value="F:N-acetyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016181">
        <property type="entry name" value="Acyl_CoA_acyltransferase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000182">
        <property type="entry name" value="GNAT_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR032962">
        <property type="entry name" value="HPA2/HPA3"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10545:SF42">
        <property type="entry name" value="PTHR10545:SF42"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00583">
        <property type="entry name" value="Acetyltransf_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55729">
        <property type="entry name" value="SSF55729"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51186">
        <property type="entry name" value="GNAT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="N-acetyltransferase" evidence="1">
        <location>
            <begin position="8"/>
            <end position="158"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS51186"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX36105.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="158" mass="17837" checksum="26971BAB5EDF288E" modified="2008-01-15" version="1">MSSLVPPLQIRPVTQADHHQWLPLWQGYNAFYGRAGETALPEGITQATWERFLNPLEPVFALVAESEGELVGLAHYLFHRSTTRLEPVCYLQDLFADARRRKQGIGKSLIRAVYAQAAQAGARRVYWQTQSSNEAGRALYDQVAEHRGFIVYGHEVQG</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="42" xmlns="http://uniprot.org/uniprot">
    <accession>A9C2Y4</accession>
    <name>A9C2Y4_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_4157</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX36788.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012205966.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_4157"/>
    <dbReference type="PRIDE" id="A9C2Y4"/>
    <dbReference type="EnsemblBacteria" id="ABX36788">
        <property type="protein sequence ID" value="ABX36788"/>
        <property type="gene ID" value="Daci_4157"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_4157"/>
    <dbReference type="eggNOG" id="ENOG502Z9W9">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_056377_0_0_4"/>
    <dbReference type="OMA" id="EYRYINT"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR021960">
        <property type="entry name" value="DUF3577"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12101">
        <property type="entry name" value="DUF3577"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="251"/>
            <end position="304"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX36788.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="304" mass="33092" checksum="363E4CA9577BC1A4" modified="2008-01-15" version="1">MSTTSNEKSYFDLHTSGIGYIQRAREVPVRGGRRAQPFLACTIAALVGSAKDPSYRYFDVKVSGAEAKKLVERYIGVDDPKQRPLVRFRLGDLWGDAYIRDKGEQKGQAAASLKARLLKAEPLDRAELASIRQHELVTRGIGYLSRPKDVTPKDGDPFLSCTVAALAGPVDEPEYRYFDSIVTTPEAEHLVRRCVQAIEGDCKVLIAFRLNDMKIDPYIRTKGERAGEPAASLDSTLIHIGLIKIDGTKVYPTSPAQADSPPAQDAPAPEAEDAAPAADQPAEPAECEPEGEVEEQEPALAASF</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="48" xmlns="http://uniprot.org/uniprot">
    <accession>A9C2Z3</accession>
    <name>A9C2Z3_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Putative secreted protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_4166</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX36797.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012205975.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_4166"/>
    <dbReference type="PRIDE" id="A9C2Z3"/>
    <dbReference type="EnsemblBacteria" id="ABX36797">
        <property type="protein sequence ID" value="ABX36797"/>
        <property type="gene ID" value="Daci_4166"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_4166"/>
    <dbReference type="eggNOG" id="COG0695">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_091013_0_0_4"/>
    <dbReference type="OMA" id="RYGQGQM"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR022293">
        <property type="entry name" value="Integrating-conj_element"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR03759">
        <property type="entry name" value="conj_TIGR03759"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="1">
        <location>
            <begin position="1"/>
            <end position="21"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5002735325" evidence="1">
        <location>
            <begin position="22"/>
            <end position="245"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX36797.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="245" mass="27105" checksum="331B46EB26AECC7E" modified="2008-01-15" version="1">MKPSIILSALLLASAQLPAWAQQPATAPAGSAHSQERPLVTRSLDDRVAGDWGLQPQEWARYRELMDGPLGIYSPNLDPLSALGIEARTDEERRRYAELQVQVEARRIEKLLAYQRAYDQAWQRLSPGMQRVNLPDEKPGAGTSANPLRGSGRTAVFVKDGCAACGQLVQRLQSSGTEFDLYMVGSRQDDTRIRDWAKRANVDPARVRSGGITLNHDGGRWLSLSLPGDLPAVVREVNGQWQRQP</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="59" xmlns="http://uniprot.org/uniprot">
    <accession>A9C377</accession>
    <name>A9C377_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">DNA ligase III-like protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_4559</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX37188.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012206358.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_4559"/>
    <dbReference type="PRIDE" id="A9C377"/>
    <dbReference type="EnsemblBacteria" id="ABX37188">
        <property type="protein sequence ID" value="ABX37188"/>
        <property type="gene ID" value="Daci_4559"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_4559"/>
    <dbReference type="eggNOG" id="COG1423">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_081554_0_0_4"/>
    <dbReference type="OMA" id="QNRGQYL"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016874">
        <property type="term" value="F:ligase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR021122">
        <property type="entry name" value="RNA_ligase_dom_REL/Rnl2"/>
    </dbReference>
    <dbReference type="Pfam" id="PF09414">
        <property type="entry name" value="RNA_ligase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0436">Ligase</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="RNA_ligase" evidence="1">
        <location>
            <begin position="49"/>
            <end position="235"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF09414"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX37188.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="284" mass="32069" checksum="644AA39E828C11BB" modified="2008-01-15" version="1">MTPSIAQGAHFLSSVEILKYPRTPHLRGSRLQSGDQDDAVPYERLAGRHIVVEEKLDGANAALSFAGDGQLLLQSRGHYLDSERPGGRERQFNLFKQWAQAHEGALLSLLDDRYQVFGEWMYAKHSLFYDALPHWFCEFDIWDRSAQCFLDTPRRHALLAGVPVVSVPVLYSGAAPRRMQDLLALLAPSLGRSARWRQAFEQVVARQKLDLPLCWRQTDGSELAEGLYLKVEEDGQTVARYKFVRPDFVQVILDSGSHHSERPIVPNGLREGADIFAADISKSW</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="64" xmlns="http://uniprot.org/uniprot">
    <accession>A9BLL1</accession>
    <name>A9BLL1_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Peptidase S41</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ordered locus">Daci_3865</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="5" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX36496.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012205690.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_3865"/>
    <dbReference type="PRIDE" id="A9BLL1"/>
    <dbReference type="EnsemblBacteria" id="ABX36496">
        <property type="protein sequence ID" value="ABX36496"/>
        <property type="gene ID" value="Daci_3865"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_3865"/>
    <dbReference type="eggNOG" id="COG0793">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_368321_0_0_4"/>
    <dbReference type="OMA" id="IIDMRQN"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008236">
        <property type="term" value="F:serine-type peptidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006508">
        <property type="term" value="P:proteolysis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.30.42.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029045">
        <property type="entry name" value="ClpP/crotonase-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036034">
        <property type="entry name" value="PDZ_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005151">
        <property type="entry name" value="Tail-specific_protease"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03572">
        <property type="entry name" value="Peptidase_S41"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00245">
        <property type="entry name" value="TSPc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50156">
        <property type="entry name" value="SSF50156"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52096">
        <property type="entry name" value="SSF52096"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="2">
        <location>
            <begin position="1"/>
            <end position="26"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5002734862" evidence="2">
        <location>
            <begin position="27"/>
            <end position="763"/>
        </location>
    </feature>
    <feature type="domain" description="TSPc" evidence="3">
        <location>
            <begin position="505"/>
            <end position="729"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="82"/>
            <end position="105"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="SMART" id="SM00245"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="ABX36496.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="763" mass="78849" checksum="53AB582DC621B087" modified="2008-01-15" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="44" xmlns="http://uniprot.org/uniprot">
    <accession>A9BLN0</accession>
    <name>A9BLN0_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_3884</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX36515.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012205709.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_3884"/>
    <dbReference type="PRIDE" id="A9BLN0"/>
    <dbReference type="EnsemblBacteria" id="ABX36515">
        <property type="protein sequence ID" value="ABX36515"/>
        <property type="gene ID" value="Daci_3884"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_3884"/>
    <dbReference type="eggNOG" id="COG5266">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_093838_0_0_4"/>
    <dbReference type="OMA" id="KEAHTDA"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019613">
        <property type="entry name" value="DUF4198"/>
    </dbReference>
    <dbReference type="Pfam" id="PF10670">
        <property type="entry name" value="DUF4198"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="1">
        <location>
            <begin position="1"/>
            <end position="20"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5002735595" evidence="1">
        <location>
            <begin position="21"/>
            <end position="242"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX36515.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="242" mass="25789" checksum="19D088B89A334D02" modified="2008-01-15" version="1">MKKHWILVSALLAASGASQAHQIWLEQPAGETAVIRFGEFGDNLRETSPGLLDKFGKPVATLVSAQGEKAADGRKTGTGFALPFKAGQGDSIVAEDAGYPLYTSKKGEQELRNWYHPAARLITGFAAQASRLTLDVVPSGKAGEFKVIYKGQPLPKAKVVLTVQSGWSKEAHADEQGLVQFDMPWKGTYVAEATHDERSGGERTGPNGAEKYDGVHYVTSVTYVKPEGVAPIAAGPAAKPNK</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="65" xmlns="http://uniprot.org/uniprot">
    <accession>A9BLT3</accession>
    <name>A9BLT3_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="5">Thiol:disulfide interchange protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="7" type="ordered locus">Daci_4241</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="8" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="5">Required for disulfide bond formation in some periplasmic proteins. Acts by transferring its disulfide bond to other proteins and is reduced in the process.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1 5">Periplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2 5">Belongs to the thioredoxin family. DsbC subfamily.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX36872.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012206044.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_4241"/>
    <dbReference type="PRIDE" id="A9BLT3"/>
    <dbReference type="EnsemblBacteria" id="ABX36872">
        <property type="protein sequence ID" value="ABX36872"/>
        <property type="gene ID" value="Daci_4241"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_4241"/>
    <dbReference type="eggNOG" id="COG1651">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_080090_0_0_4"/>
    <dbReference type="OMA" id="CPYCNMF"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0042597">
        <property type="term" value="C:periplasmic space"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="CDD" id="cd03020">
        <property type="entry name" value="DsbA_DsbC_DsbG"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.10.450.70">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR033954">
        <property type="entry name" value="DiS-bond_Isoase_DsbC/G"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009094">
        <property type="entry name" value="DiS-bond_isomerase_DsbC/G_N_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012336">
        <property type="entry name" value="Thioredoxin-like_fold"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036249">
        <property type="entry name" value="Thioredoxin-like_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13098">
        <property type="entry name" value="Thioredoxin_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52833">
        <property type="entry name" value="SSF52833"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54423">
        <property type="entry name" value="SSF54423"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4 5" id="KW-0574">Periplasm</keyword>
    <keyword evidence="5" id="KW-0676">Redox-active center</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 5" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="5">
        <location>
            <begin position="1"/>
            <end position="28"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5010007639" description="Thiol:disulfide interchange protein" evidence="5">
        <location>
            <begin position="29"/>
            <end position="268"/>
        </location>
    </feature>
    <feature type="domain" description="Thioredoxin-like_fold" evidence="6">
        <location>
            <begin position="125"/>
            <end position="253"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004418"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00009813"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022729"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022764"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="RuleBase" id="RU364038"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="Pfam" id="PF13098"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="ABX36872.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="268" mass="28443" checksum="C0D9A55F14C94BEF" modified="2008-01-15" version="1">MSASPLFPLPALAGALALSAALALPAAASELPSEDFLAQQGLTLVGPLPAVGGLKAWAAYRDRQPVPIYRMPDGKHWVLGTVIDAQGRDVNAQALQAAVQKPMGEQLWGDVQRAQSIPDGRADAPRTVYVFTDPNCPYCNQLWNDARPWVESGQVQLRHILVGILKPSSEGKAAALLTTRQPEQALAEHARAYAKAGRASAEGAGATPLAPVPQATRQVLANHASLMSTWGLRATPALVWKDDKGLVQVRTGLPPGLLEEVMGPRGRK</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="63" xmlns="http://uniprot.org/uniprot">
    <accession>A9BLU1</accession>
    <name>A9BLU1_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="8">Major facilitator superfamily MFS_1</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="8" type="ordered locus">Daci_4249</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="9" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX36880.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012206052.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_4249"/>
    <dbReference type="PRIDE" id="A9BLU1"/>
    <dbReference type="EnsemblBacteria" id="ABX36880">
        <property type="protein sequence ID" value="ABX36880"/>
        <property type="gene ID" value="Daci_4249"/>
    </dbReference>
    <dbReference type="GeneID" id="60688512"/>
    <dbReference type="KEGG" id="dac:Daci_4249"/>
    <dbReference type="eggNOG" id="COG0477">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_023026_2_0_4"/>
    <dbReference type="OMA" id="EWRGLYL"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0022857">
        <property type="term" value="F:transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.1250.20">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011701">
        <property type="entry name" value="MFS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020846">
        <property type="entry name" value="MFS_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036259">
        <property type="entry name" value="MFS_trans_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07690">
        <property type="entry name" value="MFS_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF103473">
        <property type="entry name" value="SSF103473"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50850">
        <property type="entry name" value="MFS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4 6" id="KW-0472">Membrane</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 6" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="3 6" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="50"/>
            <end position="68"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="88"/>
            <end position="106"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="118"/>
            <end position="136"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="142"/>
            <end position="165"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="177"/>
            <end position="195"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="207"/>
            <end position="227"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="239"/>
            <end position="259"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="271"/>
            <end position="290"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="302"/>
            <end position="322"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="342"/>
            <end position="367"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="374"/>
            <end position="389"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="401"/>
            <end position="421"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="433"/>
            <end position="456"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="527"/>
            <end position="549"/>
        </location>
    </feature>
    <feature type="domain" description="MFS" evidence="7">
        <location>
            <begin position="52"/>
            <end position="550"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="5">
        <location>
            <begin position="1"/>
            <end position="40"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="5">
        <location>
            <begin position="568"/>
            <end position="591"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Pro residues" evidence="5">
        <location>
            <begin position="1"/>
            <end position="23"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="PROSITE" id="PS50850"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="ABX36880.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="591" mass="63769" checksum="C2DEAABA1627440F" modified="2008-01-15" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="81" xmlns="http://uniprot.org/uniprot">
    <accession>A9BLX6</accession>
    <name>A9BLX6_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Transcriptional regulator, LysR family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Daci_4284</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="4" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the LysR transcriptional regulatory family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX36915.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012206087.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_4284"/>
    <dbReference type="PRIDE" id="A9BLX6"/>
    <dbReference type="EnsemblBacteria" id="ABX36915">
        <property type="protein sequence ID" value="ABX36915"/>
        <property type="gene ID" value="Daci_4284"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_4284"/>
    <dbReference type="eggNOG" id="COG0583">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_039613_16_4_4"/>
    <dbReference type="OMA" id="LVYHDIR"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003700">
        <property type="term" value="F:DNA-binding transcription factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005119">
        <property type="entry name" value="LysR_subst-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000847">
        <property type="entry name" value="Tscrpt_reg_HTH_LysR"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036390">
        <property type="entry name" value="WH_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00126">
        <property type="entry name" value="HTH_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03466">
        <property type="entry name" value="LysR_substrate"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00039">
        <property type="entry name" value="HTHLYSR"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46785">
        <property type="entry name" value="SSF46785"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50931">
        <property type="entry name" value="HTH_LYSR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HTH lysR-type" evidence="2">
        <location>
            <begin position="1"/>
            <end position="59"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00009437"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS50931"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ABX36915.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="308" mass="33753" checksum="E642A18E725FCBDF" modified="2008-01-15" version="1">MDGFSDLRFFSLLIREGSLAAAAQQMGVTPPAVSRRLSLLERRLGVRLLQRTTRRIHLTPEGEAYLLDGARILADLEALERSISGTRATARGPLSIACTLGFGRQRLAPALSAFARAYPEVQVQLQLTDRPVNLVEQGFDAVVRFGALPDSALTARLLLPNRRVLCAAPSYLNAHGEPRQPADLQAHRCIVIRESDETYGSWRLSRRTRQGLSEHNIKVNGVMSTNDGAAALAWALDGHGILQRSLWDVAAPLAAGALREVLPQWQLPAADIYLVHATRSEMSARIRALTGFLGDWFAQRPEPDMAPA</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="112" xmlns="http://uniprot.org/uniprot">
    <accession>A9BM07</accession>
    <name>A9BM07_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="13 14">Multifunctional fusion protein</fullName>
        </recommendedName>
        <domain>
            <recommendedName>
                <fullName evidence="13">3-phosphoshikimate 1-carboxyvinyltransferase</fullName>
                <ecNumber evidence="13">2.5.1.19</ecNumber>
            </recommendedName>
            <alternativeName>
                <fullName evidence="13">5-enolpyruvylshikimate-3-phosphate synthase</fullName>
                <shortName evidence="13">EPSP synthase</shortName>
                <shortName evidence="13">EPSPS</shortName>
            </alternativeName>
        </domain>
        <domain>
            <recommendedName>
                <fullName evidence="14">Cytidylate kinase</fullName>
                <shortName evidence="14">CK</shortName>
                <ecNumber evidence="14">2.7.4.25</ecNumber>
            </recommendedName>
            <alternativeName>
                <fullName evidence="14">Cytidine monophosphate kinase</fullName>
                <shortName evidence="14">CMP kinase</shortName>
            </alternativeName>
        </domain>
    </protein>
    <gene>
        <name evidence="14" type="primary">cmk</name>
        <name evidence="13" type="synonym">aroA</name>
        <name evidence="17" type="ordered locus">Daci_4723</name>
    </gene>
    <organism evidence="17 18">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="17 18" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="18">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="18" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="18">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="13">Catalyzes the transfer of the enolpyruvyl moiety of phosphoenolpyruvate (PEP) to the 5-hydroxyl of shikimate-3-phosphate (S3P) to produce enolpyruvyl shikimate-3-phosphate and inorganic phosphate.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="3 13">
            <text>3-phosphoshikimate + phosphoenolpyruvate = 5-O-(1-carboxyvinyl)-3-phosphoshikimate + phosphate</text>
            <dbReference type="Rhea" id="RHEA:21256"/>
            <dbReference type="ChEBI" id="CHEBI:43474"/>
            <dbReference type="ChEBI" id="CHEBI:57701"/>
            <dbReference type="ChEBI" id="CHEBI:58702"/>
            <dbReference type="ChEBI" id="CHEBI:145989"/>
            <dbReference type="EC" id="2.5.1.19"/>
        </reaction>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1 14">
            <text>ATP + CMP = ADP + CDP</text>
            <dbReference type="Rhea" id="RHEA:11600"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:58069"/>
            <dbReference type="ChEBI" id="CHEBI:60377"/>
            <dbReference type="ChEBI" id="CHEBI:456216"/>
            <dbReference type="EC" id="2.7.4.25"/>
        </reaction>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="2 14">
            <text>ATP + dCMP = ADP + dCDP</text>
            <dbReference type="Rhea" id="RHEA:25094"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:57566"/>
            <dbReference type="ChEBI" id="CHEBI:58593"/>
            <dbReference type="ChEBI" id="CHEBI:456216"/>
            <dbReference type="EC" id="2.7.4.25"/>
        </reaction>
    </comment>
    <comment type="pathway">
        <text evidence="4 13">Metabolic intermediate biosynthesis; chorismate biosynthesis; chorismate from D-erythrose 4-phosphate and phosphoenolpyruvate: step 6/7.</text>
    </comment>
    <comment type="subunit">
        <text evidence="13">Monomer.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="13">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="6 13">Belongs to the EPSP synthase family.</text>
    </comment>
    <comment type="similarity">
        <text evidence="5 14">Belongs to the cytidylate kinase family. Type 1 subfamily.</text>
    </comment>
    <comment type="caution">
        <text evidence="13">Lacks conserved residue(s) required for the propagation of feature annotation.</text>
    </comment>
    <dbReference type="EC" id="2.5.1.19" evidence="13"/>
    <dbReference type="EC" id="2.7.4.25" evidence="14"/>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX37352.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012206522.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_4723"/>
    <dbReference type="PRIDE" id="A9BM07"/>
    <dbReference type="EnsemblBacteria" id="ABX37352">
        <property type="protein sequence ID" value="ABX37352"/>
        <property type="gene ID" value="Daci_4723"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_4723"/>
    <dbReference type="eggNOG" id="COG0128">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="eggNOG" id="COG0283">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_024321_2_0_4"/>
    <dbReference type="OMA" id="YEDHRMA"/>
    <dbReference type="UniPathway" id="UPA00053">
        <property type="reaction ID" value="UER00089"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003866">
        <property type="term" value="F:3-phosphoshikimate 1-carboxyvinyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0036430">
        <property type="term" value="F:CMP kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="RHEA"/>
    </dbReference>
    <dbReference type="GO" id="GO:0036431">
        <property type="term" value="F:dCMP kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="RHEA"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009073">
        <property type="term" value="P:aromatic amino acid family biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008652">
        <property type="term" value="P:cellular amino acid biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009423">
        <property type="term" value="P:chorismate biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniPathway"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016310">
        <property type="term" value="P:phosphorylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006220">
        <property type="term" value="P:pyrimidine nucleotide metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd02020">
        <property type="entry name" value="CMPK"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="CDD" id="cd01556">
        <property type="entry name" value="EPSP_synthase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.65.10.10">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00238">
        <property type="entry name" value="Cytidyl_kinase_type1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00210">
        <property type="entry name" value="EPSP_synth"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003136">
        <property type="entry name" value="Cytidylate_kin"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011994">
        <property type="entry name" value="Cytidylate_kinase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001986">
        <property type="entry name" value="Enolpyruvate_Tfrase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036968">
        <property type="entry name" value="Enolpyruvate_Tfrase_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006264">
        <property type="entry name" value="EPSP_synthase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023193">
        <property type="entry name" value="EPSP_synthase_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013792">
        <property type="entry name" value="RNA3'P_cycl/enolpyr_Trfase_a/b"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02224">
        <property type="entry name" value="Cytidylate_kin"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00275">
        <property type="entry name" value="EPSP_synthase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55205">
        <property type="entry name" value="SSF55205"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01356">
        <property type="entry name" value="aroA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00017">
        <property type="entry name" value="cmk"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00104">
        <property type="entry name" value="EPSP_SYNTHASE_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00885">
        <property type="entry name" value="EPSP_SYNTHASE_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="7 13" id="KW-0028">Amino-acid biosynthesis</keyword>
    <keyword evidence="12 13" id="KW-0057">Aromatic amino acid biosynthesis</keyword>
    <keyword evidence="11 14" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="13" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="10 14" id="KW-0418">Kinase</keyword>
    <keyword evidence="9 14" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="18" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="8 13 17" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="EPSP_synthase" evidence="15">
        <location>
            <begin position="13"/>
            <end position="441"/>
        </location>
    </feature>
    <feature type="domain" description="Cytidylate_kin" evidence="16">
        <location>
            <begin position="455"/>
            <end position="664"/>
        </location>
    </feature>
    <feature type="region of interest" description="Shikimate-3-phosphate binding" evidence="13">
        <location>
            <begin position="25"/>
            <end position="26"/>
        </location>
    </feature>
    <feature type="region of interest" description="Phosphoenolpyruvate" evidence="13">
        <location>
            <begin position="99"/>
            <end position="102"/>
        </location>
    </feature>
    <feature type="region of interest" description="Shikimate-3-phosphate binding" evidence="13">
        <location>
            <begin position="178"/>
            <end position="180"/>
        </location>
    </feature>
    <feature type="active site" description="Proton acceptor" evidence="13">
        <location>
            <position position="329"/>
        </location>
    </feature>
    <feature type="active site" description="Proton donor" evidence="13">
        <location>
            <position position="357"/>
        </location>
    </feature>
    <feature type="binding site" evidence="13">
        <location>
            <position position="30"/>
        </location>
        <ligand>
            <name>3-phosphoshikimate</name>
            <dbReference type="ChEBI" id="CHEBI:145989"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="13">
        <location>
            <position position="129"/>
        </location>
        <ligand>
            <name>phosphoenolpyruvate</name>
            <dbReference type="ChEBI" id="CHEBI:58702"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="13">
        <location>
            <position position="208"/>
        </location>
        <ligand>
            <name>3-phosphoshikimate</name>
            <dbReference type="ChEBI" id="CHEBI:145989"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="13">
        <location>
            <position position="356"/>
        </location>
        <ligand>
            <name>3-phosphoshikimate</name>
            <dbReference type="ChEBI" id="CHEBI:145989"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="13">
        <location>
            <position position="360"/>
        </location>
        <ligand>
            <name>phosphoenolpyruvate</name>
            <dbReference type="ChEBI" id="CHEBI:58702"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="13">
        <location>
            <position position="405"/>
        </location>
        <ligand>
            <name>phosphoenolpyruvate</name>
            <dbReference type="ChEBI" id="CHEBI:58702"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="13">
        <location>
            <position position="432"/>
        </location>
        <ligand>
            <name>phosphoenolpyruvate</name>
            <dbReference type="ChEBI" id="CHEBI:58702"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="14">
        <location>
            <begin position="459"/>
            <end position="467"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001097"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00001115"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00001901"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00004811"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00009427"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00009948"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022605"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00022777"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="12">
        <source>
            <dbReference type="ARBA" id="ARBA00023141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="13">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00210"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="14">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00238"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="15">
        <source>
            <dbReference type="Pfam" id="PF00275"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="16">
        <source>
            <dbReference type="Pfam" id="PF02224"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="17">
        <source>
            <dbReference type="EMBL" id="ABX37352.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="18">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="675" mass="72875" checksum="98A9DA1CFEDD0435" modified="2008-01-15" version="1"> </sequence>
</entry>
<entry dataset="Swiss-Prot" created="2009-04-14" modified="2022-08-03" version="75" xmlns="http://uniprot.org/uniprot">
    <accession>A9BML0</accession>
    <name>RLME_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Ribosomal RNA large subunit methyltransferase E</fullName>
            <ecNumber evidence="1">2.1.1.166</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="1">23S rRNA Um2552 methyltransferase</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="1">rRNA (uridine-2'-O-)-methyltransferase</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="1" type="primary">rlmE</name>
        <name evidence="1" type="synonym">ftsJ</name>
        <name evidence="1" type="synonym">rrmJ</name>
        <name type="ordered locus">Daci_4926</name>
    </gene>
    <organism>
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference key="1">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain>DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="1">Specifically methylates the uridine in position 2552 of 23S rRNA at the 2'-O position of the ribose in the fully assembled 50S ribosomal subunit.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>S-adenosyl-L-methionine + uridine(2552) in 23S rRNA = 2'-O-methyluridine(2552) in 23S rRNA + H(+) + S-adenosyl-L-homocysteine</text>
            <dbReference type="Rhea" id="RHEA:42720"/>
            <dbReference type="Rhea" id="RHEA-COMP:10202"/>
            <dbReference type="Rhea" id="RHEA-COMP:10203"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:57856"/>
            <dbReference type="ChEBI" id="CHEBI:59789"/>
            <dbReference type="ChEBI" id="CHEBI:65315"/>
            <dbReference type="ChEBI" id="CHEBI:74478"/>
            <dbReference type="EC" id="2.1.1.166"/>
        </reaction>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="1">Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA methyltransferase RlmE family.</text>
    </comment>
    <dbReference type="EC" id="2.1.1.166" evidence="1"/>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX37555.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012206725.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A9BML0"/>
    <dbReference type="SMR" id="A9BML0"/>
    <dbReference type="STRING" id="398578.Daci_4926"/>
    <dbReference type="PRIDE" id="A9BML0"/>
    <dbReference type="EnsemblBacteria" id="ABX37555">
        <property type="protein sequence ID" value="ABX37555"/>
        <property type="gene ID" value="Daci_4926"/>
    </dbReference>
    <dbReference type="GeneID" id="60689270"/>
    <dbReference type="KEGG" id="dac:Daci_4926"/>
    <dbReference type="eggNOG" id="COG0293">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_009422_4_1_4"/>
    <dbReference type="OMA" id="HRQTDHL"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008650">
        <property type="term" value="F:rRNA (uridine-2'-O-)-methyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.150">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01547">
        <property type="entry name" value="RNA_methyltr_E"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002877">
        <property type="entry name" value="RNA_MeTrfase_FtsJ_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015507">
        <property type="entry name" value="rRNA-MeTfrase_E"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029063">
        <property type="entry name" value="SAM-dependent_MTases_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01728">
        <property type="entry name" value="FtsJ"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF005461">
        <property type="entry name" value="23S_rRNA_mtase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53335">
        <property type="entry name" value="SSF53335"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword id="KW-0963">Cytoplasm</keyword>
    <keyword id="KW-0489">Methyltransferase</keyword>
    <keyword id="KW-1185">Reference proteome</keyword>
    <keyword id="KW-0698">rRNA processing</keyword>
    <keyword id="KW-0949">S-adenosyl-L-methionine</keyword>
    <keyword id="KW-0808">Transferase</keyword>
    <feature type="chain" id="PRO_1000194988" description="Ribosomal RNA large subunit methyltransferase E">
        <location>
            <begin position="1"/>
            <end position="217"/>
        </location>
    </feature>
    <feature type="active site" description="Proton acceptor" evidence="1">
        <location>
            <position position="173"/>
        </location>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <position position="64"/>
        </location>
        <ligand>
            <name>S-adenosyl-L-methionine</name>
            <dbReference type="ChEBI" id="CHEBI:59789"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <position position="66"/>
        </location>
        <ligand>
            <name>S-adenosyl-L-methionine</name>
            <dbReference type="ChEBI" id="CHEBI:59789"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <position position="92"/>
        </location>
        <ligand>
            <name>S-adenosyl-L-methionine</name>
            <dbReference type="ChEBI" id="CHEBI:59789"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <position position="108"/>
        </location>
        <ligand>
            <name>S-adenosyl-L-methionine</name>
            <dbReference type="ChEBI" id="CHEBI:59789"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <position position="133"/>
        </location>
        <ligand>
            <name>S-adenosyl-L-methionine</name>
            <dbReference type="ChEBI" id="CHEBI:59789"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000255" key="1">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01547"/>
        </source>
    </evidence>
    <sequence length="217" mass="23525" checksum="280F66140984A83E" modified="2008-01-15" version="1">MKVNTKSKKVNKAWLNSHVNDPYVKAAQKDGYRARAAYKLKEIDEQLKLIRPGATVVDLGSTPGAWSQYVRRCLSPEGAAVGALNGRIISLDLLPMEPIEGVQFILGDFREEPVLAQLQEALGGGKADVVVSDMAPNLSGNGTTDAARIALLVELAVDFSIHHMKPEGALVVKLFHGGAYDDLVALFRQTFKVVKPIKPKSSRDKSSETFLVGMGLK</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="57" xmlns="http://uniprot.org/uniprot">
    <accession>A9BMW5</accession>
    <name>A9BMW5_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Diguanylate cyclase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Daci_5031</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="4" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX37660.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012206830.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_5031"/>
    <dbReference type="PRIDE" id="A9BMW5"/>
    <dbReference type="EnsemblBacteria" id="ABX37660">
        <property type="protein sequence ID" value="ABX37660"/>
        <property type="gene ID" value="Daci_5031"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_5031"/>
    <dbReference type="eggNOG" id="COG3706">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_029027_0_0_4"/>
    <dbReference type="OMA" id="MRPQDQL"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="CDD" id="cd01949">
        <property type="entry name" value="GGDEF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.70.270">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000160">
        <property type="entry name" value="GGDEF_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029787">
        <property type="entry name" value="Nucleotide_cyclase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043128">
        <property type="entry name" value="Rev_trsase/Diguanyl_cyclase"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00990">
        <property type="entry name" value="GGDEF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00267">
        <property type="entry name" value="GGDEF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55073">
        <property type="entry name" value="SSF55073"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00254">
        <property type="entry name" value="GGDEF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50887">
        <property type="entry name" value="GGDEF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="GGDEF" evidence="2">
        <location>
            <begin position="381"/>
            <end position="519"/>
        </location>
    </feature>
    <feature type="coiled-coil region" evidence="1">
        <location>
            <begin position="275"/>
            <end position="350"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS50887"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ABX37660.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="532" mass="57833" checksum="E65C3DAE582480C4" modified="2008-01-15" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="78" xmlns="http://uniprot.org/uniprot">
    <accession>A9BMY4</accession>
    <name>A9BMY4_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="6">Succinic semialdehyde dehydrogenase</fullName>
            <ecNumber evidence="6">1.2.1.16</ecNumber>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ordered locus">Daci_5050</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="7" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="4">Belongs to the aldehyde dehydrogenase family.</text>
    </comment>
    <dbReference type="EC" id="1.2.1.16" evidence="6"/>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX37679.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012206849.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_5050"/>
    <dbReference type="PRIDE" id="A9BMY4"/>
    <dbReference type="EnsemblBacteria" id="ABX37679">
        <property type="protein sequence ID" value="ABX37679"/>
        <property type="gene ID" value="Daci_5050"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_5050"/>
    <dbReference type="eggNOG" id="COG1012">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_005391_0_0_4"/>
    <dbReference type="OMA" id="WHRLILE"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009013">
        <property type="term" value="F:succinate-semialdehyde dehydrogenase [NAD(P)+] activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009450">
        <property type="term" value="P:gamma-aminobutyric acid catabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.309.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.605.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016161">
        <property type="entry name" value="Ald_DH/histidinol_DH"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016163">
        <property type="entry name" value="Ald_DH_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016160">
        <property type="entry name" value="Ald_DH_CS_CYS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029510">
        <property type="entry name" value="Ald_DH_CS_GLU"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016162">
        <property type="entry name" value="Ald_DH_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015590">
        <property type="entry name" value="Aldehyde_DH_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010102">
        <property type="entry name" value="Succ_semiAld_DH"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00171">
        <property type="entry name" value="Aldedh"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53720">
        <property type="entry name" value="SSF53720"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01780">
        <property type="entry name" value="SSADH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00070">
        <property type="entry name" value="ALDEHYDE_DEHYDR_CYS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00687">
        <property type="entry name" value="ALDEHYDE_DEHYDR_GLU"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="1 4 6" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Aldedh" evidence="5">
        <location>
            <begin position="26"/>
            <end position="479"/>
        </location>
    </feature>
    <feature type="active site" evidence="2">
        <location>
            <position position="257"/>
        </location>
    </feature>
    <feature type="active site" evidence="3">
        <location>
            <position position="291"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023002"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU10007"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU10008"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="RuleBase" id="RU003345"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="Pfam" id="PF00171"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="ABX37679.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="485" mass="52175" checksum="4282BDED9DDE4824" modified="2008-01-15" version="1">MSLSLQRPDLFRQACLLAEGWRAVGSGPAIDVFNPATGDRLGQVPALQAGETEAAIAAAQRALPAWAALTGKQRAGILRRWFDLMLAHQDDLARLMTLEQGKPLADARGEIAYAASFIEWFAEEGKRVDGELLQSPTAGQQLLTLREPIGVCAAITPWNFPAAMITRKAGPALAAGCTMLVKPAESTPFTALALGVLAEEAGIPAGVFQVLTGHPQDIGQALTQSPVVRKLSFTGSTATGRLLMRQCSDTVKKLSLELGGNAPLIVFDDADIDQAVAGILASKFRNAGQTCVCANRIYVHDRIHDELARRLARAMAEFKVGNGLEPGVTHGPLINEAAVQKVESHVADALSKGARLLAGGRRPVPGKLFFEPTLLADVNDSMRVCEEETFGPLAPLFRFHDEDEVVRRANDTIYGLAAYLFTNDNRRIWRVSRALEYGMVGINTGLISNEVAPFGGVKQSGLGREGSRHGIEEYLETKYLCLQTA</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="79" xmlns="http://uniprot.org/uniprot">
    <accession>A9BN08</accession>
    <name>A9BN08_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">Histidine kinase</fullName>
            <ecNumber evidence="2">2.7.13.3</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="6" type="ordered locus">Daci_5074</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="7" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>ATP + protein L-histidine = ADP + protein N-phospho-L-histidine.</text>
            <dbReference type="EC" id="2.7.13.3"/>
        </reaction>
    </comment>
    <dbReference type="EC" id="2.7.13.3" evidence="2"/>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX37703.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012206873.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_5074"/>
    <dbReference type="PRIDE" id="A9BN08"/>
    <dbReference type="EnsemblBacteria" id="ABX37703">
        <property type="protein sequence ID" value="ABX37703"/>
        <property type="gene ID" value="Daci_5074"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_5074"/>
    <dbReference type="eggNOG" id="COG0642">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_634467_0_0_4"/>
    <dbReference type="OMA" id="WRQGYRI"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000155">
        <property type="term" value="F:phosphorelay sensor kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.565.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003594">
        <property type="entry name" value="HATPase_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036890">
        <property type="entry name" value="HATPase_C_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005467">
        <property type="entry name" value="His_kinase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003661">
        <property type="entry name" value="HisK_dim/P"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036097">
        <property type="entry name" value="HisK_dim/P_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025751">
        <property type="entry name" value="RsbRD_N_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004358">
        <property type="entry name" value="Sig_transdc_His_kin-like_C"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02518">
        <property type="entry name" value="HATPase_c"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF14361">
        <property type="entry name" value="RsbRD_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00344">
        <property type="entry name" value="BCTRLSENSOR"/>
    </dbReference>
    <dbReference type="SMART" id="SM00387">
        <property type="entry name" value="HATPase_c"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00388">
        <property type="entry name" value="HisKA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47384">
        <property type="entry name" value="SSF47384"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55874">
        <property type="entry name" value="SSF55874"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50109">
        <property type="entry name" value="HIS_KIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="6" id="KW-0418">Kinase</keyword>
    <keyword evidence="3" id="KW-0597">Phosphoprotein</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="6" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Histidine kinase" evidence="5">
        <location>
            <begin position="185"/>
            <end position="429"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="4">
        <location>
            <begin position="358"/>
            <end position="383"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00000085"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00012438"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022553"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="PROSITE" id="PS50109"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="ABX37703.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="432" mass="46733" checksum="3556B3DD0A602DF0" modified="2008-01-15" version="1">MTSQGNELCILADALAAQREGLLQTWRKAVRRDPALTAGEALPRTQLNDHIPAVLAAFEQQLRALGGAPAGAAEPPVDGEQAAAHGLHRWQQGYDLHEVVRELGLLNEVMVAQLEAYAEEHPDAHGAMRVARKAWAATYTRDVQDSSTQYFRLQQQEAEGHVRDLEAALHDVSMLDLQRSQLWEQVAHDLRSNVGVVANVTHGLGMQHAPAQSREKLLRMLDRNVQSLRHLLDDVTELAKLHAGREHRQLTSFDAAEVITHLCEGLQALANDRGLYLHLQGPGTMPVEGDALKLRRIAQNLILNALKYTQEGGVTVKWALGDGEDRRRWMLSIGDTGPGMAPAAPLVAALKQATDMDPSGHLGTAASGEVRTGGAPQQGGAAASYRSGAGEGIGLSIVKRLAELLDATIEVQSAAQTGTTFLLLFPLRYADE</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="88" xmlns="http://uniprot.org/uniprot">
    <accession>A9BN27</accession>
    <name>A9BN27_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Transcriptional regulator, AraC family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_5093</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX37722.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012206892.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_5093"/>
    <dbReference type="PRIDE" id="A9BN27"/>
    <dbReference type="EnsemblBacteria" id="ABX37722">
        <property type="protein sequence ID" value="ABX37722"/>
        <property type="gene ID" value="Daci_5093"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_5093"/>
    <dbReference type="eggNOG" id="COG2207">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_049704_4_1_4"/>
    <dbReference type="OMA" id="GELAFRW"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003700">
        <property type="term" value="F:DNA-binding transcription factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043565">
        <property type="term" value="F:sequence-specific DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035418">
        <property type="entry name" value="AraC-bd_2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009057">
        <property type="entry name" value="Homeobox-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018060">
        <property type="entry name" value="HTH_AraC"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020449">
        <property type="entry name" value="Tscrpt_reg_HTH_AraC-type"/>
    </dbReference>
    <dbReference type="Pfam" id="PF14525">
        <property type="entry name" value="AraC_binding_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12833">
        <property type="entry name" value="HTH_18"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00032">
        <property type="entry name" value="HTHARAC"/>
    </dbReference>
    <dbReference type="SMART" id="SM00342">
        <property type="entry name" value="HTH_ARAC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46689">
        <property type="entry name" value="SSF46689"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01124">
        <property type="entry name" value="HTH_ARAC_FAMILY_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HTH araC/xylS-type" evidence="1">
        <location>
            <begin position="213"/>
            <end position="314"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS01124"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX37722.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="319" mass="35000" checksum="1D1A3BACACFEFCF3" modified="2008-01-15" version="1">MTDAMVLSTDGLPPGETASAWHAWMSSLFAGLDTDVYGDRLFEGHVRVANAGDVVLTRLEAGRHRVMRSMQGLRAHESPYLKIVAPWEGVASVRQHNREASVRKGSWVIYDTAQEYEVTNPEWSEHLIVMLPRQAIVDRGIRLEGLMGRNVGGSSGIARIALETMRSTYQELPGMAPHLARRAGELLVDMVHLSLQELAGQGTAGTQQLALQDRIRAHVAAHLRDPGLSVESVAAALNCSKRHLHNAFADSQTSLGAFIQHSRLELCMRELLQPAQAQRTITEVAMDCGFGSTAHFSRAFKIYTGLSPSDFRAMRKPAG</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-01-19" version="52" xmlns="http://uniprot.org/uniprot">
    <accession>A9BN30</accession>
    <name>A9BN30_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="3">17 kDa surface antigen</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Daci_5096</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="4" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX37725.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012206895.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_5096"/>
    <dbReference type="EnsemblBacteria" id="ABX37725">
        <property type="protein sequence ID" value="ABX37725"/>
        <property type="gene ID" value="Daci_5096"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_5096"/>
    <dbReference type="eggNOG" id="COG3133">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_090265_0_0_4"/>
    <dbReference type="OMA" id="GVRYGWV"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0019867">
        <property type="term" value="C:outer membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008816">
        <property type="entry name" value="Gly_zipper_2TM_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF05433">
        <property type="entry name" value="Rick_17kDa_Anti"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="1">
        <location>
            <begin position="1"/>
            <end position="24"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5002735629" evidence="1">
        <location>
            <begin position="25"/>
            <end position="190"/>
        </location>
    </feature>
    <feature type="domain" description="Rick_17kDa_Anti" evidence="2">
        <location>
            <begin position="101"/>
            <end position="141"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF05433"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ABX37725.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="190" mass="18839" checksum="E6F8BC197ABE86A4" modified="2008-01-15" version="1">MPSIHRLSAMGAGCIAALMLSACAGYPQQGGYPGGGYPAGGYPAGGYPTSGYPSGGYPGGGQPGTAYPGGGGYVQQGRVTNVQLVQIQQPSGIGGSGIGAGAVVGGVVGGVLGRQVGKGSGRDIATIAGVVGGAMAGNAIEKNTGPGDLRDVYRVTVQLNDGSTRVFDYQNNPQLRIGESVRVDNNQLIR</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="82" xmlns="http://uniprot.org/uniprot">
    <accession>A9BN88</accession>
    <name>A9BN88_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="8">ABC transporter related</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="8" type="ordered locus">Daci_5154</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="9" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX37783.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012206953.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_5154"/>
    <dbReference type="PRIDE" id="A9BN88"/>
    <dbReference type="EnsemblBacteria" id="ABX37783">
        <property type="protein sequence ID" value="ABX37783"/>
        <property type="gene ID" value="Daci_5154"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_5154"/>
    <dbReference type="eggNOG" id="COG1136">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_000604_1_22_4"/>
    <dbReference type="OMA" id="MGRFPHV"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0042953">
        <property type="term" value="P:lipoprotein transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd03255">
        <property type="entry name" value="ABC_MJ0796_LolCDE_FtsE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003593">
        <property type="entry name" value="AAA+_ATPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003439">
        <property type="entry name" value="ABC_transporter-like_ATP-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017871">
        <property type="entry name" value="ABC_transporter-like_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015854">
        <property type="entry name" value="ABC_transpr_LolD"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017911">
        <property type="entry name" value="MacB_ATP-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR24220:SF654">
        <property type="entry name" value="PTHR24220:SF654"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00005">
        <property type="entry name" value="ABC_tran"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00382">
        <property type="entry name" value="AAA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00211">
        <property type="entry name" value="ABC_TRANSPORTER_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50893">
        <property type="entry name" value="ABC_TRANSPORTER_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3 6" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="1" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="5" id="KW-0472">Membrane</keyword>
    <keyword evidence="2 6" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4" id="KW-1278">Translocase</keyword>
    <feature type="domain" description="ABC transporter" evidence="7">
        <location>
            <begin position="17"/>
            <end position="238"/>
        </location>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <begin position="54"/>
            <end position="61"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022967"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00434"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="PROSITE" id="PS50893"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="ABX37783.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="238" mass="26009" checksum="E519869E9C9304ED" modified="2008-01-15" version="1">MTAAPRDNTPLTQPPLLQVQGLARRYRNDGGTETAVFENVDCSVARGEFVAIVGDSGVGKSTFLNCLAGLDEWQQGRVLHEGQDLSALDETGRALWRRSHVGFVFQAFHVLPHLDVWHNVALPLMLLQRLNAAGRQRVQQLLQAVGLQGLEQRLPWQLSGGQLQRVAIARALVHGPALLLADEPTGNLDPGTAAQVMELLLQQTREHQAALVLVTHSIEAARRADRVLRLTAQGMQPA</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="83" xmlns="http://uniprot.org/uniprot">
    <accession>A9BNQ0</accession>
    <name>A9BNQ0_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="3 5">Argininosuccinate lyase</fullName>
            <shortName evidence="5">ASAL</shortName>
            <ecNumber evidence="3 5">4.3.2.1</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="5">Arginosuccinase</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="5" type="primary">argH</name>
        <name evidence="8" type="ordered locus">Daci_5316</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="9" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="1 5">
            <text>2-(N(omega)-L-arginino)succinate = fumarate + L-arginine</text>
            <dbReference type="Rhea" id="RHEA:24020"/>
            <dbReference type="ChEBI" id="CHEBI:29806"/>
            <dbReference type="ChEBI" id="CHEBI:32682"/>
            <dbReference type="ChEBI" id="CHEBI:57472"/>
            <dbReference type="EC" id="4.3.2.1"/>
        </reaction>
    </comment>
    <comment type="pathway">
        <text evidence="2 5">Amino-acid biosynthesis; L-arginine biosynthesis; L-arginine from L-ornithine and carbamoyl phosphate: step 3/3.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="5">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="5">Belongs to the lyase 1 family. Argininosuccinate lyase subfamily.</text>
    </comment>
    <dbReference type="EC" id="4.3.2.1" evidence="3 5"/>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX37945.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012207114.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_5316"/>
    <dbReference type="PRIDE" id="A9BNQ0"/>
    <dbReference type="EnsemblBacteria" id="ABX37945">
        <property type="protein sequence ID" value="ABX37945"/>
        <property type="gene ID" value="Daci_5316"/>
    </dbReference>
    <dbReference type="GeneID" id="60689661"/>
    <dbReference type="KEGG" id="dac:Daci_5316"/>
    <dbReference type="eggNOG" id="COG0165">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_027272_2_3_4"/>
    <dbReference type="OMA" id="KKNPDVF"/>
    <dbReference type="UniPathway" id="UPA00068">
        <property type="reaction ID" value="UER00114"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004056">
        <property type="term" value="F:argininosuccinate lyase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0042450">
        <property type="term" value="P:arginine biosynthetic process via ornithine"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd01359">
        <property type="entry name" value="Argininosuccinate_lyase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.275.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00006">
        <property type="entry name" value="Arg_succ_lyase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029419">
        <property type="entry name" value="Arg_succ_lyase_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009049">
        <property type="entry name" value="Argininosuccinate_lyase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR024083">
        <property type="entry name" value="Fumarase/histidase_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020557">
        <property type="entry name" value="Fumarate_lyase_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000362">
        <property type="entry name" value="Fumarate_lyase_fam"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR022761">
        <property type="entry name" value="Fumarate_lyase_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008948">
        <property type="entry name" value="L-Aspartase-like"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43814">
        <property type="entry name" value="PTHR43814"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF14698">
        <property type="entry name" value="ASL_C2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00206">
        <property type="entry name" value="Lyase_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00149">
        <property type="entry name" value="FUMRATELYASE"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48557">
        <property type="entry name" value="SSF48557"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00838">
        <property type="entry name" value="argH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00163">
        <property type="entry name" value="FUMARATE_LYASES"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-0028">Amino-acid biosynthesis</keyword>
    <keyword evidence="4 5" id="KW-0055">Arginine biosynthesis</keyword>
    <keyword evidence="5" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="5 8" id="KW-0456">Lyase</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Lyase_1" evidence="6">
        <location>
            <begin position="25"/>
            <end position="317"/>
        </location>
    </feature>
    <feature type="domain" description="ASL_C2" evidence="7">
        <location>
            <begin position="392"/>
            <end position="459"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00000985"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00004941"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00012338"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022571"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00006"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="Pfam" id="PF00206"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="Pfam" id="PF14698"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="ABX37945.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="493" mass="53939" checksum="02C9621C24EEFC82" modified="2008-01-15" version="1">MSANQPTSASHNQLDTKAQAWSALFEEPMSDLVKRYTSSVFFDKRLWQADITGSLAHAEMLAAQGIIAAADHESIRKGMAQITQEIESGQFEWKLDLEDVHLNIEARLTQLVGDAGKRLHTGRSRNDQVATDVRLWLRGEIDLIEGLLGELQLSLVEVAEKNVDVILPGFTHLQVAQPVSFAHHLLAYVEMFKRDAERMLDLRRRVNVLPLGSAALAGTTYPLDRERVARTLGMEGVCQNSLDGVSDRDFAIEFTSAASLCMVHVSRLSEELIIWMSQNFGFIRIADRFTTGSSIMPQKKNPDVPELARGKTGRVVGHLMGLITLMKGQPLAYNKDNQEDKEPLFDTVDTLKDTLRIFAEMIGGQADPATGGKKGGITVNAEAMRAAALKGYATATDLADYLVKKGLPFRDAHETVAHAVKLASQKGVDLTELPLAELQAFNPGIEADVFEALSLEGSLNARNTLGGTAPAQVRKQLAGHQARLNARLNARLG</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="61" xmlns="http://uniprot.org/uniprot">
    <accession>A9BNX3</accession>
    <name>A9BNX3_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Daci_5389</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="4" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX38018.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012207187.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_5389"/>
    <dbReference type="PRIDE" id="A9BNX3"/>
    <dbReference type="EnsemblBacteria" id="ABX38018">
        <property type="protein sequence ID" value="ABX38018"/>
        <property type="gene ID" value="Daci_5389"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_5389"/>
    <dbReference type="eggNOG" id="COG0697">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_033863_4_4_4"/>
    <dbReference type="OMA" id="WSINAVV"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000620">
        <property type="entry name" value="EamA_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00892">
        <property type="entry name" value="EamA"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="40"/>
            <end position="60"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="72"/>
            <end position="91"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="97"/>
            <end position="118"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="127"/>
            <end position="144"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="159"/>
            <end position="176"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="188"/>
            <end position="209"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="221"/>
            <end position="242"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="254"/>
            <end position="274"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="280"/>
            <end position="297"/>
        </location>
    </feature>
    <feature type="domain" description="EamA" evidence="2">
        <location>
            <begin position="14"/>
            <end position="141"/>
        </location>
    </feature>
    <feature type="domain" description="EamA" evidence="2">
        <location>
            <begin position="156"/>
            <end position="297"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF00892"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ABX38018.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="300" mass="32511" checksum="E37B1D908A45B8D6" modified="2008-01-15" version="1">MSQPLKPSTAAILTLPPLLWAGNAIVGRMVHDLISPFALNFLRWAIAFMLLLPLAGWVLRRDSAVWPQWRQFALLGLLGIGCYNALLYLALKTSTPLNATLVGSSMPVWMLAVGRICWGIAVSRRQLLGAALSVLGVAVVLSRGDPQVLRQLQLVPGDLFMVLATILWAFYTWLLSRTSVSGQLRADWSGFLLAQMVFGLMWSGLFTGLEAASGRFHLQAGWPLLGALLFIAVGPAILAYRFWGLGVQRSSPAVAGFFGNLMPLFTALLSIPLLGQTPQLYHGLAFALIVGGIMVSSRRA</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="57" xmlns="http://uniprot.org/uniprot">
    <accession>A9BP49</accession>
    <name>A9BP49_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Extracellular solute-binding protein family 1</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_5465</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX38094.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012207263.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_5465"/>
    <dbReference type="PRIDE" id="A9BP49"/>
    <dbReference type="EnsemblBacteria" id="ABX38094">
        <property type="protein sequence ID" value="ABX38094"/>
        <property type="gene ID" value="Daci_5465"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_5465"/>
    <dbReference type="eggNOG" id="COG1653">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_031285_3_0_4"/>
    <dbReference type="OMA" id="ESFSAWH"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006059">
        <property type="entry name" value="SBP"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13416">
        <property type="entry name" value="SBP_bac_8"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="1">
        <location>
            <begin position="1"/>
            <end position="21"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5002735651" evidence="1">
        <location>
            <begin position="22"/>
            <end position="434"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX38094.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="434" mass="47457" checksum="581639B881A7600C" modified="2008-01-15" version="1">MQLKQLAMAAAIAATTISAQAQTEIQWWHSMSAALGDWVNDLAKEYNASQTQYKIVPTYKGQYDESMTAAIAAFRAGNAPDILQVFEVGTATMMASKGAVVPVTKVMNDGGFKFDQGEYISAVAGYYTAPNGQMMSYPLNSSTTIFYYNKDAFKKAGLDENKPPKTWPEVFAAAEKLKASGHRCALTTSWMSWTQLESFSLWHNTLYATKNNGFDGTDAKLVFNSPLHVKHFENLAKAAKDGSFVYKGRGNVPDAAFASGECAMITGSSGLYARVVKEGKFAFGQSQLPYYADVKGAPQNTAIGGASLWVMAGKSAERYKGVADFFNFLNNTKIQAASHQRTGYLPVTTAAYKLTEASGFYEKHPGTDTAVTQMIRKTTDKSRGIRLGNFVQIRTIIDEETEQIWTGKKTPQQALDTAVTRGNEQLGRFARANK</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="59" xmlns="http://uniprot.org/uniprot">
    <accession>A9BPB8</accession>
    <name>A9BPB8_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Heavy metal transport/detoxification protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_0035</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX32682.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012201975.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_0035"/>
    <dbReference type="PRIDE" id="A9BPB8"/>
    <dbReference type="EnsemblBacteria" id="ABX32682">
        <property type="protein sequence ID" value="ABX32682"/>
        <property type="gene ID" value="Daci_0035"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_0035"/>
    <dbReference type="eggNOG" id="COG2608">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_134973_5_0_4"/>
    <dbReference type="OMA" id="DQDARVE"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd00371">
        <property type="entry name" value="HMA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006121">
        <property type="entry name" value="HMA_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036163">
        <property type="entry name" value="HMA_dom_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00403">
        <property type="entry name" value="HMA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55008">
        <property type="entry name" value="SSF55008"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50846">
        <property type="entry name" value="HMA_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HMA" evidence="1">
        <location>
            <begin position="2"/>
            <end position="64"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS50846"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX32682.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="64" mass="6819" checksum="3A1BCC598A7B3604" modified="2008-01-15" version="1">MQHVFTVQGMTCGHCERAVTQAVQGVDDQAQVKIDRAAQRVEVDSSASREALGAAIAEEGYKVA</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="61" xmlns="http://uniprot.org/uniprot">
    <accession>A9BPG8</accession>
    <name>A9BPG8_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="1">L-carnitine dehydratase/bile acid-inducible protein F</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Daci_0189</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="2" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX32835.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012202128.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_0189"/>
    <dbReference type="PRIDE" id="A9BPG8"/>
    <dbReference type="EnsemblBacteria" id="ABX32835">
        <property type="protein sequence ID" value="ABX32835"/>
        <property type="gene ID" value="Daci_0189"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_0189"/>
    <dbReference type="eggNOG" id="COG1804">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_033975_2_1_4"/>
    <dbReference type="OMA" id="CCALQST"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003824">
        <property type="term" value="F:catalytic activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.1540.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.10540">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003673">
        <property type="entry name" value="CoA-Trfase_fam_III"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR044855">
        <property type="entry name" value="CoA-Trfase_III_dom3_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023606">
        <property type="entry name" value="CoA-Trfase_III_dom_1_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02515">
        <property type="entry name" value="CoA_transf_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF89796">
        <property type="entry name" value="SSF89796"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ABX32835.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="402" mass="42663" checksum="3B96D94F56BFD522" modified="2008-01-15" version="1">MQTAPPAPLAHYRVLDLSQGVAGPYCTHLLSRQGAEVIKVDPPEGDWARHVGISRNGHSSLSATYNAGKRSIAVDARQAQGRALLLRLAREADIVVQNFRPQVVQRMGVDYDSLRAAGLDPVYVSISGYGPTGPYADRPATDSVMQADTGLMTSNRDAQGQPQRVGLLLADIAAGVYAAQACTAALLGKARSGRGRHVELNLFEVCCALQSTVLAEDTLRGGLPAEGVSAPNGVFATADGFITVLALNNDQFERLCRALDLPHWLQDERFASNAGRMAHRHVLHAGLQALLAQQPRAHWEQRLAAQGALHAGVRTLADVVAHPQAVHRASFATLAQPGFGPLLYAASPWPADAAACGASLGAAPRTGEHTRQILAEAGCTPQEMEQWMASGVVHQCAQEVMA</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="52" xmlns="http://uniprot.org/uniprot">
    <accession>A9BPL9</accession>
    <name>A9BPL9_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Alkylphosphonate utilization operon protein PhnA</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ordered locus">Daci_0240</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="5" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the YjdM family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX32886.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_0240"/>
    <dbReference type="PRIDE" id="A9BPL9"/>
    <dbReference type="EnsemblBacteria" id="ABX32886">
        <property type="protein sequence ID" value="ABX32886"/>
        <property type="gene ID" value="Daci_0240"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_0240"/>
    <dbReference type="eggNOG" id="COG2824">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_134486_0_1_4"/>
    <dbReference type="OMA" id="SCLYEWN"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004624">
        <property type="entry name" value="YjdM"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013988">
        <property type="entry name" value="YjdM_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013987">
        <property type="entry name" value="YjdM_N"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30305:SF3">
        <property type="entry name" value="PTHR30305:SF3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03831">
        <property type="entry name" value="YjdM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08274">
        <property type="entry name" value="YjdM_Zn_Ribbon"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00686">
        <property type="entry name" value="phnA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="YjdM_Zn_Ribbon" evidence="3">
        <location>
            <begin position="23"/>
            <end position="52"/>
        </location>
    </feature>
    <feature type="domain" description="YjdM" evidence="2">
        <location>
            <begin position="69"/>
            <end position="137"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00009248"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF03831"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF08274"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="ABX32886.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="137" mass="14507" checksum="C412797900DE1982" modified="2008-01-15" version="1">MPGTARPPRPFVFTESVHPMPQTTPACPQCGLENTYPDATSYICPDCAFEWPMQAEEEAGEAAAGDGIVRDANGNALADGDAVILVKDLKVKGSSTVLKKGSKIKGIRLVDGADGHNVDCKTELGSMLLKSEFLKKA</sequence>
</entry>
<entry dataset="Swiss-Prot" created="2009-04-14" modified="2022-08-03" version="73" xmlns="http://uniprot.org/uniprot">
    <accession>A9BPS6</accession>
    <name>RL29_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">50S ribosomal protein L29</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="1" type="primary">rpmC</name>
        <name type="ordered locus">Daci_0399</name>
    </gene>
    <organism>
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference key="1">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain>DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the universal ribosomal protein uL29 family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX33045.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012202337.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A9BPS6"/>
    <dbReference type="SMR" id="A9BPS6"/>
    <dbReference type="STRING" id="398578.Daci_0399"/>
    <dbReference type="PRIDE" id="A9BPS6"/>
    <dbReference type="EnsemblBacteria" id="ABX33045">
        <property type="protein sequence ID" value="ABX33045"/>
        <property type="gene ID" value="Daci_0399"/>
    </dbReference>
    <dbReference type="GeneID" id="60690806"/>
    <dbReference type="KEGG" id="dac:Daci_0399"/>
    <dbReference type="eggNOG" id="COG0255">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_158491_1_1_4"/>
    <dbReference type="OMA" id="RFQMATS"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005840">
        <property type="term" value="C:ribosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003735">
        <property type="term" value="F:structural constituent of ribosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006412">
        <property type="term" value="P:translation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.287.310">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00374">
        <property type="entry name" value="Ribosomal_L29"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001854">
        <property type="entry name" value="Ribosomal_L29/L35"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036049">
        <property type="entry name" value="Ribosomal_L29/L35_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018254">
        <property type="entry name" value="Ribosomal_L29_CS"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00831">
        <property type="entry name" value="Ribosomal_L29"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46561">
        <property type="entry name" value="SSF46561"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00012">
        <property type="entry name" value="L29"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00579">
        <property type="entry name" value="RIBOSOMAL_L29"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword id="KW-1185">Reference proteome</keyword>
    <keyword id="KW-0687">Ribonucleoprotein</keyword>
    <keyword id="KW-0689">Ribosomal protein</keyword>
    <feature type="chain" id="PRO_1000121759" description="50S ribosomal protein L29">
        <location>
            <begin position="1"/>
            <end position="65"/>
        </location>
    </feature>
    <evidence type="ECO:0000255" key="1">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00374"/>
        </source>
    </evidence>
    <sequence length="65" mass="7235" checksum="AA6F58E020054205" modified="2008-01-15" version="1">MTKAAELRQKDVAGLEAEVKSLQKAHFGLRMQKATQQLGNTNTLRTTRRDIARAKTILAEKQAAK</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="62" xmlns="http://uniprot.org/uniprot">
    <accession>A9BPY3</accession>
    <name>A9BPY3_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="13">Phospholipase A1</fullName>
            <ecNumber evidence="13">3.1.1.32</ecNumber>
            <ecNumber evidence="13">3.1.1.4</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="13">Phosphatidylcholine 1-acylhydrolase</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="15" type="ordered locus">Daci_0552</name>
    </gene>
    <organism evidence="15 16">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="15 16" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="16">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="16" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="16">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="13">Hydrolysis of phosphatidylcholine with phospholipase A2 (EC 3.1.1.4) and phospholipase A1 (EC 3.1.1.32) activities.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="2 13">
            <text>a 1,2-diacyl-sn-glycero-3-phosphocholine + H2O = a 1-acyl-sn-glycero-3-phosphocholine + a fatty acid + H(+)</text>
            <dbReference type="Rhea" id="RHEA:15801"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:28868"/>
            <dbReference type="ChEBI" id="CHEBI:57643"/>
            <dbReference type="ChEBI" id="CHEBI:58168"/>
            <dbReference type="EC" id="3.1.1.4"/>
        </reaction>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1 13">
            <text>a 1,2-diacyl-sn-glycero-3-phosphocholine + H2O = a 2-acyl-sn-glycero-3-phosphocholine + a fatty acid + H(+)</text>
            <dbReference type="Rhea" id="RHEA:18689"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:28868"/>
            <dbReference type="ChEBI" id="CHEBI:57643"/>
            <dbReference type="ChEBI" id="CHEBI:57875"/>
            <dbReference type="EC" id="3.1.1.32"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="13">
            <name>Ca(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29108"/>
        </cofactor>
        <text evidence="13">Binds 1 Ca(2+) ion per monomer. In the dimeric form the Ca(2+) is bound by different amino acids with binding of each Ca(2+) shared with ligands coming from each monomer. The Ca(2+) ion may have a role in catalysis.</text>
    </comment>
    <comment type="subunit">
        <text evidence="5 13">Homodimer; dimerization is reversible, and the dimeric form is the active one.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="13">Cell outer membrane</location>
            <topology evidence="13">Multi-pass membrane protein</topology>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="3">Membrane</location>
            <topology evidence="3">Multi-pass membrane protein</topology>
        </subcellularLocation>
        <text evidence="13">One of the very few enzymes located there.</text>
    </comment>
    <comment type="similarity">
        <text evidence="4 13">Belongs to the phospholipase A1 family.</text>
    </comment>
    <dbReference type="EC" id="3.1.1.32" evidence="13"/>
    <dbReference type="EC" id="3.1.1.4" evidence="13"/>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX33198.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012202484.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_0552"/>
    <dbReference type="PRIDE" id="A9BPY3"/>
    <dbReference type="EnsemblBacteria" id="ABX33198">
        <property type="protein sequence ID" value="ABX33198"/>
        <property type="gene ID" value="Daci_0552"/>
    </dbReference>
    <dbReference type="GeneID" id="60690895"/>
    <dbReference type="KEGG" id="dac:Daci_0552"/>
    <dbReference type="eggNOG" id="COG2829">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_045813_0_0_4"/>
    <dbReference type="OMA" id="GAEMNTR"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009279">
        <property type="term" value="C:cell outer membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0052740">
        <property type="term" value="F:1-acyl-2-lysophosphatidylserine acylhydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0052739">
        <property type="term" value="F:phosphatidylserine 1-acylhydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008970">
        <property type="term" value="F:phospholipase A1 activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004623">
        <property type="term" value="F:phospholipase A2 activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016042">
        <property type="term" value="P:lipid catabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.230.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003187">
        <property type="entry name" value="PLipase_A1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036541">
        <property type="entry name" value="PLipase_A1_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR40457">
        <property type="entry name" value="PTHR40457"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02253">
        <property type="entry name" value="PLA1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR01486">
        <property type="entry name" value="PHPHLIPASEA1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56931">
        <property type="entry name" value="SSF56931"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="13" id="KW-0106">Calcium</keyword>
    <keyword evidence="12 13" id="KW-0998">Cell outer membrane</keyword>
    <keyword evidence="10 13" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="13" id="KW-0442">Lipid degradation</keyword>
    <keyword evidence="13" id="KW-0443">Lipid metabolism</keyword>
    <keyword evidence="11" id="KW-0472">Membrane</keyword>
    <keyword evidence="8 13" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="16" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="9" id="KW-0732">Signal</keyword>
    <keyword evidence="7" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="6" id="KW-1134">Transmembrane beta strand</keyword>
    <feature type="region of interest" description="Disordered" evidence="14">
        <location>
            <begin position="76"/>
            <end position="126"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00000111"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00001604"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00010525"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00011702"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022452"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00022729"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="12">
        <source>
            <dbReference type="ARBA" id="ARBA00023237"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="13">
        <source>
            <dbReference type="RuleBase" id="RU366027"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="14">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="15">
        <source>
            <dbReference type="EMBL" id="ABX33198.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="16">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="406" mass="45218" checksum="F8761BDF41CE8EBB" modified="2008-01-15" version="1">MTTPTHLDRRKRPSRTPTPLQWALAMGLGATPWLGAQAQTAPRPLSEDAWRQCAATTDNQSRLACFDTWAQQQQPLTAPPATGWSAPAASAAADPGALPTPAPVVTADSGQGLALPTTPTNGGCRDPRYSELSRYFELEPGSDCGTFSFRGYRPMSVSVVTADHVNRQPTTPGKDPAQSQPYKTEEMRVQLSVRTKVAQGLLTSSTSAGKDSLWVGYTQQSYWQLFSPAISRPFRNTDHEPEIFYVYPTDARLPFGWRWRYSGVGLVHQSNGQSDPLSRSWNRWYLMTGFELDNRWQLHAKAWQRIRESAEHDDNPRIQDYIGRGEVKLGWNVNAQNYLGFTARGSLGQGRGSGRVEWLRTLGEGWNGGKSNLRLHVQLFSGYGDSLIDYNYKRTVLSVGFSLLDF</sequence>
</entry>
<entry dataset="Swiss-Prot" created="2009-03-24" modified="2022-08-03" version="83" xmlns="http://uniprot.org/uniprot">
    <accession>A9BPZ7</accession>
    <name>DCUP_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Uroporphyrinogen decarboxylase</fullName>
            <shortName evidence="1">UPD</shortName>
            <shortName evidence="1">URO-D</shortName>
            <ecNumber evidence="1">4.1.1.37</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="1" type="primary">hemE</name>
        <name type="ordered locus">Daci_0566</name>
    </gene>
    <organism>
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference key="1">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain>DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="1">Catalyzes the decarboxylation of four acetate groups of uroporphyrinogen-III to yield coproporphyrinogen-III.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>4 H(+) + uroporphyrinogen III = 4 CO2 + coproporphyrinogen III</text>
            <dbReference type="Rhea" id="RHEA:19865"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:16526"/>
            <dbReference type="ChEBI" id="CHEBI:57308"/>
            <dbReference type="ChEBI" id="CHEBI:57309"/>
            <dbReference type="EC" id="4.1.1.37"/>
        </reaction>
    </comment>
    <comment type="pathway">
        <text evidence="1">Porphyrin-containing compound metabolism; protoporphyrin-IX biosynthesis; coproporphyrinogen-III from 5-aminolevulinate: step 4/4.</text>
    </comment>
    <comment type="subunit">
        <text evidence="1">Homodimer.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="1">Belongs to the uroporphyrinogen decarboxylase family.</text>
    </comment>
    <dbReference type="EC" id="4.1.1.37" evidence="1"/>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX33212.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012202498.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A9BPZ7"/>
    <dbReference type="SMR" id="A9BPZ7"/>
    <dbReference type="STRING" id="398578.Daci_0566"/>
    <dbReference type="PRIDE" id="A9BPZ7"/>
    <dbReference type="EnsemblBacteria" id="ABX33212">
        <property type="protein sequence ID" value="ABX33212"/>
        <property type="gene ID" value="Daci_0566"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_0566"/>
    <dbReference type="eggNOG" id="COG0407">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_040933_0_0_4"/>
    <dbReference type="OMA" id="LWLMRQA"/>
    <dbReference type="UniPathway" id="UPA00251">
        <property type="reaction ID" value="UER00321"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004853">
        <property type="term" value="F:uroporphyrinogen decarboxylase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006782">
        <property type="term" value="P:protoporphyrinogen IX biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniPathway"/>
    </dbReference>
    <dbReference type="CDD" id="cd00717">
        <property type="entry name" value="URO-D"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.20.20.210">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00218">
        <property type="entry name" value="URO_D"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038071">
        <property type="entry name" value="UROD/MetE-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006361">
        <property type="entry name" value="Uroporphyrinogen_deCO2ase_HemE"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000257">
        <property type="entry name" value="Uroporphyrinogen_deCOase"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01208">
        <property type="entry name" value="URO-D"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51726">
        <property type="entry name" value="SSF51726"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01464">
        <property type="entry name" value="hemE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00906">
        <property type="entry name" value="UROD_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00907">
        <property type="entry name" value="UROD_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword id="KW-0963">Cytoplasm</keyword>
    <keyword id="KW-0210">Decarboxylase</keyword>
    <keyword id="KW-0456">Lyase</keyword>
    <keyword id="KW-0627">Porphyrin biosynthesis</keyword>
    <keyword id="KW-1185">Reference proteome</keyword>
    <feature type="chain" id="PRO_1000099988" description="Uroporphyrinogen decarboxylase">
        <location>
            <begin position="1"/>
            <end position="370"/>
        </location>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <begin position="29"/>
            <end position="33"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <position position="79"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <position position="155"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <position position="210"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <position position="342"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="site" description="Transition state stabilizer" evidence="1">
        <location>
            <position position="79"/>
        </location>
    </feature>
    <evidence type="ECO:0000255" key="1">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00218"/>
        </source>
    </evidence>
    <sequence length="370" mass="40170" checksum="3B18620F3F61278A" modified="2008-01-15" version="1">MSFAPLTNDTFLRACRRQATDYTPLWLMRQAGRYLPEYKATRARAGSFMGLATNVDYATEVTLQPLERFPLDAAILFSDILTVPDAMGLGLSFAEGEGPRFAKVVRDEAAVAELAVPDMDKLRYVFDAVTSIRRALDGRVPLIGFSGSPWTLACYMVEGKGSDDYRLVKSLMYARPDLMHRILAINADSVAAYLNAQIDAGAQAVMVFDSWGGVLADGAFQEFSLAYTKRVLAGLNRTGADGQDVPRIVFTKGGGIWLPDMKDLDCEVLGLDWTANLARARAIVGGEVGGPGKALQGNIDPNVLFAPPERVAEQARAVLDSFGAPHTDRTTTGPTHIFNLGHGISQFTPPEHVAALVETVHSHSRALRQR</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="59" xmlns="http://uniprot.org/uniprot">
    <accession>A9BQD9</accession>
    <name>A9BQD9_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="4">HipA domain protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ordered locus">Daci_0903</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="5" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX33549.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012202835.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_0903"/>
    <dbReference type="PRIDE" id="A9BQD9"/>
    <dbReference type="EnsemblBacteria" id="ABX33549">
        <property type="protein sequence ID" value="ABX33549"/>
        <property type="gene ID" value="Daci_0903"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_0903"/>
    <dbReference type="eggNOG" id="COG2512">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="eggNOG" id="COG3550">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_050829_0_0_4"/>
    <dbReference type="OMA" id="MRPQGYL"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003700">
        <property type="term" value="F:DNA-binding transcription factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016740">
        <property type="term" value="F:transferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd00090">
        <property type="entry name" value="HTH_ARSR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011991">
        <property type="entry name" value="ArsR-like_HTH"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012893">
        <property type="entry name" value="HipA-like_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000835">
        <property type="entry name" value="HTH_MarR-typ"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036390">
        <property type="entry name" value="WH_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07804">
        <property type="entry name" value="HipA_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12802">
        <property type="entry name" value="MarR_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46785">
        <property type="entry name" value="SSF46785"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="HTH marR-type" evidence="3">
        <location>
            <begin position="8"/>
            <end position="56"/>
        </location>
    </feature>
    <feature type="domain" description="HipA_C" evidence="2">
        <location>
            <begin position="208"/>
            <end position="418"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF07804"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF12802"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="ABX33549.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="462" mass="50065" checksum="64B6FA837EA52F17" modified="2008-01-15" version="1">MATEDLSLQVLAALRRQGGALAARELQQMLGVSQPTVSRALAPLIQSGQVRKVGAARTQRYVLPRQVAGVGAEVAIMRVDTEGHASPFGRMIALHGGGFWVDEADGLSEQHDGLPWFLDDMRPQGFIGRSFAHSHPELQLGGDPRQWGEDDVLRALARFGEDLPGNLIVGEAAFERFHSLPARTLRAASAADYPRLAMQAMQGTHPGSSAGGEQPKFCCITAGRSVIVKFSPAGNAPAEQRIRDLLVCEHLALQTLAEDGLPAARTRLFLDGGRAFLESERFDRSQPAPGDVPSVVPGDVPVSQAHPGSNPGRIGMVSLQVLNAQYVGEVDNWAATANRLAARGLITEADARSLRLLEAYGQLIANTDRHYGNISFVLPQPHGDWALSPTYDMLPMLYMPINGEIVERDFGAQPQRPTAATLAEWPHAQALARRFWQTVAQDARISGDFRNIATRNLEFMSA</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="89" xmlns="http://uniprot.org/uniprot">
    <accession>A9BQK3</accession>
    <name>A9BQK3_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Transcriptional regulator, AraC family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ordered locus">Daci_0058</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="5" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX32705.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_0058"/>
    <dbReference type="PRIDE" id="A9BQK3"/>
    <dbReference type="EnsemblBacteria" id="ABX32705">
        <property type="protein sequence ID" value="ABX32705"/>
        <property type="gene ID" value="Daci_0058"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_0058"/>
    <dbReference type="eggNOG" id="COG1917">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="eggNOG" id="COG2207">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_000445_87_4_4"/>
    <dbReference type="OMA" id="DSGMHQH"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003700">
        <property type="term" value="F:DNA-binding transcription factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043565">
        <property type="term" value="F:sequence-specific DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.120.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003313">
        <property type="entry name" value="AraC-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018060">
        <property type="entry name" value="HTH_AraC"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014710">
        <property type="entry name" value="RmlC-like_jellyroll"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011051">
        <property type="entry name" value="RmlC_Cupin_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02311">
        <property type="entry name" value="AraC_binding"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12833">
        <property type="entry name" value="HTH_18"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00342">
        <property type="entry name" value="HTH_ARAC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51182">
        <property type="entry name" value="SSF51182"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01124">
        <property type="entry name" value="HTH_ARAC_FAMILY_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0804">Transcription</keyword>
    <keyword evidence="1" id="KW-0805">Transcription regulation</keyword>
    <feature type="domain" description="HTH araC/xylS-type" evidence="3">
        <location>
            <begin position="181"/>
            <end position="280"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023015"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023163"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="PROSITE" id="PS01124"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="ABX32705.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="309" mass="33446" checksum="E6BD60426066AC6C" modified="2008-01-15" version="1">MEPVEALHPHLFVPTPQRPVRAKQHRLSARTRVIPHSHSWAQIAISLDGVLHLSAPQGTLIAPPSKAVWIPPGLVHAVAMVEEADLVSIYVLQDDPAQGPVLPDLPSCGVACNPQDWARCRVLEVSPLMRELITALPKQSDDQPAPDAATLQREHHLSALLLEELRRASEVHLGVNMPQDKRLRMLCEAVVADPTQHESLADWAADTGASPRTVARLFQQQLGCSFTTWRQQVVLAHGLSLAARGLPIQQIAAELGYSPSAFSAMVHRTVGMPPARFFGQQAGSAAHRVGSGAVSRPTRELLGTIASSR</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="62" xmlns="http://uniprot.org/uniprot">
    <accession>A9BQK6</accession>
    <name>A9BQK6_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ordered locus">Daci_0061</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="5" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Periplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the UPF0065 (bug) family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX32708.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012202001.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_0061"/>
    <dbReference type="PRIDE" id="A9BQK6"/>
    <dbReference type="EnsemblBacteria" id="ABX32708">
        <property type="protein sequence ID" value="ABX32708"/>
        <property type="gene ID" value="Daci_0061"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_0061"/>
    <dbReference type="eggNOG" id="COG3181">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_045683_0_0_4"/>
    <dbReference type="OMA" id="AYVTNTM"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0042597">
        <property type="term" value="C:periplasmic space"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.190.150">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005064">
        <property type="entry name" value="BUG"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR042100">
        <property type="entry name" value="Bug_dom1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006311">
        <property type="entry name" value="TAT_signal"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR42928">
        <property type="entry name" value="PTHR42928"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03401">
        <property type="entry name" value="TctC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF017082">
        <property type="entry name" value="YflP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51318">
        <property type="entry name" value="TAT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="3">
        <location>
            <begin position="1"/>
            <end position="31"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5002735928" evidence="3">
        <location>
            <begin position="32"/>
            <end position="333"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004418"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00006987"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="ABX32708.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="333" mass="35583" checksum="0CC59378781CFA75" modified="2008-01-15" version="1">MTSTPFQASRRQILSAACATAIATLAPAARAQSQWPDKLIKLTVAFPPGGPTDTAARIVAQRLTERLGQTIVIDNRPGASGSVGTAAFIKSQPDGYSLSMFGMPALLAPMLFNNNLYDVRKDFLPVATVYDLPMAIVINPRELPDVTNLQQLIEHARKAKPALNYTSSGTGSFGHLSMEQLKDLGGFDMQHVPYRGSAPAVTDLIGGQIAVMFADVVAALPHIQAGKLRAIAVSSQKAKQLLPNVKSVAEQGFPGFDADTWGGLIAPLNTPPAVVQRLNQELKLILAEPELQKKMLAAGAIATYQDGAAMKARLNADFTRWSKIAKDKNISSQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-01-19" version="45" xmlns="http://uniprot.org/uniprot">
    <accession>A9BQQ7</accession>
    <name>A9BQQ7_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_0113</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX32759.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012202052.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_0113"/>
    <dbReference type="EnsemblBacteria" id="ABX32759">
        <property type="protein sequence ID" value="ABX32759"/>
        <property type="gene ID" value="Daci_0113"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_0113"/>
    <dbReference type="eggNOG" id="ENOG5032WN4">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_132086_0_0_4"/>
    <dbReference type="OMA" id="HDARIMA"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="41"/>
            <end position="62"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="68"/>
            <end position="87"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX32759.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="139" mass="15207" checksum="6A71931356A9EF3D" modified="2008-01-15" version="1">MSNFIYNSYCVEHPGVVHVYQAADDRKSAAKRFSGKRGASALLLAALVAALMVVVNEVAHNWTDGHMLGAWVVLWVAAFMGLALFSAPARRAAMTARAGYRAWTESRQQAAADERIWNAALQDARLMADLARAMDRQGN</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="66" xmlns="http://uniprot.org/uniprot">
    <accession>A9BQS3</accession>
    <name>A9BQS3_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="1">2,3-diketo-5-methylthio-1-phosphopentane phosphatase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Daci_0129</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="2" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX32775.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012202068.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_0129"/>
    <dbReference type="PRIDE" id="A9BQS3"/>
    <dbReference type="EnsemblBacteria" id="ABX32775">
        <property type="protein sequence ID" value="ABX32775"/>
        <property type="gene ID" value="Daci_0129"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_0129"/>
    <dbReference type="eggNOG" id="COG4359">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_058495_2_0_4"/>
    <dbReference type="OMA" id="VPFHEFD"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016791">
        <property type="term" value="F:phosphatase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.1000">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036412">
        <property type="entry name" value="HAD-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006384">
        <property type="entry name" value="HAD_hydro_PyrdxlP_Pase-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023214">
        <property type="entry name" value="HAD_sf"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56784">
        <property type="entry name" value="SSF56784"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01489">
        <property type="entry name" value="DKMTPPase-SF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ABX32775.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="234" mass="25759" checksum="F70DE4F41162CE81" modified="2008-01-15" version="1">MNKRIPLYLDTAAPGWMVQSDFDGTISLLDVTDTLLNRFGKPGWQELEDAWERGEIGSRECMKGQVALLDMDEAELRAHLDTIEIDPGFAGFVAAAQAHGMVVQVVSDGIDYAIRHVLERHGLGHLQVIANRLVQTGERSWRLDSPWASAQCARASGNCKCERLAEQQALHGRVLYVGDSTSDFCVSGRADFVLAKYKLIAHCESRGIAHAPFEHFEQATSLLDKVVLGLEALA</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="48" xmlns="http://uniprot.org/uniprot">
    <accession>A9BQT4</accession>
    <name>A9BQT4_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_0140</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX32786.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012202079.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_0140"/>
    <dbReference type="PRIDE" id="A9BQT4"/>
    <dbReference type="EnsemblBacteria" id="ABX32786">
        <property type="protein sequence ID" value="ABX32786"/>
        <property type="gene ID" value="Daci_0140"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_0140"/>
    <dbReference type="eggNOG" id="COG5266">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_079897_1_0_4"/>
    <dbReference type="OMA" id="FANESFN"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019613">
        <property type="entry name" value="DUF4198"/>
    </dbReference>
    <dbReference type="Pfam" id="PF10670">
        <property type="entry name" value="DUF4198"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="1">
        <location>
            <begin position="1"/>
            <end position="25"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5002734986" evidence="1">
        <location>
            <begin position="26"/>
            <end position="269"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX32786.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="269" mass="29166" checksum="1D25EF0DBB4D1FC6" modified="2008-01-15" version="1">MAKTPSKRLAWWLPLLSAVCISAQAHTPYLLPTSFEASPRAVISVDASFADKFFIPEVAFGETRFTVTAPDGSVTPMADVRQFKTRTVAEHQLPDEKGTYRVSTGPRLGAVFRSWERNGKVETARDPATPTPADARLLSHYQSLSVSETYITVGKPSRAALAPSGKGLEIVPVTHPADLFAGEKFDFTVQYDGKPLAAQKVEIFRSAMDLASQHSVDALTTDGEGRISYALPKSGIYLALVRYRADAPAGAAAPQYGNNYTLTFRVLAQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="71" xmlns="http://uniprot.org/uniprot">
    <accession>A9BQW9</accession>
    <name>A9BQW9_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="6">Cystathionine beta-lyase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ordered locus">Daci_0278</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="7" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>H2O + L,L-cystathionine = L-homocysteine + NH4(+) + pyruvate</text>
            <dbReference type="Rhea" id="RHEA:13965"/>
            <dbReference type="ChEBI" id="CHEBI:15361"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:28938"/>
            <dbReference type="ChEBI" id="CHEBI:58161"/>
            <dbReference type="ChEBI" id="CHEBI:58199"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="2 5">
            <name>pyridoxal 5'-phosphate</name>
            <dbReference type="ChEBI" id="CHEBI:597326"/>
        </cofactor>
    </comment>
    <comment type="similarity">
        <text evidence="3 5">Belongs to the trans-sulfuration enzymes family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX32924.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012202217.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_0278"/>
    <dbReference type="PRIDE" id="A9BQW9"/>
    <dbReference type="EnsemblBacteria" id="ABX32924">
        <property type="protein sequence ID" value="ABX32924"/>
        <property type="gene ID" value="Daci_0278"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_0278"/>
    <dbReference type="eggNOG" id="COG0626">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_018986_5_1_4"/>
    <dbReference type="OMA" id="LVYEMCD"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004121">
        <property type="term" value="F:cystathionine beta-lyase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030170">
        <property type="term" value="F:pyridoxal phosphate binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0019346">
        <property type="term" value="P:transsulfuration"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.640.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.1150.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000277">
        <property type="entry name" value="Cys/Met-Metab_PyrdxlP-dep_enz"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006233">
        <property type="entry name" value="Cys_b_lyase_bac"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015424">
        <property type="entry name" value="PyrdxlP-dep_Trfase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015421">
        <property type="entry name" value="PyrdxlP-dep_Trfase_major"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015422">
        <property type="entry name" value="PyrdxlP-dep_Trfase_small"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43500">
        <property type="entry name" value="PTHR43500"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01053">
        <property type="entry name" value="Cys_Met_Meta_PP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF001434">
        <property type="entry name" value="CGS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53383">
        <property type="entry name" value="SSF53383"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01324">
        <property type="entry name" value="cysta_beta_ly_B"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00868">
        <property type="entry name" value="CYS_MET_METAB_PP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="6" id="KW-0456">Lyase</keyword>
    <keyword evidence="4 5" id="KW-0663">Pyridoxal phosphate</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <feature type="modified residue" description="N6-(pyridoxal phosphate)lysine" evidence="4">
        <location>
            <position position="224"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001535"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00001933"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00009077"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="PIRSR" id="PIRSR001434-2"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="RuleBase" id="RU362118"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="ABX32924.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="405" mass="43239" checksum="5E773372F7917574" modified="2008-01-15" version="1">MAAEHAPLPGSSAPGAPALDLQTRLLHAGKRPAYAGGTAVNPPLVRASTVLFESTAQQREMRERRAGERIFSYGARGTPTGFALEDAVSELEGAHRTRLLPTGLAAIGMALLSYLRPGDHVLLTDSAYQPVRHLAGQWLRPYGIEYDFFAADGSDAQARMRPNTRMVYAECPGSLVYEMCDLPALAAMAHARGALVVADNTWGSGCQYRPLALGADVSVMAATKYLSGHSDVMMGTVATTEAAWEPLAARCDAFGMAVSPDDAWLVLRGMRSLAARLQMHEAHALEVAHWLQQHPAVATVFCPALPTHPGHALWLRDCQGTNGLVSLELQPGTAEAAVDRFIDGLRLFGIGASWGGYESLATAAHMAHARSVTDWSARGPVVRLHIGLESPRDLIADLEQGLAAL</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="54" xmlns="http://uniprot.org/uniprot">
    <accession>A9BQY6</accession>
    <name>A9BQY6_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ordered locus">Daci_0295</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="5" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Periplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the UPF0065 (bug) family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX32941.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012202234.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_0295"/>
    <dbReference type="PRIDE" id="A9BQY6"/>
    <dbReference type="EnsemblBacteria" id="ABX32941">
        <property type="protein sequence ID" value="ABX32941"/>
        <property type="gene ID" value="Daci_0295"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_0295"/>
    <dbReference type="eggNOG" id="COG3181">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_045683_0_0_4"/>
    <dbReference type="OMA" id="NEAIRAP"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0042597">
        <property type="term" value="C:periplasmic space"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.190.150">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005064">
        <property type="entry name" value="BUG"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR042100">
        <property type="entry name" value="Bug_dom1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR42928">
        <property type="entry name" value="PTHR42928"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03401">
        <property type="entry name" value="TctC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF017082">
        <property type="entry name" value="YflP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="3">
        <location>
            <begin position="1"/>
            <end position="27"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5002732429" evidence="3">
        <location>
            <begin position="28"/>
            <end position="325"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004418"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00006987"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="ABX32941.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="325" mass="33734" checksum="21A45124E86AEF47" modified="2008-01-15" version="1">MPSPLAAMARAAVALTAAVLCAAPALAQEWPKARPIRIVVPNPPAGPSDISLRPVAAAMQAALGQAVVVDNKPGANGNIGAAEVARSAPDGYTWLWAMDPVLTVNPHVYKNMGYKADALETLVVAARFSQTLVCSPGTGFKSVKDMVAASKTRELTYASGGAGSPGHLVMESLLATSGAKMVHVPYKGPAPAMQDLLGGQVDCGFLAGPTVFPQVQSGKLIALATSGKTRSALAPELPTIAESGFPEFDGTFWILLAAPKGVPPAVQKRFVDAMNEAIRAPEQKERAKALDIEMVGSTVAEAQARAKGQSAQWAALVKRIHLTND</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="75" xmlns="http://uniprot.org/uniprot">
    <accession>A9BR65</accession>
    <name>A9BR65_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Transcriptional regulator, MerR family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Daci_0477</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="4" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX33123.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012202409.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_0477"/>
    <dbReference type="PRIDE" id="A9BR65"/>
    <dbReference type="EnsemblBacteria" id="ABX33123">
        <property type="protein sequence ID" value="ABX33123"/>
        <property type="gene ID" value="Daci_0477"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_0477"/>
    <dbReference type="eggNOG" id="COG0789">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_060077_2_0_4"/>
    <dbReference type="OMA" id="HNRSAAR"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006355">
        <property type="term" value="P:regulation of transcription, DNA-templated"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009061">
        <property type="entry name" value="DNA-bd_dom_put_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000551">
        <property type="entry name" value="MerR-type_HTH_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13411">
        <property type="entry name" value="MerR_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00040">
        <property type="entry name" value="HTHMERR"/>
    </dbReference>
    <dbReference type="SMART" id="SM00422">
        <property type="entry name" value="HTH_MERR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46955">
        <property type="entry name" value="SSF46955"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50937">
        <property type="entry name" value="HTH_MERR_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HTH merR-type" evidence="2">
        <location>
            <begin position="5"/>
            <end position="74"/>
        </location>
    </feature>
    <feature type="coiled-coil region" evidence="1">
        <location>
            <begin position="84"/>
            <end position="111"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS50937"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ABX33123.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="173" mass="18829" checksum="A2A4070D37E41309" modified="2008-01-15" version="1">MPTHAFTIRKLADAAGVGVEAVRYYQRGGLLAAPDRVDGGFRQYSEDDVRRLRFIKRAQALGYSLEDIAELMSLSTKRDRLRVREITRERIAEIRERVADLQSMASALENLADCCAKAPEGSACSIIAALTGEQDLDPAIADPSLVAQASVAGRRRSVRPGAEAYHRTDGVAA</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="80" xmlns="http://uniprot.org/uniprot">
    <accession>A9BRG0</accession>
    <name>A9BRG0_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Regulator of RNA terminal phosphate cyclase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_0675</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX33321.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012202607.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_0675"/>
    <dbReference type="PRIDE" id="A9BRG0"/>
    <dbReference type="EnsemblBacteria" id="ABX33321">
        <property type="protein sequence ID" value="ABX33321"/>
        <property type="gene ID" value="Daci_0675"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_0675"/>
    <dbReference type="eggNOG" id="COG4650">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_039506_0_0_4"/>
    <dbReference type="OMA" id="CWFLLTE"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003700">
        <property type="term" value="F:DNA-binding transcription factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003593">
        <property type="entry name" value="AAA+_ATPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009715">
        <property type="entry name" value="RtcR"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017183">
        <property type="entry name" value="Sigma54_dep_tscrpt_act_RtcR"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002078">
        <property type="entry name" value="Sigma_54_int"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR32071:SF14">
        <property type="entry name" value="PTHR32071:SF14"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF06956">
        <property type="entry name" value="RtcR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00158">
        <property type="entry name" value="Sigma54_activat"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF037354">
        <property type="entry name" value="Txn_actvtr_RtcR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00382">
        <property type="entry name" value="AAA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50045">
        <property type="entry name" value="SIGMA54_INTERACT_4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Sigma-54 factor interaction" evidence="1">
        <location>
            <begin position="185"/>
            <end position="423"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS50045"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX33321.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="535" mass="60001" checksum="4F7584D49E9DBC45" modified="2008-01-15" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="77" xmlns="http://uniprot.org/uniprot">
    <accession>A9BRV0</accession>
    <name>A9BRV0_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Transcriptional regulator, GntR family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ordered locus">Daci_1021</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="6" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX33667.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012202953.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_1021"/>
    <dbReference type="PRIDE" id="A9BRV0"/>
    <dbReference type="EnsemblBacteria" id="ABX33667">
        <property type="protein sequence ID" value="ABX33667"/>
        <property type="gene ID" value="Daci_1021"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_1021"/>
    <dbReference type="eggNOG" id="COG1802">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_017584_5_2_4"/>
    <dbReference type="OMA" id="IRWIDME"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003700">
        <property type="term" value="F:DNA-binding transcription factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.120.530">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011711">
        <property type="entry name" value="GntR_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008920">
        <property type="entry name" value="TF_FadR/GntR_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000524">
        <property type="entry name" value="Tscrpt_reg_HTH_GntR"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036390">
        <property type="entry name" value="WH_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07729">
        <property type="entry name" value="FCD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00392">
        <property type="entry name" value="GntR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00035">
        <property type="entry name" value="HTHGNTR"/>
    </dbReference>
    <dbReference type="SMART" id="SM00895">
        <property type="entry name" value="FCD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00345">
        <property type="entry name" value="HTH_GNTR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46785">
        <property type="entry name" value="SSF46785"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48008">
        <property type="entry name" value="SSF48008"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50949">
        <property type="entry name" value="HTH_GNTR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0804">Transcription</keyword>
    <keyword evidence="1" id="KW-0805">Transcription regulation</keyword>
    <feature type="domain" description="HTH gntR-type" evidence="4">
        <location>
            <begin position="8"/>
            <end position="74"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023015"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023163"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="PROSITE" id="PS50949"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="ABX33667.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="231" mass="26468" checksum="31D418E4A8C3E2BC" modified="2008-01-15" version="1">MKISNIRHERGSSVYSTLRDMAISYEFKPGERLSESELALRLGVSRTPVREALTRLVADGFLLPASRGYMRRELDVKESLDLYEARVAVERECVRLAVERATDAQLDEALAYLEQSQRVASDTPIRQLVDLDEGFHLRIADMADNAELRRMLASLNERIRFIRWIDMESVGRASTQHEHLEILQALRARDAQASERLMAEHIGLRREQIVEAIARGLTRIYLPQEQVQATP</sequence>
</entry>
<entry dataset="Swiss-Prot" created="2009-03-24" modified="2022-08-03" version="80" xmlns="http://uniprot.org/uniprot">
    <accession>A9BRV2</accession>
    <name>GLPK_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Glycerol kinase</fullName>
            <ecNumber evidence="1">2.7.1.30</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="1">ATP:glycerol 3-phosphotransferase</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="1">Glycerokinase</fullName>
            <shortName evidence="1">GK</shortName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="1" type="primary">glpK</name>
        <name type="ordered locus">Daci_1023</name>
    </gene>
    <organism>
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference key="1">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain>DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="1">Key enzyme in the regulation of glycerol uptake and metabolism. Catalyzes the phosphorylation of glycerol to yield sn-glycerol 3-phosphate.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>ATP + glycerol = ADP + H(+) + sn-glycerol 3-phosphate</text>
            <dbReference type="Rhea" id="RHEA:21644"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:17754"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:57597"/>
            <dbReference type="ChEBI" id="CHEBI:456216"/>
            <dbReference type="EC" id="2.7.1.30"/>
        </reaction>
    </comment>
    <comment type="activity regulation">
        <text evidence="1">Inhibited by fructose 1,6-bisphosphate (FBP).</text>
    </comment>
    <comment type="pathway">
        <text evidence="1">Polyol metabolism; glycerol degradation via glycerol kinase pathway; sn-glycerol 3-phosphate from glycerol: step 1/1.</text>
    </comment>
    <comment type="similarity">
        <text evidence="1">Belongs to the FGGY kinase family.</text>
    </comment>
    <dbReference type="EC" id="2.7.1.30" evidence="1"/>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX33669.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012202955.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A9BRV2"/>
    <dbReference type="SMR" id="A9BRV2"/>
    <dbReference type="STRING" id="398578.Daci_1023"/>
    <dbReference type="PRIDE" id="A9BRV2"/>
    <dbReference type="EnsemblBacteria" id="ABX33669">
        <property type="protein sequence ID" value="ABX33669"/>
        <property type="gene ID" value="Daci_1023"/>
    </dbReference>
    <dbReference type="GeneID" id="60685585"/>
    <dbReference type="KEGG" id="dac:Daci_1023"/>
    <dbReference type="eggNOG" id="COG0554">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_009281_2_3_4"/>
    <dbReference type="OMA" id="FMLMNIG"/>
    <dbReference type="UniPathway" id="UPA00618">
        <property type="reaction ID" value="UER00672"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004370">
        <property type="term" value="F:glycerol kinase activity"/>
        <property type="evidence" value="ECO:0000250"/>
        <property type="project" value="UniProtKB"/>
    </dbReference>
    <dbReference type="GO" id="GO:0019563">
        <property type="term" value="P:glycerol catabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniPathway"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006071">
        <property type="term" value="P:glycerol metabolic process"/>
        <property type="evidence" value="ECO:0000250"/>
        <property type="project" value="UniProtKB"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006072">
        <property type="term" value="P:glycerol-3-phosphate metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016310">
        <property type="term" value="P:phosphorylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00186">
        <property type="entry name" value="Glycerol_kin"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043129">
        <property type="entry name" value="ATPase_NBD"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000577">
        <property type="entry name" value="Carb_kinase_FGGY"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018485">
        <property type="entry name" value="Carb_kinase_FGGY_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018483">
        <property type="entry name" value="Carb_kinase_FGGY_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018484">
        <property type="entry name" value="Carb_kinase_FGGY_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005999">
        <property type="entry name" value="Glycerol_kin"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02782">
        <property type="entry name" value="FGGY_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00370">
        <property type="entry name" value="FGGY_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF000538">
        <property type="entry name" value="GlpK"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53067">
        <property type="entry name" value="SSF53067"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01311">
        <property type="entry name" value="glycerol_kin"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00933">
        <property type="entry name" value="FGGY_KINASES_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00445">
        <property type="entry name" value="FGGY_KINASES_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword id="KW-0067">ATP-binding</keyword>
    <keyword id="KW-0319">Glycerol metabolism</keyword>
    <keyword id="KW-0418">Kinase</keyword>
    <keyword id="KW-0547">Nucleotide-binding</keyword>
    <keyword id="KW-1185">Reference proteome</keyword>
    <keyword id="KW-0808">Transferase</keyword>
    <feature type="chain" id="PRO_1000098728" description="Glycerol kinase">
        <location>
            <begin position="1"/>
            <end position="498"/>
        </location>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <begin position="11"/>
            <end position="13"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <position position="11"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <position position="15"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <begin position="81"/>
            <end position="82"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <position position="133"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <begin position="242"/>
            <end position="243"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <position position="264"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <position position="307"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <position position="311"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <begin position="412"/>
            <end position="416"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000255" key="1">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00186"/>
        </source>
    </evidence>
    <sequence length="498" mass="53089" checksum="342D8AACE5FEC5FD" modified="2008-01-15" version="1">MTYLLALDQGTSSSRSIVFDTQGRIVASAQLELPQIYPRPGWVEHDPREIWRTQLATAREALAKAGLAAADIRALGITNQRETTVVWNRATGQPIHHAIVWQDRRAEPLCAQLREAGHADTIQRKTGLLIDAYFSGTKLRWILDNVNGARAAAERGELAFGTVDSWLIWQLTGGRRHVTDVSNASRTMLFNVHTNQWDDDLLALLEIPRALMPEVLPSAADFGRTAAEVLGGEIAIGGVAGDQQSALFGQACFSAGMAKNTYGTGCFMLMHTGGVFQTSANGLLTTAAAQPTAAPAYALEGSVFVGGAVVQWLRDGLRAIEHSGQVQQLAESVPDSGGVMMVPAFTGLGAPYWKPDARGTITGLTRGTTIAHIARAALESIAFQSAALLLAMSRDAVASGGAPVSELRVDGGACVNNLLMQFQADLLGIPVVRPACVETTALGAAYLAGLSSGVYQSTEELSALWKAERRFVPTLDKHRADELMARWEHAVAQTALAA</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="64" xmlns="http://uniprot.org/uniprot">
    <accession>A9BRZ6</accession>
    <name>A9BRZ6_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Secretion protein HlyD family protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ordered locus">Daci_0760</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="5" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX33406.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012202692.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_0760"/>
    <dbReference type="PRIDE" id="A9BRZ6"/>
    <dbReference type="EnsemblBacteria" id="ABX33406">
        <property type="protein sequence ID" value="ABX33406"/>
        <property type="gene ID" value="Daci_0760"/>
    </dbReference>
    <dbReference type="GeneID" id="60685317"/>
    <dbReference type="KEGG" id="dac:Daci_0760"/>
    <dbReference type="eggNOG" id="COG0845">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_018816_6_0_4"/>
    <dbReference type="OMA" id="KIGMYGE"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR039562">
        <property type="entry name" value="MFP_biotin_lipoyl_2"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13533">
        <property type="entry name" value="Biotin_lipoyl_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="2" id="KW-0472">Membrane</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="2" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="12"/>
            <end position="28"/>
        </location>
    </feature>
    <feature type="domain" description="Biotin_lipoyl_2" evidence="3">
        <location>
            <begin position="53"/>
            <end position="93"/>
        </location>
    </feature>
    <feature type="coiled-coil region" evidence="1">
        <location>
            <begin position="84"/>
            <end position="139"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF13533"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="ABX33406.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="363" mass="39167" checksum="0AD77B18976473FB" modified="2008-01-15" version="1">MDKNTSLKNKIVPIAAVAVLALVAWWAWKTFTPKGPGEGFVGSNGRVEATEIDISTKLPGRVEEILVREGDFVQAGQPVARMQIDTLRAQRQEADAMRQQAEHSVAAAEAQVTLRRSDLAAAQALIVQRETEVDAAQRRFKRSETLAREGASSVQELDDDRARVRGSEAALAATRAQAAAAQAAVKAAEAQVVGVRSQVQAATATVARVQADIDDGVLKAPRDGRVQLRVAQPGEVLGAGGRVLNLLDLSDVYMTFFVPETAAGRIALGSEVRLVLDAAPEYVIPARVSFVASQAQFTPKTVETASERQKLMFRVRAQIPPELLRRHLEQVKTGVPGMAWLRTDASHEWPANLAIKLPAQPAQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="72" xmlns="http://uniprot.org/uniprot">
    <accession>A9BSA0</accession>
    <name>A9BSA0_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Pyridoxal phosphate homeostasis protein</fullName>
            <shortName evidence="1">PLP homeostasis protein</shortName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="5" type="ordered locus">Daci_1069</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="6" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="1">Pyridoxal 5'-phosphate (PLP)-binding protein, which is involved in PLP homeostasis.</text>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="2">
            <name>pyridoxal 5'-phosphate</name>
            <dbReference type="ChEBI" id="CHEBI:597326"/>
        </cofactor>
    </comment>
    <comment type="similarity">
        <text evidence="1 3">Belongs to the pyridoxal phosphate-binding protein YggS/PROSC family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX33714.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012203000.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_1069"/>
    <dbReference type="PRIDE" id="A9BSA0"/>
    <dbReference type="EnsemblBacteria" id="ABX33714">
        <property type="protein sequence ID" value="ABX33714"/>
        <property type="gene ID" value="Daci_1069"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_1069"/>
    <dbReference type="eggNOG" id="COG0325">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_059988_0_1_4"/>
    <dbReference type="OMA" id="IEWHMIG"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030170">
        <property type="term" value="F:pyridoxal phosphate binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.20.20.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_02087">
        <property type="entry name" value="PLP_homeostasis"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001608">
        <property type="entry name" value="Ala_racemase_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029066">
        <property type="entry name" value="PLP-binding_barrel"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011078">
        <property type="entry name" value="PyrdxlP_homeostasis"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10146">
        <property type="entry name" value="PTHR10146"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01168">
        <property type="entry name" value="Ala_racemase_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF004848">
        <property type="entry name" value="YBL036c_PLPDEIII"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51419">
        <property type="entry name" value="SSF51419"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00044">
        <property type="entry name" value="TIGR00044"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="1 2" id="KW-0663">Pyridoxal phosphate</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Ala_racemase_N" evidence="4">
        <location>
            <begin position="9"/>
            <end position="236"/>
        </location>
    </feature>
    <feature type="modified residue" description="N6-(pyridoxal phosphate)lysine" evidence="1 2">
        <location>
            <position position="36"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_02087"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="PIRSR" id="PIRSR004848-1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="RuleBase" id="RU004514"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="Pfam" id="PF01168"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="ABX33714.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="241" mass="25672" checksum="9D2B83D5DE1A0A57" modified="2008-01-15" version="1">MTTIENKLQQIHERIASACAQAGRASGSVQLLSVSKTFGADAVREAVLAGERSFGENYIQEGVDKIAAVRAMGLPGGETLQWHCIGPIQSNKTRLVAEHFDWAQTVDRLKIAERLSAQRPEGLAPLQVCIQLNVDGGETKAGVAPQQALELAAAIVQLPRLALRGVMSIPDDAPGFEAQREVHARATTVFEQIRASGLPGLERFDTVSMGMTGDLEAAVAAGSTMVRVGSGIFGQRNYAPR</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="66" xmlns="http://uniprot.org/uniprot">
    <accession>A9BSB9</accession>
    <name>A9BSB9_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Efflux transporter, RND family, MFP subunit</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ordered locus">Daci_1088</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="6" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX33733.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012203019.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_1088"/>
    <dbReference type="PRIDE" id="A9BSB9"/>
    <dbReference type="EnsemblBacteria" id="ABX33733">
        <property type="protein sequence ID" value="ABX33733"/>
        <property type="gene ID" value="Daci_1088"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_1088"/>
    <dbReference type="eggNOG" id="COG0845">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="eggNOG" id="COG4531">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_018816_13_0_4"/>
    <dbReference type="OMA" id="SYPKQTF"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016020">
        <property type="term" value="C:membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0022857">
        <property type="term" value="F:transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR032317">
        <property type="entry name" value="HlyD_D23"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006143">
        <property type="entry name" value="RND_pump_MFP"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006311">
        <property type="entry name" value="TAT_signal"/>
    </dbReference>
    <dbReference type="Pfam" id="PF16576">
        <property type="entry name" value="HlyD_D23"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01730">
        <property type="entry name" value="RND_mfp"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51318">
        <property type="entry name" value="TAT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HlyD_D23" evidence="4">
        <location>
            <begin position="142"/>
            <end position="374"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="3">
        <location>
            <begin position="39"/>
            <end position="114"/>
        </location>
    </feature>
    <feature type="coiled-coil region" evidence="2">
        <location>
            <begin position="225"/>
            <end position="252"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="3">
        <location>
            <begin position="46"/>
            <end position="60"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="3">
        <location>
            <begin position="68"/>
            <end position="95"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00009477"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="Pfam" id="PF16576"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="ABX33733.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="459" mass="47816" checksum="82F732C23CCA000C" modified="2008-01-15" version="1">MNTKPSSSPLGPRRTLVAIAVILALGALAATLILRSGTPGAAKADSHGHGHSEAAGHADGEHHGATAAAAADGHKHDEGHADDEHHEDSKAEKAEAKPAAQPAAKPAAEAGHGDDEGLIAMDAQRMQAAGVRLAEAGPATVRSVLQLPGEIRFNEDRTAHVVPRVAGIAESVPANLGQNVKKGQLLAVLSSAAVSEQRSELLAASKRLELARTTYAREKQLWEEKVSAEQDYLQARQALREAEIAVSNAQQKLAATGAGAGGGAGGLNRFELRAPFDGVIVEKHLSVGEAVQDTTQVFTISDLRSVWAEMRVAAPDLPAVRVGEKATVRATAFDSSATGEVAYVGALIGQDTRTAPARITLPNPDGVWRPGLFVNVELTASSRQAPLAVAAQALQKMEQQTVVFVPVQGGFRAQPVRVGRSDGKATEVLEGLKPGQSYVAEGSFMLKAELGKASAEHSH</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-01-19" version="87" xmlns="http://uniprot.org/uniprot">
    <accession>A9BSK4</accession>
    <name>A9BSK4_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="9">Polar amino acid ABC transporter, inner membrane subunit</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="9" type="ordered locus">Daci_1365</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="9 10" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="10" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="7">Cell membrane</location>
            <topology evidence="7">Multi-pass membrane protein</topology>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the binding-protein-dependent transport system permease family. HisMQ subfamily.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX34009.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012203295.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_1365"/>
    <dbReference type="EnsemblBacteria" id="ABX34009">
        <property type="protein sequence ID" value="ABX34009"/>
        <property type="gene ID" value="Daci_1365"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_1365"/>
    <dbReference type="eggNOG" id="COG0765">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_019602_1_3_4"/>
    <dbReference type="OMA" id="GIEIYLA"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043190">
        <property type="term" value="C:ATP-binding cassette (ABC) transporter complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0022857">
        <property type="term" value="F:transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006865">
        <property type="term" value="P:amino acid transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd06261">
        <property type="entry name" value="TM_PBP2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.3720.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010065">
        <property type="entry name" value="AA_ABC_transptr_permease_3TM"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043429">
        <property type="entry name" value="ArtM/GltK/GlnP/TcyL/YhdX-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR030202">
        <property type="entry name" value="GltJ/AatQ"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000515">
        <property type="entry name" value="MetI-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035906">
        <property type="entry name" value="MetI-like_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30614">
        <property type="entry name" value="PTHR30614"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30614:SF42">
        <property type="entry name" value="PTHR30614:SF42"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00528">
        <property type="entry name" value="BPD_transp_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF161098">
        <property type="entry name" value="SSF161098"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01726">
        <property type="entry name" value="HEQRo_perm_3TM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50928">
        <property type="entry name" value="ABC_TM1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-0029">Amino-acid transport</keyword>
    <keyword evidence="6 7" id="KW-0472">Membrane</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 7" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="5 7" id="KW-1133">Transmembrane helix</keyword>
    <keyword evidence="7" id="KW-0813">Transport</keyword>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="37"/>
            <end position="60"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="81"/>
            <end position="102"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="108"/>
            <end position="127"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="155"/>
            <end position="173"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="211"/>
            <end position="233"/>
        </location>
    </feature>
    <feature type="domain" description="ABC transmembrane type-1" evidence="8">
        <location>
            <begin position="38"/>
            <end position="230"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00010072"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022970"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="RuleBase" id="RU363032"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="PROSITE" id="PS50928"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="ABX34009.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="250" mass="27831" checksum="81936211F274A3EE" modified="2008-01-15" version="1">MSWDWQVFCQDTITQEVGQSCFGKNGDITYLDWMLSAWGWTISVSLLSLVIALVVGSLIGTLRTLEGRPWIVRLGNAWVELFRNIPLLVHIFMWYHVVPSFVPALKSLPGFVLVVLALGFFTSARIAEQVRSGIQALPRGQRYAGMAMGFTTFQYYRYVLLPMAFRIIIPPLTSETMNVFKNSSVAFAVSVAELTMFAMQAQEETSRGIEIYLAVTGLYVVSAFAINRIMAFIEKRSRVPGLIAASGGGH</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="38" xmlns="http://uniprot.org/uniprot">
    <accession>A9BSR8</accession>
    <name>A9BSR8_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Daci_1429</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="2" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX34073.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="PRIDE" id="A9BSR8"/>
    <dbReference type="EnsemblBacteria" id="ABX34073">
        <property type="protein sequence ID" value="ABX34073"/>
        <property type="gene ID" value="Daci_1429"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_1429"/>
    <dbReference type="eggNOG" id="ENOG5033F5V">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_2524909_0_0_4"/>
    <dbReference type="OMA" id="CINNGAM"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ABX34073.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="87" mass="9965" checksum="AA3996A98D5DD387" modified="2008-01-15" version="1">MAKYLCKCGYVFILSTGCEDYDCRIVKNPKIEEIGDCINNGAMNEEDFYDQIDSGALSIYICPECSRVHISNPDLYSRLFSVYKKED</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="68" xmlns="http://uniprot.org/uniprot">
    <accession>A9BT08</accession>
    <name>A9BT08_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="7">Porin, gram-negative type</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ordered locus">Daci_1725</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="8" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX34368.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012203653.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_1725"/>
    <dbReference type="PRIDE" id="A9BT08"/>
    <dbReference type="EnsemblBacteria" id="ABX34368">
        <property type="protein sequence ID" value="ABX34368"/>
        <property type="gene ID" value="Daci_1725"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_1725"/>
    <dbReference type="eggNOG" id="COG3203">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_038238_1_1_4"/>
    <dbReference type="OMA" id="WARIANS"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046930">
        <property type="term" value="C:pore complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015288">
        <property type="term" value="F:porin activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006811">
        <property type="term" value="P:ion transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd00342">
        <property type="entry name" value="gram_neg_porins"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.160.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR033900">
        <property type="entry name" value="Gram_neg_porin_domain"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023614">
        <property type="entry name" value="Porin_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002299">
        <property type="entry name" value="Porin_Neis"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13609">
        <property type="entry name" value="Porin_4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00184">
        <property type="entry name" value="NEISSPPORIN"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-0406">Ion transport</keyword>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-0626">Porin</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="5" id="KW-0732">Signal</keyword>
    <keyword evidence="2" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1134">Transmembrane beta strand</keyword>
    <keyword evidence="4" id="KW-0813">Transport</keyword>
    <feature type="signal peptide" evidence="5">
        <location>
            <begin position="1"/>
            <end position="20"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5002733054" evidence="5">
        <location>
            <begin position="21"/>
            <end position="348"/>
        </location>
    </feature>
    <feature type="domain" description="Porin_4" evidence="6">
        <location>
            <begin position="10"/>
            <end position="318"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022452"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023065"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023114"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="Pfam" id="PF13609"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="ABX34368.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="348" mass="36818" checksum="B00235F9C41B656C" modified="2008-01-15" version="1">MNLKHIVALSLAGIAASASAQSSVTLFGIVDVNTRYVNNSNLPSNLTMNNSGLSSGRFGFRGVEDLGGGLKAGFWLESDVNADTGTFSSTGKFFQRRSTISLMGNFGEVRLGRDFSPASINATKFDPFNVIGLAGSNVTSRLPGTIASYYRYDNAIQYFSPKFAGFQAEAMYAMDEDPLTKVGRHMAGRLAYDNGPLSLSLSYGATDVTTAGAKLKQYGAAASYNFGVATLMGYFQRDDLPFGTYGSRAAGSEDRWQVGVTVPVGKDYIRASYVRTDSRKGPVGYNQSDANKYAIGYVHNMSTRTAVYGTIARITNKGGANFSLVGGASGLAGGGSSTGAEVGIRHSF</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="39" xmlns="http://uniprot.org/uniprot">
    <accession>A9BTE9</accession>
    <name>A9BTE9_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Daci_2277</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="2" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX34917.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_2277"/>
    <dbReference type="PRIDE" id="A9BTE9"/>
    <dbReference type="EnsemblBacteria" id="ABX34917">
        <property type="protein sequence ID" value="ABX34917"/>
        <property type="gene ID" value="Daci_2277"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_2277"/>
    <dbReference type="eggNOG" id="ENOG5033M5W">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_992971_0_0_4"/>
    <dbReference type="OMA" id="WLIARES"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ABX34917.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="280" mass="30633" checksum="EA80A15BB54DF183" modified="2008-01-15" version="1">MSSFPVLSDHDYLNFVGAIRHRGANESTHVAEVRYPVQRAGVTSVVKLMRPDGIGLCNEAIAWLFLRAIGLPVPQHAGILIMTEKKAKAVLGRSAVPTELVSGGYVLAWASQQLAFSSIRALFSGCEGDAKWLDVLRTDTGAAIAAFDELFHNIDRNLGNVLFHGKGSCIPIDHEQIFAVQNWIAGEIQQLAGNGDSLRALNRAHTGKKLSTSDWTRVRDTMVACSQHHKGALDVCRVQVLELLTTLFKGAGSIYANRILSFVDLRCQDNWMQQRVGALT</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="32" xmlns="http://uniprot.org/uniprot">
    <accession>A9BTF0</accession>
    <name>A9BTF0_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Daci_2278</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="2" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX34918.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_2278"/>
    <dbReference type="PRIDE" id="A9BTF0"/>
    <dbReference type="EnsemblBacteria" id="ABX34918">
        <property type="protein sequence ID" value="ABX34918"/>
        <property type="gene ID" value="Daci_2278"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_2278"/>
    <dbReference type="eggNOG" id="ENOG5033H0H">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_911134_0_0_4"/>
    <dbReference type="OMA" id="TIEEHEW"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ABX34918.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="292" mass="32941" checksum="ADED90637BB21681" modified="2008-01-15" version="1">MINLRALAESVSSEAPNFEGKWHTIDFQPELDVPQTFVIGVALSEKGRLVDFRVAEDASRLKCFYGKRFSNETWGWLRNELLADLKANKGNGIAKYESPSPQISFGIGHYASGTDRLSVLARTFQRVVTVIPNEVKPRVYGMAQQDLRSQMAGLLKQRLGTQFEVIHQDEDCYRVVDGSTVHTFDVNYDNLKVASSVVSASYVNLATAQLNLSSSMSDLLMFNKLRPREQLGLAILVPSKNTLPSASVYAWEKWWENMSYKLKESELMLLAEADQPEILAEIMQDWYVSDIC</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="67" xmlns="http://uniprot.org/uniprot">
    <accession>A9BTI4</accession>
    <name>A9BTI4_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="9">Porin Gram-negative type</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="9" type="ordered locus">Daci_2314</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="9 10" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="10" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX34952.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012204234.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_2314"/>
    <dbReference type="PRIDE" id="A9BTI4"/>
    <dbReference type="EnsemblBacteria" id="ABX34952">
        <property type="protein sequence ID" value="ABX34952"/>
        <property type="gene ID" value="Daci_2314"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_2314"/>
    <dbReference type="eggNOG" id="COG3203">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_038238_2_2_4"/>
    <dbReference type="OMA" id="SAEGGDW"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
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        <property type="term" value="C:cell outer membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
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    <dbReference type="GO" id="GO:0046930">
        <property type="term" value="C:pore complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015288">
        <property type="term" value="F:porin activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
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        <property type="term" value="P:ion transmembrane transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
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        <property type="entry name" value="gram_neg_porins"/>
        <property type="match status" value="1"/>
    </dbReference>
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        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR033900">
        <property type="entry name" value="Gram_neg_porin_domain"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023614">
        <property type="entry name" value="Porin_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001702">
        <property type="entry name" value="Porin_Gram-ve"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002299">
        <property type="entry name" value="Porin_Neis"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13609">
        <property type="entry name" value="Porin_4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00182">
        <property type="entry name" value="ECOLNEIPORIN"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00184">
        <property type="entry name" value="NEISSPPORIN"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-0406">Ion transport</keyword>
    <keyword evidence="6" id="KW-0472">Membrane</keyword>
    <keyword evidence="5" id="KW-0626">Porin</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="7" id="KW-0732">Signal</keyword>
    <keyword evidence="3" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="2" id="KW-1134">Transmembrane beta strand</keyword>
    <keyword evidence="1" id="KW-0813">Transport</keyword>
    <feature type="signal peptide" evidence="7">
        <location>
            <begin position="1"/>
            <end position="23"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5002735081" evidence="7">
        <location>
            <begin position="24"/>
            <end position="350"/>
        </location>
    </feature>
    <feature type="domain" description="Porin_4" evidence="8">
        <location>
            <begin position="11"/>
            <end position="320"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022448"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022452"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023065"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023114"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="Pfam" id="PF13609"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="ABX34952.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="350" mass="36936" checksum="B1DCF5341C266439" modified="2008-01-15" version="1">MARRTIQRLGTALALGTALAAQAQSSVTLYGRVVAGVDYQSNVYDPATGGSGNLWRAVGNQWGTSMLGFKGEEDLGGGLHALFTLESGFSIDDAKFNGAGFFNRRTFVGLRSGWGTLKLGKDLSISDAHWALDPTGQQFIGSATLVRGRNWGGHDNMISYETPSWGGLGVLALTGLGEQPQGASRLRKDALSVSYTAPTFELRAIYDVARDANGRFSDLYTTSRNLTLGGTVTLSAFKLFAGYEQLSAPDSAAGVPNKARQYWMGARYKVSGPLTLIGAGYRTTVNNGGGSANLFMAGADYALSKRTLLYASVGNVRNGGNANFSVETTNNNPAPGGSQTGFYVGMAHSF</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="62" xmlns="http://uniprot.org/uniprot">
    <accession>A9BTT3</accession>
    <name>A9BTT3_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Heavy metal efflux pump, CzcA family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ordered locus">Daci_2709</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
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                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="5" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX35347.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012204573.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_2709"/>
    <dbReference type="PRIDE" id="A9BTT3"/>
    <dbReference type="EnsemblBacteria" id="ABX35347">
        <property type="protein sequence ID" value="ABX35347"/>
        <property type="gene ID" value="Daci_2709"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_2709"/>
    <dbReference type="eggNOG" id="COG3696">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_002755_1_2_4"/>
    <dbReference type="OMA" id="GDNVIFW"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
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        <property type="term" value="F:cation transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
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        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027463">
        <property type="entry name" value="AcrB_DN_DC_subdom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001036">
        <property type="entry name" value="Acrflvin-R"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004763">
        <property type="entry name" value="CzcA/CusA/SilA/NccA/HelA/CnrA"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR32063">
        <property type="entry name" value="PTHR32063"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00873">
        <property type="entry name" value="ACR_tran"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00702">
        <property type="entry name" value="ACRIFLAVINRP"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF82714">
        <property type="entry name" value="SSF82714"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00914">
        <property type="entry name" value="2A0601"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-0472">Membrane</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="3" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="3">
        <location>
            <begin position="339"/>
            <end position="356"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="3">
        <location>
            <begin position="363"/>
            <end position="383"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="3">
        <location>
            <begin position="389"/>
            <end position="410"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="3">
        <location>
            <begin position="439"/>
            <end position="459"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="3">
        <location>
            <begin position="471"/>
            <end position="498"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="3">
        <location>
            <begin position="519"/>
            <end position="546"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="3">
        <location>
            <begin position="864"/>
            <end position="883"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="3">
        <location>
            <begin position="890"/>
            <end position="909"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="3">
        <location>
            <begin position="921"/>
            <end position="941"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="3">
        <location>
            <begin position="962"/>
            <end position="981"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="3">
        <location>
            <begin position="993"/>
            <end position="1016"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00010942"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="ABX35347.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="1031" mass="109338" checksum="8FC018C40C8801F2" modified="2008-01-15" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="65" xmlns="http://uniprot.org/uniprot">
    <accession>A9BTX3</accession>
    <name>A9BTX3_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="7">Cytochrome c class I</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ordered locus">Daci_2749</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="8" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX35387.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
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    <dbReference type="EnsemblBacteria" id="ABX35387">
        <property type="protein sequence ID" value="ABX35387"/>
        <property type="gene ID" value="Daci_2749"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_2749"/>
    <dbReference type="eggNOG" id="COG4654">
        <property type="taxonomic scope" value="Bacteria"/>
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    <dbReference type="Proteomes" id="UP000000784">
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    </dbReference>
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        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0020037">
        <property type="term" value="F:heme binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005506">
        <property type="term" value="F:iron ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
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        <property type="match status" value="1"/>
    </dbReference>
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        <property type="entry name" value="Cyt_c-like_dom"/>
    </dbReference>
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        <property type="entry name" value="Cyt_c-like_dom_sf"/>
    </dbReference>
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        <property type="entry name" value="Cyt_c_ID"/>
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        <property type="entry name" value="CYTCHROMECID"/>
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    <keyword evidence="5" id="KW-0732">Signal</keyword>
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            <end position="102"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
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        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
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        <source>
            <dbReference type="ARBA" id="ARBA00023004"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00433"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="PROSITE" id="PS51007"/>
        </source>
    </evidence>
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        <source>
            <dbReference type="EMBL" id="ABX35387.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="102" mass="10659" checksum="43B98E625B7E21EE" modified="2008-01-15" version="1">MMKQTLIAFALTVVTVAPAMADQALATSKNCMACHAVDKKLVGPSYKDVASKYAGQKDAVDKLAAKIMKGGSGVWGPVPMPANPQVNDADAKKLAAWVLSLK</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="58" xmlns="http://uniprot.org/uniprot">
    <accession>A9BTZ8</accession>
    <name>A9BTZ8_DELAS</name>
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        <submittedName>
            <fullName evidence="2">PepSY-associated TM helix domain protein</fullName>
        </submittedName>
    </protein>
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    </gene>
    <organism evidence="2 3">
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        <lineage>
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    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
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                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
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        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
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    </dbReference>
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    <dbReference type="EnsemblBacteria" id="ABX35713">
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        <property type="gene ID" value="Daci_3075"/>
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        <property type="project" value="UniProtKB-KW"/>
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    </dbReference>
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    </dbReference>
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    </dbReference>
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        <location>
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            <end position="36"/>
        </location>
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        <location>
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            <end position="188"/>
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        <location>
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        </location>
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        <location>
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            <end position="473"/>
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    </feature>
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        <location>
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            <end position="502"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="514"/>
            <end position="536"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX35713.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="557" mass="61849" checksum="EB3E09D013B374CB" modified="2008-01-15" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="48" xmlns="http://uniprot.org/uniprot">
    <accession>A9BU10</accession>
    <name>A9BU10_DELAS</name>
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        <submittedName>
            <fullName evidence="3">Prophage antirepressor</fullName>
        </submittedName>
    </protein>
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        <name evidence="3" type="ordered locus">Daci_3087</name>
    </gene>
    <organism evidence="3 4">
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        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
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        </lineage>
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    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
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                <person name="Fischer K."/>
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            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="4" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX35725.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
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        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
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    <dbReference type="EnsemblBacteria" id="ABX35725">
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        <property type="gene ID" value="Daci_3087"/>
    </dbReference>
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    </dbReference>
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    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
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        <location>
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            <end position="121"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
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            <end position="148"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="116"/>
            <end position="136"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS51750"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ABX35725.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="317" mass="35883" checksum="54E7CDC8C459D4E7" modified="2008-01-15" version="1">MALRSPSRAVPADDITPQTFHFGDIPIRTFPRNGVIWFMAKDVCTALGISRHKLATGKLAEDQRCTVRLASEPGRKPRREAVAAVNADGLHALIQASPSPETKRFKRWVQRKVLGAKDAPAKDSKPKYKTKSGRDAKHPPQSLIPGPAPKVLRRIRTCDDLSFTRRNAKGERIQWFVPPRVNSGHEHYGIGEIWFSEVVELARHNPRHAYDAMRFAGPEMARYWNHGHPDGFFDRMARWALGAILANAQEPALPFELPCLGFAPLEGMEAMLATAAAPRPLPDHVQEAIDRQAWQEAAECQRHYYERRRRDLMARRD</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="64" xmlns="http://uniprot.org/uniprot">
    <accession>A9BU94</accession>
    <name>A9BU94_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Aldehyde oxidase and xanthine dehydrogenase molybdopterin binding</fullName>
        </submittedName>
    </protein>
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        <name evidence="2" type="ordered locus">Daci_3171</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
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        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
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    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
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                <person name="Fischer K."/>
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            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX35809.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012205009.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_3171"/>
    <dbReference type="PRIDE" id="A9BU94"/>
    <dbReference type="EnsemblBacteria" id="ABX35809">
        <property type="protein sequence ID" value="ABX35809"/>
        <property type="gene ID" value="Daci_3171"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_3171"/>
    <dbReference type="eggNOG" id="COG1529">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
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    <dbReference type="OMA" id="ANDRYEQ"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005506">
        <property type="term" value="F:iron ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016491">
        <property type="term" value="F:oxidoreductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036856">
        <property type="entry name" value="Ald_Oxase/Xan_DH_a/b_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016208">
        <property type="entry name" value="Ald_Oxase/xanthine_DH"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008274">
        <property type="entry name" value="AldOxase/xan_DH_Mopterin-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037165">
        <property type="entry name" value="AldOxase/xan_DH_Mopterin-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006311">
        <property type="entry name" value="TAT_signal"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019546">
        <property type="entry name" value="TAT_signal_bac_arc"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11908">
        <property type="entry name" value="PTHR11908"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02738">
        <property type="entry name" value="Ald_Xan_dh_C2"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54665">
        <property type="entry name" value="SSF54665"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56003">
        <property type="entry name" value="SSF56003"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01409">
        <property type="entry name" value="TAT_signal_seq"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51318">
        <property type="entry name" value="TAT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Ald_Xan_dh_C2" evidence="1">
        <location>
            <begin position="274"/>
            <end position="606"/>
        </location>
    </feature>
    <feature type="domain" description="Ald_Xan_dh_C2" evidence="1">
        <location>
            <begin position="807"/>
            <end position="910"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF02738"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX35809.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="973" mass="105653" checksum="CB98D9CE05778C1A" modified="2008-01-15" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="55" xmlns="http://uniprot.org/uniprot">
    <accession>A9BUA6</accession>
    <name>A9BUA6_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ordered locus">Daci_1164</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="5" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Periplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the UPF0065 (bug) family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX33809.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012203095.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_1164"/>
    <dbReference type="PRIDE" id="A9BUA6"/>
    <dbReference type="EnsemblBacteria" id="ABX33809">
        <property type="protein sequence ID" value="ABX33809"/>
        <property type="gene ID" value="Daci_1164"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_1164"/>
    <dbReference type="eggNOG" id="COG3181">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_045683_0_0_4"/>
    <dbReference type="OMA" id="VHANLKW"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0042597">
        <property type="term" value="C:periplasmic space"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.190.150">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005064">
        <property type="entry name" value="BUG"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR042100">
        <property type="entry name" value="Bug_dom1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR42928">
        <property type="entry name" value="PTHR42928"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03401">
        <property type="entry name" value="TctC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF017082">
        <property type="entry name" value="YflP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="3">
        <location>
            <begin position="1"/>
            <end position="28"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5002732521" evidence="3">
        <location>
            <begin position="29"/>
            <end position="332"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004418"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00006987"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="ABX33809.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="332" mass="34802" checksum="C92CB539B69ACE19" modified="2008-01-15" version="1">MTRPLTPKHLATLGLLAALCACAQAAQAAQTAQATFPDRPVRVIVPFPAGGSTDLVARALSVELGQALGQPVVVENKPGAGSLVGSELVVRAAPDGYTLLMAGLSNVFLPHVHANLKWNPLTDYEYIGLVADLPNVIAVNAKTPYRTLAELVAADKARPGTLSFGSAGTATPSHLVCEMVNHRLGTKMQHLPYKGNAPAVNDLMAGHIPVMCNNLGGTLPYMQGGQIRILAQTGKSRSPAAPDIPTFAELGVAGLDTGLWVGLAAPKGTPQQIVATLNQALAKAMALPETRDKLARLGATPLPTQTADFHKRVAEDRRAWEPVLKNVDLKGN</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="83" xmlns="http://uniprot.org/uniprot">
    <accession>A9BUB3</accession>
    <name>A9BUB3_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="14">TonB-dependent siderophore receptor</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="14" type="ordered locus">Daci_1171</name>
    </gene>
    <organism evidence="14 15">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="14 15" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="15">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="15" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="15">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="10">Cell outer membrane</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="1 10">Belongs to the TonB-dependent receptor family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX33816.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012203102.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_1171"/>
    <dbReference type="PRIDE" id="A9BUB3"/>
    <dbReference type="EnsemblBacteria" id="ABX33816">
        <property type="protein sequence ID" value="ABX33816"/>
        <property type="gene ID" value="Daci_1171"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_1171"/>
    <dbReference type="eggNOG" id="COG4773">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_008287_9_3_4"/>
    <dbReference type="OMA" id="RATYSHK"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009279">
        <property type="term" value="C:cell outer membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015344">
        <property type="term" value="F:siderophore uptake transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0038023">
        <property type="term" value="F:signaling receptor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0055072">
        <property type="term" value="P:iron ion homeostasis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.170.130.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.170.20">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012910">
        <property type="entry name" value="Plug_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037066">
        <property type="entry name" value="Plug_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011662">
        <property type="entry name" value="Secretin/TonB_short_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR039423">
        <property type="entry name" value="TonB-dep_rcpt"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000531">
        <property type="entry name" value="TonB-dep_rcpt_b-brl"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036942">
        <property type="entry name" value="TonB_rcpt_b-brl_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010917">
        <property type="entry name" value="TonB_rcpt_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010105">
        <property type="entry name" value="TonB_sidphr_rcpt"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR32552">
        <property type="entry name" value="PTHR32552"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07715">
        <property type="entry name" value="Plug"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07660">
        <property type="entry name" value="STN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00593">
        <property type="entry name" value="TonB_dep_Rec"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00965">
        <property type="entry name" value="STN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01783">
        <property type="entry name" value="TonB-siderophor"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01156">
        <property type="entry name" value="TONB_DEPENDENT_REC_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="9" id="KW-0998">Cell outer membrane</keyword>
    <keyword evidence="3" id="KW-0406">Ion transport</keyword>
    <keyword evidence="5" id="KW-0408">Iron</keyword>
    <keyword evidence="3" id="KW-0410">Iron transport</keyword>
    <keyword evidence="7 10" id="KW-0472">Membrane</keyword>
    <keyword evidence="8 14" id="KW-0675">Receptor</keyword>
    <keyword evidence="15" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4 12" id="KW-0732">Signal</keyword>
    <keyword evidence="6 10" id="KW-0798">TonB box</keyword>
    <keyword evidence="2" id="KW-0813">Transport</keyword>
    <feature type="signal peptide" evidence="12">
        <location>
            <begin position="1"/>
            <end position="26"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5002735102" evidence="12">
        <location>
            <begin position="27"/>
            <end position="803"/>
        </location>
    </feature>
    <feature type="domain" description="STN" evidence="13">
        <location>
            <begin position="50"/>
            <end position="101"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="11">
        <location>
            <begin position="128"/>
            <end position="149"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00009810"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022448"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022496"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022729"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023004"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023077"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00023170"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00023237"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="RuleBase" id="RU003357"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="12">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="13">
        <source>
            <dbReference type="SMART" id="SM00965"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="14">
        <source>
            <dbReference type="EMBL" id="ABX33816.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="15">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="803" mass="86617" checksum="8F35930E5ADE803D" modified="2008-01-15" version="1"> </sequence>
</entry>
<entry dataset="Swiss-Prot" created="2009-04-14" modified="2022-08-03" version="79" xmlns="http://uniprot.org/uniprot">
    <accession>A9BUE9</accession>
    <name>DTD_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">D-aminoacyl-tRNA deacylase</fullName>
            <shortName evidence="1">DTD</shortName>
            <ecNumber evidence="1">3.1.1.96</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="1">Gly-tRNA(Ala) deacylase</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="1" type="primary">dtd</name>
        <name type="ordered locus">Daci_1207</name>
    </gene>
    <organism>
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference key="1">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain>DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="1">An aminoacyl-tRNA editing enzyme that deacylates mischarged D-aminoacyl-tRNAs. Also deacylates mischarged glycyl-tRNA(Ala), protecting cells against glycine mischarging by AlaRS. Acts via tRNA-based rather than protein-based catalysis; rejects L-amino acids rather than detecting D-amino acids in the active site. By recycling D-aminoacyl-tRNA to D-amino acids and free tRNA molecules, this enzyme counteracts the toxicity associated with the formation of D-aminoacyl-tRNA entities in vivo and helps enforce protein L-homochirality.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>glycyl-tRNA(Ala) + H2O = glycine + H(+) + tRNA(Ala)</text>
            <dbReference type="Rhea" id="RHEA:53744"/>
            <dbReference type="Rhea" id="RHEA-COMP:9657"/>
            <dbReference type="Rhea" id="RHEA-COMP:13640"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:57305"/>
            <dbReference type="ChEBI" id="CHEBI:78442"/>
            <dbReference type="ChEBI" id="CHEBI:78522"/>
            <dbReference type="EC" id="3.1.1.96"/>
        </reaction>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>a D-aminoacyl-tRNA + H2O = a D-alpha-amino acid + a tRNA + H(+)</text>
            <dbReference type="Rhea" id="RHEA:13953"/>
            <dbReference type="Rhea" id="RHEA-COMP:10123"/>
            <dbReference type="Rhea" id="RHEA-COMP:10124"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:59871"/>
            <dbReference type="ChEBI" id="CHEBI:78442"/>
            <dbReference type="ChEBI" id="CHEBI:79333"/>
            <dbReference type="EC" id="3.1.1.96"/>
        </reaction>
    </comment>
    <comment type="subunit">
        <text evidence="1">Homodimer.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="domain">
        <text evidence="1">A Gly-cisPro motif from one monomer fits into the active site of the other monomer to allow specific chiral rejection of L-amino acids.</text>
    </comment>
    <comment type="similarity">
        <text evidence="1">Belongs to the DTD family.</text>
    </comment>
    <dbReference type="EC" id="3.1.1.96" evidence="1"/>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX33852.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012203138.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A9BUE9"/>
    <dbReference type="SMR" id="A9BUE9"/>
    <dbReference type="STRING" id="398578.Daci_1207"/>
    <dbReference type="PRIDE" id="A9BUE9"/>
    <dbReference type="EnsemblBacteria" id="ABX33852">
        <property type="protein sequence ID" value="ABX33852"/>
        <property type="gene ID" value="Daci_1207"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_1207"/>
    <dbReference type="eggNOG" id="COG1490">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_076901_1_1_4"/>
    <dbReference type="OMA" id="GVFQAHM"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051499">
        <property type="term" value="F:D-aminoacyl-tRNA deacylase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0106026">
        <property type="term" value="F:Gly-tRNA(Ala) hydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043908">
        <property type="term" value="F:Ser(Gly)-tRNA(Ala) hydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000049">
        <property type="term" value="F:tRNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0019478">
        <property type="term" value="P:D-amino acid catabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd00563">
        <property type="entry name" value="Dtyr_deacylase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.50.80.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00518">
        <property type="entry name" value="Deacylase_Dtd"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003732">
        <property type="entry name" value="Daa-tRNA_deacyls_DTD"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023509">
        <property type="entry name" value="DTD-like_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10472">
        <property type="entry name" value="PTHR10472"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02580">
        <property type="entry name" value="Tyr_Deacylase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF69500">
        <property type="entry name" value="SSF69500"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00256">
        <property type="entry name" value="TIGR00256"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword id="KW-0963">Cytoplasm</keyword>
    <keyword id="KW-0378">Hydrolase</keyword>
    <keyword id="KW-1185">Reference proteome</keyword>
    <keyword id="KW-0694">RNA-binding</keyword>
    <keyword id="KW-0820">tRNA-binding</keyword>
    <feature type="chain" id="PRO_1000127515" description="D-aminoacyl-tRNA deacylase">
        <location>
            <begin position="1"/>
            <end position="156"/>
        </location>
    </feature>
    <feature type="short sequence motif" description="Gly-cisPro motif, important for rejection of L-amino acids" evidence="1">
        <location>
            <begin position="142"/>
            <end position="143"/>
        </location>
    </feature>
    <evidence type="ECO:0000255" key="1">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00518"/>
        </source>
    </evidence>
    <sequence length="156" mass="16380" checksum="3933632FF4F5BEDD" modified="2008-01-15" version="1">MISILQRVKQARVEIDGQVAGSIGPGLLALVCAERGDTEAEADKLLAKMLKLRIFADDAGKMNRSVQDLDGQGACGGLLIVSQFTLAADTGGGNRPSFTRAAPPAEGERLYDYIVQRARALHPEVATGRFGADMQVHLLNDGPVTIPLSIAPATAA</sequence>
</entry>
<entry dataset="Swiss-Prot" created="2009-03-24" modified="2022-08-03" version="84" xmlns="http://uniprot.org/uniprot">
    <accession>A9BUG8</accession>
    <name>RUVB_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Holliday junction ATP-dependent DNA helicase RuvB</fullName>
            <ecNumber evidence="1">3.6.4.12</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="1" type="primary">ruvB</name>
        <name type="ordered locus">Daci_1227</name>
    </gene>
    <organism>
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference key="1">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain>DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="1">The RuvA-RuvB complex in the presence of ATP renatures cruciform structure in supercoiled DNA with palindromic sequence, indicating that it may promote strand exchange reactions in homologous recombination. RuvAB is a helicase that mediates the Holliday junction migration by localized denaturation and reannealing.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>ATP + H2O = ADP + H(+) + phosphate</text>
            <dbReference type="Rhea" id="RHEA:13065"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:43474"/>
            <dbReference type="ChEBI" id="CHEBI:456216"/>
            <dbReference type="EC" id="3.6.4.12"/>
        </reaction>
    </comment>
    <comment type="subunit">
        <text evidence="1">Forms a complex with RuvA.</text>
    </comment>
    <comment type="similarity">
        <text evidence="1">Belongs to the RuvB family.</text>
    </comment>
    <dbReference type="EC" id="3.6.4.12" evidence="1"/>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX33871.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012203157.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A9BUG8"/>
    <dbReference type="SMR" id="A9BUG8"/>
    <dbReference type="STRING" id="398578.Daci_1227"/>
    <dbReference type="PRIDE" id="A9BUG8"/>
    <dbReference type="EnsemblBacteria" id="ABX33871">
        <property type="protein sequence ID" value="ABX33871"/>
        <property type="gene ID" value="Daci_1227"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_1227"/>
    <dbReference type="eggNOG" id="COG2255">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_055599_1_0_4"/>
    <dbReference type="OMA" id="IHRMSRP"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016887">
        <property type="term" value="F:ATP hydrolysis activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="RHEA"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009378">
        <property type="term" value="F:four-way junction helicase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006310">
        <property type="term" value="P:DNA recombination"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006281">
        <property type="term" value="P:DNA repair"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009432">
        <property type="term" value="P:SOS response"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00016">
        <property type="entry name" value="DNA_helic_RuvB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003593">
        <property type="entry name" value="AAA+_ATPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041445">
        <property type="entry name" value="AAA_lid_4"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004605">
        <property type="entry name" value="DNA_helicase_Holl-junc_RuvB"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008824">
        <property type="entry name" value="RuvB-like_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008823">
        <property type="entry name" value="RuvB_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036390">
        <property type="entry name" value="WH_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR42848">
        <property type="entry name" value="PTHR42848"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF17864">
        <property type="entry name" value="AAA_lid_4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF05491">
        <property type="entry name" value="RuvB_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF05496">
        <property type="entry name" value="RuvB_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00382">
        <property type="entry name" value="AAA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46785">
        <property type="entry name" value="SSF46785"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00635">
        <property type="entry name" value="ruvB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword id="KW-0067">ATP-binding</keyword>
    <keyword id="KW-0227">DNA damage</keyword>
    <keyword id="KW-0233">DNA recombination</keyword>
    <keyword id="KW-0234">DNA repair</keyword>
    <keyword id="KW-0347">Helicase</keyword>
    <keyword id="KW-0378">Hydrolase</keyword>
    <keyword id="KW-0547">Nucleotide-binding</keyword>
    <keyword id="KW-1185">Reference proteome</keyword>
    <keyword id="KW-0742">SOS response</keyword>
    <feature type="chain" id="PRO_1000089639" description="Holliday junction ATP-dependent DNA helicase RuvB">
        <location>
            <begin position="1"/>
            <end position="361"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="1"/>
            <end position="25"/>
        </location>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <begin position="85"/>
            <end position="92"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000255" key="1">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00016"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <sequence length="361" mass="39541" checksum="17115B3D81FF9776" modified="2008-01-15" version="1">MSIHTDDFGQGGFAQGGFPPDKAPDKLRMISAAPVSRGEEAMERALRPKLLQEYVGQAKAREQLEIFIGAARKRNEALDHVLLFGPPGLGKTTLSHIIAAELGVNLRQTSGPVLEKPKDLAALLTNLEANDVLFIDEIHRLSPVVEEILYPALEDYQIDIMIGEGPAARSIKLDLQPFTLVGATTRAGMLTNPLRDRFGIVARLEFYTAEELARIVRRSAGLLNAPIDDEGAFEIARRSRGTPRIANRLLRRVRDYADVRGDGSITRELADRALAMLDVDPQGFDIMDRKLLEAVVHRFDGGPVGLDNIAASIGEEAGTIEDVIEPYLIQQGFLQRTPRGRMATQAAYRHLGLPVPGDDAS</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="67" xmlns="http://uniprot.org/uniprot">
    <accession>A9BUU1</accession>
    <name>A9BUU1_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="8">Acetate--CoA ligase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="8" type="ordered locus">Daci_1761</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="9" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX34403.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012203688.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_1761"/>
    <dbReference type="PRIDE" id="A9BUU1"/>
    <dbReference type="EnsemblBacteria" id="ABX34403">
        <property type="protein sequence ID" value="ABX34403"/>
        <property type="gene ID" value="Daci_1761"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_1761"/>
    <dbReference type="eggNOG" id="COG0365">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_000022_3_6_4"/>
    <dbReference type="OMA" id="SPDIWEW"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003987">
        <property type="term" value="F:acetate-CoA ligase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016208">
        <property type="term" value="F:AMP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0019427">
        <property type="term" value="P:acetyl-CoA biosynthetic process from acetate"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.300.30">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.12780">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011904">
        <property type="entry name" value="Ac_CoA_lig"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR032387">
        <property type="entry name" value="ACAS_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025110">
        <property type="entry name" value="AMP-bd_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045851">
        <property type="entry name" value="AMP-bd_C_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020845">
        <property type="entry name" value="AMP-binding_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000873">
        <property type="entry name" value="AMP-dep_Synth/Lig"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR042099">
        <property type="entry name" value="ANL_N_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF16177">
        <property type="entry name" value="ACAS_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00501">
        <property type="entry name" value="AMP-binding"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13193">
        <property type="entry name" value="AMP-binding_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR02188">
        <property type="entry name" value="Ac_CoA_lig_AcsA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00455">
        <property type="entry name" value="AMP_BINDING"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-0007">Acetylation</keyword>
    <keyword evidence="3" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="1 8" id="KW-0436">Ligase</keyword>
    <keyword evidence="2" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="ACAS_N" evidence="7">
        <location>
            <begin position="31"/>
            <end position="86"/>
        </location>
    </feature>
    <feature type="domain" description="AMP-binding" evidence="5">
        <location>
            <begin position="96"/>
            <end position="534"/>
        </location>
    </feature>
    <feature type="domain" description="AMP-binding_C" evidence="6">
        <location>
            <begin position="543"/>
            <end position="625"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022598"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022990"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="Pfam" id="PF00501"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="Pfam" id="PF13193"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="Pfam" id="PF16177"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="ABX34403.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="660" mass="71752" checksum="4514B32256BBB5CD" modified="2008-01-15" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="64" xmlns="http://uniprot.org/uniprot">
    <accession>A9BUU2</accession>
    <name>A9BUU2_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="3">(Acyl-carrier protein) S-malonyltransferase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Daci_1762</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="4" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX34404.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012203689.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_1762"/>
    <dbReference type="PRIDE" id="A9BUU2"/>
    <dbReference type="EnsemblBacteria" id="ABX34404">
        <property type="protein sequence ID" value="ABX34404"/>
        <property type="gene ID" value="Daci_1762"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_1762"/>
    <dbReference type="eggNOG" id="COG0331">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_030558_4_0_4"/>
    <dbReference type="OMA" id="PVEWAAC"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016740">
        <property type="term" value="F:transferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.366.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001227">
        <property type="entry name" value="Ac_transferase_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014043">
        <property type="entry name" value="Acyl_transferase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016035">
        <property type="entry name" value="Acyl_Trfase/lysoPLipase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016036">
        <property type="entry name" value="Malonyl_transacylase_ACP-bd"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00698">
        <property type="entry name" value="Acyl_transf_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00827">
        <property type="entry name" value="PKS_AT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52151">
        <property type="entry name" value="SSF52151"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55048">
        <property type="entry name" value="SSF55048"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1 3" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="PKS_AT" evidence="2">
        <location>
            <begin position="6"/>
            <end position="300"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="SMART" id="SM00827"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ABX34404.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="303" mass="31813" checksum="AB31DEF6B5CDBE73" modified="2008-01-15" version="1">MSFALLFSGQGTQHPAMLPWLADDAWTQAVCEQLQVAHWRDRLADAPWAESNAVAQPLLAGLAMAAWMQLSPQLPAPSAVAGYSVGELPAFGAAGALDACDIVALAARRAAAMDRCSQQMPGGGLLAVSGLPPARMAALLETTGLAVAIRNGPENLILGGPHAALEQAQALAARQGAHATRLRVQVASHTPWMRQAAQAFAKDLGQVAVHAPAVALFSNTARRVRDAAGARTALSEQIAGTVHWDDCMDSVAARQVRCVLEIGPGQALARLWNQRHPDIPARSCDDFRSAAAIASWIGRHCGD</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-01-19" version="48" xmlns="http://uniprot.org/uniprot">
    <accession>A9BUY7</accession>
    <name>A9BUY7_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="5">UPF0391 membrane protein Daci_1807</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="7" type="ordered locus">Daci_1807</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="8" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="5">Belongs to the UPF0391 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="5">Lacks conserved residue(s) required for the propagation of feature annotation.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX34449.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_1807"/>
    <dbReference type="EnsemblBacteria" id="ABX34449">
        <property type="protein sequence ID" value="ABX34449"/>
        <property type="gene ID" value="Daci_1807"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_1807"/>
    <dbReference type="eggNOG" id="COG5487">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_1988985_0_0_4"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01361">
        <property type="entry name" value="UPF0391"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009760">
        <property type="entry name" value="DUF1328"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07043">
        <property type="entry name" value="DUF1328"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="1 5" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="4 5" id="KW-0472">Membrane</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 5" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="3 5" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="76"/>
            <end position="99"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="105"/>
            <end position="123"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="6">
        <location>
            <begin position="1"/>
            <end position="43"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Pro residues" evidence="6">
        <location>
            <begin position="20"/>
            <end position="36"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01361"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="ABX34449.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="125" mass="13713" checksum="78CD9CBDA895522D" modified="2008-01-15" version="1">MRAPEWLQPAAAASPVQPEHSYTTPPPNPDAMPRRPPSDTPLAAQYSRTHANSTWPIRPVPFLGNEQPKEFYMLHYAIVFFVIALVAAIFGFGGIAAGAVGIAKILFYIFVIMAVVTFVMSLIKK</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="46" xmlns="http://uniprot.org/uniprot">
    <accession>A9BV77</accession>
    <name>A9BV77_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_2101</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX34741.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012204024.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="PRIDE" id="A9BV77"/>
    <dbReference type="EnsemblBacteria" id="ABX34741">
        <property type="protein sequence ID" value="ABX34741"/>
        <property type="gene ID" value="Daci_2101"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_2101"/>
    <dbReference type="HOGENOM" id="CLU_201057_0_0_4"/>
    <dbReference type="OMA" id="YAFKFIR"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008020">
        <property type="entry name" value="G8P"/>
    </dbReference>
    <dbReference type="Pfam" id="PF05356">
        <property type="entry name" value="Phage_Coat_B"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="12"/>
            <end position="32"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="52"/>
            <end position="69"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX34741.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="73" mass="7566" checksum="1132AE722E83E38A" modified="2008-01-15" version="1">MFEETFSVARKYGARVAAVPALAVVAMGNAHAELPTEVTTALGSLSTDALKVAGIVLAAIVAVYAFKFIRKGL</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2021-06-02" version="32" xmlns="http://uniprot.org/uniprot">
    <accession>A9BVL1</accession>
    <name>A9BVL1_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Daci_2440</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="2" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX35078.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012204360.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="ABX35078">
        <property type="protein sequence ID" value="ABX35078"/>
        <property type="gene ID" value="Daci_2440"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_2440"/>
    <dbReference type="HOGENOM" id="CLU_2435942_0_0_4"/>
    <dbReference type="OMA" id="AEHFTQV"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ABX35078.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="90" mass="9658" checksum="0D5BA1F89A3AEE2D" modified="2008-01-15" version="1">MTPRPPPSAEHFTQVVTEVDRLVQQGCAEISALSRMALLWLETPETSNRLDVLASALRTIRNSADMLASETSGEVVAVGCSHHVKSSTAP</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="83" xmlns="http://uniprot.org/uniprot">
    <accession>A9BVM4</accession>
    <name>A9BVM4_DELAS</name>
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        <submittedName>
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        </submittedName>
    </protein>
    <gene>
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    </gene>
    <organism evidence="13 14">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
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        <lineage>
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            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
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            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
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    <reference evidence="13 14" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
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                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
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            <dbReference type="PubMed" id="15240283"/>
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        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
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                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="14">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
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        <subcellularLocation>
            <location evidence="9">Cell outer membrane</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="1 9">Belongs to the TonB-dependent receptor family.</text>
    </comment>
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        <property type="protein sequence ID" value="ABX35091.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
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        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_2453"/>
    <dbReference type="PRIDE" id="A9BVM4"/>
    <dbReference type="EnsemblBacteria" id="ABX35091">
        <property type="protein sequence ID" value="ABX35091"/>
        <property type="gene ID" value="Daci_2453"/>
    </dbReference>
    <dbReference type="GeneID" id="60686819"/>
    <dbReference type="KEGG" id="dac:Daci_2453"/>
    <dbReference type="eggNOG" id="COG4772">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_008287_17_1_4"/>
    <dbReference type="OMA" id="QVSFNAN"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009279">
        <property type="term" value="C:cell outer membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015344">
        <property type="term" value="F:siderophore uptake transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0038023">
        <property type="term" value="F:signaling receptor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0055072">
        <property type="term" value="P:iron ion homeostasis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.170.130.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.170.20">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012910">
        <property type="entry name" value="Plug_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037066">
        <property type="entry name" value="Plug_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000531">
        <property type="entry name" value="TonB-dep_rcpt_b-brl"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036942">
        <property type="entry name" value="TonB_rcpt_b-brl_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010917">
        <property type="entry name" value="TonB_rcpt_CS"/>
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    <dbReference type="InterPro" id="IPR010105">
        <property type="entry name" value="TonB_sidphr_rcpt"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07715">
        <property type="entry name" value="Plug"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00593">
        <property type="entry name" value="TonB_dep_Rec"/>
        <property type="match status" value="1"/>
    </dbReference>
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        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01156">
        <property type="entry name" value="TONB_DEPENDENT_REC_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
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    <keyword evidence="2" id="KW-0406">Ion transport</keyword>
    <keyword evidence="4" id="KW-0408">Iron</keyword>
    <keyword evidence="2" id="KW-0410">Iron transport</keyword>
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        <location>
            <begin position="1"/>
            <end position="28"/>
        </location>
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            <begin position="29"/>
            <end position="720"/>
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        <location>
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            <end position="716"/>
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    </evidence>
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        <source>
            <dbReference type="ARBA" id="ARBA00023077"/>
        </source>
    </evidence>
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        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
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        <source>
            <dbReference type="ARBA" id="ARBA00023170"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00023237"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="RuleBase" id="RU003357"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="11">
        <source>
            <dbReference type="Pfam" id="PF00593"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="12">
        <source>
            <dbReference type="Pfam" id="PF07715"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="13">
        <source>
            <dbReference type="EMBL" id="ABX35091.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="14">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="720" mass="77807" checksum="AE2F577B653DA2C8" modified="2008-01-15" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2021-06-02" version="41" xmlns="http://uniprot.org/uniprot">
    <accession>A9BVX2</accession>
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        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
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            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
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            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
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            <strain evidence="3">DSM 14801 / SPH-1</strain>
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    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX35485.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
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        <property type="protein sequence ID" value="ABX35485"/>
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            <end position="61"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
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        </location>
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    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
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            <end position="161"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="181"/>
            <end position="201"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX35485.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="221" mass="23909" checksum="1C506A4D4E04D593" modified="2008-01-15" version="1">MFLEASIALLALATALWLRPWRMLAGRPAPGGPQDRMASPLVTPLLGVLVLLPWIWALPTLHRMPLQLQWSSAPLVVLMLGWPLAVPLLLIVGGLAALLSPALGWGDALGISVWQGIVPATLAMLWGAALRRWLPHQIFVYILARGFAGTVLCVFISALLAQAAGHALPGVNEDLSRIARWLMAWGDAVVTGMVTAIFVVFRPQWLATWSDAIYLRQPPAA</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2020-10-07" version="27" xmlns="http://uniprot.org/uniprot">
    <accession>A9BW16</accession>
    <name>A9BW16_DELAS</name>
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        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
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    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
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        <lineage>
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    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
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                <person name="Fischer K."/>
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            <dbReference type="PubMed" id="15240283"/>
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        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
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                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX35832.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_3194"/>
    <dbReference type="EnsemblBacteria" id="ABX35832">
        <property type="protein sequence ID" value="ABX35832"/>
        <property type="gene ID" value="Daci_3194"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_3194"/>
    <dbReference type="HOGENOM" id="CLU_1934597_0_0_4"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="46"/>
            <end position="64"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="84"/>
            <end position="115"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX35832.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="130" mass="14188" checksum="424B2DB5BC5689A3" modified="2008-01-15" version="1">MKEELQRQLAQVIAAIHGQASSTGDFWIERLPSVAQQYIAYGRAQAVIDIIMPTAGLLVAAWLIKHLLVHSGIALDFKAHRAFLSLLTGVVAAGLGIYSVIAFVTATRLAALVWFAPKVWLLRELANIIK</sequence>
</entry>
<entry dataset="Swiss-Prot" created="2009-09-22" modified="2022-08-03" version="78" xmlns="http://uniprot.org/uniprot">
    <accession>A9BWI4</accession>
    <name>LPXK_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Tetraacyldisaccharide 4'-kinase</fullName>
            <ecNumber evidence="1">2.7.1.130</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="1">Lipid A 4'-kinase</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="1" type="primary">lpxK</name>
        <name type="ordered locus">Daci_3570</name>
    </gene>
    <organism>
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference key="1">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain>DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="1">Transfers the gamma-phosphate of ATP to the 4'-position of a tetraacyldisaccharide 1-phosphate intermediate (termed DS-1-P) to form tetraacyldisaccharide 1,4'-bis-phosphate (lipid IVA).</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>ATP + {2-N,3-O-bis[(3R)-3-hydroxytetradecanoyl]-beta-D-glucosaminyl}-(1-&gt;6)-{2-N,3-O-bis[(3R)-3-hydroxytetradecanoyl]-alpha-D-glucosaminyl phosphate} = ADP + {2-N,3-O-bis[(3R)-3-hydroxytetradecanoyl]-4-O-phospho-beta-D-glucosaminyl}-(1-&gt;6)-{2-N,3-O-bis[(3R)-3-hydroxytetradecanoyl]-alpha-D-glucosaminyl phosphate}.</text>
            <dbReference type="EC" id="2.7.1.130"/>
        </reaction>
    </comment>
    <comment type="pathway">
        <text evidence="1">Glycolipid biosynthesis; lipid IV(A) biosynthesis; lipid IV(A) from (3R)-3-hydroxytetradecanoyl-[acyl-carrier-protein] and UDP-N-acetyl-alpha-D-glucosamine: step 6/6.</text>
    </comment>
    <comment type="similarity">
        <text evidence="1">Belongs to the LpxK family.</text>
    </comment>
    <dbReference type="EC" id="2.7.1.130" evidence="1"/>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX36204.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012205404.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A9BWI4"/>
    <dbReference type="SMR" id="A9BWI4"/>
    <dbReference type="STRING" id="398578.Daci_3570"/>
    <dbReference type="PRIDE" id="A9BWI4"/>
    <dbReference type="EnsemblBacteria" id="ABX36204">
        <property type="protein sequence ID" value="ABX36204"/>
        <property type="gene ID" value="Daci_3570"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_3570"/>
    <dbReference type="eggNOG" id="COG1663">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_038816_2_0_4"/>
    <dbReference type="OMA" id="MDDGFQN"/>
    <dbReference type="UniPathway" id="UPA00359">
        <property type="reaction ID" value="UER00482"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009029">
        <property type="term" value="F:tetraacyldisaccharide 4'-kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009245">
        <property type="term" value="P:lipid A biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016310">
        <property type="term" value="P:phosphorylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00409">
        <property type="entry name" value="LpxK"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003758">
        <property type="entry name" value="LpxK"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR42724">
        <property type="entry name" value="PTHR42724"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02606">
        <property type="entry name" value="LpxK"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00682">
        <property type="entry name" value="lpxK"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword id="KW-0067">ATP-binding</keyword>
    <keyword id="KW-0418">Kinase</keyword>
    <keyword id="KW-0441">Lipid A biosynthesis</keyword>
    <keyword id="KW-0444">Lipid biosynthesis</keyword>
    <keyword id="KW-0443">Lipid metabolism</keyword>
    <keyword id="KW-0547">Nucleotide-binding</keyword>
    <keyword id="KW-1185">Reference proteome</keyword>
    <keyword id="KW-0808">Transferase</keyword>
    <feature type="chain" id="PRO_1000205965" description="Tetraacyldisaccharide 4'-kinase">
        <location>
            <begin position="1"/>
            <end position="338"/>
        </location>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <begin position="66"/>
            <end position="73"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000255" key="1">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00409"/>
        </source>
    </evidence>
    <sequence length="338" mass="36387" checksum="3315FAD9C2CB4DC0" modified="2008-01-15" version="1">MPGNGPAPAARGLRAAWRHRGPLACALLPLSLLYRALLGLHRLPYALGFRRAGQAGIPVIVVGNVIAGGAGKTPVTLALARHLRDSGWSPGIVSRGYGRSTDDCREATPESAPADVGDEPALLARASGVPVFVARKRIEAVQALRARHSQVDVVISDDGLQHLALARDIELCVFNDDGIGNGWLLPAGPLREPWPRPVTAVLHAGACPPTDAPAFAMQRQLAAEGVNAHGERIPLAALRGRPVEAVAAVARPEGFFSMLASEQDLALEHAQALPDHYNFESFQRLGRNEDPLVCTEKDAVKLWRTHPQAWSVALQLQLPPDFWALLDQRLQALRRPRA</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2021-09-29" version="63" xmlns="http://uniprot.org/uniprot">
    <accession>A9BWJ1</accession>
    <name>A9BWJ1_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="7">Major facilitator superfamily MFS_1</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ordered locus">Daci_3577</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="8" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX36211.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012205411.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_3577"/>
    <dbReference type="EnsemblBacteria" id="ABX36211">
        <property type="protein sequence ID" value="ABX36211"/>
        <property type="gene ID" value="Daci_3577"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_3577"/>
    <dbReference type="eggNOG" id="COG2814">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_033532_0_1_4"/>
    <dbReference type="OMA" id="WFPEAGP"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0022857">
        <property type="term" value="F:transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.1250.20">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011701">
        <property type="entry name" value="MFS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020846">
        <property type="entry name" value="MFS_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036259">
        <property type="entry name" value="MFS_trans_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07690">
        <property type="entry name" value="MFS_1"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF103473">
        <property type="entry name" value="SSF103473"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50850">
        <property type="entry name" value="MFS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4 5" id="KW-0472">Membrane</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 5" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="3 5" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="12"/>
            <end position="39"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="45"/>
            <end position="67"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="79"/>
            <end position="101"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="107"/>
            <end position="126"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="174"/>
            <end position="193"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="214"/>
            <end position="241"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="247"/>
            <end position="268"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="280"/>
            <end position="297"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="303"/>
            <end position="325"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="337"/>
            <end position="359"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="365"/>
            <end position="387"/>
        </location>
    </feature>
    <feature type="domain" description="MFS" evidence="6">
        <location>
            <begin position="214"/>
            <end position="406"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="PROSITE" id="PS50850"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="ABX36211.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="406" mass="42420" checksum="B25978D624C90523" modified="2008-01-15" version="1">MFHAYRQLFTRPGTAAFVLAGLLARLPLSMTGIGLITMLSQQRGAYTLAGAVAACFALSIAVLAPRISALVDRHGQRKVLPWAAAVSAAAMFALLACAHWQGPDWLLLVLAALVGALPSMPAMVRARWTVLLRGTPQLQTAYALEAVLDDVCFIVGPPLSVGLSMVLFPEAGPLAASLLLLVGVALFVAQRRTEPPVDTSQQRTRQQSLARHPVVRTLALFMLAQGIIVGTIDVASVAFATQQGQPAAASIVLSFYALGSCVMGLVFGTLRLKAPLHRQIAWVGASVCITAVPLLLATNVFTLTLAVLLAGITFGPTITVAMGLVEQQVPHQRLTEGMTWLLTGIAMGVALGAAAAGWATDLWGARISFVVALLAGVAMWALGVLAARQARAKESPPAEDAAAACT</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="63" xmlns="http://uniprot.org/uniprot">
    <accession>A9BWM8</accession>
    <name>A9BWM8_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Alpha/beta hydrolase fold-3 domain protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Daci_3924</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="4" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX36555.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012205749.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_3924"/>
    <dbReference type="PRIDE" id="A9BWM8"/>
    <dbReference type="EnsemblBacteria" id="ABX36555">
        <property type="protein sequence ID" value="ABX36555"/>
        <property type="gene ID" value="Daci_3924"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_3924"/>
    <dbReference type="eggNOG" id="COG0657">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_012494_6_4_4"/>
    <dbReference type="OMA" id="RYISPGM"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016787">
        <property type="term" value="F:hydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.1820">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029058">
        <property type="entry name" value="AB_hydrolase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013094">
        <property type="entry name" value="AB_hydrolase_3"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR033140">
        <property type="entry name" value="Lipase_GDXG_put_SER_AS"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07859">
        <property type="entry name" value="Abhydrolase_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53474">
        <property type="entry name" value="SSF53474"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01174">
        <property type="entry name" value="LIPASE_GDXG_SER"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Abhydrolase_3" evidence="2">
        <location>
            <begin position="85"/>
            <end position="297"/>
        </location>
    </feature>
    <feature type="active site" evidence="1">
        <location>
            <position position="163"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU10038"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF07859"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ABX36555.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="326" mass="34215" checksum="559385A0C3E9912B" modified="2008-01-15" version="1">MGLDADIARYLAELAQATQAVAPPTPPTLAALREATDAGLRALHGPAEAMARTEDFTLPARDGAPLRVRIYRPLASDTPTPQPALVFAHGGGWCLGSLEVYDNPCRALAAATGAVVVSVDYRLAPEHRFPGPLHDFCDAIAWTFEQADALGLDSRRIGVAGDSAGGNLAAAACLLAQEKQGWGAADAPAIAHQLLLYPALDAAMDSPSFQQFGEGHYLTRAAMEYCYGAYLGDAAPGRHELVSPLRAEHLAGLPQATVISCEYDPLRDEAEAYAQRLAQAGVAVQAVRLPGMVHACMHMLGMAPASRRLFDEAGAAVRQALGTAIG</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="57" xmlns="http://uniprot.org/uniprot">
    <accession>A9BWN2</accession>
    <name>A9BWN2_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Acyl-CoA dehydrogenase, putative</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_3928</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX36559.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_3928"/>
    <dbReference type="PRIDE" id="A9BWN2"/>
    <dbReference type="EnsemblBacteria" id="ABX36559">
        <property type="protein sequence ID" value="ABX36559"/>
        <property type="gene ID" value="Daci_3928"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_3928"/>
    <dbReference type="eggNOG" id="COG1960">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_063432_0_0_4"/>
    <dbReference type="OMA" id="ISHEIMF"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0050660">
        <property type="term" value="F:flavin adenine dinucleotide binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016627">
        <property type="term" value="F:oxidoreductase activity, acting on the CH-CH group of donors"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.540.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.110.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR046373">
        <property type="entry name" value="Acyl-CoA_Oxase/DH_mid-dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013786">
        <property type="entry name" value="AcylCoA_DH/ox_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037069">
        <property type="entry name" value="AcylCoA_DH/ox_N_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009100">
        <property type="entry name" value="AcylCoA_DH/oxidase_NM_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02771">
        <property type="entry name" value="Acyl-CoA_dh_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56645">
        <property type="entry name" value="SSF56645"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Acyl-CoA_dh_N" evidence="1">
        <location>
            <begin position="22"/>
            <end position="113"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF02771"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX36559.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="366" mass="38328" checksum="E30578AC5E3F560F" modified="2008-01-15" version="1">MTSHIPDFPLLTGADRQWLDARAQALDAGNGEATAAVVPYLAEAGLLGHGLADALGGQGGSAGDAIEAIAQVATHSMSAAFAFWGQRVLIEMLANTGNAALRERWLPALLAGEAAGASGLSNIMKFLSGLEALNIRATAREGGGWLLNGSVPWCTNLRGPRFLAAIAVARDDGAPPMIVALPSDRPGLERSPDLELIALRGTNTAALQLKDVAITEGDLLAERAGGFLPRVRPAFLGMQCGLSIGLARAACAQAASRMGQGGHVLQQPLDDTRSHLEQAVAALKAGVEAGDFVEAPERLFALRLALHDCVQQAMQLELQTAGGRAYSLDADDGFARRWRESAFIPIVTPSVIQLRAELQKLQKLGA</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2020-10-07" version="27" xmlns="http://uniprot.org/uniprot">
    <accession>A9BWN6</accession>
    <name>A9BWN6_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Daci_3932</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="2" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX36563.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_3932"/>
    <dbReference type="EnsemblBacteria" id="ABX36563">
        <property type="protein sequence ID" value="ABX36563"/>
        <property type="gene ID" value="Daci_3932"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_3932"/>
    <dbReference type="HOGENOM" id="CLU_2537033_0_0_4"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ABX36563.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="83" mass="9135" checksum="86D33F2A5BA8D089" modified="2008-01-15" version="1">MPSRAWLQDWAGAVMQGFLPFVHCGGAHLSGLGAGFRIGWYRYVFVDISDLYGEFCEQKATEFAGLCRSLDGRQLAVMGKSEA</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="58" xmlns="http://uniprot.org/uniprot">
    <accession>A9BWU6</accession>
    <name>A9BWU6_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">2-hydroxyglutarate dehydrogenase</fullName>
            <ecNumber evidence="2">1.1.99.2</ecNumber>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_3992</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EC" id="1.1.99.2" evidence="2"/>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX36623.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012205817.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_3992"/>
    <dbReference type="PRIDE" id="A9BWU6"/>
    <dbReference type="EnsemblBacteria" id="ABX36623">
        <property type="protein sequence ID" value="ABX36623"/>
        <property type="gene ID" value="Daci_3992"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_3992"/>
    <dbReference type="eggNOG" id="COG0579">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_024775_1_1_4"/>
    <dbReference type="OMA" id="WGVSKAN"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0047545">
        <property type="term" value="F:2-hydroxyglutarate dehydrogenase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.50.50.60">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006076">
        <property type="entry name" value="FAD-dep_OxRdtase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036188">
        <property type="entry name" value="FAD/NAD-bd_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01266">
        <property type="entry name" value="DAO"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51905">
        <property type="entry name" value="SSF51905"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="DAO" evidence="1">
        <location>
            <begin position="6"/>
            <end position="364"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF01266"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX36623.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="366" mass="38359" checksum="EBDC8DBE55DDF612" modified="2008-01-15" version="1">MSEQVDCVVVGAGVVGLAVARALALQGREVMVLEAAEAIGTGTSSRNSEVIHAGIYYPEGSLKARLCVEGRQRLYAYCGERGIAHQRCGKLIVATDAAQRGQLQAIARKAEANGVHDLRWLEGAEARAMEPALHCAAALHSPSTGIIDSHALMLALQGDLENAGGMVVCHAEVQEAAIRPGGVWLRTADGTELTARTLVNAAGLHAPLLAARLQGFPQQFVPQAFYAKGNYFTLSGRVPFSRLIYPVPEAAGLGVHLTLDMGGQAKFGPDVQWVESPGDLQVDPVRADAFYAEIRRYWPGLADGALVPGYAGIRPKISGPGEAAADFEIQGPQTHGVAGVVQLLGIESPGLTSCLAIGAHVAQLLA</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="89" xmlns="http://uniprot.org/uniprot">
    <accession>A9BX56</accession>
    <name>A9BX56_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="10">Ubiquinol-cytochrome c reductase iron-sulfur subunit</fullName>
            <ecNumber evidence="10">7.1.1.8</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="13" type="ordered locus">Daci_5503</name>
    </gene>
    <organism evidence="13 14">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="13 14" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="14">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="14" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="14">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="10">
            <text>a quinol + 2 Fe(III)-[cytochrome c](out) = a quinone + 2 Fe(II)-[cytochrome c](out) + 2 H(+)(out)</text>
            <dbReference type="Rhea" id="RHEA:11484"/>
            <dbReference type="Rhea" id="RHEA-COMP:10350"/>
            <dbReference type="Rhea" id="RHEA-COMP:14399"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:24646"/>
            <dbReference type="ChEBI" id="CHEBI:29033"/>
            <dbReference type="ChEBI" id="CHEBI:29034"/>
            <dbReference type="ChEBI" id="CHEBI:132124"/>
            <dbReference type="EC" id="7.1.1.8"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="10">
            <name>2Fe-2S cluster</name>
            <dbReference type="ChEBI" id="CHEBI:49601"/>
        </cofactor>
        <text evidence="10">Binds 1 [2Fe-2S] cluster per subunit.</text>
    </comment>
    <comment type="subunit">
        <text evidence="11">The main subunits of complex b-c1 are: cytochrome b, cytochrome c1 and the Rieske protein.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Single-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="miscellaneous">
        <text evidence="10">The Rieske protein is a high potential 2Fe-2S protein.</text>
    </comment>
    <dbReference type="EC" id="7.1.1.8" evidence="10"/>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX38132.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012207301.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_5503"/>
    <dbReference type="PRIDE" id="A9BX56"/>
    <dbReference type="EnsemblBacteria" id="ABX38132">
        <property type="protein sequence ID" value="ABX38132"/>
        <property type="gene ID" value="Daci_5503"/>
    </dbReference>
    <dbReference type="GeneID" id="60689857"/>
    <dbReference type="KEGG" id="dac:Daci_5503"/>
    <dbReference type="eggNOG" id="COG0723">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_055690_0_2_4"/>
    <dbReference type="OMA" id="KRTWLIA"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051537">
        <property type="term" value="F:2 iron, 2 sulfur cluster binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008121">
        <property type="term" value="F:ubiquinol-cytochrome-c reductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.102.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017941">
        <property type="entry name" value="Rieske_2Fe-2S"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036922">
        <property type="entry name" value="Rieske_2Fe-2S_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014349">
        <property type="entry name" value="Rieske_Fe-S_prot"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005805">
        <property type="entry name" value="Rieske_Fe-S_prot_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006311">
        <property type="entry name" value="TAT_signal"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006317">
        <property type="entry name" value="Ubiquinol_cyt_c_Rdtase_Fe-S-su"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10134">
        <property type="entry name" value="PTHR10134"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00355">
        <property type="entry name" value="Rieske"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00162">
        <property type="entry name" value="RIESKE"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50022">
        <property type="entry name" value="SSF50022"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01416">
        <property type="entry name" value="Rieske_proteo"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51296">
        <property type="entry name" value="RIESKE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51318">
        <property type="entry name" value="TAT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-0001">2Fe-2S</keyword>
    <keyword evidence="9" id="KW-1015">Disulfide bond</keyword>
    <keyword evidence="10" id="KW-0249">Electron transport</keyword>
    <keyword evidence="6" id="KW-0408">Iron</keyword>
    <keyword evidence="7" id="KW-0411">Iron-sulfur</keyword>
    <keyword evidence="8 10" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="13" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="14" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 10" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="5 10" id="KW-1133">Transmembrane helix</keyword>
    <keyword evidence="10" id="KW-0813">Transport</keyword>
    <feature type="transmembrane region" description="Helical" evidence="10">
        <location>
            <begin position="12"/>
            <end position="33"/>
        </location>
    </feature>
    <feature type="domain" description="Rieske" evidence="12">
        <location>
            <begin position="113"/>
            <end position="192"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004167"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022714"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023004"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023014"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00023157"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="RuleBase" id="RU004494"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="RuleBase" id="RU004497"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="12">
        <source>
            <dbReference type="PROSITE" id="PS51296"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="13">
        <source>
            <dbReference type="EMBL" id="ABX38132.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="14">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="198" mass="21424" checksum="3CE3254B171482A4" modified="2008-01-15" version="1">MSDTPIDSSKRTWIITSACAGAVGGVATAVPFVSTFQPSEKAKAAGAAVEVDISALKDGEKLTVEWRGKPVWIIKRTPEQIKELPELDSQLADPQSKRHPEEFTPPYAMNEARSIKPEVLVVVGICTHLGCSPSDKFQPGAQPSLPNDWKGGFLCPCHGSTFDMAGRVFKNKPAPDNLQVPPHMYLSETKLLIGEDKA</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="28" xmlns="http://uniprot.org/uniprot">
    <accession>A9BX61</accession>
    <name>A9BX61_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Daci_5508</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="2" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX38137.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="PRIDE" id="A9BX61"/>
    <dbReference type="EnsemblBacteria" id="ABX38137">
        <property type="protein sequence ID" value="ABX38137"/>
        <property type="gene ID" value="Daci_5508"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_5508"/>
    <dbReference type="HOGENOM" id="CLU_1666539_0_0_4"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ABX38137.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="158" mass="18171" checksum="562FE09607F81135" modified="2008-01-15" version="1">MVTDINRTFFTSCHRNILLSRNRFFTQIQDIEKFSAISCRYFSWEYLICKISSLLNKGEIAFLFIEGRSQPSNNFTKISPRTTSSPASFSLLAALARSWDILKKSRIAKHFPASTATHESIESIKPRTRSTFILKTSSKFTFNFSRSDISYNLNLVFA</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="63" xmlns="http://uniprot.org/uniprot">
    <accession>A9BXI6</accession>
    <name>A9BXI6_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">5-oxopent-3-ene-1,2,5-tricarboxylate decarboxylase</fullName>
            <ecNumber evidence="2">4.1.1.68</ecNumber>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_5633</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EC" id="4.1.1.68" evidence="2"/>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX38262.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012207431.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_5633"/>
    <dbReference type="PRIDE" id="A9BXI6"/>
    <dbReference type="EnsemblBacteria" id="ABX38262">
        <property type="protein sequence ID" value="ABX38262"/>
        <property type="gene ID" value="Daci_5633"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_5633"/>
    <dbReference type="eggNOG" id="COG0179">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_028458_3_0_4"/>
    <dbReference type="OMA" id="GRLTNHI"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0018800">
        <property type="term" value="F:5-oxopent-3-ene-1,2,5-tricarboxylate decarboxylase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.850.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011234">
        <property type="entry name" value="Fumarylacetoacetase-like_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036663">
        <property type="entry name" value="Fumarylacetoacetase_C_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01557">
        <property type="entry name" value="FAA_hydrolase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56529">
        <property type="entry name" value="SSF56529"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0456">Lyase</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="FAA_hydrolase" evidence="1">
        <location>
            <begin position="76"/>
            <end position="279"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF01557"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX38262.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="286" mass="31128" checksum="8CB7C8F10356AF8D" modified="2008-01-15" version="1">MKLASFIHAGQPRYGQVLAERFLLPPADFLARHPDLLSVLRAQALGELEQALQAGAVSVDAAQTQALPVIPNPGKLICVGLNYKTHVAETRRADSEHPSLFLRFNDSLAADGDELLRPAFSERFDWEGELAFVIGRGGRHIAKEDAFDHIAGYACFNDVSVRDWQRHTHQFTPGKNFPGTAPFGPWLVTRDEVADVRSLALQTRLNGSVMQQASLGDLIFDIPTIVAYVSRFTPLSPGDVIATGTPGGVGDRREPPLYMKHGDVVEVEITGLGVLRNRIGTDSAAV</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="77" xmlns="http://uniprot.org/uniprot">
    <accession>A9BXK2</accession>
    <name>A9BXK2_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="6">Aldehyde Dehydrogenase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ordered locus">Daci_5650</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="7" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="4">Belongs to the aldehyde dehydrogenase family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX38278.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012207447.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_5650"/>
    <dbReference type="PRIDE" id="A9BXK2"/>
    <dbReference type="EnsemblBacteria" id="ABX38278">
        <property type="protein sequence ID" value="ABX38278"/>
        <property type="gene ID" value="Daci_5650"/>
    </dbReference>
    <dbReference type="GeneID" id="60690013"/>
    <dbReference type="KEGG" id="dac:Daci_5650"/>
    <dbReference type="eggNOG" id="COG1012">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_005391_0_0_4"/>
    <dbReference type="OMA" id="RKAFEKW"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016620">
        <property type="term" value="F:oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.309.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.605.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016161">
        <property type="entry name" value="Ald_DH/histidinol_DH"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016163">
        <property type="entry name" value="Ald_DH_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016160">
        <property type="entry name" value="Ald_DH_CS_CYS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029510">
        <property type="entry name" value="Ald_DH_CS_GLU"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016162">
        <property type="entry name" value="Ald_DH_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015590">
        <property type="entry name" value="Aldehyde_DH_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00171">
        <property type="entry name" value="Aldedh"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53720">
        <property type="entry name" value="SSF53720"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00070">
        <property type="entry name" value="ALDEHYDE_DEHYDR_CYS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00687">
        <property type="entry name" value="ALDEHYDE_DEHYDR_GLU"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="1 4" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Aldedh" evidence="5">
        <location>
            <begin position="32"/>
            <end position="494"/>
        </location>
    </feature>
    <feature type="active site" evidence="2">
        <location>
            <position position="263"/>
        </location>
    </feature>
    <feature type="active site" evidence="3">
        <location>
            <position position="302"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023002"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU10007"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU10008"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="RuleBase" id="RU003345"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="Pfam" id="PF00171"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="ABX38278.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="507" mass="54787" checksum="132FC1CE78C087CB" modified="2008-01-15" version="1">MTVYAAPGAAGAKIAYKARYDNFIGGRFVPPVKEQYFDVVTPISGKVYTRAARSTAEDIELALDAAHAASDAWGRTSAAERANVLLKIADRIEANLELLAYAETVDNGKAIRETLNADIPLTVDHFRYFAGCVRAQEGALSHIDETTVAYHIQEPLGVVGQIIPWNFPILMAAWKLAPALGAGNCVVLKPAESTPISILILAELIADLLPPGVLNIVNGFGREAGMPLATSKRIAKIAFTGSTSTGRVIAQAAANNLIPATLELGGKSPNIFFADVMDKDDAFLDKAVEGLVLFAFNQGEVCTCPSRALIHESIYDRFMERVLQRVAAIRHANPLDTDSMMGAQASKEQLTKILSYLDLGKQEGAEVLAGGGQAHLGGDLEGGYYVQPTLFKGHNKMRIFQEEIFGPVLAVTTFKDEAEALAIANDTLYGLGAGVWSRNGNVAYRMGRAIKAGRVWTNCYHAYPAHAAFGGYKESGIGRETHKMMLDHYQQTKNLLVSYSENKLGFF</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="76" xmlns="http://uniprot.org/uniprot">
    <accession>A9BY23</accession>
    <name>A9BY23_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="10">ABC transporter related</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="10" type="ordered locus">Daci_1314</name>
    </gene>
    <organism evidence="10 11">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="10 11" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="11">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="11" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="11">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the ABC transporter superfamily.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX33958.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012203244.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_1314"/>
    <dbReference type="PRIDE" id="A9BY23"/>
    <dbReference type="EnsemblBacteria" id="ABX33958">
        <property type="protein sequence ID" value="ABX33958"/>
        <property type="gene ID" value="Daci_1314"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_1314"/>
    <dbReference type="eggNOG" id="COG1134">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_000604_101_1_4"/>
    <dbReference type="OMA" id="HFQKKCV"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0140359">
        <property type="term" value="F:ABC-type transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd03220">
        <property type="entry name" value="ABC_KpsT_Wzt"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="CDD" id="cd10147">
        <property type="entry name" value="Wzt_C-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003593">
        <property type="entry name" value="AAA+_ATPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003439">
        <property type="entry name" value="ABC_transporter-like_ATP-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015860">
        <property type="entry name" value="ABC_transpr_TagH-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029439">
        <property type="entry name" value="Wzt_C"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00005">
        <property type="entry name" value="ABC_tran"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00382">
        <property type="entry name" value="AAA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50893">
        <property type="entry name" value="ABC_TRANSPORTER_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4 7" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="2" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="6" id="KW-0472">Membrane</keyword>
    <keyword evidence="3 7" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="11" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="5" id="KW-1278">Translocase</keyword>
    <feature type="domain" description="ABC transporter" evidence="9">
        <location>
            <begin position="15"/>
            <end position="254"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="8">
        <location>
            <begin position="248"/>
            <end position="279"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="8">
        <location>
            <begin position="261"/>
            <end position="277"/>
        </location>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <begin position="67"/>
            <end position="74"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00005417"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022967"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00434"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="9">
        <source>
            <dbReference type="PROSITE" id="PS50893"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="EMBL" id="ABX33958.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="424" mass="46006" checksum="22005A7656D9C0FD" modified="2008-01-15" version="1">MNAAMEYKGSQDVALRVEGVGKEYKLYDSPGRRARALLTGKALHRSHWALHDVSFALHRGECLGVIGDNGAGKSTLLKLLAGTLHPSTGSISRDGRVTAILELGAGFHPEFSGRDNLYFGGSLIGIDAAQMRTLEAAIVAFAELGEALDRPVKTYSSGMTVRLAFALVTAVRPDVLIIDEALAVGDQSFQKKCIERILDFRRSGCTILFCSHSPYHIRHLCDRALWLVKGQVHALGETESVLAAYEAASRAGEEPGQSSGEHPQALPQQQAQAEAALSNKPHASDAAHLLSVDMPGLDAAQASADGLPILRGHDLELRFRAHVPNEAAPSFGFMLEQLNGVGITSVAMHTEGVKPVRQADGSWGMDLRFPELPLHTGDYVVSAYLFDETGLMVMDEWLRFRSLRFISDQPLPGIVHLPHRWEAP</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="57" xmlns="http://uniprot.org/uniprot">
    <accession>A9BY96</accession>
    <name>A9BY96_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Hydroxydechloroatrazine ethylaminohydrolase</fullName>
            <ecNumber evidence="2">3.5.99.3</ecNumber>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_1591</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EC" id="3.5.99.3" evidence="2"/>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX34235.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012203520.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_1591"/>
    <dbReference type="PRIDE" id="A9BY96"/>
    <dbReference type="EnsemblBacteria" id="ABX34235">
        <property type="protein sequence ID" value="ABX34235"/>
        <property type="gene ID" value="Daci_1591"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_1591"/>
    <dbReference type="eggNOG" id="COG0402">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_012358_2_3_4"/>
    <dbReference type="OMA" id="TWLAHGI"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016810">
        <property type="term" value="F:hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.30.40.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006680">
        <property type="entry name" value="Amidohydro-rel"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011059">
        <property type="entry name" value="Metal-dep_hydrolase_composite"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR032466">
        <property type="entry name" value="Metal_Hydrolase"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01979">
        <property type="entry name" value="Amidohydro_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51338">
        <property type="entry name" value="SSF51338"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51556">
        <property type="entry name" value="SSF51556"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Amidohydro-rel" evidence="1">
        <location>
            <begin position="64"/>
            <end position="429"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF01979"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX34235.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="461" mass="49418" checksum="D76AF78343D0BC24" modified="2008-01-15" version="1">MTLIALNADVLVTMDAQRREIRDGALVADGPAVQWVGATAELPPQYRRMVDDGTAQVLDMRGRVVMPGLVNTHHHMYQSLTRAVPAAQDAELFSWLTNLYMLWSHLTPEMIHVSTQTAMAELMLSGCTTTSDHLYLYPNGARLDDSIAAAQQMGMRFHAARGSMSLGRSKGGLPPDAVVEEEEAILRDSLRLIQQYHDSARHSMLRVVLAPCSPFSVTRELMRESAVLARAHGVSLHTHLAENDNDVAFSREKFGLTPAQYAESLGWVGPDVWHAHCVKLDAEGIALFARTGTGVAHCPCSNMRLASGIAPVRTMRDAGVPVGLGVDGSASNDGAHMLGEARQALLLQRVGHGPAAMGAREALEIATLGGARVLGRDDIGALAPGMSADFVAFDMSGVGYAGAGHDPVAALVFCTPTDVSTSVINGRVVVRDGHLLTADLPRVLTRHRELARTLFERAAGH</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="61" xmlns="http://uniprot.org/uniprot">
    <accession>A9BYA8</accession>
    <name>A9BYA8_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Dihydrodipicolinate synthetase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_1603</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the DapA family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX34247.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_1603"/>
    <dbReference type="PRIDE" id="A9BYA8"/>
    <dbReference type="EnsemblBacteria" id="ABX34247">
        <property type="protein sequence ID" value="ABX34247"/>
        <property type="gene ID" value="Daci_1603"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_1603"/>
    <dbReference type="eggNOG" id="COG0329">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_049343_5_3_4"/>
    <dbReference type="OMA" id="FLECGKF"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016829">
        <property type="term" value="F:lyase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.20.20.70">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013785">
        <property type="entry name" value="Aldolase_TIM"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002220">
        <property type="entry name" value="DapA-like"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR12128">
        <property type="entry name" value="PTHR12128"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00701">
        <property type="entry name" value="DHDPS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF001365">
        <property type="entry name" value="DHDPS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM01130">
        <property type="entry name" value="DHDPS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="1" id="KW-0456">Lyase</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="PIRNR" id="PIRNR001365"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX34247.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="337" mass="36559" checksum="10379533FC13C6A7" modified="2008-01-15" version="1">MDGAPKAIFIKSKRDLQAFDWKEYPMAARFPGYVPAGVIPAALMPFNEDLSIDETSLRRHMRDLAAVRGISALCVNGVSQEVPGLTLDEQRRALDIMADEVGDRIPLMHGVYAHGPLDAAQIARQAEAGGASCLLVFPPAVFARGAAMLPQMTLGNYKAIADATDLPLIVFQYETATGMAHPLDTLVRLAEEVPSVKAIKDRSNNPVEHERNIRVLQSLPRPVNVLTTHSAWLMPSLTLGCKGILSGSGSVHADLHVALWEAVQAGDLAAARTINDSIHPLSSCFYSAPMLDMHTRMKEALVLLGRLPSSRVRLPWVDLGDAERQRVRQALVSAGLL</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-01-19" version="49" xmlns="http://uniprot.org/uniprot">
    <accession>A9BYE9</accession>
    <name>A9BYE9_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Daci_1645</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="4" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX34288.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012203573.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_1645"/>
    <dbReference type="EnsemblBacteria" id="ABX34288">
        <property type="protein sequence ID" value="ABX34288"/>
        <property type="gene ID" value="Daci_1645"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_1645"/>
    <dbReference type="eggNOG" id="COG5449">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_080134_0_0_4"/>
    <dbReference type="OMA" id="WTEPETR"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011928">
        <property type="entry name" value="Phage_phiJL001_Gp84"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018964">
        <property type="entry name" value="Phage_phiJL001_Gp84_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019228">
        <property type="entry name" value="Phage_phiJL001_Gp84_N"/>
    </dbReference>
    <dbReference type="Pfam" id="PF09931">
        <property type="entry name" value="DUF2163"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF09356">
        <property type="entry name" value="Phage_BR0599"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR02218">
        <property type="entry name" value="phg_TIGR02218"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="DUF2163" evidence="2">
        <location>
            <begin position="4"/>
            <end position="167"/>
        </location>
    </feature>
    <feature type="domain" description="Phage_BR0599" evidence="1">
        <location>
            <begin position="216"/>
            <end position="299"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF09356"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF09931"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ABX34288.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="310" mass="33536" checksum="4F8908B005AE8F13" modified="2008-01-15" version="1">MPRVIPIALQQHLDGDATTVCLLVRIDPVAPGFDPVGVTTLDRDVLFDAGTGALLYRAAVGVDSSARVSSSDMAVDNAEGTSLVPEFDVPVSERDLVAGAYDYARWTSYLVNFEDTTQFVELARGELGQVRVSQGMSFTFEMLGLTKRLKQTVVEKDSLRCRAIFGSQPLGTPGATVTQLFYCGREVDGLFVGSHVVAPGEENTVSFSTALSEPDGYFKPGMLRWVTGANAGRVYEVEEHKAGVLSLTFGAMFPVQAGDEFRVRPDCTKWKDGPNGCKHWFGANWVLHYRGEPYIPVGDTGQINAPGASV</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="44" xmlns="http://uniprot.org/uniprot">
    <accession>A9BYS2</accession>
    <name>A9BYS2_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_2177</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX34817.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012204100.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_2177"/>
    <dbReference type="PRIDE" id="A9BYS2"/>
    <dbReference type="EnsemblBacteria" id="ABX34817">
        <property type="protein sequence ID" value="ABX34817"/>
        <property type="gene ID" value="Daci_2177"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_2177"/>
    <dbReference type="eggNOG" id="ENOG5033BM7">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_2839687_0_0_4"/>
    <dbReference type="OMA" id="GGDSCAP"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="6"/>
            <end position="23"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX34817.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="64" mass="6696" checksum="68FEF7E10941C540" modified="2008-01-15" version="1">MWQNIIVGLIVALAGMSLVWRYLPARWRQKAGQMHPALAPKDAGGCGGCSACGGDSCAPDKRGP</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="75" xmlns="http://uniprot.org/uniprot">
    <accession>A9BYW3</accession>
    <name>A9BYW3_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="7">Cation diffusion facilitator family transporter</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ordered locus">Daci_2218</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="8" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX34858.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012204141.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_2218"/>
    <dbReference type="PRIDE" id="A9BYW3"/>
    <dbReference type="EnsemblBacteria" id="ABX34858">
        <property type="protein sequence ID" value="ABX34858"/>
        <property type="gene ID" value="Daci_2218"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_2218"/>
    <dbReference type="eggNOG" id="COG1230">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_013430_0_0_4"/>
    <dbReference type="OMA" id="GHEKMLH"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008324">
        <property type="term" value="F:cation transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.1510.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002524">
        <property type="entry name" value="Cation_efflux"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036837">
        <property type="entry name" value="Cation_efflux_CTD_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027469">
        <property type="entry name" value="Cation_efflux_TMD_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01545">
        <property type="entry name" value="Cation_efflux"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF160240">
        <property type="entry name" value="SSF160240"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF161111">
        <property type="entry name" value="SSF161111"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01297">
        <property type="entry name" value="CDF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="5 6" id="KW-0472">Membrane</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 6" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="4 6" id="KW-1133">Transmembrane helix</keyword>
    <keyword evidence="2" id="KW-0813">Transport</keyword>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="20"/>
            <end position="45"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="80"/>
            <end position="104"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="116"/>
            <end position="135"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="156"/>
            <end position="174"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022448"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="ABX34858.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="297" mass="32159" checksum="4D33CD3068D740E1" modified="2008-01-15" version="1">MSDSHQHGDVRALPESRLWFAFGLTGTFMVVEIIGGMVTGSLALISDAMHMLTDAMALLLALVAIRAGRKAADLLRTYGYARFEILAAAVNALVLLGVAFYILYEAYRRLSAPAEIQSLGMMAVAAVGLVINLLSMRLLSGGKDESLNVKGAYLEVWADMLGSVGVLAGAALIWLTGWRWIDSAVAVGIGFMVFPRTWTLLRECINILLEGVPSGMSLQAVRETISGTAGVAAIHDVHLWAVTQSKPMLTGHVVLLPGADGEQVRRDIEDRLQAGFDLHHTTLQMEREDRSPSEHIH</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="82" xmlns="http://uniprot.org/uniprot">
    <accession>A9BZ07</accession>
    <name>A9BZ07_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Two component transcriptional regulator, LytTR family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ordered locus">Daci_2262</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="5" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX34902.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012204185.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_2262"/>
    <dbReference type="PRIDE" id="A9BZ07"/>
    <dbReference type="EnsemblBacteria" id="ABX34902">
        <property type="protein sequence ID" value="ABX34902"/>
        <property type="gene ID" value="Daci_2262"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_2262"/>
    <dbReference type="eggNOG" id="COG3279">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_000445_14_1_4"/>
    <dbReference type="OMA" id="VARQYAH"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000160">
        <property type="term" value="P:phosphorelay signal transduction system"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011006">
        <property type="entry name" value="CheY-like_superfamily"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007492">
        <property type="entry name" value="LytTR_DNA-bd_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001789">
        <property type="entry name" value="Sig_transdc_resp-reg_receiver"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR039420">
        <property type="entry name" value="WalR-like"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR48111">
        <property type="entry name" value="PTHR48111"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04397">
        <property type="entry name" value="LytTR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00072">
        <property type="entry name" value="Response_reg"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00850">
        <property type="entry name" value="LytTR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00448">
        <property type="entry name" value="REC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52172">
        <property type="entry name" value="SSF52172"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50930">
        <property type="entry name" value="HTH_LYTTR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50110">
        <property type="entry name" value="RESPONSE_REGULATORY"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0597">Phosphoprotein</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Response regulatory" evidence="2">
        <location>
            <begin position="6"/>
            <end position="125"/>
        </location>
    </feature>
    <feature type="domain" description="HTH LytTR-type" evidence="3">
        <location>
            <begin position="171"/>
            <end position="269"/>
        </location>
    </feature>
    <feature type="modified residue" description="4-aspartylphosphate" evidence="1">
        <location>
            <position position="58"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00169"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS50110"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="PROSITE" id="PS50930"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="ABX34902.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="269" mass="29661" checksum="07A19A05F58CEE76" modified="2008-01-15" version="1">MTSSPRALIAEDEPLLAEDLRQALARAWPELQIAAMVGDGLSAARQALALQPDVLFFDIRMPGQSGLEAAAELADAWPEAQPFPILVFVTAYDQYAMDAFEAQAVDYLLKPVQPERLARCVQRLRELLAQRTAAPAGAALAQALEQLRHLAGATAPAAATEPPLQMIQAGVGTQIQMVPVQDVVYFEAADKYVRVLTASHEYLVRTPLKELLPRLDAEEFWQVHRGTVVRAAAIANAQRDEAGRLWLQLRERAEKLAVSRLYAQRFKAM</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="56" xmlns="http://uniprot.org/uniprot">
    <accession>A9BZA4</accession>
    <name>A9BZA4_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ordered locus">Daci_2566</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="5" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Periplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the UPF0065 (bug) family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX35204.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012204483.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_2566"/>
    <dbReference type="PRIDE" id="A9BZA4"/>
    <dbReference type="EnsemblBacteria" id="ABX35204">
        <property type="protein sequence ID" value="ABX35204"/>
        <property type="gene ID" value="Daci_2566"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_2566"/>
    <dbReference type="eggNOG" id="COG3181">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_045683_0_0_4"/>
    <dbReference type="OMA" id="HNMGIAT"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0042597">
        <property type="term" value="C:periplasmic space"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.190.150">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005064">
        <property type="entry name" value="BUG"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR042100">
        <property type="entry name" value="Bug_dom1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR42928">
        <property type="entry name" value="PTHR42928"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03401">
        <property type="entry name" value="TctC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF017082">
        <property type="entry name" value="YflP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="3">
        <location>
            <begin position="1"/>
            <end position="27"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5002735992" evidence="3">
        <location>
            <begin position="28"/>
            <end position="327"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004418"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00006987"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="ABX35204.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="327" mass="34437" checksum="CD9E4FB3E5C6B8C2" modified="2008-01-15" version="1">MRHLIRNPLAQTLLAAALSAASLAAQAFPNKPVTIVVPYAAGGSTDVLARVLAEAMTRDLGQQVIVENLGGAGGTIGTSRVTRAQADGHTLLLHNMGIATAPALYSKLAFDVRRDLEPIALAGDVPMILVRSKGFAPATLADFIAHMKAKPGEVRFSHAGVGATSHLCAMLLLQTTSTEATLVPYRGTGPALQDLVAGNVDVICDQPVATGPHIQAGMLKGYAVATRERLPSLPDVPTFAQAGQPGFELAVWHGLYAPRGTPQAVIERLNKSLRTALSEPALVKRFTDMSVIIPPADRLTPDALRQHTTAEIKRWDPVIKAAGAKAE</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="62" xmlns="http://uniprot.org/uniprot">
    <accession>A9BZA9</accession>
    <name>A9BZA9_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Squalene-associated FAD-dependent desaturase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_2571</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX35209.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012204488.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_2571"/>
    <dbReference type="PRIDE" id="A9BZA9"/>
    <dbReference type="EnsemblBacteria" id="ABX35209">
        <property type="protein sequence ID" value="ABX35209"/>
        <property type="gene ID" value="Daci_2571"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_2571"/>
    <dbReference type="eggNOG" id="COG1232">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_022687_2_1_4"/>
    <dbReference type="OMA" id="HSMIFNQ"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016491">
        <property type="term" value="F:oxidoreductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.50.50.60">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002937">
        <property type="entry name" value="Amino_oxidase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036188">
        <property type="entry name" value="FAD/NAD-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017830">
        <property type="entry name" value="SQase_HpnE"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01593">
        <property type="entry name" value="Amino_oxidase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51905">
        <property type="entry name" value="SSF51905"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR03467">
        <property type="entry name" value="HpnE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Amino_oxidase" evidence="1">
        <location>
            <begin position="25"/>
            <end position="452"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF01593"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX35209.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="462" mass="49087" checksum="86E6C600AAF99CAB" modified="2008-01-15" version="1">MSRDSAKHTPRAAQPRAAIIGGGWAGFAAALTLARSGWHITLHEAAREPGGRARGMDLDTPQGPLRVDNGQHILIGAYTESLRLMREVGVDPEQALHRQPMALPYIDGSGLRFPDWPAPLDALAGIATARGWSLGERAALLARAVRWRLAGFRCAPQATVADLCAGLPQRLVTEFIDPLCISALNTPIHLASGTVFLRVLRDALFSGRGGSHFLVPRRDLGSLFPAPAAQWLQERGHAVRLGSRVAELQPQGPHWTLGAAQGEDAPFDAVLLACPAPEAARLALTAAEHDSLPARDGIALQRWAQLAQDLQHRPIATVYAQTGDPSHTLPPGAPWLALRSTPDAPAQFVFDRGQLGGPQGLMAFVISDSASDRETLQAQVLAQARAQLGWHGLVALRTVIDKRATFACLPQLQRPGMELGHGLWACGDHVDGPYPATIEGAVRSGLQAAEAIGQALGAEGKA</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2021-06-02" version="38" xmlns="http://uniprot.org/uniprot">
    <accession>A9BZL1</accession>
    <name>A9BZL1_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Daci_3281</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="4" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX35919.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012205119.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_3281"/>
    <dbReference type="EnsemblBacteria" id="ABX35919">
        <property type="protein sequence ID" value="ABX35919"/>
        <property type="gene ID" value="Daci_3281"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_3281"/>
    <dbReference type="eggNOG" id="ENOG50331CP">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_144870_0_1_4"/>
    <dbReference type="OMA" id="GLPYQPR"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR021762">
        <property type="entry name" value="DUF3325"/>
    </dbReference>
    <dbReference type="Pfam" id="PF11804">
        <property type="entry name" value="DUF3325"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0732">Signal</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="signal peptide" evidence="2">
        <location>
            <begin position="1"/>
            <end position="24"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5002732698" evidence="2">
        <location>
            <begin position="25"/>
            <end position="125"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="48"/>
            <end position="65"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="72"/>
            <end position="93"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="99"/>
            <end position="124"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ABX35919.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="125" mass="12927" checksum="80B5B6C38BA659FD" modified="2008-01-15" version="1">MSTLHASLAALALAFAGMAALAFAMDRHYEQLTGARELPARRGPQLRGLGTALLALALVPVVSGWGGTVGTVAWLGFVSAGALMAVALISAHARWAARLAWLAGVLAVADFAWIGFSFGTTGFFR</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="84" xmlns="http://uniprot.org/uniprot">
    <accession>A9BZM0</accession>
    <name>A9BZM0_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Thiamine-phosphate pyrophosphorylase</fullName>
            <ecNumber evidence="2">2.5.1.3</ecNumber>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_3290</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EC" id="2.5.1.3" evidence="2"/>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX35928.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012205128.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_3290"/>
    <dbReference type="PRIDE" id="A9BZM0"/>
    <dbReference type="EnsemblBacteria" id="ABX35928">
        <property type="protein sequence ID" value="ABX35928"/>
        <property type="gene ID" value="Daci_3290"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_3290"/>
    <dbReference type="eggNOG" id="COG0352">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_018272_8_0_4"/>
    <dbReference type="OMA" id="ITAFQFR"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004789">
        <property type="term" value="F:thiamine-phosphate diphosphorylase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="CDD" id="cd00564">
        <property type="entry name" value="TMP_TenI"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.20.20.70">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013785">
        <property type="entry name" value="Aldolase_TIM"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036206">
        <property type="entry name" value="ThiamineP_synth_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR022998">
        <property type="entry name" value="ThiamineP_synth_TenI"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02581">
        <property type="entry name" value="TMP-TENI"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51391">
        <property type="entry name" value="SSF51391"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="TMP-TENI" evidence="1">
        <location>
            <begin position="116"/>
            <end position="286"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF02581"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX35928.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="307" mass="32438" checksum="32C896EAFC2EF535" modified="2008-01-15" version="1">MSNDSIQSWADAIVRLHGATFAPEGSALPSQPVPQAQRQEPAYLAALQACSALGFIAIDAQTLACAWQAQTLRRGRFEATLWPDDPRDFGLEGADPALAFPECPRSLGLYGVLPDAQWVGRMARAGVPTVQLRFKSEDRDAIAREVRSAVAAVEGTGALLFINDHWREAIDAGAYGVHVGQEDLDALAGADLQAIHASGLRLGVSTHGYAEMVRAHAVQPSYIALGAVFPTTLKKMATAPQGLARLGAYVRLMQRYPLVAIGGISADQFPAVRATGVGSVAVVRALVNAEDPEAAAQQLLARMHAAG</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="72" xmlns="http://uniprot.org/uniprot">
    <accession>A9BZP5</accession>
    <name>A9BZP5_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="8">Acyl-CoA dehydrogenase domain protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="8" type="ordered locus">Daci_3315</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="9" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>FAD</name>
            <dbReference type="ChEBI" id="CHEBI:57692"/>
        </cofactor>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the acyl-CoA dehydrogenase family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX35953.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_3315"/>
    <dbReference type="PRIDE" id="A9BZP5"/>
    <dbReference type="EnsemblBacteria" id="ABX35953">
        <property type="protein sequence ID" value="ABX35953"/>
        <property type="gene ID" value="Daci_3315"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_3315"/>
    <dbReference type="eggNOG" id="COG1960">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_018204_12_2_4"/>
    <dbReference type="OMA" id="CMFHMMN"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0050660">
        <property type="term" value="F:flavin adenine dinucleotide binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016627">
        <property type="term" value="F:oxidoreductase activity, acting on the CH-CH group of donors"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.540.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.110.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025878">
        <property type="entry name" value="Acyl-CoA_dh-like_C_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020953">
        <property type="entry name" value="Acyl-CoA_DH_N_bac"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR046373">
        <property type="entry name" value="Acyl-CoA_Oxase/DH_mid-dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036250">
        <property type="entry name" value="AcylCo_DH-like_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009075">
        <property type="entry name" value="AcylCo_DH/oxidase_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013786">
        <property type="entry name" value="AcylCoA_DH/ox_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037069">
        <property type="entry name" value="AcylCoA_DH/ox_N_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009100">
        <property type="entry name" value="AcylCoA_DH/oxidase_NM_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00441">
        <property type="entry name" value="Acyl-CoA_dh_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12806">
        <property type="entry name" value="Acyl-CoA_dh_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02771">
        <property type="entry name" value="Acyl-CoA_dh_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12418">
        <property type="entry name" value="AcylCoA_DH_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47203">
        <property type="entry name" value="SSF47203"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56645">
        <property type="entry name" value="SSF56645"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-0274">FAD</keyword>
    <keyword evidence="3" id="KW-0285">Flavoprotein</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="AcylCoA_DH_N" evidence="6">
        <location>
            <begin position="38"/>
            <end position="61"/>
        </location>
    </feature>
    <feature type="domain" description="Acyl-CoA_dh_N" evidence="5">
        <location>
            <begin position="66"/>
            <end position="174"/>
        </location>
    </feature>
    <feature type="domain" description="Acyl-CoA_dh_1" evidence="4">
        <location>
            <begin position="387"/>
            <end position="503"/>
        </location>
    </feature>
    <feature type="domain" description="Acyl-CoA_dh_C" evidence="7">
        <location>
            <begin position="521"/>
            <end position="640"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001974"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00009347"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022827"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="Pfam" id="PF00441"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="Pfam" id="PF02771"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="Pfam" id="PF12418"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="Pfam" id="PF12806"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="ABX35953.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="645" mass="70153" checksum="FA2A5DA9A85E2BDB" modified="2008-01-15" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="68" xmlns="http://uniprot.org/uniprot">
    <accession>A9BZR0</accession>
    <name>A9BZR0_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="6">Flavodoxin/nitric oxide synthase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ordered locus">Daci_3330</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="7" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>FMN</name>
            <dbReference type="ChEBI" id="CHEBI:58210"/>
        </cofactor>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX35968.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_3330"/>
    <dbReference type="PRIDE" id="A9BZR0"/>
    <dbReference type="EnsemblBacteria" id="ABX35968">
        <property type="protein sequence ID" value="ABX35968"/>
        <property type="gene ID" value="Daci_3330"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_3330"/>
    <dbReference type="eggNOG" id="COG0655">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_141001_0_0_4"/>
    <dbReference type="OMA" id="ANLGYMS"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0010181">
        <property type="term" value="F:FMN binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016491">
        <property type="term" value="F:oxidoreductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.360">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008254">
        <property type="entry name" value="Flavodoxin/NO_synth"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029039">
        <property type="entry name" value="Flavoprotein-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005025">
        <property type="entry name" value="FMN_Rdtase-like"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03358">
        <property type="entry name" value="FMN_red"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52218">
        <property type="entry name" value="SSF52218"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50902">
        <property type="entry name" value="FLAVODOXIN_LIKE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0285">Flavoprotein</keyword>
    <keyword evidence="3" id="KW-0288">FMN</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Flavodoxin-like" evidence="5">
        <location>
            <begin position="34"/>
            <end position="194"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="4">
        <location>
            <begin position="1"/>
            <end position="20"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001917"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022630"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022643"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="PROSITE" id="PS50902"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="ABX35968.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="194" mass="20107" checksum="7B02F3396A3B5D86" modified="2008-01-15" version="1">MGPAGGLPEPHRGGSGPVLPPSVYARGMNASKTLLIVYHSMTGGTRQMAEAARDGAAAEGQGVQVRLLHASAAGPDDVLSADGYLFATPENLAAISGQLKDFFDRSYYAALEHLNGRPYASLICAGSDGQNAARQIARIATGWRLKPVAEPLIICTHAQTTKAILAPKRIAAAELEQCRALGEAMGAGLALGVF</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="72" xmlns="http://uniprot.org/uniprot">
    <accession>A9BZV4</accession>
    <name>A9BZV4_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="3">RNA binding S1 domain protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Daci_3374</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="4" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX36012.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012205212.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_3374"/>
    <dbReference type="PRIDE" id="A9BZV4"/>
    <dbReference type="EnsemblBacteria" id="ABX36012">
        <property type="protein sequence ID" value="ABX36012"/>
        <property type="gene ID" value="Daci_3374"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_3374"/>
    <dbReference type="eggNOG" id="COG2183">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_009833_0_2_4"/>
    <dbReference type="OMA" id="RWAWRTR"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003676">
        <property type="term" value="F:nucleic acid binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006139">
        <property type="term" value="P:nucleobase-containing compound metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd05685">
        <property type="entry name" value="S1_Tex"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.650">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.3500.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.50.140">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.420.140">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041692">
        <property type="entry name" value="HHH_9"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012340">
        <property type="entry name" value="NA-bd_OB-fold"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012337">
        <property type="entry name" value="RNaseH-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010994">
        <property type="entry name" value="RuvA_2-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR022967">
        <property type="entry name" value="S1_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003029">
        <property type="entry name" value="S1_domain"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR044146">
        <property type="entry name" value="S1_Tex"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023323">
        <property type="entry name" value="Tex-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023319">
        <property type="entry name" value="Tex-like_HTH_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018974">
        <property type="entry name" value="Tex-like_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR032639">
        <property type="entry name" value="Tex_YqgF"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006641">
        <property type="entry name" value="YqgF/RNaseH-like_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037027">
        <property type="entry name" value="YqgF/RNaseH-like_dom_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF17674">
        <property type="entry name" value="HHH_9"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00575">
        <property type="entry name" value="S1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF09371">
        <property type="entry name" value="Tex_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF16921">
        <property type="entry name" value="Tex_YqgF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00316">
        <property type="entry name" value="S1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00732">
        <property type="entry name" value="YqgFc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47781">
        <property type="entry name" value="SSF47781"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50249">
        <property type="entry name" value="SSF50249"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53098">
        <property type="entry name" value="SSF53098"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50126">
        <property type="entry name" value="S1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="S1 motif" evidence="2">
        <location>
            <begin position="664"/>
            <end position="733"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="736"/>
            <end position="786"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS50126"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ABX36012.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="786" mass="86216" checksum="F11593A006CDFE29" modified="2008-01-15" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="78" xmlns="http://uniprot.org/uniprot">
    <accession>A9BZZ3</accession>
    <name>A9BZZ3_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="6">tRNA-dihydrouridine(20/20a) synthase</fullName>
            <ecNumber evidence="6">1.3.1.91</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="6">U20-specific dihydrouridine synthase</fullName>
            <shortName evidence="6">U20-specific Dus</shortName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="6">tRNA-dihydrouridine synthase A</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="6" type="primary">dusA</name>
        <name evidence="10" type="ordered locus">Daci_3621</name>
    </gene>
    <organism evidence="10 11">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="10 11" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="11">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="11" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="11">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="6">Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines. Specifically modifies U20 and U20a in tRNAs.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="6">
            <text>5,6-dihydrouridine(20) in tRNA + NAD(+) = H(+) + NADH + uridine(20) in tRNA</text>
            <dbReference type="Rhea" id="RHEA:53340"/>
            <dbReference type="Rhea" id="RHEA-COMP:13533"/>
            <dbReference type="Rhea" id="RHEA-COMP:13534"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:57540"/>
            <dbReference type="ChEBI" id="CHEBI:57945"/>
            <dbReference type="ChEBI" id="CHEBI:65315"/>
            <dbReference type="ChEBI" id="CHEBI:74443"/>
            <dbReference type="EC" id="1.3.1.91"/>
        </reaction>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="6">
            <text>5,6-dihydrouridine(20) in tRNA + NADP(+) = H(+) + NADPH + uridine(20) in tRNA</text>
            <dbReference type="Rhea" id="RHEA:53336"/>
            <dbReference type="Rhea" id="RHEA-COMP:13533"/>
            <dbReference type="Rhea" id="RHEA-COMP:13534"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:57783"/>
            <dbReference type="ChEBI" id="CHEBI:58349"/>
            <dbReference type="ChEBI" id="CHEBI:65315"/>
            <dbReference type="ChEBI" id="CHEBI:74443"/>
            <dbReference type="EC" id="1.3.1.91"/>
        </reaction>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="6">
            <text>5,6-dihydrouridine(20a) in tRNA + NAD(+) = H(+) + NADH + uridine(20a) in tRNA</text>
            <dbReference type="Rhea" id="RHEA:53348"/>
            <dbReference type="Rhea" id="RHEA-COMP:13535"/>
            <dbReference type="Rhea" id="RHEA-COMP:13536"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:57540"/>
            <dbReference type="ChEBI" id="CHEBI:57945"/>
            <dbReference type="ChEBI" id="CHEBI:65315"/>
            <dbReference type="ChEBI" id="CHEBI:74443"/>
        </reaction>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="6">
            <text>5,6-dihydrouridine(20a) in tRNA + NADP(+) = H(+) + NADPH + uridine(20a) in tRNA</text>
            <dbReference type="Rhea" id="RHEA:53344"/>
            <dbReference type="Rhea" id="RHEA-COMP:13535"/>
            <dbReference type="Rhea" id="RHEA-COMP:13536"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:57783"/>
            <dbReference type="ChEBI" id="CHEBI:58349"/>
            <dbReference type="ChEBI" id="CHEBI:65315"/>
            <dbReference type="ChEBI" id="CHEBI:74443"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="1 6 7">
            <name>FMN</name>
            <dbReference type="ChEBI" id="CHEBI:58210"/>
        </cofactor>
    </comment>
    <comment type="similarity">
        <text evidence="6">Belongs to the Dus family. DusA subfamily.</text>
    </comment>
    <comment type="similarity">
        <text evidence="7">Belongs to the dus family.</text>
    </comment>
    <dbReference type="EC" id="1.3.1.91" evidence="6"/>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX36255.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_3621"/>
    <dbReference type="PRIDE" id="A9BZZ3"/>
    <dbReference type="EnsemblBacteria" id="ABX36255">
        <property type="protein sequence ID" value="ABX36255"/>
        <property type="gene ID" value="Daci_3621"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_3621"/>
    <dbReference type="eggNOG" id="COG0042">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_013299_2_1_4"/>
    <dbReference type="OMA" id="LIYPYVD"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0050660">
        <property type="term" value="F:flavin adenine dinucleotide binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0010181">
        <property type="term" value="F:FMN binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000049">
        <property type="term" value="F:tRNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0102264">
        <property type="term" value="F:tRNA-dihydrouridine20 synthase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="CDD" id="cd02801">
        <property type="entry name" value="DUS_like_FMN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.20.20.70">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_02041">
        <property type="entry name" value="DusA_subfam"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013785">
        <property type="entry name" value="Aldolase_TIM"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035587">
        <property type="entry name" value="DUS-like_FMN-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001269">
        <property type="entry name" value="DUS_fam"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004653">
        <property type="entry name" value="DusA"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018517">
        <property type="entry name" value="tRNA_hU_synthase_CS"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR42907">
        <property type="entry name" value="PTHR42907"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01207">
        <property type="entry name" value="Dus"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF006621">
        <property type="entry name" value="Dus"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00742">
        <property type="entry name" value="yjbN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01136">
        <property type="entry name" value="UPF0034"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2 6 7" id="KW-0285">Flavoprotein</keyword>
    <keyword evidence="3 6 7" id="KW-0288">FMN</keyword>
    <keyword evidence="6" id="KW-0521">NADP</keyword>
    <keyword evidence="5 6 7" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="11" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="6" id="KW-0694">RNA-binding</keyword>
    <keyword evidence="4 6 7" id="KW-0819">tRNA processing</keyword>
    <keyword evidence="6" id="KW-0820">tRNA-binding</keyword>
    <feature type="domain" description="Dus" evidence="9">
        <location>
            <begin position="17"/>
            <end position="313"/>
        </location>
    </feature>
    <feature type="active site" description="Proton donor" evidence="6 8">
        <location>
            <position position="102"/>
        </location>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <begin position="19"/>
            <end position="21"/>
        </location>
        <ligand>
            <name>FMN</name>
            <dbReference type="ChEBI" id="CHEBI:58210"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <position position="72"/>
        </location>
        <ligand>
            <name>FMN</name>
            <dbReference type="ChEBI" id="CHEBI:58210"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <position position="141"/>
        </location>
        <ligand>
            <name>FMN</name>
            <dbReference type="ChEBI" id="CHEBI:58210"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <position position="173"/>
        </location>
        <ligand>
            <name>FMN</name>
            <dbReference type="ChEBI" id="CHEBI:58210"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <begin position="213"/>
            <end position="215"/>
        </location>
        <ligand>
            <name>FMN</name>
            <dbReference type="ChEBI" id="CHEBI:58210"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <begin position="235"/>
            <end position="236"/>
        </location>
        <ligand>
            <name>FMN</name>
            <dbReference type="ChEBI" id="CHEBI:58210"/>
        </ligand>
    </feature>
    <feature type="site" description="Interacts with tRNA" evidence="6">
        <location>
            <position position="99"/>
        </location>
    </feature>
    <feature type="site" description="Interacts with tRNA; defines subfamily-specific binding signature" evidence="6">
        <location>
            <position position="185"/>
        </location>
    </feature>
    <feature type="site" description="Interacts with tRNA" evidence="6">
        <location>
            <position position="188"/>
        </location>
    </feature>
    <feature type="site" description="Interacts with tRNA; defines subfamily-specific binding signature" evidence="6">
        <location>
            <position position="302"/>
        </location>
    </feature>
    <feature type="site" description="Interacts with tRNA; defines subfamily-specific binding signature" evidence="6">
        <location>
            <position position="305"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001917"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022630"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022643"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022694"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023002"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_02041"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="PIRNR" id="PIRNR006621"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="PIRSR" id="PIRSR006621-1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="9">
        <source>
            <dbReference type="Pfam" id="PF01207"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="EMBL" id="ABX36255.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="336" mass="37902" checksum="F22769935C38BEAD" modified="2008-01-15" version="1">MTNVENQAPASMWRMSVAPMMDWTDKHCRYLHRLLSRHTLLYTEMVTTGALLHGDVPRHLRFEAEEHPVALQLGGSEPSDLAQAARLGAQWGYDEINLNCGCPSERVQRGAFGACLMNEAPLVADCVKAMVDVVDVPVTVKHRIGIDKDESYEFVRDFVGTVADAGCRVFIVHARNAWLKGLSPKENREIPPLRYEIVARLKQDFPELTIAINGGIKADATVQDLLQQVDGVMVGREAYHNPWWLASWDALYYGDASVEHTRESIEEQMVAYMEREARTHGTHWYSIARHMLGLRNGLAGARRWRQVWSNHQLKQLPPSEVMRLARTKPAEAALAA</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-01-19" version="61" xmlns="http://uniprot.org/uniprot">
    <accession>A9C0V8</accession>
    <name>A9C0V8_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Fimbrial protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_5793</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX38421.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_5793"/>
    <dbReference type="EnsemblBacteria" id="ABX38421">
        <property type="protein sequence ID" value="ABX38421"/>
        <property type="gene ID" value="Daci_5793"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_5793"/>
    <dbReference type="eggNOG" id="COG3539">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_962156_0_0_4"/>
    <dbReference type="OMA" id="HEQTIWM"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009289">
        <property type="term" value="C:pilus"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0007155">
        <property type="term" value="P:cell adhesion"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.40.1090">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000259">
        <property type="entry name" value="Adhesion_dom_fimbrial"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036937">
        <property type="entry name" value="Adhesion_dom_fimbrial_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008966">
        <property type="entry name" value="Adhesion_dom_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00419">
        <property type="entry name" value="Fimbrial"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF49401">
        <property type="entry name" value="SSF49401"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Fimbrial" evidence="1">
        <location>
            <begin position="159"/>
            <end position="311"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF00419"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX38421.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="311" mass="33200" checksum="238E93C1B670C7D3" modified="2008-01-15" version="1">MFTPAASIIQLPESINVPAGNIMNGSVLWDSPMVKSTLDTISYSVLSGPSSEIWPQIMNATTLDGDIYSTSLRGIGIRWRAIWKARNFPNGKTMSITTTSNNAGATGWQKDDVHEQTIWMQLIKTGAVQSGTFSVSSYASARFDCNSLCNSWIVMAAGSTVVRTGASCRVKTSNIAVKLQRVNRSQFNGIGATSAPQSFDLELICTGGEANSTLRPFVTLTDANDAANRSDVLTVTGGAAGIGIQIRSSDKVISYGEDSANFGNPNQWQAGIITPNTSNHVIPLTARYVQTQPSVTTGLANGRATFTLNYQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="57" xmlns="http://uniprot.org/uniprot">
    <accession>A9C0Z5</accession>
    <name>A9C0Z5_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ordered locus">Daci_5830</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="5" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Periplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the UPF0065 (bug) family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX38458.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012207627.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_5830"/>
    <dbReference type="PRIDE" id="A9C0Z5"/>
    <dbReference type="EnsemblBacteria" id="ABX38458">
        <property type="protein sequence ID" value="ABX38458"/>
        <property type="gene ID" value="Daci_5830"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_5830"/>
    <dbReference type="eggNOG" id="COG3181">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_045683_0_0_4"/>
    <dbReference type="OMA" id="MFGIVAP"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0042597">
        <property type="term" value="C:periplasmic space"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.190.150">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005064">
        <property type="entry name" value="BUG"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR042100">
        <property type="entry name" value="Bug_dom1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006311">
        <property type="entry name" value="TAT_signal"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR42928">
        <property type="entry name" value="PTHR42928"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03401">
        <property type="entry name" value="TctC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF017082">
        <property type="entry name" value="YflP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51318">
        <property type="entry name" value="TAT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="3">
        <location>
            <begin position="1"/>
            <end position="35"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5002732749" evidence="3">
        <location>
            <begin position="36"/>
            <end position="339"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004418"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00006987"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="ABX38458.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="339" mass="34312" checksum="CB92FE31F6738AA7" modified="2008-01-15" version="1">MTAAHRSHPPNRRALLGAALLTLGAGLALPTAASAAADAGYPARPIKLVVPYTPGGATDVIGRVVGQKLSLALGQPVVVENRAGAAGNLGAAAVAKEKPDGYTLLLGALTSHSINSVLMASTAGFTMDKSFAPIGVVGRVPLVVTVGPSVKAASLGEFIALAKSRPGGLNYGSSGNGSPQHLAAELFKRQAGVPLTHVPYKGSTPALNDLMGSQVDVVFDTLPATQGFIKGGRLRALAVTTAQRVPSIADIPTTAEAGLSGFEVTSMFGLLAPAGTPAPIVARLSGALKEVMGQQEVKDALVAQGAMPTFTTPAEARAQIAEEVARWSAVIRQAGIQPD</sequence>
</entry>
<entry dataset="Swiss-Prot" created="2009-04-14" modified="2022-08-03" version="85" xmlns="http://uniprot.org/uniprot">
    <accession>A9C184</accession>
    <name>SAHH_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Adenosylhomocysteinase</fullName>
            <ecNumber evidence="1">3.3.1.1</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="1">S-adenosyl-L-homocysteine hydrolase</fullName>
            <shortName evidence="1">AdoHcyase</shortName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="1" type="primary">ahcY</name>
        <name type="ordered locus">Daci_5919</name>
    </gene>
    <organism>
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference key="1">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain>DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="1">May play a key role in the regulation of the intracellular concentration of adenosylhomocysteine.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>H2O + S-adenosyl-L-homocysteine = adenosine + L-homocysteine</text>
            <dbReference type="Rhea" id="RHEA:21708"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:16335"/>
            <dbReference type="ChEBI" id="CHEBI:57856"/>
            <dbReference type="ChEBI" id="CHEBI:58199"/>
            <dbReference type="EC" id="3.3.1.1"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>NAD(+)</name>
            <dbReference type="ChEBI" id="CHEBI:57540"/>
        </cofactor>
        <text evidence="1">Binds 1 NAD(+) per subunit.</text>
    </comment>
    <comment type="pathway">
        <text evidence="1">Amino-acid biosynthesis; L-homocysteine biosynthesis; L-homocysteine from S-adenosyl-L-homocysteine: step 1/1.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="1">Belongs to the adenosylhomocysteinase family.</text>
    </comment>
    <dbReference type="EC" id="3.3.1.1" evidence="1"/>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX38547.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012207716.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A9C184"/>
    <dbReference type="SMR" id="A9C184"/>
    <dbReference type="STRING" id="398578.Daci_5919"/>
    <dbReference type="PRIDE" id="A9C184"/>
    <dbReference type="EnsemblBacteria" id="ABX38547">
        <property type="protein sequence ID" value="ABX38547"/>
        <property type="gene ID" value="Daci_5919"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_5919"/>
    <dbReference type="eggNOG" id="COG0499">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_025194_2_0_4"/>
    <dbReference type="OMA" id="NKYGCRE"/>
    <dbReference type="UniPathway" id="UPA00314">
        <property type="reaction ID" value="UER00076"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004013">
        <property type="term" value="F:adenosylhomocysteinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006730">
        <property type="term" value="P:one-carbon metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd00401">
        <property type="entry name" value="SAHH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.1480">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00563">
        <property type="entry name" value="AdoHcyase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR042172">
        <property type="entry name" value="Adenosylhomocyst_ase-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000043">
        <property type="entry name" value="Adenosylhomocysteinase-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015878">
        <property type="entry name" value="Ado_hCys_hydrolase_NAD-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036291">
        <property type="entry name" value="NAD(P)-bd_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020082">
        <property type="entry name" value="S-Ado-L-homoCys_hydrolase_CS"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR23420">
        <property type="entry name" value="PTHR23420"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF05221">
        <property type="entry name" value="AdoHcyase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00670">
        <property type="entry name" value="AdoHcyase_NAD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF001109">
        <property type="entry name" value="Ad_hcy_hydrolase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00996">
        <property type="entry name" value="AdoHcyase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00997">
        <property type="entry name" value="AdoHcyase_NAD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51735">
        <property type="entry name" value="SSF51735"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00936">
        <property type="entry name" value="ahcY"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00738">
        <property type="entry name" value="ADOHCYASE_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00739">
        <property type="entry name" value="ADOHCYASE_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword id="KW-0963">Cytoplasm</keyword>
    <keyword id="KW-0378">Hydrolase</keyword>
    <keyword id="KW-0520">NAD</keyword>
    <keyword id="KW-0554">One-carbon metabolism</keyword>
    <keyword id="KW-1185">Reference proteome</keyword>
    <feature type="chain" id="PRO_1000129282" description="Adenosylhomocysteinase">
        <location>
            <begin position="1"/>
            <end position="476"/>
        </location>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <position position="62"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <position position="141"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <position position="201"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <begin position="202"/>
            <end position="204"/>
        </location>
        <ligand>
            <name>NAD(+)</name>
            <dbReference type="ChEBI" id="CHEBI:57540"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <position position="231"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <position position="235"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <position position="236"/>
        </location>
        <ligand>
            <name>NAD(+)</name>
            <dbReference type="ChEBI" id="CHEBI:57540"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <begin position="265"/>
            <end position="270"/>
        </location>
        <ligand>
            <name>NAD(+)</name>
            <dbReference type="ChEBI" id="CHEBI:57540"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <position position="288"/>
        </location>
        <ligand>
            <name>NAD(+)</name>
            <dbReference type="ChEBI" id="CHEBI:57540"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <position position="323"/>
        </location>
        <ligand>
            <name>NAD(+)</name>
            <dbReference type="ChEBI" id="CHEBI:57540"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <begin position="344"/>
            <end position="346"/>
        </location>
        <ligand>
            <name>NAD(+)</name>
            <dbReference type="ChEBI" id="CHEBI:57540"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <position position="389"/>
        </location>
        <ligand>
            <name>NAD(+)</name>
            <dbReference type="ChEBI" id="CHEBI:57540"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000255" key="1">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00563"/>
        </source>
    </evidence>
    <sequence length="476" mass="51762" checksum="D509C3789698C0EB" modified="2008-01-15" version="1">MNAAVRPVSADTAIADISLAAWGRKEILIAETEMPGLMATREEFAAAQPLKGARIAGSLHMTIQTAVLIETLKALGAEVRWASCNIFSTQDHAAAAIAETGTPVFAIKGESLADYWDYTHRIFEFGAAGTEGEGPNMILDDGGDATMLLHLGMRAEKDLSVLDNPASEEEKIAFAAIRAKLAQDPTWYTRKSAHIIGVTEETTTGVHRLNEMSAKGTLKFRAINVNDSVTKSKFDNLYGCRESLVDGIKRATDVMIAGKVAVVAGYGDVGKGCAQALRALSAQVWVTEIDPINALQAAMEGYKVVTMEWAADKADIFVTTTGNRDIIRHEHMVAMKNEAIVCNIGHFDNEIDVASIEQYQWEEIKPQVDHITFPDGKKIILLAKGRLVNLGCATGHPSFVMSASFANQTIAQIELFTKPDAYEVGKVYVLPKILDEKVARLHLKKVGAMLTELTDGQAAYIGVSKQGPYKPETYRY</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="57" xmlns="http://uniprot.org/uniprot">
    <accession>A9C1I6</accession>
    <name>A9C1I6_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ordered locus">Daci_6021</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="5" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Periplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the UPF0065 (bug) family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX38649.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012207818.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_6021"/>
    <dbReference type="PRIDE" id="A9C1I6"/>
    <dbReference type="EnsemblBacteria" id="ABX38649">
        <property type="protein sequence ID" value="ABX38649"/>
        <property type="gene ID" value="Daci_6021"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_6021"/>
    <dbReference type="eggNOG" id="COG3181">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_045683_0_0_4"/>
    <dbReference type="OMA" id="CMAMAKG"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0042597">
        <property type="term" value="C:periplasmic space"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.190.150">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005064">
        <property type="entry name" value="BUG"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR042100">
        <property type="entry name" value="Bug_dom1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR42928">
        <property type="entry name" value="PTHR42928"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03401">
        <property type="entry name" value="TctC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF017082">
        <property type="entry name" value="YflP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="3">
        <location>
            <begin position="1"/>
            <end position="35"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5002736227" evidence="3">
        <location>
            <begin position="36"/>
            <end position="338"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004418"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00006987"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="ABX38649.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="338" mass="35131" checksum="92F65172D2F129E8" modified="2008-01-15" version="1">MRQTPFASSRTPALWRALAGGLALAATLAAPFAHAQGAGSYPSKTIRLVVPFAPGGSTDILGRLLAQKMGESMHTTVVVDNKPGANGTIGCDLVAKAPADGYTVVLGDVGCMAMAKGLYTKLPYDPLRDFAPISLVARSPLVLTVGAQSPFHSLKELTAAAQAQPGKLNYPSSGTGGPNHLGAELYAMQAKVKIGHVPYKGSAPSVVSLAAGETDFGFLTAVTIAAQLKAGKVRALAVAHNERLQSMPDVPTMSEAGLKDFTADAWFLAAVPAGTPKPIVDRLYAEIAKALPAPEVKEKLDAMGVLPSGLKPDASAQFLRVEVDKWRDVIKNAGITLD</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="71" xmlns="http://uniprot.org/uniprot">
    <accession>A9C1V7</accession>
    <name>A9C1V7_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="10">Fumarate hydratase class I</fullName>
            <ecNumber evidence="10">4.2.1.2</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="13" type="ordered locus">Daci_2654</name>
    </gene>
    <organism evidence="13 14">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="13 14" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="14">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="14" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="14">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="10">Catalyzes the reversible hydration of fumarate to (S)-malate.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1 10">
            <text>(S)-malate = fumarate + H2O</text>
            <dbReference type="Rhea" id="RHEA:12460"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:15589"/>
            <dbReference type="ChEBI" id="CHEBI:29806"/>
            <dbReference type="EC" id="4.2.1.2"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="2 10">
            <name>[4Fe-4S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:49883"/>
        </cofactor>
    </comment>
    <comment type="subunit">
        <text evidence="4 10">Homodimer.</text>
    </comment>
    <comment type="similarity">
        <text evidence="3 10">Belongs to the class-I fumarase family.</text>
    </comment>
    <dbReference type="EC" id="4.2.1.2" evidence="10"/>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX35292.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012204538.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_2654"/>
    <dbReference type="PRIDE" id="A9C1V7"/>
    <dbReference type="EnsemblBacteria" id="ABX35292">
        <property type="protein sequence ID" value="ABX35292"/>
        <property type="gene ID" value="Daci_2654"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_2654"/>
    <dbReference type="eggNOG" id="COG1838">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="eggNOG" id="COG1951">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_041245_2_0_4"/>
    <dbReference type="OMA" id="AGVLPMC"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051539">
        <property type="term" value="F:4 iron, 4 sulfur cluster binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004333">
        <property type="term" value="F:fumarate hydratase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006091">
        <property type="term" value="P:generation of precursor metabolites and energy"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.20.130.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004646">
        <property type="entry name" value="Fe-S_hydro-lyase_TtdA-typ_cat"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004647">
        <property type="entry name" value="Fe-S_hydro-lyase_TtdB-typ_cat"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036660">
        <property type="entry name" value="Fe-S_hydroAse_TtdB_cat_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011167">
        <property type="entry name" value="Fe_dep_fumarate_hydratase"/>
    </dbReference>
    <dbReference type="Pfam" id="PF05681">
        <property type="entry name" value="Fumerase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF05683">
        <property type="entry name" value="Fumerase_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF001394">
        <property type="entry name" value="Fe_dep_fumar_hy"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF117457">
        <property type="entry name" value="SSF117457"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00722">
        <property type="entry name" value="ttdA_fumA_fumB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00723">
        <property type="entry name" value="ttdB_fumA_fumB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5 10" id="KW-0004">4Fe-4S</keyword>
    <keyword evidence="7 10" id="KW-0408">Iron</keyword>
    <keyword evidence="8 10" id="KW-0411">Iron-sulfur</keyword>
    <keyword evidence="9 10 13" id="KW-0456">Lyase</keyword>
    <keyword evidence="6 10" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="14" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Fumerase" evidence="11">
        <location>
            <begin position="12"/>
            <end position="290"/>
        </location>
    </feature>
    <feature type="domain" description="Fumerase_C" evidence="12">
        <location>
            <begin position="294"/>
            <end position="494"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00000929"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00001966"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00008876"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00011738"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022485"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023004"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00023014"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00023239"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="PIRNR" id="PIRNR001394"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="11">
        <source>
            <dbReference type="Pfam" id="PF05681"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="12">
        <source>
            <dbReference type="Pfam" id="PF05683"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="13">
        <source>
            <dbReference type="EMBL" id="ABX35292.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="14">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="517" mass="55892" checksum="08F88B8A465B0BB5" modified="2008-01-15" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="50" xmlns="http://uniprot.org/uniprot">
    <accession>A9C1V9</accession>
    <name>A9C1V9_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Putative esterase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_2656</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX35294.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012204540.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_2656"/>
    <dbReference type="ESTHER" id="delas-a9c1v9">
        <property type="family name" value="A85-Feruloyl-Esterase"/>
    </dbReference>
    <dbReference type="PRIDE" id="A9C1V9"/>
    <dbReference type="EnsemblBacteria" id="ABX35294">
        <property type="protein sequence ID" value="ABX35294"/>
        <property type="gene ID" value="Daci_2656"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_2656"/>
    <dbReference type="eggNOG" id="COG0627">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_037618_1_1_4"/>
    <dbReference type="OMA" id="RWYIDCG"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.1820">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029058">
        <property type="entry name" value="AB_hydrolase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000801">
        <property type="entry name" value="Esterase-like"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00756">
        <property type="entry name" value="Esterase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53474">
        <property type="entry name" value="SSF53474"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="1">
        <location>
            <begin position="1"/>
            <end position="31"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5002732770" evidence="1">
        <location>
            <begin position="32"/>
            <end position="299"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX35294.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="299" mass="33467" checksum="63FFB7EE1393578B" modified="2008-01-15" version="1">MRQLSFSIVLRQAATGTLAAAALLAGTAAQAGSIEAAEFKSATLQRSWTYNVYLPTGYDAQSRLRYPVMYLLHGNDGQRNDWPVKGNLLRTVDQLIQNGEIPPAIIVMPDAGTTWYVDLKEPMETAFFQDLVPHVEKKYRTLTSRDGRVIGGLSMGGYGALRYVLKYPEKFQAAALLSPAIYNPEPPADSSARSVKVFAEPNTGGQYSTTVWKSYNYPVLWDSFLARKISVPMYINSGDDDEFMIESDAAQLYAQLRRNKQPAELRIVNGKHEWPVWESTIGDALKYVFRTVRRPQADN</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="66" xmlns="http://uniprot.org/uniprot">
    <accession>A9C213</accession>
    <name>A9C213_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">Antitoxin</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="4" type="ordered locus">Daci_3011</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="5" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="2">Antitoxin component of a type II toxin-antitoxin (TA) system.</text>
    </comment>
    <comment type="similarity">
        <text evidence="1 2">Belongs to the phD/YefM antitoxin family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX35649.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012204855.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_3011"/>
    <dbReference type="PRIDE" id="A9C213"/>
    <dbReference type="EnsemblBacteria" id="ABX35649">
        <property type="protein sequence ID" value="ABX35649"/>
        <property type="gene ID" value="Daci_3011"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_3011"/>
    <dbReference type="eggNOG" id="COG4118">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_163140_7_1_4"/>
    <dbReference type="OMA" id="MQTVGIY"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006442">
        <property type="entry name" value="Antitoxin_Phd/YefM"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036165">
        <property type="entry name" value="YefM-like_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02604">
        <property type="entry name" value="PhdYeFM_antitox"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF143120">
        <property type="entry name" value="SSF143120"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="3">
        <location>
            <begin position="65"/>
            <end position="92"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00009981"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="RuleBase" id="RU362080"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="ABX35649.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="92" mass="10376" checksum="35148D8C38D4BF37" modified="2008-01-15" version="1">MQSVGIYEAKTRFSALIELVEQGEEVRITRHGKEVVRMLPVRRRPVITDEQIARELEQMQALQATVRPAQPAQSAQAPDSTTRLRHAGRSQA</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="46" xmlns="http://uniprot.org/uniprot">
    <accession>A9C2D8</accession>
    <name>A9C2D8_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Phage tape measure protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ordered locus">Daci_3444</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="5" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX36082.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_3444"/>
    <dbReference type="PRIDE" id="A9C2D8"/>
    <dbReference type="EnsemblBacteria" id="ABX36082">
        <property type="protein sequence ID" value="ABX36082"/>
        <property type="gene ID" value="Daci_3444"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_3444"/>
    <dbReference type="eggNOG" id="COG2268">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="eggNOG" id="COG3941">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_320728_0_0_4"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013491">
        <property type="entry name" value="Tape_meas_N"/>
    </dbReference>
    <dbReference type="Pfam" id="PF20155">
        <property type="entry name" value="TMP_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR02675">
        <property type="entry name" value="tape_meas_nterm"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="TMP_3" evidence="3">
        <location>
            <begin position="42"/>
            <end position="225"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="847"/>
            <end position="867"/>
        </location>
    </feature>
    <feature type="coiled-coil region" evidence="1">
        <location>
            <begin position="425"/>
            <end position="491"/>
        </location>
    </feature>
    <feature type="coiled-coil region" evidence="1">
        <location>
            <begin position="733"/>
            <end position="760"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF20155"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="ABX36082.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="904" mass="95856" checksum="DFA65DC0E9B7E711" modified="2008-01-15" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="36" xmlns="http://uniprot.org/uniprot">
    <accession>A9C2F6</accession>
    <name>A9C2F6_DELAS</name>
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        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
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    </gene>
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        <lineage>
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            <taxon>Betaproteobacteria</taxon>
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                <person name="Fischer K."/>
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        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
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            <strain evidence="3">DSM 14801 / SPH-1</strain>
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    </reference>
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        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
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            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
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        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_3464"/>
    <dbReference type="PRIDE" id="A9C2F6"/>
    <dbReference type="EnsemblBacteria" id="ABX36100">
        <property type="protein sequence ID" value="ABX36100"/>
        <property type="gene ID" value="Daci_3464"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_3464"/>
    <dbReference type="eggNOG" id="ENOG5034698">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_1624429_0_0_4"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="141"/>
            <end position="163"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX36100.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="163" mass="17852" checksum="21AE0DC68C2FF4F1" modified="2008-01-15" version="1">MAQRPRISHCRCGFRRPTPASFKQVHARHSAAIKWHSVGPANMMCSFEEARRMKIVAALVVALGASSAFSADDPNTAVAAGIVRMSASMNEMALACKHMPSQKVDEAKAKQKSATLSDLKVSEADYEKLYSAAASDFKKKWSSMSAQQQQQSCDQMKKMPTKP</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2021-06-02" version="40" xmlns="http://uniprot.org/uniprot">
    <accession>A9C2F7</accession>
    <name>A9C2F7_DELAS</name>
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        <submittedName>
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        </submittedName>
    </protein>
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        <name evidence="2" type="ordered locus">Daci_3465</name>
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    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
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        <lineage>
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            <taxon>Betaproteobacteria</taxon>
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            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
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                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
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            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
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            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
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        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_3465"/>
    <dbReference type="EnsemblBacteria" id="ABX36101">
        <property type="protein sequence ID" value="ABX36101"/>
        <property type="gene ID" value="Daci_3465"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_3465"/>
    <dbReference type="eggNOG" id="COG0740">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_1831894_0_0_4"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029045">
        <property type="entry name" value="ClpP/crotonase-like_dom_sf"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52096">
        <property type="entry name" value="SSF52096"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="55"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="1"/>
            <end position="18"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="27"/>
            <end position="55"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX36101.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="140" mass="14942" checksum="D49AC5E155BA87D3" modified="2008-01-15" version="1">MTTSTPRVATSSRAWPSTPAARAQGKGDHPRAGRGRLGGFGDCHGRRRDPDGRWIVSDDPQRLAVAVGNRHDMTDTAAVLAPFDAAMAALYAHRSGIAEAEAAMLMDRETWIGAQQAVDDSFATGLLPSSEITRRAASQR</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-01-19" version="46" xmlns="http://uniprot.org/uniprot">
    <accession>A9C2H7</accession>
    <name>A9C2H7_DELAS</name>
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        <recommendedName>
            <fullName evidence="2">LprI domain-containing protein</fullName>
        </recommendedName>
    </protein>
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        <name evidence="3" type="ordered locus">Daci_3694</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
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        <lineage>
            <taxon>Bacteria</taxon>
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        </lineage>
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    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
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                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
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            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="4" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX36326.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012205522.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_3694"/>
    <dbReference type="EnsemblBacteria" id="ABX36326">
        <property type="protein sequence ID" value="ABX36326"/>
        <property type="gene ID" value="Daci_3694"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_3694"/>
    <dbReference type="eggNOG" id="COG3755">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_128596_2_0_4"/>
    <dbReference type="OMA" id="NACAVQA"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
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        <property type="entry name" value="LprI_N"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07007">
        <property type="entry name" value="LprI"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="1">
        <location>
            <begin position="1"/>
            <end position="30"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5002733291" description="LprI domain-containing protein" evidence="1">
        <location>
            <begin position="31"/>
            <end position="133"/>
        </location>
    </feature>
    <feature type="domain" description="LprI" evidence="2">
        <location>
            <begin position="36"/>
            <end position="127"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF07007"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ABX36326.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="133" mass="14472" checksum="CD8594C48F0FA45C" modified="2008-01-15" version="1">MRFPMTASLSRGLSAALLTALAALPLTLHAQAGAACDPASTAAASRNACAVQAFQEADTALNIRYLDVMQQLPQGKRTGLRHDQNGWIKGRTARCKAATRDSETQPEGPRLYHDCLTAATQERMQALERWLQH</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="81" xmlns="http://uniprot.org/uniprot">
    <accession>A9C2M8</accession>
    <name>A9C2M8_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Transcriptional regulator, MarR family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_3745</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
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        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
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                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
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            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX36377.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012205571.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_3745"/>
    <dbReference type="PRIDE" id="A9C2M8"/>
    <dbReference type="EnsemblBacteria" id="ABX36377">
        <property type="protein sequence ID" value="ABX36377"/>
        <property type="gene ID" value="Daci_3745"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_3745"/>
    <dbReference type="eggNOG" id="COG1846">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_083287_18_5_4"/>
    <dbReference type="OMA" id="GLTPFHW"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003700">
        <property type="term" value="F:DNA-binding transcription factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000835">
        <property type="entry name" value="HTH_MarR-typ"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036390">
        <property type="entry name" value="WH_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01047">
        <property type="entry name" value="MarR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00598">
        <property type="entry name" value="HTHMARR"/>
    </dbReference>
    <dbReference type="SMART" id="SM00347">
        <property type="entry name" value="HTH_MARR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46785">
        <property type="entry name" value="SSF46785"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50995">
        <property type="entry name" value="HTH_MARR_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HTH marR-type" evidence="1">
        <location>
            <begin position="24"/>
            <end position="156"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS50995"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX36377.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="178" mass="19472" checksum="9886A1910B9C801D" modified="2008-01-15" version="1">MTQPPLPNGLQPSDFYSPGSYTPFESVGFLMRKVLSSILQQADAQLAEHELTYVQWLPLYKLLLCSDATNAGMARDLGLDPASITRALDRLESKGMLRRERSTVDRRVVKLVLTDEGRAMAAKVPQVLSSVMNAHMAGFSHDESRQLLDMLRRLLTNGDAMRAPEAAPPAPAPATPVG</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="43" xmlns="http://uniprot.org/uniprot">
    <accession>A9C2M9</accession>
    <name>A9C2M9_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_3746</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX36378.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012205572.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="PRIDE" id="A9C2M9"/>
    <dbReference type="EnsemblBacteria" id="ABX36378">
        <property type="protein sequence ID" value="ABX36378"/>
        <property type="gene ID" value="Daci_3746"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_3746"/>
    <dbReference type="eggNOG" id="ENOG5031J36">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_166677_0_0_4"/>
    <dbReference type="OMA" id="LEMWHRA"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025421">
        <property type="entry name" value="DUF4148"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13663">
        <property type="entry name" value="DUF4148"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="1">
        <location>
            <begin position="1"/>
            <end position="25"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5002736238" evidence="1">
        <location>
            <begin position="26"/>
            <end position="104"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX36378.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="104" mass="11483" checksum="B8C2B05BE5C9C98A" modified="2008-01-15" version="1">MRTSDFTRFIALTALSLGLAGTALAQDATPSSTAAPTDLSRAQVLADLEMWHRAGLTYVSDREIDVRSTEYQRGLERYQQLRASPAYREAVARLEKGHAVAQDK</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="55" xmlns="http://uniprot.org/uniprot">
    <accession>A9C387</accession>
    <name>A9C387_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">ABC-2 type transporter</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_4569</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX37198.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012206368.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_4569"/>
    <dbReference type="PRIDE" id="A9C387"/>
    <dbReference type="EnsemblBacteria" id="ABX37198">
        <property type="protein sequence ID" value="ABX37198"/>
        <property type="gene ID" value="Daci_4569"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_4569"/>
    <dbReference type="eggNOG" id="COG0842">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_039483_10_1_4"/>
    <dbReference type="OMA" id="HIPSHFE"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="12"/>
            <end position="36"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="184"/>
            <end position="209"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="229"/>
            <end position="250"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="262"/>
            <end position="285"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="292"/>
            <end position="311"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="347"/>
            <end position="368"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX37198.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="377" mass="40748" checksum="99328D5481B37FE1" modified="2008-01-15" version="1">MARGFAHDFISALRAVFGDVGVLMLLVGAPVLYGFFYPWFYGQEVVQRVPVAVVQHDGSGLARQMLRFAQASPRIEVALVTGDEAQAQQALLDGRVMGYALLPRDLKRRVVRSEEAVVPVYANGAYPLAAKQVQYGFAEAFGTVSAGVELRRLTAGGQSALQAQASRSPVNLQMQALFNPTEGYGSFVVAAVAIIILQQTLLMGGALLVGTWREQGLDRAPARTWLARLLALCTLGWLSGLYYFGWIFVWHDYPRGGNPWGALALLAVFVPAVAGAAALLGWWLANRERAMQVVLFTSIPLAFVGGFSWPAEALPQLLQALRWLSPSTAAIQASLRLNQAGAPLEAALWHLSVLLALALLGWVAVLWLGSRRVDPGD</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2021-09-29" version="75" xmlns="http://uniprot.org/uniprot">
    <accession>A9BLF7</accession>
    <name>A9BLF7_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Transcriptional regulator, LysR family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Daci_3811</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="4" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the LysR transcriptional regulatory family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX36442.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012205636.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_3811"/>
    <dbReference type="EnsemblBacteria" id="ABX36442">
        <property type="protein sequence ID" value="ABX36442"/>
        <property type="gene ID" value="Daci_3811"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_3811"/>
    <dbReference type="eggNOG" id="COG0583">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_039613_6_0_4"/>
    <dbReference type="OMA" id="KCILPRA"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003700">
        <property type="term" value="F:DNA-binding transcription factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005119">
        <property type="entry name" value="LysR_subst-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000847">
        <property type="entry name" value="Tscrpt_reg_HTH_LysR"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036390">
        <property type="entry name" value="WH_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00126">
        <property type="entry name" value="HTH_1"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03466">
        <property type="entry name" value="LysR_substrate"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00039">
        <property type="entry name" value="HTHLYSR"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46785">
        <property type="entry name" value="SSF46785"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50931">
        <property type="entry name" value="HTH_LYSR"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HTH lysR-type" evidence="2">
        <location>
            <begin position="26"/>
            <end position="81"/>
        </location>
    </feature>
    <feature type="domain" description="HTH lysR-type" evidence="2">
        <location>
            <begin position="130"/>
            <end position="183"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00009437"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS50931"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ABX36442.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="426" mass="45341" checksum="A019D89BB07E20E1" modified="2008-01-15" version="1">MNLYLAPWTGPATSNPSHFPELAGHLRAMRAMLGVVRHGSTTRAAQAMHLSQPAVARSVLQLEEACGLPLFMRGARGMMPTPLGSQLAARIESMLQHLGSGAADAQAAATLAARRPPLPERFAETVPAGQLRALMAIADCGSESLAAQWLGLTQPAVHAALQGLETSLGMQLFYKLAFGTRLTPSGEALLRRVKLALAEVRGMDSDISAWRGEIRGRVVVGVLPLSVGIFLPRAVDSLAASHPDIEVSIVDGTYESLVQHLLSADIDAIAGALRADMPSDEVRQLHLFDDDLVVVAPAGHACLDRGQLVLEDLLQWPWVSPLPGTPADRAMVQLFRSQGLEPPRASLRASSPTMTLAFVLQTGRLALASRGQALQDDHGGQLSIVPVDLPSTRRRIGLATRALSTASQDLELFMQACRRAVGDPPA</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="83" xmlns="http://uniprot.org/uniprot">
    <accession>A9BLQ5</accession>
    <name>A9BLQ5_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="4">RNA polymerase, sigma-24 subunit, ECF subfamily</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ordered locus">Daci_4213</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="5" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the sigma-70 factor family. ECF subfamily.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX36844.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012206016.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_4213"/>
    <dbReference type="PRIDE" id="A9BLQ5"/>
    <dbReference type="EnsemblBacteria" id="ABX36844">
        <property type="protein sequence ID" value="ABX36844"/>
        <property type="gene ID" value="Daci_4213"/>
    </dbReference>
    <dbReference type="GeneID" id="60688465"/>
    <dbReference type="KEGG" id="dac:Daci_4213"/>
    <dbReference type="eggNOG" id="COG1595">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_047691_3_0_4"/>
    <dbReference type="OMA" id="EFQELSY"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016987">
        <property type="term" value="F:sigma factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006352">
        <property type="term" value="P:DNA-templated transcription, initiation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0050896">
        <property type="term" value="P:response to stimulus"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR039425">
        <property type="entry name" value="RNA_pol_sigma-70-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014284">
        <property type="entry name" value="RNA_pol_sigma-70_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007627">
        <property type="entry name" value="RNA_pol_sigma70_r2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013249">
        <property type="entry name" value="RNA_pol_sigma70_r4_t2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013325">
        <property type="entry name" value="RNA_pol_sigma_r2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013324">
        <property type="entry name" value="RNA_pol_sigma_r3/r4-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43133">
        <property type="entry name" value="PTHR43133"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04542">
        <property type="entry name" value="Sigma70_r2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08281">
        <property type="entry name" value="Sigma70_r4_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF88659">
        <property type="entry name" value="SSF88659"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF88946">
        <property type="entry name" value="SSF88946"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR02937">
        <property type="entry name" value="sigma70-ECF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Sigma70_r2" evidence="2">
        <location>
            <begin position="26"/>
            <end position="93"/>
        </location>
    </feature>
    <feature type="domain" description="Sigma70_r4_2" evidence="3">
        <location>
            <begin position="128"/>
            <end position="179"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00010641"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF04542"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF08281"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="ABX36844.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="202" mass="22175" checksum="20266B4045BFFA56" modified="2008-01-15" version="1">MAEIDDPDADLLARLARGEPQAARELVERKLPRLLGLAQRLLGNRAEAEEVAQEGLVRAWQQVGHWRPGQARFDTWLHEVVLNLCRDRLRRRAVRREEALDEHAEAAAFADPGPTPEQQLDHAQHSARVAAALDALPPRQREALVLHYYQALPQAEAAALMGVSVDALESLLARARRSLRARLQDASTSAIAAPADPGGSPP</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-01-19" version="36" xmlns="http://uniprot.org/uniprot">
    <accession>A9BLR9</accession>
    <name>A9BLR9_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_4227</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX36858.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012206030.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_4227"/>
    <dbReference type="EnsemblBacteria" id="ABX36858">
        <property type="protein sequence ID" value="ABX36858"/>
        <property type="gene ID" value="Daci_4227"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_4227"/>
    <dbReference type="eggNOG" id="ENOG5031605">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_1575899_0_0_4"/>
    <dbReference type="OMA" id="GHADHRW"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="1">
        <location>
            <begin position="1"/>
            <end position="26"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5002732895" evidence="1">
        <location>
            <begin position="27"/>
            <end position="170"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX36858.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="170" mass="18452" checksum="99241BE1E4A7FC25" modified="2008-01-15" version="1">MPRAERRGPRGAWKLLACAAAVVFMAACLDGVQGYPQQQAPIISPYDMTQEQRLAEMNAMGAAGHADHRWTYELRPGCVLRVDLDGPQGPRPSHDIALLGSVVAVTAQRERGSFRVELQPGDGLQAARSLVLESAKWADASWTQLLLRLMQKGCVEMQGLSHGRGAAGRH</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="36" xmlns="http://uniprot.org/uniprot">
    <accession>A9BLY3</accession>
    <name>A9BLY3_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Putative cytoplasmic protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Daci_4291</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="2" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX36922.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_4291"/>
    <dbReference type="PRIDE" id="A9BLY3"/>
    <dbReference type="EnsemblBacteria" id="ABX36922">
        <property type="protein sequence ID" value="ABX36922"/>
        <property type="gene ID" value="Daci_4291"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_4291"/>
    <dbReference type="eggNOG" id="ENOG5032PEH">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_131989_0_0_4"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025562">
        <property type="entry name" value="Tae4"/>
    </dbReference>
    <dbReference type="Pfam" id="PF14113">
        <property type="entry name" value="Tae4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ABX36922.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="173" mass="18971" checksum="23D15D2943BC7249" modified="2008-01-15" version="1">MIKPNFHRLWQEFPDHVRFKTMKDLYTELGGAAEKNIYLPGFGPNGNTCASRLSVAFNKAGAPINAALAGTAGARTLGTKDGSRIIYGVADFRSYLLKSLGKPSTDAVSPYDDKFRGLKGIIAFSVNWSGATGHIALWNGVHYREPGYDNYSTYTNPDNPSIKTSLGEFWELT</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="83" xmlns="http://uniprot.org/uniprot">
    <accession>A9BM30</accession>
    <name>A9BM30_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="12">Cyclic peptide transporter</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="12" type="ordered locus">Daci_4746</name>
    </gene>
    <organism evidence="12 13">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="12 13" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="13">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="13" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="13">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX37375.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012206545.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_4746"/>
    <dbReference type="PRIDE" id="A9BM30"/>
    <dbReference type="EnsemblBacteria" id="ABX37375">
        <property type="protein sequence ID" value="ABX37375"/>
        <property type="gene ID" value="Daci_4746"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_4746"/>
    <dbReference type="eggNOG" id="COG4615">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_023671_2_1_4"/>
    <dbReference type="OMA" id="INSRAIN"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0140359">
        <property type="term" value="F:ABC-type transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:1904680">
        <property type="term" value="F:peptide transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015833">
        <property type="term" value="P:peptide transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.1560.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003593">
        <property type="entry name" value="AAA+_ATPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011527">
        <property type="entry name" value="ABC1_TM_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036640">
        <property type="entry name" value="ABC1_TM_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003439">
        <property type="entry name" value="ABC_transporter-like_ATP-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005898">
        <property type="entry name" value="Cyc_pep_transpt"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43553:SF11">
        <property type="entry name" value="PTHR43553:SF11"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00664">
        <property type="entry name" value="ABC_membrane"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00005">
        <property type="entry name" value="ABC_tran"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00382">
        <property type="entry name" value="AAA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF90123">
        <property type="entry name" value="SSF90123"/>
        <property type="match status" value="1"/>
    </dbReference>
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</entry>
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</entry>
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        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
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</entry>
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                <person name="Kim E."/>
                <person name="Schleheck D."/>
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        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
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</entry>
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            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
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        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
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            <strain evidence="3">DSM 14801 / SPH-1</strain>
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    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX37517.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012206687.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_4888"/>
    <dbReference type="PRIDE" id="A9BMH2"/>
    <dbReference type="EnsemblBacteria" id="ABX37517">
        <property type="protein sequence ID" value="ABX37517"/>
        <property type="gene ID" value="Daci_4888"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_4888"/>
    <dbReference type="eggNOG" id="COG0526">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_090389_12_0_4"/>
    <dbReference type="OMA" id="YCQRAQP"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036249">
        <property type="entry name" value="Thioredoxin-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013766">
        <property type="entry name" value="Thioredoxin_domain"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00085">
        <property type="entry name" value="Thioredoxin"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52833">
        <property type="entry name" value="SSF52833"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51352">
        <property type="entry name" value="THIOREDOXIN_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Thioredoxin" evidence="1">
        <location>
            <begin position="1"/>
            <end position="108"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS51352"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX37517.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="110" mass="12036" checksum="3447293B11E48C4C" modified="2008-01-15" version="1">MPFQSKHLTDAPDRSTVDTLPGATLLEFGTAWCGHCQGAQPLIAQALEAAPQVAHIKVEDGPGRALGRSYRVKLWPTLIFLRDGQEVQRLVRPQQAREIADALARITAQP</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="64" xmlns="http://uniprot.org/uniprot">
    <accession>A9BMQ9</accession>
    <name>A9BMQ9_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="7">Major facilitator superfamily MFS_1</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ordered locus">Daci_4975</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="8" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX37604.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012206774.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_4975"/>
    <dbReference type="PRIDE" id="A9BMQ9"/>
    <dbReference type="EnsemblBacteria" id="ABX37604">
        <property type="protein sequence ID" value="ABX37604"/>
        <property type="gene ID" value="Daci_4975"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_4975"/>
    <dbReference type="eggNOG" id="COG2814">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_001265_46_6_4"/>
    <dbReference type="OMA" id="HWLLLTY"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0022857">
        <property type="term" value="F:transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.1250.20">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011701">
        <property type="entry name" value="MFS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020846">
        <property type="entry name" value="MFS_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036259">
        <property type="entry name" value="MFS_trans_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005829">
        <property type="entry name" value="Sugar_transporter_CS"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07690">
        <property type="entry name" value="MFS_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF103473">
        <property type="entry name" value="SSF103473"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50850">
        <property type="entry name" value="MFS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00216">
        <property type="entry name" value="SUGAR_TRANSPORT_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00217">
        <property type="entry name" value="SUGAR_TRANSPORT_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4 5" id="KW-0472">Membrane</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 5" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="3 5" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="66"/>
            <end position="84"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="96"/>
            <end position="115"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="121"/>
            <end position="143"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="155"/>
            <end position="178"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="184"/>
            <end position="203"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="242"/>
            <end position="262"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="282"/>
            <end position="299"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="306"/>
            <end position="325"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="331"/>
            <end position="357"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="369"/>
            <end position="388"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="394"/>
            <end position="418"/>
        </location>
    </feature>
    <feature type="domain" description="MFS" evidence="6">
        <location>
            <begin position="30"/>
            <end position="422"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="PROSITE" id="PS50850"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="ABX37604.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="429" mass="45965" checksum="905575D5B5C487BB" modified="2008-01-15" version="1">MTSLDNAKPLAGEQSQGSWLGQLEPREKRALTASFGGYAVDSFDYYTLPLVTPILLSLWGMSKTEVGLIGTSTLVASAIGGWMAGILADRYGRVRVLQWTILVFALFTFACGLAQTPGQLLLARTLQGLGFGGEWAVGSVLIAETIRPAFRGKAVGLVQSSWAIGWGAAVLVSMALFSFLPPEISWRAMFLLGLLPALLILFIRRSVKDPEVYLKTRAAVGRGERSGHFLDIFKGGMLKTTVLASLMFTGMQGGYYAIAVWLPTFLKNERHLTVLGSGGYQFMFIFGAFAGYLCGAYASDRLGRRLAFTLFAIGAGSLAYAYTLLPITDAWMLVLGFPLGFFMSGIFSGAGAFLAELFPNELRGSGQGFCYNFGRGIGATFPALVGVFSDRLGLSLGTAIGICATAGYVMVVMFAMCLPETRGRDLAAQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-01-19" version="58" xmlns="http://uniprot.org/uniprot">
    <accession>A9BMR9</accession>
    <name>A9BMR9_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">GCN5-related N-acetyltransferase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_4985</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX37614.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012206784.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_4985"/>
    <dbReference type="EnsemblBacteria" id="ABX37614">
        <property type="protein sequence ID" value="ABX37614"/>
        <property type="gene ID" value="Daci_4985"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_4985"/>
    <dbReference type="eggNOG" id="COG0456">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_013985_22_0_4"/>
    <dbReference type="OMA" id="LYIERWP"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008080">
        <property type="term" value="F:N-acetyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016181">
        <property type="entry name" value="Acyl_CoA_acyltransferase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000182">
        <property type="entry name" value="GNAT_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00583">
        <property type="entry name" value="Acetyltransf_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55729">
        <property type="entry name" value="SSF55729"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51186">
        <property type="entry name" value="GNAT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="N-acetyltransferase" evidence="1">
        <location>
            <begin position="18"/>
            <end position="170"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS51186"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX37614.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="174" mass="19766" checksum="75AAFA606CE4899F" modified="2008-01-15" version="1">MPSDPFVPELPPLYLEDVRLRLAEEADYAFLRALYRQVRAAELAPVPWSEAEKHAFCDSQFALQDQHYRKHYAHSAFFVIERAGLPIGRLYLNLAPGPLGVMDISLDAAVQGQGLGTALMQWLAGWADQEGRDMQLFVETNNPARRLYTRLGFVEQDQEGIYLRMRRTAALSRG</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="85" xmlns="http://uniprot.org/uniprot">
    <accession>A9BMV8</accession>
    <name>A9BMV8_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">Pseudouridine synthase</fullName>
            <ecNumber evidence="3">5.4.99.-</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="6" type="ordered locus">Daci_5024</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="7" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1 3">Belongs to the pseudouridine synthase RsuA family.</text>
    </comment>
    <dbReference type="EC" id="5.4.99.-" evidence="3"/>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX37653.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012206823.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_5024"/>
    <dbReference type="PRIDE" id="A9BMV8"/>
    <dbReference type="EnsemblBacteria" id="ABX37653">
        <property type="protein sequence ID" value="ABX37653"/>
        <property type="gene ID" value="Daci_5024"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_5024"/>
    <dbReference type="eggNOG" id="COG1187">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_024979_9_3_4"/>
    <dbReference type="OMA" id="MGSRLEM"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003723">
        <property type="term" value="F:RNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0120159">
        <property type="term" value="F:rRNA pseudouridine synthase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000455">
        <property type="term" value="P:enzyme-directed rRNA pseudouridine synthesis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="CDD" id="cd00165">
        <property type="entry name" value="S4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.10.290.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.70.1560">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.70.580">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR042092">
        <property type="entry name" value="PsdUridine_s_RsuA/RluB/E/F_cat"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020103">
        <property type="entry name" value="PsdUridine_synth_cat_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006145">
        <property type="entry name" value="PsdUridine_synth_RsuA/RluA"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000748">
        <property type="entry name" value="PsdUridine_synth_RsuA/RluB/E/F"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018496">
        <property type="entry name" value="PsdUridine_synth_RsuA/RluB_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002942">
        <property type="entry name" value="S4_RNA-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036986">
        <property type="entry name" value="S4_RNA-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020094">
        <property type="entry name" value="TruA/RsuA/RluB/E/F_N"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00849">
        <property type="entry name" value="PseudoU_synth_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01479">
        <property type="entry name" value="S4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00363">
        <property type="entry name" value="S4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55120">
        <property type="entry name" value="SSF55120"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00093">
        <property type="entry name" value="TIGR00093"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01149">
        <property type="entry name" value="PSI_RSU"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2 3" id="KW-0413">Isomerase</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="S4" evidence="5">
        <location>
            <begin position="113"/>
            <end position="169"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="4">
        <location>
            <begin position="1"/>
            <end position="80"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="4">
        <location>
            <begin position="350"/>
            <end position="467"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="4">
        <location>
            <begin position="436"/>
            <end position="454"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00008348"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023235"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="RuleBase" id="RU003887"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="SMART" id="SM00363"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="ABX37653.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="467" mass="49739" checksum="8B67423D01FED316" modified="2008-01-15" version="1">MTGSDISKDQDAQPASDEAGAQRKARPARTRAPKAGARPGAKPVRKPRPAAEAVHAEDTVQELVPADASESSDSGSVEGYGFADVISGELDAAEERDDAAPAKRVLLPQVDSPKLHKVLAQAGLGSRLEMEQLILEGRISVNNEPAHVGQRIQFGDQIKVNGQPIRFRIDPPPARVIAYHKPVGEVVTHDDPQNRPTVFRKLPRLQHGKWQSVGRLDLNTEGLLLFTSSGELANSLMHPRFGLEREYAARVLGALSKEEKQRLTDGVQLEDGVAAFGSIEDGGGEGANCWYRVTISEGRNREVRRMFEAVGHAVSRLIRIRYGAMVLPRGLKRGAWVELDQADIQSLASAAGMQARAPAAPKPPAGGRRGGPADRNTVRREGGGRYFDGNRPAPNAMLDGPRAKPAAKGGKADGGQGQGKGQGGAGGRGKGGGSQQPDPMRTSVGYIGSDSLSRARQNAKRKPGGRR</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="80" xmlns="http://uniprot.org/uniprot">
    <accession>A9BMY5</accession>
    <name>A9BMY5_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="5 9">2-dehydropantoate 2-reductase</fullName>
            <ecNumber evidence="4 9">1.1.1.169</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="8 9">Ketopantoate reductase</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="12" type="ordered locus">Daci_5051</name>
    </gene>
    <organism evidence="12 13">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="12 13" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="13">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="13" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="13">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="9">Catalyzes the NADPH-dependent reduction of ketopantoate into pantoic acid.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="9">
            <text>(R)-pantoate + NADP(+) = 2-dehydropantoate + H(+) + NADPH</text>
            <dbReference type="Rhea" id="RHEA:16233"/>
            <dbReference type="ChEBI" id="CHEBI:11561"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:15980"/>
            <dbReference type="ChEBI" id="CHEBI:57783"/>
            <dbReference type="ChEBI" id="CHEBI:58349"/>
            <dbReference type="EC" id="1.1.1.169"/>
        </reaction>
    </comment>
    <comment type="pathway">
        <text evidence="2 9">Cofactor biosynthesis; (R)-pantothenate biosynthesis; (R)-pantoate from 3-methyl-2-oxobutanoate: step 2/2.</text>
    </comment>
    <comment type="similarity">
        <text evidence="3 9">Belongs to the ketopantoate reductase family.</text>
    </comment>
    <dbReference type="EC" id="1.1.1.169" evidence="4 9"/>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX37680.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012206850.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_5051"/>
    <dbReference type="PRIDE" id="A9BMY5"/>
    <dbReference type="EnsemblBacteria" id="ABX37680">
        <property type="protein sequence ID" value="ABX37680"/>
        <property type="gene ID" value="Daci_5051"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_5051"/>
    <dbReference type="eggNOG" id="COG1893">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_031468_6_1_4"/>
    <dbReference type="OMA" id="AIWHKAG"/>
    <dbReference type="UniPathway" id="UPA00028">
        <property type="reaction ID" value="UER00004"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008677">
        <property type="term" value="F:2-dehydropantoate 2-reductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015940">
        <property type="term" value="P:pantothenate biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniPathway"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.1040.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008927">
        <property type="entry name" value="6-PGluconate_DH-like_C_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013328">
        <property type="entry name" value="6PGD_dom2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003710">
        <property type="entry name" value="ApbA"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013752">
        <property type="entry name" value="KPA_reductase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013332">
        <property type="entry name" value="KPR_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036291">
        <property type="entry name" value="NAD(P)-bd_dom_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02558">
        <property type="entry name" value="ApbA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08546">
        <property type="entry name" value="ApbA_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48179">
        <property type="entry name" value="SSF48179"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51735">
        <property type="entry name" value="SSF51735"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00745">
        <property type="entry name" value="apbA_panE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="7" id="KW-0520">NAD</keyword>
    <keyword evidence="9" id="KW-0521">NADP</keyword>
    <keyword evidence="9" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="6 9" id="KW-0566">Pantothenate biosynthesis</keyword>
    <keyword evidence="13" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="ApbA" evidence="10">
        <location>
            <begin position="17"/>
            <end position="163"/>
        </location>
    </feature>
    <feature type="domain" description="ApbA_C" evidence="11">
        <location>
            <begin position="186"/>
            <end position="306"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00000784"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00004994"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00007870"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00013014"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00019465"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022655"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023027"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00032024"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="RuleBase" id="RU362068"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="10">
        <source>
            <dbReference type="Pfam" id="PF02558"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="11">
        <source>
            <dbReference type="Pfam" id="PF08546"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="EMBL" id="ABX37680.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="13">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="325" mass="33442" checksum="BA91C367DEB139C6" modified="2008-01-15" version="1">MDASSASPSSPTAPLRIAVMGAGAVGCYFGALLARAGHQVTLIGRPAHVQAVQQHGLRLETAALDIQVPMQASTEASAVRDADVVMFCVKSTATEEAAREMQPHLAPGALVLTMQNGVDNDERVRAVLGPSVSVAAAVVYVATAMAGPGHVRHFGRGELVIAPSALSEQVARQFGAAGIAVQVSPDVRGALWAKLVINCAYNALSALCQLPYGPLVQAPGVAHVVDDVVAECLAVARADGVALPGDVPAAVRGLPATMPGQFSSTAQDLALGKPSEIDHLNGYVVRRGEALGVPVPLNRTLQVLVRLAPSRVQASQAPRNPPQNS</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="98" xmlns="http://uniprot.org/uniprot">
    <accession>A9BN36</accession>
    <name>A9BN36_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="4">Deoxyuridine 5'-triphosphate nucleotidohydrolase</fullName>
            <shortName evidence="4">dUTPase</shortName>
            <ecNumber evidence="4">3.6.1.23</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="4">dUTP pyrophosphatase</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="4" type="primary">dut</name>
        <name evidence="6" type="ordered locus">Daci_5102</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="7" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="4">This enzyme is involved in nucleotide metabolism: it produces dUMP, the immediate precursor of thymidine nucleotides and it decreases the intracellular concentration of dUTP so that uracil cannot be incorporated into DNA.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1 4">
            <text>dUTP + H2O = diphosphate + dUMP + H(+)</text>
            <dbReference type="Rhea" id="RHEA:10248"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:33019"/>
            <dbReference type="ChEBI" id="CHEBI:61555"/>
            <dbReference type="ChEBI" id="CHEBI:246422"/>
            <dbReference type="EC" id="3.6.1.23"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="4">
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </cofactor>
    </comment>
    <comment type="pathway">
        <text evidence="4">Pyrimidine metabolism; dUMP biosynthesis; dUMP from dCTP (dUTP route): step 2/2.</text>
    </comment>
    <comment type="similarity">
        <text evidence="4">Belongs to the dUTPase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="4">Lacks conserved residue(s) required for the propagation of feature annotation.</text>
    </comment>
    <dbReference type="EC" id="3.6.1.23" evidence="4"/>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX37731.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012206901.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_5102"/>
    <dbReference type="PRIDE" id="A9BN36"/>
    <dbReference type="EnsemblBacteria" id="ABX37731">
        <property type="protein sequence ID" value="ABX37731"/>
        <property type="gene ID" value="Daci_5102"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_5102"/>
    <dbReference type="eggNOG" id="COG0756">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_068508_1_1_4"/>
    <dbReference type="OMA" id="YAAFVHP"/>
    <dbReference type="UniPathway" id="UPA00610">
        <property type="reaction ID" value="UER00666"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004170">
        <property type="term" value="F:dUTP diphosphatase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000287">
        <property type="term" value="F:magnesium ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006226">
        <property type="term" value="P:dUMP biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniPathway"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046081">
        <property type="term" value="P:dUTP catabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd07557">
        <property type="entry name" value="trimeric_dUTPase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.70.40.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00116">
        <property type="entry name" value="dUTPase_bact"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008181">
        <property type="entry name" value="dUTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029054">
        <property type="entry name" value="dUTPase-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036157">
        <property type="entry name" value="dUTPase-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR033704">
        <property type="entry name" value="dUTPase_trimeric"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11241">
        <property type="entry name" value="PTHR11241"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00692">
        <property type="entry name" value="dUTPase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51283">
        <property type="entry name" value="SSF51283"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00576">
        <property type="entry name" value="dut"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2 4 6" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="4" id="KW-0460">Magnesium</keyword>
    <keyword evidence="4" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="3 4" id="KW-0546">Nucleotide metabolism</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="dUTPase" evidence="5">
        <location>
            <begin position="15"/>
            <end position="147"/>
        </location>
    </feature>
    <feature type="region of interest" description="Substrate binding" evidence="4">
        <location>
            <begin position="67"/>
            <end position="69"/>
        </location>
    </feature>
    <feature type="region of interest" description="Substrate binding" evidence="4">
        <location>
            <begin position="84"/>
            <end position="86"/>
        </location>
    </feature>
    <feature type="binding site" evidence="4">
        <location>
            <position position="80"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00000878"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023080"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00116"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="Pfam" id="PF00692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="ABX37731.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="149" mass="16110" checksum="274315E9909687A2" modified="2008-01-15" version="1">MNVDIKILDARLRENMPAYATPGSAGLDLRACIDAPLMLEPGQWQLVPTGMAMYLKDPGYAAMILPRSGMGHKHGIVLGNLVGLIDSDYQGQLMVSAWNRSTTAFTLQPMDRLAQLIIVPVVQPSFNVVEEFESTSERGAGGYGSTGKQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="53" xmlns="http://uniprot.org/uniprot">
    <accession>A9BN41</accession>
    <name>A9BN41_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">DUF1330 domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_5107</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX37736.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012206906.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_5107"/>
    <dbReference type="PRIDE" id="A9BN41"/>
    <dbReference type="EnsemblBacteria" id="ABX37736">
        <property type="protein sequence ID" value="ABX37736"/>
        <property type="gene ID" value="Daci_5107"/>
    </dbReference>
    <dbReference type="GeneID" id="60689456"/>
    <dbReference type="KEGG" id="dac:Daci_5107"/>
    <dbReference type="eggNOG" id="COG5470">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_145407_1_2_4"/>
    <dbReference type="OMA" id="QYTQRAP"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011008">
        <property type="entry name" value="Dimeric_a/b-barrel"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010753">
        <property type="entry name" value="DUF1330"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07045">
        <property type="entry name" value="DUF1330"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54909">
        <property type="entry name" value="SSF54909"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="DUF1330" evidence="1">
        <location>
            <begin position="3"/>
            <end position="96"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF07045"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX37736.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="96" mass="10835" checksum="215680557DD9E179" modified="2008-01-15" version="1">MASGYIIASVTVTKPEQYEEYRKWSTEAMRVHGAEVCVRGGKVEVLEGDWNPGRTVILKFPSFEAARAFYDTPEYLRAREAREGASIMRMVCVEGV</sequence>
</entry>
<entry dataset="Swiss-Prot" created="2009-04-14" modified="2022-08-03" version="77" xmlns="http://uniprot.org/uniprot">
    <accession>A9BNB9</accession>
    <name>RS15_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">30S ribosomal protein S15</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="1" type="primary">rpsO</name>
        <name type="ordered locus">Daci_5185</name>
    </gene>
    <organism>
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference key="1">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain>DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="1">One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it helps nucleate assembly of the platform of the 30S subunit by binding and bridging several RNA helices of the 16S rRNA.</text>
    </comment>
    <comment type="function">
        <text evidence="1">Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome.</text>
    </comment>
    <comment type="subunit">
        <text evidence="1">Part of the 30S ribosomal subunit. Forms a bridge to the 50S subunit in the 70S ribosome, contacting the 23S rRNA.</text>
    </comment>
    <comment type="similarity">
        <text evidence="1">Belongs to the universal ribosomal protein uS15 family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX37814.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012206984.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A9BNB9"/>
    <dbReference type="SMR" id="A9BNB9"/>
    <dbReference type="STRING" id="398578.Daci_5185"/>
    <dbReference type="PRIDE" id="A9BNB9"/>
    <dbReference type="EnsemblBacteria" id="ABX37814">
        <property type="protein sequence ID" value="ABX37814"/>
        <property type="gene ID" value="Daci_5185"/>
    </dbReference>
    <dbReference type="GeneID" id="60689536"/>
    <dbReference type="KEGG" id="dac:Daci_5185"/>
    <dbReference type="eggNOG" id="COG0184">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_148518_0_0_4"/>
    <dbReference type="OMA" id="FKTHVKD"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005840">
        <property type="term" value="C:ribosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0019843">
        <property type="term" value="F:rRNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003735">
        <property type="term" value="F:structural constituent of ribosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006412">
        <property type="term" value="P:translation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd00353">
        <property type="entry name" value="Ribosomal_S15p_S13e"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01343_B">
        <property type="entry name" value="Ribosomal_S15_B"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000589">
        <property type="entry name" value="Ribosomal_S15"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005290">
        <property type="entry name" value="Ribosomal_S15_bac-type"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009068">
        <property type="entry name" value="S15_NS1_RNA-bd"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR23321">
        <property type="entry name" value="PTHR23321"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00312">
        <property type="entry name" value="Ribosomal_S15"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM01387">
        <property type="entry name" value="Ribosomal_S15"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47060">
        <property type="entry name" value="SSF47060"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00952">
        <property type="entry name" value="S15_bact"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00362">
        <property type="entry name" value="RIBOSOMAL_S15"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword id="KW-1185">Reference proteome</keyword>
    <keyword id="KW-0687">Ribonucleoprotein</keyword>
    <keyword id="KW-0689">Ribosomal protein</keyword>
    <keyword id="KW-0694">RNA-binding</keyword>
    <keyword id="KW-0699">rRNA-binding</keyword>
    <feature type="chain" id="PRO_1000143102" description="30S ribosomal protein S15">
        <location>
            <begin position="1"/>
            <end position="88"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="1"/>
            <end position="23"/>
        </location>
    </feature>
    <evidence type="ECO:0000255" key="1">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01343"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <sequence length="88" mass="9906" checksum="45A7DBD0C70A1358" modified="2008-01-15" version="1">MIASSVKAEVVKSNARSANDTGSPEVQVALLTARINELTPHFKQHAKDHHGRRGLLRMVSRRRKLLDYLKSKDADRYTALIAKLGLRK</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2021-09-29" version="53" xmlns="http://uniprot.org/uniprot">
    <accession>A9BNC3</accession>
    <name>A9BNC3_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_5189</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX37818.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012206988.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_5189"/>
    <dbReference type="EnsemblBacteria" id="ABX37818">
        <property type="protein sequence ID" value="ABX37818"/>
        <property type="gene ID" value="Daci_5189"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_5189"/>
    <dbReference type="eggNOG" id="COG4966">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_932655_0_0_4"/>
    <dbReference type="OMA" id="LGQANSH"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043683">
        <property type="term" value="P:type IV pilus assembly"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012902">
        <property type="entry name" value="N_methyl_site"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR032092">
        <property type="entry name" value="PilW"/>
    </dbReference>
    <dbReference type="Pfam" id="PF16074">
        <property type="entry name" value="PilW"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00409">
        <property type="entry name" value="PROKAR_NTER_METHYL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="21"/>
            <end position="44"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX37818.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="291" mass="31241" checksum="D550346FB6DE3A6B" modified="2008-01-15" version="1">MKHTRIADATLVQPGQRGLSLVELLVGLLLGLLIIAVALGALMASRAVSGTVSDASHLQQQASHLFRVMGRQIRQAGSLRLLLSSAKKGTDTVDVADPVAFEASAQDFDPARDTILGLDAPGRAQYKLTVGYSNYTQPLHGSAIETSLQRNCLGQANSHNLILSRFALDARKNTLRCTGTPSAGAQPLAQNVANFQVRYLIQLPKGDARLQYVNAAAVGQDWSRVVAAEVCLVLFGIEVINMPADSRYTDCASSDGTAESIDMITLPAPRTRRLHMVFRSVYQLRSQGMAG</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="83" xmlns="http://uniprot.org/uniprot">
    <accession>A9BNK1</accession>
    <name>A9BNK1_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">RNA polymerase sigma factor</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="6" type="ordered locus">Daci_5267</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="7" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1 2">Belongs to the sigma-70 factor family. ECF subfamily.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX37896.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_5267"/>
    <dbReference type="PRIDE" id="A9BNK1"/>
    <dbReference type="EnsemblBacteria" id="ABX37896">
        <property type="protein sequence ID" value="ABX37896"/>
        <property type="gene ID" value="Daci_5267"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_5267"/>
    <dbReference type="eggNOG" id="COG1595">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_047691_3_0_4"/>
    <dbReference type="OMA" id="NAKAWLF"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016987">
        <property type="term" value="F:sigma factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006352">
        <property type="term" value="P:DNA-templated transcription, initiation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006950">
        <property type="term" value="P:response to stress"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR039425">
        <property type="entry name" value="RNA_pol_sigma-70-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014284">
        <property type="entry name" value="RNA_pol_sigma-70_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000838">
        <property type="entry name" value="RNA_pol_sigma70_ECF_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007627">
        <property type="entry name" value="RNA_pol_sigma70_r2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013249">
        <property type="entry name" value="RNA_pol_sigma70_r4_t2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014286">
        <property type="entry name" value="RNA_pol_sigma70_RpoE"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013325">
        <property type="entry name" value="RNA_pol_sigma_r2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013324">
        <property type="entry name" value="RNA_pol_sigma_r3/r4-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43133">
        <property type="entry name" value="PTHR43133"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04542">
        <property type="entry name" value="Sigma70_r2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08281">
        <property type="entry name" value="Sigma70_r4_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF88659">
        <property type="entry name" value="SSF88659"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF88946">
        <property type="entry name" value="SSF88946"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR02939">
        <property type="entry name" value="RpoE_Sigma70"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR02937">
        <property type="entry name" value="sigma70-ECF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01063">
        <property type="entry name" value="SIGMA70_ECF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0731">Sigma factor</keyword>
    <keyword evidence="2" id="KW-0804">Transcription</keyword>
    <keyword evidence="2" id="KW-0805">Transcription regulation</keyword>
    <feature type="domain" description="Sigma70_r2" evidence="4">
        <location>
            <begin position="46"/>
            <end position="110"/>
        </location>
    </feature>
    <feature type="domain" description="Sigma70_r4_2" evidence="5">
        <location>
            <begin position="155"/>
            <end position="206"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="3">
        <location>
            <begin position="120"/>
            <end position="142"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="3">
        <location>
            <begin position="122"/>
            <end position="136"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00010641"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="RuleBase" id="RU000716"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="Pfam" id="PF04542"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="Pfam" id="PF08281"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="ABX37896.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="223" mass="25336" checksum="FCB1155C3DF6A003" modified="2008-01-15" version="1">MTAPWPPRPVFTDFMTPPEFPPSSADSDLALVERTNAGDMRAFELLVIKYQRRIERLIGRMVRDVDLVPDIAQETFIRAYRALHQFRGDAQFYTWLYRIAVNTAKKALLDMKRSPLITESALHNGDDDDETSRVSQELTTEETPETILAAQEIAQAVNAAMEALPEDLRQAVTLREIEGLSYEEISNAMGCPIGTVRSRIFRAREAISARVKPLLERQSGKRW</sequence>
</entry>
<entry dataset="Swiss-Prot" created="2009-03-24" modified="2022-08-03" version="77" xmlns="http://uniprot.org/uniprot">
    <accession>A9BNK7</accession>
    <name>PLSX_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Phosphate acyltransferase</fullName>
            <ecNumber evidence="1">2.3.1.274</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="1">Acyl-ACP phosphotransacylase</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="1">Acyl-[acyl-carrier-protein]--phosphate acyltransferase</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="1">Phosphate-acyl-ACP acyltransferase</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="1" type="primary">plsX</name>
        <name type="ordered locus">Daci_5273</name>
    </gene>
    <organism>
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference key="1">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain>DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="1">Catalyzes the reversible formation of acyl-phosphate (acyl-PO(4)) from acyl-[acyl-carrier-protein] (acyl-ACP). This enzyme utilizes acyl-ACP as fatty acyl donor, but not acyl-CoA.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>a fatty acyl-[ACP] + phosphate = an acyl phosphate + holo-[ACP]</text>
            <dbReference type="Rhea" id="RHEA:42292"/>
            <dbReference type="Rhea" id="RHEA-COMP:9685"/>
            <dbReference type="Rhea" id="RHEA-COMP:14125"/>
            <dbReference type="ChEBI" id="CHEBI:43474"/>
            <dbReference type="ChEBI" id="CHEBI:59918"/>
            <dbReference type="ChEBI" id="CHEBI:64479"/>
            <dbReference type="ChEBI" id="CHEBI:138651"/>
            <dbReference type="EC" id="2.3.1.274"/>
        </reaction>
    </comment>
    <comment type="pathway">
        <text evidence="1">Lipid metabolism; phospholipid metabolism.</text>
    </comment>
    <comment type="subunit">
        <text evidence="1">Homodimer. Probably interacts with PlsY.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Cytoplasm</location>
        </subcellularLocation>
        <text evidence="1">Associated with the membrane possibly through PlsY.</text>
    </comment>
    <comment type="similarity">
        <text evidence="1">Belongs to the PlsX family.</text>
    </comment>
    <dbReference type="EC" id="2.3.1.274" evidence="1"/>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX37902.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012207071.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A9BNK7"/>
    <dbReference type="SMR" id="A9BNK7"/>
    <dbReference type="STRING" id="398578.Daci_5273"/>
    <dbReference type="PRIDE" id="A9BNK7"/>
    <dbReference type="EnsemblBacteria" id="ABX37902">
        <property type="protein sequence ID" value="ABX37902"/>
        <property type="gene ID" value="Daci_5273"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_5273"/>
    <dbReference type="eggNOG" id="COG0416">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_039379_1_0_4"/>
    <dbReference type="OMA" id="HGKSNAR"/>
    <dbReference type="UniPathway" id="UPA00085"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043811">
        <property type="term" value="F:phosphate:acyl-[acyl carrier protein] acyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006633">
        <property type="term" value="P:fatty acid biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008654">
        <property type="term" value="P:phospholipid biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00019">
        <property type="entry name" value="PlsX"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003664">
        <property type="entry name" value="FA_synthesis"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012281">
        <property type="entry name" value="Phospholipid_synth_PlsX-like"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30100">
        <property type="entry name" value="PTHR30100"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02504">
        <property type="entry name" value="FA_synthesis"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF002465">
        <property type="entry name" value="Phsphlp_syn_PlsX"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00182">
        <property type="entry name" value="plsX"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword id="KW-0963">Cytoplasm</keyword>
    <keyword id="KW-0444">Lipid biosynthesis</keyword>
    <keyword id="KW-0443">Lipid metabolism</keyword>
    <keyword id="KW-0594">Phospholipid biosynthesis</keyword>
    <keyword id="KW-1208">Phospholipid metabolism</keyword>
    <keyword id="KW-1185">Reference proteome</keyword>
    <keyword id="KW-0808">Transferase</keyword>
    <feature type="chain" id="PRO_1000089899" description="Phosphate acyltransferase">
        <location>
            <begin position="1"/>
            <end position="346"/>
        </location>
    </feature>
    <evidence type="ECO:0000255" key="1">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00019"/>
        </source>
    </evidence>
    <sequence length="346" mass="36333" checksum="5C9650F18DB6DD04" modified="2008-01-15" version="1">MITLAVDCMGGDHGPRVTLAACRQFLDSHSDARLLLVGQPDALAGFAHERASVVPASEVVGMDDPIEVALRRKKDSSMRVAIQQVKDGQAAAAVSAGNTGALMAISRYLLKTLDGIDRPAIAPQLPNAKGGATTVLDLGANVDCSAEHLLQFAVMGSALVSALNNEEAPSVGLLNIGEEQIKGSEVIKRAGELLRAAGKAGHLNFYGNVEGNDIFKGTTQVVVCDGFVGNVALKSSEGVASMISNALKQEFKRNIFTKMAAIVAYPVLTALMKRVDHRRHNGAALLGLRGLVFKSHGSADALAFEHALNRAYDAARNNLLDRVRTRISAALPLLLAAQSESGPSAP</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="95" xmlns="http://uniprot.org/uniprot">
    <accession>A9BNM1</accession>
    <name>A9BNM1_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="12">DNA polymerase IV</fullName>
            <shortName evidence="12">Pol IV</shortName>
            <ecNumber evidence="12">2.7.7.7</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="12" type="primary">dinB</name>
        <name evidence="15" type="ordered locus">Daci_5287</name>
    </gene>
    <organism evidence="15 16">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="15 16" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="16">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="16" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="16">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="12">Poorly processive, error-prone DNA polymerase involved in untargeted mutagenesis. Copies undamaged DNA at stalled replication forks, which arise in vivo from mismatched or misaligned primer ends. These misaligned primers can be extended by PolIV. Exhibits no 3'-5' exonuclease (proofreading) activity. May be involved in translesional synthesis, in conjunction with the beta clamp from PolIII.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="11 12">
            <text>a 2'-deoxyribonucleoside 5'-triphosphate + DNA(n) = diphosphate + DNA(n+1)</text>
            <dbReference type="Rhea" id="RHEA:22508"/>
            <dbReference type="Rhea" id="RHEA-COMP:17339"/>
            <dbReference type="Rhea" id="RHEA-COMP:17340"/>
            <dbReference type="ChEBI" id="CHEBI:33019"/>
            <dbReference type="ChEBI" id="CHEBI:61560"/>
            <dbReference type="ChEBI" id="CHEBI:173112"/>
            <dbReference type="EC" id="2.7.7.7"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="12">
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </cofactor>
        <text evidence="12">Binds 2 magnesium ions per subunit.</text>
    </comment>
    <comment type="subunit">
        <text evidence="12">Monomer.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="12">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="1 12">Belongs to the DNA polymerase type-Y family.</text>
    </comment>
    <dbReference type="EC" id="2.7.7.7" evidence="12"/>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX37916.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012207085.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_5287"/>
    <dbReference type="PRIDE" id="A9BNM1"/>
    <dbReference type="EnsemblBacteria" id="ABX37916">
        <property type="protein sequence ID" value="ABX37916"/>
        <property type="gene ID" value="Daci_5287"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_5287"/>
    <dbReference type="eggNOG" id="COG0389">
        <property type="taxonomic scope" value="Bacteria"/>
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    <dbReference type="HOGENOM" id="CLU_012348_1_0_4"/>
    <dbReference type="OMA" id="KVRRYDF"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
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        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
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        <property type="term" value="F:damaged DNA binding"/>
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        <property type="term" value="F:DNA-directed DNA polymerase activity"/>
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        <property type="project" value="UniProtKB-UniRule"/>
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        <property type="project" value="UniProtKB-UniRule"/>
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    <dbReference type="GO" id="GO:0006281">
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        <property type="project" value="UniProtKB-UniRule"/>
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    <dbReference type="GO" id="GO:0006261">
        <property type="term" value="P:DNA-templated DNA replication"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009432">
        <property type="term" value="P:SOS response"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="CDD" id="cd03586">
        <property type="entry name" value="PolY_Pol_IV_kappa"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.1490.100">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.70.270">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01113">
        <property type="entry name" value="DNApol_IV"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043502">
        <property type="entry name" value="DNA/RNA_pol_sf"/>
    </dbReference>
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        <property type="entry name" value="DNA_pol_Y-fam_lit_finger_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017961">
        <property type="entry name" value="DNA_pol_Y-fam_little_finger"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR022880">
        <property type="entry name" value="DNApol_IV"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR024728">
        <property type="entry name" value="PolY_HhH_motif"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043128">
        <property type="entry name" value="Rev_trsase/Diguanyl_cyclase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001126">
        <property type="entry name" value="UmuC"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00817">
        <property type="entry name" value="IMS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF11799">
        <property type="entry name" value="IMS_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF11798">
        <property type="entry name" value="IMS_HHH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF100879">
        <property type="entry name" value="SSF100879"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56672">
        <property type="entry name" value="SSF56672"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50173">
        <property type="entry name" value="UMUC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="12" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="7 12" id="KW-0227">DNA damage</keyword>
    <keyword evidence="10 12" id="KW-0234">DNA repair</keyword>
    <keyword evidence="5 12" id="KW-0235">DNA replication</keyword>
    <keyword evidence="12" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="9 12 15" id="KW-0239">DNA-directed DNA polymerase</keyword>
    <keyword evidence="8 12" id="KW-0460">Magnesium</keyword>
    <keyword evidence="6 12" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="2 12" id="KW-0515">Mutator protein</keyword>
    <keyword evidence="4 12 15" id="KW-0548">Nucleotidyltransferase</keyword>
    <keyword evidence="16" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 12 15" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="UmuC" evidence="14">
        <location>
            <begin position="30"/>
            <end position="241"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="13">
        <location>
            <begin position="1"/>
            <end position="26"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="13">
        <location>
            <begin position="1"/>
            <end position="19"/>
        </location>
    </feature>
    <feature type="active site" evidence="12">
        <location>
            <position position="159"/>
        </location>
    </feature>
    <feature type="binding site" evidence="12">
        <location>
            <position position="34"/>
        </location>
        <ligand>
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="12">
        <location>
            <position position="158"/>
        </location>
        <ligand>
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </ligand>
    </feature>
    <feature type="site" description="Substrate discrimination" evidence="12">
        <location>
            <position position="39"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00010945"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022457"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022695"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022705"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022763"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00022842"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00022932"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00023204"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="ARBA" id="ARBA00024632"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="12">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01113"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="13">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="14">
        <source>
            <dbReference type="PROSITE" id="PS50173"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="15">
        <source>
            <dbReference type="EMBL" id="ABX37916.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="16">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="437" mass="48201" checksum="ED5C872CE94280EE" modified="2008-01-15" version="1">MHSCRNNGGVPETTPTTPASPADAAPPRRIAHLDMDAFYASVELLRYPQLKGLPVVIGGGRRAHDEALDARYAGRLHEIPVDEFSRLKDYVGRGVITTATYPARQFGVGSAMGMMKAARLCPQAILLPVDFAEVRRFSRMFKEIIVSIAPLMEDRGVDEVYIDFTDVPGGQREGGRVLARLIQKTITDATGLTCSIGVAPNKLLAKMASEFNKPNGISIVQPDDLQAVIWPLACRKINGIGPKADAKLQSLGIQTIGELAKQSLPQLVQWFGRAYGNWLHGVSWGRDERPVVTHSEPVSMSRETTFERDLHAVRDRAELSAIFTDLCERLAQDLQRKGYMGRTVGIKLRYDDFKTATRDHTLELPMADAATLRRAAGQCLKRVPLAKRLRLLGVRVGNLVRTADWEATAHDPLAREQLLRGPAQPAPDSDPFTPQLF</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="63" xmlns="http://uniprot.org/uniprot">
    <accession>A9BPB0</accession>
    <name>A9BPB0_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">AMP-dependent synthetase and ligase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_0027</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX32674.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012201967.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_0027"/>
    <dbReference type="PRIDE" id="A9BPB0"/>
    <dbReference type="EnsemblBacteria" id="ABX32674">
        <property type="protein sequence ID" value="ABX32674"/>
        <property type="gene ID" value="Daci_0027"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_0027"/>
    <dbReference type="eggNOG" id="COG1022">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_000022_45_5_4"/>
    <dbReference type="OMA" id="IAKCPIV"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016874">
        <property type="term" value="F:ligase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.12780">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020845">
        <property type="entry name" value="AMP-binding_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000873">
        <property type="entry name" value="AMP-dep_Synth/Lig"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR042099">
        <property type="entry name" value="ANL_N_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00501">
        <property type="entry name" value="AMP-binding"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00455">
        <property type="entry name" value="AMP_BINDING"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0436">Ligase</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="AMP-binding" evidence="1">
        <location>
            <begin position="16"/>
            <end position="481"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF00501"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX32674.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="611" mass="67113" checksum="CDC813C7856FFA8B" modified="2008-01-15" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="68" xmlns="http://uniprot.org/uniprot">
    <accession>A9BPH5</accession>
    <name>A9BPH5_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Short-chain dehydrogenase/reductase SDR</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Daci_0196</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="2" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX32842.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_0196"/>
    <dbReference type="PRIDE" id="A9BPH5"/>
    <dbReference type="EnsemblBacteria" id="ABX32842">
        <property type="protein sequence ID" value="ABX32842"/>
        <property type="gene ID" value="Daci_0196"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_0196"/>
    <dbReference type="eggNOG" id="COG1028">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_010194_1_3_4"/>
    <dbReference type="OMA" id="EWGPQFG"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016491">
        <property type="term" value="F:oxidoreductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036291">
        <property type="entry name" value="NAD(P)-bd_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020904">
        <property type="entry name" value="Sc_DH/Rdtase_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002347">
        <property type="entry name" value="SDR_fam"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00081">
        <property type="entry name" value="GDHRDH"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00080">
        <property type="entry name" value="SDRFAMILY"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51735">
        <property type="entry name" value="SSF51735"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00061">
        <property type="entry name" value="ADH_SHORT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ABX32842.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="334" mass="35710" checksum="ED052519D1FBAD30" modified="2008-01-15" version="1">MIGEWRGAAFAGILGPDFFPTNTERGRQAMAQKMMQDKVVVVTGAGGGIGRDMALAMAAEGAKVVVNDIGTSTTGEGTDAGPAQKVVDEIKAAGGQAVANTDSVAEAASAGRIVQCAVDSFGRIDGVVNNAGILRDRFFHKMSLDEWDAVIKVHLYGSYYMSRAAANHFKEQESGAFVHMTSTSGLIGNLGQANYSAAKLGLTALSKSIALDMQKFNVRSNCIAPFAWSRMIGSIPTDTPEQQARVAKIQQMTPNKIAPLAVYLLSDAARDVNAQVFAVRNNEIFVMSQPRPLRSVHRSEGWSPQFIAEHGMPALKASFVPLDRSADVFSWDPV</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="83" xmlns="http://uniprot.org/uniprot">
    <accession>A9BPS4</accession>
    <name>A9BPS4_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="2 8">30S ribosomal protein S3</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="8" type="primary">rpsC</name>
        <name evidence="13" type="ordered locus">Daci_0397</name>
    </gene>
    <organism evidence="13 14">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="13 14" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="14">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="14" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="14">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="7 8">Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation.</text>
    </comment>
    <comment type="subunit">
        <text evidence="8">Part of the 30S ribosomal subunit. Forms a tight complex with proteins S10 and S14.</text>
    </comment>
    <comment type="similarity">
        <text evidence="1 8 10">Belongs to the universal ribosomal protein uS3 family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX33043.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012202335.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_0397"/>
    <dbReference type="PRIDE" id="A9BPS4"/>
    <dbReference type="EnsemblBacteria" id="ABX33043">
        <property type="protein sequence ID" value="ABX33043"/>
        <property type="gene ID" value="Daci_0397"/>
    </dbReference>
    <dbReference type="GeneID" id="60690804"/>
    <dbReference type="KEGG" id="dac:Daci_0397"/>
    <dbReference type="eggNOG" id="COG0092">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_058591_0_2_4"/>
    <dbReference type="OMA" id="KTNPIGN"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005840">
        <property type="term" value="C:ribosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003729">
        <property type="term" value="F:mRNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0019843">
        <property type="term" value="F:rRNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003735">
        <property type="term" value="F:structural constituent of ribosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006412">
        <property type="term" value="P:translation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.1140.32">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.300.20">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01309_B">
        <property type="entry name" value="Ribosomal_S3_B"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004087">
        <property type="entry name" value="KH_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015946">
        <property type="entry name" value="KH_dom-like_a/b"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004044">
        <property type="entry name" value="KH_dom_type_2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009019">
        <property type="entry name" value="KH_sf_prok-type"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005704">
        <property type="entry name" value="Ribosomal_S3_bac-typ"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001351">
        <property type="entry name" value="Ribosomal_S3_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036419">
        <property type="entry name" value="Ribosomal_S3_C_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018280">
        <property type="entry name" value="Ribosomal_S3_CS"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07650">
        <property type="entry name" value="KH_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00189">
        <property type="entry name" value="Ribosomal_S3_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00322">
        <property type="entry name" value="KH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54814">
        <property type="entry name" value="SSF54814"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54821">
        <property type="entry name" value="SSF54821"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01009">
        <property type="entry name" value="rpsC_bact"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50823">
        <property type="entry name" value="KH_TYPE_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00548">
        <property type="entry name" value="RIBOSOMAL_S3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="14" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="6 8 10" id="KW-0687">Ribonucleoprotein</keyword>
    <keyword evidence="5 8 10" id="KW-0689">Ribosomal protein</keyword>
    <keyword evidence="4 8 9" id="KW-0694">RNA-binding</keyword>
    <keyword evidence="3 8" id="KW-0699">rRNA-binding</keyword>
    <feature type="domain" description="KH type-2" evidence="12">
        <location>
            <begin position="39"/>
            <end position="107"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="11">
        <location>
            <begin position="210"/>
            <end position="290"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="11">
        <location>
            <begin position="216"/>
            <end position="246"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="11">
        <location>
            <begin position="269"/>
            <end position="283"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00010761"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00016776"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022730"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022884"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022980"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023274"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00024998"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01309"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00118"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="RuleBase" id="RU003624"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="12">
        <source>
            <dbReference type="PROSITE" id="PS50823"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="13">
        <source>
            <dbReference type="EMBL" id="ABX33043.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="14">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="290" mass="31880" checksum="DCC062FCF2455A62" modified="2008-01-15" version="1">MGQKIHPTGFRLAVSRNWASRWYASNRDFAGMLAEDIKVREFLKAKLKNAAVSRILIERPAKNARITIFSARPGVVIGKKGEDIENLKKELATRLGVPVAVNIEEVRKPEIDAKLIADSICQQLEKRIMFRRAMKRAMQNAMRLGAQGIKIMSSGRLNGIEIARCEWYREGRVPLHTLRADIDYGFSEAKTTYGVIGVKVWVYKGDTLGRNDLPAAETPRPEEERRPRGPRRDGRGDGRRDGAGRGARRPAGANAAPADGSDKPAGAGADSVKRVRKTDAPATAADGKGE</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="57" xmlns="http://uniprot.org/uniprot">
    <accession>A9BQ03</accession>
    <name>A9BQ03_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Extracellular ligand-binding receptor</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Daci_0572</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="4" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX33218.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012202504.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_0572"/>
    <dbReference type="PRIDE" id="A9BQ03"/>
    <dbReference type="EnsemblBacteria" id="ABX33218">
        <property type="protein sequence ID" value="ABX33218"/>
        <property type="gene ID" value="Daci_0572"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_0572"/>
    <dbReference type="eggNOG" id="COG0683">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_027128_0_1_4"/>
    <dbReference type="OMA" id="CEGTYLP"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR028081">
        <property type="entry name" value="Leu-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR028082">
        <property type="entry name" value="Peripla_BP_I"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13458">
        <property type="entry name" value="Peripla_BP_6"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53822">
        <property type="entry name" value="SSF53822"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-0675">Receptor</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="1">
        <location>
            <begin position="1"/>
            <end position="23"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5002732990" evidence="1">
        <location>
            <begin position="24"/>
            <end position="383"/>
        </location>
    </feature>
    <feature type="domain" description="Peripla_BP_6" evidence="2">
        <location>
            <begin position="25"/>
            <end position="376"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF13458"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ABX33218.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="383" mass="40194" checksum="ABC67782A318F8AB" modified="2008-01-15" version="1">MKRLTKLGLLAATLATVWGSALADINVGVVVSATGPAASLGIPEKNTVALMPRTVAGQKVNYIILDDASDTTAAVANTRKLISESKVDVILGSSITPNSLAMVDVVSEAKTPMITLAASAKIVEPVDAKKFWVFKTPQHDAMMAAAIGEHMAKAGIKTVGYIGFNDAYGESWLQEFRKVAEAKGLKLTATEAYSRSDTSVTGQTLKLMSAKPDAVLIAGSGTPAALPQKSLKERGYQGKIYQTHGVANADFLRVGGKDVEGTLLPAGPVLVAHQLPDSNPVKKSAVSYVEAYEAANGKGTASTFGAHSWDAGRVLEAAIPAALKKAQPGTAEFRAALRDALEQTKDVAGAHGIFNMTPTDHLGLDQRAAVMVKIENGTWKYQP</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="54" xmlns="http://uniprot.org/uniprot">
    <accession>A9BQ40</accession>
    <name>A9BQ40_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Methyltransferase type 11</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_0609</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX33255.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_0609"/>
    <dbReference type="EnsemblBacteria" id="ABX33255">
        <property type="protein sequence ID" value="ABX33255"/>
        <property type="gene ID" value="Daci_0609"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_0609"/>
    <dbReference type="eggNOG" id="COG2227">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_1248944_0_0_4"/>
    <dbReference type="OMA" id="SPHEKIM"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008168">
        <property type="term" value="F:methyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0032259">
        <property type="term" value="P:methylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.150">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013216">
        <property type="entry name" value="Methyltransf_11"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029063">
        <property type="entry name" value="SAM-dependent_MTases_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08241">
        <property type="entry name" value="Methyltransf_11"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53335">
        <property type="entry name" value="SSF53335"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0489">Methyltransferase</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Methyltransf_11" evidence="1">
        <location>
            <begin position="48"/>
            <end position="140"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF08241"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX33255.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="221" mass="25110" checksum="128FD192C837F4C8" modified="2008-01-15" version="1">MQKKDYSLKSGERYSTLDLNLIGGDHLLRYKYAANRAKEIYASPYGADIFCGSGYGAEILAETTQGNILAIDGSLEAIENASNKILSPNIIWAAKLFPFNLPKNTFDFITSMESLEHVKDFEAFFWVLSQSLKIGGTLFISSPHEKIMPYNGYIWHYKHFLPEEIRDLAKSNNLIEINSFSTNSSILKDGKSCLFYPFQISNDQPVELNKGDTLFFEFRKN</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="62" xmlns="http://uniprot.org/uniprot">
    <accession>A9BQ75</accession>
    <name>A9BQ75_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="8">Flagellar protein FliL</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="10" type="ordered locus">Daci_0644</name>
    </gene>
    <organism evidence="10 11">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="10 11" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="11">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="11" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="11">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="1 8">Controls the rotational direction of flagella during chemotaxis.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="8">Cell inner membrane</location>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="2">Membrane</location>
            <topology evidence="2">Single-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="3 8">Belongs to the FliL family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX33290.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012202576.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_0644"/>
    <dbReference type="PRIDE" id="A9BQ75"/>
    <dbReference type="EnsemblBacteria" id="ABX33290">
        <property type="protein sequence ID" value="ABX33290"/>
        <property type="gene ID" value="Daci_0644"/>
    </dbReference>
    <dbReference type="GeneID" id="60690985"/>
    <dbReference type="KEGG" id="dac:Daci_0644"/>
    <dbReference type="eggNOG" id="COG1580">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_099018_0_0_4"/>
    <dbReference type="OMA" id="YWRMQQH"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009425">
        <property type="term" value="C:bacterial-type flagellum basal body"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0071973">
        <property type="term" value="P:bacterial-type flagellum-dependent cell motility"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006935">
        <property type="term" value="P:chemotaxis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005503">
        <property type="entry name" value="FliL"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR35091">
        <property type="entry name" value="PTHR35091"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03748">
        <property type="entry name" value="FliL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="8" id="KW-0997">Cell inner membrane</keyword>
    <keyword evidence="4" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="10" id="KW-0966">Cell projection</keyword>
    <keyword evidence="8" id="KW-0145">Chemotaxis</keyword>
    <keyword evidence="10" id="KW-0969">Cilium</keyword>
    <keyword evidence="8" id="KW-0283">Flagellar rotation</keyword>
    <keyword evidence="10" id="KW-0282">Flagellum</keyword>
    <keyword evidence="7 8" id="KW-0472">Membrane</keyword>
    <keyword evidence="11" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="5 8" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="6 8" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="21"/>
            <end position="42"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="9">
        <location>
            <begin position="147"/>
            <end position="178"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="9">
        <location>
            <begin position="153"/>
            <end position="176"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00002254"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00004167"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00008281"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="RuleBase" id="RU364125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="EMBL" id="ABX33290.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="191" mass="20395" checksum="4B146A18D4ED0477" modified="2008-01-15" version="1">MSATPNAANNAAPAPAKGKKLIVLIVIIAVLAIGAAAAFILLSKRHSSGDEEEGSASKAAVTVPTFLPLDNLVVNLSDTGGDRFVQIGITLELADEKTATTVKQYLPSIRNGILMLVSQRTAEELLEREGKERLAADVLNEVSAPLGYGNQAKAKKRSRDEDAEDEDGERRRSSAGKNPVRRVLFSSFIIQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="90" xmlns="http://uniprot.org/uniprot">
    <accession>A9BQA4</accession>
    <name>A9BQA4_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">Succinate--CoA ligase [ADP-forming] subunit alpha</fullName>
            <ecNumber evidence="2">6.2.1.5</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="2">Succinyl-CoA synthetase subunit alpha</fullName>
            <shortName evidence="2">SCS-alpha</shortName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="2" type="primary">sucD</name>
        <name evidence="7" type="ordered locus">Daci_0868</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="8" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="2 5">Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The alpha subunit of the enzyme binds the substrates coenzyme A and phosphate, while succinate binding and nucleotide specificity is provided by the beta subunit.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="2 5">
            <text>ATP + CoA + succinate = ADP + phosphate + succinyl-CoA</text>
            <dbReference type="Rhea" id="RHEA:17661"/>
            <dbReference type="ChEBI" id="CHEBI:30031"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:43474"/>
            <dbReference type="ChEBI" id="CHEBI:57287"/>
            <dbReference type="ChEBI" id="CHEBI:57292"/>
            <dbReference type="ChEBI" id="CHEBI:456216"/>
            <dbReference type="EC" id="6.2.1.5"/>
        </reaction>
    </comment>
    <comment type="pathway">
        <text evidence="2 5">Carbohydrate metabolism; tricarboxylic acid cycle; succinate from succinyl-CoA (ligase route): step 1/1.</text>
    </comment>
    <comment type="subunit">
        <text evidence="2 5">Heterotetramer of two alpha and two beta subunits.</text>
    </comment>
    <comment type="similarity">
        <text evidence="2 4">Belongs to the succinate/malate CoA ligase alpha subunit family.</text>
    </comment>
    <dbReference type="EC" id="6.2.1.5" evidence="2"/>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX33514.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012202800.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_0868"/>
    <dbReference type="PRIDE" id="A9BQA4"/>
    <dbReference type="EnsemblBacteria" id="ABX33514">
        <property type="protein sequence ID" value="ABX33514"/>
        <property type="gene ID" value="Daci_0868"/>
    </dbReference>
    <dbReference type="GeneID" id="60685435"/>
    <dbReference type="KEGG" id="dac:Daci_0868"/>
    <dbReference type="eggNOG" id="COG0074">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_052104_0_0_4"/>
    <dbReference type="OMA" id="VIICITE"/>
    <dbReference type="UniPathway" id="UPA00223">
        <property type="reaction ID" value="UER00999"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000166">
        <property type="term" value="F:nucleotide binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004775">
        <property type="term" value="F:succinate-CoA ligase (ADP-forming) activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006099">
        <property type="term" value="P:tricarboxylic acid cycle"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.261">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01988">
        <property type="entry name" value="Succ_CoA_alpha"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017440">
        <property type="entry name" value="Cit_synth/succinyl-CoA_lig_AS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR033847">
        <property type="entry name" value="Citrt_syn/SCS-alpha_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003781">
        <property type="entry name" value="CoA-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005810">
        <property type="entry name" value="CoA_lig_alpha"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005811">
        <property type="entry name" value="CoA_ligase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036291">
        <property type="entry name" value="NAD(P)-bd_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016102">
        <property type="entry name" value="Succinyl-CoA_synth-like"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02629">
        <property type="entry name" value="CoA_binding"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00549">
        <property type="entry name" value="Ligase_CoA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF001553">
        <property type="entry name" value="SucCS_alpha"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00881">
        <property type="entry name" value="CoA_binding"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51735">
        <property type="entry name" value="SSF51735"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52210">
        <property type="entry name" value="SSF52210"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01019">
        <property type="entry name" value="sucCoAalpha"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01216">
        <property type="entry name" value="SUCCINYL_COA_LIG_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00399">
        <property type="entry name" value="SUCCINYL_COA_LIG_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2 4" id="KW-0436">Ligase</keyword>
    <keyword evidence="1 2 5" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 5" id="KW-0816">Tricarboxylic acid cycle</keyword>
    <feature type="domain" description="CoA_binding" evidence="6">
        <location>
            <begin position="4"/>
            <end position="103"/>
        </location>
    </feature>
    <feature type="region of interest" description="Coenzyme A binding" evidence="2">
        <location>
            <begin position="17"/>
            <end position="20"/>
        </location>
    </feature>
    <feature type="region of interest" description="Coenzyme A binding" evidence="2">
        <location>
            <begin position="99"/>
            <end position="101"/>
        </location>
    </feature>
    <feature type="active site" description="Tele-phosphohistidine intermediate" evidence="2 3">
        <location>
            <position position="256"/>
        </location>
    </feature>
    <feature type="binding site" evidence="2">
        <location>
            <position position="46"/>
        </location>
        <ligand>
            <name>CoA</name>
            <dbReference type="ChEBI" id="CHEBI:57287"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="2">
        <location>
            <position position="168"/>
        </location>
        <ligand>
            <name>substrate</name>
            <note>ligand shared with subunit beta</note>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01988"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="PIRSR" id="PIRSR001553-1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="RuleBase" id="RU000677"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="RuleBase" id="RU000699"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="SMART" id="SM00881"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="ABX33514.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="297" mass="31105" checksum="EC4185368F3E87F6" modified="2008-01-15" version="1">MSIYINKDTKVITQGITGKTGQFHTEKCIEYANGKNCFVAGVNPKKAGEKIFDVPIYASVKEAAQGTGATVSVIYVPPAGAAAAIWEAVEADLDLAICITEGIPVRDMLEVRNKMRAKEAAGGKRTLLLGPNCPGLITPDEIKIGIMPGHIHKKGRIGVVSRSGTLTYEAVAQLTELGIGQSSAVGIGGDPINGLKHIDVMKAFNDDPDTDAVIMIGEIGGPDEAEAARWCKDNMKKPIVGFIAGVTAPPGKRMGHAGALISGGADTADAKLAIMEECGFVITRNPSEMGRLLKGLI</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="63" xmlns="http://uniprot.org/uniprot">
    <accession>A9BQE0</accession>
    <name>A9BQE0_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="6">Porin Gram-negative type</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ordered locus">Daci_0904</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="7" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX33550.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012202836.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_0904"/>
    <dbReference type="PRIDE" id="A9BQE0"/>
    <dbReference type="EnsemblBacteria" id="ABX33550">
        <property type="protein sequence ID" value="ABX33550"/>
        <property type="gene ID" value="Daci_0904"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_0904"/>
    <dbReference type="eggNOG" id="COG3203">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_038238_2_0_4"/>
    <dbReference type="OMA" id="AHYTFGE"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046930">
        <property type="term" value="C:pore complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015288">
        <property type="term" value="F:porin activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006811">
        <property type="term" value="P:ion transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd00342">
        <property type="entry name" value="gram_neg_porins"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.160.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR033900">
        <property type="entry name" value="Gram_neg_porin_domain"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023614">
        <property type="entry name" value="Porin_dom_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13609">
        <property type="entry name" value="Porin_4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0406">Ion transport</keyword>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-0626">Porin</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4" id="KW-0732">Signal</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1134">Transmembrane beta strand</keyword>
    <keyword evidence="3" id="KW-0813">Transport</keyword>
    <feature type="signal peptide" evidence="4">
        <location>
            <begin position="1"/>
            <end position="24"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5002734973" evidence="4">
        <location>
            <begin position="25"/>
            <end position="360"/>
        </location>
    </feature>
    <feature type="domain" description="Porin_4" evidence="5">
        <location>
            <begin position="10"/>
            <end position="337"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022452"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023065"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023114"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="Pfam" id="PF13609"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="ABX33550.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="360" mass="37388" checksum="063654249EAB1B9E" modified="2008-01-15" version="1">MKKNNIALALALLATGCAAGPALAQSTSSVSLYGIIDVSVRAQSGLSGANAPAAGSMGSVNSGVGPTSRWGIRGSEDLGGGLRAIFNLESTLGADVGGIGGVAGTFDRAAIVGLAGHWGAVTAGRQNTLISDSVGLVDPIALRFAGLNPNIQVTSLTGHGLNNEWGATNTKVGSNRVNNSIKYSGSFGGLTARAMYSFGETGVSASRLDTRGLGLDWRQDDLVLTSAYTQFHDASGRTLDAANIGGAWSRGDLRLMLNYGRNKAETSDTAKTTNKILALGARYAVTPVIGLNGGYYKVDRERTGQGDDGFQRLIGFVDYQLSKRTSLFLELDTTKWKNGYQGAGNKTRASGISLGITHNF</sequence>
</entry>
<entry dataset="Swiss-Prot" created="2009-03-24" modified="2022-08-03" version="65" xmlns="http://uniprot.org/uniprot">
    <accession>A9BQN8</accession>
    <name>MINE_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Cell division topological specificity factor</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="1" type="primary">minE</name>
        <name type="ordered locus">Daci_0093</name>
    </gene>
    <organism>
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference key="1">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain>DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="1">Prevents the cell division inhibition by proteins MinC and MinD at internal division sites while permitting inhibition at polar sites. This ensures cell division at the proper site by restricting the formation of a division septum at the midpoint of the long axis of the cell.</text>
    </comment>
    <comment type="similarity">
        <text evidence="1">Belongs to the MinE family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX32740.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012202033.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A9BQN8"/>
    <dbReference type="SMR" id="A9BQN8"/>
    <dbReference type="STRING" id="398578.Daci_0093"/>
    <dbReference type="PRIDE" id="A9BQN8"/>
    <dbReference type="EnsemblBacteria" id="ABX32740">
        <property type="protein sequence ID" value="ABX32740"/>
        <property type="gene ID" value="Daci_0093"/>
    </dbReference>
    <dbReference type="GeneID" id="60690497"/>
    <dbReference type="KEGG" id="dac:Daci_0093"/>
    <dbReference type="eggNOG" id="COG0851">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_137929_2_1_4"/>
    <dbReference type="OMA" id="QIIVARE"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0007049">
        <property type="term" value="P:cell cycle"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051301">
        <property type="term" value="P:cell division"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0032955">
        <property type="term" value="P:regulation of division septum assembly"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.1070.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00262">
        <property type="entry name" value="MinE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005527">
        <property type="entry name" value="MinE"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036707">
        <property type="entry name" value="MinE_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03776">
        <property type="entry name" value="MinE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55229">
        <property type="entry name" value="SSF55229"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01215">
        <property type="entry name" value="minE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword id="KW-0131">Cell cycle</keyword>
    <keyword id="KW-0132">Cell division</keyword>
    <keyword id="KW-1185">Reference proteome</keyword>
    <feature type="chain" id="PRO_1000114216" description="Cell division topological specificity factor">
        <location>
            <begin position="1"/>
            <end position="87"/>
        </location>
    </feature>
    <evidence type="ECO:0000255" key="1">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00262"/>
        </source>
    </evidence>
    <sequence length="87" mass="9719" checksum="62D0C5FFD9BFC9E4" modified="2008-01-15" version="1">MSMLSFLLGEKKKTASVAKERLQIILARERVGGNGGGPDYLPALQKELMAVISKYVDIDVNDIKVHLERQENLEVLEVKIELPDASR</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="67" xmlns="http://uniprot.org/uniprot">
    <accession>A9BQT3</accession>
    <name>A9BQT3_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">EF-hand domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="4" type="ordered locus">Daci_0139</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="5" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX32785.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012202078.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_0139"/>
    <dbReference type="PRIDE" id="A9BQT3"/>
    <dbReference type="EnsemblBacteria" id="ABX32785">
        <property type="protein sequence ID" value="ABX32785"/>
        <property type="gene ID" value="Daci_0139"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_0139"/>
    <dbReference type="eggNOG" id="COG5126">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_091273_3_0_4"/>
    <dbReference type="OMA" id="EYIGEYE"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005509">
        <property type="term" value="F:calcium ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011992">
        <property type="entry name" value="EF-hand-dom_pair"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018247">
        <property type="entry name" value="EF_Hand_1_Ca_BS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002048">
        <property type="entry name" value="EF_hand_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13202">
        <property type="entry name" value="EF-hand_5"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47473">
        <property type="entry name" value="SSF47473"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00018">
        <property type="entry name" value="EF_HAND_1"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50222">
        <property type="entry name" value="EF_HAND_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="2">
        <location>
            <begin position="1"/>
            <end position="24"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5002735932" description="EF-hand domain-containing protein" evidence="2">
        <location>
            <begin position="25"/>
            <end position="162"/>
        </location>
    </feature>
    <feature type="domain" description="EF-hand" evidence="3">
        <location>
            <begin position="134"/>
            <end position="162"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="26"/>
            <end position="47"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="PROSITE" id="PS50222"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="ABX32785.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="162" mass="17778" checksum="6852166C6DE67BF1" modified="2008-01-15" version="1">MIEFSLSHRMLAAAGLAALLTACASPTAPSASGPAQPAGGHGQSAFMGSYDANRDGVVTRQEYDTVRKQRFLAGDTNGDGWLSEKEYVDEFEARLKQQYAGRQPDERYAQSMKQAHVRFGIVDRNRDGKYTVEEDMAIAERSFKEADVNADGVVDKNDVKKP</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2021-06-02" version="56" xmlns="http://uniprot.org/uniprot">
    <accession>A9BQX4</accession>
    <name>A9BQX4_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Transcriptional regulator, XRE family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_0283</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX32929.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012202222.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_0283"/>
    <dbReference type="EnsemblBacteria" id="ABX32929">
        <property type="protein sequence ID" value="ABX32929"/>
        <property type="gene ID" value="Daci_0283"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_0283"/>
    <dbReference type="eggNOG" id="COG1396">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_2315647_0_0_4"/>
    <dbReference type="OMA" id="NQQTSAV"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd00093">
        <property type="entry name" value="HTH_XRE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.260.40">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001387">
        <property type="entry name" value="Cro/C1-type_HTH"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010982">
        <property type="entry name" value="Lambda_DNA-bd_dom_sf"/>
    </dbReference>
    <dbReference type="SMART" id="SM00530">
        <property type="entry name" value="HTH_XRE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47413">
        <property type="entry name" value="SSF47413"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50943">
        <property type="entry name" value="HTH_CROC1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HTH cro/C1-type" evidence="1">
        <location>
            <begin position="32"/>
            <end position="86"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS50943"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX32929.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="99" mass="10260" checksum="DDA1B862FE92807A" modified="2008-01-15" version="1">MPSSTLMNGPQQEPLQPAAVVIADLSGLGAQIRAMRKAQQLRIDDTAALCGVSLDLLSRLENGKGGVGSDKLLAVLDGLGLAMVIAPKQDALMARLPRA</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="80" xmlns="http://uniprot.org/uniprot">
    <accession>A9BQZ3</accession>
    <name>A9BQZ3_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Nitrogen regulatory protein P-II</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ordered locus">Daci_0302</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="6" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="4">Belongs to the P(II) protein family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX32948.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012202241.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_0302"/>
    <dbReference type="PRIDE" id="A9BQZ3"/>
    <dbReference type="EnsemblBacteria" id="ABX32948">
        <property type="protein sequence ID" value="ABX32948"/>
        <property type="gene ID" value="Daci_0302"/>
    </dbReference>
    <dbReference type="GeneID" id="60690705"/>
    <dbReference type="KEGG" id="dac:Daci_0302"/>
    <dbReference type="eggNOG" id="COG0347">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_082268_0_0_4"/>
    <dbReference type="OMA" id="YRGTEHV"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030234">
        <property type="term" value="F:enzyme regulator activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006808">
        <property type="term" value="P:regulation of nitrogen utilization"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.70.120">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002187">
        <property type="entry name" value="N-reg_PII"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011322">
        <property type="entry name" value="N-reg_PII-like_a/b"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015867">
        <property type="entry name" value="N-reg_PII/ATP_PRibTrfase_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017918">
        <property type="entry name" value="N-reg_PII_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002332">
        <property type="entry name" value="N-reg_PII_urydylation_site"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30115">
        <property type="entry name" value="PTHR30115"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00543">
        <property type="entry name" value="P-II"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF039144">
        <property type="entry name" value="GlnB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00340">
        <property type="entry name" value="PIIGLNB"/>
    </dbReference>
    <dbReference type="SMART" id="SM00938">
        <property type="entry name" value="P-II"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54913">
        <property type="entry name" value="SSF54913"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00638">
        <property type="entry name" value="PII_GLNB_CTER"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51343">
        <property type="entry name" value="PII_GLNB_DOM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00496">
        <property type="entry name" value="PII_GLNB_UMP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="1 3" id="KW-0597">Phosphoprotein</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <feature type="modified residue" description="O-UMP-tyrosine" evidence="2">
        <location>
            <position position="51"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022553"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="PIRSR" id="PIRSR039144-50"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="PIRSR" id="PIRSR602187-50"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="RuleBase" id="RU003936"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="ABX32948.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="112" mass="12119" checksum="793E993B691A1497" modified="2008-01-15" version="1">MKLVTAIIKPFKLDEVREALSDIGVQGITVTEVKGFGRQKGHTELYRGAEYVVDFLPKLRLEAAVPDALVDQVIDAIEAAARTGKIGDGKIFVLPIEQAVRIRTGETGDSAL</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="74" xmlns="http://uniprot.org/uniprot">
    <accession>A9BRE3</accession>
    <name>A9BRE3_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">Probable chemoreceptor glutamine deamidase CheD</fullName>
            <ecNumber evidence="3">3.5.1.44</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="primary">cheD</name>
        <name evidence="5" type="ordered locus">Daci_0658</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="6" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="3">Probably deamidates glutamine residues to glutamate on methyl-accepting chemotaxis receptors (MCPs), playing an important role in chemotaxis.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="3">
            <text>H2O + L-glutaminyl-[protein] = L-glutamyl-[protein] + NH4(+)</text>
            <dbReference type="Rhea" id="RHEA:16441"/>
            <dbReference type="Rhea" id="RHEA-COMP:10207"/>
            <dbReference type="Rhea" id="RHEA-COMP:10208"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:28938"/>
            <dbReference type="ChEBI" id="CHEBI:29973"/>
            <dbReference type="ChEBI" id="CHEBI:30011"/>
            <dbReference type="EC" id="3.5.1.44"/>
        </reaction>
    </comment>
    <comment type="similarity">
        <text evidence="3">Belongs to the CheD family.</text>
    </comment>
    <dbReference type="EC" id="3.5.1.44" evidence="3"/>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX33304.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012202590.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_0658"/>
    <dbReference type="PRIDE" id="A9BRE3"/>
    <dbReference type="EnsemblBacteria" id="ABX33304">
        <property type="protein sequence ID" value="ABX33304"/>
        <property type="gene ID" value="Daci_0658"/>
    </dbReference>
    <dbReference type="GeneID" id="60690999"/>
    <dbReference type="KEGG" id="dac:Daci_0658"/>
    <dbReference type="eggNOG" id="COG1871">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_087854_0_0_4"/>
    <dbReference type="OMA" id="VGMADLN"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0050568">
        <property type="term" value="F:protein-glutamine glutaminase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006935">
        <property type="term" value="P:chemotaxis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd16352">
        <property type="entry name" value="CheD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.1330.200">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01440">
        <property type="entry name" value="CheD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038592">
        <property type="entry name" value="CheD-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005659">
        <property type="entry name" value="Chemorcpt_Glu_NH3ase_CheD"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011324">
        <property type="entry name" value="Cytotoxic_necrot_fac-like_cat"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR35147">
        <property type="entry name" value="PTHR35147"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03975">
        <property type="entry name" value="CheD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF64438">
        <property type="entry name" value="SSF64438"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="1 3" id="KW-0145">Chemotaxis</keyword>
    <keyword evidence="2 3" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="4">
        <location>
            <begin position="1"/>
            <end position="41"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022500"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01440"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="ABX33304.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="245" mass="27275" checksum="B7C1316A9A2C9097" modified="2008-01-15" version="1">MIGDRPAFAPPPAPSERRRMPRINSYTAADYPAPGDPVPRSSLEQLKRQQRYPGEASFFYYDPHFQHNAVKVLPGEYFVSNEDVILVTVLGSCISACIWDRTMRVGGMNHFMLPDGDSADASGRYGSYAMELLINEMLKLGARRESLQAKIFGGGQVMHNFTTMNVGERNTAFVTQYLQTERIPIVSEDVLDIYPRKVVFFPASGKAMVKRLAHAHPEELVQQEFTRGNAAVVARNTAGGSVDLF</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2020-10-07" version="36" xmlns="http://uniprot.org/uniprot">
    <accession>A9BRE7</accession>
    <name>A9BRE7_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Daci_0662</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="2" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX33308.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_0662"/>
    <dbReference type="EnsemblBacteria" id="ABX33308">
        <property type="protein sequence ID" value="ABX33308"/>
        <property type="gene ID" value="Daci_0662"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_0662"/>
    <dbReference type="eggNOG" id="COG4126">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_079356_1_1_4"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ABX33308.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="175" mass="18528" checksum="51AF97BF3AD1CC49" modified="2008-01-15" version="1">MNASLRQKTAGQLDALADPADIDAVLLTCSTLGPAVADCRSGKVWRADGMLARKVAAALQSDPEARIALLCAAPTTYEATRNLFMGELQQGNADQRMQLQCVEGAWALFRRGDVAGYVACMADAAVQAHAAGATQVALTQVSMDDVARHWKPDASMPVPWTVAGSALQALMEIRD</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="73" xmlns="http://uniprot.org/uniprot">
    <accession>A9BRH4</accession>
    <name>A9BRH4_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="6">Transcriptional regulator, IclR family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ordered locus">Daci_0689</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="7" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX33335.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012202621.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_0689"/>
    <dbReference type="PRIDE" id="A9BRH4"/>
    <dbReference type="EnsemblBacteria" id="ABX33335">
        <property type="protein sequence ID" value="ABX33335"/>
        <property type="gene ID" value="Daci_0689"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_0689"/>
    <dbReference type="eggNOG" id="COG1414">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_062618_2_0_4"/>
    <dbReference type="OMA" id="FVAVMGN"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006355">
        <property type="term" value="P:regulation of transcription, DNA-templated"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.450.40">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029016">
        <property type="entry name" value="GAF-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014757">
        <property type="entry name" value="Tscrpt_reg_IclR_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005471">
        <property type="entry name" value="Tscrpt_reg_IclR_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036390">
        <property type="entry name" value="WH_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF09339">
        <property type="entry name" value="HTH_IclR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01614">
        <property type="entry name" value="IclR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00346">
        <property type="entry name" value="HTH_ICLR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46785">
        <property type="entry name" value="SSF46785"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51077">
        <property type="entry name" value="HTH_ICLR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51078">
        <property type="entry name" value="ICLR_ED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0804">Transcription</keyword>
    <keyword evidence="1" id="KW-0805">Transcription regulation</keyword>
    <feature type="domain" description="HTH iclR-type" evidence="4">
        <location>
            <begin position="22"/>
            <end position="84"/>
        </location>
    </feature>
    <feature type="domain" description="IclR-ED" evidence="5">
        <location>
            <begin position="85"/>
            <end position="271"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="3">
        <location>
            <begin position="1"/>
            <end position="21"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023015"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023163"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="PROSITE" id="PS51077"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="PROSITE" id="PS51078"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="ABX33335.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="274" mass="28539" checksum="8861125488E5328A" modified="2008-01-15" version="1">MTSTAASEIDEPAPPRERRQRVQAAETCLAVLKALATLGGRASLTAIAGAVEESPAKVHRYLASLMAEGLVEQDRGGTQYALAAEAMRVGLAAMRQSDPIRLAEPALLHLREALQVTSFVAVMGNLGPTIVRFEEPGLPVTVNVRVGSVMSLLWSATGRAFFAFMDDDARVDALLARELAEAPAARRALLDGADPLGTLRREIRAAGCASVRDVNLPGISAVAAPLHDYTGHVVGVLCALGASGGFDPDPQGAVARALRAEAARVSASLGYLPG</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="59" xmlns="http://uniprot.org/uniprot">
    <accession>A9BRI1</accession>
    <name>A9BRI1_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="3">AMP-dependent synthetase and ligase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Daci_0696</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="4" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX33342.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012202628.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_0696"/>
    <dbReference type="PRIDE" id="A9BRI1"/>
    <dbReference type="EnsemblBacteria" id="ABX33342">
        <property type="protein sequence ID" value="ABX33342"/>
        <property type="gene ID" value="Daci_0696"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_0696"/>
    <dbReference type="eggNOG" id="COG0318">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_000022_59_0_4"/>
    <dbReference type="OMA" id="IVFNHGH"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016874">
        <property type="term" value="F:ligase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.300.30">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.12780">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025110">
        <property type="entry name" value="AMP-bd_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045851">
        <property type="entry name" value="AMP-bd_C_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020845">
        <property type="entry name" value="AMP-binding_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000873">
        <property type="entry name" value="AMP-dep_Synth/Lig"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR042099">
        <property type="entry name" value="ANL_N_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00501">
        <property type="entry name" value="AMP-binding"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13193">
        <property type="entry name" value="AMP-binding_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00455">
        <property type="entry name" value="AMP_BINDING"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-0436">Ligase</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="AMP-binding" evidence="1">
        <location>
            <begin position="5"/>
            <end position="410"/>
        </location>
    </feature>
    <feature type="domain" description="AMP-binding_C" evidence="2">
        <location>
            <begin position="420"/>
            <end position="498"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF00501"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF13193"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ABX33342.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="521" mass="56257" checksum="C959CA5D95268A59" modified="2008-01-15" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="73" xmlns="http://uniprot.org/uniprot">
    <accession>A9BRI2</accession>
    <name>A9BRI2_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="8">Acyl-CoA dehydrogenase domain protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="8" type="ordered locus">Daci_0697</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="9" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>FAD</name>
            <dbReference type="ChEBI" id="CHEBI:57692"/>
        </cofactor>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the acyl-CoA dehydrogenase family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX33343.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012202629.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_0697"/>
    <dbReference type="PRIDE" id="A9BRI2"/>
    <dbReference type="EnsemblBacteria" id="ABX33343">
        <property type="protein sequence ID" value="ABX33343"/>
        <property type="gene ID" value="Daci_0697"/>
    </dbReference>
    <dbReference type="GeneID" id="60685253"/>
    <dbReference type="KEGG" id="dac:Daci_0697"/>
    <dbReference type="eggNOG" id="COG1960">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_018204_0_2_4"/>
    <dbReference type="OMA" id="MAKWWTS"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003995">
        <property type="term" value="F:acyl-CoA dehydrogenase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0050660">
        <property type="term" value="F:flavin adenine dinucleotide binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.540.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.110.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006089">
        <property type="entry name" value="Acyl-CoA_DH_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006091">
        <property type="entry name" value="Acyl-CoA_Oxase/DH_mid-dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR046373">
        <property type="entry name" value="Acyl-CoA_Oxase/DH_mid-dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036250">
        <property type="entry name" value="AcylCo_DH-like_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009075">
        <property type="entry name" value="AcylCo_DH/oxidase_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013786">
        <property type="entry name" value="AcylCoA_DH/ox_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037069">
        <property type="entry name" value="AcylCoA_DH/ox_N_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009100">
        <property type="entry name" value="AcylCoA_DH/oxidase_NM_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00441">
        <property type="entry name" value="Acyl-CoA_dh_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02770">
        <property type="entry name" value="Acyl-CoA_dh_M"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02771">
        <property type="entry name" value="Acyl-CoA_dh_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47203">
        <property type="entry name" value="SSF47203"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56645">
        <property type="entry name" value="SSF56645"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00072">
        <property type="entry name" value="ACYL_COA_DH_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00073">
        <property type="entry name" value="ACYL_COA_DH_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-0274">FAD</keyword>
    <keyword evidence="3" id="KW-0285">Flavoprotein</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Acyl-CoA_dh_N" evidence="7">
        <location>
            <begin position="12"/>
            <end position="121"/>
        </location>
    </feature>
    <feature type="domain" description="Acyl-CoA_dh_M" evidence="6">
        <location>
            <begin position="125"/>
            <end position="220"/>
        </location>
    </feature>
    <feature type="domain" description="Acyl-CoA_dh_1" evidence="5">
        <location>
            <begin position="232"/>
            <end position="379"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001974"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00009347"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022630"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022827"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="Pfam" id="PF00441"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="Pfam" id="PF02770"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="Pfam" id="PF02771"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="ABX33343.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="380" mass="42449" checksum="D0804602B33675EC" modified="2008-01-15" version="1">MQDLTERSVYREDHEQFREQARRFFEREIVPHHAEWERQGIVPKEVWRKAGREGLLNPMLPEPYGGGGDFGHAAVLLEEIARTGASGLGFPLHSDIVAPYIHAYGSKAQKDRWLPRMAAGELIGAIAMTEPGAGSDLKSVRTTARREGDHYVLNGQKTFITNGINSELVIVVAKTAPEMGAKGVSLIVVEDGMPGFSKGRKLEKIGLMAQDTSELFFDNVRVPADHLLGEENAGFRYLMHELAQERLVVAVRAAASIEAFLHKTIAYTRERKAFGQPVFDFQNTRFKLAEAKAQATMLRVFVDDCIALHLRRALAPDRAAMVKLNATALQNRLLDEFLQLHGGYGYMTEYQIGRAWTDARIGRIYGGSDEIMKEIIARTL</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="57" xmlns="http://uniprot.org/uniprot">
    <accession>A9BRJ5</accession>
    <name>A9BRJ5_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="6">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ordered locus">Daci_0710</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="7" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX33356.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012202642.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_0710"/>
    <dbReference type="PRIDE" id="A9BRJ5"/>
    <dbReference type="EnsemblBacteria" id="ABX33356">
        <property type="protein sequence ID" value="ABX33356"/>
        <property type="gene ID" value="Daci_0710"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_0710"/>
    <dbReference type="eggNOG" id="COG5316">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_010457_3_1_4"/>
    <dbReference type="OMA" id="APGQEFK"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011935">
        <property type="entry name" value="CHP02231"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037291">
        <property type="entry name" value="DUF4139"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025554">
        <property type="entry name" value="DUF4140"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR31005">
        <property type="entry name" value="PTHR31005"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13598">
        <property type="entry name" value="DUF4139"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13600">
        <property type="entry name" value="DUF4140"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR02231">
        <property type="entry name" value="TIGR02231"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="3">
        <location>
            <begin position="1"/>
            <end position="27"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5002732444" evidence="3">
        <location>
            <begin position="28"/>
            <end position="550"/>
        </location>
    </feature>
    <feature type="domain" description="DUF4140" evidence="5">
        <location>
            <begin position="44"/>
            <end position="133"/>
        </location>
    </feature>
    <feature type="domain" description="DUF4139" evidence="4">
        <location>
            <begin position="224"/>
            <end position="542"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="530"/>
            <end position="550"/>
        </location>
    </feature>
    <feature type="coiled-coil region" evidence="1">
        <location>
            <begin position="108"/>
            <end position="135"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="2">
        <location>
            <begin position="536"/>
            <end position="550"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="Pfam" id="PF13598"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="Pfam" id="PF13600"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="ABX33356.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="550" mass="58567" checksum="1CDE4C3E996B2C4E" modified="2008-01-15" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="79" xmlns="http://uniprot.org/uniprot">
    <accession>A9BRK3</accession>
    <name>A9BRK3_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">Putative glutamate--cysteine ligase 2</fullName>
            <ecNumber evidence="2">6.3.2.2</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="2">Gamma-glutamylcysteine synthetase 2</fullName>
            <shortName evidence="2">GCS 2</shortName>
            <shortName evidence="2">Gamma-GCS 2</shortName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Daci_0718</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="4" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="2">ATP-dependent carboxylate-amine ligase which exhibits weak glutamate--cysteine ligase activity.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1 2">
            <text>ATP + L-cysteine + L-glutamate = ADP + gamma-L-glutamyl-L-cysteine + H(+) + phosphate</text>
            <dbReference type="Rhea" id="RHEA:13285"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:29985"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:35235"/>
            <dbReference type="ChEBI" id="CHEBI:43474"/>
            <dbReference type="ChEBI" id="CHEBI:58173"/>
            <dbReference type="ChEBI" id="CHEBI:456216"/>
            <dbReference type="EC" id="6.3.2.2"/>
        </reaction>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the glutamate--cysteine ligase type 2 family. YbdK subfamily.</text>
    </comment>
    <dbReference type="EC" id="6.3.2.2" evidence="2"/>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX33364.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_0718"/>
    <dbReference type="PRIDE" id="A9BRK3"/>
    <dbReference type="EnsemblBacteria" id="ABX33364">
        <property type="protein sequence ID" value="ABX33364"/>
        <property type="gene ID" value="Daci_0718"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_0718"/>
    <dbReference type="eggNOG" id="COG2170">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_044848_1_1_4"/>
    <dbReference type="OMA" id="LIFGLHV"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004357">
        <property type="term" value="F:glutamate-cysteine ligase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0042398">
        <property type="term" value="P:cellular modified amino acid biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01609">
        <property type="entry name" value="Glu_cys_ligase_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006336">
        <property type="entry name" value="GCS2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014746">
        <property type="entry name" value="Gln_synth/guanido_kin_cat_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011793">
        <property type="entry name" value="YbdK"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04107">
        <property type="entry name" value="GCS2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55931">
        <property type="entry name" value="SSF55931"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR02050">
        <property type="entry name" value="gshA_cyan_rel"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="2 3" id="KW-0436">Ligase</keyword>
    <keyword evidence="2" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00029283"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01609"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ABX33364.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="376" mass="42354" checksum="2F4F737AADD59001" modified="2008-01-15" version="1">MNVSLEAFNSSEPLTLGVELELQLVNTHDYDLAPYAEDMLRLMLKNPLPGSVVPEMTNSMIEISTSVCHSASEVLGQLSQIRDALVKSADKLNIAVVGGGTHPFQQWHERRIYDKPRFQELSQLYGYLSKQFTIFGQHVHIGCPDADAALLMLHRMSRYIPHFIALSASSPYVQGHDTAFDSARLNSVFAFPLSGRAPCVLHWSEFEQYFDKMTRTGVVKSMKDFYWDIRPKPEFGTIEIRVFDTPLTIERAAALSGYVQALAAWFMDTQPFTPVEDDYLVYTYNRFQACRFGLEAVYVDPATGEHMPLADHILKTMDAVADYAARHGAAPALHLLRSDVAAGSNDARWLRERQRSEQLLAEVSRQAAMRFRGQAV</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="72" xmlns="http://uniprot.org/uniprot">
    <accession>A9BRQ2</accession>
    <name>A9BRQ2_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="3 7">Magnesium transport protein CorA</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="7" type="primary">corA</name>
        <name evidence="8" type="ordered locus">Daci_0973</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="9" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="7">Mediates influx of magnesium ions.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1 7">Membrane</location>
            <topology evidence="1 7">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2 7">Belongs to the CorA metal ion transporter (MIT) (TC 1.A.35) family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX33619.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012202905.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_0973"/>
    <dbReference type="PRIDE" id="A9BRQ2"/>
    <dbReference type="EnsemblBacteria" id="ABX33619">
        <property type="protein sequence ID" value="ABX33619"/>
        <property type="gene ID" value="Daci_0973"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_0973"/>
    <dbReference type="eggNOG" id="COG0598">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_007127_5_0_4"/>
    <dbReference type="OMA" id="RAVSFMM"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015087">
        <property type="term" value="F:cobalt ion transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015095">
        <property type="term" value="F:magnesium ion transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045861">
        <property type="entry name" value="CorA_cytoplasmic_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045863">
        <property type="entry name" value="CorA_TM1_TM2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004488">
        <property type="entry name" value="Mg/Co-transport_prot_CorA"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002523">
        <property type="entry name" value="MgTranspt_CorA/ZnTranspt_ZntB"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01544">
        <property type="entry name" value="CorA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF143865">
        <property type="entry name" value="SSF143865"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF144083">
        <property type="entry name" value="SSF144083"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00383">
        <property type="entry name" value="corA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="7" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="7" id="KW-0406">Ion transport</keyword>
    <keyword evidence="7" id="KW-0460">Magnesium</keyword>
    <keyword evidence="6 7" id="KW-0472">Membrane</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4 7" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="5 7" id="KW-1133">Transmembrane helix</keyword>
    <keyword evidence="7" id="KW-0813">Transport</keyword>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="269"/>
            <end position="289"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="301"/>
            <end position="321"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00009765"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00019439"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="RuleBase" id="RU362010"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="ABX33619.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="328" mass="38044" checksum="74573991DE5A3B89" modified="2008-01-15" version="1">MLNIFTLANGRLVQEEIESLEELSRFKPIWVDLESPTVEEKRWIKQHYELSIPEDAMDDDIEESARFYEEDNGELHIRSDFLIDDDEDPRSVRVAFIVNEHNKNLRSCGVLFSIHDEDVPVFRLLRMRARRAPGLIDEAKDVLLKLFDADAEYSADTLERIYDDLEKASQMVLSGDVTDDVAREVLGAIARQEDLNGRIRRNVMDTRRAVSFMMRSKMLNAEQFEEARQILRDIESLDSHTAFLFDKINFLMDATVGFININQNKIIKIFSVASVALLPPTLIASVYGMNFRFMPELEWEFGYVYVIALMVLSAVGPMLYFRKRGWLK</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="79" xmlns="http://uniprot.org/uniprot">
    <accession>A9BRQ9</accession>
    <name>A9BRQ9_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Methylmalonate-semialdehyde dehydrogenase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ordered locus">Daci_0980</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="5" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX33626.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012202912.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_0980"/>
    <dbReference type="PRIDE" id="A9BRQ9"/>
    <dbReference type="EnsemblBacteria" id="ABX33626">
        <property type="protein sequence ID" value="ABX33626"/>
        <property type="gene ID" value="Daci_0980"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_0980"/>
    <dbReference type="eggNOG" id="COG1012">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_005391_1_10_4"/>
    <dbReference type="OMA" id="NWTLRQP"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004491">
        <property type="term" value="F:methylmalonate-semialdehyde dehydrogenase (acylating) activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd07085">
        <property type="entry name" value="ALDH_F6_MMSDH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.309.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.605.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016161">
        <property type="entry name" value="Ald_DH/histidinol_DH"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016163">
        <property type="entry name" value="Ald_DH_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016160">
        <property type="entry name" value="Ald_DH_CS_CYS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016162">
        <property type="entry name" value="Ald_DH_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015590">
        <property type="entry name" value="Aldehyde_DH_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010061">
        <property type="entry name" value="MeMal-semiAld_DH"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43866">
        <property type="entry name" value="PTHR43866"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00171">
        <property type="entry name" value="Aldedh"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53720">
        <property type="entry name" value="SSF53720"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01722">
        <property type="entry name" value="MMSDH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00070">
        <property type="entry name" value="ALDEHYDE_DEHYDR_CYS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Aldedh" evidence="3">
        <location>
            <begin position="24"/>
            <end position="492"/>
        </location>
    </feature>
    <feature type="active site" evidence="2">
        <location>
            <position position="288"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023002"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU10008"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF00171"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="ABX33626.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="512" mass="54815" checksum="8713D77A2EBE25C2" modified="2008-01-15" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="90" xmlns="http://uniprot.org/uniprot">
    <accession>A9BRU0</accession>
    <name>A9BRU0_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="4 6">ATP-dependent DNA helicase RecG</fullName>
            <ecNumber evidence="3 6">3.6.4.12</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="6" type="primary">recG</name>
        <name evidence="10" type="ordered locus">Daci_1011</name>
    </gene>
    <organism evidence="10 11">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="10 11" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="11">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="11" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="11">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="6">Critical role in recombination and DNA repair. Helps process Holliday junction intermediates to mature products by catalyzing branch migration. Has a DNA unwinding activity characteristic of a DNA helicase with a 3'- to 5'- polarity. Unwinds branched duplex DNA (Y-DNA).</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>ATP + H2O = ADP + H(+) + phosphate</text>
            <dbReference type="Rhea" id="RHEA:13065"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:43474"/>
            <dbReference type="ChEBI" id="CHEBI:456216"/>
            <dbReference type="EC" id="3.6.4.12"/>
        </reaction>
    </comment>
    <comment type="similarity">
        <text evidence="2 6">Belongs to the helicase family. RecG subfamily.</text>
    </comment>
    <dbReference type="EC" id="3.6.4.12" evidence="3 6"/>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX33657.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012202943.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_1011"/>
    <dbReference type="PRIDE" id="A9BRU0"/>
    <dbReference type="EnsemblBacteria" id="ABX33657">
        <property type="protein sequence ID" value="ABX33657"/>
        <property type="gene ID" value="Daci_1011"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_1011"/>
    <dbReference type="eggNOG" id="COG1200">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_005122_7_5_4"/>
    <dbReference type="OMA" id="DNGFQAC"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016887">
        <property type="term" value="F:ATP hydrolysis activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="RHEA"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003678">
        <property type="term" value="F:DNA helicase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003676">
        <property type="term" value="F:nucleic acid binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006310">
        <property type="term" value="P:DNA recombination"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006281">
        <property type="term" value="P:DNA repair"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.50.140">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004609">
        <property type="entry name" value="ATP-dep_DNA_helicase_RecG"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011545">
        <property type="entry name" value="DEAD/DEAH_box_helicase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014001">
        <property type="entry name" value="Helicase_ATP-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001650">
        <property type="entry name" value="Helicase_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012340">
        <property type="entry name" value="NA-bd_OB-fold"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045562">
        <property type="entry name" value="RecG_dom3_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR033454">
        <property type="entry name" value="RecG_wedge"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00270">
        <property type="entry name" value="DEAD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00271">
        <property type="entry name" value="Helicase_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF19833">
        <property type="entry name" value="RecG_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF17191">
        <property type="entry name" value="RecG_wedge"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00487">
        <property type="entry name" value="DEXDc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00490">
        <property type="entry name" value="HELICc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50249">
        <property type="entry name" value="SSF50249"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00643">
        <property type="entry name" value="recG"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51192">
        <property type="entry name" value="HELICASE_ATP_BIND_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51194">
        <property type="entry name" value="HELICASE_CTER"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="6" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="6" id="KW-0227">DNA damage</keyword>
    <keyword evidence="5 6" id="KW-0233">DNA recombination</keyword>
    <keyword evidence="6" id="KW-0234">DNA repair</keyword>
    <keyword evidence="6 10" id="KW-0347">Helicase</keyword>
    <keyword evidence="6" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="6" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="11" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Helicase ATP-binding" evidence="8">
        <location>
            <begin position="329"/>
            <end position="498"/>
        </location>
    </feature>
    <feature type="domain" description="Helicase C-terminal" evidence="9">
        <location>
            <begin position="521"/>
            <end position="681"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="7">
        <location>
            <begin position="1"/>
            <end position="53"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001665"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00007504"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00012551"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00017846"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023172"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="RuleBase" id="RU363016"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="PROSITE" id="PS51192"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="9">
        <source>
            <dbReference type="PROSITE" id="PS51194"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="EMBL" id="ABX33657.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="746" mass="80919" checksum="DA12C9B607F6A62E" modified="2008-01-15" version="1"> </sequence>
</entry>
<entry dataset="Swiss-Prot" created="2009-04-14" modified="2022-08-03" version="74" xmlns="http://uniprot.org/uniprot">
    <accession>A9BRW6</accession>
    <name>RL6_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">50S ribosomal protein L6</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="1" type="primary">rplF</name>
        <name type="ordered locus">Daci_1037</name>
    </gene>
    <organism>
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference key="1">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain>DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="1">This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7/L12 stalk, and near the tRNA binding site of the peptidyltransferase center.</text>
    </comment>
    <comment type="subunit">
        <text evidence="1">Part of the 50S ribosomal subunit.</text>
    </comment>
    <comment type="similarity">
        <text evidence="1">Belongs to the universal ribosomal protein uL6 family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX33683.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012202969.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A9BRW6"/>
    <dbReference type="SMR" id="A9BRW6"/>
    <dbReference type="STRING" id="398578.Daci_1037"/>
    <dbReference type="PRIDE" id="A9BRW6"/>
    <dbReference type="EnsemblBacteria" id="ABX33683">
        <property type="protein sequence ID" value="ABX33683"/>
        <property type="gene ID" value="Daci_1037"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_1037"/>
    <dbReference type="eggNOG" id="COG0097">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_065464_1_2_4"/>
    <dbReference type="OMA" id="KPDPYKG"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005840">
        <property type="term" value="C:ribosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0019843">
        <property type="term" value="F:rRNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003735">
        <property type="term" value="F:structural constituent of ribosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006412">
        <property type="term" value="P:translation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.930.12">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01365_B">
        <property type="entry name" value="Ribosomal_L6_B"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000702">
        <property type="entry name" value="Ribosomal_L6"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020040">
        <property type="entry name" value="Ribosomal_L6_a/b-dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036789">
        <property type="entry name" value="Ribosomal_L6_a/b-dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019906">
        <property type="entry name" value="Ribosomal_L6_bac-type"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002358">
        <property type="entry name" value="Ribosomal_L6_CS"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11655">
        <property type="entry name" value="PTHR11655"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11655:SF14">
        <property type="entry name" value="PTHR11655:SF14"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00347">
        <property type="entry name" value="Ribosomal_L6"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF002162">
        <property type="entry name" value="Ribosomal_L6"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00059">
        <property type="entry name" value="RIBOSOMALL6"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56053">
        <property type="entry name" value="SSF56053"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR03654">
        <property type="entry name" value="L6_bact"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00525">
        <property type="entry name" value="RIBOSOMAL_L6_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword id="KW-1185">Reference proteome</keyword>
    <keyword id="KW-0687">Ribonucleoprotein</keyword>
    <keyword id="KW-0689">Ribosomal protein</keyword>
    <keyword id="KW-0694">RNA-binding</keyword>
    <keyword id="KW-0699">rRNA-binding</keyword>
    <feature type="chain" id="PRO_1000143974" description="50S ribosomal protein L6">
        <location>
            <begin position="1"/>
            <end position="177"/>
        </location>
    </feature>
    <evidence type="ECO:0000255" key="1">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01365"/>
        </source>
    </evidence>
    <sequence length="177" mass="18708" checksum="FD4B09AF6C26A523" modified="2008-01-15" version="1">MSRVAKTPVAIPAGVDVSIKDDQINVKGTGGALSQAQNALVKISNNEGKLSFEPVNDSREANAMSGTMRQLVNNMVVGVSKGFEKKLSLVGVGFKASASGSKLNLAIGFSHPVNFEMPAGITVTTPTPTEILVKGADRQAVGQMAAEIRAVRPPEPYKGKGIRYSDEKVVIKETKKK</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="75" xmlns="http://uniprot.org/uniprot">
    <accession>A9BS73</accession>
    <name>A9BS73_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="9">Protein-export membrane protein SecF</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="9" type="primary">secF</name>
        <name evidence="10" type="ordered locus">Daci_0837</name>
    </gene>
    <organism evidence="10 11">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="10 11" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="11">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="11" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="11">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="9">Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA.</text>
    </comment>
    <comment type="subunit">
        <text evidence="9">Forms a complex with SecD. Part of the essential Sec protein translocation apparatus which comprises SecA, SecYEG and auxiliary proteins SecDF-YajC and YidC.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="9">Cell inner membrane</location>
            <topology evidence="9">Multi-pass membrane protein</topology>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="9">Belongs to the SecD/SecF family. SecF subfamily.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX33483.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012202769.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_0837"/>
    <dbReference type="PRIDE" id="A9BS73"/>
    <dbReference type="EnsemblBacteria" id="ABX33483">
        <property type="protein sequence ID" value="ABX33483"/>
        <property type="gene ID" value="Daci_0837"/>
    </dbReference>
    <dbReference type="GeneID" id="60685399"/>
    <dbReference type="KEGG" id="dac:Daci_0837"/>
    <dbReference type="eggNOG" id="COG0341">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_050012_1_0_4"/>
    <dbReference type="OMA" id="AFEWRMA"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015450">
        <property type="term" value="F:protein-transporting ATPase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0065002">
        <property type="term" value="P:intracellular protein transmembrane transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006605">
        <property type="term" value="P:protein targeting"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043952">
        <property type="term" value="P:protein transport by the Sec complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01464_B">
        <property type="entry name" value="SecF_B"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR022813">
        <property type="entry name" value="SecD/SecF_arch_bac"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR022645">
        <property type="entry name" value="SecD/SecF_bac"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR022646">
        <property type="entry name" value="SecD/SecF_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005665">
        <property type="entry name" value="SecF_bac"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30081">
        <property type="entry name" value="PTHR30081"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07549">
        <property type="entry name" value="Sec_GG"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02355">
        <property type="entry name" value="SecD_SecF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR01755">
        <property type="entry name" value="SECFTRNLCASE"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00916">
        <property type="entry name" value="2A0604s01"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00966">
        <property type="entry name" value="3a0501s07"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="9" id="KW-0997">Cell inner membrane</keyword>
    <keyword evidence="3 9" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="8 9" id="KW-0472">Membrane</keyword>
    <keyword evidence="5 9" id="KW-0653">Protein transport</keyword>
    <keyword evidence="11" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="7 9" id="KW-0811">Translocation</keyword>
    <keyword evidence="4 9" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="6 9" id="KW-1133">Transmembrane helix</keyword>
    <keyword evidence="2 9" id="KW-0813">Transport</keyword>
    <feature type="transmembrane region" description="Helical" evidence="9">
        <location>
            <begin position="12"/>
            <end position="35"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="9">
        <location>
            <begin position="133"/>
            <end position="153"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="9">
        <location>
            <begin position="160"/>
            <end position="182"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="9">
        <location>
            <begin position="188"/>
            <end position="209"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="9">
        <location>
            <begin position="240"/>
            <end position="257"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="9">
        <location>
            <begin position="263"/>
            <end position="292"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022448"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022927"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023010"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01464"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="EMBL" id="ABX33483.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="316" mass="34955" checksum="FC00AAA5D516DB46" modified="2008-01-15" version="1">MEFFRIRKDIPFMKYALVLNAISFITFALAVFFLLTRGLHLSVEFTGGTVMEVAYTQTADIAKVRDTVSKLGYSDVTVQNFGTSRDVMIRLPVQKDVSSAQQSEQVLTALKKEDAEVTLRRTEFVGPQVGDELMHNGLMALGFVVLGIVIYLAMRFEWKFGVAAVIANLHDVVIILGFFAFFQWEFSLSVLAGVLAVLGYSVNESVVIFDRIREAFRKFRKLSTTEVIDHAITSTMSRTIITHASTEAMVLSMFFFGGPSLHYFALALTIGILFGIYSSVFVAAAIAMWLGVKREDLIKAPKASTDPNDPNAGATV</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="90" xmlns="http://uniprot.org/uniprot">
    <accession>A9BSN2</accession>
    <name>A9BSN2_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="11">3-hydroxyacyl-CoA dehydrogenase NAD-binding</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="11" type="ordered locus">Daci_1393</name>
    </gene>
    <organism evidence="11 12">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="11 12" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="12">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="12" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="12">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="7">
            <text>a (3S)-3-hydroxyacyl-CoA + NAD(+) = a 3-oxoacyl-CoA + H(+) + NADH</text>
            <dbReference type="Rhea" id="RHEA:22432"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:57318"/>
            <dbReference type="ChEBI" id="CHEBI:57540"/>
            <dbReference type="ChEBI" id="CHEBI:57945"/>
            <dbReference type="ChEBI" id="CHEBI:90726"/>
            <dbReference type="EC" id="1.1.1.35"/>
        </reaction>
    </comment>
    <comment type="pathway">
        <text evidence="1">Lipid metabolism; fatty acid beta-oxidation.</text>
    </comment>
    <comment type="similarity">
        <text evidence="8">Belongs to the enoyl-CoA hydratase/isomerase family.</text>
    </comment>
    <comment type="similarity">
        <text evidence="2">In the N-terminal section; belongs to the enoyl-CoA hydratase/isomerase family.</text>
    </comment>
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        <property type="protein sequence ID" value="ABX34037.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012203323.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_1393"/>
    <dbReference type="PRIDE" id="A9BSN2"/>
    <dbReference type="EnsemblBacteria" id="ABX34037">
        <property type="protein sequence ID" value="ABX34037"/>
        <property type="gene ID" value="Daci_1393"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_1393"/>
    <dbReference type="eggNOG" id="COG1024">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="eggNOG" id="COG1250">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_009834_16_3_4"/>
    <dbReference type="OMA" id="DPLFWKP"/>
    <dbReference type="UniPathway" id="UPA00659"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003857">
        <property type="term" value="F:3-hydroxyacyl-CoA dehydrogenase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0070403">
        <property type="term" value="F:NAD+ binding"/>
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        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006635">
        <property type="term" value="P:fatty acid beta-oxidation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniPathway"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006176">
        <property type="entry name" value="3-OHacyl-CoA_DH_NAD-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006108">
        <property type="entry name" value="3HC_DH_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008927">
        <property type="entry name" value="6-PGluconate_DH-like_C_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029045">
        <property type="entry name" value="ClpP/crotonase-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018376">
        <property type="entry name" value="Enoyl-CoA_hyd/isom_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001753">
        <property type="entry name" value="Enoyl-CoA_hydra/iso"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036291">
        <property type="entry name" value="NAD(P)-bd_dom_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00725">
        <property type="entry name" value="3HCDH"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02737">
        <property type="entry name" value="3HCDH_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00378">
        <property type="entry name" value="ECH_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48179">
        <property type="entry name" value="SSF48179"/>
        <property type="match status" value="2"/>
    </dbReference>
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        <property type="entry name" value="SSF51735"/>
        <property type="match status" value="1"/>
    </dbReference>
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        <property type="entry name" value="SSF52096"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00166">
        <property type="entry name" value="ENOYL_COA_HYDRATASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-0276">Fatty acid metabolism</keyword>
    <keyword evidence="4" id="KW-0442">Lipid degradation</keyword>
    <keyword evidence="6" id="KW-0443">Lipid metabolism</keyword>
    <keyword evidence="5" id="KW-0520">NAD</keyword>
    <keyword evidence="12" id="KW-1185">Reference proteome</keyword>
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        <location>
            <begin position="301"/>
            <end position="477"/>
        </location>
    </feature>
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        <location>
            <begin position="482"/>
            <end position="575"/>
        </location>
    </feature>
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        <location>
            <begin position="612"/>
            <end position="696"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00005005"/>
        </source>
    </evidence>
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        <source>
            <dbReference type="ARBA" id="ARBA00008750"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022832"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022963"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023027"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023098"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023693"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="RuleBase" id="RU003707"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="9">
        <source>
            <dbReference type="Pfam" id="PF00725"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="10">
        <source>
            <dbReference type="Pfam" id="PF02737"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="EMBL" id="ABX34037.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="705" mass="75091" checksum="E2C88C89230FC07C" modified="2008-01-15" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="60" xmlns="http://uniprot.org/uniprot">
    <accession>A9BSR0</accession>
    <name>A9BSR0_DELAS</name>
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        <submittedName>
            <fullName evidence="5">Polypeptide-transport-associated domain protein ShlB-type</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ordered locus">Daci_1421</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
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        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
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            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="6" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX34065.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
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        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_1421"/>
    <dbReference type="PRIDE" id="A9BSR0"/>
    <dbReference type="EnsemblBacteria" id="ABX34065">
        <property type="protein sequence ID" value="ABX34065"/>
        <property type="gene ID" value="Daci_1421"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_1421"/>
    <dbReference type="eggNOG" id="COG2831">
        <property type="taxonomic scope" value="Bacteria"/>
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    <dbReference type="HOGENOM" id="CLU_020581_4_1_4"/>
    <dbReference type="OMA" id="GLNHTQK"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015031">
        <property type="term" value="P:protein transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005565">
        <property type="entry name" value="Hemolysn_activator_HlyB_C"/>
    </dbReference>
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        <property type="entry name" value="Polypept-transport_assoc_ShlB"/>
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        <property type="entry name" value="ShlB_POTRA"/>
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        <property type="entry name" value="TPS"/>
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    </dbReference>
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    </dbReference>
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        <location>
            <begin position="1"/>
            <end position="22"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5002736001" evidence="1">
        <location>
            <begin position="23"/>
            <end position="565"/>
        </location>
    </feature>
    <feature type="domain" description="POTRA_2" evidence="3">
        <location>
            <begin position="82"/>
            <end position="157"/>
        </location>
    </feature>
    <feature type="domain" description="POTRA_3" evidence="4">
        <location>
            <begin position="158"/>
            <end position="217"/>
        </location>
    </feature>
    <feature type="domain" description="ShlB" evidence="2">
        <location>
            <begin position="222"/>
            <end position="528"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF03865"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF08479"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="Pfam" id="PF17287"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="ABX34065.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="565" mass="61208" checksum="A5A9229A842CB04A" modified="2008-01-15" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="63" xmlns="http://uniprot.org/uniprot">
    <accession>A9BSS8</accession>
    <name>A9BSS8_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">3-carboxy-cis,cis-muconate cycloisomerase</fullName>
        </submittedName>
    </protein>
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        <name evidence="2" type="ordered locus">Daci_1439</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
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        <lineage>
            <taxon>Bacteria</taxon>
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            <taxon>Betaproteobacteria</taxon>
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    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
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            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX34083.1"/>
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        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_1439"/>
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    <dbReference type="EnsemblBacteria" id="ABX34083">
        <property type="protein sequence ID" value="ABX34083"/>
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    <dbReference type="KEGG" id="dac:Daci_1439"/>
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        <property type="taxonomic scope" value="Bacteria"/>
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    <dbReference type="OMA" id="HRATPMI"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0047472">
        <property type="term" value="F:3-carboxy-cis,cis-muconate cycloisomerase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016829">
        <property type="term" value="F:lyase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="GO" id="GO:0019619">
        <property type="term" value="P:3,4-dihydroxybenzoate catabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
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        <property type="match status" value="1"/>
    </dbReference>
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        <property type="entry name" value="AdenyloSucc_lyase_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR024083">
        <property type="entry name" value="Fumarase/histidase_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000362">
        <property type="entry name" value="Fumarate_lyase_fam"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR022761">
        <property type="entry name" value="Fumarate_lyase_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008948">
        <property type="entry name" value="L-Aspartase-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012789">
        <property type="entry name" value="Protocat_PcaB"/>
    </dbReference>
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        <property type="entry name" value="ADSL_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00206">
        <property type="entry name" value="Lyase_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00149">
        <property type="entry name" value="FUMRATELYASE"/>
    </dbReference>
    <dbReference type="SMART" id="SM00998">
        <property type="entry name" value="ADSL_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48557">
        <property type="entry name" value="SSF48557"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR02426">
        <property type="entry name" value="protocat_pcaB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0413">Isomerase</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="ADSL_C" evidence="1">
        <location>
            <begin position="370"/>
            <end position="449"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="SMART" id="SM00998"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX34083.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="460" mass="49756" checksum="F53F2F1614A18FFF" modified="2008-01-15" version="1">MTLPSFTSSTAIDSLLFRDAFGTPAMRAIFADSALVSRYIEVEVALARAQGRCGVIPAEAAHEIAQRCSLDALDFELLRKETDIVGYPILPLVHQLVKQCGEAGRYIHWGATTQDIMDTATVLQVRDALDLVDADIAALRTILADLAERHRDTPMAGRTHLQHALPITFGYKAAIWLAMFDRHAQRLQELRPRVLVGQFAGAAGTLASLSGRGLEVQQLLMEELGLGVPATTWHVARDGLAEAVNFLALVTGSLGKIAYDVMLLSSTEFGEVFEPFVTGRGASSTMPQKRNAISSELMLAASKAVRQHAGLMLDAMVQDLERATGPWHAEWVALPESFVLSAGALHQARFMLGGLIVDPERMARNLDMTDGLIVAEAVMMGLAPHTGRQQAHDIVYAACRSVNAEGGTLADALARLPEVTAHFDRAALQRLTDPRNYLGEAPQMVDRALALSRAHTASGR</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="65" xmlns="http://uniprot.org/uniprot">
    <accession>A9BST3</accession>
    <name>A9BST3_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Amidase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_1444</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX34088.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012203374.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_1444"/>
    <dbReference type="PRIDE" id="A9BST3"/>
    <dbReference type="EnsemblBacteria" id="ABX34088">
        <property type="protein sequence ID" value="ABX34088"/>
        <property type="gene ID" value="Daci_1444"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_1444"/>
    <dbReference type="eggNOG" id="COG0154">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_009600_0_3_4"/>
    <dbReference type="OMA" id="MVEFAFS"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003824">
        <property type="term" value="F:catalytic activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.1300.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000120">
        <property type="entry name" value="Amidase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023631">
        <property type="entry name" value="Amidase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036928">
        <property type="entry name" value="AS_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11895">
        <property type="entry name" value="PTHR11895"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01425">
        <property type="entry name" value="Amidase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF75304">
        <property type="entry name" value="SSF75304"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Amidase" evidence="1">
        <location>
            <begin position="29"/>
            <end position="441"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF01425"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX34088.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="456" mass="47428" checksum="CA0E90C5322C1B21" modified="2008-01-15" version="1">MTQALPLPSLELASQRLHGGETTSVQLTEQALARTMSGEGPKVFTRVFQGAALAEARASDVLRAAGLARSPIEGLPVSVKDLFDIAGFPTLGGSRLLADAPPAQRTAEVVQRLRQAGAVIVGTTNMTEFAYSGLGINPHYGTPRNPWQRDEGGGRIPGGSSSGAAISVTDGMAMAAIGSDTGGSVRIPSALCGLTGFKPTARRVSMEGVLPLSANLDSIGPLAPSVRCCATLDAILSGEPLGELHAAPLQGLRLLAPTNVVLDGMDATVAAAWERALSLLSQAGAHITHVVVAPFGELADINSKGGFTAAEAWAWHRHHIATRLSEYDPRVGTRILRGKDISAADYIDLLARRRQWIAAVSAQMADHDLIVMPTVPVVAPKIADLTQSDEAYFGANGLILRNPTLINFLDGCAISLPCHRAGEAPVGLSLAGLGGQDRRLLSVALAVEQLLASAQG</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="62" xmlns="http://uniprot.org/uniprot">
    <accession>A9BSW4</accession>
    <name>A9BSW4_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="4">SURF1-like protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="5" type="ordered locus">Daci_1681</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="6" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="4">Cell membrane</location>
            <topology evidence="4">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="4">Belongs to the SURF1 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="4">Lacks conserved residue(s) required for the propagation of feature annotation.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX34324.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012203609.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_1681"/>
    <dbReference type="PRIDE" id="A9BSW4"/>
    <dbReference type="EnsemblBacteria" id="ABX34324">
        <property type="protein sequence ID" value="ABX34324"/>
        <property type="gene ID" value="Daci_1681"/>
    </dbReference>
    <dbReference type="GeneID" id="60686168"/>
    <dbReference type="KEGG" id="dac:Daci_1681"/>
    <dbReference type="eggNOG" id="COG3346">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_047737_2_0_4"/>
    <dbReference type="OMA" id="NRGWLPW"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="CDD" id="cd06662">
        <property type="entry name" value="SURF1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002994">
        <property type="entry name" value="Surf1/Shy1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045214">
        <property type="entry name" value="Surf1/Surf4"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR23427">
        <property type="entry name" value="PTHR23427"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02104">
        <property type="entry name" value="SURF1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50895">
        <property type="entry name" value="SURF1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="3 4" id="KW-0472">Membrane</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1 4 5" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="2 4" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="4">
        <location>
            <begin position="225"/>
            <end position="243"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="RuleBase" id="RU363076"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="ABX34324.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="257" mass="29004" checksum="935D7008047063BE" modified="2008-01-15" version="1">MPDRWRFVLITLAALIGVAITLSLGRWQLQRAAYKQQLFDAVQRQQGLPPLDNAQLAPMQPGAALNTEAAPWLHRPVRLQGHWIAGQSLYLDNRQMQGQPGFFVLTPLRLAAPHEDVVIAVQRGWVPRNFLDRTALPEVQTPEGLVTVEGRMEAAPSRLYEFGRAGADPDGQKSRIRQNVDIAEWAVASGLPLREWSLLQTGEASEGLRRDWPVVTAGVEKHHGYAFQWFGLAALITLLYVWFQIVRRFVRPRHARS</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="89" xmlns="http://uniprot.org/uniprot">
    <accession>A9BSX7</accession>
    <name>A9BSX7_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="6">RNA polymerase sigma factor RpoH</fullName>
        </recommendedName>
        <alternativeName>
            <fullName evidence="6">RNA polymerase sigma-32 factor</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="6" type="primary">rpoH</name>
        <name evidence="9" type="ordered locus">Daci_1694</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="9 10" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="10" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="6">Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is involved in regulation of expression of heat shock genes.</text>
    </comment>
    <comment type="subunit">
        <text evidence="6">Interacts with the RNA polymerase core enzyme.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="6">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="6">Belongs to the sigma-70 factor family. RpoH subfamily.</text>
    </comment>
    <comment type="caution">
        <text evidence="6">Lacks conserved residue(s) required for the propagation of feature annotation.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX34337.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012203622.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_1694"/>
    <dbReference type="PRIDE" id="A9BSX7"/>
    <dbReference type="EnsemblBacteria" id="ABX34337">
        <property type="protein sequence ID" value="ABX34337"/>
        <property type="gene ID" value="Daci_1694"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_1694"/>
    <dbReference type="eggNOG" id="COG0568">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_014793_3_5_4"/>
    <dbReference type="OMA" id="YQRWLAE"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016987">
        <property type="term" value="F:sigma factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006352">
        <property type="term" value="P:DNA-templated transcription, initiation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009408">
        <property type="term" value="P:response to heat"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00961">
        <property type="entry name" value="Sigma70_RpoH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014284">
        <property type="entry name" value="RNA_pol_sigma-70_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000943">
        <property type="entry name" value="RNA_pol_sigma70"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007627">
        <property type="entry name" value="RNA_pol_sigma70_r2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007630">
        <property type="entry name" value="RNA_pol_sigma70_r4"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013325">
        <property type="entry name" value="RNA_pol_sigma_r2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013324">
        <property type="entry name" value="RNA_pol_sigma_r3/r4-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012759">
        <property type="entry name" value="RNA_pol_sigma_RpoH_proteobac"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04542">
        <property type="entry name" value="Sigma70_r2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04545">
        <property type="entry name" value="Sigma70_r4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00046">
        <property type="entry name" value="SIGMA70FCT"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF88659">
        <property type="entry name" value="SSF88659"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF88946">
        <property type="entry name" value="SSF88946"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR02392">
        <property type="entry name" value="rpoH_proteo"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR02937">
        <property type="entry name" value="sigma70-ECF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00715">
        <property type="entry name" value="SIGMA70_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00716">
        <property type="entry name" value="SIGMA70_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="6" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="4 6" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 6" id="KW-0731">Sigma factor</keyword>
    <keyword evidence="2 6" id="KW-0346">Stress response</keyword>
    <keyword evidence="5 6" id="KW-0804">Transcription</keyword>
    <keyword evidence="1 6" id="KW-0805">Transcription regulation</keyword>
    <feature type="domain" description="RNA_pol_sigma70" evidence="7">
        <location>
            <begin position="88"/>
            <end position="101"/>
        </location>
    </feature>
    <feature type="domain" description="RNA_pol_sigma70" evidence="8">
        <location>
            <begin position="280"/>
            <end position="306"/>
        </location>
    </feature>
    <feature type="DNA-binding region" description="H-T-H motif" evidence="6">
        <location>
            <begin position="281"/>
            <end position="300"/>
        </location>
    </feature>
    <feature type="region of interest" description="Sigma-70 factor domain-2" evidence="6">
        <location>
            <begin position="64"/>
            <end position="133"/>
        </location>
    </feature>
    <feature type="short sequence motif" description="Interaction with polymerase core subunit RpoC" evidence="6">
        <location>
            <begin position="88"/>
            <end position="91"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023015"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023016"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023082"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023163"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00961"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="PROSITE" id="PS00715"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="PROSITE" id="PS00716"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="ABX34337.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="314" mass="34774" checksum="A77F543757544C1B" modified="2008-01-15" version="1">MTNASGSIATTLAPANPWALVPPLGNLDAYISAVNRLPMLTLEEEQDYARKLKEHSDLDAAGRLVMSHLRLVVSISRQYLGYGLPHGDLIQEGNVGLMKAVKRFDPDQNVRLVSYAMHWIKAEIHEYILKNWRMVKVATTKAQRKLFFNLRSMKQGLKSDAAMAEDGAMLRDTLTSGEIDAVAEKLNVKREEVMEMETRLAGGDVLLDPSPSDDGEQAFGPIAYLADGAHEPTAMIESRQRDHLATDGIAMALDSLDDRSRRIVEERWLKVNDDGSGGMTLHELAAVYGVSAERIRQIEVAAMKKMKKALAEFA</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="32" xmlns="http://uniprot.org/uniprot">
    <accession>A9BT40</accession>
    <name>A9BT40_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Daci_1965</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="2" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX34605.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012203890.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_1965"/>
    <dbReference type="PRIDE" id="A9BT40"/>
    <dbReference type="EnsemblBacteria" id="ABX34605">
        <property type="protein sequence ID" value="ABX34605"/>
        <property type="gene ID" value="Daci_1965"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_1965"/>
    <dbReference type="eggNOG" id="ENOG5033D87">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_1701388_0_0_4"/>
    <dbReference type="OMA" id="YPLLQNF"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ABX34605.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="155" mass="17562" checksum="77733BFC9C8C270D" modified="2008-01-15" version="1">MGLVRYGYEFLESAFVMYERAAQPRPPLVPCPPIPVLYLLGHGLELTFKAFLLSKGVTLKHIRYELGHDLEWAFSSSKENGLGTVLQWQASDESALTLFNVMYKAKELEYIVTGAKTIPYYPLLQNFSIKLFDAVATPIGFRKRLATWTLDESPV</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="75" xmlns="http://uniprot.org/uniprot">
    <accession>A9BTM2</accession>
    <name>A9BTM2_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Ferredoxin</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ordered locus">Daci_2352</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="5" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>2Fe-2S cluster</name>
            <dbReference type="ChEBI" id="CHEBI:49601"/>
        </cofactor>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the adrenodoxin/putidaredoxin family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX34990.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012204272.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_2352"/>
    <dbReference type="PRIDE" id="A9BTM2"/>
    <dbReference type="EnsemblBacteria" id="ABX34990">
        <property type="protein sequence ID" value="ABX34990"/>
        <property type="gene ID" value="Daci_2352"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_2352"/>
    <dbReference type="eggNOG" id="COG0633">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_082632_5_1_4"/>
    <dbReference type="OMA" id="VFEDHIF"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051537">
        <property type="term" value="F:2 iron, 2 sulfur cluster binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0140647">
        <property type="term" value="P:P450-containing electron transport chain"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd00207">
        <property type="entry name" value="fer2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.10.20.30">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036010">
        <property type="entry name" value="2Fe-2S_ferredoxin-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001041">
        <property type="entry name" value="2Fe-2S_ferredoxin-type"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001055">
        <property type="entry name" value="Adrenodoxin"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018298">
        <property type="entry name" value="Adrenodoxin_Fe-S_BS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012675">
        <property type="entry name" value="Beta-grasp_dom_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR23426">
        <property type="entry name" value="PTHR23426"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00111">
        <property type="entry name" value="Fer2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00355">
        <property type="entry name" value="ADRENODOXIN"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54292">
        <property type="entry name" value="SSF54292"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51085">
        <property type="entry name" value="2FE2S_FER_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00814">
        <property type="entry name" value="ADX"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="2Fe-2S ferredoxin-type" evidence="3">
        <location>
            <begin position="2"/>
            <end position="105"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001939"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00010914"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="PROSITE" id="PS51085"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="ABX34990.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="106" mass="11196" checksum="8C4E7E60D15C00B5" modified="2008-01-15" version="1">MTTITFIEHSGREHVVLATDGQSLMRAAVSNGVPGIDAECGGACACATCHVYIHLEWLDRLGPAQGGEREMLDFALDVRGDSRLACQITVSPQLDGLVVGMPVAQS</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="62" xmlns="http://uniprot.org/uniprot">
    <accession>A9BTR5</accession>
    <name>A9BTR5_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="5">P-type conjugative transfer protein TrbG</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ordered locus">Daci_2691</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="6" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the TrbG/VirB9 family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX35329.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_003056120.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_2691"/>
    <dbReference type="PRIDE" id="A9BTR5"/>
    <dbReference type="EnsemblBacteria" id="ABX35329">
        <property type="protein sequence ID" value="ABX35329"/>
        <property type="gene ID" value="Daci_2691"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_2691"/>
    <dbReference type="eggNOG" id="COG3504">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_058585_1_0_4"/>
    <dbReference type="OMA" id="VSWEYPK"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="CDD" id="cd06911">
        <property type="entry name" value="VirB9_CagX_TrbG"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.40.2500">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010258">
        <property type="entry name" value="Conjugal_tfr_TrbG/VirB9/CagX"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014142">
        <property type="entry name" value="TrbG_Ti"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR033645">
        <property type="entry name" value="VirB9/CagX/TrbG_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038161">
        <property type="entry name" value="VirB9/CagX/TrbG_C_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03524">
        <property type="entry name" value="CagX"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR02775">
        <property type="entry name" value="TrbG_Ti"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 4" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="4">
        <location>
            <begin position="1"/>
            <end position="22"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5002736041" evidence="4">
        <location>
            <begin position="23"/>
            <end position="333"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="3">
        <location>
            <begin position="27"/>
            <end position="51"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="3">
        <location>
            <begin position="63"/>
            <end position="86"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00006135"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022729"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="ABX35329.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="333" mass="36261" checksum="15ECF0FD5AA2B7D5" modified="2008-01-15" version="1">MNDLFRKSALPVMLLASTVLFSGCATQGKPPPTISLDEPVQAQPLPEPPKPVEVVTVPQPLALPSQLKPLPETEEAKPAPEPADEKVRVSRANAEARVAPTREGYVNAIQVWPFTDGALYQLYAAVGRVTVVSLQPGEELVTVAAGDTVRWIVGDTSSGSGEALRVNVMVKPIRSGLKTNLVITTSRRTYLLELTSTEKTWMASVSWEYPKDKMLALQRQAQAASAAAPVDSGLSLEKIRFRYAISGSNPPWKPLRAFDDGEKVYIQFPPGIAQGELPPLFVIGAQGDGQLVNYRFRAPYYIVDRLFGAAELRLGGDKGDVVRIERTDGTRRN</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2021-09-29" version="62" xmlns="http://uniprot.org/uniprot">
    <accession>A9BTS5</accession>
    <name>A9BTS5_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="5">TRAG family protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ordered locus">Daci_2701</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="6" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the VirD4/TraG family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX35339.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012204566.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_2701"/>
    <dbReference type="EnsemblBacteria" id="ABX35339">
        <property type="protein sequence ID" value="ABX35339"/>
        <property type="gene ID" value="Daci_2701"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_2701"/>
    <dbReference type="eggNOG" id="COG3505">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_012039_0_1_4"/>
    <dbReference type="OMA" id="HAVKICL"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003688">
        <property type="entry name" value="TraG/VirD4"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02534">
        <property type="entry name" value="T4SS-DNA_transf"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-0472">Membrane</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="4" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="4">
        <location>
            <begin position="6"/>
            <end position="25"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="4">
        <location>
            <begin position="75"/>
            <end position="96"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="3">
        <location>
            <begin position="588"/>
            <end position="613"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="3">
        <location>
            <begin position="630"/>
            <end position="669"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00008806"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="ABX35339.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="669" mass="73411" checksum="7DD64DE3E2FC1138" modified="2008-01-15" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="47" xmlns="http://uniprot.org/uniprot">
    <accession>A9BTV2</accession>
    <name>A9BTV2_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Putative lipoprotein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Daci_2728</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="2" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX35366.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_003056199.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_2728"/>
    <dbReference type="PRIDE" id="A9BTV2"/>
    <dbReference type="EnsemblBacteria" id="ABX35366">
        <property type="protein sequence ID" value="ABX35366"/>
        <property type="gene ID" value="Daci_2728"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_2728"/>
    <dbReference type="eggNOG" id="COG3616">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_119528_1_1_4"/>
    <dbReference type="OMA" id="RMCLLAN"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR021341">
        <property type="entry name" value="DUF2958"/>
    </dbReference>
    <dbReference type="Pfam" id="PF11171">
        <property type="entry name" value="DUF2958"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0449">Lipoprotein</keyword>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ABX35366.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="115" mass="12744" checksum="10567E8763880D05" modified="2008-01-15" version="1">MNQLMTEDERKQLLEHGRVRAAGRAIDPLPVVRLFTPDAHATWLLVSLDPADGDTAHGLIDLGISMPELGEIKLSDLASIVGPSKQPVMRDRYFRAVRPLSEYLRLAQENGSVLD</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="88" xmlns="http://uniprot.org/uniprot">
    <accession>A9BTZ5</accession>
    <name>A9BTZ5_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">Histidine kinase</fullName>
            <ecNumber evidence="2">2.7.13.3</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="6" type="ordered locus">Daci_3072</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="7" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>ATP + protein L-histidine = ADP + protein N-phospho-L-histidine.</text>
            <dbReference type="EC" id="2.7.13.3"/>
        </reaction>
    </comment>
    <dbReference type="EC" id="2.7.13.3" evidence="2"/>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX35710.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012204916.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_3072"/>
    <dbReference type="PRIDE" id="A9BTZ5"/>
    <dbReference type="EnsemblBacteria" id="ABX35710">
        <property type="protein sequence ID" value="ABX35710"/>
        <property type="gene ID" value="Daci_3072"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_3072"/>
    <dbReference type="eggNOG" id="COG2205">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_000445_89_6_4"/>
    <dbReference type="OMA" id="CCGASAW"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000155">
        <property type="term" value="F:phosphorelay sensor kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd00082">
        <property type="entry name" value="HisKA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.565.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003594">
        <property type="entry name" value="HATPase_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036890">
        <property type="entry name" value="HATPase_C_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005467">
        <property type="entry name" value="His_kinase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003661">
        <property type="entry name" value="HisK_dim/P"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036097">
        <property type="entry name" value="HisK_dim/P_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004358">
        <property type="entry name" value="Sig_transdc_His_kin-like_C"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02518">
        <property type="entry name" value="HATPase_c"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00512">
        <property type="entry name" value="HisKA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00344">
        <property type="entry name" value="BCTRLSENSOR"/>
    </dbReference>
    <dbReference type="SMART" id="SM00387">
        <property type="entry name" value="HATPase_c"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00388">
        <property type="entry name" value="HisKA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47384">
        <property type="entry name" value="SSF47384"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55874">
        <property type="entry name" value="SSF55874"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50109">
        <property type="entry name" value="HIS_KIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="6" id="KW-0418">Kinase</keyword>
    <keyword evidence="4" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-0597">Phosphoprotein</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="6" id="KW-0808">Transferase</keyword>
    <keyword evidence="4" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="4" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="4">
        <location>
            <begin position="180"/>
            <end position="202"/>
        </location>
    </feature>
    <feature type="domain" description="Histidine kinase" evidence="5">
        <location>
            <begin position="274"/>
            <end position="489"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00000085"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00012438"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022553"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="PROSITE" id="PS50109"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="ABX35710.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="501" mass="54299" checksum="E0E2090D139CB529" modified="2008-01-15" version="1">MKLRLTLTQRLSLVFAVLLLVCSGTSAWMQLRASRMHELEVVQGLSRDVAESIARDAQLTDANGLMPGAVRSFFNQLMLVNPSVEVYLLDADGRIAGHAAPDGRVRRERVDLAPVHRLLEGGTLPILGDDPRSVEGRKVFSAAPLRVNGKDVGFIYVVLQGEAHDQLVAQGSANSVLSTALWSIGMVALLCLVAGLVAFALITRPLRRLTEEVAGFDIHGAPPDLPAPQPGAAQDSRDEIAVLDSAYRRMVARIGEQWRALTRQDQERRELIANVSHDLRTPLSSLHGYLETLLLKDAVLDATERRRYLGIALAQSQKVGELAQSLFELARLEYGFVQPEPEPFSMPDLVQDVFQKFELRAEARQVALRADFPPRLPVVQADLGMIERVLGNLLDNALRHTPGGGSIQVALAAAGNAVEVTVADTGPGISADLREGLFERPFTVGGARRGGGLGLRIVHRMLELHGCRIELVDQPGQGASFRFVLPAAAQATGADARPRQG</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="60" xmlns="http://uniprot.org/uniprot">
    <accession>A9BU47</accession>
    <name>A9BU47_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Extracellular solute-binding protein family 1</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_3124</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX35762.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012204963.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_3124"/>
    <dbReference type="PRIDE" id="A9BU47"/>
    <dbReference type="EnsemblBacteria" id="ABX35762">
        <property type="protein sequence ID" value="ABX35762"/>
        <property type="gene ID" value="Daci_3124"/>
    </dbReference>
    <dbReference type="GeneID" id="60687416"/>
    <dbReference type="KEGG" id="dac:Daci_3124"/>
    <dbReference type="eggNOG" id="COG1840">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_026974_3_1_4"/>
    <dbReference type="OMA" id="EWADWAS"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="1">
        <location>
            <begin position="1"/>
            <end position="34"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5002735808" evidence="1">
        <location>
            <begin position="35"/>
            <end position="345"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX35762.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="345" mass="37559" checksum="FE1404918253DBAE" modified="2008-01-15" version="1">MKLTALPFKLSFKPSFKRLALLAATTAVCGTALAQSAICYNCPPEWADWGTQIKAIKADTGITVPPDNKNSGQSLAQLVAEKASPVADVTYLGVTFAIQAQKDGVVAAYKPANWDQIPAGLKDPKGEWVTIHSGTLGFMVNKAALGGKPVPQSWADLLKPEYKGLVGYLDPASAFVGYVGAVAVNQAMGGTLDNFQPAIDYFKKLQKNEPIVPKQTSYARLLSGEIGILLDYDFNAYRARYKDKADVDFVIPKEGTVVMPYVMSLVNKAPHTDNGKKVLDYVLSDKGQSIWANAYLRPVRDVALPKEVAGHFLPASEYARATSVDYQKMADVQKGFSTRYLREVR</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="56" xmlns="http://uniprot.org/uniprot">
    <accession>A9BU54</accession>
    <name>A9BU54_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Gluconate transporter</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_3131</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX35769.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012204970.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_3131"/>
    <dbReference type="PRIDE" id="A9BU54"/>
    <dbReference type="EnsemblBacteria" id="ABX35769">
        <property type="protein sequence ID" value="ABX35769"/>
        <property type="gene ID" value="Daci_3131"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_3131"/>
    <dbReference type="eggNOG" id="COG2610">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_027949_0_0_4"/>
    <dbReference type="OMA" id="MVLPKGH"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015128">
        <property type="term" value="F:gluconate transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003474">
        <property type="entry name" value="Glcn_transporter"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30354">
        <property type="entry name" value="PTHR30354"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02447">
        <property type="entry name" value="GntP_permease"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF002746">
        <property type="entry name" value="Gluconate_transporter"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00791">
        <property type="entry name" value="gntP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="7"/>
            <end position="27"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="33"/>
            <end position="53"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="103"/>
            <end position="136"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="148"/>
            <end position="168"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="188"/>
            <end position="210"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="241"/>
            <end position="262"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="282"/>
            <end position="300"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="320"/>
            <end position="339"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="359"/>
            <end position="385"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="397"/>
            <end position="416"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="436"/>
            <end position="458"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX35769.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="462" mass="47707" checksum="954F9CFFA4AA5643" modified="2008-01-15" version="1">MSSFDTQLLLIALASVLVLVALIVSRIRLHPLLALLVVSIGVGFATGMAPGEIVKNLTNGAGKTLGAVGVVIALGAMLGKILADSGTTERLASAILQRTSERMIPWAMTLVAFVIGIPMFFEVGLVVMLPLIFSVARKLESNERFKGSAYVYVGVPVIAALAAMHGMVPPHPGPLTAIATLHTTVGPTMLYGFLAVIPAMVLGGPLYGAFITPRMSTRPDAALLEQFTSGKKEGGQGSAPSIGMGVLCALLPALLMLVHALAEVLLPKDSGLLHAAAFLGNPLVAMLLGVVFASITLGYLRGADAEKLRDALGQSLKPIAGIMLIIAGGGAFQQILTSAKVGDAIVHMTQQFALPPLVLGWMIAMLLSVSTGSATVGIVGAAGLLAPLAASDPSLNVPLLALAIGCGSLFFNYANHAGFWMVKESFGMSMGEATKTITVVQSIVSFVGLLMVLLFNLLPKLG</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="62" xmlns="http://uniprot.org/uniprot">
    <accession>A9BU89</accession>
    <name>A9BU89_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="3">AMP-dependent synthetase and ligase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Daci_3166</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="4" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX35804.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012205005.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_3166"/>
    <dbReference type="PRIDE" id="A9BU89"/>
    <dbReference type="EnsemblBacteria" id="ABX35804">
        <property type="protein sequence ID" value="ABX35804"/>
        <property type="gene ID" value="Daci_3166"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_3166"/>
    <dbReference type="eggNOG" id="COG0318">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_000022_59_0_4"/>
    <dbReference type="OMA" id="HMVPTQF"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016874">
        <property type="term" value="F:ligase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.300.30">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.12780">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025110">
        <property type="entry name" value="AMP-bd_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045851">
        <property type="entry name" value="AMP-bd_C_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020845">
        <property type="entry name" value="AMP-binding_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000873">
        <property type="entry name" value="AMP-dep_Synth/Lig"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR042099">
        <property type="entry name" value="ANL_N_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00501">
        <property type="entry name" value="AMP-binding"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13193">
        <property type="entry name" value="AMP-binding_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00455">
        <property type="entry name" value="AMP_BINDING"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-0436">Ligase</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="AMP-binding" evidence="1">
        <location>
            <begin position="6"/>
            <end position="400"/>
        </location>
    </feature>
    <feature type="domain" description="AMP-binding_C" evidence="2">
        <location>
            <begin position="409"/>
            <end position="483"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF00501"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF13193"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ABX35804.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="501" mass="55526" checksum="C08F292D8796851B" modified="2008-01-15" version="1">MSNAATPHSTLVFEQRTLTGAAQQQRGRQLAQGLRSLGLAEGDVLAVFLRNGIEYADVVHACRIAGIYYCPVNWHFTATEIDYILADSGARALITSQDLLDGLKGELYADLPRRVAHAREPEQDYETWLAAQAPYDGPLVAPRGHMAYTSGTTGRPKGVLRKAFPVEELPRRLAVNQALIATAYGLQPGARTLLTAPIYHSAPSLYFQNALMLSELVVLEQRFDPERFLQLVQEHRIDTAYMVPIMYVRLLRLPREVRERYDISSLRFIASTGSPCAPEVKKAMIEWMGPIINETYASSESGLVTFIGSADALTHPGSAGLPLQDAEVRILDRQGQGLPTGEVGLIYVRQPAYADFTYKGNEEARRKMDQGGLITLGDMGYLDEEGFLYVCDRDSDMVISGGVNIYPAEIENELLRHPGIADCAVIGVPDAEYGERLLALVEPGQSGTLPEAELKEWLRGRLAAYKLPRSFVFQRLPRDDNGKIAKRKLRDAHWGATQRKI</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2021-06-02" version="39" xmlns="http://uniprot.org/uniprot">
    <accession>A9BUD3</accession>
    <name>A9BUD3_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_1191</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX33836.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012203122.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="ABX33836">
        <property type="protein sequence ID" value="ABX33836"/>
        <property type="gene ID" value="Daci_1191"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_1191"/>
    <dbReference type="eggNOG" id="ENOG5032GC4">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_1801895_0_0_4"/>
    <dbReference type="OMA" id="RIVPECQ"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="102"/>
            <end position="149"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Pro residues" evidence="1">
        <location>
            <begin position="118"/>
            <end position="134"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX33836.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="159" mass="14802" checksum="000E1E0CB9B81622" modified="2008-01-15" version="1">MPVPSSAFMTSQPSRKAAWPALGACALLLAGCGSVGGGVGIGIPVGPVSVGVGLGSGGLSAGVGTGVGPVGVGVGVNQSGQVLGSAGVGASTGVGGARVGVGVGSSTVLHDPQRSNVQPAPAPAPEPAPAAPPQAPAGQVQWRDASGQVVPTCRVDGRC</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="49" xmlns="http://uniprot.org/uniprot">
    <accession>A9BUF5</accession>
    <name>A9BUF5_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">CRISPR-associated protein, Csy2 family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_1214</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX33858.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012203144.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_1214"/>
    <dbReference type="PRIDE" id="A9BUF5"/>
    <dbReference type="EnsemblBacteria" id="ABX33858">
        <property type="protein sequence ID" value="ABX33858"/>
        <property type="gene ID" value="Daci_1214"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_1214"/>
    <dbReference type="eggNOG" id="ENOG502Z9HE">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_073578_0_0_4"/>
    <dbReference type="OMA" id="MWALERK"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013398">
        <property type="entry name" value="CRISPR-assoc_prot_Csy2"/>
    </dbReference>
    <dbReference type="Pfam" id="PF09614">
        <property type="entry name" value="Cas_Csy2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR02565">
        <property type="entry name" value="cas_Csy2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="340"/>
            <end position="362"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX33858.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="362" mass="39935" checksum="FE0E329BD848D4D4" modified="2008-01-15" version="1">MTQSPQPQAILTFPHLRVQNANAISSPLTHGFPSITAFTGLMWALERKLAQAGIPLRLHAVGVVCHHHQEQVTQGYVRSFNLTRNPVDKDGSTAAIVEEGRIHLDISLVFTVSEKRVPGSNSAPTLVQSAAEPMQQWADEAGQILSQMRVAGGSLLPSRAAPGRRVRPRLSVLAEDATERSRQFREWRRQWLPGFALVGRDDLLADRLHRLRDKAAHTTLLDAWLHASRFNHEPVSAAEGQPPPADGKHPWADPWRGPGSGWIVPVPVGYAALSPSHAAGEVLNARDATTPLRFVESVYSLGEWISPHRLTHLEQLLWHAHTDEKRGLYRCRSGYVPDPAAVADPDDAAAQEQEDDDSYAYT</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="51" xmlns="http://uniprot.org/uniprot">
    <accession>A9BUP1</accession>
    <name>A9BUP1_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_1505</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX34149.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012203435.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_1505"/>
    <dbReference type="PRIDE" id="A9BUP1"/>
    <dbReference type="EnsemblBacteria" id="ABX34149">
        <property type="protein sequence ID" value="ABX34149"/>
        <property type="gene ID" value="Daci_1505"/>
    </dbReference>
    <dbReference type="GeneID" id="60686044"/>
    <dbReference type="KEGG" id="dac:Daci_1505"/>
    <dbReference type="eggNOG" id="ENOG5033BBV">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_168222_1_0_4"/>
    <dbReference type="OMA" id="WYCSQAH"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="19"/>
            <end position="45"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX34149.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="86" mass="9526" checksum="9D4596DEE2AFBF21" modified="2008-01-15" version="1">MKYLLVLIVIIIAVGVWRSQRRAEARERRQAAAPRNPANPANAPLAAPQDMVECAHCGLHLPRSEAIEAAGRSYCSAEHRTLAQRR</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="45" xmlns="http://uniprot.org/uniprot">
    <accession>A9BUS3</accession>
    <name>A9BUS3_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_1537</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the UPF0167 family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX34181.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_1537"/>
    <dbReference type="PRIDE" id="A9BUS3"/>
    <dbReference type="EnsemblBacteria" id="ABX34181">
        <property type="protein sequence ID" value="ABX34181"/>
        <property type="gene ID" value="Daci_1537"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_1537"/>
    <dbReference type="eggNOG" id="COG3196">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_167635_0_0_4"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005363">
        <property type="entry name" value="UPF0167"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03691">
        <property type="entry name" value="UPF0167"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00008525"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX34181.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="114" mass="12802" checksum="EF121F7AA0F96E09" modified="2008-01-15" version="1">MPGTDIEGVSPDPADPEPTIARELLLEIAQRTPGYRAWQQPVWLTHCNTPCVFLGHADRQAVEPFLAEVLPDIEGSYRNDAQWMLERMSTDGMISGCLFQCVHCGRHRLHMDVG</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="56" xmlns="http://uniprot.org/uniprot">
    <accession>A9BUS8</accession>
    <name>A9BUS8_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ordered locus">Daci_1542</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="5" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Periplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the UPF0065 (bug) family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX34186.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012203472.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_1542"/>
    <dbReference type="PRIDE" id="A9BUS8"/>
    <dbReference type="EnsemblBacteria" id="ABX34186">
        <property type="protein sequence ID" value="ABX34186"/>
        <property type="gene ID" value="Daci_1542"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_1542"/>
    <dbReference type="eggNOG" id="COG3181">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_045683_1_2_4"/>
    <dbReference type="OMA" id="SEAPHIQ"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0042597">
        <property type="term" value="C:periplasmic space"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.190.150">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005064">
        <property type="entry name" value="BUG"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR042100">
        <property type="entry name" value="Bug_dom1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR42928">
        <property type="entry name" value="PTHR42928"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03401">
        <property type="entry name" value="TctC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF017082">
        <property type="entry name" value="YflP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="3">
        <location>
            <begin position="1"/>
            <end position="28"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5002732540" evidence="3">
        <location>
            <begin position="29"/>
            <end position="331"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004418"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00006987"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="ABX34186.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="331" mass="34198" checksum="42A524617D090701" modified="2008-01-15" version="1">MAFSLRGRRLWTLAACALLAGASGLWLAAPGKAGTRLERPITIVVTFPPGGGTDLLARRLGEQLQQRLGQPVVVENRPGASGNIGAHAVAQAAADGSTLLMANSSFAINPGVYERLDFDPRKDFTAVFNAGSIASVLVVPADSALQTLEDALAQARQERPLLFASCGNGTPQHLAGEMLARDAKRFVQHVPYKGCGPAITAVAAGQVAAGMVTASSAAAMIAAGRVRALAVTAPQRLPQLAGVPTVAERGLPGFAVEQWHGLLAPAATPRATVQALHDTLEQALADPAVSAGLRDQGYTLARQTPGQFQALIAADIDRYAAVTRALGLKAD</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="44" xmlns="http://uniprot.org/uniprot">
    <accession>A9BV78</accession>
    <name>A9BV78_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Daci_2102</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="2" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX34742.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012204025.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_2102"/>
    <dbReference type="PRIDE" id="A9BV78"/>
    <dbReference type="EnsemblBacteria" id="ABX34742">
        <property type="protein sequence ID" value="ABX34742"/>
        <property type="gene ID" value="Daci_2102"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_2102"/>
    <dbReference type="eggNOG" id="ENOG5033I1V">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_175513_1_0_4"/>
    <dbReference type="OMA" id="YKHLPFP"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ABX34742.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="106" mass="11224" checksum="1B6B9D019552DA27" modified="2008-01-15" version="1">MRFNQTIQVVGMKASKGTLENGTAYDSTKVYALIDLDTSKGNAKGASATEFNLGTAAEFEAYKHLPFPFVADVEMEMVSNGKTMKTVMHKLTPKAVAGGSKSAAAT</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="82" xmlns="http://uniprot.org/uniprot">
    <accession>A9BVJ5</accession>
    <name>A9BVJ5_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="7">Succinate dehydrogenase iron-sulfur subunit</fullName>
            <ecNumber evidence="7">1.3.5.1</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="10" type="ordered locus">Daci_2424</name>
    </gene>
    <organism evidence="10 11">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="10 11" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="11">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="11" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="11">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="7">
            <text>a quinone + succinate = a quinol + fumarate</text>
            <dbReference type="Rhea" id="RHEA:40523"/>
            <dbReference type="ChEBI" id="CHEBI:24646"/>
            <dbReference type="ChEBI" id="CHEBI:29806"/>
            <dbReference type="ChEBI" id="CHEBI:30031"/>
            <dbReference type="ChEBI" id="CHEBI:132124"/>
            <dbReference type="EC" id="1.3.5.1"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="7">
            <name>2Fe-2S cluster</name>
            <dbReference type="ChEBI" id="CHEBI:49601"/>
        </cofactor>
        <text evidence="7">Binds 1 [2Fe-2S] cluster.</text>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="7">
            <name>[3Fe-4S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:21137"/>
        </cofactor>
        <text evidence="7">Binds 1 [3Fe-4S] cluster.</text>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="7">
            <name>[4Fe-4S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:49883"/>
        </cofactor>
        <text evidence="7">Binds 1 [4Fe-4S] cluster.</text>
    </comment>
    <comment type="similarity">
        <text evidence="1 7">Belongs to the succinate dehydrogenase/fumarate reductase iron-sulfur protein family.</text>
    </comment>
    <dbReference type="EC" id="1.3.5.1" evidence="7"/>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX35062.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012204344.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_2424"/>
    <dbReference type="PRIDE" id="A9BVJ5"/>
    <dbReference type="EnsemblBacteria" id="ABX35062">
        <property type="protein sequence ID" value="ABX35062"/>
        <property type="gene ID" value="Daci_2424"/>
    </dbReference>
    <dbReference type="GeneID" id="60686794"/>
    <dbReference type="KEGG" id="dac:Daci_2424"/>
    <dbReference type="eggNOG" id="COG0479">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_044838_0_2_4"/>
    <dbReference type="OMA" id="DGQYFGP"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051537">
        <property type="term" value="F:2 iron, 2 sulfur cluster binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051538">
        <property type="term" value="F:3 iron, 4 sulfur cluster binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051539">
        <property type="term" value="F:4 iron, 4 sulfur cluster binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009055">
        <property type="term" value="F:electron transfer activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008177">
        <property type="term" value="F:succinate dehydrogenase (ubiquinone) activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006099">
        <property type="term" value="P:tricarboxylic acid cycle"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.1060.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.10.20.30">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036010">
        <property type="entry name" value="2Fe-2S_ferredoxin-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001041">
        <property type="entry name" value="2Fe-2S_ferredoxin-type"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017896">
        <property type="entry name" value="4Fe4S_Fe-S-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017900">
        <property type="entry name" value="4Fe4S_Fe_S_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012675">
        <property type="entry name" value="Beta-grasp_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009051">
        <property type="entry name" value="Helical_ferredxn"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004489">
        <property type="entry name" value="Succ_DH/fum_Rdtase_Fe-S"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025192">
        <property type="entry name" value="Succ_DH/fum_Rdtase_N"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13085">
        <property type="entry name" value="Fer2_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54292">
        <property type="entry name" value="SSF54292"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00384">
        <property type="entry name" value="dhsB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51085">
        <property type="entry name" value="2FE2S_FER_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00198">
        <property type="entry name" value="4FE4S_FER_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51379">
        <property type="entry name" value="4FE4S_FER_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="7" id="KW-0001">2Fe-2S</keyword>
    <keyword evidence="6 7" id="KW-0003">3Fe-4S</keyword>
    <keyword evidence="7" id="KW-0004">4Fe-4S</keyword>
    <keyword evidence="4 7" id="KW-0408">Iron</keyword>
    <keyword evidence="5 7" id="KW-0411">Iron-sulfur</keyword>
    <keyword evidence="3 7" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="10" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="11" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0816">Tricarboxylic acid cycle</keyword>
    <feature type="domain" description="2Fe-2S ferredoxin-type" evidence="8">
        <location>
            <begin position="5"/>
            <end position="93"/>
        </location>
    </feature>
    <feature type="domain" description="4Fe-4S ferredoxin-type" evidence="9">
        <location>
            <begin position="135"/>
            <end position="165"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00009433"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022532"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023004"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023014"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023291"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="RuleBase" id="RU361237"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="PROSITE" id="PS51085"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="9">
        <source>
            <dbReference type="PROSITE" id="PS51379"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="EMBL" id="ABX35062.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="234" mass="26791" checksum="8B44F3096B25FAE9" modified="2008-01-15" version="1">MKRTFKIYRYDPDKDAKPYMQTVEVELDGHERMLLDALVKLKEMDPSISFRRSCREGVCGSDAMNINGKNGLACLTNMKTLQGDIVLKPLPGLPVIRDLIVDMTQFFKQYHSIKPYLQNDSFASPTKERLQSPEEREELNGLYECILCASCSTSCPSFWWNPDKFVGPAGLLQAYRFIADSRDEATGDRLDNLEDPYRLFRCHTIMNCVDVCPKHLNPTQAIGKIKELMVRRAI</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="83" xmlns="http://uniprot.org/uniprot">
    <accession>A9BVW1</accession>
    <name>A9BVW1_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Transcriptional regulator, LysR family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Daci_2836</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="4" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the LysR transcriptional regulatory family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX35474.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012204684.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="PRIDE" id="A9BVW1"/>
    <dbReference type="EnsemblBacteria" id="ABX35474">
        <property type="protein sequence ID" value="ABX35474"/>
        <property type="gene ID" value="Daci_2836"/>
    </dbReference>
    <dbReference type="GeneID" id="60687101"/>
    <dbReference type="KEGG" id="dac:Daci_2836"/>
    <dbReference type="eggNOG" id="COG0583">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_063829_0_1_4"/>
    <dbReference type="OMA" id="WRNGGQL"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003700">
        <property type="term" value="F:DNA-binding transcription factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017685">
        <property type="entry name" value="ArgP"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005119">
        <property type="entry name" value="LysR_subst-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000847">
        <property type="entry name" value="Tscrpt_reg_HTH_LysR"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036390">
        <property type="entry name" value="WH_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00126">
        <property type="entry name" value="HTH_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03466">
        <property type="entry name" value="LysR_substrate"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00039">
        <property type="entry name" value="HTHLYSR"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46785">
        <property type="entry name" value="SSF46785"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR03298">
        <property type="entry name" value="argP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50931">
        <property type="entry name" value="HTH_LYSR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HTH lysR-type" evidence="2">
        <location>
            <begin position="2"/>
            <end position="58"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00009437"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS50931"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ABX35474.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="301" mass="33148" checksum="13889242F98415A7" modified="2008-01-15" version="1">MLDYAGLEALAAVVREGSFERAARKLHVTPSAVSQRIKLLEERVGQVLVLRGQPCSGTDAGRRLCLHLEQVALLENDLRRKNPELVPEGQTALPTLKLAVNADSLSTWFMDAMSAFTRDGNELLDISIDDQDHTAKRIREGEVLAAVTATSSAIPGCNTWPLGRMRYVAAASPDFIRRYLKDGITPEAMARTPMMSYGRKDSLQDQWLQRLGAEGRRNTPRHFLPSNQGYTRACELGMGWGMHPPLMIGAQLAEGSLVELLPGNDLDIPMYWAHARNAQASLQRLTDCVIQAAAACLDPME</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="88" xmlns="http://uniprot.org/uniprot">
    <accession>A9BVW8</accession>
    <name>A9BVW8_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Transcriptional regulator, GntR family with aminotransferase domain</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ordered locus">Daci_2843</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="5" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">In the C-terminal section; belongs to the class-I pyridoxal-phosphate-dependent aminotransferase family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX35481.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012204691.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="PRIDE" id="A9BVW8"/>
    <dbReference type="EnsemblBacteria" id="ABX35481">
        <property type="protein sequence ID" value="ABX35481"/>
        <property type="gene ID" value="Daci_2843"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_2843"/>
    <dbReference type="eggNOG" id="COG1167">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_017584_0_0_4"/>
    <dbReference type="OMA" id="VRAVYTM"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003700">
        <property type="term" value="F:DNA-binding transcription factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030170">
        <property type="term" value="F:pyridoxal phosphate binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008483">
        <property type="term" value="F:transaminase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009058">
        <property type="term" value="P:biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd07377">
        <property type="entry name" value="WHTH_GntR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.640.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004839">
        <property type="entry name" value="Aminotransferase_I/II"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015424">
        <property type="entry name" value="PyrdxlP-dep_Trfase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015421">
        <property type="entry name" value="PyrdxlP-dep_Trfase_major"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000524">
        <property type="entry name" value="Tscrpt_reg_HTH_GntR"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036390">
        <property type="entry name" value="WH_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00155">
        <property type="entry name" value="Aminotran_1_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00392">
        <property type="entry name" value="GntR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00345">
        <property type="entry name" value="HTH_GNTR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46785">
        <property type="entry name" value="SSF46785"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53383">
        <property type="entry name" value="SSF53383"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50949">
        <property type="entry name" value="HTH_GNTR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-0032">Aminotransferase</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="HTH gntR-type" evidence="3">
        <location>
            <begin position="3"/>
            <end position="71"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="71"/>
            <end position="93"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="2">
        <location>
            <begin position="71"/>
            <end position="85"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00005384"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="PROSITE" id="PS50949"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="ABX35481.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="446" mass="48541" checksum="9ADCF55D671F0AB1" modified="2008-01-15" version="1">MAASRVALLTERLAEDIRAGLLAPGTLMPTHRDLAARHGMAVASASKVYARLASLGLVIGETGRGTFVRDRPQQREWDGGDESRLSSDTADLSFNHPTWPGQAGLLRSMLRELAASGDLAALMHQQPPGGRLHERRIVADFLARERGLAAEPERIFLVNGAQQGLDVAVRALLRPGDAVAVDALTYPGFRMLAELQDLDLQPVPALDEGPDLDALERLCARRRIRAIHAMPTLHNPLGWVMPLAQRQRLVEIARRHDCLLIEDAAYAFLAGKAPAALATLAPERCIHVSSLSKSVASGLRFGFMVVPQAWAGRVKAVVRASHWSMPGLVTAMATRWMASGSVRQQEQRMRQEARRRQAIARKALAGMQMLAHPCSLFLWLRLPGELRMDRVATALAQCGIAVSQAHAYATTPHAPHALRLGLGSVPLPQLEAVLVQLRDTVEGFPP</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="65" xmlns="http://uniprot.org/uniprot">
    <accession>A9BW01</accession>
    <name>A9BW01_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">D-tagatose-bisphosphate aldolase, class II, non-catalytic subunit</fullName>
            <ecNumber evidence="2">4.2.1.40</ecNumber>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_3179</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="pathway">
        <text evidence="1">Carbohydrate metabolism.</text>
    </comment>
    <dbReference type="EC" id="4.2.1.40" evidence="2"/>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX35817.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012205017.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_3179"/>
    <dbReference type="PRIDE" id="A9BW01"/>
    <dbReference type="EnsemblBacteria" id="ABX35817">
        <property type="protein sequence ID" value="ABX35817"/>
        <property type="gene ID" value="Daci_3179"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_3179"/>
    <dbReference type="eggNOG" id="COG4573">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_053334_0_0_4"/>
    <dbReference type="OMA" id="QRHFSYS"/>
    <dbReference type="UniPathway" id="UPA00157">
        <property type="reaction ID" value="UER00262"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008872">
        <property type="term" value="F:glucarate dehydratase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005975">
        <property type="term" value="P:carbohydrate metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.20.20.70">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013785">
        <property type="entry name" value="Aldolase_TIM"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012062">
        <property type="entry name" value="GatZ/KbaZ-like"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08013">
        <property type="entry name" value="GatZ_KbaZ-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF009264">
        <property type="entry name" value="TagBP_ald_AgaZ"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR02810">
        <property type="entry name" value="agaZ_gatZ"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0456">Lyase</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00005007"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX35817.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="457" mass="49473" checksum="D03803CA204B88AF" modified="2008-01-15" version="1">MPAHLTHPTHLTHFTRLAQSRSRQTPAAAGDARATGSALGIYSICSAHPLVIEAAMHQALDDGTPLLVEATANQVNQFGGYTGMQPADFRRFVLAIAHRVGLPPDRVLLGGDHLGPTAWTHLPAAEAMDLAQDLVHAYAAAGFVKLHLDASMACADDPQALDDETVARRAALLCQAAERGSTCPAPGPVYVIGTEVPVPGGAAHALEHVQVTARADAQRTLQVHREVFAQQGLDPVWPRVIAMVVQPGVEFDHTRVVDYAPGEAADLKQLLRQHPQLVFEAHSTDYQRPEALRQLVQDGFAILKVGPGATFALREVLFALAAIEEQLIDAHQRSHLPAVLESAMLGRPASWERYYRGEQPDPGAQRLLRIYSYSDRIRYYWADPTVNAAVARLLDNLSACTLPENMLSQFLPAQYQAVRAGRLAPSPHALVLDRVREAIRPYAAACGHSLTAAPPPP</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2021-06-02" version="36" xmlns="http://uniprot.org/uniprot">
    <accession>A9BW35</accession>
    <name>A9BW35_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_3213</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX35851.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012205051.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_3213"/>
    <dbReference type="EnsemblBacteria" id="ABX35851">
        <property type="protein sequence ID" value="ABX35851"/>
        <property type="gene ID" value="Daci_3213"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_3213"/>
    <dbReference type="eggNOG" id="ENOG5032XXT">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_1925718_0_0_4"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="45"/>
            <end position="70"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX35851.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="131" mass="14513" checksum="39A69F4E30BC6E70" modified="2008-01-15" version="1">MTPEQKLKHAILLLAAKWKDITLAADAEITAENVDALYEEHDEGGMLQDARSELRSTGEETGLSAPGSRNYETEAVAKQMPDGSWVGWTHYYGGGKHSEPDAIPWMEDAYDLTCTEEQITVTKRTFARVPA</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="56" xmlns="http://uniprot.org/uniprot">
    <accession>A9BW62</accession>
    <name>A9BW62_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_3240</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX35878.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012205078.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_3240"/>
    <dbReference type="PRIDE" id="A9BW62"/>
    <dbReference type="EnsemblBacteria" id="ABX35878">
        <property type="protein sequence ID" value="ABX35878"/>
        <property type="gene ID" value="Daci_3240"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_3240"/>
    <dbReference type="eggNOG" id="ENOG5031I90">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_086656_0_0_4"/>
    <dbReference type="OMA" id="AGQKTMK"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="204"/>
            <end position="232"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX35878.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="244" mass="25480" checksum="D86FDDD39A8F3927" modified="2008-01-15" version="1">MKLKLDSNGAVVLQDGAPVYIKDDGTEIAFDGAKAFAKIGELTGQSAAYRKRFEDAESKLKGFEGIADPDAARKALETLQSLDQKKLIDAGEVEKVKAEISKAFQAQLDAANGTASKLEQQLYAEMIGGSFARSKFALDKLAIPPDLVQAYFGKAFSIEEGKVVAKDANGNKLYSAASPGDLAGFDEALEMLVNQYPGKDHILKGSGASGSGAQGGHGGGKQQGNFGGSKAERVAAMKQLTSGA</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="70" xmlns="http://uniprot.org/uniprot">
    <accession>A9BWD5</accession>
    <name>A9BWD5_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Pyridoxal-5'-phosphate-dependent protein beta subunit</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ordered locus">Daci_3519</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="5" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>pyridoxal 5'-phosphate</name>
            <dbReference type="ChEBI" id="CHEBI:597326"/>
        </cofactor>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX36155.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_3519"/>
    <dbReference type="PRIDE" id="A9BWD5"/>
    <dbReference type="EnsemblBacteria" id="ABX36155">
        <property type="protein sequence ID" value="ABX36155"/>
        <property type="gene ID" value="Daci_3519"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_3519"/>
    <dbReference type="eggNOG" id="COG1171">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_021152_4_2_4"/>
    <dbReference type="OMA" id="FKFRGGW"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030170">
        <property type="term" value="F:pyridoxal phosphate binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006520">
        <property type="term" value="P:cellular amino acid metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.1100">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001926">
        <property type="entry name" value="PLP-dep"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000634">
        <property type="entry name" value="Ser/Thr_deHydtase_PyrdxlP-BS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036052">
        <property type="entry name" value="Trypto_synt_PLP_dependent"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00291">
        <property type="entry name" value="PALP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53686">
        <property type="entry name" value="SSF53686"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00165">
        <property type="entry name" value="DEHYDRATASE_SER_THR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0663">Pyridoxal phosphate</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="PALP" evidence="3">
        <location>
            <begin position="38"/>
            <end position="325"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001933"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022898"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF00291"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="ABX36155.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="339" mass="36256" checksum="9523943BF2D988B3" modified="2008-01-15" version="1">MIESASIHFAEPHAMTTNSPPSLPTYDDVAAAAGRLEGVAHRTPILRSRTADELLGAQLFFKCENLQRTGAFKIRGAYNALSQFTPEQRKRGALAFSSGNHAQAVALAAQMLDMPALIVMPEDAPASKMAATRSYGAQVVTYDRFTEDREAISRRLADERGMTLIPPFNHRDVIAGQGTAAKELFEEVPDLDYLFVCLGGGGLLSGSLLAAGQLAPRCKVYGVEPQAGDDARQSLRAGQIVQIPTPHTIADGAQTQSIGDITFAIIREHVEDILAVADEHLVQAMRFYAERKKIVVEPTGALSLAGALHGGVALSGARVGILISGGNVDLARYARFLHD</sequence>
</entry>
<entry dataset="Swiss-Prot" created="2009-04-14" modified="2022-08-03" version="80" xmlns="http://uniprot.org/uniprot">
    <accession>A9BWT7</accession>
    <name>FOLD_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Bifunctional protein FolD</fullName>
        </recommendedName>
        <domain>
            <recommendedName>
                <fullName evidence="1">Methylenetetrahydrofolate dehydrogenase</fullName>
                <ecNumber evidence="1">1.5.1.5</ecNumber>
            </recommendedName>
        </domain>
        <domain>
            <recommendedName>
                <fullName evidence="1">Methenyltetrahydrofolate cyclohydrolase</fullName>
                <ecNumber evidence="1">3.5.4.9</ecNumber>
            </recommendedName>
        </domain>
    </protein>
    <gene>
        <name evidence="1" type="primary">folD</name>
        <name type="ordered locus">Daci_3983</name>
    </gene>
    <organism>
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference key="1">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain>DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="1">Catalyzes the oxidation of 5,10-methylenetetrahydrofolate to 5,10-methenyltetrahydrofolate and then the hydrolysis of 5,10-methenyltetrahydrofolate to 10-formyltetrahydrofolate.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>(6R)-5,10-methylene-5,6,7,8-tetrahydrofolate + NADP(+) = 5,10-methenyltetrahydrofolate + NADPH</text>
            <dbReference type="Rhea" id="RHEA:22812"/>
            <dbReference type="ChEBI" id="CHEBI:15636"/>
            <dbReference type="ChEBI" id="CHEBI:57455"/>
            <dbReference type="ChEBI" id="CHEBI:57783"/>
            <dbReference type="ChEBI" id="CHEBI:58349"/>
            <dbReference type="EC" id="1.5.1.5"/>
        </reaction>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>5,10-methenyltetrahydrofolate + H2O = (6S)-10-formyltetrahydrofolate + H(+)</text>
            <dbReference type="Rhea" id="RHEA:23700"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:57454"/>
            <dbReference type="ChEBI" id="CHEBI:57455"/>
            <dbReference type="EC" id="3.5.4.9"/>
        </reaction>
    </comment>
    <comment type="pathway">
        <text evidence="1">One-carbon metabolism; tetrahydrofolate interconversion.</text>
    </comment>
    <comment type="subunit">
        <text evidence="1">Homodimer.</text>
    </comment>
    <comment type="similarity">
        <text evidence="1">Belongs to the tetrahydrofolate dehydrogenase/cyclohydrolase family.</text>
    </comment>
    <dbReference type="EC" id="1.5.1.5" evidence="1"/>
    <dbReference type="EC" id="3.5.4.9" evidence="1"/>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX36614.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012205808.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A9BWT7"/>
    <dbReference type="SMR" id="A9BWT7"/>
    <dbReference type="STRING" id="398578.Daci_3983"/>
    <dbReference type="PRIDE" id="A9BWT7"/>
    <dbReference type="EnsemblBacteria" id="ABX36614">
        <property type="protein sequence ID" value="ABX36614"/>
        <property type="gene ID" value="Daci_3983"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_3983"/>
    <dbReference type="eggNOG" id="COG0190">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_034045_2_1_4"/>
    <dbReference type="OMA" id="HIVGRPM"/>
    <dbReference type="UniPathway" id="UPA00193"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004477">
        <property type="term" value="F:methenyltetrahydrofolate cyclohydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004488">
        <property type="term" value="F:methylenetetrahydrofolate dehydrogenase (NADP+) activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000105">
        <property type="term" value="P:histidine biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009086">
        <property type="term" value="P:methionine biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006164">
        <property type="term" value="P:purine nucleotide biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0035999">
        <property type="term" value="P:tetrahydrofolate interconversion"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniPathway"/>
    </dbReference>
    <dbReference type="CDD" id="cd01080">
        <property type="entry name" value="NAD_bind_m-THF_DH_Cyclohyd"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01576">
        <property type="entry name" value="THF_DHG_CYH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR046346">
        <property type="entry name" value="Aminiacid_DH-like_N_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036291">
        <property type="entry name" value="NAD(P)-bd_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000672">
        <property type="entry name" value="THF_DH/CycHdrlase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020630">
        <property type="entry name" value="THF_DH/CycHdrlase_cat_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020867">
        <property type="entry name" value="THF_DH/CycHdrlase_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020631">
        <property type="entry name" value="THF_DH/CycHdrlase_NAD-bd_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00763">
        <property type="entry name" value="THF_DHG_CYH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02882">
        <property type="entry name" value="THF_DHG_CYH_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00085">
        <property type="entry name" value="THFDHDRGNASE"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51735">
        <property type="entry name" value="SSF51735"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53223">
        <property type="entry name" value="SSF53223"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00766">
        <property type="entry name" value="THF_DHG_CYH_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00767">
        <property type="entry name" value="THF_DHG_CYH_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword id="KW-0028">Amino-acid biosynthesis</keyword>
    <keyword id="KW-0368">Histidine biosynthesis</keyword>
    <keyword id="KW-0378">Hydrolase</keyword>
    <keyword id="KW-0486">Methionine biosynthesis</keyword>
    <keyword id="KW-0511">Multifunctional enzyme</keyword>
    <keyword id="KW-0521">NADP</keyword>
    <keyword id="KW-0554">One-carbon metabolism</keyword>
    <keyword id="KW-0560">Oxidoreductase</keyword>
    <keyword id="KW-0658">Purine biosynthesis</keyword>
    <keyword id="KW-1185">Reference proteome</keyword>
    <feature type="chain" id="PRO_1000196763" description="Bifunctional protein FolD">
        <location>
            <begin position="1"/>
            <end position="284"/>
        </location>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <begin position="166"/>
            <end position="168"/>
        </location>
        <ligand>
            <name>NADP(+)</name>
            <dbReference type="ChEBI" id="CHEBI:58349"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <position position="191"/>
        </location>
        <ligand>
            <name>NADP(+)</name>
            <dbReference type="ChEBI" id="CHEBI:58349"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000255" key="1">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01576"/>
        </source>
    </evidence>
    <sequence length="284" mass="29729" checksum="FAAF00B55CEEBE6E" modified="2008-01-15" version="1">MTAQLIDGNALSRQLRAEVAQRATALKARGTTPGLAVVLVGDNPASQVYVRNKVKACEDAGFHSVLEKYDASMTEAELLARVEALNNDPSIHGILVQLPLPAHIDDHKVIETISPLKDVDGFHVASAGALMVGEVGFKACTPYGCMKMLESIGMKDLRGKHAVVIGRSNIVGKPMAMMLLAANATVTICHSGTADLAAMTRQADIVVAAVGKRNVLTADMCKPGAVVIDVGMNRNDEGKLCGDVDFDGVKEVAGFITPVPGGVGPMTITMLLVNTMEAAERAAG</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="86" xmlns="http://uniprot.org/uniprot">
    <accession>A9BX05</accession>
    <name>A9BX05_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Transcriptional regulator, IclR family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ordered locus">Daci_4359</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="6" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX36990.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012206162.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_4359"/>
    <dbReference type="PRIDE" id="A9BX05"/>
    <dbReference type="EnsemblBacteria" id="ABX36990">
        <property type="protein sequence ID" value="ABX36990"/>
        <property type="gene ID" value="Daci_4359"/>
    </dbReference>
    <dbReference type="GeneID" id="60688630"/>
    <dbReference type="KEGG" id="dac:Daci_4359"/>
    <dbReference type="eggNOG" id="COG1414">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_062618_0_1_4"/>
    <dbReference type="OMA" id="PRMLRPI"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046278">
        <property type="term" value="P:3,4-dihydroxybenzoate metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0045893">
        <property type="term" value="P:positive regulation of transcription, DNA-templated"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.450.40">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029016">
        <property type="entry name" value="GAF-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012794">
        <property type="entry name" value="PcaR_PcaU"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014757">
        <property type="entry name" value="Tscrpt_reg_IclR_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005471">
        <property type="entry name" value="Tscrpt_reg_IclR_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036390">
        <property type="entry name" value="WH_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF09339">
        <property type="entry name" value="HTH_IclR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01614">
        <property type="entry name" value="IclR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00346">
        <property type="entry name" value="HTH_ICLR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46785">
        <property type="entry name" value="SSF46785"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR02431">
        <property type="entry name" value="pcaR_pcaU"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51077">
        <property type="entry name" value="HTH_ICLR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51078">
        <property type="entry name" value="ICLR_ED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0804">Transcription</keyword>
    <keyword evidence="1" id="KW-0805">Transcription regulation</keyword>
    <feature type="domain" description="HTH iclR-type" evidence="3">
        <location>
            <begin position="13"/>
            <end position="73"/>
        </location>
    </feature>
    <feature type="domain" description="IclR-ED" evidence="4">
        <location>
            <begin position="74"/>
            <end position="260"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023015"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023163"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="PROSITE" id="PS51077"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="PROSITE" id="PS51078"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="ABX36990.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="260" mass="28564" checksum="85EBA3C6CD6DB1E6" modified="2008-01-15" version="1">MNQPFPIDPDDFIAGLAKGLAVLESFDTERQRLNATMAAERSGITRTAARRHLLTLTHLGYLETDGSHFWLAPKVLRLSGSYLASARLPRIVQPVLYRLAAQTQLSFSCVVRDGHEVVIVARSALHERGQRLMAHGLHLGSRLPAHATSTGRVLLAALPAAELRQWLASHDLRRLTAHTVTDSAALEGVLDEVRRQDFCLALEEHELAVQALAVPLRNMEGRTVAALNIVTSPQRMAPADMAAELLPLLQEAARELRPLL</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="60" xmlns="http://uniprot.org/uniprot">
    <accession>A9BX41</accession>
    <name>A9BX41_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">BLUF domain protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_4395</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX37026.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012206198.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_4395"/>
    <dbReference type="PRIDE" id="A9BX41"/>
    <dbReference type="EnsemblBacteria" id="ABX37026">
        <property type="protein sequence ID" value="ABX37026"/>
        <property type="gene ID" value="Daci_4395"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_4395"/>
    <dbReference type="eggNOG" id="COG2200">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_097099_3_1_4"/>
    <dbReference type="OMA" id="ITERQFP"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009882">
        <property type="term" value="F:blue light photoreceptor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0071949">
        <property type="term" value="F:FAD binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036046">
        <property type="entry name" value="Acylphosphatase-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007024">
        <property type="entry name" value="BLUF_domain"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04940">
        <property type="entry name" value="BLUF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM01034">
        <property type="entry name" value="BLUF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54975">
        <property type="entry name" value="SSF54975"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50925">
        <property type="entry name" value="BLUF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="BLUF" evidence="1">
        <location>
            <begin position="6"/>
            <end position="98"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS50925"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX37026.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="133" mass="14944" checksum="047D4B4FCD0AACE4" modified="2008-01-15" version="1">MQENSLECFLYHSQLAPGADTTCIAAIIKAARTFNWSAGITGMLVFDGERFFQYVEGPPEQLALLVESISRDERHINFTPLFPQARIDQRRFAKWSMAYVIVEDTEPLGTISELQGPGALEKLQELLPLLDAQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2020-12-02" version="64" xmlns="http://uniprot.org/uniprot">
    <accession>A9BX43</accession>
    <name>A9BX43_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="8">Putative manganese efflux pump MntP</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="8" type="primary">mntP</name>
        <name evidence="9" type="ordered locus">Daci_4397</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="9 10" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="10" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="8">Probably functions as a manganese efflux pump.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="8">Cell inner membrane</location>
            <topology evidence="8">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="8">Belongs to the MntP (TC 9.B.29) family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX37028.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_4397"/>
    <dbReference type="EnsemblBacteria" id="ABX37028">
        <property type="protein sequence ID" value="ABX37028"/>
        <property type="gene ID" value="Daci_4397"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_4397"/>
    <dbReference type="eggNOG" id="COG1971">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_096410_0_0_4"/>
    <dbReference type="OMA" id="WHFGLFQ"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005384">
        <property type="term" value="F:manganese ion transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01521">
        <property type="entry name" value="MntP_pump"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003810">
        <property type="entry name" value="Mntp/YtaF"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR022929">
        <property type="entry name" value="Put_MntP"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR35529">
        <property type="entry name" value="PTHR35529"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02659">
        <property type="entry name" value="Mntp"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="8" id="KW-0997">Cell inner membrane</keyword>
    <keyword evidence="2 8" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="5 8" id="KW-0406">Ion transport</keyword>
    <keyword evidence="7 8" id="KW-0464">Manganese</keyword>
    <keyword evidence="6 8" id="KW-0472">Membrane</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 8" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="4 8" id="KW-1133">Transmembrane helix</keyword>
    <keyword evidence="1 8" id="KW-0813">Transport</keyword>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="49"/>
            <end position="72"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="84"/>
            <end position="102"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="114"/>
            <end position="135"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="147"/>
            <end position="172"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="178"/>
            <end position="201"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="208"/>
            <end position="226"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022448"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023065"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023211"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01521"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="ABX37028.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="232" mass="24369" checksum="7A5607A1A6AAAA35" modified="2008-01-15" version="1">MLWCRHPFFGWRDHRHFTATQVTRSGGGEVPLCACPAVKNPSQMNAASILLLAFAMSTDAFAAAVGKGSALLKPRWSEALRTGAIFGIIEALTPLAGWALGYAASDYVKAWDHWIAFVLLLVLGGRMLLGALKAADGEEEAKPARHGFWLLVATGFATSIDAMAVGVGLAFLDVSITTVALAIGFATFAMVTLGVMVGRLLGSIAGRWAEAVGGVLLIGIGSVILYEHLSAI</sequence>
</entry>
<entry dataset="Swiss-Prot" created="2009-04-14" modified="2022-08-03" version="79" xmlns="http://uniprot.org/uniprot">
    <accession>A9BXL3</accession>
    <name>CH60_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Chaperonin GroEL</fullName>
            <ecNumber evidence="1">5.6.1.7</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="1">60 kDa chaperonin</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="1">Chaperonin-60</fullName>
            <shortName evidence="1">Cpn60</shortName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="1" type="primary">groEL</name>
        <name evidence="1" type="synonym">groL</name>
        <name type="ordered locus">Daci_5661</name>
    </gene>
    <organism>
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference key="1">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain>DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="1">Together with its co-chaperonin GroES, plays an essential role in assisting protein folding. The GroEL-GroES system forms a nano-cage that allows encapsulation of the non-native substrate proteins and provides a physical environment optimized to promote and accelerate protein folding.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>ATP + H2O + a folded polypeptide = ADP + phosphate + an unfolded polypeptide.</text>
            <dbReference type="EC" id="5.6.1.7"/>
        </reaction>
    </comment>
    <comment type="subunit">
        <text evidence="1">Forms a cylinder of 14 subunits composed of two heptameric rings stacked back-to-back. Interacts with the co-chaperonin GroES.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="1">Belongs to the chaperonin (HSP60) family.</text>
    </comment>
    <dbReference type="EC" id="5.6.1.7" evidence="1"/>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX38289.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012207458.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A9BXL3"/>
    <dbReference type="SMR" id="A9BXL3"/>
    <dbReference type="STRING" id="398578.Daci_5661"/>
    <dbReference type="PRIDE" id="A9BXL3"/>
    <dbReference type="EnsemblBacteria" id="ABX38289">
        <property type="protein sequence ID" value="ABX38289"/>
        <property type="gene ID" value="Daci_5661"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_5661"/>
    <dbReference type="eggNOG" id="COG0459">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_016503_3_0_4"/>
    <dbReference type="OMA" id="TDTDKME"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0140662">
        <property type="term" value="F:ATP-dependent protein folding chaperone"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016853">
        <property type="term" value="F:isomerase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051082">
        <property type="term" value="F:unfolded protein binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0042026">
        <property type="term" value="P:protein refolding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd03344">
        <property type="entry name" value="GroEL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.560.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.260.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.50.7.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00600">
        <property type="entry name" value="CH60"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018370">
        <property type="entry name" value="Chaperonin_Cpn60_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001844">
        <property type="entry name" value="Cpn60/GroEL"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002423">
        <property type="entry name" value="Cpn60/GroEL/TCP-1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027409">
        <property type="entry name" value="GroEL-like_apical_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027413">
        <property type="entry name" value="GROEL-like_equatorial_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027410">
        <property type="entry name" value="TCP-1-like_intermed_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00118">
        <property type="entry name" value="Cpn60_TCP1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00298">
        <property type="entry name" value="CHAPERONIN60"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48592">
        <property type="entry name" value="SSF48592"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52029">
        <property type="entry name" value="SSF52029"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54849">
        <property type="entry name" value="SSF54849"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR02348">
        <property type="entry name" value="GroEL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00296">
        <property type="entry name" value="CHAPERONINS_CPN60"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword id="KW-0067">ATP-binding</keyword>
    <keyword id="KW-0143">Chaperone</keyword>
    <keyword id="KW-0963">Cytoplasm</keyword>
    <keyword id="KW-0413">Isomerase</keyword>
    <keyword id="KW-0547">Nucleotide-binding</keyword>
    <keyword id="KW-1185">Reference proteome</keyword>
    <feature type="chain" id="PRO_1000130000" description="Chaperonin GroEL">
        <location>
            <begin position="1"/>
            <end position="547"/>
        </location>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <begin position="30"/>
            <end position="33"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <position position="51"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <begin position="87"/>
            <end position="91"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <position position="415"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <begin position="479"/>
            <end position="481"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <position position="495"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000255" key="1">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00600"/>
        </source>
    </evidence>
    <sequence length="547" mass="57159" checksum="0FBFFDF42B711160" modified="2008-01-15" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="54" xmlns="http://uniprot.org/uniprot">
    <accession>A9BXN9</accession>
    <name>A9BXN9_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Phosphoglycerate mutase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_5687</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX38315.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012207484.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_5687"/>
    <dbReference type="PRIDE" id="A9BXN9"/>
    <dbReference type="EnsemblBacteria" id="ABX38315">
        <property type="protein sequence ID" value="ABX38315"/>
        <property type="gene ID" value="Daci_5687"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_5687"/>
    <dbReference type="eggNOG" id="COG0406">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_033323_8_3_4"/>
    <dbReference type="OMA" id="IRHTSVD"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006094">
        <property type="term" value="P:gluconeogenesis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.1240">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013078">
        <property type="entry name" value="His_Pase_superF_clade-1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029033">
        <property type="entry name" value="His_PPase_superfam"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00300">
        <property type="entry name" value="His_Phos_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00855">
        <property type="entry name" value="PGAM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53254">
        <property type="entry name" value="SSF53254"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0312">Gluconeogenesis</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022432"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX38315.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="200" mass="21583" checksum="1A7D86F875DB4219" modified="2008-01-15" version="1">MNSICANPAPRLWLVRHARPLVAPGICYGRLDMQADAQSTADAAQALHLALPADCLLAHSPLRRCRQLAQALQALRPGLASAMDSRLLEMDFGEWEGQPWDALDRSAIDAWAADLAGHAPGRGESLATMLRRVDEALQQASRGSVGDGAARDTVWITHAGVARCVQWLMREGSALPQAGQWTLPAPDFGGWLVLDLPLPR</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="48" xmlns="http://uniprot.org/uniprot">
    <accession>A9BYG3</accession>
    <name>A9BYG3_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ordered locus">Daci_1866</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="5" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Periplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the UPF0065 (bug) family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX34506.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012203791.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_1866"/>
    <dbReference type="PRIDE" id="A9BYG3"/>
    <dbReference type="EnsemblBacteria" id="ABX34506">
        <property type="protein sequence ID" value="ABX34506"/>
        <property type="gene ID" value="Daci_1866"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_1866"/>
    <dbReference type="eggNOG" id="COG3181">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_045683_0_2_4"/>
    <dbReference type="OMA" id="MFTHNEN"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0042597">
        <property type="term" value="C:periplasmic space"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.190.150">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005064">
        <property type="entry name" value="BUG"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR042100">
        <property type="entry name" value="Bug_dom1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR42928">
        <property type="entry name" value="PTHR42928"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03401">
        <property type="entry name" value="TctC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF017082">
        <property type="entry name" value="YflP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="3">
        <location>
            <begin position="1"/>
            <end position="25"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5002736155" evidence="3">
        <location>
            <begin position="26"/>
            <end position="331"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004418"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00006987"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="ABX34506.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="331" mass="35125" checksum="09C083D43EDEDE16" modified="2008-01-15" version="1">MSSLHRIAATLLTATVALVPALGHAQAPAAFPSKPVNIVVPYAAGGPVDNLARALATRLNKVWSQPVVILNRTGANEIIGAEYVAKSAPDGYTLFAATEASLTMNPHLYRKLPYNPQKDFAPISRLISVPMVFFVPQSSKAGTLQEFIAQARQAGKTKPLTYGSSGAGGIVHLPLAMFAKQEGLEMVHVPYKGAAPLIPEVIAGQIDAAVLGVSVIEQHIKSGKLKALAVSSETRSIALPDVPTFKEAGVRDIQAVFNIGLLAPAGTPAPLVEKIAADVRRVLLEPEFRKTQVDAFSYVAVASSPAEYRDFLARDYQVQGERVRTSGASLD</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="58" xmlns="http://uniprot.org/uniprot">
    <accession>A9BYV0</accession>
    <name>A9BYV0_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ordered locus">Daci_2205</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="5" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Periplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the UPF0065 (bug) family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX34845.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012204128.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_2205"/>
    <dbReference type="PRIDE" id="A9BYV0"/>
    <dbReference type="EnsemblBacteria" id="ABX34845">
        <property type="protein sequence ID" value="ABX34845"/>
        <property type="gene ID" value="Daci_2205"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_2205"/>
    <dbReference type="eggNOG" id="COG3181">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_045683_0_0_4"/>
    <dbReference type="OMA" id="TDMVHIP"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0042597">
        <property type="term" value="C:periplasmic space"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.190.150">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005064">
        <property type="entry name" value="BUG"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR042100">
        <property type="entry name" value="Bug_dom1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR42928">
        <property type="entry name" value="PTHR42928"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03401">
        <property type="entry name" value="TctC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF017082">
        <property type="entry name" value="YflP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="3">
        <location>
            <begin position="1"/>
            <end position="24"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5002735211" evidence="3">
        <location>
            <begin position="25"/>
            <end position="324"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004418"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00006987"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="ABX34845.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="324" mass="34168" checksum="231CB6D0FD0ED9A3" modified="2008-01-15" version="1">MTHTSRIALAGILGALALSGAAHAQGYPTKPIKLLVPFAAGGTTDLIARIVAEPLGRALGQPVVVENKGGGGGSIGAAETARSQPDGYSLGIATVSTTATNPAINPKIPYNVLTDFTPIVNIAATPNIIAANPKFAGKNYQEFLAEVKKNPGKYSYASPGNGSITHLMMEMFKLSTGTDITHVPYRGSGPALNDAVAGQVPLIFDNLPSALGFVKEKRLVPIVVAAPQRLAALPDVPTFKEVGLAPVNRMAYYGIVGPKNLPRDIVDKVNAATRKVLQDPAIKKRIEETGSLIVADTPEHFFEEIKAELAVYKDVVQKQNLTMD</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2020-02-26" version="22" xmlns="http://uniprot.org/uniprot">
    <accession>A9BZ63</accession>
    <name>A9BZ63_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_2525</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX35163.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="ABX35163">
        <property type="protein sequence ID" value="ABX35163"/>
        <property type="gene ID" value="Daci_2525"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_2525"/>
    <dbReference type="HOGENOM" id="CLU_2057546_0_0_4"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="20"/>
            <end position="42"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="54"/>
            <end position="75"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX35163.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="119" mass="12963" checksum="42B29BDE11EBB13E" modified="2008-01-15" version="1">MLYEAILLHNSIPETSARRPLWVVFLQHIATGVLLCCSGHLSCLVRQRHWRAQVVAVVVVDGNAGMLLSFLFLQLSLHATDHGLHEGQGQRVTRVTPVGLACGNGLYQQIGFAGRGTHA</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="60" xmlns="http://uniprot.org/uniprot">
    <accession>A9BZ77</accession>
    <name>A9BZ77_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Peptidase S24 and S26 domain protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_2539</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX35177.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_2539"/>
    <dbReference type="PRIDE" id="A9BZ77"/>
    <dbReference type="EnsemblBacteria" id="ABX35177">
        <property type="protein sequence ID" value="ABX35177"/>
        <property type="gene ID" value="Daci_2539"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_2539"/>
    <dbReference type="eggNOG" id="COG1974">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_066192_41_0_4"/>
    <dbReference type="OMA" id="TEDCRII"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="CDD" id="cd06529">
        <property type="entry name" value="S24_LexA-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR039418">
        <property type="entry name" value="LexA-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036286">
        <property type="entry name" value="LexA/Signal_pep-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015927">
        <property type="entry name" value="Peptidase_S24_S26A/B/C"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00717">
        <property type="entry name" value="Peptidase_S24"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51306">
        <property type="entry name" value="SSF51306"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Peptidase_S24" evidence="1">
        <location>
            <begin position="45"/>
            <end position="139"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF00717"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX35177.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="149" mass="16429" checksum="F2FAD44EC3D95E56" modified="2008-01-15" version="1">MTPDEAAMLAQLPCGIRRYPVLTSSQAVARSEAVEGLESLGTEVSANEASVHAFFLQLAGNSMTPEFREGDRVLIDPGVKPQPGDYVAAQVGKTEALFRKYRLHGNDRLGNEVFELIPLNQDHPVMRSDEHGLSVIGTMLELRRKFPRP</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="68" xmlns="http://uniprot.org/uniprot">
    <accession>A9BZN5</accession>
    <name>A9BZN5_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="3">X-Pro dipeptidyl-peptidase domain protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Daci_3305</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="4" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX35943.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012205143.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_3305"/>
    <dbReference type="PRIDE" id="A9BZN5"/>
    <dbReference type="EnsemblBacteria" id="ABX35943">
        <property type="protein sequence ID" value="ABX35943"/>
        <property type="gene ID" value="Daci_3305"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_3305"/>
    <dbReference type="eggNOG" id="COG2936">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_015590_4_1_4"/>
    <dbReference type="OMA" id="FWWDRQV"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008239">
        <property type="term" value="F:dipeptidyl-peptidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.1820">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029058">
        <property type="entry name" value="AB_hydrolase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005674">
        <property type="entry name" value="CocE/Ser_esterase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008979">
        <property type="entry name" value="Galactose-bd-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000383">
        <property type="entry name" value="Xaa-Pro-like_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013736">
        <property type="entry name" value="Xaa-Pro_dipept_C"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02129">
        <property type="entry name" value="Peptidase_S15"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08530">
        <property type="entry name" value="PepX_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00939">
        <property type="entry name" value="PepX_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF49785">
        <property type="entry name" value="SSF49785"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53474">
        <property type="entry name" value="SSF53474"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00976">
        <property type="entry name" value="NonD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="PepX_C" evidence="2">
        <location>
            <begin position="316"/>
            <end position="571"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="590"/>
            <end position="611"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="SMART" id="SM00939"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ABX35943.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="611" mass="66198" checksum="FD4425DDE6590C61" modified="2008-01-15" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="58" xmlns="http://uniprot.org/uniprot">
    <accession>A9BZV6</accession>
    <name>A9BZV6_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Sel1 domain protein repeat-containing protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_3376</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX36014.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012205214.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_3376"/>
    <dbReference type="PRIDE" id="A9BZV6"/>
    <dbReference type="EnsemblBacteria" id="ABX36014">
        <property type="protein sequence ID" value="ABX36014"/>
        <property type="gene ID" value="Daci_3376"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_3376"/>
    <dbReference type="eggNOG" id="COG0790">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_663464_0_0_4"/>
    <dbReference type="OMA" id="SAGLAWC"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.25.40.10">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006597">
        <property type="entry name" value="Sel1-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011990">
        <property type="entry name" value="TPR-like_helical_dom_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08238">
        <property type="entry name" value="Sel1"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SMART" id="SM00671">
        <property type="entry name" value="SEL1"/>
        <property type="match status" value="3"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="269"/>
            <end position="320"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="269"/>
            <end position="318"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX36014.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="410" mass="44219" checksum="2C88C98B31034E15" modified="2008-01-15" version="1">MPSSAHETSPRRRRGLRLTARLVLPGLLVVLPGLAPAVLPHVQAAARFTPVMPIRVATASVYGSQPGTSNITSNSDTAQQRALSQLRSRAEGKGVSPATQREAQWVMGLLALHGIAMAQDGPQARTWFERAQRAGHPLASAGLAWCAMDGCGQPPDPPAARPWIAQLAKTDPARAQYLEWLLARRLAPLSTAEPVGEALTVAGTPDQELLQRAARSGSPGAQLEWGLALLAQDEPEAALRQFRAAAPRSSSAAANAQMLGDRMRPAGQLVSAQGTSAPPAAQGPQRLQRTPQLRGSPSEQDIQVRQPVTAQQQWEQAQRYHRGEGVPANYTEALRLYQQAASHGHVASRRMLELIYSRPAQGGGVDIGWMQQLARIDPMTMQPMAPISPAPYRRDPTPLFDMVPAPWHRN</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="61" xmlns="http://uniprot.org/uniprot">
    <accession>A9BZZ0</accession>
    <name>A9BZZ0_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="9">Methyl-accepting chemotaxis sensory transducer</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="9" type="ordered locus">Daci_3618</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="9 10" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="10" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX36252.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012205452.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_3618"/>
    <dbReference type="PRIDE" id="A9BZZ0"/>
    <dbReference type="EnsemblBacteria" id="ABX36252">
        <property type="protein sequence ID" value="ABX36252"/>
        <property type="gene ID" value="Daci_3618"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_3618"/>
    <dbReference type="eggNOG" id="COG0840">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="eggNOG" id="COG4564">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_036166_1_0_4"/>
    <dbReference type="OMA" id="PFHDRDM"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004888">
        <property type="term" value="F:transmembrane signaling receptor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006935">
        <property type="term" value="P:chemotaxis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0007165">
        <property type="term" value="P:signal transduction"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004090">
        <property type="entry name" value="Chemotax_Me-accpt_rcpt"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004089">
        <property type="entry name" value="MCPsignal_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR033480">
        <property type="entry name" value="sCache_2"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00015">
        <property type="entry name" value="MCPsignal"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF17200">
        <property type="entry name" value="sCache_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00260">
        <property type="entry name" value="CHEMTRNSDUCR"/>
    </dbReference>
    <dbReference type="SMART" id="SM00283">
        <property type="entry name" value="MA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50111">
        <property type="entry name" value="CHEMOTAXIS_TRANSDUC_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="5 7" id="KW-0472">Membrane</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="6" id="KW-0807">Transducer</keyword>
    <keyword evidence="3 7" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="4 7" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="21"/>
            <end position="44"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="50"/>
            <end position="71"/>
        </location>
    </feature>
    <feature type="domain" description="Methyl-accepting transducer" evidence="8">
        <location>
            <begin position="134"/>
            <end position="363"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00284"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="PROSITE" id="PS50111"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="ABX36252.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="512" mass="53883" checksum="334BA4D5AFC72FAB" modified="2008-01-15" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="53" xmlns="http://uniprot.org/uniprot">
    <accession>A9C019</accession>
    <name>A9C019_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Cobalamin synthesis protein P47K</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Daci_3649</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="4" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the SIMIBI class G3E GTPase family. CobW subfamily.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX36281.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_3649"/>
    <dbReference type="PRIDE" id="A9C019"/>
    <dbReference type="EnsemblBacteria" id="ABX36281">
        <property type="protein sequence ID" value="ABX36281"/>
        <property type="gene ID" value="Daci_3649"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_3649"/>
    <dbReference type="eggNOG" id="COG0523">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_017452_2_0_4"/>
    <dbReference type="OMA" id="WSQAGPN"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.1220.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011629">
        <property type="entry name" value="Cbl_biosynth_CobW-like_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036627">
        <property type="entry name" value="CobW-likC_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003495">
        <property type="entry name" value="CobW/HypB/UreG_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02492">
        <property type="entry name" value="cobW"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07683">
        <property type="entry name" value="CobW_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00833">
        <property type="entry name" value="CobW_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="CobW C-terminal" evidence="2">
        <location>
            <begin position="284"/>
            <end position="399"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00008073"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="SMART" id="SM00833"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ABX36281.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="423" mass="46919" checksum="CE48A5B7438B4066" modified="2008-01-15" version="1">MRPQCPPRAPCPCSRDSMMHTVAPVQPPHARLPVTVLSGFLGAGKTTLLNHILHNREGRRVAVIVNDMSEVNIDAALVRDGGAGLSRTDEKLVEMSNGCICCTLREDLLLEVARLAGEGRFDQLVIESTGISEPLPVAETFTFAGEDGRSLGDVARLDTMVTVVDAFNFLHDYGSRDSLRSRGESLGEEDRRTVVDLLIEQVEFCDVIVLNKIDLVTDEDCSRLMAILRGLNPRARLEAASFGQLPLDRVLDTGLFDFEEASRAPGWLQQLRGTHQPETEAYGVASFVYRARRPFHPRRFFGLVQSEWPGVVRSKGFFWLASHPALAGSWSQAGAVARHGPAGHWWAAVEAERWPRDPESVERILDKWVDGVGDARQELVLIGMGMDEQALRARLDECLLTDAEMAMGPQAWTQWDNPFPGWN</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="57" xmlns="http://uniprot.org/uniprot">
    <accession>A9C024</accession>
    <name>A9C024_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Daci_3654</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="2" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX36286.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012205482.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_3654"/>
    <dbReference type="PRIDE" id="A9C024"/>
    <dbReference type="EnsemblBacteria" id="ABX36286">
        <property type="protein sequence ID" value="ABX36286"/>
        <property type="gene ID" value="Daci_3654"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_3654"/>
    <dbReference type="eggNOG" id="COG4335">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_088207_0_0_4"/>
    <dbReference type="OMA" id="SVGNWLN"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016024">
        <property type="entry name" value="ARM-type_fold"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014825">
        <property type="entry name" value="DNA_alkylation"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08713">
        <property type="entry name" value="DNA_alkylation"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48371">
        <property type="entry name" value="SSF48371"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ABX36286.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="261" mass="29153" checksum="C7AFA9000352CC7A" modified="2008-01-15" version="1">MTAPAPRRKGANRTADITPELLQALSLGEIETATLTESLAVDQARLLQAVFPDAWPQLEDTAQALGQLGILKRMESIGGLLWQALGQAGWQRCLTHRSDTVRGWACFMAGAQPGLTLSQRLELLQPLADDSHFGVREWSWMGVRPHLASDLPQAVAELSRWTRRTSDRLRRFASEALRPRGVWCSHIAALKQQPEIALPLLQRLRADASPYVQDSVANWLNDAAKSRPDWVRALCAQWLEESPVPATRRICERAQRSLKES</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="74" xmlns="http://uniprot.org/uniprot">
    <accession>A9C0B7</accession>
    <name>A9C0B7_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Diguanylate cyclase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ordered locus">Daci_4052</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="5" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX36683.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012205877.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_4052"/>
    <dbReference type="PRIDE" id="A9C0B7"/>
    <dbReference type="EnsemblBacteria" id="ABX36683">
        <property type="protein sequence ID" value="ABX36683"/>
        <property type="gene ID" value="Daci_4052"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_4052"/>
    <dbReference type="eggNOG" id="COG3706">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_032718_0_0_4"/>
    <dbReference type="OMA" id="ENRGHYL"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0007165">
        <property type="term" value="P:signal transduction"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd01949">
        <property type="entry name" value="GGDEF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.70.270">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000160">
        <property type="entry name" value="GGDEF_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003660">
        <property type="entry name" value="HAMP_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029787">
        <property type="entry name" value="Nucleotide_cyclase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043128">
        <property type="entry name" value="Rev_trsase/Diguanyl_cyclase"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00990">
        <property type="entry name" value="GGDEF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00267">
        <property type="entry name" value="GGDEF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55073">
        <property type="entry name" value="SSF55073"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00254">
        <property type="entry name" value="GGDEF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50887">
        <property type="entry name" value="GGDEF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50885">
        <property type="entry name" value="HAMP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="149"/>
            <end position="167"/>
        </location>
    </feature>
    <feature type="domain" description="HAMP" evidence="2">
        <location>
            <begin position="169"/>
            <end position="226"/>
        </location>
    </feature>
    <feature type="domain" description="GGDEF" evidence="3">
        <location>
            <begin position="280"/>
            <end position="415"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS50885"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="PROSITE" id="PS50887"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="ABX36683.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="416" mass="46378" checksum="D608232CC86D7E04" modified="2008-01-15" version="1">MPRFRSIASLLILRIMLLAVACMLVFGGAHAWWEYRKGQQEFRRSMETLVANSMISLSAALWDIEPALVREQVQWLGKLPLVGHVQLRVTSTGEMYEAGEPRDGRAPAVSMLIPAPRHSQSSLPLGELQVWENRGHYLEVLRDSTLRVLLGYALFTALVCLMVAWVMRRELRQPLQQIAGFAANLKPNELSRPLVLERARRGQRDEIDMVVQGFGQLQHDLRGHIEHLDLLVAQRTAQLEELVEEVKRMSLTDALTGCLNRRAMDERLASEVAQGQRLGAALSVMFVDVDRFKQVNDRHGHAAGDAVLREVALRCRHALEREPSAQWMARYGGEEFLIVMPGVAAAQAWALAGQLREAIRSTPIQVHGLELAATASFGVAQLQGAESAQELLQRADAMLYEAKHAGRDCVRVAGLT</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="67" xmlns="http://uniprot.org/uniprot">
    <accession>A9C0C1</accession>
    <name>A9C0C1_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="8">Major facilitator superfamily MFS_1</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="8" type="ordered locus">Daci_4056</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="9" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX36687.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012205881.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_4056"/>
    <dbReference type="PRIDE" id="A9C0C1"/>
    <dbReference type="EnsemblBacteria" id="ABX36687">
        <property type="protein sequence ID" value="ABX36687"/>
        <property type="gene ID" value="Daci_4056"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_4056"/>
    <dbReference type="eggNOG" id="COG0477">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_001265_39_5_4"/>
    <dbReference type="OMA" id="DFFVYGI"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0022857">
        <property type="term" value="F:transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.1250.20">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011701">
        <property type="entry name" value="MFS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020846">
        <property type="entry name" value="MFS_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036259">
        <property type="entry name" value="MFS_trans_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005829">
        <property type="entry name" value="Sugar_transporter_CS"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07690">
        <property type="entry name" value="MFS_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF103473">
        <property type="entry name" value="SSF103473"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50850">
        <property type="entry name" value="MFS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00216">
        <property type="entry name" value="SUGAR_TRANSPORT_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4 6" id="KW-0472">Membrane</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 6" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="3 6" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="50"/>
            <end position="70"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="76"/>
            <end position="97"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="109"/>
            <end position="126"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="132"/>
            <end position="152"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="173"/>
            <end position="198"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="210"/>
            <end position="227"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="262"/>
            <end position="287"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="299"/>
            <end position="320"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="332"/>
            <end position="350"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="356"/>
            <end position="376"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="388"/>
            <end position="409"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="415"/>
            <end position="437"/>
        </location>
    </feature>
    <feature type="domain" description="MFS" evidence="7">
        <location>
            <begin position="35"/>
            <end position="445"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="5">
        <location>
            <begin position="1"/>
            <end position="27"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="5">
        <location>
            <begin position="1"/>
            <end position="16"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="PROSITE" id="PS50850"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="ABX36687.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="445" mass="47432" checksum="C0C400FA20928FBE" modified="2008-01-15" version="1">MSGLDTTASFPGGSYESKESLSRADTHEDVTPNEIAVGVIIGRSSEYFDFFVFGIACVLVFPALLFPYLSKLDGTLMSFAIFSLAFVARPLGTALSMAVQRRWGRATKLTLALFLLGVCTVGMAFLPSYQQAGVNAIIVLALLRIGQGIALGGSWDGLPSLLAMSAPKNRRGWYSMMGQLGAPLGFVLAAGLFAFIYAHVGADEFLSWGWRYPFCVAFAINVVALFARLRLVVGQSYTELLQQRELEPMGVLPLMRDEGRNVVIGAFAALASFALFHLVTIFPLSWISLYSDQSVTHVLGVQIVGAFCAAAAIMVSGWLADRVGRRNTLGTMACLIGIFSFLAPWLLGSGTVGNNVFIIVGFILLGLSYGQAAGTVTSNFPSRYRYTGAALSSDMAWLVGAAFAPLVALGVSSRFGLVALGIYLLSGALCTLAALGINRAIETRD</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="63" xmlns="http://uniprot.org/uniprot">
    <accession>A9C0Q6</accession>
    <name>A9C0Q6_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Glucose sorbosone dehydrogenase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Daci_4500</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="4" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX37129.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012206299.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_4500"/>
    <dbReference type="PRIDE" id="A9C0Q6"/>
    <dbReference type="EnsemblBacteria" id="ABX37129">
        <property type="protein sequence ID" value="ABX37129"/>
        <property type="gene ID" value="Daci_4500"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_4500"/>
    <dbReference type="eggNOG" id="COG2133">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_012253_1_0_4"/>
    <dbReference type="OMA" id="RLWRIPL"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.120.10.30">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011042">
        <property type="entry name" value="6-blade_b-propeller_TolB-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012938">
        <property type="entry name" value="Glc/Sorbosone_DH"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011041">
        <property type="entry name" value="Quinoprot_gluc/sorb_DH"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07995">
        <property type="entry name" value="GSDH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50952">
        <property type="entry name" value="SSF50952"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="1">
        <location>
            <begin position="1"/>
            <end position="21"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5002733238" evidence="1">
        <location>
            <begin position="22"/>
            <end position="408"/>
        </location>
    </feature>
    <feature type="domain" description="GSDH" evidence="2">
        <location>
            <begin position="44"/>
            <end position="404"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF07995"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ABX37129.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="408" mass="43768" checksum="056AA7FAB33B3434" modified="2008-01-15" version="1">MRLPKSGLIPWLLMAATPVLAQINAGTLPATASPPFKVSKVAQFDLPWRIAFLPDGRMLVTEKVGKLLLAAQDGQKLEVTGVPPVLHENQNGLLGVYLAPSYTSDGAIYLTYSEPGEIRGTSSLALASATLRIGAGTAALEDLKVIWRDPVKGKGGQVGAAVAFSPDQKFLFLTAGDRQRFTPAQDPNQPAGKILRLTLDGKPAPGNPMQGQTGATSVPVIDPPKDTEAAKTAPVLRTFVFDGPNLTPSETWSTGHRTPYGLAFAPDGRLWELEHGPRGGDELNLIEPGKNYGWPLVSYAVNYNGVPIASPDTRGDLTKPVIYWTPVFAPGSLMFYSGEMFPQWKGSAFASGLLTRALHRIEVNGASATPAEHWTVGFRVRDVAQAPDGALWLIEDDRKGGLYRLTPK</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="46" xmlns="http://uniprot.org/uniprot">
    <accession>A9C0Y1</accession>
    <name>A9C0Y1_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Daci_5816</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="2" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX38444.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012207613.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_5816"/>
    <dbReference type="PRIDE" id="A9C0Y1"/>
    <dbReference type="EnsemblBacteria" id="ABX38444">
        <property type="protein sequence ID" value="ABX38444"/>
        <property type="gene ID" value="Daci_5816"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_5816"/>
    <dbReference type="eggNOG" id="ENOG5032YUX">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_179376_1_0_4"/>
    <dbReference type="OMA" id="MDKADLF"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019239">
        <property type="entry name" value="VapB_antitoxin"/>
    </dbReference>
    <dbReference type="Pfam" id="PF09957">
        <property type="entry name" value="VapB_antitoxin"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ABX38444.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="67" mass="7486" checksum="FBB973CC8515B56F" modified="2008-01-15" version="1">MRTTVTIDDALYEEALELAEPEMDKADLFREAVKTFVRVQAAKRLAALGGSAPDMREIPRRPQGIEP</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="60" xmlns="http://uniprot.org/uniprot">
    <accession>A9C135</accession>
    <name>A9C135_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Alpha,alpha-trehalose-phosphate synthase (UDP-forming)</fullName>
            <ecNumber evidence="3">2.4.1.15</ecNumber>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Daci_5870</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="4" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the glycosyltransferase 20 family.</text>
    </comment>
    <dbReference type="EC" id="2.4.1.15" evidence="3"/>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX38498.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012207667.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_5870"/>
    <dbReference type="CAZy" id="GT20">
        <property type="family name" value="Glycosyltransferase Family 20"/>
    </dbReference>
    <dbReference type="PRIDE" id="A9C135"/>
    <dbReference type="EnsemblBacteria" id="ABX38498">
        <property type="protein sequence ID" value="ABX38498"/>
        <property type="gene ID" value="Daci_5870"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_5870"/>
    <dbReference type="eggNOG" id="COG0380">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_002351_7_1_4"/>
    <dbReference type="OMA" id="HFSHTPW"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003825">
        <property type="term" value="F:alpha,alpha-trehalose-phosphate synthase (UDP-forming) activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005992">
        <property type="term" value="P:trehalose biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd03788">
        <property type="entry name" value="GT20_TPS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001830">
        <property type="entry name" value="Glyco_trans_20"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10788">
        <property type="entry name" value="PTHR10788"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00982">
        <property type="entry name" value="Glyco_transf_20"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-0328">Glycosyltransferase</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0808">Transferase</keyword>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="460"/>
            <end position="492"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00008799"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ABX38498.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="514" mass="57361" checksum="22EB1D77E9792CB2" modified="2008-01-15" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2021-06-02" version="49" xmlns="http://uniprot.org/uniprot">
    <accession>A9C1A9</accession>
    <name>A9C1A9_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="8">Tripartite ATP-independent periplasmic transporter DctQ component</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="8" type="ordered locus">Daci_5944</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="9" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX38572.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012207741.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_5944"/>
    <dbReference type="EnsemblBacteria" id="ABX38572">
        <property type="protein sequence ID" value="ABX38572"/>
        <property type="gene ID" value="Daci_5944"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_5944"/>
    <dbReference type="eggNOG" id="COG3090">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_086356_9_4_4"/>
    <dbReference type="OMA" id="LAMACIV"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007387">
        <property type="entry name" value="TRAP_DctQ"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR35011">
        <property type="entry name" value="PTHR35011"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04290">
        <property type="entry name" value="DctQ"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="6 7" id="KW-0472">Membrane</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4 7" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="5 7" id="KW-1133">Transmembrane helix</keyword>
    <keyword evidence="2" id="KW-0813">Transport</keyword>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="12"/>
            <end position="32"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="52"/>
            <end position="71"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="91"/>
            <end position="112"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="124"/>
            <end position="147"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022448"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="ABX38572.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="171" mass="18807" checksum="5802DF7F4988FAFC" modified="2008-01-15" version="1">MLNRIERALVACNRWLLIVLLLAMACIVFANVVLRYTTGDSIVWAEEVARHMMIWVTFLGAGLVLRFGGHVAIDNLHRSVGTRKAQWLRRLVVLGVGLFCAVMAVASSQYVWATRFQTTAATDIPISFVYAAMPVGFVLMLVHLLFIARGYVADGSFAKSDEMDADAAASI</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="81" xmlns="http://uniprot.org/uniprot">
    <accession>A9C1F4</accession>
    <name>A9C1F4_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="4">Isocitrate dehydrogenase kinase/phosphatase</fullName>
            <shortName evidence="4">IDH kinase/phosphatase</shortName>
            <shortName evidence="4">IDHK/P</shortName>
            <ecNumber evidence="4">2.7.11.5</ecNumber>
            <ecNumber evidence="4">3.1.3.-</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="4" type="primary">aceK</name>
        <name evidence="5" type="ordered locus">Daci_5989</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="6" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="4">Bifunctional enzyme which can phosphorylate or dephosphorylate isocitrate dehydrogenase (IDH) on a specific serine residue. This is a regulatory mechanism which enables bacteria to bypass the Krebs cycle via the glyoxylate shunt in response to the source of carbon. When bacteria are grown on glucose, IDH is fully active and unphosphorylated, but when grown on acetate or ethanol, the activity of IDH declines drastically concomitant with its phosphorylation.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="4">
            <text>ATP + L-seryl-[isocitrate dehydrogenase] = ADP + H(+) + O-phospho-L-seryl-[isocitrate dehydrogenase]</text>
            <dbReference type="Rhea" id="RHEA:43540"/>
            <dbReference type="Rhea" id="RHEA-COMP:10605"/>
            <dbReference type="Rhea" id="RHEA-COMP:10606"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:29999"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:83421"/>
            <dbReference type="ChEBI" id="CHEBI:456216"/>
            <dbReference type="EC" id="2.7.11.5"/>
        </reaction>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="4">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="4">Belongs to the AceK family.</text>
    </comment>
    <dbReference type="EC" id="2.7.11.5" evidence="4"/>
    <dbReference type="EC" id="3.1.3.-" evidence="4"/>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX38617.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012207786.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_5989"/>
    <dbReference type="PRIDE" id="A9C1F4"/>
    <dbReference type="EnsemblBacteria" id="ABX38617">
        <property type="protein sequence ID" value="ABX38617"/>
        <property type="gene ID" value="Daci_5989"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_5989"/>
    <dbReference type="eggNOG" id="COG4579">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_033804_1_1_4"/>
    <dbReference type="OMA" id="EPWYSVG"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008772">
        <property type="term" value="F:[isocitrate dehydrogenase (NADP+)] kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004721">
        <property type="term" value="F:phosphoprotein phosphatase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004674">
        <property type="term" value="F:protein serine/threonine kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006006">
        <property type="term" value="P:glucose metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006097">
        <property type="term" value="P:glyoxylate cycle"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016310">
        <property type="term" value="P:phosphorylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006099">
        <property type="term" value="P:tricarboxylic acid cycle"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00747">
        <property type="entry name" value="AceK"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010452">
        <property type="entry name" value="Isocitrate_DH_AceK"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR39559">
        <property type="entry name" value="PTHR39559"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF06315">
        <property type="entry name" value="AceK"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF000719">
        <property type="entry name" value="AceK"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="2 4" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="1 4" id="KW-0329">Glyoxylate bypass</keyword>
    <keyword evidence="4" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="4 5" id="KW-0418">Kinase</keyword>
    <keyword evidence="4" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="3 4" id="KW-0904">Protein phosphatase</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4" id="KW-0723">Serine/threonine-protein kinase</keyword>
    <keyword evidence="4 5" id="KW-0808">Transferase</keyword>
    <keyword evidence="4" id="KW-0816">Tricarboxylic acid cycle</keyword>
    <feature type="active site" evidence="4">
        <location>
            <position position="381"/>
        </location>
    </feature>
    <feature type="binding site" evidence="4">
        <location>
            <begin position="325"/>
            <end position="331"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="4">
        <location>
            <position position="346"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022435"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022490"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022912"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00747"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="ABX38617.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="595" mass="69533" checksum="BE79311943D880E2" modified="2008-01-15" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="77" xmlns="http://uniprot.org/uniprot">
    <accession>A9C264</accession>
    <name>A9C264_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Transcriptional regulator, GntR family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ordered locus">Daci_3062</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="6" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX35700.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012204906.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_3062"/>
    <dbReference type="PRIDE" id="A9C264"/>
    <dbReference type="EnsemblBacteria" id="ABX35700">
        <property type="protein sequence ID" value="ABX35700"/>
        <property type="gene ID" value="Daci_3062"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_3062"/>
    <dbReference type="eggNOG" id="COG1802">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_017584_5_1_4"/>
    <dbReference type="OMA" id="QIHDRIN"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003700">
        <property type="term" value="F:DNA-binding transcription factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd07377">
        <property type="entry name" value="WHTH_GntR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.120.530">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011711">
        <property type="entry name" value="GntR_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008920">
        <property type="entry name" value="TF_FadR/GntR_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000524">
        <property type="entry name" value="Tscrpt_reg_HTH_GntR"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036390">
        <property type="entry name" value="WH_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07729">
        <property type="entry name" value="FCD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00392">
        <property type="entry name" value="GntR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00035">
        <property type="entry name" value="HTHGNTR"/>
    </dbReference>
    <dbReference type="SMART" id="SM00895">
        <property type="entry name" value="FCD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00345">
        <property type="entry name" value="HTH_GNTR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46785">
        <property type="entry name" value="SSF46785"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48008">
        <property type="entry name" value="SSF48008"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50949">
        <property type="entry name" value="HTH_GNTR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0804">Transcription</keyword>
    <keyword evidence="1" id="KW-0805">Transcription regulation</keyword>
    <feature type="domain" description="HTH gntR-type" evidence="4">
        <location>
            <begin position="10"/>
            <end position="77"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023015"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023163"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="PROSITE" id="PS50949"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="ABX35700.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="228" mass="25251" checksum="DA4F482C20B8DB85" modified="2008-01-15" version="1">MAEIIEISRAALHEQVADRLRSMLIEGRIAPGAKLNERELCEQLGVSRTPLREAIKLLAAEGLADLLPNRGAIAVKLSEADVMHAFEVLAGIEGLSGELAAQRITDQEFAEIRALHYEMMASVARADVSAYYRLNAAIHAALNSAAKNPVLTETFQRINNRVQSLRFRTNLDTAKWKQAVKEHEAMIEALGARDATALRELLVTHLHHKRDAVLAMLRAEALQPRKAR</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="64" xmlns="http://uniprot.org/uniprot">
    <accession>A9C279</accession>
    <name>A9C279_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="3">GCN5-related N-acetyltransferase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Daci_3385</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="4" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the 4-hydroxybenzoyl-CoA thioesterase family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX36023.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012205223.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_3385"/>
    <dbReference type="PRIDE" id="A9C279"/>
    <dbReference type="EnsemblBacteria" id="ABX36023">
        <property type="protein sequence ID" value="ABX36023"/>
        <property type="gene ID" value="Daci_3385"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_3385"/>
    <dbReference type="eggNOG" id="COG0824">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="eggNOG" id="COG2153">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_961799_0_0_4"/>
    <dbReference type="OMA" id="KIVFNAH"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004343">
        <property type="term" value="F:glucosamine 6-phosphate N-acetyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016787">
        <property type="term" value="F:hydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006048">
        <property type="term" value="P:UDP-N-acetylglucosamine biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016181">
        <property type="entry name" value="Acyl_CoA_acyltransferase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000182">
        <property type="entry name" value="GNAT_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR039143">
        <property type="entry name" value="GNPNAT1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029069">
        <property type="entry name" value="HotDog_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006683">
        <property type="entry name" value="Thioestr_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006684">
        <property type="entry name" value="YbgC/YbaW"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR13355">
        <property type="entry name" value="PTHR13355"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03061">
        <property type="entry name" value="4HBT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13673">
        <property type="entry name" value="Acetyltransf_10"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54637">
        <property type="entry name" value="SSF54637"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55729">
        <property type="entry name" value="SSF55729"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00051">
        <property type="entry name" value="TIGR00051"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51186">
        <property type="entry name" value="GNAT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="N-acetyltransferase" evidence="2">
        <location>
            <begin position="142"/>
            <end position="286"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00005953"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS51186"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ABX36023.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="287" mass="32049" checksum="A561D743B6159AD2" modified="2008-01-15" version="1">MQRQDFRTLQRIEVRWSEVDAQKIVFNAHYLMYADVAVTDYWRQLGLPYESSFAALGGELFVKKATTIYHASATLGDVLHVGIRCARQGNTSLLFEAGIFRGMELLNTVELVYVFADATTRQPLPVPQQLRDVLTAYEAGQSVVRVASGSWNDLGRDAERLRLAVFVHEQGVPREIEIDEFDPVARHAVVYNGLGQPIATGRLVSDSPGAGRIGRMAVDRSVRGGRWGRIVLDSLVEASRQRGDREVVLHAQRHAESFYLRAGFTPEGEPYEEAGIPHITMRKVLTA</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="66" xmlns="http://uniprot.org/uniprot">
    <accession>A9C2I9</accession>
    <name>A9C2I9_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="6">Patatin</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ordered locus">Daci_3706</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="7" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="2">Lacks conserved residue(s) required for the propagation of feature annotation.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX36338.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012205534.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_3706"/>
    <dbReference type="PRIDE" id="A9C2I9"/>
    <dbReference type="EnsemblBacteria" id="ABX36338">
        <property type="protein sequence ID" value="ABX36338"/>
        <property type="gene ID" value="Daci_3706"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_3706"/>
    <dbReference type="eggNOG" id="COG1752">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_047251_1_0_4"/>
    <dbReference type="OMA" id="LQTFAIM"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016787">
        <property type="term" value="F:hydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016042">
        <property type="term" value="P:lipid catabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016035">
        <property type="entry name" value="Acyl_Trfase/lysoPLipase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002641">
        <property type="entry name" value="PNPLA_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01734">
        <property type="entry name" value="Patatin"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52151">
        <property type="entry name" value="SSF52151"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51635">
        <property type="entry name" value="PNPLA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="2" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="2" id="KW-0442">Lipid degradation</keyword>
    <keyword evidence="1 2" id="KW-0443">Lipid metabolism</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="4">
        <location>
            <begin position="1"/>
            <end position="30"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5002736235" evidence="4">
        <location>
            <begin position="31"/>
            <end position="348"/>
        </location>
    </feature>
    <feature type="domain" description="PNPLA" evidence="5">
        <location>
            <begin position="51"/>
            <end position="209"/>
        </location>
    </feature>
    <feature type="coiled-coil region" evidence="3">
        <location>
            <begin position="290"/>
            <end position="317"/>
        </location>
    </feature>
    <feature type="short sequence motif" description="GXSXG" evidence="2">
        <location>
            <begin position="82"/>
            <end position="86"/>
        </location>
    </feature>
    <feature type="short sequence motif" description="DGA/G" evidence="2">
        <location>
            <begin position="196"/>
            <end position="198"/>
        </location>
    </feature>
    <feature type="active site" description="Nucleophile" evidence="2">
        <location>
            <position position="84"/>
        </location>
    </feature>
    <feature type="active site" description="Proton acceptor" evidence="2">
        <location>
            <position position="196"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023098"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU01161"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="PROSITE" id="PS51635"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="ABX36338.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="348" mass="36031" checksum="14C1BA4ED7480553" modified="2008-01-15" version="1">MRLKALLRPLVYLSLAGLAACGSNPPSPSAATPESTPTAPSTPVAPIRIGLALGGGAVKGFAHIGVIKMLEANGLAPAVVSGTSAGSVVGALYASGMNAFELQEKAVALDETRIRDLQLSSGGLLVGQKLEDYVNEQVGRKPLEQLAKPFVAVSTRLEDGERTVFARGNTGQAVRASSSIPGVFQPVAIGKFHFVDGGITSPVPVDAARQLGADLVIAVDISNKARGKAPENMLGALGQSIAIMGQKLGQAELARADITIRPKVLDIGPADFTQRASAILEGEKAAVAAMPQIRERIAQLQAERAKAAKLAQQKAAEAQHQACLDQRSRMQKLAEMAGMDGACANPNP</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="48" xmlns="http://uniprot.org/uniprot">
    <accession>A9C305</accession>
    <name>A9C305_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Daci_4178</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="2" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX36809.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012205987.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_4178"/>
    <dbReference type="PRIDE" id="A9C305"/>
    <dbReference type="EnsemblBacteria" id="ABX36809">
        <property type="protein sequence ID" value="ABX36809"/>
        <property type="gene ID" value="Daci_4178"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_4178"/>
    <dbReference type="eggNOG" id="ENOG502ZBPP">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_125516_0_0_4"/>
    <dbReference type="OMA" id="QFKRLPN"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR022262">
        <property type="entry name" value="Lipoprot_put"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR03751">
        <property type="entry name" value="conj_TIGR03751"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ABX36809.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="149" mass="16540" checksum="A47A8A8A419EE9D8" modified="2008-01-15" version="1">MPSNLNSWAQGLALALAVALLGGCATSKEKLLTHGDSTMMNIWQQNAGDGGGGAGQVARRQLLDARQSLRRPLTEMDVQAAPAEQMRYTRTARNEVYRQFQRLPNPDLVMYVYPHLAGTDPVPIPGYTTVFPLYQRVQYAMPGERVEDY</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="81" xmlns="http://uniprot.org/uniprot">
    <accession>A9C368</accession>
    <name>A9C368_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="4">ATP-dependent helicase HrpA</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ordered locus">Daci_4550</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="5" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX37179.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_4550"/>
    <dbReference type="PRIDE" id="A9C368"/>
    <dbReference type="EnsemblBacteria" id="ABX37179">
        <property type="protein sequence ID" value="ABX37179"/>
        <property type="gene ID" value="Daci_4550"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_4550"/>
    <dbReference type="eggNOG" id="COG1643">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_001832_3_3_4"/>
    <dbReference type="OMA" id="YERVTLY"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003676">
        <property type="term" value="F:nucleic acid binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003724">
        <property type="term" value="F:RNA helicase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003593">
        <property type="entry name" value="AAA+_ATPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011709">
        <property type="entry name" value="DEAD-box_helicase_OB_fold"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011545">
        <property type="entry name" value="DEAD/DEAH_box_helicase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007502">
        <property type="entry name" value="Helicase-assoc_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014001">
        <property type="entry name" value="Helicase_ATP-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001650">
        <property type="entry name" value="Helicase_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR024590">
        <property type="entry name" value="HrpA_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010222">
        <property type="entry name" value="RNA_helicase_HrpA"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00270">
        <property type="entry name" value="DEAD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF11898">
        <property type="entry name" value="DUF3418"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04408">
        <property type="entry name" value="HA2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00271">
        <property type="entry name" value="Helicase_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07717">
        <property type="entry name" value="OB_NTP_bind"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00382">
        <property type="entry name" value="AAA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00487">
        <property type="entry name" value="DEXDc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00847">
        <property type="entry name" value="HA2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00490">
        <property type="entry name" value="HELICc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01967">
        <property type="entry name" value="DEAH_box_HrpA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51192">
        <property type="entry name" value="HELICASE_ATP_BIND_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51194">
        <property type="entry name" value="HELICASE_CTER"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="4" id="KW-0347">Helicase</keyword>
    <keyword evidence="4" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="4" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Helicase ATP-binding" evidence="2">
        <location>
            <begin position="53"/>
            <end position="228"/>
        </location>
    </feature>
    <feature type="domain" description="Helicase C-terminal" evidence="3">
        <location>
            <begin position="252"/>
            <end position="429"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1071"/>
            <end position="1114"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS51192"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="PROSITE" id="PS51194"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="ABX37179.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="1391" mass="155634" checksum="7040492F4DDD4CE0" modified="2008-01-15" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="55" xmlns="http://uniprot.org/uniprot">
    <accession>A9BLK4</accession>
    <name>A9BLK4_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Type VI secretion system lysozyme-related protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Daci_3858</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="4" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX36489.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012205683.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_3858"/>
    <dbReference type="PRIDE" id="A9BLK4"/>
    <dbReference type="EnsemblBacteria" id="ABX36489">
        <property type="protein sequence ID" value="ABX36489"/>
        <property type="gene ID" value="Daci_3858"/>
    </dbReference>
    <dbReference type="GeneID" id="60688157"/>
    <dbReference type="KEGG" id="dac:Daci_3858"/>
    <dbReference type="eggNOG" id="COG3518">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_102944_0_0_4"/>
    <dbReference type="OMA" id="DPYPLEF"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007048">
        <property type="entry name" value="IraD/Gp25-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017737">
        <property type="entry name" value="TssE1-like"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04965">
        <property type="entry name" value="GPW_gp25"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR03357">
        <property type="entry name" value="VI_zyme"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="GPW_gp25" evidence="2">
        <location>
            <begin position="55"/>
            <end position="159"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="25"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="9"/>
            <end position="23"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF04965"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ABX36489.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="184" mass="21238" checksum="503B77113A60823C" modified="2008-01-15" version="1">MRPSPLNPMPTLRTRQNQATAAKDRLQPALLDRLTDHEPHLRTERPDAVFVNESRLREALLRDLGWLLNARDAWDHVEMEGLEHVQRSVINYGMPPLAGQLLSELDWSHVERSIRESILAFEPRILPKTLAVTLLASTEQLNHHNTLQFEIRCQFWSMPYPLELLLKTSLDLETGQVSLQNLRA</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="45" xmlns="http://uniprot.org/uniprot">
    <accession>A9BLQ6</accession>
    <name>A9BLQ6_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Daci_4214</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="4" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX36845.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012206017.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_4214"/>
    <dbReference type="PRIDE" id="A9BLQ6"/>
    <dbReference type="EnsemblBacteria" id="ABX36845">
        <property type="protein sequence ID" value="ABX36845"/>
        <property type="gene ID" value="Daci_4214"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_4214"/>
    <dbReference type="eggNOG" id="ENOG50339UJ">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_127117_1_0_4"/>
    <dbReference type="OMA" id="HESSYLT"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="2" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="116"/>
            <end position="141"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="79"/>
            <end position="110"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ABX36845.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="175" mass="17901" checksum="D781A10B49E49C44" modified="2008-01-15" version="1">MTPDRFEQLADAWGADLRRWPAQEQAAARALMEQPAFAPAARALLARANELDALLGSHAVAPPSAALASAVLAGLQARPGMANAPGQPSPHAWPQPRRTAPARPVRASGRKPWHGWWSGASIAGAGLAGVAAGALAMALLIGTALPTARPAQSEGGWWPGTAFDTGGALVEGSEE</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="80" xmlns="http://uniprot.org/uniprot">
    <accession>A9BM56</accession>
    <name>A9BM56_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="8">Dihydrofolate synthase/folylpolyglutamate synthase</fullName>
            <ecNumber evidence="7">6.3.2.12</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="13">Folylpoly-gamma-glutamate synthetase-dihydrofolate synthetase</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="12">Folylpolyglutamate synthetase</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="17" type="ordered locus">Daci_4772</name>
    </gene>
    <organism evidence="17 18">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="17 18" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="18">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="18" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="18">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="5">Functions in two distinct reactions of the de novo folate biosynthetic pathway. Catalyzes the addition of a glutamate residue to dihydropteroate (7,8-dihydropteroate or H2Pte) to form dihydrofolate (7,8-dihydrofolate monoglutamate or H2Pte-Glu). Also catalyzes successive additions of L-glutamate to tetrahydrofolate or 10-formyltetrahydrofolate or 5,10-methylenetetrahydrofolate, leading to folylpolyglutamate derivatives.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="3">
            <text>(6R)-5,10-methylenetetrahydrofolyl-(gamma-L-Glu)(n) + ATP + L-glutamate = (6R)-5,10-methylenetetrahydrofolyl-(gamma-L-Glu)(n+1) + ADP + H(+) + phosphate</text>
            <dbReference type="Rhea" id="RHEA:51912"/>
            <dbReference type="Rhea" id="RHEA-COMP:13257"/>
            <dbReference type="Rhea" id="RHEA-COMP:13258"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:29985"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:43474"/>
            <dbReference type="ChEBI" id="CHEBI:136572"/>
            <dbReference type="ChEBI" id="CHEBI:456216"/>
            <dbReference type="EC" id="6.3.2.17"/>
        </reaction>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>10-formyltetrahydrofolyl-(gamma-L-Glu)(n) + ATP + L-glutamate = 10-formyltetrahydrofolyl-(gamma-L-Glu)(n+1) + ADP + H(+) + phosphate</text>
            <dbReference type="Rhea" id="RHEA:51904"/>
            <dbReference type="Rhea" id="RHEA-COMP:13088"/>
            <dbReference type="Rhea" id="RHEA-COMP:14300"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:29985"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:43474"/>
            <dbReference type="ChEBI" id="CHEBI:134413"/>
            <dbReference type="ChEBI" id="CHEBI:456216"/>
            <dbReference type="EC" id="6.3.2.17"/>
        </reaction>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="2">
            <text>7,8-dihydropteroate + ATP + L-glutamate = 7,8-dihydrofolate + ADP + H(+) + phosphate</text>
            <dbReference type="Rhea" id="RHEA:23584"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:17839"/>
            <dbReference type="ChEBI" id="CHEBI:29985"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:43474"/>
            <dbReference type="ChEBI" id="CHEBI:57451"/>
            <dbReference type="ChEBI" id="CHEBI:456216"/>
            <dbReference type="EC" id="6.3.2.12"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="4">
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </cofactor>
    </comment>
    <comment type="pathway">
        <text evidence="6">Cofactor biosynthesis; tetrahydrofolate biosynthesis; 7,8-dihydrofolate from 2-amino-4-hydroxy-6-hydroxymethyl-7,8-dihydropteridine diphosphate and 4-aminobenzoate: step 2/2.</text>
    </comment>
    <comment type="similarity">
        <text evidence="14">Belongs to the folylpolyglutamate synthase family.</text>
    </comment>
    <dbReference type="EC" id="6.3.2.12" evidence="7"/>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX37401.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012206571.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_4772"/>
    <dbReference type="PRIDE" id="A9BM56"/>
    <dbReference type="EnsemblBacteria" id="ABX37401">
        <property type="protein sequence ID" value="ABX37401"/>
        <property type="gene ID" value="Daci_4772"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_4772"/>
    <dbReference type="eggNOG" id="COG0285">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_015869_1_0_4"/>
    <dbReference type="OMA" id="YFEMGTL"/>
    <dbReference type="UniPathway" id="UPA00077">
        <property type="reaction ID" value="UER00157"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008841">
        <property type="term" value="F:dihydrofolate synthase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004326">
        <property type="term" value="F:tetrahydrofolylpolyglutamate synthase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046656">
        <property type="term" value="P:folic acid biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046654">
        <property type="term" value="P:tetrahydrofolate biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniPathway"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.1190.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.190.20">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001645">
        <property type="entry name" value="Folylpolyglutamate_synth"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018109">
        <property type="entry name" value="Folylpolyglutamate_synth_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036565">
        <property type="entry name" value="Mur-like_cat_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004101">
        <property type="entry name" value="Mur_ligase_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036615">
        <property type="entry name" value="Mur_ligase_C_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013221">
        <property type="entry name" value="Mur_ligase_cen"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11136">
        <property type="entry name" value="PTHR11136"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02875">
        <property type="entry name" value="Mur_ligase_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08245">
        <property type="entry name" value="Mur_ligase_M"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF001563">
        <property type="entry name" value="Folylpolyglu_synth"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53244">
        <property type="entry name" value="SSF53244"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53623">
        <property type="entry name" value="SSF53623"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01499">
        <property type="entry name" value="folC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01012">
        <property type="entry name" value="FOLYLPOLYGLU_SYNT_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="14" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="11" id="KW-0289">Folate biosynthesis</keyword>
    <keyword evidence="14" id="KW-0436">Ligase</keyword>
    <keyword evidence="10" id="KW-0460">Magnesium</keyword>
    <keyword evidence="9" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="14" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="18" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Mur_ligase_M" evidence="16">
        <location>
            <begin position="48"/>
            <end position="191"/>
        </location>
    </feature>
    <feature type="domain" description="Mur_ligase_C" evidence="15">
        <location>
            <begin position="290"/>
            <end position="359"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00000058"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00000104"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00000809"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00001946"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00002714"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00004799"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00013023"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00019357"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00022842"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="ARBA" id="ARBA00022909"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="12">
        <source>
            <dbReference type="ARBA" id="ARBA00030048"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="13">
        <source>
            <dbReference type="ARBA" id="ARBA00032510"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="14">
        <source>
            <dbReference type="PIRNR" id="PIRNR001563"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="15">
        <source>
            <dbReference type="Pfam" id="PF02875"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="16">
        <source>
            <dbReference type="Pfam" id="PF08245"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="17">
        <source>
            <dbReference type="EMBL" id="ABX37401.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="18">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="440" mass="47384" checksum="83D556D5000F87B1" modified="2008-01-15" version="1">MHTSFPTLDAWLAYCERLHPKNIALGLDRVREVAQRLDLRFDCPVITVAGTNGKGSTCAMLEAVALQSGFRPGVYTSPHLVHFEERCRVGGEIVKAAELLPHFEAVEQARVQGTEVALTYFEFTTLAILRLMSQSRLDVAILEVGLGGRLDATNVIDADCAVITSIDIDHVEFLGPDRESIGREKAGIMRAGRPVVVSDPMPPQSVLDHAQAIGADLWRLGQDFNFSGDKQQWGWAGRGRRYAGLAYPALRGANQLVNASGALAALEAIRSRLPVTAQAVRTGLAMVELPGRFQIIPGQPTLVLDVAHNPHSVAALTANLDAMGYFPCTHAVFGAMHDKDLAPMLGRIAPLIDRWYLTDLPTPRAESAEVLRQKIEALPPAPGVPRELSVATFANPQLALDAAVLAAGPTDRIVVFGSFFTVGGVLQDGPPRLNAKHLGT</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="83" xmlns="http://uniprot.org/uniprot">
    <accession>A9BM69</accession>
    <name>A9BM69_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="4">Polyamine aminopropyltransferase</fullName>
        </recommendedName>
        <alternativeName>
            <fullName evidence="4">Putrescine aminopropyltransferase</fullName>
            <shortName evidence="4">PAPT</shortName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="4">Spermidine synthase</fullName>
            <shortName evidence="4">SPDS</shortName>
            <shortName evidence="4">SPDSY</shortName>
            <ecNumber evidence="4">2.5.1.16</ecNumber>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="4" type="primary">speE</name>
        <name evidence="7" type="ordered locus">Daci_4785</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="8" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="4">Catalyzes the irreversible transfer of a propylamine group from the amino donor S-adenosylmethioninamine (decarboxy-AdoMet) to putrescine (1,4-diaminobutane) to yield spermidine.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="4">
            <text>putrescine + S-adenosyl 3-(methylsulfanyl)propylamine = H(+) + S-methyl-5'-thioadenosine + spermidine</text>
            <dbReference type="Rhea" id="RHEA:12721"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:17509"/>
            <dbReference type="ChEBI" id="CHEBI:57443"/>
            <dbReference type="ChEBI" id="CHEBI:57834"/>
            <dbReference type="ChEBI" id="CHEBI:326268"/>
            <dbReference type="EC" id="2.5.1.16"/>
        </reaction>
    </comment>
    <comment type="pathway">
        <text evidence="4">Amine and polyamine biosynthesis; spermidine biosynthesis; spermidine from putrescine: step 1/1.</text>
    </comment>
    <comment type="subunit">
        <text evidence="4">Homodimer or homotetramer.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="4">Cell membrane</location>
            <topology evidence="4">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="4">Belongs to the spermidine/spermine synthase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="4">Lacks conserved residue(s) required for the propagation of feature annotation.</text>
    </comment>
    <dbReference type="EC" id="2.5.1.16" evidence="4"/>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX37414.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_4785"/>
    <dbReference type="PRIDE" id="A9BM69"/>
    <dbReference type="EnsemblBacteria" id="ABX37414">
        <property type="protein sequence ID" value="ABX37414"/>
        <property type="gene ID" value="Daci_4785"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_4785"/>
    <dbReference type="eggNOG" id="COG4262">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_034289_1_0_4"/>
    <dbReference type="OMA" id="SFGEWGY"/>
    <dbReference type="UniPathway" id="UPA00248">
        <property type="reaction ID" value="UER00314"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004766">
        <property type="term" value="F:spermidine synthase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008295">
        <property type="term" value="P:spermidine biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.150">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00198">
        <property type="entry name" value="Spermidine_synth"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR030374">
        <property type="entry name" value="PABS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR030373">
        <property type="entry name" value="PABS_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029063">
        <property type="entry name" value="SAM-dependent_MTases_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001045">
        <property type="entry name" value="Spermi_synthase"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53335">
        <property type="entry name" value="SSF53335"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01330">
        <property type="entry name" value="PABS_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51006">
        <property type="entry name" value="PABS_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="4" id="KW-0472">Membrane</keyword>
    <keyword evidence="3 4 5" id="KW-0620">Polyamine biosynthesis</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 4" id="KW-0745">Spermidine biosynthesis</keyword>
    <keyword evidence="1 4 5" id="KW-0808">Transferase</keyword>
    <keyword evidence="4" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="4" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="4">
        <location>
            <begin position="31"/>
            <end position="57"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="4">
        <location>
            <begin position="63"/>
            <end position="83"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="4">
        <location>
            <begin position="95"/>
            <end position="120"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="4">
        <location>
            <begin position="126"/>
            <end position="147"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="4">
        <location>
            <begin position="159"/>
            <end position="182"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="4">
        <location>
            <begin position="188"/>
            <end position="209"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="4">
        <location>
            <begin position="221"/>
            <end position="238"/>
        </location>
    </feature>
    <feature type="domain" description="PABS" evidence="6">
        <location>
            <begin position="233"/>
            <end position="468"/>
        </location>
    </feature>
    <feature type="region of interest" description="S-methyl-5'-thioadenosine binding" evidence="4">
        <location>
            <begin position="371"/>
            <end position="372"/>
        </location>
    </feature>
    <feature type="active site" description="Proton acceptor" evidence="4 5">
        <location>
            <position position="389"/>
        </location>
    </feature>
    <feature type="binding site" evidence="4">
        <location>
            <position position="263"/>
        </location>
        <ligand>
            <name>S-methyl-5'-thioadenosine</name>
            <dbReference type="ChEBI" id="CHEBI:17509"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="4">
        <location>
            <position position="293"/>
        </location>
        <ligand>
            <name>spermidine</name>
            <dbReference type="ChEBI" id="CHEBI:57834"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="4">
        <location>
            <position position="317"/>
        </location>
        <ligand>
            <name>spermidine</name>
            <dbReference type="ChEBI" id="CHEBI:57834"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="4">
        <location>
            <position position="337"/>
        </location>
        <ligand>
            <name>S-methyl-5'-thioadenosine</name>
            <dbReference type="ChEBI" id="CHEBI:17509"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023066"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023115"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00198"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00354"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="PROSITE" id="PS51006"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="ABX37414.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="527" mass="57697" checksum="1AEA1B7EC0D8DD5F" modified="2008-01-15" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="48" xmlns="http://uniprot.org/uniprot">
    <accession>A9BMF3</accession>
    <name>A9BMF3_DELAS</name>
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        <submittedName>
            <fullName evidence="2">Putative transmembrane protein</fullName>
        </submittedName>
    </protein>
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        <name evidence="2" type="ordered locus">Daci_4869</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX37498.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
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        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
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    <dbReference type="EnsemblBacteria" id="ABX37498">
        <property type="protein sequence ID" value="ABX37498"/>
        <property type="gene ID" value="Daci_4869"/>
    </dbReference>
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    </dbReference>
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        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
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        <property type="entry name" value="DUF3619"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12279">
        <property type="entry name" value="DUF3619"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1 2" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="85"/>
            <end position="105"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX37498.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="152" mass="16267" checksum="B529A77C95232C47" modified="2008-01-15" version="1">MKTAPTLTLHSEMAADRIARRITARLGDGEALLPYDITERLRAGRERALSVRRRELRAAPVQAASATQAQVGTLTLGSGDEGGTWWRALISAVPVLALIVGLVVVNVQTDQTGLTEVAEVDTALLTDDLPPAAYADPGFIQYLKTSATNTER</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="52" xmlns="http://uniprot.org/uniprot">
    <accession>A9BMG0</accession>
    <name>A9BMG0_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Daci_4876</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="2" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX37505.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012206675.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_4876"/>
    <dbReference type="PRIDE" id="A9BMG0"/>
    <dbReference type="EnsemblBacteria" id="ABX37505">
        <property type="protein sequence ID" value="ABX37505"/>
        <property type="gene ID" value="Daci_4876"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_4876"/>
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        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_036032_1_0_4"/>
    <dbReference type="OMA" id="HFEVCYY"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016181">
        <property type="entry name" value="Acyl_CoA_acyltransferase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007434">
        <property type="entry name" value="FemAB-like"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04339">
        <property type="entry name" value="FemAB_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55729">
        <property type="entry name" value="SSF55729"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ABX37505.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="407" mass="45150" checksum="AF200C6E69C97C0D" modified="2008-01-15" version="1">MAETAIITRVLDSVQQLDAQAWNALLASQAAPTPFMRHEYLSALESSGSAVPQTGWAGRVVTLWQGGELVAACPVYAKAHSYGEYVFDFAWARAYAQHGLDYYPKGVLAVPFTPVPGSRLLARTPLLRAALVRAVREWAQAQQLSSLHLLFSDAEDLAACDADGWMQRSTVQFHWSNQGADGAGHSDFDRFLATLNQEKRKKIRQERRKVHEAGVRFRALHGPDMGAQDWAFFYRCHERTYLEHGNAPYLEPAFFEAMARQMPEAWLMFIAERDGQPMACSLIALDAAAARLSAGHTGGRAHAPQAPQGTAYGRYWGALERVDCLHFEACYYQPIAWCIERGIAHFEGGAQGEHKMARALLPVVTPSAHWIAHPSFADAISRFLDREGEGMAGYLQELQAHSPLRQG</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="95" xmlns="http://uniprot.org/uniprot">
    <accession>A9BMM5</accession>
    <name>A9BMM5_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="9">Zinc metalloprotease</fullName>
            <ecNumber evidence="9">3.4.24.-</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="11" type="ordered locus">Daci_4941</name>
    </gene>
    <organism evidence="11 12">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="11 12" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="12">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="12" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="12">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="1 9">
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </cofactor>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="2">Membrane</location>
            <topology evidence="2">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="3 9">Belongs to the peptidase M50B family.</text>
    </comment>
    <dbReference type="EC" id="3.4.24.-" evidence="9"/>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX37570.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012206740.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_4941"/>
    <dbReference type="PRIDE" id="A9BMM5"/>
    <dbReference type="EnsemblBacteria" id="ABX37570">
        <property type="protein sequence ID" value="ABX37570"/>
        <property type="gene ID" value="Daci_4941"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_4941"/>
    <dbReference type="eggNOG" id="COG0750">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_025778_0_1_4"/>
    <dbReference type="OMA" id="QYMVGFG"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004222">
        <property type="term" value="F:metalloendopeptidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006508">
        <property type="term" value="P:proteolysis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.30.42.10">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001478">
        <property type="entry name" value="PDZ"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041489">
        <property type="entry name" value="PDZ_6"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036034">
        <property type="entry name" value="PDZ_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004387">
        <property type="entry name" value="Pept_M50_Zn"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008915">
        <property type="entry name" value="Peptidase_M50"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR42837">
        <property type="entry name" value="PTHR42837"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF17820">
        <property type="entry name" value="PDZ_6"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02163">
        <property type="entry name" value="Peptidase_M50"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00228">
        <property type="entry name" value="PDZ"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50156">
        <property type="entry name" value="SSF50156"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00054">
        <property type="entry name" value="TIGR00054"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5 9" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="8 9" id="KW-0472">Membrane</keyword>
    <keyword evidence="9" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="9 11" id="KW-0482">Metalloprotease</keyword>
    <keyword evidence="11" id="KW-0645">Protease</keyword>
    <keyword evidence="12" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4 9" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="7 9" id="KW-1133">Transmembrane helix</keyword>
    <keyword evidence="6 9" id="KW-0862">Zinc</keyword>
    <feature type="transmembrane region" description="Helical" evidence="9">
        <location>
            <begin position="96"/>
            <end position="119"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="9">
        <location>
            <begin position="383"/>
            <end position="405"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="9">
        <location>
            <begin position="431"/>
            <end position="448"/>
        </location>
    </feature>
    <feature type="domain" description="PDZ" evidence="10">
        <location>
            <begin position="195"/>
            <end position="286"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001947"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00007931"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022833"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="RuleBase" id="RU362031"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="10">
        <source>
            <dbReference type="SMART" id="SM00228"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="EMBL" id="ABX37570.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="456" mass="49521" checksum="ACF381C6540792F8" modified="2008-01-15" version="1">MLLTVVAFVVALGVLIAVHEWGHYRVAVACGVKVLRFSVGFGRPILRWKRKGSDTEFVIGALPLGGYVRMLDEREGEVPADQRHLAFNTQPLRARAAIVAAGPVANLVLAIALLAIVNWMGMQEPVARLATPPAGTVLQMAGVQGGDRVLRIALGDQEWEEVRSINDLRWTLTRAALDDESVRMEVLQGRRTAPSELRLALAGQVQGEPDAAFFERLGLLGPWTQPVLDKVIAGGAAEKAGLRQGDLVLRVGSTLVDDGTQLRNLIRKMGASGQVQQQVWLVERDGRQLQIPVLPDLGRSEDGKESIARISAYIGSAPEMALVQRGPLEGLWAGVQRTWELSSLTLRMMGRMVIGEASLKNISGPLTIADYAGRSASMGLVQYLSFLALISISLGVLNLLPLPVLDGGHLMYYLWEGVTGRSVSEVWAGRLQRAGVAVLMMMMSVAFFNDINRLWG</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="49" xmlns="http://uniprot.org/uniprot">
    <accession>A9BMT5</accession>
    <name>A9BMT5_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Conserved hypothetical signal peptide protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Daci_5001</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="4" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX37630.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012206800.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_5001"/>
    <dbReference type="PRIDE" id="A9BMT5"/>
    <dbReference type="EnsemblBacteria" id="ABX37630">
        <property type="protein sequence ID" value="ABX37630"/>
        <property type="gene ID" value="Daci_5001"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_5001"/>
    <dbReference type="eggNOG" id="ENOG5032QZV">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_099362_0_0_4"/>
    <dbReference type="OMA" id="YRCGNEY"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="2">
        <location>
            <begin position="1"/>
            <end position="19"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5002732335" evidence="2">
        <location>
            <begin position="20"/>
            <end position="167"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="53"/>
            <end position="96"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="148"/>
            <end position="167"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="153"/>
            <end position="167"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ABX37630.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="167" mass="18051" checksum="A1058738F321084C" modified="2008-01-15" version="1">MKKLFVSLLLPLLSVGAWSQDVIYRCGNEYTNNVSQAKAKDCKPVDGGHVTVIHGGSKPAASGGSQAPRTSATPAAGSPAPAKVNSSAQKARDSDARTILESELARAQEKLTQLRQEYNDGNPQRTALELRNPQGYLERVEQLKSSISRQEGDVAGIRRELDRLPKN</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="39" xmlns="http://uniprot.org/uniprot">
    <accession>A9BN03</accession>
    <name>A9BN03_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Daci_5069</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="2" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX37698.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_5069"/>
    <dbReference type="PRIDE" id="A9BN03"/>
    <dbReference type="EnsemblBacteria" id="ABX37698">
        <property type="protein sequence ID" value="ABX37698"/>
        <property type="gene ID" value="Daci_5069"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_5069"/>
    <dbReference type="eggNOG" id="ENOG50339VY">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_1924015_0_0_4"/>
    <dbReference type="OMA" id="PHALWHA"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ABX37698.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="144" mass="15784" checksum="D2EAED51FB8502A1" modified="2008-01-15" version="1">MRLWRGRMHVQRYQLKRKENPMHPSKSESLAQDEEYLLPENEAALAATLALMTGFGHGCCDTHRPAMAARVAEQLENLACAGGLSHDMRALLGRLQQRWQAVADAGAPSRSHRAVSEAGVSLPGVHAAQPVPHALWHAPLDTLQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="55" xmlns="http://uniprot.org/uniprot">
    <accession>A9BN22</accession>
    <name>A9BN22_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Methyltransferase type 11</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_5088</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX37717.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_5088"/>
    <dbReference type="PRIDE" id="A9BN22"/>
    <dbReference type="EnsemblBacteria" id="ABX37717">
        <property type="protein sequence ID" value="ABX37717"/>
        <property type="gene ID" value="Daci_5088"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_5088"/>
    <dbReference type="eggNOG" id="COG0500">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_056435_5_2_4"/>
    <dbReference type="OMA" id="VVTNYLW"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008168">
        <property type="term" value="F:methyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0032259">
        <property type="term" value="P:methylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.150">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041698">
        <property type="entry name" value="Methyltransf_25"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029063">
        <property type="entry name" value="SAM-dependent_MTases_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13649">
        <property type="entry name" value="Methyltransf_25"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53335">
        <property type="entry name" value="SSF53335"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0489">Methyltransferase</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Methyltransf_25" evidence="1">
        <location>
            <begin position="47"/>
            <end position="125"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF13649"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX37717.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="212" mass="22930" checksum="43CEC44F7C2E3825" modified="2008-01-15" version="1">MEAERRRPGGTMSAAFTLFPNLHMHAATPPSPWIQRWSHLLAPQASVLDVACGPGRHMRWFQARGHAVTGVDRDAQALAGLQGVGELLCADIENGPWPLPGRQFGAVVVTHYLWRPLWPALLDSVAPGGVLLYETFAQGNEAFGKPSRPDFLLAPGELLQACTGWHIVAYEHGQLGEPDRMVQRIAALRPDATGREPVAMLAHQKASGSAIA</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="64" xmlns="http://uniprot.org/uniprot">
    <accession>A9BNH4</accession>
    <name>A9BNH4_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Putative transmembrane protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Daci_5240</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="4" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX37869.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_5240"/>
    <dbReference type="PRIDE" id="A9BNH4"/>
    <dbReference type="EnsemblBacteria" id="ABX37869">
        <property type="protein sequence ID" value="ABX37869"/>
        <property type="gene ID" value="Daci_5240"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_5240"/>
    <dbReference type="eggNOG" id="COG3170">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_007099_0_0_4"/>
    <dbReference type="OMA" id="QHSVFGA"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.58.2200">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.10.350.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038440">
        <property type="entry name" value="FimV_C_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036779">
        <property type="entry name" value="LysM_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020011">
        <property type="entry name" value="Motility_prot_FimV_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020012">
        <property type="entry name" value="Motility_prot_FimV_N"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR03505">
        <property type="entry name" value="FimV_core"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR03504">
        <property type="entry name" value="FimV_Cterm"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0732">Signal</keyword>
    <keyword evidence="3" id="KW-0812">Transmembrane</keyword>
    <feature type="signal peptide" evidence="2">
        <location>
            <begin position="1"/>
            <end position="26"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5002732938" evidence="2">
        <location>
            <begin position="27"/>
            <end position="964"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="142"/>
            <end position="206"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="295"/>
            <end position="335"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="405"/>
            <end position="424"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="440"/>
            <end position="473"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="539"/>
            <end position="565"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="717"/>
            <end position="739"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="796"/>
            <end position="838"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Pro residues" evidence="1">
        <location>
            <begin position="455"/>
            <end position="472"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="540"/>
            <end position="561"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="821"/>
            <end position="838"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ABX37869.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="964" mass="98427" checksum="1D16BBEB7209F03C" modified="2008-01-15" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="53" xmlns="http://uniprot.org/uniprot">
    <accession>A9BNM3</accession>
    <name>A9BNM3_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Putative transmembrane protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_5289</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX37918.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012207087.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_5289"/>
    <dbReference type="PRIDE" id="A9BNM3"/>
    <dbReference type="EnsemblBacteria" id="ABX37918">
        <property type="protein sequence ID" value="ABX37918"/>
        <property type="gene ID" value="Daci_5289"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_5289"/>
    <dbReference type="eggNOG" id="COG5343">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_075065_0_0_4"/>
    <dbReference type="OMA" id="KDYELWM"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018764">
        <property type="entry name" value="Anti-sigma_K_RskA"/>
    </dbReference>
    <dbReference type="Pfam" id="PF10099">
        <property type="entry name" value="RskA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1 2" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="108"/>
            <end position="131"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX37918.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="275" mass="29435" checksum="77F03A6923271317" modified="2008-01-15" version="1">MNISRHPELLDRLAAAYALGTLRGAARRRFEQLARDQAPVRAAALLWQGRWSALSEMQAPVRPDDAVWVRIDNLLQAEKARAAQAHRRRADDAPGMARRTEAAVGRALAWWRGAAVLGACATVAAVAVGLWSHQDLRQSGERQLAVLNNQLQATQAALQAAPQIQYVAVLADDKADASMLVTFDPGKNTLVLQRVGDFHEASDKSLQLWALPPQGGPQSLGVLGRDKLVKLTAAAAEVQGVPALAISLEPKGGVPSQTGPTGPVLFKGALIRRDL</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="85" xmlns="http://uniprot.org/uniprot">
    <accession>A9BNM4</accession>
    <name>A9BNM4_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="4">RNA polymerase, sigma-24 subunit, ECF subfamily</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ordered locus">Daci_5290</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="5" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the sigma-70 factor family. ECF subfamily.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX37919.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012207088.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_5290"/>
    <dbReference type="PRIDE" id="A9BNM4"/>
    <dbReference type="EnsemblBacteria" id="ABX37919">
        <property type="protein sequence ID" value="ABX37919"/>
        <property type="gene ID" value="Daci_5290"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_5290"/>
    <dbReference type="eggNOG" id="COG1595">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_047691_9_3_4"/>
    <dbReference type="OMA" id="AAPMTWM"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016987">
        <property type="term" value="F:sigma factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006352">
        <property type="term" value="P:DNA-templated transcription, initiation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0050896">
        <property type="term" value="P:response to stimulus"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR039425">
        <property type="entry name" value="RNA_pol_sigma-70-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014284">
        <property type="entry name" value="RNA_pol_sigma-70_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007627">
        <property type="entry name" value="RNA_pol_sigma70_r2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013249">
        <property type="entry name" value="RNA_pol_sigma70_r4_t2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013325">
        <property type="entry name" value="RNA_pol_sigma_r2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013324">
        <property type="entry name" value="RNA_pol_sigma_r3/r4-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43133">
        <property type="entry name" value="PTHR43133"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04542">
        <property type="entry name" value="Sigma70_r2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08281">
        <property type="entry name" value="Sigma70_r4_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF88659">
        <property type="entry name" value="SSF88659"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF88946">
        <property type="entry name" value="SSF88946"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR02937">
        <property type="entry name" value="sigma70-ECF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Sigma70_r2" evidence="2">
        <location>
            <begin position="28"/>
            <end position="95"/>
        </location>
    </feature>
    <feature type="domain" description="Sigma70_r4_2" evidence="3">
        <location>
            <begin position="135"/>
            <end position="186"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00010641"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF04542"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF08281"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="ABX37919.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="194" mass="22043" checksum="90AE034E19108CC9" modified="2008-01-15" version="1">MGTTPTDQELMDLLDRIAAQDEPALRSLYEATSSRLYGLALRILRHKDWAEDVLQDSYLHIWRSASGYRGTLSPPLAWMGLVVRSRALDFLRRRRAERLHLNEEFDEAQLAAHGGGDDESQGPLQLAEASEQAVALYQCLERLEGRQREVVSLAYLRDLSHGELAGQLQLPLGTVKTWIRRGLEQLRRCLSRHA</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="79" xmlns="http://uniprot.org/uniprot">
    <accession>A9BNN0</accession>
    <name>A9BNN0_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Transcriptional regulator, MarR family with acetyltransferase activity</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Daci_5296</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="4" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX37925.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012207094.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_5296"/>
    <dbReference type="PRIDE" id="A9BNN0"/>
    <dbReference type="EnsemblBacteria" id="ABX37925">
        <property type="protein sequence ID" value="ABX37925"/>
        <property type="gene ID" value="Daci_5296"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_5296"/>
    <dbReference type="eggNOG" id="COG0456">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="eggNOG" id="COG1846">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_065219_0_1_4"/>
    <dbReference type="OMA" id="NEHIYDS"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003700">
        <property type="term" value="F:DNA-binding transcription factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008080">
        <property type="term" value="F:N-acetyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd00090">
        <property type="entry name" value="HTH_ARSR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016181">
        <property type="entry name" value="Acyl_CoA_acyltransferase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011991">
        <property type="entry name" value="ArsR-like_HTH"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000182">
        <property type="entry name" value="GNAT_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000835">
        <property type="entry name" value="HTH_MarR-typ"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036390">
        <property type="entry name" value="WH_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00583">
        <property type="entry name" value="Acetyltransf_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12802">
        <property type="entry name" value="MarR_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00598">
        <property type="entry name" value="HTHMARR"/>
    </dbReference>
    <dbReference type="SMART" id="SM00347">
        <property type="entry name" value="HTH_MARR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46785">
        <property type="entry name" value="SSF46785"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55729">
        <property type="entry name" value="SSF55729"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51186">
        <property type="entry name" value="GNAT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50995">
        <property type="entry name" value="HTH_MARR_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="HTH marR-type" evidence="1">
        <location>
            <begin position="5"/>
            <end position="143"/>
        </location>
    </feature>
    <feature type="domain" description="N-acetyltransferase" evidence="2">
        <location>
            <begin position="164"/>
            <end position="324"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS50995"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS51186"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ABX37925.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="337" mass="36815" checksum="BDC343DE5C3E2C24" modified="2008-01-15" version="1">MPQHDLSLVDGIRAASRQMVRELGFMQATLAATDYPPSAVHAILEIGTQGRMAASQLAQALGLEKSSVSRMVRKLVEAGELKEAADGEDGRVKQLALTAKGRRTLAAIEAFGRQQVTAALDRMQAPQQQAVAQGLALYARALQAHRQEEPLPQPQPVPVPAQIQVLPGYRPGCLGRIVDMHARFYARHAGFGVFFESRVASGLAEFAGRLDKPCNQLWTALDGDRIVGSVAIDGEDLGKHPEGRQAHLRWFILEDGLRGAGTGRQLLQQALAFCDQQAFEATQLWTFRGLDAARRLYESSGFTLAEEWPGQQWGEPVIEQRFVRPRPAVAAWAGQAP</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="82" xmlns="http://uniprot.org/uniprot">
    <accession>A9BNQ2</accession>
    <name>A9BNQ2_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Two component transcriptional regulator, LytTR family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ordered locus">Daci_5318</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="5" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX37947.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012207116.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_5318"/>
    <dbReference type="PRIDE" id="A9BNQ2"/>
    <dbReference type="EnsemblBacteria" id="ABX37947">
        <property type="protein sequence ID" value="ABX37947"/>
        <property type="gene ID" value="Daci_5318"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_5318"/>
    <dbReference type="eggNOG" id="COG3279">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_000445_14_1_4"/>
    <dbReference type="OMA" id="THISART"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000160">
        <property type="term" value="P:phosphorelay signal transduction system"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011006">
        <property type="entry name" value="CheY-like_superfamily"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007492">
        <property type="entry name" value="LytTR_DNA-bd_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001789">
        <property type="entry name" value="Sig_transdc_resp-reg_receiver"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR039420">
        <property type="entry name" value="WalR-like"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR48111">
        <property type="entry name" value="PTHR48111"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04397">
        <property type="entry name" value="LytTR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00072">
        <property type="entry name" value="Response_reg"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00850">
        <property type="entry name" value="LytTR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00448">
        <property type="entry name" value="REC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52172">
        <property type="entry name" value="SSF52172"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50930">
        <property type="entry name" value="HTH_LYTTR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50110">
        <property type="entry name" value="RESPONSE_REGULATORY"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0597">Phosphoprotein</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Response regulatory" evidence="2">
        <location>
            <begin position="2"/>
            <end position="124"/>
        </location>
    </feature>
    <feature type="domain" description="HTH LytTR-type" evidence="3">
        <location>
            <begin position="140"/>
            <end position="248"/>
        </location>
    </feature>
    <feature type="modified residue" description="4-aspartylphosphate" evidence="1">
        <location>
            <position position="61"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00169"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS50110"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="PROSITE" id="PS50930"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="ABX37947.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="253" mass="27656" checksum="345DDDD5B16B8ED2" modified="2008-01-15" version="1">MHILIVDDEALARARLRTLLADVEACTGTGPHQVSEAADARQAMAVLQAPGPRAVELALLDIHMPGQDGLALAHALRRLPLPPAVVFVTAHAGHAVEAFDLDAADYLTKPVRRERLQQALAKAARTAVHQTAERDSGPVLLIQDRGTTVRLPLSEVLYLKAEQKYVTVRTVGRSYILDGALADLETRHADHLLRVHRNALVARSALRALERHDDPTEGEGWALRLHGIPELLMVSRRQLPQVRAAIRDEGQPG</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="43" xmlns="http://uniprot.org/uniprot">
    <accession>A9BNR4</accession>
    <name>A9BNR4_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_5330</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX37959.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012207128.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_5330"/>
    <dbReference type="PRIDE" id="A9BNR4"/>
    <dbReference type="EnsemblBacteria" id="ABX37959">
        <property type="protein sequence ID" value="ABX37959"/>
        <property type="gene ID" value="Daci_5330"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_5330"/>
    <dbReference type="eggNOG" id="COG5266">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_093838_1_0_4"/>
    <dbReference type="OMA" id="ANHFTAD"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="1">
        <location>
            <begin position="1"/>
            <end position="28"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5002734926" evidence="1">
        <location>
            <begin position="29"/>
            <end position="210"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX37959.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="210" mass="22679" checksum="964F07AD1EF5A7D6" modified="2008-01-15" version="1">MTEPSRILRSTAAWLAAAAALAVPAAHADYLWLQQDAGQARAYAGELRKPLEQLPALEDARQVLPDGKSLPLKADANHFTADAGQGDVRIAATRPGANGVLTYYQARFGRNDTKAVNDLELVPTTAGGDTFQLVFKGRKVAASQVNVQTSEGWYRTLAPSQDGTVSFKPYFPGLYVLEVTARVDNGSVTLDGKKYTDVRHTTTLSFEVKP</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="58" xmlns="http://uniprot.org/uniprot">
    <accession>A9BPA0</accession>
    <name>A9BPA0_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Outer membrane efflux protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Daci_0017</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="4" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the outer membrane factor (OMF) (TC 1.B.17) family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX32664.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_0017"/>
    <dbReference type="PRIDE" id="A9BPA0"/>
    <dbReference type="EnsemblBacteria" id="ABX32664">
        <property type="protein sequence ID" value="ABX32664"/>
        <property type="gene ID" value="Daci_0017"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_0017"/>
    <dbReference type="eggNOG" id="COG1538">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_012817_14_0_4"/>
    <dbReference type="OMA" id="GSINEHR"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015562">
        <property type="term" value="F:efflux transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003423">
        <property type="entry name" value="OMP_efflux"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02321">
        <property type="entry name" value="OEP"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="1"/>
            <end position="30"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="2">
        <location>
            <begin position="16"/>
            <end position="30"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00007613"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ABX32664.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="473" mass="50951" checksum="191086FED059BA63" modified="2008-01-15" version="1">MKKSDSPLSGFAASPSRFAGGTTPSPRGGSCSASLAFGRAGFAGSARYRALFVAVALCCGAGSALAQQAVPAVPAITAAPASEVAPAAAPQQPVGMQEYLQMVVRNQPQLAAQRLQIGIAQADSRTAAAFPNPTASYSSKPGEKQWGIEQPLPIFGQRRLRMENARKGETAARANVEVAVATTLNDAATAFIDLLMTQQRLKVWEEAQEALNGAGNIVRGQIEAGARSRYDGARLSLQQAQMAMQVSQAQSDWQDAASHAAALAALPQWAPRATGSLQAVPVGQLLNEQELWEAARQRLPVLVAAQAELDQLRHKVELERREALPTPSVSVARVRNRLDGNYNQIGVSVELPLFDRREGPIARAQVEAEQAQLRYDAALIEARTELQRAIKQLKLRRDAVRAYEKQGLAQIAPLNQMAQDAYKLGQGSILELIDSLGSINEHRLEHLDLVKEMMLAEWQVRVASGDLPMWAAP</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="80" xmlns="http://uniprot.org/uniprot">
    <accession>A9BPB7</accession>
    <name>A9BPB7_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Transcriptional regulator, MerR family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ordered locus">Daci_0034</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="6" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX32681.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012201974.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_0034"/>
    <dbReference type="PRIDE" id="A9BPB7"/>
    <dbReference type="EnsemblBacteria" id="ABX32681">
        <property type="protein sequence ID" value="ABX32681"/>
        <property type="gene ID" value="Daci_0034"/>
    </dbReference>
    <dbReference type="GeneID" id="60690445"/>
    <dbReference type="KEGG" id="dac:Daci_0034"/>
    <dbReference type="eggNOG" id="COG0789">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_060077_2_0_4"/>
    <dbReference type="OMA" id="HTLAFIK"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005507">
        <property type="term" value="F:copper ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003700">
        <property type="term" value="F:DNA-binding transcription factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0045893">
        <property type="term" value="P:positive regulation of transcription, DNA-templated"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd01108">
        <property type="entry name" value="HTH_CueR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011789">
        <property type="entry name" value="CueR"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009061">
        <property type="entry name" value="DNA-bd_dom_put_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000551">
        <property type="entry name" value="MerR-type_HTH_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015358">
        <property type="entry name" value="Tscrpt_reg_MerR_DNA-bd"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00376">
        <property type="entry name" value="MerR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF09278">
        <property type="entry name" value="MerR-DNA-bind"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00040">
        <property type="entry name" value="HTHMERR"/>
    </dbReference>
    <dbReference type="SMART" id="SM00422">
        <property type="entry name" value="HTH_MERR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46955">
        <property type="entry name" value="SSF46955"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR02044">
        <property type="entry name" value="CueR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00552">
        <property type="entry name" value="HTH_MERR_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50937">
        <property type="entry name" value="HTH_MERR_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0804">Transcription</keyword>
    <keyword evidence="1" id="KW-0805">Transcription regulation</keyword>
    <feature type="domain" description="HTH merR-type" evidence="4">
        <location>
            <begin position="12"/>
            <end position="79"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023015"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023163"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="PROSITE" id="PS50937"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="ABX32681.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="144" mass="16051" checksum="AA5A57B314D43410" modified="2008-01-15" version="1">MSAHPAQHWPVSIGEAARRAGVSARMVRHYEAQGLLPPMHRTDGGYRQYAEADVHALRFIRRGRDLGFSMDEIATLLGLWQDKSRASSQVKAIAQRHIDELTERIAAMQAMQRTLKTLVHCCHGDDRPDCPILDDLAAQESAAP</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="49" xmlns="http://uniprot.org/uniprot">
    <accession>A9BPY9</accession>
    <name>A9BPY9_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Daci_0558</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="2" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX33204.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012202490.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_0558"/>
    <dbReference type="PRIDE" id="A9BPY9"/>
    <dbReference type="EnsemblBacteria" id="ABX33204">
        <property type="protein sequence ID" value="ABX33204"/>
        <property type="gene ID" value="Daci_0558"/>
    </dbReference>
    <dbReference type="GeneID" id="60690901"/>
    <dbReference type="KEGG" id="dac:Daci_0558"/>
    <dbReference type="eggNOG" id="COG2018">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_139202_2_1_4"/>
    <dbReference type="OMA" id="EIDGCIG"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ABX33204.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="119" mass="12807" checksum="6E4A04400684072D" modified="2008-01-15" version="1">MASIHDSLNGLLGIDGALCAALVDSTSGMLMGSVGSGLDMELAAAGNTEVVRAKLKTMRMLKLDDAIDDILITLTHQYHIIRPVAAHEGVFFYLVLDKSRSNLALARRKVQDVEKDLAL</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="54" xmlns="http://uniprot.org/uniprot">
    <accession>A9BQ11</accession>
    <name>A9BQ11_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Beta-lactamase domain protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_0580</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX33226.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012202512.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_0580"/>
    <dbReference type="PRIDE" id="A9BQ11"/>
    <dbReference type="EnsemblBacteria" id="ABX33226">
        <property type="protein sequence ID" value="ABX33226"/>
        <property type="gene ID" value="Daci_0580"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_0580"/>
    <dbReference type="eggNOG" id="COG0491">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_056342_4_0_4"/>
    <dbReference type="OMA" id="GDWMRGT"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.60.15.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001279">
        <property type="entry name" value="Metallo-B-lactamas"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036866">
        <property type="entry name" value="RibonucZ/Hydroxyglut_hydro"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00753">
        <property type="entry name" value="Lactamase_B"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00849">
        <property type="entry name" value="Lactamase_B"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56281">
        <property type="entry name" value="SSF56281"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Lactamase_B" evidence="1">
        <location>
            <begin position="34"/>
            <end position="224"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="SMART" id="SM00849"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX33226.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="321" mass="35636" checksum="EA28B59CF9005443" modified="2008-01-15" version="1">MTTKTFASAADLEIKQVSFDKLSEHAYAYTAEGDPNTGIIIGDDAVMVIDTQATPVMAQDVIRRIREVTDKPIKYVTLSHYHAVRVLGASAFFAEGAEHIIASQDTYDLIVERGEQDKASEIGRFPRLFQNVESVPEGMTWPTLTFTGKMTLWLGKLEVQILQLGRGHTKGDTVVWLPQDKVLFSGDLVEFGATPYAGDAYFQDWPHTLDAIAALQPEKLVPGRGAALQTPAEVQAGLAGTRDFISDLWTEVKAGADAQQDLRKVYEAAFAKLQPKYGQWVIFNHCMPFDVTRAYDEASGHADPRIWTAERDRQMWLALEG</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="78" xmlns="http://uniprot.org/uniprot">
    <accession>A9BQK2</accession>
    <name>A9BQK2_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="4">RNA polymerase, sigma-24 subunit, ECF subfamily</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ordered locus">Daci_0057</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="5" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the sigma-70 factor family. ECF subfamily.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX32704.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_0057"/>
    <dbReference type="PRIDE" id="A9BQK2"/>
    <dbReference type="EnsemblBacteria" id="ABX32704">
        <property type="protein sequence ID" value="ABX32704"/>
        <property type="gene ID" value="Daci_0057"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_0057"/>
    <dbReference type="eggNOG" id="COG1595">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_047691_3_1_4"/>
    <dbReference type="OMA" id="FRYAFWL"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016987">
        <property type="term" value="F:sigma factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006352">
        <property type="term" value="P:DNA-templated transcription, initiation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0050896">
        <property type="term" value="P:response to stimulus"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR039425">
        <property type="entry name" value="RNA_pol_sigma-70-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014284">
        <property type="entry name" value="RNA_pol_sigma-70_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007627">
        <property type="entry name" value="RNA_pol_sigma70_r2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013249">
        <property type="entry name" value="RNA_pol_sigma70_r4_t2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013325">
        <property type="entry name" value="RNA_pol_sigma_r2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013324">
        <property type="entry name" value="RNA_pol_sigma_r3/r4-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43133">
        <property type="entry name" value="PTHR43133"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04542">
        <property type="entry name" value="Sigma70_r2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08281">
        <property type="entry name" value="Sigma70_r4_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF88659">
        <property type="entry name" value="SSF88659"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF88946">
        <property type="entry name" value="SSF88946"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR02937">
        <property type="entry name" value="sigma70-ECF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Sigma70_r2" evidence="2">
        <location>
            <begin position="17"/>
            <end position="79"/>
        </location>
    </feature>
    <feature type="domain" description="Sigma70_r4_2" evidence="3">
        <location>
            <begin position="110"/>
            <end position="161"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00010641"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF04542"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF08281"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="ABX32704.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="196" mass="22136" checksum="51ABF86EB23CC442" modified="2008-01-15" version="1">MLLCRMISTAESRYNQWVREHYRFLLRSAWALTGSRALAEDVVQDCFTSAWRFRHQLREAAMARAWLFQIMRRHAFRHLAPSAHLVSDDEALDQHPAPTPSPSALDDRLDVVKALARIAPIHREVLVLYYFDDMPTAQMAEALDIAPGTVLSRLSRARDALKAALEQAAPAPAPETASVIPLRPTPLRATRYQGLK</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="58" xmlns="http://uniprot.org/uniprot">
    <accession>A9BQL9</accession>
    <name>A9BQL9_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Benzoyl-CoA-dihydrodiol lyase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Daci_0074</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="2" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX32721.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012202014.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_0074"/>
    <dbReference type="PRIDE" id="A9BQL9"/>
    <dbReference type="EnsemblBacteria" id="ABX32721">
        <property type="protein sequence ID" value="ABX32721"/>
        <property type="gene ID" value="Daci_0074"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_0074"/>
    <dbReference type="eggNOG" id="COG1024">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_489737_0_0_4"/>
    <dbReference type="OMA" id="DKRHVRH"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016829">
        <property type="term" value="F:lyase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017633">
        <property type="entry name" value="Benz-CoA_dihydrodiol_lyase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029045">
        <property type="entry name" value="ClpP/crotonase-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001753">
        <property type="entry name" value="Enoyl-CoA_hydra/iso"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00378">
        <property type="entry name" value="ECH_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52096">
        <property type="entry name" value="SSF52096"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR03222">
        <property type="entry name" value="benzo_boxC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0456">Lyase</keyword>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ABX32721.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="556" mass="61130" checksum="0A6591D00A0E49A0" modified="2008-01-15" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="58" xmlns="http://uniprot.org/uniprot">
    <accession>A9BQR9</accession>
    <name>A9BQR9_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="4">RND efflux system, outer membrane lipoprotein, NodT family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ordered locus">Daci_0125</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="5" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="2">Cell membrane</location>
            <topology evidence="2">Lipid-anchor</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="1 2">Belongs to the outer membrane factor (OMF) (TC 1.B.17) family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX32771.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_0125"/>
    <dbReference type="PRIDE" id="A9BQR9"/>
    <dbReference type="EnsemblBacteria" id="ABX32771">
        <property type="protein sequence ID" value="ABX32771"/>
        <property type="gene ID" value="Daci_0125"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_0125"/>
    <dbReference type="eggNOG" id="COG1538">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_012817_13_0_4"/>
    <dbReference type="OMA" id="WWRNFHD"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015562">
        <property type="term" value="F:efflux transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003423">
        <property type="entry name" value="OMP_efflux"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010131">
        <property type="entry name" value="RND_efflux_OM_lipoprot_NodT"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02321">
        <property type="entry name" value="OEP"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01845">
        <property type="entry name" value="outer_NodT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2 4" id="KW-0449">Lipoprotein</keyword>
    <keyword evidence="2" id="KW-0472">Membrane</keyword>
    <keyword evidence="2" id="KW-0564">Palmitate</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="2" id="KW-1134">Transmembrane beta strand</keyword>
    <feature type="region of interest" description="Disordered" evidence="3">
        <location>
            <begin position="570"/>
            <end position="594"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00007613"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="RuleBase" id="RU362097"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="ABX32771.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="594" mass="63800" checksum="25E0705489B09A09" modified="2008-01-15" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2021-06-02" version="62" xmlns="http://uniprot.org/uniprot">
    <accession>A9BQV1</accession>
    <name>A9BQV1_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="7">Inner-membrane translocator</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ordered locus">Daci_0260</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="8" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX32906.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012202199.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_0260"/>
    <dbReference type="EnsemblBacteria" id="ABX32906">
        <property type="protein sequence ID" value="ABX32906"/>
        <property type="gene ID" value="Daci_0260"/>
    </dbReference>
    <dbReference type="GeneID" id="60690664"/>
    <dbReference type="KEGG" id="dac:Daci_0260"/>
    <dbReference type="eggNOG" id="COG0559">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_039929_3_0_4"/>
    <dbReference type="OMA" id="HGAFYMA"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0022857">
        <property type="term" value="F:transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001851">
        <property type="entry name" value="ABC_transp_permease"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02653">
        <property type="entry name" value="BPD_transp_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="5 6" id="KW-0472">Membrane</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 6" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="4 6" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="12"/>
            <end position="32"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="41"/>
            <end position="59"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="65"/>
            <end position="84"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="96"/>
            <end position="114"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="141"/>
            <end position="168"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="189"/>
            <end position="209"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="264"/>
            <end position="283"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="ABX32906.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="287" mass="30364" checksum="A5B0F1A0D7AC7E6B" modified="2008-01-15" version="1">MDVFLQQVLNGLTLGGIYGLVALGLTLVYGILHVPNFAHGGFYMIGAFVAFQAMVAWSWGYWAAMLTAAVAVAVLGIVSERLIFHPLRKASPLHPKIASIGLLLFLEAGAQALWGADFQRMPTPYTSIVEMGGITAPAQRLLIIGAAFALMVALHLFLTRTITGATIIAMAQNREGASMVGIDANRVSMLTFAISGVLAAVAATLYAPINLVYPAMGHLVITKAFVIIILGGMGSIPGAVLGGLIIGFAESFGAYYISTDYKDIIAFVLLVVILSLRPQGLFAKRSH</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="70" xmlns="http://uniprot.org/uniprot">
    <accession>A9BQW1</accession>
    <name>A9BQW1_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Short-chain dehydrogenase/reductase SDR</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Daci_0270</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
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        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="2" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX32916.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012202209.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_0270"/>
    <dbReference type="PRIDE" id="A9BQW1"/>
    <dbReference type="EnsemblBacteria" id="ABX32916">
        <property type="protein sequence ID" value="ABX32916"/>
        <property type="gene ID" value="Daci_0270"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_0270"/>
    <dbReference type="eggNOG" id="COG1028">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_010194_1_3_4"/>
    <dbReference type="OMA" id="SMKGAME"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036291">
        <property type="entry name" value="NAD(P)-bd_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002347">
        <property type="entry name" value="SDR_fam"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00081">
        <property type="entry name" value="GDHRDH"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00080">
        <property type="entry name" value="SDRFAMILY"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51735">
        <property type="entry name" value="SSF51735"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ABX32916.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="263" mass="27326" checksum="AAAA39F57F461DAF" modified="2008-01-15" version="1">MTASPSTASSPAARRIVLITGGSRGLGRNTAGHLARQGLDVVLTYRERADEAQAAVAAIEALGGRAAALQLDVARSAGFADFAARVRQALADTWQADRLDALVHNAGIGINAPFATTTEAQFDELVAIHLKAPFFLSQHLLPLLRDGGSIIHLSSGLTRFTQPGYAAYASMKGGVEVLTRYLARELGARGIRVNTVAPGAIATDFGGGRVRDDAQMGAALASQTALGRVGQPDDIGPVMAALLQPGMGWVQGQRIEASGGMFL</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="49" xmlns="http://uniprot.org/uniprot">
    <accession>A9BR28</accession>
    <name>A9BR28_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">Proton-translocating NAD(P)(+) transhydrogenase</fullName>
            <ecNumber evidence="3">7.1.1.1</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="13" type="ordered locus">Daci_0337</name>
    </gene>
    <organism evidence="13 14">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="13 14" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="14">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="14" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="14">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="2">The transhydrogenation between NADH and NADP is coupled to respiration and ATP hydrolysis and functions as a proton pump across the membrane.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>H(+)(in) + NAD(+) + NADPH = H(+)(out) + NADH + NADP(+)</text>
            <dbReference type="Rhea" id="RHEA:47992"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:57540"/>
            <dbReference type="ChEBI" id="CHEBI:57783"/>
            <dbReference type="ChEBI" id="CHEBI:57945"/>
            <dbReference type="ChEBI" id="CHEBI:58349"/>
            <dbReference type="EC" id="7.1.1.1"/>
        </reaction>
    </comment>
    <dbReference type="EC" id="7.1.1.1" evidence="3"/>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX32983.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012202276.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_0337"/>
    <dbReference type="PRIDE" id="A9BR28"/>
    <dbReference type="EnsemblBacteria" id="ABX32983">
        <property type="protein sequence ID" value="ABX32983"/>
        <property type="gene ID" value="Daci_0337"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_0337"/>
    <dbReference type="eggNOG" id="COG3288">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_137885_2_0_4"/>
    <dbReference type="OMA" id="FVVTDRM"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR024605">
        <property type="entry name" value="NADP_transhyd_a_C"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12769">
        <property type="entry name" value="PNTB_4TM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="9 11" id="KW-0472">Membrane</keyword>
    <keyword evidence="8" id="KW-0520">NAD</keyword>
    <keyword evidence="5" id="KW-0521">NADP</keyword>
    <keyword evidence="14" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="6" id="KW-1278">Translocase</keyword>
    <keyword evidence="4 11" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="7 11" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="11">
        <location>
            <begin position="6"/>
            <end position="26"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="11">
        <location>
            <begin position="38"/>
            <end position="57"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="11">
        <location>
            <begin position="69"/>
            <end position="89"/>
        </location>
    </feature>
    <feature type="domain" description="PNTB_4TM" evidence="12">
        <location>
            <begin position="10"/>
            <end position="94"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="10">
        <location>
            <begin position="94"/>
            <end position="114"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00000006"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00003943"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00012943"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022857"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022967"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00023027"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="12">
        <source>
            <dbReference type="Pfam" id="PF12769"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="13">
        <source>
            <dbReference type="EMBL" id="ABX32983.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="14">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="114" mass="12049" checksum="1C0EC4C76958D99B" modified="2008-01-15" version="1">MEAVSPTIIHLIIFVLAIYVGYHVVWTVTPALHTPLMAVTNAISAIVIVGAMLAAALTETGLGKTMGVLAVALAAVNVFGGFLVTRRMLEMFRKKERKSAPAKDGKDAKAEGQS</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="65" xmlns="http://uniprot.org/uniprot">
    <accession>A9BR55</accession>
    <name>A9BR55_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="4">ParB domain protein nuclease</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ordered locus">Daci_0467</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="5" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX33113.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012202399.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_0467"/>
    <dbReference type="PRIDE" id="A9BR55"/>
    <dbReference type="EnsemblBacteria" id="ABX33113">
        <property type="protein sequence ID" value="ABX33113"/>
        <property type="gene ID" value="Daci_0467"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_0467"/>
    <dbReference type="eggNOG" id="COG1475">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_019174_1_0_4"/>
    <dbReference type="OMA" id="LYEPANR"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003115">
        <property type="entry name" value="ParB/Sulfiredoxin_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036086">
        <property type="entry name" value="ParB/Sulfiredoxin_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02195">
        <property type="entry name" value="ParBc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00470">
        <property type="entry name" value="ParB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF110849">
        <property type="entry name" value="SSF110849"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="ParB" evidence="3">
        <location>
            <begin position="33"/>
            <end position="130"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="426"/>
            <end position="446"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="657"/>
            <end position="687"/>
        </location>
    </feature>
    <feature type="coiled-coil region" evidence="1">
        <location>
            <begin position="330"/>
            <end position="376"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="SMART" id="SM00470"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="ABX33113.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="687" mass="74008" checksum="16E9A68E693AE3A1" modified="2008-01-15" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="59" xmlns="http://uniprot.org/uniprot">
    <accession>A9BRD2</accession>
    <name>A9BRD2_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Diguanylate cyclase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Daci_0544</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="4" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX33190.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012202476.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_0544"/>
    <dbReference type="PRIDE" id="A9BRD2"/>
    <dbReference type="EnsemblBacteria" id="ABX33190">
        <property type="protein sequence ID" value="ABX33190"/>
        <property type="gene ID" value="Daci_0544"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_0544"/>
    <dbReference type="eggNOG" id="COG3706">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_000445_11_1_4"/>
    <dbReference type="OMA" id="YNRRCIM"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd01949">
        <property type="entry name" value="GGDEF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.70.270">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000160">
        <property type="entry name" value="GGDEF_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029787">
        <property type="entry name" value="Nucleotide_cyclase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043128">
        <property type="entry name" value="Rev_trsase/Diguanyl_cyclase"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00990">
        <property type="entry name" value="GGDEF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00267">
        <property type="entry name" value="GGDEF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55073">
        <property type="entry name" value="SSF55073"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00254">
        <property type="entry name" value="GGDEF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50887">
        <property type="entry name" value="GGDEF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="56"/>
            <end position="76"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="82"/>
            <end position="104"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="125"/>
            <end position="149"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="161"/>
            <end position="179"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="191"/>
            <end position="214"/>
        </location>
    </feature>
    <feature type="domain" description="GGDEF" evidence="2">
        <location>
            <begin position="270"/>
            <end position="403"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS50887"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ABX33190.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="414" mass="45371" checksum="DA385B63C1B23BBA" modified="2008-01-15" version="1">MGAHEGRRPAALLRMPVLSSISRNFPDRLLWGPKPASPLVDEALHLERWKRRTWQLHISVLVSHIYALLLFLGHAWAGYAPWAVVLGYGLWVAAGMGFITWAYASDWCHRLRDPGMFLTHQLVSIIGVLGMVMAAPALAFQSMVMLIAFSADGFLARSRTSFWLTWMGTLIAVAAIILWRGPLMRMTTDTAAGQLLAFGVVLGAVVRCSVQATFFRSMQYRLGIANDKLATALAQIEALLRHDDLTGVSNRRGVIERLHEVRTAAHDRGTVLCVALLDIDHFKRINDSFGHEGGDRVLRAFGTLLKSQLRSADGVGRYGGEEFLLVLPDTDLAQAGELLERLRLRIAEAPWTQTLGEGARVTCTLGAAQYRAGESVEATIARADAALYRGKAQGRNCTVLEPQQARPAPSATPA</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="38" xmlns="http://uniprot.org/uniprot">
    <accession>A9BRJ0</accession>
    <name>A9BRJ0_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Daci_0705</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="2" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX33351.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012202637.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_0705"/>
    <dbReference type="PRIDE" id="A9BRJ0"/>
    <dbReference type="EnsemblBacteria" id="ABX33351">
        <property type="protein sequence ID" value="ABX33351"/>
        <property type="gene ID" value="Daci_0705"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_0705"/>
    <dbReference type="eggNOG" id="ENOG502ZF9G">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_1545112_0_0_4"/>
    <dbReference type="OMA" id="MACCTTR"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ABX33351.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="177" mass="19193" checksum="243DB98D4ED6B32B" modified="2008-01-15" version="1">MESTMKPQPIAPLMDAVLRTLGRHSRQDYLRLALHQAGLSDTQLLKIDHAPPYPVTWAETGLGLVLQRLAWGDMPGAPTWGVHSVTLDAQRWKGSWPMGLDPETVTAQEFVSLLAQDPAEALCLPQMACCTTRGFDEQTWALVAVFGGASGALQNLTMSRVGEWVGLSMLPAWQGAG</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="69" xmlns="http://uniprot.org/uniprot">
    <accession>A9BRM3</accession>
    <name>A9BRM3_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Response regulator receiver protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Daci_0738</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="4" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX33384.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012202670.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_0738"/>
    <dbReference type="PRIDE" id="A9BRM3"/>
    <dbReference type="EnsemblBacteria" id="ABX33384">
        <property type="protein sequence ID" value="ABX33384"/>
        <property type="gene ID" value="Daci_0738"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_0738"/>
    <dbReference type="eggNOG" id="COG0745">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_000445_69_17_4"/>
    <dbReference type="OMA" id="DIQMVAQ"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000160">
        <property type="term" value="P:phosphorelay signal transduction system"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011006">
        <property type="entry name" value="CheY-like_superfamily"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001789">
        <property type="entry name" value="Sig_transdc_resp-reg_receiver"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00072">
        <property type="entry name" value="Response_reg"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00448">
        <property type="entry name" value="REC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52172">
        <property type="entry name" value="SSF52172"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50110">
        <property type="entry name" value="RESPONSE_REGULATORY"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0597">Phosphoprotein</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Response regulatory" evidence="2">
        <location>
            <begin position="3"/>
            <end position="120"/>
        </location>
    </feature>
    <feature type="modified residue" description="4-aspartylphosphate" evidence="1">
        <location>
            <position position="52"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00169"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS50110"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ABX33384.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="123" mass="13945" checksum="E16DBAA6FCC7EDC2" modified="2008-01-15" version="1">MQKILIVEDHADIRKLLRMTLEFRDFEVVEACDGDEAWTMAQRLRPDIVLLDIMMPGTINGLEVCSRIKSSYELLHTLVILLTARGSAEDRKAGILAGADEYLVKPFSTLKLLETIESLQRID</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="64" xmlns="http://uniprot.org/uniprot">
    <accession>A9BRP8</accession>
    <name>A9BRP8_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="1">HAD-superfamily hydrolase, subfamily IA, variant 2 (HAD-like)</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Daci_0969</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="2" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX33615.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012202901.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_0969"/>
    <dbReference type="PRIDE" id="A9BRP8"/>
    <dbReference type="EnsemblBacteria" id="ABX33615">
        <property type="protein sequence ID" value="ABX33615"/>
        <property type="gene ID" value="Daci_0969"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_0969"/>
    <dbReference type="eggNOG" id="COG1011">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_114181_0_0_4"/>
    <dbReference type="OMA" id="RLTYGCG"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016787">
        <property type="term" value="F:hydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.150.240">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.1000">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036412">
        <property type="entry name" value="HAD-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006439">
        <property type="entry name" value="HAD-SF_hydro_IA"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041492">
        <property type="entry name" value="HAD_2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023214">
        <property type="entry name" value="HAD_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023198">
        <property type="entry name" value="PGP-like_dom2"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13419">
        <property type="entry name" value="HAD_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00413">
        <property type="entry name" value="HADHALOGNASE"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56784">
        <property type="entry name" value="SSF56784"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01549">
        <property type="entry name" value="HAD-SF-IA-v1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01493">
        <property type="entry name" value="HAD-SF-IA-v2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ABX33615.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="225" mass="24462" checksum="CA4DF890BB0BCD03" modified="2008-01-15" version="1">MNTPAPLTETTAAAWPRAVLFDLLTALLDSWTVWNSAAGSEAAGRDWRAEYLRLTYGCGAYQPYEDLVREAARNRGLPASAADRLEAQWDQLQPWDGARELLAALRPHCRLAVVTNCSERLGQRAAALLGVDWDVVVTSEAAGFYKPDPRPYQLALDRLGLPADQAAFVAGSGYDLFGTSAVGLRTFWHNRVGLSRPTGAPQAEAEAPTLAPALPWLRDFSPQQG</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="48" xmlns="http://uniprot.org/uniprot">
    <accession>A9BRU1</accession>
    <name>A9BRU1_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Putative integral membrane sensor protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Daci_1012</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="4" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX33658.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012202944.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_1012"/>
    <dbReference type="PRIDE" id="A9BRU1"/>
    <dbReference type="EnsemblBacteria" id="ABX33658">
        <property type="protein sequence ID" value="ABX33658"/>
        <property type="gene ID" value="Daci_1012"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_1012"/>
    <dbReference type="eggNOG" id="COG3300">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_061170_0_0_4"/>
    <dbReference type="OMA" id="VMGVAVC"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005330">
        <property type="entry name" value="MHYT_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03707">
        <property type="entry name" value="MHYT"/>
        <property type="match status" value="3"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50924">
        <property type="entry name" value="MHYT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="15"/>
            <end position="37"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="49"/>
            <end position="68"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="88"/>
            <end position="107"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="116"/>
            <end position="137"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="143"/>
            <end position="167"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="179"/>
            <end position="197"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="217"/>
            <end position="242"/>
        </location>
    </feature>
    <feature type="domain" description="MHYT" evidence="2">
        <location>
            <begin position="15"/>
            <end position="203"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00244"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS50924"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ABX33658.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="257" mass="26877" checksum="5B7D5EA3EBABB9E3" modified="2008-01-15" version="1">MNEAVQANEIVETSWRMGLVALSYGIAVLGSFVALTAAQRIRGREGLSWLNLLAAGTALGGIGVWSMHFTGMLALNLGMGSGYSMVETLASLCAAVAATSVALAFVARRPESGARVLGAGTLLGLGVAFMHYLGMYGMRFPGFIVWSVPTVLLSVGIAVAAASAALWLSFRTSSPGMRALAAAVMGAAVCSMHYTGMAAADFVCISEAQRYARPQGFAVISALDLPVFTVIVAIGLAALIGMDQLMQQRDRMRRPLH</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="73" xmlns="http://uniprot.org/uniprot">
    <accession>A9BS20</accession>
    <name>A9BS20_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="8">Monosaccharide-transporting ATPase</fullName>
            <ecNumber evidence="8">3.6.3.17</ecNumber>
        </submittedName>
    </protein>
    <gene>
        <name evidence="8" type="ordered locus">Daci_0784</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="9" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <dbReference type="EC" id="3.6.3.17" evidence="8"/>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX33430.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012202716.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_0784"/>
    <dbReference type="PRIDE" id="A9BS20"/>
    <dbReference type="EnsemblBacteria" id="ABX33430">
        <property type="protein sequence ID" value="ABX33430"/>
        <property type="gene ID" value="Daci_0784"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_0784"/>
    <dbReference type="eggNOG" id="COG1172">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_028880_0_1_4"/>
    <dbReference type="OMA" id="PFAFKMI"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016787">
        <property type="term" value="F:hydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0022857">
        <property type="term" value="F:transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001851">
        <property type="entry name" value="ABC_transp_permease"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02653">
        <property type="entry name" value="BPD_transp_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="8" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="5 7" id="KW-0472">Membrane</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 7" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="4 7" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="12"/>
            <end position="31"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="51"/>
            <end position="76"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="88"/>
            <end position="113"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="119"/>
            <end position="137"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="172"/>
            <end position="192"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="212"/>
            <end position="234"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="255"/>
            <end position="288"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="300"/>
            <end position="319"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="6">
        <location>
            <begin position="322"/>
            <end position="344"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="ABX33430.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="344" mass="34829" checksum="ED63600FAFBD96C6" modified="2008-01-15" version="1">MPEHAHALLHHPVARLGLAIAAMALLFGALAPGFWTLGNWMDVAEGASVTAIMAVGLLVVLVAGGIDISFAATATVAQYLAALAATRLGWAPAASIALGLATGLALGAFNALLIHRLRATSIIITISTLNLYFALLMHGTGGRSIYDLPSWWSDSVVLARFASADGADPVRLTLPIAVAGAAAVLTALLLGHSALGRRLYAFGGNPEAAHRMGIGLGAIQGVAYGWLGMMAAIAGLVQAHRVGESVPNALVGTELFVLAAAVLGGASLFGGTGSVGGVLMGVLLLAVLRNGLNLMGVSPYFFQVLLGAVVLACAAATGLRRTQRRNQQRSTDATPAAPLAGAAP</sequence>
</entry>
<entry dataset="Swiss-Prot" created="2008-09-02" modified="2022-08-03" version="79" xmlns="http://uniprot.org/uniprot">
    <accession>A9BS40</accession>
    <name>MNMA_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">tRNA-specific 2-thiouridylase MnmA</fullName>
            <ecNumber evidence="1">2.8.1.13</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="1" type="primary">mnmA</name>
        <name type="ordered locus">Daci_0804</name>
    </gene>
    <organism>
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference key="1">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain>DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="1">Catalyzes the 2-thiolation of uridine at the wobble position (U34) of tRNA, leading to the formation of s(2)U34.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>AH2 + ATP + S-sulfanyl-L-cysteinyl-[protein] + uridine(34) in tRNA = 2-thiouridine(34) in tRNA + A + AMP + diphosphate + H(+) + L-cysteinyl-[protein]</text>
            <dbReference type="Rhea" id="RHEA:47032"/>
            <dbReference type="Rhea" id="RHEA-COMP:10131"/>
            <dbReference type="Rhea" id="RHEA-COMP:11726"/>
            <dbReference type="Rhea" id="RHEA-COMP:11727"/>
            <dbReference type="Rhea" id="RHEA-COMP:11728"/>
            <dbReference type="ChEBI" id="CHEBI:13193"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:17499"/>
            <dbReference type="ChEBI" id="CHEBI:29950"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:33019"/>
            <dbReference type="ChEBI" id="CHEBI:61963"/>
            <dbReference type="ChEBI" id="CHEBI:65315"/>
            <dbReference type="ChEBI" id="CHEBI:87170"/>
            <dbReference type="ChEBI" id="CHEBI:456215"/>
            <dbReference type="EC" id="2.8.1.13"/>
        </reaction>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="1">Belongs to the MnmA/TRMU family.</text>
    </comment>
    <dbReference type="EC" id="2.8.1.13" evidence="1"/>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX33450.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012202736.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A9BS40"/>
    <dbReference type="SMR" id="A9BS40"/>
    <dbReference type="STRING" id="398578.Daci_0804"/>
    <dbReference type="PRIDE" id="A9BS40"/>
    <dbReference type="EnsemblBacteria" id="ABX33450">
        <property type="protein sequence ID" value="ABX33450"/>
        <property type="gene ID" value="Daci_0804"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_0804"/>
    <dbReference type="eggNOG" id="COG0482">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_035188_1_0_4"/>
    <dbReference type="OMA" id="AVCTGHY"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016783">
        <property type="term" value="F:sulfurtransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000049">
        <property type="term" value="F:tRNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006400">
        <property type="term" value="P:tRNA modification"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd01998">
        <property type="entry name" value="tRNA_Me_trans"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.30.30.280">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.620">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00144">
        <property type="entry name" value="tRNA_thiouridyl_MnmA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023382">
        <property type="entry name" value="Adenine_a_hdrlase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014729">
        <property type="entry name" value="Rossmann-like_a/b/a_fold"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004506">
        <property type="entry name" value="tRNA-specific_2-thiouridylase"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00420">
        <property type="entry name" value="trmU"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword id="KW-0067">ATP-binding</keyword>
    <keyword id="KW-0963">Cytoplasm</keyword>
    <keyword id="KW-1015">Disulfide bond</keyword>
    <keyword id="KW-0547">Nucleotide-binding</keyword>
    <keyword id="KW-1185">Reference proteome</keyword>
    <keyword id="KW-0694">RNA-binding</keyword>
    <keyword id="KW-0808">Transferase</keyword>
    <keyword id="KW-0819">tRNA processing</keyword>
    <keyword id="KW-0820">tRNA-binding</keyword>
    <feature type="chain" id="PRO_0000349610" description="tRNA-specific 2-thiouridylase MnmA">
        <location>
            <begin position="1"/>
            <end position="372"/>
        </location>
    </feature>
    <feature type="region of interest" description="Interaction with target base in tRNA" evidence="1">
        <location>
            <begin position="95"/>
            <end position="97"/>
        </location>
    </feature>
    <feature type="region of interest" description="Interaction with tRNA" evidence="1">
        <location>
            <begin position="148"/>
            <end position="150"/>
        </location>
    </feature>
    <feature type="region of interest" description="Interaction with tRNA" evidence="1">
        <location>
            <begin position="317"/>
            <end position="318"/>
        </location>
    </feature>
    <feature type="active site" description="Nucleophile" evidence="1">
        <location>
            <position position="100"/>
        </location>
    </feature>
    <feature type="active site" description="Cysteine persulfide intermediate" evidence="1">
        <location>
            <position position="198"/>
        </location>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <begin position="9"/>
            <end position="16"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <position position="35"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <position position="124"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <feature type="site" description="Interaction with tRNA" evidence="1">
        <location>
            <position position="125"/>
        </location>
    </feature>
    <feature type="site" description="Interaction with tRNA" evidence="1">
        <location>
            <position position="350"/>
        </location>
    </feature>
    <feature type="disulfide bond" description="Alternate" evidence="1">
        <location>
            <begin position="100"/>
            <end position="198"/>
        </location>
    </feature>
    <evidence type="ECO:0000255" key="1">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00144"/>
        </source>
    </evidence>
    <sequence length="372" mass="41049" checksum="3A0084FB2CDE6ACC" modified="2008-01-15" version="1">MTKHRVVVGLSGGVDSAVTAHLLKQQGHEVVGIFMKNWEDDDDSEYCSSNVDFVDAAAVADVVGIEIEHVNFASEYKDRVFAEFLREYQAGRTPNPDVLCNAEIKFKAFLDHAMRLGAEKIATGHYARVRQNPDTQLFELLKGLDPAKDQSYFLHRLNQAQLSRSMFPVGELKKTEVRRIAEEIGLPNAKKKDSTGICFIGERPFRDFLNRYISKEPGNILDDRNRKLGKHVGLSFYTLGQRSGLGIGGVKEKGAPRGGGDHDPWFVARKELDTNTLRVVQGHDHPWLLSQSLLADQVSWVAGHAPAEGKAYGSKTRYRQPDSPALISGATPEGFRLDFPEPQWAVTPGQSAVLYDGDVCLGGGIIAAVDPH</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="71" xmlns="http://uniprot.org/uniprot">
    <accession>A9BS92</accession>
    <name>A9BS92_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="6">Ribosomal RNA small subunit methyltransferase I</fullName>
            <ecNumber evidence="6">2.1.1.198</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="6">16S rRNA 2'-O-ribose C1402 methyltransferase</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="6">rRNA (cytidine-2'-O-)-methyltransferase RsmI</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="6" type="primary">rsmI</name>
        <name evidence="8" type="ordered locus">Daci_1061</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="9" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="6">Catalyzes the 2'-O-methylation of the ribose of cytidine 1402 (C1402) in 16S rRNA.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="6">
            <text>cytidine(1402) in 16S rRNA + S-adenosyl-L-methionine = 2'-O-methylcytidine(1402) in 16S rRNA + H(+) + S-adenosyl-L-homocysteine</text>
            <dbReference type="Rhea" id="RHEA:42924"/>
            <dbReference type="Rhea" id="RHEA-COMP:10285"/>
            <dbReference type="Rhea" id="RHEA-COMP:10286"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:57856"/>
            <dbReference type="ChEBI" id="CHEBI:59789"/>
            <dbReference type="ChEBI" id="CHEBI:74495"/>
            <dbReference type="ChEBI" id="CHEBI:82748"/>
            <dbReference type="EC" id="2.1.1.198"/>
        </reaction>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="6">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="6">Belongs to the methyltransferase superfamily. RsmI family.</text>
    </comment>
    <dbReference type="EC" id="2.1.1.198" evidence="6"/>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX33706.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012202992.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_1061"/>
    <dbReference type="PRIDE" id="A9BS92"/>
    <dbReference type="EnsemblBacteria" id="ABX33706">
        <property type="protein sequence ID" value="ABX33706"/>
        <property type="gene ID" value="Daci_1061"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_1061"/>
    <dbReference type="eggNOG" id="COG0313">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_044779_2_0_4"/>
    <dbReference type="OMA" id="RTMVFFE"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0070677">
        <property type="term" value="F:rRNA (cytosine-2'-O-)-methyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000453">
        <property type="term" value="P:enzyme-directed rRNA 2'-O-methylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd11648">
        <property type="entry name" value="RsmI"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.950.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.1010.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01877">
        <property type="entry name" value="16SrRNA_methyltr_I"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000878">
        <property type="entry name" value="4pyrrol_Mease"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035996">
        <property type="entry name" value="4pyrrol_Methylase_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014777">
        <property type="entry name" value="4pyrrole_Mease_sub1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014776">
        <property type="entry name" value="4pyrrole_Mease_sub2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008189">
        <property type="entry name" value="rRNA_ssu_MeTfrase_I"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018063">
        <property type="entry name" value="SAM_MeTrfase_RsmI_CS"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46111">
        <property type="entry name" value="PTHR46111"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00590">
        <property type="entry name" value="TP_methylase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF005917">
        <property type="entry name" value="MTase_YraL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53790">
        <property type="entry name" value="SSF53790"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00096">
        <property type="entry name" value="TIGR00096"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01296">
        <property type="entry name" value="RSMI"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="1 6" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="3 6 8" id="KW-0489">Methyltransferase</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 6" id="KW-0698">rRNA processing</keyword>
    <keyword evidence="5 6" id="KW-0949">S-adenosyl-L-methionine</keyword>
    <keyword evidence="4 6 8" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="TP_methylase" evidence="7">
        <location>
            <begin position="26"/>
            <end position="231"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022490"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022552"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022603"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022691"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01877"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="Pfam" id="PF00590"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="ABX33706.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="313" mass="32615" checksum="5694E450C0C326D1" modified="2008-01-15" version="1">MTTSFATALGAAKDAAASQHYPQGALYVVATPIGNLADISLRALHVLQLVDCVACEDTRHTQGLLRSYGLDRPGSQLLAVHQHNEAEAAQQIVARLQQGQRIAYVSDAGTPGVSDPGARLCAAVQAAGLRCIPLPGASSITAAISVAGAVTPSQGEGGFVFAGFLPTKSAERLAAVQQLALQPRCTVLLEAPHRIADLAAALATLGERPVTLAREITKQFEDIATMPASALPAWLQAVPQRSKGEFAVVLHPVALGGDEADADALRVLRLLLAELPTKTAVRLAAEITGAPRNRLYDAALAIKQAAEEDPIED</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="70" xmlns="http://uniprot.org/uniprot">
    <accession>A9BSA4</accession>
    <name>A9BSA4_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">Acetyl-CoA carboxylase</fullName>
            <ecNumber evidence="3">6.4.1.2</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="16" type="ordered locus">Daci_1073</name>
    </gene>
    <organism evidence="16 17">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="16 17" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="17">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="17" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="17">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>biotin</name>
            <dbReference type="ChEBI" id="CHEBI:57586"/>
        </cofactor>
    </comment>
    <comment type="pathway">
        <text evidence="2">Lipid metabolism; malonyl-CoA biosynthesis; malonyl-CoA from acetyl-CoA: step 1/1.</text>
    </comment>
    <dbReference type="EC" id="6.4.1.2" evidence="3"/>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX33718.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012203004.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_1073"/>
    <dbReference type="PRIDE" id="A9BSA4"/>
    <dbReference type="EnsemblBacteria" id="ABX33718">
        <property type="protein sequence ID" value="ABX33718"/>
        <property type="gene ID" value="Daci_1073"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_1073"/>
    <dbReference type="eggNOG" id="COG0439">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="eggNOG" id="COG4799">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_009218_0_0_4"/>
    <dbReference type="OMA" id="GTQGMRN"/>
    <dbReference type="UniPathway" id="UPA00655">
        <property type="reaction ID" value="UER00711"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003989">
        <property type="term" value="F:acetyl-CoA carboxylase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
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        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
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        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
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        <property type="term" value="P:malonyl-CoA biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniPathway"/>
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        <property type="match status" value="1"/>
    </dbReference>
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        <property type="entry name" value="AcCoA_carboxyl"/>
    </dbReference>
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        <property type="entry name" value="ATP-grasp"/>
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        <property type="entry name" value="ATP_grasp_subdomain_1"/>
    </dbReference>
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        <property type="entry name" value="BC-like_N"/>
    </dbReference>
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        <property type="entry name" value="Biotin_COase_C"/>
    </dbReference>
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        <property type="entry name" value="Biotin_lipoyl"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005479">
        <property type="entry name" value="CbamoylP_synth_lsu-like_ATP-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029045">
        <property type="entry name" value="ClpP/crotonase-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011763">
        <property type="entry name" value="COA_CT_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011762">
        <property type="entry name" value="COA_CT_N"/>
    </dbReference>
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        <property type="entry name" value="PreATP-grasp_dom_sf"/>
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    </dbReference>
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        <property type="entry name" value="Single_hybrid_motif"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02785">
        <property type="entry name" value="Biotin_carb_C"/>
        <property type="match status" value="1"/>
    </dbReference>
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        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00364">
        <property type="entry name" value="Biotin_lipoyl"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01039">
        <property type="entry name" value="Carboxyl_trans"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02786">
        <property type="entry name" value="CPSase_L_D2"/>
        <property type="match status" value="1"/>
    </dbReference>
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    </dbReference>
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        <property type="entry name" value="SSF51246"/>
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        <property type="entry name" value="SSF52096"/>
        <property type="match status" value="2"/>
    </dbReference>
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        <property type="entry name" value="BC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50968">
        <property type="entry name" value="BIOTINYL_LIPOYL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50989">
        <property type="entry name" value="COA_CT_CTER"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50980">
        <property type="entry name" value="COA_CT_NTER"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00867">
        <property type="entry name" value="CPSASE_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="7 10 16" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="8" id="KW-0092">Biotin</keyword>
    <keyword evidence="4" id="KW-0436">Ligase</keyword>
    <keyword evidence="9" id="KW-0511">Multifunctional enzyme</keyword>
    <keyword evidence="5 10" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="6" id="KW-0658">Purine biosynthesis</keyword>
    <keyword evidence="17" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Biotin carboxylation" evidence="13">
        <location>
            <begin position="1"/>
            <end position="459"/>
        </location>
    </feature>
    <feature type="domain" description="ATP-grasp" evidence="12">
        <location>
            <begin position="119"/>
            <end position="322"/>
        </location>
    </feature>
    <feature type="domain" description="Lipoyl-binding" evidence="11">
        <location>
            <begin position="487"/>
            <end position="563"/>
        </location>
    </feature>
    <feature type="domain" description="CoA carboxyltransferase N-terminal" evidence="14">
        <location>
            <begin position="581"/>
            <end position="850"/>
        </location>
    </feature>
    <feature type="domain" description="CoA carboxyltransferase C-terminal" evidence="15">
        <location>
            <begin position="844"/>
            <end position="1091"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001953"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00004956"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00013058"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022598"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022755"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00023267"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00023268"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00409"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="11">
        <source>
            <dbReference type="PROSITE" id="PS50968"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="12">
        <source>
            <dbReference type="PROSITE" id="PS50975"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="13">
        <source>
            <dbReference type="PROSITE" id="PS50979"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="14">
        <source>
            <dbReference type="PROSITE" id="PS50980"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="15">
        <source>
            <dbReference type="PROSITE" id="PS50989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="16">
        <source>
            <dbReference type="EMBL" id="ABX33718.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="17">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="1097" mass="115553" checksum="CC6DED6B3F9BD43A" modified="2008-01-15" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="74" xmlns="http://uniprot.org/uniprot">
    <accession>A9BSC7</accession>
    <name>A9BSC7_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="8">Carbamoyl-phosphate synthase L chain ATP-binding</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="8" type="ordered locus">Daci_1096</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="9" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX33741.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012203027.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_1096"/>
    <dbReference type="PRIDE" id="A9BSC7"/>
    <dbReference type="EnsemblBacteria" id="ABX33741">
        <property type="protein sequence ID" value="ABX33741"/>
        <property type="gene ID" value="Daci_1096"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_1096"/>
    <dbReference type="eggNOG" id="COG0439">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_000395_3_2_4"/>
    <dbReference type="OMA" id="RVETGYA"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
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        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016874">
        <property type="term" value="F:ligase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006164">
        <property type="term" value="P:purine nucleotide biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011761">
        <property type="entry name" value="ATP-grasp"/>
    </dbReference>
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        <property type="entry name" value="BC-like_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011764">
        <property type="entry name" value="Biotin_carboxylation_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005482">
        <property type="entry name" value="Biotin_COase_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005479">
        <property type="entry name" value="CbamoylP_synth_lsu-like_ATP-bd"/>
    </dbReference>
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        <property type="entry name" value="PreATP-grasp_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011054">
        <property type="entry name" value="Rudment_hybrid_motif"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02785">
        <property type="entry name" value="Biotin_carb_C"/>
        <property type="match status" value="1"/>
    </dbReference>
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        <property type="entry name" value="Biotin_carb_N"/>
        <property type="match status" value="1"/>
    </dbReference>
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        <property type="entry name" value="CPSase_L_D2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00878">
        <property type="entry name" value="Biotin_carb_C"/>
        <property type="match status" value="1"/>
    </dbReference>
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        <property type="entry name" value="SSF51246"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52440">
        <property type="entry name" value="SSF52440"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50975">
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        <property type="match status" value="1"/>
    </dbReference>
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        <property type="match status" value="1"/>
    </dbReference>
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        <property type="entry name" value="CPSASE_1"/>
        <property type="match status" value="1"/>
    </dbReference>
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        <property type="entry name" value="CPSASE_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
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    <keyword evidence="3" id="KW-0658">Purine biosynthesis</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Biotin carboxylation" evidence="7">
        <location>
            <begin position="7"/>
            <end position="451"/>
        </location>
    </feature>
    <feature type="domain" description="ATP-grasp" evidence="6">
        <location>
            <begin position="126"/>
            <end position="322"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022598"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022755"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00409"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="PROSITE" id="PS50975"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="PROSITE" id="PS50979"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="ABX33741.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="453" mass="49189" checksum="DFD5371FA0207A6C" modified="2008-01-15" version="1">MSGAPHPIRRVLVANRGAVAARVIRTLRRMGLESVAVYSEADAGLPYVRAADQSVCIGPAPAAQSYLDQARLLQVARETGADAVHPGYGFLSENADFAEAVQRQGLCFIGPSPHWIRTLGHKTQARAFMAAQGMPQAASSAVLHSVQEAQAEAARIGFPVLVKPAGGGGGIGMLPAHDAPQLEAAWSKASGIAAKYFGTAELYLEKLIEAPRHIEFQVLADRHGEVRVLFERDCSVQRRHQKVVEEARPAGIPAQALADMRQLLAGLLARTGYDVIGTVEMLYTPQHGFVFLEMNTRLQVEHAVTEEITGIDIVEAQIRLAAGERMREVLPAEPVARGHAIEARIYAEDPVRFLPSPGRLDRFEMPQGEGLRVETGYAQGCSVTPFYDPMVAKLVAHGSDRTQAIARLRQALAQTRIEGVKTNIPFIERILGHADFLDLRIDTGIAQRVLAHL</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="63" xmlns="http://uniprot.org/uniprot">
    <accession>A9BSH8</accession>
    <name>A9BSH8_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Cyclopropane-fatty-acyl-phospholipid synthase</fullName>
            <ecNumber evidence="3">2.1.1.79</ecNumber>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Daci_1147</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="4" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the CFA/CMAS family.</text>
    </comment>
    <dbReference type="EC" id="2.1.1.79" evidence="3"/>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX33792.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012203078.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_1147"/>
    <dbReference type="PRIDE" id="A9BSH8"/>
    <dbReference type="EnsemblBacteria" id="ABX33792">
        <property type="protein sequence ID" value="ABX33792"/>
        <property type="gene ID" value="Daci_1147"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_1147"/>
    <dbReference type="eggNOG" id="COG2230">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_026434_6_2_4"/>
    <dbReference type="OMA" id="QAEWAQK"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008825">
        <property type="term" value="F:cyclopropane-fatty-acyl-phospholipid synthase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008610">
        <property type="term" value="P:lipid biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0032259">
        <property type="term" value="P:methylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.150">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003333">
        <property type="entry name" value="Mycolic_cyclopropane_synthase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029063">
        <property type="entry name" value="SAM-dependent_MTases_sf"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF003085">
        <property type="entry name" value="CMAS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53335">
        <property type="entry name" value="SSF53335"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-0489">Methyltransferase</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0808">Transferase</keyword>
    <feature type="active site" evidence="2">
        <location>
            <position position="398"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00010815"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="PIRSR" id="PIRSR003085-1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ABX33792.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="442" mass="48966" checksum="14A248DC63250667" modified="2008-01-15" version="1">MPRHAQPRLRLTQCALLSKMNAMTQVLSSIEARLASLPVPVAVILPSGQRAGPADAQVVLHFQTMSAIASLAAGQIGTLGSAIVEGLVHIDGRMRDVMAVAASLLQSDPVRGTSHWWGHAMARMRSMAAHTLARDAQQIQFHYDISDDFYGLWLDPRRVYSCAYFRDPQMTLAQAQEAKLDHICRKLDLRPGERFLDIGAGWGALLVWAAEHYGVTATGITLSHNQHRYVQQLIAERGLQGKVDMQLLDYRALAPGQPFDKIGSVGMFEHVGQAKLPEYFQTVHRLLRPGGMALIHGITAGGVDNTELGAGMGEFIDRYIFPGGELMHVSRVLHDMGHSGLEMVDTENLRPHYARTLWNWSDALEARLPQAQRILEQHADAEGAAKVLRAYRLYLAGCAMGFERGWIALHQMLCTHPDGLLQSGPMVGAQSDYAFNREYMYR</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2020-10-07" version="37" xmlns="http://uniprot.org/uniprot">
    <accession>A9BSR6</accession>
    <name>A9BSR6_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Daci_1427</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="2" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX34071.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="ABX34071">
        <property type="protein sequence ID" value="ABX34071"/>
        <property type="gene ID" value="Daci_1427"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_1427"/>
    <dbReference type="HOGENOM" id="CLU_2034248_0_0_4"/>
    <dbReference type="OMA" id="ECAFRID"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ABX34071.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="121" mass="14044" checksum="C842E86D470F0B50" modified="2008-01-15" version="1">MSNGFKKIEGLLSGLNILKENPFSRTIFYFDVSGKRLEGNLSDFNEYFESGLINGVQFWIDESCDVYVGWKECDYGAEFEFYLNGLDDDDVFSILSELTKFIWINYRASYNEGRFFSIGII</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-05-25" version="92" xmlns="http://uniprot.org/uniprot">
    <accession>A9BST7</accession>
    <name>A9BST7_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Transcriptional regulator, AraC family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_1448</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX34092.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_1448"/>
    <dbReference type="EnsemblBacteria" id="ABX34092">
        <property type="protein sequence ID" value="ABX34092"/>
        <property type="gene ID" value="Daci_1448"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_1448"/>
    <dbReference type="eggNOG" id="COG2207">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_000445_87_0_4"/>
    <dbReference type="OMA" id="QFRREFC"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003700">
        <property type="term" value="F:DNA-binding transcription factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043565">
        <property type="term" value="F:sequence-specific DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003313">
        <property type="entry name" value="AraC-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009057">
        <property type="entry name" value="Homeobox-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018060">
        <property type="entry name" value="HTH_AraC"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011051">
        <property type="entry name" value="RmlC_Cupin_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020449">
        <property type="entry name" value="Tscrpt_reg_HTH_AraC-type"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02311">
        <property type="entry name" value="AraC_binding"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12833">
        <property type="entry name" value="HTH_18"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00032">
        <property type="entry name" value="HTHARAC"/>
    </dbReference>
    <dbReference type="SMART" id="SM00342">
        <property type="entry name" value="HTH_ARAC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46689">
        <property type="entry name" value="SSF46689"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51182">
        <property type="entry name" value="SSF51182"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01124">
        <property type="entry name" value="HTH_ARAC_FAMILY_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HTH araC/xylS-type" evidence="1">
        <location>
            <begin position="155"/>
            <end position="252"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS01124"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX34092.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="257" mass="28856" checksum="7C1769266A8F52A3" modified="2008-01-15" version="1">MHIQNVEDVPGEYYFRYDEFGADTEVPPHSHSWGHLNYTPHGSMCMDTAGQHWVSPPQYGVWVPPGVVHSCHVAHAVVYRSVYLAPALCRELPAQPCSMRIGAIVKAILADFAVRDVHIPATDADLRLARVLYDQLRAVPVEPGYLPAAEHPALVEVLTRMRAAPEDHRSLAQWAASVHMTERTLARHCQRELGMGLGEWRQRMRYLLAIDALEAGLSVQQIAYDLGYSTPSAFIAMFQREAGTSPEQFRREFCMPP</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2021-09-29" version="62" xmlns="http://uniprot.org/uniprot">
    <accession>A9BSV0</accession>
    <name>A9BSV0_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="6">Lysine exporter protein (LYSE/YGGA)</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ordered locus">Daci_1667</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="7" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX34310.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012203595.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_1667"/>
    <dbReference type="EnsemblBacteria" id="ABX34310">
        <property type="protein sequence ID" value="ABX34310"/>
        <property type="gene ID" value="Daci_1667"/>
    </dbReference>
    <dbReference type="GeneID" id="60686156"/>
    <dbReference type="KEGG" id="dac:Daci_1667"/>
    <dbReference type="eggNOG" id="COG1280">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_079569_2_1_4"/>
    <dbReference type="OMA" id="PQFINPH"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006865">
        <property type="term" value="P:amino acid transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001123">
        <property type="entry name" value="LeuE-type"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30086">
        <property type="entry name" value="PTHR30086"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01810">
        <property type="entry name" value="LysE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF006324">
        <property type="entry name" value="LeuE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="4 5" id="KW-0472">Membrane</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 5" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="3 5" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="6"/>
            <end position="29"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="41"/>
            <end position="64"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="113"/>
            <end position="138"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="144"/>
            <end position="168"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="189"/>
            <end position="208"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="ABX34310.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="209" mass="22475" checksum="96EAD6C6235F4513" modified="2008-01-15" version="1">MDWHTWIAYFVACWIIAVSPGSGAVLSMSHGLSYGVRKSSATIFGLQLGLLTILLIAGAGVGSLLLASEWAFNAVKIVGACYLIYLGISQWRSGAAPLATQESMPELSVRRRVLTGFLTNATNPKGIIFMVAVLPQFMTTSRPLWLQLLILAATMLAVDTMVMHGYAASASALRGFMRSARAVRSQNRVFGALLMAVGTGLFFVQRASR</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="56" xmlns="http://uniprot.org/uniprot">
    <accession>A9BSY1</accession>
    <name>A9BSY1_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">HTH cro/C1-type domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_1698</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX34341.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012203626.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="PRIDE" id="A9BSY1"/>
    <dbReference type="EnsemblBacteria" id="ABX34341">
        <property type="protein sequence ID" value="ABX34341"/>
        <property type="gene ID" value="Daci_1698"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_1698"/>
    <dbReference type="eggNOG" id="ENOG5033Q5S">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_083310_0_0_4"/>
    <dbReference type="OMA" id="YEEWINI"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd00093">
        <property type="entry name" value="HTH_XRE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.260.40">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001387">
        <property type="entry name" value="Cro/C1-type_HTH"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010982">
        <property type="entry name" value="Lambda_DNA-bd_dom_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01381">
        <property type="entry name" value="HTH_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47413">
        <property type="entry name" value="SSF47413"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50943">
        <property type="entry name" value="HTH_CROC1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HTH cro/C1-type" evidence="1">
        <location>
            <begin position="17"/>
            <end position="62"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS50943"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX34341.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="318" mass="36393" checksum="4EDB2A62E5240C0C" modified="2008-01-15" version="1">MTTPSLIQLTLDTLRCTQRDLAAKLGVSPAQVSKWKKGEYMSIEMSQRLRALTGIGDIDPDFILLAGTMEDAKKWQLLIRHLADTAVHSAETGYETVPLTEDIQEDSCPIFFDTLKALQDMGIEIPSQYPEELDINFQNDEQEELIYKNNIVFIINEIFNSLNNVYGFYSAFVSGIIYDEDLDLIDTPVWELENDMLRLAASKIEIDKDLTPEFIRFKWTIETEVAKKLSLLKEYAFKSCIPLKAELLDLAYASHDELGREADAHSLGFTRNKIHPDIYLNELLTGMRVIHQVLPVIMKKLDIYEDFKIDTSELSAER</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="62" xmlns="http://uniprot.org/uniprot">
    <accession>A9BTE8</accession>
    <name>A9BTE8_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Transcriptional regulator, XRE family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_2276</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX34916.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_2276"/>
    <dbReference type="PRIDE" id="A9BTE8"/>
    <dbReference type="EnsemblBacteria" id="ABX34916">
        <property type="protein sequence ID" value="ABX34916"/>
        <property type="gene ID" value="Daci_2276"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_2276"/>
    <dbReference type="eggNOG" id="COG1396">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_1459050_0_0_4"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd00093">
        <property type="entry name" value="HTH_XRE"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.260.40">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001387">
        <property type="entry name" value="Cro/C1-type_HTH"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010982">
        <property type="entry name" value="Lambda_DNA-bd_dom_sf"/>
    </dbReference>
    <dbReference type="SMART" id="SM00530">
        <property type="entry name" value="HTH_XRE"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47413">
        <property type="entry name" value="SSF47413"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50943">
        <property type="entry name" value="HTH_CROC1"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HTH cro/C1-type" evidence="1">
        <location>
            <begin position="29"/>
            <end position="82"/>
        </location>
    </feature>
    <feature type="domain" description="HTH cro/C1-type" evidence="1">
        <location>
            <begin position="107"/>
            <end position="160"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS50943"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX34916.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="214" mass="22770" checksum="7FF7C96EE18CACD9" modified="2008-01-15" version="1">MLQDAVDFAQFFGKVNRFTKKMDEFSQRLREERKRLGLSQEAFASLGGVSKNTQSNYETGANLPDVGYLNTIRGFGVDSGYVLTGIRTFDPSAIEHAQPAATLAARLVQERKRLELTVGQLAAKSGVDRLALLKFEEGEFAPDAKALQQLHAVGVDVGYVLLSLRAGAAGGDVGVAGAVSADIEVLMQHYGKATAEGQAAIRTVASLAAQAARV</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="43" xmlns="http://uniprot.org/uniprot">
    <accession>A9BTK0</accession>
    <name>A9BTK0_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Daci_2330</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="2" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX34968.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012204250.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="PRIDE" id="A9BTK0"/>
    <dbReference type="EnsemblBacteria" id="ABX34968">
        <property type="protein sequence ID" value="ABX34968"/>
        <property type="gene ID" value="Daci_2330"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_2330"/>
    <dbReference type="eggNOG" id="ENOG5033F08">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_173780_0_0_4"/>
    <dbReference type="OMA" id="WTHRFEA"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ABX34968.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="102" mass="11588" checksum="9DF2E2668CDD8738" modified="2008-01-15" version="1">MPESELLAIAAHLHVLLRRSCGRVTDTEWLAANAEYAAEIIRFAREQEGTRSTPELVDWTHRFEAAWNAALAGPAERSPLMQRAGELMRQRAENRKYVGTLR</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="61" xmlns="http://uniprot.org/uniprot">
    <accession>A9BTM7</accession>
    <name>A9BTM7_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Putative phosphatase or phosphodiesterase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Daci_2357</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="4" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX34995.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012204277.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_2357"/>
    <dbReference type="PRIDE" id="A9BTM7"/>
    <dbReference type="EnsemblBacteria" id="ABX34995">
        <property type="protein sequence ID" value="ABX34995"/>
        <property type="gene ID" value="Daci_2357"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_2357"/>
    <dbReference type="eggNOG" id="COG3540">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_525464_0_0_4"/>
    <dbReference type="OMA" id="DHEVRNN"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.60.21.70">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029052">
        <property type="entry name" value="Metallo-depent_PP-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018946">
        <property type="entry name" value="PhoD-like_MPP"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038607">
        <property type="entry name" value="PhoD-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR032093">
        <property type="entry name" value="PhoD_N"/>
    </dbReference>
    <dbReference type="Pfam" id="PF09423">
        <property type="entry name" value="PhoD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF16655">
        <property type="entry name" value="PhoD_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56300">
        <property type="entry name" value="SSF56300"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="PhoD_N" evidence="2">
        <location>
            <begin position="42"/>
            <end position="133"/>
        </location>
    </feature>
    <feature type="domain" description="PhoD" evidence="1">
        <location>
            <begin position="156"/>
            <end position="508"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF09423"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF16655"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ABX34995.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="528" mass="58307" checksum="525BDC18AD472F87" modified="2008-01-15" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="55" xmlns="http://uniprot.org/uniprot">
    <accession>A9BU00</accession>
    <name>A9BU00_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="4">Beta_helix domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="5" type="ordered locus">Daci_3077</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="6" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX35715.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_3077"/>
    <dbReference type="PRIDE" id="A9BU00"/>
    <dbReference type="EnsemblBacteria" id="ABX35715">
        <property type="protein sequence ID" value="ABX35715"/>
        <property type="gene ID" value="Daci_3077"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_3077"/>
    <dbReference type="eggNOG" id="COG1345">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="eggNOG" id="COG3210">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_368712_0_0_4"/>
    <dbReference type="OMA" id="VANESMR"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005509">
        <property type="term" value="F:calcium ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.160.20.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR039448">
        <property type="entry name" value="Beta_helix"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015919">
        <property type="entry name" value="Cadherin-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR026457">
        <property type="entry name" value="CSLREA_Nterm"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012334">
        <property type="entry name" value="Pectin_lyas_fold"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011050">
        <property type="entry name" value="Pectin_lyase_fold/virulence"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13229">
        <property type="entry name" value="Beta_helix"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF49313">
        <property type="entry name" value="SSF49313"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51126">
        <property type="entry name" value="SSF51126"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR04214">
        <property type="entry name" value="CSLREA_Nterm"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0472">Membrane</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0732">Signal</keyword>
    <keyword evidence="2" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="2" id="KW-1133">Transmembrane helix</keyword>
    <feature type="signal peptide" evidence="3">
        <location>
            <begin position="1"/>
            <end position="37"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5002733076" description="Beta_helix domain-containing protein" evidence="3">
        <location>
            <begin position="38"/>
            <end position="755"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="729"/>
            <end position="746"/>
        </location>
    </feature>
    <feature type="domain" description="Beta_helix" evidence="4">
        <location>
            <begin position="285"/>
            <end position="424"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="697"/>
            <end position="727"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Pro residues" evidence="1">
        <location>
            <begin position="702"/>
            <end position="716"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="Pfam" id="PF13229"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="ABX35715.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="755" mass="76269" checksum="7A749DA77E536ECD" modified="2008-01-15" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="74" xmlns="http://uniprot.org/uniprot">
    <accession>A9BU70</accession>
    <name>A9BU70_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="7">TonB-dependent receptor</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ordered locus">Daci_3147</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="8" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="4">Cell outer membrane</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="4">Belongs to the TonB-dependent receptor family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX35785.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_3147"/>
    <dbReference type="PRIDE" id="A9BU70"/>
    <dbReference type="EnsemblBacteria" id="ABX35785">
        <property type="protein sequence ID" value="ABX35785"/>
        <property type="gene ID" value="Daci_3147"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_3147"/>
    <dbReference type="eggNOG" id="COG4771">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_008287_15_2_4"/>
    <dbReference type="OMA" id="INLDGHY"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009279">
        <property type="term" value="C:cell outer membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015891">
        <property type="term" value="P:siderophore transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.170.20">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR039426">
        <property type="entry name" value="BtuB-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012910">
        <property type="entry name" value="Plug_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000531">
        <property type="entry name" value="TonB-dep_rcpt_b-brl"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036942">
        <property type="entry name" value="TonB_rcpt_b-brl_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR030150">
        <property type="entry name" value="ViuA"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30069">
        <property type="entry name" value="PTHR30069"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30069:SF37">
        <property type="entry name" value="PTHR30069:SF37"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07715">
        <property type="entry name" value="Plug"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00593">
        <property type="entry name" value="TonB_dep_Rec"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-0998">Cell outer membrane</keyword>
    <keyword evidence="2 4" id="KW-0472">Membrane</keyword>
    <keyword evidence="7" id="KW-0675">Receptor</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1 4" id="KW-0798">TonB box</keyword>
    <feature type="domain" description="Plug" evidence="6">
        <location>
            <begin position="73"/>
            <end position="188"/>
        </location>
    </feature>
    <feature type="domain" description="TonB_dep_Rec" evidence="5">
        <location>
            <begin position="280"/>
            <end position="708"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023077"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023237"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="RuleBase" id="RU003357"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="Pfam" id="PF00593"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="Pfam" id="PF07715"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="ABX35785.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="711" mass="78223" checksum="72DB80F9E8461626" modified="2008-01-15" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="50" xmlns="http://uniprot.org/uniprot">
    <accession>A9BU78</accession>
    <name>A9BU78_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">HNH endonuclease</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_3155</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX35793.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_3155"/>
    <dbReference type="REBASE" id="16641">
        <property type="entry name" value="DacSPHMcrAP"/>
    </dbReference>
    <dbReference type="PRIDE" id="A9BU78"/>
    <dbReference type="EnsemblBacteria" id="ABX35793">
        <property type="protein sequence ID" value="ABX35793"/>
        <property type="gene ID" value="Daci_3155"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_3155"/>
    <dbReference type="eggNOG" id="COG1403">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_072764_0_0_4"/>
    <dbReference type="OMA" id="HRELHYG"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004519">
        <property type="term" value="F:endonuclease activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003676">
        <property type="term" value="F:nucleic acid binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd00085">
        <property type="entry name" value="HNHc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002711">
        <property type="entry name" value="HNH"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003615">
        <property type="entry name" value="HNH_nuc"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01844">
        <property type="entry name" value="HNH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00507">
        <property type="entry name" value="HNHc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0255">Endonuclease</keyword>
    <keyword evidence="2" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="2" id="KW-0540">Nuclease</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HNHc" evidence="1">
        <location>
            <begin position="246"/>
            <end position="305"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="SMART" id="SM00507"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX35793.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="330" mass="37461" checksum="C9E15EC627D513A1" modified="2008-01-15" version="1">MDDKYKVFEDDEAGYHAWLAHNPNGFVLNTDRPPRAEYMPLHTARCSTIKIPATHARPDPFTSRGYMKVCANDPNDLLAWMQTKGANEFSKLCSKCRVAEFMTGSAGDSWTNDELRSSVEAYLEMQRKERNNEPFTKKQYYKKLTQDYGRTVKAFEYRMQNISYVLSLMGRDWLTGLRPARNVGKRVACLIEALVLELSNSQQAPVVKFEFQVRENLENKKQAKPAGNSNPGTIIRQVAQFERDPAVKAWVLKKAAGVCECCSSNAPFESTDGQPFLEVHHIRKLAEGGSDTVSNTVALCPNCHRALHYGMRAKELIESIFIKVNRLIRE</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="104" xmlns="http://uniprot.org/uniprot">
    <accession>A9BUK4</accession>
    <name>A9BUK4_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="6 13 14">UDP-N-acetylmuramoylalanine--D-glutamate ligase</fullName>
            <ecNumber evidence="5 13 14">6.3.2.9</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="13">D-glutamic acid-adding enzyme</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="13">UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="13" type="primary">murD</name>
        <name evidence="18" type="ordered locus">Daci_1468</name>
    </gene>
    <organism evidence="18 19">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="18 19" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="19">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="19" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="19">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="13 14">Cell wall formation. Catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine (UMA).</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1 13 14">
            <text>ATP + D-glutamate + UDP-N-acetyl-alpha-D-muramoyl-L-alanine = ADP + H(+) + phosphate + UDP-N-acetyl-alpha-D-muramoyl-L-alanyl-D-glutamate</text>
            <dbReference type="Rhea" id="RHEA:16429"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:29986"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:43474"/>
            <dbReference type="ChEBI" id="CHEBI:83898"/>
            <dbReference type="ChEBI" id="CHEBI:83900"/>
            <dbReference type="ChEBI" id="CHEBI:456216"/>
            <dbReference type="EC" id="6.3.2.9"/>
        </reaction>
    </comment>
    <comment type="pathway">
        <text evidence="3 13 14">Cell wall biogenesis; peptidoglycan biosynthesis.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="2 13 14">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="4 13">Belongs to the MurCDEF family.</text>
    </comment>
    <dbReference type="EC" id="6.3.2.9" evidence="5 13 14"/>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX34112.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012203398.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_1468"/>
    <dbReference type="PRIDE" id="A9BUK4"/>
    <dbReference type="EnsemblBacteria" id="ABX34112">
        <property type="protein sequence ID" value="ABX34112"/>
        <property type="gene ID" value="Daci_1468"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_1468"/>
    <dbReference type="eggNOG" id="COG0771">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_032540_1_1_4"/>
    <dbReference type="OMA" id="CNFENYL"/>
    <dbReference type="UniPathway" id="UPA00219"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004326">
        <property type="term" value="F:tetrahydrofolylpolyglutamate synthase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008764">
        <property type="term" value="F:UDP-N-acetylmuramoylalanine-D-glutamate ligase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0007049">
        <property type="term" value="P:cell cycle"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051301">
        <property type="term" value="P:cell division"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0071555">
        <property type="term" value="P:cell wall organization"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009252">
        <property type="term" value="P:peptidoglycan biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008360">
        <property type="term" value="P:regulation of cell shape"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.1190.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.190.20">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00639">
        <property type="entry name" value="MurD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018109">
        <property type="entry name" value="Folylpolyglutamate_synth_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036565">
        <property type="entry name" value="Mur-like_cat_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004101">
        <property type="entry name" value="Mur_ligase_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036615">
        <property type="entry name" value="Mur_ligase_C_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013221">
        <property type="entry name" value="Mur_ligase_cen"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005762">
        <property type="entry name" value="MurD"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02875">
        <property type="entry name" value="Mur_ligase_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08245">
        <property type="entry name" value="Mur_ligase_M"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53244">
        <property type="entry name" value="SSF53244"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53623">
        <property type="entry name" value="SSF53623"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01087">
        <property type="entry name" value="murD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01011">
        <property type="entry name" value="FOLYLPOLYGLU_SYNT_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="13" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="11 13 14" id="KW-0131">Cell cycle</keyword>
    <keyword evidence="8 13 14" id="KW-0132">Cell division</keyword>
    <keyword evidence="9 13 14" id="KW-0133">Cell shape</keyword>
    <keyword evidence="12 13 14" id="KW-0961">Cell wall biogenesis/degradation</keyword>
    <keyword evidence="7 13" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="13 18" id="KW-0436">Ligase</keyword>
    <keyword evidence="13" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="10 13 14" id="KW-0573">Peptidoglycan synthesis</keyword>
    <keyword evidence="19" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Mur_ligase_M" evidence="17">
        <location>
            <begin position="271"/>
            <end position="478"/>
        </location>
    </feature>
    <feature type="domain" description="Mur_ligase_C" evidence="16">
        <location>
            <begin position="499"/>
            <end position="568"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="15">
        <location>
            <begin position="1"/>
            <end position="21"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="15">
        <location>
            <begin position="33"/>
            <end position="64"/>
        </location>
    </feature>
    <feature type="binding site" evidence="13">
        <location>
            <begin position="273"/>
            <end position="279"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001059"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00004496"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00004752"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00010416"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00012212"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00015655"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022490"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00022618"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00022960"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00022984"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="ARBA" id="ARBA00023306"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="12">
        <source>
            <dbReference type="ARBA" id="ARBA00023316"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="13">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00639"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="14">
        <source>
            <dbReference type="RuleBase" id="RU003664"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="15">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="16">
        <source>
            <dbReference type="Pfam" id="PF02875"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="17">
        <source>
            <dbReference type="Pfam" id="PF08245"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="18">
        <source>
            <dbReference type="EMBL" id="ABX34112.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="19">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="650" mass="67827" checksum="9AABADBEF1AB2769" modified="2008-01-15" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="74" xmlns="http://uniprot.org/uniprot">
    <accession>A9BUK9</accession>
    <name>A9BUK9_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="8">Cell division protein FtsQ</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="8" type="primary">ftsQ</name>
        <name evidence="10" type="ordered locus">Daci_1473</name>
    </gene>
    <organism evidence="10 11">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="10 11" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="11">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="11" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="11">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="8">Essential cell division protein. May link together the upstream cell division proteins, which are predominantly cytoplasmic, with the downstream cell division proteins, which are predominantly periplasmic. May control correct divisome assembly.</text>
    </comment>
    <comment type="subunit">
        <text evidence="8">Part of a complex composed of FtsB, FtsL and FtsQ.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="8">Cell inner membrane</location>
            <topology evidence="8">Single-pass type II membrane protein</topology>
        </subcellularLocation>
        <text evidence="8">Localizes to the division septum.</text>
    </comment>
    <comment type="similarity">
        <text evidence="8">Belongs to the FtsQ/DivIB family. FtsQ subfamily.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX34117.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012203403.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_1473"/>
    <dbReference type="PRIDE" id="A9BUK9"/>
    <dbReference type="EnsemblBacteria" id="ABX34117">
        <property type="protein sequence ID" value="ABX34117"/>
        <property type="gene ID" value="Daci_1473"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_1473"/>
    <dbReference type="eggNOG" id="COG1589">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_064041_0_0_4"/>
    <dbReference type="OMA" id="MARIQRF"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0032153">
        <property type="term" value="C:cell division site"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005887">
        <property type="term" value="C:integral component of plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0090529">
        <property type="term" value="P:cell septum assembly"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043093">
        <property type="term" value="P:FtsZ-dependent cytokinesis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.11690">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00911">
        <property type="entry name" value="FtsQ_subfam"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005548">
        <property type="entry name" value="Cell_div_FtsQ/DivIB_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR026579">
        <property type="entry name" value="FtsQ"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045335">
        <property type="entry name" value="FtsQ_C_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR034746">
        <property type="entry name" value="POTRA"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013685">
        <property type="entry name" value="POTRA_FtsQ_type"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR35851">
        <property type="entry name" value="PTHR35851"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03799">
        <property type="entry name" value="FtsQ"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08478">
        <property type="entry name" value="POTRA_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51779">
        <property type="entry name" value="POTRA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="7 8" id="KW-0131">Cell cycle</keyword>
    <keyword evidence="3 8" id="KW-0132">Cell division</keyword>
    <keyword evidence="2 8" id="KW-0997">Cell inner membrane</keyword>
    <keyword evidence="1 8" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="6 8" id="KW-0472">Membrane</keyword>
    <keyword evidence="11" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4 8" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="5 8" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="20"/>
            <end position="38"/>
        </location>
    </feature>
    <feature type="domain" description="POTRA" evidence="9">
        <location>
            <begin position="43"/>
            <end position="116"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022519"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022618"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023306"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00911"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="9">
        <source>
            <dbReference type="PROSITE" id="PS51779"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="EMBL" id="ABX34117.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="266" mass="29166" checksum="14B3E01EE3FA169A" modified="2008-01-15" version="1">MSYSLPAPFDVKLMNVTATVLFVGVAALGLAAVSWWALRHPAFNIGRIVVEGELVHNNTVTLRANVAPVLTGNFFTVDLKGAKAAFEQVPWVREAQVRRDYPNSLRVILHEHVAEAFWGPDSGTGLVNSFGEVFEANLGELDRDGLPRLQGPEDSAPQMLQMYRLLVPALGPLDVEIDGLTLNARGSWQLRLANDAQIELGGGSVEAVLQRVQRFVRTLPQITTQYKRKADAIESADLRYEDGYALRLRGVTTGTAKAPAAVRPRR</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="65" xmlns="http://uniprot.org/uniprot">
    <accession>A9BUL0</accession>
    <name>A9BUL0_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="5 6">Cell division protein FtsA</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="5" type="primary">ftsA</name>
        <name evidence="8" type="ordered locus">Daci_1474</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="9" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="5 6">Cell division protein that is involved in the assembly of the Z ring. May serve as a membrane anchor for the Z ring.</text>
    </comment>
    <comment type="subunit">
        <text evidence="5">Self-interacts. Interacts with FtsZ.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="5">Cell inner membrane</location>
            <topology evidence="5">Peripheral membrane protein</topology>
            <orientation evidence="5">Cytoplasmic side</orientation>
        </subcellularLocation>
        <text evidence="5">Localizes to the Z ring in an FtsZ-dependent manner. Targeted to the membrane through a conserved C-terminal amphipathic helix.</text>
    </comment>
    <comment type="similarity">
        <text evidence="5 6">Belongs to the FtsA/MreB family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX34118.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012203404.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_1474"/>
    <dbReference type="PRIDE" id="A9BUL0"/>
    <dbReference type="EnsemblBacteria" id="ABX34118">
        <property type="protein sequence ID" value="ABX34118"/>
        <property type="gene ID" value="Daci_1474"/>
    </dbReference>
    <dbReference type="GeneID" id="60686015"/>
    <dbReference type="KEGG" id="dac:Daci_1474"/>
    <dbReference type="eggNOG" id="COG0849">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_037850_3_2_4"/>
    <dbReference type="OMA" id="DGIIRHT"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0032153">
        <property type="term" value="C:cell division site"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009898">
        <property type="term" value="C:cytoplasmic side of plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043093">
        <property type="term" value="P:FtsZ-dependent cytokinesis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_02033">
        <property type="entry name" value="FtsA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043129">
        <property type="entry name" value="ATPase_NBD"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020823">
        <property type="entry name" value="Cell_div_FtsA"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003494">
        <property type="entry name" value="SHS2_FtsA"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02491">
        <property type="entry name" value="SHS2_FTSA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF003101">
        <property type="entry name" value="FtsA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00842">
        <property type="entry name" value="FtsA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53067">
        <property type="entry name" value="SSF53067"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01174">
        <property type="entry name" value="ftsA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4 5 6" id="KW-0131">Cell cycle</keyword>
    <keyword evidence="2 5 6" id="KW-0132">Cell division</keyword>
    <keyword evidence="5" id="KW-0997">Cell inner membrane</keyword>
    <keyword evidence="1 5" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="3 5" id="KW-0472">Membrane</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="FtsA" evidence="7">
        <location>
            <begin position="9"/>
            <end position="194"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022618"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023306"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_02033"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="PIRNR" id="PIRNR003101"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="SMART" id="SM00842"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="ABX34118.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="409" mass="43501" checksum="B82103F6E62388B6" modified="2008-01-15" version="1">MAREYKDVIVGLDIGTAKVMVVVAEVLYNGELKLAGLGVAPSNGLKRGVVVNIDATVQSIQQALKEAELMADCKIQRVCTGITGSHIRGLNSSGMVAIKDKEVTATDVARVMETAKAINISSDQRLLLVEPQEFVIDGQEVREPIGMSGIRLEAKIHIVTGAQSAAENIIKCVRRCGLEVEQLLLNPLASSQAVLTDDERELGVAVVDIGAGATDVAIFTGGAIRHTAVIPIAGDLITSDIAMALRTPTKDAEDIKVESGYAKQLLADPDAQVEVPGLGDRSPRMISKQALAGVIEPRVEEIFSLVQQVVRDSGYEEVLSSGIVLTGGSAVMPGMVELGEDIFLKPVRRGIPKYSSALADMVAQPRAATVMGLLEEARLARLRGFKVAQKSGSMKTAFGRFKDFIVGNF</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="80" xmlns="http://uniprot.org/uniprot">
    <accession>A9BUS0</accession>
    <name>A9BUS0_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="4">Ribosome-binding ATPase YchF</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="4" type="primary">ychF</name>
        <name evidence="7" type="ordered locus">Daci_1534</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="8" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="4">ATPase that binds to both the 70S ribosome and the 50S ribosomal subunit in a nucleotide-independent manner.</text>
    </comment>
    <comment type="similarity">
        <text evidence="4">Belongs to the TRAFAC class OBG-HflX-like GTPase superfamily. OBG GTPase family. YchF/OLA1 subfamily.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX34178.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012203464.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_1534"/>
    <dbReference type="PRIDE" id="A9BUS0"/>
    <dbReference type="EnsemblBacteria" id="ABX34178">
        <property type="protein sequence ID" value="ABX34178"/>
        <property type="gene ID" value="Daci_1534"/>
    </dbReference>
    <dbReference type="GeneID" id="60686074"/>
    <dbReference type="KEGG" id="dac:Daci_1534"/>
    <dbReference type="eggNOG" id="COG0012">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_018395_0_1_4"/>
    <dbReference type="OMA" id="VLRCFDN"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016887">
        <property type="term" value="F:ATP hydrolysis activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005525">
        <property type="term" value="F:GTP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043023">
        <property type="term" value="F:ribosomal large subunit binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043022">
        <property type="term" value="F:ribosome binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd04867">
        <property type="entry name" value="TGS_YchF_OLA1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="CDD" id="cd01900">
        <property type="entry name" value="YchF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.150.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.10.20.30">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00944">
        <property type="entry name" value="YchF_OLA1_ATPase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004396">
        <property type="entry name" value="ATPase_YchF/OLA1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012675">
        <property type="entry name" value="Beta-grasp_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR031167">
        <property type="entry name" value="G_OBG"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006073">
        <property type="entry name" value="GTP-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004095">
        <property type="entry name" value="TGS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012676">
        <property type="entry name" value="TGS-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023192">
        <property type="entry name" value="TGS-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013029">
        <property type="entry name" value="YchF_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041706">
        <property type="entry name" value="YchF_N"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01926">
        <property type="entry name" value="MMR_HSR1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF06071">
        <property type="entry name" value="YchF-GTPase_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF006641">
        <property type="entry name" value="CHP00092"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00326">
        <property type="entry name" value="GTP1OBG"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF81271">
        <property type="entry name" value="SSF81271"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00092">
        <property type="entry name" value="TIGR00092"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51710">
        <property type="entry name" value="G_OBG"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51880">
        <property type="entry name" value="TGS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2 4" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="3" id="KW-0460">Magnesium</keyword>
    <keyword evidence="1 4" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="OBG-type G" evidence="5">
        <location>
            <begin position="3"/>
            <end position="257"/>
        </location>
    </feature>
    <feature type="domain" description="TGS" evidence="6">
        <location>
            <begin position="279"/>
            <end position="362"/>
        </location>
    </feature>
    <feature type="binding site" evidence="4">
        <location>
            <begin position="12"/>
            <end position="17"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022842"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00944"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="PROSITE" id="PS51710"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="PROSITE" id="PS51880"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="ABX34178.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="364" mass="39047" checksum="DB8E77F5A74805FC" modified="2008-01-15" version="1">MSLKCGIVGLPNVGKSTLFNALTKAGIAAENYPFCTIEPNTGVVEVPDPRLQKLADIITPERIVPAIVEFVDIAGLVAGASKGEGLGNQFLAHIRETDAIVNVVRCFEDPNVIHVANKVDPIADIEVIQTELCLADLATVEKALNRYSKAAKSGNDKEAAKVVALLTPIQAALDQGKPARTVPVSKEDAPLLKQFCLITAKPAMFVGNVSEDGFENNPLLDSLKAYAEAQGAPVVAICAKIEAEMAEMSDEDRDMFLQELGLEEPGLNRLIRAGFGLLGLQTYFTAGVKEVRAWTIKVGDTAPQAAGVIHGDFERGFIRAQTIAFDDFIAFKGEQGAKDAGKMRAEGKEYVVKDGDVMNFLFNV</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="77" xmlns="http://uniprot.org/uniprot">
    <accession>A9BV25</accession>
    <name>A9BV25_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Transcriptional regulator, LysR family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Daci_1847</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="4" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the LysR transcriptional regulatory family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX34487.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012203772.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_1847"/>
    <dbReference type="PRIDE" id="A9BV25"/>
    <dbReference type="EnsemblBacteria" id="ABX34487">
        <property type="protein sequence ID" value="ABX34487"/>
        <property type="gene ID" value="Daci_1847"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_1847"/>
    <dbReference type="eggNOG" id="COG0583">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_039613_6_2_4"/>
    <dbReference type="OMA" id="RFQGFTP"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003700">
        <property type="term" value="F:DNA-binding transcription factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005119">
        <property type="entry name" value="LysR_subst-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000847">
        <property type="entry name" value="Tscrpt_reg_HTH_LysR"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036390">
        <property type="entry name" value="WH_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00126">
        <property type="entry name" value="HTH_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03466">
        <property type="entry name" value="LysR_substrate"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00039">
        <property type="entry name" value="HTHLYSR"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46785">
        <property type="entry name" value="SSF46785"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50931">
        <property type="entry name" value="HTH_LYSR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HTH lysR-type" evidence="2">
        <location>
            <begin position="1"/>
            <end position="59"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00009437"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS50931"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ABX34487.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="322" mass="35036" checksum="B01D99DCB14D9A23" modified="2008-01-15" version="1">MNLLTSMRYLAALNEHRHFGRAALACHITQPALSNALRALEEEFGTVIVRRGRSFAGFTPEGDQVLATALAMLRAEEGLRQELSAAAGALRGQLRMAAVPTAMPMLTRFAALLREHHPGITPVVLSMSSAEIESGLEDLSLDLALGYSARMPPRGPRLQSWPQYEEHYYLLCRECREYRDGQGEGRPFAFGADIAWREVAAMPLCLLTPDMHNRTVIDEAFAAVDMAVQPAMETNSVLTLVMAVAQGTDGMTTVLPGAMVATVRHMPGLVARPLRSPELVTPIGFMAQQGVAPTRALQAALQLQDAAEWRAQCLRHAGALKN</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="81" xmlns="http://uniprot.org/uniprot">
    <accession>A9BV62</accession>
    <name>A9BV62_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="6">Transcriptional regulator, GntR family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ordered locus">Daci_2086</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="7" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX34726.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012204009.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_2086"/>
    <dbReference type="PRIDE" id="A9BV62"/>
    <dbReference type="EnsemblBacteria" id="ABX34726">
        <property type="protein sequence ID" value="ABX34726"/>
        <property type="gene ID" value="Daci_2086"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_2086"/>
    <dbReference type="eggNOG" id="COG1802">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_071276_0_0_4"/>
    <dbReference type="OMA" id="CIAFGHY"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003700">
        <property type="term" value="F:DNA-binding transcription factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.120.530">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008920">
        <property type="entry name" value="TF_FadR/GntR_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000524">
        <property type="entry name" value="Tscrpt_reg_HTH_GntR"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036390">
        <property type="entry name" value="WH_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00392">
        <property type="entry name" value="GntR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00345">
        <property type="entry name" value="HTH_GNTR"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46785">
        <property type="entry name" value="SSF46785"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50949">
        <property type="entry name" value="HTH_GNTR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0804">Transcription</keyword>
    <keyword evidence="1" id="KW-0805">Transcription regulation</keyword>
    <feature type="domain" description="HTH gntR-type" evidence="5">
        <location>
            <begin position="29"/>
            <end position="96"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="4">
        <location>
            <begin position="1"/>
            <end position="28"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023015"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023163"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="PROSITE" id="PS50949"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="ABX34726.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="358" mass="40117" checksum="CEEBFF61F08DF92D" modified="2008-01-15" version="1">MRRATQASTQTARDEETGEPGESGDSERRLRYELIRQRLRQAIVEQRVAPGLVLLEGPVAKVFGTSRIPVRKAFELLHAEGLLSTFDGRGYLVARPGQAVQPQRLTLDAQALGLEAGQATIHIPSESERIHDELEQSISIAMIFGRFQIDESAAMDHFNVNRVALREVLSRLVDRGLVEKSTYAAWRVAALTARAVNQDFELLALLAPAALRESGPRLDREMLASLRQGLQGATAPGVPDTQEPLRPEQRLEQRVEQHLHGDFLARHPNDKLVGMLQQCQMPWLIHSTFCRMFPQSPNPPLTENCRQVVDALWEGEFERAAQALQDYLAQARKRAQLQLKVLAVLPETQLPAYLVRQA</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="67" xmlns="http://uniprot.org/uniprot">
    <accession>A9BV84</accession>
    <name>A9BV84_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Peptidase dimerisation domain protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Daci_2108</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="4" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX34748.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012204031.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_2108"/>
    <dbReference type="PRIDE" id="A9BV84"/>
    <dbReference type="EnsemblBacteria" id="ABX34748">
        <property type="protein sequence ID" value="ABX34748"/>
        <property type="gene ID" value="Daci_2108"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_2108"/>
    <dbReference type="eggNOG" id="COG0624">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_021802_2_3_4"/>
    <dbReference type="OMA" id="GDCAPHA"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016787">
        <property type="term" value="F:hydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001261">
        <property type="entry name" value="ArgE/DapE_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036264">
        <property type="entry name" value="Bact_exopeptidase_dim_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002933">
        <property type="entry name" value="Peptidase_M20"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011650">
        <property type="entry name" value="Peptidase_M20_dimer"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07687">
        <property type="entry name" value="M20_dimer"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01546">
        <property type="entry name" value="Peptidase_M20"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55031">
        <property type="entry name" value="SSF55031"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00758">
        <property type="entry name" value="ARGE_DAPE_CPG2_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="M20_dimer" evidence="2">
        <location>
            <begin position="205"/>
            <end position="312"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF07687"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ABX34748.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="430" mass="46116" checksum="9387380616BA2DB5" modified="2008-01-15" version="1">MTDMNQDKQATYAALDAWIDQHFDEEVQFLQALVQVPTDTPPGNNAPHAERTAELLKTLGYEAEKHTVPEADVKAYGMESITNLIVRRPYGSAGDAGGGLTIALNAHGDVVPPGEGWTQDPYGAAIEDGKLYGRAAAVSKSDFATFTYAVRALEAVARPSKGAVELHFTYDEEFGGILGPGWLLANNLTQPDLMVAAGFSYEVVTAHNGCLQMEVTVQGKMAHAAVPHTGVDALQAAVVLMNALYAENTKYQQVTSKVPGIKHPYLNIGRIEGGTNTNVVPGKVVLKIDRRMIPEENPAEVEASIRAVIAQAIADFNAKGGYTGEDAVRVDIKRLLLANAMTPLAGNKPLVDAIQAHGEAVFGEKPPAVGTPLYTDVRLYVERGIPGVIYGAGPRTVLESHAKRADERLVLEDLRRATKVIARMLCDLTA</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="71" xmlns="http://uniprot.org/uniprot">
    <accession>A9BVP5</accession>
    <name>A9BVP5_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Ribosome biogenesis GTPase A</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="5" type="ordered locus">Daci_2474</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="6" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="1">Required for a late step of 50S ribosomal subunit assembly. Has GTPase activity.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="1">Belongs to the TRAFAC class YlqF/YawG GTPase family. MTG1 subfamily.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX35112.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012204393.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_2474"/>
    <dbReference type="PRIDE" id="A9BVP5"/>
    <dbReference type="EnsemblBacteria" id="ABX35112">
        <property type="protein sequence ID" value="ABX35112"/>
        <property type="gene ID" value="Daci_2474"/>
    </dbReference>
    <dbReference type="GeneID" id="60686840"/>
    <dbReference type="KEGG" id="dac:Daci_2474"/>
    <dbReference type="eggNOG" id="COG1161">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_011106_1_0_4"/>
    <dbReference type="OMA" id="GVLWPKF"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005525">
        <property type="term" value="F:GTP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.1580.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006073">
        <property type="entry name" value="GTP-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023179">
        <property type="entry name" value="GTP-bd_ortho_bundle_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019991">
        <property type="entry name" value="GTP-bd_ribosome_bgen"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016478">
        <property type="entry name" value="GTPase_MTG1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01926">
        <property type="entry name" value="MMR_HSR1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF006230">
        <property type="entry name" value="MG442"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR03596">
        <property type="entry name" value="GTPase_YlqF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="1" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="1 2" id="KW-0342">GTP-binding</keyword>
    <keyword evidence="1 2" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="G" evidence="4">
        <location>
            <begin position="116"/>
            <end position="175"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="3">
        <location>
            <begin position="291"/>
            <end position="317"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic residues" evidence="3">
        <location>
            <begin position="303"/>
            <end position="317"/>
        </location>
    </feature>
    <feature type="binding site" evidence="2">
        <location>
            <begin position="58"/>
            <end position="61"/>
        </location>
        <ligand>
            <name>GTP</name>
            <dbReference type="ChEBI" id="CHEBI:37565"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="2">
        <location>
            <begin position="124"/>
            <end position="129"/>
        </location>
        <ligand>
            <name>GTP</name>
            <dbReference type="ChEBI" id="CHEBI:37565"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="2">
        <location>
            <position position="168"/>
        </location>
        <ligand>
            <name>GTP</name>
            <dbReference type="ChEBI" id="CHEBI:37565"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="PIRNR" id="PIRNR006230"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="PIRSR" id="PIRSR006230-1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="Pfam" id="PF01926"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="ABX35112.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="317" mass="35301" checksum="BF023F95831FFF36" modified="2008-01-15" version="1">MAIQWFPGHMNLTRKVITERVKEIDVVIEVLDARLPGSSSNPLLQELTGHKPRLQVLNKQDLADAARTPLWLDWYNAQSDTRAIALDASEPAPTRRLIEACKLLAPNRGGMAKPMRVLICGIPNVGKSTLINSMSGKRQAKTGDEAGITKLEQRIVLADDFYLWDTPGMLWPRIIVEQSGYNLAASGAVGRNAYDEELVALELLGYLQKNYADLLEARYKLGLDNERIAALHDDELLDAIGRRRGAMMSGGRVNLQKAAELVLTDFRGAILGRITLETPDEYAQWLAVGQERDAERQARKDASKARKRPPRERKSAP</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="68" xmlns="http://uniprot.org/uniprot">
    <accession>A9BVS2</accession>
    <name>A9BVS2_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Aminotransferase class-III</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Daci_2797</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="4" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="2">Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX35435.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012204645.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_2797"/>
    <dbReference type="PRIDE" id="A9BVS2"/>
    <dbReference type="EnsemblBacteria" id="ABX35435">
        <property type="protein sequence ID" value="ABX35435"/>
        <property type="gene ID" value="Daci_2797"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_2797"/>
    <dbReference type="eggNOG" id="COG0161">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_016922_4_0_4"/>
    <dbReference type="OMA" id="RHIIARR"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030170">
        <property type="term" value="F:pyridoxal phosphate binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008483">
        <property type="term" value="F:transaminase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd00610">
        <property type="entry name" value="OAT_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.640.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.1150.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005814">
        <property type="entry name" value="Aminotrans_3"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015424">
        <property type="entry name" value="PyrdxlP-dep_Trfase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015421">
        <property type="entry name" value="PyrdxlP-dep_Trfase_major"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015422">
        <property type="entry name" value="PyrdxlP-dep_Trfase_small"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00202">
        <property type="entry name" value="Aminotran_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53383">
        <property type="entry name" value="SSF53383"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00600">
        <property type="entry name" value="AA_TRANSFER_CLASS_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-0032">Aminotransferase</keyword>
    <keyword evidence="1 2" id="KW-0663">Pyridoxal phosphate</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0808">Transferase</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022898"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="RuleBase" id="RU003560"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ABX35435.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="447" mass="47447" checksum="DA906B325B5C17A0" modified="2008-01-15" version="1">MSHVFHRHLHHTPPVAVAASGLEIRDAQGRSYIDASGGAAVSSLGHGHPDVIAAMHDQIDRLAYAHTSFFTTAVAEELGQELVRGAPEGTSHAYLVSGGSEAVEAALKMARQYFVEIGQPERTHFIARRQSYHGNTLGALAVGGNAWRRAPFAPILVPATHVSPCNAYRDQRDDETPEQYGQRLADELDAAIGVHGPRTVIAFVAETVGGATAGVLTPVPGYFKAVREVCDRHGVLLILDEVMCGMGRTGTLHACEQEGVVPDLITVAKGLGGGYQPVGAVLAQGRIVDAMSRGSGFFQHGHTYLGHPVACAAALAVQRVIRRDGLLDKVRTDGEAFGQMLAQALGSHRRVGEHVGDIRGRGFFWGVELVANRASKAPFDAGLKLNARIKTEAMQRGLLCYPGGGTADGRTGDHVLLAPPFIATQEQLQTIATRLAESIEAALAQVL</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="68" xmlns="http://uniprot.org/uniprot">
    <accession>A9BVT8</accession>
    <name>A9BVT8_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="7">Major facilitator superfamily MFS_1</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ordered locus">Daci_2813</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="8" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX35451.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012204661.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_2813"/>
    <dbReference type="PRIDE" id="A9BVT8"/>
    <dbReference type="EnsemblBacteria" id="ABX35451">
        <property type="protein sequence ID" value="ABX35451"/>
        <property type="gene ID" value="Daci_2813"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_2813"/>
    <dbReference type="eggNOG" id="COG2271">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_001265_0_0_4"/>
    <dbReference type="OMA" id="VIVCWFN"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0022857">
        <property type="term" value="F:transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.1250.20">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011701">
        <property type="entry name" value="MFS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020846">
        <property type="entry name" value="MFS_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036259">
        <property type="entry name" value="MFS_trans_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07690">
        <property type="entry name" value="MFS_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF103473">
        <property type="entry name" value="SSF103473"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50850">
        <property type="entry name" value="MFS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4 5" id="KW-0472">Membrane</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 5" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="3 5" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="30"/>
            <end position="48"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="68"/>
            <end position="87"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="99"/>
            <end position="118"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="124"/>
            <end position="146"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="158"/>
            <end position="181"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="193"/>
            <end position="215"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="260"/>
            <end position="281"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="293"/>
            <end position="314"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="326"/>
            <end position="345"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="351"/>
            <end position="371"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="383"/>
            <end position="405"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="417"/>
            <end position="436"/>
        </location>
    </feature>
    <feature type="domain" description="MFS" evidence="6">
        <location>
            <begin position="34"/>
            <end position="441"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="PROSITE" id="PS50850"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="ABX35451.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="443" mass="48443" checksum="852A32DFC928E799" modified="2008-01-15" version="1">MTTTDIASGQAGAHPAQAASPETARAYAKVFWRLVPFLMLCYVIAYLDRVNVGFAKLQMSQDLGFSETVFGLGAGVFFIGYFLFEVPSNLLMHRLGARVWIARIMITWGILSAMFMYVETPTGFYILRFLLGLAEAGFYPGVILYLTYWYPAHRRAKIVALFMSAIPVAGIFGNPLSGWIMQAFHGDHGLHGWQWMFLIEAIPALVIGVVTIFYLDNGISSAKWLTASEKQLLAREIELDQQHSGAQKHSLKAVFADRRVWWMCLIYFAFVAGQYGLTFWMPTLIKSTGVTGALNIGLLSAIPFLCAIVVMNLMGHSADKRRERRWHLIVPALMGAVGFAMTAFFADNTVLSLIFLSLAAAGVLTCAPLFWSLPTAFLSGTAAAAGIAIVNSVGNLAGFASPYMIGYLKDLTQSTQAGMFVLAGVLVVGAIAVWLTPAKMVNR</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="68" xmlns="http://uniprot.org/uniprot">
    <accession>A9BWB6</accession>
    <name>A9BWB6_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Outer membrane protein assembly factor BamD</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="1" type="primary">bamD</name>
        <name evidence="3" type="ordered locus">Daci_3500</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="4" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="1">Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane.</text>
    </comment>
    <comment type="subunit">
        <text evidence="1">Part of the Bam complex.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Cell outer membrane</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="1">Belongs to the BamD family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX36136.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012205336.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_3500"/>
    <dbReference type="PRIDE" id="A9BWB6"/>
    <dbReference type="EnsemblBacteria" id="ABX36136">
        <property type="protein sequence ID" value="ABX36136"/>
        <property type="gene ID" value="Daci_3500"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_3500"/>
    <dbReference type="eggNOG" id="COG4105">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_065982_0_1_4"/>
    <dbReference type="OMA" id="VERQHPY"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009279">
        <property type="term" value="C:cell outer membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043165">
        <property type="term" value="P:Gram-negative-bacterium-type cell outer membrane assembly"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051205">
        <property type="term" value="P:protein insertion into membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd15830">
        <property type="entry name" value="BamD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.25.40.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00922">
        <property type="entry name" value="OM_assembly_BamD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017689">
        <property type="entry name" value="BamD"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR039565">
        <property type="entry name" value="BamD-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011990">
        <property type="entry name" value="TPR-like_helical_dom_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13525">
        <property type="entry name" value="YfiO"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48452">
        <property type="entry name" value="SSF48452"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR03302">
        <property type="entry name" value="OM_YfiO"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="1" id="KW-0998">Cell outer membrane</keyword>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <keyword evidence="3" id="KW-0812">Transmembrane</keyword>
    <feature type="signal peptide" evidence="1">
        <location>
            <begin position="1"/>
            <end position="20"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5009007254" description="Outer membrane protein assembly factor BamD" evidence="1">
        <location>
            <begin position="21"/>
            <end position="263"/>
        </location>
    </feature>
    <feature type="domain" description="YfiO" evidence="2">
        <location>
            <begin position="33"/>
            <end position="238"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00922"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF13525"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ABX36136.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="263" mass="29590" checksum="9DE542C0F2D1E149" modified="2008-01-15" version="1" precursor="true">MQRIPLSIVPAMLVAGVLTACSSTQQDPTAKWTPDRIYTEARDEAASGAFDKAVPLFEKLEGRAAGTPLAQQAQLDKAYAQYKSGDKIQATATLDRFLKLHPASPATDYALYLKGLVNFNDNLGMFSWLSRQDLSERDQKAAKDSFESFRELVTRFPESRYAEDSRLRMQYIVNSLAQYEVHVARYYYGRGAYVAAIARAQTAVKDYQGVPAVREAMQILVNSYDALGMTQLRDDAQRVLTASYGQESDQDLTAKQKSWWKLW</sequence>
</entry>
<entry dataset="Swiss-Prot" created="2009-04-14" modified="2022-08-03" version="82" xmlns="http://uniprot.org/uniprot">
    <accession>A9BWD4</accession>
    <name>UPP_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Uracil phosphoribosyltransferase</fullName>
            <ecNumber evidence="1">2.4.2.9</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="1">UMP pyrophosphorylase</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="1">UPRTase</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="1" type="primary">upp</name>
        <name type="ordered locus">Daci_3518</name>
    </gene>
    <organism>
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference key="1">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain>DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="1">Catalyzes the conversion of uracil and 5-phospho-alpha-D-ribose 1-diphosphate (PRPP) to UMP and diphosphate.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>diphosphate + UMP = 5-phospho-alpha-D-ribose 1-diphosphate + uracil</text>
            <dbReference type="Rhea" id="RHEA:13017"/>
            <dbReference type="ChEBI" id="CHEBI:17568"/>
            <dbReference type="ChEBI" id="CHEBI:33019"/>
            <dbReference type="ChEBI" id="CHEBI:57865"/>
            <dbReference type="ChEBI" id="CHEBI:58017"/>
            <dbReference type="EC" id="2.4.2.9"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </cofactor>
        <text evidence="1">Binds 1 Mg(2+) ion per subunit. The magnesium is bound as Mg-PRPP.</text>
    </comment>
    <comment type="activity regulation">
        <text evidence="1">Allosterically activated by GTP.</text>
    </comment>
    <comment type="pathway">
        <text evidence="1">Pyrimidine metabolism; UMP biosynthesis via salvage pathway; UMP from uracil: step 1/1.</text>
    </comment>
    <comment type="similarity">
        <text evidence="1">Belongs to the UPRTase family.</text>
    </comment>
    <dbReference type="EC" id="2.4.2.9" evidence="1"/>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX36154.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012205354.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A9BWD4"/>
    <dbReference type="SMR" id="A9BWD4"/>
    <dbReference type="STRING" id="398578.Daci_3518"/>
    <dbReference type="PRIDE" id="A9BWD4"/>
    <dbReference type="EnsemblBacteria" id="ABX36154">
        <property type="protein sequence ID" value="ABX36154"/>
        <property type="gene ID" value="Daci_3518"/>
    </dbReference>
    <dbReference type="GeneID" id="60687744"/>
    <dbReference type="KEGG" id="dac:Daci_3518"/>
    <dbReference type="eggNOG" id="COG0035">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_067096_2_2_4"/>
    <dbReference type="OMA" id="TYATRMP"/>
    <dbReference type="UniPathway" id="UPA00574">
        <property type="reaction ID" value="UER00636"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005525">
        <property type="term" value="F:GTP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000287">
        <property type="term" value="F:magnesium ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004845">
        <property type="term" value="F:uracil phosphoribosyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0044206">
        <property type="term" value="P:UMP salvage"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniPathway"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006223">
        <property type="term" value="P:uracil salvage"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd06223">
        <property type="entry name" value="PRTases_typeI"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.2020">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01218_B">
        <property type="entry name" value="Upp_B"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000836">
        <property type="entry name" value="PRibTrfase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029057">
        <property type="entry name" value="PRTase-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR034332">
        <property type="entry name" value="Upp_B"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005765">
        <property type="entry name" value="Ura_phspho_trans"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53271">
        <property type="entry name" value="SSF53271"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01091">
        <property type="entry name" value="upp"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword id="KW-0021">Allosteric enzyme</keyword>
    <keyword id="KW-0328">Glycosyltransferase</keyword>
    <keyword id="KW-0342">GTP-binding</keyword>
    <keyword id="KW-0460">Magnesium</keyword>
    <keyword id="KW-0547">Nucleotide-binding</keyword>
    <keyword id="KW-1185">Reference proteome</keyword>
    <keyword id="KW-0808">Transferase</keyword>
    <feature type="chain" id="PRO_1000139113" description="Uracil phosphoribosyltransferase">
        <location>
            <begin position="1"/>
            <end position="209"/>
        </location>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <position position="79"/>
        </location>
        <ligand>
            <name>5-phospho-alpha-D-ribose 1-diphosphate</name>
            <dbReference type="ChEBI" id="CHEBI:58017"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <position position="104"/>
        </location>
        <ligand>
            <name>5-phospho-alpha-D-ribose 1-diphosphate</name>
            <dbReference type="ChEBI" id="CHEBI:58017"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <begin position="131"/>
            <end position="139"/>
        </location>
        <ligand>
            <name>5-phospho-alpha-D-ribose 1-diphosphate</name>
            <dbReference type="ChEBI" id="CHEBI:58017"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <position position="194"/>
        </location>
        <ligand>
            <name>uracil</name>
            <dbReference type="ChEBI" id="CHEBI:17568"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <begin position="199"/>
            <end position="201"/>
        </location>
        <ligand>
            <name>uracil</name>
            <dbReference type="ChEBI" id="CHEBI:17568"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <position position="200"/>
        </location>
        <ligand>
            <name>5-phospho-alpha-D-ribose 1-diphosphate</name>
            <dbReference type="ChEBI" id="CHEBI:58017"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000255" key="1">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01218"/>
        </source>
    </evidence>
    <sequence length="209" mass="23074" checksum="2B0B6209EDA9834F" modified="2008-01-15" version="1">MSTLHLIDHPLVQHKLTLMRRKEASTNSFRRMLGELSTLMAYEITRDMPLQDIEIETPLETMTGKVIDGKKLVLVSILRAGNGFLDGMLNVVPGARIGHIGLYRDPETLQPVEYYFKMPSEMEERDVLVVDPMLATGNSAAAAVARLKQLNPKSIKFMCLLAAPEGVATMQKAHPDVDIYTAAVDRQLDAHGYILPGLGDAGDRIFGTK</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="58" xmlns="http://uniprot.org/uniprot">
    <accession>A9BWJ5</accession>
    <name>A9BWJ5_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ordered locus">Daci_3581</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="5" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Periplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the UPF0065 (bug) family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX36215.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012205415.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_3581"/>
    <dbReference type="PRIDE" id="A9BWJ5"/>
    <dbReference type="EnsemblBacteria" id="ABX36215">
        <property type="protein sequence ID" value="ABX36215"/>
        <property type="gene ID" value="Daci_3581"/>
    </dbReference>
    <dbReference type="GeneID" id="60687790"/>
    <dbReference type="KEGG" id="dac:Daci_3581"/>
    <dbReference type="eggNOG" id="COG3181">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_045683_0_0_4"/>
    <dbReference type="OMA" id="QRISAYP"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0042597">
        <property type="term" value="C:periplasmic space"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.190.150">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005064">
        <property type="entry name" value="BUG"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR042100">
        <property type="entry name" value="Bug_dom1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006311">
        <property type="entry name" value="TAT_signal"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR42928">
        <property type="entry name" value="PTHR42928"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03401">
        <property type="entry name" value="TctC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF017082">
        <property type="entry name" value="YflP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51318">
        <property type="entry name" value="TAT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="3">
        <location>
            <begin position="1"/>
            <end position="29"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5002733126" evidence="3">
        <location>
            <begin position="30"/>
            <end position="331"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004418"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00006987"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="ABX36215.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="331" mass="34574" checksum="84AF4C012DEB841C" modified="2008-01-15" version="1">MHQPSRLPRRTALAALLATVLPLAGVSFAAPAADAWPTRPIRLVVPFSAGGANDLMARSAAEGASKILGQPVVIDNRPGAGGTVGADIVAKAQPDGYTLLVSAAGVISNSMIKKTMPFKDDALVPVAMIGLAPSVIVVPKNAPYQNLRDFVEASKKGQGFNFATAGTGSTPHFVAEMLNVKYGAQLQPVPYKSGSESTTAVLGGQVEGTSEASIIALPHILNEGKFKALATTWTQRISAYPQLSTAVEQGFAELQIAHWAGIHAPKGTPPAILDKLAAAVDQAMKEPATVEKLKGLGIEPIGGTRAEFVKFTDAERKRLGEIVKAAKMQEK</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="92" xmlns="http://uniprot.org/uniprot">
    <accession>A9BWJ6</accession>
    <name>A9BWJ6_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="7">Proprionate catabolism activator, Fis family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ordered locus">Daci_3582</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="8" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX36216.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_3582"/>
    <dbReference type="PRIDE" id="A9BWJ6"/>
    <dbReference type="EnsemblBacteria" id="ABX36216">
        <property type="protein sequence ID" value="ABX36216"/>
        <property type="gene ID" value="Daci_3582"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_3582"/>
    <dbReference type="eggNOG" id="COG3829">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_000445_8_5_4"/>
    <dbReference type="OMA" id="IMLYARS"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000156">
        <property type="term" value="F:phosphorelay response regulator activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043565">
        <property type="term" value="F:sequence-specific DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0019629">
        <property type="term" value="P:propionate catabolic process, 2-methylcitrate cycle"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006355">
        <property type="term" value="P:regulation of transcription, DNA-templated"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003593">
        <property type="entry name" value="AAA+_ATPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009057">
        <property type="entry name" value="Homeobox-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002197">
        <property type="entry name" value="HTH_Fis"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000014">
        <property type="entry name" value="PAS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035965">
        <property type="entry name" value="PAS-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013767">
        <property type="entry name" value="PAS_fold"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012704">
        <property type="entry name" value="Sig_transdc_resp-reg_PrpR"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010524">
        <property type="entry name" value="Sig_transdc_resp-reg_PrpR_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002078">
        <property type="entry name" value="Sigma_54_int"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025662">
        <property type="entry name" value="Sigma_54_int_dom_ATP-bd_1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025943">
        <property type="entry name" value="Sigma_54_int_dom_ATP-bd_2"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02954">
        <property type="entry name" value="HTH_8"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00989">
        <property type="entry name" value="PAS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF06506">
        <property type="entry name" value="PrpR_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00158">
        <property type="entry name" value="Sigma54_activat"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00382">
        <property type="entry name" value="AAA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00091">
        <property type="entry name" value="PAS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46689">
        <property type="entry name" value="SSF46689"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55785">
        <property type="entry name" value="SSF55785"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR02329">
        <property type="entry name" value="propionate_PrpR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50112">
        <property type="entry name" value="PAS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00675">
        <property type="entry name" value="SIGMA54_INTERACT_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00676">
        <property type="entry name" value="SIGMA54_INTERACT_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50045">
        <property type="entry name" value="SIGMA54_INTERACT_4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="1" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4" id="KW-0804">Transcription</keyword>
    <keyword evidence="3" id="KW-0805">Transcription regulation</keyword>
    <feature type="domain" description="PAS" evidence="6">
        <location>
            <begin position="223"/>
            <end position="268"/>
        </location>
    </feature>
    <feature type="domain" description="Sigma-54 factor interaction" evidence="5">
        <location>
            <begin position="355"/>
            <end position="591"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023015"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023163"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="PROSITE" id="PS50045"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="PROSITE" id="PS50112"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="ABX36216.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="681" mass="73741" checksum="7D51F07FE703C8CF" modified="2008-01-15" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="64" xmlns="http://uniprot.org/uniprot">
    <accession>A9BX24</accession>
    <name>A9BX24_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Monooxygenase FAD-binding</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Daci_4378</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="4" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX37009.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_4378"/>
    <dbReference type="PRIDE" id="A9BX24"/>
    <dbReference type="EnsemblBacteria" id="ABX37009">
        <property type="protein sequence ID" value="ABX37009"/>
        <property type="gene ID" value="Daci_4378"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_4378"/>
    <dbReference type="eggNOG" id="COG0654">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_009665_19_5_4"/>
    <dbReference type="OMA" id="IAGYCPT"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0071949">
        <property type="term" value="F:FAD binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004497">
        <property type="term" value="F:monooxygenase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.50.50.60">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002938">
        <property type="entry name" value="FAD-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036188">
        <property type="entry name" value="FAD/NAD-bd_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01494">
        <property type="entry name" value="FAD_binding_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51905">
        <property type="entry name" value="SSF51905"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-0503">Monooxygenase</keyword>
    <keyword evidence="3" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="12"/>
            <end position="31"/>
        </location>
    </feature>
    <feature type="domain" description="FAD_binding_3" evidence="2">
        <location>
            <begin position="13"/>
            <end position="331"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF01494"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ABX37009.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="420" mass="45445" checksum="D529AF96F87EB609" modified="2008-01-15" version="1">MRRAPYRQERFSVEIGILGGGIAGLSVALTLRRQGYNPRVYERRTAPATMGAGVTLWPNASFVLQELGLLQDIKAIGGRPLTMRRQDAVGNALGGLDIALLDRMMGYPTYTVLRRHLQEVLLDHAARAGIPVEFGHRAVAIELDANGRAMAHFDNGASTRPDLLIGADGRMDSVARKFVAGDNTPVYQGFVNWIGVAQAQHALVDDIAIQDFWGAGERFGCVAIRPELVYWAAAQARPLSEARPAADMRKEVDDLFAGWPEPVVHIIRATPANAIRLIAVHDLEPLHTWSRANVLLVGDAAHAPLPTSGQGACQALEDAWHLARCLDATSGGLDDVFQAFARIRAPKTARLTEQGRVFARGLFGTDPEACRIRNERAKASNPMHDVQVLAAGWAQGLPMPVCTDGAPAQGEGFGSLLRIE</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2021-06-02" version="29" xmlns="http://uniprot.org/uniprot">
    <accession>A9BX40</accession>
    <name>A9BX40_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_4394</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX37025.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_4394"/>
    <dbReference type="EnsemblBacteria" id="ABX37025">
        <property type="protein sequence ID" value="ABX37025"/>
        <property type="gene ID" value="Daci_4394"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_4394"/>
    <dbReference type="HOGENOM" id="CLU_3098050_0_0_4"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="51"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="21"/>
            <end position="51"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX37025.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="51" mass="5834" checksum="535D0121DC84A808" modified="2008-01-15" version="1">MKQLIPMAGSHHRSYVPMQMGQPISDGNYTQQQTKANQRQIGQPLPQKQQQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="55" xmlns="http://uniprot.org/uniprot">
    <accession>A9BXC4</accession>
    <name>A9BXC4_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Methyltranfer_dom domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_5571</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX38200.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012207369.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_5571"/>
    <dbReference type="PRIDE" id="A9BXC4"/>
    <dbReference type="EnsemblBacteria" id="ABX38200">
        <property type="protein sequence ID" value="ABX38200"/>
        <property type="gene ID" value="Daci_5571"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_5571"/>
    <dbReference type="eggNOG" id="COG2518">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_031012_2_0_4"/>
    <dbReference type="OMA" id="LWRHPIH"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.150">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025714">
        <property type="entry name" value="Methyltranfer_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029063">
        <property type="entry name" value="SAM-dependent_MTases_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13679">
        <property type="entry name" value="Methyltransf_32"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53335">
        <property type="entry name" value="SSF53335"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Methyltranfer_dom" evidence="1">
        <location>
            <begin position="49"/>
            <end position="189"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF13679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX38200.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="290" mass="32249" checksum="D6288EDEEF0D734E" modified="2008-01-15" version="1">MKARQGKPAAKPEQDVTEQLGLKPGQSIELLKALHILTREGKINQDSRRKLKQVYHLYQFIAPILEELSADDHAVTLADHGAGKSYLGFILYDLYFKPLGRGHIYGIETRAPLVEASQKLAAELGFDRMGFLNMSVAESTHADFMPAQFDVVTALHACDTATDDAIAFGLEKKAKAMVLVPCCQAEVAACLRQTKALSLTRTPLAELWRHPIHTREMGSQLTNVLRCLYLEACGYQVTVTELVGWEHSMKNELIIARYTGQKKRSSVERLRAILEEFGLSGSALAHRFGQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="74" xmlns="http://uniprot.org/uniprot">
    <accession>A9BXQ7</accession>
    <name>A9BXQ7_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Calcium-binding EF-hand-containing protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ordered locus">Daci_5705</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="5" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX38333.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_5705"/>
    <dbReference type="PRIDE" id="A9BXQ7"/>
    <dbReference type="EnsemblBacteria" id="ABX38333">
        <property type="protein sequence ID" value="ABX38333"/>
        <property type="gene ID" value="Daci_5705"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_5705"/>
    <dbReference type="eggNOG" id="ENOG5032XVI">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_141512_0_0_4"/>
    <dbReference type="OMA" id="ACAWLMA"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005509">
        <property type="term" value="F:calcium ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011992">
        <property type="entry name" value="EF-hand-dom_pair"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018247">
        <property type="entry name" value="EF_Hand_1_Ca_BS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002048">
        <property type="entry name" value="EF_hand_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13202">
        <property type="entry name" value="EF-hand_5"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13833">
        <property type="entry name" value="EF-hand_8"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00054">
        <property type="entry name" value="EFh"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47473">
        <property type="entry name" value="SSF47473"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00018">
        <property type="entry name" value="EF_HAND_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50222">
        <property type="entry name" value="EF_HAND_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="2">
        <location>
            <begin position="1"/>
            <end position="34"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5002733154" evidence="2">
        <location>
            <begin position="35"/>
            <end position="154"/>
        </location>
    </feature>
    <feature type="domain" description="EF-hand" evidence="3">
        <location>
            <begin position="78"/>
            <end position="113"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="117"/>
            <end position="154"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="117"/>
            <end position="132"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="140"/>
            <end position="154"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="PROSITE" id="PS50222"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="ABX38333.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="154" mass="16477" checksum="C61170D2397409E2" modified="2008-01-15" version="1">MNRSALLRRPPLLQAAVVVLLTSAFMLPAARAQAAENAATEQATASPAPLTKGEIKAQREFKMLDFNKDGKLSRAEVALFPRLSAAFDEADTDKDGYVSYAEVQAFAVKYRAERDKAKAKAQAEEAKAAERAAAEHAAAAPAARDKKEGEGSKD</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="73" xmlns="http://uniprot.org/uniprot">
    <accession>A9BXX6</accession>
    <name>A9BXX6_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="6">Phenylalanine-4-hydroxylase</fullName>
            <ecNumber evidence="5">1.14.16.1</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="12">Phe-4-monooxygenase</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="15" type="ordered locus">Daci_1267</name>
    </gene>
    <organism evidence="15 16">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="15 16" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="16">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="16" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="16">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>(6R)-L-erythro-5,6,7,8-tetrahydrobiopterin + L-phenylalanine + O2 = (4aS,6R)-4a-hydroxy-L-erythro-5,6,7,8-tetrahydrobiopterin + L-tyrosine</text>
            <dbReference type="Rhea" id="RHEA:20273"/>
            <dbReference type="ChEBI" id="CHEBI:15379"/>
            <dbReference type="ChEBI" id="CHEBI:15642"/>
            <dbReference type="ChEBI" id="CHEBI:58095"/>
            <dbReference type="ChEBI" id="CHEBI:58315"/>
            <dbReference type="ChEBI" id="CHEBI:59560"/>
            <dbReference type="EC" id="1.14.16.1"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="2">
            <name>Fe(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29033"/>
        </cofactor>
    </comment>
    <comment type="pathway">
        <text evidence="3">Amino-acid degradation; L-phenylalanine degradation; acetoacetate and fumarate from L-phenylalanine: step 1/6.</text>
    </comment>
    <comment type="similarity">
        <text evidence="4">Belongs to the biopterin-dependent aromatic amino acid hydroxylase family.</text>
    </comment>
    <dbReference type="EC" id="1.14.16.1" evidence="5"/>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX33911.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012203197.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_1267"/>
    <dbReference type="PRIDE" id="A9BXX6"/>
    <dbReference type="EnsemblBacteria" id="ABX33911">
        <property type="protein sequence ID" value="ABX33911"/>
        <property type="gene ID" value="Daci_1267"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_1267"/>
    <dbReference type="eggNOG" id="COG3186">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_023198_1_0_4"/>
    <dbReference type="OMA" id="KQFPVAT"/>
    <dbReference type="UniPathway" id="UPA00139">
        <property type="reaction ID" value="UER00337"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005506">
        <property type="term" value="F:iron ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004505">
        <property type="term" value="F:phenylalanine 4-monooxygenase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006559">
        <property type="term" value="P:L-phenylalanine catabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniPathway"/>
    </dbReference>
    <dbReference type="CDD" id="cd03348">
        <property type="entry name" value="pro_PheOH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.800.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001273">
        <property type="entry name" value="ArAA_hydroxylase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018301">
        <property type="entry name" value="ArAA_hydroxylase_Fe/CU_BS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036951">
        <property type="entry name" value="ArAA_hydroxylase_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036329">
        <property type="entry name" value="Aro-AA_hydroxylase_C_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019774">
        <property type="entry name" value="Aromatic-AA_hydroxylase_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005960">
        <property type="entry name" value="Phe-4-hydroxylase_mono"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11473">
        <property type="entry name" value="PTHR11473"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00351">
        <property type="entry name" value="Biopterin_H"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00372">
        <property type="entry name" value="FYWHYDRXLASE"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56534">
        <property type="entry name" value="SSF56534"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01267">
        <property type="entry name" value="Phe4hydrox_mono"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00367">
        <property type="entry name" value="BH4_AAA_HYDROXYL_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51410">
        <property type="entry name" value="BH4_AAA_HYDROXYL_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="9" id="KW-0408">Iron</keyword>
    <keyword evidence="7" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="10" id="KW-0503">Monooxygenase</keyword>
    <keyword evidence="8 15" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="11" id="KW-0585">Phenylalanine catabolism</keyword>
    <keyword evidence="16" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="BH4_AAA_HYDROXYL_2" evidence="14">
        <location>
            <begin position="1"/>
            <end position="296"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="13">
        <location>
            <begin position="1"/>
            <end position="39"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001060"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00001954"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00005088"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00009712"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00011995"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00020276"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00023002"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00023004"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00023033"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="ARBA" id="ARBA00023232"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="12">
        <source>
            <dbReference type="ARBA" id="ARBA00029922"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="13">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="14">
        <source>
            <dbReference type="PROSITE" id="PS51410"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="15">
        <source>
            <dbReference type="EMBL" id="ABX33911.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="16">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="296" mass="33313" checksum="FCC33BD3ED4ADD7E" modified="2008-01-15" version="1">MMSTAATPTSSHAHAPGVAPVVYGQADRPPRGDYSRASDDYTCAQDYDAYTEADHDTYRRLYERQSALLPGLASQHFIDALPSLGAKDRIPRFEEVNERLRRATGWEIVGVPGLIPEVPFFSLLANRKFPVTDWIRKPEEFEYIVEPDVFHDLFGHVPLLFNPVIADYIQAYGQGGLKAAELGACEMLSRLYWYTIEFGLIREQGGLRAYGAGILSSSGELNYSVRSPEPQRLPLSLERAMRTLYKIDSYQHTYFVIDDLQQLFDLTAADFEPLYRQLRDQPTVAADALLPGEVAL</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="40" xmlns="http://uniprot.org/uniprot">
    <accession>A9BY20</accession>
    <name>A9BY20_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_1311</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX33955.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012203241.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_1311"/>
    <dbReference type="PRIDE" id="A9BY20"/>
    <dbReference type="EnsemblBacteria" id="ABX33955">
        <property type="protein sequence ID" value="ABX33955"/>
        <property type="gene ID" value="Daci_1311"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_1311"/>
    <dbReference type="eggNOG" id="ENOG502ZAH9">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_506833_0_0_4"/>
    <dbReference type="OMA" id="SMPTRRY"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="1">
        <location>
            <begin position="1"/>
            <end position="25"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5002732652" evidence="1">
        <location>
            <begin position="26"/>
            <end position="539"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX33955.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="539" mass="55294" checksum="2CF102DAA7DEA490" modified="2008-01-15" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="50" xmlns="http://uniprot.org/uniprot">
    <accession>A9BY51</accession>
    <name>A9BY51_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Daci_1342</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="2" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX33986.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012203272.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_1342"/>
    <dbReference type="PRIDE" id="A9BY51"/>
    <dbReference type="EnsemblBacteria" id="ABX33986">
        <property type="protein sequence ID" value="ABX33986"/>
        <property type="gene ID" value="Daci_1342"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_1342"/>
    <dbReference type="eggNOG" id="COG2050">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_060311_0_0_4"/>
    <dbReference type="OMA" id="IFYPRVF"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.160.210">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR042171">
        <property type="entry name" value="Acyl-CoA_hotdog"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029069">
        <property type="entry name" value="HotDog_dom_sf"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54637">
        <property type="entry name" value="SSF54637"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ABX33986.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="276" mass="30196" checksum="07EF8AAAB8B78735" modified="2008-01-15" version="1">MSTDIHPLDQAVALTPTGAVGHYQGQTTQDYWNMVGPYGGITAAALVQAIQQHPLCLGDPLSITVNYAAALGAGRFDIEARPVRTNRSTQHWLLTITQPDQDGDAQVVTTATAVTAVRRSTWGGTDLAMPEVPSPAVVPRVPPLGGVEWLNRYDMRFLDGIIPQTWDGRETDSLTRLWVRDEPPRALDFCALAGLADVFFPRVWLRRAQRTPAGTVSITVYFHAGREELAAAGTGHLLAQARGQEFRNGFFDQSAQLWSEAGVMLASSHQIVYFKE</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-01-19" version="40" xmlns="http://uniprot.org/uniprot">
    <accession>A9BYM3</accession>
    <name>A9BYM3_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_1926</name>
        <name evidence="3" type="ordered locus">Daci_4116</name>
    </gene>
    <organism evidence="2 4">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 4" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
            <strain evidence="2">SPH-1</strain>
        </source>
    </reference>
    <reference evidence="4" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="2" key="3">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX34566.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX36747.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012203851.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_1926"/>
    <dbReference type="EnsemblBacteria" id="ABX34566">
        <property type="protein sequence ID" value="ABX34566"/>
        <property type="gene ID" value="Daci_1926"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="ABX36747">
        <property type="protein sequence ID" value="ABX36747"/>
        <property type="gene ID" value="Daci_4116"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_1926"/>
    <dbReference type="KEGG" id="dac:Daci_4116"/>
    <dbReference type="eggNOG" id="ENOG50349U0">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_2129372_0_0_4"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="coiled-coil region" evidence="1">
        <location>
            <begin position="6"/>
            <end position="36"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX34566.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ABX36747.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="113" mass="12684" checksum="7AD31D99020B598F" modified="2008-01-15" version="1">MSTQTRETLKAEINAAQKALEAAKQAYDEFDQAAENNVFPSLEDAEALEEVLANRAFDDCQGAYNCGNDVYEQEFMVGDVVYVATLKCEYNRHDKTYYYLDGQEFSIAPKASA</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="49" xmlns="http://uniprot.org/uniprot">
    <accession>A9BYQ9</accession>
    <name>A9BYQ9_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="3">HNH endonuclease</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Daci_1962</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="4" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX34602.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_1962"/>
    <dbReference type="PRIDE" id="A9BYQ9"/>
    <dbReference type="EnsemblBacteria" id="ABX34602">
        <property type="protein sequence ID" value="ABX34602"/>
        <property type="gene ID" value="Daci_1962"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_1962"/>
    <dbReference type="HOGENOM" id="CLU_099810_3_2_4"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004519">
        <property type="term" value="F:endonuclease activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR044925">
        <property type="entry name" value="His-Me_finger_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003615">
        <property type="entry name" value="HNH_nuc"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010902">
        <property type="entry name" value="NUMOD4"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13392">
        <property type="entry name" value="HNH_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07463">
        <property type="entry name" value="NUMOD4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54060">
        <property type="entry name" value="SSF54060"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-0255">Endonuclease</keyword>
    <keyword evidence="3" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="3" id="KW-0540">Nuclease</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="NUMOD4" evidence="1">
        <location>
            <begin position="18"/>
            <end position="66"/>
        </location>
    </feature>
    <feature type="domain" description="HNHc" evidence="2">
        <location>
            <begin position="75"/>
            <end position="119"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF07463"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF13392"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ABX34602.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="190" mass="21928" checksum="341C64E0843A1EC0" modified="2008-01-15" version="1">MNSLEKLTHEDEIWSDTEYPNYAISSHGRLKRNEYVSTIAGGLNRKYKEKIFTGNIHENGYLYVSLKPHRSQAPVHELVAKAFLGDMPEKARTVNHIDGDKLNNRSSNLEWATYAENNRHARKMLLNMQHGEVCNLTKFSDNIVDAVRILYSSRRFTAKEIGGFFNMSPTHVYEISSLKSRARRSTHKEK</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="85" xmlns="http://uniprot.org/uniprot">
    <accession>A9BYU1</accession>
    <name>A9BYU1_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="4 7">6,7-dimethyl-8-ribityllumazine synthase</fullName>
            <shortName evidence="7">DMRL synthase</shortName>
            <shortName evidence="7">LS</shortName>
            <shortName evidence="7">Lumazine synthase</shortName>
            <ecNumber evidence="4 7">2.5.1.78</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="7" type="primary">ribH</name>
        <name evidence="8" type="ordered locus">Daci_2196</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="9" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="7">Catalyzes the formation of 6,7-dimethyl-8-ribityllumazine by condensation of 5-amino-6-(D-ribitylamino)uracil with 3,4-dihydroxy-2-butanone 4-phosphate. This is the penultimate step in the biosynthesis of riboflavin.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1 7">
            <text>(2S)-2-hydroxy-3-oxobutyl phosphate + 5-amino-6-(D-ribitylamino)uracil = 6,7-dimethyl-8-(1-D-ribityl)lumazine + H(+) + 2 H2O + phosphate</text>
            <dbReference type="Rhea" id="RHEA:26152"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:15934"/>
            <dbReference type="ChEBI" id="CHEBI:43474"/>
            <dbReference type="ChEBI" id="CHEBI:58201"/>
            <dbReference type="ChEBI" id="CHEBI:58830"/>
            <dbReference type="EC" id="2.5.1.78"/>
        </reaction>
    </comment>
    <comment type="pathway">
        <text evidence="2 7">Cofactor biosynthesis; riboflavin biosynthesis; riboflavin from 2-hydroxy-3-oxobutyl phosphate and 5-amino-6-(D-ribitylamino)uracil: step 1/2.</text>
    </comment>
    <comment type="similarity">
        <text evidence="3 7">Belongs to the DMRL synthase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="7">Lacks conserved residue(s) required for the propagation of feature annotation.</text>
    </comment>
    <dbReference type="EC" id="2.5.1.78" evidence="4 7"/>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX34836.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012204119.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_2196"/>
    <dbReference type="PRIDE" id="A9BYU1"/>
    <dbReference type="EnsemblBacteria" id="ABX34836">
        <property type="protein sequence ID" value="ABX34836"/>
        <property type="gene ID" value="Daci_2196"/>
    </dbReference>
    <dbReference type="GeneID" id="60686590"/>
    <dbReference type="KEGG" id="dac:Daci_2196"/>
    <dbReference type="eggNOG" id="COG0054">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_089358_0_0_4"/>
    <dbReference type="OMA" id="PHHFHEH"/>
    <dbReference type="UniPathway" id="UPA00275">
        <property type="reaction ID" value="UER00404"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009349">
        <property type="term" value="C:riboflavin synthase complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000906">
        <property type="term" value="F:6,7-dimethyl-8-ribityllumazine synthase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009231">
        <property type="term" value="P:riboflavin biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.960">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00178">
        <property type="entry name" value="Lumazine_synth"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR034964">
        <property type="entry name" value="LS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002180">
        <property type="entry name" value="LS/RS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036467">
        <property type="entry name" value="LS/RS_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR21058">
        <property type="entry name" value="PTHR21058"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00885">
        <property type="entry name" value="DMRL_synthase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52121">
        <property type="entry name" value="SSF52121"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="5 7" id="KW-0686">Riboflavin biosynthesis</keyword>
    <keyword evidence="6 7" id="KW-0808">Transferase</keyword>
    <feature type="region of interest" description="5-amino-6-(D-ribitylamino)uracil binding" evidence="7">
        <location>
            <begin position="71"/>
            <end position="73"/>
        </location>
    </feature>
    <feature type="region of interest" description="5-amino-6-(D-ribitylamino)uracil binding" evidence="7">
        <location>
            <begin position="95"/>
            <end position="97"/>
        </location>
    </feature>
    <feature type="active site" description="Proton donor" evidence="7">
        <location>
            <position position="103"/>
        </location>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <position position="37"/>
        </location>
        <ligand>
            <name>5-amino-6-(D-ribitylamino)uracil</name>
            <dbReference type="ChEBI" id="CHEBI:15934"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <position position="128"/>
        </location>
        <ligand>
            <name>5-amino-6-(D-ribitylamino)uracil</name>
            <dbReference type="ChEBI" id="CHEBI:15934"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <position position="142"/>
        </location>
        <ligand>
            <name>(2S)-2-hydroxy-3-oxobutyl phosphate</name>
            <dbReference type="ChEBI" id="CHEBI:58830"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001697"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00004917"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00007424"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00012664"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022619"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00178"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="ABX34836.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="180" mass="19289" checksum="2AF6933F0DB9557A" modified="2008-01-15" version="1">MNQTPVSLNFSAHGTASGTPWRAVAGRSRVAVICASWHTDVVHQARDSMAAELQAQGVAAQNISHFNVPGAFEIPLLAKKLADTGRFDAIIACALVVNGGIYRHEFVSSAVIDGLMRVQLDTEVPVFSAVLTPRDFHEHGDHVEFFRAHFVKKGVEVAHACLAALDQLAQVQALGQARAA</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2021-06-02" version="50" xmlns="http://uniprot.org/uniprot">
    <accession>A9BYZ1</accession>
    <name>A9BYZ1_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="8">Tripartite ATP-independent periplasmic transporter DctQ component</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="8" type="ordered locus">Daci_2246</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="9" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX34886.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012204169.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_2246"/>
    <dbReference type="EnsemblBacteria" id="ABX34886">
        <property type="protein sequence ID" value="ABX34886"/>
        <property type="gene ID" value="Daci_2246"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_2246"/>
    <dbReference type="eggNOG" id="COG4665">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_086356_2_2_4"/>
    <dbReference type="OMA" id="WNVVGRY"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007387">
        <property type="entry name" value="TRAP_DctQ"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR35011">
        <property type="entry name" value="PTHR35011"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04290">
        <property type="entry name" value="DctQ"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="6 7" id="KW-0472">Membrane</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4 7" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="5 7" id="KW-1133">Transmembrane helix</keyword>
    <keyword evidence="2" id="KW-0813">Transport</keyword>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="21"/>
            <end position="43"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="55"/>
            <end position="71"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="91"/>
            <end position="113"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="133"/>
            <end position="151"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022448"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="ABX34886.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="202" mass="22232" checksum="96EAAE35944FC708" modified="2008-01-15" version="1">MQALLKFSRGVDWLNSLVGRWLIWLILASTVISGINAIVRKVLHTSSNAYLEVQWYLFAASFLLAAGYTLLQGEHVKVDVIASRLSKRTQIWIDIFGFVFFLTPMALAILWFGTPFVIQAMQTGEMSGNAGGLVRWPVYLMIPIGFGLLLLQGMSELIKRIAFLKGLIDDPTAKKGEKTAEEDLAEALRGLAGAKDKSGQSA</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="61" xmlns="http://uniprot.org/uniprot">
    <accession>A9BZ04</accession>
    <name>A9BZ04_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="5">RND efflux system, outer membrane lipoprotein, NodT family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ordered locus">Daci_2259</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="6" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="2">Cell membrane</location>
            <topology evidence="2">Lipid-anchor</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="1 2">Belongs to the outer membrane factor (OMF) (TC 1.B.17) family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX34899.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_2259"/>
    <dbReference type="EnsemblBacteria" id="ABX34899">
        <property type="protein sequence ID" value="ABX34899"/>
        <property type="gene ID" value="Daci_2259"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_2259"/>
    <dbReference type="eggNOG" id="COG1538">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_012817_13_1_4"/>
    <dbReference type="OMA" id="ARGAWWE"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015562">
        <property type="term" value="F:efflux transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003423">
        <property type="entry name" value="OMP_efflux"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010131">
        <property type="entry name" value="RND_efflux_OM_lipoprot_NodT"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02321">
        <property type="entry name" value="OEP"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01845">
        <property type="entry name" value="outer_NodT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="2 5" id="KW-0449">Lipoprotein</keyword>
    <keyword evidence="2" id="KW-0472">Membrane</keyword>
    <keyword evidence="2" id="KW-0564">Palmitate</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0732">Signal</keyword>
    <keyword evidence="2" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="2" id="KW-1134">Transmembrane beta strand</keyword>
    <feature type="signal peptide" evidence="2">
        <location>
            <begin position="1"/>
            <end position="35"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5001436701" evidence="2">
        <location>
            <begin position="36"/>
            <end position="508"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="4">
        <location>
            <begin position="123"/>
            <end position="153"/>
        </location>
    </feature>
    <feature type="coiled-coil region" evidence="3">
        <location>
            <begin position="211"/>
            <end position="269"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00007613"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="RuleBase" id="RU362097"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="ABX34899.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="508" mass="52983" checksum="15DA34B2A9B7AF7C" modified="2008-01-15" version="1">MNRIRKPKLMQFKTLHSPAIWLAAALLAGCSTQSAYQRPALEVPAQFKEATPEAAEAGIWRPADPSRAQVPDNWWELFGDEQLNRLQQQAATGNQSIAQAAARLRAAQAAVASSQAGLFPTLGSTAGATRSRSGGASGASGTGGNTGSSGSSGNISTNYSLGLNASWELDLWGRVSGTVSASQASAQASSDDLAAARLSAQASITQTYFSLRAADASVRLLQETLQSYEQSLKLTNNRYRAGVASSADVAQAEAQYKSTQAQLIEAQTSRAQLEHALAALLGLPPAAFSLEAGAELPPPPEVPAMLSSQLLEQRPDIAAAERRVAAANAQVGVARAAFFPALTLSATAGYRGASLSNLVSAPNLFWSLGPSLALALFDGGARTAAVESARASLDLAAATYRQTVLTALQEVEDNLVTASALAREQQVQIEAVAAAQKALDVVNNQYRAGTVAYLNVLSAQTTVLSARRSLIDVRNRRLAAVNTLLKNVAGRWQPLGPASVQGPQAVAR</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="65" xmlns="http://uniprot.org/uniprot">
    <accession>A9BZ46</accession>
    <name>A9BZ46_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">HhH-GPD family protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_2508</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX35146.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012204427.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_2508"/>
    <dbReference type="PRIDE" id="A9BZ46"/>
    <dbReference type="EnsemblBacteria" id="ABX35146">
        <property type="protein sequence ID" value="ABX35146"/>
        <property type="gene ID" value="Daci_2508"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_2508"/>
    <dbReference type="eggNOG" id="COG0122">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_000445_72_5_4"/>
    <dbReference type="OMA" id="WYIWRSL"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003824">
        <property type="term" value="F:catalytic activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006284">
        <property type="term" value="P:base-excision repair"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd00056">
        <property type="entry name" value="ENDO3c"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011257">
        <property type="entry name" value="DNA_glycosylase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003265">
        <property type="entry name" value="HhH-GPD_domain"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00730">
        <property type="entry name" value="HhH-GPD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00478">
        <property type="entry name" value="ENDO3c"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48150">
        <property type="entry name" value="SSF48150"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="ENDO3c" evidence="1">
        <location>
            <begin position="112"/>
            <end position="264"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="SMART" id="SM00478"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX35146.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="269" mass="29532" checksum="6CAE55B8679607B9" modified="2008-01-15" version="1">MASAKPLDTMDFEQLPLVADLPVPEQQPAPLPIVTLGARAGSAPAAAAAAASAPKAKISLPAPPEGAPAYWAEACRQLVRRDRVMKRLIPRFAHLALQPGGDAFATLARSIVGQQISMKAAQTLWNKFARLPARMAPDLVLKLKVDDMRAVGLSARKVDYLVDLAMHFTEHRLHQDDWQGMSDEAIVAELMSIRGVGRWTAEMFLIFYLQRPNVLPLDDAGLISGISQNYFSGDPVSRSEAREVAEAWKPWCTVATWYIWRSLEPQPAA</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="56" xmlns="http://uniprot.org/uniprot">
    <accession>A9BZA8</accession>
    <name>A9BZA8_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Daci_2570</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="4" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Periplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the UPF0065 (bug) family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX35208.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012204487.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_2570"/>
    <dbReference type="PRIDE" id="A9BZA8"/>
    <dbReference type="EnsemblBacteria" id="ABX35208">
        <property type="protein sequence ID" value="ABX35208"/>
        <property type="gene ID" value="Daci_2570"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_2570"/>
    <dbReference type="eggNOG" id="COG3181">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_045683_0_0_4"/>
    <dbReference type="OMA" id="YPGFEMT"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0042597">
        <property type="term" value="C:periplasmic space"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.190.150">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005064">
        <property type="entry name" value="BUG"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR042100">
        <property type="entry name" value="Bug_dom1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006311">
        <property type="entry name" value="TAT_signal"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR42928">
        <property type="entry name" value="PTHR42928"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03401">
        <property type="entry name" value="TctC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF017082">
        <property type="entry name" value="YflP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51318">
        <property type="entry name" value="TAT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004418"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00006987"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ABX35208.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="339" mass="36264" checksum="83BE69BA550ADD76" modified="2008-01-15" version="1">MPSRDFLHHADLPPLGRRQLLAGTGAMALSGLLPAAALAQDAWPTRPIRFVVPFAPGGSSEIVARSTAAELSKTLGQNVFVDNKPGAAGNIAMQEVARADDQSTVILGHIGTLAVNPYIFDKLPYDANKDFQPVSLLAKVPSLYVVHPDVPVKNLRELIAYAKKKPGQLSYGSAGNGSAGHLAFEYLKMTAEIFMLHVPYRGTGPMMTDLMSGRLDAASVGAAALLPFIKAGKVRCIATGSTQRLPQLPDVPTVAEQGFPGFEMTQWYGMLAPSSMTRAHVDKLAAECAKAVKAPDALKRLQGDAAEPIGSTPQQFAQFIATEQTRWQKVLKRAQVKPD</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="45" xmlns="http://uniprot.org/uniprot">
    <accession>A9BZF7</accession>
    <name>A9BZF7_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_2919</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX35557.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012204767.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_2919"/>
    <dbReference type="PRIDE" id="A9BZF7"/>
    <dbReference type="EnsemblBacteria" id="ABX35557">
        <property type="protein sequence ID" value="ABX35557"/>
        <property type="gene ID" value="Daci_2919"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_2919"/>
    <dbReference type="eggNOG" id="ENOG50300PM">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_1276752_0_0_4"/>
    <dbReference type="OMA" id="TASAQGW"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="1">
        <location>
            <begin position="1"/>
            <end position="22"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5002733187" evidence="1">
        <location>
            <begin position="23"/>
            <end position="244"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX35557.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="244" mass="25295" checksum="113A3CD2F03CBBD9" modified="2008-01-15" version="1">MSAAAKKLSAATLLARHAAAGAVLTLVLAGCSSRPPAPDWALNAESASQRASTAYLEGRQRVQAMEWDKARAEVAATGRTDLAARLELMRCAAQVASLEWDDCPGYQALALDAAPAEAAYARYLQGRPRPEDIALLPELQRPVAQALLGGSASALAAVSAIKEPLPRLVAAGAALRAGAAQPQLLELGAETASAQGWRRAVMAWLLLQARAHEQAGEVHKAQAVRRRLSLLAKTASGGGASAGK</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-01-19" version="59" xmlns="http://uniprot.org/uniprot">
    <accession>A9BZH7</accession>
    <name>A9BZH7_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="11">Membrane bound O-acyl transferase MBOAT family protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="11" type="ordered locus">Daci_2939</name>
    </gene>
    <organism evidence="11 12">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="11 12" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="12">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="12" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="12">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2 9">Belongs to the membrane-bound acyltransferase family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX35577.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012204787.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_2939"/>
    <dbReference type="EnsemblBacteria" id="ABX35577">
        <property type="protein sequence ID" value="ABX35577"/>
        <property type="gene ID" value="Daci_2939"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_2939"/>
    <dbReference type="eggNOG" id="COG1696">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_025255_1_1_4"/>
    <dbReference type="OMA" id="IIWGAWH"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016746">
        <property type="term" value="F:acyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0042121">
        <property type="term" value="P:alginic acid biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR024194">
        <property type="entry name" value="Ac/AlaTfrase_AlgI/DltB"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR028362">
        <property type="entry name" value="AlgI"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004299">
        <property type="entry name" value="MBOAT_fam"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03062">
        <property type="entry name" value="MBOAT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF500217">
        <property type="entry name" value="AlgI"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF016636">
        <property type="entry name" value="AlgI_DltB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="8 9" id="KW-0012">Acyltransferase</keyword>
    <keyword evidence="3 9" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="7 9 10" id="KW-0472">Membrane</keyword>
    <keyword evidence="12" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4 9 11" id="KW-0808">Transferase</keyword>
    <keyword evidence="5 10" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="6 10" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="10">
        <location>
            <begin position="6"/>
            <end position="23"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="10">
        <location>
            <begin position="52"/>
            <end position="72"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="10">
        <location>
            <begin position="79"/>
            <end position="99"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="10">
        <location>
            <begin position="119"/>
            <end position="137"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="10">
        <location>
            <begin position="149"/>
            <end position="168"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="10">
        <location>
            <begin position="325"/>
            <end position="344"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="10">
        <location>
            <begin position="350"/>
            <end position="373"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="10">
        <location>
            <begin position="385"/>
            <end position="405"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="10">
        <location>
            <begin position="448"/>
            <end position="467"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="10">
        <location>
            <begin position="498"/>
            <end position="516"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00010323"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00023315"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="PIRNR" id="PIRNR016636"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="EMBL" id="ABX35577.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="526" mass="58480" checksum="1C2B59434A2947BB" modified="2008-01-15" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-05-25" version="67" xmlns="http://uniprot.org/uniprot">
    <accession>A9BZM6</accession>
    <name>A9BZM6_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Ankyrin</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_3296</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX35934.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012205134.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_3296"/>
    <dbReference type="EnsemblBacteria" id="ABX35934">
        <property type="protein sequence ID" value="ABX35934"/>
        <property type="gene ID" value="Daci_3296"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_3296"/>
    <dbReference type="eggNOG" id="COG0666">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_000134_18_13_4"/>
    <dbReference type="OMA" id="CKDSYGT"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.25.40.20">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002110">
        <property type="entry name" value="Ankyrin_rpt"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036770">
        <property type="entry name" value="Ankyrin_rpt-contain_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00023">
        <property type="entry name" value="Ank"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13637">
        <property type="entry name" value="Ank_4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00248">
        <property type="entry name" value="ANK"/>
        <property type="match status" value="3"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48403">
        <property type="entry name" value="SSF48403"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50088">
        <property type="entry name" value="ANK_REPEAT"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0040">ANK repeat</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="repeat" description="ANK" evidence="1">
        <location>
            <begin position="91"/>
            <end position="123"/>
        </location>
    </feature>
    <feature type="repeat" description="ANK" evidence="1">
        <location>
            <begin position="157"/>
            <end position="189"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00023"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX35934.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="254" mass="26782" checksum="AC5921C64F7B9F02" modified="2008-01-15" version="1">MHHAVSRSGAQGRHAAILTACLAAGLADVQAQEAQAVAAAAEGRDAAKAQEGVVNRPEFGPALLAAAQAGEALQVRDWLKRGAPVDVRDPQGNTPLLLAVRGNHVEVARSLLVHGANPNLKNDLQDSAYLLAGALGRLEILRMTLSYGADLQSVNRYGGTALIPACERGHVDTVQALLAAGVRADHVNRLGWTCLLEAVLLGDGGPRYQDIVRQLITAKADLSLPDKDGVTALAHARQRSQHEVERLLQEAGAR</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="56" xmlns="http://uniprot.org/uniprot">
    <accession>A9BZW0</accession>
    <name>A9BZW0_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ordered locus">Daci_3588</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="5" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Periplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the UPF0065 (bug) family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX36222.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012205422.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_3588"/>
    <dbReference type="PRIDE" id="A9BZW0"/>
    <dbReference type="EnsemblBacteria" id="ABX36222">
        <property type="protein sequence ID" value="ABX36222"/>
        <property type="gene ID" value="Daci_3588"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_3588"/>
    <dbReference type="eggNOG" id="COG3181">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_045683_0_2_4"/>
    <dbReference type="OMA" id="INRRRFC"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0042597">
        <property type="term" value="C:periplasmic space"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.190.150">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005064">
        <property type="entry name" value="BUG"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR042100">
        <property type="entry name" value="Bug_dom1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR42928">
        <property type="entry name" value="PTHR42928"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03401">
        <property type="entry name" value="TctC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF017082">
        <property type="entry name" value="YflP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="3">
        <location>
            <begin position="1"/>
            <end position="27"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5002733203" evidence="3">
        <location>
            <begin position="28"/>
            <end position="326"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004418"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00006987"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="ABX36222.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="326" mass="34185" checksum="BA79855F9A8AF8E0" modified="2008-01-15" version="1">MSINRRRFCAALPAPLAGLALPHQGLAQEAFPSKSLKIVCPFAPGGGSDFIARVASNVLNDRLGQPVVVENRPGAGGTLGTEYALRSAADGYTLLLVAGSYTVNPSLYKLRFDPVADMTPVIQLSKGAYVVCVSPRVPARNLQELLTHARENPGKLTFASAGNGSHLHIVTEYLFGMAKVKATHVPYRGTGPAVTDLLSGNVDMLVAGTEALMQHVKSGKLHALAVTTAQRLPAYPEIPSVAESGLPDYDVVAWHGLLAPKGLPPAVLSRINAALDTGLKAPALLAQLEPTGVSPAGGTPAQFGALIQSEIPRYAKVVKDNEIRAQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="61" xmlns="http://uniprot.org/uniprot">
    <accession>A9C033</accession>
    <name>A9C033_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">DSBA domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_3663</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX36295.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_3663"/>
    <dbReference type="PRIDE" id="A9C033"/>
    <dbReference type="EnsemblBacteria" id="ABX36295">
        <property type="protein sequence ID" value="ABX36295"/>
        <property type="gene ID" value="Daci_3663"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_3663"/>
    <dbReference type="eggNOG" id="COG3531">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_097497_0_0_4"/>
    <dbReference type="OMA" id="LHYIYDP"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016491">
        <property type="term" value="F:oxidoreductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001853">
        <property type="entry name" value="DSBA-like_thioredoxin_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036249">
        <property type="entry name" value="Thioredoxin-like_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01323">
        <property type="entry name" value="DSBA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52833">
        <property type="entry name" value="SSF52833"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="DSBA" evidence="1">
        <location>
            <begin position="15"/>
            <end position="188"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF01323"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX36295.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="256" mass="27291" checksum="24138EBF083782EC" modified="2008-01-15" version="1">MTTTAQPPFVLHYIFDPLCGWCYAAAPLVKAARSVPGVTLQWHGGGMLTGAHTRTITADWRGHVMPHDQRIAEMTGQPFGTAYFDGLLNDLGAVLDSEPPTTALLAAEELAGRGLDMLARQQQAHYVEGRRISDPAVLLELARDLGLDVAAFTDAFQRLSGAATQAHIAQAREWLELAQGQGFPTFALEFDHPEAEQPGQRAIQRIDIGPWLGDAQGWATQLGEWVAQVSALQGGTATPTDAPGCDADGCALPGQG</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="66" xmlns="http://uniprot.org/uniprot">
    <accession>A9C076</accession>
    <name>A9C076_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ordered locus">Daci_4011</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="6" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the IMPACT family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX36642.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_4011"/>
    <dbReference type="PRIDE" id="A9C076"/>
    <dbReference type="EnsemblBacteria" id="ABX36642">
        <property type="protein sequence ID" value="ABX36642"/>
        <property type="gene ID" value="Daci_4011"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_4011"/>
    <dbReference type="eggNOG" id="COG1739">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_083552_0_0_4"/>
    <dbReference type="OMA" id="VTVDHQR"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.230.30">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035647">
        <property type="entry name" value="EFG_III/V"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023582">
        <property type="entry name" value="Impact"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001498">
        <property type="entry name" value="Impact_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036956">
        <property type="entry name" value="Impact_N_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020568">
        <property type="entry name" value="Ribosomal_S5_D2-typ_fold"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015269">
        <property type="entry name" value="UPF0029_Impact_C"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR16301">
        <property type="entry name" value="PTHR16301"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF09186">
        <property type="entry name" value="DUF1949"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01205">
        <property type="entry name" value="UPF0029"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54211">
        <property type="entry name" value="SSF54211"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54980">
        <property type="entry name" value="SSF54980"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="UPF0029" evidence="3">
        <location>
            <begin position="35"/>
            <end position="137"/>
        </location>
    </feature>
    <feature type="domain" description="DUF1949" evidence="4">
        <location>
            <begin position="153"/>
            <end position="208"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="1"/>
            <end position="23"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00007665"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF01205"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="Pfam" id="PF09186"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="ABX36642.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="218" mass="23394" checksum="67F7AD4DC15F2F1B" modified="2008-01-15" version="1">MNPCAKPRARGDRVSLPPSMPQTLRAPAHSELIIKKSRFIGCVQPMADRASAQAVVDALWREHPGAAHVCWALLAAGQSAAVDDGEPSGTAGRPMLDVLRHQDLEGVLATVVRYFGGVKLGAGGLVRAYTDAVAQALLTAEKVTLQRMQSLRCAVPYALEGLVRREIDAAGAELLQVEHGSLVQFDLRLPQSQAEGFVSRLNESGQGRVGWMEVHPCE</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="55" xmlns="http://uniprot.org/uniprot">
    <accession>A9C093</accession>
    <name>A9C093_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">3-demethylubiquinone-9 3-methyltransferase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_4028</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX36659.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012205853.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_4028"/>
    <dbReference type="PRIDE" id="A9C093"/>
    <dbReference type="EnsemblBacteria" id="ABX36659">
        <property type="protein sequence ID" value="ABX36659"/>
        <property type="gene ID" value="Daci_4028"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_4028"/>
    <dbReference type="eggNOG" id="COG2764">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_046006_17_1_4"/>
    <dbReference type="OMA" id="LEKQMWG"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008168">
        <property type="term" value="F:methyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0032259">
        <property type="term" value="P:methylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd06588">
        <property type="entry name" value="PhnB_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.10.180.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029068">
        <property type="entry name" value="Glyas_Bleomycin-R_OHBP_Dase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR028973">
        <property type="entry name" value="PhnB-like"/>
    </dbReference>
    <dbReference type="Pfam" id="PF06983">
        <property type="entry name" value="3-dmu-9_3-mt"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54593">
        <property type="entry name" value="SSF54593"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0489">Methyltransferase</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0808">Transferase</keyword>
    <keyword evidence="2" id="KW-0830">Ubiquinone</keyword>
    <feature type="domain" description="3-dmu-9_3-mt" evidence="1">
        <location>
            <begin position="2"/>
            <end position="134"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF06983"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX36659.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="140" mass="15226" checksum="54E0F373846684D0" modified="2008-01-15" version="1">MQFIPYLNFNGNCAEAFAFYARLFGGTIVHQSTFGETPGFEQMPEAGKNLIMHAHLQIKDQALMASDATDNCGGGGYQQAQGMWISIGVDDATEGGRIFNALAEGGKVTMPFQATFWSPGFGMVTDRFNTPWMVNVRGEA</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="50" xmlns="http://uniprot.org/uniprot">
    <accession>A9C0H3</accession>
    <name>A9C0H3_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">NIPSNAP family containing protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_4415</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX37046.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012206218.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_4415"/>
    <dbReference type="PRIDE" id="A9C0H3"/>
    <dbReference type="EnsemblBacteria" id="ABX37046">
        <property type="protein sequence ID" value="ABX37046"/>
        <property type="gene ID" value="Daci_4415"/>
    </dbReference>
    <dbReference type="GeneID" id="60689042"/>
    <dbReference type="KEGG" id="dac:Daci_4415"/>
    <dbReference type="eggNOG" id="COG5470">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_149116_1_0_4"/>
    <dbReference type="OMA" id="CFIRYQI"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011008">
        <property type="entry name" value="Dimeric_a/b-barrel"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012577">
        <property type="entry name" value="NIPSNAP"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07978">
        <property type="entry name" value="NIPSNAP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54909">
        <property type="entry name" value="SSF54909"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="NIPSNAP" evidence="1">
        <location>
            <begin position="7"/>
            <end position="99"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF07978"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX37046.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="101" mass="11876" checksum="E56C1520A9AC275C" modified="2008-01-15" version="1">MITCYLRYIIDPFKAKEFEEYGKTWIPLVEKFGGKHHGYFLPSEGANNVALAMFSFPSMALYEEYRIKSMQDPECQAAFRYAEDTRCILSYERSFMRPVFG</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="78" xmlns="http://uniprot.org/uniprot">
    <accession>A9C0L2</accession>
    <name>A9C0L2_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Transcriptional regulator, LysR family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Daci_4455</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="4" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the LysR transcriptional regulatory family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX37085.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012206257.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_4455"/>
    <dbReference type="PRIDE" id="A9C0L2"/>
    <dbReference type="EnsemblBacteria" id="ABX37085">
        <property type="protein sequence ID" value="ABX37085"/>
        <property type="gene ID" value="Daci_4455"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_4455"/>
    <dbReference type="eggNOG" id="COG0583">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_039613_6_4_4"/>
    <dbReference type="OMA" id="AIWPARS"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003700">
        <property type="term" value="F:DNA-binding transcription factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005119">
        <property type="entry name" value="LysR_subst-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000847">
        <property type="entry name" value="Tscrpt_reg_HTH_LysR"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036390">
        <property type="entry name" value="WH_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00126">
        <property type="entry name" value="HTH_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03466">
        <property type="entry name" value="LysR_substrate"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00039">
        <property type="entry name" value="HTHLYSR"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46785">
        <property type="entry name" value="SSF46785"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50931">
        <property type="entry name" value="HTH_LYSR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HTH lysR-type" evidence="2">
        <location>
            <begin position="1"/>
            <end position="58"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00009437"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS50931"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ABX37085.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="295" mass="31631" checksum="40A68F60AA21DF0B" modified="2008-01-15" version="1">METRHLRYFLAVVDQGSVSRAADWLGIAQPALSQTLARMEKDLGVQLFQRSRQGALPTPAALAMLDDVRTSVARIDAAASRAREIARGSAGQLTVGLVSSALFGTLPRALRALRQQAPGVRVILREMSNAEQAEALQTGAIDIGLMHTPVAVGGRMRERQLLRERLVAAVPDEFQIGEDGQVSLAQIAEAGLVMYPQAQLPVLHAGILDALRKAGHEAHVAQEANRTLTVLACVAGGCGVALLPSWIRSMDFRGVRFCEVRDGQALPSLDLSAIWPARSTPTLADLFAHLDLGED</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="64" xmlns="http://uniprot.org/uniprot">
    <accession>A9C0M9</accession>
    <name>A9C0M9_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">NADH:flavin oxidoreductase/NADH oxidase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_4472</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX37102.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012206274.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_4472"/>
    <dbReference type="PRIDE" id="A9C0M9"/>
    <dbReference type="EnsemblBacteria" id="ABX37102">
        <property type="protein sequence ID" value="ABX37102"/>
        <property type="gene ID" value="Daci_4472"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_4472"/>
    <dbReference type="eggNOG" id="COG0654">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="eggNOG" id="COG1902">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_012153_10_0_4"/>
    <dbReference type="OMA" id="PMFTPFR"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0010181">
        <property type="term" value="F:FMN binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0050661">
        <property type="term" value="F:NADP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003959">
        <property type="term" value="F:NADPH dehydrogenase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd02932">
        <property type="entry name" value="OYE_YqiM_FMN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.20.20.70">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.50.50.60">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013785">
        <property type="entry name" value="Aldolase_TIM"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036188">
        <property type="entry name" value="FAD/NAD-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001155">
        <property type="entry name" value="OxRdtase_FMN_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR044152">
        <property type="entry name" value="YqjM-like"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43303">
        <property type="entry name" value="PTHR43303"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00724">
        <property type="entry name" value="Oxidored_FMN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51905">
        <property type="entry name" value="SSF51905"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Oxidored_FMN" evidence="1">
        <location>
            <begin position="414"/>
            <end position="743"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF00724"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX37102.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="782" mass="86784" checksum="FCD0CE8E7ADA007E" modified="2008-01-15" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="44" xmlns="http://uniprot.org/uniprot">
    <accession>A9C0N1</accession>
    <name>A9C0N1_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Daci_4474</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="2" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX37104.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012206276.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_4474"/>
    <dbReference type="PRIDE" id="A9C0N1"/>
    <dbReference type="EnsemblBacteria" id="ABX37104">
        <property type="protein sequence ID" value="ABX37104"/>
        <property type="gene ID" value="Daci_4474"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_4474"/>
    <dbReference type="eggNOG" id="ENOG50300G5">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_100597_0_0_4"/>
    <dbReference type="OMA" id="NWCATGA"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ABX37104.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="248" mass="27630" checksum="F7F0806FDF12E6AB" modified="2008-01-15" version="1">MTQQTEVRELKPGLSPFPAAADIFVADQPWLAEHLLPLISIDLGLVRPELAGTVVHMLCPVEPFEGCIGDETEAHHNAFTAPNWFALELTPDNRYRFLGNEGFFQRAPQHGGQFTKDAFACEHTDEMLASHAKASAYYAEHGRLASYSRYGKGEPMEQDYLDSLGGGIWYGNWTSHPPIPPAFQLDEAENAGMGDELEDDGIRITRDGKPFFHVANVAGYNWCATGADSILLFYEPESRTVLFTFDWT</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="86" xmlns="http://uniprot.org/uniprot">
    <accession>A9C0Q8</accession>
    <name>A9C0Q8_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Transcriptional regulator, GntR family with aminotransferase domain</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Daci_4502</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="4" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">In the C-terminal section; belongs to the class-I pyridoxal-phosphate-dependent aminotransferase family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX37131.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012206301.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="PRIDE" id="A9C0Q8"/>
    <dbReference type="EnsemblBacteria" id="ABX37131">
        <property type="protein sequence ID" value="ABX37131"/>
        <property type="gene ID" value="Daci_4502"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_4502"/>
    <dbReference type="eggNOG" id="COG1167">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_017584_0_0_4"/>
    <dbReference type="OMA" id="LLMTYQL"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003700">
        <property type="term" value="F:DNA-binding transcription factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030170">
        <property type="term" value="F:pyridoxal phosphate binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008483">
        <property type="term" value="F:transaminase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009058">
        <property type="term" value="P:biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd07377">
        <property type="entry name" value="WHTH_GntR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.640.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004839">
        <property type="entry name" value="Aminotransferase_I/II"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015424">
        <property type="entry name" value="PyrdxlP-dep_Trfase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015421">
        <property type="entry name" value="PyrdxlP-dep_Trfase_major"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000524">
        <property type="entry name" value="Tscrpt_reg_HTH_GntR"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036390">
        <property type="entry name" value="WH_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00155">
        <property type="entry name" value="Aminotran_1_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00392">
        <property type="entry name" value="GntR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00345">
        <property type="entry name" value="HTH_GNTR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46785">
        <property type="entry name" value="SSF46785"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53383">
        <property type="entry name" value="SSF53383"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50949">
        <property type="entry name" value="HTH_GNTR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-0032">Aminotransferase</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="HTH gntR-type" evidence="2">
        <location>
            <begin position="18"/>
            <end position="86"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00005384"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS50949"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ABX37131.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="460" mass="49749" checksum="CA69EDEB722868FF" modified="2008-01-15" version="1">MQDEPLPLWLPQLAVQGGPRFLQIADALQAAVADGSLKPGDRLPPQRRLAAQLDVDLTTVTRAYDEARRRQLLEGRGARGTYVAAPKVELNAVLDLSMNTPPPPAGVDLDDMLKQGLAQVLMGADAQLLMTYHLGGGSDSDRKAGARWLQPMFGDVDARQLVVCPGAQAAIAALVLALTEPGDVILTEPTSYPGLRAAAAQFGRRIIAVQADSQGIMPERLEQACRQHRPGLVYLNPTLQNPTAITLAEDRRQEIASIAKRCHVRIVEDDPYWLLADAPPPPIARFAPEQVYYISTLSKCLTPGLRVAFVLLPDPHERQRFLVALRSFALMATPLTAALATQWILDGSAGKLMEGVRKEARLRHRMARDVLAGRYSGAGDGLHVWLELPSYWSPSQLARAADSEGIAVTPAQAFATGGESVNAIRISLGSIKDRGRLQAGLQRLSHLLARLPESFSAAVV</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="44" xmlns="http://uniprot.org/uniprot">
    <accession>A9C148</accession>
    <name>A9C148_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Daci_5883</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="2" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX38511.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012207680.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_5883"/>
    <dbReference type="PRIDE" id="A9C148"/>
    <dbReference type="EnsemblBacteria" id="ABX38511">
        <property type="protein sequence ID" value="ABX38511"/>
        <property type="gene ID" value="Daci_5883"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_5883"/>
    <dbReference type="eggNOG" id="COG3572">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_102167_1_0_4"/>
    <dbReference type="OMA" id="ATRDQWQ"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ABX38511.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="205" mass="22738" checksum="053F51DF3FBA15D0" modified="2008-01-15" version="1">MTTPQPHARRAPHAPHAPRRKALAWGAACVLAPSLITMSNALHAITPTAELPAELRSALPSARLMGTAVLRFFGLRVYEARLWAAPGLLPEDYARHPFALELVYDRKLEGAAIAERSIAEMRRVGSFTEEQTRQWLDLMKQAFPDVVAKDRLLGLNDGQGDVRFFHNGRQTAQLRDADYARLFFGIWLSPQTSAPAMRTSLLGQG</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="79" xmlns="http://uniprot.org/uniprot">
    <accession>A9C165</accession>
    <name>A9C165_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Transcriptional regulator, AsnC family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ordered locus">Daci_5900</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="6" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX38528.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012207697.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_5900"/>
    <dbReference type="PRIDE" id="A9C165"/>
    <dbReference type="EnsemblBacteria" id="ABX38528">
        <property type="protein sequence ID" value="ABX38528"/>
        <property type="gene ID" value="Daci_5900"/>
    </dbReference>
    <dbReference type="GeneID" id="60690261"/>
    <dbReference type="KEGG" id="dac:Daci_5900"/>
    <dbReference type="eggNOG" id="COG1522">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_091233_0_1_4"/>
    <dbReference type="OMA" id="PITIMVQ"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043565">
        <property type="term" value="F:sequence-specific DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006355">
        <property type="term" value="P:regulation of transcription, DNA-templated"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="CDD" id="cd00090">
        <property type="entry name" value="HTH_ARSR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011991">
        <property type="entry name" value="ArsR-like_HTH"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000485">
        <property type="entry name" value="AsnC-type_HTH_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011008">
        <property type="entry name" value="Dimeric_a/b-barrel"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019888">
        <property type="entry name" value="Tscrpt_reg_AsnC-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019887">
        <property type="entry name" value="Tscrpt_reg_AsnC/Lrp_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036390">
        <property type="entry name" value="WH_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01037">
        <property type="entry name" value="AsnC_trans_reg"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13404">
        <property type="entry name" value="HTH_AsnC-type"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00033">
        <property type="entry name" value="HTHASNC"/>
    </dbReference>
    <dbReference type="SMART" id="SM00344">
        <property type="entry name" value="HTH_ASNC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46785">
        <property type="entry name" value="SSF46785"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54909">
        <property type="entry name" value="SSF54909"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50956">
        <property type="entry name" value="HTH_ASNC_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0804">Transcription</keyword>
    <keyword evidence="1" id="KW-0805">Transcription regulation</keyword>
    <feature type="domain" description="HTH asnC-type" evidence="4">
        <location>
            <begin position="8"/>
            <end position="75"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023015"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023163"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="PROSITE" id="PS50956"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="ABX38528.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="171" mass="18684" checksum="9A4C514F2273A97B" modified="2008-01-15" version="1">MTQNSIELDATDLRLLQLLQVDASRSNQALAALLQLSPPTCLRRVRRLQETGLIERQVAILQPERLAAALGHGLQAIVEVSLDRQDSDSLDSFERRAVALDAVQQCWRVSAGPDFILVVAAPDMPAYLELSRALFTGDANVRNVKSFFSVKRAKFSTAMPLPSTNPGTAAE</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="92" xmlns="http://uniprot.org/uniprot">
    <accession>A9C1A7</accession>
    <name>A9C1A7_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="10">Sodium/proline symporter</fullName>
        </recommendedName>
        <alternativeName>
            <fullName evidence="10">Proline permease</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="11" type="ordered locus">Daci_5942</name>
    </gene>
    <organism evidence="11 12">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="11 12" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="12">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="12" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="12">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="10">Catalyzes the sodium-dependent uptake of extracellular L-proline.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="8">
            <text>L-proline(in) + Na(+)(in) = L-proline(out) + Na(+)(out)</text>
            <dbReference type="Rhea" id="RHEA:28967"/>
            <dbReference type="ChEBI" id="CHEBI:29101"/>
            <dbReference type="ChEBI" id="CHEBI:60039"/>
        </reaction>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="10">Cell inner membrane</location>
            <topology evidence="10">Multi-pass membrane protein</topology>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2 9">Belongs to the sodium:solute symporter (SSF) (TC 2.A.21) family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX38570.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012207739.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_5942"/>
    <dbReference type="PRIDE" id="A9C1A7"/>
    <dbReference type="EnsemblBacteria" id="ABX38570">
        <property type="protein sequence ID" value="ABX38570"/>
        <property type="gene ID" value="Daci_5942"/>
    </dbReference>
    <dbReference type="GeneID" id="60690302"/>
    <dbReference type="KEGG" id="dac:Daci_5942"/>
    <dbReference type="eggNOG" id="COG0591">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_018808_15_2_4"/>
    <dbReference type="OMA" id="CWTDLIQ"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005298">
        <property type="term" value="F:proline:sodium symporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0031402">
        <property type="term" value="F:sodium ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015824">
        <property type="term" value="P:proline transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd11475">
        <property type="entry name" value="SLC5sbd_PutP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.1730.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038377">
        <property type="entry name" value="Na/Glc_symporter_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011851">
        <property type="entry name" value="Na/Pro_symporter"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001734">
        <property type="entry name" value="Na/solute_symporter"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018212">
        <property type="entry name" value="Na/solute_symporter_CS"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00474">
        <property type="entry name" value="SSF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR02121">
        <property type="entry name" value="Na_Pro_sym"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00813">
        <property type="entry name" value="sss"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00457">
        <property type="entry name" value="NA_SOLUT_SYMP_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50283">
        <property type="entry name" value="NA_SOLUT_SYMP_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="10" id="KW-0029">Amino-acid transport</keyword>
    <keyword evidence="10" id="KW-0997">Cell inner membrane</keyword>
    <keyword evidence="10" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="10" id="KW-0406">Ion transport</keyword>
    <keyword evidence="6 10" id="KW-0472">Membrane</keyword>
    <keyword evidence="12" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="10" id="KW-0915">Sodium</keyword>
    <keyword evidence="7 10" id="KW-0739">Sodium transport</keyword>
    <keyword evidence="4 10" id="KW-0769">Symport</keyword>
    <keyword evidence="3 10" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="5 10" id="KW-1133">Transmembrane helix</keyword>
    <keyword evidence="10" id="KW-0813">Transport</keyword>
    <feature type="transmembrane region" description="Helical" evidence="10">
        <location>
            <begin position="12"/>
            <end position="31"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="10">
        <location>
            <begin position="43"/>
            <end position="64"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="10">
        <location>
            <begin position="70"/>
            <end position="92"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="10">
        <location>
            <begin position="129"/>
            <end position="154"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="10">
        <location>
            <begin position="166"/>
            <end position="185"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="10">
        <location>
            <begin position="197"/>
            <end position="215"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="10">
        <location>
            <begin position="235"/>
            <end position="259"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="10">
        <location>
            <begin position="280"/>
            <end position="300"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="10">
        <location>
            <begin position="328"/>
            <end position="351"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="10">
        <location>
            <begin position="372"/>
            <end position="393"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="10">
        <location>
            <begin position="405"/>
            <end position="424"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="10">
        <location>
            <begin position="431"/>
            <end position="447"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="10">
        <location>
            <begin position="453"/>
            <end position="472"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00006434"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022847"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023201"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00033708"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="RuleBase" id="RU362091"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="RuleBase" id="RU366012"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="EMBL" id="ABX38570.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="500" mass="53498" checksum="59CD6D8790D0F1C5" modified="2008-01-15" version="1">MQFNWNDPTAIMFAIYLVAMLGIGAIGYFSTKNLSDYILGGRSLGSFVTALSAGASDMSGWLLMGLPGAIYLSGLSEAWIAIGLILGAYLNWRLVAARLRLYTERAGNALTLPDYLANRFEDHSNVLRIVTAVVILVFFTLYCASGVVAGARLFENMFGMPYSTALWVGALCTIAYVFIGGFLAVSWTDTIQASMMITALILAPVIAWLAVQGHLQPGQDLHAIVAAEKFDLFRGASFVGVVSLLAWGLGYFGQPHILVRFMAASSVQTIPSARRISMTWMILCLAGAVAVGFIGIPYFAANPGGAAAVNANAETVFMEITKQLFNPWISGALLAAILAAVMSTLSCQLLVCSSALTEDIYRTFLRKNASQIELVWIGRAMVLLVALIAIAIASNPDSKVLGMVSYAWAGFGAAFGPVIILSLFWSRMTRGGALAGIITGAVTVLVWKQFGWLGLYEIIPGFILAWLATVVVSRMGPAPSQSILKAHAAVESEFERIGAR</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-05-25" version="66" xmlns="http://uniprot.org/uniprot">
    <accession>A9C1J0</accession>
    <name>A9C1J0_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="7">Inner-membrane translocator</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ordered locus">Daci_6025</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="8" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX38653.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012207822.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_6025"/>
    <dbReference type="EnsemblBacteria" id="ABX38653">
        <property type="protein sequence ID" value="ABX38653"/>
        <property type="gene ID" value="Daci_6025"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_6025"/>
    <dbReference type="eggNOG" id="COG4177">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_031365_0_1_4"/>
    <dbReference type="OMA" id="SPFGMML"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015658">
        <property type="term" value="F:branched-chain amino acid transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd06581">
        <property type="entry name" value="TM_PBP1_LivM_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001851">
        <property type="entry name" value="ABC_transp_permease"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043428">
        <property type="entry name" value="LivM-like"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30482">
        <property type="entry name" value="PTHR30482"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02653">
        <property type="entry name" value="BPD_transp_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="5 6" id="KW-0472">Membrane</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 6" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="4 6" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="35"/>
            <end position="52"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="59"/>
            <end position="77"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="83"/>
            <end position="102"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="109"/>
            <end position="128"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="159"/>
            <end position="176"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="212"/>
            <end position="234"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="246"/>
            <end position="271"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="283"/>
            <end position="303"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="ABX38653.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="333" mass="35546" checksum="9F9B548D14A95A66" modified="2008-01-15" version="1">MKTMTRHSHLLLALAIVVAMPLCMQSGSLASEVLIFGLAAMGCNLLLGYTGLLSFGQGIFFGLGSYTIALLLTRWPLPMPLALLAATAMGAVGAAIVGWVAIRQRGTYFVMLTLAFAQMFYFLAYSATDITGGDNGLLDVPRPALAVAGQTLWPLATPWQYYGFVAVLFLVVFWLLRRVCDSMFGRTLLAVRDNEERAAAVGYDLRLLKLQAFVISGAVTGLAGALHAMMTGIAPLSNAEYHTSEMILVMTVIGGTGNLLASVLGAAFYVLLGDWLSTLWPRWLLLLGVVLMIVSLGLQRGLWGLGESLWALVRRKGPADAEAAAAETKGGQA</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="61" xmlns="http://uniprot.org/uniprot">
    <accession>A9C1L1</accession>
    <name>A9C1L1_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="3">RNP-1 like RNA-binding protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Daci_6046</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="4" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX38674.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012207843.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_6046"/>
    <dbReference type="PRIDE" id="A9C1L1"/>
    <dbReference type="EnsemblBacteria" id="ABX38674">
        <property type="protein sequence ID" value="ABX38674"/>
        <property type="gene ID" value="Daci_6046"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_6046"/>
    <dbReference type="eggNOG" id="COG0724">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_012062_28_1_4"/>
    <dbReference type="OMA" id="WHTTDDA"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003723">
        <property type="term" value="F:RNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.70.330">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012677">
        <property type="entry name" value="Nucleotide-bd_a/b_plait_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035979">
        <property type="entry name" value="RBD_domain_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000504">
        <property type="entry name" value="RRM_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00076">
        <property type="entry name" value="RRM_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00360">
        <property type="entry name" value="RRM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54928">
        <property type="entry name" value="SSF54928"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50102">
        <property type="entry name" value="RRM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="RRM" evidence="2">
        <location>
            <begin position="3"/>
            <end position="81"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="82"/>
            <end position="124"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS50102"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ABX38674.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="124" mass="12703" checksum="340F82735D7F1E1B" modified="2008-01-15" version="1">MGNKLYVGNLPYTFRDSDLEQAFSEFGAVNSAKVMMERDTGRSKGFGFVEMGSDAEAQAAIQGLHGQNRGGRDLVVNEARPMEPRAPRSGGFGGGFGGGGGGGGFGGGNRDGGYGGGGGRRNSY</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="62" xmlns="http://uniprot.org/uniprot">
    <accession>A9C1Z7</accession>
    <name>A9C1Z7_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="1">L-carnitine dehydratase/bile acid-inducible protein F</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Daci_2995</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="2" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX35633.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012204839.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_2995"/>
    <dbReference type="PRIDE" id="A9C1Z7"/>
    <dbReference type="EnsemblBacteria" id="ABX35633">
        <property type="protein sequence ID" value="ABX35633"/>
        <property type="gene ID" value="Daci_2995"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_2995"/>
    <dbReference type="eggNOG" id="COG1804">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_033975_2_1_4"/>
    <dbReference type="OMA" id="PYTDAHW"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003824">
        <property type="term" value="F:catalytic activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.1540.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.10540">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003673">
        <property type="entry name" value="CoA-Trfase_fam_III"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR044855">
        <property type="entry name" value="CoA-Trfase_III_dom3_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023606">
        <property type="entry name" value="CoA-Trfase_III_dom_1_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02515">
        <property type="entry name" value="CoA_transf_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF89796">
        <property type="entry name" value="SSF89796"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ABX35633.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="398" mass="43301" checksum="FF169FDCFAB676B1" modified="2008-01-15" version="1">METTVQAALTGIRVLDLSSVVFGPLASQVLADYGAEVIKIEPPAGDSTRHTGPAVEPGMAAMFMGTNRSKKSVVLDLKQQQSRQALHALLATADVFMHSMRPQKLAPLGLDPATLRERYPRLVYAGLHGFGEDGPYAGMPAYDDVIQGMSGLADLMERQTGEARYLPTIAADKTCALVAAHAVLAALFQRERSGHGCFVEVPMYETMVGFNLVEHFYGMHFSPALSGAGYPRVMAPWRKPYRTLDGHVCMMPYTDAHWQRFFAAVGQPQLALDARFASQASRTAHIAELLETAGEHVALHGTQHWLDTCQRLEIPAAPVARMDDLPADPHLQATEFFVPLQDAAMGTVHLPRSSVRMDGRQAPMGMPPRLGEHTAALLAQAGWSAERIAGLQITQQET</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="80" xmlns="http://uniprot.org/uniprot">
    <accession>A9C2S3</accession>
    <name>A9C2S3_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="8">ABC transporter related</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="8" type="ordered locus">Daci_3790</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="9" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX36422.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012205616.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_3790"/>
    <dbReference type="PRIDE" id="A9C2S3"/>
    <dbReference type="EnsemblBacteria" id="ABX36422">
        <property type="protein sequence ID" value="ABX36422"/>
        <property type="gene ID" value="Daci_3790"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_3790"/>
    <dbReference type="eggNOG" id="COG1120">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_000604_1_11_4"/>
    <dbReference type="OMA" id="PIGRTHV"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003593">
        <property type="entry name" value="AAA+_ATPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003439">
        <property type="entry name" value="ABC_transporter-like_ATP-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017871">
        <property type="entry name" value="ABC_transporter-like_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00005">
        <property type="entry name" value="ABC_tran"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00382">
        <property type="entry name" value="AAA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00211">
        <property type="entry name" value="ABC_TRANSPORTER_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50893">
        <property type="entry name" value="ABC_TRANSPORTER_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3 6" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="1" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="5" id="KW-0472">Membrane</keyword>
    <keyword evidence="2 6" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4" id="KW-1278">Translocase</keyword>
    <feature type="domain" description="ABC transporter" evidence="7">
        <location>
            <begin position="3"/>
            <end position="240"/>
        </location>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <begin position="40"/>
            <end position="47"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022967"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00434"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="PROSITE" id="PS50893"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="ABX36422.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="262" mass="28951" checksum="05F608231DC0F0A7" modified="2008-01-15" version="1">MKLQAQDLCWSADARRADARRIVDQASLALHSGECVGLIGPNGSGKSTLLRMLYRVLRPDAGCVLLDQRDIRDMTAREFAAQVSVLAQEAPQSFDFTVREAVMMGRIPHQSPWAGDSAEDLACMRQALAQVNALALEERRFSSLSGGEKQRVLVARALAQQPRLMLLDEPTNHLDIRHQLELMSLVRRLQISSIVALHDLNIAAHYCDRLYLMEQGRIVAHGTPAQVLTPTTIGQVYGVAAEVDIHAATGRLRISFIPDELL</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="44" xmlns="http://uniprot.org/uniprot">
    <accession>A9C2W7</accession>
    <name>A9C2W7_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_4140</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX36771.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012205951.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_4140"/>
    <dbReference type="PRIDE" id="A9C2W7"/>
    <dbReference type="EnsemblBacteria" id="ABX36771">
        <property type="protein sequence ID" value="ABX36771"/>
        <property type="gene ID" value="Daci_4140"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_4140"/>
    <dbReference type="eggNOG" id="ENOG502Z7W7">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_102169_0_0_4"/>
    <dbReference type="OMA" id="NHEINEH"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="coiled-coil region" evidence="1">
        <location>
            <begin position="139"/>
            <end position="166"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX36771.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="251" mass="28143" checksum="0C98698E3D484076" modified="2008-01-15" version="1">MHENKNDAPTSKVFYRPLEASIRWAGLLRYEQVILASVSSPMDLPQSLDCPRLGELRLYTDRIYDGILNGELPFGQHGITTRDTALIESPDLTVRHVDLKCWMRQHYPEQRPGFLFSRSERIIHPFISLETGQAMLVERQGLKSALEQTKRQLRELQDKHDALLKQSTVISACAQCPISDRAEATYLNIVGGLLELMLGQSPSGTPYSSFKTQEAVVSALVAHHSGAMGIAERTLNGKFATARRRLRSASR</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="46" xmlns="http://uniprot.org/uniprot">
    <accession>A9C303</accession>
    <name>A9C303_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_4176</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX36807.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_4176"/>
    <dbReference type="PRIDE" id="A9C303"/>
    <dbReference type="EnsemblBacteria" id="ABX36807">
        <property type="protein sequence ID" value="ABX36807"/>
        <property type="gene ID" value="Daci_4176"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_4176"/>
    <dbReference type="eggNOG" id="ENOG502Z7QE">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_039053_1_0_4"/>
    <dbReference type="OMA" id="WRLGDYW"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR021844">
        <property type="entry name" value="Integr_conj_element_PFL4704"/>
    </dbReference>
    <dbReference type="Pfam" id="PF11920">
        <property type="entry name" value="DUF3438"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR03749">
        <property type="entry name" value="conj_TIGR03749"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="128"/>
            <end position="157"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX36807.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="312" mass="33873" checksum="EBCC82FC2CC94263" modified="2008-01-15" version="1">MKPMKHPVLALLGLLAVAAAVVVSPAVQAVEILRWERMPLAVPLKVGQERIVFIDRNVRVGVPAGVGERLRVQSAGGAVYLRASEPIEPTRLQLQDADTGALILLDIAAEPPKDGEAELEPVRIVEGNNSTARYGDQPDGADAPHARAQEQAGTRTARRETPIPVVLTRFAAQNLYAPLRTVEALPGVMRVNLRRDLDLGTLMPTLPARAVALASWRLEDQWVTAVRLTNSSNDWISLDPRVLQGDFLTATFQHEALGPRGTPEDTTVLYLVTRGHGLAQSLLPAIHRFDPAVHLPQPKAAASDDREARHAQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2020-10-07" version="25" xmlns="http://uniprot.org/uniprot">
    <accession>A9C335</accession>
    <name>A9C335_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Daci_4517</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="2" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX37146.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="ABX37146">
        <property type="protein sequence ID" value="ABX37146"/>
        <property type="gene ID" value="Daci_4517"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_4517"/>
    <dbReference type="HOGENOM" id="CLU_2600286_0_0_4"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ABX37146.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="79" mass="8984" checksum="FCD49E4B878C8F1E" modified="2008-01-15" version="1">MYASIPSSYAIPPEQSSGHWLEQLRRSDDIHQKSGGSLIVYPVQWTRWGLPNGPDSYLYCSKVEQSHRAAFYRPALSSQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="69" xmlns="http://uniprot.org/uniprot">
    <accession>A9C340</accession>
    <name>A9C340_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="9">Porin Gram-negative type</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="9" type="ordered locus">Daci_4522</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="9 10" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="10" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX37151.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012206321.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_4522"/>
    <dbReference type="PRIDE" id="A9C340"/>
    <dbReference type="EnsemblBacteria" id="ABX37151">
        <property type="protein sequence ID" value="ABX37151"/>
        <property type="gene ID" value="Daci_4522"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_4522"/>
    <dbReference type="eggNOG" id="COG3203">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_038238_2_0_4"/>
    <dbReference type="OMA" id="IWGNAAN"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009279">
        <property type="term" value="C:cell outer membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046930">
        <property type="term" value="C:pore complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015288">
        <property type="term" value="F:porin activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0034220">
        <property type="term" value="P:ion transmembrane transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd00342">
        <property type="entry name" value="gram_neg_porins"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.160.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR033900">
        <property type="entry name" value="Gram_neg_porin_domain"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023614">
        <property type="entry name" value="Porin_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001702">
        <property type="entry name" value="Porin_Gram-ve"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002299">
        <property type="entry name" value="Porin_Neis"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13609">
        <property type="entry name" value="Porin_4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00182">
        <property type="entry name" value="ECOLNEIPORIN"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00184">
        <property type="entry name" value="NEISSPPORIN"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-0406">Ion transport</keyword>
    <keyword evidence="6" id="KW-0472">Membrane</keyword>
    <keyword evidence="5" id="KW-0626">Porin</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="7" id="KW-0732">Signal</keyword>
    <keyword evidence="3" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="2" id="KW-1134">Transmembrane beta strand</keyword>
    <keyword evidence="1" id="KW-0813">Transport</keyword>
    <feature type="signal peptide" evidence="7">
        <location>
            <begin position="1"/>
            <end position="24"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5002735332" evidence="7">
        <location>
            <begin position="25"/>
            <end position="359"/>
        </location>
    </feature>
    <feature type="domain" description="Porin_4" evidence="8">
        <location>
            <begin position="13"/>
            <end position="326"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022448"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022452"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023065"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023114"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="Pfam" id="PF13609"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="ABX37151.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="359" mass="37109" checksum="61934439DD38EFBF" modified="2008-01-15" version="1">MNTLQRGGWAVGAAALALASQVHAQAQAQAQAQTSAPPAIPSSSVTLYGVVDMAVESARTGNGGLQRLESGVIAGSRWGLRGTEDLGGGQRALYVVEAGFNGDTGASGQGGLAFGRQVFVGLGGGWGQLTAGRHYTTLHTSLASYALTGLIWGNAANYFRDGTVLRASNSLRYQSPNMGGFTVRGMYSFGEAAGSSVASLYGGSVDYAAGPWALGASWMQRRTTAVNTDRYALLGAAYDFGVARAALLLSTRHDDLPAATSGQGRFYEASVTVPMGMAGQWLLSYGAYHGQARAQSDARALSVRYDHSLSKRTKLYAGVGRIHNEAGAAFTINTASNAGPVVQAGSRPSSVVLGISHAF</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="56" xmlns="http://uniprot.org/uniprot">
    <accession>A9C3F3</accession>
    <name>A9C3F3_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="4">TOBE domain protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ordered locus">Daci_4635</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="5" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX37264.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012206434.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_4635"/>
    <dbReference type="PRIDE" id="A9C3F3"/>
    <dbReference type="EnsemblBacteria" id="ABX37264">
        <property type="protein sequence ID" value="ABX37264"/>
        <property type="gene ID" value="Daci_4635"/>
    </dbReference>
    <dbReference type="GeneID" id="60688831"/>
    <dbReference type="KEGG" id="dac:Daci_4635"/>
    <dbReference type="eggNOG" id="COG3585">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_118993_1_0_4"/>
    <dbReference type="OMA" id="KMSIRNQ"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015689">
        <property type="term" value="P:molybdate ion transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008995">
        <property type="entry name" value="Mo/tungstate-bd_C_term_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004606">
        <property type="entry name" value="Mop_domain"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005116">
        <property type="entry name" value="Transp-assoc_OB_typ1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03459">
        <property type="entry name" value="TOBE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50331">
        <property type="entry name" value="SSF50331"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00638">
        <property type="entry name" value="Mop"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51866">
        <property type="entry name" value="MOP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1 2" id="KW-0500">Molybdenum</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Mop" evidence="3">
        <location>
            <begin position="5"/>
            <end position="70"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022505"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU01213"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="PROSITE" id="PS51866"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="ABX37264.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="71" mass="7638" checksum="16664A438E1A39DD" modified="2008-01-15" version="1">MSIQAINVRNQFKGQVREIIRGDVVSEVDVQTPWGVVTSVITTRSVDELGLVVGSDVVALVKSTEVSIAKL</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="46" xmlns="http://uniprot.org/uniprot">
    <accession>A9BLG9</accession>
    <name>A9BLG9_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Daci_3823</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="2" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX36454.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012205648.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_3823"/>
    <dbReference type="PRIDE" id="A9BLG9"/>
    <dbReference type="EnsemblBacteria" id="ABX36454">
        <property type="protein sequence ID" value="ABX36454"/>
        <property type="gene ID" value="Daci_3823"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_3823"/>
    <dbReference type="eggNOG" id="COG3789">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_110701_1_0_4"/>
    <dbReference type="OMA" id="EVWILPE"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019231">
        <property type="entry name" value="DUF2170"/>
    </dbReference>
    <dbReference type="Pfam" id="PF09938">
        <property type="entry name" value="DUF2170"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ABX36454.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="222" mass="24257" checksum="D5C877F438065F19" modified="2008-01-15" version="1">MEQKTSAHYQRLHRQRLREQGLVKKEVWILPEYGAALQQLEKQMRVPGLQPESMVLIHKEGGMDNSRQAYRDIHALAGDLQQSALVQGGRLHIEVLEGADASLLVSLPEFGDLPVHVALSGDQLVVEAFLWPADQVHDRAGLNEQMLRLQKLFPFTTMALEPQAHGGEGYVMFAALHASSSEGDIIAEILTLADSVIQATEALAHYLTPVPTSASAPASAQA</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="91" xmlns="http://uniprot.org/uniprot">
    <accession>A9BLT0</accession>
    <name>A9BLT0_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="5">Sensor protein QseC</fullName>
            <ecNumber evidence="4">2.7.13.3</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="14" type="ordered locus">Daci_4238</name>
    </gene>
    <organism evidence="14 15">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="14 15" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="15">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="15" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="15">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>ATP + protein L-histidine = ADP + protein N-phospho-L-histidine.</text>
            <dbReference type="EC" id="2.7.13.3"/>
        </reaction>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="3">Cell inner membrane</location>
            <topology evidence="3">Multi-pass membrane protein</topology>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="2">Membrane</location>
            <topology evidence="2">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <dbReference type="EC" id="2.7.13.3" evidence="4"/>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX36869.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012206041.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_4238"/>
    <dbReference type="PRIDE" id="A9BLT0"/>
    <dbReference type="EnsemblBacteria" id="ABX36869">
        <property type="protein sequence ID" value="ABX36869"/>
        <property type="gene ID" value="Daci_4238"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_4238"/>
    <dbReference type="eggNOG" id="COG0642">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_000445_89_37_4"/>
    <dbReference type="OMA" id="DRMHRTL"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000155">
        <property type="term" value="F:phosphorelay sensor kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd00082">
        <property type="entry name" value="HisKA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.565.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013727">
        <property type="entry name" value="2CSK_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003660">
        <property type="entry name" value="HAMP_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003594">
        <property type="entry name" value="HATPase_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036890">
        <property type="entry name" value="HATPase_C_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005467">
        <property type="entry name" value="His_kinase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003661">
        <property type="entry name" value="HisK_dim/P"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036097">
        <property type="entry name" value="HisK_dim/P_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004358">
        <property type="entry name" value="Sig_transdc_His_kin-like_C"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08521">
        <property type="entry name" value="2CSK_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02518">
        <property type="entry name" value="HATPase_c"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00512">
        <property type="entry name" value="HisKA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00344">
        <property type="entry name" value="BCTRLSENSOR"/>
    </dbReference>
    <dbReference type="SMART" id="SM00387">
        <property type="entry name" value="HATPase_c"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00388">
        <property type="entry name" value="HisKA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47384">
        <property type="entry name" value="SSF47384"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55874">
        <property type="entry name" value="SSF55874"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50885">
        <property type="entry name" value="HAMP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50109">
        <property type="entry name" value="HIS_KIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="9 14" id="KW-0418">Kinase</keyword>
    <keyword evidence="11" id="KW-0472">Membrane</keyword>
    <keyword evidence="6" id="KW-0597">Phosphoprotein</keyword>
    <keyword evidence="15" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="7" id="KW-0808">Transferase</keyword>
    <keyword evidence="8" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="10" id="KW-1133">Transmembrane helix</keyword>
    <feature type="domain" description="HAMP" evidence="13">
        <location>
            <begin position="183"/>
            <end position="235"/>
        </location>
    </feature>
    <feature type="domain" description="Histidine kinase" evidence="12">
        <location>
            <begin position="243"/>
            <end position="498"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00000085"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00004429"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00012438"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00017234"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022553"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00022777"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="12">
        <source>
            <dbReference type="PROSITE" id="PS50109"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="13">
        <source>
            <dbReference type="PROSITE" id="PS50885"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="14">
        <source>
            <dbReference type="EMBL" id="ABX36869.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="15">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="514" mass="55636" checksum="E29D6682EC8BC526" modified="2008-01-15" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="47" xmlns="http://uniprot.org/uniprot">
    <accession>A9BMQ1</accession>
    <name>A9BMQ1_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Membrane protein-like protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_4967</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX37596.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_4967"/>
    <dbReference type="PRIDE" id="A9BMQ1"/>
    <dbReference type="EnsemblBacteria" id="ABX37596">
        <property type="protein sequence ID" value="ABX37596"/>
        <property type="gene ID" value="Daci_4967"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_4967"/>
    <dbReference type="eggNOG" id="COG3308">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_122357_0_1_4"/>
    <dbReference type="OMA" id="QWSSMLI"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018643">
        <property type="entry name" value="DUF2069_membrane"/>
    </dbReference>
    <dbReference type="Pfam" id="PF09842">
        <property type="entry name" value="DUF2069"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="31"/>
            <end position="52"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="58"/>
            <end position="76"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="83"/>
            <end position="103"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="109"/>
            <end position="130"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX37596.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="146" mass="16421" checksum="B1BB727D5F99A429" modified="2008-01-15" version="1">MFKGQDHGRYDATPMTDSISRPGADVAATRWLAVSSLMGLIVLSLAWELWLAPMRPGGSWLVLKALPLAVPLIGLLKHRMYTYRWVSLLVWIYFTEGVVRAWSDPAPGRWLALLEVFLCLMLFTACALHVRWRQRSARRAARAAGG</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="61" xmlns="http://uniprot.org/uniprot">
    <accession>A9BMZ2</accession>
    <name>A9BMZ2_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ordered locus">Daci_5058</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="6" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Periplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the UPF0065 (bug) family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX37687.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012206857.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_5058"/>
    <dbReference type="PRIDE" id="A9BMZ2"/>
    <dbReference type="EnsemblBacteria" id="ABX37687">
        <property type="protein sequence ID" value="ABX37687"/>
        <property type="gene ID" value="Daci_5058"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_5058"/>
    <dbReference type="eggNOG" id="COG3181">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_045683_1_0_4"/>
    <dbReference type="OMA" id="GWDQTGR"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0042597">
        <property type="term" value="C:periplasmic space"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.190.150">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005064">
        <property type="entry name" value="BUG"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR042100">
        <property type="entry name" value="Bug_dom1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006311">
        <property type="entry name" value="TAT_signal"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR42928">
        <property type="entry name" value="PTHR42928"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03401">
        <property type="entry name" value="TctC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF017082">
        <property type="entry name" value="YflP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51318">
        <property type="entry name" value="TAT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="4">
        <location>
            <begin position="1"/>
            <end position="44"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5002732340" evidence="4">
        <location>
            <begin position="45"/>
            <end position="358"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="3">
        <location>
            <begin position="1"/>
            <end position="22"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004418"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00006987"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="ABX37687.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="358" mass="37364" checksum="9200ADA2C216D292" modified="2008-01-15" version="1">MRLPSFSQTAADATPAADGTRQNRRQMLAQGAALAMLCSPLAHAAPPAAAPAAHAPRAAGSAQRVATSLRIVIPANAGGGWDQTGRALGAALVASGAAERVEYENVGGKGGTIGLAQFAERHGKDPDALLIGGMVMVGAVALQKPAVNMSHVQPIARLTSDYLVVAVPADSPIRNAKDLVAALRSDLAHQSFAGGSAGGVDHMFAGLLTRAAKAAPEQLVYKPFPGGAQVVEALLKGDARMGVSGYSEFSEALASGKLRAIGVSSRRSLFGLPSFREQGLDADMANWRAVFTGKQVSAARAQALLGAVEQATQHESWQRALRQNRWEPSWQAGRDFNGFLELEHTTASVMTYLLKLKS</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="43" xmlns="http://uniprot.org/uniprot">
    <accession>A9BMZ5</accession>
    <name>A9BMZ5_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Daci_5061</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="2" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX37690.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012206860.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_5061"/>
    <dbReference type="PRIDE" id="A9BMZ5"/>
    <dbReference type="EnsemblBacteria" id="ABX37690">
        <property type="protein sequence ID" value="ABX37690"/>
        <property type="gene ID" value="Daci_5061"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_5061"/>
    <dbReference type="eggNOG" id="ENOG5032TZA">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_117104_0_0_4"/>
    <dbReference type="OMA" id="QLKIERC"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ABX37690.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="174" mass="18283" checksum="AA5CF34EF800BC17" modified="2008-01-15" version="1">MHFVKTSAGQQAFKERHADLSPRLRSAFLLFDGQRSLAQVLQAVAGMGVTQDEILALVEREWLAPRDAAEPRLGVVAVAVPSVPAAPAAAASSTDSAGDAPAQSEPSLAVRYRNAYPLAVAITANLGLKGFRLNLAVEAAMGYDQLVALAPRLREAASPASYLPLHEALFGKAP</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-05-25" version="77" xmlns="http://uniprot.org/uniprot">
    <accession>A9BN11</accession>
    <name>A9BN11_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Ureidoglycolate hydrolase</fullName>
            <ecNumber evidence="5">3.5.3.19</ecNumber>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ordered locus">Daci_5077</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="6" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>(S)-ureidoglycolate = glyoxylate + urea</text>
            <dbReference type="Rhea" id="RHEA:11304"/>
            <dbReference type="ChEBI" id="CHEBI:16199"/>
            <dbReference type="ChEBI" id="CHEBI:36655"/>
            <dbReference type="ChEBI" id="CHEBI:57296"/>
            <dbReference type="EC" id="4.3.2.3"/>
        </reaction>
    </comment>
    <comment type="subunit">
        <text evidence="2">Homodimer.</text>
    </comment>
    <dbReference type="EC" id="3.5.3.19" evidence="5"/>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX37706.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_5077"/>
    <dbReference type="EnsemblBacteria" id="ABX37706">
        <property type="protein sequence ID" value="ABX37706"/>
        <property type="gene ID" value="Daci_5077"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_5077"/>
    <dbReference type="eggNOG" id="COG3194">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_070848_1_0_4"/>
    <dbReference type="OMA" id="WNIFRCS"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004848">
        <property type="term" value="F:ureidoglycolate hydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0050385">
        <property type="term" value="F:ureidoglycolate lyase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000256">
        <property type="term" value="P:allantoin catabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006144">
        <property type="term" value="P:purine nucleobase metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.120.480">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011051">
        <property type="entry name" value="RmlC_Cupin_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007247">
        <property type="entry name" value="Ureidogly_lyase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR024060">
        <property type="entry name" value="Ureidoglycolate_lyase_dom_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR21221">
        <property type="entry name" value="PTHR21221"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04115">
        <property type="entry name" value="Ureidogly_lyase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF017306">
        <property type="entry name" value="Ureidogly_hydro"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51182">
        <property type="entry name" value="SSF51182"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="5" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="4" id="KW-0456">Lyase</keyword>
    <keyword evidence="3" id="KW-0659">Purine metabolism</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001281"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00011738"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022631"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023239"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="ABX37706.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="177" mass="18917" checksum="D569374558C8D88E" modified="2008-01-15" version="1">MSETRPASLCLRAQPLTAEAFAEFGEVLDSTGHTPLLINDGMTERYHALARVDTGGSEGHGLINLFHARPYALPLRLTSMERHPLGSQAFMPLDAQPFIVVVAPLGEQVATADLRAFITNGRQGVNYRRGVWHHSLIALNAPARFIVIDRGGPGDNCDVLPIGGAEGVVLDLGSAQA</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="43" xmlns="http://uniprot.org/uniprot">
    <accession>A9BN31</accession>
    <name>A9BN31_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">PepSY domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Daci_5097</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="4" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX37726.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_5097"/>
    <dbReference type="PRIDE" id="A9BN31"/>
    <dbReference type="EnsemblBacteria" id="ABX37726">
        <property type="protein sequence ID" value="ABX37726"/>
        <property type="gene ID" value="Daci_5097"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_5097"/>
    <dbReference type="eggNOG" id="COG5591">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_129194_0_0_4"/>
    <dbReference type="OMA" id="IEWEDGL"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025711">
        <property type="entry name" value="PepSY"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13670">
        <property type="entry name" value="PepSY_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="PepSY" evidence="2">
        <location>
            <begin position="121"/>
            <end position="172"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="14"/>
            <end position="51"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF13670"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ABX37726.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="178" mass="19728" checksum="3EDD75FF811EF59F" modified="2008-01-15" version="1">MACIEQWQHAVAIQRKRRRSSRQMRPFQMHRQPNRRPNRRPSRRPSHAKENLMPSIRQLISRAARHGLTGLGIVLIATAGLAAQVQAQAAATGGPSVTVQAGEAVATTVASVRGAFQGPGLSIREIFERMEVLGYRDLREIEWEDGLYQVKGQTGDGRPVKLYVDGNNGNVLSIRARN</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="47" xmlns="http://uniprot.org/uniprot">
    <accession>A9BNE8</accession>
    <name>A9BNE8_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Recombinase domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_5214</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX37843.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012207013.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_5214"/>
    <dbReference type="PRIDE" id="A9BNE8"/>
    <dbReference type="EnsemblBacteria" id="ABX37843">
        <property type="protein sequence ID" value="ABX37843"/>
        <property type="gene ID" value="Daci_5214"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_5214"/>
    <dbReference type="eggNOG" id="COG1961">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_2080944_0_0_4"/>
    <dbReference type="OMA" id="GEWTHGQ"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000150">
        <property type="term" value="F:DNA strand exchange activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011109">
        <property type="entry name" value="DNA_bind_recombinase_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07508">
        <property type="entry name" value="Recombinase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Recombinase" evidence="1">
        <location>
            <begin position="60"/>
            <end position="100"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF07508"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX37843.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="117" mass="12458" checksum="8E0FE81893402DB0" modified="2008-01-15" version="1">MTTDKPVDQAISARTRKALSEAKARGVQLGRAGADNLRATVEKRKSTADAFAQQHEALFAELQARGLTHRAMAAELNARGIAAARGGEWTHGQVQRILNRYADLRSATPSADGSCGS</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="90" xmlns="http://uniprot.org/uniprot">
    <accession>A9BNH3</accession>
    <name>A9BNH3_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="8 13">Aspartate-semialdehyde dehydrogenase</fullName>
            <shortName evidence="13">ASA dehydrogenase</shortName>
            <shortName evidence="13">ASADH</shortName>
            <ecNumber evidence="8 13">1.2.1.11</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="13">Aspartate-beta-semialdehyde dehydrogenase</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="13" type="primary">asd</name>
        <name evidence="15" type="ordered locus">Daci_5239</name>
    </gene>
    <organism evidence="15 16">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="15 16" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="16">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="16" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="16">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="2 13">Catalyzes the NADPH-dependent formation of L-aspartate-semialdehyde (L-ASA) by the reductive dephosphorylation of L-aspartyl-4-phosphate.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1 13">
            <text>L-aspartate 4-semialdehyde + NADP(+) + phosphate = 4-phospho-L-aspartate + H(+) + NADPH</text>
            <dbReference type="Rhea" id="RHEA:24284"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:43474"/>
            <dbReference type="ChEBI" id="CHEBI:57535"/>
            <dbReference type="ChEBI" id="CHEBI:57783"/>
            <dbReference type="ChEBI" id="CHEBI:58349"/>
            <dbReference type="ChEBI" id="CHEBI:537519"/>
            <dbReference type="EC" id="1.2.1.11"/>
        </reaction>
    </comment>
    <comment type="pathway">
        <text evidence="4 13">Amino-acid biosynthesis; L-lysine biosynthesis via DAP pathway; (S)-tetrahydrodipicolinate from L-aspartate: step 2/4.</text>
    </comment>
    <comment type="pathway">
        <text evidence="3 13">Amino-acid biosynthesis; L-methionine biosynthesis via de novo pathway; L-homoserine from L-aspartate: step 2/3.</text>
    </comment>
    <comment type="pathway">
        <text evidence="5 13">Amino-acid biosynthesis; L-threonine biosynthesis; L-threonine from L-aspartate: step 2/5.</text>
    </comment>
    <comment type="subunit">
        <text evidence="7 13">Homodimer.</text>
    </comment>
    <comment type="similarity">
        <text evidence="6 13">Belongs to the aspartate-semialdehyde dehydrogenase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="13">Lacks conserved residue(s) required for the propagation of feature annotation.</text>
    </comment>
    <dbReference type="EC" id="1.2.1.11" evidence="8 13"/>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX37868.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012207038.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_5239"/>
    <dbReference type="PRIDE" id="A9BNH3"/>
    <dbReference type="EnsemblBacteria" id="ABX37868">
        <property type="protein sequence ID" value="ABX37868"/>
        <property type="gene ID" value="Daci_5239"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_5239"/>
    <dbReference type="eggNOG" id="COG0136">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_066397_0_0_4"/>
    <dbReference type="OMA" id="MFDVPDE"/>
    <dbReference type="UniPathway" id="UPA00034">
        <property type="reaction ID" value="UER00016"/>
    </dbReference>
    <dbReference type="UniPathway" id="UPA00050">
        <property type="reaction ID" value="UER00463"/>
    </dbReference>
    <dbReference type="UniPathway" id="UPA00051">
        <property type="reaction ID" value="UER00464"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004073">
        <property type="term" value="F:aspartate-semialdehyde dehydrogenase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051287">
        <property type="term" value="F:NAD binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0050661">
        <property type="term" value="F:NADP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046983">
        <property type="term" value="F:protein dimerization activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0071266">
        <property type="term" value="P:'de novo' L-methionine biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0019877">
        <property type="term" value="P:diaminopimelate biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009097">
        <property type="term" value="P:isoleucine biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009089">
        <property type="term" value="P:lysine biosynthetic process via diaminopimelate"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009088">
        <property type="term" value="P:threonine biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_02121">
        <property type="entry name" value="ASADH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000319">
        <property type="entry name" value="Asp-semialdehyde_DH_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011534">
        <property type="entry name" value="Asp_ADH_gamma-type"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012080">
        <property type="entry name" value="Asp_semialdehyde_DH"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036291">
        <property type="entry name" value="NAD(P)-bd_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000534">
        <property type="entry name" value="Semialdehyde_DH_NAD-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012280">
        <property type="entry name" value="Semialdhyde_DH_dimer_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46278:SF4">
        <property type="entry name" value="PTHR46278:SF4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01118">
        <property type="entry name" value="Semialdhyde_dh"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02774">
        <property type="entry name" value="Semialdhyde_dhC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00859">
        <property type="entry name" value="Semialdhyde_dh"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51735">
        <property type="entry name" value="SSF51735"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01745">
        <property type="entry name" value="asd_gamma"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01103">
        <property type="entry name" value="ASD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="13" id="KW-0028">Amino-acid biosynthesis</keyword>
    <keyword evidence="10 13" id="KW-0220">Diaminopimelate biosynthesis</keyword>
    <keyword evidence="11 13" id="KW-0457">Lysine biosynthesis</keyword>
    <keyword evidence="12 13" id="KW-0486">Methionine biosynthesis</keyword>
    <keyword evidence="13" id="KW-0521">NADP</keyword>
    <keyword evidence="13 15" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="16" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="9 13" id="KW-0791">Threonine biosynthesis</keyword>
    <feature type="domain" description="Semialdhyde_dh" evidence="14">
        <location>
            <begin position="5"/>
            <end position="124"/>
        </location>
    </feature>
    <feature type="active site" description="Acyl-thioester intermediate" evidence="13">
        <location>
            <position position="137"/>
        </location>
    </feature>
    <feature type="active site" description="Proton acceptor" evidence="13">
        <location>
            <position position="275"/>
        </location>
    </feature>
    <feature type="binding site" evidence="13">
        <location>
            <begin position="12"/>
            <end position="15"/>
        </location>
        <ligand>
            <name>NADP(+)</name>
            <dbReference type="ChEBI" id="CHEBI:58349"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="13">
        <location>
            <position position="75"/>
        </location>
        <ligand>
            <name>NADP(+)</name>
            <dbReference type="ChEBI" id="CHEBI:58349"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="13">
        <location>
            <position position="104"/>
        </location>
        <ligand>
            <name>phosphate</name>
            <dbReference type="ChEBI" id="CHEBI:43474"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="13">
        <location>
            <position position="164"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="13">
        <location>
            <begin position="167"/>
            <end position="168"/>
        </location>
        <ligand>
            <name>NADP(+)</name>
            <dbReference type="ChEBI" id="CHEBI:58349"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="13">
        <location>
            <position position="242"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="13">
        <location>
            <position position="245"/>
        </location>
        <ligand>
            <name>phosphate</name>
            <dbReference type="ChEBI" id="CHEBI:43474"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="13">
        <location>
            <position position="268"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="13">
        <location>
            <position position="351"/>
        </location>
        <ligand>
            <name>NADP(+)</name>
            <dbReference type="ChEBI" id="CHEBI:58349"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001636"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00002492"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00005021"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00005076"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00005097"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00010584"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00011738"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00013120"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00022697"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00022915"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="ARBA" id="ARBA00023154"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="12">
        <source>
            <dbReference type="ARBA" id="ARBA00023167"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="13">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_02121"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="14">
        <source>
            <dbReference type="SMART" id="SM00859"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="15">
        <source>
            <dbReference type="EMBL" id="ABX37868.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="16">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="370" mass="39635" checksum="C5285C2B874E18AF" modified="2008-01-15" version="1">MSKQLVGLVGWRGMVGSVLMDRMQAEGDFDLIEPVFFSTSNAGGKAPAMAKTHTELRNANDIAELSKCDIIITCQGGDYTKEVFPQLRASGWNGHWIDAASSLRMEGDAVIVLDPVNEGLIQSKLAAGGKNWIGGNCTNSILLMGLGGLFKAGLVEWVSSMTYQAASGGGANHMRELLKGMGVVHAAVADELATPASAILDIDRKVAQTIRTDVPTEFFGAPLAGGLIPWIDAQLDNGQSKEEWKGQAEVNKILGTEQTIPVDGLCVRIGAMRCHSLALTLKLKKDLPLQELEAIIKSGNPWVKWVPNDRAITVKELTPAAITGGLEVGVGRVRKLNMGPEYLSAFVIGDQLLWGAAEPLRRMLRILLAA</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="70" xmlns="http://uniprot.org/uniprot">
    <accession>A9BNI1</accession>
    <name>A9BNI1_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Peptidase S16 lon domain protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_5247</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX37876.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012207046.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_5247"/>
    <dbReference type="PRIDE" id="A9BNI1"/>
    <dbReference type="EnsemblBacteria" id="ABX37876">
        <property type="protein sequence ID" value="ABX37876"/>
        <property type="gene ID" value="Daci_5247"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_5247"/>
    <dbReference type="eggNOG" id="COG2802">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_048359_3_0_4"/>
    <dbReference type="OMA" id="ANRWCEL"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.30.130.40">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003111">
        <property type="entry name" value="Lon_prtase_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR046336">
        <property type="entry name" value="Lon_prtase_N_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015947">
        <property type="entry name" value="PUA-like_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02190">
        <property type="entry name" value="LON_substr_bdg"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00464">
        <property type="entry name" value="LON"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF88697">
        <property type="entry name" value="SSF88697"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51787">
        <property type="entry name" value="LON_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Lon N-terminal" evidence="1">
        <location>
            <begin position="10"/>
            <end position="206"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS51787"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX37876.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="224" mass="24126" checksum="F2E1E15CC1346E6D" modified="2008-01-15" version="1">MTAPTALHSLPLFPLGSVLFPQGLLSLRVFEVRYLDMIRKCERTGAPFGVVALQAGSEVRKAGAAAEQLHAVGTLARIVQLQQPQPGLLHLQCEGTQRFRMQEHRQLPHGLWVADVQMLPADAAVPIPGHLLATAQALAQVLMQLHARSTDADHARLPSAEQMGDCGWVANRWTELLPMPVSIKQQLMALDSPLVRLELVADVLERSGIGHAQGPAPGSPSAGH</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="80" xmlns="http://uniprot.org/uniprot">
    <accession>A9BNJ2</accession>
    <name>A9BNJ2_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">Pyridoxine 5'-phosphate synthase</fullName>
            <shortName evidence="2">PNP synthase</shortName>
            <ecNumber evidence="2">2.6.99.2</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="primary">pdxJ</name>
        <name evidence="3" type="ordered locus">Daci_5258</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="4" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="2">Catalyzes the complicated ring closure reaction between the two acyclic compounds 1-deoxy-D-xylulose-5-phosphate (DXP) and 3-amino-2-oxopropyl phosphate (1-amino-acetone-3-phosphate or AAP) to form pyridoxine 5'-phosphate (PNP) and inorganic phosphate.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="2">
            <text>1-deoxy-D-xylulose 5-phosphate + 3-amino-2-oxopropyl phosphate = H(+) + 2 H2O + phosphate + pyridoxine 5'-phosphate</text>
            <dbReference type="Rhea" id="RHEA:15265"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:43474"/>
            <dbReference type="ChEBI" id="CHEBI:57279"/>
            <dbReference type="ChEBI" id="CHEBI:57792"/>
            <dbReference type="ChEBI" id="CHEBI:58589"/>
            <dbReference type="EC" id="2.6.99.2"/>
        </reaction>
    </comment>
    <comment type="pathway">
        <text evidence="2">Cofactor biosynthesis; pyridoxine 5'-phosphate biosynthesis; pyridoxine 5'-phosphate from D-erythrose 4-phosphate: step 5/5.</text>
    </comment>
    <comment type="subunit">
        <text evidence="2">Homooctamer; tetramer of dimers.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="2">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the PNP synthase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="2">Lacks conserved residue(s) required for the propagation of feature annotation.</text>
    </comment>
    <dbReference type="EC" id="2.6.99.2" evidence="2"/>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX37887.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012207057.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_5258"/>
    <dbReference type="PRIDE" id="A9BNJ2"/>
    <dbReference type="EnsemblBacteria" id="ABX37887">
        <property type="protein sequence ID" value="ABX37887"/>
        <property type="gene ID" value="Daci_5258"/>
    </dbReference>
    <dbReference type="GeneID" id="60689602"/>
    <dbReference type="KEGG" id="dac:Daci_5258"/>
    <dbReference type="eggNOG" id="COG0854">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_074563_1_0_4"/>
    <dbReference type="OMA" id="SNAGWDT"/>
    <dbReference type="UniPathway" id="UPA00244">
        <property type="reaction ID" value="UER00313"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0033856">
        <property type="term" value="F:pyridoxine 5'-phosphate synthase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008615">
        <property type="term" value="P:pyridoxine biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd00003">
        <property type="entry name" value="PNPsynthase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.20.20.70">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00279">
        <property type="entry name" value="PdxJ"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013785">
        <property type="entry name" value="Aldolase_TIM"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004569">
        <property type="entry name" value="PyrdxlP_synth_PdxJ"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036130">
        <property type="entry name" value="Pyridoxine-5'_phos_synth"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30456">
        <property type="entry name" value="PTHR30456"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03740">
        <property type="entry name" value="PdxJ"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF63892">
        <property type="entry name" value="SSF63892"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00559">
        <property type="entry name" value="pdxJ"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="1 2" id="KW-0664">Pyridoxine biosynthesis</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0808">Transferase</keyword>
    <feature type="region of interest" description="3-amino-2-oxopropyl phosphate binding" evidence="2">
        <location>
            <begin position="226"/>
            <end position="227"/>
        </location>
    </feature>
    <feature type="active site" description="Proton acceptor" evidence="2">
        <location>
            <position position="51"/>
        </location>
    </feature>
    <feature type="active site" description="Proton acceptor" evidence="2">
        <location>
            <position position="82"/>
        </location>
    </feature>
    <feature type="active site" description="Proton donor" evidence="2">
        <location>
            <position position="203"/>
        </location>
    </feature>
    <feature type="binding site" evidence="2">
        <location>
            <position position="15"/>
        </location>
        <ligand>
            <name>3-amino-2-oxopropyl phosphate</name>
            <dbReference type="ChEBI" id="CHEBI:57279"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="2">
        <location>
            <position position="26"/>
        </location>
        <ligand>
            <name>3-amino-2-oxopropyl phosphate</name>
            <dbReference type="ChEBI" id="CHEBI:57279"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="2">
        <location>
            <position position="53"/>
        </location>
        <ligand>
            <name>1-deoxy-D-xylulose 5-phosphate</name>
            <dbReference type="ChEBI" id="CHEBI:57792"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="2">
        <location>
            <position position="58"/>
        </location>
        <ligand>
            <name>1-deoxy-D-xylulose 5-phosphate</name>
            <dbReference type="ChEBI" id="CHEBI:57792"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="2">
        <location>
            <position position="112"/>
        </location>
        <ligand>
            <name>1-deoxy-D-xylulose 5-phosphate</name>
            <dbReference type="ChEBI" id="CHEBI:57792"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="2">
        <location>
            <position position="204"/>
        </location>
        <ligand>
            <name>3-amino-2-oxopropyl phosphate</name>
            <dbReference type="ChEBI" id="CHEBI:57279"/>
        </ligand>
    </feature>
    <feature type="site" description="Transition state stabilizer" evidence="2">
        <location>
            <position position="163"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023096"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00279"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ABX37887.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="257" mass="28075" checksum="7275043407A55321" modified="2008-01-15" version="1">MNLSHASQRTALSVNVNKVALLRNTRHLGIPSVTRAARICLEAGAQGITIHPRPDQRHIRSEDVYELQALMKQWPQAEFNIEGNPTQNLMDFIRDTRPHQATFVPDSEDQFTSDHGWNFPQDAERLKPLIAECRQLGVRVSLFMDPVPAQMAAARAVGADRVELYTEPYAAAWGTADQEAQLQAYAAAAQAALDAGLGINAGHDLSRDNLAAFVARVPGLLEVSIGHALIADALELGYAETVRAYQQCIDQGMAARA</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="74" xmlns="http://uniprot.org/uniprot">
    <accession>A9BNL0</accession>
    <name>A9BNL0_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">7-methyl-GTP pyrophosphatase</fullName>
            <shortName evidence="3">m(7)GTP pyrophosphatase</shortName>
            <ecNumber evidence="3">3.6.1.-</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="4" type="ordered locus">Daci_5276</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="5" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="3">Nucleoside triphosphate pyrophosphatase that hydrolyzes 7-methyl-GTP (m(7)GTP). May have a dual role in cell division arrest and in preventing the incorporation of modified nucleotides into cellular nucleic acids.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="3">
            <text>H2O + N(7)-methyl-GTP = diphosphate + H(+) + N(7)-methyl-GMP</text>
            <dbReference type="Rhea" id="RHEA:58744"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:33019"/>
            <dbReference type="ChEBI" id="CHEBI:58285"/>
            <dbReference type="ChEBI" id="CHEBI:87133"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="3">
            <name>a divalent metal cation</name>
            <dbReference type="ChEBI" id="CHEBI:60240"/>
        </cofactor>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="3">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="3">Belongs to the Maf family. YceF subfamily.</text>
    </comment>
    <comment type="caution">
        <text evidence="3">Lacks conserved residue(s) required for the propagation of feature annotation.</text>
    </comment>
    <dbReference type="EC" id="3.6.1.-" evidence="3"/>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX37905.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012207074.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_5276"/>
    <dbReference type="PRIDE" id="A9BNL0"/>
    <dbReference type="EnsemblBacteria" id="ABX37905">
        <property type="protein sequence ID" value="ABX37905"/>
        <property type="gene ID" value="Daci_5276"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_5276"/>
    <dbReference type="eggNOG" id="COG0424">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_040416_1_0_4"/>
    <dbReference type="OMA" id="CAGSFKA"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0047429">
        <property type="term" value="F:nucleoside-triphosphate diphosphatase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009117">
        <property type="term" value="P:nucleotide metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd00555">
        <property type="entry name" value="Maf"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.950.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00528">
        <property type="entry name" value="Maf"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029001">
        <property type="entry name" value="ITPase-like_fam"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003697">
        <property type="entry name" value="Maf-like"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43213">
        <property type="entry name" value="PTHR43213"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02545">
        <property type="entry name" value="Maf"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF006305">
        <property type="entry name" value="Maf"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52972">
        <property type="entry name" value="SSF52972"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00172">
        <property type="entry name" value="maf"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="1 3" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="2 3" id="KW-0546">Nucleotide metabolism</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="active site" description="Proton acceptor" evidence="3">
        <location>
            <position position="83"/>
        </location>
    </feature>
    <feature type="site" description="Important for substrate specificity" evidence="3">
        <location>
            <position position="26"/>
        </location>
    </feature>
    <feature type="site" description="Important for substrate specificity" evidence="3">
        <location>
            <position position="84"/>
        </location>
    </feature>
    <feature type="site" description="Important for substrate specificity" evidence="3">
        <location>
            <position position="168"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023080"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00528"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="ABX37905.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="206" mass="22137" checksum="1C7CCCCD1829BD18" modified="2008-01-15" version="1">MQAPHPALAQAPGLARPLILGSTSRYRRELLERLRLPFQTVSPEVDETPLAGETPHALSLRLALAKAQAVAALHPGAVVIGSDQVPELDGLPLSKPGNHERATEQLRQMSGRQMNFHTAVSVVCQEIGFSETDVVTVQVRFRDLNDAEIERYLRAEQPYDCAGSAKSEGLGIALLDAIVSDDPTALIGLPLIRTCQLLRAAGAVLP</sequence>
</entry>
<entry dataset="Swiss-Prot" created="2009-04-14" modified="2022-08-03" version="55" xmlns="http://uniprot.org/uniprot">
    <accession>A9BNL7</accession>
    <name>Y5283_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">UPF0246 protein Daci_5283</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name type="ordered locus">Daci_5283</name>
    </gene>
    <organism>
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference key="1">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain>DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the UPF0246 family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX37912.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012207081.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A9BNL7"/>
    <dbReference type="SMR" id="A9BNL7"/>
    <dbReference type="STRING" id="398578.Daci_5283"/>
    <dbReference type="PRIDE" id="A9BNL7"/>
    <dbReference type="EnsemblBacteria" id="ABX37912">
        <property type="protein sequence ID" value="ABX37912"/>
        <property type="gene ID" value="Daci_5283"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_5283"/>
    <dbReference type="eggNOG" id="COG3022">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_061989_0_0_4"/>
    <dbReference type="OMA" id="WKNGQYK"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00652">
        <property type="entry name" value="UPF0246"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005583">
        <property type="entry name" value="YaaA"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30283">
        <property type="entry name" value="PTHR30283"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03883">
        <property type="entry name" value="H2O2_YaaD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword id="KW-1185">Reference proteome</keyword>
    <feature type="chain" id="PRO_1000131110" description="UPF0246 protein Daci_5283">
        <location>
            <begin position="1"/>
            <end position="261"/>
        </location>
    </feature>
    <evidence type="ECO:0000255" key="1">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00652"/>
        </source>
    </evidence>
    <sequence length="261" mass="29393" checksum="9D2CD1853100C19D" modified="2008-01-15" version="1">MLLLLSPAKSLDYDTPLPPKLPHTLPVFSEQPLELIEVLRRQSPQQLSELMGISDKLAALNVARYEAFSPRFTATNARQALLAFNGDVYEGLQARSLDAEDLDWAQQHLAILSGLYGVLRPLDRMQPYRLEMGTRLETAHGSNLYQFWGSRIAEHLNQRAARQPAGERVIVNLASQEYFKSVDLKHLKPPVVECAFEDYKNGAYKIISFHAKRARGLMARFAIQRRARSAAELEAFDLEGYALAPASSTPARLVFRRKTAD</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="92" xmlns="http://uniprot.org/uniprot">
    <accession>A9BNR1</accession>
    <name>A9BNR1_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">Homoserine kinase</fullName>
            <shortName evidence="3">HK</shortName>
            <shortName evidence="3">HSK</shortName>
            <ecNumber evidence="3">2.7.1.39</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="primary">thrB</name>
        <name evidence="5" type="ordered locus">Daci_5327</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="6" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="3">
            <text>ATP + L-homoserine = ADP + H(+) + O-phospho-L-homoserine</text>
            <dbReference type="Rhea" id="RHEA:13985"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:57476"/>
            <dbReference type="ChEBI" id="CHEBI:57590"/>
            <dbReference type="ChEBI" id="CHEBI:456216"/>
            <dbReference type="EC" id="2.7.1.39"/>
        </reaction>
    </comment>
    <comment type="pathway">
        <text evidence="3">Amino-acid biosynthesis; L-threonine biosynthesis; L-threonine from L-aspartate: step 4/5.</text>
    </comment>
    <comment type="similarity">
        <text evidence="3">Belongs to the pseudomonas-type ThrB family.</text>
    </comment>
    <dbReference type="EC" id="2.7.1.39" evidence="3"/>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX37956.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012207125.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_5327"/>
    <dbReference type="PRIDE" id="A9BNR1"/>
    <dbReference type="EnsemblBacteria" id="ABX37956">
        <property type="protein sequence ID" value="ABX37956"/>
        <property type="gene ID" value="Daci_5327"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_5327"/>
    <dbReference type="eggNOG" id="COG2334">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_053300_0_0_4"/>
    <dbReference type="OMA" id="DPTHFER"/>
    <dbReference type="UniPathway" id="UPA00050">
        <property type="reaction ID" value="UER00064"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004413">
        <property type="term" value="F:homoserine kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016310">
        <property type="term" value="P:phosphorylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009088">
        <property type="term" value="P:threonine biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd05153">
        <property type="entry name" value="HomoserineK_II"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00301">
        <property type="entry name" value="Homoser_kinase_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002575">
        <property type="entry name" value="Aminoglycoside_PTrfase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005280">
        <property type="entry name" value="Homoserine_kinase_II"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011009">
        <property type="entry name" value="Kinase-like_dom_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01636">
        <property type="entry name" value="APH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56112">
        <property type="entry name" value="SSF56112"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00938">
        <property type="entry name" value="thrB_alt"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="1 3" id="KW-0028">Amino-acid biosynthesis</keyword>
    <keyword evidence="3" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="3 5" id="KW-0418">Kinase</keyword>
    <keyword evidence="3" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 3" id="KW-0791">Threonine biosynthesis</keyword>
    <keyword evidence="3 5" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="APH" evidence="4">
        <location>
            <begin position="27"/>
            <end position="258"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022605"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022697"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00301"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="Pfam" id="PF01636"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="ABX37956.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="318" mass="35884" checksum="535943EF5B25AAA5" modified="2008-01-15" version="1">MAVFTEVSDKDARELLRRMSLGSFKELRGIQGGIENTNYFLTTEQGEWVLTLFERLTAEQLPFYLYLMKHLAQAGIPVPDPQAETRSGDILLSVCGKPASIVNRLPGKSELAPQPAHCAAVGEMLARMHLAGRDYDRQQPNLRSLPWWNETVPTVIPHIDAPTADLLRSELAFQNHVAASPAYAALPRGPVHADLFRDNVMFDGERLTGFFDFYFAGVDSWLFDLAVCLNDWCIEHANGAHDATKARAMIDAYQSVRPLTAAERELFNPMLRAGALRFWISRLWDFHLPREASMLVPHDPTHFERVLRQRLAHPVALD</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="58" xmlns="http://uniprot.org/uniprot">
    <accession>A9BP27</accession>
    <name>A9BP27_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ordered locus">Daci_5443</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="5" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Periplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the UPF0065 (bug) family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX38072.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012207241.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_5443"/>
    <dbReference type="PRIDE" id="A9BP27"/>
    <dbReference type="EnsemblBacteria" id="ABX38072">
        <property type="protein sequence ID" value="ABX38072"/>
        <property type="gene ID" value="Daci_5443"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_5443"/>
    <dbReference type="eggNOG" id="COG3181">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_045683_0_0_4"/>
    <dbReference type="OMA" id="FVVPNRV"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0042597">
        <property type="term" value="C:periplasmic space"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.190.150">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005064">
        <property type="entry name" value="BUG"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR042100">
        <property type="entry name" value="Bug_dom1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006311">
        <property type="entry name" value="TAT_signal"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR42928">
        <property type="entry name" value="PTHR42928"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03401">
        <property type="entry name" value="TctC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF017082">
        <property type="entry name" value="YflP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51318">
        <property type="entry name" value="TAT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="3">
        <location>
            <begin position="1"/>
            <end position="34"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5002732370" evidence="3">
        <location>
            <begin position="35"/>
            <end position="337"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004418"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00006987"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="ABX38072.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="337" mass="35050" checksum="90D4338BD9E94AE3" modified="2008-01-15" version="1">MESSRRGCLRAALACAASASLGAALGTASPIAFAQPAGGAYPSKPLRMVIPYPAGGGTDIIGRIIAQQLSQAWGQPVVVENRPGSSGIIGGDVVAKSAPDGYTLLLGITAMIQSPALYAKMPYDVLKDFAPVSQVALSSDLFVVPRDVPATTLQEFIALVKAHPGKYSNGNYGNGTSSHMHGELLRARAGLDLALIPYKGAAPLVNDVLGGQLSSAFIDVSSANAHLKSDKIRILAITGMQRHPALPEVPTFAELGLAGFEANGWFATFVAAGTPRPIVDKLSAEVRRIVASPELSGRLAAMGLRPVGGTPEELSAAMARDLPRWARIVKDAGIRLE</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="90" xmlns="http://uniprot.org/uniprot">
    <accession>A9BP45</accession>
    <name>A9BP45_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="6">Ubiquinone/menaquinone biosynthesis C-methyltransferase UbiE</fullName>
            <ecNumber evidence="6">2.1.1.163</ecNumber>
            <ecNumber evidence="6">2.1.1.201</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="6">2-methoxy-6-polyprenyl-1,4-benzoquinol methylase</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="6">Demethylmenaquinone methyltransferase</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="6" type="primary">ubiE</name>
        <name evidence="7" type="ordered locus">Daci_5461</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="8" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="6">Methyltransferase required for the conversion of demethylmenaquinol (DMKH2) to menaquinol (MKH2) and the conversion of 2-polyprenyl-6-methoxy-1,4-benzoquinol (DDMQH2) to 2-polyprenyl-3-methyl-6-methoxy-1,4-benzoquinol (DMQH2).</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="6">
            <text>a 2-demethylmenaquinol + S-adenosyl-L-methionine = a menaquinol + H(+) + S-adenosyl-L-homocysteine</text>
            <dbReference type="Rhea" id="RHEA:42640"/>
            <dbReference type="Rhea" id="RHEA-COMP:9539"/>
            <dbReference type="Rhea" id="RHEA-COMP:9563"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:18151"/>
            <dbReference type="ChEBI" id="CHEBI:55437"/>
            <dbReference type="ChEBI" id="CHEBI:57856"/>
            <dbReference type="ChEBI" id="CHEBI:59789"/>
            <dbReference type="EC" id="2.1.1.163"/>
        </reaction>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="6">
            <text>a 2-methoxy-6-all-trans-polyprenyl-1,4-benzoquinol + S-adenosyl-L-methionine = a 6-methoxy-3-methyl-2-all-trans-polyprenyl-1,4-benzoquinol + H(+) + S-adenosyl-L-homocysteine</text>
            <dbReference type="Rhea" id="RHEA:28286"/>
            <dbReference type="Rhea" id="RHEA-COMP:10858"/>
            <dbReference type="Rhea" id="RHEA-COMP:10859"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:57856"/>
            <dbReference type="ChEBI" id="CHEBI:59789"/>
            <dbReference type="ChEBI" id="CHEBI:84166"/>
            <dbReference type="ChEBI" id="CHEBI:84167"/>
            <dbReference type="EC" id="2.1.1.201"/>
        </reaction>
    </comment>
    <comment type="pathway">
        <text evidence="6">Cofactor biosynthesis; ubiquinone biosynthesis.</text>
    </comment>
    <comment type="pathway">
        <text evidence="6">Quinol/quinone metabolism; menaquinone biosynthesis; menaquinol from 1,4-dihydroxy-2-naphthoate: step 2/2.</text>
    </comment>
    <comment type="similarity">
        <text evidence="6">Belongs to the class I-like SAM-binding methyltransferase superfamily. MenG/UbiE family.</text>
    </comment>
    <comment type="caution">
        <text evidence="6">Lacks conserved residue(s) required for the propagation of feature annotation.</text>
    </comment>
    <dbReference type="EC" id="2.1.1.163" evidence="6"/>
    <dbReference type="EC" id="2.1.1.201" evidence="6"/>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX38090.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012207259.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_5461"/>
    <dbReference type="PRIDE" id="A9BP45"/>
    <dbReference type="EnsemblBacteria" id="ABX38090">
        <property type="protein sequence ID" value="ABX38090"/>
        <property type="gene ID" value="Daci_5461"/>
    </dbReference>
    <dbReference type="GeneID" id="60689812"/>
    <dbReference type="KEGG" id="dac:Daci_5461"/>
    <dbReference type="eggNOG" id="COG2226">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_037990_0_0_4"/>
    <dbReference type="OMA" id="VRNFENL"/>
    <dbReference type="UniPathway" id="UPA00079">
        <property type="reaction ID" value="UER00169"/>
    </dbReference>
    <dbReference type="UniPathway" id="UPA00232"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043333">
        <property type="term" value="F:2-octaprenyl-6-methoxy-1,4-benzoquinone methylase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043770">
        <property type="term" value="F:demethylmenaquinone methyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0102094">
        <property type="term" value="F:S-adenosylmethionine:2-demethylmenaquinol methyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0102955">
        <property type="term" value="F:S-adenosylmethionine:2-demethylmenaquinol-7 methyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0102027">
        <property type="term" value="F:S-adenosylmethionine:2-demethylquinol-8 methyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009060">
        <property type="term" value="P:aerobic respiration"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009234">
        <property type="term" value="P:menaquinone biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0032259">
        <property type="term" value="P:methylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006744">
        <property type="term" value="P:ubiquinone biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniPathway"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.150">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01813">
        <property type="entry name" value="MenG_UbiE_methyltr"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029063">
        <property type="entry name" value="SAM-dependent_MTases_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004033">
        <property type="entry name" value="UbiE/COQ5_MeTrFase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023576">
        <property type="entry name" value="UbiE/COQ5_MeTrFase_CS"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01209">
        <property type="entry name" value="Ubie_methyltran"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53335">
        <property type="entry name" value="SSF53335"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01934">
        <property type="entry name" value="MenG_MenH_UbiE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51608">
        <property type="entry name" value="SAM_MT_UBIE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01183">
        <property type="entry name" value="UBIE_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01184">
        <property type="entry name" value="UBIE_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="1 6" id="KW-0474">Menaquinone biosynthesis</keyword>
    <keyword evidence="2 6 7" id="KW-0489">Methyltransferase</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="5 6" id="KW-0949">S-adenosyl-L-methionine</keyword>
    <keyword evidence="3 6 7" id="KW-0808">Transferase</keyword>
    <keyword evidence="7" id="KW-0830">Ubiquinone</keyword>
    <keyword evidence="4 6" id="KW-0831">Ubiquinone biosynthesis</keyword>
    <feature type="region of interest" description="S-adenosyl-L-methionine binding" evidence="6">
        <location>
            <begin position="116"/>
            <end position="117"/>
        </location>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <position position="69"/>
        </location>
        <ligand>
            <name>S-adenosyl-L-methionine</name>
            <dbReference type="ChEBI" id="CHEBI:59789"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <position position="90"/>
        </location>
        <ligand>
            <name>S-adenosyl-L-methionine</name>
            <dbReference type="ChEBI" id="CHEBI:59789"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022428"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022603"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022688"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022691"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01813"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="ABX38090.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="243" mass="26761" checksum="4A27D2E180F467A7" modified="2008-01-15" version="1">MSTTHFGFQSVDEREKASRVRGVFDSVASRYDVMNDLMSGGLHRAWKAYTVMVANLKEGDKALDIAGGTGDLALAFAKKVGSTGQVVHTDINEAMLRVGRDRLINKGVILPTMVCDAEALPFPDNHFDLVSVAFGLRNMTHKDAALKEMNRVLRPGGKLLVLEFSKVAKPLEKAYDWYSFKILPAMGKLVAGDDASYRYLAESIRMHPGQEDLKRLMQECGFGHVDYHNMTGGIAALHVGIKC</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2021-06-02" version="46" xmlns="http://uniprot.org/uniprot">
    <accession>A9BP58</accession>
    <name>A9BP58_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_5474</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX38103.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012207272.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="ABX38103">
        <property type="protein sequence ID" value="ABX38103"/>
        <property type="gene ID" value="Daci_5474"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_5474"/>
    <dbReference type="eggNOG" id="ENOG5032Y0F">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_164747_0_0_4"/>
    <dbReference type="OMA" id="ACATSQW"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="13"/>
            <end position="32"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="39"/>
            <end position="63"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="69"/>
            <end position="86"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX38103.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="91" mass="10189" checksum="0E08C536ECAB9619" modified="2008-01-15" version="1">MGWIASTNHWLNFLAPALFLSPALTLCALLIYGKSQQSLAWWLQVAINLVVGALVLLAGLWWFGRDAKMATYIALVVVMALCQWVLSRGWR</sequence>
</entry>
<entry dataset="Swiss-Prot" created="2009-04-14" modified="2022-08-03" version="74" xmlns="http://uniprot.org/uniprot">
    <accession>A9BP70</accession>
    <name>RL21_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">50S ribosomal protein L21</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="1" type="primary">rplU</name>
        <name type="ordered locus">Daci_5486</name>
    </gene>
    <organism>
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference key="1">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain>DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="1">This protein binds to 23S rRNA in the presence of protein L20.</text>
    </comment>
    <comment type="subunit">
        <text evidence="1">Part of the 50S ribosomal subunit. Contacts protein L20.</text>
    </comment>
    <comment type="similarity">
        <text evidence="1">Belongs to the bacterial ribosomal protein bL21 family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX38115.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012207284.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A9BP70"/>
    <dbReference type="SMR" id="A9BP70"/>
    <dbReference type="STRING" id="398578.Daci_5486"/>
    <dbReference type="PRIDE" id="A9BP70"/>
    <dbReference type="EnsemblBacteria" id="ABX38115">
        <property type="protein sequence ID" value="ABX38115"/>
        <property type="gene ID" value="Daci_5486"/>
    </dbReference>
    <dbReference type="GeneID" id="60689838"/>
    <dbReference type="KEGG" id="dac:Daci_5486"/>
    <dbReference type="eggNOG" id="COG0261">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_061463_3_2_4"/>
    <dbReference type="OMA" id="HRQEITR"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005840">
        <property type="term" value="C:ribosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0019843">
        <property type="term" value="F:rRNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003735">
        <property type="term" value="F:structural constituent of ribosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006412">
        <property type="term" value="P:translation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01363">
        <property type="entry name" value="Ribosomal_L21"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036164">
        <property type="entry name" value="L21-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR028909">
        <property type="entry name" value="L21p-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001787">
        <property type="entry name" value="Ribosomal_L21"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018258">
        <property type="entry name" value="Ribosomal_L21_CS"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR21349">
        <property type="entry name" value="PTHR21349"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00829">
        <property type="entry name" value="Ribosomal_L21p"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF141091">
        <property type="entry name" value="SSF141091"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00061">
        <property type="entry name" value="L21"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01169">
        <property type="entry name" value="RIBOSOMAL_L21"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword id="KW-1185">Reference proteome</keyword>
    <keyword id="KW-0687">Ribonucleoprotein</keyword>
    <keyword id="KW-0689">Ribosomal protein</keyword>
    <keyword id="KW-0694">RNA-binding</keyword>
    <keyword id="KW-0699">rRNA-binding</keyword>
    <feature type="chain" id="PRO_1000143781" description="50S ribosomal protein L21">
        <location>
            <begin position="1"/>
            <end position="103"/>
        </location>
    </feature>
    <evidence type="ECO:0000255" key="1">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01363"/>
        </source>
    </evidence>
    <sequence length="103" mass="11257" checksum="C0C4593A67D816E7" modified="2008-01-15" version="1">MYAVIKTGGKQYRVAAGEKIKVEQIAADVGQEVVIDQVLAVGNGAEIKVGTPLVSGASVKATVVAHGKHDKVHIFKMRRRKHYQKRQGHRQQFTELQIVAIAA</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="67" xmlns="http://uniprot.org/uniprot">
    <accession>A9BP71</accession>
    <name>A9BP71_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Polyprenyl synthetase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Daci_5487</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="4" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="2">Belongs to the FPP/GGPP synthase family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX38116.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_5487"/>
    <dbReference type="PRIDE" id="A9BP71"/>
    <dbReference type="EnsemblBacteria" id="ABX38116">
        <property type="protein sequence ID" value="ABX38116"/>
        <property type="gene ID" value="Daci_5487"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_5487"/>
    <dbReference type="eggNOG" id="COG0142">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_014015_2_0_4"/>
    <dbReference type="OMA" id="GKQMRPM"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016740">
        <property type="term" value="F:transferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008299">
        <property type="term" value="P:isoprenoid biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd00685">
        <property type="entry name" value="Trans_IPPS_HT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.600.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008949">
        <property type="entry name" value="Isoprenoid_synthase_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000092">
        <property type="entry name" value="Polyprenyl_synt"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR033749">
        <property type="entry name" value="Polyprenyl_synt_CS"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00348">
        <property type="entry name" value="polyprenyl_synt"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48576">
        <property type="entry name" value="SSF48576"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00723">
        <property type="entry name" value="POLYPRENYL_SYNTHASE_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00444">
        <property type="entry name" value="POLYPRENYL_SYNTHASE_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="1" id="KW-0460">Magnesium</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0808">Transferase</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022842"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="RuleBase" id="RU004466"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ABX38116.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="359" mass="38319" checksum="E0B0CEACAF72F031" modified="2008-01-15" version="1">MKRSHPAPNLPPGPAAGGIALPIIADPLGGHSTLTTALSTPNPLALITDDMREVDHVIAQRLTTTVPLIAQISQYIIAAGGKRLRPALLLMVCNALGYEGRDRHVLAAVVELIHTATLLHDDVVDESTLRRGRPTANETFGNPASVLVGDFLHSRSFQMMVEVGSMRVLKILSDATNVIAEGEVQQLINTHDASLDEAGYLHVIRSKTAQLFEASAQLGAVLADAPREIEQACAIYGQALGTAFQIIDDVLDYTGDTQEMGKNLGDDLREGKCTLPLIAAMQRGTPEQAAIVRNAIEQGSTEQLSAVVDIVRSTGALDVAREAAHAEARRAIDAINVLPSNLHTASLLQLASQLLERRT</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="97" xmlns="http://uniprot.org/uniprot">
    <accession>A9BPC9</accession>
    <name>A9BPC9_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="4 9">Urocanate hydratase</fullName>
            <shortName evidence="9">Urocanase</shortName>
            <ecNumber evidence="4 9">4.2.1.49</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="8 9">Imidazolonepropionate hydrolase</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="9" type="primary">hutU</name>
        <name evidence="13" type="ordered locus">Daci_0150</name>
    </gene>
    <organism evidence="13 14">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="13 14" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="14">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="14" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="14">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="9">Catalyzes the conversion of urocanate to 4-imidazolone-5-propionate.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1 9">
            <text>4-imidazolone-5-propanoate = H2O + trans-urocanate</text>
            <dbReference type="Rhea" id="RHEA:13101"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:17771"/>
            <dbReference type="ChEBI" id="CHEBI:77893"/>
            <dbReference type="EC" id="4.2.1.49"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="9">
            <name>NAD(+)</name>
            <dbReference type="ChEBI" id="CHEBI:57540"/>
        </cofactor>
        <text evidence="9">Binds 1 NAD(+) per subunit.</text>
    </comment>
    <comment type="pathway">
        <text evidence="2 9">Amino-acid degradation; L-histidine degradation into L-glutamate; N-formimidoyl-L-glutamate from L-histidine: step 2/3.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="9">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="3 9">Belongs to the urocanase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="9">Lacks conserved residue(s) required for the propagation of feature annotation.</text>
    </comment>
    <dbReference type="EC" id="4.2.1.49" evidence="4 9"/>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX32796.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012202089.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_0150"/>
    <dbReference type="PRIDE" id="A9BPC9"/>
    <dbReference type="EnsemblBacteria" id="ABX32796">
        <property type="protein sequence ID" value="ABX32796"/>
        <property type="gene ID" value="Daci_0150"/>
    </dbReference>
    <dbReference type="GeneID" id="60690555"/>
    <dbReference type="KEGG" id="dac:Daci_0150"/>
    <dbReference type="eggNOG" id="COG2987">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_018868_0_1_4"/>
    <dbReference type="OMA" id="LVGDWAN"/>
    <dbReference type="UniPathway" id="UPA00379">
        <property type="reaction ID" value="UER00550"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016153">
        <property type="term" value="F:urocanate hydratase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0019556">
        <property type="term" value="P:histidine catabolic process to glutamate and formamide"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniPathway"/>
    </dbReference>
    <dbReference type="GO" id="GO:0019557">
        <property type="term" value="P:histidine catabolic process to glutamate and formate"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniPathway"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.10730">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00577">
        <property type="entry name" value="HutU"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023637">
        <property type="entry name" value="Urocanase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035401">
        <property type="entry name" value="Urocanase_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038364">
        <property type="entry name" value="Urocanase_central_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023636">
        <property type="entry name" value="Urocanase_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035400">
        <property type="entry name" value="Urocanase_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035085">
        <property type="entry name" value="Urocanase_Rossmann-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036190">
        <property type="entry name" value="Urocanase_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR12216">
        <property type="entry name" value="PTHR12216"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01175">
        <property type="entry name" value="Urocanase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF17392">
        <property type="entry name" value="Urocanase_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF17391">
        <property type="entry name" value="Urocanase_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF001423">
        <property type="entry name" value="Urocanate_hydrat"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF111326">
        <property type="entry name" value="SSF111326"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01228">
        <property type="entry name" value="hutU"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01233">
        <property type="entry name" value="UROCANASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="9" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="5 9" id="KW-0369">Histidine metabolism</keyword>
    <keyword evidence="7 9 13" id="KW-0456">Lyase</keyword>
    <keyword evidence="6 9" id="KW-0520">NAD</keyword>
    <keyword evidence="14" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Urocanase_N" evidence="11">
        <location>
            <begin position="27"/>
            <end position="153"/>
        </location>
    </feature>
    <feature type="domain" description="Urocanase" evidence="10">
        <location>
            <begin position="156"/>
            <end position="370"/>
        </location>
    </feature>
    <feature type="domain" description="Urocanase_C" evidence="12">
        <location>
            <begin position="373"/>
            <end position="567"/>
        </location>
    </feature>
    <feature type="active site" evidence="9">
        <location>
            <position position="432"/>
        </location>
    </feature>
    <feature type="binding site" evidence="9">
        <location>
            <begin position="68"/>
            <end position="69"/>
        </location>
        <ligand>
            <name>NAD(+)</name>
            <dbReference type="ChEBI" id="CHEBI:57540"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="9">
        <location>
            <position position="146"/>
        </location>
        <ligand>
            <name>NAD(+)</name>
            <dbReference type="ChEBI" id="CHEBI:57540"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="9">
        <location>
            <begin position="192"/>
            <end position="194"/>
        </location>
        <ligand>
            <name>NAD(+)</name>
            <dbReference type="ChEBI" id="CHEBI:57540"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="9">
        <location>
            <position position="212"/>
        </location>
        <ligand>
            <name>NAD(+)</name>
            <dbReference type="ChEBI" id="CHEBI:57540"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="9">
        <location>
            <begin position="258"/>
            <end position="259"/>
        </location>
        <ligand>
            <name>NAD(+)</name>
            <dbReference type="ChEBI" id="CHEBI:57540"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="9">
        <location>
            <begin position="283"/>
            <end position="287"/>
        </location>
        <ligand>
            <name>NAD(+)</name>
            <dbReference type="ChEBI" id="CHEBI:57540"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="9">
        <location>
            <begin position="293"/>
            <end position="294"/>
        </location>
        <ligand>
            <name>NAD(+)</name>
            <dbReference type="ChEBI" id="CHEBI:57540"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="9">
        <location>
            <position position="344"/>
        </location>
        <ligand>
            <name>NAD(+)</name>
            <dbReference type="ChEBI" id="CHEBI:57540"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="9">
        <location>
            <position position="514"/>
        </location>
        <ligand>
            <name>NAD(+)</name>
            <dbReference type="ChEBI" id="CHEBI:57540"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00000607"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00004794"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00007578"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00011992"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022808"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023027"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023239"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00031640"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00577"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="10">
        <source>
            <dbReference type="Pfam" id="PF01175"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="11">
        <source>
            <dbReference type="Pfam" id="PF17391"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="12">
        <source>
            <dbReference type="Pfam" id="PF17392"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="13">
        <source>
            <dbReference type="EMBL" id="ABX32796.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="14">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="577" mass="62598" checksum="0DF957B65BE365CB" modified="2008-01-15" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="57" xmlns="http://uniprot.org/uniprot">
    <accession>A9BPH9</accession>
    <name>A9BPH9_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="4">MmgE/PrpD family protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ordered locus">Daci_0200</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
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        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
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                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
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            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="5" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the PrpD family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX32846.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012202139.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_0200"/>
    <dbReference type="PRIDE" id="A9BPH9"/>
    <dbReference type="EnsemblBacteria" id="ABX32846">
        <property type="protein sequence ID" value="ABX32846"/>
        <property type="gene ID" value="Daci_0200"/>
    </dbReference>
    <dbReference type="GeneID" id="60690606"/>
    <dbReference type="KEGG" id="dac:Daci_0200"/>
    <dbReference type="eggNOG" id="COG2079">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_026574_3_1_4"/>
    <dbReference type="OMA" id="AKFSMGT"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016829">
        <property type="term" value="F:lyase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.4100.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.1330.120">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036148">
        <property type="entry name" value="MmgE/PrpD_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR042183">
        <property type="entry name" value="MmgE/PrpD_sf_1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR042188">
        <property type="entry name" value="MmgE/PrpD_sf_2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005656">
        <property type="entry name" value="MmgE_PrpD"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045337">
        <property type="entry name" value="MmgE_PrpD_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045336">
        <property type="entry name" value="MmgE_PrpD_N"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR16943">
        <property type="entry name" value="PTHR16943"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03972">
        <property type="entry name" value="MmgE_PrpD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF19305">
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        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF103378">
        <property type="entry name" value="SSF103378"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="MmgE_PrpD" evidence="2">
        <location>
            <begin position="12"/>
            <end position="252"/>
        </location>
    </feature>
    <feature type="domain" description="MmgE_PrpD_C" evidence="3">
        <location>
            <begin position="272"/>
            <end position="441"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00006174"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF03972"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF19305"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="ABX32846.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="454" mass="47731" checksum="CFA9FBC5608F4BA2" modified="2008-01-15" version="1">MKNDTQVSIHPLAQFAASLRWDDVPAAVQQRAEDLWVDWFGSVLAGQGARPVQSITRFALSQGPAQGPSEILGSADTTSPMMAALANAAASHVAEQDDVHNGSVFHPAAVVFPPALAVAQSIGASGAELMAACVAGYEVGIRVGEFLGRSHYRIFHTTATAGTLAAAAAVGRLLGLTPAQMQHAFGSAGTQSAGLWEFLRTGADSKQLHTAHAAAAGLMSAYLARDGFTGAQDIFTGPQGLAAGMSTDADPTRLTDGIGTRWATAETSFKWHASCRHTHPAADALLQVMQDHGLAPADLAQVTCHVHQGAIDVLGPVVDPGTVHQSKFSMGTVLALAARHGHAGLDEFDNEYLAATTVALREKVGMVLDPEVDAAYPQRWIGKVTVLTTDGRTLHGRVEEPKGDPGNTLSREEITAKALRLIAYGGALQDDPAQAAVARLWQIAHWPRVQRLLD</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="28" xmlns="http://uniprot.org/uniprot">
    <accession>A9BQ08</accession>
    <name>A9BQ08_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Daci_0577</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="2" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX33223.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="PRIDE" id="A9BQ08"/>
    <dbReference type="EnsemblBacteria" id="ABX33223">
        <property type="protein sequence ID" value="ABX33223"/>
        <property type="gene ID" value="Daci_0577"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_0577"/>
    <dbReference type="HOGENOM" id="CLU_805913_0_0_4"/>
    <dbReference type="OMA" id="HIGIWDG"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ABX33223.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="362" mass="40673" checksum="C309B680C99C19E5" modified="2008-01-15" version="1">MKKFHIIFTIALLFLIPKTAFCKGWLDVSTTYNRYIGWACQPGSADPVGIHIYADGHYIGGGNAAIVREFAVQYACNSITSRHGFDISIDVPAVLLDGTIRDVTVYAIYANNRSERLNNTPVKLKFFALPGKEKPTVIGDVVGRDLGSQEVGSLGHIGIWDGRNVLEAIGYGDANDTIKETPWSSFSSKPNLWKTISPVWQGDFRQRFCDESVCWHRQNDNGVLYLLGNQTRTTWLQEMAARSAYVKYKIGASYTLSAYFTPARQGLSYWTKSFCSPFASQCQMTKVERKPIRGFYRCDGLVLDAWTSTAIRGGTPLLGQEIYAAPHQSVVDSWNRQMSYQIAWNRIITPANVHANLQQRNW</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="27" xmlns="http://uniprot.org/uniprot">
    <accession>A9BQ39</accession>
    <name>A9BQ39_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Daci_0608</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="2" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX33254.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_0608"/>
    <dbReference type="PRIDE" id="A9BQ39"/>
    <dbReference type="EnsemblBacteria" id="ABX33254">
        <property type="protein sequence ID" value="ABX33254"/>
        <property type="gene ID" value="Daci_0608"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_0608"/>
    <dbReference type="HOGENOM" id="CLU_862552_0_0_4"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ABX33254.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="322" mass="37046" checksum="2C92AA5EB9327E43" modified="2008-01-15" version="1">MQIYAAGWALQTPILNHFKRFLKINSHHLKLSGIVYPKKIPSNIEGIPVFDFNEVLERIDPSTIFIECYLPSNQELSKDFSNFFQKNNINSQKISEFLRTIIEKDSQELISTPFKHISATDIRSLHKFTPPSFISGNFLDPESYTTANTLHSIFHNSKWDALMEFDNDNSLGQFLINSLSFVQKTRFPKNYQIINSPILFLDSLIKIRQLNDSESFNIIINSTVADQLGNSLEFYKNIFQNHLTIANQPAENSESTAYLSNSTSFMYQRIKSNLQTSTAVMLMQRSIIDYHNLAQALEGQNFRISLRQVDTQPEHLISTLFS</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="72" xmlns="http://uniprot.org/uniprot">
    <accession>A9BQ99</accession>
    <name>A9BQ99_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="3">TPR repeat-containing protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Daci_0863</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="4" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX33509.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_0863"/>
    <dbReference type="CAZy" id="GT41">
        <property type="family name" value="Glycosyltransferase Family 41"/>
    </dbReference>
    <dbReference type="PRIDE" id="A9BQ99"/>
    <dbReference type="EnsemblBacteria" id="ABX33509">
        <property type="protein sequence ID" value="ABX33509"/>
        <property type="gene ID" value="Daci_0863"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_0863"/>
    <dbReference type="eggNOG" id="COG0457">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="eggNOG" id="COG3914">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_001721_4_1_4"/>
    <dbReference type="OMA" id="RQFEVFA"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.25.40.10">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029489">
        <property type="entry name" value="OGT/SEC/SPY_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011990">
        <property type="entry name" value="TPR-like_helical_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019734">
        <property type="entry name" value="TPR_repeat"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13844">
        <property type="entry name" value="Glyco_transf_41"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SMART" id="SM00028">
        <property type="entry name" value="TPR"/>
        <property type="match status" value="5"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48452">
        <property type="entry name" value="SSF48452"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50005">
        <property type="entry name" value="TPR"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0802">TPR repeat</keyword>
    <feature type="repeat" description="TPR" evidence="1">
        <location>
            <begin position="97"/>
            <end position="130"/>
        </location>
    </feature>
    <feature type="repeat" description="TPR" evidence="1">
        <location>
            <begin position="199"/>
            <end position="232"/>
        </location>
    </feature>
    <feature type="domain" description="Glyco_transf_41" evidence="2">
        <location>
            <begin position="276"/>
            <end position="446"/>
        </location>
    </feature>
    <feature type="domain" description="Glyco_transf_41" evidence="2">
        <location>
            <begin position="464"/>
            <end position="608"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00339"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF13844"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ABX33509.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="647" mass="73551" checksum="9EBADF7D09F1628D" modified="2008-01-15" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="88" xmlns="http://uniprot.org/uniprot">
    <accession>A9BQL7</accession>
    <name>A9BQL7_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="5">Benzoyl-CoA oxygenase component A</fullName>
            <ecNumber evidence="5">1.14.13.208</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="9" type="ordered locus">Daci_0072</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="9 10" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="10" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="5">
            <text>benzoyl-CoA + H(+) + NADPH + O2 = 2,3-epoxy-2,3-dihydrobenzoyl-CoA + H2O + NADP(+)</text>
            <dbReference type="Rhea" id="RHEA:48312"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:15379"/>
            <dbReference type="ChEBI" id="CHEBI:57369"/>
            <dbReference type="ChEBI" id="CHEBI:57783"/>
            <dbReference type="ChEBI" id="CHEBI:58349"/>
            <dbReference type="ChEBI" id="CHEBI:88118"/>
            <dbReference type="EC" id="1.14.13.208"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>FAD</name>
            <dbReference type="ChEBI" id="CHEBI:57692"/>
        </cofactor>
    </comment>
    <comment type="subunit">
        <text evidence="5">Homodimer.</text>
    </comment>
    <dbReference type="EC" id="1.14.13.208" evidence="5"/>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX32719.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012202012.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_0072"/>
    <dbReference type="PRIDE" id="A9BQL7"/>
    <dbReference type="EnsemblBacteria" id="ABX32719">
        <property type="protein sequence ID" value="ABX32719"/>
        <property type="gene ID" value="Daci_0072"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_0072"/>
    <dbReference type="eggNOG" id="COG0369">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="eggNOG" id="COG1145">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_053066_0_0_4"/>
    <dbReference type="OMA" id="GKAWLFM"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051536">
        <property type="term" value="F:iron-sulfur cluster binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016491">
        <property type="term" value="F:oxidoreductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.80">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017896">
        <property type="entry name" value="4Fe4S_Fe-S-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017900">
        <property type="entry name" value="4Fe4S_Fe_S_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017634">
        <property type="entry name" value="Benzoyl_CoA_Oase_BoxA"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008333">
        <property type="entry name" value="Cbr1-like_FAD-bd_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017927">
        <property type="entry name" value="FAD-bd_FR_type"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001709">
        <property type="entry name" value="Flavoprot_Pyr_Nucl_cyt_Rdtase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015701">
        <property type="entry name" value="FNR"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR039261">
        <property type="entry name" value="FNR_nucleotide-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001433">
        <property type="entry name" value="OxRdtase_FAD/NAD-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017938">
        <property type="entry name" value="Riboflavin_synthase-like_b-brl"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43314">
        <property type="entry name" value="PTHR43314"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00970">
        <property type="entry name" value="FAD_binding_6"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13187">
        <property type="entry name" value="Fer4_9"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00175">
        <property type="entry name" value="NAD_binding_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF501177">
        <property type="entry name" value="BoxA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF000361">
        <property type="entry name" value="Frd-NADP+_RD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00371">
        <property type="entry name" value="FPNCR"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52343">
        <property type="entry name" value="SSF52343"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF63380">
        <property type="entry name" value="SSF63380"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR03224">
        <property type="entry name" value="benzo_boxA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00198">
        <property type="entry name" value="4FE4S_FER_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51379">
        <property type="entry name" value="4FE4S_FER_2"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51384">
        <property type="entry name" value="FAD_FR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="5" id="KW-0274">FAD</keyword>
    <keyword evidence="5" id="KW-0285">Flavoprotein</keyword>
    <keyword evidence="3" id="KW-0408">Iron</keyword>
    <keyword evidence="4" id="KW-0411">Iron-sulfur</keyword>
    <keyword evidence="2" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="5 6" id="KW-0521">NADP</keyword>
    <keyword evidence="5" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="4Fe-4S ferredoxin-type" evidence="7">
        <location>
            <begin position="12"/>
            <end position="41"/>
        </location>
    </feature>
    <feature type="domain" description="4Fe-4S ferredoxin-type" evidence="7">
        <location>
            <begin position="42"/>
            <end position="70"/>
        </location>
    </feature>
    <feature type="domain" description="FAD-binding FR-type" evidence="8">
        <location>
            <begin position="166"/>
            <end position="288"/>
        </location>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <position position="228"/>
        </location>
        <ligand>
            <name>NADP(+)</name>
            <dbReference type="ChEBI" id="CHEBI:58349"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <position position="248"/>
        </location>
        <ligand>
            <name>NADP(+)</name>
            <dbReference type="ChEBI" id="CHEBI:58349"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <position position="303"/>
        </location>
        <ligand>
            <name>NADP(+)</name>
            <dbReference type="ChEBI" id="CHEBI:58349"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <begin position="362"/>
            <end position="363"/>
        </location>
        <ligand>
            <name>NADP(+)</name>
            <dbReference type="ChEBI" id="CHEBI:58349"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <begin position="398"/>
            <end position="399"/>
        </location>
        <ligand>
            <name>NADP(+)</name>
            <dbReference type="ChEBI" id="CHEBI:58349"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <position position="437"/>
        </location>
        <ligand>
            <name>NADP(+)</name>
            <dbReference type="ChEBI" id="CHEBI:58349"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001974"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023004"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023014"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="PIRNR" id="PIRNR000361"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="PIRSR" id="PIRSR000361-1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="PROSITE" id="PS51379"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="PROSITE" id="PS51384"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="ABX32719.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="439" mass="47906" checksum="73EEE3F385812C2C" modified="2008-01-15" version="1">MTVALVEHGILTQHLIDPEICIRCNTCEATCPVGAITHDDRNYVVLAEQCNGCMDCVSPCPTGAIDNWRKVPLASAYPVAEQLLWDELPEELPPEVLVQAQDAGDASAAEDLSQAQAVIAAAATRGADASRPDDQADTQVLRSASYGATVPPWSAAHPYTNLHGPRSPVTATVVGNLNCTEAGFDSETHHIVLDFGSQPFPVLEGQSIAVIAPGTDAQGRPHVARQYSVASARNGERPGYNNLALTVKRVTQDHQGRPVRGVASNYLCDARIGDRVQVIGPFGQSFLMPNHPRSHIVMICTGTGSAPMRAMTEWRRRLRRSGRFEGGKLMLFFGARTPQELPYFGPLQSLPRDFIDNNLAFSRVAGQPRRYVQDLLRERAADLAALLRDDNAHFYVCGLKSMEEGVVLALRDVAQQAGLDWEQVGARLKREGRLHLETY</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="64" xmlns="http://uniprot.org/uniprot">
    <accession>A9BQP5</accession>
    <name>A9BQP5_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="1">2-oxo-hepta-3-ene-1,7-dioic acid hydratase</fullName>
            <ecNumber evidence="1">4.1.1.77</ecNumber>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Daci_0101</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="2" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EC" id="4.1.1.77" evidence="1"/>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX32747.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012202040.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_0101"/>
    <dbReference type="PRIDE" id="A9BQP5"/>
    <dbReference type="EnsemblBacteria" id="ABX32747">
        <property type="protein sequence ID" value="ABX32747"/>
        <property type="gene ID" value="Daci_0101"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_0101"/>
    <dbReference type="eggNOG" id="COG3971">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_060136_3_0_4"/>
    <dbReference type="OMA" id="YVHPRVE"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0018817">
        <property type="term" value="F:2-oxo-hept-3-ene-1,7-dioate hydratase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0047437">
        <property type="term" value="F:4-oxalocrotonate decarboxylase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0019439">
        <property type="term" value="P:aromatic compound catabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.850.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036663">
        <property type="entry name" value="Fumarylacetoacetase_C_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012690">
        <property type="entry name" value="HpcG"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56529">
        <property type="entry name" value="SSF56529"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR02312">
        <property type="entry name" value="HpaH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0456">Lyase</keyword>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ABX32747.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="277" mass="30077" checksum="0AB88F09997EB5A6" modified="2008-01-15" version="1">MFSQELLTQLAQELDRSEKTRVQVEHFSKRFPGMTVEDGYRVSREWVRLQIAAGRKVIGHKIGLTSRAMQISSQIDEPDYGTLLDSMLYRCTPGQVLDIPAAHFIAPRVEVELAFVLKAPLRGPGLPGGREITLQDVLDATDHVTPAIEIIDARIEQFDRHTKAMRKVYDTISDNAANAGIVVGAGQAVPGVLDLPWCGAILRCNGVVEETGLAAGVQGHPAIGVAWLANKLSPWGEALEAGQTVLAGSFTRPVAAKPGDLFDADYGPLGRLQFRFV</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="58" xmlns="http://uniprot.org/uniprot">
    <accession>A9BQS2</accession>
    <name>A9BQS2_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Secretion protein HlyD family protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ordered locus">Daci_0128</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="5" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX32774.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012202067.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_0128"/>
    <dbReference type="PRIDE" id="A9BQS2"/>
    <dbReference type="EnsemblBacteria" id="ABX32774">
        <property type="protein sequence ID" value="ABX32774"/>
        <property type="gene ID" value="Daci_0128"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_0128"/>
    <dbReference type="eggNOG" id="COG1566">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_071788_0_0_4"/>
    <dbReference type="OMA" id="RVIECVL"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR032317">
        <property type="entry name" value="HlyD_D23"/>
    </dbReference>
    <dbReference type="Pfam" id="PF16576">
        <property type="entry name" value="HlyD_D23"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="2">
        <location>
            <begin position="1"/>
            <end position="33"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5002735696" evidence="2">
        <location>
            <begin position="34"/>
            <end position="314"/>
        </location>
    </feature>
    <feature type="domain" description="HlyD_D23" evidence="3">
        <location>
            <begin position="65"/>
            <end position="252"/>
        </location>
    </feature>
    <feature type="coiled-coil region" evidence="1">
        <location>
            <begin position="151"/>
            <end position="192"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF16576"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="ABX32774.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="314" mass="32691" checksum="447D7344F9953C19" modified="2008-01-15" version="1">MKHPLSGLSASTAGLAAALAAAALLAGCGPSHDAPANAGQASAKAQQNGPASVAVARGKIEVEGGLLDLSPAVAGVVQQLSVKEGQSVQRGQLLLRLADDTGQADLAVAESEAQLAKARQKARAARLPQLKQTLSRWQAAAREGAADAQNVDEAAQALRDAQAEIDVAAAEAQVAQRKLEQLRAQHKRQELRAPEAGTVVRLATHAGSQAVPGTPAVVLLPQRPLQVRAEINESFAAAVREGMRATVTLDADGAAQQQLPSARVLRISPVYGTARLQDDQQRGPVRVIECVLVFEQAPAAAVRVGQNVRVQFHE</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="55" xmlns="http://uniprot.org/uniprot">
    <accession>A9BQX3</accession>
    <name>A9BQX3_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="5">HipA N-terminal domain protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ordered locus">Daci_0282</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="6" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the HipA Ser/Thr kinase family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX32928.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012202221.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_0282"/>
    <dbReference type="PRIDE" id="A9BQX3"/>
    <dbReference type="EnsemblBacteria" id="ABX32928">
        <property type="protein sequence ID" value="ABX32928"/>
        <property type="gene ID" value="Daci_0282"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_0282"/>
    <dbReference type="eggNOG" id="COG3550">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_030167_1_0_4"/>
    <dbReference type="OMA" id="QWYFDNL"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016740">
        <property type="term" value="F:transferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012893">
        <property type="entry name" value="HipA-like_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017508">
        <property type="entry name" value="HipA_N1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13657">
        <property type="entry name" value="Couple_hipA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07804">
        <property type="entry name" value="HipA_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR03071">
        <property type="entry name" value="couple_hipA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Couple_hipA" evidence="4">
        <location>
            <begin position="16"/>
            <end position="111"/>
        </location>
    </feature>
    <feature type="domain" description="HipA_C" evidence="3">
        <location>
            <begin position="155"/>
            <end position="402"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00010164"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF07804"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="Pfam" id="PF13657"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="ABX32928.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="451" mass="49797" checksum="E0B381097AE097F5" modified="2008-01-15" version="1">MATPPSLSLSLWNDVGTHVADVTHDPHNDLWGLRYAPAWLEQERPFYLAPCLPLAAPEGGYDSRSIRRFIENLLPEGAALDVVARSQGIGKGNIFGLIRALGAETTGAFRFQADGSKPDPQAANAARPISTAELAQRIADRDTRPFIEWDGKVRMSVAGYQDKLPVHVEGESVQEGTIFLPDNVPSTHILKPQPRDSAMPHMVVNEHFCMRLAAAMRLPAAEVQMLHVPQPVLAVRRFDRVRQAPQRRVLRTHIIDACQAGDLPVSYKYEHHIGSVGDARLYRDGMSFPRLFGLLEHSVAKAADKLAMIRWALFQILIGNGDAHGKNFSFHVLPQGLATAPWYDLVSVAQYPDVSQDLAMAFGDCFALEELTPFEFAHFAHLCAIDRRLLAREAQRMAKAAPVAAAKVLRESPYTPEEHAFAQRIAAYATTQAQRLVDIAQKAAALPSDLF</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="92" xmlns="http://uniprot.org/uniprot">
    <accession>A9BR18</accession>
    <name>A9BR18_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">Histidine kinase</fullName>
            <ecNumber evidence="2">2.7.13.3</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="9" type="ordered locus">Daci_0327</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="9 10" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="10" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>ATP + protein L-histidine = ADP + protein N-phospho-L-histidine.</text>
            <dbReference type="EC" id="2.7.13.3"/>
        </reaction>
    </comment>
    <dbReference type="EC" id="2.7.13.3" evidence="2"/>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX32973.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012202266.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_0327"/>
    <dbReference type="PRIDE" id="A9BR18"/>
    <dbReference type="EnsemblBacteria" id="ABX32973">
        <property type="protein sequence ID" value="ABX32973"/>
        <property type="gene ID" value="Daci_0327"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_0327"/>
    <dbReference type="eggNOG" id="COG2205">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_000445_89_27_4"/>
    <dbReference type="OMA" id="IDNIAHE"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000155">
        <property type="term" value="F:phosphorelay sensor kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd00082">
        <property type="entry name" value="HisKA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.565.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003660">
        <property type="entry name" value="HAMP_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003594">
        <property type="entry name" value="HATPase_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036890">
        <property type="entry name" value="HATPase_C_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005467">
        <property type="entry name" value="His_kinase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003661">
        <property type="entry name" value="HisK_dim/P"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036097">
        <property type="entry name" value="HisK_dim/P_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004358">
        <property type="entry name" value="Sig_transdc_His_kin-like_C"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00672">
        <property type="entry name" value="HAMP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02518">
        <property type="entry name" value="HATPase_c"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00512">
        <property type="entry name" value="HisKA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00344">
        <property type="entry name" value="BCTRLSENSOR"/>
    </dbReference>
    <dbReference type="SMART" id="SM00304">
        <property type="entry name" value="HAMP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00387">
        <property type="entry name" value="HATPase_c"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00388">
        <property type="entry name" value="HisKA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47384">
        <property type="entry name" value="SSF47384"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55874">
        <property type="entry name" value="SSF55874"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50885">
        <property type="entry name" value="HAMP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50109">
        <property type="entry name" value="HIS_KIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="5 9" id="KW-0418">Kinase</keyword>
    <keyword evidence="6" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-0597">Phosphoprotein</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4" id="KW-0808">Transferase</keyword>
    <keyword evidence="6" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="6" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="12"/>
            <end position="34"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="124"/>
            <end position="143"/>
        </location>
    </feature>
    <feature type="domain" description="HAMP" evidence="8">
        <location>
            <begin position="144"/>
            <end position="196"/>
        </location>
    </feature>
    <feature type="domain" description="Histidine kinase" evidence="7">
        <location>
            <begin position="204"/>
            <end position="408"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00000085"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00012438"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022553"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022777"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="PROSITE" id="PS50109"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="PROSITE" id="PS50885"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="ABX32973.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="408" mass="44468" checksum="B0C174E494A46EA6" modified="2008-01-15" version="1">MKLLSLFSQRLYLRIWLAVVGGVAVLTLTVAWAWQIAAEQNAQNVQSASSPPSRDVAMRDGQGNVIAQGRARRLPGSPEEGLRFEIEGTDGQTYMLHMAPRPPRGDRPPHDGAAAFWLRPPFGFLWLLGLVGVAVAVGVFPIIRRLLKRLENLQRGVKRFGEGDLSVRVPEHGSDEVADLAHQFNAAAARIETLVTSHKSLLANASHELRSPLTRIRMGLEFMGDDPASARARAEIQRNISELDQLVDEILLASRLETYEGDVGTIEPVDLIGLAAEECARVDADLDLQSTDALEVPGISKLLRRAVRNLLENARRYSQGAITLELARQDAMAEIRVCDHGPGVAPAHRERIFEKFFRLPGASERSGGVGLGLALVRSIAQRHGGSVHCEGRADGQPGACFVLRLPLA</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="96" xmlns="http://uniprot.org/uniprot">
    <accession>A9BR19</accession>
    <name>A9BR19_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="6">Two component transcriptional regulator, winged helix family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ordered locus">Daci_0328</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="7" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX32974.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012202267.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_0328"/>
    <dbReference type="PRIDE" id="A9BR19"/>
    <dbReference type="EnsemblBacteria" id="ABX32974">
        <property type="protein sequence ID" value="ABX32974"/>
        <property type="gene ID" value="Daci_0328"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_0328"/>
    <dbReference type="eggNOG" id="COG0745">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_000445_30_4_4"/>
    <dbReference type="OMA" id="VWGWDFG"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000160">
        <property type="term" value="P:phosphorelay signal transduction system"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006355">
        <property type="term" value="P:regulation of transcription, DNA-templated"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd00383">
        <property type="entry name" value="trans_reg_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011006">
        <property type="entry name" value="CheY-like_superfamily"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001867">
        <property type="entry name" value="OmpR/PhoB-type_DNA-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016032">
        <property type="entry name" value="Sig_transdc_resp-reg_C-effctor"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001789">
        <property type="entry name" value="Sig_transdc_resp-reg_receiver"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR039420">
        <property type="entry name" value="WalR-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR48111">
        <property type="entry name" value="PTHR48111"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00072">
        <property type="entry name" value="Response_reg"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00486">
        <property type="entry name" value="Trans_reg_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00448">
        <property type="entry name" value="REC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00862">
        <property type="entry name" value="Trans_reg_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46894">
        <property type="entry name" value="SSF46894"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52172">
        <property type="entry name" value="SSF52172"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51755">
        <property type="entry name" value="OMPR_PHOB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50110">
        <property type="entry name" value="RESPONSE_REGULATORY"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1 3" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="2" id="KW-0597">Phosphoprotein</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Response regulatory" evidence="4">
        <location>
            <begin position="11"/>
            <end position="135"/>
        </location>
    </feature>
    <feature type="domain" description="OmpR/PhoB-type" evidence="5">
        <location>
            <begin position="150"/>
            <end position="249"/>
        </location>
    </feature>
    <feature type="DNA-binding region" description="OmpR/PhoB-type" evidence="3">
        <location>
            <begin position="150"/>
            <end position="249"/>
        </location>
    </feature>
    <feature type="modified residue" description="4-aspartylphosphate" evidence="2">
        <location>
            <position position="67"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00169"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU01091"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="PROSITE" id="PS50110"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="PROSITE" id="PS51755"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="ABX32974.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="252" mass="27603" checksum="7E240FF18268CF49" modified="2008-01-15" version="1">MNTLPSMSTHHLLMIEDDTRLAQMVGDYLGNNGLQVTHMGDARSGLEQLQPADGVPGADLPDLVILDLMLPDMDGLEVCRRIRALPGPAAQVPVLMLTAKGDPMDRIIGLEIGADDYLPKPFEPRELLARIRAILRRRGGGEGTANAQVTTALRFGSLEIDRDARSVTVAGQPCELTSYQFDLLVTLAERAGRVLTRDQIMEAVRGRELEAFDRSIDVHMGRIRAAIEADPKAPKRILTVRGVGYVFAKQQD</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="60" xmlns="http://uniprot.org/uniprot">
    <accession>A9BR25</accession>
    <name>A9BR25_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Beta-lactamase domain protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Daci_0334</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="4" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX32980.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012202273.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_0334"/>
    <dbReference type="PRIDE" id="A9BR25"/>
    <dbReference type="EnsemblBacteria" id="ABX32980">
        <property type="protein sequence ID" value="ABX32980"/>
        <property type="gene ID" value="Daci_0334"/>
    </dbReference>
    <dbReference type="GeneID" id="60690740"/>
    <dbReference type="KEGG" id="dac:Daci_0334"/>
    <dbReference type="eggNOG" id="COG0491">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_030571_5_0_4"/>
    <dbReference type="OMA" id="GAWGTNC"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.60.15.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001279">
        <property type="entry name" value="Metallo-B-lactamas"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036866">
        <property type="entry name" value="RibonucZ/Hydroxyglut_hydro"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00753">
        <property type="entry name" value="Lactamase_B"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00849">
        <property type="entry name" value="Lactamase_B"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56281">
        <property type="entry name" value="SSF56281"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Lactamase_B" evidence="2">
        <location>
            <begin position="13"/>
            <end position="193"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="191"/>
            <end position="212"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="SMART" id="SM00849"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ABX32980.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="212" mass="23378" checksum="5DC1D363F66684B8" modified="2008-01-15" version="1">MLQYHTIPVTAFQQNCSLVWCDQTMEAAVIDPGGDLEQIGWEIERLGLALKAIWLTHAHIDHAGGTRELADAQQLPIIGPHPGDQFWIDALPQQGAMFGFPHSDPFTPTRWLHDGDTVSIGQETLQVRHCPGHTPGHVVFHAPQIDRAFVGDVLFAGSIGRTDFPQGNHQQLIDSIVQRLWPMGDQTVFIPGHGPESSFGRERKSNPYVGGT</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="34" xmlns="http://uniprot.org/uniprot">
    <accession>A9BR60</accession>
    <name>A9BR60_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Daci_0472</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="2" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX33118.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_0472"/>
    <dbReference type="PRIDE" id="A9BR60"/>
    <dbReference type="EnsemblBacteria" id="ABX33118">
        <property type="protein sequence ID" value="ABX33118"/>
        <property type="gene ID" value="Daci_0472"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_0472"/>
    <dbReference type="eggNOG" id="ENOG50337C7">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_153750_0_0_4"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ABX33118.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="138" mass="14641" checksum="75FFC53687DC11C5" modified="2008-01-15" version="1">MLETHGCDGLCALRSAGGWIDPMRPSRTFESSQPEETIMKTSYLPLIAALTLGVSLPALAGPDFQAIEKARAARQAAGAAQAVTTRVDSASGQRVKCLPAPLVLPLDHGPRAQTTPGENRMRKARYEAQVKACANPES</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-05-25" version="75" xmlns="http://uniprot.org/uniprot">
    <accession>A9BR66</accession>
    <name>A9BR66_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Transcriptional regulator, MerR family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_0478</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX33124.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_0478"/>
    <dbReference type="EnsemblBacteria" id="ABX33124">
        <property type="protein sequence ID" value="ABX33124"/>
        <property type="gene ID" value="Daci_0478"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_0478"/>
    <dbReference type="eggNOG" id="COG0789">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_060077_2_0_4"/>
    <dbReference type="OMA" id="PSQDCDD"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003700">
        <property type="term" value="F:DNA-binding transcription factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0045893">
        <property type="term" value="P:positive regulation of transcription, DNA-templated"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd04784">
        <property type="entry name" value="HTH_CadR-PbrR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011791">
        <property type="entry name" value="CadR-PbrR"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009061">
        <property type="entry name" value="DNA-bd_dom_put_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000551">
        <property type="entry name" value="MerR-type_HTH_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13411">
        <property type="entry name" value="MerR_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00040">
        <property type="entry name" value="HTHMERR"/>
    </dbReference>
    <dbReference type="SMART" id="SM00422">
        <property type="entry name" value="HTH_MERR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46955">
        <property type="entry name" value="SSF46955"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR02047">
        <property type="entry name" value="CadR-PbrR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50937">
        <property type="entry name" value="HTH_MERR_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HTH merR-type" evidence="1">
        <location>
            <begin position="11"/>
            <end position="80"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS50937"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX33124.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="146" mass="16249" checksum="C0F5B1991E8A1830" modified="2008-01-15" version="1">MHVLTTCECSAMKIGELSHATGVDTDTIRFYERTGVLPPPARQTNGYRVYGTEHIDGLSFVRHCRALDIPLADVRRLLNFTSRPDEDCADINRLVDEQIARVRARLTSLKALERQLTTLRARCSAGHQAKECGILGELVSAAQREA</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="68" xmlns="http://uniprot.org/uniprot">
    <accession>A9BRG3</accession>
    <name>A9BRG3_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ordered locus">Daci_0678</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="5" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="3">
            <name>Mn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29035"/>
        </cofactor>
        <text evidence="3">Binds 2 manganese ions per subunit.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX33324.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012202610.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_0678"/>
    <dbReference type="PRIDE" id="A9BRG3"/>
    <dbReference type="EnsemblBacteria" id="ABX33324">
        <property type="protein sequence ID" value="ABX33324"/>
        <property type="gene ID" value="Daci_0678"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_0678"/>
    <dbReference type="eggNOG" id="COG1690">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_022279_1_1_4"/>
    <dbReference type="OMA" id="QTRGVEC"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005525">
        <property type="term" value="F:GTP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008452">
        <property type="term" value="F:RNA ligase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006396">
        <property type="term" value="P:RNA processing"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.1860.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001233">
        <property type="entry name" value="RtcB"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036025">
        <property type="entry name" value="RtcB-like_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01139">
        <property type="entry name" value="RtcB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF103365">
        <property type="entry name" value="SSF103365"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0342">GTP-binding</keyword>
    <keyword evidence="3" id="KW-0464">Manganese</keyword>
    <keyword evidence="3" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="2" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="active site" description="GMP-histidine intermediate" evidence="1">
        <location>
            <position position="341"/>
        </location>
    </feature>
    <feature type="binding site" evidence="3">
        <location>
            <position position="83"/>
        </location>
        <ligand>
            <name>Mn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29035"/>
            <label>1</label>
        </ligand>
    </feature>
    <feature type="binding site" evidence="2">
        <location>
            <begin position="175"/>
            <end position="179"/>
        </location>
        <ligand>
            <name>GMP</name>
            <dbReference type="ChEBI" id="CHEBI:58115"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="3">
        <location>
            <position position="176"/>
        </location>
        <ligand>
            <name>Mn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29035"/>
            <label>1</label>
        </ligand>
    </feature>
    <feature type="binding site" evidence="3">
        <location>
            <position position="193"/>
        </location>
        <ligand>
            <name>Mn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29035"/>
            <label>2</label>
        </ligand>
    </feature>
    <feature type="binding site" evidence="2">
        <location>
            <begin position="285"/>
            <end position="286"/>
        </location>
        <ligand>
            <name>GMP</name>
            <dbReference type="ChEBI" id="CHEBI:58115"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="3">
        <location>
            <position position="285"/>
        </location>
        <ligand>
            <name>Mn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29035"/>
            <label>2</label>
        </ligand>
    </feature>
    <feature type="binding site" evidence="2">
        <location>
            <begin position="317"/>
            <end position="320"/>
        </location>
        <ligand>
            <name>GMP</name>
            <dbReference type="ChEBI" id="CHEBI:58115"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="2">
        <location>
            <position position="324"/>
        </location>
        <ligand>
            <name>GMP</name>
            <dbReference type="ChEBI" id="CHEBI:58115"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="2">
        <location>
            <begin position="341"/>
            <end position="344"/>
        </location>
        <ligand>
            <name>GMP</name>
            <dbReference type="ChEBI" id="CHEBI:58115"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="2">
        <location>
            <position position="411"/>
        </location>
        <ligand>
            <name>GMP</name>
            <dbReference type="ChEBI" id="CHEBI:58115"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="PIRSR" id="PIRSR601233-1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="PIRSR" id="PIRSR601233-2"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="PIRSR" id="PIRSR601233-3"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="ABX33324.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="412" mass="45312" checksum="6AAE82E612219335" modified="2008-01-15" version="1">MKENSTMNNYQQHDVEGGVPIKMWTKGVPVEDEARKQLENAARLPVVFKHVAAMPDVHLGIGATVGSVIPTIKAIIPAAVGVDIGCGMMAAKTTLRAEDLPDNLGPLRSAIEQAVPHGSVPRHRGRDPGSWENPPVSVDQVWATLADEFDLLCELHPRLANTNNRKHLGTLGSGNHFIEICLDEAGFVWFMLHSGSRGVGNAIGTHFIELAKKDAELHQRNLPDKDLAYFEEGARYFGDYVRGVSWAQKFAMRNREVMMANLIATVRKVIAKPFESHVEAVNCHHNYVQQERHFGQDVFITRKGAVSARRGELGIIPGSMGARSYIVRGLGNPESFESCSHGAGRVMSRTKAKKMFSVEDHIKATEGVECRKDANVVDEIPMAYKDIDAVMAAQQDLVEVVHTLKQVVCVKG</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-01-19" version="63" xmlns="http://uniprot.org/uniprot">
    <accession>A9BRJ4</accession>
    <name>A9BRJ4_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Phosphatidylglycerophosphatase A</fullName>
            <ecNumber evidence="1">3.1.3.27</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="1">Phosphatidylglycerolphosphate phosphatase A</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="4" type="ordered locus">Daci_0709</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="5" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="1">Lipid phosphatase which dephosphorylates phosphatidylglycerophosphate (PGP) to phosphatidylglycerol (PG).</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>1,2-diacyl-sn-glycero-3-phospho-(1'-sn-glycero-3'-phosphate) + H2O = 1,2-diacyl-sn-glycero-3-phospho-(1'-sn-glycerol) + phosphate</text>
            <dbReference type="Rhea" id="RHEA:33751"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:43474"/>
            <dbReference type="ChEBI" id="CHEBI:60110"/>
            <dbReference type="ChEBI" id="CHEBI:64716"/>
            <dbReference type="EC" id="3.1.3.27"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </cofactor>
    </comment>
    <comment type="pathway">
        <text evidence="1">Phospholipid metabolism; phosphatidylglycerol biosynthesis; phosphatidylglycerol from CDP-diacylglycerol: step 2/2.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Cell inner membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <dbReference type="EC" id="3.1.3.27" evidence="1"/>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX33355.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_0709"/>
    <dbReference type="EnsemblBacteria" id="ABX33355">
        <property type="protein sequence ID" value="ABX33355"/>
        <property type="gene ID" value="Daci_0709"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_0709"/>
    <dbReference type="eggNOG" id="COG1267">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_103734_0_0_4"/>
    <dbReference type="OMA" id="VWDEIAG"/>
    <dbReference type="UniPathway" id="UPA00084">
        <property type="reaction ID" value="UER00504"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008962">
        <property type="term" value="F:phosphatidylglycerophosphatase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006655">
        <property type="term" value="P:phosphatidylglycerol biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniPathway"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009395">
        <property type="term" value="P:phospholipid catabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd06971">
        <property type="entry name" value="PgpA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR026037">
        <property type="entry name" value="PgpA"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036681">
        <property type="entry name" value="PgpA-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007686">
        <property type="entry name" value="YutG/PgpA"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR36305">
        <property type="entry name" value="PTHR36305"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04608">
        <property type="entry name" value="PgpA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF006162">
        <property type="entry name" value="PgpA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF101307">
        <property type="entry name" value="SSF101307"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0997">Cell inner membrane</keyword>
    <keyword evidence="1" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="1" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="1" id="KW-0442">Lipid degradation</keyword>
    <keyword evidence="1" id="KW-0443">Lipid metabolism</keyword>
    <keyword evidence="1" id="KW-0460">Magnesium</keyword>
    <keyword evidence="1 2" id="KW-0472">Membrane</keyword>
    <keyword evidence="1" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="1" id="KW-0595">Phospholipid degradation</keyword>
    <keyword evidence="1" id="KW-1208">Phospholipid metabolism</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1 2" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="2" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="16"/>
            <end position="42"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="54"/>
            <end position="73"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="93"/>
            <end position="114"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="135"/>
            <end position="161"/>
        </location>
    </feature>
    <feature type="domain" description="PgpA" evidence="3">
        <location>
            <begin position="14"/>
            <end position="161"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="PIRNR" id="PIRNR006162"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF04608"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="ABX33355.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="166" mass="18734" checksum="F8A5284FFF5925A9" modified="2008-01-15" version="1">MARPTLEFMMSHPAHFIAMGLGSGLGRIAPGTVGTLWAWLSFLLLQHWFTPQQIGLLIAGSIPLGWWACTVTARHMRVADPGNLVWDEIVAFWLVLWLVMPTGFWGQLIAFALFRFFDAAKPQPVKWADRCFKGFGWRGGWGIMFDDLVAAFCTLLVIALWRHFIG</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="69" xmlns="http://uniprot.org/uniprot">
    <accession>A9BRM7</accession>
    <name>A9BRM7_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Methyl-accepting chemotaxis sensory transducer</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ordered locus">Daci_0742</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="5" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX33388.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012202674.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_0742"/>
    <dbReference type="PRIDE" id="A9BRM7"/>
    <dbReference type="EnsemblBacteria" id="ABX33388">
        <property type="protein sequence ID" value="ABX33388"/>
        <property type="gene ID" value="Daci_0742"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_0742"/>
    <dbReference type="eggNOG" id="COG0840">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_000445_107_16_4"/>
    <dbReference type="OMA" id="IDKESAH"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016020">
        <property type="term" value="C:membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004888">
        <property type="term" value="F:transmembrane signaling receptor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006935">
        <property type="term" value="P:chemotaxis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0007165">
        <property type="term" value="P:signal transduction"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004090">
        <property type="entry name" value="Chemotax_Me-accpt_rcpt"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR024478">
        <property type="entry name" value="HlyB_4HB_MCP"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004089">
        <property type="entry name" value="MCPsignal_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12729">
        <property type="entry name" value="4HB_MCP_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00015">
        <property type="entry name" value="MCPsignal"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00260">
        <property type="entry name" value="CHEMTRNSDUCR"/>
    </dbReference>
    <dbReference type="SMART" id="SM00283">
        <property type="entry name" value="MA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50111">
        <property type="entry name" value="CHEMOTAXIS_TRANSDUC_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0807">Transducer</keyword>
    <feature type="domain" description="Methyl-accepting transducer" evidence="3">
        <location>
            <begin position="276"/>
            <end position="505"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="524"/>
            <end position="581"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00284"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="PROSITE" id="PS50111"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="ABX33388.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="581" mass="61163" checksum="93C036CF15F40DE9" modified="2008-01-15" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="62" xmlns="http://uniprot.org/uniprot">
    <accession>A9BRU8</accession>
    <name>A9BRU8_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ordered locus">Daci_1019</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="5" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Periplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the UPF0065 (bug) family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX33665.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012202951.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_1019"/>
    <dbReference type="PRIDE" id="A9BRU8"/>
    <dbReference type="EnsemblBacteria" id="ABX33665">
        <property type="protein sequence ID" value="ABX33665"/>
        <property type="gene ID" value="Daci_1019"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_1019"/>
    <dbReference type="eggNOG" id="COG3181">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_045683_0_2_4"/>
    <dbReference type="OMA" id="YSWIGIF"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0042597">
        <property type="term" value="C:periplasmic space"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.190.150">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005064">
        <property type="entry name" value="BUG"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR042100">
        <property type="entry name" value="Bug_dom1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006311">
        <property type="entry name" value="TAT_signal"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR42928">
        <property type="entry name" value="PTHR42928"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03401">
        <property type="entry name" value="TctC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF017082">
        <property type="entry name" value="YflP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51318">
        <property type="entry name" value="TAT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="3">
        <location>
            <begin position="1"/>
            <end position="32"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5002735734" evidence="3">
        <location>
            <begin position="33"/>
            <end position="330"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004418"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00006987"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="ABX33665.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="330" mass="35194" checksum="8705F3229779530E" modified="2008-01-15" version="1">MPCPPSRHLSRRQLLLATAAACLLGPSGTASAQGATPLKLVITFPPGGSTDIAARILQPRLGEVAGRPVIVENRPGAASQIATQYVAKSAPDGNTLLFSFDTHAINPIAKSRLPYDTFKDFTGVSLALRFPLVIGASASVPAKDLAGFLELARRNPGKYSYASTGLGSMNHLVMEDIKRRSGTYVLHVPYGGGGPAVQAVLGNVSDLTLLSYAALRGQISAGKIKPLAVTGLKRLPELPDVPTVAESGFPGFEAYSWIGVFAPSATPAATVHKLTEDFQATLNTPDIRSKLMQSGFEVMATDGPALDRWVRQEYERWGRFVRDNKVQLED</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="77" xmlns="http://uniprot.org/uniprot">
    <accession>A9BS39</accession>
    <name>A9BS39_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Transcriptional regulator, LysR family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Daci_0803</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="4" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the LysR transcriptional regulatory family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX33449.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012202735.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_0803"/>
    <dbReference type="PRIDE" id="A9BS39"/>
    <dbReference type="EnsemblBacteria" id="ABX33449">
        <property type="protein sequence ID" value="ABX33449"/>
        <property type="gene ID" value="Daci_0803"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_0803"/>
    <dbReference type="eggNOG" id="COG0583">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_039613_6_0_4"/>
    <dbReference type="OMA" id="IHAHTFE"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003700">
        <property type="term" value="F:DNA-binding transcription factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005119">
        <property type="entry name" value="LysR_subst-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000847">
        <property type="entry name" value="Tscrpt_reg_HTH_LysR"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036390">
        <property type="entry name" value="WH_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00126">
        <property type="entry name" value="HTH_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03466">
        <property type="entry name" value="LysR_substrate"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46785">
        <property type="entry name" value="SSF46785"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50931">
        <property type="entry name" value="HTH_LYSR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HTH lysR-type" evidence="2">
        <location>
            <begin position="1"/>
            <end position="60"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00009437"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS50931"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ABX33449.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="308" mass="33263" checksum="2938B7AD466E0328" modified="2008-01-15" version="1">MRYDLTDLKLFMAIAQAGNLSRASQARHLTPSAASQRLRNLEQALGCQLFTREHKGMRLTEEGHAMLEHARGVFAAIDGMEAEAALLGSSLQGKATLAANSSSLHGFIGPHVGEFLTAFPEVNLTLVEQTSETIAASVAEGEADLGVYAGEPMAGAVACETFAQDRLVVIAPPGHPLVPQPGERPEDGEGPSCRFFDTLAHAFVGMALTSSNYAFLRELAKRHGRPLRCRIHVDDFTSIVRLVSQGVGLAIIPHSIYRRLGTAHAVACLPLEETWARRPLQLVRSSERPLTPTAQRLRSFLKGLADKA</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="78" xmlns="http://uniprot.org/uniprot">
    <accession>A9BS80</accession>
    <name>A9BS80_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="6">OmpA/MotB domain protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ordered locus">Daci_0844</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="7" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX33490.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012202776.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_0844"/>
    <dbReference type="PRIDE" id="A9BS80"/>
    <dbReference type="EnsemblBacteria" id="ABX33490">
        <property type="protein sequence ID" value="ABX33490"/>
        <property type="gene ID" value="Daci_0844"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_0844"/>
    <dbReference type="eggNOG" id="COG2885">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_016890_6_4_4"/>
    <dbReference type="OMA" id="IGNYMDK"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd07185">
        <property type="entry name" value="OmpA_C-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.1330.60">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR039567">
        <property type="entry name" value="Gly-zipper"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006664">
        <property type="entry name" value="OMP_bac"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006665">
        <property type="entry name" value="OmpA-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036737">
        <property type="entry name" value="OmpA-like_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13488">
        <property type="entry name" value="Gly-zipper_Omp"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00691">
        <property type="entry name" value="OmpA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR01021">
        <property type="entry name" value="OMPADOMAIN"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF103088">
        <property type="entry name" value="SSF103088"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51123">
        <property type="entry name" value="OMPA_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1 2" id="KW-0472">Membrane</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="4">
        <location>
            <begin position="1"/>
            <end position="23"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5002733034" evidence="4">
        <location>
            <begin position="24"/>
            <end position="244"/>
        </location>
    </feature>
    <feature type="domain" description="OmpA-like" evidence="5">
        <location>
            <begin position="97"/>
            <end position="214"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="3">
        <location>
            <begin position="181"/>
            <end position="200"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="3">
        <location>
            <begin position="211"/>
            <end position="244"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="3">
        <location>
            <begin position="213"/>
            <end position="244"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00473"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="PROSITE" id="PS51123"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="ABX33490.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="244" mass="26093" checksum="23BAA638A428AABD" modified="2008-01-15" version="1">MRKHIVLAAATAAALFISGCANMSDTQRRTATGAGVGAAAGAVLGAVTGGRAGTGAVIGAGVGALGTYIWSQNMEKQKREMEQATQGTGVNVSQTADNQLKLDIPSDISFDTNRSDIKGNFAPILDRFAEGLRNNPNAEVRIIGHTDSTGSDAINNPLSLDRANSTRNYLTMRGVSGARIATEGRGSHQPVASNDSASGRAMNRRVEIFVGEIPQQHQQQQQPQYQQQPQYQQPQYQPQYQQPR</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="71" xmlns="http://uniprot.org/uniprot">
    <accession>A9BS96</accession>
    <name>A9BS96_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="6">3-hydroxyisobutyrate dehydrogenase</fullName>
            <ecNumber evidence="6">1.1.1.31</ecNumber>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ordered locus">Daci_1065</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="7" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EC" id="1.1.1.31" evidence="6"/>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX33710.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012202996.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_1065"/>
    <dbReference type="PRIDE" id="A9BS96"/>
    <dbReference type="EnsemblBacteria" id="ABX33710">
        <property type="protein sequence ID" value="ABX33710"/>
        <property type="gene ID" value="Daci_1065"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_1065"/>
    <dbReference type="eggNOG" id="COG2084">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_035117_1_0_4"/>
    <dbReference type="OMA" id="IFVDHTT"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008442">
        <property type="term" value="F:3-hydroxyisobutyrate dehydrogenase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051287">
        <property type="term" value="F:NAD binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0050661">
        <property type="term" value="F:NADP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016054">
        <property type="term" value="P:organic acid catabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.1040.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002204">
        <property type="entry name" value="3-OH-isobutyrate_DH-rel_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008927">
        <property type="entry name" value="6-PGluconate_DH-like_C_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013328">
        <property type="entry name" value="6PGD_dom2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006115">
        <property type="entry name" value="6PGDH_NADP-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015815">
        <property type="entry name" value="HIBADH-related"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036291">
        <property type="entry name" value="NAD(P)-bd_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029154">
        <property type="entry name" value="NADP-bd"/>
    </dbReference>
    <dbReference type="Pfam" id="PF14833">
        <property type="entry name" value="NAD_binding_11"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03446">
        <property type="entry name" value="NAD_binding_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF000103">
        <property type="entry name" value="HIBADH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48179">
        <property type="entry name" value="SSF48179"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51735">
        <property type="entry name" value="SSF51735"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00895">
        <property type="entry name" value="3_HYDROXYISOBUT_DH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0520">NAD</keyword>
    <keyword evidence="1 6" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="NAD_binding_2" evidence="4">
        <location>
            <begin position="19"/>
            <end position="178"/>
        </location>
    </feature>
    <feature type="domain" description="NAD_binding_11" evidence="5">
        <location>
            <begin position="181"/>
            <end position="300"/>
        </location>
    </feature>
    <feature type="active site" evidence="3">
        <location>
            <position position="187"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023002"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023027"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="PIRSR" id="PIRSR000103-1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="Pfam" id="PF03446"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="Pfam" id="PF14833"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="ABX33710.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="303" mass="31718" checksum="5557E0205652C9EA" modified="2008-01-15" version="1">MSDSSIAARSYADTAPLSVAFLGLGVMGYPMAGHLATAGHRVTVYNRTPAKARAWCEEFNGGHAATPREAVAGADIVFSCVGNDDDLRSVVLGPDGAFAGMRRGAIFADHTTASAEVARELHAAGLELGLQFIDAPVSGGQAGAQNGQLTVMCGGDEAAFATMQPVAMAFSRACTLMGDSGAGQLTKMVNQICIAGLVQGLSEAIAFGQRAGLDIPSVLDVIGKGAAQSWQMDNRGRTMAEGKFDFGFAVDWMRKDLGLVLAEAQRNGARLPVTALVDQFYADVQQMGGRRWDTSSLIKRLTP</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="59" xmlns="http://uniprot.org/uniprot">
    <accession>A9BSG8</accession>
    <name>A9BSG8_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="4">CMP/dCMP deaminase zinc-binding</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ordered locus">Daci_1137</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="5" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX33782.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012203068.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_1137"/>
    <dbReference type="PRIDE" id="A9BSG8"/>
    <dbReference type="EnsemblBacteria" id="ABX33782">
        <property type="protein sequence ID" value="ABX33782"/>
        <property type="gene ID" value="Daci_1137"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_1137"/>
    <dbReference type="eggNOG" id="COG0590">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_025810_5_1_4"/>
    <dbReference type="OMA" id="SCQPCGM"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016787">
        <property type="term" value="F:hydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008270">
        <property type="term" value="F:zinc ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016192">
        <property type="entry name" value="APOBEC/CMP_deaminase_Zn-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002125">
        <property type="entry name" value="CMP_dCMP_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016193">
        <property type="entry name" value="Cytidine_deaminase-like"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00383">
        <property type="entry name" value="dCMP_cyt_deam_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53927">
        <property type="entry name" value="SSF53927"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00903">
        <property type="entry name" value="CYT_DCMP_DEAMINASES_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51747">
        <property type="entry name" value="CYT_DCMP_DEAMINASES_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0862">Zinc</keyword>
    <feature type="domain" description="CMP/dCMP-type deaminase" evidence="3">
        <location>
            <begin position="16"/>
            <end position="130"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022833"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="PROSITE" id="PS51747"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="ABX33782.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="171" mass="18165" checksum="05489AC4FAE83334" modified="2008-01-15" version="1">MDHATVSLPLEASLDERDGLYLRRAIAMADRARQRGNRPFGALIVAADGRVLAEASNANGESGDCTAHAELSAIRLASPLHDREALSAATLYSSAEPCVMCAGAIFWSAIGRVVYGIDAVRLREFRGERLDQKDAELSCRDVFAASSHAIECIGPALIGEAAASHQGAWKS</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-01-19" version="31" xmlns="http://uniprot.org/uniprot">
    <accession>A9BT41</accession>
    <name>A9BT41_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Daci_1966</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="2" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX34606.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012203891.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="ABX34606">
        <property type="protein sequence ID" value="ABX34606"/>
        <property type="gene ID" value="Daci_1966"/>
    </dbReference>
    <dbReference type="GeneID" id="60686334"/>
    <dbReference type="KEGG" id="dac:Daci_1966"/>
    <dbReference type="HOGENOM" id="CLU_1793336_0_0_4"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ABX34606.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="144" mass="15529" checksum="C7D9A2B48AC2D2D4" modified="2008-01-15" version="1">MIKVYVDTGGEMPGLKHLRARGLAGSVHFPYEQRLKRIDTTAKPSNLSWGGSAASHADLAGMSWSDTGEKPMHAAIAKVIGAHNVADVQHLASAHAAGCDAMLTSDKGDIWRHRDELHALLGIRVFHSASEWPDFVVFCENSAS</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="73" xmlns="http://uniprot.org/uniprot">
    <accession>A9BT76</accession>
    <name>A9BT76_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">Protein-tyrosine-phosphatase</fullName>
            <ecNumber evidence="3">3.1.3.48</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="7" type="ordered locus">Daci_2001</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="8" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>H2O + O-phospho-L-tyrosyl-[protein] = L-tyrosyl-[protein] + phosphate</text>
            <dbReference type="Rhea" id="RHEA:10684"/>
            <dbReference type="Rhea" id="RHEA-COMP:10136"/>
            <dbReference type="Rhea" id="RHEA-COMP:10137"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:43474"/>
            <dbReference type="ChEBI" id="CHEBI:46858"/>
            <dbReference type="ChEBI" id="CHEBI:82620"/>
            <dbReference type="EC" id="3.1.3.48"/>
        </reaction>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the low molecular weight phosphotyrosine protein phosphatase family.</text>
    </comment>
    <dbReference type="EC" id="3.1.3.48" evidence="3"/>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX34641.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_2001"/>
    <dbReference type="PRIDE" id="A9BT76"/>
    <dbReference type="EnsemblBacteria" id="ABX34641">
        <property type="protein sequence ID" value="ABX34641"/>
        <property type="gene ID" value="Daci_2001"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_2001"/>
    <dbReference type="eggNOG" id="COG0394">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_071415_2_2_4"/>
    <dbReference type="OMA" id="TGSWHVG"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004725">
        <property type="term" value="F:protein tyrosine phosphatase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006470">
        <property type="term" value="P:protein dephosphorylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023485">
        <property type="entry name" value="Ptyr_pPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036196">
        <property type="entry name" value="Ptyr_pPase_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017867">
        <property type="entry name" value="Tyr_phospatase_low_mol_wt"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01451">
        <property type="entry name" value="LMWPc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00719">
        <property type="entry name" value="LMWPTPASE"/>
    </dbReference>
    <dbReference type="SMART" id="SM00226">
        <property type="entry name" value="LMWPc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52788">
        <property type="entry name" value="SSF52788"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="5" id="KW-0904">Protein phosphatase</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="LMWPc" evidence="6">
        <location>
            <begin position="18"/>
            <end position="167"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001490"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00011063"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00013064"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022912"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="SMART" id="SM00226"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="ABX34641.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="175" mass="19384" checksum="5CB2F1A43017B9A8" modified="2008-01-15" version="1">MEQIREQSAGSRPATKRKRILMVCTGNICRSPTAHGVLEKMVADAGLADRIEVDSAGTHDYHVGEAPDRRSQAHAARRGYDLSQQRARQLRAEDFTAFDQVLVMDGANESAARRICPESEWHRVQRLTDFCTEHSAREVPDPYYGGDRGFEDVLDLVEDACAGLLATLGMAPRKG</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="55" xmlns="http://uniprot.org/uniprot">
    <accession>A9BT95</accession>
    <name>A9BT95_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">SnoaL-like domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_2020</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX34660.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012203945.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_2020"/>
    <dbReference type="PRIDE" id="A9BT95"/>
    <dbReference type="EnsemblBacteria" id="ABX34660">
        <property type="protein sequence ID" value="ABX34660"/>
        <property type="gene ID" value="Daci_2020"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_2020"/>
    <dbReference type="eggNOG" id="COG3631">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_155955_0_0_4"/>
    <dbReference type="OMA" id="MVDVFTF"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR032710">
        <property type="entry name" value="NTF2-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037401">
        <property type="entry name" value="SnoaL-like"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12680">
        <property type="entry name" value="SnoaL_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54427">
        <property type="entry name" value="SSF54427"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="SnoaL-like" evidence="1">
        <location>
            <begin position="14"/>
            <end position="117"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF12680"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX34660.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="132" mass="14634" checksum="B96D0E3E41908F71" modified="2008-01-15" version="1">MSADTNPPDAQFLARFAEAWNRHDIEALMGFMADECEFHAVAGPDLMGRSFVGRQAVREGFQMAWQAFPDAAWLDGDHFVHGDRGVSESTFRGTKADGLRVEARMVDVFTFKDGKIAVKNAFRKDRPPVAAA</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-01-19" version="43" xmlns="http://uniprot.org/uniprot">
    <accession>A9BTD1</accession>
    <name>A9BTD1_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Putative secreted protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_2056</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX34696.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012203979.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_2056"/>
    <dbReference type="EnsemblBacteria" id="ABX34696">
        <property type="protein sequence ID" value="ABX34696"/>
        <property type="gene ID" value="Daci_2056"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_2056"/>
    <dbReference type="eggNOG" id="ENOG5032K1E">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_090581_0_0_4"/>
    <dbReference type="OMA" id="VRMPPHL"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="1">
        <location>
            <begin position="1"/>
            <end position="22"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5002735078" evidence="1">
        <location>
            <begin position="23"/>
            <end position="219"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX34696.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="219" mass="22522" checksum="2B40BDDF074B2245" modified="2008-01-15" version="1">MSRFVLSSAVLWLGSSALNAHAVPPGGFAPAGPGAPHAQAVLESAVARLLTNPYGEVDGLRLTDGTVVRFPPHMSDALTAAVKVGDTVRIIGRSEAGGAVKADAIVNSASGQTVYDQPPARDGARPMPPHLRMAGLQTQQAQGRIDVVLTGPRGDANGVILSDGAIVRFAPHALQQPLQQGQLFAASGLGTRNAHGTSLEATSMGASLSDLQPLYDRAR</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="61" xmlns="http://uniprot.org/uniprot">
    <accession>A9BTE5</accession>
    <name>A9BTE5_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Proteasome-type protease-like protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_2273</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX34913.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012204196.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_2273"/>
    <dbReference type="PRIDE" id="A9BTE5"/>
    <dbReference type="EnsemblBacteria" id="ABX34913">
        <property type="protein sequence ID" value="ABX34913"/>
        <property type="gene ID" value="Daci_2273"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_2273"/>
    <dbReference type="eggNOG" id="COG3484">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_066183_0_0_4"/>
    <dbReference type="OMA" id="TYCVAMR"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000502">
        <property type="term" value="C:proteasome complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008233">
        <property type="term" value="F:peptidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006508">
        <property type="term" value="P:proteolysis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.60.20.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029055">
        <property type="entry name" value="Ntn_hydrolases_N"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56235">
        <property type="entry name" value="SSF56235"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="2" id="KW-0645">Protease</keyword>
    <keyword evidence="2" id="KW-0647">Proteasome</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="258"/>
            <end position="352"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="297"/>
            <end position="312"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX34913.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="352" mass="38177" checksum="8074F50250FA75BB" modified="2008-01-15" version="1">MTYCVAIKLNAGLVFLADSRTNAGLDQISSFRKLMVYENPGDRFMVLLSAGNLSITQSVRELLESQQLRDEATGDMLTIWNVRSMFDAARVLGAAVRHVYERDGVALSRSGVDFNISLVLGGQIQGETMRLFQVYSAGNFIEATSETPYFQIGESKYGKPVLDRVITPRTPLDEAAKCALVSMDSTLKSNLSVGLPLDLIVYEKDRFASDKIVSIDESNPYFRMLHDSWGERLRHVFDSIEDPAWDGGASEVPIRVHSRQAQPLTKVNAPAGALRSSARSMGRLPPAALRQPYHSGTGAGLGTSTADGLATSPMTPLQPGPASPMRPDAGQPSGHQQGMPDAPDRTGQEPQP</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="67" xmlns="http://uniprot.org/uniprot">
    <accession>A9BTJ4</accession>
    <name>A9BTJ4_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">5-carboxymethyl-2-hydroxymuconate Delta-isomerase</fullName>
            <ecNumber evidence="2">5.3.3.10</ecNumber>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_2324</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EC" id="5.3.3.10" evidence="2"/>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX34962.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012204244.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_2324"/>
    <dbReference type="PRIDE" id="A9BTJ4"/>
    <dbReference type="EnsemblBacteria" id="ABX34962">
        <property type="protein sequence ID" value="ABX34962"/>
        <property type="gene ID" value="Daci_2324"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_2324"/>
    <dbReference type="eggNOG" id="COG0179">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_028458_3_4_4"/>
    <dbReference type="OMA" id="PPEPIIF"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008704">
        <property type="term" value="F:5-carboxymethyl-2-hydroxymuconate delta-isomerase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.850.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011234">
        <property type="entry name" value="Fumarylacetoacetase-like_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036663">
        <property type="entry name" value="Fumarylacetoacetase_C_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01557">
        <property type="entry name" value="FAA_hydrolase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56529">
        <property type="entry name" value="SSF56529"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0413">Isomerase</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="FAA_hydrolase" evidence="1">
        <location>
            <begin position="73"/>
            <end position="279"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF01557"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX34962.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="279" mass="30524" checksum="91C9E962D8DC03D0" modified="2008-01-15" version="1">MKLLRFGPEGQEKPGLLDAEGQIRDLSALLDDYTPRLLGRKALRALAAIDPARLPLVQGPVRIGMPWSGMSKFVAIGLNYRDHAEEAGMPIPKEPILFAKWPSCACGPDDDIPLPEGSTRMDWEVELGIVIGERARNVSVADALEHVAGYCLANDVSEREYQIDRSGGQWSKGKGFDRFGPIGPWLVTRDEVPDPQALQLWLDVNGERRQSGSTRTMIFGCAELISHCSRVMTLEPGDLIITGTPPGVGMGMKPPRYLKAGDVMELGIEGLGVQRQRVV</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="81" xmlns="http://uniprot.org/uniprot">
    <accession>A9BTP0</accession>
    <name>A9BTP0_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="11">Molybdopterin oxidoreductase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="11" type="ordered locus">Daci_2370</name>
    </gene>
    <organism evidence="11 12">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="11 12" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="12">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="12" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="12">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>Mo-bis(molybdopterin guanine dinucleotide)</name>
            <dbReference type="ChEBI" id="CHEBI:60539"/>
        </cofactor>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="2">
            <name>[4Fe-4S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:49883"/>
        </cofactor>
    </comment>
    <comment type="similarity">
        <text evidence="3">Belongs to the prokaryotic molybdopterin-containing oxidoreductase family. NasA/NapA/NarB subfamily.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX35008.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012204290.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_2370"/>
    <dbReference type="PRIDE" id="A9BTP0"/>
    <dbReference type="EnsemblBacteria" id="ABX35008">
        <property type="protein sequence ID" value="ABX35008"/>
        <property type="gene ID" value="Daci_2370"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_2370"/>
    <dbReference type="eggNOG" id="COG0243">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="eggNOG" id="COG1251">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_000422_13_4_4"/>
    <dbReference type="OMA" id="NLAWCHP"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051539">
        <property type="term" value="F:4 iron, 4 sulfur cluster binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043546">
        <property type="term" value="F:molybdopterin cofactor binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016491">
        <property type="term" value="F:oxidoreductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0042128">
        <property type="term" value="P:nitrate assimilation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd02791">
        <property type="entry name" value="MopB_CT_Nitrate-R-NapA-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.1100">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009010">
        <property type="entry name" value="Asp_de-COase-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007419">
        <property type="entry name" value="BFD-like_2Fe2S-bd_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041854">
        <property type="entry name" value="BFD-like_2Fe2S-bd_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041957">
        <property type="entry name" value="CT_Nitrate-R-NapA-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006657">
        <property type="entry name" value="MoPterin_dinucl-bd_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006656">
        <property type="entry name" value="Mopterin_OxRdtase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006963">
        <property type="entry name" value="Mopterin_OxRdtase_4Fe-4S_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006655">
        <property type="entry name" value="Mopterin_OxRdtase_prok_CS"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04324">
        <property type="entry name" value="Fer2_BFD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04879">
        <property type="entry name" value="Molybdop_Fe4S4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00384">
        <property type="entry name" value="Molybdopterin"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01568">
        <property type="entry name" value="Molydop_binding"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00926">
        <property type="entry name" value="Molybdop_Fe4S4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50692">
        <property type="entry name" value="SSF50692"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51669">
        <property type="entry name" value="4FE4S_MOW_BIS_MGD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00490">
        <property type="entry name" value="MOLYBDOPTERIN_PROK_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="9" id="KW-0004">4Fe-4S</keyword>
    <keyword evidence="6 9" id="KW-0408">Iron</keyword>
    <keyword evidence="7 9" id="KW-0411">Iron-sulfur</keyword>
    <keyword evidence="5 9" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="4" id="KW-0500">Molybdenum</keyword>
    <keyword evidence="8" id="KW-0534">Nitrate assimilation</keyword>
    <keyword evidence="12" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="4Fe-4S Mo/W bis-MGD-type" evidence="10">
        <location>
            <begin position="1"/>
            <end position="57"/>
        </location>
    </feature>
    <feature type="binding site" evidence="9">
        <location>
            <position position="8"/>
        </location>
        <ligand>
            <name>[4Fe-4S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:49883"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="9">
        <location>
            <position position="11"/>
        </location>
        <ligand>
            <name>[4Fe-4S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:49883"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="9">
        <location>
            <position position="15"/>
        </location>
        <ligand>
            <name>[4Fe-4S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:49883"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="9">
        <location>
            <position position="43"/>
        </location>
        <ligand>
            <name>[4Fe-4S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:49883"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001942"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00001966"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00008747"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022505"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023004"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023014"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00023063"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU01004"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="10">
        <source>
            <dbReference type="PROSITE" id="PS51669"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="EMBL" id="ABX35008.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="954" mass="102559" checksum="3391FDAB6C058C25" modified="2008-01-15" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="77" xmlns="http://uniprot.org/uniprot">
    <accession>A9BTQ4</accession>
    <name>A9BTQ4_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="8">Resolvase domain</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="8" type="ordered locus">Daci_2680</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="9" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the site-specific recombinase resolvase family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX35318.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_001162010.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_2680"/>
    <dbReference type="PRIDE" id="A9BTQ4"/>
    <dbReference type="EnsemblBacteria" id="ABX35318">
        <property type="protein sequence ID" value="ABX35318"/>
        <property type="gene ID" value="Daci_2680"/>
    </dbReference>
    <dbReference type="GeneID" id="67375403"/>
    <dbReference type="KEGG" id="dac:Daci_2680"/>
    <dbReference type="eggNOG" id="COG1961">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_010686_8_3_4"/>
    <dbReference type="OMA" id="HLMADST"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000150">
        <property type="term" value="F:DNA strand exchange activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015074">
        <property type="term" value="P:DNA integration"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.1390">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009057">
        <property type="entry name" value="Homeobox-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006118">
        <property type="entry name" value="Recombinase_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006119">
        <property type="entry name" value="Resolv_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036162">
        <property type="entry name" value="Resolvase-like_N_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006120">
        <property type="entry name" value="Resolvase_HTH_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02796">
        <property type="entry name" value="HTH_7"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00239">
        <property type="entry name" value="Resolvase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00857">
        <property type="entry name" value="Resolvase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46689">
        <property type="entry name" value="SSF46689"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53041">
        <property type="entry name" value="SSF53041"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00397">
        <property type="entry name" value="RECOMBINASES_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00398">
        <property type="entry name" value="RECOMBINASES_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51736">
        <property type="entry name" value="RECOMBINASES_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2" id="KW-0229">DNA integration</keyword>
    <keyword evidence="4" id="KW-0233">DNA recombination</keyword>
    <keyword evidence="3" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Resolvase/invertase-type recombinase catalytic" evidence="7">
        <location>
            <begin position="4"/>
            <end position="137"/>
        </location>
    </feature>
    <feature type="active site" description="O-(5'-phospho-DNA)-serine intermediate" evidence="5 6">
        <location>
            <position position="12"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00009913"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022908"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023172"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="PIRSR" id="PIRSR606118-50"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU10137"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="PROSITE" id="PS51736"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="ABX35318.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="185" mass="21223" checksum="D1A1627420ABE45C" modified="2008-01-15" version="1">MQGQRIGYVRVSSFDQNPDRQLEQIEVGKVFTDKASGKDTQRPELERLLAFVREGDTVVVHSMDRLARNLDDLRRIVQGLTQRGVRMEFVKEGLTFTGEDSPMANLMLSVMGAFAEFERALIRERQREGIVLAKQRGAYRGRKKSLNSEQIAELKRRVAAGDQKTLVARDFGISRETLYQYLRED</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="62" xmlns="http://uniprot.org/uniprot">
    <accession>A9BTW4</accession>
    <name>A9BTW4_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="8">UBA/THIF-type NAD/FAD binding protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="8" type="ordered locus">Daci_2740</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="9" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX35378.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_003056220.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_2740"/>
    <dbReference type="PRIDE" id="A9BTW4"/>
    <dbReference type="EnsemblBacteria" id="ABX35378">
        <property type="protein sequence ID" value="ABX35378"/>
        <property type="gene ID" value="Daci_2740"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_2740"/>
    <dbReference type="eggNOG" id="COG0476">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="eggNOG" id="COG1310">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_021897_0_0_4"/>
    <dbReference type="OMA" id="WEPVRRD"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008237">
        <property type="term" value="F:metallopeptidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008641">
        <property type="term" value="F:ubiquitin-like modifier activating enzyme activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006508">
        <property type="term" value="P:proteolysis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR028090">
        <property type="entry name" value="JAB_dom_prok"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR032865">
        <property type="entry name" value="Prok-E2_A"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000594">
        <property type="entry name" value="ThiF_NAD_FAD-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035985">
        <property type="entry name" value="Ubiquitin-activating_enz"/>
    </dbReference>
    <dbReference type="Pfam" id="PF14457">
        <property type="entry name" value="Prok-E2_A"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF14464">
        <property type="entry name" value="Prok-JAB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00899">
        <property type="entry name" value="ThiF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF69572">
        <property type="entry name" value="SSF69572"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="2" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="5" id="KW-0482">Metalloprotease</keyword>
    <keyword evidence="1" id="KW-0645">Protease</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4" id="KW-0862">Zinc</keyword>
    <feature type="domain" description="ThiF" evidence="6">
        <location>
            <begin position="363"/>
            <end position="470"/>
        </location>
    </feature>
    <feature type="domain" description="Prok-JAB" evidence="7">
        <location>
            <begin position="626"/>
            <end position="734"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022670"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022833"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023049"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="Pfam" id="PF00899"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="Pfam" id="PF14464"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="ABX35378.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="751" mass="79980" checksum="4EE79DBC535CE03C" modified="2008-01-15" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-01-19" version="57" xmlns="http://uniprot.org/uniprot">
    <accession>A9BUD6</accession>
    <name>A9BUD6_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Daci_1194</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="2" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX33839.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_1194"/>
    <dbReference type="EnsemblBacteria" id="ABX33839">
        <property type="protein sequence ID" value="ABX33839"/>
        <property type="gene ID" value="Daci_1194"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_1194"/>
    <dbReference type="eggNOG" id="COG1514">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_097064_0_0_4"/>
    <dbReference type="OMA" id="YRRQPHI"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009097">
        <property type="entry name" value="Cyclic_Pdiesterase"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55144">
        <property type="entry name" value="SSF55144"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ABX33839.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="245" mass="26680" checksum="4844E62713F8C8F3" modified="2008-01-15" version="1">MPLLPHFLQSHAIASASASSSAAGASDDWSGWHLGRRRYAVWVLELQALGPAEGEAVRRACAQARQALDAALVPRYERQLHVTLATAGFLDGDAALPDAYGAAELSRDLRALQDLPAAPLQLEFGGWGSFEMAPYLQVRDRSQGGPTLGMLHGALRPARPELALTEALRPYVPHVTLGAWNAAWPRAQVLQWISGLPVLEHWQAAVGEIALVSYAANALHGPLTCHARYDLRGRRLQWRERPGWA</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="49" xmlns="http://uniprot.org/uniprot">
    <accession>A9BUF6</accession>
    <name>A9BUF6_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="1">CRISPR-associated protein, Csy3 family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Daci_1215</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="2" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX33859.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012203145.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_1215"/>
    <dbReference type="PRIDE" id="A9BUF6"/>
    <dbReference type="EnsemblBacteria" id="ABX33859">
        <property type="protein sequence ID" value="ABX33859"/>
        <property type="gene ID" value="Daci_1215"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_1215"/>
    <dbReference type="eggNOG" id="ENOG502Z7PG">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_063672_0_0_4"/>
    <dbReference type="OMA" id="CNDQDYQ"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013399">
        <property type="entry name" value="CRISPR-assoc_prot_Csy3"/>
    </dbReference>
    <dbReference type="Pfam" id="PF09615">
        <property type="entry name" value="Cas_Csy3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR02566">
        <property type="entry name" value="cas_Csy3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ABX33859.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="342" mass="37145" checksum="468F4AB84F3AC9B3" modified="2008-01-15" version="1">MSSTLKTASVLAFERKLDPSDAVFHAGNWDDRAASASWPSVKLREKSVRGTISNRLKTKDQDPAKLDAAIENPNLQTVDVAALPADADTLKVQFTLRVLSGAGTPSACNSAEYQARLAQTVQTYASAQGFAELANRYAANLANGRFLWRNRVGAESVQVQVVQLKDGKAGQAWSFDALAHNLRTLEQPDEKVASLGSVIAQGLEGKAHVLLQITAFVRLGAGQEVFPSQELILDKGSTKKSKTLYQIGEKGQEVAAIHSQKIGNALRTIDTWYDGAQDLGPIAVEPYGSVTTQGKAWRQPKQKQDFYTLLDDWLLKDKVPPVEQQHFVMAVLIRGGVFGDAS</sequence>
</entry>
<entry dataset="Swiss-Prot" created="2009-03-24" modified="2022-08-03" version="76" xmlns="http://uniprot.org/uniprot">
    <accession>A9BUL6</accession>
    <name>RUVC_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Crossover junction endodeoxyribonuclease RuvC</fullName>
            <ecNumber evidence="1">3.1.21.10</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="1">Holliday junction nuclease RuvC</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="1">Holliday junction resolvase RuvC</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="1" type="primary">ruvC</name>
        <name type="ordered locus">Daci_1480</name>
    </gene>
    <organism>
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference key="1">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain>DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="1">Nuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves the cruciform structure in supercoiled DNA by nicking to strands with the same polarity at sites symmetrically opposed at the junction in the homologous arms and leaves a 5'-terminal phosphate and a 3'-terminal hydroxyl group.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>Endonucleolytic cleavage at a junction such as a reciprocal single-stranded crossover between two homologous DNA duplexes (Holliday junction).</text>
            <dbReference type="EC" id="3.1.21.10"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </cofactor>
        <text evidence="1">Binds 1 Mg(2+) ion per subunit.</text>
    </comment>
    <comment type="similarity">
        <text evidence="1">Belongs to the RuvC family.</text>
    </comment>
    <dbReference type="EC" id="3.1.21.10" evidence="1"/>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX34124.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012203410.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A9BUL6"/>
    <dbReference type="SMR" id="A9BUL6"/>
    <dbReference type="STRING" id="398578.Daci_1480"/>
    <dbReference type="PRIDE" id="A9BUL6"/>
    <dbReference type="EnsemblBacteria" id="ABX34124">
        <property type="protein sequence ID" value="ABX34124"/>
        <property type="gene ID" value="Daci_1480"/>
    </dbReference>
    <dbReference type="GeneID" id="60686018"/>
    <dbReference type="KEGG" id="dac:Daci_1480"/>
    <dbReference type="eggNOG" id="COG0817">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_091257_3_1_4"/>
    <dbReference type="OMA" id="AICHIWR"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008821">
        <property type="term" value="F:crossover junction endodeoxyribonuclease activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000287">
        <property type="term" value="F:magnesium ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003676">
        <property type="term" value="F:nucleic acid binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006310">
        <property type="term" value="P:DNA recombination"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006281">
        <property type="term" value="P:DNA repair"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd16962">
        <property type="entry name" value="RuvC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.420.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00034">
        <property type="entry name" value="RuvC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012337">
        <property type="entry name" value="RNaseH-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036397">
        <property type="entry name" value="RNaseH_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020563">
        <property type="entry name" value="X-over_junc_endoDNase_Mg_BS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002176">
        <property type="entry name" value="X-over_junc_endoDNase_RuvC"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30194">
        <property type="entry name" value="PTHR30194"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02075">
        <property type="entry name" value="RuvC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00696">
        <property type="entry name" value="RSOLVASERUVC"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53098">
        <property type="entry name" value="SSF53098"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00228">
        <property type="entry name" value="ruvC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01321">
        <property type="entry name" value="RUVC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword id="KW-0227">DNA damage</keyword>
    <keyword id="KW-0233">DNA recombination</keyword>
    <keyword id="KW-0234">DNA repair</keyword>
    <keyword id="KW-0378">Hydrolase</keyword>
    <keyword id="KW-0460">Magnesium</keyword>
    <keyword id="KW-0479">Metal-binding</keyword>
    <keyword id="KW-0540">Nuclease</keyword>
    <keyword id="KW-1185">Reference proteome</keyword>
    <feature type="chain" id="PRO_1000090520" description="Crossover junction endodeoxyribonuclease RuvC">
        <location>
            <begin position="1"/>
            <end position="182"/>
        </location>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <position position="7"/>
        </location>
        <ligand>
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <position position="69"/>
        </location>
        <ligand>
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <position position="141"/>
        </location>
        <ligand>
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <position position="144"/>
        </location>
        <ligand>
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000255" key="1">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00034"/>
        </source>
    </evidence>
    <sequence length="182" mass="19184" checksum="289E1DFFE12337C6" modified="2008-01-15" version="1">MRILGIDPGLQTTGFGVIDVDGHRLAYVASGTIRTTGIALGDLPGRLKLLFDGISEVASRYQPDTSAVEIVFVNVNPQSTLLLGQARGAALTALVNAGLPVAEYTALQMKKAMTGHGRAAKSQIQEMVRRLLQLPGLPGTDAADALGLAITHAHAGAAMSKMAEVTQLQRRQHAVYKGGRVY</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="106" xmlns="http://uniprot.org/uniprot">
    <accession>A9BUQ4</accession>
    <name>A9BUQ4_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="13">Molybdate ABC transporter, ATPase subunit</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="13" type="ordered locus">Daci_1518</name>
    </gene>
    <organism evidence="13 14">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="13 14" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="14">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="14" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="14">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX34162.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012203448.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_1518"/>
    <dbReference type="PRIDE" id="A9BUQ4"/>
    <dbReference type="EnsemblBacteria" id="ABX34162">
        <property type="protein sequence ID" value="ABX34162"/>
        <property type="gene ID" value="Daci_1518"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_1518"/>
    <dbReference type="eggNOG" id="COG4148">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_000604_1_1_4"/>
    <dbReference type="OMA" id="SHSILEM"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015412">
        <property type="term" value="F:ABC-type molybdate transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0042888">
        <property type="term" value="F:molybdenum ion transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003593">
        <property type="entry name" value="AAA+_ATPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003439">
        <property type="entry name" value="ABC_transporter-like_ATP-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017871">
        <property type="entry name" value="ABC_transporter-like_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015852">
        <property type="entry name" value="ABC_transpr_ModC"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008995">
        <property type="entry name" value="Mo/tungstate-bd_C_term_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011868">
        <property type="entry name" value="ModC_ABC_ATP-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004606">
        <property type="entry name" value="Mop_domain"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005116">
        <property type="entry name" value="Transp-assoc_OB_typ1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43514:SF9">
        <property type="entry name" value="PTHR43514:SF9"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00005">
        <property type="entry name" value="ABC_tran"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03459">
        <property type="entry name" value="TOBE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00382">
        <property type="entry name" value="AAA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50331">
        <property type="entry name" value="SSF50331"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR02142">
        <property type="entry name" value="modC_ABC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00211">
        <property type="entry name" value="ABC_TRANSPORTER_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50893">
        <property type="entry name" value="ABC_TRANSPORTER_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51866">
        <property type="entry name" value="MOP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="6 9" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="4" id="KW-0997">Cell inner membrane</keyword>
    <keyword evidence="2" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="8" id="KW-0472">Membrane</keyword>
    <keyword evidence="3 10" id="KW-0500">Molybdenum</keyword>
    <keyword evidence="5 9" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="14" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="7" id="KW-1278">Translocase</keyword>
    <keyword evidence="1" id="KW-0813">Transport</keyword>
    <feature type="domain" description="ABC transporter" evidence="11">
        <location>
            <begin position="8"/>
            <end position="252"/>
        </location>
    </feature>
    <feature type="domain" description="Mop" evidence="12">
        <location>
            <begin position="312"/>
            <end position="376"/>
        </location>
    </feature>
    <feature type="binding site" evidence="9">
        <location>
            <begin position="51"/>
            <end position="58"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022448"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022505"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022519"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022967"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00434"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU01213"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="11">
        <source>
            <dbReference type="PROSITE" id="PS50893"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="12">
        <source>
            <dbReference type="PROSITE" id="PS51866"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="13">
        <source>
            <dbReference type="EMBL" id="ABX34162.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="14">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="376" mass="40764" checksum="72681CAFAAD90696" modified="2008-01-15" version="1">MMTAFSASRMSDAAHSHPSSEIIANLALERADFRLDVQLQLPGRGVTALFGPSGCGKTTCLRALAGLERARGRVAVNGEVWQDDAASQWLPTHRRALGYVFQEASLFPHLTVRRNIDYGMRRTPAARRKVSQDQALSLLGIGHLMDRMPSTLSGGERQRVAIARALATSPRVLLMDEPLAALDAQRKAEVLPYLDQLRRELDIPVLYVSHSIDEVARLAQHLVLLKAGGIVAAGATSELLARLDLPLSMGDTAAAMVSAQVQQHDPDAHLSTLCFDGGRLRLVMACPRPIGETVQLRVQARDVSLSLQHPQDSSILNILPATVQELREDGPGQVMVSLQLGPSRLLARITLHSARQLGIAPGMHVFAQIKGMALLD</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="67" xmlns="http://uniprot.org/uniprot">
    <accession>A9BUZ1</accession>
    <name>A9BUZ1_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">UBA/THIF-type NAD/FAD binding protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_1811</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX34453.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012203738.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_1811"/>
    <dbReference type="PRIDE" id="A9BUZ1"/>
    <dbReference type="EnsemblBacteria" id="ABX34453">
        <property type="protein sequence ID" value="ABX34453"/>
        <property type="gene ID" value="Daci_1811"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_1811"/>
    <dbReference type="eggNOG" id="COG0476">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_013325_10_3_4"/>
    <dbReference type="OMA" id="MIYDALE"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008641">
        <property type="term" value="F:ubiquitin-like modifier activating enzyme activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045886">
        <property type="entry name" value="ThiF/MoeB/HesA"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000594">
        <property type="entry name" value="ThiF_NAD_FAD-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035985">
        <property type="entry name" value="Ubiquitin-activating_enz"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10953">
        <property type="entry name" value="PTHR10953"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00899">
        <property type="entry name" value="ThiF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF69572">
        <property type="entry name" value="SSF69572"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="ThiF" evidence="1">
        <location>
            <begin position="9"/>
            <end position="244"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF00899"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX34453.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="250" mass="27039" checksum="02880CF63108043A" modified="2008-01-15" version="1">MNDDQLLRYSRHILLDEIGIEGQERILAAHVLIIGAGGLGAPAALYLGSAGIGRITLVDDDAVDMTNLQRQIAHTTDRVGQPKVESIRTAVHAINPGIRIDCRQQRADDALLDELVPQASLVLDCTDNYRTRHMINAACVRHKVPLVAGAAIRLDGQLMVMDPRDENCACYACVFPPDAQFEEVQCSTMGVFAPVVGVMGTLQAAEALKLIAGFGTPATNRLTMFDSRSLDWSSMQTTRVPECPVCGNKA</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="35" xmlns="http://uniprot.org/uniprot">
    <accession>A9BVA1</accession>
    <name>A9BVA1_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Daci_2125</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="2" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX34765.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012204048.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="PRIDE" id="A9BVA1"/>
    <dbReference type="EnsemblBacteria" id="ABX34765">
        <property type="protein sequence ID" value="ABX34765"/>
        <property type="gene ID" value="Daci_2125"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_2125"/>
    <dbReference type="HOGENOM" id="CLU_134928_0_0_4"/>
    <dbReference type="OMA" id="CHMGAAL"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ABX34765.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="129" mass="13720" checksum="2F417D22C754858F" modified="2008-01-15" version="1">MKTVNPSGRSHRRYSPQHQEVLAVDALCHMGAALGVLELHAERAGSAMVCAARDLLRGYHASADQAVASLQAGDRAAGVLPQLSQDLGYAIEVIDRVNDDAPDDLVLYAVTCLLRSARSFADGQPHESA</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="42" xmlns="http://uniprot.org/uniprot">
    <accession>A9BVA2</accession>
    <name>A9BVA2_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Daci_2126</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="2" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX34766.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_2126"/>
    <dbReference type="PRIDE" id="A9BVA2"/>
    <dbReference type="EnsemblBacteria" id="ABX34766">
        <property type="protein sequence ID" value="ABX34766"/>
        <property type="gene ID" value="Daci_2126"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_2126"/>
    <dbReference type="eggNOG" id="COG0810">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_133806_0_0_4"/>
    <dbReference type="OMA" id="EDWLFND"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ABX34766.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="135" mass="14892" checksum="94AB9DF6EBCB9C42" modified="2008-01-15" version="1">MAAIASLVTACKSPPGPGPRPDEATSSAQLQYRKVAANHLYTRNAERIYKGQLPPMLYAIGVLQVQIDRNGQVQRLHWMRAPSHAPEVVSEIERLVRAAAPFPAPAGAARITYTDTWLWDKSGRFQLDTLTEGQL</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="93" xmlns="http://uniprot.org/uniprot">
    <accession>A9BVI6</accession>
    <name>A9BVI6_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Transcriptional regulator, AraC family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Daci_2415</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="4" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX35053.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012204335.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_2415"/>
    <dbReference type="PRIDE" id="A9BVI6"/>
    <dbReference type="EnsemblBacteria" id="ABX35053">
        <property type="protein sequence ID" value="ABX35053"/>
        <property type="gene ID" value="Daci_2415"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_2415"/>
    <dbReference type="eggNOG" id="COG4977">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_000445_59_0_4"/>
    <dbReference type="OMA" id="GMSTRHF"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003700">
        <property type="term" value="F:DNA-binding transcription factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043565">
        <property type="term" value="F:sequence-specific DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.880">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029062">
        <property type="entry name" value="Class_I_gatase-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002818">
        <property type="entry name" value="DJ-1/PfpI"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009057">
        <property type="entry name" value="Homeobox-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018060">
        <property type="entry name" value="HTH_AraC"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018062">
        <property type="entry name" value="HTH_AraC-typ_CS"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01965">
        <property type="entry name" value="DJ-1_PfpI"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12833">
        <property type="entry name" value="HTH_18"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00342">
        <property type="entry name" value="HTH_ARAC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46689">
        <property type="entry name" value="SSF46689"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52317">
        <property type="entry name" value="SSF52317"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00041">
        <property type="entry name" value="HTH_ARAC_FAMILY_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01124">
        <property type="entry name" value="HTH_ARAC_FAMILY_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HTH araC/xylS-type" evidence="2">
        <location>
            <begin position="238"/>
            <end position="337"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS01124"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ABX35053.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="345" mass="37266" checksum="75CB7F8B62342B57" modified="2008-01-15" version="1">MDHRHASAHRIDLVVYPGFKALEAIGPMSVFDYANVHLRARGQSDGYEVRVVSQRQGPVRSDTLMSLEATHTLAGLEAAGMGCTVVVVGSRHIEQVLGGSAELVAWLGRVAPRVQRLIALCSGSFFLAEAGLLDGRRAATHWSVTAQLAQRHPRVQVDADAIYLREEIRDGAGSRQLWTSAGVTAGIDLALAVVEEDFGHALALEVARDLVMYLKRPGGQSQFSVPLAAQAAQHGGVQAVQQWVMAHLAEPLTLAQMAEQAHMSERHLRRVFQQETGQSPTAFVESARLEAAKQLLESQAHLPLKTVAARVGLGSEQALRHLFVRHLGITPVAYRDRFGGRGGAG</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="92" xmlns="http://uniprot.org/uniprot">
    <accession>A9BVQ3</accession>
    <name>A9BVQ3_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="15">Cbb3-type cytochrome c oxidase subunit</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="20" type="ordered locus">Daci_2778</name>
    </gene>
    <organism evidence="20 21">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="20 21" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="21">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="21" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="21">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="15">C-type cytochrome. Part of the cbb3-type cytochrome c oxidase complex.</text>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="15 17">
            <name>heme c</name>
            <dbReference type="ChEBI" id="CHEBI:61717"/>
        </cofactor>
        <text evidence="15 17">Binds 2 heme C groups per subunit.</text>
    </comment>
    <comment type="pathway">
        <text evidence="1 15">Energy metabolism; oxidative phosphorylation.</text>
    </comment>
    <comment type="subunit">
        <text evidence="15">Component of the cbb3-type cytochrome c oxidase.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="15">Cell inner membrane</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2 15">Belongs to the CcoP / FixP family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX35416.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012204626.1">
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    </evidence>
    <sequence length="305" mass="33103" checksum="F5FF1C96B8C0EE05" modified="2008-01-15" version="1">MSDFVNNFWSIYVTAITLGGIIGCLLLLYLTARKKVVPSADNTTGHVWDEDLRELNNPMPKWWMWLFIITSVFGFAYLAAYPGLGSFAGKLGWTQLGAYENEMAKARADLEPLYAKFTSMSTEDMAKDPQAMAIGERLFMNNCAQCHGSDARGGKSFPNLTDGDWLHGGTPEKIRETITGGRIGIMPPMAAAVGTPDDVRNLSHYVLSLSGSPHDSLKASLGKSKFTACAACHGMDGKGNQALGAPNLTDDIWLHGWGEAAITAMINNGKHNEMPAQKDKLTEAQIAVLASYVWGMSHKDGAVRQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="57" xmlns="http://uniprot.org/uniprot">
    <accession>A9BVS3</accession>
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        <submittedName>
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            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
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                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
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            <dbReference type="PubMed" id="15240283"/>
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        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
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            <strain evidence="5">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="5" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
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            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
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    </dbReference>
    <proteinExistence type="predicted"/>
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        <location>
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        </location>
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        </location>
    </feature>
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        </source>
    </evidence>
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        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="SMART" id="SM00062"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
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            <dbReference type="EMBL" id="ABX35436.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="305" mass="33382" checksum="D2BAC92D62AB2F11" modified="2008-01-15" version="1">MTPSRPTLKRTALAVTSALIAALLPLAASHAQDSGTLAKIQQAGAITLGYRESSFGFSYLDGDLKPVGYSMDICRRIVDEIKAQLKLPALQVRYQAVTSANRIPLVANGTVDLECGSTTNLVERQKQVAFSPDIFRYNVRMLVRADSGLRSVADLQGKTVATTAGTTSFRLLREADRGRNLDITNLSGKDHSDSFMLVESGRAQAFVLDDILLAGQIANAKNPQDYLITGESLRTENQALMLRKDDAGFKAIVDRVVTGMMQSGEMEKLYNRWFMSPIPPRNININYPLNAETREAFAHPSSKGI</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="47" xmlns="http://uniprot.org/uniprot">
    <accession>A9BVX8</accession>
    <name>A9BVX8_DELAS</name>
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        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Daci_2853</name>
    </gene>
    <organism evidence="1 2">
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        <lineage>
            <taxon>Bacteria</taxon>
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        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
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                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
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            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="2" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX35491.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_2853"/>
    <dbReference type="PRIDE" id="A9BVX8"/>
    <dbReference type="EnsemblBacteria" id="ABX35491">
        <property type="protein sequence ID" value="ABX35491"/>
        <property type="gene ID" value="Daci_2853"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_2853"/>
    <dbReference type="eggNOG" id="COG3471">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_086898_0_0_4"/>
    <dbReference type="OMA" id="YPRYGKD"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007497">
        <property type="entry name" value="DUF541"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04402">
        <property type="entry name" value="SIMPL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ABX35491.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="289" mass="30903" checksum="0FFE8F9BFB427590" modified="2008-01-15" version="1">MNDGANRPERLHTCHHLAACRSERAACSCIPELPFISKGERMSKLSKQLSRPWVKSVVAATALACASGAWAQNAASAQAQPANVVQLSAEGSVDVVQDLLTATLSATREGRDAATVQSQLQKVVEAAMAVTKRSAQSGQMDVSTGSFGIYPRYGKDNKVEGWQGRAEILLQGRDFARITQTAAQVQDMTLSQVGFGLSREAREKVEGEAQAKAIEQFKQRASTLSKSFGFANYSLREVNVSSSDTSVPMPRPRMMAMSAKAAGAEMDAVSVEAGKAQVMVHVSGSVQMY</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="77" xmlns="http://uniprot.org/uniprot">
    <accession>A9BW42</accession>
    <name>A9BW42_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">DNA helicase</fullName>
            <ecNumber evidence="3">3.6.4.12</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="13" type="ordered locus">Daci_3220</name>
    </gene>
    <organism evidence="13 14">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="13 14" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="14">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="14" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="14">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>ATP + H2O = ADP + H(+) + phosphate</text>
            <dbReference type="Rhea" id="RHEA:13065"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:43474"/>
            <dbReference type="ChEBI" id="CHEBI:456216"/>
            <dbReference type="EC" id="3.6.4.12"/>
        </reaction>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the helicase family. DnaB subfamily.</text>
    </comment>
    <dbReference type="EC" id="3.6.4.12" evidence="3"/>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX35858.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012205058.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_3220"/>
    <dbReference type="PRIDE" id="A9BW42"/>
    <dbReference type="EnsemblBacteria" id="ABX35858">
        <property type="protein sequence ID" value="ABX35858"/>
        <property type="gene ID" value="Daci_3220"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_3220"/>
    <dbReference type="eggNOG" id="COG0305">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_005373_0_1_4"/>
    <dbReference type="OMA" id="MARNEIF"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:1990077">
        <property type="term" value="C:primosome complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003678">
        <property type="term" value="F:DNA helicase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016787">
        <property type="term" value="F:hydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006269">
        <property type="term" value="P:DNA replication, synthesis of RNA primer"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.860.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036185">
        <property type="entry name" value="DNA_heli_DnaB-like_N_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007694">
        <property type="entry name" value="DNA_helicase_DnaB-like_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007693">
        <property type="entry name" value="DNA_helicase_DnaB-like_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016136">
        <property type="entry name" value="DNA_helicase_N/primase_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00772">
        <property type="entry name" value="DnaB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03796">
        <property type="entry name" value="DnaB_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48024">
        <property type="entry name" value="SSF48024"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51199">
        <property type="entry name" value="SF4_HELICASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="9" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="5" id="KW-0235">DNA replication</keyword>
    <keyword evidence="10" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="8 13" id="KW-0347">Helicase</keyword>
    <keyword evidence="7" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="6" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="4" id="KW-0639">Primosome</keyword>
    <keyword evidence="14" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="SF4 helicase" evidence="12">
        <location>
            <begin position="175"/>
            <end position="438"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="11">
        <location>
            <begin position="433"/>
            <end position="456"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001665"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00008428"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00012551"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022515"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022705"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00022806"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="12">
        <source>
            <dbReference type="PROSITE" id="PS51199"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="13">
        <source>
            <dbReference type="EMBL" id="ABX35858.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="14">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="456" mass="49703" checksum="4A78F01383C13A57" modified="2008-01-15" version="1">MNAIDLPEYELLFSNEAECAVLGAILCNGAEAYDAAAGIITAESFCVPLHRLVWEAAQKLILAGKFVDPVAVMEHLRGHGVDLVEVNGIAQSYSTVRAVPGHAEIIANYAKQRALRTAAFQVSGFVSDETLAIEQRVGQSVAALESVLADRIGGDPLPVSAFAAEFIDRLVSRADGESKAGRPTGIPYLDRMMPNGLGDGKLVVIAARPSVGKSSLAQQIACFHASEGYPAAFLGMEMENYEVVDRTVANKGRVPLDGIVTGKLSDDEWTRITEALESIRNLPLYLYDVPGLTLHEVVSKARFLVRKYGIKTLVVDYLQLMLGTDQKKDRRFQLEEITRGLKRAAKQLGITVILLSQLNRDVEKRTNPRPQMSDLKECGAIEEDADVVLTLWDHVKGVDGQPSIKGAALLKNRGGSKGEVALHFEGQYQRWTESTASLSAPAKADTESKPRYSKEW</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-01-19" version="38" xmlns="http://uniprot.org/uniprot">
    <accession>A9BW82</accession>
    <name>A9BW82_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_3260</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX35898.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012205098.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_3260"/>
    <dbReference type="EnsemblBacteria" id="ABX35898">
        <property type="protein sequence ID" value="ABX35898"/>
        <property type="gene ID" value="Daci_3260"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_3260"/>
    <dbReference type="eggNOG" id="ENOG503352I">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_157933_0_0_4"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR032126">
        <property type="entry name" value="LydA_holin"/>
    </dbReference>
    <dbReference type="Pfam" id="PF16083">
        <property type="entry name" value="Phage_holin_3_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="37"/>
            <end position="53"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="60"/>
            <end position="85"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX35898.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="135" mass="14780" checksum="B495B7437E1ECAB8" modified="2008-01-15" version="1">MRIFITLLISLQLVVPIAVWAQSTVKTPLSYTLQEYGIVLGTALLGGLASWWMKVRRGEILAWNLSSLIGELCVSAFAGLVAFWLCEYFTLNPLLTSAIVGMSGHAGAKGLIWVESAGQKVLERKLGIDKQKEDQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="54" xmlns="http://uniprot.org/uniprot">
    <accession>A9BW97</accession>
    <name>A9BW97_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Anti-FecI sigma factor, FecR</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Daci_3275</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="4" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX35913.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012205113.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_3275"/>
    <dbReference type="PRIDE" id="A9BW97"/>
    <dbReference type="EnsemblBacteria" id="ABX35913">
        <property type="protein sequence ID" value="ABX35913"/>
        <property type="gene ID" value="Daci_3275"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_3275"/>
    <dbReference type="eggNOG" id="COG3712">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_050192_0_0_4"/>
    <dbReference type="OMA" id="NAHAYAE"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006860">
        <property type="entry name" value="FecR"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR032623">
        <property type="entry name" value="FecR_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012373">
        <property type="entry name" value="Ferrdict_sens_TM"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30273">
        <property type="entry name" value="PTHR30273"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF16220">
        <property type="entry name" value="DUF4880"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04773">
        <property type="entry name" value="FecR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF018266">
        <property type="entry name" value="FecR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="DUF4880" evidence="2">
        <location>
            <begin position="17"/>
            <end position="59"/>
        </location>
    </feature>
    <feature type="domain" description="FecR" evidence="1">
        <location>
            <begin position="119"/>
            <end position="208"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF04773"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF16220"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ABX35913.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="327" mass="34661" checksum="D32F23C8C298B6A2" modified="2008-01-15" version="1">MQAFPSTSSPISAEVARQAVQWWLQLNSGKAQARQHDGLQRWRAASPEHEAAWQRIESMGSQMAGIPMPLARAALAAPGSAGRRRAVQALAVLLVSGAGSAAVVRSQAWRGWTADQVAAVGEQRTLPLPDGGSVVLNTGSALNLRYGAAERVLELVRGEILVQTAPDSLHRPFIVQTAMGAVQALGTRFTVRQRESAVEVGVLQGAVQLRPAHAPHAPQRIAAGEQGTFTAQQAVHSGALDTAASAWAEGMLVASRMRLEDFLVELGRYRRGRLGCDPAVAGLHVSGAYPLADTDRVLAALTSSLPVEIHSFSRYWVMVRPAGAGKA</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="63" xmlns="http://uniprot.org/uniprot">
    <accession>A9BWD3</accession>
    <name>A9BWD3_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="4">Probable transcriptional regulatory protein Daci_3517</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="5" type="ordered locus">Daci_3517</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="6" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="4">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="1 4">Belongs to the TACO1 family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX36153.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012205353.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_3517"/>
    <dbReference type="PRIDE" id="A9BWD3"/>
    <dbReference type="EnsemblBacteria" id="ABX36153">
        <property type="protein sequence ID" value="ABX36153"/>
        <property type="gene ID" value="Daci_3517"/>
    </dbReference>
    <dbReference type="GeneID" id="60687743"/>
    <dbReference type="KEGG" id="dac:Daci_3517"/>
    <dbReference type="eggNOG" id="COG0217">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_062974_2_2_4"/>
    <dbReference type="OMA" id="CAKNGGF"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006355">
        <property type="term" value="P:regulation of transcription, DNA-templated"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.200">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.70.980">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00693">
        <property type="entry name" value="Transcrip_reg_TACO1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017856">
        <property type="entry name" value="Integrase-like_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002876">
        <property type="entry name" value="Transcrip_reg_TACO1-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR026564">
        <property type="entry name" value="Transcrip_reg_TACO1-like_dom3"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029072">
        <property type="entry name" value="YebC-like"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR12532">
        <property type="entry name" value="PTHR12532"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01709">
        <property type="entry name" value="Transcrip_reg"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF75625">
        <property type="entry name" value="SSF75625"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="4" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 4" id="KW-0804">Transcription</keyword>
    <keyword evidence="2 4" id="KW-0805">Transcription regulation</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00008724"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023015"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023163"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00693"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="ABX36153.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="233" mass="24805" checksum="3735035F43209AB7" modified="2008-01-15" version="1">MGAQWKAKGKALVADAKGKLFGKLAKEIIVAARAGADPAGNSRLRMAVEAARKASMPKDTLERAIKKGSGVGADAVNYERVVYEGYGPNRVPVMIECLTDNVNRTAPNMRVCFRKGQMTAVAWDFDHVGMIEGEPEGGADAELAAIEAGAQDFEPGEEEGTTLFITDPTDLDTVSKALPAQGFKVLSAKLGYKAKTPVSMASLSAEQQEEVQDFLAGIENDDDVQHVYAGLVD</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2020-10-07" version="39" xmlns="http://uniprot.org/uniprot">
    <accession>A9BWH2</accession>
    <name>A9BWH2_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">IPTL-CTERM domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="4" type="ordered locus">Daci_3558</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="5" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX36192.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="ABX36192">
        <property type="protein sequence ID" value="ABX36192"/>
        <property type="gene ID" value="Daci_3558"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_3558"/>
    <dbReference type="eggNOG" id="ENOG50334KT">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_1033359_0_0_4"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR026442">
        <property type="entry name" value="IPTL_CTERM"/>
    </dbReference>
    <dbReference type="Pfam" id="PF18203">
        <property type="entry name" value="IPTL-CTERM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR04174">
        <property type="entry name" value="IPTL_CTERM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0732">Signal</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="signal peptide" evidence="2">
        <location>
            <begin position="1"/>
            <end position="19"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5002735160" description="IPTL-CTERM domain-containing protein" evidence="2">
        <location>
            <begin position="20"/>
            <end position="269"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="247"/>
            <end position="264"/>
        </location>
    </feature>
    <feature type="domain" description="IPTL-CTERM" evidence="3">
        <location>
            <begin position="239"/>
            <end position="266"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF18203"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="ABX36192.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="269" mass="27113" checksum="6AECD79DF9EF6206" modified="2008-01-15" version="1">MKYKIAAALIAFSAFSVQAANVAFFNNPAFVDVAQEGLNLRTTLVSGGHTVSDITGSALADFNTGLSGKTILVIPELQNGDLAAALDAPTRAAIANFVNAGGTVQVHGGTTPNDVNFLNGVFGYSITTNGYASAPSTKTAAAAGTPFASGPASLTSNSATTQVAAAALPAGAKSIYSPDGGTNSVMFTVANGTGQVIFMGWDWFGAPPQGAADGGWLTLASLVSTASATPGGVTPASTASIPTLSEWGLIFMSSILAMVGISRMRRRQR</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="80" xmlns="http://uniprot.org/uniprot">
    <accession>A9BWN1</accession>
    <name>A9BWN1_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Transcriptional regulator, TetR family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ordered locus">Daci_3927</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="5" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX36558.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012205752.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_3927"/>
    <dbReference type="PRIDE" id="A9BWN1"/>
    <dbReference type="EnsemblBacteria" id="ABX36558">
        <property type="protein sequence ID" value="ABX36558"/>
        <property type="gene ID" value="Daci_3927"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_3927"/>
    <dbReference type="eggNOG" id="COG1309">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_069356_28_0_4"/>
    <dbReference type="OMA" id="HARGYDA"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023772">
        <property type="entry name" value="DNA-bd_HTH_TetR-type_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009057">
        <property type="entry name" value="Homeobox-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001647">
        <property type="entry name" value="HTH_TetR"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036271">
        <property type="entry name" value="Tet_transcr_reg_TetR-rel_C_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00440">
        <property type="entry name" value="TetR_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46689">
        <property type="entry name" value="SSF46689"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48498">
        <property type="entry name" value="SSF48498"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01081">
        <property type="entry name" value="HTH_TETR_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50977">
        <property type="entry name" value="HTH_TETR_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0678">Repressor</keyword>
    <feature type="domain" description="HTH tetR-type" evidence="3">
        <location>
            <begin position="7"/>
            <end position="67"/>
        </location>
    </feature>
    <feature type="DNA-binding region" description="H-T-H motif" evidence="2">
        <location>
            <begin position="30"/>
            <end position="49"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022491"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00335"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="PROSITE" id="PS50977"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="ABX36558.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="208" mass="22727" checksum="D98F10E918B7BFD5" modified="2008-01-15" version="1">MAGRPREFDRDQALERAMLAFWRRGYEGTSMADLVQALGIASARIYAAFGSKQDLFREAVQRYEAGDGGFADRAMAQEPRVRDALARVLRDAVATYTDDAHPLGCMVVTAATNCAEENEAVAAWLAEHRRQRTQSLIDRLQRALDEGELRAGTDVQALGDFYATQLHGISVQARDGVPRQRLLAAVQTALLLLDTALEPALQPAAKAG</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-05-25" version="63" xmlns="http://uniprot.org/uniprot">
    <accession>A9BWT0</accession>
    <name>A9BWT0_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="6">Lysine exporter protein (LYSE/YGGA)</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ordered locus">Daci_3976</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="7" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX36607.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012205801.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_3976"/>
    <dbReference type="EnsemblBacteria" id="ABX36607">
        <property type="protein sequence ID" value="ABX36607"/>
        <property type="gene ID" value="Daci_3976"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_3976"/>
    <dbReference type="eggNOG" id="COG1280">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_079569_0_1_4"/>
    <dbReference type="OMA" id="LAVRHWI"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006865">
        <property type="term" value="P:amino acid transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001123">
        <property type="entry name" value="LeuE-type"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30086">
        <property type="entry name" value="PTHR30086"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01810">
        <property type="entry name" value="LysE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF006324">
        <property type="entry name" value="LeuE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="4 5" id="KW-0472">Membrane</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 5" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="3 5" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="6"/>
            <end position="26"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="38"/>
            <end position="62"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="68"/>
            <end position="89"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="115"/>
            <end position="136"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="148"/>
            <end position="170"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="182"/>
            <end position="201"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="ABX36607.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="205" mass="22144" checksum="B941011A7DB442FA" modified="2008-01-15" version="1">MTEWIAVVTITLLAVISPGADFAMVTRNSLLRSRRAGLLTALGIGLGVLVHVGYTLLGVGLLMQQSTWLFDVVKLLGAAYLIYLGVTMLRSRQEDDLPSQPVAALSDMAALRTGFLTNALNPKTTVFVVSLFLQIVGQDTPLATQLAYGGFISLAHVAWFCIVALCFSAQRVRARLLAVRHWIDRAFGGMLVGFGLLLATAKLRL</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="49" xmlns="http://uniprot.org/uniprot">
    <accession>A9BWU3</accession>
    <name>A9BWU3_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_3989</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX36620.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012205814.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_3989"/>
    <dbReference type="PRIDE" id="A9BWU3"/>
    <dbReference type="EnsemblBacteria" id="ABX36620">
        <property type="protein sequence ID" value="ABX36620"/>
        <property type="gene ID" value="Daci_3989"/>
    </dbReference>
    <dbReference type="GeneID" id="60688312"/>
    <dbReference type="KEGG" id="dac:Daci_3989"/>
    <dbReference type="eggNOG" id="ENOG50333RR">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_2011529_0_0_4"/>
    <dbReference type="OMA" id="RAITFAR"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="20"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="1"/>
            <end position="17"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX36620.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="123" mass="13302" checksum="8D6B00A697CF9C31" modified="2008-01-15" version="1">MVDASNASPSRNAVTPPAPTGLNAELWVTSTVEQQQVMQRIAQQRERLKARSAAVAQARALSRSATQVQPDAPLVERAITFARLHPVAVAVAAGAALMVGPRKLLRFGTTVMPLILRWQQRRG</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="69" xmlns="http://uniprot.org/uniprot">
    <accession>A9BWX6</accession>
    <name>A9BWX6_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Pseudouridine synthase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_4330</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX36961.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_4330"/>
    <dbReference type="PRIDE" id="A9BWX6"/>
    <dbReference type="EnsemblBacteria" id="ABX36961">
        <property type="protein sequence ID" value="ABX36961"/>
        <property type="gene ID" value="Daci_4330"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_4330"/>
    <dbReference type="eggNOG" id="COG0564">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_016902_11_1_4"/>
    <dbReference type="OMA" id="HVSQSRM"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0140098">
        <property type="term" value="F:catalytic activity, acting on RNA"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009982">
        <property type="term" value="F:pseudouridine synthase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003723">
        <property type="term" value="F:RNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0034470">
        <property type="term" value="P:ncRNA processing"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="GO" id="GO:0001522">
        <property type="term" value="P:pseudouridine synthesis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd02869">
        <property type="entry name" value="PseudoU_synth_RluA_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020103">
        <property type="entry name" value="PsdUridine_synth_cat_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006224">
        <property type="entry name" value="PsdUridine_synth_RluC/D_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006145">
        <property type="entry name" value="PsdUridine_synth_RsuA/RluA"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00849">
        <property type="entry name" value="PseudoU_synth_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55120">
        <property type="entry name" value="SSF55120"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01129">
        <property type="entry name" value="PSI_RLU"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="PseudoU_synth_2" evidence="1">
        <location>
            <begin position="41"/>
            <end position="196"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF00849"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX36961.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="245" mass="26070" checksum="5C5DD51E88FEE273" modified="2008-01-15" version="1">MSTETPQECIGAGAGAGAGAGAAADADIDAGVSCLYEDAELLVLDKPSGLLCVPGRGPDKQDCLSGRALQRWPDALVVHRLDQATSGLVVMARSLASQRLLSEAFAQRRVHKLYVAVVAGRPAAQQADAWQSIDLPIAADWERRPLRIIDALQGKPSQTLWRAMPAATEGHDTPTTRVQLQPVTGRTHQLRVHMAALGHAILGDALYADAAVQALSPRLLLHAHQLELAHPLSGQTLRFESAVPF</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="78" xmlns="http://uniprot.org/uniprot">
    <accession>A9BX06</accession>
    <name>A9BX06_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Transcriptional regulator, LysR family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Daci_4360</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="4" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the LysR transcriptional regulatory family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX36991.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012206163.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_4360"/>
    <dbReference type="PRIDE" id="A9BX06"/>
    <dbReference type="EnsemblBacteria" id="ABX36991">
        <property type="protein sequence ID" value="ABX36991"/>
        <property type="gene ID" value="Daci_4360"/>
    </dbReference>
    <dbReference type="GeneID" id="60688631"/>
    <dbReference type="KEGG" id="dac:Daci_4360"/>
    <dbReference type="eggNOG" id="COG0583">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_039613_6_5_4"/>
    <dbReference type="OMA" id="IMQMVAH"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003700">
        <property type="term" value="F:DNA-binding transcription factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005119">
        <property type="entry name" value="LysR_subst-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000847">
        <property type="entry name" value="Tscrpt_reg_HTH_LysR"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036390">
        <property type="entry name" value="WH_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00126">
        <property type="entry name" value="HTH_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03466">
        <property type="entry name" value="LysR_substrate"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00039">
        <property type="entry name" value="HTHLYSR"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46785">
        <property type="entry name" value="SSF46785"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50931">
        <property type="entry name" value="HTH_LYSR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HTH lysR-type" evidence="2">
        <location>
            <begin position="1"/>
            <end position="58"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00009437"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS50931"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ABX36991.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="299" mass="32764" checksum="34FDE82C0352221C" modified="2008-01-15" version="1">MNLQQIETFVHVAETGSFSKAAVLLETAQPALSRQVRALETELRETLLIRTGRGVTLTDAGRRLLEHGHAIMQRVALAKEDLGSQRDEPVGRIVVGLPPSLARRLTLPLIDLFSKDMPKARLAVVEGFSMNIAEWLTSGRMDLGLVYTPEPHPHIEVTPVLEERLCLIGPARTLGGRSGVRFDELSQFPLIMPQHGQIFRKLMEAQATLSQVKLNVVWEVSSVPAILDLVRGGYGYAALTDSAMRSHLTDAELVGIPIESPHVVSTLCLAQSAKKKATPLIRKTSLALRELSRLVCAPL</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="70" xmlns="http://uniprot.org/uniprot">
    <accession>A9BX50</accession>
    <name>A9BX50_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="3">NAD(P)H quinone oxidoreductase, PIG3 family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Daci_4404</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="4" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX37035.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_4404"/>
    <dbReference type="PRIDE" id="A9BX50"/>
    <dbReference type="EnsemblBacteria" id="ABX37035">
        <property type="protein sequence ID" value="ABX37035"/>
        <property type="gene ID" value="Daci_4404"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_4404"/>
    <dbReference type="eggNOG" id="COG0604">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_026673_3_4_4"/>
    <dbReference type="OMA" id="RFREHWL"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016491">
        <property type="term" value="F:oxidoreductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd05276">
        <property type="entry name" value="p53_inducible_oxidoreductase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013149">
        <property type="entry name" value="ADH-like_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013154">
        <property type="entry name" value="ADH_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011032">
        <property type="entry name" value="GroES-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036291">
        <property type="entry name" value="NAD(P)-bd_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020843">
        <property type="entry name" value="PKS_ER"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014189">
        <property type="entry name" value="Quinone_OxRdtase_PIG3"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08240">
        <property type="entry name" value="ADH_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00107">
        <property type="entry name" value="ADH_zinc_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00829">
        <property type="entry name" value="PKS_ER"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50129">
        <property type="entry name" value="SSF50129"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51735">
        <property type="entry name" value="SSF51735"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR02824">
        <property type="entry name" value="quinone_pig3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="240"/>
            <end position="261"/>
        </location>
    </feature>
    <feature type="domain" description="PKS_ER" evidence="2">
        <location>
            <begin position="16"/>
            <end position="330"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="SMART" id="SM00829"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ABX37035.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="337" mass="35515" checksum="F2532CE236A27C61" modified="2008-01-15" version="1">MKDSTSMQAIVFDDFGGPEVLVARDVARPEVRPHDLLVRNAAIGVNRADVSHRKGAYGRAHFGESDLMGLEIAGTVVEVGAQVQGFAVGDRVMGIVGGGAYAELSRIDHRMAMHVPESLSLTDAGAVAEVFVTAHEALFHLASLQPGESVLIHAAGSGVGSAAVQLAHAAGARVFATASGDKRDAVTGLGADVFIDYRSEDFQAVVADRTDGKGVDVVVDFIGAPYLERNMRSLGMGGRMVCVGLLGGALAAAVPMDVLLYKHLRIFGTVMKSRPPEVKQAMVQRFAQRWLPALAAGTIRPVIDSTYPLAEAAQAHRRMESGQSVGKLLLIPEQAGQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="90" xmlns="http://uniprot.org/uniprot">
    <accession>A9BX58</accession>
    <name>A9BX58_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="3">4-hydroxythreonine-4-phosphate dehydrogenase</fullName>
            <ecNumber evidence="3">1.1.1.262</ecNumber>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Daci_5505</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="4" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EC" id="1.1.1.262" evidence="3"/>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX38134.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012207303.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_5505"/>
    <dbReference type="PRIDE" id="A9BX58"/>
    <dbReference type="EnsemblBacteria" id="ABX38134">
        <property type="protein sequence ID" value="ABX38134"/>
        <property type="gene ID" value="Daci_5505"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_5505"/>
    <dbReference type="eggNOG" id="COG1995">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_040168_1_0_4"/>
    <dbReference type="OMA" id="TAQVVMM"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0050570">
        <property type="term" value="F:4-hydroxythreonine-4-phosphate dehydrogenase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051287">
        <property type="term" value="F:NAD binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005255">
        <property type="entry name" value="PdxA_fam"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30004">
        <property type="entry name" value="PTHR30004"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04166">
        <property type="entry name" value="PdxA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00557">
        <property type="entry name" value="pdxA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="2 3" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023002"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ABX38134.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="353" mass="37108" checksum="EE5F744B57B434AD" modified="2008-01-15" version="1">MPDSTHPQAAIAITQGDSAGVGPETIAKAFMEVPEVMRDCFVVGELQTLRRAAAVAARARDGDNAIPMPVAVIESAEQLWQVPPHCIPLLELPGLPGPAPWGQVSASAGDAAARCVVWAARAALRGEIAALVTAPLHKEALHAAGVDFPGHTELLQFEAAQHAGVGLDRMPVRMMLANDELRTVLVSIHTSLRKAIDAVTKDNLLQTLRITHEALSRSLGRPPRIGVAGLNPHAGEGGLFGSEEVEIIAPAITQARAEGLDAHGPFAPDTVFMRARNAPGHPGEFDVVLAMYHDQGLIPVKYLGVEKGVNVTLGLPLVRTSPDHGTAFDIAGQGLAEASSLIESVRMARKLAA</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="89" xmlns="http://uniprot.org/uniprot">
    <accession>A9BXA3</accession>
    <name>A9BXA3_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="8">Phosphoribosyl-ATP pyrophosphatase</fullName>
            <shortName evidence="8">PRA-PH</shortName>
            <ecNumber evidence="8">3.6.1.31</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="8" type="primary">hisE</name>
        <name evidence="10" type="ordered locus">Daci_5550</name>
    </gene>
    <organism evidence="10 11">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="10 11" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="11">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="11" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="11">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="1 8">
            <text>1-(5-phospho-beta-D-ribosyl)-ATP + H2O = 1-(5-phospho-beta-D-ribosyl)-5'-AMP + diphosphate + H(+)</text>
            <dbReference type="Rhea" id="RHEA:22828"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:33019"/>
            <dbReference type="ChEBI" id="CHEBI:59457"/>
            <dbReference type="ChEBI" id="CHEBI:73183"/>
            <dbReference type="EC" id="3.6.1.31"/>
        </reaction>
    </comment>
    <comment type="pathway">
        <text evidence="2 8">Amino-acid biosynthesis; L-histidine biosynthesis; L-histidine from 5-phospho-alpha-D-ribose 1-diphosphate: step 2/9.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="8">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="8">Belongs to the PRA-PH family.</text>
    </comment>
    <dbReference type="EC" id="3.6.1.31" evidence="8"/>
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        <property type="protein sequence ID" value="ABX38179.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012207348.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_5550"/>
    <dbReference type="PRIDE" id="A9BXA3"/>
    <dbReference type="EnsemblBacteria" id="ABX38179">
        <property type="protein sequence ID" value="ABX38179"/>
        <property type="gene ID" value="Daci_5550"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_5550"/>
    <dbReference type="eggNOG" id="COG0140">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_123337_1_2_4"/>
    <dbReference type="OMA" id="FTHEKGE"/>
    <dbReference type="UniPathway" id="UPA00031">
        <property type="reaction ID" value="UER00007"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
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        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004636">
        <property type="term" value="F:phosphoribosyl-ATP diphosphatase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000105">
        <property type="term" value="P:histidine biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd11534">
        <property type="entry name" value="NTP-PPase_HisIE_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01020">
        <property type="entry name" value="HisE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008179">
        <property type="entry name" value="HisE"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR021130">
        <property type="entry name" value="PRib-ATP_PPHydrolase-like"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01503">
        <property type="entry name" value="PRA-PH"/>
        <property type="match status" value="1"/>
    </dbReference>
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        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3 8" id="KW-0028">Amino-acid biosynthesis</keyword>
    <keyword evidence="6 8" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="8" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="7 8" id="KW-0368">Histidine biosynthesis</keyword>
    <keyword evidence="5 8" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="4 8" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="11" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="9">
        <location>
            <begin position="112"/>
            <end position="137"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001460"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00005204"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022605"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023102"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01020"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="EMBL" id="ABX38179.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="137" mass="14758" checksum="E78B645CD46476E4" modified="2008-01-15" version="1">MNSTTMNDTANTSSQDALARLAAVIESRKPANGGDPDKSYVARLLHKGPDAFLKKIGEEATEVVMAAKDADHGGDAGKILYEVADLWFHSMIALAHYGLTPAQVVAELERREGTSGIEEKALRKAQERDVNEKGPLP</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="59" xmlns="http://uniprot.org/uniprot">
    <accession>A9BXV8</accession>
    <name>A9BXV8_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Dihydroneopterin aldolase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_1249</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX33893.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012203179.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_1249"/>
    <dbReference type="PRIDE" id="A9BXV8"/>
    <dbReference type="EnsemblBacteria" id="ABX33893">
        <property type="protein sequence ID" value="ABX33893"/>
        <property type="gene ID" value="Daci_1249"/>
    </dbReference>
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    <dbReference type="HOGENOM" id="CLU_112632_0_1_4"/>
    <dbReference type="OMA" id="RVETGQW"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004150">
        <property type="term" value="F:dihydroneopterin aldolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006760">
        <property type="term" value="P:folic acid-containing compound metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.1130.10">
        <property type="match status" value="1"/>
    </dbReference>
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        <property type="entry name" value="FolB_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043133">
        <property type="entry name" value="GTP-CH-I_C/QueF"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02152">
        <property type="entry name" value="FolB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00905">
        <property type="entry name" value="FolB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00526">
        <property type="entry name" value="folB_dom"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="FolB" evidence="1">
        <location>
            <begin position="10"/>
            <end position="120"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="SMART" id="SM00905"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX33893.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="123" mass="13792" checksum="2C62368D8FA11BAD" modified="2008-01-15" version="1">MHSATGQQILTLTGLRFDANLGILAHEKQMPQPIQVDAELSLGTQPLAPRDDDILHVLDYRKVRQIIIDECTAEHVNLLESLIGKLAQRLMQLPGVMGVRVKIAKLEIFEDCEVAIRIETGQW</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="57" xmlns="http://uniprot.org/uniprot">
    <accession>A9BYJ7</accession>
    <name>A9BYJ7_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Thioesterase superfamily protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Daci_1900</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="4" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX34540.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_1900"/>
    <dbReference type="PRIDE" id="A9BYJ7"/>
    <dbReference type="EnsemblBacteria" id="ABX34540">
        <property type="protein sequence ID" value="ABX34540"/>
        <property type="gene ID" value="Daci_1900"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_1900"/>
    <dbReference type="eggNOG" id="COG2050">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_089876_3_0_4"/>
    <dbReference type="OMA" id="VIHCGRQ"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029069">
        <property type="entry name" value="HotDog_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003736">
        <property type="entry name" value="PAAI_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006683">
        <property type="entry name" value="Thioestr_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03061">
        <property type="entry name" value="4HBT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54637">
        <property type="entry name" value="SSF54637"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00369">
        <property type="entry name" value="unchar_dom_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="4HBT" evidence="2">
        <location>
            <begin position="110"/>
            <end position="188"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="24"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF03061"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ABX34540.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="204" mass="21714" checksum="48EF9BFAD925EDED" modified="2008-01-15" version="1">MKERHSMDTRTHSPEQAARNTTSGAISPALQAWLDEEQAVTLRLDAGPGAGVSRPDQVAGRSGLELMQAMLRGELPYPPIARTLDFMLISVGEGNAVFQGRPGANHLNPMGTVHGGWFATLLDSALGCAVHTCMPPGRGYTTAELGVNLVKALTPRVPRVRAEGRVLHCGRQLATAEARLVGPDGTLYAHATTTCLVFEMPPAR</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="38" xmlns="http://uniprot.org/uniprot">
    <accession>A9BYQ5</accession>
    <name>A9BYQ5_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_1958</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX34598.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012203883.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_1958"/>
    <dbReference type="PRIDE" id="A9BYQ5"/>
    <dbReference type="EnsemblBacteria" id="ABX34598">
        <property type="protein sequence ID" value="ABX34598"/>
        <property type="gene ID" value="Daci_1958"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_1958"/>
    <dbReference type="eggNOG" id="ENOG5033MYR">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_543733_0_0_4"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="249"/>
            <end position="268"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="472"/>
            <end position="501"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX34598.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="501" mass="51359" checksum="86227260F655D4AE" modified="2008-01-15" version="1">MAGLLDFLSAPESQLGLGLLAAAGSGQKFGPGLLSAVQYADSQRKGDLQQKLLQAQMDNYQSEIEARKLAAVKDARQQAWIERLMGGSPTQGQGAGFVGAAGASGAAPGAGMPAAGGGGQGGGGILELARSLGIPEQAIQADMAFNGGKGIAAMIEKNGGRDMQVTNGYAYDKNRVGAGFMPSLSTSQDGKTSMVRIGPDGLPVVSAPQGALETFNNYQGVQASYKPIKIYNPETGRDEYTSEGAVVRGARGGAGGGQQDIRSSAYAGGSRASANQESIQILQMEMQQPGRTQAEKDAISREIGRLQFMPKGEGAAPASGNYAAGPSSAEAALSDAARARAVDTAKADVVRDTDNRSKVRNANDNLSNADRAIELLKLGPTGSVIGSLMDSGSAVFGRSTPGGKIAAQLDIVSANMVKNVPRFEGPQSNIDVEGYKSAAGRVADRSLPIDQRIAAAQEVKYFEQKALRQAGGQQTGGATGSWGGSPGGGKSGQVINFSDLK</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="83" xmlns="http://uniprot.org/uniprot">
    <accession>A9BYR8</accession>
    <name>A9BYR8_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Transcriptional regulator, AsnC family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ordered locus">Daci_2173</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="6" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX34813.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012204096.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_2173"/>
    <dbReference type="PRIDE" id="A9BYR8"/>
    <dbReference type="EnsemblBacteria" id="ABX34813">
        <property type="protein sequence ID" value="ABX34813"/>
        <property type="gene ID" value="Daci_2173"/>
    </dbReference>
    <dbReference type="GeneID" id="60686568"/>
    <dbReference type="KEGG" id="dac:Daci_2173"/>
    <dbReference type="eggNOG" id="COG1522">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_091233_0_0_4"/>
    <dbReference type="OMA" id="RPEIMEC"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043565">
        <property type="term" value="F:sequence-specific DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006355">
        <property type="term" value="P:regulation of transcription, DNA-templated"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="CDD" id="cd00090">
        <property type="entry name" value="HTH_ARSR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011991">
        <property type="entry name" value="ArsR-like_HTH"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000485">
        <property type="entry name" value="AsnC-type_HTH_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011008">
        <property type="entry name" value="Dimeric_a/b-barrel"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019888">
        <property type="entry name" value="Tscrpt_reg_AsnC-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019887">
        <property type="entry name" value="Tscrpt_reg_AsnC/Lrp_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036390">
        <property type="entry name" value="WH_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01037">
        <property type="entry name" value="AsnC_trans_reg"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00033">
        <property type="entry name" value="HTHASNC"/>
    </dbReference>
    <dbReference type="SMART" id="SM00344">
        <property type="entry name" value="HTH_ASNC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46785">
        <property type="entry name" value="SSF46785"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54909">
        <property type="entry name" value="SSF54909"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50956">
        <property type="entry name" value="HTH_ASNC_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0804">Transcription</keyword>
    <keyword evidence="1" id="KW-0805">Transcription regulation</keyword>
    <feature type="domain" description="HTH asnC-type" evidence="4">
        <location>
            <begin position="5"/>
            <end position="66"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023015"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023163"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="PROSITE" id="PS50956"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="ABX34813.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="156" mass="17562" checksum="67141E75E9F51654" modified="2008-01-15" version="1">MSIEIDRTDRLLIRALQDNARLTSGELAQRVHLSQSPSWRRIKRLEDEGVITGYHAALSRRAIGFGVLAFVMVGIDHQNEESSRHFQEAVCAIPEVVMFHGISGPEDFLLVVVARDLDAYSDLLLTRLHRLPGVRQVHTHFSLQEFKGQLAGLPVE</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="87" xmlns="http://uniprot.org/uniprot">
    <accession>A9BZ42</accession>
    <name>A9BZ42_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="5">Peptidyl-prolyl cis-trans isomerase</fullName>
            <shortName evidence="5">PPIase</shortName>
            <ecNumber evidence="5">5.2.1.8</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="7" type="ordered locus">Daci_2504</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="8" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="1 5">PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="5">
            <text>[protein]-peptidylproline (omega=180) = [protein]-peptidylproline (omega=0)</text>
            <dbReference type="Rhea" id="RHEA:16237"/>
            <dbReference type="Rhea" id="RHEA-COMP:10747"/>
            <dbReference type="Rhea" id="RHEA-COMP:10748"/>
            <dbReference type="ChEBI" id="CHEBI:83833"/>
            <dbReference type="ChEBI" id="CHEBI:83834"/>
            <dbReference type="EC" id="5.2.1.8"/>
        </reaction>
    </comment>
    <comment type="similarity">
        <text evidence="2 5">Belongs to the cyclophilin-type PPIase family.</text>
    </comment>
    <dbReference type="EC" id="5.2.1.8" evidence="5"/>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX35142.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012204423.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_2504"/>
    <dbReference type="PRIDE" id="A9BZ42"/>
    <dbReference type="EnsemblBacteria" id="ABX35142">
        <property type="protein sequence ID" value="ABX35142"/>
        <property type="gene ID" value="Daci_2504"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_2504"/>
    <dbReference type="eggNOG" id="COG0652">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_012062_16_9_4"/>
    <dbReference type="OMA" id="ELYNDHA"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003755">
        <property type="term" value="F:peptidyl-prolyl cis-trans isomerase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006457">
        <property type="term" value="P:protein folding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000413">
        <property type="term" value="P:protein peptidyl-prolyl isomerization"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.100.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029000">
        <property type="entry name" value="Cyclophilin-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR024936">
        <property type="entry name" value="Cyclophilin-type_PPIase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020892">
        <property type="entry name" value="Cyclophilin-type_PPIase_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002130">
        <property type="entry name" value="Cyclophilin-type_PPIase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR044665">
        <property type="entry name" value="E_coli_cyclophilin_A-like"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43246">
        <property type="entry name" value="PTHR43246"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00160">
        <property type="entry name" value="Pro_isomerase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF001467">
        <property type="entry name" value="Peptidylpro_ismrse"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00153">
        <property type="entry name" value="CSAPPISMRASE"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50891">
        <property type="entry name" value="SSF50891"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00170">
        <property type="entry name" value="CSA_PPIASE_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50072">
        <property type="entry name" value="CSA_PPIASE_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4 5 7" id="KW-0413">Isomerase</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 5" id="KW-0697">Rotamase</keyword>
    <feature type="domain" description="PPIase cyclophilin-type" evidence="6">
        <location>
            <begin position="14"/>
            <end position="167"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00002388"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00007365"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023110"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023235"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="RuleBase" id="RU363019"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="PROSITE" id="PS50072"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="ABX35142.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="168" mass="18160" checksum="7DA7B92919531DBC" modified="2008-01-15" version="1">MSNPQVELHIAGHGVITIELDAAKAPKSAENFLAYVNKGHYNNTIFHRIIDGFMIQGGGFEPGMKQKETDAPIENEAKNGLKNDKYTLAMARTGDPHSATAQFFINVADNGFLNHTSPSAQGWGYAVFGKVVKGTEIVDKLRGVKTGRNGGHQDVPKDDVIIEKAVAL</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="86" xmlns="http://uniprot.org/uniprot">
    <accession>A9BZ43</accession>
    <name>A9BZ43_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">Peptidyl-prolyl cis-trans isomerase</fullName>
            <shortName evidence="2">PPIase</shortName>
            <ecNumber evidence="2">5.2.1.8</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="5" type="ordered locus">Daci_2505</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="6" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="2">PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="2">
            <text>[protein]-peptidylproline (omega=180) = [protein]-peptidylproline (omega=0)</text>
            <dbReference type="Rhea" id="RHEA:16237"/>
            <dbReference type="Rhea" id="RHEA-COMP:10747"/>
            <dbReference type="Rhea" id="RHEA-COMP:10748"/>
            <dbReference type="ChEBI" id="CHEBI:83833"/>
            <dbReference type="ChEBI" id="CHEBI:83834"/>
            <dbReference type="EC" id="5.2.1.8"/>
        </reaction>
    </comment>
    <comment type="similarity">
        <text evidence="1 2">Belongs to the cyclophilin-type PPIase family.</text>
    </comment>
    <dbReference type="EC" id="5.2.1.8" evidence="2"/>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX35143.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_2505"/>
    <dbReference type="PRIDE" id="A9BZ43"/>
    <dbReference type="EnsemblBacteria" id="ABX35143">
        <property type="protein sequence ID" value="ABX35143"/>
        <property type="gene ID" value="Daci_2505"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_2505"/>
    <dbReference type="eggNOG" id="COG0652">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_012062_16_9_4"/>
    <dbReference type="OMA" id="LQADICY"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003755">
        <property type="term" value="F:peptidyl-prolyl cis-trans isomerase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006457">
        <property type="term" value="P:protein folding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000413">
        <property type="term" value="P:protein peptidyl-prolyl isomerization"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.100.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029000">
        <property type="entry name" value="Cyclophilin-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020892">
        <property type="entry name" value="Cyclophilin-type_PPIase_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002130">
        <property type="entry name" value="Cyclophilin-type_PPIase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR044665">
        <property type="entry name" value="E_coli_cyclophilin_A-like"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43246">
        <property type="entry name" value="PTHR43246"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00160">
        <property type="entry name" value="Pro_isomerase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00153">
        <property type="entry name" value="CSAPPISMRASE"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50891">
        <property type="entry name" value="SSF50891"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00170">
        <property type="entry name" value="CSA_PPIASE_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50072">
        <property type="entry name" value="CSA_PPIASE_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2 5" id="KW-0413">Isomerase</keyword>
    <keyword evidence="3" id="KW-0472">Membrane</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0697">Rotamase</keyword>
    <keyword evidence="3" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="3" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="3">
        <location>
            <begin position="33"/>
            <end position="55"/>
        </location>
    </feature>
    <feature type="domain" description="PPIase cyclophilin-type" evidence="4">
        <location>
            <begin position="66"/>
            <end position="220"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00007365"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="RuleBase" id="RU363019"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="PROSITE" id="PS50072"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="ABX35143.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="222" mass="23991" checksum="7972D6E0A97C8966" modified="2008-01-15" version="1">MPGAHPQEPARFSPLHPPALWLSQEIRMTTRRIASLSLAGMALAASLFTALPAMAQNATPKVQIKTSMGDIVLELNEAKAPKTVANFMQYVRDKHYDGTVFHRVMDGFMIQGGGMDASLKEKPTRAPIPLEADNGLKNDRGTIAMARTGNPNSATSQFFINVVNNDMLNAPKPDGHGYAVFGRVVQGMDVVDKIRTVATGNQGMHQNVPTKPVTILSATEVK</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-05-25" version="46" xmlns="http://uniprot.org/uniprot">
    <accession>A9BZA3</accession>
    <name>A9BZA3_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_2565</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX35203.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012204482.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_2565"/>
    <dbReference type="EnsemblBacteria" id="ABX35203">
        <property type="protein sequence ID" value="ABX35203"/>
        <property type="gene ID" value="Daci_2565"/>
    </dbReference>
    <dbReference type="GeneID" id="60686930"/>
    <dbReference type="KEGG" id="dac:Daci_2565"/>
    <dbReference type="eggNOG" id="ENOG5032Y3R">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_190515_0_0_4"/>
    <dbReference type="OMA" id="EMAFTRW"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR021249">
        <property type="entry name" value="DUF2788"/>
    </dbReference>
    <dbReference type="Pfam" id="PF10981">
        <property type="entry name" value="DUF2788"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="12"/>
            <end position="33"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="45"/>
            <end position="68"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX35203.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="70" mass="8003" checksum="CA397ABF8B2D586E" modified="2008-01-15" version="1">MIFGYTEEQIAHFFLTYGVGAFILFMVFIILQLARQSKAGKFGTFVIFLGLGVGFVGYIAKIVIQWWMEK</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="65" xmlns="http://uniprot.org/uniprot">
    <accession>A9BZH5</accession>
    <name>A9BZH5_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">AMP-dependent synthetase and ligase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_2937</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX35575.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012204785.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_2937"/>
    <dbReference type="PRIDE" id="A9BZH5"/>
    <dbReference type="EnsemblBacteria" id="ABX35575">
        <property type="protein sequence ID" value="ABX35575"/>
        <property type="gene ID" value="Daci_2937"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_2937"/>
    <dbReference type="eggNOG" id="COG1020">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_000022_2_12_4"/>
    <dbReference type="OMA" id="ANAPYYY"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016874">
        <property type="term" value="F:ligase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.300.30">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.12780">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045851">
        <property type="entry name" value="AMP-bd_C_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020845">
        <property type="entry name" value="AMP-binding_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000873">
        <property type="entry name" value="AMP-dep_Synth/Lig"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR042099">
        <property type="entry name" value="ANL_N_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00501">
        <property type="entry name" value="AMP-binding"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00455">
        <property type="entry name" value="AMP_BINDING"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0436">Ligase</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="AMP-binding" evidence="1">
        <location>
            <begin position="18"/>
            <end position="376"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF00501"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX35575.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="494" mass="54593" checksum="82F5419B40B2600F" modified="2008-01-15" version="1">MRFSFDRFDFTEPGADTARPAVIDAAGTLDWQQLAQAVAQWEQQALARGARRDEPLLITGHKETAFLVAILGCLRLGVPFVPVDVINPPERMARIATLVQAGLHYDAQARSFLDTGIAAQPLQEKSLAYIMFTSGSTGDPKGVQIGRESLGLFAGWIRDCLALGEAPVFMDQMLFSFDFSLFNWMGALVTGGACVLCARETIADRQAFAAYLAGTHVNVWASTPSFVRQQLLDADFDQQHLPDLRVFVFGAESLTPTVAEALWSRFPQARIINSYGPTEATCSTTWVEIDPALRQRAPLPFPIGRAKPYADVFLDEGEICVAGDHVMRGYLNRPDLHATRMFMRNGKRGYRTGDLGEIDGEGLVTFHGRRDDQIKMHGYRIELAEVDAVLATLPGVRAGAAVALKRPDGFIVRMIGFVDLDRSGPPGMQPLPEDLAGWRELLAQRVPPYMIPSELLACHGFPLTQTDKADRKQLERMYLDARMRPAKETKDPQA</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="78" xmlns="http://uniprot.org/uniprot">
    <accession>A9BZT2</accession>
    <name>A9BZT2_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="19">PQQ-dependent dehydrogenase, methanol/ethanol family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="19" type="ordered locus">Daci_3352</name>
    </gene>
    <organism evidence="19 20">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="19 20" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="20">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="20" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="20">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>Ca(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29108"/>
        </cofactor>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="2">
            <name>pyrroloquinoline quinone</name>
            <dbReference type="ChEBI" id="CHEBI:58442"/>
        </cofactor>
    </comment>
    <comment type="similarity">
        <text evidence="3">Belongs to the bacterial PQQ dehydrogenase family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX35990.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012205190.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_3352"/>
    <dbReference type="PRIDE" id="A9BZT2"/>
    <dbReference type="EnsemblBacteria" id="ABX35990">
        <property type="protein sequence ID" value="ABX35990"/>
        <property type="gene ID" value="Daci_3352"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_3352"/>
    <dbReference type="eggNOG" id="COG2010">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="eggNOG" id="COG4993">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_018478_0_1_4"/>
    <dbReference type="OMA" id="DIANDHL"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016020">
        <property type="term" value="C:membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030288">
        <property type="term" value="C:outer membrane-bounded periplasmic space"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005509">
        <property type="term" value="F:calcium ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009055">
        <property type="term" value="F:electron transfer activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0020037">
        <property type="term" value="F:heme binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016614">
        <property type="term" value="F:oxidoreductase activity, acting on CH-OH group of donors"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.760.10">
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        </ligand>
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        </ligand>
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        </source>
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    <sequence length="707" mass="76779" checksum="72F338BABDF8B9D0" modified="2008-01-15" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="50" xmlns="http://uniprot.org/uniprot">
    <accession>A9BZX1</accession>
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            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
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                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
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        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
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            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="4" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
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            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
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            <begin position="30"/>
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        <location>
            <begin position="72"/>
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    </feature>
    <evidence type="ECO:0000256" key="1">
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            <dbReference type="SAM" id="MobiDB-lite"/>
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        <source>
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    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
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        </source>
    </evidence>
    <sequence length="111" mass="11757" checksum="99EB98E45E1AC8DA" modified="2008-01-15" version="1">MYLVVIAWLYVTLMMAVAEAASPTGSILGAVITFALYGLLPLSIVIYIMGTPARKRKRHARELAEREAWLAQQQVSQSGPGTQARSVLPDAGGEPPAAAQAGSVAPVRKEP</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="81" xmlns="http://uniprot.org/uniprot">
    <accession>A9C038</accession>
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            <taxon>Bacteria</taxon>
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            <taxon>Betaproteobacteria</taxon>
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    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
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                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
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            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="5" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">In the C-terminal section; belongs to the class-I pyridoxal-phosphate-dependent aminotransferase family.</text>
    </comment>
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        <property type="molecule type" value="Genomic_DNA"/>
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        <property type="nucleotide sequence ID" value="NC_010002.1"/>
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    <dbReference type="EnsemblBacteria" id="ABX36300">
        <property type="protein sequence ID" value="ABX36300"/>
        <property type="gene ID" value="Daci_3668"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_3668"/>
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        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
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    <dbReference type="OMA" id="TRINCTH"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003700">
        <property type="term" value="F:DNA-binding transcription factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030170">
        <property type="term" value="F:pyridoxal phosphate binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
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    <dbReference type="GO" id="GO:0008483">
        <property type="term" value="F:transaminase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
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        <property type="term" value="P:biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
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        <property type="entry name" value="WHTH_GntR"/>
        <property type="match status" value="1"/>
    </dbReference>
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        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.640.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004839">
        <property type="entry name" value="Aminotransferase_I/II"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015424">
        <property type="entry name" value="PyrdxlP-dep_Trfase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015421">
        <property type="entry name" value="PyrdxlP-dep_Trfase_major"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000524">
        <property type="entry name" value="Tscrpt_reg_HTH_GntR"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036390">
        <property type="entry name" value="WH_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00155">
        <property type="entry name" value="Aminotran_1_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00392">
        <property type="entry name" value="GntR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00035">
        <property type="entry name" value="HTHGNTR"/>
    </dbReference>
    <dbReference type="SMART" id="SM00345">
        <property type="entry name" value="HTH_GNTR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46785">
        <property type="entry name" value="SSF46785"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53383">
        <property type="entry name" value="SSF53383"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50949">
        <property type="entry name" value="HTH_GNTR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-0032">Aminotransferase</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="HTH gntR-type" evidence="3">
        <location>
            <begin position="45"/>
            <end position="113"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="1"/>
            <end position="27"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00005384"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="PROSITE" id="PS50949"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="ABX36300.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="509" mass="54991" checksum="B273BCCD327910E7" modified="2008-01-15" version="1">MTLTLDPAATLKEAQAQQTPQTSSASSATAFQAAAPWRPLRSSDLSLVEQLVDHYGGLIRHHGLRAGSRLPSVRALAQQAGVSRDTVVQAYDRLAAQGLVHSRRGSGVFVSARRAAQAVPRASHGLPTLEQGAAFDTAFLLRSMFREGTEHSGDAGMLPPEWLDQEMLASALRAVGRSTGTSLLTYGVPQGYLPLRQQIASVLQAQDVPAHPEAHLMTVAGATQGLDLIVRSLVRPGDTVLVEDPGWFLIFGRLNALGVNVVGVPRLPGGPDVEALERLARQHQPRLFILNTAVHNPTGQTLSAGVAHEVLRIAERHDFYLAEDDTYSDFLPGVPVRLAAMDRLQRVLLVGGYSKTLAGSLRVGYVAAHTDLIRRLTDLKLLGGLTTALPGEQVVHRVLADGQYRKHVDRLRERVDRARNRCLRMLEALDCRAPHEPQAGMFAWVDCGVDSEVLARHAAPQGLLLAPGLLFSPRQAAGSMLRIPVPMVEQPQTWKILGHLLAQHRGGGG</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="47" xmlns="http://uniprot.org/uniprot">
    <accession>A9C0F5</accession>
    <name>A9C0F5_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Daci_4090</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="2" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX36721.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012205913.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_4090"/>
    <dbReference type="PRIDE" id="A9C0F5"/>
    <dbReference type="EnsemblBacteria" id="ABX36721">
        <property type="protein sequence ID" value="ABX36721"/>
        <property type="gene ID" value="Daci_4090"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_4090"/>
    <dbReference type="eggNOG" id="COG2369">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_067289_0_0_4"/>
    <dbReference type="OMA" id="ARTETMM"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ABX36721.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="353" mass="38199" checksum="35C25443B00A7973" modified="2008-01-15" version="1">MATRPTMSQARLFAQLIAELSPEVWRAFMASVTDLQSQVDWPTLLDALERMDTPAAIAALHIDPAAWAVYSAKVSEVYAKAAASTIAQIQAQGIGGIGVRFRMTDPSAQEWIRENVANRVVGFSNEQVQVARKVIEAGYAQGQGPRNIAVDLVGRATGGTAREGGVLGLDGPRAARLQAVTQGMRTAEGVRDLVIEHADGTVSVRYKVNEATAKRILKAHKAGTAVPDAERAISERQYRNALLKDRADTVAATETANAVMGGRMEQWRQLVDSGVVDPANVIKTWQHRRGASLYHRPDHLAKSGKSVRGLFTPFVFPDGAQLLHSHDPKGGAKHNIRCGCDTTFRLDHTVGLE</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="44" xmlns="http://uniprot.org/uniprot">
    <accession>A9C0G1</accession>
    <name>A9C0G1_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Daci_4096</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="2" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX36727.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012205919.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_4096"/>
    <dbReference type="PRIDE" id="A9C0G1"/>
    <dbReference type="EnsemblBacteria" id="ABX36727">
        <property type="protein sequence ID" value="ABX36727"/>
        <property type="gene ID" value="Daci_4096"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_4096"/>
    <dbReference type="HOGENOM" id="CLU_1694077_0_0_4"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ABX36727.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="159" mass="16508" checksum="E7D878BE64BCAB3A" modified="2008-01-15" version="1">MPIQFKKNLVAFAVGRRVNMEEWNTFTRTKEGSGTLGFGVPVKPGTGAHTCVQITATTGENVLGITEASQVLPRPGDGYAQYDNVGICESGVIGVLLGANVTKGQAARWNTAANNWTGAAQSATVVTIPGAQFEEDGVSGAVGVVRYRRPVPSLSVSGA</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2021-06-02" version="58" xmlns="http://uniprot.org/uniprot">
    <accession>A9C0U2</accession>
    <name>A9C0U2_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">GCN5-related N-acetyltransferase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_5777</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX38405.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012207574.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_5777"/>
    <dbReference type="EnsemblBacteria" id="ABX38405">
        <property type="protein sequence ID" value="ABX38405"/>
        <property type="gene ID" value="Daci_5777"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_5777"/>
    <dbReference type="eggNOG" id="COG0454">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_120448_0_0_4"/>
    <dbReference type="OMA" id="LWEHAKT"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008080">
        <property type="term" value="F:N-acetyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016181">
        <property type="entry name" value="Acyl_CoA_acyltransferase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000182">
        <property type="entry name" value="GNAT_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13673">
        <property type="entry name" value="Acetyltransf_10"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55729">
        <property type="entry name" value="SSF55729"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51186">
        <property type="entry name" value="GNAT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="N-acetyltransferase" evidence="1">
        <location>
            <begin position="1"/>
            <end position="150"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS51186"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX38405.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="169" mass="18303" checksum="6F4ECE9EBD33EB63" modified="2008-01-15" version="1">MHIRPAHIEDAEEISALVSSVSHLFTLDSGSQGAQEFLKALGPQALQAYLQDPRYLFIVARQGDALAGMAALRDGRHLFHLFVGLPFQRQGLARRLWQALQPAIHPDAGSVTVNSTPFAVPAYERLGFRATSAPLEKNGVAFVPMQIALAAPVGQPQRSDSPADWIARA</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="37" xmlns="http://uniprot.org/uniprot">
    <accession>A9C131</accession>
    <name>A9C131_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_5866</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX38494.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012207663.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_5866"/>
    <dbReference type="PRIDE" id="A9C131"/>
    <dbReference type="EnsemblBacteria" id="ABX38494">
        <property type="protein sequence ID" value="ABX38494"/>
        <property type="gene ID" value="Daci_5866"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_5866"/>
    <dbReference type="eggNOG" id="ENOG502ZVQI">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_2205753_0_0_4"/>
    <dbReference type="OMA" id="QVGKAPH"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="104"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="46"/>
            <end position="60"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="89"/>
            <end position="104"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX38494.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="104" mass="11213" checksum="CE932454EF092DFD" modified="2008-01-15" version="1">MKDKTTPAAQPSAQKQPKPSGDGRTKLPGQVGKAPHAPGESGEPEQGLRLPHERDQSIDATSDAPDPVMRQAHDDIASGQVDTDMRQTPGLDAEQRKKMVRKQP</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="72" xmlns="http://uniprot.org/uniprot">
    <accession>A9C1A2</accession>
    <name>A9C1A2_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="8">Pili assembly chaperone</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="8" type="ordered locus">Daci_5937</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="9" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Periplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the periplasmic pilus chaperone family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX38565.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012207734.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_5937"/>
    <dbReference type="PRIDE" id="A9C1A2"/>
    <dbReference type="EnsemblBacteria" id="ABX38565">
        <property type="protein sequence ID" value="ABX38565"/>
        <property type="gene ID" value="Daci_5937"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_5937"/>
    <dbReference type="eggNOG" id="COG3121">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_070768_0_2_4"/>
    <dbReference type="OMA" id="MKYPFSS"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030288">
        <property type="term" value="C:outer membrane-bounded periplasmic space"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0071555">
        <property type="term" value="P:cell wall organization"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0061077">
        <property type="term" value="P:chaperone-mediated protein folding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.40.10">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013783">
        <property type="entry name" value="Ig-like_fold"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008962">
        <property type="entry name" value="PapD-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036316">
        <property type="entry name" value="Pili_assmbl_chap_C_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001829">
        <property type="entry name" value="Pili_assmbl_chaperone_bac"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016148">
        <property type="entry name" value="Pili_assmbl_chaperone_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016147">
        <property type="entry name" value="Pili_assmbl_chaperone_N"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02753">
        <property type="entry name" value="PapD_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00345">
        <property type="entry name" value="PapD_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00969">
        <property type="entry name" value="CHAPERONPILI"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF49354">
        <property type="entry name" value="SSF49354"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF49584">
        <property type="entry name" value="SSF49584"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-0143">Chaperone</keyword>
    <keyword evidence="3" id="KW-0574">Periplasm</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="5" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="5">
        <location>
            <begin position="1"/>
            <end position="29"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5002732759" evidence="5">
        <location>
            <begin position="30"/>
            <end position="260"/>
        </location>
    </feature>
    <feature type="domain" description="PapD_N" evidence="6">
        <location>
            <begin position="31"/>
            <end position="153"/>
        </location>
    </feature>
    <feature type="domain" description="PapD_C" evidence="7">
        <location>
            <begin position="181"/>
            <end position="249"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004418"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00007399"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022764"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023186"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="Pfam" id="PF00345"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="Pfam" id="PF02753"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="ABX38565.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="260" mass="28271" checksum="66A8B3B749259DF8" modified="2008-01-15" version="1">MPGKNRGPCRLPYFLAIASLLLCSLPAHASLVLYGTRVIFSGDETEATLKISNEGKLPSLVQSWLDTGDGDMAPEGIDVPFVIAPSLTRLEASDQQMLRIIHSGQPLLQDRESLFWINVLDVPPKTENAKGSQGSLALAFRTRIKLIYRPKGLPGEPKDAPEQLQWSASTTRDGQAVLQARNPTAYVANLGHIAVEAAGQSFKMNVGHVLPGETAKFAFQKPAENEQLPKELPADAVVVYTSLNDWGGAEGHRVELGRRR</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="62" xmlns="http://uniprot.org/uniprot">
    <accession>A9C1E9</accession>
    <name>A9C1E9_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Alpha/beta hydrolase fold</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ordered locus">Daci_5984</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="5" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX38612.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_5984"/>
    <dbReference type="ESTHER" id="delas-a9c1e9">
        <property type="family name" value="6_AlphaBeta_hydrolase"/>
    </dbReference>
    <dbReference type="PRIDE" id="A9C1E9"/>
    <dbReference type="EnsemblBacteria" id="ABX38612">
        <property type="protein sequence ID" value="ABX38612"/>
        <property type="gene ID" value="Daci_5984"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_5984"/>
    <dbReference type="eggNOG" id="COG2021">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_020336_50_4_4"/>
    <dbReference type="OMA" id="DWIDMFT"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016787">
        <property type="term" value="F:hydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.1820">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029058">
        <property type="entry name" value="AB_hydrolase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000073">
        <property type="entry name" value="AB_hydrolase_1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013595">
        <property type="entry name" value="Pept_S33_TAP-like_C"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00561">
        <property type="entry name" value="Abhydrolase_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08386">
        <property type="entry name" value="Abhydrolase_4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00111">
        <property type="entry name" value="ABHYDROLASE"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53474">
        <property type="entry name" value="SSF53474"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1 4" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="AB hydrolase-1" evidence="2">
        <location>
            <begin position="58"/>
            <end position="164"/>
        </location>
    </feature>
    <feature type="domain" description="Abhydrolase_4" evidence="3">
        <location>
            <begin position="237"/>
            <end position="298"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF00561"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF08386"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="ABX38612.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="300" mass="32878" checksum="B43873967D6E1E20" modified="2008-01-15" version="1">MALTPAGLSMEHRRHGARERRAAVSGRFVTTFAGDPDMPIASVNGQNLYYEDTGGRGPALVFSHGLLMDHTMFAPQVQALQGRFRCISWDERGHGQTADPEQCAPFDYYDSADDLAALLEHLGVERAVLVGMSQGGYLSLRCALIHPEIVRALVLIDTQAMLEDPEQMPHHEALLRAWMEHGLSDDMATTVERTILGQGWSGAAAWRAKWKKATPINLGQSFLALAQRDDISPRLPDIHVPALVIHGTDDTAIAPNRARAMAKALPRAQWVEVPGAGHAANLTHPQPVNLAIERFLEQLD</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="72" xmlns="http://uniprot.org/uniprot">
    <accession>A9C1L6</accession>
    <name>A9C1L6_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="8">KpsF/GutQ family protein</fullName>
            <ecNumber evidence="8">5.3.1.13</ecNumber>
        </submittedName>
    </protein>
    <gene>
        <name evidence="8" type="ordered locus">Daci_6051</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="9" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1 2">Belongs to the SIS family. GutQ/KpsF subfamily.</text>
    </comment>
    <dbReference type="EC" id="5.3.1.13" evidence="8"/>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX38679.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012207848.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_6051"/>
    <dbReference type="PRIDE" id="A9C1L6"/>
    <dbReference type="EnsemblBacteria" id="ABX38679">
        <property type="protein sequence ID" value="ABX38679"/>
        <property type="gene ID" value="Daci_6051"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_6051"/>
    <dbReference type="eggNOG" id="COG0517">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="eggNOG" id="COG0794">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_040681_13_1_4"/>
    <dbReference type="OMA" id="LMACLMR"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0019146">
        <property type="term" value="F:arabinose-5-phosphate isomerase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0097367">
        <property type="term" value="F:carbohydrate derivative binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:1901135">
        <property type="term" value="P:carbohydrate derivative metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005975">
        <property type="term" value="P:carbohydrate metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd05014">
        <property type="entry name" value="SIS_Kpsf"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.10.580.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000644">
        <property type="entry name" value="CBS_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR046342">
        <property type="entry name" value="CBS_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004800">
        <property type="entry name" value="KdsD/KpsF-type"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001347">
        <property type="entry name" value="SIS_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR046348">
        <property type="entry name" value="SIS_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035474">
        <property type="entry name" value="SIS_Kpsf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00571">
        <property type="entry name" value="CBS"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01380">
        <property type="entry name" value="SIS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF004692">
        <property type="entry name" value="KdsD_KpsF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00116">
        <property type="entry name" value="CBS"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53697">
        <property type="entry name" value="SSF53697"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00393">
        <property type="entry name" value="kpsF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51371">
        <property type="entry name" value="CBS"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51464">
        <property type="entry name" value="SIS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-0129">CBS domain</keyword>
    <keyword evidence="8" id="KW-0413">Isomerase</keyword>
    <keyword evidence="3" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0862">Zinc</keyword>
    <feature type="domain" description="SIS" evidence="7">
        <location>
            <begin position="45"/>
            <end position="188"/>
        </location>
    </feature>
    <feature type="domain" description="CBS" evidence="6">
        <location>
            <begin position="214"/>
            <end position="272"/>
        </location>
    </feature>
    <feature type="domain" description="CBS" evidence="6">
        <location>
            <begin position="281"/>
            <end position="333"/>
        </location>
    </feature>
    <feature type="binding site" evidence="3">
        <location>
            <position position="86"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </ligand>
    </feature>
    <feature type="site" description="Catalytically relevant" evidence="4">
        <location>
            <position position="63"/>
        </location>
    </feature>
    <feature type="site" description="Catalytically relevant" evidence="4">
        <location>
            <position position="115"/>
        </location>
    </feature>
    <feature type="site" description="Catalytically relevant" evidence="4">
        <location>
            <position position="156"/>
        </location>
    </feature>
    <feature type="site" description="Catalytically relevant" evidence="4">
        <location>
            <position position="197"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00008165"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="PIRNR" id="PIRNR004692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="PIRSR" id="PIRSR004692-2"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="PIRSR" id="PIRSR004692-3"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00703"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="PROSITE" id="PS51371"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="PROSITE" id="PS51464"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="ABX38679.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="333" mass="34835" checksum="9D7277E0227D87DE" modified="2008-01-15" version="1">MNSDAATLDALDTPRALRLARDTLGIEADALQAMSQRLDGVFGEVVQRILRLSGRVVVMGMGKSGHVGRKVAATLASTGTPAFFVHPAEASHGDLGMVTGIDLVLALSNSGEADELAALLPAIKRQGIALVAMTGGAQSTLARHADWVLNTRVEREACPLNLAPTASTTAQMAMGDALAVALLDARGFGAEDFARSHPGGALGRKLLTHVRDVMRSGDELPKVGADASFVELMREMSAKGLGCSAIVDAAGVLQGIFTDGDLRRRVEAGTDLRALQAGDVMHKGPRTIAEDALAVDAASMMEEHGITAVLVADAQRQLRGVVHIRDLMRAKVI</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="47" xmlns="http://uniprot.org/uniprot">
    <accession>A9C1P9</accession>
    <name>A9C1P9_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_2596</name>
        <name evidence="3" type="ordered locus">Daci_2630</name>
    </gene>
    <organism evidence="2 4">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 4" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
            <strain evidence="2">SPH-1</strain>
        </source>
    </reference>
    <reference evidence="4" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="2" key="3">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="2">SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX35234.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX35268.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012204513.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_2596"/>
    <dbReference type="PRIDE" id="A9C1P9"/>
    <dbReference type="EnsemblBacteria" id="ABX35234">
        <property type="protein sequence ID" value="ABX35234"/>
        <property type="gene ID" value="Daci_2596"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="ABX35268">
        <property type="protein sequence ID" value="ABX35268"/>
        <property type="gene ID" value="Daci_2630"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_2596"/>
    <dbReference type="KEGG" id="dac:Daci_2630"/>
    <dbReference type="HOGENOM" id="CLU_1080625_0_0_4"/>
    <dbReference type="OMA" id="WRSAGYI"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="147"/>
            <end position="169"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="225"/>
            <end position="264"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX35234.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ABX35268.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="277" mass="26214" checksum="0DAF3C4C6CC3640A" modified="2008-01-15" version="1">MSFDAVNYAELRRLADSVQQAAQKVDSGRNEAAGHKAEVLAAMSGKLKFTEFRSSGYFYPSAKLLANGGQVFILAVGGGQGGARGGYNGNSGGAGGAVRFEIGGVGGPTSVVIGAGGSGQTAAYLSQAANGGDTSFGNLLAMGGRQFKSPTGVGDPSPRGSAAGRSFGVSGYGGPGGAGGFGSSGTGNATQPGADGVIGGLAMGNSSTGDYGNVVPGDPGYSGGGAGGTGVAGSATRGGHAAPNSGGGGGGGGSSGIGQHADGGNGGSGFVRVWWYE</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="72" xmlns="http://uniprot.org/uniprot">
    <accession>A9C1X9</accession>
    <name>A9C1X9_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">Outer membrane lipoprotein Blc</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="5" type="ordered locus">Daci_2977</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="6" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="2">Involved in the storage or transport of lipids necessary for membrane maintenance under stressful conditions. Displays a binding preference for lysophospholipids.</text>
    </comment>
    <comment type="subunit">
        <text evidence="2">Homodimer.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="2">Cell outer membrane</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="1 2">Belongs to the calycin superfamily. Lipocalin family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX35615.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012204825.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="PRIDE" id="A9C1X9"/>
    <dbReference type="EnsemblBacteria" id="ABX35615">
        <property type="protein sequence ID" value="ABX35615"/>
        <property type="gene ID" value="Daci_2977"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_2977"/>
    <dbReference type="eggNOG" id="COG3040">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_068449_2_1_4"/>
    <dbReference type="OMA" id="YSCTTIV"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009279">
        <property type="term" value="C:cell outer membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008289">
        <property type="term" value="F:lipid binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.128.20">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012674">
        <property type="entry name" value="Calycin"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR022271">
        <property type="entry name" value="Lipocalin_ApoD"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002446">
        <property type="entry name" value="Lipocalin_bac"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR022272">
        <property type="entry name" value="Lipocalin_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000566">
        <property type="entry name" value="Lipocln_cytosolic_FA-bd_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08212">
        <property type="entry name" value="Lipocalin_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF036893">
        <property type="entry name" value="Lipocalin_ApoD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR01171">
        <property type="entry name" value="BCTLIPOCALIN"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50814">
        <property type="entry name" value="SSF50814"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00213">
        <property type="entry name" value="LIPOCALIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2" id="KW-0998">Cell outer membrane</keyword>
    <keyword evidence="2" id="KW-0446">Lipid-binding</keyword>
    <keyword evidence="2" id="KW-0449">Lipoprotein</keyword>
    <keyword evidence="2 3" id="KW-0472">Membrane</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="3" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="3">
        <location>
            <begin position="20"/>
            <end position="41"/>
        </location>
    </feature>
    <feature type="domain" description="Lipocln_cytosolic_FA-bd_dom" evidence="4">
        <location>
            <begin position="60"/>
            <end position="198"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00006889"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="PIRNR" id="PIRNR036893"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="Pfam" id="PF08212"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="ABX35615.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="208" mass="23116" checksum="C8EC2409B142B04A" modified="2008-01-15" version="1">MSPRYPNTESTTPSTSRPAWVLPTAGLAGLAVGAAAAALLWKGLRNPPIPPTVEPVRGWDIQRYMGRWYEVARIDHSFEKGLERTQAEYTQLPDGTVHVLNRGYDARHRRWKSSEGKARTVHGPDVAALKVSFFGPFYGGYNVVALDAEYRWAMVVGSDLRYFWILSRTPELADGVAARLLAQARLLGVPVDKVQWILQDGVNPTGSW</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="34" xmlns="http://uniprot.org/uniprot">
    <accession>A9C2B5</accession>
    <name>A9C2B5_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Daci_3421</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="2" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX36059.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012205259.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_3421"/>
    <dbReference type="PRIDE" id="A9C2B5"/>
    <dbReference type="EnsemblBacteria" id="ABX36059">
        <property type="protein sequence ID" value="ABX36059"/>
        <property type="gene ID" value="Daci_3421"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_3421"/>
    <dbReference type="HOGENOM" id="CLU_2192718_0_0_4"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ABX36059.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="108" mass="11842" checksum="7B637E88B7898AC0" modified="2008-01-15" version="1">MTPEQQERLEKLLRTHEGRLQDVAKKHGRSQVSDAALQVTRLRQRGAVVALVRELMTEQVRSLPAAPASAIKEALRSPGWLTHGQAWDATSAVEQVLIDHGVCGVAKT</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="60" xmlns="http://uniprot.org/uniprot">
    <accession>A9C2F3</accession>
    <name>A9C2F3_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Integrase family protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ordered locus">Daci_3461</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="5" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX36097.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012205297.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_3461"/>
    <dbReference type="PRIDE" id="A9C2F3"/>
    <dbReference type="EnsemblBacteria" id="ABX36097">
        <property type="protein sequence ID" value="ABX36097"/>
        <property type="gene ID" value="Daci_3461"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_3461"/>
    <dbReference type="eggNOG" id="COG0582">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_027562_3_0_4"/>
    <dbReference type="OMA" id="WRSLTMN"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015074">
        <property type="term" value="P:DNA integration"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006310">
        <property type="term" value="P:DNA recombination"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.443.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.160.390">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011010">
        <property type="entry name" value="DNA_brk_join_enz"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013762">
        <property type="entry name" value="Integrase-like_cat_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002104">
        <property type="entry name" value="Integrase_catalytic"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038488">
        <property type="entry name" value="Integrase_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025166">
        <property type="entry name" value="Integrase_DNA_bind_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13356">
        <property type="entry name" value="Arm-DNA-bind_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00589">
        <property type="entry name" value="Phage_integrase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56349">
        <property type="entry name" value="SSF56349"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51898">
        <property type="entry name" value="TYR_RECOMBINASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0233">DNA recombination</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Tyr recombinase" evidence="3">
        <location>
            <begin position="240"/>
            <end position="409"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="91"/>
            <end position="111"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023172"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="PROSITE" id="PS51898"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="ABX36097.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="435" mass="47714" checksum="82867AE9EEE229C6" modified="2008-01-15" version="1">MARPSKNQPVDLSTPINITPSVIERLVCPEGKDQAFLRDALVPGLRVRVSAHGAKSFVFERKVGQKTVRKTLGDVRVLTVDEARAAARRAHGTLDAGESLNTPAAPPEPTHDATVQEAWSAYLADRKSQWGERHYADHEKLARPGGKKATRGTRGRGETVPGILYPLMALPLTDLTPATIEAWAAEQAKTGPTQGRLGARMISAFINWCEDQPAYAGLAPRGAAVVKTKRVRETLGKARTKSDALLREQLAPWFRAVLTMNNPAMSAYLQVLLLTGARPGEVRTIRWADIDWAWAGLSIRDKVEGDRIIPLTPYVRSLIDGLSRRSEWVFTSADGSCLYSPNHAHDKACHVAGVPAVTLHGLRRSFKSLTEWLEMPAGVVAQIMGHKPSATAEKHYTVRPLDLLRMHHEKIEAWVLAQAGVPFVAPKIGQRLQVV</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="48" xmlns="http://uniprot.org/uniprot">
    <accession>A9C2T6</accession>
    <name>A9C2T6_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_4109</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX36740.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_4109"/>
    <dbReference type="PRIDE" id="A9C2T6"/>
    <dbReference type="EnsemblBacteria" id="ABX36740">
        <property type="protein sequence ID" value="ABX36740"/>
        <property type="gene ID" value="Daci_4109"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_4109"/>
    <dbReference type="eggNOG" id="ENOG50332F3">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_106206_0_0_4"/>
    <dbReference type="OMA" id="REARGHM"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="72"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="145"/>
            <end position="173"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="38"/>
            <end position="68"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="145"/>
            <end position="169"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX36740.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="227" mass="24682" checksum="1A838B1CD23AEA91" modified="2008-01-15" version="1">MRHAHRTRHGHADREPPGLRGKPPHGLRAHRHRDARGVRCRREPAAARPLRAPQRREARGHMPGARMTPDKQKQKLAGQTAIAQKVFQAVPIAEAWTVAQISQSLHRTTGARLDRHTLQGCLRALADSDLIRSTEHGSLHQRVAVSAAQSTPPKTKESTVTQPAKPATPQQAAPASAIDVLGCLAQKMRALADEVDAAALALEEEQSRTTGEAAKLKQLKALLKEIA</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="40" xmlns="http://uniprot.org/uniprot">
    <accession>A9C2T8</accession>
    <name>A9C2T8_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_4111</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX36742.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_4111"/>
    <dbReference type="PRIDE" id="A9C2T8"/>
    <dbReference type="EnsemblBacteria" id="ABX36742">
        <property type="protein sequence ID" value="ABX36742"/>
        <property type="gene ID" value="Daci_4111"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_4111"/>
    <dbReference type="eggNOG" id="ENOG50332SK">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_923276_0_0_4"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="97"/>
            <end position="168"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="97"/>
            <end position="125"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="138"/>
            <end position="158"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX36742.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="301" mass="33744" checksum="8CB00E78143E5DC4" modified="2008-01-15" version="1">MANGIDWFRWHHGSVTDPKFQLVARRAGCRLPDVIAAWAFVLEQASASSDRGSYGDLDFESIDLLMGFDDGVTQKIVAAMEARGLLVDGMVAAWTKRQVKRERTDDSSTERVKAFREKQRQETPEAGDETPGNATQRQETPREEKRREEEKEEAKASLSTSSPEKPMDELFADEGKAKTAGVPSCPIDALLDAYEELLPTLPAPRRSLFKAGKRAAPMRQRWAWVLTATHERGPRAGQRLATNAAEGVEWFRKYFEHVAKSDFLTGRDGKWTGCNIGFLMQLEKFSKVLEGAYHQAEVSHA</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="76" xmlns="http://uniprot.org/uniprot">
    <accession>A9C3C1</accession>
    <name>A9C3C1_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Acetyl-CoA acetyltransferase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ordered locus">Daci_4603</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="6" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1 2">Belongs to the thiolase-like superfamily. Thiolase family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX37232.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012206402.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_4603"/>
    <dbReference type="PRIDE" id="A9C3C1"/>
    <dbReference type="EnsemblBacteria" id="ABX37232">
        <property type="protein sequence ID" value="ABX37232"/>
        <property type="gene ID" value="Daci_4603"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_4603"/>
    <dbReference type="eggNOG" id="COG0183">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_031026_2_1_4"/>
    <dbReference type="OMA" id="GHPWGAS"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016747">
        <property type="term" value="F:acyltransferase activity, transferring groups other than amino-acyl groups"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd00751">
        <property type="entry name" value="thiolase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.47.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002155">
        <property type="entry name" value="Thiolase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016039">
        <property type="entry name" value="Thiolase-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020617">
        <property type="entry name" value="Thiolase_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020613">
        <property type="entry name" value="Thiolase_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020616">
        <property type="entry name" value="Thiolase_N"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02803">
        <property type="entry name" value="Thiolase_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00108">
        <property type="entry name" value="Thiolase_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF000429">
        <property type="entry name" value="Ac-CoA_Ac_transf"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53901">
        <property type="entry name" value="SSF53901"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01930">
        <property type="entry name" value="AcCoA-C-Actrans"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00737">
        <property type="entry name" value="THIOLASE_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2" id="KW-0012">Acyltransferase</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 5" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Thiolase_N" evidence="3">
        <location>
            <begin position="8"/>
            <end position="256"/>
        </location>
    </feature>
    <feature type="domain" description="Thiolase_C" evidence="4">
        <location>
            <begin position="266"/>
            <end position="397"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00010982"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="RuleBase" id="RU003557"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF00108"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="Pfam" id="PF02803"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="ABX37232.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="399" mass="40477" checksum="28DE4EA039FA3DBB" modified="2008-01-15" version="1">MNPQDAPVILAWARSPVAPVGGALRELAAHELGAPVLQALLARAGLPARAVDAVVLGNALGAGGNPARMLALAAGLPERCAAHSVDTQCCSGLDSVALAAGLLMSGQASIVVAGGAEAWSRAPIRQTRPRHADELPVTYDRPAFAPDPARDPDLLQSAADHALAHGITRAVQEAHAIHSHALALAHRDRLAQEIVPMAGLDHDAYPRALNPARVARMPVVAEAAGAVDAHARQRHALSTPAISPKADGAALVLLATPQACARLGLQPRARWIASASLGHAPETPLVAAALAAQQVLERAAAALQRPCLTAPELQAVELHDAFAVQALAFAETLGLPLQQLNTGGGGLARGHPIGASGAVALVRMLSDLHRTPAAHRPALGLAAIAGAGGIGAACLVQAL</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="31" xmlns="http://uniprot.org/uniprot">
    <accession>A9C3M1</accession>
    <name>A9C3M1_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_4703</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX37332.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012206502.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_4703"/>
    <dbReference type="PRIDE" id="A9C3M1"/>
    <dbReference type="EnsemblBacteria" id="ABX37332">
        <property type="protein sequence ID" value="ABX37332"/>
        <property type="gene ID" value="Daci_4703"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_4703"/>
    <dbReference type="HOGENOM" id="CLU_2080946_0_0_4"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="20"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="77"/>
            <end position="117"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX37332.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="117" mass="12441" checksum="C47FB60189BB77B8" modified="2008-01-15" version="1">MTTTTTDTQPAPPETSGMGQLQSLLLQTIKDLRSGATTPQIARAITDIGQTLVASSRAEIEFARITKASRVGFLDSPALQGAMPKPTADGAGHTTPLPPGQHWQGLVHRTSDKEPRR</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-01-19" version="58" xmlns="http://uniprot.org/uniprot">
    <accession>A9BLS3</accession>
    <name>A9BLS3_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Isochorismatase hydrolase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_4231</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX36862.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_4231"/>
    <dbReference type="EnsemblBacteria" id="ABX36862">
        <property type="protein sequence ID" value="ABX36862"/>
        <property type="gene ID" value="Daci_4231"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_4231"/>
    <dbReference type="eggNOG" id="COG1335">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_068979_5_5_4"/>
    <dbReference type="OMA" id="KTRPSCF"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016787">
        <property type="term" value="F:hydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.850">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000868">
        <property type="entry name" value="Isochorismatase-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036380">
        <property type="entry name" value="Isochorismatase-like_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00857">
        <property type="entry name" value="Isochorismatase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52499">
        <property type="entry name" value="SSF52499"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Isochorismatase" evidence="1">
        <location>
            <begin position="24"/>
            <end position="165"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF00857"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX36862.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="194" mass="20231" checksum="95B76B1CAED19C89" modified="2008-01-15" version="1">MQISPSAPSAASSSTAAPDGPRRALLVIDMQQGLFNGSDAPFDKDRVLANTGQLIARAREAGAPIFAARHTGPAGSPIAPGSPLTQLLPQLGIEAQRDRVFDKTRPSCFEGTGLATWLAEAGIAELVIAGMKTEFCVDTTCRAAAGLGFRPVLVADAHTTTDSPLLQAELIIGHHNRTLGGAFAQLVQTADCRF</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="63" xmlns="http://uniprot.org/uniprot">
    <accession>A9BLV8</accession>
    <name>A9BLV8_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="3">3-oxoacid CoA-transferase, A subunit</fullName>
            <ecNumber evidence="3">2.8.3.5</ecNumber>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Daci_4266</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="4" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the 3-oxoacid CoA-transferase subunit A family.</text>
    </comment>
    <dbReference type="EC" id="2.8.3.5" evidence="3"/>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX36897.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012206069.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_4266"/>
    <dbReference type="PRIDE" id="A9BLV8"/>
    <dbReference type="EnsemblBacteria" id="ABX36897">
        <property type="protein sequence ID" value="ABX36897"/>
        <property type="gene ID" value="Daci_4266"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_4266"/>
    <dbReference type="eggNOG" id="COG1788">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_019942_2_0_4"/>
    <dbReference type="OMA" id="FVKAWKG"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008260">
        <property type="term" value="F:3-oxoacid CoA-transferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012792">
        <property type="entry name" value="3-oxoacid_CoA-transf_A"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004165">
        <property type="entry name" value="CoA_trans_fam_I"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004163">
        <property type="entry name" value="CoA_transf_BS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037171">
        <property type="entry name" value="NagB/RpiA_transferase-like"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR13707">
        <property type="entry name" value="PTHR13707"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01144">
        <property type="entry name" value="CoA_trans"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00882">
        <property type="entry name" value="CoA_trans"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF100950">
        <property type="entry name" value="SSF100950"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR02429">
        <property type="entry name" value="pcaI_scoA_fam"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01273">
        <property type="entry name" value="COA_TRANSF_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 3" id="KW-0808">Transferase</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00005612"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ABX36897.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="235" mass="25305" checksum="29C7FCA30EEEB69A" modified="2008-01-15" version="1">MKKLYPSAEQALQGVVADGQLLAVGGFGLCGIPEALIDALRDSGAKGLTVISNNAGVDGFGLGKLLETRQIKKMISSYVGENKEFERQYLAGELELEFTPQGTLAEKLRAGGAGIPAFFTKTGVGTMVAEGKELREFDGKTYVMERSLVPDVSLVKAHRADKSGNLQFRLTARNFNPAAATAGKVCIVEVEEVVEVGEIAPDDIHLPGIYVHRIVHNPNPEKRIEKRTITEKQGA</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="75" xmlns="http://uniprot.org/uniprot">
    <accession>A9BM80</accession>
    <name>A9BM80_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="8">Amino acid permease-associated region</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="8" type="ordered locus">Daci_4796</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="9" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX37425.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012206595.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_4796"/>
    <dbReference type="PRIDE" id="A9BM80"/>
    <dbReference type="EnsemblBacteria" id="ABX37425">
        <property type="protein sequence ID" value="ABX37425"/>
        <property type="gene ID" value="Daci_4796"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_4796"/>
    <dbReference type="eggNOG" id="COG1113">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_007946_9_3_4"/>
    <dbReference type="OMA" id="VIMYLTP"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006865">
        <property type="term" value="P:amino acid transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0055085">
        <property type="term" value="P:transmembrane transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004841">
        <property type="entry name" value="AA-permease/SLC12A_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004840">
        <property type="entry name" value="Amoino_acid_permease_CS"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00324">
        <property type="entry name" value="AA_permease"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00218">
        <property type="entry name" value="AMINO_ACID_PERMEASE_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="5 6" id="KW-0472">Membrane</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 6" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="4 6" id="KW-1133">Transmembrane helix</keyword>
    <keyword evidence="2" id="KW-0813">Transport</keyword>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="21"/>
            <end position="40"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="46"/>
            <end position="65"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="85"/>
            <end position="107"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="119"/>
            <end position="141"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="153"/>
            <end position="177"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="197"/>
            <end position="218"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="239"/>
            <end position="260"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="280"/>
            <end position="307"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="339"/>
            <end position="362"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="368"/>
            <end position="389"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="401"/>
            <end position="429"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="435"/>
            <end position="455"/>
        </location>
    </feature>
    <feature type="domain" description="AA_permease" evidence="7">
        <location>
            <begin position="18"/>
            <end position="459"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022448"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="Pfam" id="PF00324"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="ABX37425.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="474" mass="51587" checksum="70FCD3872FC0EF2C" modified="2008-01-15" version="1">MHSSSSQGHLERRLKNRHIQLIALGGTIGTGLFLGSAGIIELAGPSVLLGYATGGLIIFFIMRFLGEMLVEEPNAGSFSYFANRYLGRFAGFLAGWNCVALYVLVGMLELTAAGKFIQFWWPGIPTWVTAAVFFVLINGVNFINVKAYGEFEFWFALIKIAAVLAMIAAGVYLLFSADRPEQTVRNLWTHGGFFPNGFSGLVMAFAFIMFAFGGVEMLGFAAAETDQPRTVIPKAVNQLIYRVLVFYIGSMAVLMSLMPWTDLLGQLKAGGDTYSSSPFVLVFSGLGENTAAHLLNFVILTATLSVYNSMVYSNSRLLYGMASEGNAPRSLMQVNRRGVPVRAIVYPAIFTALAIVLNYVAPAGVLELLMSLIVAALVITWTIIIVAHWRFRRAHVARKTVLGFPAPAAPLTNAICLAAMALVVGVMLLTPSVRSSALAIPIWVLVVYGAYRLVFRQRPTPVLESVLEPAHIPR</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="53" xmlns="http://uniprot.org/uniprot">
    <accession>A9BM87</accession>
    <name>A9BM87_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Daci_4803</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="2" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX37432.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012206602.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_4803"/>
    <dbReference type="PRIDE" id="A9BM87"/>
    <dbReference type="EnsemblBacteria" id="ABX37432">
        <property type="protein sequence ID" value="ABX37432"/>
        <property type="gene ID" value="Daci_4803"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_4803"/>
    <dbReference type="eggNOG" id="COG5499">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_125852_2_0_4"/>
    <dbReference type="OMA" id="IGKSNRV"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006355">
        <property type="term" value="P:regulation of transcription, DNA-templated"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.260.40">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR039060">
        <property type="entry name" value="Antitox_HigA"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010982">
        <property type="entry name" value="Lambda_DNA-bd_dom_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR40455">
        <property type="entry name" value="PTHR40455"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ABX37432.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="128" mass="14439" checksum="7EF6CEEA59A6BA06" modified="2008-01-15" version="1">MEIRPIRTEQDYRTALTEISQLIDKDPASGTPDGDRLDILGTLVEAYEARHYPIAPPDPIDALRLLMESRGMTVKDLVPYIGQTNRIYEILNRSRPLTLNMLYRLHDLGIPAESLLSRPRTAASESHG</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="59" xmlns="http://uniprot.org/uniprot">
    <accession>A9BMA7</accession>
    <name>A9BMA7_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Extracellular ligand-binding receptor</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Daci_4823</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="4" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX37452.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_4823"/>
    <dbReference type="PRIDE" id="A9BMA7"/>
    <dbReference type="EnsemblBacteria" id="ABX37452">
        <property type="protein sequence ID" value="ABX37452"/>
        <property type="gene ID" value="Daci_4823"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_4823"/>
    <dbReference type="eggNOG" id="COG0683">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_027128_7_0_4"/>
    <dbReference type="OMA" id="RTEAAYF"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR028081">
        <property type="entry name" value="Leu-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR028082">
        <property type="entry name" value="Peripla_BP_I"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13458">
        <property type="entry name" value="Peripla_BP_6"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53822">
        <property type="entry name" value="SSF53822"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-0675">Receptor</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Peripla_BP_6" evidence="2">
        <location>
            <begin position="77"/>
            <end position="429"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="37"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF13458"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ABX37452.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="437" mass="47451" checksum="81CF1783555259A6" modified="2008-01-15" version="1">MHSSESTMGARRAGSYHGPATTRKAGTAPASQETTMRNPFARGPRALIACLALVLPAVTPVPAQAQKKYDTGASDTEIRIGNFVPYSGPVSAYGTIGKTHAAYFAKINAEGGINGRKITYLSADDAYNPAQSVEQTRKLVERDGVLLMFGALGTSHNQAVHRYMNQRKVPQLFVSTGATRWGDPKNFPWTMGWQPTYQLEGRTFAQHILATRPQAKVAVLMQNDDFGKDYLKGVLDGFGEQAKQRIVVQQTYEVGDPTVDSQMVALKGSGADTFINISTPKFAAQSIRKAADIGWKPAHYLVSVSLSISSVLKPAGLDNARGVMTASYLREPSDPSNQGTPELAGYLAFMKQFYPAGDPNDSLNVIGYSQAQTLVQVLRQAGDELTRANIMKQAASLKMDLPMLYPGISLQTGGEDFFPIKKMQLVRFDGSRYAPVQ</sequence>
</entry>
<entry dataset="Swiss-Prot" created="2009-03-24" modified="2022-08-03" version="77" xmlns="http://uniprot.org/uniprot">
    <accession>A9BML8</accession>
    <name>RNH2_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Ribonuclease HII</fullName>
            <shortName evidence="1">RNase HII</shortName>
            <ecNumber evidence="1">3.1.26.4</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="1" type="primary">rnhB</name>
        <name type="ordered locus">Daci_4934</name>
    </gene>
    <organism>
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference key="1">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain>DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="1">Endonuclease that specifically degrades the RNA of RNA-DNA hybrids.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>Endonucleolytic cleavage to 5'-phosphomonoester.</text>
            <dbReference type="EC" id="3.1.26.4"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>Mn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29035"/>
        </cofactor>
        <cofactor evidence="1">
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </cofactor>
        <text evidence="1">Manganese or magnesium. Binds 1 divalent metal ion per monomer in the absence of substrate. May bind a second metal ion after substrate binding.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="1">Belongs to the RNase HII family.</text>
    </comment>
    <dbReference type="EC" id="3.1.26.4" evidence="1"/>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX37563.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012206733.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A9BML8"/>
    <dbReference type="SMR" id="A9BML8"/>
    <dbReference type="STRING" id="398578.Daci_4934"/>
    <dbReference type="PRIDE" id="A9BML8"/>
    <dbReference type="EnsemblBacteria" id="ABX37563">
        <property type="protein sequence ID" value="ABX37563"/>
        <property type="gene ID" value="Daci_4934"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_4934"/>
    <dbReference type="eggNOG" id="COG0164">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_036532_3_2_4"/>
    <dbReference type="OMA" id="YPTKLHL"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030145">
        <property type="term" value="F:manganese ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003723">
        <property type="term" value="F:RNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004523">
        <property type="term" value="F:RNA-DNA hybrid ribonuclease activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006401">
        <property type="term" value="P:RNA catabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd07182">
        <property type="entry name" value="RNase_HII_bacteria_HII_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.420.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00052_B">
        <property type="entry name" value="RNase_HII_B"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR022898">
        <property type="entry name" value="RNase_HII"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001352">
        <property type="entry name" value="RNase_HII/HIII"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR024567">
        <property type="entry name" value="RNase_HII/HIII_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012337">
        <property type="entry name" value="RNaseH-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036397">
        <property type="entry name" value="RNaseH_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10954">
        <property type="entry name" value="PTHR10954"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10954:SF18">
        <property type="entry name" value="PTHR10954:SF18"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01351">
        <property type="entry name" value="RNase_HII"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53098">
        <property type="entry name" value="SSF53098"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51975">
        <property type="entry name" value="RNASE_H_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword id="KW-0963">Cytoplasm</keyword>
    <keyword id="KW-0255">Endonuclease</keyword>
    <keyword id="KW-0378">Hydrolase</keyword>
    <keyword id="KW-0464">Manganese</keyword>
    <keyword id="KW-0479">Metal-binding</keyword>
    <keyword id="KW-0540">Nuclease</keyword>
    <keyword id="KW-1185">Reference proteome</keyword>
    <feature type="chain" id="PRO_1000091619" description="Ribonuclease HII">
        <location>
            <begin position="1"/>
            <end position="235"/>
        </location>
    </feature>
    <feature type="domain" description="RNase H type-2" evidence="2">
        <location>
            <begin position="23"/>
            <end position="212"/>
        </location>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <position position="29"/>
        </location>
        <ligand>
            <name>a divalent metal cation</name>
            <dbReference type="ChEBI" id="CHEBI:60240"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <position position="30"/>
        </location>
        <ligand>
            <name>a divalent metal cation</name>
            <dbReference type="ChEBI" id="CHEBI:60240"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <position position="121"/>
        </location>
        <ligand>
            <name>a divalent metal cation</name>
            <dbReference type="ChEBI" id="CHEBI:60240"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000255" key="1">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00052"/>
        </source>
    </evidence>
    <evidence type="ECO:0000255" key="2">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU01319"/>
        </source>
    </evidence>
    <sequence length="235" mass="25038" checksum="923422724041390F" modified="2008-01-15" version="1">MRSRKSLPPLPPEQACLPWHPPGLVAGVDEAGRGPLAGPVVAAAVILDDLNPIEGLNDSKKLTAARREALYDEIRAKALCCSIAEASVEEIDRLNILQATLLAMRRAVLGLRLKPVLVLVDGNQLPVLDVQAEAIVKGDSLVQAISAASILAKVTRDRWCERLHEQYPEYGFDGHKGYGTAAHLAALRLHGACEEHRRTFAPVAHVVSIARMAEPLAAARVAAAAQGAQALLLSA</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="73" xmlns="http://uniprot.org/uniprot">
    <accession>A9BMW9</accession>
    <name>A9BMW9_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="3">FAD-dependent pyridine nucleotide-disulphide oxidoreductase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Daci_5035</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="4" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the NADH dehydrogenase family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX37664.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012206834.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_5035"/>
    <dbReference type="PRIDE" id="A9BMW9"/>
    <dbReference type="EnsemblBacteria" id="ABX37664">
        <property type="protein sequence ID" value="ABX37664"/>
        <property type="gene ID" value="Daci_5035"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_5035"/>
    <dbReference type="eggNOG" id="COG1252">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_021377_7_0_4"/>
    <dbReference type="OMA" id="KWILVEA"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003954">
        <property type="term" value="F:NADH dehydrogenase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006116">
        <property type="term" value="P:NADH oxidation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036188">
        <property type="entry name" value="FAD/NAD-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023753">
        <property type="entry name" value="FAD/NAD-binding_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045024">
        <property type="entry name" value="NDH-2"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43706">
        <property type="entry name" value="PTHR43706"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07992">
        <property type="entry name" value="Pyr_redox_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51905">
        <property type="entry name" value="SSF51905"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Pyr_redox_2" evidence="2">
        <location>
            <begin position="17"/>
            <end position="342"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00005272"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF07992"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ABX37664.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="440" mass="46741" checksum="EB9FD7DA82E5846E" modified="2008-01-15" version="1">MGKEQEAGSATGSGGARIVVVGGGVAGLEIATALGKGRADAIGSVTLVDSDSAHVWKPMLHTIAAGTRDLAQQQTTYLAQASDASFAYQPGEMCGLDREAREVLLAPIEAPDGREIVPGRRIAYDRLVIAVGSGANDFGTPGVDEHCFMIDSRRKADAFNSEIRLRMVRCMTSGEQLRVAIVGGGATGVELAAELVQLAESARAYGALGEAARFGIVLIEAGPRLLPGFPEEISEATRLRLQALGVSVIVNGRVQSASEEGFVLASGEFVPAGLRVWAAGVKAPAFLAQLGLETTQGNQLKVNGQLQTSDPHVYAVGDCASFTLPGASVPLPPTAQVAHQQARYLVETLPRLLKEPGFRPEGFAYRDFGALVSLAHYDAYGSLGKFGLFNGGVIRGRMAMLSHIMLYRSHQARIYGFWRGGLLWLIDLMNSRLRPSIRLD</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="81" xmlns="http://uniprot.org/uniprot">
    <accession>A9BMX6</accession>
    <name>A9BMX6_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Two component transcriptional regulator, winged helix family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ordered locus">Daci_5042</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="5" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX37671.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012206841.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_5042"/>
    <dbReference type="PRIDE" id="A9BMX6"/>
    <dbReference type="EnsemblBacteria" id="ABX37671">
        <property type="protein sequence ID" value="ABX37671"/>
        <property type="gene ID" value="Daci_5042"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_5042"/>
    <dbReference type="eggNOG" id="COG0745">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_1202961_0_0_4"/>
    <dbReference type="OMA" id="CIENIPM"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000160">
        <property type="term" value="P:phosphorelay signal transduction system"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006355">
        <property type="term" value="P:regulation of transcription, DNA-templated"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd00383">
        <property type="entry name" value="trans_reg_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011006">
        <property type="entry name" value="CheY-like_superfamily"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001867">
        <property type="entry name" value="OmpR/PhoB-type_DNA-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016032">
        <property type="entry name" value="Sig_transdc_resp-reg_C-effctor"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001789">
        <property type="entry name" value="Sig_transdc_resp-reg_receiver"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR039420">
        <property type="entry name" value="WalR-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR48111">
        <property type="entry name" value="PTHR48111"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00072">
        <property type="entry name" value="Response_reg"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00486">
        <property type="entry name" value="Trans_reg_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00448">
        <property type="entry name" value="REC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00862">
        <property type="entry name" value="Trans_reg_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46894">
        <property type="entry name" value="SSF46894"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52172">
        <property type="entry name" value="SSF52172"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50110">
        <property type="entry name" value="RESPONSE_REGULATORY"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="2" id="KW-0597">Phosphoprotein</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Response regulatory" evidence="3">
        <location>
            <begin position="3"/>
            <end position="121"/>
        </location>
    </feature>
    <feature type="modified residue" description="4-aspartylphosphate" evidence="2">
        <location>
            <position position="54"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00169"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="PROSITE" id="PS50110"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="ABX37671.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="241" mass="26768" checksum="F3CF29929BAC7F28" modified="2008-01-15" version="1">MTRIAVIEDDLPTSNQLAGWIRSARSGIVIDQWFTRDEAEAALAREHYDAVVLDIELGRERHAGVALINAINKLGQGTPVLVVSAMPAAIYRSIMKALDAWDYLQKTTFEEADFIETFLDILRTTQRAAPVAAQAAAAPAGDALVLDPLWQRTPTWRGERINLPLTAQRILATLHQRSGEVVSYDELFEVVKSGRNRDNVRKHVSTIREALREVDPGFEGIENVPMRGFRWVGQAGAAVRT</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="42" xmlns="http://uniprot.org/uniprot">
    <accession>A9BN44</accession>
    <name>A9BN44_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Daci_5110</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="2" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX37739.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012206909.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="PRIDE" id="A9BN44"/>
    <dbReference type="EnsemblBacteria" id="ABX37739">
        <property type="protein sequence ID" value="ABX37739"/>
        <property type="gene ID" value="Daci_5110"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_5110"/>
    <dbReference type="eggNOG" id="ENOG503482Z">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_1746501_0_0_4"/>
    <dbReference type="OMA" id="PADWQCL"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ABX37739.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="142" mass="16096" checksum="28DC9E42C2361FE5" modified="2008-01-15" version="1">MAHALRQAWRHHGASPADWQCLAAEPGQSLPEHGAVYLLGLDWRAPVTEHEGVSNGPAAQLQHWRDQLQSQSRGYVVLYGNTARQWQQLAESLRLKAPQMDWSWLPASPVQRSARLRPYGCEQCSDPDCERRLFDALRSGRD</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="48" xmlns="http://uniprot.org/uniprot">
    <accession>A9BND6</accession>
    <name>A9BND6_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_5202</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX37831.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="PRIDE" id="A9BND6"/>
    <dbReference type="EnsemblBacteria" id="ABX37831">
        <property type="protein sequence ID" value="ABX37831"/>
        <property type="gene ID" value="Daci_5202"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_5202"/>
    <dbReference type="eggNOG" id="ENOG5032WYX">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_1341365_0_0_4"/>
    <dbReference type="OMA" id="ICERMFA"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="89"/>
            <end position="115"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX37831.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="199" mass="21471" checksum="06AF7C61709C15CD" modified="2008-01-15" version="1">MASSRHGHSCNVQSGLVGLPAPTMLLQKTAKALEELQPGRRSLPLRERSVLLMADGRTEEQLQQVLGAQTGELIEQLIASGHLQRLAGQAAASSPQAPSMAPAAAKESSPPGPAATLNLAGTRMYLFDMCERMFANRHEDKAQVLRHLLREARDLEALQAAALQLLQTVQEHAGDERADALRERLRHLLPQEAATAQGA</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="87" xmlns="http://uniprot.org/uniprot">
    <accession>A9BNJ7</accession>
    <name>A9BNJ7_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="4 7">Signal peptidase I</fullName>
            <ecNumber evidence="3 7">3.4.21.89</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="10" type="ordered locus">Daci_5263</name>
    </gene>
    <organism evidence="10 11">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="10 11" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="11">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="11" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="11">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="1 7">
            <text>Cleavage of hydrophobic, N-terminal signal or leader sequences from secreted and periplasmic proteins.</text>
            <dbReference type="EC" id="3.4.21.89"/>
        </reaction>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="8">Membrane</location>
            <topology evidence="8">Single-pass type II membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2 8">Belongs to the peptidase S26 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="8">Lacks conserved residue(s) required for the propagation of feature annotation.</text>
    </comment>
    <dbReference type="EC" id="3.4.21.89" evidence="3 7"/>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX37892.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012207062.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_5263"/>
    <dbReference type="MEROPS" id="S26.001"/>
    <dbReference type="PRIDE" id="A9BNJ7"/>
    <dbReference type="EnsemblBacteria" id="ABX37892">
        <property type="protein sequence ID" value="ABX37892"/>
        <property type="gene ID" value="Daci_5263"/>
    </dbReference>
    <dbReference type="GeneID" id="60689607"/>
    <dbReference type="KEGG" id="dac:Daci_5263"/>
    <dbReference type="eggNOG" id="COG0681">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_028723_1_1_4"/>
    <dbReference type="OMA" id="SDSRFWG"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004252">
        <property type="term" value="F:serine-type endopeptidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006465">
        <property type="term" value="P:signal peptide processing"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd06530">
        <property type="entry name" value="S26_SPase_I"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036286">
        <property type="entry name" value="LexA/Signal_pep-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000223">
        <property type="entry name" value="Pept_S26A_signal_pept_1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019758">
        <property type="entry name" value="Pept_S26A_signal_pept_1_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019757">
        <property type="entry name" value="Pept_S26A_signal_pept_1_Lys-AS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019756">
        <property type="entry name" value="Pept_S26A_signal_pept_1_Ser-AS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019533">
        <property type="entry name" value="Peptidase_S26"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43390">
        <property type="entry name" value="PTHR43390"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF10502">
        <property type="entry name" value="Peptidase_S26"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00727">
        <property type="entry name" value="LEADERPTASE"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51306">
        <property type="entry name" value="SSF51306"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR02227">
        <property type="entry name" value="sigpep_I_bact"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00501">
        <property type="entry name" value="SPASE_I_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00760">
        <property type="entry name" value="SPASE_I_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00761">
        <property type="entry name" value="SPASE_I_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="7 10" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="7" id="KW-0472">Membrane</keyword>
    <keyword evidence="5 7" id="KW-0645">Protease</keyword>
    <keyword evidence="11" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="7" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="7" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="7"/>
            <end position="25"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="31"/>
            <end position="48"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="101"/>
            <end position="122"/>
        </location>
    </feature>
    <feature type="domain" description="Peptidase_S26" evidence="9">
        <location>
            <begin position="102"/>
            <end position="313"/>
        </location>
    </feature>
    <feature type="active site" evidence="6">
        <location>
            <position position="132"/>
        </location>
    </feature>
    <feature type="active site" evidence="6">
        <location>
            <position position="187"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00000677"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00009370"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00013208"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00019232"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022670"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="PIRSR" id="PIRSR600223-1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="RuleBase" id="RU003993"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="RuleBase" id="RU362042"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="9">
        <source>
            <dbReference type="Pfam" id="PF10502"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="EMBL" id="ABX37892.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="325" mass="37089" checksum="C0EEEDC1303FC887" modified="2008-01-15" version="1">MQAMQWITAVVLAAFVGYIGAWYTGFIEGNFALLLFLATVVTGLYWVAERLYFLPRRRRAAVAIEEAAVARRAELDRMGIAKTDIEVSEEAKGRILMQPWWLDWTAGLFPVIAIVFVLRSFLFEPFKIPSGSMIPTLLVGDLILVNKFTYGVRLPVINTKITQGTPLQRGDVVVFRYPPQPSLDYIKRVVGLPGDEIAYLNKRLTINGKEVPVNALPDFFDKDAMRYFKQYEESLGDKPHRMIVNQDVPAFIQGASGFEFRENCRYSVEGITCKVPEGQYFMMGDNRDNSLDSRYWGFVPDKNIVGRAFFVWMNFGDFKRIGSFH</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="66" xmlns="http://uniprot.org/uniprot">
    <accession>A9BNL4</accession>
    <name>A9BNL4_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="1">HAD-superfamily hydrolase, subfamily IA, variant 3</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Daci_5280</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="2" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX37909.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012207078.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_5280"/>
    <dbReference type="PRIDE" id="A9BNL4"/>
    <dbReference type="EnsemblBacteria" id="ABX37909">
        <property type="protein sequence ID" value="ABX37909"/>
        <property type="gene ID" value="Daci_5280"/>
    </dbReference>
    <dbReference type="GeneID" id="60689624"/>
    <dbReference type="KEGG" id="dac:Daci_5280"/>
    <dbReference type="eggNOG" id="COG0546">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_045011_19_2_4"/>
    <dbReference type="OMA" id="LLIFDWD"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016787">
        <property type="term" value="F:hydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.150.240">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.1000">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036412">
        <property type="entry name" value="HAD-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006439">
        <property type="entry name" value="HAD-SF_hydro_IA"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041492">
        <property type="entry name" value="HAD_2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023214">
        <property type="entry name" value="HAD_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023198">
        <property type="entry name" value="PGP-like_dom2"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13419">
        <property type="entry name" value="HAD_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56784">
        <property type="entry name" value="SSF56784"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01549">
        <property type="entry name" value="HAD-SF-IA-v1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01509">
        <property type="entry name" value="HAD-SF-IA-v3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ABX37909.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="228" mass="24428" checksum="6CDF4ABE2DD9E14E" modified="2008-01-15" version="1">MTNPGSSEMHRARRFDLIAFDWDGTLSDSTAVIVKCIQAAVADVGGTPPSDEAASYVIGMALMPALARAAPDVPPEKYPELGNRYRHHFIKHQDDISLFAGVLPMLAALRERGHLLAVATGKSRRGLNDALQDPQLRGMFDSSRTADETAGKPNPLMLQELMAEFGADPSRVLMIGDTTHDLELARNAGCASVGVGYGAHPTDGFGVLKPLHVAQSVADLHQWLLAHG</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="59" xmlns="http://uniprot.org/uniprot">
    <accession>A9BNQ8</accession>
    <name>A9BNQ8_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Carboxymethylenebutenolidase</fullName>
            <ecNumber evidence="3">3.1.1.45</ecNumber>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Daci_5324</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="4" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EC" id="3.1.1.45" evidence="3"/>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX37953.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012207122.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_5324"/>
    <dbReference type="PRIDE" id="A9BNQ8"/>
    <dbReference type="EnsemblBacteria" id="ABX37953">
        <property type="protein sequence ID" value="ABX37953"/>
        <property type="gene ID" value="Daci_5324"/>
    </dbReference>
    <dbReference type="GeneID" id="60689669"/>
    <dbReference type="KEGG" id="dac:Daci_5324"/>
    <dbReference type="eggNOG" id="COG0412">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_054590_7_0_4"/>
    <dbReference type="OMA" id="HIKAYVV"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008806">
        <property type="term" value="F:carboxymethylenebutenolidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.1820">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029058">
        <property type="entry name" value="AB_hydrolase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002925">
        <property type="entry name" value="Dienelactn_hydro"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01738">
        <property type="entry name" value="DLH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53474">
        <property type="entry name" value="SSF53474"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="DLH" evidence="2">
        <location>
            <begin position="71"/>
            <end position="293"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="24"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF01738"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ABX37953.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="298" mass="32047" checksum="5DF8C2DE57BBD172" modified="2008-01-15" version="1">MRDDQQQDLKALVPGRSSEEGPTRRLALQTALGLGYAAAATPLMAQTAISTPADGLTAGEVHFTVNGFKVPAYRAAPAGKKNVPVVLVISEIFGVHEYIADTCRRLARAGYLAIAPDLYARQGDPKTYTDIAKLMSELVSKVPDEQVMADLDGAVQWAGTQGGDTARVAITGFCWGGRITWLYAAHGPVKAGVAWYGRLEGAKTALQPRHPLELVSSLKAPVLGLYGGQDTGIPLESVERMREALKQGSAAAKASEFVIYPEAPHAFHADYRPSYREQAARDGWQKMLAWFNKNGVAP</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="46" xmlns="http://uniprot.org/uniprot">
    <accession>A9BNR2</accession>
    <name>A9BNR2_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Daci_5328</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="4" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX37957.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012207126.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_5328"/>
    <dbReference type="PRIDE" id="A9BNR2"/>
    <dbReference type="EnsemblBacteria" id="ABX37957">
        <property type="protein sequence ID" value="ABX37957"/>
        <property type="gene ID" value="Daci_5328"/>
    </dbReference>
    <dbReference type="GeneID" id="60689673"/>
    <dbReference type="KEGG" id="dac:Daci_5328"/>
    <dbReference type="eggNOG" id="COG5473">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_072075_2_0_4"/>
    <dbReference type="OMA" id="TYRGCFN"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="2" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="27"/>
            <end position="46"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="52"/>
            <end position="73"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="94"/>
            <end position="118"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="145"/>
            <end position="164"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="202"/>
            <end position="222"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="229"/>
            <end position="249"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="258"/>
            <end position="277"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ABX37957.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="277" mass="29287" checksum="A11A2C59DAC03CD9" modified="2008-01-15" version="1">MKLLIVPARTGLQWVQQGIRTFRQQPLALAALFFLSMAAMSLVTVLPLIGPVIALGLLPATSLAMMVAAAEASHGRAPTPALLLVAFRTGRQRLNSMLTLGAMYAAGFLLIMGLSMLVDDGQFANVYLGGEPLTREIAESPDFQAAMWLSMGLYLPLSLLFWHAPGLVHWHNVPPVKAVFFSLVACVRNIGALVVFGLSWMGVFIVAGIVMALISAVLAQVLGSIANGLMIGTAMLLAAMFFTSIVFTFRDCFAAPDESDGSDAIGTEPPAPPGLSG</sequence>
</entry>
<entry dataset="Swiss-Prot" created="2009-03-24" modified="2022-08-03" version="86" xmlns="http://uniprot.org/uniprot">
    <accession>A9BP37</accession>
    <name>SYDND_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Aspartate--tRNA(Asp/Asn) ligase</fullName>
            <ecNumber evidence="1">6.1.1.23</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="1">Aspartyl-tRNA synthetase</fullName>
            <shortName evidence="1">AspRS</shortName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="1">Non-discriminating aspartyl-tRNA synthetase</fullName>
            <shortName evidence="1">ND-AspRS</shortName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="1" type="primary">aspS</name>
        <name type="ordered locus">Daci_5453</name>
    </gene>
    <organism>
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference key="1">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain>DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="1">Aspartyl-tRNA synthetase with relaxed tRNA specificity since it is able to aspartylate not only its cognate tRNA(Asp) but also tRNA(Asn). Reaction proceeds in two steps: L-aspartate is first activated by ATP to form Asp-AMP and then transferred to the acceptor end of tRNA(Asp/Asn).</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>ATP + L-aspartate + tRNA(Asx) = AMP + diphosphate + L-aspartyl-tRNA(Asx)</text>
            <dbReference type="Rhea" id="RHEA:18349"/>
            <dbReference type="Rhea" id="RHEA-COMP:9710"/>
            <dbReference type="Rhea" id="RHEA-COMP:9711"/>
            <dbReference type="ChEBI" id="CHEBI:29991"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:33019"/>
            <dbReference type="ChEBI" id="CHEBI:78442"/>
            <dbReference type="ChEBI" id="CHEBI:78516"/>
            <dbReference type="ChEBI" id="CHEBI:456215"/>
            <dbReference type="EC" id="6.1.1.23"/>
        </reaction>
    </comment>
    <comment type="subunit">
        <text evidence="1">Homodimer.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="1">Belongs to the class-II aminoacyl-tRNA synthetase family. Type 1 subfamily.</text>
    </comment>
    <dbReference type="EC" id="6.1.1.23" evidence="1"/>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX38082.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012207251.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A9BP37"/>
    <dbReference type="SMR" id="A9BP37"/>
    <dbReference type="STRING" id="398578.Daci_5453"/>
    <dbReference type="PRIDE" id="A9BP37"/>
    <dbReference type="EnsemblBacteria" id="ABX38082">
        <property type="protein sequence ID" value="ABX38082"/>
        <property type="gene ID" value="Daci_5453"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_5453"/>
    <dbReference type="eggNOG" id="COG0173">
        <property type="taxonomic scope" value="Bacteria"/>
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    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004815">
        <property type="term" value="F:aspartate-tRNA ligase activity"/>
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        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0050560">
        <property type="term" value="F:aspartate-tRNA(Asn) ligase activity"/>
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        <property type="project" value="UniProtKB-EC"/>
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        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
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        <property type="term" value="F:nucleic acid binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006422">
        <property type="term" value="P:aspartyl-tRNA aminoacylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.50.140">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.1360.30">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.930.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00044">
        <property type="entry name" value="Asp_tRNA_synth_type1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004364">
        <property type="entry name" value="Aa-tRNA-synt_II"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006195">
        <property type="entry name" value="aa-tRNA-synth_II"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045864">
        <property type="entry name" value="aa-tRNA-synth_II/BPL/LPL"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004524">
        <property type="entry name" value="Asp-tRNA-ligase_1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002312">
        <property type="entry name" value="Asp/Asn-tRNA-synth_IIb"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004115">
        <property type="entry name" value="GAD-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029351">
        <property type="entry name" value="GAD_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012340">
        <property type="entry name" value="NA-bd_OB-fold"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004365">
        <property type="entry name" value="NA-bd_OB_tRNA"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR22594:SF5">
        <property type="entry name" value="PTHR22594:SF5"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02938">
        <property type="entry name" value="GAD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00152">
        <property type="entry name" value="tRNA-synt_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01336">
        <property type="entry name" value="tRNA_anti-codon"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR01042">
        <property type="entry name" value="TRNASYNTHASP"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50249">
        <property type="entry name" value="SSF50249"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55261">
        <property type="entry name" value="SSF55261"/>
        <property type="match status" value="1"/>
    </dbReference>
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        <property type="entry name" value="SSF55681"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00459">
        <property type="entry name" value="aspS_bact"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50862">
        <property type="entry name" value="AA_TRNA_LIGASE_II"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword id="KW-0030">Aminoacyl-tRNA synthetase</keyword>
    <keyword id="KW-0067">ATP-binding</keyword>
    <keyword id="KW-0963">Cytoplasm</keyword>
    <keyword id="KW-0436">Ligase</keyword>
    <keyword id="KW-0547">Nucleotide-binding</keyword>
    <keyword id="KW-0648">Protein biosynthesis</keyword>
    <keyword id="KW-1185">Reference proteome</keyword>
    <feature type="chain" id="PRO_1000090987" description="Aspartate--tRNA(Asp/Asn) ligase">
        <location>
            <begin position="1"/>
            <end position="600"/>
        </location>
    </feature>
    <feature type="region of interest" description="Aspartate" evidence="1">
        <location>
            <begin position="198"/>
            <end position="201"/>
        </location>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <position position="174"/>
        </location>
        <ligand>
            <name>L-aspartate</name>
            <dbReference type="ChEBI" id="CHEBI:29991"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <begin position="220"/>
            <end position="222"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <position position="220"/>
        </location>
        <ligand>
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            <dbReference type="ChEBI" id="CHEBI:29991"/>
        </ligand>
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            <position position="229"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <position position="456"/>
        </location>
        <ligand>
            <name>L-aspartate</name>
            <dbReference type="ChEBI" id="CHEBI:29991"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <position position="490"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <position position="497"/>
        </location>
        <ligand>
            <name>L-aspartate</name>
            <dbReference type="ChEBI" id="CHEBI:29991"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <begin position="542"/>
            <end position="545"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <feature type="site" description="Important for tRNA non-discrimination" evidence="1">
        <location>
            <position position="32"/>
        </location>
    </feature>
    <feature type="site" description="Important for tRNA non-discrimination" evidence="1">
        <location>
            <position position="83"/>
        </location>
    </feature>
    <evidence type="ECO:0000255" key="1">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00044"/>
        </source>
    </evidence>
    <sequence length="600" mass="67879" checksum="318CE0051D996C92" modified="2008-01-15" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2021-09-29" version="41" xmlns="http://uniprot.org/uniprot">
    <accession>A9BP82</accession>
    <name>A9BP82_DELAS</name>
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        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Daci_5498</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
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            <taxon>Comamonadaceae</taxon>
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        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
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                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
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            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="2" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX38127.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
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        <property type="gene ID" value="Daci_5498"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_5498"/>
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        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_164746_0_0_4"/>
    <dbReference type="OMA" id="SRGWEVN"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ABX38127.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="112" mass="12316" checksum="1B517B970DABFE0F" modified="2008-01-15" version="1">MPTLPVQPFKPMTFTRRHHAVTALHAVENSPTLARLAQLTRDSSNRLTAILPLVPPLLRASLQAGPIEGSTWCLLVRNNAAAAKIRQLLPAMAAHLRTKGWDVTEIRLKVQA</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="62" xmlns="http://uniprot.org/uniprot">
    <accession>A9BP93</accession>
    <name>A9BP93_DELAS</name>
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        <submittedName>
            <fullName evidence="1">L-carnitine dehydratase/bile acid-inducible protein F</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Daci_0010</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
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        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
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                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="2" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX32657.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_0010"/>
    <dbReference type="PRIDE" id="A9BP93"/>
    <dbReference type="EnsemblBacteria" id="ABX32657">
        <property type="protein sequence ID" value="ABX32657"/>
        <property type="gene ID" value="Daci_0010"/>
    </dbReference>
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    <dbReference type="eggNOG" id="COG1804">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_033975_1_1_4"/>
    <dbReference type="OMA" id="WCARHDL"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003824">
        <property type="term" value="F:catalytic activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.1540.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.10540">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003673">
        <property type="entry name" value="CoA-Trfase_fam_III"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR044855">
        <property type="entry name" value="CoA-Trfase_III_dom3_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023606">
        <property type="entry name" value="CoA-Trfase_III_dom_1_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02515">
        <property type="entry name" value="CoA_transf_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF89796">
        <property type="entry name" value="SSF89796"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ABX32657.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="387" mass="41795" checksum="C15140A73244BDB0" modified="2008-01-15" version="1">MQTRPLDGLTVLAMEHAVAGPFASRQLADLGARVIKLERLPDGDFARGYDDKVHGESSFFVWANRGKQSLAADIKTAEGQHIVGKILENADILIQNLAPGAMQRMGMDFDSLHEKYPRLIVCDISGYGEGGPLSDKKAYDLLIQAVAGLISVTGTPDQPARVGISIADIAAAMYAYSGILSALLQRARTGRGLRVEVSMLEALAEWMSYPLNFAHYGGTAPARSGLTHPSIAPYGQYTAGDGQSLIFGLQNDREWHSFCIHVLQQPALAQDARFATNLQRVAHRAELDAVIASVLAHLSREQAMQRLDAGGIANAPLNDMHAVWNHPQLQARQRWREVATPAGNIQALLPPATLSDAEAAMGAVPALGEHTQALWDEFGGQARGWLE</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="79" xmlns="http://uniprot.org/uniprot">
    <accession>A9BPB6</accession>
    <name>A9BPB6_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="8">Transcriptional regulator, TetR family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="8" type="ordered locus">Daci_0033</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="9" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX32680.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012201973.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_0033"/>
    <dbReference type="PRIDE" id="A9BPB6"/>
    <dbReference type="EnsemblBacteria" id="ABX32680">
        <property type="protein sequence ID" value="ABX32680"/>
        <property type="gene ID" value="Daci_0033"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_0033"/>
    <dbReference type="eggNOG" id="COG1309">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_069356_27_2_4"/>
    <dbReference type="OMA" id="SWIGRWY"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023772">
        <property type="entry name" value="DNA-bd_HTH_TetR-type_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009057">
        <property type="entry name" value="Homeobox-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001647">
        <property type="entry name" value="HTH_TetR"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041490">
        <property type="entry name" value="KstR2_TetR_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036271">
        <property type="entry name" value="Tet_transcr_reg_TetR-rel_C_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF17932">
        <property type="entry name" value="TetR_C_24"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00440">
        <property type="entry name" value="TetR_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00455">
        <property type="entry name" value="HTHTETR"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46689">
        <property type="entry name" value="SSF46689"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48498">
        <property type="entry name" value="SSF48498"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01081">
        <property type="entry name" value="HTH_TETR_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50977">
        <property type="entry name" value="HTH_TETR_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3 5" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0678">Repressor</keyword>
    <keyword evidence="4" id="KW-0804">Transcription</keyword>
    <keyword evidence="2" id="KW-0805">Transcription regulation</keyword>
    <feature type="domain" description="HTH tetR-type" evidence="7">
        <location>
            <begin position="44"/>
            <end position="104"/>
        </location>
    </feature>
    <feature type="DNA-binding region" description="H-T-H motif" evidence="5">
        <location>
            <begin position="67"/>
            <end position="86"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="6">
        <location>
            <begin position="1"/>
            <end position="47"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="6">
        <location>
            <begin position="236"/>
            <end position="256"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="6">
        <location>
            <begin position="1"/>
            <end position="15"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022491"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023015"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023163"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00335"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="PROSITE" id="PS50977"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="ABX32680.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="256" mass="27775" checksum="B96FF4DB1AFA5492" modified="2008-01-15" version="1">MKQSSPETKTRPSPSPGTRAGKGRAAPSVDSPWSGTPDREQQREAKRQAVLQAAAQLFNERGFSATSLDDIAARLGVSKPTLYYYVKNKDEILLQCVNQGLAMTLEGIEASRRAGGQAVDQLRACMQVYARIVTMDFGMCLIRVGDEQVPPDSRRELRRQKAAIDQAFRRLVAAGVQEGSLAPCDPKMTAFVIAGALSWIGRWYQPGGQYSAEEVAQQCIDTLMGGVLRRADVLDTPKLSKPPKVGKPAKRAKAGG</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="74" xmlns="http://uniprot.org/uniprot">
    <accession>A9BPD2</accession>
    <name>A9BPD2_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="3">FAD linked oxidase domain protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Daci_0153</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="4" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX32799.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012202092.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_0153"/>
    <dbReference type="PRIDE" id="A9BPD2"/>
    <dbReference type="EnsemblBacteria" id="ABX32799">
        <property type="protein sequence ID" value="ABX32799"/>
        <property type="gene ID" value="Daci_0153"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_0153"/>
    <dbReference type="eggNOG" id="COG0277">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_017779_4_1_4"/>
    <dbReference type="OMA" id="YLHYSKD"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0071949">
        <property type="term" value="F:FAD binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016491">
        <property type="term" value="F:oxidoreductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.45.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.43.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.465.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016166">
        <property type="entry name" value="FAD-bd_PCMH"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036318">
        <property type="entry name" value="FAD-bd_PCMH-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016167">
        <property type="entry name" value="FAD-bd_PCMH_sub1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016169">
        <property type="entry name" value="FAD-bd_PCMH_sub2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016164">
        <property type="entry name" value="FAD-linked_Oxase-like_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004113">
        <property type="entry name" value="FAD-linked_oxidase_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006094">
        <property type="entry name" value="Oxid_FAD_bind_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016171">
        <property type="entry name" value="Vanillyl_alc_oxidase_C-sub2"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02913">
        <property type="entry name" value="FAD-oxidase_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01565">
        <property type="entry name" value="FAD_binding_4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55103">
        <property type="entry name" value="SSF55103"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56176">
        <property type="entry name" value="SSF56176"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51387">
        <property type="entry name" value="FAD_PCMH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0274">FAD</keyword>
    <keyword evidence="1" id="KW-0285">Flavoprotein</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="FAD-binding PCMH-type" evidence="2">
        <location>
            <begin position="37"/>
            <end position="216"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022827"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS51387"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ABX32799.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="462" mass="48834" checksum="5C19D71B4F72C5AD" modified="2008-01-15" version="1">MPHALFLDELISTLGAEVAQRGDDVPARYHTDWSGTPPQRPLALVRPRSTDEVSALMRLCTAHRVPVVPQGGLTGLAGAAVPVAGAVAVSMERMNAIEDVNARTALMTVQAGATLQAVQEAAVAAGMVFGVDLGARGSCQIGGNVATNAGGNGVLQHGMMREQVLGLEVVLADGTVLPMLRPMLKNNTGYDLKQFFIGSEGTLGIVTRVLLRLRPAPQARATALVAVPDFDAALSVLARMQSRFGNGVAAFELMWDSFIQASIRWQKLQPPFGQAHALLALIDVDGKDEATLRADVEEALGEAMEAGEVADAVIAQSVAQARQLWKLREAPAELNTNMHPPVNFDVSLPQADIGRFADACRAAFDARWPGHHSLFFGHVGDGNLHVSVDGATANGDCDGVEAALYHLVGEFGGSVSAEHGIGLHKKPYLGASRTPAELAVMRAIKQALDPLHLFNPGKVFDL</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="63" xmlns="http://uniprot.org/uniprot">
    <accession>A9BPE2</accession>
    <name>A9BPE2_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Efflux transporter, RND family, MFP subunit</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ordered locus">Daci_0163</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="5" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX32809.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012202102.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_0163"/>
    <dbReference type="PRIDE" id="A9BPE2"/>
    <dbReference type="EnsemblBacteria" id="ABX32809">
        <property type="protein sequence ID" value="ABX32809"/>
        <property type="gene ID" value="Daci_0163"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_0163"/>
    <dbReference type="eggNOG" id="COG0845">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_018816_2_1_4"/>
    <dbReference type="OMA" id="DQRPYRA"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016020">
        <property type="term" value="C:membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0022857">
        <property type="term" value="F:transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR032317">
        <property type="entry name" value="HlyD_D23"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006143">
        <property type="entry name" value="RND_pump_MFP"/>
    </dbReference>
    <dbReference type="Pfam" id="PF16576">
        <property type="entry name" value="HlyD_D23"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01730">
        <property type="entry name" value="RND_mfp"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="2">
        <location>
            <begin position="1"/>
            <end position="31"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5002735869" evidence="2">
        <location>
            <begin position="32"/>
            <end position="404"/>
        </location>
    </feature>
    <feature type="domain" description="HlyD_D23" evidence="3">
        <location>
            <begin position="68"/>
            <end position="298"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00009477"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF16576"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="ABX32809.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="404" mass="42954" checksum="B4D23BF013A9C397" modified="2008-01-15" version="1">MPVLPPPPLRRALFGGALAALALLAGCRPQAVGDAHASDGPPPAPEVLVSEVVPASVRVWDEFNGRIDAVESVQLRPRVSGYIERIAFSEGQEVRKGQLLFVIDQRPYRAALASAEAELERTRAGAALARTQDQRARQLVAEHAVSREEADTRAGALAQSAAQVRAAEAALAAARLNLDFTEVRAPVSGRAGRALLTVGNLAQADQSVLTTVVSQDPVYVYFDADEHSFLRQQQAAKDTKGRPGVQRPVRVGLAGDEGFPHAGSLDFTDNQLNAGTGTVRMRARLPNPDRLLTPGLFARVQLQDAQGAGGERQTLLIDDKAVLTDQDRKYVYVVGEGNKAERRDLELGRMVDGRRVVDKGLAAGDSLVVGGLQRIYYPGMPISPKPAPGDGQAAVAKAPAVAAQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="53" xmlns="http://uniprot.org/uniprot">
    <accession>A9BPI6</accession>
    <name>A9BPI6_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Thioesterase superfamily protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_0207</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX32853.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_0207"/>
    <dbReference type="PRIDE" id="A9BPI6"/>
    <dbReference type="EnsemblBacteria" id="ABX32853">
        <property type="protein sequence ID" value="ABX32853"/>
        <property type="gene ID" value="Daci_0207"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_0207"/>
    <dbReference type="eggNOG" id="COG2050">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_089876_3_2_4"/>
    <dbReference type="OMA" id="LPWDPSN"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029069">
        <property type="entry name" value="HotDog_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003736">
        <property type="entry name" value="PAAI_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006683">
        <property type="entry name" value="Thioestr_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03061">
        <property type="entry name" value="4HBT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54637">
        <property type="entry name" value="SSF54637"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00369">
        <property type="entry name" value="unchar_dom_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="4HBT" evidence="1">
        <location>
            <begin position="69"/>
            <end position="144"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF03061"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX32853.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="160" mass="16790" checksum="6F84CE2C92B22C98" modified="2008-01-15" version="1">MSHADAMIARMNTPIKDHPANPFEGEAPGILFGLPMPMARAMKLSGERIGEDRAQIRMGFQPDQANSRGDVHGGAIASLLDCALASACRSHDPTAFGVATIDLTLHYVSAGSGDLIATAHCERRGRSISFARGEVRSEDGTLVALATGTFKLMARGGAQA</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2021-06-02" version="36" xmlns="http://uniprot.org/uniprot">
    <accession>A9BPJ3</accession>
    <name>A9BPJ3_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Daci_0214</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="4" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX32860.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_0214"/>
    <dbReference type="EnsemblBacteria" id="ABX32860">
        <property type="protein sequence ID" value="ABX32860"/>
        <property type="gene ID" value="Daci_0214"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_0214"/>
    <dbReference type="HOGENOM" id="CLU_1903264_0_0_4"/>
    <dbReference type="OMA" id="NAPHEQP"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="2">
        <location>
            <begin position="1"/>
            <end position="32"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5002732973" evidence="2">
        <location>
            <begin position="33"/>
            <end position="137"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="32"/>
            <end position="62"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="106"/>
            <end position="137"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ABX32860.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="137" mass="13938" checksum="0A2FE024F540BC18" modified="2008-01-15" version="1">MTAMTQTSHTAVARALPLLLAGSLSLLATACAAPPPPPATAPAPASASAAPAAPDAGQPLTLQGRLVLRGNAPHEQPVLQTASGETWQLKGLSAEQVTQWQRQNVEVRGQPGPRPAAGAAPSMVPPQLQVQSIRAQP</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="76" xmlns="http://uniprot.org/uniprot">
    <accession>A9BPQ7</accession>
    <name>A9BPQ7_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="5 11">Delta-aminolevulinic acid dehydratase</fullName>
            <ecNumber evidence="4 11">4.2.1.24</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="13" type="ordered locus">Daci_0380</name>
    </gene>
    <organism evidence="13 14">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="13 14" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="14">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="14" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="14">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="1 11">
            <text>2 5-aminolevulinate = H(+) + 2 H2O + porphobilinogen</text>
            <dbReference type="Rhea" id="RHEA:24064"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:58126"/>
            <dbReference type="ChEBI" id="CHEBI:356416"/>
            <dbReference type="EC" id="4.2.1.24"/>
        </reaction>
    </comment>
    <comment type="pathway">
        <text evidence="2">Porphyrin-containing compound metabolism; protoporphyrin-IX biosynthesis; coproporphyrinogen-III from 5-aminolevulinate: step 1/4.</text>
    </comment>
    <comment type="subunit">
        <text evidence="11">Homooctamer.</text>
    </comment>
    <comment type="similarity">
        <text evidence="3 12">Belongs to the ALAD family.</text>
    </comment>
    <dbReference type="EC" id="4.2.1.24" evidence="4 11"/>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX33026.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_0380"/>
    <dbReference type="PRIDE" id="A9BPQ7"/>
    <dbReference type="EnsemblBacteria" id="ABX33026">
        <property type="protein sequence ID" value="ABX33026"/>
        <property type="gene ID" value="Daci_0380"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_0380"/>
    <dbReference type="eggNOG" id="COG0113">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_035731_0_0_4"/>
    <dbReference type="OMA" id="YQMDYAN"/>
    <dbReference type="UniPathway" id="UPA00251">
        <property type="reaction ID" value="UER00318"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004655">
        <property type="term" value="F:porphobilinogen synthase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006782">
        <property type="term" value="P:protoporphyrinogen IX biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniPathway"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.20.20.70">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001731">
        <property type="entry name" value="ALAD"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR030656">
        <property type="entry name" value="ALAD_AS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013785">
        <property type="entry name" value="Aldolase_TIM"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11458">
        <property type="entry name" value="PTHR11458"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00490">
        <property type="entry name" value="ALAD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF001415">
        <property type="entry name" value="Porphbilin_synth"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00144">
        <property type="entry name" value="DALDHYDRTASE"/>
    </dbReference>
    <dbReference type="SMART" id="SM01004">
        <property type="entry name" value="ALAD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00169">
        <property type="entry name" value="D_ALA_DEHYDRATASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="6" id="KW-0350">Heme biosynthesis</keyword>
    <keyword evidence="7 11 13" id="KW-0456">Lyase</keyword>
    <keyword evidence="10" id="KW-0460">Magnesium</keyword>
    <keyword evidence="10" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="8 11" id="KW-0627">Porphyrin biosynthesis</keyword>
    <keyword evidence="14" id="KW-1185">Reference proteome</keyword>
    <feature type="active site" description="Schiff-base intermediate with substrate" evidence="9">
        <location>
            <position position="224"/>
        </location>
    </feature>
    <feature type="active site" description="Schiff-base intermediate with substrate" evidence="9">
        <location>
            <position position="279"/>
        </location>
    </feature>
    <feature type="binding site" evidence="10">
        <location>
            <position position="264"/>
        </location>
        <ligand>
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001227"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00004694"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00008055"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00012053"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00020771"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023133"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023239"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00023244"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="PIRSR" id="PIRSR001415-1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="PIRSR" id="PIRSR001415-5"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="RuleBase" id="RU000515"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="12">
        <source>
            <dbReference type="RuleBase" id="RU004161"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="13">
        <source>
            <dbReference type="EMBL" id="ABX33026.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="14">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="355" mass="39002" checksum="3B3C669A87487488" modified="2008-01-15" version="1">MPASSPGLRGLRREWGTIFGMHLSSPTPFPHNRPRRLRRDAFTRNLVRENVLTAHDFIYPVFVHEGTNQREAVPSMPGVDRLSLDLLLPVAEQCVQLEIPFLALFPAIETSLKTPDGKEALNPDGLIPRVVRALKKEFPQLGVMTDVALDPYTSHGQDGILDESGYIINDETVQVLVGQALNHAEAGVDMVAPSDMMDGRIGAIREALEAHGHIHTRIMAYSAKYASAFYGPFRDAVGTRGALGKADKNVYQMDPANTDEALREVAQDLAEGADMVMVKPGMPYLDVVRRVKDEFGVPTFAYQVSGEYAMLKAAAANGWLDHDQVMMESLLAFKRAGADGILTYFAIDAARKLRG</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="55" xmlns="http://uniprot.org/uniprot">
    <accession>A9BPV0</accession>
    <name>A9BPV0_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="4">TPM_phosphatase domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="5" type="ordered locus">Daci_0423</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="6" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX33069.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012202360.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_0423"/>
    <dbReference type="PRIDE" id="A9BPV0"/>
    <dbReference type="EnsemblBacteria" id="ABX33069">
        <property type="protein sequence ID" value="ABX33069"/>
        <property type="gene ID" value="Daci_0423"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_0423"/>
    <dbReference type="eggNOG" id="COG3762">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_086382_1_0_4"/>
    <dbReference type="OMA" id="HTGQIRI"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007621">
        <property type="entry name" value="TPM_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04536">
        <property type="entry name" value="TPM_phosphatase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-0472">Membrane</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="2" id="KW-1133">Transmembrane helix</keyword>
    <feature type="domain" description="TPM_phosphatase" evidence="4">
        <location>
            <begin position="29"/>
            <end position="148"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="Pfam" id="PF04536"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="ABX33069.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="180" mass="20245" checksum="402E9347B8B1ACD4" modified="2008-01-15" version="1">MAAAITGFVQRLLRLLRHHWAEGQLRRALPPESLAELERLITMSEQRHTGQIRICVEPGLPPSYLWRDATPRERAITLFGKLRVWDTEHNNGALIYLLLADHAIEIVADRALARTLPAEQWQTLISDMGAAFQGGHYAMGMTAALERVSLLLETNFPRDPLQPVHDGSDNLPDAVVIQHH</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="70" xmlns="http://uniprot.org/uniprot">
    <accession>A9BPV3</accession>
    <name>A9BPV3_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Alpha/beta hydrolase fold</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Daci_0426</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="4" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the AB hydrolase superfamily. AB hydrolase 4 family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX33072.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012202363.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_0426"/>
    <dbReference type="ESTHER" id="delas-a9bpv3">
        <property type="family name" value="abh_upf0017"/>
    </dbReference>
    <dbReference type="PRIDE" id="A9BPV3"/>
    <dbReference type="EnsemblBacteria" id="ABX33072">
        <property type="protein sequence ID" value="ABX33072"/>
        <property type="gene ID" value="Daci_0426"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_0426"/>
    <dbReference type="eggNOG" id="COG0429">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_032487_0_0_4"/>
    <dbReference type="OMA" id="RNDPFVP"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016787">
        <property type="term" value="F:hydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.1820">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029058">
        <property type="entry name" value="AB_hydrolase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000073">
        <property type="entry name" value="AB_hydrolase_1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012020">
        <property type="entry name" value="ABHD4"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00561">
        <property type="entry name" value="Abhydrolase_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF005211">
        <property type="entry name" value="Ab_hydro_YheT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53474">
        <property type="entry name" value="SSF53474"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="AB hydrolase-1" evidence="2">
        <location>
            <begin position="64"/>
            <end position="304"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00010884"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF00561"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ABX33072.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="328" mass="35761" checksum="E1D863DB4AE46C3A" modified="2008-01-15" version="1">MHEFTAARWLPGGHAQTIWPALFARRWPVGQAAPAWRWERWDTPDGDFIDVAFGGAPTPPVDAPWLVLFHGLEGSANSHYAQAMAWVAAQRGWHMAVPHFRGCSGEVNRGPRAYHSGDVQEVDWILRRLRARSSRPLHVVGVSLGGNALARWAGLQADKAAEVVQALAAVSAPLDLAAGGMALGQGLNRWIYTRMFLRTLVPKARVKWAQFPGLFDRDAAVRARDLKEFDDAFTAPVHGFLDAHDYWRRAAAKPVLGSIAVPALLLNALDDPFVPACSLPGPGEVGPRVTLWQPPHGGHVGFAQGHWPGHVLGMPQAVTQWLADSEQG</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="47" xmlns="http://uniprot.org/uniprot">
    <accession>A9BPX4</accession>
    <name>A9BPX4_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Daci_0447</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="4" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX33093.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_008063316.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_0447"/>
    <dbReference type="PRIDE" id="A9BPX4"/>
    <dbReference type="EnsemblBacteria" id="ABX33093">
        <property type="protein sequence ID" value="ABX33093"/>
        <property type="gene ID" value="Daci_0447"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_0447"/>
    <dbReference type="eggNOG" id="ENOG5032UZ7">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_171581_1_0_4"/>
    <dbReference type="OMA" id="GHHPKSP"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR021682">
        <property type="entry name" value="DUF2933"/>
    </dbReference>
    <dbReference type="Pfam" id="PF11666">
        <property type="entry name" value="DUF2933"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="2" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="20"/>
            <end position="36"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="42"/>
            <end position="61"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="66"/>
            <end position="90"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ABX33093.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="90" mass="10092" checksum="9AFFC0468DEA3768" modified="2008-01-15" version="1">MQHQHTQTPSDRPRFWRSRYGVAFLIIAAVAAYFLLKEHTAHVAGYLPFLLLAACPLMHLFMHRGHGHGGHDHAARQGEEGAAPAKEQKQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="50" xmlns="http://uniprot.org/uniprot">
    <accession>A9BQ14</accession>
    <name>A9BQ14_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Putative hemolysin-like protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Daci_0583</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="2" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX33229.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_0583"/>
    <dbReference type="PRIDE" id="A9BQ14"/>
    <dbReference type="EnsemblBacteria" id="ABX33229">
        <property type="protein sequence ID" value="ABX33229"/>
        <property type="gene ID" value="Daci_0583"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_0583"/>
    <dbReference type="eggNOG" id="COG3176">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_058962_1_1_4"/>
    <dbReference type="OMA" id="YLRLGAW"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016181">
        <property type="entry name" value="Acyl_CoA_acyltransferase"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55729">
        <property type="entry name" value="SSF55729"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ABX33229.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="320" mass="35481" checksum="C1AA71260DB7DD97" modified="2008-01-15" version="1">MTCCCNATVAGLSWPLSTMAARRQTEWHRQVTDCVQHDEEGGHMDVLDTLRNAAIDVAKPPLSALLQPPQAADKPLRLDVRWARHLDEVRQVQRLRHAVFAAEMGAVLQTPLAGHDIDAFDDFCEHLMVCDADKGVVIGTYRLLTPTQALRAGGLYSDQEFDLAPLHAWRPRMVELGRSCVHASHRQGGVILALWGALAEFMQRNQLDAMVGCASIPMQYPGLAHGEGPARVWQQLRQTHLAEPELQVRPRVALPEELASVSTSGMSVEPPALIQGYLRTGAKVLGAPAWDSDFNTADLPIMMRMQDLPSRYMRLFTRRG</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="78" xmlns="http://uniprot.org/uniprot">
    <accession>A9BQS1</accession>
    <name>A9BQS1_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="8">ABC transporter related</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="8" type="ordered locus">Daci_0127</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="9" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX32773.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012202066.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_0127"/>
    <dbReference type="PRIDE" id="A9BQS1"/>
    <dbReference type="EnsemblBacteria" id="ABX32773">
        <property type="protein sequence ID" value="ABX32773"/>
        <property type="gene ID" value="Daci_0127"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_0127"/>
    <dbReference type="eggNOG" id="COG1136">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_000604_1_22_4"/>
    <dbReference type="OMA" id="RTVMHEE"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd03255">
        <property type="entry name" value="ABC_MJ0796_LolCDE_FtsE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003593">
        <property type="entry name" value="AAA+_ATPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003439">
        <property type="entry name" value="ABC_transporter-like_ATP-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017871">
        <property type="entry name" value="ABC_transporter-like_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017911">
        <property type="entry name" value="MacB_ATP-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00005">
        <property type="entry name" value="ABC_tran"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00382">
        <property type="entry name" value="AAA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00211">
        <property type="entry name" value="ABC_TRANSPORTER_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50893">
        <property type="entry name" value="ABC_TRANSPORTER_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3 6" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="1" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="5" id="KW-0472">Membrane</keyword>
    <keyword evidence="2 6" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4" id="KW-1278">Translocase</keyword>
    <feature type="domain" description="ABC transporter" evidence="7">
        <location>
            <begin position="21"/>
            <end position="252"/>
        </location>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <begin position="57"/>
            <end position="64"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022967"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00434"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="PROSITE" id="PS50893"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="ABX32773.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="252" mass="27136" checksum="2F7223F4F4112B09" modified="2008-01-15" version="1">MNVMNAHSPAPTAAPRTAPSLEAVRLCKSFLSGMVSVQVLQGLSVSLYPGELSLISGPSGCGKSTLLSLMSGLQAPDSGHAMALGEDLGKLGTRALEKFRLRHTGFVFQGFNLFPALTAIEQVQLPLGYMGLRSDEALRRAQQALDEVGLSHRSHMRPAELSGGEKQRVAIARAMAKAPQLLFADEPTSALDAESGQRVIDILHRAARNHGTTVLCVSHDPRLVRHADRVLGMEDGAIRSDWRQSCPIKEKE</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="84" xmlns="http://uniprot.org/uniprot">
    <accession>A9BQU4</accession>
    <name>A9BQU4_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="6">GntR domain protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ordered locus">Daci_0253</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="7" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX32899.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012202192.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_0253"/>
    <dbReference type="PRIDE" id="A9BQU4"/>
    <dbReference type="EnsemblBacteria" id="ABX32899">
        <property type="protein sequence ID" value="ABX32899"/>
        <property type="gene ID" value="Daci_0253"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_0253"/>
    <dbReference type="eggNOG" id="COG2186">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_017584_9_1_4"/>
    <dbReference type="OMA" id="ETDTTAW"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003700">
        <property type="term" value="F:DNA-binding transcription factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd07377">
        <property type="entry name" value="WHTH_GntR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.120.530">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011711">
        <property type="entry name" value="GntR_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008920">
        <property type="entry name" value="TF_FadR/GntR_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000524">
        <property type="entry name" value="Tscrpt_reg_HTH_GntR"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036390">
        <property type="entry name" value="WH_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07729">
        <property type="entry name" value="FCD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00392">
        <property type="entry name" value="GntR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00035">
        <property type="entry name" value="HTHGNTR"/>
    </dbReference>
    <dbReference type="SMART" id="SM00895">
        <property type="entry name" value="FCD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00345">
        <property type="entry name" value="HTH_GNTR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46785">
        <property type="entry name" value="SSF46785"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48008">
        <property type="entry name" value="SSF48008"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50949">
        <property type="entry name" value="HTH_GNTR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0804">Transcription</keyword>
    <keyword evidence="1" id="KW-0805">Transcription regulation</keyword>
    <feature type="domain" description="HTH gntR-type" evidence="5">
        <location>
            <begin position="32"/>
            <end position="100"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="4">
        <location>
            <begin position="1"/>
            <end position="26"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023015"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023163"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="PROSITE" id="PS50949"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="ABX32899.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="262" mass="28806" checksum="794894A89950CF0A" modified="2008-01-15" version="1">MISTMESSAKGFPASPPTIELPLRGKSGRSGRNLAALLFDEFASKIRNGLLAEGEKLPTESSLVQTYEVSRTVVREALSRLQASGLVETRHGIGTFVRAAQPASTLMLNADELTAAVDVMAVLELRISLETESAGLAALRRSPEQLQGIRMALQAFEIAFARGEDTVAHDLAFHTQIAEATGNRYFGDILRHFGAQLIPRTRIASIHQPQRDPDYLRRVNREHEEILAAIERQDADSARAAMRIHLTNSRERLRLAQKTSAA</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-05-25" version="51" xmlns="http://uniprot.org/uniprot">
    <accession>A9BR44</accession>
    <name>A9BR44_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_0456</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX33102.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012202388.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_0456"/>
    <dbReference type="EnsemblBacteria" id="ABX33102">
        <property type="protein sequence ID" value="ABX33102"/>
        <property type="gene ID" value="Daci_0456"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_0456"/>
    <dbReference type="eggNOG" id="ENOG5032YZW">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_185285_0_0_4"/>
    <dbReference type="OMA" id="PGDAESW"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006355">
        <property type="term" value="P:regulation of transcription, DNA-templated"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010985">
        <property type="entry name" value="Ribbon_hlx_hlx"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47598">
        <property type="entry name" value="SSF47598"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="26"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX33102.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="91" mass="9983" checksum="64E84DE1A0A34623" modified="2008-01-15" version="1">MSSPASKRTTKRVGIGARPPANPHAEAWIRQGDADALGKGDLYTARLTLDITPAMRARIKVSAFTQGVTVAELLRGLLEREFPEQRRENTP</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="70" xmlns="http://uniprot.org/uniprot">
    <accession>A9BRD9</accession>
    <name>A9BRD9_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Response regulator receiver protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Daci_0654</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="4" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX33300.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012202586.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_0654"/>
    <dbReference type="PRIDE" id="A9BRD9"/>
    <dbReference type="EnsemblBacteria" id="ABX33300">
        <property type="protein sequence ID" value="ABX33300"/>
        <property type="gene ID" value="Daci_0654"/>
    </dbReference>
    <dbReference type="GeneID" id="60690995"/>
    <dbReference type="KEGG" id="dac:Daci_0654"/>
    <dbReference type="eggNOG" id="COG0745">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_000445_69_17_4"/>
    <dbReference type="OMA" id="MHFTKPF"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000160">
        <property type="term" value="P:phosphorelay signal transduction system"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011006">
        <property type="entry name" value="CheY-like_superfamily"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001789">
        <property type="entry name" value="Sig_transdc_resp-reg_receiver"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00072">
        <property type="entry name" value="Response_reg"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00448">
        <property type="entry name" value="REC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52172">
        <property type="entry name" value="SSF52172"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50110">
        <property type="entry name" value="RESPONSE_REGULATORY"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0597">Phosphoprotein</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Response regulatory" evidence="2">
        <location>
            <begin position="3"/>
            <end position="119"/>
        </location>
    </feature>
    <feature type="modified residue" description="4-aspartylphosphate" evidence="1">
        <location>
            <position position="52"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00169"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS50110"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ABX33300.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="120" mass="13222" checksum="BCFE136B81EB3A4D" modified="2008-01-15" version="1">MRSILAVDDSPSMRKMVAFTLAGAGFRVVEAVDGVDALEKAQLEQVDLVLADQNMPRLDGIGLTRKLREDPKFQNTPILILTTESSDQMKQAGRAAGATGWLVKPFDPNRLIEVIQKVMR</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="60" xmlns="http://uniprot.org/uniprot">
    <accession>A9BRJ2</accession>
    <name>A9BRJ2_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Transcriptional regulator, XRE family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_0707</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX33353.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012202639.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_0707"/>
    <dbReference type="PRIDE" id="A9BRJ2"/>
    <dbReference type="EnsemblBacteria" id="ABX33353">
        <property type="protein sequence ID" value="ABX33353"/>
        <property type="gene ID" value="Daci_0707"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_0707"/>
    <dbReference type="eggNOG" id="COG1396">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_066192_4_3_4"/>
    <dbReference type="OMA" id="LMAGLHS"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd00093">
        <property type="entry name" value="HTH_XRE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.260.40">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001387">
        <property type="entry name" value="Cro/C1-type_HTH"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010982">
        <property type="entry name" value="Lambda_DNA-bd_dom_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01381">
        <property type="entry name" value="HTH_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00530">
        <property type="entry name" value="HTH_XRE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47413">
        <property type="entry name" value="SSF47413"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50943">
        <property type="entry name" value="HTH_CROC1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HTH cro/C1-type" evidence="1">
        <location>
            <begin position="8"/>
            <end position="63"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS50943"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX33353.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="104" mass="11306" checksum="44A8C295B713D76D" modified="2008-01-15" version="1">MRHIGERIRARRAELGMTQGRLAEAAGITASAVSQIESGAIRTLKNDTLARVALALQTTALELTAGLEDDNAPLPVDEQRLLESYRALPAPLQEIAHRLIKALR</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="63" xmlns="http://uniprot.org/uniprot">
    <accession>A9BRQ5</accession>
    <name>A9BRQ5_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Peptidase M22 glycoprotease</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_0976</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX33622.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_0976"/>
    <dbReference type="PRIDE" id="A9BRQ5"/>
    <dbReference type="EnsemblBacteria" id="ABX33622">
        <property type="protein sequence ID" value="ABX33622"/>
        <property type="gene ID" value="Daci_0976"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_0976"/>
    <dbReference type="eggNOG" id="COG1214">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_064886_2_1_4"/>
    <dbReference type="OMA" id="DEVYWGC"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008233">
        <property type="term" value="F:peptidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006508">
        <property type="term" value="P:proteolysis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0002949">
        <property type="term" value="P:tRNA threonylcarbamoyladenosine modification"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043129">
        <property type="entry name" value="ATPase_NBD"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000905">
        <property type="entry name" value="Gcp-like_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR022496">
        <property type="entry name" value="T6A_TsaB"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11735">
        <property type="entry name" value="PTHR11735"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11735:SF11">
        <property type="entry name" value="PTHR11735:SF11"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00814">
        <property type="entry name" value="TsaD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53067">
        <property type="entry name" value="SSF53067"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR03725">
        <property type="entry name" value="T6A_YeaZ"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="2" id="KW-0645">Protease</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="TsaD" evidence="1">
        <location>
            <begin position="73"/>
            <end position="173"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF00814"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX33622.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="283" mass="29504" checksum="A1CCD9D74186D420" modified="2008-01-15" version="1">MQHGRQVYAGHCSPAGRGTGGAPIILHLLRHRRLPQAMNLLALDTSTDTLSIAVQHGDAVWEHSGPGGPQTSTELIPAILALMAQAGLEFAELQAIVFGRGPGSFTGLRTACSVAQGLAFAARVPVLPMDSLLAVAEQARMQYGCTDLIAVIDARMNEVYHAAYHWSDGRWNDIGEQSGDFGLCAPEALQLPPGTVVAGNALAAYGERLAPQAIHLAALPTAAAMLRLAPALLAADRALPADQALPRYIRDKVAQTTAEREAAKAAAALALATPTPEATPPAP</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="69" xmlns="http://uniprot.org/uniprot">
    <accession>A9BRR7</accession>
    <name>A9BRR7_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="5 7">Threonylcarbamoyl-AMP synthase</fullName>
            <shortName evidence="7">TC-AMP synthase</shortName>
            <ecNumber evidence="4 7">2.7.7.87</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="6 7">L-threonylcarbamoyladenylate synthase</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="10" type="ordered locus">Daci_0988</name>
    </gene>
    <organism evidence="10 11">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="10 11" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="11">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="11" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="11">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="7">Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1 7">
            <text>ATP + hydrogencarbonate + L-threonine = diphosphate + H2O + L-threonylcarbamoyladenylate</text>
            <dbReference type="Rhea" id="RHEA:36407"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:17544"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:33019"/>
            <dbReference type="ChEBI" id="CHEBI:57926"/>
            <dbReference type="ChEBI" id="CHEBI:73682"/>
            <dbReference type="EC" id="2.7.7.87"/>
        </reaction>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="2 7">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="3 7">Belongs to the SUA5 family.</text>
    </comment>
    <dbReference type="EC" id="2.7.7.87" evidence="4 7"/>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX33634.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012202920.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_0988"/>
    <dbReference type="PRIDE" id="A9BRR7"/>
    <dbReference type="EnsemblBacteria" id="ABX33634">
        <property type="protein sequence ID" value="ABX33634"/>
        <property type="gene ID" value="Daci_0988"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_0988"/>
    <dbReference type="eggNOG" id="COG0009">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_031397_0_2_4"/>
    <dbReference type="OMA" id="GMLKSHY"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003725">
        <property type="term" value="F:double-stranded RNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0061710">
        <property type="term" value="F:L-threonylcarbamoyladenylate synthase"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008033">
        <property type="term" value="P:tRNA processing"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.11030">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017945">
        <property type="entry name" value="DHBP_synth_RibB-like_a/b_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038385">
        <property type="entry name" value="Sua5/YwlC_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005145">
        <property type="entry name" value="Sua5_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010923">
        <property type="entry name" value="T(6)A37_SUA5"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006070">
        <property type="entry name" value="YrdC-like_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03481">
        <property type="entry name" value="SUA5"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01300">
        <property type="entry name" value="Sua5_yciO_yrdC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF004930">
        <property type="entry name" value="Tln_factor_SUA5"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55821">
        <property type="entry name" value="SSF55821"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00057">
        <property type="entry name" value="TIGR00057"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51163">
        <property type="entry name" value="YRDC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="7 8" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="7" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="7 8" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="7" id="KW-0548">Nucleotidyltransferase</keyword>
    <keyword evidence="11" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="7" id="KW-0808">Transferase</keyword>
    <keyword evidence="7" id="KW-0819">tRNA processing</keyword>
    <feature type="domain" description="YrdC-like" evidence="9">
        <location>
            <begin position="8"/>
            <end position="199"/>
        </location>
    </feature>
    <feature type="binding site" evidence="8">
        <location>
            <position position="30"/>
        </location>
        <ligand>
            <name>L-threonine</name>
            <dbReference type="ChEBI" id="CHEBI:57926"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="8">
        <location>
            <position position="53"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="8">
        <location>
            <position position="62"/>
        </location>
        <ligand>
            <name>L-threonine</name>
            <dbReference type="ChEBI" id="CHEBI:57926"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="8">
        <location>
            <position position="116"/>
        </location>
        <ligand>
            <name>L-threonine</name>
            <dbReference type="ChEBI" id="CHEBI:57926"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="8">
        <location>
            <position position="142"/>
        </location>
        <ligand>
            <name>L-threonine</name>
            <dbReference type="ChEBI" id="CHEBI:57926"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="8">
        <location>
            <position position="144"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="8">
        <location>
            <position position="152"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="8">
        <location>
            <position position="181"/>
        </location>
        <ligand>
            <name>L-threonine</name>
            <dbReference type="ChEBI" id="CHEBI:57926"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="8">
        <location>
            <position position="195"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="8">
        <location>
            <position position="233"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001803"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00004496"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00007663"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00012584"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00015492"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00029774"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="PIRNR" id="PIRNR004930"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="PIRSR" id="PIRSR004930-1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="9">
        <source>
            <dbReference type="PROSITE" id="PS51163"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="EMBL" id="ABX33634.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="332" mass="35116" checksum="62411B5EA741CA4D" modified="2008-01-15" version="1">MILDGTLAASVQAAAQALQRGELLGLPTETVYGLAADADNDAAVAQIFTAKGRPPNHPLIVHVADSGAITRYAREVPLFAQQLIDAFWPGPLTLILPRLPQAARASTGGQDSVGLRCPSHPVAHAVLAACRQLQPPVWGVSAPSANKFGRVSPTTAAHVADEFGDTLLVLDGGACEVGIESTIVDCTRGVPVLLRPGAITRDDIERACGQRPLSKEELQENTPRASGTLLAHYAPNAQVRLMDARQLQAGLDVLGADARNLAVYHRTPLRTASRAVTLRAMPADAAATARELFGALRDFDEVGARLIWIETPPDTPDWEGVRDRLLRAAAAG</sequence>
</entry>
<entry dataset="Swiss-Prot" created="2009-04-14" modified="2022-08-03" version="71" xmlns="http://uniprot.org/uniprot">
    <accession>A9BRX3</accession>
    <name>RS11_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">30S ribosomal protein S11</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="1" type="primary">rpsK</name>
        <name type="ordered locus">Daci_1045</name>
    </gene>
    <organism>
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference key="1">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain>DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="1">Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine-Dalgarno cleft in the 70S ribosome.</text>
    </comment>
    <comment type="subunit">
        <text evidence="1">Part of the 30S ribosomal subunit. Interacts with proteins S7 and S18. Binds to IF-3.</text>
    </comment>
    <comment type="similarity">
        <text evidence="1">Belongs to the universal ribosomal protein uS11 family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX33690.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012202976.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A9BRX3"/>
    <dbReference type="SMR" id="A9BRX3"/>
    <dbReference type="STRING" id="398578.Daci_1045"/>
    <dbReference type="PRIDE" id="A9BRX3"/>
    <dbReference type="EnsemblBacteria" id="ABX33690">
        <property type="protein sequence ID" value="ABX33690"/>
        <property type="gene ID" value="Daci_1045"/>
    </dbReference>
    <dbReference type="GeneID" id="60685606"/>
    <dbReference type="KEGG" id="dac:Daci_1045"/>
    <dbReference type="eggNOG" id="COG0100">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_072439_5_0_4"/>
    <dbReference type="OMA" id="KWGVAHI"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005840">
        <property type="term" value="C:ribosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0019843">
        <property type="term" value="F:rRNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003735">
        <property type="term" value="F:structural constituent of ribosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006412">
        <property type="term" value="P:translation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.420.80">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01310">
        <property type="entry name" value="Ribosomal_S11"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001971">
        <property type="entry name" value="Ribosomal_S11"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019981">
        <property type="entry name" value="Ribosomal_S11_bac-type"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018102">
        <property type="entry name" value="Ribosomal_S11_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036967">
        <property type="entry name" value="Ribosomal_S11_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11759">
        <property type="entry name" value="PTHR11759"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00411">
        <property type="entry name" value="Ribosomal_S11"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF002131">
        <property type="entry name" value="Ribosomal_S11"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR03632">
        <property type="entry name" value="uS11_bact"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00054">
        <property type="entry name" value="RIBOSOMAL_S11"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword id="KW-1185">Reference proteome</keyword>
    <keyword id="KW-0687">Ribonucleoprotein</keyword>
    <keyword id="KW-0689">Ribosomal protein</keyword>
    <keyword id="KW-0694">RNA-binding</keyword>
    <keyword id="KW-0699">rRNA-binding</keyword>
    <feature type="chain" id="PRO_1000141081" description="30S ribosomal protein S11">
        <location>
            <begin position="1"/>
            <end position="134"/>
        </location>
    </feature>
    <evidence type="ECO:0000255" key="1">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01310"/>
        </source>
    </evidence>
    <sequence length="134" mass="14175" checksum="6D874FED195F82F0" modified="2008-01-15" version="1">MAKSPANNAAQRVRKKVRKNISDGIAHVHASFNNTIITITDRQGNALSWASSGGQGFKGSRKSTPFAAQVASEVAGRAAIEQGIKNLDVEIKGPGPGRESSVRALGALGIRITSIADVTPVPHNGCRPQKRRRI</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="59" xmlns="http://uniprot.org/uniprot">
    <accession>A9BS30</accession>
    <name>A9BS30_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Precorrin 3B synthase CobZ</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ordered locus">Daci_0794</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="6" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>FAD</name>
            <dbReference type="ChEBI" id="CHEBI:57692"/>
        </cofactor>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX33440.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012202726.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_0794"/>
    <dbReference type="PRIDE" id="A9BS30"/>
    <dbReference type="EnsemblBacteria" id="ABX33440">
        <property type="protein sequence ID" value="ABX33440"/>
        <property type="gene ID" value="Daci_0794"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_0794"/>
    <dbReference type="eggNOG" id="COG1053">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_011398_4_6_4"/>
    <dbReference type="OMA" id="QPGQIAY"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016491">
        <property type="term" value="F:oxidoreductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008152">
        <property type="term" value="P:metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.50.50.60">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.700.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012831">
        <property type="entry name" value="CobZ"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003953">
        <property type="entry name" value="FAD-binding_2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036188">
        <property type="entry name" value="FAD/NAD-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027477">
        <property type="entry name" value="Succ_DH/fumarate_Rdtase_cat_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00890">
        <property type="entry name" value="FAD_binding_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51905">
        <property type="entry name" value="SSF51905"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56425">
        <property type="entry name" value="SSF56425"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR02485">
        <property type="entry name" value="CobZ_N-term"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0285">Flavoprotein</keyword>
    <keyword evidence="3" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="FAD_binding_2" evidence="4">
        <location>
            <begin position="4"/>
            <end position="433"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001974"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022630"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023002"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="Pfam" id="PF00890"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="ABX33440.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="474" mass="51793" checksum="E8628664FAA188CD" modified="2008-01-15" version="1">MDPDVLVIGGGNAALCAALMAREAGRSVLLLEAAPRDWRGGNSGHTRNLRCMHDAPQDVLVEAYPEEEFWQDLLKVTGGITNEHLARMVIRASSTCRDWMRRHGVHFQPPLSGALHVARTNAFFMGGGKALVNAYYRSAERLGVQVRYASPVDRLEIEDGEFKAAWVGEQRITAKTCVLAAGGFESNREWLREAWGQNARGEWPSDNFLIRGTAFNRGVLLRHLLEDHGADRIGDPTQAHMVAIDARAPLYDGGICTRIDCVSLGVVVNREAERFYDEGEDFWPKRYAIWGRLVAQQPGQTAWSVIDAKAIGRFMPPVFPGVRADSLPELARKLGLDEERFMQTLDAYNGACRVGHFDHTALDDCHTEGLAPAKTHWARPIDTAPFYGYQLRPGVTFTYLGLETDDTAAVRFAGQPSTNLFVAGEMMAGNVLGKGYTAGVGMSIGTAFGRIAGRNAALAATGHPAVRGAVTEKA</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="54" xmlns="http://uniprot.org/uniprot">
    <accession>A9BS66</accession>
    <name>A9BS66_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="10">AzlC family protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="10" type="ordered locus">Daci_0830</name>
    </gene>
    <organism evidence="10 11">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="10 11" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="11">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="11" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="11">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the AzlC family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX33476.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012202762.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_0830"/>
    <dbReference type="PRIDE" id="A9BS66"/>
    <dbReference type="EnsemblBacteria" id="ABX33476">
        <property type="protein sequence ID" value="ABX33476"/>
        <property type="gene ID" value="Daci_0830"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_0830"/>
    <dbReference type="eggNOG" id="COG1296">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_065777_1_0_4"/>
    <dbReference type="OMA" id="WLSWQVS"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011606">
        <property type="entry name" value="Brnchd-chn_aa_trnsp_permease"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR34979">
        <property type="entry name" value="PTHR34979"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03591">
        <property type="entry name" value="AzlC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="7 9" id="KW-0472">Membrane</keyword>
    <keyword evidence="11" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="5 9" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="6 9" id="KW-1133">Transmembrane helix</keyword>
    <keyword evidence="3" id="KW-0813">Transport</keyword>
    <feature type="transmembrane region" description="Helical" evidence="9">
        <location>
            <begin position="26"/>
            <end position="45"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="9">
        <location>
            <begin position="52"/>
            <end position="75"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="9">
        <location>
            <begin position="81"/>
            <end position="101"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="9">
        <location>
            <begin position="113"/>
            <end position="129"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="9">
        <location>
            <begin position="172"/>
            <end position="189"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="9">
        <location>
            <begin position="220"/>
            <end position="237"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="8">
        <location>
            <begin position="248"/>
            <end position="287"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="8">
        <location>
            <begin position="262"/>
            <end position="287"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00010735"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022448"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="EMBL" id="ABX33476.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="287" mass="30924" checksum="FBC20BF88737C7CF" modified="2008-01-15" version="1">MNLQPLVERARGIARDPAFMTGVRDMSGTALGIGAWGLVTGVAMIKSGMSLPLALFMGLLVYAGSAQLAVLPLMAVGAPMWVVWFTAICVNLRFVILSSMWRSYFAHLRLRHRLAIAYFSGDVIFVGFMKRYPDARPQPEQLPYFWGAASTNWLAWQIPSTLGILLADQVPLSWGLGFAGVLALMGVLLSMLNDRATWVAGVVAASAAVAAFALPLKLNILVAIAAAVAAGLLAETLQQRLRALQAPEKGEPGPVILPPDTARGERHARLPLDEDARPVQTKEKETL</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="61" xmlns="http://uniprot.org/uniprot">
    <accession>A9BS81</accession>
    <name>A9BS81_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Putative D-serine deaminase (D-serine dehydratase) protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Daci_0845</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="4" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the DSD1 family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX33491.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012202777.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_0845"/>
    <dbReference type="PRIDE" id="A9BS81"/>
    <dbReference type="EnsemblBacteria" id="ABX33491">
        <property type="protein sequence ID" value="ABX33491"/>
        <property type="gene ID" value="Daci_0845"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_0845"/>
    <dbReference type="eggNOG" id="COG3616">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_031639_3_0_4"/>
    <dbReference type="OMA" id="YVSHDDG"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016829">
        <property type="term" value="F:lyase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.37.20">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.20.20.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001608">
        <property type="entry name" value="Ala_racemase_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR026956">
        <property type="entry name" value="D-ser_dehydrat-like_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR042208">
        <property type="entry name" value="D-ser_dehydrat-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029066">
        <property type="entry name" value="PLP-binding_barrel"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01168">
        <property type="entry name" value="Ala_racemase_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF14031">
        <property type="entry name" value="D-ser_dehydrat"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM01119">
        <property type="entry name" value="D-ser_dehydrat"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51419">
        <property type="entry name" value="SSF51419"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="D-ser_dehydrat" evidence="2">
        <location>
            <begin position="312"/>
            <end position="411"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00005323"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="SMART" id="SM01119"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ABX33491.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="424" mass="45663" checksum="9F24445C73AB1C1C" modified="2008-01-15" version="1">MSEASTAGMADVVSPLDKGLGALSAPCAPQDAAAQGWNLLREDLGLPAAVLSQSRLAHNLAWMQRFVDAYGAKLAPHGKTTMAPRLFRQQIDAGAWGITLATAQQTRVAHAHGVRRVLMANQLIGRRNMAAVAELLADPGFEFFCLVDCAEQVEQLAAFFGAAGQSVQVLIELGPPGGRTGVRSDAQMQPLLDALARAGVAVRLAGIEVYEGVLKEEDAIRTLLRRAVLWLERLASDGRLQRSPAVLTGAGSAWYDVVAQEFGKADIGGALDLVLRPGCYLTHDAGIYQAAQQRIDQTNPVAQQMRASLLPALQVWAYVQSLPEPGRAIVALGKRDTAFEAVPPRPALRYRPGDAAPVAAPPHWEVTAMMDQHAFLKVAEDDGLRVGDMLAFDISHPCLTFDKWRQMAVVNDSYDVVDVIATYF</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="65" xmlns="http://uniprot.org/uniprot">
    <accession>A9BSA3</accession>
    <name>A9BSA3_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="3">AMP-dependent synthetase and ligase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Daci_1072</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="4" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX33717.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012203003.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_1072"/>
    <dbReference type="PRIDE" id="A9BSA3"/>
    <dbReference type="EnsemblBacteria" id="ABX33717">
        <property type="protein sequence ID" value="ABX33717"/>
        <property type="gene ID" value="Daci_1072"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_1072"/>
    <dbReference type="eggNOG" id="COG0318">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_000022_59_7_4"/>
    <dbReference type="OMA" id="IGRFKEM"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016874">
        <property type="term" value="F:ligase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.300.30">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.12780">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025110">
        <property type="entry name" value="AMP-bd_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045851">
        <property type="entry name" value="AMP-bd_C_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020845">
        <property type="entry name" value="AMP-binding_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000873">
        <property type="entry name" value="AMP-dep_Synth/Lig"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR042099">
        <property type="entry name" value="ANL_N_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00501">
        <property type="entry name" value="AMP-binding"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13193">
        <property type="entry name" value="AMP-binding_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00455">
        <property type="entry name" value="AMP_BINDING"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-0436">Ligase</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="AMP-binding" evidence="1">
        <location>
            <begin position="15"/>
            <end position="439"/>
        </location>
    </feature>
    <feature type="domain" description="AMP-binding_C" evidence="2">
        <location>
            <begin position="447"/>
            <end position="522"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF00501"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF13193"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ABX33717.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="532" mass="57864" checksum="2B0D08EA46D42FAC" modified="2008-01-15" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="58" xmlns="http://uniprot.org/uniprot">
    <accession>A9BSE8</accession>
    <name>A9BSE8_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Membrane protein AbrB duplication</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_1117</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX33762.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012203048.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_1117"/>
    <dbReference type="PRIDE" id="A9BSE8"/>
    <dbReference type="EnsemblBacteria" id="ABX33762">
        <property type="protein sequence ID" value="ABX33762"/>
        <property type="gene ID" value="Daci_1117"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_1117"/>
    <dbReference type="eggNOG" id="COG3180">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_050210_2_0_4"/>
    <dbReference type="OMA" id="QPNPWLF"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0010468">
        <property type="term" value="P:regulation of gene expression"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017516">
        <property type="entry name" value="AbrB_dup"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007820">
        <property type="entry name" value="AbrB_fam"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR38457">
        <property type="entry name" value="PTHR38457"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF05145">
        <property type="entry name" value="AbrB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF038991">
        <property type="entry name" value="Protein_AbrB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR03082">
        <property type="entry name" value="Gneg_AbrB_dup"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="33"/>
            <end position="51"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="63"/>
            <end position="80"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="86"/>
            <end position="109"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="153"/>
            <end position="174"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="194"/>
            <end position="211"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="220"/>
            <end position="238"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="244"/>
            <end position="261"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="273"/>
            <end position="294"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="326"/>
            <end position="350"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX33762.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="364" mass="38898" checksum="B8838EB5B450B5C4" modified="2008-01-15" version="1">MPERRPIFLLRIALTLLGAFAAAQLCLWLRTPLPWMLGPLIATSLASILGAPTASAGRLRNGGQWIIGASLGLYFTPAVVQLIAGLWWAIAVAIVWALLLGWGFGAWLYRVHAPRMPQIPAGEMRATTYFAGAIGAASEMTLLAERENARTDLVAASHSLRLVIVTVSIPFALQWSGLHGLEGLTPPSIRIVEWPGLALLAVLTGLGAWAMDRLKRANPWFLGALLVSMLLTMCGQELSAVPQALVNVAQLVIGISLGVRFKREFLHTAPRWLGSVAVGTVGLMAICAGFAWLLHLAVDLPWVTLLLGTSPGGITEMAITAKVLQLGVPVVTAFQVCRLIAVLLLVAPLFRWVEARGPAASRTA</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="48" xmlns="http://uniprot.org/uniprot">
    <accession>A9BSS3</accession>
    <name>A9BSS3_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Heat shock protein DnaJ domain protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Daci_1434</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="4" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX34078.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012203364.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_1434"/>
    <dbReference type="PRIDE" id="A9BSS3"/>
    <dbReference type="EnsemblBacteria" id="ABX34078">
        <property type="protein sequence ID" value="ABX34078"/>
        <property type="gene ID" value="Daci_1434"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_1434"/>
    <dbReference type="eggNOG" id="COG2214">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_481225_0_0_4"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0346">Stress response</keyword>
    <keyword evidence="2" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="2" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="320"/>
            <end position="338"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="105"/>
            <end position="135"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="544"/>
            <end position="566"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Pro residues" evidence="1">
        <location>
            <begin position="110"/>
            <end position="135"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ABX34078.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="566" mass="63329" checksum="0C969277BA7AA329" modified="2008-01-15" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="42" xmlns="http://uniprot.org/uniprot">
    <accession>A9BSU6</accession>
    <name>A9BSU6_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Daci_1663</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="2" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX34306.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012203591.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_1663"/>
    <dbReference type="PRIDE" id="A9BSU6"/>
    <dbReference type="EnsemblBacteria" id="ABX34306">
        <property type="protein sequence ID" value="ABX34306"/>
        <property type="gene ID" value="Daci_1663"/>
    </dbReference>
    <dbReference type="GeneID" id="60686152"/>
    <dbReference type="KEGG" id="dac:Daci_1663"/>
    <dbReference type="eggNOG" id="ENOG50315C6">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_120353_0_0_4"/>
    <dbReference type="OMA" id="TNPFLHM"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014993">
        <property type="entry name" value="DUF1841"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08897">
        <property type="entry name" value="DUF1841"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ABX34306.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="152" mass="16797" checksum="6D72DF75C07D76AC" modified="2008-01-15" version="1">MFNPTQADVRRFFCGVRTKMLNGAPMEAIETLASLWIAEHPEYFDDLADVDAALLRDYDATPGVTNPFLHLSMHLSISEQCSIDQPRGIRQAVELLSRRLDSLHDAHHATMECLGQMLWESQRSGRPPDGEAYIAAVQRRATSDGAKATGGA</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="61" xmlns="http://uniprot.org/uniprot">
    <accession>A9BT06</accession>
    <name>A9BT06_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="6 18">Diacylglycerol kinase</fullName>
            <ecNumber evidence="5 18">2.7.1.107</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="19" type="ordered locus">Daci_1723</name>
    </gene>
    <organism evidence="19 20">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="19 20" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="20">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="20" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="20">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="18">Catalyzes the ATP-dependent phosphorylation of sn-l,2-diacylglycerol (DAG) to phosphatidic acid. Involved in the recycling of diacylglycerol produced as a by-product during membrane-derived oligosaccharide (MDO) biosynthesis.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="18">
            <text>a 1,2-diacyl-sn-glycerol + ATP = a 1,2-diacyl-sn-glycero-3-phosphate + ADP + H(+)</text>
            <dbReference type="Rhea" id="RHEA:10272"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:17815"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:58608"/>
            <dbReference type="ChEBI" id="CHEBI:456216"/>
            <dbReference type="EC" id="2.7.1.107"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </cofactor>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="3 18">Cell inner membrane</location>
            <topology evidence="3 18">Multi-pass membrane protein</topology>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="2">Membrane</location>
            <topology evidence="2">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="4 18">Belongs to the bacterial diacylglycerol kinase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="18">Lacks conserved residue(s) required for the propagation of feature annotation.</text>
    </comment>
    <dbReference type="EC" id="2.7.1.107" evidence="5 18"/>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX34366.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012203651.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_1723"/>
    <dbReference type="PRIDE" id="A9BT06"/>
    <dbReference type="EnsemblBacteria" id="ABX34366">
        <property type="protein sequence ID" value="ABX34366"/>
        <property type="gene ID" value="Daci_1723"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_1723"/>
    <dbReference type="eggNOG" id="COG0818">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_112343_3_0_4"/>
    <dbReference type="OMA" id="ITNEWHE"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004143">
        <property type="term" value="F:diacylglycerol kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006654">
        <property type="term" value="P:phosphatidic acid biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016310">
        <property type="term" value="P:phosphorylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd14264">
        <property type="entry name" value="DAGK_IM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.287.3610">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000829">
        <property type="entry name" value="DAGK"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR033718">
        <property type="entry name" value="DAGK_prok"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036945">
        <property type="entry name" value="DAGK_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR34299">
        <property type="entry name" value="PTHR34299"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01219">
        <property type="entry name" value="DAGK_prokar"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="14 18" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="8 18" id="KW-0997">Cell inner membrane</keyword>
    <keyword evidence="7" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="13 18 19" id="KW-0418">Kinase</keyword>
    <keyword evidence="18" id="KW-0443">Lipid metabolism</keyword>
    <keyword evidence="15" id="KW-0460">Magnesium</keyword>
    <keyword evidence="17 18" id="KW-0472">Membrane</keyword>
    <keyword evidence="11" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="12 18" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="18" id="KW-1208">Phospholipid metabolism</keyword>
    <keyword evidence="20" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="9 18" id="KW-0808">Transferase</keyword>
    <keyword evidence="10 18" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="16 18" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="18">
        <location>
            <begin position="69"/>
            <end position="88"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="18">
        <location>
            <begin position="109"/>
            <end position="130"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001946"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00004429"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00005967"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00012133"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00017575"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00022519"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="12">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="13">
        <source>
            <dbReference type="ARBA" id="ARBA00022777"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="14">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="15">
        <source>
            <dbReference type="ARBA" id="ARBA00022842"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="16">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="17">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="18">
        <source>
            <dbReference type="RuleBase" id="RU363065"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="19">
        <source>
            <dbReference type="EMBL" id="ABX34366.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="20">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="137" mass="15607" checksum="DFBB2E5B669BC41F" modified="2008-01-15" version="1">MKNNSTKPNIFVNQQKSRKGLNRLIHATRYSWRGILDAWHEKAFRLECKIFVISTPLALLIGNGWLEKFLLIASIWVLMLIEVLNSAIESAIDRVGSEEHELSRRAKDLGSAAVLMGILLCLALWTATIYNNIRLFN</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="82" xmlns="http://uniprot.org/uniprot">
    <accession>A9BT56</accession>
    <name>A9BT56_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Transcriptional regulator, LysR family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Daci_1981</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="4" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the LysR transcriptional regulatory family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX34621.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_1981"/>
    <dbReference type="PRIDE" id="A9BT56"/>
    <dbReference type="EnsemblBacteria" id="ABX34621">
        <property type="protein sequence ID" value="ABX34621"/>
        <property type="gene ID" value="Daci_1981"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_1981"/>
    <dbReference type="eggNOG" id="COG0583">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_039613_37_2_4"/>
    <dbReference type="OMA" id="EPPWPAD"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003700">
        <property type="term" value="F:DNA-binding transcription factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005119">
        <property type="entry name" value="LysR_subst-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000847">
        <property type="entry name" value="Tscrpt_reg_HTH_LysR"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036390">
        <property type="entry name" value="WH_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00126">
        <property type="entry name" value="HTH_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03466">
        <property type="entry name" value="LysR_substrate"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00039">
        <property type="entry name" value="HTHLYSR"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46785">
        <property type="entry name" value="SSF46785"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50931">
        <property type="entry name" value="HTH_LYSR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HTH lysR-type" evidence="2">
        <location>
            <begin position="20"/>
            <end position="77"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00009437"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS50931"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ABX34621.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="312" mass="33463" checksum="5009FA686F138E48" modified="2008-01-15" version="1">MCPMCPMPPSSPMAPPTHMPPLSALRAFEATVRHGSVSKAARELHLTDGAVSRAVRDMEEALGFALFQRSNRSIIATPTARVLAEEVALALERLRGALGRARQAAGPDRPLVLSCEPTFLMRWLIPRLGGLQEAIGTQRELRLVSAGGSVPFAREGIDLAIRRADFDLGADVVAEPFLQEHVGPVCRPALAKTLARSGPLGGVLLHTASRPDAWRHWSELTGVPLQPGREARFEHFYLSLQAAVAGAGIAIGPLALVADDLASGTLCAPRGFVADGSHYVLMSPRPVHDEARFALVLEWLRTQTLPLARADA</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="92" xmlns="http://uniprot.org/uniprot">
    <accession>A9BT98</accession>
    <name>A9BT98_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="4">Transcription elongation factor GreB</fullName>
        </recommendedName>
        <alternativeName>
            <fullName evidence="4">Transcript cleavage factor GreB</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="4" type="primary">greB</name>
        <name evidence="8" type="ordered locus">Daci_2023</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="9" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="4">Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus. GreB releases sequences of up to 9 nucleotides in length.</text>
    </comment>
    <comment type="similarity">
        <text evidence="4">Belongs to the GreA/GreB family. GreB subfamily.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX34663.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012203948.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_2023"/>
    <dbReference type="PRIDE" id="A9BT98"/>
    <dbReference type="EnsemblBacteria" id="ABX34663">
        <property type="protein sequence ID" value="ABX34663"/>
        <property type="gene ID" value="Daci_2023"/>
    </dbReference>
    <dbReference type="GeneID" id="60686423"/>
    <dbReference type="KEGG" id="dac:Daci_2023"/>
    <dbReference type="eggNOG" id="COG0782">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_101379_3_0_4"/>
    <dbReference type="OMA" id="DQIFFGA"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0070063">
        <property type="term" value="F:RNA polymerase binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003746">
        <property type="term" value="F:translation elongation factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0032784">
        <property type="term" value="P:regulation of DNA-templated transcription, elongation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.287.180">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.10.50.30">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00105">
        <property type="entry name" value="GreA_GreB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00930">
        <property type="entry name" value="GreB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036953">
        <property type="entry name" value="GreA/GreB_C_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018151">
        <property type="entry name" value="TF_GreA/GreB_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR028624">
        <property type="entry name" value="Tscrpt_elong_fac_GreA/B"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001437">
        <property type="entry name" value="Tscrpt_elong_fac_GreA/B_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023459">
        <property type="entry name" value="Tscrpt_elong_fac_GreA/B_fam"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR022691">
        <property type="entry name" value="Tscrpt_elong_fac_GreA/B_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036805">
        <property type="entry name" value="Tscrpt_elong_fac_GreA/B_N_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006358">
        <property type="entry name" value="Tscrpt_elong_fac_GreB"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30437">
        <property type="entry name" value="PTHR30437"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01272">
        <property type="entry name" value="GreA_GreB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03449">
        <property type="entry name" value="GreA_GreB_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF006092">
        <property type="entry name" value="GreA_GreB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46557">
        <property type="entry name" value="SSF46557"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01461">
        <property type="entry name" value="greB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00829">
        <property type="entry name" value="GREAB_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2 4" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="8" id="KW-0251">Elongation factor</keyword>
    <keyword evidence="8" id="KW-0648">Protein biosynthesis</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 4" id="KW-0804">Transcription</keyword>
    <keyword evidence="1 4" id="KW-0805">Transcription regulation</keyword>
    <feature type="domain" description="GreA_GreB_N" evidence="7">
        <location>
            <begin position="28"/>
            <end position="98"/>
        </location>
    </feature>
    <feature type="domain" description="GreA_GreB" evidence="6">
        <location>
            <begin position="108"/>
            <end position="180"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="5">
        <location>
            <begin position="1"/>
            <end position="30"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023015"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023163"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00930"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="Pfam" id="PF01272"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="Pfam" id="PF03449"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="ABX34663.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="188" mass="20796" checksum="D8E12BE84B35EDBE" modified="2008-01-15" version="1">MSKAFTKESDGDDDDEVGLPPLPPGGKNYITPQGFERLKTELLDLIDNERPRIVEIVHWAASNGDRSENGDYLYGKKRLREIDRRIRFLTKRLEIAEVVDPSVHAGSEQIYFGATVTYVDDEGEERTITIMGIDEADSARQQVSWIAPVSRALLKARVGDEVALPTPAGVRTLEVLEVTYPEPGSAAG</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="47" xmlns="http://uniprot.org/uniprot">
    <accession>A9BTM8</accession>
    <name>A9BTM8_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Daci_2358</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="2" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX34996.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012204278.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_2358"/>
    <dbReference type="PRIDE" id="A9BTM8"/>
    <dbReference type="EnsemblBacteria" id="ABX34996">
        <property type="protein sequence ID" value="ABX34996"/>
        <property type="gene ID" value="Daci_2358"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_2358"/>
    <dbReference type="eggNOG" id="COG0745">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_056502_0_0_4"/>
    <dbReference type="OMA" id="RRWMTPP"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ABX34996.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="414" mass="42690" checksum="15DB79C003915F61" modified="2008-01-15" version="1">MDSLITAAARALAVGDPLGALNRVALRDDAPALALRGIAMAQLGDLVRARALLRSAARAFGSHEAVARARCVVAEAEIALALRELAWPARRLVAARAVLQAHGDPVNAAHAGYLEVRRCLLLGRLGEAEGLLGGLRPALLPAALQAFHALALAGIAMRRLDIRAAHSALADAAQAAGAAGIAALAAEVGQAAQALHAPAAVLLEREPAGSQAQKLLSLDEAGTLLASGALVVDACRHAVRAGAVAVSLAGRPVLFALARALGEAWPGDVSREALVAQVFRARQADDSYRARLRVEIGRLRRLLRPLAEVHATPLGFVLAPRQARVAVLARPVEGAPGVLCGPVLALLSDGEAWASSALALALGASQRSVQRTLEALERDALAQPVGRGRARRWVARPAPGFTTTLLLPAVLPAG</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="67" xmlns="http://uniprot.org/uniprot">
    <accession>A9BTN2</accession>
    <name>A9BTN2_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="1">GatB/YqeY domain protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Daci_2362</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="2" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX35000.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012204282.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_2362"/>
    <dbReference type="PRIDE" id="A9BTN2"/>
    <dbReference type="EnsemblBacteria" id="ABX35000">
        <property type="protein sequence ID" value="ABX35000"/>
        <property type="gene ID" value="Daci_2362"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_2362"/>
    <dbReference type="eggNOG" id="COG1610">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_079430_2_2_4"/>
    <dbReference type="OMA" id="AMGAVMK"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016884">
        <property type="term" value="F:carbon-nitrogen ligase activity, with glutamine as amido-N-donor"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.410">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.1510.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003789">
        <property type="entry name" value="Asn/Gln_tRNA_amidoTrase-B-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023168">
        <property type="entry name" value="GatB_Yqey_C_2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019004">
        <property type="entry name" value="YqeY/Aim41"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR042184">
        <property type="entry name" value="YqeY/Aim41_N"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR28055">
        <property type="entry name" value="PTHR28055"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF09424">
        <property type="entry name" value="YqeY"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF89095">
        <property type="entry name" value="SSF89095"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ABX35000.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="148" mass="15486" checksum="A9CDD8ABBCC8BF2F" modified="2008-01-15" version="1">MSLKAQITEDMKTAMRAKDSERLGTIRLLLAAMKQKEVDERVELDDAAVIAIVDKLIKQRKDSIAAFEGAGRQDLADKEKAEMAVLTAYLPARMSAEEVATAVKAIVAELGASGPGDMGKVMGAVKAQLAGKADMGQVSAAVKAALAG</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="74" xmlns="http://uniprot.org/uniprot">
    <accession>A9BU34</accession>
    <name>A9BU34_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="7">Putative nickel-responsive regulator</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="10" type="ordered locus">Daci_3111</name>
    </gene>
    <organism evidence="10 11">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="10 11" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="11">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="11" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="11">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="7">Transcriptional regulator.</text>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="7">
            <name>Ni(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:49786"/>
        </cofactor>
        <text evidence="7">Binds 1 nickel ion per subunit.</text>
    </comment>
    <comment type="similarity">
        <text evidence="1 7">Belongs to the transcriptional regulatory CopG/NikR family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX35749.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_3111"/>
    <dbReference type="PRIDE" id="A9BU34"/>
    <dbReference type="EnsemblBacteria" id="ABX35749">
        <property type="protein sequence ID" value="ABX35749"/>
        <property type="gene ID" value="Daci_3111"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_3111"/>
    <dbReference type="eggNOG" id="COG0864">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_113319_1_4_4"/>
    <dbReference type="OMA" id="AHNCLET"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003700">
        <property type="term" value="F:DNA-binding transcription factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016151">
        <property type="term" value="F:nickel cation binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0010045">
        <property type="term" value="P:response to nickel cation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.1220.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.70.1150">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00476">
        <property type="entry name" value="NikR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027271">
        <property type="entry name" value="Acetolactate_synth/TF_NikR_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045865">
        <property type="entry name" value="ACT-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013321">
        <property type="entry name" value="Arc_rbn_hlx_hlx"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002145">
        <property type="entry name" value="CopG"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR022988">
        <property type="entry name" value="Ni_resp_reg_NikR"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010985">
        <property type="entry name" value="Ribbon_hlx_hlx"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014864">
        <property type="entry name" value="TF_NikR_Ni-bd_C"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08753">
        <property type="entry name" value="NikR_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01402">
        <property type="entry name" value="RHH_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47598">
        <property type="entry name" value="SSF47598"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55021">
        <property type="entry name" value="SSF55021"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5 7" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="3 7" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="2 7" id="KW-0533">Nickel</keyword>
    <keyword evidence="11" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="6 7" id="KW-0804">Transcription</keyword>
    <keyword evidence="4 7" id="KW-0805">Transcription regulation</keyword>
    <feature type="domain" description="RHH_1" evidence="8">
        <location>
            <begin position="15"/>
            <end position="54"/>
        </location>
    </feature>
    <feature type="domain" description="NikR_C" evidence="9">
        <location>
            <begin position="66"/>
            <end position="141"/>
        </location>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <position position="89"/>
        </location>
        <ligand>
            <name>Ni(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:49786"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <position position="100"/>
        </location>
        <ligand>
            <name>Ni(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:49786"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <position position="102"/>
        </location>
        <ligand>
            <name>Ni(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:49786"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <position position="108"/>
        </location>
        <ligand>
            <name>Ni(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:49786"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00008478"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022596"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023015"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023163"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00476"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="Pfam" id="PF01402"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="9">
        <source>
            <dbReference type="Pfam" id="PF08753"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="EMBL" id="ABX35749.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="164" mass="18692" checksum="98B8BED619B6B8FC" modified="2008-01-15" version="1">MFPPPVSPLLLPMERFTISIDDDLARDFDGWIAARGYDNRSEAIRDVLRAHLAQVREREDADGLCVANLSYVYNHHERDLSERLASLQHDHHELHMATTHVHLDHEQCIETVMLRGPASAVRRFADTITAERGVHHGQLNVVMARRAEPGGHDHAHHHPHSHDD</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2020-12-02" version="71" xmlns="http://uniprot.org/uniprot">
    <accession>A9BU45</accession>
    <name>A9BU45_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="6">Binding-protein-dependent transport systems inner membrane component</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ordered locus">Daci_3122</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="7" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="4">Cell membrane</location>
            <topology evidence="4">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="4">Belongs to the binding-protein-dependent transport system permease family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX35760.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_3122"/>
    <dbReference type="EnsemblBacteria" id="ABX35760">
        <property type="protein sequence ID" value="ABX35760"/>
        <property type="gene ID" value="Daci_3122"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_3122"/>
    <dbReference type="eggNOG" id="COG1177">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_016047_3_4_4"/>
    <dbReference type="OMA" id="FRRSWLF"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0055085">
        <property type="term" value="P:transmembrane transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd06261">
        <property type="entry name" value="TM_PBP2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.3720.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000515">
        <property type="entry name" value="MetI-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035906">
        <property type="entry name" value="MetI-like_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00528">
        <property type="entry name" value="BPD_transp_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF161098">
        <property type="entry name" value="SSF161098"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50928">
        <property type="entry name" value="ABC_TM1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3 4" id="KW-0472">Membrane</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1 4" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="2 4" id="KW-1133">Transmembrane helix</keyword>
    <keyword evidence="4" id="KW-0813">Transport</keyword>
    <feature type="transmembrane region" description="Helical" evidence="4">
        <location>
            <begin position="39"/>
            <end position="64"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="4">
        <location>
            <begin position="84"/>
            <end position="117"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="4">
        <location>
            <begin position="129"/>
            <end position="150"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="4">
        <location>
            <begin position="156"/>
            <end position="176"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="4">
        <location>
            <begin position="206"/>
            <end position="228"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="4">
        <location>
            <begin position="265"/>
            <end position="288"/>
        </location>
    </feature>
    <feature type="domain" description="ABC transmembrane type-1" evidence="5">
        <location>
            <begin position="91"/>
            <end position="281"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="RuleBase" id="RU363032"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="PROSITE" id="PS50928"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="ABX35760.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="294" mass="31641" checksum="80FB9F471B2B2EFF" modified="2008-01-15" version="1">MRTTQKNSPHAALAAQGPLPPEGAAFCLGAARRPKMPPLMWLVTATVTVFMLAPMLLSVLAGLVQNYGQGLASGLTTRWLAEVWAGYGNTVLMSLLLACACVAMTLVLGVPCAYALARSRSPWARHFEELLTLPVAIPGLASALALLLAYGSVAAFRQSFAFILVGHVVFTLPFMVRMVGSALRRQELVALEEAARSLGASFTQRFLGVLVPAVLPAIVAACLMVFTLSMGEFNLTWMLHTPLTRTLPVGLADSYASMRIEVGSAYTLIFLIVILPVMWLLQALGHFIEKHYGK</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="65" xmlns="http://uniprot.org/uniprot">
    <accession>A9BU51</accession>
    <name>A9BU51_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="9">Intradiol ring-cleavage dioxygenase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="9" type="ordered locus">Daci_3128</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="9 10" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="10" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>Fe(3+)</name>
            <dbReference type="ChEBI" id="CHEBI:29034"/>
        </cofactor>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the intradiol ring-cleavage dioxygenase family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX35766.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012204967.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_3128"/>
    <dbReference type="PRIDE" id="A9BU51"/>
    <dbReference type="EnsemblBacteria" id="ABX35766">
        <property type="protein sequence ID" value="ABX35766"/>
        <property type="gene ID" value="Daci_3128"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_3128"/>
    <dbReference type="eggNOG" id="COG3485">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_046727_1_1_4"/>
    <dbReference type="OMA" id="GPFWRLN"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0018576">
        <property type="term" value="F:catechol 1,2-dioxygenase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008199">
        <property type="term" value="F:ferric iron binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009712">
        <property type="term" value="P:catechol-containing compound metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.130.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007535">
        <property type="entry name" value="Catechol_dOase_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000627">
        <property type="entry name" value="Intradiol_dOase_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015889">
        <property type="entry name" value="Intradiol_dOase_core"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00775">
        <property type="entry name" value="Dioxygenase_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04444">
        <property type="entry name" value="Dioxygenase_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF49482">
        <property type="entry name" value="SSF49482"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4 9" id="KW-0223">Dioxygenase</keyword>
    <keyword evidence="6" id="KW-0408">Iron</keyword>
    <keyword evidence="3" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="5" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Dioxygenase_N" evidence="8">
        <location>
            <begin position="22"/>
            <end position="91"/>
        </location>
    </feature>
    <feature type="domain" description="INTRADIOL_DIOXYGENAS" evidence="7">
        <location>
            <begin position="103"/>
            <end position="283"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001965"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00007825"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022964"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023002"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023004"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="Pfam" id="PF00775"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="Pfam" id="PF04444"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="ABX35766.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="317" mass="34746" checksum="69BC13708766488F" modified="2008-01-15" version="1">MIIEKQSDVTAAVLEQLQQSSDPRFKEIMIAAVTHLHGFIRDARLSEAEFHQACALIARLGQLTTASHNEVVLIAGSLGVSALVCLLNNGDNGQTETTANLMGPFWRMDSPPTENGGSIVRSPTPGMPVFVNAWVRDRQGRPVPDAEVDVWHASSEGFYENQDPEQADMNLRGKFRTDAAGCITFRTIKPVGYPIPLSGPVGALLRAQGRHNMRPAHIHFMVYKPGFKTQFAQVYSSDDPHLETDVQFGVTRALIGQYVLHSGESPPADDVHGAWYTLDHHFVIEPGEARLPKPPITGKAGGERPTLTVLERCTDTH</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="55" xmlns="http://uniprot.org/uniprot">
    <accession>A9BU86</accession>
    <name>A9BU86_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ordered locus">Daci_3163</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="5" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Periplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the UPF0065 (bug) family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX35801.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012205002.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_3163"/>
    <dbReference type="PRIDE" id="A9BU86"/>
    <dbReference type="EnsemblBacteria" id="ABX35801">
        <property type="protein sequence ID" value="ABX35801"/>
        <property type="gene ID" value="Daci_3163"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_3163"/>
    <dbReference type="eggNOG" id="COG3181">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_045683_0_0_4"/>
    <dbReference type="OMA" id="SHMMGEL"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0042597">
        <property type="term" value="C:periplasmic space"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.190.150">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005064">
        <property type="entry name" value="BUG"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR042100">
        <property type="entry name" value="Bug_dom1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006311">
        <property type="entry name" value="TAT_signal"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR42928">
        <property type="entry name" value="PTHR42928"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03401">
        <property type="entry name" value="TctC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF017082">
        <property type="entry name" value="YflP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51318">
        <property type="entry name" value="TAT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="3">
        <location>
            <begin position="1"/>
            <end position="31"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5002735100" evidence="3">
        <location>
            <begin position="32"/>
            <end position="334"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004418"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00006987"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="ABX35801.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="334" mass="34677" checksum="3BAE47A2B330D579" modified="2008-01-15" version="1">MQRRNFMIRSLSATTAALALGALAPAQSALAADAGWPTAEPIRLIVPFPPGGTADVVNRLFAQQLGKVLGASVIVENKAGAGGSLGTRFVADAKPDGYTLLGATSSTHGTNPAVYTKLPYDAVKDFTPITQVITVPGVLSVHPSVKAANLKELIALAKAQPGHLSYASSGAGGLGHLAMELFKAKAGVQIMHVPYRGAGPAFTDLIGGQVSMLWEPLPASLPHIKSGKIRPLAVATAQRSSELPDVPTFAESGVPGYAVQAWNGLLAPKGLPKDIRDKLHKASVQALADPQLRQRLAELGGTVVANTPEQFGAVILKDVTTWKQVASSSQISLD</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="78" xmlns="http://uniprot.org/uniprot">
    <accession>A9BUP0</accession>
    <name>A9BUP0_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Histidine kinase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Daci_1504</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="4" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX34148.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012203434.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_1504"/>
    <dbReference type="PRIDE" id="A9BUP0"/>
    <dbReference type="EnsemblBacteria" id="ABX34148">
        <property type="protein sequence ID" value="ABX34148"/>
        <property type="gene ID" value="Daci_1504"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_1504"/>
    <dbReference type="eggNOG" id="COG2205">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_000445_114_39_4"/>
    <dbReference type="OMA" id="ICRELCQ"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000155">
        <property type="term" value="F:phosphorelay sensor kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd00082">
        <property type="entry name" value="HisKA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.565.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003594">
        <property type="entry name" value="HATPase_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036890">
        <property type="entry name" value="HATPase_C_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005467">
        <property type="entry name" value="His_kinase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003661">
        <property type="entry name" value="HisK_dim/P"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036097">
        <property type="entry name" value="HisK_dim/P_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000014">
        <property type="entry name" value="PAS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035965">
        <property type="entry name" value="PAS-like_dom_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02518">
        <property type="entry name" value="HATPase_c"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00512">
        <property type="entry name" value="HisKA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13188">
        <property type="entry name" value="PAS_8"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00387">
        <property type="entry name" value="HATPase_c"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00388">
        <property type="entry name" value="HisKA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47384">
        <property type="entry name" value="SSF47384"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55785">
        <property type="entry name" value="SSF55785"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55874">
        <property type="entry name" value="SSF55874"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50109">
        <property type="entry name" value="HIS_KIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-0418">Kinase</keyword>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0808">Transferase</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="35"/>
            <end position="55"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="62"/>
            <end position="81"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="93"/>
            <end position="111"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="123"/>
            <end position="155"/>
        </location>
    </feature>
    <feature type="domain" description="Histidine kinase" evidence="2">
        <location>
            <begin position="352"/>
            <end position="573"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS50109"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ABX34148.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="587" mass="63890" checksum="626034CAE3154BD1" modified="2008-01-15" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="100" xmlns="http://uniprot.org/uniprot">
    <accession>A9BUW1</accession>
    <name>A9BUW1_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="11">ABC transporter related</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="11" type="ordered locus">Daci_1781</name>
    </gene>
    <organism evidence="11 12">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="11 12" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="12">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="12" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="12">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX34423.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012203708.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_1781"/>
    <dbReference type="PRIDE" id="A9BUW1"/>
    <dbReference type="EnsemblBacteria" id="ABX34423">
        <property type="protein sequence ID" value="ABX34423"/>
        <property type="gene ID" value="Daci_1781"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_1781"/>
    <dbReference type="eggNOG" id="COG1135">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_000604_1_3_4"/>
    <dbReference type="OMA" id="HIQNQPV"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0033232">
        <property type="term" value="F:ABC-type D-methionine transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd03258">
        <property type="entry name" value="ABC_MetN_methionine_transporter"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003593">
        <property type="entry name" value="AAA+_ATPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR026253">
        <property type="entry name" value="ABC_MetN"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003439">
        <property type="entry name" value="ABC_transporter-like_ATP-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017871">
        <property type="entry name" value="ABC_transporter-like_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045865">
        <property type="entry name" value="ACT-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041701">
        <property type="entry name" value="MetN_ABC"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018449">
        <property type="entry name" value="NIL_domain"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43166:SF5">
        <property type="entry name" value="PTHR43166:SF5"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00005">
        <property type="entry name" value="ABC_tran"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF09383">
        <property type="entry name" value="NIL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00382">
        <property type="entry name" value="AAA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00930">
        <property type="entry name" value="NIL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55021">
        <property type="entry name" value="SSF55021"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00211">
        <property type="entry name" value="ABC_TRANSPORTER_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50893">
        <property type="entry name" value="ABC_TRANSPORTER_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="6" id="KW-0029">Amino-acid transport</keyword>
    <keyword evidence="4 8" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="2" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="7" id="KW-0472">Membrane</keyword>
    <keyword evidence="3 8" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="12" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="5" id="KW-1278">Translocase</keyword>
    <keyword evidence="1" id="KW-0813">Transport</keyword>
    <feature type="domain" description="ABC transporter" evidence="10">
        <location>
            <begin position="47"/>
            <end position="286"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="9">
        <location>
            <begin position="1"/>
            <end position="40"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="9">
        <location>
            <begin position="13"/>
            <end position="27"/>
        </location>
    </feature>
    <feature type="binding site" evidence="8">
        <location>
            <begin position="83"/>
            <end position="90"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022448"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022967"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022970"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00434"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="10">
        <source>
            <dbReference type="PROSITE" id="PS50893"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="EMBL" id="ABX34423.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="397" mass="42499" checksum="3B162DE43C07BD46" modified="2008-01-15" version="1">MSTSIAARQPLADRPAHEADRPAHDAGRRSSAAAGTTRESIRGPGAVAFSGVAKTYQSSAGPVQALDAISLEIAPGSIFGIIGRSGAGKSSLLRTINRLEQPSSGQVRVDGVDIGTLDESQLVQLRRRIGMIFQHFNLLSAKTVHDNVALPLQVAGLPRARIDARVKELLALVGLQEKAGTYPSRLSGGQKQRVGIARALATDPEILLCDEATSALDPETTQSILELLRTINRKLGITIVLITHEMSVIREIADRVLVLEQGRIAELGEVWKVFGNPQHPATRALLAPLQHGLPDDLRQRLLPDAPAGRHERILQLTYRGEDGLEPDFPRIAQALGGRVRLLHGGVDRIQGHAQGQLLIALGGGTAAHDWHTLTQGPAAIAHDIKDLGYVAESVHSH</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="58" xmlns="http://uniprot.org/uniprot">
    <accession>A9BV27</accession>
    <name>A9BV27_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Isochorismatase hydrolase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_1849</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX34489.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012203774.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_1849"/>
    <dbReference type="PRIDE" id="A9BV27"/>
    <dbReference type="EnsemblBacteria" id="ABX34489">
        <property type="protein sequence ID" value="ABX34489"/>
        <property type="gene ID" value="Daci_1849"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_1849"/>
    <dbReference type="eggNOG" id="COG1335">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_068979_7_1_4"/>
    <dbReference type="OMA" id="DVCNAYW"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016787">
        <property type="term" value="F:hydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.850">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000868">
        <property type="entry name" value="Isochorismatase-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036380">
        <property type="entry name" value="Isochorismatase-like_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00857">
        <property type="entry name" value="Isochorismatase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52499">
        <property type="entry name" value="SSF52499"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Isochorismatase" evidence="1">
        <location>
            <begin position="46"/>
            <end position="216"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF00857"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX34489.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="231" mass="24127" checksum="790B3BFE39BC7A29" modified="2008-01-15" version="1">MTTATATTSTQSVPTEGVQGDISADISVYARQGFGTPLPLKAPFGLLIIDFVNGFADPAVFGGGNIPEAIAQTQHLLAHARERGWPVAHSRIVFSDDDADHNIFCLKVPGMLTLKEDSPNSAIVPQLAPAAGEYVVRKSTPSAFFGTMLAPWLAQRGVQTLLVAGCVTSGCVRASVVDAMQSGFRPLVVADCCGDRALGPHEANLFDMAQKYAAVMPLSQAIADTDALAAG</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="76" xmlns="http://uniprot.org/uniprot">
    <accession>A9BV37</accession>
    <name>A9BV37_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Transcriptional regulator, MarR family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_1859</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX34499.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012203784.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_1859"/>
    <dbReference type="PRIDE" id="A9BV37"/>
    <dbReference type="EnsemblBacteria" id="ABX34499">
        <property type="protein sequence ID" value="ABX34499"/>
        <property type="gene ID" value="Daci_1859"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_1859"/>
    <dbReference type="eggNOG" id="COG1846">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_083287_4_0_4"/>
    <dbReference type="OMA" id="FTEQVGH"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003700">
        <property type="term" value="F:DNA-binding transcription factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000835">
        <property type="entry name" value="HTH_MarR-typ"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036390">
        <property type="entry name" value="WH_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01047">
        <property type="entry name" value="MarR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00347">
        <property type="entry name" value="HTH_MARR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46785">
        <property type="entry name" value="SSF46785"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50995">
        <property type="entry name" value="HTH_MARR_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HTH marR-type" evidence="1">
        <location>
            <begin position="17"/>
            <end position="149"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS50995"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX34499.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="154" mass="17403" checksum="EF56C48A01432115" modified="2008-01-15" version="1">MNHPPSAMTPQDGYHFSDQIGHLLRRVYQRHTALFQQYIPDSQLTAAQFVVLCSVRDNSGSSLADIVKATVIDQATIRGVVDRLKQRELVQVDHDRIDRRKVVINLTEAGQDLVRDMEPFAKQITESTYGKLNPAERLALDFLLKKMLEGGEAD</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="82" xmlns="http://uniprot.org/uniprot">
    <accession>A9BV92</accession>
    <name>A9BV92_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Transcriptional regulator, LysR family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Daci_2116</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="4" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the LysR transcriptional regulatory family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX34756.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012204039.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_2116"/>
    <dbReference type="PRIDE" id="A9BV92"/>
    <dbReference type="EnsemblBacteria" id="ABX34756">
        <property type="protein sequence ID" value="ABX34756"/>
        <property type="gene ID" value="Daci_2116"/>
    </dbReference>
    <dbReference type="GeneID" id="60686514"/>
    <dbReference type="KEGG" id="dac:Daci_2116"/>
    <dbReference type="eggNOG" id="COG0583">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_039613_16_2_4"/>
    <dbReference type="OMA" id="VYPQRKY"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003700">
        <property type="term" value="F:DNA-binding transcription factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005119">
        <property type="entry name" value="LysR_subst-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000847">
        <property type="entry name" value="Tscrpt_reg_HTH_LysR"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036390">
        <property type="entry name" value="WH_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00126">
        <property type="entry name" value="HTH_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03466">
        <property type="entry name" value="LysR_substrate"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46785">
        <property type="entry name" value="SSF46785"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50931">
        <property type="entry name" value="HTH_LYSR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HTH lysR-type" evidence="2">
        <location>
            <begin position="1"/>
            <end position="59"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00009437"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS50931"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ABX34756.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="305" mass="33853" checksum="CB198293D890C503" modified="2008-01-15" version="1">MDRLDAMHMFVRVVETSSFTKVAHEFATTQPTVTKQIAAMEARLKVRLLNRNTRGVSLTEAGALYYEKCKTIVNDVAEADKVVQVRQTQVQGQLRIGSSVAFGRRVLIPLALEFMAHNPQVQVDLSFEDRYTDLVANGIDVALRLGKLADSSLGARTLGVNPWVLVASPTYLRKRGTPRRPSDLKEHATLIYSSVQGNDIWRLRNASGEPVSVAVTGRLRSNNLSALLAASRSHMGIAALPRYVAHDSLEAGRVVEVLKTCRLPEQEIHAVYPSPRLVPQKVQSFIAFLQGRFDAEWWETLPRGA</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="68" xmlns="http://uniprot.org/uniprot">
    <accession>A9BVC8</accession>
    <name>A9BVC8_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Ornithine cyclodeaminase/mu-crystallin</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Daci_2152</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="2" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX34792.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012204075.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_2152"/>
    <dbReference type="PRIDE" id="A9BVC8"/>
    <dbReference type="EnsemblBacteria" id="ABX34792">
        <property type="protein sequence ID" value="ABX34792"/>
        <property type="gene ID" value="Daci_2152"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_2152"/>
    <dbReference type="eggNOG" id="COG2423">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_042088_1_2_4"/>
    <dbReference type="OMA" id="QARWQTR"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.1780.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036291">
        <property type="entry name" value="NAD(P)-bd_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003462">
        <property type="entry name" value="ODC_Mu_crystall"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023401">
        <property type="entry name" value="ODC_N"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR13812">
        <property type="entry name" value="PTHR13812"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02423">
        <property type="entry name" value="OCD_Mu_crystall"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF001439">
        <property type="entry name" value="CryM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51735">
        <property type="entry name" value="SSF51735"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ABX34792.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="315" mass="32666" checksum="87035D8249E6DD2A" modified="2008-01-15" version="1">MSHSSMPSSTALDAQATAGLLPWNELAEEIAAVLLQPQAAQVPARIVMPLPAGGSLFCMPATDGQVAMTKLISFTPGNAGTPRATIQGDVVVFDVATGERRLILDGPTVTARRTAAVSLLAAQRLAPNPQGPLLIVGAGVQGLAHLQAFAAGLGVREVQVASRSAQSAQALVDQARAMGLQATTVEDVEAAARHCPLIVTCTPARGVVLREAPRSDAFISAVGAFTPQMVELAPGLCQGLLQSGRVVVDTGDALHEAGDLLQAGIDVAALPTLEQVVREQWPRSNLPVLFKCCGWGGWDLAATRLAMRRAALQNS</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="75" xmlns="http://uniprot.org/uniprot">
    <accession>A9BVH5</accession>
    <name>A9BVH5_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Transcriptional regulator, LysR family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Daci_2404</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="4" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the LysR transcriptional regulatory family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX35042.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_2404"/>
    <dbReference type="PRIDE" id="A9BVH5"/>
    <dbReference type="EnsemblBacteria" id="ABX35042">
        <property type="protein sequence ID" value="ABX35042"/>
        <property type="gene ID" value="Daci_2404"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_2404"/>
    <dbReference type="eggNOG" id="COG0583">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_039613_6_5_4"/>
    <dbReference type="OMA" id="FMDMRFL"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003700">
        <property type="term" value="F:DNA-binding transcription factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005119">
        <property type="entry name" value="LysR_subst-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000847">
        <property type="entry name" value="Tscrpt_reg_HTH_LysR"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036390">
        <property type="entry name" value="WH_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00126">
        <property type="entry name" value="HTH_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03466">
        <property type="entry name" value="LysR_substrate"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46785">
        <property type="entry name" value="SSF46785"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50931">
        <property type="entry name" value="HTH_LYSR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HTH lysR-type" evidence="2">
        <location>
            <begin position="4"/>
            <end position="61"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00009437"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS50931"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ABX35042.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="291" mass="31928" checksum="10CAB938B3CA8BD5" modified="2008-01-15" version="1">MRRMDSRFLQSFIAVVDCGSMADAARRLDLPPTTVAQQMRALEADVGCALLTRVGRTVRPTVVGARIVEHAREVLKSVENLRSAASATELPAGPLRLGATPTALMGLVPPLLRRWMSAHPAVRVYIEPGTSSLLLDQVQAGHLDAAILVHPAFAMPKTCEWRLMRSEALILLAPRDMKVRDPVLTAAREPFIQYDRKVVAGKMADEYLRGHGIKPKVRFELDGIEQIAQLVAEGFGVSILPDWPVLGPPDARTRRWPLPPPSPSREVGIVWLRSSVRSPLAAALSELIDSR</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="62" xmlns="http://uniprot.org/uniprot">
    <accession>A9BVV4</accession>
    <name>A9BVV4_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Putative transcriptional regulator, GntR family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_2829</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX35467.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012204677.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_2829"/>
    <dbReference type="PRIDE" id="A9BVV4"/>
    <dbReference type="EnsemblBacteria" id="ABX35467">
        <property type="protein sequence ID" value="ABX35467"/>
        <property type="gene ID" value="Daci_2829"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_2829"/>
    <dbReference type="eggNOG" id="COG1167">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_017584_0_6_4"/>
    <dbReference type="OMA" id="TMCKQFS"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003824">
        <property type="term" value="F:catalytic activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030170">
        <property type="term" value="F:pyridoxal phosphate binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009058">
        <property type="term" value="P:biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.640.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.1150.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004839">
        <property type="entry name" value="Aminotransferase_I/II"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015424">
        <property type="entry name" value="PyrdxlP-dep_Trfase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015421">
        <property type="entry name" value="PyrdxlP-dep_Trfase_major"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015422">
        <property type="entry name" value="PyrdxlP-dep_Trfase_small"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00155">
        <property type="entry name" value="Aminotran_1_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53383">
        <property type="entry name" value="SSF53383"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Aminotran_1_2" evidence="1">
        <location>
            <begin position="48"/>
            <end position="392"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF00155"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX35467.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="398" mass="42397" checksum="02303ED61FDD1362" modified="2008-01-15" version="1">MQFADRLNNVETSAIRELFKLLGKPGIISFAGGFPDSAMFDVAGISAASQAALQQEPGAALQYGATEGYQPLREQIAAFMAAKGVRELAPEQLVVTTGSQQALDLLGKTMINPGDKVIVEGPTFLATIQCFRLYGAEVISAPIDAEGAQVDALEQLIAEHRPKLVYLIPTFGNPSGAMLSLERRKKVLELAVKYQTLVVEDDPYGDLYFGEAPPPSLLALSSQVPGSRDWLAHCGSLSKVLSPGLRIGWLVAPAELLGRAVMCKQFSDAHTSTFAQATAAQYLKSGAMPATLAHVREVYARRAKAMGDALREHLGDAVEFLQPQGGLFLWVRLTGKGGALADAGELAKRAIAQGVAFVPGAPFFAQNPDATSFRLSFATADEDKIREGIARLAQALKA</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="77" xmlns="http://uniprot.org/uniprot">
    <accession>A9BVY1</accession>
    <name>A9BVY1_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="6">(P)ppGpp synthetase I, SpoT/RelA</fullName>
            <ecNumber evidence="6">2.7.6.5</ecNumber>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ordered locus">Daci_2856</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="7" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="3">In eubacteria ppGpp (guanosine 3'-diphosphate 5'-diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance.</text>
    </comment>
    <comment type="similarity">
        <text evidence="3">Belongs to the relA/spoT family.</text>
    </comment>
    <dbReference type="EC" id="2.7.6.5" evidence="6"/>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX35494.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012204704.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_2856"/>
    <dbReference type="PRIDE" id="A9BVY1"/>
    <dbReference type="EnsemblBacteria" id="ABX35494">
        <property type="protein sequence ID" value="ABX35494"/>
        <property type="gene ID" value="Daci_2856"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_2856"/>
    <dbReference type="eggNOG" id="COG0317">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_012300_3_0_4"/>
    <dbReference type="OMA" id="TEIGHNC"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008728">
        <property type="term" value="F:GTP diphosphokinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016779">
        <property type="term" value="F:nucleotidyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015969">
        <property type="term" value="P:guanosine tetraphosphate metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd05399">
        <property type="entry name" value="NT_Rel-Spo_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="CDD" id="cd01668">
        <property type="entry name" value="TGS_RSH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.10.20.30">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.460.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045865">
        <property type="entry name" value="ACT-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002912">
        <property type="entry name" value="ACT_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012675">
        <property type="entry name" value="Beta-grasp_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043519">
        <property type="entry name" value="NT_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004811">
        <property type="entry name" value="RelA/Spo_fam"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007685">
        <property type="entry name" value="RelA_SpoT"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004095">
        <property type="entry name" value="TGS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012676">
        <property type="entry name" value="TGS-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR033655">
        <property type="entry name" value="TGS_RelA/SpoT"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13291">
        <property type="entry name" value="ACT_4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04607">
        <property type="entry name" value="RelA_SpoT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02824">
        <property type="entry name" value="TGS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00954">
        <property type="entry name" value="RelA_SpoT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55021">
        <property type="entry name" value="SSF55021"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF81271">
        <property type="entry name" value="SSF81271"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF81301">
        <property type="entry name" value="SSF81301"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00691">
        <property type="entry name" value="spoT_relA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51671">
        <property type="entry name" value="ACT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51880">
        <property type="entry name" value="TGS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2" id="KW-0460">Magnesium</keyword>
    <keyword evidence="1" id="KW-0548">Nucleotidyltransferase</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="6" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="TGS" evidence="5">
        <location>
            <begin position="419"/>
            <end position="480"/>
        </location>
    </feature>
    <feature type="domain" description="ACT" evidence="4">
        <location>
            <begin position="678"/>
            <end position="749"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022695"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022842"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="RuleBase" id="RU003847"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="PROSITE" id="PS51671"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="PROSITE" id="PS51880"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="ABX35494.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="749" mass="82286" checksum="2942F4D846717300" modified="2008-01-15" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="36" xmlns="http://uniprot.org/uniprot">
    <accession>A9BW29</accession>
    <name>A9BW29_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Daci_3207</name>
        <name evidence="2" type="ordered locus">Daci_4123</name>
    </gene>
    <organism evidence="1 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
            <strain evidence="1">SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="1" key="3">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX35845.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX36754.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012205045.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_3207"/>
    <dbReference type="PRIDE" id="A9BW29"/>
    <dbReference type="EnsemblBacteria" id="ABX35845">
        <property type="protein sequence ID" value="ABX35845"/>
        <property type="gene ID" value="Daci_3207"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="ABX36754">
        <property type="protein sequence ID" value="ABX36754"/>
        <property type="gene ID" value="Daci_4123"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_3207"/>
    <dbReference type="KEGG" id="dac:Daci_4123"/>
    <dbReference type="HOGENOM" id="CLU_1988987_0_0_4"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ABX35845.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX36754.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="135" mass="15327" checksum="D42E2A03AFA27338" modified="2008-01-15" version="1">MKEEHPHAQVLRWIADGETVEARSRGHQGDLGDWEPFPDAFDQYVIAQLVRGYEGRLEFRIKPKTITVGDREIEAPIKSGPGFYITNYGDVFRWFEDANLNPPIDLQKLGRVYATEKAARAAQEAITALLTREPS</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-05-25" version="54" xmlns="http://uniprot.org/uniprot">
    <accession>A9BWD0</accession>
    <name>A9BWD0_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Amidohydrolase 2</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_3514</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX36150.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012205350.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_3514"/>
    <dbReference type="EnsemblBacteria" id="ABX36150">
        <property type="protein sequence ID" value="ABX36150"/>
        <property type="gene ID" value="Daci_3514"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_3514"/>
    <dbReference type="eggNOG" id="COG3618">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_064039_2_1_4"/>
    <dbReference type="OMA" id="HTPRMKV"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016787">
        <property type="term" value="F:hydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006680">
        <property type="entry name" value="Amidohydro-rel"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR032466">
        <property type="entry name" value="Metal_Hydrolase"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04909">
        <property type="entry name" value="Amidohydro_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51556">
        <property type="entry name" value="SSF51556"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Amidohydro-rel" evidence="1">
        <location>
            <begin position="10"/>
            <end position="272"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF04909"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX36150.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="273" mass="29544" checksum="E08EBB31125CF948" modified="2008-01-15" version="1">MHALPAGACDAHLHVFDPRFGTRFGAHATAADYAQLRGAMGLERAVIVQPRAHGTDNRVTLHAIQSLGAASTRGIAVVHPDITDAQLQALHDGGIRGIRFSLHTEHDAAVRLDMLEPLAERIAALGWHVQLHWLASQIEAHAALLQRLPCTLVFDHMARLADSADSAGVHEQAFGVVRELVQQGRAWVKLSGPYLNSRAGLAAGYADCDALAQAWVSEAPQRLVWGSDWPHVTEAAHPPQTPMLLALLSRWIPDAALRARVLVDNAAELYGFD</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-01-19" version="62" xmlns="http://uniprot.org/uniprot">
    <accession>A9BWE6</accession>
    <name>A9BWE6_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ordered locus">Daci_3530</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="5" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Periplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the UPF0065 (bug) family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX36166.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012205366.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_3530"/>
    <dbReference type="EnsemblBacteria" id="ABX36166">
        <property type="protein sequence ID" value="ABX36166"/>
        <property type="gene ID" value="Daci_3530"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_3530"/>
    <dbReference type="eggNOG" id="COG3181">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_045683_0_0_4"/>
    <dbReference type="OMA" id="AGHADFK"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0042597">
        <property type="term" value="C:periplasmic space"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.190.150">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005064">
        <property type="entry name" value="BUG"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR042100">
        <property type="entry name" value="Bug_dom1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006311">
        <property type="entry name" value="TAT_signal"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR42928">
        <property type="entry name" value="PTHR42928"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03401">
        <property type="entry name" value="TctC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF017082">
        <property type="entry name" value="YflP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51318">
        <property type="entry name" value="TAT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="3">
        <location>
            <begin position="1"/>
            <end position="30"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5002736114" evidence="3">
        <location>
            <begin position="31"/>
            <end position="331"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004418"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00006987"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="ABX36166.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="331" mass="35148" checksum="AA239ECE453B06AB" modified="2008-01-15" version="1">MPRTLSRKQFLRAAALLGATTLLPLPQAWADAYPARPVKLVVPFAPGGNTDVLARMVAQGLSESLGQPVIVENISGANGSIGASRVASAANDGYTLLFGTAGTQAINQSLYKNLSEKNLGDFEYVALVTTIPNVLVVNETRTPARTVKDLVARAAAQKTGMSYGSPGSGSTVHLSGELFKSATQLDMVHVPYKGSAPALTDLLGGQIDFIFENVTPALPFVQSGKLKALAVTSEQRLPALPDVPTMKESGYPTFVTGTWNGVLAPKGTPAAIVKRLEEATLKVAGHADFKSKVTALGGEVRLLDSKAFREFTRAEYQRWNAIVQTAKLERQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="63" xmlns="http://uniprot.org/uniprot">
    <accession>A9BWF6</accession>
    <name>A9BWF6_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="1">DNA polymerase III chi subunit HolC</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Daci_3540</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="2" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX36176.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012205376.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_3540"/>
    <dbReference type="PRIDE" id="A9BWF6"/>
    <dbReference type="EnsemblBacteria" id="ABX36176">
        <property type="protein sequence ID" value="ABX36176"/>
        <property type="gene ID" value="Daci_3540"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_3540"/>
    <dbReference type="eggNOG" id="COG2927">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_131584_2_0_4"/>
    <dbReference type="OMA" id="WQFEPSA"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
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    <dbReference type="GO" id="GO:0003887">
        <property type="term" value="F:DNA-directed DNA polymerase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
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        <property type="term" value="P:DNA replication"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.10110">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007459">
        <property type="entry name" value="DNA_pol3_chi"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036768">
        <property type="entry name" value="PolIII_chi_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR38767">
        <property type="entry name" value="PTHR38767"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04364">
        <property type="entry name" value="DNA_pol3_chi"/>
        <property type="match status" value="1"/>
    </dbReference>
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        <property type="entry name" value="SSF102400"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ABX36176.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="143" mass="15996" checksum="DC462FAADBB34DDA" modified="2008-01-15" version="1">MTEVAFHFNAPDKLAYVCRLARKALRHRTQLVVLGSPPLLKALSPRLWSVSPTDFLAHAGEGDGADIMAFSPIVLLERLDGAPHHDMLVNLGGEVPEGFERFARVVEVVSATDEEDRHLARQRWKHYAAQGISIKRHDLVLKE</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-01-19" version="35" xmlns="http://uniprot.org/uniprot">
    <accession>A9BWG2</accession>
    <name>A9BWG2_DELAS</name>
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        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_3548</name>
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            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
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            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
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            <authorList>
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                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX36182.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_3548"/>
    <dbReference type="EnsemblBacteria" id="ABX36182">
        <property type="protein sequence ID" value="ABX36182"/>
        <property type="gene ID" value="Daci_3548"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_3548"/>
    <dbReference type="HOGENOM" id="CLU_2329110_0_0_4"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
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    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
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        <location>
            <begin position="20"/>
            <end position="98"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="23"/>
            <end position="37"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="61"/>
            <end position="91"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX36182.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="98" mass="10540" checksum="DF7476DBE8F766A4" modified="2008-01-15" version="1">MAKLYGINPKTVAKWRARTSVLDEPMGPRDRASRHLSQDARTSGNCVTQARAFVAGRSHGTAPGDSTQAQPQRLASMPAASRNQPTTRNAPATKARKV</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2021-09-29" version="49" xmlns="http://uniprot.org/uniprot">
    <accession>A9BWH5</accession>
    <name>A9BWH5_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Daci_3561</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
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            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="2" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX36195.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012205395.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_3561"/>
    <dbReference type="EnsemblBacteria" id="ABX36195">
        <property type="protein sequence ID" value="ABX36195"/>
        <property type="gene ID" value="Daci_3561"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_3561"/>
    <dbReference type="eggNOG" id="COG0645">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_105030_3_0_4"/>
    <dbReference type="OMA" id="HMVCGKI"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ABX36195.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="185" mass="20114" checksum="EB41ED1D42623A43" modified="2008-01-15" version="1">MQVSEQSRPRCAEYADAPAANARLATLHMVCGKIGSGKSTLARQLAAEPGTVLVSEDSWLAGLYPGEMQSVADYVRCSTRLKGLMGAHVQALLDAGVSVVLDFPANTLEGRGWARSVFKKVGASHRLHFLDVPDEVCKQRLRVRNAAGEHPFQASDEQFDLITSYFVAPSDEEGFDVVRHPYAPV</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="71" xmlns="http://uniprot.org/uniprot">
    <accession>A9BWI9</accession>
    <name>A9BWI9_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="7">Major facilitator superfamily MFS_1</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ordered locus">Daci_3575</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
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                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="8" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX36209.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012205409.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_3575"/>
    <dbReference type="PRIDE" id="A9BWI9"/>
    <dbReference type="EnsemblBacteria" id="ABX36209">
        <property type="protein sequence ID" value="ABX36209"/>
        <property type="gene ID" value="Daci_3575"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_3575"/>
    <dbReference type="eggNOG" id="COG0477">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_000960_28_2_4"/>
    <dbReference type="OMA" id="NLPVMAV"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0022857">
        <property type="term" value="F:transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.1250.20">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011701">
        <property type="entry name" value="MFS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020846">
        <property type="entry name" value="MFS_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036259">
        <property type="entry name" value="MFS_trans_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07690">
        <property type="entry name" value="MFS_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF103473">
        <property type="entry name" value="SSF103473"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50850">
        <property type="entry name" value="MFS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4 5" id="KW-0472">Membrane</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 5" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="3 5" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="26"/>
            <end position="50"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="62"/>
            <end position="82"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="94"/>
            <end position="113"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="119"/>
            <end position="140"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="152"/>
            <end position="172"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="178"/>
            <end position="202"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="214"/>
            <end position="231"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="243"/>
            <end position="261"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="282"/>
            <end position="304"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="316"/>
            <end position="336"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="348"/>
            <end position="366"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="372"/>
            <end position="397"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="418"/>
            <end position="437"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="487"/>
            <end position="507"/>
        </location>
    </feature>
    <feature type="domain" description="MFS" evidence="6">
        <location>
            <begin position="28"/>
            <end position="510"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="PROSITE" id="PS50850"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="ABX36209.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="514" mass="53427" checksum="AC74D33E96511B03" modified="2008-01-15" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="56" xmlns="http://uniprot.org/uniprot">
    <accession>A9BX02</accession>
    <name>A9BX02_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">Universal stress protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="4" type="ordered locus">Daci_4356</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="5" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="2">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="1 2">Belongs to the universal stress protein A family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX36987.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012206159.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_4356"/>
    <dbReference type="PRIDE" id="A9BX02"/>
    <dbReference type="EnsemblBacteria" id="ABX36987">
        <property type="protein sequence ID" value="ABX36987"/>
        <property type="gene ID" value="Daci_4356"/>
    </dbReference>
    <dbReference type="GeneID" id="60688627"/>
    <dbReference type="KEGG" id="dac:Daci_4356"/>
    <dbReference type="eggNOG" id="COG0589">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_049301_11_0_4"/>
    <dbReference type="OMA" id="VSHKVSQ"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.620">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014729">
        <property type="entry name" value="Rossmann-like_a/b/a_fold"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006015">
        <property type="entry name" value="Universal_stress_UspA"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006016">
        <property type="entry name" value="UspA"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00582">
        <property type="entry name" value="Usp"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF006276">
        <property type="entry name" value="UspA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR01438">
        <property type="entry name" value="UNVRSLSTRESS"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Usp" evidence="3">
        <location>
            <begin position="1"/>
            <end position="144"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00008791"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="PIRNR" id="PIRNR006276"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF00582"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="ABX36987.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="145" mass="15170" checksum="0664E996C8ECCE7F" modified="2008-01-15" version="1">MFKHILVPVDGSNSSMLAVHKGVELAKAFGSTLTAVYVVDPYPFTGVGADFAYGQSQYLSAATAEANTTLDAVKKITDEAGITATTVVGEGHAVHEGIVRVLESTGADLIIMGSQGRRGLEKLMLGSVTQRVLGAVRVPVLVVRE</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-05-25" version="62" xmlns="http://uniprot.org/uniprot">
    <accession>A9BX48</accession>
    <name>A9BX48_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="6">Lysine exporter protein (LYSE/YGGA)</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ordered locus">Daci_4402</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="7" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX37033.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012206205.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_4402"/>
    <dbReference type="EnsemblBacteria" id="ABX37033">
        <property type="protein sequence ID" value="ABX37033"/>
        <property type="gene ID" value="Daci_4402"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_4402"/>
    <dbReference type="eggNOG" id="COG1280">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_079569_2_3_4"/>
    <dbReference type="OMA" id="HSLACAF"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006865">
        <property type="term" value="P:amino acid transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001123">
        <property type="entry name" value="LeuE-type"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30086">
        <property type="entry name" value="PTHR30086"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01810">
        <property type="entry name" value="LysE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF006324">
        <property type="entry name" value="LeuE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="4 5" id="KW-0472">Membrane</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 5" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="3 5" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="6"/>
            <end position="28"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="40"/>
            <end position="61"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="67"/>
            <end position="88"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="117"/>
            <end position="139"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="151"/>
            <end position="176"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="188"/>
            <end position="205"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="ABX37033.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="212" mass="22636" checksum="DD03CED41E7A249E" modified="2008-01-15" version="1">MTIAHWLVFCGVSLLMCFTPGPAVLLAISNSVDVGARRTALSSLGSSVGIFVVSGLAMIGMGTILAMSAHAFLAMKVAGAMYLIWLGVKRWRSKDGLLGSDAGLAPTQRRERRNWQLVAQGMGVSLTNPKAILFFSALFPQFVVPGEPLLTQYLVLTTTFAVCALISHACYVLLISLIKGHLVAHAKLFNRIVGGTFIALGVGLLRTRHKLG</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="65" xmlns="http://uniprot.org/uniprot">
    <accession>A9BX59</accession>
    <name>A9BX59_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_5506</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the GTP cyclohydrolase I type 2/NIF3 family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX38135.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012207304.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_5506"/>
    <dbReference type="PRIDE" id="A9BX59"/>
    <dbReference type="EnsemblBacteria" id="ABX38135">
        <property type="protein sequence ID" value="ABX38135"/>
        <property type="gene ID" value="Daci_5506"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_5506"/>
    <dbReference type="eggNOG" id="COG0327">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_037423_3_0_4"/>
    <dbReference type="OMA" id="HGLFWRG"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002678">
        <property type="entry name" value="DUF34/NIF3"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036069">
        <property type="entry name" value="DUF34/NIF3_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR13799">
        <property type="entry name" value="PTHR13799"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01784">
        <property type="entry name" value="NIF3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF102705">
        <property type="entry name" value="SSF102705"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00486">
        <property type="entry name" value="YbgI_SA1388"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00006964"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX38135.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="253" mass="27384" checksum="D6FA555DF77B179E" modified="2008-01-15" version="1">MSTTRQELLAHFDGLLQPERFKDYGPNGLQVEGRGEIRRIVSGVTASRALIEAAIEAQADAIFVHHGLFWRGMDGRITGWLKERIRLLLAHDINLFAYHLPLDAHPQWGNNAQLGVQLGLEGQATFGEQNLGWMAAAEFADAAALGRHVQQALGRTPVCVGGERLRPIHPIRRIAWCTGGAQGFFEAAIAAGADAFITGEISEPQAHLARETGVAFLAAGHHATERYGAPALAGQVALELGLEHRFIEIDNPA</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="64" xmlns="http://uniprot.org/uniprot">
    <accession>A9BX85</accession>
    <name>A9BX85_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Toluene tolerance family protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_5532</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX38161.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012207330.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_5532"/>
    <dbReference type="PRIDE" id="A9BX85"/>
    <dbReference type="EnsemblBacteria" id="ABX38161">
        <property type="protein sequence ID" value="ABX38161"/>
        <property type="gene ID" value="Daci_5532"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_5532"/>
    <dbReference type="eggNOG" id="COG2854">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_094502_3_1_4"/>
    <dbReference type="OMA" id="FTEYTDQ"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008869">
        <property type="entry name" value="MlaC/ttg2D"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR36573">
        <property type="entry name" value="PTHR36573"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF05494">
        <property type="entry name" value="MlaC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF004649">
        <property type="entry name" value="MlaC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="1">
        <location>
            <begin position="1"/>
            <end position="28"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5002732631" evidence="1">
        <location>
            <begin position="29"/>
            <end position="213"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX38161.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="213" mass="23330" checksum="AE95D92085835007" modified="2008-01-15" version="1">MINRRAWSAAAAAVLAMGTWGAALPVHAADETPDALIKRVSTDVLETIKKDPSLREGDVSKVNALVNDKVMPYVNFRRMTSASVGPAWRQATPAQREKLETEFKALLIRTYSGALTQVSNQTINVKPVRAAPGDIDVLVRTEVLGRGEPVQLDYRLEKSGDGWKIYNLNVLGVWLVETYRNQFSQEINARGIDGLIETLATRGKMPATPASKG</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="49" xmlns="http://uniprot.org/uniprot">
    <accession>A9BXT2</accession>
    <name>A9BXT2_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_5730</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX38358.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012207527.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_5730"/>
    <dbReference type="PRIDE" id="A9BXT2"/>
    <dbReference type="EnsemblBacteria" id="ABX38358">
        <property type="protein sequence ID" value="ABX38358"/>
        <property type="gene ID" value="Daci_5730"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_5730"/>
    <dbReference type="eggNOG" id="COG3817">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_078249_0_0_4"/>
    <dbReference type="OMA" id="CWLTRDT"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009323">
        <property type="entry name" value="DUF979"/>
    </dbReference>
    <dbReference type="Pfam" id="PF06166">
        <property type="entry name" value="DUF979"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="6"/>
            <end position="24"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="55"/>
            <end position="76"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="97"/>
            <end position="120"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="132"/>
            <end position="149"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="207"/>
            <end position="233"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="254"/>
            <end position="275"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="295"/>
            <end position="315"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX38358.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="317" mass="33286" checksum="7F6F79D69E73E83E" modified="2008-01-15" version="1">MTLTIQHLYYLVGFVLAVTAVMTLRDASNPKRWSSGLFWALYAAVFLVGNELSPVIVGVIAVAMALIAGFGGVGSGRHAPRSDAEYLASAKRLGNKLFVPALAIPLITMIGTLSASHLVFGGTPLLDPKATTLVSLGVGCVLALGLACWLTRETPAQGMRESRRLTDALGWALVLPQMLGMLGLVFSDAGVGKAVAYVTTTYINMDIRFVAVAVYVLGMALFTVVMGNGFAAFPVMTGGVGVPILVGVYHGDPAVMAAIGMLSGYCGTLLTPMAANFNLVPAALLEIDKNAVIRAQVPTALALLTANVFLLYFLMFR</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="70" xmlns="http://uniprot.org/uniprot">
    <accession>A9BY98</accession>
    <name>A9BY98_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">Arsenate reductase</fullName>
            <ecNumber evidence="3">1.20.4.1</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="5" type="ordered locus">Daci_1593</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="6" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="3">
            <text>[glutaredoxin]-dithiol + arsenate + glutathione + H(+) = arsenite + glutathionyl-S-S-[glutaredoxin] + H2O</text>
            <dbReference type="Rhea" id="RHEA:22016"/>
            <dbReference type="Rhea" id="RHEA-COMP:10729"/>
            <dbReference type="Rhea" id="RHEA-COMP:17668"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:29242"/>
            <dbReference type="ChEBI" id="CHEBI:29950"/>
            <dbReference type="ChEBI" id="CHEBI:48597"/>
            <dbReference type="ChEBI" id="CHEBI:57925"/>
            <dbReference type="ChEBI" id="CHEBI:146199"/>
            <dbReference type="EC" id="1.20.4.1"/>
        </reaction>
    </comment>
    <comment type="similarity">
        <text evidence="1 2 3">Belongs to the ArsC family.</text>
    </comment>
    <dbReference type="EC" id="1.20.4.1" evidence="3"/>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX34237.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_1593"/>
    <dbReference type="PRIDE" id="A9BY98"/>
    <dbReference type="EnsemblBacteria" id="ABX34237">
        <property type="protein sequence ID" value="ABX34237"/>
        <property type="gene ID" value="Daci_1593"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_1593"/>
    <dbReference type="eggNOG" id="COG1393">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_116644_0_0_4"/>
    <dbReference type="OMA" id="MVTHPKL"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008794">
        <property type="term" value="F:arsenate reductase (glutaredoxin) activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd03034">
        <property type="entry name" value="ArsC_ArsC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006659">
        <property type="entry name" value="Arsenate_reductase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006660">
        <property type="entry name" value="Arsenate_reductase-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036249">
        <property type="entry name" value="Thioredoxin-like_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30041">
        <property type="entry name" value="PTHR30041"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03960">
        <property type="entry name" value="ArsC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52833">
        <property type="entry name" value="SSF52833"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00014">
        <property type="entry name" value="arsC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51353">
        <property type="entry name" value="ARSC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="4">
        <location>
            <begin position="1"/>
            <end position="21"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00007198"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU01282"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="RuleBase" id="RU362029"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="ABX34237.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="142" mass="15417" checksum="E39359D7ACE500A0" modified="2008-01-15" version="1">MPIPRKPWPDAHFHGPTLRPMNTTAPRTDITIYHNNRCSNSRGALALLRDNGVEPTIVDYIAQPLDAAQLQALVRRLGVPVRELLRSKEAVFAELGLGDASVSDAQLIAAVAEHPVLLNRPIVVTPKGAALCRPPEKVLALI</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="58" xmlns="http://uniprot.org/uniprot">
    <accession>A9BYC4</accession>
    <name>A9BYC4_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Putative phage repressor</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_1619</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX34263.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012203548.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_1619"/>
    <dbReference type="PRIDE" id="A9BYC4"/>
    <dbReference type="EnsemblBacteria" id="ABX34263">
        <property type="protein sequence ID" value="ABX34263"/>
        <property type="gene ID" value="Daci_1619"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_1619"/>
    <dbReference type="eggNOG" id="COG2932">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_066192_1_2_4"/>
    <dbReference type="OMA" id="RETWHIE"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd00093">
        <property type="entry name" value="HTH_XRE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="CDD" id="cd06529">
        <property type="entry name" value="S24_LexA-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.260.40">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001387">
        <property type="entry name" value="Cro/C1-type_HTH"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010982">
        <property type="entry name" value="Lambda_DNA-bd_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR039418">
        <property type="entry name" value="LexA-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036286">
        <property type="entry name" value="LexA/Signal_pep-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015927">
        <property type="entry name" value="Peptidase_S24_S26A/B/C"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00717">
        <property type="entry name" value="Peptidase_S24"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47413">
        <property type="entry name" value="SSF47413"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51306">
        <property type="entry name" value="SSF51306"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Peptidase_S24" evidence="1">
        <location>
            <begin position="116"/>
            <end position="231"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF00717"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX34263.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="237" mass="26056" checksum="3585A2077821FF44" modified="2008-01-15" version="1">MEKGSRKAIVTDLHRQEAQALREIWDRHKPNQAEFGREFGIGGQTAVSNFLRGKSALSMKAATGFATGLGCDIGEFSPRLAREASHIAEVVAASDPSNPSEFVPVRRVDVRFSNGHGKVIYTEDDHPPLVFRRDFLNSVGIRNGDAVVVEAEGVSNEPKIMDGSAVLVNRGDRERLAGDFFAFRVDGELMIKRLERIDGVGILATAENSSFRPKSRIYTKAEDFEIIGRAVWVGSLL</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="78" xmlns="http://uniprot.org/uniprot">
    <accession>A9BYG7</accession>
    <name>A9BYG7_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="5">Chloromuconate cycloisomerase</fullName>
            <ecNumber evidence="5">5.5.1.7</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="9" type="ordered locus">Daci_1870</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="9 10" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="10" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>(2R)-2-chloro-2,5-dihydro-5-oxofuran-2-acetate = 3-chloro-cis,cis-muconate + H(+)</text>
            <dbReference type="Rhea" id="RHEA:11032"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:17589"/>
            <dbReference type="ChEBI" id="CHEBI:85538"/>
            <dbReference type="EC" id="5.5.1.7"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="2">
            <name>Mn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29035"/>
        </cofactor>
    </comment>
    <comment type="pathway">
        <text evidence="3">Aromatic compound metabolism; 3-chlorocatechol degradation.</text>
    </comment>
    <comment type="similarity">
        <text evidence="4">Belongs to the mandelate racemase/muconate lactonizing enzyme family.</text>
    </comment>
    <dbReference type="EC" id="5.5.1.7" evidence="5"/>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX34510.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012203795.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_1870"/>
    <dbReference type="PRIDE" id="A9BYG7"/>
    <dbReference type="EnsemblBacteria" id="ABX34510">
        <property type="protein sequence ID" value="ABX34510"/>
        <property type="gene ID" value="Daci_1870"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_1870"/>
    <dbReference type="eggNOG" id="COG4948">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_030273_4_5_4"/>
    <dbReference type="OMA" id="MFGCYSD"/>
    <dbReference type="UniPathway" id="UPA00083"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0018850">
        <property type="term" value="F:chloromuconate cycloisomerase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030145">
        <property type="term" value="F:manganese ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0018849">
        <property type="term" value="F:muconate cycloisomerase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0019439">
        <property type="term" value="P:aromatic compound catabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009063">
        <property type="term" value="P:cellular amino acid catabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd03318">
        <property type="entry name" value="MLE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.20.20.120">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.390.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013370">
        <property type="entry name" value="Chloromuconate_cycloisomerase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036849">
        <property type="entry name" value="Enolase-like_C_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029017">
        <property type="entry name" value="Enolase-like_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029065">
        <property type="entry name" value="Enolase_C-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018110">
        <property type="entry name" value="Mandel_Rmase/mucon_lact_enz_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013342">
        <property type="entry name" value="Mandelate_racemase_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013341">
        <property type="entry name" value="Mandelate_racemase_N_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13378">
        <property type="entry name" value="MR_MLE_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02746">
        <property type="entry name" value="MR_MLE_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SFLD" id="SFLDG01258">
        <property type="entry name" value="(chloro)muconate_cycloisomeras"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00922">
        <property type="entry name" value="MR_MLE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51604">
        <property type="entry name" value="SSF51604"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54826">
        <property type="entry name" value="SSF54826"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR02534">
        <property type="entry name" value="mucon_cyclo"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00908">
        <property type="entry name" value="MR_MLE_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00909">
        <property type="entry name" value="MR_MLE_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="6" id="KW-0058">Aromatic hydrocarbons catabolism</keyword>
    <keyword evidence="9" id="KW-0413">Isomerase</keyword>
    <keyword evidence="7" id="KW-0464">Manganese</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="MR_MLE" evidence="8">
        <location>
            <begin position="148"/>
            <end position="246"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00000453"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00001936"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00004674"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00008031"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00012127"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022797"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023211"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="SMART" id="SM00922"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="ABX34510.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="395" mass="42892" checksum="D573A60A8E74ADA0" modified="2008-01-15" version="1">MQDRFLIERIEARILDIPTIRPHKLSFGSISRQSPVIVQLWLRNGATGFGEAATIGGPSWNEESPESIHHAITNHLAPSLIGQDGARFEACLSRMDLACKGNAFAKSAVEIALMDAVARSLQLPLWQLLGGKQRDSLPLAWTLASGDIERDLAEAHLRLEQKRHRIFKMKIGARTPEADVAHVSEIARGLQGRATLTVDVNQAWDGATARRFLPQLIDAGVTLIEQPVAGWNVPALRELTATLQGALVMADESVCTPYDAMRLAREQASHVFSLKVAKHGGLLRTRKVAAIAQAADIGWYGGTMLETSIGSAASAHVFATLGGQHYNCELFGPQLLVDDIVTERMAIRDFELQLPDGPGLGVEIDLQQLARFDRALAGSQPQHFDMGQARTGAAT</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="64" xmlns="http://uniprot.org/uniprot">
    <accession>A9BZ92</accession>
    <name>A9BZ92_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="7">Inner-membrane translocator</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ordered locus">Daci_2554</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="8" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX35192.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012204471.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_2554"/>
    <dbReference type="PRIDE" id="A9BZ92"/>
    <dbReference type="EnsemblBacteria" id="ABX35192">
        <property type="protein sequence ID" value="ABX35192"/>
        <property type="gene ID" value="Daci_2554"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_2554"/>
    <dbReference type="eggNOG" id="COG0559">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_039929_2_1_4"/>
    <dbReference type="OMA" id="AILMWRP"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0022857">
        <property type="term" value="F:transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001851">
        <property type="entry name" value="ABC_transp_permease"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02653">
        <property type="entry name" value="BPD_transp_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="5 6" id="KW-0472">Membrane</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 6" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="4 6" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="40"/>
            <end position="62"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="69"/>
            <end position="88"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="100"/>
            <end position="125"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="137"/>
            <end position="155"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="182"/>
            <end position="201"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="230"/>
            <end position="252"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="264"/>
            <end position="292"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="299"/>
            <end position="319"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="ABX35192.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="330" mass="35031" checksum="52E880E7D438C86C" modified="2008-01-15" version="1">MNKLNRLDVDFKPLLLVPVLALVALPLVGSGSTWLTLTVAGLAMGMIVFIIASGLTLVFGLMDVLNFGHGVFIALGAFVATSVLGAMGDWTGSDQLWRNLLAVLPAMVVAMLVAGAIGLAFERFIVRPVYGQHLKQILITMGGMIIGEELIKLIWGPQQMPLPLPQGMKGAWLLGDAAVEKYRVVAVLVGLAVFALLAWTLSRTKIGLLIRAGVQDREMVEALGYRVRRLFVGVFVAGSALAGLGGVMWGMYQQSVVPQMGAQVNVLIFIVIIIGGLGSTGGALIGALLVGLMANYTGFLVPKVALFSNIALMVAILLWRPQGVYPVANR</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="64" xmlns="http://uniprot.org/uniprot">
    <accession>A9BZN7</accession>
    <name>A9BZN7_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Extracellular ligand-binding receptor</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Daci_3307</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="4" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX35945.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012205145.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_3307"/>
    <dbReference type="PRIDE" id="A9BZN7"/>
    <dbReference type="EnsemblBacteria" id="ABX35945">
        <property type="protein sequence ID" value="ABX35945"/>
        <property type="gene ID" value="Daci_3307"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_3307"/>
    <dbReference type="eggNOG" id="COG0683">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_027128_3_0_4"/>
    <dbReference type="OMA" id="AKHNERN"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR028081">
        <property type="entry name" value="Leu-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR028082">
        <property type="entry name" value="Peripla_BP_I"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13458">
        <property type="entry name" value="Peripla_BP_6"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53822">
        <property type="entry name" value="SSF53822"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-0675">Receptor</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="1">
        <location>
            <begin position="1"/>
            <end position="22"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5002733193" evidence="1">
        <location>
            <begin position="23"/>
            <end position="411"/>
        </location>
    </feature>
    <feature type="domain" description="Peripla_BP_6" evidence="2">
        <location>
            <begin position="27"/>
            <end position="374"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF13458"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ABX35945.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="411" mass="44996" checksum="3141DD926C8E0A85" modified="2008-01-15" version="1">MKFAIKALTASLALACATGAMAQKGETVKVAWIDPLSGLMAALGSNQLKSLQYIAEELNKGTASGVKFEIIGIDNKLSPQETTAALRSAMDQGVRYVFQGNGSGPALAIMDALEKHNARNKGKEVVYLNYAAVDPDLTNSKCSYWHFRLDADTSMKMEALTTYMKDLPEVKKVYLINQNYSHGQQVSKYAKEMLKRKRPDVEIVGDDFSPLAQVRDFAPYIAKIKQSGADSVITGNWGSDLALLIKAASDAGLNNVKFYTYYAIATGAPTAMGAAAADKVYMVGYGHMNLPGPLDRITKGYKAKFNDDMYTGSLYSGLTMLDQAFLRAKTTDPAKVAATMEGMKFNSLNGEVEMRKSDHQLQQGLFISRWEKAGGKYPMDSENTGYTFVPVKYYEPYVASTPTSCEMKRPS</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="83" xmlns="http://uniprot.org/uniprot">
    <accession>A9C079</accession>
    <name>A9C079_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Transcriptional regulator, LysR family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ordered locus">Daci_4014</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="5" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the LysR transcriptional regulatory family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX36645.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012205839.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="SMR" id="A9C079"/>
    <dbReference type="STRING" id="398578.Daci_4014"/>
    <dbReference type="EnsemblBacteria" id="ABX36645">
        <property type="protein sequence ID" value="ABX36645"/>
        <property type="gene ID" value="Daci_4014"/>
    </dbReference>
    <dbReference type="GeneID" id="60688338"/>
    <dbReference type="KEGG" id="dac:Daci_4014"/>
    <dbReference type="eggNOG" id="COG0583">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_039613_6_0_4"/>
    <dbReference type="OMA" id="WLLVETY"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003700">
        <property type="term" value="F:DNA-binding transcription factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005119">
        <property type="entry name" value="LysR_subst-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000847">
        <property type="entry name" value="Tscrpt_reg_HTH_LysR"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036390">
        <property type="entry name" value="WH_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00126">
        <property type="entry name" value="HTH_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03466">
        <property type="entry name" value="LysR_substrate"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00039">
        <property type="entry name" value="HTHLYSR"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46785">
        <property type="entry name" value="SSF46785"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50931">
        <property type="entry name" value="HTH_LYSR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HTH lysR-type" evidence="3">
        <location>
            <begin position="1"/>
            <end position="58"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="294"/>
            <end position="316"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00009437"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="PROSITE" id="PS50931"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="ABX36645.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="316" mass="34611" checksum="1ED6301D7564B75B" modified="2008-01-15" version="1">MTLVQLRHLISVAQTGSFSRSAEAMHLTQPALSRSVRALEQELGIPLFDRIGRHSELTAFGREMLGRARALVAEADELRDRGRQLREGAAGTVRVGLGSGPGAILMTPFLQHMTVHHPGVRTEVARGSTDLLVHSLRERLLDALVVDLRALRPAPDLALDVVHEMRAAFMCRTDHPLARLQRDLRFEDVQRYPVASTPLSDQVAWLLVETYGATAHPARFVTLQCEELPSLVDVARNSDTVLLAVRAVAPDLAELPMDPPMRSTARFGLVTLRQRSEAPTLAILRGLMGKLMADDAPAPERAPSHGGRLGRMALPD</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="68" xmlns="http://uniprot.org/uniprot">
    <accession>A9C0A9</accession>
    <name>A9C0A9_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Flavodoxin/nitric oxide synthase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ordered locus">Daci_4044</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="6" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>FMN</name>
            <dbReference type="ChEBI" id="CHEBI:58210"/>
        </cofactor>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX36675.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_4044"/>
    <dbReference type="PRIDE" id="A9C0A9"/>
    <dbReference type="EnsemblBacteria" id="ABX36675">
        <property type="protein sequence ID" value="ABX36675"/>
        <property type="gene ID" value="Daci_4044"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_4044"/>
    <dbReference type="eggNOG" id="COG0655">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_051402_2_1_4"/>
    <dbReference type="OMA" id="WVGTGMM"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009055">
        <property type="term" value="F:electron transfer activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0010181">
        <property type="term" value="F:FMN binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.360">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008254">
        <property type="entry name" value="Flavodoxin/NO_synth"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001226">
        <property type="entry name" value="Flavodoxin_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029039">
        <property type="entry name" value="Flavoprotein-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005025">
        <property type="entry name" value="FMN_Rdtase-like"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03358">
        <property type="entry name" value="FMN_red"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52218">
        <property type="entry name" value="SSF52218"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00201">
        <property type="entry name" value="FLAVODOXIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50902">
        <property type="entry name" value="FLAVODOXIN_LIKE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0285">Flavoprotein</keyword>
    <keyword evidence="3" id="KW-0288">FMN</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Flavodoxin-like" evidence="4">
        <location>
            <begin position="24"/>
            <end position="169"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001917"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022630"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022643"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="PROSITE" id="PS50902"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="ABX36675.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="204" mass="21840" checksum="90C48D2AEB2E7D42" modified="2008-01-15" version="1">MNAALAGLWLRRASEDWISCMSDIVVVYHSGYGHTQRMAQAVADGAGARMLSIDSDGQLPAGGWELLAAADAIVFGSPTYMGGPSWQFKRFADASSKPWFVQAWKDKLFAGFTNSASVNGNKQTTLDYLFQLAMQHGGLWVGSGMLPSNARAAQRNDLNWIGAFSGAMAQSASDASAAEMLPGDLETARVFGERVAQQALRLKA</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2021-06-02" version="36" xmlns="http://uniprot.org/uniprot">
    <accession>A9C0F6</accession>
    <name>A9C0F6_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Daci_4091</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="2" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX36722.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012205914.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_4091"/>
    <dbReference type="EnsemblBacteria" id="ABX36722">
        <property type="protein sequence ID" value="ABX36722"/>
        <property type="gene ID" value="Daci_4091"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_4091"/>
    <dbReference type="HOGENOM" id="CLU_1936753_0_0_4"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ABX36722.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="129" mass="13583" checksum="9D469413E33C1E56" modified="2008-01-15" version="1">MADFYTEMAAMTRGLLAPTSQGGLGQGEIVLTRKTPGTPGPNPWDPVEPVTQAETLRGAVRGVSQRLVGTEMGGTVILASDRQAICEVPQMQYQAGDTLTVDSVPVHIIAFERIPAAGTTSAVKFTIRG</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2020-12-02" version="48" xmlns="http://uniprot.org/uniprot">
    <accession>A9C0X3</accession>
    <name>A9C0X3_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Putative ABC transporter permease protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_5808</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX38436.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_5808"/>
    <dbReference type="EnsemblBacteria" id="ABX38436">
        <property type="protein sequence ID" value="ABX38436"/>
        <property type="gene ID" value="Daci_5808"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_5808"/>
    <dbReference type="eggNOG" id="COG4587">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_084465_0_1_4"/>
    <dbReference type="OMA" id="YALWFAR"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="137"/>
            <end position="158"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="164"/>
            <end position="192"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="204"/>
            <end position="226"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="246"/>
            <end position="272"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX38436.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="289" mass="30756" checksum="0A5711F3DD6AF5D3" modified="2008-01-15" version="1">MGPHQRLHRMHRLQHLLRPYKAAFASRFLLMLQYRTAAYAGFATQCWWGAIKTMVLAAFYGSASASAGAPISLEHAITYTWLAQGLFALLPWSGDPDVALAVRTGAVAYDRLRPVDAYALWFVRSAGWIAARVLPRVALMVAFAGLALPLMGLGAWGWQPPAGWAAGLGFAASMLLALLLSTALVMLLNVAAAAALNEKGINTLAAPVVIVLSGNLLPLALMPDAWQAALLLQPLAGVMDIPARIYFGQMAGAQMLACLALQALWIAVIVALGRVAMARTMRGLEVQGG</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="68" xmlns="http://uniprot.org/uniprot">
    <accession>A9C0X8</accession>
    <name>A9C0X8_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="7">Helicase c2</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ordered locus">Daci_5813</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="8" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX38441.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012207610.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_5813"/>
    <dbReference type="PRIDE" id="A9C0X8"/>
    <dbReference type="EnsemblBacteria" id="ABX38441">
        <property type="protein sequence ID" value="ABX38441"/>
        <property type="gene ID" value="Daci_5813"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_5813"/>
    <dbReference type="eggNOG" id="COG1199">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_006515_7_0_4"/>
    <dbReference type="OMA" id="QVNPVNE"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003678">
        <property type="term" value="F:DNA helicase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016818">
        <property type="term" value="F:hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006139">
        <property type="term" value="P:nucleobase-containing compound metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.320.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006555">
        <property type="entry name" value="ATP-dep_Helicase_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010614">
        <property type="entry name" value="DEAD_2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045028">
        <property type="entry name" value="DinG/Rad3-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014013">
        <property type="entry name" value="Helic_SF1/SF2_ATP-bd_DinG/Rad3"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006554">
        <property type="entry name" value="Helicase-like_DEXD_c2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011604">
        <property type="entry name" value="PDDEXK-like_dom_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11472">
        <property type="entry name" value="PTHR11472"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF06733">
        <property type="entry name" value="DEAD_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13307">
        <property type="entry name" value="Helicase_C_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00488">
        <property type="entry name" value="DEXDc2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00491">
        <property type="entry name" value="HELICc2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51193">
        <property type="entry name" value="HELICASE_ATP_BIND_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="3 7" id="KW-0347">Helicase</keyword>
    <keyword evidence="2" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="1" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Helicase ATP-binding" evidence="6">
        <location>
            <begin position="173"/>
            <end position="461"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="5">
        <location>
            <begin position="261"/>
            <end position="290"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Pro residues" evidence="5">
        <location>
            <begin position="268"/>
            <end position="290"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022806"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="PROSITE" id="PS51193"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="ABX38441.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="790" mass="86918" checksum="DA021E0A179F2D3E" modified="2008-01-15" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="78" xmlns="http://uniprot.org/uniprot">
    <accession>A9C1D9</accession>
    <name>A9C1D9_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="8">Na+/H+ antiporter</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="8" type="ordered locus">Daci_5974</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="9" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="6">Na(+)/H(+) antiporter that extrudes sodium in exchange for external protons.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="6">Cell inner membrane</location>
            <topology evidence="6">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="6">Belongs to the monovalent cation:proton antiporter 1 (CPA1) transporter (TC 2.A.36) family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX38602.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012207771.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_5974"/>
    <dbReference type="PRIDE" id="A9C1D9"/>
    <dbReference type="EnsemblBacteria" id="ABX38602">
        <property type="protein sequence ID" value="ABX38602"/>
        <property type="gene ID" value="Daci_5974"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_5974"/>
    <dbReference type="eggNOG" id="COG0025">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_005912_6_3_4"/>
    <dbReference type="OMA" id="TPPFWAS"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015299">
        <property type="term" value="F:solute:proton antiporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006814">
        <property type="term" value="P:sodium ion transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006153">
        <property type="entry name" value="Cation/H_exchanger"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018422">
        <property type="entry name" value="Cation/H_exchanger_CPA1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004705">
        <property type="entry name" value="Cation/H_exchanger_CPA1_bac"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10110">
        <property type="entry name" value="PTHR10110"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00999">
        <property type="entry name" value="Na_H_Exchanger"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00831">
        <property type="entry name" value="a_cpa1"/>
        <property type="match status" value="1"/>
    </dbReference>
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    <keyword evidence="5 6" id="KW-0739">Sodium transport</keyword>
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        </location>
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        </source>
    </evidence>
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        <source>
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    </evidence>
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        <source>
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    </evidence>
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        <source>
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        <source>
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        <source>
            <dbReference type="RuleBase" id="RU366002"/>
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            <dbReference type="Pfam" id="PF00999"/>
        </source>
    </evidence>
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        <source>
            <dbReference type="EMBL" id="ABX38602.1"/>
        </source>
    </evidence>
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        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="577" mass="63054" checksum="2A3C6F4D4603C547" modified="2008-01-15" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="66" xmlns="http://uniprot.org/uniprot">
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        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
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                <person name="Fischer K."/>
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        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
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            <strain evidence="2">DSM 14801 / SPH-1</strain>
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            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
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            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
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    </dbReference>
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    </dbReference>
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    </dbReference>
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    </dbReference>
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        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
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    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
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        <source>
            <dbReference type="EMBL" id="ABX38606.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="230" mass="24106" checksum="26D2EC3ADEEDA368" modified="2008-01-15" version="1">MTAFEAVLFDCDGVLVDSESITNRVLCTMLNESGWPISTEECLREFIGKTVRSQAALIEARTGKPLTDAWMAAFYERRNAALRAELVAIDGALSAVSESHALCAGRIACASGADRAKVEMQLAQVGMAPYFEGRVFSGHELPRSKPFPDVYLAAAAALGVEPARCLVIEDTVTGVTAGVAAGATVWGYFPADQGHASAEQLLEAGASCVFGDMGELPAMLRAIGQASASA</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-01-19" version="58" xmlns="http://uniprot.org/uniprot">
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    <name>A9C1H9_DELAS</name>
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        <submittedName>
            <fullName evidence="2">GCN5-related N-acetyltransferase</fullName>
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    <organism evidence="2 3">
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        <lineage>
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    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
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                <person name="Fischer K."/>
                <person name="Cook A.M."/>
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            <dbReference type="PubMed" id="15240283"/>
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        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
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        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
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    </dbReference>
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    </dbReference>
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        <property type="entry name" value="Acetyltransf_1"/>
        <property type="match status" value="1"/>
    </dbReference>
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        <property type="match status" value="1"/>
    </dbReference>
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        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="N-acetyltransferase" evidence="1">
        <location>
            <begin position="29"/>
            <end position="192"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS51186"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX38642.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="192" mass="21146" checksum="C5A56933E64792DC" modified="2008-01-15" version="1">MGHRLPWRACHRRSNDLSMSSPPPLAGRFHVRALTAADLSDLLHIQLACYGADYAESGEVFARRLASAANCSLALEQGGRVRAYLAAYRSRMAKITPLHGDFEAVEQADTLYLHDMAVHPDAAGQGLARALLAPLWDRARAEGLRHTALVSVQGSRGYWERHGYAVQALVNPLQQQRLDSYGDGALYMVRPL</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="56" xmlns="http://uniprot.org/uniprot">
    <accession>A9C1L0</accession>
    <name>A9C1L0_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="6">GDT1 family protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="7" type="ordered locus">Daci_6045</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
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                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="8" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1 6">Membrane</location>
            <topology evidence="1 6">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2 6">Belongs to the GDT1 family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX38673.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_6045"/>
    <dbReference type="PRIDE" id="A9C1L0"/>
    <dbReference type="EnsemblBacteria" id="ABX38673">
        <property type="protein sequence ID" value="ABX38673"/>
        <property type="gene ID" value="Daci_6045"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_6045"/>
    <dbReference type="eggNOG" id="COG2119">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_040186_2_1_4"/>
    <dbReference type="OMA" id="PDKMDDD"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001727">
        <property type="entry name" value="Gdt1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR12608">
        <property type="entry name" value="PTHR12608"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01169">
        <property type="entry name" value="UPF0016"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5 6" id="KW-0472">Membrane</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 6" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="4 6" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="49"/>
            <end position="73"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="79"/>
            <end position="97"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="109"/>
            <end position="125"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="145"/>
            <end position="166"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="178"/>
            <end position="197"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00009190"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="RuleBase" id="RU365102"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="ABX38673.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="204" mass="22019" checksum="E960DFD5835689EF" modified="2008-01-15" version="1">MRALSGRINPHTMEAFLISTSVVALAEMGDKTQLLSLVLAARFRKPWPIVAGIFVATLVNHALAGAVGAWITSYLGENAMRWILGLSFIAMAIWMLIPDKLDEDEVSGHSRWGVFGTTLVAFFLAEMGDKTQIATVMLAAKYNAYLWVVAGTTLGMMLANAPVVWLGDKLVKRVPIRLVHVVSAVIFLVLGVLALFLPGTGVLA</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="101" xmlns="http://uniprot.org/uniprot">
    <accession>A9C1M0</accession>
    <name>A9C1M0_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="7">tRNA modification GTPase MnmE</fullName>
            <ecNumber evidence="7">3.6.-.-</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="7" type="primary">mnmE</name>
        <name evidence="7" type="synonym">trmE</name>
        <name evidence="10" type="ordered locus">Daci_6055</name>
    </gene>
    <organism evidence="10 11">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="10 11" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="11">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="11" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="11">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="7">Exhibits a very high intrinsic GTPase hydrolysis rate. Involved in the addition of a carboxymethylaminomethyl (cmnm) group at the wobble position (U34) of certain tRNAs, forming tRNA-cmnm(5)s(2)U34.</text>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="7">
            <name>K(+)</name>
            <dbReference type="ChEBI" id="CHEBI:29103"/>
        </cofactor>
        <text evidence="7">Binds 1 potassium ion per subunit.</text>
    </comment>
    <comment type="subunit">
        <text evidence="7">Homodimer. Heterotetramer of two MnmE and two MnmG subunits.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="7">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="1 7 8">Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. TrmE GTPase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="7">Lacks conserved residue(s) required for the propagation of feature annotation.</text>
    </comment>
    <dbReference type="EC" id="3.6.-.-" evidence="7"/>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX38683.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012207852.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_6055"/>
    <dbReference type="PRIDE" id="A9C1M0"/>
    <dbReference type="EnsemblBacteria" id="ABX38683">
        <property type="protein sequence ID" value="ABX38683"/>
        <property type="gene ID" value="Daci_6055"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_6055"/>
    <dbReference type="eggNOG" id="COG0486">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_019624_4_1_4"/>
    <dbReference type="OMA" id="CEIQCHG"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005525">
        <property type="term" value="F:GTP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003924">
        <property type="term" value="F:GTPase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006400">
        <property type="term" value="P:tRNA modification"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd04164">
        <property type="entry name" value="trmE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.120.430">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.1360.120">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00379">
        <property type="entry name" value="GTPase_MnmE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR031168">
        <property type="entry name" value="G_TrmE"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006073">
        <property type="entry name" value="GTP-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018948">
        <property type="entry name" value="GTP-bd_TrmE_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004520">
        <property type="entry name" value="GTPase_MnmE"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027368">
        <property type="entry name" value="MnmE_dom2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025867">
        <property type="entry name" value="MnmE_helical"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005225">
        <property type="entry name" value="Small_GTP-bd_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027266">
        <property type="entry name" value="TrmE/GcvT_dom1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01926">
        <property type="entry name" value="MMR_HSR1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12631">
        <property type="entry name" value="MnmE_helical"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF10396">
        <property type="entry name" value="TrmE_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00326">
        <property type="entry name" value="GTP1OBG"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00450">
        <property type="entry name" value="mnmE_trmE_thdF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00231">
        <property type="entry name" value="small_GTP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51709">
        <property type="entry name" value="G_TRME"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="7" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="6 7 8" id="KW-0342">GTP-binding</keyword>
    <keyword evidence="4 7" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="7" id="KW-0460">Magnesium</keyword>
    <keyword evidence="7" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="3 7 8" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="5 7" id="KW-0630">Potassium</keyword>
    <keyword evidence="11" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 7 8" id="KW-0819">tRNA processing</keyword>
    <feature type="domain" description="TrmE-type G" evidence="9">
        <location>
            <begin position="230"/>
            <end position="395"/>
        </location>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <position position="25"/>
        </location>
        <ligand>
            <name>(6S)-5-formyl-5,6,7,8-tetrahydrofolate</name>
            <dbReference type="ChEBI" id="CHEBI:57457"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <position position="82"/>
        </location>
        <ligand>
            <name>(6S)-5-formyl-5,6,7,8-tetrahydrofolate</name>
            <dbReference type="ChEBI" id="CHEBI:57457"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <position position="134"/>
        </location>
        <ligand>
            <name>(6S)-5-formyl-5,6,7,8-tetrahydrofolate</name>
            <dbReference type="ChEBI" id="CHEBI:57457"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <begin position="240"/>
            <end position="245"/>
        </location>
        <ligand>
            <name>GTP</name>
            <dbReference type="ChEBI" id="CHEBI:37565"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <position position="240"/>
        </location>
        <ligand>
            <name>K(+)</name>
            <dbReference type="ChEBI" id="CHEBI:29103"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <position position="244"/>
        </location>
        <ligand>
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <begin position="259"/>
            <end position="265"/>
        </location>
        <ligand>
            <name>GTP</name>
            <dbReference type="ChEBI" id="CHEBI:37565"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <position position="259"/>
        </location>
        <ligand>
            <name>K(+)</name>
            <dbReference type="ChEBI" id="CHEBI:29103"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <position position="261"/>
        </location>
        <ligand>
            <name>K(+)</name>
            <dbReference type="ChEBI" id="CHEBI:29103"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <position position="264"/>
        </location>
        <ligand>
            <name>K(+)</name>
            <dbReference type="ChEBI" id="CHEBI:29103"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <position position="265"/>
        </location>
        <ligand>
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <begin position="284"/>
            <end position="287"/>
        </location>
        <ligand>
            <name>GTP</name>
            <dbReference type="ChEBI" id="CHEBI:37565"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <begin position="376"/>
            <end position="378"/>
        </location>
        <ligand>
            <name>GTP</name>
            <dbReference type="ChEBI" id="CHEBI:37565"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <position position="473"/>
        </location>
        <ligand>
            <name>(6S)-5-formyl-5,6,7,8-tetrahydrofolate</name>
            <dbReference type="ChEBI" id="CHEBI:57457"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00011043"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022694"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022958"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023134"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00379"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="RuleBase" id="RU003313"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="9">
        <source>
            <dbReference type="PROSITE" id="PS51709"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="EMBL" id="ABX38683.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="473" mass="50573" checksum="C4766D80287D0220" modified="2008-01-15" version="1">MLPRHNDPIAAIATAPGRGAVGIVRVSGKGVAPLVRALCGRDLKPREATYLPFRDAQGGPIDHGLALFFPAPHSYTGEDVLELQAHGGPVVLQLLLARCLEAAQDPREGHRSVLPGLRLAQPGEFTERAFLNDKIDLAQAEAIADLIDASTEAAARSASRSLSGAFSEEIHGLRDALVHLRMLVEATLDFPEEEIDFLQKADASGQLARLRGKLDQVLSRAHQGALLREGIKVVIAGQPNAGKSSLLNALAGAELAIVTPIAGTTRDKVQQTIQIEGVPLHVIDTAGLRESSDEVERIGIARAWDEIAAADAVLFLHDLTRMGEHDYLAADAAIAETLAQKLPRQVPVIDVWNKTDRAEPARMQEHGGREGSVALSARTGDGLDALRRRLLDVAGWQSAPEGLYLARARHVEALQAVAAHLQEAELQLAAQAAHLDLLAEELRLAQVSLNSITGEFSSDDLLGVIFSSFCIGK</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="84" xmlns="http://uniprot.org/uniprot">
    <accession>A9C235</accession>
    <name>A9C235_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Transcriptional regulator, LysR family</fullName>
            <ecNumber evidence="3">4.2.1.1</ecNumber>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Daci_3033</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="4" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the LysR transcriptional regulatory family.</text>
    </comment>
    <dbReference type="EC" id="4.2.1.1" evidence="3"/>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX35671.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_3033"/>
    <dbReference type="PRIDE" id="A9C235"/>
    <dbReference type="EnsemblBacteria" id="ABX35671">
        <property type="protein sequence ID" value="ABX35671"/>
        <property type="gene ID" value="Daci_3033"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_3033"/>
    <dbReference type="eggNOG" id="COG0583">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_039613_16_1_4"/>
    <dbReference type="OMA" id="DEANCFR"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004089">
        <property type="term" value="F:carbonate dehydratase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003700">
        <property type="term" value="F:DNA-binding transcription factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005119">
        <property type="entry name" value="LysR_subst-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000847">
        <property type="entry name" value="Tscrpt_reg_HTH_LysR"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036390">
        <property type="entry name" value="WH_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00126">
        <property type="entry name" value="HTH_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03466">
        <property type="entry name" value="LysR_substrate"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46785">
        <property type="entry name" value="SSF46785"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50931">
        <property type="entry name" value="HTH_LYSR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-0456">Lyase</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HTH lysR-type" evidence="2">
        <location>
            <begin position="10"/>
            <end position="67"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00009437"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS50931"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ABX35671.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="305" mass="33740" checksum="BC45C46FAEA841CD" modified="2008-01-15" version="1">MSAMKERRLDSLNGFVVFVQVAETRSFVAAGRLLGISASAIGKSVARLEDRLGVRLFHRSTRSITLTAEGTLFLERSRRILAEIEAAQLELSQASTAPRGRLRVSLPLVSSLVLPVLGEFMRAYPEIELDLDFTDQLVDVIEDGFDAVVRTGAPADSRLSARRLGAFGYLLVASPGYLAQRGTPRVPEDLLQHSCLHYRYPHSGKLEPWVLRRAAGAPELQLPTSMICNNIETRLCFALQGLGIAYLPEFSIREPLADGRLQPVLADCMEHTNVFHVLWPASKHPSPKLRALVDFLCARVFPQQA</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="31" xmlns="http://uniprot.org/uniprot">
    <accession>A9C2A3</accession>
    <name>A9C2A3_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Daci_3409</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="2" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX36047.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012205247.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_3409"/>
    <dbReference type="PRIDE" id="A9C2A3"/>
    <dbReference type="EnsemblBacteria" id="ABX36047">
        <property type="protein sequence ID" value="ABX36047"/>
        <property type="gene ID" value="Daci_3409"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_3409"/>
    <dbReference type="HOGENOM" id="CLU_2698538_0_0_4"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ABX36047.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="73" mass="8352" checksum="E14049AA878A2B32" modified="2008-01-15" version="1">MIYPDLDSLVQRANRQLDGMTINRDQFSRDAIALAGELQRWREAHARLEATRPVGQGHPFDGVFKDLFKGQAR</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="71" xmlns="http://uniprot.org/uniprot">
    <accession>A9C2G2</accession>
    <name>A9C2G2_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="3">EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase)</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Daci_3470</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="4" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX36106.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_3470"/>
    <dbReference type="PRIDE" id="A9C2G2"/>
    <dbReference type="EnsemblBacteria" id="ABX36106">
        <property type="protein sequence ID" value="ABX36106"/>
        <property type="gene ID" value="Daci_3470"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_3470"/>
    <dbReference type="eggNOG" id="COG0766">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_027387_0_1_4"/>
    <dbReference type="OMA" id="NYMVQDL"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016765">
        <property type="term" value="F:transferase activity, transferring alkyl or aryl (other than methyl) groups"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.65.10.10">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001986">
        <property type="entry name" value="Enolpyruvate_Tfrase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036968">
        <property type="entry name" value="Enolpyruvate_Tfrase_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013792">
        <property type="entry name" value="RNA3'P_cycl/enolpyr_Trfase_a/b"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00275">
        <property type="entry name" value="EPSP_synthase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55205">
        <property type="entry name" value="SSF55205"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1 3" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="EPSP_synthase" evidence="2">
        <location>
            <begin position="39"/>
            <end position="452"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF00275"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ABX36106.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="465" mass="50737" checksum="24CEF1808B822EA9" modified="2008-01-15" version="1">MKQWACAAAARPAGSPATLESRVVLSLLALHPMSNLIVHGGTPLRGRVVPSANKNAVLPILCATLLTDQPLRLHGVPDITDVRKILDIFRTLGSEVQLDEATRTLQLHHRDTRFDASSHRLPEEMRSSIMLVPPLLARFGVARLEDNVKGCTLGVREIDPHVDIFRSFGGEVERASGSLLIHSAAPLKAVRHWLDYASVTATENFVLCAVAAQGESMLTNAACEPHVQEFCRFMVMMGADIDGIGTSRLTVRGGAPLGGGDFTFEEDFHEITTFLALGAITGGDVEVRNSTPDNFPLIDRTFAKFGVQVEHKNGWSRALRSGPLKVQTPFTSNVLTKVEAAPWPYFPVDLLPIFIALGVHAQGNALFWNKIYDGALGWTGELSKFGAHVFSSDPHRVVTFGGNPLTPAVVESPYIIRVAIALFMVASSIEGRSEIRNATPIRRAHPHFVENLRSLGARVEWTNEE</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="62" xmlns="http://uniprot.org/uniprot">
    <accession>A9C2G7</accession>
    <name>A9C2G7_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="6">Methyl-accepting chemotaxis sensory transducer</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ordered locus">Daci_3475</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="7" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the methyl-accepting chemotaxis (MCP) protein family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX36111.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012205311.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_3475"/>
    <dbReference type="PRIDE" id="A9C2G7"/>
    <dbReference type="EnsemblBacteria" id="ABX36111">
        <property type="protein sequence ID" value="ABX36111"/>
        <property type="gene ID" value="Daci_3475"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_3475"/>
    <dbReference type="eggNOG" id="COG0840">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="eggNOG" id="COG3850">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_000445_107_16_4"/>
    <dbReference type="OMA" id="VEAQACA"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004888">
        <property type="term" value="F:transmembrane signaling receptor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006935">
        <property type="term" value="P:chemotaxis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0007165">
        <property type="term" value="P:signal transduction"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004090">
        <property type="entry name" value="Chemotax_Me-accpt_rcpt"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003660">
        <property type="entry name" value="HAMP_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004089">
        <property type="entry name" value="MCPsignal_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00672">
        <property type="entry name" value="HAMP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00015">
        <property type="entry name" value="MCPsignal"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00260">
        <property type="entry name" value="CHEMTRNSDUCR"/>
    </dbReference>
    <dbReference type="SMART" id="SM00304">
        <property type="entry name" value="HAMP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00283">
        <property type="entry name" value="MA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50111">
        <property type="entry name" value="CHEMOTAXIS_TRANSDUC_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50885">
        <property type="entry name" value="HAMP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-0472">Membrane</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0807">Transducer</keyword>
    <keyword evidence="3" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="3" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="3">
        <location>
            <begin position="12"/>
            <end position="32"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="3">
        <location>
            <begin position="189"/>
            <end position="209"/>
        </location>
    </feature>
    <feature type="domain" description="HAMP" evidence="5">
        <location>
            <begin position="211"/>
            <end position="263"/>
        </location>
    </feature>
    <feature type="domain" description="Methyl-accepting transducer" evidence="4">
        <location>
            <begin position="268"/>
            <end position="497"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00029447"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00284"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="PROSITE" id="PS50111"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="PROSITE" id="PS50885"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="ABX36111.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="520" mass="54868" checksum="F9FB812036E7EAC2" modified="2008-01-15" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="74" xmlns="http://uniprot.org/uniprot">
    <accession>A9C2H9</accession>
    <name>A9C2H9_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Transcriptional regulator, MarR family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_3696</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX36328.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_3696"/>
    <dbReference type="PRIDE" id="A9C2H9"/>
    <dbReference type="EnsemblBacteria" id="ABX36328">
        <property type="protein sequence ID" value="ABX36328"/>
        <property type="gene ID" value="Daci_3696"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_3696"/>
    <dbReference type="eggNOG" id="COG1846">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_083287_4_4_4"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003700">
        <property type="term" value="F:DNA-binding transcription factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000835">
        <property type="entry name" value="HTH_MarR-typ"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023187">
        <property type="entry name" value="Tscrpt_reg_MarR-type_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036390">
        <property type="entry name" value="WH_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01047">
        <property type="entry name" value="MarR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00598">
        <property type="entry name" value="HTHMARR"/>
    </dbReference>
    <dbReference type="SMART" id="SM00347">
        <property type="entry name" value="HTH_MARR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46785">
        <property type="entry name" value="SSF46785"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01117">
        <property type="entry name" value="HTH_MARR_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50995">
        <property type="entry name" value="HTH_MARR_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HTH marR-type" evidence="1">
        <location>
            <begin position="1"/>
            <end position="151"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS50995"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX36328.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="151" mass="16901" checksum="CCE1CE332FAB8AE7" modified="2008-01-15" version="1">MDTMTPAPLPLYQRPGFLLRRAHQISVGIFEEQCRPLGLTPPQYGALVLIDASPGSDQSSLARAMGFDKVTTLRLVRGLEEREYVHRALSTRDRRQHELTLTDKGRALLAASVPLVDQAYHRLVSRWKTASCRSCCACWPSWSPAWAPMPA</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-05-25" version="52" xmlns="http://uniprot.org/uniprot">
    <accession>A9C2N1</accession>
    <name>A9C2N1_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Branched-chain amino acid transport</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_3748</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX36380.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012205574.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_3748"/>
    <dbReference type="EnsemblBacteria" id="ABX36380">
        <property type="protein sequence ID" value="ABX36380"/>
        <property type="gene ID" value="Daci_3748"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_3748"/>
    <dbReference type="eggNOG" id="COG4541">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_152361_0_0_4"/>
    <dbReference type="OMA" id="FTRVIGY"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008407">
        <property type="entry name" value="Brnchd-chn_aa_trnsp_AzlD"/>
    </dbReference>
    <dbReference type="Pfam" id="PF05437">
        <property type="entry name" value="AzlD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="6"/>
            <end position="27"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="39"/>
            <end position="58"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="64"/>
            <end position="93"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX36380.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="98" mass="10526" checksum="318B9D97E2FDA6B6" modified="2008-01-15" version="1">MEATTLLTLVLMACSTYFTRVIGYLLLRGRTLSPRMQYVMESLPGCVLISVIAPAFVSERPADLLALVVTLVAASRLPILPTVLIGIASAGALRHWLG</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2021-06-02" version="33" xmlns="http://uniprot.org/uniprot">
    <accession>A9C2V7</accession>
    <name>A9C2V7_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Daci_4130</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="2" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX36761.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012205943.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_4130"/>
    <dbReference type="EnsemblBacteria" id="ABX36761">
        <property type="protein sequence ID" value="ABX36761"/>
        <property type="gene ID" value="Daci_4130"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_4130"/>
    <dbReference type="eggNOG" id="ENOG5033JZT">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_882015_0_0_4"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ABX36761.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="315" mass="33328" checksum="7E6EBAFBABF6E247" modified="2008-01-15" version="1">MTATKIQPGDDLHLTSLMSPHSLNFVTGADRAALLAYGRDVFAAARNSKCLDQIEEPAAPAAVAPRGEYPHEQMDAMALDRYKVVPSNASMLWSHAVVAGDGTQQLYVGREVECQNMARKFAGAFLDGAFAFHSTAAAPTAPAAPALEAPAAPARIVADALIRLDAIYREEADCDEPPRRPDWLASALHLAAAAPQAPAAPSEPVYQISQPYHTDPKNTWRDASEAAYDVSVPARRRVLSTGPAAPAAPAVDASSDTALLDAMQRHRIALVPEFEGPWDAEIFNDEAEAHPIASGNTPREALRAAIAAQAAAKGS</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="65" xmlns="http://uniprot.org/uniprot">
    <accession>A9C359</accession>
    <name>A9C359_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Transcriptional regulator, BadM/Rrf2 family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Daci_4541</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="2" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX37170.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012206340.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_4541"/>
    <dbReference type="PRIDE" id="A9C359"/>
    <dbReference type="EnsemblBacteria" id="ABX37170">
        <property type="protein sequence ID" value="ABX37170"/>
        <property type="gene ID" value="Daci_4541"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_4541"/>
    <dbReference type="eggNOG" id="COG1959">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_107144_4_0_4"/>
    <dbReference type="OMA" id="GCLVEQA"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000944">
        <property type="entry name" value="Tscrpt_reg_Rrf2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036390">
        <property type="entry name" value="WH_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33221">
        <property type="entry name" value="PTHR33221"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02082">
        <property type="entry name" value="Rrf2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46785">
        <property type="entry name" value="SSF46785"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51197">
        <property type="entry name" value="HTH_RRF2_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ABX37170.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="161" mass="17206" checksum="7FE58E790220DC1C" modified="2008-01-15" version="1">MKQNSQFSDVLHVLLHMAEGDGPATSDMLAAALQTNPVVLRRLMSGLRDAGLVTSAKGHGGGWVLSCELDRTTLRDVHEALGAPGLVALGFREDRPECLVAQAVNEALSDAVQQAEAALLARLGTVTLAALSHDFHARLARHRAAGGQGWHQLQEHSHETR</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="78" xmlns="http://uniprot.org/uniprot">
    <accession>A9C399</accession>
    <name>A9C399_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Short-chain dehydrogenase/reductase SDR</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Daci_4581</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="2" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX37210.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012206380.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_4581"/>
    <dbReference type="PRIDE" id="A9C399"/>
    <dbReference type="EnsemblBacteria" id="ABX37210">
        <property type="protein sequence ID" value="ABX37210"/>
        <property type="gene ID" value="Daci_4581"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_4581"/>
    <dbReference type="eggNOG" id="COG1028">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_010194_1_1_4"/>
    <dbReference type="OMA" id="MTLYPSQ"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016491">
        <property type="term" value="F:oxidoreductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036291">
        <property type="entry name" value="NAD(P)-bd_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020904">
        <property type="entry name" value="Sc_DH/Rdtase_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002347">
        <property type="entry name" value="SDR_fam"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00081">
        <property type="entry name" value="GDHRDH"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00080">
        <property type="entry name" value="SDRFAMILY"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51735">
        <property type="entry name" value="SSF51735"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00061">
        <property type="entry name" value="ADH_SHORT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ABX37210.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="254" mass="26307" checksum="75F4A27331AB261C" modified="2008-01-15" version="1">MSAAGLERDFDGRTALVTGGAGGIGLAIARQLAEGGARVVLLDLERQALDVAAASLAEPRHHLALEVDVTRPEGVEQAVATVLEATGRIDILVNSAGVALLEPAGEVSEAAWDRTLAVNLTAPLLLAQAVAPAMRRQRHGRIINLASQASVVALRRHAAYCASKAGLVGLTRVLALEWASDGITVNAISPTVVDTPLGRKAWAGQVGEAMRALIPTGRFAQPEEVARLAVFLAGTHAGMLTGENIVIDGGYSIQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="65" xmlns="http://uniprot.org/uniprot">
    <accession>A9C3G6</accession>
    <name>A9C3G6_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Periplasmic binding protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Daci_4648</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="4" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX37277.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012206447.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_4648"/>
    <dbReference type="PRIDE" id="A9C3G6"/>
    <dbReference type="EnsemblBacteria" id="ABX37277">
        <property type="protein sequence ID" value="ABX37277"/>
        <property type="gene ID" value="Daci_4648"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_4648"/>
    <dbReference type="eggNOG" id="COG0614">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_038034_13_1_4"/>
    <dbReference type="OMA" id="RPRVYYG"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002491">
        <property type="entry name" value="ABC_transptr_periplasmic_BD"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006311">
        <property type="entry name" value="TAT_signal"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01497">
        <property type="entry name" value="Peripla_BP_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50983">
        <property type="entry name" value="FE_B12_PBP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51318">
        <property type="entry name" value="TAT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="1">
        <location>
            <begin position="1"/>
            <end position="29"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5002736254" evidence="1">
        <location>
            <begin position="30"/>
            <end position="353"/>
        </location>
    </feature>
    <feature type="domain" description="Fe/B12 periplasmic-binding" evidence="2">
        <location>
            <begin position="49"/>
            <end position="315"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS50983"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ABX37277.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="353" mass="37882" checksum="A76626789B8DB57D" modified="2008-01-15" version="1">MTDLLFTRRRWLGQAMAALASSALVPGHAQTTTIAARIGQIPDATKLRRVFAAGPPAGVLVATLAPHKLLGWPQQLDDVSRSYLGPTLQALPHLGRLSGRGSTMPLESLLKLQPDLVLDAGTADATYISTTERLARQTGLPCVLIQGSLADHARQLREVGALLGEAARGETLARHADAVAALAQRATQGMAPAERPRVYFARSANGLETGLAGSINVEAVEYAGGRNVATDAGRGGLTRVSMEQILAWDPQVIVTQEPGLAERMRQDPLWRGVAAVRSGRVHCAPVWPFGWLDGPPGVNRLIGVRWLLEKLHPQAPALQGLPPLEREVRDFYRLFYGADLSPAALGRLMETAR</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="52" xmlns="http://uniprot.org/uniprot">
    <accession>A9C3I1</accession>
    <name>A9C3I1_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Putative neutral zinc metallopeptidase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_4663</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX37292.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="PRIDE" id="A9C3I1"/>
    <dbReference type="EnsemblBacteria" id="ABX37292">
        <property type="protein sequence ID" value="ABX37292"/>
        <property type="gene ID" value="Daci_4663"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_4663"/>
    <dbReference type="eggNOG" id="COG2856">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_096433_0_0_4"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010359">
        <property type="entry name" value="IrrE_HExxH"/>
    </dbReference>
    <dbReference type="Pfam" id="PF06114">
        <property type="entry name" value="Peptidase_M78"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Peptidase_M78" evidence="1">
        <location>
            <begin position="87"/>
            <end position="163"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF06114"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX37292.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="182" mass="20351" checksum="EC8DCFCCC5EF7621" modified="2008-01-15" version="1">MSYAKLETVADGLRPLLPRIVRQGRAIEAIDCLKVLEQTLPKAGYNYMYVSVEELNDCAAFTIPERHVVVLREDVYEGLFADDVFARSTVIHELSHIVLEHAVTLHRGAVLGEHRFCEDSEWQAKALTAALMMPASLCQEARSAHELAQLCGTSTQAARYRLSKLVERKVIAPKLEIGLFDT</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="68" xmlns="http://uniprot.org/uniprot">
    <accession>A9C3I8</accession>
    <name>A9C3I8_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="2 6">Lysozyme</fullName>
            <ecNumber evidence="2 6">3.2.1.17</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="7" type="ordered locus">Daci_4670</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="8" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="1 6">
            <text>Hydrolysis of (1-&gt;4)-beta-linkages between N-acetylmuramic acid and N-acetyl-D-glucosamine residues in a peptidoglycan and between N-acetyl-D-glucosamine residues in chitodextrins.</text>
            <dbReference type="EC" id="3.2.1.17"/>
        </reaction>
    </comment>
    <comment type="similarity">
        <text evidence="6">Belongs to the glycosyl hydrolase 24 family.</text>
    </comment>
    <dbReference type="EC" id="3.2.1.17" evidence="2 6"/>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX37299.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012206469.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_4670"/>
    <dbReference type="CAZy" id="GH24">
        <property type="family name" value="Glycoside Hydrolase Family 24"/>
    </dbReference>
    <dbReference type="PRIDE" id="A9C3I8"/>
    <dbReference type="EnsemblBacteria" id="ABX37299">
        <property type="protein sequence ID" value="ABX37299"/>
        <property type="gene ID" value="Daci_4670"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_4670"/>
    <dbReference type="eggNOG" id="COG3772">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_111497_0_0_4"/>
    <dbReference type="OMA" id="EICREWR"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003796">
        <property type="term" value="F:lysozyme activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016998">
        <property type="term" value="P:cell wall macromolecule catabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0019835">
        <property type="term" value="P:cytolysis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0042742">
        <property type="term" value="P:defense response to bacterium"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009253">
        <property type="term" value="P:peptidoglycan catabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.530.40">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002196">
        <property type="entry name" value="Glyco_hydro_24"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023346">
        <property type="entry name" value="Lysozyme-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023347">
        <property type="entry name" value="Lysozyme_dom_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00959">
        <property type="entry name" value="Phage_lysozyme"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53955">
        <property type="entry name" value="SSF53955"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3 6" id="KW-0929">Antimicrobial</keyword>
    <keyword evidence="4 6" id="KW-0081">Bacteriolytic enzyme</keyword>
    <keyword evidence="6" id="KW-0326">Glycosidase</keyword>
    <keyword evidence="5 6 7" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00000632"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00012732"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022529"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022638"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="RuleBase" id="RU003788"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="ABX37299.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="203" mass="22171" checksum="05C06C7BB9451C8C" modified="2008-01-15" version="1">MNEALRNRLLAAAAGLAVTAAGGYVATKEAGPSAAVTLAREIGLYYESSGRHIGTPYIDRLGKGQPLTVCAGVTGPEVVAERYYTTEDCERLERPKYREAERLARRALRHWDAYNVWVQASFIDMAYNVPSALSPDTTVMRLANAGQLNAACEQMPRWVYGTVNGVPTRLPGLVDRRDATRELCAQWGRDGHFSAGLLARASQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="66" xmlns="http://uniprot.org/uniprot">
    <accession>A9C3M2</accession>
    <name>A9C3M2_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="4">D12 class N6 adenine-specific DNA methyltransferase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ordered locus">Daci_4704</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="5" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX37333.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012206503.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_4704"/>
    <dbReference type="REBASE" id="16646">
        <property type="entry name" value="M.DacSPHORF4704P"/>
    </dbReference>
    <dbReference type="PRIDE" id="A9C3M2"/>
    <dbReference type="EnsemblBacteria" id="ABX37333">
        <property type="protein sequence ID" value="ABX37333"/>
        <property type="gene ID" value="Daci_4704"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_4704"/>
    <dbReference type="eggNOG" id="COG0338">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_063430_1_1_4"/>
    <dbReference type="OMA" id="WMVSYND"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009007">
        <property type="term" value="F:site-specific DNA-methyltransferase (adenine-specific) activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.150">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012263">
        <property type="entry name" value="M_m6A_EcoRV"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012327">
        <property type="entry name" value="MeTrfase_D12"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029063">
        <property type="entry name" value="SAM-dependent_MTases_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30481">
        <property type="entry name" value="PTHR30481"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02086">
        <property type="entry name" value="MethyltransfD12"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF000398">
        <property type="entry name" value="M_m6A_EcoRV"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00505">
        <property type="entry name" value="D12N6MTFRASE"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53335">
        <property type="entry name" value="SSF53335"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1 4" id="KW-0489">Methyltransferase</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0949">S-adenosyl-L-methionine</keyword>
    <keyword evidence="2 4" id="KW-0808">Transferase</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022603"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022691"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="ABX37333.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="286" mass="32087" checksum="2214897F7F2318FF" modified="2008-01-15" version="1">MPQVTSPALRYHGAKFRLAPWVLQHFPTHRCYVEPFGGAAGVLLQKPRAYAEVYNDLDDDIANFFRVLRDPGQSERLIQLLHLTPYARAEFDLSYQDCEEPVERARRTAVRACMGFGSAGATKGVTGFRIDTARPYGTAQHLWSRYPGQLPPIIERLQGVLIENRPAVEVMQQHDTADTLHFVDPPYVFGTRSLRNVTQGCYRHEMTDEQHIELLGVLRGLRGMVVLSGYPSELYERELADWQVHTTGARISAGRGTAVKTEVLWLNPACQQHLAAPPAVQQALGI</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="77" xmlns="http://uniprot.org/uniprot">
    <accession>A9BLH5</accession>
    <name>A9BLH5_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="4">CheB methylesterase</fullName>
            <ecNumber evidence="4">3.1.1.61</ecNumber>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ordered locus">Daci_3829</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="5" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EC" id="3.1.1.61" evidence="4"/>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX36460.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012205654.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_3829"/>
    <dbReference type="PRIDE" id="A9BLH5"/>
    <dbReference type="EnsemblBacteria" id="ABX36460">
        <property type="protein sequence ID" value="ABX36460"/>
        <property type="gene ID" value="Daci_3829"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_3829"/>
    <dbReference type="eggNOG" id="COG2201">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_000445_51_2_4"/>
    <dbReference type="OMA" id="PGYHLSV"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000156">
        <property type="term" value="F:phosphorelay response regulator activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008984">
        <property type="term" value="F:protein-glutamate methylesterase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006935">
        <property type="term" value="P:chemotaxis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.180">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035909">
        <property type="entry name" value="CheB_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000673">
        <property type="entry name" value="Sig_transdc_resp-reg_Me-estase"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01339">
        <property type="entry name" value="CheB_methylest"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52738">
        <property type="entry name" value="SSF52738"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50122">
        <property type="entry name" value="CHEB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0145">Chemotaxis</keyword>
    <keyword evidence="2 4" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="1" id="KW-0597">Phosphoprotein</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="CheB-type methylesterase" evidence="3">
        <location>
            <begin position="12"/>
            <end position="197"/>
        </location>
    </feature>
    <feature type="active site" evidence="2">
        <location>
            <position position="24"/>
        </location>
    </feature>
    <feature type="active site" evidence="2">
        <location>
            <position position="51"/>
        </location>
    </feature>
    <feature type="active site" evidence="2">
        <location>
            <position position="144"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022553"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00050"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="PROSITE" id="PS50122"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="ABX36460.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="204" mass="21177" checksum="CF28E0B08D72523F" modified="2008-01-15" version="1">MPATTNTPASDAATAYEAIVIGGSAGALDALSAVLPTLPASLRASVLVVLHLPRDRRSLLGQLFGPRCALPVREVQDQQWLEPGCLYFAPADYHLLVDSGPRLALSLDAPWHFSRPSIDVLFESAADCYGERLLAVLLSGANEDGAQGMASVHAAGGLAVVQSPDSAAMQTMPRAALARVPQAQVLAPQGIAALIASLHGQGRL</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="49" xmlns="http://uniprot.org/uniprot">
    <accession>A9BLI6</accession>
    <name>A9BLI6_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Tetratricopeptide TPR_2 repeat protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_3840</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX36471.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012205665.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_3840"/>
    <dbReference type="PRIDE" id="A9BLI6"/>
    <dbReference type="EnsemblBacteria" id="ABX36471">
        <property type="protein sequence ID" value="ABX36471"/>
        <property type="gene ID" value="Daci_3840"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_3840"/>
    <dbReference type="eggNOG" id="COG3065">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_134840_1_0_4"/>
    <dbReference type="OMA" id="LEAFSYC"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="1">
        <location>
            <begin position="1"/>
            <end position="25"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5002734858" evidence="1">
        <location>
            <begin position="26"/>
            <end position="164"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX36471.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="164" mass="18059" checksum="BBBECA7084DFE2BF" modified="2008-01-15" version="1">MSMTLNIPHSIQRLTLALAVAFGLAACETAPKPVEPEPAPTVVQPPEPVKPVDPVVIKEQELVEAIQLYVDGRYEDAITALTPLSTAQELPMSSQVKALKYIAFSHCVEGRRKPCRQHFDMALALDPTFQLTEAEKGHPIWGREFNNARAALRNKRPAPARKAS</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="66" xmlns="http://uniprot.org/uniprot">
    <accession>A9BLL4</accession>
    <name>A9BLL4_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Type VI secretion system Vgr family protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Daci_3868</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="4" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the VgrG protein family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX36499.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012205693.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_3868"/>
    <dbReference type="PRIDE" id="A9BLL4"/>
    <dbReference type="EnsemblBacteria" id="ABX36499">
        <property type="protein sequence ID" value="ABX36499"/>
        <property type="gene ID" value="Daci_3868"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_3868"/>
    <dbReference type="eggNOG" id="COG3501">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_004121_3_0_4"/>
    <dbReference type="OMA" id="NTHTIES"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.50.230">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006531">
        <property type="entry name" value="Gp5/Vgr_OB"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010609">
        <property type="entry name" value="Gp5_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017847">
        <property type="entry name" value="T6SS_RhsGE_Vgr_subset"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006533">
        <property type="entry name" value="T6SS_Vgr_RhsGE"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037026">
        <property type="entry name" value="Vgr_OB-fold_dom_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF06715">
        <property type="entry name" value="Gp5_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04717">
        <property type="entry name" value="Phage_base_V"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01646">
        <property type="entry name" value="vgr_GE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR03361">
        <property type="entry name" value="VI_Rhs_Vgr"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Phage_base_V" evidence="2">
        <location>
            <begin position="383"/>
            <end position="450"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00005558"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF04717"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ABX36499.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="730" mass="81430" checksum="6CC3A2BC6D561282" modified="2008-01-15" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="56" xmlns="http://uniprot.org/uniprot">
    <accession>A9BLP4</accession>
    <name>A9BLP4_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Daci_4202</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="2" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX36833.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012206006.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_4202"/>
    <dbReference type="EnsemblBacteria" id="ABX36833">
        <property type="protein sequence ID" value="ABX36833"/>
        <property type="gene ID" value="Daci_4202"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_4202"/>
    <dbReference type="eggNOG" id="COG4842">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_186774_0_0_4"/>
    <dbReference type="OMA" id="CKEFENN"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029013">
        <property type="entry name" value="HP0062-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010310">
        <property type="entry name" value="T7SS_ESAT-6-like"/>
    </dbReference>
    <dbReference type="Pfam" id="PF06013">
        <property type="entry name" value="WXG100"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF158414">
        <property type="entry name" value="SSF158414"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ABX36833.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="89" mass="10084" checksum="4AB271D004FD4A2A" modified="2008-01-15" version="1">MAQAIGDPEELERFAYSLQQFIDSLNDAVGNLNGAFASLGDTWQDEKRARFEEDYNALVQQLQHFNDNASEQVPYLAALAARLRDYLQS</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="65" xmlns="http://uniprot.org/uniprot">
    <accession>A9BLV1</accession>
    <name>A9BLV1_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Putative transcriptional regulator, ModE family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_4259</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX36890.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_4259"/>
    <dbReference type="PRIDE" id="A9BLV1"/>
    <dbReference type="EnsemblBacteria" id="ABX36890">
        <property type="protein sequence ID" value="ABX36890"/>
        <property type="gene ID" value="Daci_4259"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_4259"/>
    <dbReference type="eggNOG" id="COG2005">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_125440_1_1_4"/>
    <dbReference type="OMA" id="SYKRAWD"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003700">
        <property type="term" value="F:DNA-binding transcription factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000847">
        <property type="entry name" value="Tscrpt_reg_HTH_LysR"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036390">
        <property type="entry name" value="WH_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00126">
        <property type="entry name" value="HTH_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46785">
        <property type="entry name" value="SSF46785"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HTH lysR-type" evidence="1">
        <location>
            <begin position="42"/>
            <end position="103"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF00126"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX36890.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="138" mass="14472" checksum="7A13883EBC8BC990" modified="2008-01-15" version="1">MISLNLDVRFSPVPSPFPMSSKVQFRLRVYNDSTIAIGPGKVQLLEAIAEAGSISAAARSLGMSYRRAWVLVDEMNRALQTPAVNTSAGGAHGGGASLTSTGEAIVRHYRSIETTARMAAAADIAALTRLLNPQGTSA</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="54" xmlns="http://uniprot.org/uniprot">
    <accession>A9BLW7</accession>
    <name>A9BLW7_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ordered locus">Daci_4275</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="5" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Periplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the UPF0065 (bug) family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX36906.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012206078.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_4275"/>
    <dbReference type="PRIDE" id="A9BLW7"/>
    <dbReference type="EnsemblBacteria" id="ABX36906">
        <property type="protein sequence ID" value="ABX36906"/>
        <property type="gene ID" value="Daci_4275"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_4275"/>
    <dbReference type="eggNOG" id="COG3181">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_045683_0_0_4"/>
    <dbReference type="OMA" id="HFATEMF"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0042597">
        <property type="term" value="C:periplasmic space"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.190.150">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005064">
        <property type="entry name" value="BUG"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR042100">
        <property type="entry name" value="Bug_dom1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006311">
        <property type="entry name" value="TAT_signal"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR42928">
        <property type="entry name" value="PTHR42928"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03401">
        <property type="entry name" value="TctC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF017082">
        <property type="entry name" value="YflP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51318">
        <property type="entry name" value="TAT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="3">
        <location>
            <begin position="1"/>
            <end position="33"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5002732294" evidence="3">
        <location>
            <begin position="34"/>
            <end position="334"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004418"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00006987"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="ABX36906.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="334" mass="34205" checksum="A5E0E04442D9E8AE" modified="2008-01-15" version="1">MSRNFQEVRRLALRGSLLAAVGLAALGAQPALAQKDYPAKPVRLVVGFAAGGPTDVVARAFADHAGKALGQPFVVDNKPGANTIVAAQAVAGAPADGYTLLFGATNHSMIPALYQGRVKFDVVRSFRPLCTVASSPTVLVVGPGMPARSLQEYMDQARSRPGSVTAGTAGMGSSGHFATEMFARAKGLKLNHVPYKGAAPVVTDLMGGQLDSSFATLGSVLPQVRSGKLTALAVASPKRASLLPQVPTFAEAGGGDYSADVWYGVLAPAGIPDGVAQALERVAVEFAKSASAADKLHGLGMDAESSCGSAFAQRVASEAASYAQIARELNLKAD</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="54" xmlns="http://uniprot.org/uniprot">
    <accession>A9BLX2</accession>
    <name>A9BLX2_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ordered locus">Daci_4280</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="5" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Periplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the UPF0065 (bug) family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX36911.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012206083.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_4280"/>
    <dbReference type="PRIDE" id="A9BLX2"/>
    <dbReference type="EnsemblBacteria" id="ABX36911">
        <property type="protein sequence ID" value="ABX36911"/>
        <property type="gene ID" value="Daci_4280"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_4280"/>
    <dbReference type="eggNOG" id="COG3181">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_045683_0_1_4"/>
    <dbReference type="OMA" id="AGIKLRH"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0042597">
        <property type="term" value="C:periplasmic space"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.190.150">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005064">
        <property type="entry name" value="BUG"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR042100">
        <property type="entry name" value="Bug_dom1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR42928">
        <property type="entry name" value="PTHR42928"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03401">
        <property type="entry name" value="TctC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF017082">
        <property type="entry name" value="YflP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="3">
        <location>
            <begin position="1"/>
            <end position="32"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5002734869" evidence="3">
        <location>
            <begin position="33"/>
            <end position="333"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004418"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00006987"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="ABX36911.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="333" mass="34739" checksum="17FD802738E7DD4F" modified="2008-01-15" version="1">MPIPSLSRCLNARLLAVLVGVAAIVPMGAAQAQDAYPRKPIRLVVPFPPGGGTDMIARTVAQRLADHNKWTVVVDNRPGAGGNLGVDAVAKAAPDGHTLVMGQTSNLAINPSLYARLPYDPLKDLVPVALVASAPIVMAAPANSPYKTFADLVKAAKAKPDGLTLGYPGNGTVAHLAGELAENAAGIKLRHVPYKGAAQAMTDLVGGQIDFYMSAVPTLLGQVRNGKLRAVMVTSLKRSAQLPQTPTLAESGYQDFEAVTWFGVLAPAGTPQAIVQQLNKAINDALLVPEVAEKLRSEGGEVLGGSSEKFAALLRAEVPRWARIVKDSGASLD</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="96" xmlns="http://uniprot.org/uniprot">
    <accession>A9BM24</accession>
    <name>A9BM24_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="4 8 9">Nicotinate phosphoribosyltransferase</fullName>
            <shortName evidence="8">NAPRTase</shortName>
            <ecNumber evidence="4 8 9">6.3.4.21</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="8" type="primary">pncB</name>
        <name evidence="12" type="ordered locus">Daci_4740</name>
    </gene>
    <organism evidence="12 13">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="12 13" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="13">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="13" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="13">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="8 9">Catalyzes the synthesis of beta-nicotinate D-ribonucleotide from nicotinate and 5-phospho-D-ribose 1-phosphate at the expense of ATP.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1 8 9">
            <text>5-phospho-alpha-D-ribose 1-diphosphate + ATP + H2O + nicotinate = ADP + diphosphate + nicotinate beta-D-ribonucleotide + phosphate</text>
            <dbReference type="Rhea" id="RHEA:36163"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:32544"/>
            <dbReference type="ChEBI" id="CHEBI:33019"/>
            <dbReference type="ChEBI" id="CHEBI:43474"/>
            <dbReference type="ChEBI" id="CHEBI:57502"/>
            <dbReference type="ChEBI" id="CHEBI:58017"/>
            <dbReference type="ChEBI" id="CHEBI:456216"/>
            <dbReference type="EC" id="6.3.4.21"/>
        </reaction>
    </comment>
    <comment type="pathway">
        <text evidence="2 8 9">Cofactor biosynthesis; NAD(+) biosynthesis; nicotinate D-ribonucleotide from nicotinate: step 1/1.</text>
    </comment>
    <comment type="PTM">
        <text evidence="8 9">Transiently phosphorylated on a His residue during the reaction cycle. Phosphorylation strongly increases the affinity for substrates and increases the rate of nicotinate D-ribonucleotide production. Dephosphorylation regenerates the low-affinity form of the enzyme, leading to product release.</text>
    </comment>
    <comment type="similarity">
        <text evidence="3 8 9">Belongs to the NAPRTase family.</text>
    </comment>
    <dbReference type="EC" id="6.3.4.21" evidence="4 8 9"/>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX37369.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012206539.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_4740"/>
    <dbReference type="PRIDE" id="A9BM24"/>
    <dbReference type="EnsemblBacteria" id="ABX37369">
        <property type="protein sequence ID" value="ABX37369"/>
        <property type="gene ID" value="Daci_4740"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_4740"/>
    <dbReference type="eggNOG" id="COG1488">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_030991_1_0_4"/>
    <dbReference type="OMA" id="QAVFHRY"/>
    <dbReference type="UniPathway" id="UPA00253">
        <property type="reaction ID" value="UER00457"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004516">
        <property type="term" value="F:nicotinate phosphoribosyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004514">
        <property type="term" value="F:nicotinate-nucleotide diphosphorylase (carboxylating) activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009435">
        <property type="term" value="P:NAD biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd01401">
        <property type="entry name" value="PncB_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00570">
        <property type="entry name" value="NAPRTase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041525">
        <property type="entry name" value="N/Namide_PRibTrfase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR040727">
        <property type="entry name" value="NAPRTase_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006406">
        <property type="entry name" value="Nic_PRibTrfase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007229">
        <property type="entry name" value="Nic_PRibTrfase-Fam"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036068">
        <property type="entry name" value="Nicotinate_pribotase-like_C"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11098">
        <property type="entry name" value="PTHR11098"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04095">
        <property type="entry name" value="NAPRTase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF17767">
        <property type="entry name" value="NAPRTase_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF000484">
        <property type="entry name" value="NAPRT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51690">
        <property type="entry name" value="SSF51690"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01514">
        <property type="entry name" value="NAPRTase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="12" id="KW-0328">Glycosyltransferase</keyword>
    <keyword evidence="6 8 9" id="KW-0436">Ligase</keyword>
    <keyword evidence="5 8" id="KW-0597">Phosphoprotein</keyword>
    <keyword evidence="7 8 9" id="KW-0662">Pyridine nucleotide biosynthesis</keyword>
    <keyword evidence="13" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="12" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="NAPRTase_N" evidence="11">
        <location>
            <begin position="7"/>
            <end position="126"/>
        </location>
    </feature>
    <feature type="domain" description="NAPRTase" evidence="10">
        <location>
            <begin position="162"/>
            <end position="399"/>
        </location>
    </feature>
    <feature type="modified residue" description="Phosphohistidine; by autocatalysis" evidence="8">
        <location>
            <position position="223"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001240"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00004952"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00010897"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00013236"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022553"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022598"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022642"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00570"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="RuleBase" id="RU003838"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="10">
        <source>
            <dbReference type="Pfam" id="PF04095"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="11">
        <source>
            <dbReference type="Pfam" id="PF17767"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="EMBL" id="ABX37369.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="13">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="406" mass="46066" checksum="B4F4A1257E445D35" modified="2008-01-15" version="1">MIITSLLDTDLYKFTMMQVVLHQFPGAQVEYRFKCRNPGVQLAPYVNEIRAEIRSLCSLRFQDAELAYLSSLRFIKSDFVDFLSLFHLNEKCVTVQALPNGEIDITIRGPWLHTILFEIPVLAIVNEVYFRNTQPVPDFPEGRRRLDAKIALLQQPGLEQLKIADYGTRRRFSRAWHEEVLRVLCARLGRPGASAESEGQFAGTSNVLYAMKLGVRPLGTLAHEYLQACQSLGPRLRDSQIFGFESWAREYRGDLGIALSDVYGMSAFLRDFDLYFCKLFDGARHDSGDPFEWGERLLAHYRANRIDPLTKTLIFSDGLTVPRTIELFQRFHGRCQLAFGIGTNLTNDLGDAPDHVPLQIVIKMTRCNGQPVAKLSDTPGKSMCDDEKYLAYLRQVFEIAAPAAQT</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="88" xmlns="http://uniprot.org/uniprot">
    <accession>A9BM38</accession>
    <name>A9BM38_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="7">Amino acid adenylation domain protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ordered locus">Daci_4754</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="8" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>pantetheine 4'-phosphate</name>
            <dbReference type="ChEBI" id="CHEBI:47942"/>
        </cofactor>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX37383.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012206553.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="SMR" id="A9BM38"/>
    <dbReference type="STRING" id="398578.Daci_4754"/>
    <dbReference type="PRIDE" id="A9BM38"/>
    <dbReference type="EnsemblBacteria" id="ABX37383">
        <property type="protein sequence ID" value="ABX37383"/>
        <property type="gene ID" value="Daci_4754"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_4754"/>
    <dbReference type="eggNOG" id="COG1020">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_000022_11_1_4"/>
    <dbReference type="OMA" id="WNTQLRI"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003824">
        <property type="term" value="F:catalytic activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0031177">
        <property type="term" value="F:phosphopantetheine binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:1901576">
        <property type="term" value="P:organic substance biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.1200.10">
        <property type="match status" value="3"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.300.30">
        <property type="match status" value="3"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.559.10">
        <property type="match status" value="3"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.12780">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010071">
        <property type="entry name" value="AA_adenyl_domain"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036736">
        <property type="entry name" value="ACP-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025110">
        <property type="entry name" value="AMP-bd_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045851">
        <property type="entry name" value="AMP-bd_C_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020845">
        <property type="entry name" value="AMP-binding_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000873">
        <property type="entry name" value="AMP-dep_Synth/Lig"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR042099">
        <property type="entry name" value="ANL_N_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023213">
        <property type="entry name" value="CAT-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001242">
        <property type="entry name" value="Condensatn"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020806">
        <property type="entry name" value="PKS_PP-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009081">
        <property type="entry name" value="PP-bd_ACP"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006162">
        <property type="entry name" value="Ppantetheine_attach_site"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00501">
        <property type="entry name" value="AMP-binding"/>
        <property type="match status" value="3"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13193">
        <property type="entry name" value="AMP-binding_C"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00668">
        <property type="entry name" value="Condensation"/>
        <property type="match status" value="3"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00550">
        <property type="entry name" value="PP-binding"/>
        <property type="match status" value="3"/>
    </dbReference>
    <dbReference type="SMART" id="SM00823">
        <property type="entry name" value="PKS_PP"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47336">
        <property type="entry name" value="SSF47336"/>
        <property type="match status" value="3"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01733">
        <property type="entry name" value="AA-adenyl-dom"/>
        <property type="match status" value="3"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00455">
        <property type="entry name" value="AMP_BINDING"/>
        <property type="match status" value="3"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50075">
        <property type="entry name" value="CARRIER"/>
        <property type="match status" value="3"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00012">
        <property type="entry name" value="PHOSPHOPANTETHEINE"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2 4" id="KW-0596">Phosphopantetheine</keyword>
    <keyword evidence="3" id="KW-0597">Phosphoprotein</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Carrier" evidence="6">
        <location>
            <begin position="1052"/>
            <end position="1126"/>
        </location>
    </feature>
    <feature type="domain" description="Carrier" evidence="6">
        <location>
            <begin position="2118"/>
            <end position="2192"/>
        </location>
    </feature>
    <feature type="domain" description="Carrier" evidence="6">
        <location>
            <begin position="3220"/>
            <end position="3295"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="5">
        <location>
            <begin position="46"/>
            <end position="67"/>
        </location>
    </feature>
    <feature type="modified residue" description="O-(pantetheine 4'-phosphoryl)serine" evidence="4">
        <location>
            <position position="1087"/>
        </location>
    </feature>
    <feature type="modified residue" description="O-(pantetheine 4'-phosphoryl)serine" evidence="4">
        <location>
            <position position="2153"/>
        </location>
    </feature>
    <feature type="modified residue" description="O-(pantetheine 4'-phosphoryl)serine" evidence="4">
        <location>
            <position position="3255"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001957"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022450"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022553"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00258"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="PROSITE" id="PS50075"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="ABX37383.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="3331" mass="357246" checksum="64B4D3293407CC31" modified="2008-01-15" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="53" xmlns="http://uniprot.org/uniprot">
    <accession>A9BMN7</accession>
    <name>A9BMN7_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_4953</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX37582.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_4953"/>
    <dbReference type="PRIDE" id="A9BMN7"/>
    <dbReference type="EnsemblBacteria" id="ABX37582">
        <property type="protein sequence ID" value="ABX37582"/>
        <property type="gene ID" value="Daci_4953"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_4953"/>
    <dbReference type="eggNOG" id="COG2982">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_005680_1_0_4"/>
    <dbReference type="OMA" id="QQPPAEW"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.1330.60">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008023">
        <property type="entry name" value="DUF748"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036737">
        <property type="entry name" value="OmpA-like_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF05359">
        <property type="entry name" value="DUF748"/>
        <property type="match status" value="4"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="354"/>
            <end position="378"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="853"/>
            <end position="881"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX37582.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="1281" mass="137640" checksum="5CADF3A9197FD81E" modified="2008-01-15" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="59" xmlns="http://uniprot.org/uniprot">
    <accession>A9BMV1</accession>
    <name>A9BMV1_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">Ancillary SecYEG translocon subunit</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="6" type="ordered locus">Daci_5017</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="7" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="2">Belongs to the YfgM family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX37646.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012206816.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_5017"/>
    <dbReference type="PRIDE" id="A9BMV1"/>
    <dbReference type="EnsemblBacteria" id="ABX37646">
        <property type="protein sequence ID" value="ABX37646"/>
        <property type="gene ID" value="Daci_5017"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_5017"/>
    <dbReference type="eggNOG" id="COG2976">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_084785_1_1_4"/>
    <dbReference type="OMA" id="RFFANNG"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0044877">
        <property type="term" value="F:protein-containing complex binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.25.40.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011990">
        <property type="entry name" value="TPR-like_helical_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018704">
        <property type="entry name" value="TPR_21"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR026039">
        <property type="entry name" value="YfgM"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR38035">
        <property type="entry name" value="PTHR38035"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF09976">
        <property type="entry name" value="TPR_21"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF006170">
        <property type="entry name" value="YfgM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48452">
        <property type="entry name" value="SSF48452"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="1" id="KW-0143">Chaperone</keyword>
    <keyword evidence="4" id="KW-0472">Membrane</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="4" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="4">
        <location>
            <begin position="20"/>
            <end position="41"/>
        </location>
    </feature>
    <feature type="domain" description="TPR_21" evidence="5">
        <location>
            <begin position="17"/>
            <end position="209"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023186"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00024197"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00024235"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="Pfam" id="PF09976"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="ABX37646.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="227" mass="24450" checksum="0671A57CC1AF5403" modified="2008-01-15" version="1">MANHFDLEEQEQIEQLKHFWNTWGTLITGVLVVIFVGFAGWNGYQYWEKRQATQAAALAHAVDVALAGKDAARAGQAFADLKDKYAGTTQAAQAGLLLAKAAVDEGKLDDAKAALSWVADKGDEGYKALAKLRLSAVLEQQKQYDEALKALEGSMPESFAGIVADRRGDILAAQGKQAEAIDAYQRAHAALDKGVDYGRLIEFKLNALGAEPTVLAQAKTSTSEKQP</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="57" xmlns="http://uniprot.org/uniprot">
    <accession>A9BMY1</accession>
    <name>A9BMY1_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">GCN5-related N-acetyltransferase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_5047</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX37676.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_5047"/>
    <dbReference type="PRIDE" id="A9BMY1"/>
    <dbReference type="EnsemblBacteria" id="ABX37676">
        <property type="protein sequence ID" value="ABX37676"/>
        <property type="gene ID" value="Daci_5047"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_5047"/>
    <dbReference type="eggNOG" id="COG0456">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_013985_19_3_4"/>
    <dbReference type="OMA" id="CGLVWCK"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008080">
        <property type="term" value="F:N-acetyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016181">
        <property type="entry name" value="Acyl_CoA_acyltransferase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000182">
        <property type="entry name" value="GNAT_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00583">
        <property type="entry name" value="Acetyltransf_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55729">
        <property type="entry name" value="SSF55729"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51186">
        <property type="entry name" value="GNAT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="N-acetyltransferase" evidence="1">
        <location>
            <begin position="9"/>
            <end position="173"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS51186"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX37676.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="175" mass="19131" checksum="1BC61C3560C15C00" modified="2008-01-15" version="1">MSDAESSMISIRPVDPHEWPQYRDIRLRALRDAPDAFGSTWAVEAARADPDWAARLQAAAAGGRDRVLFAVNGEQACGLVWCKLCAPEPGVADLFQMWVDPAVRGRGAGQALLAQAIAWAWHKGMQRVRLGVTDADSPAMRLYLAHGFRPVGGLQPLREGCELRVQTMALDRARG</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="81" xmlns="http://uniprot.org/uniprot">
    <accession>A9BN09</accession>
    <name>A9BN09_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="6">GntR domain protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ordered locus">Daci_5075</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="7" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX37704.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_5075"/>
    <dbReference type="PRIDE" id="A9BN09"/>
    <dbReference type="EnsemblBacteria" id="ABX37704">
        <property type="protein sequence ID" value="ABX37704"/>
        <property type="gene ID" value="Daci_5075"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_5075"/>
    <dbReference type="eggNOG" id="COG2186">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_017584_9_1_4"/>
    <dbReference type="OMA" id="TWQEHRK"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003700">
        <property type="term" value="F:DNA-binding transcription factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd07377">
        <property type="entry name" value="WHTH_GntR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.120.530">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011711">
        <property type="entry name" value="GntR_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008920">
        <property type="entry name" value="TF_FadR/GntR_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000524">
        <property type="entry name" value="Tscrpt_reg_HTH_GntR"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036390">
        <property type="entry name" value="WH_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07729">
        <property type="entry name" value="FCD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00392">
        <property type="entry name" value="GntR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00035">
        <property type="entry name" value="HTHGNTR"/>
    </dbReference>
    <dbReference type="SMART" id="SM00895">
        <property type="entry name" value="FCD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00345">
        <property type="entry name" value="HTH_GNTR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46785">
        <property type="entry name" value="SSF46785"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48008">
        <property type="entry name" value="SSF48008"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50949">
        <property type="entry name" value="HTH_GNTR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0804">Transcription</keyword>
    <keyword evidence="1" id="KW-0805">Transcription regulation</keyword>
    <feature type="domain" description="HTH gntR-type" evidence="5">
        <location>
            <begin position="36"/>
            <end position="104"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="4">
        <location>
            <begin position="1"/>
            <end position="36"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023015"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023163"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="PROSITE" id="PS50949"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="ABX37704.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="262" mass="28009" checksum="51BC59676A57076F" modified="2008-01-15" version="1">MRQRCAVAKISAPAAPDPETCQRMEPSTASSPSASTAVAGNAARVIREWIEGGVYPVGALLPSQRDLSEQLGISRTSLREALSTLQGLGLVVARPGKGMYVTEATDAPASGAEAWRFADSHALTDVYQLRYALEGFVARLAALVVQPEDVAALQANLQAMQQSIELADFVQATRLDFEFHLQIATISGNHAIADVLRGSGEVMQESQRLPYYKRGARHATAEEHAAIIEALSQGRPELAQQAMATHIVQAAQRAGVHFPTGL</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="58" xmlns="http://uniprot.org/uniprot">
    <accession>A9BN50</accession>
    <name>A9BN50_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ordered locus">Daci_5116</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="5" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Periplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the UPF0065 (bug) family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX37745.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012206915.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_5116"/>
    <dbReference type="PRIDE" id="A9BN50"/>
    <dbReference type="EnsemblBacteria" id="ABX37745">
        <property type="protein sequence ID" value="ABX37745"/>
        <property type="gene ID" value="Daci_5116"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_5116"/>
    <dbReference type="eggNOG" id="COG3181">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_045683_0_1_4"/>
    <dbReference type="OMA" id="IVAYPTG"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0042597">
        <property type="term" value="C:periplasmic space"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.190.150">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005064">
        <property type="entry name" value="BUG"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR042100">
        <property type="entry name" value="Bug_dom1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006311">
        <property type="entry name" value="TAT_signal"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR42928">
        <property type="entry name" value="PTHR42928"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03401">
        <property type="entry name" value="TctC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF017082">
        <property type="entry name" value="YflP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51318">
        <property type="entry name" value="TAT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="3">
        <location>
            <begin position="1"/>
            <end position="30"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5002732931" evidence="3">
        <location>
            <begin position="31"/>
            <end position="332"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004418"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00006987"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="ABX37745.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="332" mass="34371" checksum="A6F216001B065745" modified="2008-01-15" version="1">MTDFLRRHVLVTSMLAATVAAAALPMSASAADAAWPSRPIRVVVSYPAGGVSDVVARALGEKLAARLGQPVVVDNKAGAGGAIGLDLVAKAAPDGYTLGFSSISPLTLSPHLGKPLFDPQRDLVPVTSVMYSPVLLLGTARSTATDFKALVAQAKAQPGEVRWATAGLASLGHIMLEQIMCASQAKITHIPYKGGGQQLNDGLSAQFEVLSTNAGPAVLQHIKAGKFKALAVGAPQRLESLPGVPTLAELGYKSANMTSVFGIFAPAGTPAPVLQRLNAEINQVLTQPDMRAKLEATDNVATGGKAEDFARQIEAESQSNARIIQAAGIKLN</sequence>
</entry>
<entry dataset="Swiss-Prot" created="2009-04-14" modified="2022-08-03" version="80" xmlns="http://uniprot.org/uniprot">
    <accession>A9BNB8</accession>
    <name>PNP_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Polyribonucleotide nucleotidyltransferase</fullName>
            <ecNumber evidence="1">2.7.7.8</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="1">Polynucleotide phosphorylase</fullName>
            <shortName evidence="1">PNPase</shortName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="1" type="primary">pnp</name>
        <name type="ordered locus">Daci_5184</name>
    </gene>
    <organism>
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference key="1">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain>DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="1">Involved in mRNA degradation. Catalyzes the phosphorolysis of single-stranded polyribonucleotides processively in the 3'- to 5'-direction.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>phosphate + RNA(n+1) = a ribonucleoside 5'-diphosphate + RNA(n)</text>
            <dbReference type="Rhea" id="RHEA:22096"/>
            <dbReference type="Rhea" id="RHEA-COMP:14527"/>
            <dbReference type="Rhea" id="RHEA-COMP:17342"/>
            <dbReference type="ChEBI" id="CHEBI:43474"/>
            <dbReference type="ChEBI" id="CHEBI:57930"/>
            <dbReference type="ChEBI" id="CHEBI:140395"/>
            <dbReference type="EC" id="2.7.7.8"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </cofactor>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="1">Belongs to the polyribonucleotide nucleotidyltransferase family.</text>
    </comment>
    <dbReference type="EC" id="2.7.7.8" evidence="1"/>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX37813.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012206983.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A9BNB8"/>
    <dbReference type="SMR" id="A9BNB8"/>
    <dbReference type="STRING" id="398578.Daci_5184"/>
    <dbReference type="PRIDE" id="A9BNB8"/>
    <dbReference type="EnsemblBacteria" id="ABX37813">
        <property type="protein sequence ID" value="ABX37813"/>
        <property type="gene ID" value="Daci_5184"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_5184"/>
    <dbReference type="eggNOG" id="COG1185">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_004217_2_2_4"/>
    <dbReference type="OMA" id="LHILDVM"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000287">
        <property type="term" value="F:magnesium ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004654">
        <property type="term" value="F:polyribonucleotide nucleotidyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003723">
        <property type="term" value="F:RNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006402">
        <property type="term" value="P:mRNA catabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006396">
        <property type="term" value="P:RNA processing"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.50.140">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.1370.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.230.70">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01595">
        <property type="entry name" value="PNPase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001247">
        <property type="entry name" value="ExoRNase_PH_dom1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015847">
        <property type="entry name" value="ExoRNase_PH_dom2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036345">
        <property type="entry name" value="ExoRNase_PH_dom2_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004087">
        <property type="entry name" value="KH_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004088">
        <property type="entry name" value="KH_dom_type_1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036612">
        <property type="entry name" value="KH_dom_type_1_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012340">
        <property type="entry name" value="NA-bd_OB-fold"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012162">
        <property type="entry name" value="PNPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027408">
        <property type="entry name" value="PNPase/RNase_PH_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015848">
        <property type="entry name" value="PNPase_PH_RNA-bd_bac/org-type"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036456">
        <property type="entry name" value="PNPase_PH_RNA-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020568">
        <property type="entry name" value="Ribosomal_S5_D2-typ_fold"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR022967">
        <property type="entry name" value="S1_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003029">
        <property type="entry name" value="S1_domain"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11252">
        <property type="entry name" value="PTHR11252"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00013">
        <property type="entry name" value="KH_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03726">
        <property type="entry name" value="PNPase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01138">
        <property type="entry name" value="RNase_PH"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03725">
        <property type="entry name" value="RNase_PH_C"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00575">
        <property type="entry name" value="S1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF005499">
        <property type="entry name" value="PNPase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00322">
        <property type="entry name" value="KH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00316">
        <property type="entry name" value="S1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46915">
        <property type="entry name" value="SSF46915"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50249">
        <property type="entry name" value="SSF50249"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54211">
        <property type="entry name" value="SSF54211"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54791">
        <property type="entry name" value="SSF54791"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55666">
        <property type="entry name" value="SSF55666"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR03591">
        <property type="entry name" value="polynuc_phos"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50084">
        <property type="entry name" value="KH_TYPE_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50126">
        <property type="entry name" value="S1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword id="KW-0963">Cytoplasm</keyword>
    <keyword id="KW-0460">Magnesium</keyword>
    <keyword id="KW-0479">Metal-binding</keyword>
    <keyword id="KW-0548">Nucleotidyltransferase</keyword>
    <keyword id="KW-1185">Reference proteome</keyword>
    <keyword id="KW-0694">RNA-binding</keyword>
    <keyword id="KW-0808">Transferase</keyword>
    <feature type="chain" id="PRO_1000147914" description="Polyribonucleotide nucleotidyltransferase">
        <location>
            <begin position="1"/>
            <end position="753"/>
        </location>
    </feature>
    <feature type="domain" description="KH" evidence="1">
        <location>
            <begin position="555"/>
            <end position="614"/>
        </location>
    </feature>
    <feature type="domain" description="S1 motif" evidence="1">
        <location>
            <begin position="624"/>
            <end position="692"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="692"/>
            <end position="753"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="2">
        <location>
            <begin position="698"/>
            <end position="741"/>
        </location>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <position position="488"/>
        </location>
        <ligand>
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <position position="494"/>
        </location>
        <ligand>
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000255" key="1">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01595"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <sequence length="753" mass="82288" checksum="BF720B0B1E872316" modified="2008-01-15" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="59" xmlns="http://uniprot.org/uniprot">
    <accession>A9BNC1</accession>
    <name>A9BNC1_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">Type II secretion system protein H</fullName>
        </recommendedName>
        <alternativeName>
            <fullName evidence="10">General secretion pathway protein H</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="13" type="ordered locus">Daci_5187</name>
    </gene>
    <organism evidence="13 14">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="13 14" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="14">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="14" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="14">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="2">Cell inner membrane</location>
            <topology evidence="2">Single-pass membrane protein</topology>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Single-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX37816.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_5187"/>
    <dbReference type="PRIDE" id="A9BNC1"/>
    <dbReference type="EnsemblBacteria" id="ABX37816">
        <property type="protein sequence ID" value="ABX37816"/>
        <property type="gene ID" value="Daci_5187"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_5187"/>
    <dbReference type="eggNOG" id="COG4970">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_084761_1_0_4"/>
    <dbReference type="OMA" id="KRWDPRE"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015627">
        <property type="term" value="C:type II protein secretion system complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015628">
        <property type="term" value="P:protein secretion by the type II secretion system"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012902">
        <property type="entry name" value="N_methyl_site"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045584">
        <property type="entry name" value="Pilin-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR022346">
        <property type="entry name" value="T2SS_GspH"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12019">
        <property type="entry name" value="GspH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07963">
        <property type="entry name" value="N_methyl"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54523">
        <property type="entry name" value="SSF54523"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR02532">
        <property type="entry name" value="IV_pilin_GFxxxE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="6" id="KW-0997">Cell inner membrane</keyword>
    <keyword evidence="4" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="9 11" id="KW-0472">Membrane</keyword>
    <keyword evidence="5" id="KW-0488">Methylation</keyword>
    <keyword evidence="14" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="7 11" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="8 11" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="11">
        <location>
            <begin position="20"/>
            <end position="42"/>
        </location>
    </feature>
    <feature type="domain" description="GspH" evidence="12">
        <location>
            <begin position="51"/>
            <end position="174"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004167"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00004377"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00021549"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022481"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022519"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00030775"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="12">
        <source>
            <dbReference type="Pfam" id="PF12019"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="13">
        <source>
            <dbReference type="EMBL" id="ABX37816.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="14">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="187" mass="20079" checksum="C3D99016B4C2F8DF" modified="2008-01-15" version="1">MSSTWSQAHPGAKGFTAIELMVVVAILAVLTTLAAPSFHLIIERWRVRQTVEGLQSTLQYARSEAVRRGGGVFIQKLPQGTNGCTLAARHADWGCGWVVFVDRNGNKRWDPREELQRFDTPARTLVIRSRSAAIISVDRWGQMGGFTAMGFAVAPSSAGLVSAAAKGICVSSGGRIRVVGREGIPCA</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="89" xmlns="http://uniprot.org/uniprot">
    <accession>A9BNP1</accession>
    <name>A9BNP1_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="9">ABC transporter related</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="9" type="ordered locus">Daci_5307</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="9 10" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="10" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX37936.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012207105.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_5307"/>
    <dbReference type="PRIDE" id="A9BNP1"/>
    <dbReference type="EnsemblBacteria" id="ABX37936">
        <property type="protein sequence ID" value="ABX37936"/>
        <property type="gene ID" value="Daci_5307"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_5307"/>
    <dbReference type="eggNOG" id="COG3842">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_000604_1_1_4"/>
    <dbReference type="OMA" id="VYYKPKY"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043190">
        <property type="term" value="C:ATP-binding cassette (ABC) transporter complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0022857">
        <property type="term" value="F:transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.50.140">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003593">
        <property type="entry name" value="AAA+_ATPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003439">
        <property type="entry name" value="ABC_transporter-like_ATP-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017871">
        <property type="entry name" value="ABC_transporter-like_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008995">
        <property type="entry name" value="Mo/tungstate-bd_C_term_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012340">
        <property type="entry name" value="NA-bd_OB-fold"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013611">
        <property type="entry name" value="Transp-assoc_OB_typ2"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00005">
        <property type="entry name" value="ABC_tran"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08402">
        <property type="entry name" value="TOBE_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00382">
        <property type="entry name" value="AAA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50331">
        <property type="entry name" value="SSF50331"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00211">
        <property type="entry name" value="ABC_TRANSPORTER_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50893">
        <property type="entry name" value="ABC_TRANSPORTER_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4 7" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="2" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="6" id="KW-0472">Membrane</keyword>
    <keyword evidence="3 7" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="5" id="KW-1278">Translocase</keyword>
    <keyword evidence="1" id="KW-0813">Transport</keyword>
    <feature type="domain" description="ABC transporter" evidence="8">
        <location>
            <begin position="4"/>
            <end position="234"/>
        </location>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <begin position="36"/>
            <end position="43"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022448"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022967"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00434"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="PROSITE" id="PS50893"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="ABX37936.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="355" mass="38066" checksum="A1E41495D0ABE8AD" modified="2008-01-15" version="1">MSLIEMEGVAKSWGGTTALQALDLRIEPGSFCVLLGPSGCGKSTTLRIIAGLESATSGRVRIDGQDVTHLPPARRGIAMVFQNYALFPHLTVAQNIGFGLSVRKVPAAEARRRIDEAAALLGLDALLARRPGQLSGGQQQRVALGRALVARARVCLMDEPLSNLDAQLRQEMRTELRELQRRLGLTVVYVTHDQAEAMGMADQVVLLSQGRVEQCAAPQEIYSQPATTFAARFIGTPAMNIARLDGLHIAGSHASAAPAGLQQPGQARWLGVRPEDMRLSLHGDVGSGPVVAADIESLEYLGADLVLRCRVGSEQLMVRTAGSQLGGLQPGQLVGLRWAREATHFFDEKGRRCTA</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="89" xmlns="http://uniprot.org/uniprot">
    <accession>A9BNU7</accession>
    <name>A9BNU7_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="13">Cell divisionFtsK/SpoIIIE</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="13" type="ordered locus">Daci_5363</name>
    </gene>
    <organism evidence="13 14">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="13 14" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="14">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="14" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="14">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="8">Essential cell division protein that coordinates cell division and chromosome segregation. The N-terminus is involved in assembly of the cell-division machinery. The C-terminus functions as a DNA motor that moves dsDNA in an ATP-dependent manner towards the dif recombination site, which is located within the replication terminus region. Translocation stops specifically at Xer-dif sites, where FtsK interacts with the Xer recombinase, allowing activation of chromosome unlinking by recombination. FtsK orienting polar sequences (KOPS) guide the direction of DNA translocation. FtsK can remove proteins from DNA as it translocates, but translocation stops specifically at XerCD-dif site, thereby preventing removal of XerC and XerD from dif.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the FtsK/SpoIIIE/SftA family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX37992.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012207161.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_5363"/>
    <dbReference type="PRIDE" id="A9BNU7"/>
    <dbReference type="EnsemblBacteria" id="ABX37992">
        <property type="protein sequence ID" value="ABX37992"/>
        <property type="gene ID" value="Daci_5363"/>
    </dbReference>
    <dbReference type="GeneID" id="60689711"/>
    <dbReference type="KEGG" id="dac:Daci_5363"/>
    <dbReference type="eggNOG" id="COG1674">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_001981_9_7_4"/>
    <dbReference type="OMA" id="YKAEARD"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051301">
        <property type="term" value="P:cell division"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025199">
        <property type="entry name" value="FtsK_4TM"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041027">
        <property type="entry name" value="FtsK_alpha"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002543">
        <property type="entry name" value="FtsK_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018541">
        <property type="entry name" value="Ftsk_gamma"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036390">
        <property type="entry name" value="WH_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13491">
        <property type="entry name" value="FtsK_4TM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF17854">
        <property type="entry name" value="FtsK_alpha"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF09397">
        <property type="entry name" value="FtsK_gamma"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01580">
        <property type="entry name" value="FtsK_SpoIIIE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00843">
        <property type="entry name" value="Ftsk_gamma"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46785">
        <property type="entry name" value="SSF46785"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50901">
        <property type="entry name" value="FTSK"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="9" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="13" id="KW-0131">Cell cycle</keyword>
    <keyword evidence="13" id="KW-0132">Cell division</keyword>
    <keyword evidence="3" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="6" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="7 11" id="KW-0472">Membrane</keyword>
    <keyword evidence="9" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="14" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4 11" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="5 11" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="11">
        <location>
            <begin position="88"/>
            <end position="113"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="11">
        <location>
            <begin position="179"/>
            <end position="205"/>
        </location>
    </feature>
    <feature type="domain" description="FtsK" evidence="12">
        <location>
            <begin position="430"/>
            <end position="639"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="10">
        <location>
            <begin position="703"/>
            <end position="724"/>
        </location>
    </feature>
    <feature type="binding site" evidence="9">
        <location>
            <begin position="447"/>
            <end position="454"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00006474"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00024784"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00289"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="12">
        <source>
            <dbReference type="PROSITE" id="PS50901"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="13">
        <source>
            <dbReference type="EMBL" id="ABX37992.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="14">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="787" mass="86129" checksum="9AF5896856D39524" modified="2008-01-15" version="1"> </sequence>
</entry>
<entry dataset="Swiss-Prot" created="2009-04-14" modified="2022-08-03" version="84" xmlns="http://uniprot.org/uniprot">
    <accession>A9BP65</accession>
    <name>SYP_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Proline--tRNA ligase</fullName>
            <ecNumber evidence="1">6.1.1.15</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="1">Prolyl-tRNA synthetase</fullName>
            <shortName evidence="1">ProRS</shortName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="1" type="primary">proS</name>
        <name type="ordered locus">Daci_5481</name>
    </gene>
    <organism>
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference key="1">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain>DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="1">Catalyzes the attachment of proline to tRNA(Pro) in a two-step reaction: proline is first activated by ATP to form Pro-AMP and then transferred to the acceptor end of tRNA(Pro). As ProRS can inadvertently accommodate and process non-cognate amino acids such as alanine and cysteine, to avoid such errors it has two additional distinct editing activities against alanine. One activity is designated as 'pretransfer' editing and involves the tRNA(Pro)-independent hydrolysis of activated Ala-AMP. The other activity is designated 'posttransfer' editing and involves deacylation of mischarged Ala-tRNA(Pro). The misacylated Cys-tRNA(Pro) is not edited by ProRS.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>ATP + L-proline + tRNA(Pro) = AMP + diphosphate + L-prolyl-tRNA(Pro)</text>
            <dbReference type="Rhea" id="RHEA:14305"/>
            <dbReference type="Rhea" id="RHEA-COMP:9700"/>
            <dbReference type="Rhea" id="RHEA-COMP:9702"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:33019"/>
            <dbReference type="ChEBI" id="CHEBI:60039"/>
            <dbReference type="ChEBI" id="CHEBI:78442"/>
            <dbReference type="ChEBI" id="CHEBI:78532"/>
            <dbReference type="ChEBI" id="CHEBI:456215"/>
            <dbReference type="EC" id="6.1.1.15"/>
        </reaction>
    </comment>
    <comment type="subunit">
        <text evidence="1">Homodimer.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="domain">
        <text evidence="1">Consists of three domains: the N-terminal catalytic domain, the editing domain and the C-terminal anticodon-binding domain.</text>
    </comment>
    <comment type="similarity">
        <text evidence="1">Belongs to the class-II aminoacyl-tRNA synthetase family. ProS type 1 subfamily.</text>
    </comment>
    <dbReference type="EC" id="6.1.1.15" evidence="1"/>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX38110.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012207279.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A9BP65"/>
    <dbReference type="SMR" id="A9BP65"/>
    <dbReference type="STRING" id="398578.Daci_5481"/>
    <dbReference type="PRIDE" id="A9BP65"/>
    <dbReference type="EnsemblBacteria" id="ABX38110">
        <property type="protein sequence ID" value="ABX38110"/>
        <property type="gene ID" value="Daci_5481"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_5481"/>
    <dbReference type="eggNOG" id="COG0442">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_016739_0_0_4"/>
    <dbReference type="OMA" id="NCDYAAN"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0002161">
        <property type="term" value="F:aminoacyl-tRNA editing activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004827">
        <property type="term" value="F:proline-tRNA ligase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006433">
        <property type="term" value="P:prolyl-tRNA aminoacylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd00861">
        <property type="entry name" value="ProRS_anticodon_short"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="CDD" id="cd00779">
        <property type="entry name" value="ProRS_core_prok"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.930.10">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.800">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.960.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01569">
        <property type="entry name" value="Pro_tRNA_synth_type1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002314">
        <property type="entry name" value="aa-tRNA-synt_IIb"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006195">
        <property type="entry name" value="aa-tRNA-synth_II"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045864">
        <property type="entry name" value="aa-tRNA-synth_II/BPL/LPL"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004154">
        <property type="entry name" value="Anticodon-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036621">
        <property type="entry name" value="Anticodon-bd_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002316">
        <property type="entry name" value="Pro-tRNA-ligase_IIa"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004500">
        <property type="entry name" value="Pro-tRNA-synth_IIa_bac-type"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023717">
        <property type="entry name" value="Pro-tRNA-Synthase_IIa_type1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR044140">
        <property type="entry name" value="ProRS_anticodon_short"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR033730">
        <property type="entry name" value="ProRS_core_prok"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036754">
        <property type="entry name" value="YbaK/aa-tRNA-synt-asso_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007214">
        <property type="entry name" value="YbaK/aa-tRNA-synth-assoc-dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03129">
        <property type="entry name" value="HGTP_anticodon"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00587">
        <property type="entry name" value="tRNA-synt_2b"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04073">
        <property type="entry name" value="tRNA_edit"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF001535">
        <property type="entry name" value="ProRS_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR01046">
        <property type="entry name" value="TRNASYNTHPRO"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55681">
        <property type="entry name" value="SSF55681"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55826">
        <property type="entry name" value="SSF55826"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00409">
        <property type="entry name" value="proS_fam_II"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50862">
        <property type="entry name" value="AA_TRNA_LIGASE_II"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword id="KW-0030">Aminoacyl-tRNA synthetase</keyword>
    <keyword id="KW-0067">ATP-binding</keyword>
    <keyword id="KW-0963">Cytoplasm</keyword>
    <keyword id="KW-0436">Ligase</keyword>
    <keyword id="KW-0547">Nucleotide-binding</keyword>
    <keyword id="KW-0648">Protein biosynthesis</keyword>
    <keyword id="KW-1185">Reference proteome</keyword>
    <feature type="chain" id="PRO_1000199372" description="Proline--tRNA ligase">
        <location>
            <begin position="1"/>
            <end position="581"/>
        </location>
    </feature>
    <evidence type="ECO:0000255" key="1">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01569"/>
        </source>
    </evidence>
    <sequence length="581" mass="63948" checksum="87965788F414B313" modified="2008-01-15" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="72" xmlns="http://uniprot.org/uniprot">
    <accession>A9BPA7</accession>
    <name>A9BPA7_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="4">Recombination-associated protein RdgC</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="6" type="ordered locus">Daci_0024</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="7" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="1">May be involved in recombination.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="2">Cytoplasm</location>
            <location evidence="2">Nucleoid</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="3">Belongs to the RdgC family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX32671.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012201964.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_0024"/>
    <dbReference type="PRIDE" id="A9BPA7"/>
    <dbReference type="EnsemblBacteria" id="ABX32671">
        <property type="protein sequence ID" value="ABX32671"/>
        <property type="gene ID" value="Daci_0024"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_0024"/>
    <dbReference type="eggNOG" id="COG2974">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_052038_0_1_4"/>
    <dbReference type="OMA" id="RFDADFT"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009295">
        <property type="term" value="C:nucleoid"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004527">
        <property type="term" value="F:exonuclease activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006310">
        <property type="term" value="P:DNA recombination"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007476">
        <property type="entry name" value="RdgC"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR38103">
        <property type="entry name" value="PTHR38103"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04381">
        <property type="entry name" value="RdgC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="6" id="KW-0269">Exonuclease</keyword>
    <keyword evidence="6" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="6" id="KW-0540">Nuclease</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="5">
        <location>
            <begin position="298"/>
            <end position="351"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="5">
        <location>
            <begin position="301"/>
            <end position="322"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00003332"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00004453"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00008657"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022296"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="ABX32671.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="351" mass="37790" checksum="50CDD56619CAF129" modified="2008-01-15" version="1">MFKNMIVYRIAESWQGDLQQLEEALGKSPFAECGATQERSAGWVPPRGEPHGPLAESVANQWVMRFMTEAKMLPASVLNRRVNEKAAHIEATEGRKPGKKEKKELKDEAKLDLLPMAFTKQGAMWVWLDPQARTLVLDTGSQARADEVVSSLVEGLTGFALALVDTQTSAQAAMAHWLTTQESPAGFSIDRECELKAADESKAVVRYARHPLDIDEVRQHIEHGKLPTRLALTWDDRVSFVLTEGLQLRKIALLDAVMEGQSQDDGGFDADVAIATGELSKLIPDLIEALGGEGRTGLGQDLPASLQTPAAQTPTATQATPAAPRAAASGRGALTGPALAPVDTAPEEAPF</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="89" xmlns="http://uniprot.org/uniprot">
    <accession>A9BPD1</accession>
    <name>A9BPD1_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="1 4">Imidazolonepropionase</fullName>
            <ecNumber evidence="1 4">3.5.2.7</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="4">Imidazolone-5-propionate hydrolase</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="4" type="primary">hutI</name>
        <name evidence="6" type="ordered locus">Daci_0152</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="7" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="4">Catalyzes the hydrolytic cleavage of the carbon-nitrogen bond in imidazolone-5-propanoate to yield N-formimidoyl-L-glutamate. It is the third step in the universal histidine degradation pathway.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="4">
            <text>4-imidazolone-5-propanoate + H2O = N-formimidoyl-L-glutamate</text>
            <dbReference type="Rhea" id="RHEA:23660"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:58928"/>
            <dbReference type="ChEBI" id="CHEBI:77893"/>
            <dbReference type="EC" id="3.5.2.7"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="4">
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </cofactor>
        <cofactor evidence="4">
            <name>Fe(3+)</name>
            <dbReference type="ChEBI" id="CHEBI:29034"/>
        </cofactor>
        <text evidence="4">Binds 1 zinc or iron ion per subunit.</text>
    </comment>
    <comment type="pathway">
        <text evidence="4">Amino-acid degradation; L-histidine degradation into L-glutamate; N-formimidoyl-L-glutamate from L-histidine: step 3/3.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="4">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="4">Belongs to the metallo-dependent hydrolases superfamily. HutI family.</text>
    </comment>
    <dbReference type="EC" id="3.5.2.7" evidence="1 4"/>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX32798.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012202091.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_0152"/>
    <dbReference type="PRIDE" id="A9BPD1"/>
    <dbReference type="EnsemblBacteria" id="ABX32798">
        <property type="protein sequence ID" value="ABX32798"/>
        <property type="gene ID" value="Daci_0152"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_0152"/>
    <dbReference type="eggNOG" id="COG1228">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_041647_0_1_4"/>
    <dbReference type="OMA" id="CAPHARW"/>
    <dbReference type="UniPathway" id="UPA00379">
        <property type="reaction ID" value="UER00551"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0050480">
        <property type="term" value="F:imidazolonepropionase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005506">
        <property type="term" value="F:iron ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008270">
        <property type="term" value="F:zinc ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0019556">
        <property type="term" value="P:histidine catabolic process to glutamate and formamide"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniPathway"/>
    </dbReference>
    <dbReference type="GO" id="GO:0019557">
        <property type="term" value="P:histidine catabolic process to glutamate and formate"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniPathway"/>
    </dbReference>
    <dbReference type="CDD" id="cd01296">
        <property type="entry name" value="Imidazolone-5PH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.30.40.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00372">
        <property type="entry name" value="HutI"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006680">
        <property type="entry name" value="Amidohydro-rel"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005920">
        <property type="entry name" value="HutI"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011059">
        <property type="entry name" value="Metal-dep_hydrolase_composite"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR032466">
        <property type="entry name" value="Metal_Hydrolase"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR42752">
        <property type="entry name" value="PTHR42752"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01979">
        <property type="entry name" value="Amidohydro_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51338">
        <property type="entry name" value="SSF51338"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51556">
        <property type="entry name" value="SSF51556"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01224">
        <property type="entry name" value="hutI"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="2 4" id="KW-0369">Histidine metabolism</keyword>
    <keyword evidence="4 6" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="3 4" id="KW-0408">Iron</keyword>
    <keyword evidence="4" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4" id="KW-0862">Zinc</keyword>
    <feature type="domain" description="Amidohydro-rel" evidence="5">
        <location>
            <begin position="82"/>
            <end position="417"/>
        </location>
    </feature>
    <feature type="binding site" evidence="4">
        <location>
            <position position="90"/>
        </location>
    </feature>
    <feature type="binding site" evidence="4">
        <location>
            <position position="92"/>
        </location>
    </feature>
    <feature type="binding site" evidence="4">
        <location>
            <position position="99"/>
        </location>
        <ligand>
            <name>4-imidazolone-5-propanoate</name>
            <dbReference type="ChEBI" id="CHEBI:77893"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="4">
        <location>
            <position position="162"/>
        </location>
    </feature>
    <feature type="binding site" evidence="4">
        <location>
            <position position="195"/>
        </location>
        <ligand>
            <name>4-imidazolone-5-propanoate</name>
            <dbReference type="ChEBI" id="CHEBI:77893"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="4">
        <location>
            <position position="260"/>
        </location>
    </feature>
    <feature type="binding site" evidence="4">
        <location>
            <position position="263"/>
        </location>
        <ligand>
            <name>4-imidazolone-5-propanoate</name>
            <dbReference type="ChEBI" id="CHEBI:77893"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="4">
        <location>
            <position position="335"/>
        </location>
    </feature>
    <feature type="binding site" evidence="4">
        <location>
            <position position="337"/>
        </location>
        <ligand>
            <name>N-formimidoyl-L-glutamate</name>
            <dbReference type="ChEBI" id="CHEBI:58928"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="4">
        <location>
            <position position="339"/>
        </location>
        <ligand>
            <name>N-formimidoyl-L-glutamate</name>
            <dbReference type="ChEBI" id="CHEBI:58928"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="4">
        <location>
            <position position="340"/>
        </location>
        <ligand>
            <name>4-imidazolone-5-propanoate</name>
            <dbReference type="ChEBI" id="CHEBI:77893"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00012864"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022808"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023004"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00372"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="Pfam" id="PF01979"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="ABX32798.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="431" mass="45836" checksum="D4FC0CBC09A1D0CC" modified="2008-01-15" version="1">MTEPHAPASASACALAPSSSADGCWQNLRLAPDMFEAGQAVGDGEDACIVVQQGRVAWVGPQQALPPAYASLPRHDGQGMLATPGLVDCHTHLVYGGERANEFAMRLDGASYEEVARAGGGIVSSVRATREASEDELFAQALPRLQQLLDEGVCAIEIKSGYGLALEHERKQLRVARRLGQTLGVTVRTTFLGAHALPPEYAGRSQDYIDLVAGTMLPALAAEGLVDAVDVFCERIAFSLAETEQVFQAARRLGLPVKLHAEQLSNMEGAALAARYGALSCDHIEHLSESGITAMRGAGSVAVLLPGAYYTLHDTHMPPIAGLRAAGVPMAVSTDHNPGTSPCLSLLLMANMACTLFRLTVPEALAGITRHAARALGLQDEHGLIAAGRPAHFVLWPVRHVAELAYWFGSKPDCTIVRQGRIVRTRRQGSH</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="61" xmlns="http://uniprot.org/uniprot">
    <accession>A9BPH4</accession>
    <name>A9BPH4_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="4">3-alpha,7-alpha, 12-alpha-trihydroxy-5-beta-cholest-24-enoyl-CoAhydratase</fullName>
            <ecNumber evidence="4">4.2.1.107</ecNumber>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ordered locus">Daci_0195</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="5" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EC" id="4.2.1.107" evidence="4"/>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX32841.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_0195"/>
    <dbReference type="PRIDE" id="A9BPH4"/>
    <dbReference type="EnsemblBacteria" id="ABX32841">
        <property type="protein sequence ID" value="ABX32841"/>
        <property type="gene ID" value="Daci_0195"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_0195"/>
    <dbReference type="eggNOG" id="COG2030">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_040078_1_0_4"/>
    <dbReference type="OMA" id="IACSPFA"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0033989">
        <property type="term" value="F:3alpha,7alpha,12alpha-trihydroxy-5beta-cholest-24-enoyl-CoA hydratase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029069">
        <property type="entry name" value="HotDog_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR039569">
        <property type="entry name" value="MaoC-like_dehydrat_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002539">
        <property type="entry name" value="MaoC-like_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13452">
        <property type="entry name" value="MaoC_dehydrat_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01575">
        <property type="entry name" value="MaoC_dehydratas"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54637">
        <property type="entry name" value="SSF54637"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-0456">Lyase</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="MaoC_dehydrat_N" evidence="3">
        <location>
            <begin position="73"/>
            <end position="157"/>
        </location>
    </feature>
    <feature type="domain" description="MaoC-like" evidence="2">
        <location>
            <begin position="191"/>
            <end position="288"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="174"/>
            <end position="197"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF01575"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF13452"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="ABX32841.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="315" mass="34614" checksum="6A916A9AFDDDB3AD" modified="2008-01-15" version="1">MKAVGIAPAQSITEMTRSMTIRYDHLKQRPFEPVRQHYGERDTMLYALSLGLGSDPLCADALPFFYEGAPGGLRALPSQAVVLGYPGFWAREADTGIDWVKLLHGEQRMRLHRPLPASADVVGHNRITHLTDKGEGKGAIMVTERRLETAGGELLATVQQVSFLRGDGGYSLLDGGQPSDAPLAPLRPTPEDRAPDFTDTQAIRPEAALLYRLMGDYNPLHADPAVARKAGFERPILHGLASYGLVAHAVLRQCGDRNPARLKALDVRFTAPVYPGETLVTEIWRTPDQPCQLQLRARVLERDKVVLSHGYAELA</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="63" xmlns="http://uniprot.org/uniprot">
    <accession>A9BPJ9</accession>
    <name>A9BPJ9_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Urea ABC transporter, urea binding protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Daci_0220</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="2" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX32866.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012202159.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_0220"/>
    <dbReference type="PRIDE" id="A9BPJ9"/>
    <dbReference type="EnsemblBacteria" id="ABX32866">
        <property type="protein sequence ID" value="ABX32866"/>
        <property type="gene ID" value="Daci_0220"/>
    </dbReference>
    <dbReference type="GeneID" id="60690624"/>
    <dbReference type="KEGG" id="dac:Daci_0220"/>
    <dbReference type="eggNOG" id="COG0683">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_027128_1_1_4"/>
    <dbReference type="OMA" id="LWSKTRI"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="CDD" id="cd06355">
        <property type="entry name" value="PBP1_FmdD-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017777">
        <property type="entry name" value="ABC_urea-bd_UrtA"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR028082">
        <property type="entry name" value="Peripla_BP_I"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006311">
        <property type="entry name" value="TAT_signal"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53822">
        <property type="entry name" value="SSF53822"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR03407">
        <property type="entry name" value="urea_ABC_UrtA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51318">
        <property type="entry name" value="TAT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ABX32866.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="421" mass="45831" checksum="FF772FE1AD092122" modified="2008-01-15" version="1">MSHPSDPRTPGSPGTEMGRRRVLQALGAASVAGLPAWSFAQPTAQVNTTKLAVTDTEVVVGQLHSATGTMAISETGSIQAEQLAIDQINAMGGILGRKIRVIKEDGASDWPTFAEKSKKLLINDRCAAVFGCWTSASRKAVLPVFEKENGLLYYPTFYEGLEQSKNVIYTGQEATQQILYSLDWAKAEKKAKTFFLIGSDYIWPRTSMKIARKHIENFQKGKVVGEEYYPLGSTNFGSLVNKIKLQKPDCIFVAVVGGSNVAFYKALKAAGITGDKQLLVTLSVTEDEMTGVGGENFTGFYSSMKYFQTLDNENNKKFVAAFKAKYGPNAVIGDVTQAGYLGPWLWKAAVEKAKSFDVDKVVAASPGLELKTAPEGYVKVDANHHLWSKSRIAVGQPDGTFKVVSESPELIKPDPFPKGYQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="64" xmlns="http://uniprot.org/uniprot">
    <accession>A9BPR1</accession>
    <name>A9BPR1_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Putative transmembrane protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_0384</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX33030.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012202323.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_0384"/>
    <dbReference type="PRIDE" id="A9BPR1"/>
    <dbReference type="EnsemblBacteria" id="ABX33030">
        <property type="protein sequence ID" value="ABX33030"/>
        <property type="gene ID" value="Daci_0384"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_0384"/>
    <dbReference type="eggNOG" id="COG2945">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_086287_1_0_4"/>
    <dbReference type="OMA" id="MDWARPQ"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.1820">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029058">
        <property type="entry name" value="AB_hydrolase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR022742">
        <property type="entry name" value="Hydrolase_4"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12146">
        <property type="entry name" value="Hydrolase_4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53474">
        <property type="entry name" value="SSF53474"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0812">Transmembrane</keyword>
    <feature type="domain" description="Hydrolase_4" evidence="1">
        <location>
            <begin position="44"/>
            <end position="139"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF12146"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX33030.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="211" mass="22097" checksum="994C05A26C59D3F6" modified="2008-01-15" version="1">MNAQTERLTLTGLAGAVEALRDAPAADAPPRGVAIIAHPHPLFGGTMDNKVVQTLARAFVQCGYTAVRFNFRGVGASAGEHDAGVGEAQDMLSVVRQVAPEGPIALAGFSFGAFVTSHVLAGLWNEGRVEKAVLVGTAASRFTVAPVPPEAHDRTLVVHGEADDTVPLSAVMDWARPQILPVTVVPGGGHFFHGQLPLLKSLVVRHLRSLP</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="42" xmlns="http://uniprot.org/uniprot">
    <accession>A9BPT3</accession>
    <name>A9BPT3_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Daci_0406</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="2" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX33052.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_0406"/>
    <dbReference type="PRIDE" id="A9BPT3"/>
    <dbReference type="EnsemblBacteria" id="ABX33052">
        <property type="protein sequence ID" value="ABX33052"/>
        <property type="gene ID" value="Daci_0406"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_0406"/>
    <dbReference type="eggNOG" id="ENOG50335NT">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_080357_1_0_4"/>
    <dbReference type="OMA" id="ACSPRYD"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ABX33052.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="205" mass="21926" checksum="848686105E6EE5C4" modified="2008-01-15" version="1">MTLMESFSKAKGRALALRLGAALLVLAPLAACSPRLDWRQVAVEGTPLRVLLPCDPQSATRPVELGQGMGTVQMSMMGCDADASTYAVSHFLVSEPSRAAEMLSYWQAAVLGQMNPGAPGQAPAGAKQLRSKEDGPFLPAGALNLPQSLRTTFEGVGPQGWKLTAHGVWFARMEPAGARLYHAVIYSDKPRTDEANNFFASLQLQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="88" xmlns="http://uniprot.org/uniprot">
    <accession>A9BPT6</accession>
    <name>A9BPT6_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="6 13">Phosphoenolpyruvate-protein phosphotransferase</fullName>
            <ecNumber evidence="5 13">2.7.3.9</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="12 13">Phosphotransferase system, enzyme I</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="20" type="ordered locus">Daci_0409</name>
    </gene>
    <organism evidence="20 21">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="20 21" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="21">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="21" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="21">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="13">General (non sugar-specific) component of the phosphoenolpyruvate-dependent sugar phosphotransferase system (sugar PTS). This major carbohydrate active-transport system catalyzes the phosphorylation of incoming sugar substrates concomitantly with their translocation across the cell membrane. Enzyme I transfers the phosphoryl group from phosphoenolpyruvate (PEP) to the phosphoryl carrier protein (HPr).</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1 13">
            <text>L-histidyl-[protein] + phosphoenolpyruvate = N(pros)-phospho-L-histidyl-[protein] + pyruvate</text>
            <dbReference type="Rhea" id="RHEA:23880"/>
            <dbReference type="Rhea" id="RHEA-COMP:9745"/>
            <dbReference type="Rhea" id="RHEA-COMP:9746"/>
            <dbReference type="ChEBI" id="CHEBI:15361"/>
            <dbReference type="ChEBI" id="CHEBI:29979"/>
            <dbReference type="ChEBI" id="CHEBI:58702"/>
            <dbReference type="ChEBI" id="CHEBI:64837"/>
            <dbReference type="EC" id="2.7.3.9"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="2 13 16">
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </cofactor>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="3 13">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="4 13">Belongs to the PEP-utilizing enzyme family.</text>
    </comment>
    <dbReference type="EC" id="2.7.3.9" evidence="5 13"/>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX33055.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012202347.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_0409"/>
    <dbReference type="PRIDE" id="A9BPT6"/>
    <dbReference type="EnsemblBacteria" id="ABX33055">
        <property type="protein sequence ID" value="ABX33055"/>
        <property type="gene ID" value="Daci_0409"/>
    </dbReference>
    <dbReference type="GeneID" id="60690816"/>
    <dbReference type="KEGG" id="dac:Daci_0409"/>
    <dbReference type="eggNOG" id="COG1080">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_007308_7_0_4"/>
    <dbReference type="OMA" id="CNAEWAL"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016301">
        <property type="term" value="F:kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008965">
        <property type="term" value="F:phosphoenolpyruvate-protein phosphotransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009401">
        <property type="term" value="P:phosphoenolpyruvate-dependent sugar phosphotransferase system"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016310">
        <property type="term" value="P:phosphorylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.274.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.20.20.60">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008279">
        <property type="entry name" value="PEP-util_enz_mobile_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018274">
        <property type="entry name" value="PEP_util_AS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000121">
        <property type="entry name" value="PEP_util_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023151">
        <property type="entry name" value="PEP_util_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036637">
        <property type="entry name" value="Phosphohistidine_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR024692">
        <property type="entry name" value="PTS_EI"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006318">
        <property type="entry name" value="PTS_EI-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008731">
        <property type="entry name" value="PTS_EIN"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036618">
        <property type="entry name" value="PtsI_HPr-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015813">
        <property type="entry name" value="Pyrv/PenolPyrv_Kinase-like_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR040442">
        <property type="entry name" value="Pyrv_Kinase-like_dom_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF05524">
        <property type="entry name" value="PEP-utilisers_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00391">
        <property type="entry name" value="PEP-utilizers"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02896">
        <property type="entry name" value="PEP-utilizers_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF000732">
        <property type="entry name" value="PTS_enzyme_I"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47831">
        <property type="entry name" value="SSF47831"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51621">
        <property type="entry name" value="SSF51621"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52009">
        <property type="entry name" value="SSF52009"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01417">
        <property type="entry name" value="PTS_I_fam"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00742">
        <property type="entry name" value="PEP_ENZYMES_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00370">
        <property type="entry name" value="PEP_ENZYMES_PHOS_SITE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="8 13" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="13" id="KW-0418">Kinase</keyword>
    <keyword evidence="13 16" id="KW-0460">Magnesium</keyword>
    <keyword evidence="11 13 16" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="10 13" id="KW-0598">Phosphotransferase system</keyword>
    <keyword evidence="20" id="KW-0670">Pyruvate</keyword>
    <keyword evidence="21" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="9 13" id="KW-0762">Sugar transport</keyword>
    <keyword evidence="13 20" id="KW-0808">Transferase</keyword>
    <keyword evidence="7 13" id="KW-0813">Transport</keyword>
    <feature type="domain" description="PEP-utilisers_N" evidence="19">
        <location>
            <begin position="6"/>
            <end position="129"/>
        </location>
    </feature>
    <feature type="domain" description="PEP-utilizers" evidence="17">
        <location>
            <begin position="182"/>
            <end position="251"/>
        </location>
    </feature>
    <feature type="domain" description="PEP-utilizers_C" evidence="18">
        <location>
            <begin position="278"/>
            <end position="567"/>
        </location>
    </feature>
    <feature type="region of interest" description="PEP binding" evidence="15">
        <location>
            <begin position="481"/>
            <end position="482"/>
        </location>
    </feature>
    <feature type="active site" description="Tele-phosphohistidine intermediate" evidence="14">
        <location>
            <position position="215"/>
        </location>
    </feature>
    <feature type="active site" description="Proton donor" evidence="14">
        <location>
            <position position="529"/>
        </location>
    </feature>
    <feature type="binding site" evidence="15">
        <location>
            <position position="322"/>
        </location>
        <ligand>
            <name>phosphoenolpyruvate</name>
            <dbReference type="ChEBI" id="CHEBI:58702"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="15">
        <location>
            <position position="359"/>
        </location>
        <ligand>
            <name>phosphoenolpyruvate</name>
            <dbReference type="ChEBI" id="CHEBI:58702"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="16">
        <location>
            <position position="458"/>
        </location>
        <ligand>
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="16">
        <location>
            <position position="482"/>
        </location>
        <ligand>
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="15">
        <location>
            <position position="492"/>
        </location>
        <ligand>
            <name>phosphoenolpyruvate</name>
            <dbReference type="ChEBI" id="CHEBI:58702"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00000683"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00001946"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00004496"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00007837"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00012232"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00016544"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022448"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00022490"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00022597"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00022683"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="12">
        <source>
            <dbReference type="ARBA" id="ARBA00033235"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="13">
        <source>
            <dbReference type="PIRNR" id="PIRNR000732"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="14">
        <source>
            <dbReference type="PIRSR" id="PIRSR000732-1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="15">
        <source>
            <dbReference type="PIRSR" id="PIRSR000732-2"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="16">
        <source>
            <dbReference type="PIRSR" id="PIRSR000732-3"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="17">
        <source>
            <dbReference type="Pfam" id="PF00391"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="18">
        <source>
            <dbReference type="Pfam" id="PF02896"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="19">
        <source>
            <dbReference type="Pfam" id="PF05524"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="20">
        <source>
            <dbReference type="EMBL" id="ABX33055.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="21">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="591" mass="64850" checksum="DE288F0322695EC3" modified="2008-01-15" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="73" xmlns="http://uniprot.org/uniprot">
    <accession>A9BQ44</accession>
    <name>A9BQ44_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Short-chain dehydrogenase/reductase SDR</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Daci_0613</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="2" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX33259.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012202545.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_0613"/>
    <dbReference type="PRIDE" id="A9BQ44"/>
    <dbReference type="EnsemblBacteria" id="ABX33259">
        <property type="protein sequence ID" value="ABX33259"/>
        <property type="gene ID" value="Daci_0613"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_0613"/>
    <dbReference type="eggNOG" id="COG1028">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_010194_1_0_4"/>
    <dbReference type="OMA" id="GMTYTPM"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036291">
        <property type="entry name" value="NAD(P)-bd_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002347">
        <property type="entry name" value="SDR_fam"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00081">
        <property type="entry name" value="GDHRDH"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00080">
        <property type="entry name" value="SDRFAMILY"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51735">
        <property type="entry name" value="SSF51735"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ABX33259.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="253" mass="26275" checksum="12E3B24CCA0381E3" modified="2008-01-15" version="1">MSTPDPFSLAGKRILVTGASSGIGRQIAISCAEQGAELVITGRNPDRLASTYEALRGDGHQSIVADLSNAADLDSLVTAAGVLHGVVHAAGISKLVPFRMVNETHLDEIFASNTFAPILLTKGLLAKKRISPQGSIVFVTSVASHIGPMASAAYAASKAALLGAVRTLGQEVAKQGIRANCIAPGYVRTPLLDGLSQGGANMGSLLELAPLGLGEPEDVAYAAVFYLSDASRWLTRNYFIVDGGLTIPMDIYA</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="57" xmlns="http://uniprot.org/uniprot">
    <accession>A9BQU3</accession>
    <name>A9BQU3_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ordered locus">Daci_0252</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="5" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Periplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the UPF0065 (bug) family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX32898.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012202191.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_0252"/>
    <dbReference type="PRIDE" id="A9BQU3"/>
    <dbReference type="EnsemblBacteria" id="ABX32898">
        <property type="protein sequence ID" value="ABX32898"/>
        <property type="gene ID" value="Daci_0252"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_0252"/>
    <dbReference type="eggNOG" id="COG3181">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_045683_0_2_4"/>
    <dbReference type="OMA" id="MLAYSPH"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0042597">
        <property type="term" value="C:periplasmic space"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.190.150">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005064">
        <property type="entry name" value="BUG"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR042100">
        <property type="entry name" value="Bug_dom1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006311">
        <property type="entry name" value="TAT_signal"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR42928">
        <property type="entry name" value="PTHR42928"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03401">
        <property type="entry name" value="TctC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF017082">
        <property type="entry name" value="YflP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51318">
        <property type="entry name" value="TAT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="3">
        <location>
            <begin position="1"/>
            <end position="26"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5002732426" evidence="3">
        <location>
            <begin position="27"/>
            <end position="325"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004418"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00006987"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="ABX32898.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="325" mass="34326" checksum="F3DD159BD8BA1B66" modified="2008-01-15" version="1">MTLSRKQFLRAAGATALVASGAGALAQSNWPTRPLRLVVPYPPGGSSDIIARAIGPLLSAELKQPVVIENKPGANGNLGADMVAKAQPDGHTLMLCDLGALAISPSLYTKLSFDLSRDLRGTAMLAYSPHLLVVHPSVPANNLQELVALSKKEDLSFAVTATGSAPHLAGVELARATGARWEYVPYKGGVQSIQDTVAGQTQVLMNGMLATYPHVQSGKLKLLGLSKGTRMPLAANVPTIAEQGVPGFETGTWQGVVVPAKTPEAVVQRLHEALITAIRSPEVRARLTGQGAEVVTMNPAETARFLTTERQRWQKVVQTAGLKLD</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="44" xmlns="http://uniprot.org/uniprot">
    <accession>A9BR09</accession>
    <name>A9BR09_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_0318</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX32964.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_0318"/>
    <dbReference type="PRIDE" id="A9BR09"/>
    <dbReference type="EnsemblBacteria" id="ABX32964">
        <property type="protein sequence ID" value="ABX32964"/>
        <property type="gene ID" value="Daci_0318"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_0318"/>
    <dbReference type="eggNOG" id="COG3774">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_071032_0_0_4"/>
    <dbReference type="OMA" id="YLVAHHG"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016757">
        <property type="term" value="F:glycosyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008441">
        <property type="entry name" value="AfumC-like_glycosyl_Trfase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029044">
        <property type="entry name" value="Nucleotide-diphossugar_trans"/>
    </dbReference>
    <dbReference type="Pfam" id="PF05704">
        <property type="entry name" value="Caps_synth"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53448">
        <property type="entry name" value="SSF53448"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0808">Transferase</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX32964.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="314" mass="35257" checksum="873A6420EF525005" modified="2008-01-15" version="1">MKKIPAVLFRLLHRWAAPSKIGADYTMPAPLQLPPSPPAADGLAAEIPKTIWTYWNQSGLDPFVQQCVDSWRRQCPDHQVIVVTPENLGQYVACGDLPAAFAELHPTKQSDWLRLYLVAHHGGYWFDATTLLTAPLDWMSASPGAGAAELAGFYLEGFTRDRRYPVIESWSFCAPAGSRFVSEWQKEFHQALIVDGPEAYLQRLQSRHDAAEVLQGIPDPNYLLIHVTAQQVMRRLPDARLTLFKAEDTAFFYHSALRWKWYLLYPQLCLAKAPQVAAPIVKLRGGERRHFTDMLALHGGAAPGSIWSRALSAR</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2021-06-02" version="44" xmlns="http://uniprot.org/uniprot">
    <accession>A9BRA7</accession>
    <name>A9BRA7_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_0519</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX33165.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012202451.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_0519"/>
    <dbReference type="EnsemblBacteria" id="ABX33165">
        <property type="protein sequence ID" value="ABX33165"/>
        <property type="gene ID" value="Daci_0519"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_0519"/>
    <dbReference type="eggNOG" id="COG3399">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_120951_0_0_4"/>
    <dbReference type="OMA" id="CHVLAIV"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007418">
        <property type="entry name" value="DUF474"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF015875">
        <property type="entry name" value="UCP015875"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="6"/>
            <end position="30"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="51"/>
            <end position="71"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="91"/>
            <end position="113"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="125"/>
            <end position="148"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX33165.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="150" mass="16232" checksum="3AAA827DBAC9BEE5" modified="2008-01-15" version="1">MSYGLLLTLHLLAAIAFAGTVFFEVVLLAGARRHLPAAVARATEQALGDRAVAVMPWVLVVLYGAGLGLAWQHRAALAAAFAAPLASSFGLLLALKIVLALSVFGHFLAAMWWRRRGVPGGRRSHRLHLSVFCHVLAIVLLAKAMFYLHW</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="45" xmlns="http://uniprot.org/uniprot">
    <accession>A9BRI8</accession>
    <name>A9BRI8_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Daci_0703</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="2" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX33349.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_0703"/>
    <dbReference type="PRIDE" id="A9BRI8"/>
    <dbReference type="EnsemblBacteria" id="ABX33349">
        <property type="protein sequence ID" value="ABX33349"/>
        <property type="gene ID" value="Daci_0703"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_0703"/>
    <dbReference type="eggNOG" id="ENOG5032BYX">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_064907_0_0_4"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR021815">
        <property type="entry name" value="DUF3396"/>
    </dbReference>
    <dbReference type="Pfam" id="PF11876">
        <property type="entry name" value="DUF3396"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ABX33349.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="364" mass="40900" checksum="CD01CC2285AEB8F5" modified="2008-01-15" version="1">MDMAKDFNKPLSTRELQKATVATMDILKALVLKNQFGRICARAGWTIEMVFHDGDSLAVRERAWKVIDLFIEVVGSEKLAIWWGLAPVAMASEKGRERMEKHKPSTLNNPKGFAMMFDLASGKPKPPDDWVENAQDFRLCCRVENDEGIWYRERYRTPGRGPAMSFIRMAFPAWWILDQPPEHNVGRLTTQMVELMQPYWAIAGWGVIPAVEERNIGPDGKGQQILYPYLQRFPGLNALGSLALMSHDFNNAMYSINWLSFVSDVLLEKLGGREAVRKQVEGSQYLSAGDVGNCLGIRAGDFPGLGDMDQGLTLPAFGEAARLLKPLRARSRLNNFIGPPPSGSNDEHAWQLACDAYMSRFDLF</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="70" xmlns="http://uniprot.org/uniprot">
    <accession>A9BRM5</accession>
    <name>A9BRM5_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="7">Methyl-accepting chemotaxis sensory transducer</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ordered locus">Daci_0740</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="8" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the methyl-accepting chemotaxis (MCP) protein family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX33386.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012202672.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_0740"/>
    <dbReference type="PRIDE" id="A9BRM5"/>
    <dbReference type="EnsemblBacteria" id="ABX33386">
        <property type="protein sequence ID" value="ABX33386"/>
        <property type="gene ID" value="Daci_0740"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_0740"/>
    <dbReference type="eggNOG" id="COG0840">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_000445_107_16_4"/>
    <dbReference type="OMA" id="HANELGT"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004888">
        <property type="term" value="F:transmembrane signaling receptor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006935">
        <property type="term" value="P:chemotaxis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0007165">
        <property type="term" value="P:signal transduction"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004090">
        <property type="entry name" value="Chemotax_Me-accpt_rcpt"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003660">
        <property type="entry name" value="HAMP_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR024478">
        <property type="entry name" value="HlyB_4HB_MCP"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004089">
        <property type="entry name" value="MCPsignal_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12729">
        <property type="entry name" value="4HB_MCP_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00015">
        <property type="entry name" value="MCPsignal"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00260">
        <property type="entry name" value="CHEMTRNSDUCR"/>
    </dbReference>
    <dbReference type="SMART" id="SM00304">
        <property type="entry name" value="HAMP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00283">
        <property type="entry name" value="MA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50111">
        <property type="entry name" value="CHEMOTAXIS_TRANSDUC_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50885">
        <property type="entry name" value="HAMP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-0472">Membrane</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0807">Transducer</keyword>
    <keyword evidence="4" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="4" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="4">
        <location>
            <begin position="189"/>
            <end position="212"/>
        </location>
    </feature>
    <feature type="domain" description="HAMP" evidence="6">
        <location>
            <begin position="214"/>
            <end position="266"/>
        </location>
    </feature>
    <feature type="domain" description="Methyl-accepting transducer" evidence="5">
        <location>
            <begin position="271"/>
            <end position="500"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="3">
        <location>
            <begin position="516"/>
            <end position="565"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="3">
        <location>
            <begin position="527"/>
            <end position="542"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00029447"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00284"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="PROSITE" id="PS50111"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="PROSITE" id="PS50885"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="ABX33386.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="565" mass="59900" checksum="02BBEB7561E78B13" modified="2008-01-15" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="67" xmlns="http://uniprot.org/uniprot">
    <accession>A9BRN8</accession>
    <name>A9BRN8_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="6">Thiamine pyrophosphate protein central region</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ordered locus">Daci_0959</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="7" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1 2">Belongs to the TPP enzyme family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX33605.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012202891.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_0959"/>
    <dbReference type="PRIDE" id="A9BRN8"/>
    <dbReference type="EnsemblBacteria" id="ABX33605">
        <property type="protein sequence ID" value="ABX33605"/>
        <property type="gene ID" value="Daci_0959"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_0959"/>
    <dbReference type="eggNOG" id="COG0028">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_013748_3_1_4"/>
    <dbReference type="OMA" id="GKGAFPW"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003824">
        <property type="term" value="F:catalytic activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000287">
        <property type="term" value="F:magnesium ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030976">
        <property type="term" value="F:thiamine pyrophosphate binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0044281">
        <property type="term" value="P:small molecule metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029035">
        <property type="entry name" value="DHS-like_NAD/FAD-binding_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029061">
        <property type="entry name" value="THDP-binding"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012000">
        <property type="entry name" value="Thiamin_PyroP_enz_cen_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012001">
        <property type="entry name" value="Thiamin_PyroP_enz_TPP-bd_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045229">
        <property type="entry name" value="TPP_enz"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011766">
        <property type="entry name" value="TPP_enzyme-bd_C"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR18968">
        <property type="entry name" value="PTHR18968"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02775">
        <property type="entry name" value="TPP_enzyme_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00205">
        <property type="entry name" value="TPP_enzyme_M"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02776">
        <property type="entry name" value="TPP_enzyme_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52467">
        <property type="entry name" value="SSF52467"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52518">
        <property type="entry name" value="SSF52518"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0786">Thiamine pyrophosphate</keyword>
    <feature type="domain" description="TPP_enzyme_N" evidence="5">
        <location>
            <begin position="9"/>
            <end position="178"/>
        </location>
    </feature>
    <feature type="domain" description="TPP_enzyme_M" evidence="3">
        <location>
            <begin position="199"/>
            <end position="326"/>
        </location>
    </feature>
    <feature type="domain" description="TPP_enzyme_C" evidence="4">
        <location>
            <begin position="389"/>
            <end position="535"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00007812"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="RuleBase" id="RU362132"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF00205"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="Pfam" id="PF02775"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="Pfam" id="PF02776"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="ABX33605.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="568" mass="59893" checksum="9C7BF1351D5D8EFD" modified="2008-01-15" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="67" xmlns="http://uniprot.org/uniprot">
    <accession>A9BRY8</accession>
    <name>A9BRY8_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="7 12">Anthranilate synthase component 1</fullName>
            <ecNumber evidence="6 12">4.1.3.27</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="12" type="primary">trpE</name>
        <name evidence="15" type="ordered locus">Daci_0752</name>
    </gene>
    <organism evidence="15 16">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="15 16" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="16">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="16" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="16">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="12">Part of a heterotetrameric complex that catalyzes the two-step biosynthesis of anthranilate, an intermediate in the biosynthesis of L-tryptophan. In the first step, the glutamine-binding beta subunit (TrpG) of anthranilate synthase (AS) provides the glutamine amidotransferase activity which generates ammonia as a substrate that, along with chorismate, is used in the second step, catalyzed by the large alpha subunit of AS (TrpE) to produce anthranilate. In the absence of TrpG, TrpE can synthesize anthranilate directly from chorismate and high concentrations of ammonia.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1 12">
            <text>chorismate + L-glutamine = anthranilate + H(+) + L-glutamate + pyruvate</text>
            <dbReference type="Rhea" id="RHEA:21732"/>
            <dbReference type="ChEBI" id="CHEBI:15361"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:16567"/>
            <dbReference type="ChEBI" id="CHEBI:29748"/>
            <dbReference type="ChEBI" id="CHEBI:29985"/>
            <dbReference type="ChEBI" id="CHEBI:58359"/>
            <dbReference type="EC" id="4.1.3.27"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="2 12">
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </cofactor>
    </comment>
    <comment type="pathway">
        <text evidence="3 12">Amino-acid biosynthesis; L-tryptophan biosynthesis; L-tryptophan from chorismate: step 1/5.</text>
    </comment>
    <comment type="subunit">
        <text evidence="5 12">Heterotetramer consisting of two non-identical subunits: a beta subunit (TrpG) and a large alpha subunit (TrpE).</text>
    </comment>
    <comment type="similarity">
        <text evidence="4 12">Belongs to the anthranilate synthase component I family.</text>
    </comment>
    <dbReference type="EC" id="4.1.3.27" evidence="6 12"/>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX33398.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012202684.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_0752"/>
    <dbReference type="PRIDE" id="A9BRY8"/>
    <dbReference type="EnsemblBacteria" id="ABX33398">
        <property type="protein sequence ID" value="ABX33398"/>
        <property type="gene ID" value="Daci_0752"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_0752"/>
    <dbReference type="eggNOG" id="COG0147">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_006493_9_3_4"/>
    <dbReference type="OMA" id="GCVGYLD"/>
    <dbReference type="UniPathway" id="UPA00035">
        <property type="reaction ID" value="UER00040"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004049">
        <property type="term" value="F:anthranilate synthase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000162">
        <property type="term" value="P:tryptophan biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniPathway"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.60.120.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005801">
        <property type="entry name" value="ADC_synthase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019999">
        <property type="entry name" value="Anth_synth_I-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006805">
        <property type="entry name" value="Anth_synth_I_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005256">
        <property type="entry name" value="Anth_synth_I_PabB"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015890">
        <property type="entry name" value="Chorismate_C"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11236">
        <property type="entry name" value="PTHR11236"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04715">
        <property type="entry name" value="Anth_synt_I_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00425">
        <property type="entry name" value="Chorismate_bind"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00095">
        <property type="entry name" value="ANTSNTHASEI"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56322">
        <property type="entry name" value="SSF56322"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00564">
        <property type="entry name" value="trpE_most"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="8 12" id="KW-0028">Amino-acid biosynthesis</keyword>
    <keyword evidence="10 12" id="KW-0057">Aromatic amino acid biosynthesis</keyword>
    <keyword evidence="11 12 15" id="KW-0456">Lyase</keyword>
    <keyword evidence="12" id="KW-0460">Magnesium</keyword>
    <keyword evidence="12" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="16" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="9 12" id="KW-0822">Tryptophan biosynthesis</keyword>
    <feature type="domain" description="Anth_synt_I_N" evidence="14">
        <location>
            <begin position="27"/>
            <end position="177"/>
        </location>
    </feature>
    <feature type="domain" description="Chorismate_bind" evidence="13">
        <location>
            <begin position="226"/>
            <end position="483"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00000329"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00001946"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00004873"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00009562"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00011575"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00012266"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00020653"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00022605"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00022822"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00023141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="ARBA" id="ARBA00023239"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="12">
        <source>
            <dbReference type="RuleBase" id="RU364045"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="13">
        <source>
            <dbReference type="Pfam" id="PF00425"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="14">
        <source>
            <dbReference type="Pfam" id="PF04715"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="15">
        <source>
            <dbReference type="EMBL" id="ABX33398.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="16">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="499" mass="54739" checksum="9F298066C10B1359" modified="2008-01-15" version="1">MITELEFKSLAAQGYNRIPLMVEAFADLETPLSLYLKLAHAGGDGKHSFLLESVVGGERFGRYSFIGLPARTLLRASGFGDAACTEVVTDGQVVETAKGNPLDFIAAYQKRFKVALRPGLPRFCGGLAGYFGYDAVRYIEKKLEDSCPPDTLNCPDILLLQCEEVAVIDNLSGKLYLIVYANPGESEAYTRAKKRLRQLKDLLRYSVSAPQIKAGESHPAQRSFAKEDYLAAVEKAKELIAAGDFMQVQVGQRIHKRFTASPLSLYRALRSLNPSPYMYYYHLGDFHVVGASPEILVRQENTDEGQKVTIRPLAGTRPRGATPEADKATEKELVADPKERAEHVMLIDLARNDIGRIAKTGSVKVTEAFAVERYSHVMHIVSNVEGILREGMDNMDVFKATFPAGTLTGAPKVHAMEVIDQLEPTKRGIYGGACGYLSFAGDMDLAIAIRTGVIKDGTLYVQAAAGVVADSVPEMEWKETEHKARALMRAAELVEEGLE</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="95" xmlns="http://uniprot.org/uniprot">
    <accession>A9BS83</accession>
    <name>A9BS83_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">Histidine kinase</fullName>
            <ecNumber evidence="2">2.7.13.3</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="7" type="ordered locus">Daci_0847</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="8" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>ATP + protein L-histidine = ADP + protein N-phospho-L-histidine.</text>
            <dbReference type="EC" id="2.7.13.3"/>
        </reaction>
    </comment>
    <dbReference type="EC" id="2.7.13.3" evidence="2"/>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX33493.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012202779.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_0847"/>
    <dbReference type="PRIDE" id="A9BS83"/>
    <dbReference type="EnsemblBacteria" id="ABX33493">
        <property type="protein sequence ID" value="ABX33493"/>
        <property type="gene ID" value="Daci_0847"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_0847"/>
    <dbReference type="eggNOG" id="COG4191">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_011685_1_0_4"/>
    <dbReference type="OMA" id="AWRRWSL"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000155">
        <property type="term" value="F:phosphorelay sensor kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006355">
        <property type="term" value="P:regulation of transcription, DNA-templated"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd00130">
        <property type="entry name" value="PAS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.565.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003594">
        <property type="entry name" value="HATPase_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036890">
        <property type="entry name" value="HATPase_C_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005467">
        <property type="entry name" value="His_kinase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036097">
        <property type="entry name" value="HisK_dim/P_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001610">
        <property type="entry name" value="PAC"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000014">
        <property type="entry name" value="PAS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000700">
        <property type="entry name" value="PAS-assoc_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035965">
        <property type="entry name" value="PAS-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013767">
        <property type="entry name" value="PAS_fold"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004358">
        <property type="entry name" value="Sig_transdc_His_kin-like_C"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02518">
        <property type="entry name" value="HATPase_c"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00989">
        <property type="entry name" value="PAS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00344">
        <property type="entry name" value="BCTRLSENSOR"/>
    </dbReference>
    <dbReference type="SMART" id="SM00387">
        <property type="entry name" value="HATPase_c"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00086">
        <property type="entry name" value="PAC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00091">
        <property type="entry name" value="PAS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47384">
        <property type="entry name" value="SSF47384"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55785">
        <property type="entry name" value="SSF55785"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55874">
        <property type="entry name" value="SSF55874"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00229">
        <property type="entry name" value="sensory_box"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50109">
        <property type="entry name" value="HIS_KIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50113">
        <property type="entry name" value="PAC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50112">
        <property type="entry name" value="PAS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="7" id="KW-0418">Kinase</keyword>
    <keyword evidence="3" id="KW-0472">Membrane</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="7" id="KW-0808">Transferase</keyword>
    <keyword evidence="3" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="3" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="3">
        <location>
            <begin position="21"/>
            <end position="43"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="3">
        <location>
            <begin position="262"/>
            <end position="286"/>
        </location>
    </feature>
    <feature type="domain" description="PAS" evidence="5">
        <location>
            <begin position="301"/>
            <end position="372"/>
        </location>
    </feature>
    <feature type="domain" description="PAC" evidence="6">
        <location>
            <begin position="378"/>
            <end position="430"/>
        </location>
    </feature>
    <feature type="domain" description="Histidine kinase" evidence="4">
        <location>
            <begin position="450"/>
            <end position="683"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00000085"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00012438"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="PROSITE" id="PS50109"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="PROSITE" id="PS50112"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="PROSITE" id="PS50113"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="ABX33493.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="689" mass="77197" checksum="9EC4E000F0F12761" modified="2008-01-15" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="61" xmlns="http://uniprot.org/uniprot">
    <accession>A9BS84</accession>
    <name>A9BS84_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Luciferase family protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_1053</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX33698.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012202984.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_1053"/>
    <dbReference type="PRIDE" id="A9BS84"/>
    <dbReference type="EnsemblBacteria" id="ABX33698">
        <property type="protein sequence ID" value="ABX33698"/>
        <property type="gene ID" value="Daci_1053"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_1053"/>
    <dbReference type="eggNOG" id="COG2141">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_027853_3_1_4"/>
    <dbReference type="OMA" id="VAQHHFH"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016705">
        <property type="term" value="F:oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.20.20.30">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011251">
        <property type="entry name" value="Luciferase-like_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR024003">
        <property type="entry name" value="Luciferase-like_KPN01858"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036661">
        <property type="entry name" value="Luciferase-like_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00296">
        <property type="entry name" value="Bac_luciferase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51679">
        <property type="entry name" value="SSF51679"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR04027">
        <property type="entry name" value="LLM_KPN_01858"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Bac_luciferase" evidence="1">
        <location>
            <begin position="31"/>
            <end position="307"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF00296"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX33698.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="376" mass="39804" checksum="EF78ED11A921F6D5" modified="2008-01-15" version="1">MSLIPPDTHAGATPRNGPRLGFFSRLLDDVPAGERYRLVAEQIAHAEAQGFDSAWVAQHHFHESEGGLPSPFVFLAHVAARTRRIRIGTGVITLPLENALRVAEDAAVLDLLTGGRLEVGLGTGGTAESFEAFGVQGAERGAVFARNFGVLQDAWAGRALAGGVRLYPAAPQLLERVWQATFSAEGGARAGANGDGLMLSRTQPRPEGAPQATLSEIQNPIIDAYLAHLPAGRAPRILGSRTLFVADRRDDALRWAEAGLRRVALRHAAQPSQWAARVDPQAPLADLIAAYDVHVGTPDEVIASLRADTALARVSDIVFQVHSIDPSHAAILRSIELTAAHVAPALGWRRADESTSTSTPAPSSLPAVRAGLLQAA</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="91" xmlns="http://uniprot.org/uniprot">
    <accession>A9BSD7</accession>
    <name>A9BSD7_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="6">Two component transcriptional regulator, LuxR family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ordered locus">Daci_1106</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="7" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX33751.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012203037.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_1106"/>
    <dbReference type="PRIDE" id="A9BSD7"/>
    <dbReference type="EnsemblBacteria" id="ABX33751">
        <property type="protein sequence ID" value="ABX33751"/>
        <property type="gene ID" value="Daci_1106"/>
    </dbReference>
    <dbReference type="GeneID" id="60685671"/>
    <dbReference type="KEGG" id="dac:Daci_1106"/>
    <dbReference type="eggNOG" id="COG2197">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_000445_90_10_4"/>
    <dbReference type="OMA" id="HNVISDG"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000160">
        <property type="term" value="P:phosphorelay signal transduction system"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006355">
        <property type="term" value="P:regulation of transcription, DNA-templated"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd06170">
        <property type="entry name" value="LuxR_C_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011006">
        <property type="entry name" value="CheY-like_superfamily"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016032">
        <property type="entry name" value="Sig_transdc_resp-reg_C-effctor"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001789">
        <property type="entry name" value="Sig_transdc_resp-reg_receiver"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000792">
        <property type="entry name" value="Tscrpt_reg_LuxR_C"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00196">
        <property type="entry name" value="GerE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00072">
        <property type="entry name" value="Response_reg"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00038">
        <property type="entry name" value="HTHLUXR"/>
    </dbReference>
    <dbReference type="SMART" id="SM00421">
        <property type="entry name" value="HTH_LUXR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00448">
        <property type="entry name" value="REC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46894">
        <property type="entry name" value="SSF46894"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52172">
        <property type="entry name" value="SSF52172"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00622">
        <property type="entry name" value="HTH_LUXR_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50043">
        <property type="entry name" value="HTH_LUXR_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50110">
        <property type="entry name" value="RESPONSE_REGULATORY"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="2" id="KW-0597">Phosphoprotein</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Response regulatory" evidence="5">
        <location>
            <begin position="8"/>
            <end position="124"/>
        </location>
    </feature>
    <feature type="domain" description="HTH luxR-type" evidence="4">
        <location>
            <begin position="156"/>
            <end position="221"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="3">
        <location>
            <begin position="143"/>
            <end position="166"/>
        </location>
    </feature>
    <feature type="modified residue" description="4-aspartylphosphate" evidence="2">
        <location>
            <position position="59"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00169"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="PROSITE" id="PS50043"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="PROSITE" id="PS50110"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="ABX33751.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="223" mass="23544" checksum="2201F0505F2A6D88" modified="2008-01-15" version="1">MSFSSPISVFVIDDHTLFRRGLIALIAQDAGLRVVGEAGDAGEALRLVPALAPQVILLDNHLPGVLGVDAIAGLRAASPGSRVVMLTVSEDGQDLAAALRNGAQGYLLKTIDGDLLSEALRRAARGEPVVSPEMMGKLVAAFQSQGAPEPQAPEPDEAPASPLSPREEEVLVQIARGASNKEIARTLDIAETTVKIHVQHILRKLGLSSRVQAAVYASERQRD</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="56" xmlns="http://uniprot.org/uniprot">
    <accession>A9BSI6</accession>
    <name>A9BSI6_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">Peripla_BP_6 domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Daci_1155</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="4" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX33800.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012203086.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_1155"/>
    <dbReference type="PRIDE" id="A9BSI6"/>
    <dbReference type="EnsemblBacteria" id="ABX33800">
        <property type="protein sequence ID" value="ABX33800"/>
        <property type="gene ID" value="Daci_1155"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_1155"/>
    <dbReference type="eggNOG" id="COG0683">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_050369_0_0_4"/>
    <dbReference type="OMA" id="PDYVLLW"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR028081">
        <property type="entry name" value="Leu-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR028082">
        <property type="entry name" value="Peripla_BP_I"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13458">
        <property type="entry name" value="Peripla_BP_6"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53822">
        <property type="entry name" value="SSF53822"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="1">
        <location>
            <begin position="1"/>
            <end position="28"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5002732468" description="Peripla_BP_6 domain-containing protein" evidence="1">
        <location>
            <begin position="29"/>
            <end position="438"/>
        </location>
    </feature>
    <feature type="domain" description="Peripla_BP_6" evidence="2">
        <location>
            <begin position="31"/>
            <end position="398"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF13458"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ABX33800.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="438" mass="48015" checksum="DF2BA84D4870AADA" modified="2008-01-15" version="1">MMFKKVAIAAATVAAGIGALVAAPAAQAQDQFVPLLVYRTGQFAPLGIPWADGKQDYIKLVNAKGGINGVKIAYEECETAYDTAKGVECYERLKGKGGGAAGFDPQSTGITFAVTDKAPGDKMPIITTGYGLSQSADGKVFEWNFPLLGNYWTAADSIIQDILKKEKGSLKGKKIALVYHDSPYGKEPIPLLQKRAAKEGFDLTLLPVTAPGVEQKSTWLQIRQQRPDYVLLWSAGVMTPTAVREAQATGYPREKMYAIWWAGSDHDVKDIGAGAKGYNTVTIHNTAEHDKVHDEVKSMVYDKGQGTATDAKELGAMAHTRGMVISMLQVEAIRTAQEKYGKGKVMTSEQVRWGLENLNLTQERLNELGFGKIIRPVKTSCDNHLGTDWSRIAQWDGAKWKVVSDWYQADKSMVEPLVKEYADKYAKEKNVKARTCTP</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="66" xmlns="http://uniprot.org/uniprot">
    <accession>A9BSP6</accession>
    <name>A9BSP6_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_1407</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX34051.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012203337.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_1407"/>
    <dbReference type="PRIDE" id="A9BSP6"/>
    <dbReference type="EnsemblBacteria" id="ABX34051">
        <property type="protein sequence ID" value="ABX34051"/>
        <property type="gene ID" value="Daci_1407"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_1407"/>
    <dbReference type="eggNOG" id="COG0111">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_019796_1_0_4"/>
    <dbReference type="OMA" id="WNHPRIE"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051287">
        <property type="term" value="F:NAD binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006140">
        <property type="entry name" value="D-isomer_DH_NAD-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036291">
        <property type="entry name" value="NAD(P)-bd_dom_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02826">
        <property type="entry name" value="2-Hacid_dh_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51735">
        <property type="entry name" value="SSF51735"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="2-Hacid_dh_C" evidence="1">
        <location>
            <begin position="102"/>
            <end position="274"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF02826"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX34051.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="309" mass="32982" checksum="A7FFB35B50991757" modified="2008-01-15" version="1">MGILVNIHPSMGAPIVDSLRALAPGVQVWGHREEAPADAVEAMLAWSLKPGVLPAYPGLKLLCAPSAGVDKLLAVPDLPAGLPVARTVDPQQHVEIAQYVVGTALRHTRELDLFARQQQAGDWLRRPVRASADCRVGILGLGEVGRFVAGAMQAIGYPVVGWSRSAKSIAGLATHSGAEGLKQLLSTSDILVCALPLTPETRDLLDRRTLSLLPRGAYFINVGRGEQVVEDDLLALLDEDHLAGAALDVLRDEPPQPGNKVWGHPKAFVTPHIAAQASADTVARQCLENLRRLRAGEPLLNLVDVARGY</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2021-02-10" version="51" xmlns="http://uniprot.org/uniprot">
    <accession>A9BSQ3</accession>
    <name>A9BSQ3_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Transposase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_1414</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX34058.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_1414"/>
    <dbReference type="EnsemblBacteria" id="ABX34058">
        <property type="protein sequence ID" value="ABX34058"/>
        <property type="gene ID" value="Daci_1414"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_1414"/>
    <dbReference type="eggNOG" id="COG2801">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_1265226_0_0_4"/>
    <dbReference type="OMA" id="SERSYCE"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003676">
        <property type="term" value="F:nucleic acid binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015074">
        <property type="term" value="P:DNA integration"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.420.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001584">
        <property type="entry name" value="Integrase_cat-core"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012337">
        <property type="entry name" value="RNaseH-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036397">
        <property type="entry name" value="RNaseH_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13683">
        <property type="entry name" value="rve_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53098">
        <property type="entry name" value="SSF53098"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50994">
        <property type="entry name" value="INTEGRASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Integrase catalytic" evidence="1">
        <location>
            <begin position="1"/>
            <end position="130"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS50994"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX34058.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="218" mass="25190" checksum="EACFB38FEFF5A8FB" modified="2008-01-15" version="1">MPQRASECKGVVNRALTFEQVFRQYGLPERIRSDNGPPFATTGVAGLSRLAIWWIRLGIRPERIERGKPQQNGRHERMHRTLKHALGKEPAADKAALQMQLDAFVEHYNQQRPHEALQQSMPAQHYSDSARPYPSKLPELQYPKHWERVRVSHNGLIYWRALRVYIGYLLAGQWIGMQEVAAGQWDVYLGPVRLGCFNEEDVRGPQKDYVSLKCYPCL</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="34" xmlns="http://uniprot.org/uniprot">
    <accession>A9BSR7</accession>
    <name>A9BSR7_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Putative transmembrane protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Daci_1428</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="2" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX34072.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="PRIDE" id="A9BSR7"/>
    <dbReference type="EnsemblBacteria" id="ABX34072">
        <property type="protein sequence ID" value="ABX34072"/>
        <property type="gene ID" value="Daci_1428"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_1428"/>
    <dbReference type="eggNOG" id="ENOG50331YG">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_1892793_0_0_4"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ABX34072.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="134" mass="14079" checksum="7E43280527C0BE68" modified="2008-01-15" version="1">MPMSASFSISSATTACEGFEFAGSVRDGGEGVLLPWIAALSNKLSGVPTVQEAAVPADAPVQVKGFSFWQDQYSSGSCGPVAKRFTPTADGVYLVDFVWAGMRKCGLRVVDISRSDEPREVPGAPLICPRPPGL</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="74" xmlns="http://uniprot.org/uniprot">
    <accession>A9BT15</accession>
    <name>A9BT15_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="7">Chloride channel core</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ordered locus">Daci_1732</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="8" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX34375.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012203660.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_1732"/>
    <dbReference type="PRIDE" id="A9BT15"/>
    <dbReference type="EnsemblBacteria" id="ABX34375">
        <property type="protein sequence ID" value="ABX34375"/>
        <property type="gene ID" value="Daci_1732"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_1732"/>
    <dbReference type="eggNOG" id="COG0038">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_015263_1_1_4"/>
    <dbReference type="OMA" id="NPYYRVL"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005247">
        <property type="term" value="F:voltage-gated chloride channel activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014743">
        <property type="entry name" value="Cl-channel_core"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001807">
        <property type="entry name" value="Cl-channel_volt-gated"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00654">
        <property type="entry name" value="Voltage_CLC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00762">
        <property type="entry name" value="CLCHANNEL"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF81340">
        <property type="entry name" value="SSF81340"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4 6" id="KW-0472">Membrane</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 6" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="3 6" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="20"/>
            <end position="41"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="53"/>
            <end position="72"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="93"/>
            <end position="112"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="146"/>
            <end position="171"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="183"/>
            <end position="203"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="218"/>
            <end position="240"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="261"/>
            <end position="280"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="300"/>
            <end position="325"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="337"/>
            <end position="359"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="371"/>
            <end position="391"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="5">
        <location>
            <begin position="407"/>
            <end position="431"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="5">
        <location>
            <begin position="409"/>
            <end position="431"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="ABX34375.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="431" mass="46152" checksum="D493BBBA4E242F5D" modified="2008-01-15" version="1">MRKFPHFEQLELLPYLGKWFIFATLVAALAGTASAFFLLSLDLATAWREAHPWIIWLLPFAGMAVGLVYFLLGKRVDGGNNLLIEEIHDPKQVVPLRMVPLVLGGTVISHLFGASVGREGTAVQMGGALADQLTHVFRLHQDDRRVLLMSGISAGFASVFGTPLAGAVFGLEVLAIGRMRYDALFPCIVAAFVADQVCTAWGVHHTHYAMSAVNNIDAWSVVAVIIAGILFGLVGMLFATAVHKIGALVKHLIAYPPLRPFFGGLVIATAVWALDAYRYIGLGIPDIARSFQEPMLPWDFLGKLVFTVASLGTGFKGGEVTPLFYIGATMGNVLAPLLHMPFALMAAIGFVAVFAGAANTPIATTLMAMELFGAGIGPLAAIGCVTAYLFSGHAGIYHAQRIGHSKHHRRSLTGAEVPRRDVEATKTKDPA</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-01-19" version="61" xmlns="http://uniprot.org/uniprot">
    <accession>A9BT66</accession>
    <name>A9BT66_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Phosphate butyryltransferase</fullName>
            <ecNumber evidence="3">2.3.1.19</ecNumber>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Daci_1991</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="4" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the phosphate acetyltransferase and butyryltransferase family.</text>
    </comment>
    <dbReference type="EC" id="2.3.1.19" evidence="3"/>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX34631.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012203916.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_1991"/>
    <dbReference type="EnsemblBacteria" id="ABX34631">
        <property type="protein sequence ID" value="ABX34631"/>
        <property type="gene ID" value="Daci_1991"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_1991"/>
    <dbReference type="eggNOG" id="COG0280">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_056531_1_0_4"/>
    <dbReference type="OMA" id="NPDMPET"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0050182">
        <property type="term" value="F:phosphate butyryltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012147">
        <property type="entry name" value="P_Ac_Bu_trans"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002505">
        <property type="entry name" value="PTA_PTB"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01515">
        <property type="entry name" value="PTA_PTB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF000428">
        <property type="entry name" value="P_Ac_trans"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-0012">Acyltransferase</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="PTA_PTB" evidence="2">
        <location>
            <begin position="98"/>
            <end position="312"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00005656"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF01515"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ABX34631.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="324" mass="33147" checksum="2151E9EF56DB056D" modified="2008-01-15" version="1">MVPPLSLAVAADDAPATHRPHLQHLLDQAKAQGPIPVAVAYPCDAGSLQAAMQAAQAGLITPLLVGPEARIRASAQAAGLDLAGASIHSTADDPRAAAAQAAALCGSGQARALMKGSLHSDELLGAAVAREAGLRGSRRASHVFVMDLPGFERPLLMTDCVVNIFPTLMDKRDIAQNAIDLARAIGIARPRVAVLSAVETVNPAIPGTIDAAALCKMADRGQISGAILDGPLAYDNAISLRSAHHKGIVSDVAGQPDVLLVPSLEAGNMIYKQLVYMADAECAGLVLGMRVPIVLTSRSDSVASRIASCALAVLADAAGGKEQP</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="78" xmlns="http://uniprot.org/uniprot">
    <accession>A9BTF6</accession>
    <name>A9BTF6_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Short-chain dehydrogenase/reductase SDR</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Daci_2285</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="2" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX34924.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012204207.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_2285"/>
    <dbReference type="PRIDE" id="A9BTF6"/>
    <dbReference type="EnsemblBacteria" id="ABX34924">
        <property type="protein sequence ID" value="ABX34924"/>
        <property type="gene ID" value="Daci_2285"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_2285"/>
    <dbReference type="eggNOG" id="COG1028">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_010194_1_2_4"/>
    <dbReference type="OMA" id="ATPFHER"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036291">
        <property type="entry name" value="NAD(P)-bd_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002347">
        <property type="entry name" value="SDR_fam"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00081">
        <property type="entry name" value="GDHRDH"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00080">
        <property type="entry name" value="SDRFAMILY"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51735">
        <property type="entry name" value="SSF51735"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ABX34924.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="255" mass="26822" checksum="D72BA6446C0D801A" modified="2008-01-15" version="1">MSAPENFPIRTALVTGAARGIGLATAIELLRDGRRVVLADLAAPDLDLVPQELRARASAVVLDVCDEAARQRVVADMVQRHGGVDILVNNAGISLKNASGQSNGILEVGLGEVQQILDVNLLSMLRLCQLALPGMKQRGWGRIVNVSSLAGRGKSIVAGPAYMLSKSAVLGLSRSIASEMGQYGITTNCVAPGRILTPMAQQAGDEVNRRYAEQIPVRRLGEAAEVGAAIRYLCSESAGFTNGAVIDVNGGFFMN</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="67" xmlns="http://uniprot.org/uniprot">
    <accession>A9BTH1</accession>
    <name>A9BTH1_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_2301</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX34939.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012204222.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_2301"/>
    <dbReference type="PRIDE" id="A9BTH1"/>
    <dbReference type="EnsemblBacteria" id="ABX34939">
        <property type="protein sequence ID" value="ABX34939"/>
        <property type="gene ID" value="Daci_2301"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_2301"/>
    <dbReference type="eggNOG" id="COG0631">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_076319_1_0_4"/>
    <dbReference type="OMA" id="AYEDAAH"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.60.40.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036457">
        <property type="entry name" value="PPM-type_dom_sf"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF81606">
        <property type="entry name" value="SSF81606"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="22"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="1"/>
            <end position="18"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX34939.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="251" mass="27732" checksum="FC53EBD2E65AE468" modified="2008-01-15" version="1">MKREFAGTCPKESQEPESNEDQSAFAEDCSRFALCDGASESYNSRLWAKMLAEKFAANPAFGPKWLAEALRDYIAGHDFEAMTWSQHAGFDRGSFSTLLGVEFDSERRTVDVLAIGDCVAVLVDGERFVEAWPFSDAERFKDPPTLLATKSEHNAFVSELGFWTQSFKTFHLGALAAPRLVCMTDALAEWTLRGVRDGESTLGRLLSLTTEAELVELVLEARAAKRMRVDDSTLVIVSFSTPSNTDVLPVA</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="62" xmlns="http://uniprot.org/uniprot">
    <accession>A9BTJ6</accession>
    <name>A9BTJ6_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="12">MscS Mechanosensitive ion channel</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="12" type="ordered locus">Daci_2326</name>
    </gene>
    <organism evidence="12 13">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="12 13" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="13">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="13" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="13">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the MscS (TC 1.A.23) family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX34964.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012204246.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_2326"/>
    <dbReference type="PRIDE" id="A9BTJ6"/>
    <dbReference type="EnsemblBacteria" id="ABX34964">
        <property type="protein sequence ID" value="ABX34964"/>
        <property type="gene ID" value="Daci_2326"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_2326"/>
    <dbReference type="eggNOG" id="COG3064">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="eggNOG" id="COG3264">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_007829_0_0_4"/>
    <dbReference type="OMA" id="YWVWSDL"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0055085">
        <property type="term" value="P:transmembrane transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.30.30.60">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010920">
        <property type="entry name" value="LSM_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006685">
        <property type="entry name" value="MscS_channel"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011066">
        <property type="entry name" value="MscS_channel_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006686">
        <property type="entry name" value="MscS_channel_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011014">
        <property type="entry name" value="MscS_channel_TM-2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023408">
        <property type="entry name" value="MscS_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025692">
        <property type="entry name" value="MscS_IM_dom1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00924">
        <property type="entry name" value="MS_channel"/>
        <property type="match status" value="1"/>
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    </dbReference>
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        <property type="entry name" value="UPF0003"/>
        <property type="match status" value="1"/>
    </dbReference>
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    <keyword evidence="13" id="KW-1185">Reference proteome</keyword>
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    <keyword evidence="5 9" id="KW-1133">Transmembrane helix</keyword>
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        <location>
            <begin position="1"/>
            <end position="25"/>
        </location>
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            <end position="1127"/>
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            <end position="527"/>
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            <begin position="548"/>
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            <begin position="635"/>
            <end position="652"/>
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        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
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        <source>
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        </source>
    </evidence>
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        <source>
            <dbReference type="EMBL" id="ABX34964.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="13">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="1127" mass="122985" checksum="C8EBB4BBD77A3C00" modified="2008-01-15" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="48" xmlns="http://uniprot.org/uniprot">
    <accession>A9BU11</accession>
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        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
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    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
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                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
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            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="4" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
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            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
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            <begin position="510"/>
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            <begin position="198"/>
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    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="2">
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            <begin position="455"/>
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    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
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        <source>
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    </evidence>
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        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="553" mass="59995" checksum="6E9D680863CEB214" modified="2008-01-15" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="94" xmlns="http://uniprot.org/uniprot">
    <accession>A9BUH0</accession>
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        <alternativeName>
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            <taxon>Bacteria</taxon>
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        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
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                <person name="Fischer K."/>
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            <dbReference type="PubMed" id="15240283"/>
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        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="17">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="17" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
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                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="17">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="2">Mediates magnesium influx to the cytosol.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>ATP + H2O + Mg(2+)(out) = ADP + H(+) + Mg(2+)(in) + phosphate</text>
            <dbReference type="Rhea" id="RHEA:10260"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:43474"/>
            <dbReference type="ChEBI" id="CHEBI:456216"/>
            <dbReference type="EC" id="7.2.2.14"/>
        </reaction>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="3">Cell inner membrane</location>
            <topology evidence="3">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="4">Belongs to the cation transport ATPase (P-type) (TC 3.A.3) family. Type IIIB subfamily.</text>
    </comment>
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        <property type="protein sequence ID" value="ABX33873.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
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        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_1229"/>
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    <dbReference type="EnsemblBacteria" id="ABX33873">
        <property type="protein sequence ID" value="ABX33873"/>
        <property type="gene ID" value="Daci_1229"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_1229"/>
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    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016887">
        <property type="term" value="F:ATP hydrolysis activity"/>
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        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015444">
        <property type="term" value="F:P-type magnesium transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
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    </dbReference>
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        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.1000">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004014">
        <property type="entry name" value="ATPase_P-typ_cation-transptr_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023299">
        <property type="entry name" value="ATPase_P-typ_cyto_dom_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018303">
        <property type="entry name" value="ATPase_P-typ_P_site"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023298">
        <property type="entry name" value="ATPase_P-typ_TM_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008250">
        <property type="entry name" value="ATPase_P-typ_transduc_dom_A_sf"/>
    </dbReference>
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        <property type="entry name" value="HAD-like_sf"/>
    </dbReference>
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        <property type="entry name" value="HAD_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006415">
        <property type="entry name" value="P-type_ATPase_IIIB"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001757">
        <property type="entry name" value="P_typ_ATPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR044492">
        <property type="entry name" value="P_typ_ATPase_HD_dom"/>
    </dbReference>
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        <property type="entry name" value="Cation_ATPase_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR01836">
        <property type="entry name" value="MGATPASE"/>
    </dbReference>
    <dbReference type="SFLD" id="SFLDF00027">
        <property type="entry name" value="p-type_atpase"/>
        <property type="match status" value="1"/>
    </dbReference>
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        <property type="entry name" value="Cation_ATPase_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56784">
        <property type="entry name" value="SSF56784"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF81653">
        <property type="entry name" value="SSF81653"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF81660">
        <property type="entry name" value="SSF81660"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF81665">
        <property type="entry name" value="SSF81665"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01524">
        <property type="entry name" value="ATPase-IIIB_Mg"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01494">
        <property type="entry name" value="ATPase_P-type"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00154">
        <property type="entry name" value="ATPASE_E1_E2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="9" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="16" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="12 14" id="KW-0472">Membrane</keyword>
    <keyword evidence="8" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="17" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="10" id="KW-1278">Translocase</keyword>
    <keyword evidence="7 14" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="11 14" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="14">
        <location>
            <begin position="731"/>
            <end position="753"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="14">
        <location>
            <begin position="789"/>
            <end position="812"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="14">
        <location>
            <begin position="824"/>
            <end position="844"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="14">
        <location>
            <begin position="856"/>
            <end position="878"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="14">
        <location>
            <begin position="890"/>
            <end position="908"/>
        </location>
    </feature>
    <feature type="domain" description="Cation_ATPase_N" evidence="15">
        <location>
            <begin position="48"/>
            <end position="121"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001857"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00003954"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00004429"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00008746"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00012786"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00013555"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00022967"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="12">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="13">
        <source>
            <dbReference type="ARBA" id="ARBA00029806"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="14">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="15">
        <source>
            <dbReference type="SMART" id="SM00831"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="16">
        <source>
            <dbReference type="EMBL" id="ABX33873.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="17">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="919" mass="101259" checksum="34944AA920830845" modified="2008-01-15" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="63" xmlns="http://uniprot.org/uniprot">
    <accession>A9BUT6</accession>
    <name>A9BUT6_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Heavy metal efflux pump, CzcA family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ordered locus">Daci_1550</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="6" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX34194.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012203480.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_1550"/>
    <dbReference type="PRIDE" id="A9BUT6"/>
    <dbReference type="EnsemblBacteria" id="ABX34194">
        <property type="protein sequence ID" value="ABX34194"/>
        <property type="gene ID" value="Daci_1550"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_1550"/>
    <dbReference type="eggNOG" id="COG3696">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_002755_1_2_4"/>
    <dbReference type="OMA" id="TMIARAD"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008324">
        <property type="term" value="F:cation transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.2090.10">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027463">
        <property type="entry name" value="AcrB_DN_DC_subdom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001036">
        <property type="entry name" value="Acrflvin-R"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004763">
        <property type="entry name" value="CzcA/CusA/SilA/NccA/HelA/CnrA"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR32063">
        <property type="entry name" value="PTHR32063"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00873">
        <property type="entry name" value="ACR_tran"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00702">
        <property type="entry name" value="ACRIFLAVINRP"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF82714">
        <property type="entry name" value="SSF82714"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00914">
        <property type="entry name" value="2A0601"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-0472">Membrane</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="4" id="KW-1133">Transmembrane helix</keyword>
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        <location>
            <begin position="335"/>
            <end position="354"/>
        </location>
    </feature>
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        <location>
            <begin position="361"/>
            <end position="381"/>
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    </feature>
    <feature type="transmembrane region" description="Helical" evidence="4">
        <location>
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            <end position="406"/>
        </location>
    </feature>
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        <location>
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            <end position="449"/>
        </location>
    </feature>
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        <location>
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            <end position="492"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="4">
        <location>
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        </location>
    </feature>
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        </location>
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        <location>
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        </location>
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        <location>
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            <end position="933"/>
        </location>
    </feature>
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        <location>
            <begin position="962"/>
            <end position="984"/>
        </location>
    </feature>
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        <location>
            <begin position="990"/>
            <end position="1016"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="3">
        <location>
            <begin position="1026"/>
            <end position="1057"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="3">
        <location>
            <begin position="1026"/>
            <end position="1051"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00010942"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="ABX34194.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="1057" mass="114051" checksum="2707420925604F43" modified="2008-01-15" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="61" xmlns="http://uniprot.org/uniprot">
    <accession>A9BVA0</accession>
    <name>A9BVA0_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Arc domain protein DNA binding domain protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_2124</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
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        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
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                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
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            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX34764.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012204047.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="PRIDE" id="A9BVA0"/>
    <dbReference type="EnsemblBacteria" id="ABX34764">
        <property type="protein sequence ID" value="ABX34764"/>
        <property type="gene ID" value="Daci_2124"/>
    </dbReference>
    <dbReference type="GeneID" id="60686522"/>
    <dbReference type="KEGG" id="dac:Daci_2124"/>
    <dbReference type="eggNOG" id="ENOG5031DR9">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_171568_1_0_4"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006355">
        <property type="term" value="P:regulation of transcription, DNA-templated"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
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    </dbReference>
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        <property type="entry name" value="Arc_DNA-bd_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013321">
        <property type="entry name" value="Arc_rbn_hlx_hlx"/>
    </dbReference>
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        <property type="entry name" value="Ribbon_hlx_hlx"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03869">
        <property type="entry name" value="Arc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47598">
        <property type="entry name" value="SSF47598"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Arc" evidence="1">
        <location>
            <begin position="3"/>
            <end position="44"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF03869"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX34764.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="109" mass="11877" checksum="08BCD950EC988EAA" modified="2008-01-15" version="1">MKQTDPQYKLRLPQELKDLVEEAAKRTGRSMNAEVVARLQTTFEAPLLGRLSAATDPALECEEPVSIYDIKMSAEAVERIEKRLERIEQAVLPPAAPGSANEDGAAGAD</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="75" xmlns="http://uniprot.org/uniprot">
    <accession>A9BVE2</accession>
    <name>A9BVE2_DELAS</name>
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        <submittedName>
            <fullName evidence="8">Amino acid permease-associated region</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="8" type="ordered locus">Daci_2166</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
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                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="9" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX34806.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012204089.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_2166"/>
    <dbReference type="PRIDE" id="A9BVE2"/>
    <dbReference type="EnsemblBacteria" id="ABX34806">
        <property type="protein sequence ID" value="ABX34806"/>
        <property type="gene ID" value="Daci_2166"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_2166"/>
    <dbReference type="eggNOG" id="COG1113">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_007946_9_3_4"/>
    <dbReference type="OMA" id="QIVFRRR"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006865">
        <property type="term" value="P:amino acid transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0055085">
        <property type="term" value="P:transmembrane transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004841">
        <property type="entry name" value="AA-permease/SLC12A_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004840">
        <property type="entry name" value="Amoino_acid_permease_CS"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00324">
        <property type="entry name" value="AA_permease"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00218">
        <property type="entry name" value="AMINO_ACID_PERMEASE_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="5 6" id="KW-0472">Membrane</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 6" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="4 6" id="KW-1133">Transmembrane helix</keyword>
    <keyword evidence="2" id="KW-0813">Transport</keyword>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="20"/>
            <end position="46"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="52"/>
            <end position="70"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="100"/>
            <end position="125"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="131"/>
            <end position="152"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="164"/>
            <end position="183"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="203"/>
            <end position="226"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="247"/>
            <end position="265"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="285"/>
            <end position="308"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="334"/>
            <end position="355"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="361"/>
            <end position="386"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="406"/>
            <end position="426"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="432"/>
            <end position="451"/>
        </location>
    </feature>
    <feature type="domain" description="AA_permease" evidence="7">
        <location>
            <begin position="23"/>
            <end position="431"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022448"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="Pfam" id="PF00324"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="ABX34806.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="462" mass="50182" checksum="EB227001DDF7F060" modified="2008-01-15" version="1">MAAFQDIQQRETGLRQQLSAAQMVMIAIGGAIGTGLFMGSAFAIGFAGPSVLVSYAIGALISLLLMGCLAEMTVAHPTSGSFGAYAEHYISPLAGFMVRYAYWAAVVLAVGMEVTAIGIYMGYWFPDVPRWIWVVVFSGALVAVNASSVKAFGQVEYGFSMVKIIAIVAFILIGAWVVFGSQPQGIGFFNYTADGGFFPKGLWGTWVAVIIAIFSYLSLEAVAVAAGEAEDPKRAITRAFRTTMARLVIFYLATIALMLAIVPWQQAGTDKSPFVKVMEIIGIPGAASIINFVVLVAALSAMNSQLYVTSRMMFSLSRGGYAPSVFGRLNSRGVPVAAIAISCLGIAVAVAVNLWKPEGSLLWMMSVSMFGAMFTWFMIFVTHLFFRARWSREHPGQRLQFRMWGFPLFTLAGAALMLGVIVTTYFTEVFHMTLLTGLPFLGLLALVYALWYRPRAQARKKD</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="54" xmlns="http://uniprot.org/uniprot">
    <accession>A9BVF8</accession>
    <name>A9BVF8_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Histone deacetylase superfamily</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Daci_2387</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="4" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the histone deacetylase family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX35025.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_2387"/>
    <dbReference type="PRIDE" id="A9BVF8"/>
    <dbReference type="EnsemblBacteria" id="ABX35025">
        <property type="protein sequence ID" value="ABX35025"/>
        <property type="gene ID" value="Daci_2387"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_2387"/>
    <dbReference type="eggNOG" id="COG0123">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_007727_8_1_4"/>
    <dbReference type="OMA" id="GRAMGFC"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.800.20">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000286">
        <property type="entry name" value="His_deacetylse"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023801">
        <property type="entry name" value="His_deacetylse_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037138">
        <property type="entry name" value="His_deacetylse_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023696">
        <property type="entry name" value="Ureohydrolase_dom_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00850">
        <property type="entry name" value="Hist_deacetyl"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR01270">
        <property type="entry name" value="HDASUPER"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52768">
        <property type="entry name" value="SSF52768"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Hist_deacetyl" evidence="2">
        <location>
            <begin position="21"/>
            <end position="313"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00005947"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF00850"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ABX35025.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="317" mass="34964" checksum="AA1426555635BD53" modified="2008-01-15" version="1">MGKTGYFTHRECWRHEMGPGHPECPARLDAIEDRLLVTGVADALERHEAPQASLADIELAHDRMHVAALQGLTQRLVEEQQAGGPEYSQIDTDTSINSHTFSAALHAAGAALAATDAVMAGELENAFCAVRPPGHHATRHQAMGFCFFNNVAVGVKYALSRHHLKRVAVIDFDVHHGNGTEDILSGDDRVLMCGIFQHPFYPFSGDQHPAANMVNVPVAAYTKGMDIREIVEMMWIPRLEAFKPELIFISAGFDAHREDDMGQLGMTEQDFTWITSRIKDIARRFSKGRIVSCLEGGYVMGPLARSVEAHVRVLADL</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2021-06-02" version="41" xmlns="http://uniprot.org/uniprot">
    <accession>A9BVL0</accession>
    <name>A9BVL0_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_2439</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX35077.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012204359.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_2439"/>
    <dbReference type="EnsemblBacteria" id="ABX35077">
        <property type="protein sequence ID" value="ABX35077"/>
        <property type="gene ID" value="Daci_2439"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_2439"/>
    <dbReference type="eggNOG" id="ENOG5032RR5">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_134369_1_0_4"/>
    <dbReference type="OMA" id="MWADAAS"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="42"/>
            <end position="61"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="73"/>
            <end position="94"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="100"/>
            <end position="120"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX35077.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="141" mass="14612" checksum="D2CA21BCD625560B" modified="2008-01-15" version="1">MSMFASPRFLPRVMWADAASCAASGALQLVAGQPLSDVTGLPLALLQSTGWFLLGYALLAAWMAARSPVPRRLIGLVVVGNLGWAVGCVALLAFGGLGLSAWGVAWVLGQALVVVVLAELQWTGLRRTRDVVGGARSVVVG</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="55" xmlns="http://uniprot.org/uniprot">
    <accession>A9BVM2</accession>
    <name>A9BVM2_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Daci_2451</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="4" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Periplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the UPF0065 (bug) family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX35089.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012204371.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_2451"/>
    <dbReference type="PRIDE" id="A9BVM2"/>
    <dbReference type="EnsemblBacteria" id="ABX35089">
        <property type="protein sequence ID" value="ABX35089"/>
        <property type="gene ID" value="Daci_2451"/>
    </dbReference>
    <dbReference type="GeneID" id="60686818"/>
    <dbReference type="KEGG" id="dac:Daci_2451"/>
    <dbReference type="eggNOG" id="COG3181">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_045683_0_3_4"/>
    <dbReference type="OMA" id="PIGDITQ"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0042597">
        <property type="term" value="C:periplasmic space"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.190.150">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005064">
        <property type="entry name" value="BUG"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR042100">
        <property type="entry name" value="Bug_dom1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006311">
        <property type="entry name" value="TAT_signal"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR42928">
        <property type="entry name" value="PTHR42928"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03401">
        <property type="entry name" value="TctC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF017082">
        <property type="entry name" value="YflP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51318">
        <property type="entry name" value="TAT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004418"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00006987"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ABX35089.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="330" mass="34341" checksum="44FDE3A7C0AB7A85" modified="2008-01-15" version="1">MNIDRRQWLGTAGAGALLASLGQQAWAQAQGPIETLNIITGFAAGGTSDAICRRVGTKLSGYAKTAVVENRTGAGGQIAISYVKGRPADGATLLQTPTSMLSIYPHIYKKLPYDPVADLAPVTVGCIFDFGFAVGPAVPASVTTVPEFFAWAKANPAGANFGSPAPGSTPHFIGALLGQHAGVDFKHAGYRGTQPALLDMLGGNVSAVCGPVGDMLQHLAGGKMRILGVSGAKRSRFAPQVPTLVEQGYKDMAHSEWFAFFVPAKTPAETVQRLNGHMRKALATPDVVDSLATFGLDAQSSTPAELAALLQSELAKWGPIVKRVGFTAEG</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2021-02-10" version="47" xmlns="http://uniprot.org/uniprot">
    <accession>A9BVP9</accession>
    <name>A9BVP9_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Cytochrome oxidase maturation protein, cbb3-type</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_2774</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX35412.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_2774"/>
    <dbReference type="EnsemblBacteria" id="ABX35412">
        <property type="protein sequence ID" value="ABX35412"/>
        <property type="gene ID" value="Daci_2774"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_2774"/>
    <dbReference type="eggNOG" id="COG3197">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_176840_4_2_4"/>
    <dbReference type="OMA" id="WDSENLM"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004714">
        <property type="entry name" value="Cyt_oxidase_maturation_cbb3"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03597">
        <property type="entry name" value="FixS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00847">
        <property type="entry name" value="ccoS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="12"/>
            <end position="36"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX35412.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="55" mass="6398" checksum="F55B4AE715E41A1E" modified="2008-01-15" version="1">MARQRHGELTMDILYLLIPLSVVLVLAILAALWWAVYRGQFESVEQEGERILRDD</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="50" xmlns="http://uniprot.org/uniprot">
    <accession>A9BVQ5</accession>
    <name>A9BVQ5_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Daci_2780</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="4" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX35418.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012204628.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_2780"/>
    <dbReference type="PRIDE" id="A9BVQ5"/>
    <dbReference type="EnsemblBacteria" id="ABX35418">
        <property type="protein sequence ID" value="ABX35418"/>
        <property type="gene ID" value="Daci_2780"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_2780"/>
    <dbReference type="eggNOG" id="COG3198">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_190053_0_0_4"/>
    <dbReference type="OMA" id="AGFVTLW"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008620">
        <property type="entry name" value="FixH"/>
    </dbReference>
    <dbReference type="Pfam" id="PF05751">
        <property type="entry name" value="FixH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="2" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="29"/>
            <end position="51"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="82"/>
            <end position="104"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ABX35418.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="104" mass="10850" checksum="B216A88D035CF41A" modified="2008-01-15" version="1">MSSSPAVSAPAQAPSHPDAGKPWWKFGHVWLVVAGPAAVVVAAVITAIIAINGADPVIDPDYYRNGITINERADGVREVPKSMAPAVTGRNHAATPAHDHPTDR</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-01-19" version="55" xmlns="http://uniprot.org/uniprot">
    <accession>A9BVQ9</accession>
    <name>A9BVQ9_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">DsbD_2 domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Daci_2784</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="4" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX35422.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012204632.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_2784"/>
    <dbReference type="EnsemblBacteria" id="ABX35422">
        <property type="protein sequence ID" value="ABX35422"/>
        <property type="gene ID" value="Daci_2784"/>
    </dbReference>
    <dbReference type="GeneID" id="60687049"/>
    <dbReference type="KEGG" id="dac:Daci_2784"/>
    <dbReference type="eggNOG" id="COG2836">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_032635_0_0_4"/>
    <dbReference type="OMA" id="GRISTYM"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR039447">
        <property type="entry name" value="UreH-like_TM_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13386">
        <property type="entry name" value="DsbD_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="143"/>
            <end position="165"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="172"/>
            <end position="192"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="212"/>
            <end position="231"/>
        </location>
    </feature>
    <feature type="domain" description="DsbD_2" evidence="2">
        <location>
            <begin position="8"/>
            <end position="223"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF13386"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ABX35422.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="238" mass="25049" checksum="1F6D1765793686D5" modified="2008-01-15" version="1">MLLSLLWTALIMGLVGGPHCLAMCAAPCGVVTGGAGQGGGSQVVAVHGLQSRLWLRTALFHGGRLAGYASLGAASALAMESLSWLTSQTTALQPFWTLTHVAVMAWGLAMMVQARQPAWLESAGRAAWRRVQPWVSAPGGTLAAGYAWALMPCGLLYSAVLVAALSGGPLQGALAMAAFGVGSGLWLVAGPWLWRLGRQRLNGLRAEWGTRLAGLMLVGVAVWALWMDLIYKPSLWCR</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="54" xmlns="http://uniprot.org/uniprot">
    <accession>A9BVS6</accession>
    <name>A9BVS6_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Asp/Glu racemase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Daci_2801</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="2" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX35439.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012204649.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_2801"/>
    <dbReference type="PRIDE" id="A9BVS6"/>
    <dbReference type="EnsemblBacteria" id="ABX35439">
        <property type="protein sequence ID" value="ABX35439"/>
        <property type="gene ID" value="Daci_2801"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_2801"/>
    <dbReference type="eggNOG" id="COG4126">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_079356_0_1_4"/>
    <dbReference type="OMA" id="CEGAFEA"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0036361">
        <property type="term" value="F:racemase activity, acting on amino acids and derivatives"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006807">
        <property type="term" value="P:nitrogen compound metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015942">
        <property type="entry name" value="Asp/Glu/hydantoin_racemase"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01177">
        <property type="entry name" value="Asp_Glu_race"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ABX35439.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="218" mass="23101" checksum="4088F544BD2721BB" modified="2008-01-15" version="1">MTRIALIHALSHSVAPINEAFARDWPEAVRMNLLDDSLSADLARNGRGLDAAMHERFQRLAQYAVDTGAQGILFTCSAFGPCIEAVAARHAPLPVLKPNEAMIEEAVQGQQGALGLISSFAPTLQSMPPEFPAGIELVPALADGAMDALNRGDTATHDRLVVEQARVLAARGCTRIALAQFSMARARAACEAATGLPVLTTVDSAVRALQRRLGVRLG</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="54" xmlns="http://uniprot.org/uniprot">
    <accession>A9BW94</accession>
    <name>A9BW94_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Anti-FecI sigma factor, FecR</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ordered locus">Daci_3272</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="5" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX35910.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_3272"/>
    <dbReference type="PRIDE" id="A9BW94"/>
    <dbReference type="EnsemblBacteria" id="ABX35910">
        <property type="protein sequence ID" value="ABX35910"/>
        <property type="gene ID" value="Daci_3272"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_3272"/>
    <dbReference type="eggNOG" id="COG3712">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_050192_0_0_4"/>
    <dbReference type="OMA" id="LDADYHN"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006860">
        <property type="entry name" value="FecR"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR032623">
        <property type="entry name" value="FecR_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012373">
        <property type="entry name" value="Ferrdict_sens_TM"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30273">
        <property type="entry name" value="PTHR30273"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF16220">
        <property type="entry name" value="DUF4880"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04773">
        <property type="entry name" value="FecR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF018266">
        <property type="entry name" value="FecR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="82"/>
            <end position="100"/>
        </location>
    </feature>
    <feature type="domain" description="DUF4880" evidence="3">
        <location>
            <begin position="11"/>
            <end position="53"/>
        </location>
    </feature>
    <feature type="domain" description="FecR" evidence="2">
        <location>
            <begin position="111"/>
            <end position="211"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF04773"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF16220"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="ABX35910.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="327" mass="35402" checksum="AF154FE4B180D08D" modified="2008-01-15" version="1">METPLQARVLDEAAEWLMRLHDSGATDADRAACERWRQADPQHALAWERAERLLGKLGGLPAALAMPALDRPRSHRAQRRAAVARLAALLAVAPASWLVWSAADQRGWGADLRTATGERRTEHLADGSRLLLDTASAVDIRFDGALRLLTLRQGAISIETAADTATPRRPFVVDTAHGRLRALGTRFTVRQEGGRADGGPVRLAVTEGAVEVTLRGAAHPALVVQAGQQTVLRAGEVTAPQPLQPEVTAWTHGMLMADAMPLAAFCAELSRYRPGLLQCAPEVRALRVSGSFPLGDTDRTLTMLASTYPVDVQTRMRGYWITVVARN</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-01-19" version="79" xmlns="http://uniprot.org/uniprot">
    <accession>A9BWH4</accession>
    <name>A9BWH4_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="10">Putative fluoride ion transporter CrcB</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="10" type="primary">crcB</name>
        <name evidence="11" type="ordered locus">Daci_3560</name>
    </gene>
    <organism evidence="11 12">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="11 12" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="12">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="12" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="12">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="1 10">Important for reducing fluoride concentration in the cell, thus reducing its toxicity.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="10">Cell inner membrane</location>
            <topology evidence="10">Multi-pass membrane protein</topology>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="2">Membrane</location>
            <topology evidence="2">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="3 10">Belongs to the CrcB (TC 9.B.71) family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX36194.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012205394.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_3560"/>
    <dbReference type="EnsemblBacteria" id="ABX36194">
        <property type="protein sequence ID" value="ABX36194"/>
        <property type="gene ID" value="Daci_3560"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_3560"/>
    <dbReference type="eggNOG" id="COG0239">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_114342_2_3_4"/>
    <dbReference type="OMA" id="EVMDKDH"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005887">
        <property type="term" value="C:integral component of plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:1903425">
        <property type="term" value="F:fluoride transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00454">
        <property type="entry name" value="CrcB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003691">
        <property type="entry name" value="CrcB"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR28259">
        <property type="entry name" value="PTHR28259"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02537">
        <property type="entry name" value="CRCB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00494">
        <property type="entry name" value="crcB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="6 10" id="KW-0997">Cell inner membrane</keyword>
    <keyword evidence="5 10" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="9 10" id="KW-0472">Membrane</keyword>
    <keyword evidence="12" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="7 10" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="8 10" id="KW-1133">Transmembrane helix</keyword>
    <keyword evidence="4 10" id="KW-0813">Transport</keyword>
    <feature type="transmembrane region" description="Helical" evidence="10">
        <location>
            <begin position="34"/>
            <end position="57"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="10">
        <location>
            <begin position="69"/>
            <end position="87"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="10">
        <location>
            <begin position="99"/>
            <end position="123"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004023"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00007610"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022448"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022519"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00454"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="EMBL" id="ABX36194.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="128" mass="13373" checksum="60BF521C464BAA73" modified="2008-01-15" version="1">MGFYGFILVFVGGGLGSALRHGANLLALRLVGSAYPLGTLAINVLGAFVMGVVVEWFALKTSLPQSARLFITTGILGGFTTFSTYALEVGMLYERGDWLASVLYALGSLVLGVAALFAGLGLVRMVAH</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2021-06-02" version="56" xmlns="http://uniprot.org/uniprot">
    <accession>A9BX09</accession>
    <name>A9BX09_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Glutathione-dependent formaldehyde-activating GFA</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ordered locus">Daci_4363</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="5" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the Gfa family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX36994.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012206166.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_4363"/>
    <dbReference type="EnsemblBacteria" id="ABX36994">
        <property type="protein sequence ID" value="ABX36994"/>
        <property type="gene ID" value="Daci_4363"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_4363"/>
    <dbReference type="eggNOG" id="COG3791">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_055491_4_1_4"/>
    <dbReference type="OMA" id="ACHCSMC"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016846">
        <property type="term" value="F:carbon-sulfur lyase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006913">
        <property type="entry name" value="CENP-V/GFA"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011057">
        <property type="entry name" value="Mss4-like_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04828">
        <property type="entry name" value="GFA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51316">
        <property type="entry name" value="SSF51316"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51891">
        <property type="entry name" value="CENP_V_GFA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="CENP-V/GFA" evidence="3">
        <location>
            <begin position="1"/>
            <end position="112"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00005495"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="PROSITE" id="PS51891"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="ABX36994.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="134" mass="14862" checksum="B2D8FBB7A126AD4C" modified="2008-01-15" version="1">MNGHCLCGAVSFVSPQAREIGACHCGYCRRWGGGPMLTVHCGPDVKFEGGENIGTYASSEWAERAFCRQCGTHLYYRLHATGEYFVPAGAFESQDFELATQIYIDRKPGYYDFANQTPTMTEAEVIAQYAPPQE</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="75" xmlns="http://uniprot.org/uniprot">
    <accession>A9BXE4</accession>
    <name>A9BXE4_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="6">PfkB domain protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ordered locus">Daci_5591</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="7" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1 4">Belongs to the carbohydrate kinase PfkB family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX38220.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012207389.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_5591"/>
    <dbReference type="PRIDE" id="A9BXE4"/>
    <dbReference type="EnsemblBacteria" id="ABX38220">
        <property type="protein sequence ID" value="ABX38220"/>
        <property type="gene ID" value="Daci_5591"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_5591"/>
    <dbReference type="eggNOG" id="COG0524">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_027634_6_2_4"/>
    <dbReference type="OMA" id="NWRPTFW"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016301">
        <property type="term" value="F:kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016773">
        <property type="term" value="F:phosphotransferase activity, alcohol group as acceptor"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016310">
        <property type="term" value="P:phosphorylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.1190.20">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002173">
        <property type="entry name" value="Carboh/pur_kinase_PfkB_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011611">
        <property type="entry name" value="PfkB_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002139">
        <property type="entry name" value="Ribo/fructo_kinase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029056">
        <property type="entry name" value="Ribokinase-like"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00294">
        <property type="entry name" value="PfkB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00990">
        <property type="entry name" value="RIBOKINASE"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53613">
        <property type="entry name" value="SSF53613"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00584">
        <property type="entry name" value="PFKB_KINASES_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3 4" id="KW-0418">Kinase</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 4" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="PfkB" evidence="5">
        <location>
            <begin position="6"/>
            <end position="299"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00010688"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022777"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="RuleBase" id="RU003704"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="Pfam" id="PF00294"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="ABX38220.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="314" mass="33081" checksum="F7A803B0D81A1337" modified="2008-01-15" version="1">MRIAIAGEALIDFTATGGLAFQGHEGGAPANCAVAAARLGQATGFVSQLSRDLFGERLFAHLQGNGVDMRLVQRCDAPSTLAFVEHAQGTNRYAFYTQATADTLWAPAQLPELPPECRYLQFGSIALLHSPAGPRILDLVAAERGRRIIVFDPNVRPTLIRDAQAFRRDCLGWLAQADLVKLSDEDLAFIAPGVPVLEAATRWLALGPRAVVLTRGAAGATLLRAGQAPVSVQPPAVQLVDTIGAGDTFGAALSVALLEQGVEQPGQLQELPESAWRQVLRFAATAAALNCTRAGAQPPRRAELDAALAAHCGG</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="64" xmlns="http://uniprot.org/uniprot">
    <accession>A9BXG1</accession>
    <name>A9BXG1_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Cytidyltransferase-related domain protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_5608</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX38237.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_5608"/>
    <dbReference type="PRIDE" id="A9BXG1"/>
    <dbReference type="EnsemblBacteria" id="ABX38237">
        <property type="protein sequence ID" value="ABX38237"/>
        <property type="gene ID" value="Daci_5608"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_5608"/>
    <dbReference type="eggNOG" id="COG1051">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="eggNOG" id="COG1056">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_068406_0_0_4"/>
    <dbReference type="OMA" id="YPPVFVT"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016740">
        <property type="term" value="F:transferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009058">
        <property type="term" value="P:biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.620">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004821">
        <property type="entry name" value="Cyt_trans-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015797">
        <property type="entry name" value="NUDIX_hydrolase-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000086">
        <property type="entry name" value="NUDIX_hydrolase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014729">
        <property type="entry name" value="Rossmann-like_a/b/a_fold"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01467">
        <property type="entry name" value="CTP_transf_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00293">
        <property type="entry name" value="NUDIX"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55811">
        <property type="entry name" value="SSF55811"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00125">
        <property type="entry name" value="cyt_tran_rel"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51462">
        <property type="entry name" value="NUDIX"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Nudix hydrolase" evidence="1">
        <location>
            <begin position="216"/>
            <end position="361"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS51462"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX38237.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="378" mass="42053" checksum="BA7ECD79D04ACAD4" modified="2008-01-15" version="1">MQETAAMDAPTETPATSERVHTAVLIGRFQPLHNGHMALLRAALERAEQIVVVLGSAWQAPNPKNPFSWQERAQMLREALPPADAARLHCVPVRDYYNEPLWVQAVQQAVQSCVPEGASVALVGHFKDATSGYLARFPRWQLISLPRLGQFDATPLRDIYFGESGVDFEALAAQVPPATLQFLRQWATTPVHAQMCEEWRMLARYRQAWAAAPYPPVFVTVDALLRCRVPHEGAQQDHILLIRRGHAPGLGLWALPGGFLEPRDTLWQSCLRELREETCSTLSEADLQAALQSVQVFDHPDRSLRGRTITHVHYLDLGVLPSLPPVQGGDDAALARWVAVCDLPAMESAFFEDHFQILRQFLPLPVQQPLADTGAKIG</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="84" xmlns="http://uniprot.org/uniprot">
    <accession>A9BXH4</accession>
    <name>A9BXH4_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="3">(2Fe-2S)-binding domain protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Daci_5621</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="4" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX38250.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012207419.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_5621"/>
    <dbReference type="PRIDE" id="A9BXH4"/>
    <dbReference type="EnsemblBacteria" id="ABX38250">
        <property type="protein sequence ID" value="ABX38250"/>
        <property type="gene ID" value="Daci_5621"/>
    </dbReference>
    <dbReference type="GeneID" id="60689989"/>
    <dbReference type="KEGG" id="dac:Daci_5621"/>
    <dbReference type="eggNOG" id="COG2080">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_052511_3_0_4"/>
    <dbReference type="OMA" id="YPRIHKA"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051537">
        <property type="term" value="F:2 iron, 2 sulfur cluster binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016491">
        <property type="term" value="F:oxidoreductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd00207">
        <property type="entry name" value="fer2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.10.20.30">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002888">
        <property type="entry name" value="2Fe-2S-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036884">
        <property type="entry name" value="2Fe-2S-bd_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036010">
        <property type="entry name" value="2Fe-2S_ferredoxin-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001041">
        <property type="entry name" value="2Fe-2S_ferredoxin-type"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006058">
        <property type="entry name" value="2Fe2S_fd_BS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012675">
        <property type="entry name" value="Beta-grasp_dom_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00111">
        <property type="entry name" value="Fer2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01799">
        <property type="entry name" value="Fer2_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47741">
        <property type="entry name" value="SSF47741"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54292">
        <property type="entry name" value="SSF54292"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00197">
        <property type="entry name" value="2FE2S_FER_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51085">
        <property type="entry name" value="2FE2S_FER_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="2Fe-2S ferredoxin-type" evidence="2">
        <location>
            <begin position="1"/>
            <end position="76"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023002"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS51085"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ABX38250.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="157" mass="16404" checksum="7F00BC9ABE6A65C4" modified="2008-01-15" version="1">MTDLTINGKTVSMDLDPETPILWALRDTLEMTGTKFGCGAALCGACTVHMNGQAIRSCVTPISAAAGQKITTIEAMTSGSDRVGTAVRDAWVRHDVAQCGYCQSGQIMSATAFLKSLPKGKKPSGEEIDAAMAGNICRCGTYARIRTAVADAARTLG</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="62" xmlns="http://uniprot.org/uniprot">
    <accession>A9BXM3</accession>
    <name>A9BXM3_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Extracellular solute-binding protein family 5</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Daci_5671</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="4" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX38299.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012207468.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_5671"/>
    <dbReference type="PRIDE" id="A9BXM3"/>
    <dbReference type="EnsemblBacteria" id="ABX38299">
        <property type="protein sequence ID" value="ABX38299"/>
        <property type="gene ID" value="Daci_5671"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_5671"/>
    <dbReference type="eggNOG" id="COG0747">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_017028_7_3_4"/>
    <dbReference type="OMA" id="IWKPLQN"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043190">
        <property type="term" value="C:ATP-binding cassette (ABC) transporter complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030288">
        <property type="term" value="C:outer membrane-bounded periplasmic space"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="GO" id="GO:0055085">
        <property type="term" value="P:transmembrane transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR030678">
        <property type="entry name" value="Peptide/Ni-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR039424">
        <property type="entry name" value="SBP_5"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000914">
        <property type="entry name" value="SBP_5_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006311">
        <property type="entry name" value="TAT_signal"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30290">
        <property type="entry name" value="PTHR30290"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00496">
        <property type="entry name" value="SBP_bac_5"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF002741">
        <property type="entry name" value="MppA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51318">
        <property type="entry name" value="TAT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="1">
        <location>
            <begin position="1"/>
            <end position="30"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5002736137" evidence="1">
        <location>
            <begin position="31"/>
            <end position="531"/>
        </location>
    </feature>
    <feature type="domain" description="SBP_bac_5" evidence="2">
        <location>
            <begin position="79"/>
            <end position="445"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF00496"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ABX38299.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="531" mass="58139" checksum="871BD40E0EFA6F10" modified="2008-01-15" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-01-19" version="92" xmlns="http://uniprot.org/uniprot">
    <accession>A9BXY1</accession>
    <name>A9BXY1_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="9">Apolipoprotein N-acyltransferase</fullName>
            <shortName evidence="9">ALP N-acyltransferase</shortName>
            <ecNumber evidence="9">2.3.1.269</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="9" type="primary">lnt</name>
        <name evidence="11" type="ordered locus">Daci_1272</name>
    </gene>
    <organism evidence="11 12">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="11 12" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="12">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="12" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="12">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="9">Catalyzes the phospholipid dependent N-acylation of the N-terminal cysteine of apolipoprotein, the last step in lipoprotein maturation.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="9">
            <text>a glycerophospholipid + N-terminal S-1,2-diacyl-sn-glyceryl-L-cysteinyl-[lipoprotein] = a 2-acyl-sn-glycero-3-phospholipid + H(+) + N-acyl-S-1,2-diacyl-sn-glyceryl-L-cysteinyl-[lipoprotein]</text>
            <dbReference type="Rhea" id="RHEA:48228"/>
            <dbReference type="Rhea" id="RHEA-COMP:14681"/>
            <dbReference type="Rhea" id="RHEA-COMP:14684"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:136912"/>
            <dbReference type="ChEBI" id="CHEBI:140656"/>
            <dbReference type="ChEBI" id="CHEBI:140657"/>
            <dbReference type="ChEBI" id="CHEBI:140660"/>
            <dbReference type="EC" id="2.3.1.269"/>
        </reaction>
    </comment>
    <comment type="pathway">
        <text evidence="9">Protein modification; lipoprotein biosynthesis (N-acyl transfer).</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="9">Cell inner membrane</location>
            <topology evidence="9">Multi-pass membrane protein</topology>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2 9">Belongs to the CN hydrolase family. Apolipoprotein N-acyltransferase subfamily.</text>
    </comment>
    <dbReference type="EC" id="2.3.1.269" evidence="9"/>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX33916.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012203202.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_1272"/>
    <dbReference type="EnsemblBacteria" id="ABX33916">
        <property type="protein sequence ID" value="ABX33916"/>
        <property type="gene ID" value="Daci_1272"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_1272"/>
    <dbReference type="eggNOG" id="COG0815">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_019563_3_0_4"/>
    <dbReference type="OMA" id="IPQSMKW"/>
    <dbReference type="UniPathway" id="UPA00666"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016410">
        <property type="term" value="F:N-acyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0042158">
        <property type="term" value="P:lipoprotein biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd07571">
        <property type="entry name" value="ALP_N-acyl_transferase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.60.110.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01148">
        <property type="entry name" value="Lnt"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004563">
        <property type="entry name" value="Apolipo_AcylTrfase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003010">
        <property type="entry name" value="C-N_Hydrolase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036526">
        <property type="entry name" value="C-N_Hydrolase_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045378">
        <property type="entry name" value="LNT_N"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00795">
        <property type="entry name" value="CN_hydrolase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF20154">
        <property type="entry name" value="LNT_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56317">
        <property type="entry name" value="SSF56317"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00546">
        <property type="entry name" value="lnt"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50263">
        <property type="entry name" value="CN_HYDROLASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="8 9 11" id="KW-0012">Acyltransferase</keyword>
    <keyword evidence="9" id="KW-0997">Cell inner membrane</keyword>
    <keyword evidence="3 9" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="11" id="KW-0449">Lipoprotein</keyword>
    <keyword evidence="7 9" id="KW-0472">Membrane</keyword>
    <keyword evidence="12" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4 9 11" id="KW-0808">Transferase</keyword>
    <keyword evidence="5 9" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="6 9" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="9">
        <location>
            <begin position="59"/>
            <end position="75"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="9">
        <location>
            <begin position="87"/>
            <end position="110"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="9">
        <location>
            <begin position="116"/>
            <end position="139"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="9">
        <location>
            <begin position="151"/>
            <end position="172"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="9">
        <location>
            <begin position="192"/>
            <end position="213"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="9">
        <location>
            <begin position="225"/>
            <end position="244"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="9">
        <location>
            <begin position="518"/>
            <end position="540"/>
        </location>
    </feature>
    <feature type="domain" description="CN hydrolase" evidence="10">
        <location>
            <begin position="264"/>
            <end position="508"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00010065"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00023315"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01148"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="10">
        <source>
            <dbReference type="PROSITE" id="PS50263"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="EMBL" id="ABX33916.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="550" mass="59337" checksum="672FD92EEA4BC34B" modified="2008-01-15" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="57" xmlns="http://uniprot.org/uniprot">
    <accession>A9BXZ4</accession>
    <name>A9BXZ4_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">FAD dependent oxidoreductase TIGR03364</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_1285</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX33929.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012203215.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_1285"/>
    <dbReference type="PRIDE" id="A9BXZ4"/>
    <dbReference type="EnsemblBacteria" id="ABX33929">
        <property type="protein sequence ID" value="ABX33929"/>
        <property type="gene ID" value="Daci_1285"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_1285"/>
    <dbReference type="eggNOG" id="COG0665">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_060691_2_1_4"/>
    <dbReference type="OMA" id="RVRLQMM"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016491">
        <property type="term" value="F:oxidoreductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.50.50.60">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006076">
        <property type="entry name" value="FAD-dep_OxRdtase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017741">
        <property type="entry name" value="FAD-dependent_OxRdtase_HpnW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036188">
        <property type="entry name" value="FAD/NAD-bd_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01266">
        <property type="entry name" value="DAO"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR03364">
        <property type="entry name" value="HpnW_proposed"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="DAO" evidence="1">
        <location>
            <begin position="5"/>
            <end position="366"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF01266"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX33929.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="371" mass="40281" checksum="F1F37D4D4A518D65" modified="2008-01-15" version="1">MKNYDLIVVGAGIVGLAHAYAAARRGRSVLVIERDAACISASIRNFGFVTITGQQAGAHWRRAMRSRDTWAEIAPQAGIEVVHRGLWLTARRPSAEAVLHAFLSTAMGERCELLTPAQAAERHPALHTEDLSAVLYSPHELRVESRTAIPRLAQWLEQAMGVDFRFGEAVLDVAAPRVRSTRASYHGERVVVCNNADPGGLFAGLWAPHRIQLCQLQMLRVRPQPGFRLKGSVMGDLSMVRYEGYSALPEAAALRAELEREEGESLAHGIHLIAVQSADGSLVVGDSHHYGAAPQPFASEAVDRLMLRHMNEALNLRDAQVVERWVGVYPSAQDAPCVVHAPDEATRVVAVTGGSGASTAFGLAEEVWSAW</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="77" xmlns="http://uniprot.org/uniprot">
    <accession>A9BY33</accession>
    <name>A9BY33_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Transcriptional regulator, TetR family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ordered locus">Daci_1324</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="5" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX33968.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012203254.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_1324"/>
    <dbReference type="PRIDE" id="A9BY33"/>
    <dbReference type="EnsemblBacteria" id="ABX33968">
        <property type="protein sequence ID" value="ABX33968"/>
        <property type="gene ID" value="Daci_1324"/>
    </dbReference>
    <dbReference type="GeneID" id="60685885"/>
    <dbReference type="KEGG" id="dac:Daci_1324"/>
    <dbReference type="eggNOG" id="COG1309">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_069356_5_0_4"/>
    <dbReference type="OMA" id="IEQTVFG"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009057">
        <property type="entry name" value="Homeobox-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001647">
        <property type="entry name" value="HTH_TetR"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036271">
        <property type="entry name" value="Tet_transcr_reg_TetR-rel_C_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00440">
        <property type="entry name" value="TetR_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00455">
        <property type="entry name" value="HTHTETR"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46689">
        <property type="entry name" value="SSF46689"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48498">
        <property type="entry name" value="SSF48498"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50977">
        <property type="entry name" value="HTH_TETR_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HTH tetR-type" evidence="3">
        <location>
            <begin position="38"/>
            <end position="98"/>
        </location>
    </feature>
    <feature type="DNA-binding region" description="H-T-H motif" evidence="1">
        <location>
            <begin position="61"/>
            <end position="80"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="1"/>
            <end position="39"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00335"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="PROSITE" id="PS50977"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="ABX33968.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="231" mass="25081" checksum="D1A25CE3AF2E8E44" modified="2008-01-15" version="1">MSESEVLSPLSAPGADVVSDEAASASAPTPARKRPKPGERREQILQALAAMLEKPGAERITTAALAAHLGVSEAALYRHFASKAQMFEGLIEFIEQSVFTLVQQIVGRDVPEEERPAVDGMRQASRVISLVLQFGERNPGMVRVMVGDAIVFEHERLQARMNQFFDRIESTLRQCLRPAAGALGSSAPTVDAQVAASVLTSFALGRLQRYARSGFRRLPTEHLEASLALMV</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="43" xmlns="http://uniprot.org/uniprot">
    <accession>A9BY41</accession>
    <name>A9BY41_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Daci_1332</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="2" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX33976.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012203262.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_1332"/>
    <dbReference type="PRIDE" id="A9BY41"/>
    <dbReference type="EnsemblBacteria" id="ABX33976">
        <property type="protein sequence ID" value="ABX33976"/>
        <property type="gene ID" value="Daci_1332"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_1332"/>
    <dbReference type="eggNOG" id="COG3979">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_068431_0_0_4"/>
    <dbReference type="OMA" id="MNDEFTR"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ABX33976.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="311" mass="34579" checksum="CFC473C878BBF227" modified="2008-01-15" version="1">MNDEFTRGMGFVPPLPITLDNMSTNVAASGLQPWSASKAYALNDEIIDTSRVIWRSMVGSNTGNDPASSEGKWQRRGVENRLRMFDASLGSYTEADDLIEVTIKPGRVVTDIELLGLQAHTVEVVMTDPVAGEVFHSGQRLVLRPSGNSHWGYFFNPIERERKLSISGLPAYTQASITIRIANLGAKARCAEVVIGRAVWLGNTQWRPSVSFDDWSLKKRDDWGGWMAEPGAYSDRLKLQVLVHGTQYERVRNEILAYRARPVVWIGARGYGVLTTYGYITGFDQVLVAHGFSDCNLTIEGLEDDELHTPT</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="46" xmlns="http://uniprot.org/uniprot">
    <accession>A9BYC9</accession>
    <name>A9BYC9_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Primase 2</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Daci_1624</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="4" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX34268.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012203553.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_1624"/>
    <dbReference type="PRIDE" id="A9BYC9"/>
    <dbReference type="EnsemblBacteria" id="ABX34268">
        <property type="protein sequence ID" value="ABX34268"/>
        <property type="gene ID" value="Daci_1624"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_1624"/>
    <dbReference type="eggNOG" id="COG4643">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_899329_0_0_4"/>
    <dbReference type="OMA" id="WIMAGMA"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016817">
        <property type="term" value="F:hydrolase activity, acting on acid anhydrides"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014819">
        <property type="entry name" value="PriCT_2"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08707">
        <property type="entry name" value="PriCT_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="PriCT_2" evidence="2">
        <location>
            <begin position="5"/>
            <end position="75"/>
        </location>
    </feature>
    <feature type="coiled-coil region" evidence="1">
        <location>
            <begin position="95"/>
            <end position="122"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF08707"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ABX34268.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="309" mass="34663" checksum="8439C2FB44F5F0E3" modified="2008-01-15" version="1">MTDRIRNALQYLNHDDREVWIMAGMAIKAEIGESGFDLWDEWSRRADSYNPKAARASWRSFRGSGVTVGSLFHEATAAGWTPRDDVAFQPLTEAQLQAQQKARDARLAAEQAQRRQDQEKAARKAGWILHQCKHEQHAYLHSKGWPEATGSVWWAAEDSNLLCIPMRVGSTLVGIQMIDRRGEKKYLRGQRTSGASYCIDNSGPGALDWWVEGYATGLSLRDCLQALRMRYRIHICFSAGNLKRMANRGMVVADNDASGTGEAAAKATGLPYFLPPQGDFNDMHRKDGAFRASQALRRWLSQARTEASM</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="52" xmlns="http://uniprot.org/uniprot">
    <accession>A9BYS9</accession>
    <name>A9BYS9_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="7">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ordered locus">Daci_2184</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="8" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the autoinducer-2 exporter (AI-2E) (TC 2.A.86) family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX34824.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012204107.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_2184"/>
    <dbReference type="PRIDE" id="A9BYS9"/>
    <dbReference type="EnsemblBacteria" id="ABX34824">
        <property type="protein sequence ID" value="ABX34824"/>
        <property type="gene ID" value="Daci_2184"/>
    </dbReference>
    <dbReference type="GeneID" id="60686579"/>
    <dbReference type="KEGG" id="dac:Daci_2184"/>
    <dbReference type="eggNOG" id="COG0628">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_798794_0_0_4"/>
    <dbReference type="OMA" id="HEAENPG"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002549">
        <property type="entry name" value="AI-2E-like"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01594">
        <property type="entry name" value="AI-2E_transport"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5 6" id="KW-0472">Membrane</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 6" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="4 6" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="25"/>
            <end position="58"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="79"/>
            <end position="97"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="169"/>
            <end position="188"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="209"/>
            <end position="233"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="245"/>
            <end position="266"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="273"/>
            <end position="293"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="313"/>
            <end position="342"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00009773"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="ABX34824.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="352" mass="37867" checksum="F8156A9F14051363" modified="2008-01-15" version="1">MTQHLPSPIISPQPAPTRGVTLSSYVLMAGALLLIMWQGLLPGMLCVCVGFLVTRALAGLLARAQPKARRGSLPRWTQLVAATIVILAPLALLSGALSHTRTYITDAPQQYRELLDYLAHTVLELRDKLPADMADQLPDGAQEIQHLLASYLAAKAGALAHAGRAWLTGLLYAYVGLIIGALAAVRPITTRRPPLVAALRERIRLMGLAFRQIVAAQFWIAAFNTFLTAIFLLGVLPHWNLTLPYTPALITLTFIAGLVPIVGNLLCNAVITIVGLSVSPVAAAACLGFLILIHKAEYVINAKVVGQRTHMGVWELLAVMFVAESVFGPAGLVAAPLFYAYLKKELEAVRLV</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="51" xmlns="http://uniprot.org/uniprot">
    <accession>A9BZ57</accession>
    <name>A9BZ57_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Daci_2519</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="4" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX35157.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012204438.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_2519"/>
    <dbReference type="PRIDE" id="A9BZ57"/>
    <dbReference type="EnsemblBacteria" id="ABX35157">
        <property type="protein sequence ID" value="ABX35157"/>
        <property type="gene ID" value="Daci_2519"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_2519"/>
    <dbReference type="eggNOG" id="ENOG5030F52">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_110735_0_1_4"/>
    <dbReference type="OMA" id="RAQTIVG"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009936">
        <property type="entry name" value="DUF1468"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07331">
        <property type="entry name" value="TctB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="2" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="31"/>
            <end position="51"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="63"/>
            <end position="81"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="102"/>
            <end position="135"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="158"/>
            <end position="180"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="21"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ABX35157.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="189" mass="19355" checksum="3773AF3F4DBB43A5" modified="2008-01-15" version="1">MSESSQPNPLATDAAQADEPSGFPSVRAQTIVGSGVLLVAAGLAFGALQIPSDSGYGGVGPNFLPWLCAVVLAVCGAWLVWEARTGGYREASAPGGHPRADIGAFVWVSTGLLVNAALIGTVGFIVSCTVCYVLAVQGLRRAGGQAQAGAPITWVKDVVTGLLISAPVFWAFTQFLAINLPGLTETGWL</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="78" xmlns="http://uniprot.org/uniprot">
    <accession>A9BZB1</accession>
    <name>A9BZB1_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Transcriptional regulator, LysR family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Daci_2873</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="4" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the LysR transcriptional regulatory family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX35511.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012204721.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_2873"/>
    <dbReference type="PRIDE" id="A9BZB1"/>
    <dbReference type="EnsemblBacteria" id="ABX35511">
        <property type="protein sequence ID" value="ABX35511"/>
        <property type="gene ID" value="Daci_2873"/>
    </dbReference>
    <dbReference type="GeneID" id="60687149"/>
    <dbReference type="KEGG" id="dac:Daci_2873"/>
    <dbReference type="eggNOG" id="COG0583">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_039613_6_0_4"/>
    <dbReference type="OMA" id="QRFMAAH"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003700">
        <property type="term" value="F:DNA-binding transcription factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005119">
        <property type="entry name" value="LysR_subst-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000847">
        <property type="entry name" value="Tscrpt_reg_HTH_LysR"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036390">
        <property type="entry name" value="WH_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00126">
        <property type="entry name" value="HTH_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03466">
        <property type="entry name" value="LysR_substrate"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46785">
        <property type="entry name" value="SSF46785"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50931">
        <property type="entry name" value="HTH_LYSR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HTH lysR-type" evidence="2">
        <location>
            <begin position="1"/>
            <end position="60"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00009437"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS50931"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ABX35511.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="294" mass="32358" checksum="9716FE43C9F4791C" modified="2008-01-15" version="1">MKLDPISLRLFVAVMEESAIARAAAREHIAPSAASRRLAELESQLQVELFTRSNRGSVPTAAAYALLNMARGVLNDLDGIGEQMREYGSGLRGHVRVMANISAITQFLPSQLQRFLDQHPHVDVRLQERVSSDIARAVADNEADIGILNQGSYGEKIRLRPYRRDRLIVIVPQGHALVRRRSLRLAQVLDHDLVGMHAGSALNHQITRAAADLGLQPRLRMKVTGYDALCLMVASGLGVGILPEGSARLYLGALPLRCIALDEPWAERQLMLCVRSQEALPPVAQLLVEHLCEP</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="62" xmlns="http://uniprot.org/uniprot">
    <accession>A9BZJ9</accession>
    <name>A9BZJ9_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="1">4-oxalocrotonate tautomerase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Daci_2961</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="2" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX35599.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012204809.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="PRIDE" id="A9BZJ9"/>
    <dbReference type="EnsemblBacteria" id="ABX35599">
        <property type="protein sequence ID" value="ABX35599"/>
        <property type="gene ID" value="Daci_2961"/>
    </dbReference>
    <dbReference type="GeneID" id="60687262"/>
    <dbReference type="KEGG" id="dac:Daci_2961"/>
    <dbReference type="eggNOG" id="COG1942">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_148073_0_0_4"/>
    <dbReference type="OMA" id="QIVHQHP"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.429.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037479">
        <property type="entry name" value="Tauto_MSAD"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014347">
        <property type="entry name" value="Tautomerase/MIF_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR38460">
        <property type="entry name" value="PTHR38460"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF14552">
        <property type="entry name" value="Tautomerase_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55331">
        <property type="entry name" value="SSF55331"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ABX35599.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="134" mass="14683" checksum="88BE030C076A657A" modified="2008-01-15" version="1">MPFVHTYLPQSTSTSQRDAVVQGIHQALVQGIGMPEDELFNMVHPYAPGQFAFSRSFNGVARSDAVVVVEITMRRGRSDAMKKALYAAIARNLHEGAGVAPADVFIFMHENDYSDWSVGHGRFAMALVQQTGAQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="55" xmlns="http://uniprot.org/uniprot">
    <accession>A9BZS1</accession>
    <name>A9BZS1_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ordered locus">Daci_3341</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="5" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Periplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the UPF0065 (bug) family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX35979.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012205179.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_3341"/>
    <dbReference type="PRIDE" id="A9BZS1"/>
    <dbReference type="EnsemblBacteria" id="ABX35979">
        <property type="protein sequence ID" value="ABX35979"/>
        <property type="gene ID" value="Daci_3341"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_3341"/>
    <dbReference type="eggNOG" id="COG3181">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_045683_0_1_4"/>
    <dbReference type="OMA" id="GYEFYSW"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0042597">
        <property type="term" value="C:periplasmic space"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.190.150">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005064">
        <property type="entry name" value="BUG"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR042100">
        <property type="entry name" value="Bug_dom1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006311">
        <property type="entry name" value="TAT_signal"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR42928">
        <property type="entry name" value="PTHR42928"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03401">
        <property type="entry name" value="TctC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF017082">
        <property type="entry name" value="YflP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51318">
        <property type="entry name" value="TAT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="3">
        <location>
            <begin position="1"/>
            <end position="28"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5002733198" evidence="3">
        <location>
            <begin position="29"/>
            <end position="325"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004418"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00006987"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="ABX35979.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="325" mass="34409" checksum="019D6DAB3E74AC52" modified="2008-01-15" version="1">MQRHHFLRAALGAAAGAALLALAGPAGAQAWPAKPVRVVIPFPPGGTLDAVGRQLAQKLGEQTGQQFIIDNRPGGNGVIGGDIVAKAPADGYTLLFNASTFTTAPMTMKTVPYQVNRDFAPVALVAKAPLSVAINKNLPITDIKSLMAYAKSHPGKMTFAVGSIGSAGHLSTELLKRAGQLDYLIVPYKGTAPAFQDLIGGQIDGFIDPILGSLQYHKGGMLRVVAVTSAQRAPSLPDVPTVGETIAGYEFYSWYGLWAPAKVPADIIKRLNTEVNKALAGDLKDKLREQGLLLSPGSVEDFARFQASDMERAQKIVTEGNIRVE</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="56" xmlns="http://uniprot.org/uniprot">
    <accession>A9BZV0</accession>
    <name>A9BZV0_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Daci_3370</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="2" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX36008.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012205208.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_3370"/>
    <dbReference type="PRIDE" id="A9BZV0"/>
    <dbReference type="EnsemblBacteria" id="ABX36008">
        <property type="protein sequence ID" value="ABX36008"/>
        <property type="gene ID" value="Daci_3370"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_3370"/>
    <dbReference type="eggNOG" id="COG2329">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_127039_1_0_4"/>
    <dbReference type="OMA" id="ITVSYWE"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011008">
        <property type="entry name" value="Dimeric_a/b-barrel"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54909">
        <property type="entry name" value="SSF54909"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ABX36008.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="109" mass="12398" checksum="4A54FF519D5494BE" modified="2008-01-15" version="1">MSPFANTPEPPYYAVIFSSRRTPDDDDGYGLMAQRMVDLASQQQGFLGAESTRGEDGFGITVSYWSTAESIARWKQDAEHLVAQQLGKDAWYEHYELRVARVERAYGKR</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="37" xmlns="http://uniprot.org/uniprot">
    <accession>A9C002</accession>
    <name>A9C002_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Daci_3632</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="2" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX36264.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_3632"/>
    <dbReference type="PRIDE" id="A9C002"/>
    <dbReference type="EnsemblBacteria" id="ABX36264">
        <property type="protein sequence ID" value="ABX36264"/>
        <property type="gene ID" value="Daci_3632"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_3632"/>
    <dbReference type="eggNOG" id="COG0456">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_1136590_0_0_4"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ABX36264.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="244" mass="26643" checksum="C1494558B5B91819" modified="2008-01-15" version="1">MNLARDLQGAMLQLSTTPLAGKQAEVFRNIRRNTRSIYKDLRRERREESAGTSEWAKLWEQLQLDGGTTGYRDLHADPKDRAKALHRALDQVGEGKVVGNGRALLAWLPGFHETLEATTRLGVYKAALDQGISRQEASSIAKNITVNFNRKGRNMPVAGTHFAFLNAAIQGNKRMLETLAGPAGRKVMMGGALGMVSAMAGYLMMAEAKGRVERGEDADAVLLDVPLAQLRGSAGLVDEQISDW</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="78" xmlns="http://uniprot.org/uniprot">
    <accession>A9C046</accession>
    <name>A9C046_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Transcriptional regulator, LysR family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Daci_3676</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="4" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the LysR transcriptional regulatory family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX36308.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012205504.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_3676"/>
    <dbReference type="PRIDE" id="A9C046"/>
    <dbReference type="EnsemblBacteria" id="ABX36308">
        <property type="protein sequence ID" value="ABX36308"/>
        <property type="gene ID" value="Daci_3676"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_3676"/>
    <dbReference type="eggNOG" id="COG0583">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_039613_6_4_4"/>
    <dbReference type="OMA" id="IWKRGRS"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003700">
        <property type="term" value="F:DNA-binding transcription factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005119">
        <property type="entry name" value="LysR_subst-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000847">
        <property type="entry name" value="Tscrpt_reg_HTH_LysR"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036390">
        <property type="entry name" value="WH_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00126">
        <property type="entry name" value="HTH_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03466">
        <property type="entry name" value="LysR_substrate"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00039">
        <property type="entry name" value="HTHLYSR"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46785">
        <property type="entry name" value="SSF46785"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50931">
        <property type="entry name" value="HTH_LYSR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HTH lysR-type" evidence="2">
        <location>
            <begin position="16"/>
            <end position="73"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00009437"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS50931"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ABX36308.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="317" mass="34541" checksum="4CC72ABD6511BBE9" modified="2008-01-15" version="1">MVQDAISLAPHPPPLMKTHLLRYFVALAEERHFGRAAQRLCITQPPLSMALKTLEQDLGASLMDRDAKNVRLTPAGEAFLVEARKVLAQLQHAADVVRGVAEGMQGRLDVGITGSMVYRQVPDFCRAFRAERPLVEVCLHEMSTREQLQAIASGQIDCGFLNIASPPDGLQTLSIGEEPFVCCLPATHALAQQPDIDLRELARDTFVMFAREVAPANYDNVIACLQQAGIHPHTRHAARQWLTVMALVSAEQGVALVPSCMQRVGMNGVVFVPLRGPQQAMTPAVMAWRADQPAALLQAFIERVRAMASTAVKGGRG</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="54" xmlns="http://uniprot.org/uniprot">
    <accession>A9C095</accession>
    <name>A9C095_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Activator of Hsp90 ATPase 1 family protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_4030</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the AHA1 family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX36661.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012205855.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_4030"/>
    <dbReference type="PRIDE" id="A9C095"/>
    <dbReference type="EnsemblBacteria" id="ABX36661">
        <property type="protein sequence ID" value="ABX36661"/>
        <property type="gene ID" value="Daci_4030"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_4030"/>
    <dbReference type="eggNOG" id="COG3832">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_108923_6_1_4"/>
    <dbReference type="OMA" id="ERWWGPP"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.530.20">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013538">
        <property type="entry name" value="Activator_of_Hsp90_ATPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023393">
        <property type="entry name" value="START-like_dom_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08327">
        <property type="entry name" value="AHSA1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00006817"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX36661.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="158" mass="17903" checksum="BD2AEA1C1A36E778" modified="2008-01-15" version="1">MTAQDIPDHANDLVLTRLLDIPADRLYRCWTEPALIQQWFAPSPWSVSRVDNDVRPGGHSLIVMRSPEGQEMPGRGVYLEVIPNRRLVFTDAFTQGWVPADKPFMTGIVSFDPEGSQTRYTARVRHWSAADRAQHEAMGFHTGWDQCTDQLAELAARL</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="54" xmlns="http://uniprot.org/uniprot">
    <accession>A9C096</accession>
    <name>A9C096_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Daci_4031</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="2" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX36662.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012205856.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_4031"/>
    <dbReference type="PRIDE" id="A9C096"/>
    <dbReference type="EnsemblBacteria" id="ABX36662">
        <property type="protein sequence ID" value="ABX36662"/>
        <property type="gene ID" value="Daci_4031"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_4031"/>
    <dbReference type="eggNOG" id="COG5507">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_136844_0_0_4"/>
    <dbReference type="OMA" id="YVECIGD"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011008">
        <property type="entry name" value="Dimeric_a/b-barrel"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009874">
        <property type="entry name" value="DUF1428"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07237">
        <property type="entry name" value="DUF1428"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF007028">
        <property type="entry name" value="UCP007028"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54909">
        <property type="entry name" value="SSF54909"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ABX36662.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="133" mass="14527" checksum="2B18758223EEAE13" modified="2008-01-15" version="1">MHYIDGFVLPVPRANLQAYREVAQAAGKVWMEYGALQYWECAGDDVPMGKLTSFPQAVQLKEGEVVFFSWIIYASRAERDRINAAVMKDPRIASMDPATMPFDAKRMFWGGFESVVELGTGEGASAGASGAPA</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="52" xmlns="http://uniprot.org/uniprot">
    <accession>A9C0A4</accession>
    <name>A9C0A4_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Transport-associated protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Daci_4039</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="4" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX36670.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012205864.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_4039"/>
    <dbReference type="PRIDE" id="A9C0A4"/>
    <dbReference type="EnsemblBacteria" id="ABX36670">
        <property type="protein sequence ID" value="ABX36670"/>
        <property type="gene ID" value="Daci_4039"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_4039"/>
    <dbReference type="eggNOG" id="COG2823">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_121933_1_0_4"/>
    <dbReference type="OMA" id="CHILAVS"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007055">
        <property type="entry name" value="BON_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014004">
        <property type="entry name" value="Transpt-assoc_nodulatn_dom_bac"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04972">
        <property type="entry name" value="BON"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00749">
        <property type="entry name" value="BON"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50914">
        <property type="entry name" value="BON"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="1">
        <location>
            <begin position="1"/>
            <end position="18"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5002732736" evidence="1">
        <location>
            <begin position="19"/>
            <end position="156"/>
        </location>
    </feature>
    <feature type="domain" description="BON" evidence="2">
        <location>
            <begin position="87"/>
            <end position="155"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS50914"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ABX36670.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="156" mass="15872" checksum="A1343A73B2FC5B31" modified="2008-01-15" version="1">MTFITQRCCHILAVSALAFGLAACGKTEDTAGQKLDSAVQQSQQAAQSAGQKIDNAMSSAGTKIEEGAMKAESATTNAMSQAGAALDDAGITAQIKADLIKEPDISALKIDVDTKAGAVTLTGSVPSDALKMRAGEIAKSVKGVNNVSNMLEIKAS</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="56" xmlns="http://uniprot.org/uniprot">
    <accession>A9C0G3</accession>
    <name>A9C0G3_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Phage-associated protein, HI1409 family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_4098</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX36729.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012205921.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_4098"/>
    <dbReference type="PRIDE" id="A9C0G3"/>
    <dbReference type="EnsemblBacteria" id="ABX36729">
        <property type="protein sequence ID" value="ABX36729"/>
        <property type="gene ID" value="Daci_4098"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_4098"/>
    <dbReference type="eggNOG" id="COG3567">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_027488_2_1_4"/>
    <dbReference type="OMA" id="AMYRSSW"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR024459">
        <property type="entry name" value="DUF1073"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006445">
        <property type="entry name" value="Phage-assoc_HI1409"/>
    </dbReference>
    <dbReference type="Pfam" id="PF06381">
        <property type="entry name" value="DUF1073"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01555">
        <property type="entry name" value="phge_rel_HI1409"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="427"/>
            <end position="452"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX36729.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="452" mass="49360" checksum="227E4960C439C08B" modified="2008-01-15" version="1">MGIIKNFADGLVNIVANLGTGRDKAAHNQYVDTLLAGPALLAAYRNSWLARAIIDYPAEDSTRKWRQWRAESEQITKIERLEKALHLKRRVQDAVTAARLYGGSAIYLNTKTAKQELPLQVGKEEIRSLVVLTRNNLTPDQVVRDIDNPYYGRPEFYTLATGDNAGQVRIHASRLVIFQGATVPSDPSTAIVQQGWGDSVLQSTMDAVQQMDGTMANMASLVFEAKVDVLKFKGFADLLADEGNDAQVTRRLSTQAAMKGINGALVIDAEDDYEQKSANFAGLPDVVAKFMDAVAGASRIPVTRLYGRAAVGLSGSGDGDERVYFDRIGHIQATEIQPAMELLDECLIWQALGARPEEIYFEWRPLRQLTETERADIFSKTASAARALAGNNEGALIPMDALSDSLVNEFTEQGMLPGLEQAIEKYGSLGEQGLPAESGQEEPLPSTGEEQP</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="55" xmlns="http://uniprot.org/uniprot">
    <accession>A9C0L1</accession>
    <name>A9C0L1_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Amidohydrolase 2</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_4454</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX37084.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_4454"/>
    <dbReference type="PRIDE" id="A9C0L1"/>
    <dbReference type="EnsemblBacteria" id="ABX37084">
        <property type="protein sequence ID" value="ABX37084"/>
        <property type="gene ID" value="Daci_4454"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_4454"/>
    <dbReference type="eggNOG" id="COG3618">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_064039_2_0_4"/>
    <dbReference type="OMA" id="NSIGCDH"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016787">
        <property type="term" value="F:hydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006680">
        <property type="entry name" value="Amidohydro-rel"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR032466">
        <property type="entry name" value="Metal_Hydrolase"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04909">
        <property type="entry name" value="Amidohydro_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51556">
        <property type="entry name" value="SSF51556"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Amidohydro-rel" evidence="1">
        <location>
            <begin position="30"/>
            <end position="293"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF04909"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX37084.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="304" mass="33111" checksum="8C49F91A8D88ED18" modified="2008-01-15" version="1">MPPAPRLAWRNPQGVLPVSAVPRFAIASSVDTHAHVFERGLPMPDARRYAPDEDALLGTYLHHLDTHGMAHGVLVQPSFLGTDNSYLLQALRAQPQRLRGVAVVDESTGDEQLQALADAGVVGMRLNLIGLPLPDLNAPGWRRVLEQANTLGWHVELHLQAGRLPDLLPALLAAGCRVVVDHFGRPDPALGVRDPGFGYLLQQAGSGRVWVKLSAPYRIWQAADCAASGRQATAQLLQAFTAGRLLWGSDWPHTQHAGQASYPAAVRWLQDWLDDAGPLQAVLGRTAFELFRFQNDMPNQGDTP</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="80" xmlns="http://uniprot.org/uniprot">
    <accession>A9C0Q2</accession>
    <name>A9C0Q2_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="5 9">2-dehydropantoate 2-reductase</fullName>
            <ecNumber evidence="4 9">1.1.1.169</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="8 9">Ketopantoate reductase</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="12" type="ordered locus">Daci_4496</name>
    </gene>
    <organism evidence="12 13">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="12 13" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="13">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="13" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="13">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="9">Catalyzes the NADPH-dependent reduction of ketopantoate into pantoic acid.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1 9">
            <text>(R)-pantoate + NADP(+) = 2-dehydropantoate + H(+) + NADPH</text>
            <dbReference type="Rhea" id="RHEA:16233"/>
            <dbReference type="ChEBI" id="CHEBI:11561"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:15980"/>
            <dbReference type="ChEBI" id="CHEBI:57783"/>
            <dbReference type="ChEBI" id="CHEBI:58349"/>
            <dbReference type="EC" id="1.1.1.169"/>
        </reaction>
    </comment>
    <comment type="pathway">
        <text evidence="2 9">Cofactor biosynthesis; (R)-pantothenate biosynthesis; (R)-pantoate from 3-methyl-2-oxobutanoate: step 2/2.</text>
    </comment>
    <comment type="similarity">
        <text evidence="3 9">Belongs to the ketopantoate reductase family.</text>
    </comment>
    <dbReference type="EC" id="1.1.1.169" evidence="4 9"/>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX37125.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_4496"/>
    <dbReference type="PRIDE" id="A9C0Q2"/>
    <dbReference type="EnsemblBacteria" id="ABX37125">
        <property type="protein sequence ID" value="ABX37125"/>
        <property type="gene ID" value="Daci_4496"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_4496"/>
    <dbReference type="eggNOG" id="COG1893">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_031468_4_0_4"/>
    <dbReference type="OMA" id="GMFSRGD"/>
    <dbReference type="UniPathway" id="UPA00028">
        <property type="reaction ID" value="UER00004"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008677">
        <property type="term" value="F:2-dehydropantoate 2-reductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015940">
        <property type="term" value="P:pantothenate biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniPathway"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.1040.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008927">
        <property type="entry name" value="6-PGluconate_DH-like_C_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013328">
        <property type="entry name" value="6PGD_dom2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003710">
        <property type="entry name" value="ApbA"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013752">
        <property type="entry name" value="KPA_reductase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013332">
        <property type="entry name" value="KPR_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036291">
        <property type="entry name" value="NAD(P)-bd_dom_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02558">
        <property type="entry name" value="ApbA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08546">
        <property type="entry name" value="ApbA_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48179">
        <property type="entry name" value="SSF48179"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51735">
        <property type="entry name" value="SSF51735"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00745">
        <property type="entry name" value="apbA_panE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="7" id="KW-0520">NAD</keyword>
    <keyword evidence="9" id="KW-0521">NADP</keyword>
    <keyword evidence="9 12" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="6 9" id="KW-0566">Pantothenate biosynthesis</keyword>
    <keyword evidence="13" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="ApbA" evidence="10">
        <location>
            <begin position="9"/>
            <end position="147"/>
        </location>
    </feature>
    <feature type="domain" description="ApbA_C" evidence="11">
        <location>
            <begin position="172"/>
            <end position="291"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00000784"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00004994"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00007870"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00013014"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00019465"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022655"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023027"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00032024"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="RuleBase" id="RU362068"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="10">
        <source>
            <dbReference type="Pfam" id="PF02558"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="11">
        <source>
            <dbReference type="Pfam" id="PF08546"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="EMBL" id="ABX37125.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="13">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="298" mass="31317" checksum="DC532B0E9D32E765" modified="2008-01-15" version="1">MNQPTHPRIAVLGPGAIGTTVAAALHEVGRTPLLCGRTPRDSLTLHGSGLRIVVPGPVRTDPAQVEGPVDLVFLAVKATQTAAVAHWLAALSGPQTVVCVLQNGVEQVESVTPLCPQGRIVPAVVWFPAQAQPDGSVLLRSDARISLPDEAAALVVAQALQGTRCSVDLVSNFKSLAWQKLLQNAAAGLMALTHRRSGMFGRHDISKLTLDYLRECLAVARAEGVELGDEVPQAILDKFQAFPADLGTSILADREAGRPLEWDIRNGVIARRGRARGVPTPIGDVLVPLLAAASDGPG</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="61" xmlns="http://uniprot.org/uniprot">
    <accession>A9C0R9</accession>
    <name>A9C0R9_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">YbaK/prolyl-tRNA synthetase associated region</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_5754</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX38382.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012207551.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_5754"/>
    <dbReference type="PRIDE" id="A9C0R9"/>
    <dbReference type="EnsemblBacteria" id="ABX38382">
        <property type="protein sequence ID" value="ABX38382"/>
        <property type="gene ID" value="Daci_5754"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_5754"/>
    <dbReference type="eggNOG" id="COG2606">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_094875_2_2_4"/>
    <dbReference type="OMA" id="AKAMLCT"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0002161">
        <property type="term" value="F:aminoacyl-tRNA editing activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004812">
        <property type="term" value="F:aminoacyl-tRNA ligase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd04336">
        <property type="entry name" value="YeaK"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.960.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036754">
        <property type="entry name" value="YbaK/aa-tRNA-synt-asso_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007214">
        <property type="entry name" value="YbaK/aa-tRNA-synth-assoc-dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR044786">
        <property type="entry name" value="YeaK"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04073">
        <property type="entry name" value="tRNA_edit"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55826">
        <property type="entry name" value="SSF55826"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0030">Aminoacyl-tRNA synthetase</keyword>
    <keyword evidence="2" id="KW-0436">Ligase</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="tRNA_edit" evidence="1">
        <location>
            <begin position="28"/>
            <end position="148"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF04073"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX38382.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="163" mass="17285" checksum="C66554BFF1D1072C" modified="2008-01-15" version="1">MFDTLVDLLQSQGARFRVLEHPAEGRSDLVAEIRGTAPGQGAKAMLCKSRDAAGAGDPQLFLAVLPGDRKLDFKRLAQAVGVRKATLASPEEAQAATGCVMGSVPPFSFNPQVRLVVDPALVERFGEIAFNAGRLDRSIVLDSADYVRIARPALHSLSGEGAD</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="56" xmlns="http://uniprot.org/uniprot">
    <accession>A9C0S7</accession>
    <name>A9C0S7_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="1">ADP-ribosylation/Crystallin J1</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Daci_5762</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="2" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX38390.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_5762"/>
    <dbReference type="PRIDE" id="A9C0S7"/>
    <dbReference type="EnsemblBacteria" id="ABX38390">
        <property type="protein sequence ID" value="ABX38390"/>
        <property type="gene ID" value="Daci_5762"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_5762"/>
    <dbReference type="eggNOG" id="COG1397">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_024566_8_2_4"/>
    <dbReference type="OMA" id="PGTWTDD"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.4080.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005502">
        <property type="entry name" value="Ribosyl_crysJ1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036705">
        <property type="entry name" value="Ribosyl_crysJ1_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03747">
        <property type="entry name" value="ADP_ribosyl_GH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF101478">
        <property type="entry name" value="SSF101478"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ABX38390.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="322" mass="34139" checksum="60308141583E11F7" modified="2008-01-15" version="1">MSASTGMAMDTLDRYRGALLGLACGDAVGTTLEFQPRGSFAPLTDMVGGGPFSLPAGKWTDDTSMALCLAESLLQRGGCDPQDQMTRYANWYEWGYWSSTGNCFDIGMATRAAIQRFLATGDPLAGSPDPDQAGNGSLMRLAPVPMFFGPDEDLVQRMAELSSRTTHAAPECLQACRLFAVALCRALQGLPRQQVLDLGGVLQDGASPRLREIARGDYRDKPAAQIRGSGYVVDSLEAALWCFARHDSFEGAVLQAANLGDDADTTAAITGQLAGALHGASGIADRWLERLHLAPEITALADALWQAARGARDASPTAPLSN</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="81" xmlns="http://uniprot.org/uniprot">
    <accession>A9C143</accession>
    <name>A9C143_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Transcriptional regulator, GntR family with aminotransferase domain</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Daci_5878</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="4" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">In the C-terminal section; belongs to the class-I pyridoxal-phosphate-dependent aminotransferase family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX38506.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012207675.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_5878"/>
    <dbReference type="PRIDE" id="A9C143"/>
    <dbReference type="EnsemblBacteria" id="ABX38506">
        <property type="protein sequence ID" value="ABX38506"/>
        <property type="gene ID" value="Daci_5878"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_5878"/>
    <dbReference type="eggNOG" id="COG1167">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_017584_0_0_4"/>
    <dbReference type="OMA" id="SRKPAYL"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003700">
        <property type="term" value="F:DNA-binding transcription factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030170">
        <property type="term" value="F:pyridoxal phosphate binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008483">
        <property type="term" value="F:transaminase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009058">
        <property type="term" value="P:biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd07377">
        <property type="entry name" value="WHTH_GntR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.640.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004839">
        <property type="entry name" value="Aminotransferase_I/II"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015424">
        <property type="entry name" value="PyrdxlP-dep_Trfase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015421">
        <property type="entry name" value="PyrdxlP-dep_Trfase_major"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000524">
        <property type="entry name" value="Tscrpt_reg_HTH_GntR"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036390">
        <property type="entry name" value="WH_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00155">
        <property type="entry name" value="Aminotran_1_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00392">
        <property type="entry name" value="GntR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00345">
        <property type="entry name" value="HTH_GNTR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46785">
        <property type="entry name" value="SSF46785"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53383">
        <property type="entry name" value="SSF53383"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50949">
        <property type="entry name" value="HTH_GNTR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-0032">Aminotransferase</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="HTH gntR-type" evidence="2">
        <location>
            <begin position="16"/>
            <end position="84"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00005384"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS50949"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ABX38506.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="455" mass="48144" checksum="FE0ADCFB4CCDD0C4" modified="2008-01-15" version="1">MLLPSPWTPRLARIEASAAERLARALADDIVEGRLAGGDRLPAHRDLADRLQIGLGSVTRAYALLERRGLTRSVRGRGTFVASQQAQAGEDIDLSSNAPPAAISARVLARTLTGIARSIDTDHFNFYAPPQGHLEHRRVLARWLQTLGLNVEPDHMVLTSSARQALSLAFDLVCRPRGRLLTERITYPGAIALARRKGCALQGLAIDAQGLLPQALADALEGIPAAEGKVVYLTPTLHNPTTATMGAERRQAIVDICRSAGAWIIEDGVYAACLPDHASLAHLATLAPEITLHVNGLSKSLGPGLQVGMLVLPASLGGAAVELVQEMSMAPSALSCAVIDEWLSHGVVASLQADLRHEAQRRCRLAASHLASHLSGSGLVLHPEAYNAWLPMEREAAGRLVSAAAALGLKLTDPGSLMVDPQEQASGLRICLGAPRFDALDGALAQLARLLTAVP</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="86" xmlns="http://uniprot.org/uniprot">
    <accession>A9C182</accession>
    <name>A9C182_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="10">Methylenetetrahydrofolate reductase</fullName>
            <ecNumber evidence="10">1.5.1.20</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="11" type="ordered locus">Daci_5917</name>
    </gene>
    <organism evidence="11 12">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="11 12" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="12">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="12" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="12">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="2 10">
            <text>(6S)-5-methyl-5,6,7,8-tetrahydrofolate + NAD(+) = (6R)-5,10-methylene-5,6,7,8-tetrahydrofolate + H(+) + NADH</text>
            <dbReference type="Rhea" id="RHEA:19821"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:15636"/>
            <dbReference type="ChEBI" id="CHEBI:18608"/>
            <dbReference type="ChEBI" id="CHEBI:57540"/>
            <dbReference type="ChEBI" id="CHEBI:57945"/>
            <dbReference type="EC" id="1.5.1.20"/>
        </reaction>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1 10">
            <text>(6S)-5-methyl-5,6,7,8-tetrahydrofolate + NADP(+) = (6R)-5,10-methylene-5,6,7,8-tetrahydrofolate + H(+) + NADPH</text>
            <dbReference type="Rhea" id="RHEA:19817"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:15636"/>
            <dbReference type="ChEBI" id="CHEBI:18608"/>
            <dbReference type="ChEBI" id="CHEBI:57783"/>
            <dbReference type="ChEBI" id="CHEBI:58349"/>
            <dbReference type="EC" id="1.5.1.20"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="3 10">
            <name>FAD</name>
            <dbReference type="ChEBI" id="CHEBI:57692"/>
        </cofactor>
    </comment>
    <comment type="pathway">
        <text evidence="4 10">One-carbon metabolism; tetrahydrofolate interconversion.</text>
    </comment>
    <comment type="similarity">
        <text evidence="5 10">Belongs to the methylenetetrahydrofolate reductase family.</text>
    </comment>
    <dbReference type="EC" id="1.5.1.20" evidence="10"/>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX38545.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012207714.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_5917"/>
    <dbReference type="PRIDE" id="A9C182"/>
    <dbReference type="EnsemblBacteria" id="ABX38545">
        <property type="protein sequence ID" value="ABX38545"/>
        <property type="gene ID" value="Daci_5917"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_5917"/>
    <dbReference type="eggNOG" id="COG0685">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_025841_0_0_4"/>
    <dbReference type="OMA" id="EMHPQAR"/>
    <dbReference type="UniPathway" id="UPA00193"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005829">
        <property type="term" value="C:cytosol"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0106312">
        <property type="term" value="F:methylenetetrahydrofolate reductase NADH activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="RHEA"/>
    </dbReference>
    <dbReference type="GO" id="GO:0106313">
        <property type="term" value="F:methylenetetrahydrofolate reductase NADPH activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="RHEA"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009086">
        <property type="term" value="P:methionine biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0035999">
        <property type="term" value="P:tetrahydrofolate interconversion"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniPathway"/>
    </dbReference>
    <dbReference type="CDD" id="cd00537">
        <property type="entry name" value="MTHFR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029041">
        <property type="entry name" value="FAD-linked_oxidoreductase-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003171">
        <property type="entry name" value="Mehydrof_redctse-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004620">
        <property type="entry name" value="MTHF_reductase_bac"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02219">
        <property type="entry name" value="MTHFR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51730">
        <property type="entry name" value="SSF51730"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00676">
        <property type="entry name" value="fadh2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="7 10" id="KW-0274">FAD</keyword>
    <keyword evidence="6 10" id="KW-0285">Flavoprotein</keyword>
    <keyword evidence="9" id="KW-0520">NAD</keyword>
    <keyword evidence="8 10 11" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="12" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00000431"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00001287"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00001974"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00004777"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00006743"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022630"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022827"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00023002"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00023027"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="RuleBase" id="RU003862"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="EMBL" id="ABX38545.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="275" mass="30178" checksum="281DB68CB477F817" modified="2008-01-15" version="1">MSFPISFEFFPTKTPEGAAKHVQVRKNLYARKPQFCSVTYGAGGSTQAGTFNMVRDIQSEGVSAASHFSCVGATHDKVRAELQELKAMGVRRIVALRGDLPSGYGLGGEFQYASDLVEFIRREFGDWFHIEVAAYPEVHPQAKSPHSDLEAFAAKVRAGADSAITQYFYNADAYCRFVDAARGMGLDVPVVPGIMPITSSTQLMRFSDACGAEIPRWIRLRLQAYGDDTASIRAFGLDVVSRLCEQLRSQGAPGLHFYTMNQSVATLEICDRLGL</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="61" xmlns="http://uniprot.org/uniprot">
    <accession>A9C1G7</accession>
    <name>A9C1G7_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">LPS-assembly lipoprotein LptE</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="primary">lptE</name>
        <name evidence="3" type="ordered locus">Daci_6002</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="4" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="2">Together with LptD, is involved in the assembly of lipopolysaccharide (LPS) at the surface of the outer membrane. Required for the proper assembly of LptD. Binds LPS and may serve as the LPS recognition site at the outer membrane.</text>
    </comment>
    <comment type="subunit">
        <text evidence="2">Component of the lipopolysaccharide transport and assembly complex. Interacts with LptD.</text>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the LptE lipoprotein family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX38630.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012207799.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_6002"/>
    <dbReference type="PRIDE" id="A9C1G7"/>
    <dbReference type="EnsemblBacteria" id="ABX38630">
        <property type="protein sequence ID" value="ABX38630"/>
        <property type="gene ID" value="Daci_6002"/>
    </dbReference>
    <dbReference type="GeneID" id="60690364"/>
    <dbReference type="KEGG" id="dac:Daci_6002"/>
    <dbReference type="eggNOG" id="COG2980">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_103309_0_0_4"/>
    <dbReference type="OMA" id="YADMQND"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009279">
        <property type="term" value="C:cell outer membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043165">
        <property type="term" value="P:Gram-negative-bacterium-type cell outer membrane assembly"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01186">
        <property type="entry name" value="LPS_assembly_LptE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007485">
        <property type="entry name" value="LPS_assembly_LptE"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR38098">
        <property type="entry name" value="PTHR38098"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04390">
        <property type="entry name" value="LptE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2" id="KW-0998">Cell outer membrane</keyword>
    <keyword evidence="3" id="KW-0449">Lipoprotein</keyword>
    <keyword evidence="1 2" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01186"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ABX38630.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="168" mass="18864" checksum="575C065F128EC9AD" modified="2008-01-15" version="1">MQKRTLLTALALAPLLGACGFRLRGVPTFVFRSLYIQAGRGSPVARELSRNLASASDKLTVLRDPASPDDAEAIFQIVSERQERVIVGMNALGQVRELQLRLRVRFKLRTPNGDEPIPETEILQQRDVTYNETNALSKEAEEAMLYKDMRTDIVQQLLRRLAAVKSLT</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="56" xmlns="http://uniprot.org/uniprot">
    <accession>A9C1N4</accession>
    <name>A9C1N4_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="8">Replication gene A</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="8" type="ordered locus">Daci_2581</name>
        <name evidence="9" type="ordered locus">Daci_2615</name>
    </gene>
    <organism evidence="8 10">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="8 10" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10">DSM 14801 / SPH-1</strain>
            <strain evidence="8">SPH-1</strain>
        </source>
    </reference>
    <reference evidence="10" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="8" key="3">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="8">SPH-1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="1">Possible endonuclease which induces a single-strand cut and initiates DNA replication.</text>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the phage GPA family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX35219.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX35253.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012204498.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_2581"/>
    <dbReference type="PRIDE" id="A9C1N4"/>
    <dbReference type="EnsemblBacteria" id="ABX35219">
        <property type="protein sequence ID" value="ABX35219"/>
        <property type="gene ID" value="Daci_2581"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="ABX35253">
        <property type="protein sequence ID" value="ABX35253"/>
        <property type="gene ID" value="Daci_2615"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_2581"/>
    <dbReference type="KEGG" id="dac:Daci_2615"/>
    <dbReference type="eggNOG" id="ENOG502Z7TX">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_013772_4_2_4"/>
    <dbReference type="OMA" id="GGELMTR"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004519">
        <property type="term" value="F:endonuclease activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006260">
        <property type="term" value="P:DNA replication"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008766">
        <property type="entry name" value="Replication_gene_A"/>
    </dbReference>
    <dbReference type="Pfam" id="PF05840">
        <property type="entry name" value="Phage_GPA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-0235">DNA replication</keyword>
    <keyword evidence="5" id="KW-0255">Endonuclease</keyword>
    <keyword evidence="6" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="4" id="KW-0540">Nuclease</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="7">
        <location>
            <begin position="569"/>
            <end position="595"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="7">
        <location>
            <begin position="625"/>
            <end position="659"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00003293"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00009260"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022705"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022722"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022759"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="ABX35219.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="ABX35253.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="659" mass="73153" checksum="339CBF599457252F" modified="2008-01-15" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-01-19" version="56" xmlns="http://uniprot.org/uniprot">
    <accession>A9C1U0</accession>
    <name>A9C1U0_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Phage baseplate assembly protein V</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Daci_2637</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="4" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX35275.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_2637"/>
    <dbReference type="EnsemblBacteria" id="ABX35275">
        <property type="protein sequence ID" value="ABX35275"/>
        <property type="gene ID" value="Daci_2637"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_2637"/>
    <dbReference type="eggNOG" id="COG4540">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_088884_2_1_4"/>
    <dbReference type="OMA" id="PPDIDEQ"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.50.230">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006531">
        <property type="entry name" value="Gp5/Vgr_OB"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013046">
        <property type="entry name" value="GpV/Gp45"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037026">
        <property type="entry name" value="Vgr_OB-fold_dom_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04717">
        <property type="entry name" value="Phage_base_V"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01644">
        <property type="entry name" value="phage_P2_V"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Phage_base_V" evidence="2">
        <location>
            <begin position="67"/>
            <end position="136"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="29"/>
            <end position="49"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF04717"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ABX35275.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="241" mass="25257" checksum="C34B868765275841" modified="2008-01-15" version="1">MELRPALRRGPAPCRAACRAACGSVRHARHTATRKGPAGTMNAMDSPVAQTESPYEIIRRLEGLIRTGTIAAVRHARPARCRVKTGNLTTNWIPWLAMRAAGENASVWWPPAVGEQCLLLSPGGDLLGAVALTGIYSSAAAQPSDREGVCHTQWSPTDFMEHDSTTGRLNINVAHGITLRVGNSVISIDEQGISLQASGGSATVNAQGLAGAPDVTTGPISLLRHRHGGVRAGDAVTQGPL</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="79" xmlns="http://uniprot.org/uniprot">
    <accession>A9C201</accession>
    <name>A9C201_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Transcriptional regulator, TetR family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ordered locus">Daci_2999</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="5" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX35637.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="PRIDE" id="A9C201"/>
    <dbReference type="EnsemblBacteria" id="ABX35637">
        <property type="protein sequence ID" value="ABX35637"/>
        <property type="gene ID" value="Daci_2999"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_2999"/>
    <dbReference type="eggNOG" id="COG1309">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_069356_27_1_4"/>
    <dbReference type="OMA" id="SMVIAEP"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009057">
        <property type="entry name" value="Homeobox-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001647">
        <property type="entry name" value="HTH_TetR"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036271">
        <property type="entry name" value="Tet_transcr_reg_TetR-rel_C_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR039536">
        <property type="entry name" value="TetR_C_Proteobacteria"/>
    </dbReference>
    <dbReference type="Pfam" id="PF14246">
        <property type="entry name" value="TetR_C_7"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00440">
        <property type="entry name" value="TetR_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00455">
        <property type="entry name" value="HTHTETR"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46689">
        <property type="entry name" value="SSF46689"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48498">
        <property type="entry name" value="SSF48498"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50977">
        <property type="entry name" value="HTH_TETR_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HTH tetR-type" evidence="3">
        <location>
            <begin position="40"/>
            <end position="100"/>
        </location>
    </feature>
    <feature type="DNA-binding region" description="H-T-H motif" evidence="1">
        <location>
            <begin position="63"/>
            <end position="82"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="1"/>
            <end position="42"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="2">
        <location>
            <begin position="1"/>
            <end position="22"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00335"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="PROSITE" id="PS50977"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="ABX35637.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="240" mass="26275" checksum="8C9DED2BD4B4FE52" modified="2008-01-15" version="1">MLHNQARPCTTPNGTTRNPMESEITPAAPRPRGRPARPEHEANDAALAAATWLLLNEGYAATTMEAVARRAGLAKKTLYRFAANREDLVALVVRSWTDGFRPALSADAQSASEVAPALAEILRVIAARVLSAEAVGMFRLLTTDFPAKPELLEVYQRNGIERGRGMLVDWLRRQCGKGLLRAEQPEVVCDLLLSMVIAEPLRQMALGLTPPVPEWDPGPRIDDAVRLLAGHSCRMEPADR</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="58" xmlns="http://uniprot.org/uniprot">
    <accession>A9C243</accession>
    <name>A9C243_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Taurine dioxygenase</fullName>
            <ecNumber evidence="3">1.14.11.17</ecNumber>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Daci_3041</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="4" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EC" id="1.14.11.17" evidence="3"/>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX35679.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_3041"/>
    <dbReference type="PRIDE" id="A9C243"/>
    <dbReference type="EnsemblBacteria" id="ABX35679">
        <property type="protein sequence ID" value="ABX35679"/>
        <property type="gene ID" value="Daci_3041"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_3041"/>
    <dbReference type="eggNOG" id="COG2175">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_036005_2_1_4"/>
    <dbReference type="OMA" id="FVDAYPK"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000908">
        <property type="term" value="F:taurine dioxygenase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.60.130.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR042098">
        <property type="entry name" value="TauD-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003819">
        <property type="entry name" value="TauD/TfdA-like"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02668">
        <property type="entry name" value="TauD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-0223">Dioxygenase</keyword>
    <keyword evidence="1 3" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="TauD" evidence="2">
        <location>
            <begin position="40"/>
            <end position="308"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023002"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF02668"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ABX35679.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="333" mass="36857" checksum="7412760DF4C11973" modified="2008-01-15" version="1">MGLPPMQALRRDAVNAVTEASHLSTVAQDLEQDRQQPLQIQPLSGRIGAVVHGARLSGELAAEQFTQIHAALLRHRVLFFRGQHHLTDASHQAFGRLFGEIESHPTVPAPDGTAFLELNSQHGGRADSWHTDVTFKAAFPKVCVLRAVTLPGHGGDTVWANTVAAYEGLPEPLRQLAEQLWAVHGNDYDYAENFRQNAASQTETAGRASYRKVFTRKTIESEQPLVHVHPETGEKALLLGHFAKRIKGLRANESTALLQLFNERIIRLENTVRWQWAQGDVAIWDNRATQHYAINDYGDAHRVVRRVTVTGTVATSVDGRHSVDITVPEPLAA</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="64" xmlns="http://uniprot.org/uniprot">
    <accession>A9C2L8</accession>
    <name>A9C2L8_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="7">Major facilitator superfamily MFS_1</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ordered locus">Daci_3735</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="8" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX36367.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012205561.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_3735"/>
    <dbReference type="PRIDE" id="A9C2L8"/>
    <dbReference type="EnsemblBacteria" id="ABX36367">
        <property type="protein sequence ID" value="ABX36367"/>
        <property type="gene ID" value="Daci_3735"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_3735"/>
    <dbReference type="eggNOG" id="COG2814">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_001265_23_0_4"/>
    <dbReference type="OMA" id="HSRLVGC"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0022857">
        <property type="term" value="F:transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.1250.20">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011701">
        <property type="entry name" value="MFS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020846">
        <property type="entry name" value="MFS_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036259">
        <property type="entry name" value="MFS_trans_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07690">
        <property type="entry name" value="MFS_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF103473">
        <property type="entry name" value="SSF103473"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50850">
        <property type="entry name" value="MFS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4 5" id="KW-0472">Membrane</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 5" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="3 5" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="45"/>
            <end position="70"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="82"/>
            <end position="100"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="106"/>
            <end position="128"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="140"/>
            <end position="159"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="165"/>
            <end position="187"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="224"/>
            <end position="243"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="249"/>
            <end position="269"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="281"/>
            <end position="300"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="344"/>
            <end position="363"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="369"/>
            <end position="390"/>
        </location>
    </feature>
    <feature type="domain" description="MFS" evidence="6">
        <location>
            <begin position="16"/>
            <end position="396"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="PROSITE" id="PS50850"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="ABX36367.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="403" mass="42059" checksum="77522BD70A5515F4" modified="2008-01-15" version="1">MNAFPASDTVRMPRSLVLLFAAASGLSVANVYYAQPLLEALAADFGISHAAVGGVVTATQAGCALALVLLVPLGDRLERRHLMLLQLLGLVLALAAVSTARSAVLLLASMLAVGLLGTAMTQGLIAYAASASQAHERGRVVGAAQGGVFIGLLLARVFAGAVGDLAGWRGVYACSALLMLALAWPLWRQLPRLAVPLHAPSYTQLLASMLQLLRQDRMLRTRGMLALLMFATFNIFWSALVLPLSAPPYSLSLTAIGAFGLAGVVGALAAARAGHWADQGFAQRTSLGALVILLLAWAPIALLEQSLWALVAGIVLLDLGGQALHVTNQSLIFRSNPQAHSRLVGMYMLFYAVGSGLGALISTNAYARFGWHGVCVAGAAFSLAALVFWAMTRETAVQASVPA</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="67" xmlns="http://uniprot.org/uniprot">
    <accession>A9C2Q0</accession>
    <name>A9C2Q0_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="7">Methyl-accepting chemotaxis sensory transducer</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ordered locus">Daci_3767</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="8" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the methyl-accepting chemotaxis (MCP) protein family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX36399.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012205593.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_3767"/>
    <dbReference type="PRIDE" id="A9C2Q0"/>
    <dbReference type="EnsemblBacteria" id="ABX36399">
        <property type="protein sequence ID" value="ABX36399"/>
        <property type="gene ID" value="Daci_3767"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_3767"/>
    <dbReference type="eggNOG" id="COG0840">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_000445_107_20_4"/>
    <dbReference type="OMA" id="ESRNRHT"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004888">
        <property type="term" value="F:transmembrane signaling receptor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006935">
        <property type="term" value="P:chemotaxis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0007165">
        <property type="term" value="P:signal transduction"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004090">
        <property type="entry name" value="Chemotax_Me-accpt_rcpt"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003660">
        <property type="entry name" value="HAMP_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR024478">
        <property type="entry name" value="HlyB_4HB_MCP"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004089">
        <property type="entry name" value="MCPsignal_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12729">
        <property type="entry name" value="4HB_MCP_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00015">
        <property type="entry name" value="MCPsignal"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00260">
        <property type="entry name" value="CHEMTRNSDUCR"/>
    </dbReference>
    <dbReference type="SMART" id="SM00283">
        <property type="entry name" value="MA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50111">
        <property type="entry name" value="CHEMOTAXIS_TRANSDUC_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50885">
        <property type="entry name" value="HAMP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="4" id="KW-0472">Membrane</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0807">Transducer</keyword>
    <keyword evidence="4" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="4" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="4">
        <location>
            <begin position="13"/>
            <end position="33"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="4">
        <location>
            <begin position="193"/>
            <end position="217"/>
        </location>
    </feature>
    <feature type="domain" description="HAMP" evidence="6">
        <location>
            <begin position="227"/>
            <end position="270"/>
        </location>
    </feature>
    <feature type="domain" description="Methyl-accepting transducer" evidence="5">
        <location>
            <begin position="275"/>
            <end position="504"/>
        </location>
    </feature>
    <feature type="coiled-coil region" evidence="3">
        <location>
            <begin position="294"/>
            <end position="321"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00029447"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00284"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="PROSITE" id="PS50111"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="PROSITE" id="PS50885"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="ABX36399.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="544" mass="58214" checksum="CBA812CEED814941" modified="2008-01-15" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="76" xmlns="http://uniprot.org/uniprot">
    <accession>A9C336</accession>
    <name>A9C336_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Transcriptional regulator, LysR family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ordered locus">Daci_4518</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="5" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the LysR transcriptional regulatory family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX37147.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012206317.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_4518"/>
    <dbReference type="PRIDE" id="A9C336"/>
    <dbReference type="EnsemblBacteria" id="ABX37147">
        <property type="protein sequence ID" value="ABX37147"/>
        <property type="gene ID" value="Daci_4518"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_4518"/>
    <dbReference type="eggNOG" id="COG0583">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_039613_6_4_4"/>
    <dbReference type="OMA" id="YCLAMAP"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003700">
        <property type="term" value="F:DNA-binding transcription factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005119">
        <property type="entry name" value="LysR_subst-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000847">
        <property type="entry name" value="Tscrpt_reg_HTH_LysR"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036390">
        <property type="entry name" value="WH_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00126">
        <property type="entry name" value="HTH_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03466">
        <property type="entry name" value="LysR_substrate"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00039">
        <property type="entry name" value="HTHLYSR"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46785">
        <property type="entry name" value="SSF46785"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50931">
        <property type="entry name" value="HTH_LYSR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2" id="KW-0472">Membrane</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="2" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="227"/>
            <end position="251"/>
        </location>
    </feature>
    <feature type="domain" description="HTH lysR-type" evidence="3">
        <location>
            <begin position="1"/>
            <end position="58"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00009437"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="PROSITE" id="PS50931"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="ABX37147.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="306" mass="33138" checksum="CCDEC7D337EAC6BE" modified="2008-01-15" version="1">MELRHLRYFVAVAEQGNVSRAARKLFIAQPPLSAQLKQLEEEVGAALFTRLPRGVRLTPAGESLLEDARAILARAQQAPLRARERQQSRQGVVRLGLVPSAMHSVLPGLLRRIADAGWNLRVEAREMITSQQLRALRAGELDLGFGRPGKGEPLAEEVAGMDDPYCLAMAPSHPLAAGEGALPLQSAAHEPFVGFARYEDADYFDRTVALCLDAGFTPSIRHEAGQFVNVLALVACGLGVAIVPSSFASLYRGKLVFRPLQQSRYQSRLAVLAVAGSTDGESDAGRVAQAAALELKQFGRRLARLR</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="99" xmlns="http://uniprot.org/uniprot">
    <accession>A9C3C9</accession>
    <name>A9C3C9_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="14">Phenylalanine--tRNA ligase beta subunit</fullName>
            <ecNumber evidence="14">6.1.1.20</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="14">Phenylalanyl-tRNA synthetase beta subunit</fullName>
            <shortName evidence="14">PheRS</shortName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="14" type="primary">pheT</name>
        <name evidence="19" type="ordered locus">Daci_4611</name>
    </gene>
    <organism evidence="19 20">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="19 20" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="20">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="20" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="20">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="1 14">
            <text>ATP + L-phenylalanine + tRNA(Phe) = AMP + diphosphate + H(+) + L-phenylalanyl-tRNA(Phe)</text>
            <dbReference type="Rhea" id="RHEA:19413"/>
            <dbReference type="Rhea" id="RHEA-COMP:9668"/>
            <dbReference type="Rhea" id="RHEA-COMP:9699"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:33019"/>
            <dbReference type="ChEBI" id="CHEBI:58095"/>
            <dbReference type="ChEBI" id="CHEBI:78442"/>
            <dbReference type="ChEBI" id="CHEBI:78531"/>
            <dbReference type="ChEBI" id="CHEBI:456215"/>
            <dbReference type="EC" id="6.1.1.20"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="14">
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </cofactor>
        <text evidence="14">Binds 2 magnesium ions per tetramer.</text>
    </comment>
    <comment type="subunit">
        <text evidence="4 14">Tetramer of two alpha and two beta subunits.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="2 14">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="3 14">Belongs to the phenylalanyl-tRNA synthetase beta subunit family. Type 1 subfamily.</text>
    </comment>
    <dbReference type="EC" id="6.1.1.20" evidence="14"/>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX37240.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012206410.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_4611"/>
    <dbReference type="PRIDE" id="A9C3C9"/>
    <dbReference type="EnsemblBacteria" id="ABX37240">
        <property type="protein sequence ID" value="ABX37240"/>
        <property type="gene ID" value="Daci_4611"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_4611"/>
    <dbReference type="eggNOG" id="COG0072">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="eggNOG" id="COG0073">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_016891_0_0_4"/>
    <dbReference type="OMA" id="ISYNWLK"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000287">
        <property type="term" value="F:magnesium ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004826">
        <property type="term" value="F:phenylalanine-tRNA ligase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000049">
        <property type="term" value="F:tRNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006432">
        <property type="term" value="P:phenylalanyl-tRNA aminoacylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd00769">
        <property type="entry name" value="PheRS_beta_core"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="CDD" id="cd02796">
        <property type="entry name" value="tRNA_bind_bactPheRS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.50.140">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.70.380">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.930.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.50.40.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00283">
        <property type="entry name" value="Phe_tRNA_synth_beta1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045864">
        <property type="entry name" value="aa-tRNA-synth_II/BPL/LPL"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005146">
        <property type="entry name" value="B3/B4_tRNA-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009061">
        <property type="entry name" value="DNA-bd_dom_put_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005121">
        <property type="entry name" value="Fdx_antiC-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036690">
        <property type="entry name" value="Fdx_antiC-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012340">
        <property type="entry name" value="NA-bd_OB-fold"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045060">
        <property type="entry name" value="Phe-tRNA-ligase_IIc_bsu"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004532">
        <property type="entry name" value="Phe-tRNA-ligase_IIc_bsu_bact"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020825">
        <property type="entry name" value="Phe-tRNA_synthase-like_B3/B4"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041616">
        <property type="entry name" value="PheRS_beta_core"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002547">
        <property type="entry name" value="tRNA-bd_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR033714">
        <property type="entry name" value="tRNA_bind_bactPheRS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005147">
        <property type="entry name" value="tRNA_synthase_B5-dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10947">
        <property type="entry name" value="PTHR10947"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03483">
        <property type="entry name" value="B3_4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03484">
        <property type="entry name" value="B5"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03147">
        <property type="entry name" value="FDX-ACB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01588">
        <property type="entry name" value="tRNA_bind"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF17759">
        <property type="entry name" value="tRNA_synthFbeta"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00873">
        <property type="entry name" value="B3_4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00874">
        <property type="entry name" value="B5"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00896">
        <property type="entry name" value="FDX-ACB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46955">
        <property type="entry name" value="SSF46955"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50249">
        <property type="entry name" value="SSF50249"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54991">
        <property type="entry name" value="SSF54991"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55681">
        <property type="entry name" value="SSF55681"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00472">
        <property type="entry name" value="pheT_bact"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51483">
        <property type="entry name" value="B5"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51447">
        <property type="entry name" value="FDX_ACB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50886">
        <property type="entry name" value="TRBD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="13 14 19" id="KW-0030">Aminoacyl-tRNA synthetase</keyword>
    <keyword evidence="9 14" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="14" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="6 14 19" id="KW-0436">Ligase</keyword>
    <keyword evidence="10 14" id="KW-0460">Magnesium</keyword>
    <keyword evidence="7 14" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="8 14" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="12 14" id="KW-0648">Protein biosynthesis</keyword>
    <keyword evidence="20" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="11 15" id="KW-0694">RNA-binding</keyword>
    <keyword evidence="5 15" id="KW-0820">tRNA-binding</keyword>
    <feature type="domain" description="TRNA-binding" evidence="16">
        <location>
            <begin position="39"/>
            <end position="153"/>
        </location>
    </feature>
    <feature type="domain" description="B5" evidence="18">
        <location>
            <begin position="407"/>
            <end position="482"/>
        </location>
    </feature>
    <feature type="domain" description="FDX-ACB" evidence="17">
        <location>
            <begin position="709"/>
            <end position="814"/>
        </location>
    </feature>
    <feature type="binding site" evidence="14">
        <location>
            <position position="460"/>
        </location>
        <ligand>
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="14">
        <location>
            <position position="466"/>
        </location>
        <ligand>
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="14">
        <location>
            <position position="469"/>
        </location>
        <ligand>
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="14">
        <location>
            <position position="470"/>
        </location>
        <ligand>
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00000395"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00004496"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00008653"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00011209"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022555"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022598"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00022842"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="ARBA" id="ARBA00022884"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="12">
        <source>
            <dbReference type="ARBA" id="ARBA00022917"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="13">
        <source>
            <dbReference type="ARBA" id="ARBA00023146"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="14">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00283"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="15">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00209"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="16">
        <source>
            <dbReference type="PROSITE" id="PS50886"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="17">
        <source>
            <dbReference type="PROSITE" id="PS51447"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="18">
        <source>
            <dbReference type="PROSITE" id="PS51483"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="19">
        <source>
            <dbReference type="EMBL" id="ABX37240.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="20">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="815" mass="89153" checksum="3ADFCE80470EA4C3" modified="2008-01-15" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="77" xmlns="http://uniprot.org/uniprot">
    <accession>A9C3D5</accession>
    <name>A9C3D5_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="1 3">Isocitrate lyase</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="8" type="ordered locus">Daci_4617</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="9" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="2">
            <text>D-threo-isocitrate = glyoxylate + succinate</text>
            <dbReference type="Rhea" id="RHEA:13245"/>
            <dbReference type="ChEBI" id="CHEBI:15562"/>
            <dbReference type="ChEBI" id="CHEBI:30031"/>
            <dbReference type="ChEBI" id="CHEBI:36655"/>
            <dbReference type="EC" id="4.1.3.1"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="6">
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </cofactor>
        <text evidence="6">Can also use Mn(2+) ion.</text>
    </comment>
    <comment type="similarity">
        <text evidence="3">Belongs to the isocitrate lyase/PEP mutase superfamily. Isocitrate lyase family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX37246.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_4617"/>
    <dbReference type="PRIDE" id="A9C3D5"/>
    <dbReference type="EnsemblBacteria" id="ABX37246">
        <property type="protein sequence ID" value="ABX37246"/>
        <property type="gene ID" value="Daci_4617"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_4617"/>
    <dbReference type="eggNOG" id="COG2224">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_019214_2_0_4"/>
    <dbReference type="OMA" id="LEKDWAE"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004451">
        <property type="term" value="F:isocitrate lyase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0019752">
        <property type="term" value="P:carboxylic acid metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd00377">
        <property type="entry name" value="ICL_PEPM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.20.20.60">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR039556">
        <property type="entry name" value="ICL/PEPM"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006254">
        <property type="entry name" value="Isocitrate_lyase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018523">
        <property type="entry name" value="Isocitrate_lyase_ph_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015813">
        <property type="entry name" value="Pyrv/PenolPyrv_Kinase-like_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR040442">
        <property type="entry name" value="Pyrv_Kinase-like_dom_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR21631">
        <property type="entry name" value="PTHR21631"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00463">
        <property type="entry name" value="ICL"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF001362">
        <property type="entry name" value="Isocit_lyase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51621">
        <property type="entry name" value="SSF51621"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01346">
        <property type="entry name" value="isocit_lyase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00161">
        <property type="entry name" value="ISOCITRATE_LYASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3 8" id="KW-0456">Lyase</keyword>
    <keyword evidence="6" id="KW-0460">Magnesium</keyword>
    <keyword evidence="6" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="7">
        <location>
            <begin position="1"/>
            <end position="32"/>
        </location>
    </feature>
    <feature type="region of interest" description="Substrate binding" evidence="5">
        <location>
            <begin position="127"/>
            <end position="129"/>
        </location>
    </feature>
    <feature type="region of interest" description="Substrate binding" evidence="5">
        <location>
            <begin position="232"/>
            <end position="233"/>
        </location>
    </feature>
    <feature type="region of interest" description="Substrate binding" evidence="5">
        <location>
            <begin position="353"/>
            <end position="357"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="7">
        <location>
            <begin position="1"/>
            <end position="15"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="7">
        <location>
            <begin position="18"/>
            <end position="32"/>
        </location>
    </feature>
    <feature type="active site" description="Proton acceptor" evidence="4">
        <location>
            <position position="231"/>
        </location>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <position position="193"/>
        </location>
        <ligand>
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <position position="268"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <position position="387"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00017446"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023531"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="PIRNR" id="PIRNR001362"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="PIRSR" id="PIRSR001362-1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="PIRSR" id="PIRSR001362-2"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="PIRSR" id="PIRSR001362-3"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="ABX37246.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="471" mass="51775" checksum="F43A5E0786FEEE27" modified="2008-01-15" version="1">MRSSIRLKFDPKADARKPLVSTTSQESNMPQSLTQQLSREQQISALEKDWAQNPRWKGVKRGYSAADVVRLRGSLQPEYTLAQRGAELLWDRINGGAKKGYVNAFGAISAGQAMQQAKAGLEAVYLSGWQVAADGNTSETMYPDQSLYAYDSVPTMVRRINNTFKRADEIQWGRGINPGDKEFIDYFLPIVADAEAGFGGVLNAFELMKNMIAAGAAGVHFEDQLAAVKKCGHMGGKVLVPTQEAVEKLISARFAADVMGVPTIVLARTDAEAANLITSDHDANDKPFLTGERTQEGFYRVRNGMEQSISRGVAYAPYADLVWCETGVPDIGFAREFAQAVHAACPGKLLSYNCSPSFNWKKNLNDSQIASFQEDLSALGYKFQFITLAGIHINWFNTFKFAHAYANGEGMKHYVNMVQEPEFAAREQGYTFVSHQQEVGAGYFDDVTTVIQGGSSSVKALTGSTEEEQFH</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="88" xmlns="http://uniprot.org/uniprot">
    <accession>A9C3E7</accession>
    <name>A9C3E7_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="6">23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD</fullName>
            <ecNumber evidence="6">2.1.1.190</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="6">23S rRNA(m5U1939)-methyltransferase</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="6" type="primary">rlmD</name>
        <name evidence="8" type="ordered locus">Daci_4629</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="9" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="6">Catalyzes the formation of 5-methyl-uridine at position 1939 (m5U1939) in 23S rRNA.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="6">
            <text>S-adenosyl-L-methionine + uridine(1939) in 23S rRNA = 5-methyluridine(1939) in 23S rRNA + H(+) + S-adenosyl-L-homocysteine</text>
            <dbReference type="Rhea" id="RHEA:42908"/>
            <dbReference type="Rhea" id="RHEA-COMP:10278"/>
            <dbReference type="Rhea" id="RHEA-COMP:10279"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:57856"/>
            <dbReference type="ChEBI" id="CHEBI:59789"/>
            <dbReference type="ChEBI" id="CHEBI:65315"/>
            <dbReference type="ChEBI" id="CHEBI:74447"/>
            <dbReference type="EC" id="2.1.1.190"/>
        </reaction>
    </comment>
    <comment type="similarity">
        <text evidence="6">Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family. RlmD subfamily.</text>
    </comment>
    <dbReference type="EC" id="2.1.1.190" evidence="6"/>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX37258.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012206428.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_4629"/>
    <dbReference type="PRIDE" id="A9C3E7"/>
    <dbReference type="EnsemblBacteria" id="ABX37258">
        <property type="protein sequence ID" value="ABX37258"/>
        <property type="gene ID" value="Daci_4629"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_4629"/>
    <dbReference type="eggNOG" id="COG2265">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_014689_8_2_4"/>
    <dbReference type="OMA" id="FYAGDMK"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051539">
        <property type="term" value="F:4 iron, 4 sulfur cluster binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005506">
        <property type="term" value="F:iron ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003723">
        <property type="term" value="F:RNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0070041">
        <property type="term" value="F:rRNA (uridine-C5-)-methyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.50.140">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.150">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01010">
        <property type="entry name" value="23SrRNA_methyltr_RlmD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001566">
        <property type="entry name" value="23S_rRNA_MeTrfase_RlmD"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR030391">
        <property type="entry name" value="MeTrfase_TrmA_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012340">
        <property type="entry name" value="NA-bd_OB-fold"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029063">
        <property type="entry name" value="SAM-dependent_MTases_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010280">
        <property type="entry name" value="U5_MeTrfase_fam"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11061">
        <property type="entry name" value="PTHR11061"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF05958">
        <property type="entry name" value="tRNA_U5-meth_tr"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50249">
        <property type="entry name" value="SSF50249"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53335">
        <property type="entry name" value="SSF53335"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51687">
        <property type="entry name" value="SAM_MT_RNA_M5U"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01231">
        <property type="entry name" value="TRMA_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="1 6" id="KW-0004">4Fe-4S</keyword>
    <keyword evidence="6" id="KW-0408">Iron</keyword>
    <keyword evidence="6" id="KW-0411">Iron-sulfur</keyword>
    <keyword evidence="6" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="3 6 7" id="KW-0489">Methyltransferase</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 6" id="KW-0698">rRNA processing</keyword>
    <keyword evidence="5 6 7" id="KW-0949">S-adenosyl-L-methionine</keyword>
    <keyword evidence="4 6 7" id="KW-0808">Transferase</keyword>
    <feature type="active site" description="Nucleophile" evidence="6 7">
        <location>
            <position position="444"/>
        </location>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <position position="91"/>
        </location>
        <ligand>
            <name>[4Fe-4S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:49883"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <position position="101"/>
        </location>
        <ligand>
            <name>[4Fe-4S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:49883"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <position position="104"/>
        </location>
        <ligand>
            <name>[4Fe-4S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:49883"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <position position="183"/>
        </location>
        <ligand>
            <name>[4Fe-4S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:49883"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="6 7">
        <location>
            <position position="291"/>
        </location>
        <ligand>
            <name>S-adenosyl-L-methionine</name>
            <dbReference type="ChEBI" id="CHEBI:59789"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="6 7">
        <location>
            <position position="320"/>
        </location>
        <ligand>
            <name>S-adenosyl-L-methionine</name>
            <dbReference type="ChEBI" id="CHEBI:59789"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <position position="325"/>
        </location>
        <ligand>
            <name>S-adenosyl-L-methionine</name>
            <dbReference type="ChEBI" id="CHEBI:59789"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="6 7">
        <location>
            <position position="341"/>
        </location>
        <ligand>
            <name>S-adenosyl-L-methionine</name>
            <dbReference type="ChEBI" id="CHEBI:59789"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <position position="376"/>
        </location>
        <ligand>
            <name>S-adenosyl-L-methionine</name>
            <dbReference type="ChEBI" id="CHEBI:59789"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="6 7">
        <location>
            <position position="397"/>
        </location>
        <ligand>
            <name>S-adenosyl-L-methionine</name>
            <dbReference type="ChEBI" id="CHEBI:59789"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022485"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022552"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022603"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022691"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01010"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU01024"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="ABX37258.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="490" mass="54258" checksum="DDB2D13729F9DE47" modified="2008-01-15" version="1">MSEPRDNKIPDNLPEADIDAPALPEGWLQVLSMDMDAQGVARKSDGKVVFIDGALPTELVSANTHRKKNNWEAASLTAIHRESSQRVRPGCPNFGLHAGACGGCKMQHLHVGAQVAIKQRVLEDNLWHLAKVKPETLLRPIEGPSWAYRFRSRLSVRYVAKKGKVLVGFHERKSRYIADMETCKILPPHVDAMLLPMRALIASMDARETCPQIEVACGDSVTALVLRHLEPLSENDQARLRAFAVEHNVQWWLQPKGPDTVHLMEQGGAQLDYGLPDFGITMPFKPTDFTQVNPHINRVLVTRALRLLDVKKDERVIDWFCGLGNFTLPLATQAREVLGIEGSDTLVKRSHENYAANNAQRAEGDKLAPTRFVARNLFEMTPEMLFADGVAGKWLVDPPREGAFALSKALADIHQARIGAEGAEPLPAGHEAWRFPERIVYVSCNPATLARDAGLLVHLAGYRCVSAGVVNMFPHTAHVESMAVFERCAD</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="63" xmlns="http://uniprot.org/uniprot">
    <accession>A9C3E9</accession>
    <name>A9C3E9_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">HTH-type transcriptional regulator</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Daci_4631</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="4" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the GbsR family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX37260.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012206430.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_4631"/>
    <dbReference type="PRIDE" id="A9C3E9"/>
    <dbReference type="EnsemblBacteria" id="ABX37260">
        <property type="protein sequence ID" value="ABX37260"/>
        <property type="gene ID" value="Daci_4631"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_4631"/>
    <dbReference type="eggNOG" id="COG1510">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_107540_0_0_4"/>
    <dbReference type="OMA" id="WGVNRSV"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003700">
        <property type="term" value="F:DNA-binding transcription factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd00090">
        <property type="entry name" value="HTH_ARSR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011991">
        <property type="entry name" value="ArsR-like_HTH"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000835">
        <property type="entry name" value="HTH_MarR-typ"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR026282">
        <property type="entry name" value="MJ1563"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036390">
        <property type="entry name" value="WH_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12802">
        <property type="entry name" value="MarR_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF006707">
        <property type="entry name" value="MJ1563"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46785">
        <property type="entry name" value="SSF46785"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="1" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0804">Transcription</keyword>
    <keyword evidence="1" id="KW-0805">Transcription regulation</keyword>
    <feature type="domain" description="HTH marR-type" evidence="2">
        <location>
            <begin position="26"/>
            <end position="80"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="PIRNR" id="PIRNR006707"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF12802"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ABX37260.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="186" mass="21465" checksum="D1D86E49DB002254" modified="2008-01-15" version="1">MQLSPIAHRFIHHWGDMGSSWGVNRTVAQIHALLFFHGRPLNAEEIADTLGAARSNVSNSLKELQGWELIRTSRRPGDRRDYFETSSDVWELLRTIVRERKQREFDPTSEMLRELIAEPGFDAESPDTQDRVHETLRLMESLGIWTDEMLRLSPSTLDKLLRLGASVQRFVRSEAADTRVKRGRRA</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-05-25" version="47" xmlns="http://uniprot.org/uniprot">
    <accession>A9BLR0</accession>
    <name>A9BLR0_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Daci_4218</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
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    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_4791"/>
    <dbReference type="eggNOG" id="ENOG50339QN">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_119384_1_0_4"/>
    <dbReference type="OMA" id="FTRALMS"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR021354">
        <property type="entry name" value="DUF2975"/>
    </dbReference>
    <dbReference type="Pfam" id="PF11188">
        <property type="entry name" value="DUF2975"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="21"/>
            <end position="39"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="69"/>
            <end position="90"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="110"/>
            <end position="128"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="148"/>
            <end position="169"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX37420.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="182" mass="19446" checksum="2728E7CF102A8BF5" modified="2008-01-15" version="1">MNYTPHAAGNTLRRHSQAARILIALGAVALLALPAAALLSPQDLSGQAEGLLGMPPGQPLDMAARWRTALVSLLPVGCGLYALRQLWTLFGEYLQGRVFGQQAQHALMRFAWTVLAGALALPFTRALMSVAASMGNPPGQRFVTLGLYWHDGLLVLLGVVLVSIAHVMLQARRIADENAGFV</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="104" xmlns="http://uniprot.org/uniprot">
    <accession>A9BML5</accession>
    <name>A9BML5_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="13">Carbamoyl-phosphate synthase large chain</fullName>
            <ecNumber evidence="13">6.3.5.5</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="13">Carbamoyl-phosphate synthetase ammonia chain</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="13" type="primary">carB</name>
        <name evidence="17" type="ordered locus">Daci_4931</name>
    </gene>
    <organism evidence="17 18">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="17 18" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="18">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="18" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="18">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="1 13">
            <text>2 ATP + H2O + hydrogencarbonate + L-glutamine = 2 ADP + carbamoyl phosphate + 2 H(+) + L-glutamate + phosphate</text>
            <dbReference type="Rhea" id="RHEA:18633"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:17544"/>
            <dbReference type="ChEBI" id="CHEBI:29985"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:43474"/>
            <dbReference type="ChEBI" id="CHEBI:58228"/>
            <dbReference type="ChEBI" id="CHEBI:58359"/>
            <dbReference type="ChEBI" id="CHEBI:456216"/>
            <dbReference type="EC" id="6.3.5.5"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="13">
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </cofactor>
        <cofactor evidence="13">
            <name>Mn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29035"/>
        </cofactor>
        <text evidence="13">Binds 4 Mg(2+) or Mn(2+) ions per subunit.</text>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="2">
            <name>Mn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29035"/>
        </cofactor>
    </comment>
    <comment type="pathway">
        <text evidence="13">Amino-acid biosynthesis; L-arginine biosynthesis; carbamoyl phosphate from bicarbonate: step 1/1.</text>
    </comment>
    <comment type="pathway">
        <text evidence="3 13">Pyrimidine metabolism; UMP biosynthesis via de novo pathway; (S)-dihydroorotate from bicarbonate: step 1/3.</text>
    </comment>
    <comment type="subunit">
        <text evidence="13">Composed of two chains; the small (or glutamine) chain promotes the hydrolysis of glutamine to ammonia, which is used by the large (or ammonia) chain to synthesize carbamoyl phosphate.</text>
    </comment>
    <comment type="similarity">
        <text evidence="4 13">Belongs to the CarB family.</text>
    </comment>
    <comment type="caution">
        <text evidence="13">Lacks conserved residue(s) required for the propagation of feature annotation.</text>
    </comment>
    <dbReference type="EC" id="6.3.5.5" evidence="13"/>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX37560.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_4931"/>
    <dbReference type="PRIDE" id="A9BML5"/>
    <dbReference type="EnsemblBacteria" id="ABX37560">
        <property type="protein sequence ID" value="ABX37560"/>
        <property type="gene ID" value="Daci_4931"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_4931"/>
    <dbReference type="eggNOG" id="COG0458">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_000513_1_0_4"/>
    <dbReference type="OMA" id="IEPAGIH"/>
    <dbReference type="UniPathway" id="UPA00068">
        <property type="reaction ID" value="UER00171"/>
    </dbReference>
    <dbReference type="UniPathway" id="UPA00070">
        <property type="reaction ID" value="UER00115"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004088">
        <property type="term" value="F:carbamoyl-phosphate synthase (glutamine-hydrolyzing) activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0044205">
        <property type="term" value="P:'de novo' UMP biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniPathway"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006526">
        <property type="term" value="P:arginine biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd01424">
        <property type="entry name" value="MGS_CPS_II"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.1030.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.1380">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01210_B">
        <property type="entry name" value="CPSase_L_chain_B"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011761">
        <property type="entry name" value="ATP-grasp"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006275">
        <property type="entry name" value="CarbamoylP_synth_lsu"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005480">
        <property type="entry name" value="CarbamoylP_synth_lsu_oligo"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036897">
        <property type="entry name" value="CarbamoylP_synth_lsu_oligo_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005479">
        <property type="entry name" value="CbamoylP_synth_lsu-like_ATP-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005483">
        <property type="entry name" value="CbamoylP_synth_lsu_CPSase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011607">
        <property type="entry name" value="MGS-like_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036914">
        <property type="entry name" value="MGS-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR033937">
        <property type="entry name" value="MGS_CPS_CarB"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016185">
        <property type="entry name" value="PreATP-grasp_dom_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02786">
        <property type="entry name" value="CPSase_L_D2"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02787">
        <property type="entry name" value="CPSase_L_D3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02142">
        <property type="entry name" value="MGS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00098">
        <property type="entry name" value="CPSASE"/>
    </dbReference>
    <dbReference type="SMART" id="SM01096">
        <property type="entry name" value="CPSase_L_D3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00851">
        <property type="entry name" value="MGS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48108">
        <property type="entry name" value="SSF48108"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52335">
        <property type="entry name" value="SSF52335"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52440">
        <property type="entry name" value="SSF52440"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01369">
        <property type="entry name" value="CPSaseII_lrg"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50975">
        <property type="entry name" value="ATP_GRASP"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00866">
        <property type="entry name" value="CPSASE_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00867">
        <property type="entry name" value="CPSASE_2"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51855">
        <property type="entry name" value="MGS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="13" id="KW-0028">Amino-acid biosynthesis</keyword>
    <keyword evidence="13" id="KW-0055">Arginine biosynthesis</keyword>
    <keyword evidence="9 13 14" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="5 13" id="KW-0436">Ligase</keyword>
    <keyword evidence="10" id="KW-0460">Magnesium</keyword>
    <keyword evidence="12" id="KW-0464">Manganese</keyword>
    <keyword evidence="6" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="8 13 14" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="11 13" id="KW-0665">Pyrimidine biosynthesis</keyword>
    <keyword evidence="18" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="7 13" id="KW-0677">Repeat</keyword>
    <feature type="domain" description="ATP-grasp" evidence="15">
        <location>
            <begin position="103"/>
            <end position="298"/>
        </location>
    </feature>
    <feature type="domain" description="ATP-grasp" evidence="15">
        <location>
            <begin position="650"/>
            <end position="846"/>
        </location>
    </feature>
    <feature type="domain" description="MGS-like" evidence="16">
        <location>
            <begin position="913"/>
            <end position="1052"/>
        </location>
    </feature>
    <feature type="region of interest" description="Carboxyphosphate synthetic domain" evidence="13">
        <location>
            <begin position="1"/>
            <end position="373"/>
        </location>
    </feature>
    <feature type="region of interest" description="Allosteric domain" evidence="13">
        <location>
            <begin position="913"/>
            <end position="1052"/>
        </location>
    </feature>
    <feature type="binding site" evidence="13">
        <location>
            <position position="255"/>
        </location>
        <ligand>
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
            <label>1</label>
        </ligand>
    </feature>
    <feature type="binding site" evidence="13">
        <location>
            <position position="269"/>
        </location>
    </feature>
    <feature type="binding site" evidence="13">
        <location>
            <position position="271"/>
        </location>
        <ligand>
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
            <label>2</label>
        </ligand>
    </feature>
    <feature type="binding site" evidence="13">
        <location>
            <position position="801"/>
        </location>
        <ligand>
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
            <label>3</label>
        </ligand>
    </feature>
    <feature type="binding site" evidence="13">
        <location>
            <position position="817"/>
        </location>
    </feature>
    <feature type="binding site" evidence="13">
        <location>
            <position position="819"/>
        </location>
        <ligand>
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
            <label>4</label>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001777"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00001936"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00004812"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00009799"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022598"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022737"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00022842"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="ARBA" id="ARBA00022975"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="12">
        <source>
            <dbReference type="ARBA" id="ARBA00023211"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="13">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01210"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="14">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00409"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="15">
        <source>
            <dbReference type="PROSITE" id="PS50975"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="16">
        <source>
            <dbReference type="PROSITE" id="PS51855"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="17">
        <source>
            <dbReference type="EMBL" id="ABX37560.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="18">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="1052" mass="114694" checksum="AD1FA3044104030D" modified="2008-01-15" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="74" xmlns="http://uniprot.org/uniprot">
    <accession>A9BMT6</accession>
    <name>A9BMT6_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="4">Glutamine synthetase</fullName>
            <ecNumber evidence="4">6.3.1.2</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="6" type="ordered locus">Daci_5002</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="7" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="4">
            <text>ATP + L-glutamate + NH4(+) = ADP + H(+) + L-glutamine + phosphate</text>
            <dbReference type="Rhea" id="RHEA:16169"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:28938"/>
            <dbReference type="ChEBI" id="CHEBI:29985"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:43474"/>
            <dbReference type="ChEBI" id="CHEBI:58359"/>
            <dbReference type="ChEBI" id="CHEBI:456216"/>
            <dbReference type="EC" id="6.3.1.2"/>
        </reaction>
    </comment>
    <comment type="similarity">
        <text evidence="1 3">Belongs to the glutamine synthetase family.</text>
    </comment>
    <dbReference type="EC" id="6.3.1.2" evidence="4"/>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX37631.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012206801.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_5002"/>
    <dbReference type="PRIDE" id="A9BMT6"/>
    <dbReference type="EnsemblBacteria" id="ABX37631">
        <property type="protein sequence ID" value="ABX37631"/>
        <property type="gene ID" value="Daci_5002"/>
    </dbReference>
    <dbReference type="GeneID" id="60689350"/>
    <dbReference type="KEGG" id="dac:Daci_5002"/>
    <dbReference type="eggNOG" id="COG0174">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_017290_1_2_4"/>
    <dbReference type="OMA" id="PHPHEFE"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004356">
        <property type="term" value="F:glutamate-ammonia ligase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006542">
        <property type="term" value="P:glutamine biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.10.20.70">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008147">
        <property type="entry name" value="Gln_synt_b-grasp"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036651">
        <property type="entry name" value="Gln_synt_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014746">
        <property type="entry name" value="Gln_synth/guanido_kin_cat_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008146">
        <property type="entry name" value="Gln_synth_cat_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027303">
        <property type="entry name" value="Gln_synth_gly_rich_site"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004809">
        <property type="entry name" value="Gln_synth_I"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027302">
        <property type="entry name" value="Gln_synth_N_conserv_site"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00120">
        <property type="entry name" value="Gln-synt_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03951">
        <property type="entry name" value="Gln-synt_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM01230">
        <property type="entry name" value="Gln-synt_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54368">
        <property type="entry name" value="SSF54368"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55931">
        <property type="entry name" value="SSF55931"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00653">
        <property type="entry name" value="GlnA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00180">
        <property type="entry name" value="GLNA_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00181">
        <property type="entry name" value="GLNA_ATP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="4" id="KW-0436">Ligase</keyword>
    <keyword evidence="4" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="2" id="KW-0597">Phosphoprotein</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Gln-synt_C" evidence="5">
        <location>
            <begin position="104"/>
            <end position="381"/>
        </location>
    </feature>
    <feature type="modified residue" description="O-AMP-tyrosine" evidence="2">
        <location>
            <position position="400"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00009897"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="PIRSR" id="PIRSR604809-50"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="RuleBase" id="RU000384"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="RuleBase" id="RU004356"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="SMART" id="SM01230"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="ABX37631.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="471" mass="52311" checksum="849B0EA24CFB1FB6" modified="2008-01-15" version="1">MAKTVADVLNMVKENEVKFVDLRFTDTRGKEQHVTVPVSHFDEDKFTSGHAFDGSSVAGWKGIEASDMQLMPDPATANIDPFFEETTLFLQCDVIEPGDGKAYDRDPRSVAKRAEAYLKASGLGDTAYFGPEPEFFIFDGVRWNTEPGSTFYEIEEYEAPWNSGAKFESGNRGHRPRNKGGYFPVPPVDSTQDLRAEMVLLLEQLGIPVEVFHHEVAGAGQNEIGTRFSTLVERADWTQVMKYVIWNVANTYGKTATFMPKPYPGDNGSGMHVHQSVWKDGKNLFAGDGYAGLSDFALYYIGGIIKHARALNAITNPGTNSYKRLVPGFEAPVKLAYSAKNRSASIRIPYVANPKGRRVEARFPDPLMNPYLGFSALLMAGLDGVENKIHPGEAATKDLYHLPPEEDKLVPTVCHSLDQALEALDADRSFLTKGGVFSDSMLDAYIELKMGEVTRYRQAVHPVEYDMYFSL</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="93" xmlns="http://uniprot.org/uniprot">
    <accession>A9BN23</accession>
    <name>A9BN23_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="4 9">4-hydroxy-tetrahydrodipicolinate synthase</fullName>
            <shortName evidence="9">HTPA synthase</shortName>
            <ecNumber evidence="4 9">4.3.3.7</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="9" type="primary">dapA</name>
        <name evidence="11" type="ordered locus">Daci_5089</name>
    </gene>
    <organism evidence="11 12">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="11 12" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="12">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="12" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="12">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="2 9">Catalyzes the condensation of (S)-aspartate-beta-semialdehyde [(S)-ASA] and pyruvate to 4-hydroxy-tetrahydrodipicolinate (HTPA).</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1 9">
            <text>L-aspartate 4-semialdehyde + pyruvate = (2S,4S)-4-hydroxy-2,3,4,5-tetrahydrodipicolinate + H(+) + H2O</text>
            <dbReference type="Rhea" id="RHEA:34171"/>
            <dbReference type="ChEBI" id="CHEBI:15361"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:67139"/>
            <dbReference type="ChEBI" id="CHEBI:537519"/>
            <dbReference type="EC" id="4.3.3.7"/>
        </reaction>
    </comment>
    <comment type="pathway">
        <text evidence="3 9">Amino-acid biosynthesis; L-lysine biosynthesis via DAP pathway; (S)-tetrahydrodipicolinate from L-aspartate: step 3/4.</text>
    </comment>
    <comment type="subunit">
        <text evidence="9">Homotetramer; dimer of dimers.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="9">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="9 10">Belongs to the DapA family.</text>
    </comment>
    <comment type="caution">
        <text evidence="9">Was originally thought to be a dihydrodipicolinate synthase (DHDPS), catalyzing the condensation of (S)-aspartate-beta-semialdehyde [(S)-ASA] and pyruvate to dihydrodipicolinate (DHDP). However, it was shown in E.coli that the product of the enzymatic reaction is not dihydrodipicolinate but in fact (4S)-4-hydroxy-2,3,4,5-tetrahydro-(2S)-dipicolinic acid (HTPA), and that the consecutive dehydration reaction leading to DHDP is not spontaneous but catalyzed by DapB.</text>
    </comment>
    <dbReference type="EC" id="4.3.3.7" evidence="4 9"/>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX37718.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012206888.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_5089"/>
    <dbReference type="PRIDE" id="A9BN23"/>
    <dbReference type="EnsemblBacteria" id="ABX37718">
        <property type="protein sequence ID" value="ABX37718"/>
        <property type="gene ID" value="Daci_5089"/>
    </dbReference>
    <dbReference type="GeneID" id="60689439"/>
    <dbReference type="KEGG" id="dac:Daci_5089"/>
    <dbReference type="eggNOG" id="COG0329">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_049343_7_1_4"/>
    <dbReference type="OMA" id="GMDACVP"/>
    <dbReference type="UniPathway" id="UPA00034">
        <property type="reaction ID" value="UER00017"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008840">
        <property type="term" value="F:4-hydroxy-tetrahydrodipicolinate synthase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0019877">
        <property type="term" value="P:diaminopimelate biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009089">
        <property type="term" value="P:lysine biosynthetic process via diaminopimelate"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniPathway"/>
    </dbReference>
    <dbReference type="CDD" id="cd00950">
        <property type="entry name" value="DHDPS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.20.20.70">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00418">
        <property type="entry name" value="DapA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013785">
        <property type="entry name" value="Aldolase_TIM"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005263">
        <property type="entry name" value="DapA"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002220">
        <property type="entry name" value="DapA-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020625">
        <property type="entry name" value="Schiff_base-form_aldolases_AS"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR12128">
        <property type="entry name" value="PTHR12128"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00701">
        <property type="entry name" value="DHDPS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF001365">
        <property type="entry name" value="DHDPS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00146">
        <property type="entry name" value="DHPICSNTHASE"/>
    </dbReference>
    <dbReference type="SMART" id="SM01130">
        <property type="entry name" value="DHDPS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00674">
        <property type="entry name" value="dapA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00666">
        <property type="entry name" value="DHDPS_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5 9" id="KW-0028">Amino-acid biosynthesis</keyword>
    <keyword evidence="9" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="6 9" id="KW-0220">Diaminopimelate biosynthesis</keyword>
    <keyword evidence="9 10 11" id="KW-0456">Lyase</keyword>
    <keyword evidence="7 9" id="KW-0457">Lysine biosynthesis</keyword>
    <keyword evidence="12" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="8 9" id="KW-0704">Schiff base</keyword>
    <feature type="active site" description="Proton donor/acceptor" evidence="9">
        <location>
            <position position="140"/>
        </location>
    </feature>
    <feature type="active site" description="Schiff-base intermediate with substrate" evidence="9">
        <location>
            <position position="168"/>
        </location>
    </feature>
    <feature type="binding site" evidence="9">
        <location>
            <position position="51"/>
        </location>
        <ligand>
            <name>pyruvate</name>
            <dbReference type="ChEBI" id="CHEBI:15361"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="9">
        <location>
            <position position="210"/>
        </location>
        <ligand>
            <name>pyruvate</name>
            <dbReference type="ChEBI" id="CHEBI:15361"/>
        </ligand>
    </feature>
    <feature type="site" description="Part of a proton relay during catalysis" evidence="9">
        <location>
            <position position="50"/>
        </location>
    </feature>
    <feature type="site" description="Part of a proton relay during catalysis" evidence="9">
        <location>
            <position position="113"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00000594"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00003294"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00005120"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00012086"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022605"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022915"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023154"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00023270"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00418"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="PIRNR" id="PIRNR001365"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="EMBL" id="ABX37718.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="298" mass="31637" checksum="9FFA514C1CE49432" modified="2008-01-15" version="1">MTSSSVALTGSIVALITPMHEDGSVDYPALRKLIDWHVAEGTDCIGVVGTTGESPTVNVEEHCEIIRVSVEQAAGRVPVMAGCGANSTHEAIELARYAKKVGADSQLQVVPYYNKPTQEGQYQHFKAIAEAVGDLPVVLYNVPGRSVADMQHDTVLRLAQIPAIIGIKEATGNIERAQWLIREVPKDFGVYSGDDPTAVALMLCGGHGNISVTANVAPRLMSDLCKAALAGDVRTAMDIQLRLMPVHKNLFVEANPIPVKWAAARLGLCGPAMRLPMTPLSKNLEATVEAALGSAGLL</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="74" xmlns="http://uniprot.org/uniprot">
    <accession>A9BN55</accession>
    <name>A9BN55_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="8">Na+/solute symporter</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="8" type="ordered locus">Daci_5121</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="9" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2 6">Belongs to the sodium:solute symporter (SSF) (TC 2.A.21) family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX37750.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012206920.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_5121"/>
    <dbReference type="PRIDE" id="A9BN55"/>
    <dbReference type="EnsemblBacteria" id="ABX37750">
        <property type="protein sequence ID" value="ABX37750"/>
        <property type="gene ID" value="Daci_5121"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_5121"/>
    <dbReference type="eggNOG" id="COG0591">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_018808_15_3_4"/>
    <dbReference type="OMA" id="ACTNIAY"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0022857">
        <property type="term" value="F:transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.1730.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038377">
        <property type="entry name" value="Na/Glc_symporter_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001734">
        <property type="entry name" value="Na/solute_symporter"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00474">
        <property type="entry name" value="SSF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50283">
        <property type="entry name" value="NA_SOLUT_SYMP_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5 7" id="KW-0472">Membrane</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 7" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="4 7" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="6"/>
            <end position="23"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="43"/>
            <end position="66"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="72"/>
            <end position="90"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="117"/>
            <end position="141"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="147"/>
            <end position="168"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="180"/>
            <end position="199"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="219"/>
            <end position="242"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="254"/>
            <end position="277"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="308"/>
            <end position="333"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="354"/>
            <end position="374"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="380"/>
            <end position="398"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="405"/>
            <end position="426"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="432"/>
            <end position="449"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00006434"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="RuleBase" id="RU362091"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="ABX37750.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="462" mass="48803" checksum="F9692BFF10AFC437" modified="2008-01-15" version="1">MLLDISVVVIYAAAMLLLGWYGMRRAKTQEDFLVAGRNLGPGLYMGTMAATVIGGASTVGTVRLGYVYGISGFWLCAALGAGLLVLNLFLAKPLLRLRICTVTQVLERRYSARTKQASALVMLAYSLMLAATSVIAIGTVMQVLFDLPLWISILVGGGVVVIYSAVGGMWSLTLTDIVQFVIKTAGLMLILLPICLYRVGGWDQLVAQLPASSFDVTHIGWDTIATYFVIYFFGIMIGQDVWQRVFTARSERVAAVAGSLAGVYCVVYGLVGALVGMTARVLLPDLDNANNAFAAIVQASLPDGIRGLVIAAALAAMMSTASAAMLAGSTVLAEDLVPLLRGGRPLVDVRWHRLLTLLVGLAVLGIALVVDDVLNALTTAYNLLVGGMLVPLIGAIYWRRATTAGAIASMLLGCTTAVAFMVRDGLAANTPIYASLAVSTASFILISLAQRTQQRSLSGIQS</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="101" xmlns="http://uniprot.org/uniprot">
    <accession>A9BNE1</accession>
    <name>A9BNE1_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="3 13">Chaperone protein ClpB</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="13" type="primary">clpB</name>
        <name evidence="15" type="ordered locus">Daci_5207</name>
    </gene>
    <organism evidence="15 16">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="15 16" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="16">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="16" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="16">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="9">Part of a stress-induced multi-chaperone system, it is involved in the recovery of the cell from heat-induced damage, in cooperation with DnaK, DnaJ and GrpE. Acts before DnaK, in the processing of protein aggregates. Protein binding stimulates the ATPase activity; ATP hydrolysis unfolds the denatured protein aggregates, which probably helps expose new hydrophobic binding sites on the surface of ClpB-bound aggregates, contributing to the solubilization and refolding of denatured protein aggregates by DnaK.</text>
    </comment>
    <comment type="subunit">
        <text evidence="10">Homohexamer. The oligomerization is ATP-dependent.</text>
    </comment>
    <comment type="subunit">
        <text evidence="13">Homohexamer; The oligomerization is ATP-dependent.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1 13">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2 12">Belongs to the ClpA/ClpB family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX37836.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012207006.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_5207"/>
    <dbReference type="PRIDE" id="A9BNE1"/>
    <dbReference type="EnsemblBacteria" id="ABX37836">
        <property type="protein sequence ID" value="ABX37836"/>
        <property type="gene ID" value="Daci_5207"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_5207"/>
    <dbReference type="eggNOG" id="COG0542">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_005070_4_0_4"/>
    <dbReference type="OMA" id="SKMMQGE"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016887">
        <property type="term" value="F:ATP hydrolysis activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0042026">
        <property type="term" value="P:protein refolding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009408">
        <property type="term" value="P:response to heat"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.1780.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="3"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003593">
        <property type="entry name" value="AAA+_ATPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003959">
        <property type="entry name" value="ATPase_AAA_core"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017730">
        <property type="entry name" value="Chaperonin_ClpB"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019489">
        <property type="entry name" value="Clp_ATPase_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036628">
        <property type="entry name" value="Clp_N_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004176">
        <property type="entry name" value="Clp_R_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001270">
        <property type="entry name" value="ClpA/B"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018368">
        <property type="entry name" value="ClpA/B_CS1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR028299">
        <property type="entry name" value="ClpA/B_CS2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041546">
        <property type="entry name" value="ClpA/ClpB_AAA_lid"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00004">
        <property type="entry name" value="AAA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07724">
        <property type="entry name" value="AAA_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF17871">
        <property type="entry name" value="AAA_lid_9"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02861">
        <property type="entry name" value="Clp_N"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="Pfam" id="PF10431">
        <property type="entry name" value="ClpB_D2-small"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00300">
        <property type="entry name" value="CLPPROTEASEA"/>
    </dbReference>
    <dbReference type="SMART" id="SM00382">
        <property type="entry name" value="AAA"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SMART" id="SM01086">
        <property type="entry name" value="ClpB_D2-small"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF81923">
        <property type="entry name" value="SSF81923"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR03346">
        <property type="entry name" value="chaperone_ClpB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51903">
        <property type="entry name" value="CLP_R"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00870">
        <property type="entry name" value="CLPAB_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00871">
        <property type="entry name" value="CLPAB_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="6 12" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="8 12" id="KW-0143">Chaperone</keyword>
    <keyword evidence="7 13" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="13" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="5 12" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="16" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4 11" id="KW-0677">Repeat</keyword>
    <keyword evidence="13" id="KW-0346">Stress response</keyword>
    <feature type="domain" description="Clp R" evidence="14">
        <location>
            <begin position="3"/>
            <end position="147"/>
        </location>
    </feature>
    <feature type="coiled-coil region" evidence="13">
        <location>
            <begin position="413"/>
            <end position="493"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004496"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00008675"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00017574"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022737"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023054"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00023186"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00025613"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00026057"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU01251"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="12">
        <source>
            <dbReference type="RuleBase" id="RU004432"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="13">
        <source>
            <dbReference type="RuleBase" id="RU362034"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="14">
        <source>
            <dbReference type="PROSITE" id="PS51903"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="15">
        <source>
            <dbReference type="EMBL" id="ABX37836.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="16">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="870" mass="96343" checksum="DE8217F78088FC10" modified="2008-01-15" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="104" xmlns="http://uniprot.org/uniprot">
    <accession>A9BNJ4</accession>
    <name>A9BNJ4_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="2 6">GTPase Era</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="6" type="primary">era</name>
        <name evidence="13" type="ordered locus">Daci_5260</name>
    </gene>
    <organism evidence="13 14">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="13 14" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="14">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="14" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="14">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="6">An essential GTPase that binds both GDP and GTP, with rapid nucleotide exchange. Plays a role in 16S rRNA processing and 30S ribosomal subunit biogenesis and possibly also in cell cycle regulation and energy metabolism.</text>
    </comment>
    <comment type="subunit">
        <text evidence="6">Monomer.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="6">Cytoplasm</location>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="6">Cell inner membrane</location>
            <topology evidence="6">Peripheral membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="1 6 8 9">Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. Era GTPase family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX37889.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012207059.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_5260"/>
    <dbReference type="PRIDE" id="A9BNJ4"/>
    <dbReference type="EnsemblBacteria" id="ABX37889">
        <property type="protein sequence ID" value="ABX37889"/>
        <property type="gene ID" value="Daci_5260"/>
    </dbReference>
    <dbReference type="GeneID" id="60689604"/>
    <dbReference type="KEGG" id="dac:Daci_5260"/>
    <dbReference type="eggNOG" id="COG1159">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_038009_1_2_4"/>
    <dbReference type="OMA" id="WAEVDVI"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005525">
        <property type="term" value="F:GTP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003924">
        <property type="term" value="F:GTPase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0070181">
        <property type="term" value="F:small ribosomal subunit rRNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0042274">
        <property type="term" value="P:ribosomal small subunit biogenesis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd04163">
        <property type="entry name" value="Era"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.300.20">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00367">
        <property type="entry name" value="GTPase_Era"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR030388">
        <property type="entry name" value="G_ERA_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006073">
        <property type="entry name" value="GTP-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005662">
        <property type="entry name" value="GTP-bd_Era"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015946">
        <property type="entry name" value="KH_dom-like_a/b"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004044">
        <property type="entry name" value="KH_dom_type_2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009019">
        <property type="entry name" value="KH_sf_prok-type"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005225">
        <property type="entry name" value="Small_GTP-bd_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR42698">
        <property type="entry name" value="PTHR42698"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07650">
        <property type="entry name" value="KH_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01926">
        <property type="entry name" value="MMR_HSR1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00326">
        <property type="entry name" value="GTP1OBG"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54814">
        <property type="entry name" value="SSF54814"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00436">
        <property type="entry name" value="era"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00231">
        <property type="entry name" value="small_GTP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51713">
        <property type="entry name" value="G_ERA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50823">
        <property type="entry name" value="KH_TYPE_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="6" id="KW-0997">Cell inner membrane</keyword>
    <keyword evidence="6" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="6" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="5 6 8" id="KW-0342">GTP-binding</keyword>
    <keyword evidence="6" id="KW-0472">Membrane</keyword>
    <keyword evidence="3 6 8" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="14" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="6" id="KW-0690">Ribosome biogenesis</keyword>
    <keyword evidence="4 6 7" id="KW-0694">RNA-binding</keyword>
    <keyword evidence="6" id="KW-0699">rRNA-binding</keyword>
    <feature type="domain" description="Era-type G" evidence="12">
        <location>
            <begin position="50"/>
            <end position="217"/>
        </location>
    </feature>
    <feature type="domain" description="KH type-2" evidence="11">
        <location>
            <begin position="248"/>
            <end position="329"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="10">
        <location>
            <begin position="25"/>
            <end position="46"/>
        </location>
    </feature>
    <feature type="region of interest" description="G1" evidence="8">
        <location>
            <begin position="58"/>
            <end position="65"/>
        </location>
    </feature>
    <feature type="region of interest" description="G2" evidence="8">
        <location>
            <begin position="84"/>
            <end position="88"/>
        </location>
    </feature>
    <feature type="region of interest" description="G3" evidence="8">
        <location>
            <begin position="105"/>
            <end position="108"/>
        </location>
    </feature>
    <feature type="region of interest" description="G4" evidence="8">
        <location>
            <begin position="166"/>
            <end position="169"/>
        </location>
    </feature>
    <feature type="region of interest" description="G5" evidence="8">
        <location>
            <begin position="196"/>
            <end position="198"/>
        </location>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <begin position="58"/>
            <end position="65"/>
        </location>
        <ligand>
            <name>GTP</name>
            <dbReference type="ChEBI" id="CHEBI:37565"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <begin position="105"/>
            <end position="109"/>
        </location>
        <ligand>
            <name>GTP</name>
            <dbReference type="ChEBI" id="CHEBI:37565"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <begin position="166"/>
            <end position="169"/>
        </location>
        <ligand>
            <name>GTP</name>
            <dbReference type="ChEBI" id="CHEBI:37565"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00007921"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00020484"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022884"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023134"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00367"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00118"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU01050"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="RuleBase" id="RU003761"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="11">
        <source>
            <dbReference type="PROSITE" id="PS50823"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="12">
        <source>
            <dbReference type="PROSITE" id="PS51713"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="13">
        <source>
            <dbReference type="EMBL" id="ABX37889.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="14">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="344" mass="38011" checksum="1FC16C7827CA6478" modified="2008-01-15" version="1">MNQDKPPAPAQTAAELDALLAAAKPGAGAARTASAPDEAQAPEVPTGPQRCGLIAIVGKPNVGKSTLMNALVGQKISITSRKAQTTRHRITGIRSRAATQFIFVDTPGFQTKHSTALNKSLNKTVMGAIGDVDLILFVVEAGQFTLADAKVLSLFKPGIPTLLIANKLDTVGRRAEIAPWLKSMQERHPFAEFVPMSAKSKGDIERLFGICEKYLPEQDWMYAPDELTDRSEKFLASETVREKLFRFTGDELPYTSTVVIDKFEEEASKQHKRFIRVAATIVVERDGHKAMIIGEKGERLKRISTEARQELEKLMDAKVFLEVWVKVRSGWADDEARVRSFGYE</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="52" xmlns="http://uniprot.org/uniprot">
    <accession>A9BNT4</accession>
    <name>A9BNT4_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_5350</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX37979.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012207148.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_5350"/>
    <dbReference type="PRIDE" id="A9BNT4"/>
    <dbReference type="EnsemblBacteria" id="ABX37979">
        <property type="protein sequence ID" value="ABX37979"/>
        <property type="gene ID" value="Daci_5350"/>
    </dbReference>
    <dbReference type="GeneID" id="60689698"/>
    <dbReference type="KEGG" id="dac:Daci_5350"/>
    <dbReference type="eggNOG" id="COG3169">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_133782_0_0_4"/>
    <dbReference type="OMA" id="WYGHLKH"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007437">
        <property type="entry name" value="DUF486"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR38482">
        <property type="entry name" value="PTHR38482"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04342">
        <property type="entry name" value="DMT_6"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF021239">
        <property type="entry name" value="UCP021239"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="7"/>
            <end position="28"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="40"/>
            <end position="57"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="77"/>
            <end position="94"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="100"/>
            <end position="117"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX37979.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="120" mass="13633" checksum="E8AB543E23812A5F" modified="2008-01-15" version="1">MNWLQHIPVGLQTVVLLAMSNVFMTFAWYGHLKNHASSPWYVAALVSWGIALFEYLLQVPANRIGHTQFSVAQLKIIQEVITLSVFAPFAVLYLNQPLKWDFLWAGLCMVGAVYFIFRSG</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2021-06-02" version="47" xmlns="http://uniprot.org/uniprot">
    <accession>A9BNX8</accession>
    <name>A9BNX8_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_5394</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX38023.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012207192.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_5394"/>
    <dbReference type="EnsemblBacteria" id="ABX38023">
        <property type="protein sequence ID" value="ABX38023"/>
        <property type="gene ID" value="Daci_5394"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_5394"/>
    <dbReference type="eggNOG" id="ENOG502ZU9N">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_108885_1_0_4"/>
    <dbReference type="OMA" id="WALNLQF"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009936">
        <property type="entry name" value="DUF1468"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07331">
        <property type="entry name" value="TctB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="9"/>
            <end position="29"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="41"/>
            <end position="63"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="75"/>
            <end position="95"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="101"/>
            <end position="118"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="130"/>
            <end position="149"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX38023.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="162" mass="17207" checksum="1E7EB6EE9FF38200" modified="2008-01-15" version="1">MKIKSQKDFFSGVMFLVIGLAFAIGATNYTVGSGARMGPGYFPLILGVLMSILGTAICFTGLTKGPSDGDKIGKWAWKQVFFVLAANFAFGVLLVGVPNLGIPQFGLIVAIYALVFIASLGGHAFKFKEVAILSTVLAVGSYVAFVWALNLQFPVWPSFITG</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="66" xmlns="http://uniprot.org/uniprot">
    <accession>A9BNZ7</accession>
    <name>A9BNZ7_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="7">Methyl-accepting chemotaxis sensory transducer</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ordered locus">Daci_5413</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="8" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the methyl-accepting chemotaxis (MCP) protein family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX38042.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_5413"/>
    <dbReference type="PRIDE" id="A9BNZ7"/>
    <dbReference type="EnsemblBacteria" id="ABX38042">
        <property type="protein sequence ID" value="ABX38042"/>
        <property type="gene ID" value="Daci_5413"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_5413"/>
    <dbReference type="eggNOG" id="COG0840">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_000445_107_18_4"/>
    <dbReference type="OMA" id="KHASAQI"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004888">
        <property type="term" value="F:transmembrane signaling receptor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006935">
        <property type="term" value="P:chemotaxis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0007165">
        <property type="term" value="P:signal transduction"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004090">
        <property type="entry name" value="Chemotax_Me-accpt_rcpt"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003660">
        <property type="entry name" value="HAMP_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004089">
        <property type="entry name" value="MCPsignal_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00015">
        <property type="entry name" value="MCPsignal"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00260">
        <property type="entry name" value="CHEMTRNSDUCR"/>
    </dbReference>
    <dbReference type="SMART" id="SM00283">
        <property type="entry name" value="MA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50111">
        <property type="entry name" value="CHEMOTAXIS_TRANSDUC_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50885">
        <property type="entry name" value="HAMP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-0472">Membrane</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0807">Transducer</keyword>
    <keyword evidence="4" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="4" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="4">
        <location>
            <begin position="35"/>
            <end position="57"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="4">
        <location>
            <begin position="82"/>
            <end position="102"/>
        </location>
    </feature>
    <feature type="domain" description="HAMP" evidence="6">
        <location>
            <begin position="104"/>
            <end position="156"/>
        </location>
    </feature>
    <feature type="domain" description="Methyl-accepting transducer" evidence="5">
        <location>
            <begin position="161"/>
            <end position="390"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="3">
        <location>
            <begin position="428"/>
            <end position="464"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="3">
        <location>
            <begin position="433"/>
            <end position="464"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00029447"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00284"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="PROSITE" id="PS50111"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="PROSITE" id="PS50885"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="ABX38042.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="464" mass="47789" checksum="C71E06E84424EFA2" modified="2008-01-15" version="1">MVPSTGFSPRPSGHMYKRWHVGVLGLGRLPIGWRLVIAFGGINLLVFTMMAVTVFSLGQAEQALAAEGATTVAEQALVHTRWWVLGLGAAVCVLALVAWFSLRRGIVQPLGQAILIAETVAAGDLSQEFSTELQGDFGRLLGALGTMEDTLTELVGRIKQSTDSIGLSAGEIDAGNSDLSRRTEAQVSALAQTAASMEQLTATVRQNADRAHSASGLAVDASSTAKRGGAVVSEVVQTMEAISGSSRKIVDIIQVIEGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAGRSAEAAKQIKELITTSVRQVESGAGLVNQAGATMQEIVGAVGQVSGLLGEMSQALREQSEGIAQVNAAVGHMDSATQENAALVQQASRAASALSERAQDLEQAVGAFKLDDEPESAAGAGFSAAQAKPALAPSVAVASAASSPSSPRPQQRAPTPAARSLQSLELAQH</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="59" xmlns="http://uniprot.org/uniprot">
    <accession>A9BNZ8</accession>
    <name>A9BNZ8_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="15">Peptidase M50</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="15" type="ordered locus">Daci_5414</name>
    </gene>
    <organism evidence="15 16">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="15 16" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="16">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="16" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="16">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </cofactor>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="3">Cell membrane</location>
            <topology evidence="3">Multi-pass membrane protein</topology>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="2">Membrane</location>
            <topology evidence="2">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="4">Belongs to the peptidase M50B family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX38043.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_5414"/>
    <dbReference type="EnsemblBacteria" id="ABX38043">
        <property type="protein sequence ID" value="ABX38043"/>
        <property type="gene ID" value="Daci_5414"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_5414"/>
    <dbReference type="eggNOG" id="COG1994">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_086979_0_0_4"/>
    <dbReference type="OMA" id="HEIMHGL"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008237">
        <property type="term" value="F:metallopeptidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006508">
        <property type="term" value="P:proteolysis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd06158">
        <property type="entry name" value="S2P-M50_like_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR044537">
        <property type="entry name" value="S2P-M50-like"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="9" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="13 14" id="KW-0472">Membrane</keyword>
    <keyword evidence="8" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="12" id="KW-0482">Metalloprotease</keyword>
    <keyword evidence="6" id="KW-0645">Protease</keyword>
    <keyword evidence="16" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="7 14" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="11 14" id="KW-1133">Transmembrane helix</keyword>
    <keyword evidence="10" id="KW-0862">Zinc</keyword>
    <feature type="transmembrane region" description="Helical" evidence="14">
        <location>
            <begin position="95"/>
            <end position="114"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="14">
        <location>
            <begin position="135"/>
            <end position="161"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="14">
        <location>
            <begin position="181"/>
            <end position="206"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="14">
        <location>
            <begin position="218"/>
            <end position="237"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001947"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00004651"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00007931"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022670"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00022833"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="12">
        <source>
            <dbReference type="ARBA" id="ARBA00023049"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="13">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="14">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="15">
        <source>
            <dbReference type="EMBL" id="ABX38043.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="16">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="260" mass="28513" checksum="BE1142277EBCC3A4" modified="2008-01-15" version="1">MGHCQSAGNHHIYAARAQRTGSGGCQRQGWPASETMPAVDISNLIQTVLIYALPVLFAITVHEAAHGYAARHFGDNTAAMMGRITLNPIKHIDPIGTILMPLLLYFATSGAFLFGYAKPVPVRFDQLRNPRRDMIWVALAGPASNFVQALLWGVLLVVLVGSGVGERFFIEMCRAGILVNLVMWAFNLFPLPPLDGGRILVGLLPWRQAQWVSRIEPWGFFIVMGLVIAGVVGSLWLRPLMDLGYAVIDFALTPLIALLR</sequence>
</entry>
<entry dataset="Swiss-Prot" created="2009-03-24" modified="2022-08-03" version="75" xmlns="http://uniprot.org/uniprot">
    <accession>A9BP16</accession>
    <name>ISPE_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">4-diphosphocytidyl-2-C-methyl-D-erythritol kinase</fullName>
            <shortName evidence="1">CMK</shortName>
            <ecNumber evidence="1">2.7.1.148</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="1">4-(cytidine-5'-diphospho)-2-C-methyl-D-erythritol kinase</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="1" type="primary">ispE</name>
        <name type="ordered locus">Daci_5432</name>
    </gene>
    <organism>
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference key="1">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain>DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="1">Catalyzes the phosphorylation of the position 2 hydroxy group of 4-diphosphocytidyl-2C-methyl-D-erythritol.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>4-CDP-2-C-methyl-D-erythritol + ATP = 4-CDP-2-C-methyl-D-erythritol 2-phosphate + ADP + H(+)</text>
            <dbReference type="Rhea" id="RHEA:18437"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:57823"/>
            <dbReference type="ChEBI" id="CHEBI:57919"/>
            <dbReference type="ChEBI" id="CHEBI:456216"/>
            <dbReference type="EC" id="2.7.1.148"/>
        </reaction>
    </comment>
    <comment type="pathway">
        <text evidence="1">Isoprenoid biosynthesis; isopentenyl diphosphate biosynthesis via DXP pathway; isopentenyl diphosphate from 1-deoxy-D-xylulose 5-phosphate: step 3/6.</text>
    </comment>
    <comment type="similarity">
        <text evidence="1">Belongs to the GHMP kinase family. IspE subfamily.</text>
    </comment>
    <dbReference type="EC" id="2.7.1.148" evidence="1"/>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX38061.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012207230.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A9BP16"/>
    <dbReference type="SMR" id="A9BP16"/>
    <dbReference type="STRING" id="398578.Daci_5432"/>
    <dbReference type="PRIDE" id="A9BP16"/>
    <dbReference type="EnsemblBacteria" id="ABX38061">
        <property type="protein sequence ID" value="ABX38061"/>
        <property type="gene ID" value="Daci_5432"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_5432"/>
    <dbReference type="eggNOG" id="COG1947">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_053057_3_0_4"/>
    <dbReference type="OMA" id="RWPSPAK"/>
    <dbReference type="UniPathway" id="UPA00056">
        <property type="reaction ID" value="UER00094"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0050515">
        <property type="term" value="F:4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0019288">
        <property type="term" value="P:isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniPathway"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016310">
        <property type="term" value="P:phosphorylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016114">
        <property type="term" value="P:terpenoid biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.230.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.70.890">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00061">
        <property type="entry name" value="IspE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013750">
        <property type="entry name" value="GHMP_kinase_C_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036554">
        <property type="entry name" value="GHMP_kinase_C_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006204">
        <property type="entry name" value="GHMP_kinase_N_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004424">
        <property type="entry name" value="IspE"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020568">
        <property type="entry name" value="Ribosomal_S5_D2-typ_fold"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014721">
        <property type="entry name" value="Ribosomal_S5_D2-typ_fold_subgr"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43527:SF2">
        <property type="entry name" value="PTHR43527:SF2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08544">
        <property type="entry name" value="GHMP_kinases_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00288">
        <property type="entry name" value="GHMP_kinases_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF010376">
        <property type="entry name" value="IspE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54211">
        <property type="entry name" value="SSF54211"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55060">
        <property type="entry name" value="SSF55060"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00154">
        <property type="entry name" value="ispE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword id="KW-0067">ATP-binding</keyword>
    <keyword id="KW-0414">Isoprene biosynthesis</keyword>
    <keyword id="KW-0418">Kinase</keyword>
    <keyword id="KW-0547">Nucleotide-binding</keyword>
    <keyword id="KW-1185">Reference proteome</keyword>
    <keyword id="KW-0808">Transferase</keyword>
    <feature type="chain" id="PRO_1000092082" description="4-diphosphocytidyl-2-C-methyl-D-erythritol kinase">
        <location>
            <begin position="1"/>
            <end position="287"/>
        </location>
    </feature>
    <feature type="active site" evidence="1">
        <location>
            <position position="12"/>
        </location>
    </feature>
    <feature type="active site" evidence="1">
        <location>
            <position position="137"/>
        </location>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <begin position="95"/>
            <end position="105"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000255" key="1">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00061"/>
        </source>
    </evidence>
    <sequence length="287" mass="31597" checksum="23BB0DE4A0C65834" modified="2008-01-15" version="1">MRSLHDVPAPAKLNLFLHITGRRADGYHLLQSVFMLLDWHDTLHFDRRGDGQISREDLSGMALPADDLIVRAARALQQATGCRAGVHIGVEKRLPAQAGMGGGSSDAASTLIALNRLWQLNLTRRELQRIALDLGADVPFFLCGNSAWVEGIGEHITPLEQAHALPPQRFVVVKPEAGLETLSIFRDATLKRDHAHATIEDFAADHYGFGQNDLQPVAERLQPEVKKAIDWLNSLKLHARMTGSGSAVFAPLTQTIDLKDAPGAWNVRVCSNLQAHPLKDWLKDESL</sequence>
</entry>
<entry dataset="Swiss-Prot" created="2009-04-14" modified="2022-08-03" version="81" xmlns="http://uniprot.org/uniprot">
    <accession>A9BP18</accession>
    <name>RL25_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">50S ribosomal protein L25</fullName>
        </recommendedName>
        <alternativeName>
            <fullName evidence="1">General stress protein CTC</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="1" type="primary">rplY</name>
        <name evidence="1" type="synonym">ctc</name>
        <name type="ordered locus">Daci_5434</name>
    </gene>
    <organism>
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference key="1">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain>DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="1">This is one of the proteins that binds to the 5S RNA in the ribosome where it forms part of the central protuberance.</text>
    </comment>
    <comment type="subunit">
        <text evidence="1">Part of the 50S ribosomal subunit; part of the 5S rRNA/L5/L18/L25 subcomplex. Contacts the 5S rRNA. Binds to the 5S rRNA independently of L5 and L18.</text>
    </comment>
    <comment type="similarity">
        <text evidence="1">Belongs to the bacterial ribosomal protein bL25 family. CTC subfamily.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX38063.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012207232.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A9BP18"/>
    <dbReference type="SMR" id="A9BP18"/>
    <dbReference type="STRING" id="398578.Daci_5434"/>
    <dbReference type="PRIDE" id="A9BP18"/>
    <dbReference type="EnsemblBacteria" id="ABX38063">
        <property type="protein sequence ID" value="ABX38063"/>
        <property type="gene ID" value="Daci_5434"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_5434"/>
    <dbReference type="eggNOG" id="COG1825">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_075939_0_1_4"/>
    <dbReference type="OMA" id="HVDFYEV"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005840">
        <property type="term" value="C:ribosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008097">
        <property type="term" value="F:5S rRNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003735">
        <property type="term" value="F:structural constituent of ribosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006412">
        <property type="term" value="P:translation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd00495">
        <property type="entry name" value="Ribosomal_L25_TL5_CTC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.170.120.20">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.240.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01336">
        <property type="entry name" value="Ribosomal_L25"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01334">
        <property type="entry name" value="Ribosomal_L25_CTC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020056">
        <property type="entry name" value="Rbsml_L25/Gln-tRNA_synth_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029751">
        <property type="entry name" value="Ribosomal_L25"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011035">
        <property type="entry name" value="Ribosomal_L25/Gln-tRNA_synth"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020057">
        <property type="entry name" value="Ribosomal_L25_b-dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037121">
        <property type="entry name" value="Ribosomal_L25_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001021">
        <property type="entry name" value="Ribosomal_L25_long"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020055">
        <property type="entry name" value="Ribosomal_L25_short"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01386">
        <property type="entry name" value="Ribosomal_L25p"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF14693">
        <property type="entry name" value="Ribosomal_TL5_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50715">
        <property type="entry name" value="SSF50715"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00731">
        <property type="entry name" value="bL25_bact_ctc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword id="KW-1185">Reference proteome</keyword>
    <keyword id="KW-0687">Ribonucleoprotein</keyword>
    <keyword id="KW-0689">Ribosomal protein</keyword>
    <keyword id="KW-0694">RNA-binding</keyword>
    <keyword id="KW-0699">rRNA-binding</keyword>
    <feature type="chain" id="PRO_1000142513" description="50S ribosomal protein L25">
        <location>
            <begin position="1"/>
            <end position="209"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="190"/>
            <end position="209"/>
        </location>
    </feature>
    <evidence type="ECO:0000255" key="1">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01334"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <sequence length="209" mass="22636" checksum="A37732BFAEE28453" modified="2008-01-15" version="1">MQFVAFERAKQGTGASRRLRNSGKAPGIVYGGAAEAQLIEIDHNALWHALKKEVFHSSILDMEVNGQTSKVVLRDVQFHPYKQLILHVDFQRVDDKTKVHLKVPLHFEGMEQSQAVKVENCTITPLVHELDVVCMPAQLPEFITVDLSGLTSKSTLGLQGLKLPNGVKAVVRGSNKNPALISIKLPEVAPDASAAPVAAPAAPAKKGKK</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="51" xmlns="http://uniprot.org/uniprot">
    <accession>A9BP40</accession>
    <name>A9BP40_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_5456</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX38085.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012207254.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_5456"/>
    <dbReference type="PRIDE" id="A9BP40"/>
    <dbReference type="EnsemblBacteria" id="ABX38085">
        <property type="protein sequence ID" value="ABX38085"/>
        <property type="gene ID" value="Daci_5456"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_5456"/>
    <dbReference type="eggNOG" id="COG1361">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_408676_0_0_4"/>
    <dbReference type="OMA" id="FANCSIA"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.40.10">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013783">
        <property type="entry name" value="Ig-like_fold"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="647"/>
            <end position="665"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX38085.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="672" mass="67841" checksum="913FE25C7996360C" modified="2008-01-15" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="65" xmlns="http://uniprot.org/uniprot">
    <accession>A9BP53</accession>
    <name>A9BP53_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Glycerophosphodiester phosphodiesterase</fullName>
            <ecNumber evidence="2">3.1.4.46</ecNumber>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_5469</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EC" id="3.1.4.46" evidence="2"/>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX38098.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012207267.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_5469"/>
    <dbReference type="PRIDE" id="A9BP53"/>
    <dbReference type="EnsemblBacteria" id="ABX38098">
        <property type="protein sequence ID" value="ABX38098"/>
        <property type="gene ID" value="Daci_5469"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_5469"/>
    <dbReference type="eggNOG" id="COG0584">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_030006_3_2_4"/>
    <dbReference type="OMA" id="YRMFECD"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008889">
        <property type="term" value="F:glycerophosphodiester phosphodiesterase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006629">
        <property type="term" value="P:lipid metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.20.20.190">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR030395">
        <property type="entry name" value="GP_PDE_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017946">
        <property type="entry name" value="PLC-like_Pdiesterase_TIM-brl"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03009">
        <property type="entry name" value="GDPD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51695">
        <property type="entry name" value="SSF51695"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51704">
        <property type="entry name" value="GP_PDE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="GP-PDE" evidence="1">
        <location>
            <begin position="11"/>
            <end position="253"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS51704"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX38098.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="254" mass="27553" checksum="A5146052AA2658A5" modified="2008-01-15" version="1">MTENLKSWPYPLWVAHRGAGKLAPENTMAAFRLGAAHGYRMFECDAKLSADGVLFLMHDATLERTTNGHGTGGDLSMGEIAQLDAGSWHSRAFAGEALPTLEALARWCLANHFFLNVEIKPTPGQEEATGRATGELMNRIWPRDRIQPLFTSFKTDALKGARDTAPHIPRGLLVDKLADATGDADLRTALDLGCAAMVLNHALWDAALVAKVHGAGLRCSSYTVNDEWAAQRLIDLGTDGVITDRVDMFSPASR</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="65" xmlns="http://uniprot.org/uniprot">
    <accession>A9BPN1</accession>
    <name>A9BPN1_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">Cell shape-determining protein MreB</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="primary">mreB</name>
        <name evidence="3" type="ordered locus">Daci_0354</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="4" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="2">Forms membrane-associated dynamic filaments that are essential for cell shape determination. Acts by regulating cell wall synthesis and cell elongation, and thus cell shape. A feedback loop between cell geometry and MreB localization may maintain elongated cell shape by targeting cell wall growth to regions of negative cell wall curvature.</text>
    </comment>
    <comment type="subunit">
        <text evidence="2">Forms polymers.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="2">Cytoplasm</location>
        </subcellularLocation>
        <text evidence="2">Membrane-associated.</text>
    </comment>
    <comment type="similarity">
        <text evidence="1 2">Belongs to the FtsA/MreB family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX33000.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012202293.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_0354"/>
    <dbReference type="PRIDE" id="A9BPN1"/>
    <dbReference type="EnsemblBacteria" id="ABX33000">
        <property type="protein sequence ID" value="ABX33000"/>
        <property type="gene ID" value="Daci_0354"/>
    </dbReference>
    <dbReference type="GeneID" id="60690759"/>
    <dbReference type="KEGG" id="dac:Daci_0354"/>
    <dbReference type="eggNOG" id="COG1077">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_052037_0_0_4"/>
    <dbReference type="OMA" id="MVICIPS"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000902">
        <property type="term" value="P:cell morphogenesis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008360">
        <property type="term" value="P:regulation of cell shape"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd10225">
        <property type="entry name" value="MreB_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_02207">
        <property type="entry name" value="MreB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043129">
        <property type="entry name" value="ATPase_NBD"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004753">
        <property type="entry name" value="MreB"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR01652">
        <property type="entry name" value="SHAPEPROTEIN"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53067">
        <property type="entry name" value="SSF53067"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00904">
        <property type="entry name" value="mreB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="2" id="KW-0133">Cell shape</keyword>
    <keyword evidence="2" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="2" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="binding site" evidence="2">
        <location>
            <begin position="19"/>
            <end position="21"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="2">
        <location>
            <begin position="169"/>
            <end position="171"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="2">
        <location>
            <begin position="217"/>
            <end position="220"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="2">
        <location>
            <begin position="297"/>
            <end position="300"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023458"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_02207"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ABX33000.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="347" mass="36744" checksum="72EADBB5471612F9" modified="2008-01-15" version="1">MFGAFRRYFSTDLAIDLGTANTLIFARDKGIVLDEPSVVAIRHEGGPHGKKVIQAVGREAKAMLGKVPGNIEAIRPMKDGVIADFVITEQMIKQFIKMVHPRSVLTPSPRIIICVPCGSTQVERRAIKDAAEAAGATSVYLIEEPMAAGIGAGLPVSEASGSMVVDIGGGTTEVGVISLGGMVYKGSVRVGGDKFDEAIISYIRRNYGMLIGEPTAESIKKNIGSAFPGSEVKEMEVKGRNLSEGVPRSFTISSNEVLEALTDPLNQIVSAVKNALEQTPPELGADIAERGMMLTGGGALLRDLDRLLAEETGLPVLVAEEPLTCVVRGCGMALETMDRQGSIFTSD</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="72" xmlns="http://uniprot.org/uniprot">
    <accession>A9BQ60</accession>
    <name>A9BQ60_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="4">Flagellar basal body protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="7" type="ordered locus">Daci_0629</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="8" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1 4">Bacterial flagellum basal body</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2 4">Belongs to the flagella basal body rod proteins family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX33275.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012202561.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_0629"/>
    <dbReference type="PRIDE" id="A9BQ60"/>
    <dbReference type="EnsemblBacteria" id="ABX33275">
        <property type="protein sequence ID" value="ABX33275"/>
        <property type="gene ID" value="Daci_0629"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_0629"/>
    <dbReference type="eggNOG" id="COG4787">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_013687_1_0_4"/>
    <dbReference type="OMA" id="NLYFAIQ"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009425">
        <property type="term" value="C:bacterial-type flagellum basal body"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001444">
        <property type="entry name" value="Flag_bb_rod_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020013">
        <property type="entry name" value="Flagellar_FlgE/F/G"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010930">
        <property type="entry name" value="Flg_bb/hook_C_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037925">
        <property type="entry name" value="FlgE/F/G-like"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00460">
        <property type="entry name" value="Flg_bb_rod"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF06429">
        <property type="entry name" value="Flg_bbr_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF117143">
        <property type="entry name" value="SSF117143"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR03506">
        <property type="entry name" value="FlgEFG_subfam"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3 4" id="KW-0975">Bacterial flagellum</keyword>
    <keyword evidence="7" id="KW-0966">Cell projection</keyword>
    <keyword evidence="7" id="KW-0969">Cilium</keyword>
    <keyword evidence="7" id="KW-0282">Flagellum</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Flg_bb_rod" evidence="5">
        <location>
            <begin position="5"/>
            <end position="35"/>
        </location>
    </feature>
    <feature type="domain" description="Flg_bbr_C" evidence="6">
        <location>
            <begin position="170"/>
            <end position="241"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004117"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00009677"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023143"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="RuleBase" id="RU362116"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="Pfam" id="PF00460"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="Pfam" id="PF06429"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="ABX33275.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="246" mass="25603" checksum="F418E1442A743521" modified="2008-01-15" version="1">MDRIIYTSMTGANAAAQRQSVLAHNLANAGTNGFRAEMSTFRSVPLQGSGAGTRVFALEATSGYVDTPGPTQRTGRALDAMAMGRAWFAVQGLDGQEAYTRNGVFEVSPEGQLVNSNGQAVLSDGGGPIDIPPESTITLGSDGTLTAKTGNQLPVAVGRVKLATPPEDTALVRGNDGLFRTGDGDPLPNDENARLLSGAIEGSNVNSVETMVGMIAAARQFETQMRLLQTAETNDKTASQLLSMNG</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="68" xmlns="http://uniprot.org/uniprot">
    <accession>A9BQC5</accession>
    <name>A9BQC5_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="5">Glutathione peroxidase</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="6" type="ordered locus">Daci_0889</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="7" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1 5">Belongs to the glutathione peroxidase family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX33535.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012202821.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_0889"/>
    <dbReference type="PRIDE" id="A9BQC5"/>
    <dbReference type="EnsemblBacteria" id="ABX33535">
        <property type="protein sequence ID" value="ABX33535"/>
        <property type="gene ID" value="Daci_0889"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_0889"/>
    <dbReference type="eggNOG" id="COG0386">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_029507_2_2_4"/>
    <dbReference type="OMA" id="FPMMSKI"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004602">
        <property type="term" value="F:glutathione peroxidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006979">
        <property type="term" value="P:response to oxidative stress"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd00340">
        <property type="entry name" value="GSH_Peroxidase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000889">
        <property type="entry name" value="Glutathione_peroxidase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029759">
        <property type="entry name" value="GPX_AS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029760">
        <property type="entry name" value="GPX_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036249">
        <property type="entry name" value="Thioredoxin-like_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11592">
        <property type="entry name" value="PTHR11592"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00255">
        <property type="entry name" value="GSHPx"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF000303">
        <property type="entry name" value="Glutathion_perox"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR01011">
        <property type="entry name" value="GLUTPROXDASE"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52833">
        <property type="entry name" value="SSF52833"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00460">
        <property type="entry name" value="GLUTATHIONE_PEROXID_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00763">
        <property type="entry name" value="GLUTATHIONE_PEROXID_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51355">
        <property type="entry name" value="GLUTATHIONE_PEROXID_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3 5 6" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="2 5 6" id="KW-0575">Peroxidase</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <feature type="active site" evidence="4">
        <location>
            <position position="43"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00006926"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022559"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023002"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="PIRSR" id="PIRSR000303-1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="RuleBase" id="RU000499"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="ABX33535.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="168" mass="18135" checksum="C46F50BB0884C802" modified="2008-01-15" version="1">MNDTAAAPRSAYDFEATSITGQAVPLSDYRGKVLLIVNTASACGFTPQYAGLQALHEQYGERGLVMLGFPCNQFGSQEKGSESEIASFCDLNFGVRFPLMGKIDVNGANAHPLYRWLTAEAPGVLGTKAIKWNFTKFLVGRDGQVIRRYAPQDAPAKLSTDIEAALAL</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="38" xmlns="http://uniprot.org/uniprot">
    <accession>A9BQF6</accession>
    <name>A9BQF6_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Daci_0920</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="2" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX33566.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012202852.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="PRIDE" id="A9BQF6"/>
    <dbReference type="EnsemblBacteria" id="ABX33566">
        <property type="protein sequence ID" value="ABX33566"/>
        <property type="gene ID" value="Daci_0920"/>
    </dbReference>
    <dbReference type="GeneID" id="60685483"/>
    <dbReference type="KEGG" id="dac:Daci_0920"/>
    <dbReference type="eggNOG" id="ENOG50345VP">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_2394678_0_0_4"/>
    <dbReference type="OMA" id="IMMADDS"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ABX33566.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="98" mass="10737" checksum="07DF5719EEAD6265" modified="2008-01-15" version="1">MNTSVQTQAEAAEEAVQSAVEVQRFPEKFEATVTGNVQHRVGDGPLEDIPRGTRVQVATAIGSYVLSWTQDEQPITVSLAKREFELYVDTGEIEVSQA</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="89" xmlns="http://uniprot.org/uniprot">
    <accession>A9BQG9</accession>
    <name>A9BQG9_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Two component transcriptional regulator, winged helix family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ordered locus">Daci_0933</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="6" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX33579.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_0933"/>
    <dbReference type="PRIDE" id="A9BQG9"/>
    <dbReference type="EnsemblBacteria" id="ABX33579">
        <property type="protein sequence ID" value="ABX33579"/>
        <property type="gene ID" value="Daci_0933"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_0933"/>
    <dbReference type="eggNOG" id="COG0745">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_000445_30_1_4"/>
    <dbReference type="OMA" id="EFNILHF"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000160">
        <property type="term" value="P:phosphorelay signal transduction system"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006355">
        <property type="term" value="P:regulation of transcription, DNA-templated"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd00383">
        <property type="entry name" value="trans_reg_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011006">
        <property type="entry name" value="CheY-like_superfamily"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001867">
        <property type="entry name" value="OmpR/PhoB-type_DNA-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001789">
        <property type="entry name" value="Sig_transdc_resp-reg_receiver"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR039420">
        <property type="entry name" value="WalR-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR48111">
        <property type="entry name" value="PTHR48111"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00072">
        <property type="entry name" value="Response_reg"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00486">
        <property type="entry name" value="Trans_reg_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00448">
        <property type="entry name" value="REC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00862">
        <property type="entry name" value="Trans_reg_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52172">
        <property type="entry name" value="SSF52172"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51755">
        <property type="entry name" value="OMPR_PHOB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50110">
        <property type="entry name" value="RESPONSE_REGULATORY"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="1" id="KW-0597">Phosphoprotein</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Response regulatory" evidence="3">
        <location>
            <begin position="23"/>
            <end position="148"/>
        </location>
    </feature>
    <feature type="domain" description="OmpR/PhoB-type" evidence="4">
        <location>
            <begin position="156"/>
            <end position="250"/>
        </location>
    </feature>
    <feature type="DNA-binding region" description="OmpR/PhoB-type" evidence="2">
        <location>
            <begin position="156"/>
            <end position="250"/>
        </location>
    </feature>
    <feature type="modified residue" description="4-aspartylphosphate" evidence="1">
        <location>
            <position position="72"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00169"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU01091"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="PROSITE" id="PS50110"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="PROSITE" id="PS51755"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="ABX33579.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="253" mass="28407" checksum="9AF43D69537F5D73" modified="2008-01-15" version="1">MPRRAAIVWRRSRQRSLHNARMRILVVEDNAGIAAGLQANLEQRRYAVDVCTTVAEAWHALEMERFDAVLLDLGLPDGDGSEILRRLRGPRRPGGDSQALPDPNTPVLILTARDQVRERIAGLDLGADDYLVKPFDIDELEARLRAMLRRAGGQAAPVIRHGELEVDPAARTVRRDGKLVEMSPREFSVLWVLLQARGRVLSRQQIEEHLYSWGTAVESNAVEVHIHHLRKKLGNASIVTMRGVGYFLPVENT</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="83" xmlns="http://uniprot.org/uniprot">
    <accession>A9BQQ8</accession>
    <name>A9BQQ8_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="9">Phosphoenolpyruvate carboxykinase [GTP]</fullName>
            <shortName evidence="9">PEP carboxykinase</shortName>
            <shortName evidence="9">PEPCK</shortName>
            <ecNumber evidence="9">4.1.1.32</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="9">GTP-dependent phosphoenolpyruvate carboxykinase</fullName>
            <shortName evidence="9">GTP-PEPCK</shortName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="9" type="primary">pckG</name>
        <name evidence="12" type="ordered locus">Daci_0114</name>
    </gene>
    <organism evidence="12 13">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="12 13" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="13">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="13" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="13">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="9">Catalyzes the conversion of oxaloacetate (OAA) to phosphoenolpyruvate (PEP), the rate-limiting step in the metabolic pathway that produces glucose from lactate and other precursors derived from the citric acid cycle.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="9">
            <text>GTP + oxaloacetate = CO2 + GDP + phosphoenolpyruvate</text>
            <dbReference type="Rhea" id="RHEA:10388"/>
            <dbReference type="ChEBI" id="CHEBI:16452"/>
            <dbReference type="ChEBI" id="CHEBI:16526"/>
            <dbReference type="ChEBI" id="CHEBI:37565"/>
            <dbReference type="ChEBI" id="CHEBI:58189"/>
            <dbReference type="ChEBI" id="CHEBI:58702"/>
            <dbReference type="EC" id="4.1.1.32"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="9">
            <name>Mn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29035"/>
        </cofactor>
        <text evidence="9">Binds 1 Mn(2+) ion per subunit.</text>
    </comment>
    <comment type="pathway">
        <text evidence="9">Carbohydrate biosynthesis; gluconeogenesis.</text>
    </comment>
    <comment type="subunit">
        <text evidence="9">Monomer.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="9">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="1 9">Belongs to the phosphoenolpyruvate carboxykinase [GTP] family.</text>
    </comment>
    <dbReference type="EC" id="4.1.1.32" evidence="9"/>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX32760.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012202053.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_0114"/>
    <dbReference type="PRIDE" id="A9BQQ8"/>
    <dbReference type="EnsemblBacteria" id="ABX32760">
        <property type="protein sequence ID" value="ABX32760"/>
        <property type="gene ID" value="Daci_0114"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_0114"/>
    <dbReference type="eggNOG" id="COG1274">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_028872_1_1_4"/>
    <dbReference type="OMA" id="GPTNNWV"/>
    <dbReference type="UniPathway" id="UPA00138"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005525">
        <property type="term" value="F:GTP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016301">
        <property type="term" value="F:kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030145">
        <property type="term" value="F:manganese ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004613">
        <property type="term" value="F:phosphoenolpyruvate carboxykinase (GTP) activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006094">
        <property type="term" value="P:gluconeogenesis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016310">
        <property type="term" value="P:phosphorylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd00819">
        <property type="entry name" value="PEPCK_GTP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.449.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.228.20">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00452">
        <property type="entry name" value="PEPCK_GTP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018091">
        <property type="entry name" value="PEP_carboxykin_GTP_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013035">
        <property type="entry name" value="PEP_carboxykinase_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008209">
        <property type="entry name" value="PEP_carboxykinase_GTP"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035077">
        <property type="entry name" value="PEP_carboxykinase_GTP_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035078">
        <property type="entry name" value="PEP_carboxykinase_GTP_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008210">
        <property type="entry name" value="PEP_carboxykinase_N"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11561">
        <property type="entry name" value="PTHR11561"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00821">
        <property type="entry name" value="PEPCK_GTP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF17297">
        <property type="entry name" value="PEPCK_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF001348">
        <property type="entry name" value="PEP_carboxykinase_GTP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF68923">
        <property type="entry name" value="SSF68923"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00505">
        <property type="entry name" value="PEPCK_GTP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="9" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="5 9" id="KW-0210">Decarboxylase</keyword>
    <keyword evidence="2 9" id="KW-0312">Gluconeogenesis</keyword>
    <keyword evidence="6 9" id="KW-0342">GTP-binding</keyword>
    <keyword evidence="12" id="KW-0418">Kinase</keyword>
    <keyword evidence="8 9 12" id="KW-0456">Lyase</keyword>
    <keyword evidence="7 9" id="KW-0464">Manganese</keyword>
    <keyword evidence="3 9" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="4 9" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="12" id="KW-0670">Pyruvate</keyword>
    <keyword evidence="13" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="12" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="PEPCK_N" evidence="11">
        <location>
            <begin position="25"/>
            <end position="245"/>
        </location>
    </feature>
    <feature type="domain" description="PEPCK_GTP" evidence="10">
        <location>
            <begin position="249"/>
            <end position="618"/>
        </location>
    </feature>
    <feature type="region of interest" description="Substrate binding" evidence="9">
        <location>
            <begin position="224"/>
            <end position="226"/>
        </location>
    </feature>
    <feature type="region of interest" description="Substrate binding" evidence="9">
        <location>
            <begin position="399"/>
            <end position="401"/>
        </location>
    </feature>
    <feature type="active site" evidence="9">
        <location>
            <position position="277"/>
        </location>
    </feature>
    <feature type="binding site" evidence="9">
        <location>
            <position position="84"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="9">
        <location>
            <position position="233"/>
        </location>
        <ligand>
            <name>Mn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29035"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="9">
        <location>
            <position position="253"/>
        </location>
        <ligand>
            <name>Mn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29035"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="9">
        <location>
            <position position="275"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="9">
        <location>
            <begin position="276"/>
            <end position="281"/>
        </location>
        <ligand>
            <name>GTP</name>
            <dbReference type="ChEBI" id="CHEBI:37565"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="9">
        <location>
            <position position="302"/>
        </location>
        <ligand>
            <name>Mn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29035"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="9">
        <location>
            <position position="401"/>
        </location>
        <ligand>
            <name>GTP</name>
            <dbReference type="ChEBI" id="CHEBI:37565"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="9">
        <location>
            <position position="432"/>
        </location>
        <ligand>
            <name>GTP</name>
            <dbReference type="ChEBI" id="CHEBI:37565"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="9">
        <location>
            <begin position="529"/>
            <end position="532"/>
        </location>
        <ligand>
            <name>GTP</name>
            <dbReference type="ChEBI" id="CHEBI:37565"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00005796"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022432"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022793"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023134"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023211"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00023239"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00452"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="10">
        <source>
            <dbReference type="Pfam" id="PF00821"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="11">
        <source>
            <dbReference type="Pfam" id="PF17297"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="EMBL" id="ABX32760.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="13">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="621" mass="68432" checksum="5EFD38F3050F6A3B" modified="2008-01-15" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="65" xmlns="http://uniprot.org/uniprot">
    <accession>A9BQT7</accession>
    <name>A9BQT7_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="1">L-carnitine dehydratase/bile acid-inducible protein F</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Daci_0143</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="2" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX32789.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012202082.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_0143"/>
    <dbReference type="PRIDE" id="A9BQT7"/>
    <dbReference type="EnsemblBacteria" id="ABX32789">
        <property type="protein sequence ID" value="ABX32789"/>
        <property type="gene ID" value="Daci_0143"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_0143"/>
    <dbReference type="eggNOG" id="COG1804">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_033975_0_0_4"/>
    <dbReference type="OMA" id="VAMFDSM"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003824">
        <property type="term" value="F:catalytic activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.1540.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.10540">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003673">
        <property type="entry name" value="CoA-Trfase_fam_III"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR044855">
        <property type="entry name" value="CoA-Trfase_III_dom3_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023606">
        <property type="entry name" value="CoA-Trfase_III_dom_1_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02515">
        <property type="entry name" value="CoA_transf_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF89796">
        <property type="entry name" value="SSF89796"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ABX32789.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="413" mass="43034" checksum="941078661B052832" modified="2008-01-15" version="1">MTKSSPLTARPLDGVRILDFTRVLAGPLSTALLADLGAEVVKIEPPQGDDYRAIGPMNNGESALFTVMNRNKQSLVLDLKHPEAVALVHEMAAQADVVVENFRPGVAERLGIGASQLRALNPRLVYVSVSGFGQTGPLAHRPAYDIIVQAMSGLMEATGEPDGAPTVVGEAVSDVVAGLFASWATLAALLQARATGQGQQVDVAMFDTTLSFLATSVARYLFTGRPARRVGNRHPLSAPFGVYRAGDGHFALAVLNNKLFAAALQAMELGSLAGDPRFASDESRSAHEPALREAIEAWAGRHEVAQVVAALDAAGVPAAPIWNIAQALESPQSQARGLLGAVQDPRLPGLRLPTQPVHFSGAAPNRAERAPALGEHTDALLSQWLGRGAEAIAALRASGALGTAAAAPSSPSH</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="73" xmlns="http://uniprot.org/uniprot">
    <accession>A9BQV9</accession>
    <name>A9BQV9_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="4">Ferredoxin--NADP(+) reductase</fullName>
            <ecNumber evidence="4">1.18.1.2</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="7" type="ordered locus">Daci_0268</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="8" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>H(+) + NADP(+) + 2 reduced [2Fe-2S]-[ferredoxin] = NADPH + 2 oxidized [2Fe-2S]-[ferredoxin]</text>
            <dbReference type="Rhea" id="RHEA:20125"/>
            <dbReference type="Rhea" id="RHEA-COMP:10000"/>
            <dbReference type="Rhea" id="RHEA-COMP:10001"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:33737"/>
            <dbReference type="ChEBI" id="CHEBI:33738"/>
            <dbReference type="ChEBI" id="CHEBI:57783"/>
            <dbReference type="ChEBI" id="CHEBI:58349"/>
            <dbReference type="EC" id="1.18.1.2"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="2">
            <name>FAD</name>
            <dbReference type="ChEBI" id="CHEBI:57692"/>
        </cofactor>
    </comment>
    <comment type="similarity">
        <text evidence="3">Belongs to the ferredoxin--NADP reductase type 1 family.</text>
    </comment>
    <dbReference type="EC" id="1.18.1.2" evidence="4"/>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX32914.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012202207.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_0268"/>
    <dbReference type="PRIDE" id="A9BQV9"/>
    <dbReference type="EnsemblBacteria" id="ABX32914">
        <property type="protein sequence ID" value="ABX32914"/>
        <property type="gene ID" value="Daci_0268"/>
    </dbReference>
    <dbReference type="GeneID" id="60690674"/>
    <dbReference type="KEGG" id="dac:Daci_0268"/>
    <dbReference type="eggNOG" id="COG0543">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_003827_3_0_4"/>
    <dbReference type="OMA" id="MICGSSA"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004324">
        <property type="term" value="F:ferredoxin-NADP+ reductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000166">
        <property type="term" value="F:nucleotide binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd06195">
        <property type="entry name" value="FNR1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.80">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008333">
        <property type="entry name" value="Cbr1-like_FAD-bd_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017927">
        <property type="entry name" value="FAD-bd_FR_type"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR033892">
        <property type="entry name" value="FNR_bac"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR039261">
        <property type="entry name" value="FNR_nucleotide-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001433">
        <property type="entry name" value="OxRdtase_FAD/NAD-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017938">
        <property type="entry name" value="Riboflavin_synthase-like_b-brl"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00970">
        <property type="entry name" value="FAD_binding_6"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00175">
        <property type="entry name" value="NAD_binding_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52343">
        <property type="entry name" value="SSF52343"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF63380">
        <property type="entry name" value="SSF63380"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51384">
        <property type="entry name" value="FAD_FR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="FAD-binding FR-type" evidence="6">
        <location>
            <begin position="2"/>
            <end position="102"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001005"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00001974"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00008312"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00013223"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="PROSITE" id="PS51384"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="ABX32914.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="257" mass="29061" checksum="53D8846AD44B336F" modified="2008-01-15" version="1">MSAFLEERVLSVHHWTDRLFSFTTTRDTALRFSNGHFTMIGLKVDGKNLLRAYSIASPNYEEHLEFLSIKVPDGPLTSRLQNIQVGDTILVGKKPTGTLLIDYLLPGKNLYLIGTGTGLAPWLAVARDPETYERYEKVVVVHGVRHASELAYQELFEKELPEHEFLGEIVKDKLVYYPTVTREPFRNQGRISNQITAGTFPQNIGLPELNPETDRVMLCGSPAMLNELKELLEHRGFKEGNTTTPGDFVVERAFVEK</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="76" xmlns="http://uniprot.org/uniprot">
    <accession>A9BQX2</accession>
    <name>A9BQX2_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Transcriptional regulator, LysR family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Daci_0281</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="4" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the LysR transcriptional regulatory family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX32927.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012202220.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_0281"/>
    <dbReference type="PRIDE" id="A9BQX2"/>
    <dbReference type="EnsemblBacteria" id="ABX32927">
        <property type="protein sequence ID" value="ABX32927"/>
        <property type="gene ID" value="Daci_0281"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_0281"/>
    <dbReference type="eggNOG" id="COG0583">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_039613_6_1_4"/>
    <dbReference type="OMA" id="MEIESYQ"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003700">
        <property type="term" value="F:DNA-binding transcription factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005119">
        <property type="entry name" value="LysR_subst-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000847">
        <property type="entry name" value="Tscrpt_reg_HTH_LysR"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036390">
        <property type="entry name" value="WH_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00126">
        <property type="entry name" value="HTH_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03466">
        <property type="entry name" value="LysR_substrate"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00039">
        <property type="entry name" value="HTHLYSR"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46785">
        <property type="entry name" value="SSF46785"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50931">
        <property type="entry name" value="HTH_LYSR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HTH lysR-type" evidence="2">
        <location>
            <begin position="1"/>
            <end position="57"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00009437"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS50931"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ABX32927.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="307" mass="32767" checksum="BC4BD72601859C73" modified="2008-01-15" version="1">MQLKSLRMFLAVCDSGSFGAAAQQLHTVQSNVTAHVKKLEDEAGVQLLERSAPVHATPAGRLLEQYARRMLADHDEALALLQGSSRAAGALRIGSMETTAALRLPPLLARLHQAQPGLDLELRTATTAELLADLLAGRLDCAFVSGMPPQSRLQGWRVFEEELVLVTAFALPRFPDAAQLSAVPFLAFRQGCSYRQRIELLLAARGVAARIMEMGSLDAILGCVAAGMGYGLLPRSVVQAQQHRFGVHITALPGALAQEVARVETWFVVPARQGWSPALHACVEVLGIEGVQGEEALGMEAVPAASA</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="81" xmlns="http://uniprot.org/uniprot">
    <accession>A9BR07</accession>
    <name>A9BR07_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="17">Branched-chain-amino-acid aminotransferase</fullName>
            <shortName evidence="17">BCAT</shortName>
            <ecNumber evidence="17">2.6.1.42</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="17" type="primary">ilvE</name>
        <name evidence="18" type="ordered locus">Daci_0316</name>
    </gene>
    <organism evidence="18 19">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="18 19" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="19">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="19" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="19">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="5 17">Acts on leucine, isoleucine and valine.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>2-oxoglutarate + L-isoleucine = (S)-3-methyl-2-oxopentanoate + L-glutamate</text>
            <dbReference type="Rhea" id="RHEA:24801"/>
            <dbReference type="ChEBI" id="CHEBI:16810"/>
            <dbReference type="ChEBI" id="CHEBI:29985"/>
            <dbReference type="ChEBI" id="CHEBI:35146"/>
            <dbReference type="ChEBI" id="CHEBI:58045"/>
            <dbReference type="EC" id="2.6.1.42"/>
        </reaction>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="2">
            <text>2-oxoglutarate + L-leucine = 4-methyl-2-oxopentanoate + L-glutamate</text>
            <dbReference type="Rhea" id="RHEA:18321"/>
            <dbReference type="ChEBI" id="CHEBI:16810"/>
            <dbReference type="ChEBI" id="CHEBI:17865"/>
            <dbReference type="ChEBI" id="CHEBI:29985"/>
            <dbReference type="ChEBI" id="CHEBI:57427"/>
            <dbReference type="EC" id="2.6.1.42"/>
        </reaction>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="3">
            <text>2-oxoglutarate + L-valine = 3-methyl-2-oxobutanoate + L-glutamate</text>
            <dbReference type="Rhea" id="RHEA:24813"/>
            <dbReference type="ChEBI" id="CHEBI:11851"/>
            <dbReference type="ChEBI" id="CHEBI:16810"/>
            <dbReference type="ChEBI" id="CHEBI:29985"/>
            <dbReference type="ChEBI" id="CHEBI:57762"/>
            <dbReference type="EC" id="2.6.1.42"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="4 16">
            <name>pyridoxal 5'-phosphate</name>
            <dbReference type="ChEBI" id="CHEBI:597326"/>
        </cofactor>
    </comment>
    <comment type="pathway">
        <text evidence="6 17">Amino-acid biosynthesis; L-isoleucine biosynthesis; L-isoleucine from 2-oxobutanoate: step 4/4.</text>
    </comment>
    <comment type="pathway">
        <text evidence="8 17">Amino-acid biosynthesis; L-leucine biosynthesis; L-leucine from 3-methyl-2-oxobutanoate: step 4/4.</text>
    </comment>
    <comment type="pathway">
        <text evidence="7 17">Amino-acid biosynthesis; L-valine biosynthesis; L-valine from pyruvate: step 4/4.</text>
    </comment>
    <comment type="similarity">
        <text evidence="9 15">Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family.</text>
    </comment>
    <dbReference type="EC" id="2.6.1.42" evidence="17"/>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX32962.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012202255.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_0316"/>
    <dbReference type="PRIDE" id="A9BR07"/>
    <dbReference type="EnsemblBacteria" id="ABX32962">
        <property type="protein sequence ID" value="ABX32962"/>
        <property type="gene ID" value="Daci_0316"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_0316"/>
    <dbReference type="eggNOG" id="COG0115">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_020844_3_1_4"/>
    <dbReference type="OMA" id="LTEVFAC"/>
    <dbReference type="UniPathway" id="UPA00047">
        <property type="reaction ID" value="UER00058"/>
    </dbReference>
    <dbReference type="UniPathway" id="UPA00048">
        <property type="reaction ID" value="UER00073"/>
    </dbReference>
    <dbReference type="UniPathway" id="UPA00049">
        <property type="reaction ID" value="UER00062"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0052656">
        <property type="term" value="F:L-isoleucine transaminase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0052654">
        <property type="term" value="F:L-leucine transaminase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0050048">
        <property type="term" value="F:L-leucine:2-oxoglutarate aminotransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="RHEA"/>
    </dbReference>
    <dbReference type="GO" id="GO:0052655">
        <property type="term" value="F:L-valine transaminase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009097">
        <property type="term" value="P:isoleucine biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniPathway"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009098">
        <property type="term" value="P:leucine biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniPathway"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009099">
        <property type="term" value="P:valine biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniPathway"/>
    </dbReference>
    <dbReference type="CDD" id="cd01557">
        <property type="entry name" value="BCAT_beta_family"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.20.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.470.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001544">
        <property type="entry name" value="Aminotrans_IV"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018300">
        <property type="entry name" value="Aminotrans_IV_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036038">
        <property type="entry name" value="Aminotransferase-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005785">
        <property type="entry name" value="B_amino_transI"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043132">
        <property type="entry name" value="BCAT-like_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043131">
        <property type="entry name" value="BCAT-like_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR033939">
        <property type="entry name" value="BCAT_family"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01063">
        <property type="entry name" value="Aminotran_4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56752">
        <property type="entry name" value="SSF56752"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01122">
        <property type="entry name" value="ilvE_I"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00770">
        <property type="entry name" value="AA_TRANSFER_CLASS_4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="11 17" id="KW-0028">Amino-acid biosynthesis</keyword>
    <keyword evidence="10 17 18" id="KW-0032">Aminotransferase</keyword>
    <keyword evidence="14 17" id="KW-0100">Branched-chain amino acid biosynthesis</keyword>
    <keyword evidence="13 16" id="KW-0663">Pyridoxal phosphate</keyword>
    <keyword evidence="19" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="12 17 18" id="KW-0808">Transferase</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00000627"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00000995"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00001745"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00001933"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00003109"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00004824"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00004931"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00005072"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00009320"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00022576"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="ARBA" id="ARBA00022605"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="12">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="13">
        <source>
            <dbReference type="ARBA" id="ARBA00022898"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="14">
        <source>
            <dbReference type="ARBA" id="ARBA00023304"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="15">
        <source>
            <dbReference type="RuleBase" id="RU004106"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="16">
        <source>
            <dbReference type="RuleBase" id="RU004516"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="17">
        <source>
            <dbReference type="RuleBase" id="RU364094"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="18">
        <source>
            <dbReference type="EMBL" id="ABX32962.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="19">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="312" mass="34783" checksum="0E3E3894C7F5F6FE" modified="2008-01-15" version="1">MSPVVPSMADRDGKIWMDGQLVDWRDAKIHVLTHTLHYGCGAFEGVRAYKSEQGTAIFRLEDHTKRLFNSAKILRMQIPFTQEVVNQAQVEVVRANQLESCYLRPLTWIGDRKLGVSPKGNTIHLMVAAWAWGAYLGEEGMQRGIRVKISSFTRHHVNITMSQAKAVSNYTNSILANTEALDDGYDEAILLDASGFVSEGSGENIFVIKDGVVYTPDLSAGALNGITRNTVMHICKDLGLEVVQKRITRDELYIADEVFFTGTAAEVTPIREVDRIEIGAGSRGPLTEKIQQAFFDIVNGRNPKYAHWLTRV</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="75" xmlns="http://uniprot.org/uniprot">
    <accession>A9BR24</accession>
    <name>A9BR24_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Aldehyde Dehydrogenase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ordered locus">Daci_0333</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="5" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX32979.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012202272.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_0333"/>
    <dbReference type="PRIDE" id="A9BR24"/>
    <dbReference type="EnsemblBacteria" id="ABX32979">
        <property type="protein sequence ID" value="ABX32979"/>
        <property type="gene ID" value="Daci_0333"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_0333"/>
    <dbReference type="eggNOG" id="COG1012">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_005391_0_2_4"/>
    <dbReference type="OMA" id="EGGHYSF"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016620">
        <property type="term" value="F:oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.309.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.605.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016161">
        <property type="entry name" value="Ald_DH/histidinol_DH"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016163">
        <property type="entry name" value="Ald_DH_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016160">
        <property type="entry name" value="Ald_DH_CS_CYS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016162">
        <property type="entry name" value="Ald_DH_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015590">
        <property type="entry name" value="Aldehyde_DH_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00171">
        <property type="entry name" value="Aldedh"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53720">
        <property type="entry name" value="SSF53720"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00070">
        <property type="entry name" value="ALDEHYDE_DEHYDR_CYS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Aldedh" evidence="3">
        <location>
            <begin position="15"/>
            <end position="474"/>
        </location>
    </feature>
    <feature type="active site" evidence="2">
        <location>
            <position position="281"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023002"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU10008"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF00171"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="ABX32979.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="485" mass="51240" checksum="C99B875F093F4FDD" modified="2008-01-15" version="1">MSTQEHLQFYIDGQWVPPAVPRTLDVINPSTEEVAARISMGSAADVDAAVAAARRAFDGFSQTTRDERLALLDKVLAVYMRRIDEVAQTISLEMGAPLWLSRAAQATVGAGHLKQTLQVLRDFEFESVRGTTGIVHEPVGVVGMITPWNWPINQIMCKVAPALAAGCTMVLKPSEIAPLNAILVAEILHEAGVPAGVFNLVNGDGPSVGEAMSVHPGIDMMTFTGSTRAGIAVAKASADTVKRVTQELGGKSANIVLDDADIEKAVAQGVNACFTNSGQSCNAPTRMFVPRAMHARAVAAAKAAAEGVKVGDALADTGAMHMGPVVSEAQFRKIQGLIEAGIAEGATLVAGGTGRPEGLARGYFVRPTVFADVRNDMTIAREEIFGPVLVILPYDTEEEAIAQANDTPYGLSGYVQSGSLERARRVASRLRTGMVHLNGAGPDFGAPFGGYKQSGTGREWGEHGFKEYLEVKAVMGYQPKQKAAA</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="67" xmlns="http://uniprot.org/uniprot">
    <accession>A9BR80</accession>
    <name>A9BR80_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Arsenical resistance protein ArsH</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_0492</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX33138.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012202424.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_0492"/>
    <dbReference type="PRIDE" id="A9BR80"/>
    <dbReference type="EnsemblBacteria" id="ABX33138">
        <property type="protein sequence ID" value="ABX33138"/>
        <property type="gene ID" value="Daci_0492"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_0492"/>
    <dbReference type="eggNOG" id="COG0431">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_055322_0_1_4"/>
    <dbReference type="OMA" id="ITEAKFH"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016491">
        <property type="term" value="F:oxidoreductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.360">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014063">
        <property type="entry name" value="Arsenate-R_ArsH"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029039">
        <property type="entry name" value="Flavoprotein-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005025">
        <property type="entry name" value="FMN_Rdtase-like"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43590">
        <property type="entry name" value="PTHR43590"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03358">
        <property type="entry name" value="FMN_red"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52218">
        <property type="entry name" value="SSF52218"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR02690">
        <property type="entry name" value="resist_ArsH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="FMN_red" evidence="1">
        <location>
            <begin position="35"/>
            <end position="177"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF03358"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX33138.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="240" mass="26980" checksum="97670179DA0B485E" modified="2008-01-15" version="1">MSESRIDLPNIDTALFQLPDTQRLLTPERATHAPRFLLLYGSLRERSFSRLAAEEAARILRALGGETRMFNPSGLPLVDDAPADHPKVKELHELAQWAEGMVWSSPERHGAMTGLMKTQIDWIPLSAGAVRPTQGKTLAVMQVSGGSQSFNAVNQMRVLGRWMRMLTIPNQSSVAKAYQEFDEAGRMKPSAYYDRIADVMEELMKFTLLTRDAAPYLVDRYSERKESAEALSRRVQQTAI</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="30" xmlns="http://uniprot.org/uniprot">
    <accession>A9BR81</accession>
    <name>A9BR81_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Daci_0493</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="2" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX33139.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012202425.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_0493"/>
    <dbReference type="PRIDE" id="A9BR81"/>
    <dbReference type="EnsemblBacteria" id="ABX33139">
        <property type="protein sequence ID" value="ABX33139"/>
        <property type="gene ID" value="Daci_0493"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_0493"/>
    <dbReference type="HOGENOM" id="CLU_1802974_0_0_4"/>
    <dbReference type="OMA" id="APQACED"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ABX33139.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="143" mass="16210" checksum="3A05E106FB7CEA92" modified="2008-01-15" version="1">MGISSSKVYKQADEAAAFAHIRELAEKEPVDDETASELWLEAEAIVDTYIEAAESRSIEDLPSRQELGESCFWLLFQTKVLREDEHYRLIVELLSPQLGLSLFDLLPRVRKLREAALDALEAMVKKPSMDRPTAPQACEDDLF</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2021-06-02" version="43" xmlns="http://uniprot.org/uniprot">
    <accession>A9BRA5</accession>
    <name>A9BRA5_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Cupin 2 conserved barrel domain protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_0517</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX33163.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012202449.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_0517"/>
    <dbReference type="EnsemblBacteria" id="ABX33163">
        <property type="protein sequence ID" value="ABX33163"/>
        <property type="gene ID" value="Daci_0517"/>
    </dbReference>
    <dbReference type="GeneID" id="60690860"/>
    <dbReference type="KEGG" id="dac:Daci_0517"/>
    <dbReference type="eggNOG" id="COG1917">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_143539_0_0_4"/>
    <dbReference type="OMA" id="MALEHAK"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.120.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013096">
        <property type="entry name" value="Cupin_2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014710">
        <property type="entry name" value="RmlC-like_jellyroll"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011051">
        <property type="entry name" value="RmlC_Cupin_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07883">
        <property type="entry name" value="Cupin_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51182">
        <property type="entry name" value="SSF51182"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Cupin_2" evidence="1">
        <location>
            <begin position="37"/>
            <end position="103"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF07883"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX33163.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="109" mass="11306" checksum="343174B3BEC295D3" modified="2008-01-15" version="1">MALEHAKPLEVIALHARDGMPISTSLIRTPKLQLLRLVLPPGHALPSHQVPGEATIHCLAGEAGIATRLASLRLVAGSVVLVPAGELHDVHARGDQGCVLLVTIAGAND</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="93" xmlns="http://uniprot.org/uniprot">
    <accession>A9BRE0</accession>
    <name>A9BRE0_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">Histidine kinase</fullName>
            <ecNumber evidence="2">2.7.13.3</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="7" type="ordered locus">Daci_0655</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="8" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>ATP + protein L-histidine = ADP + protein N-phospho-L-histidine.</text>
            <dbReference type="EC" id="2.7.13.3"/>
        </reaction>
    </comment>
    <dbReference type="EC" id="2.7.13.3" evidence="2"/>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX33301.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012202587.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_0655"/>
    <dbReference type="PRIDE" id="A9BRE0"/>
    <dbReference type="EnsemblBacteria" id="ABX33301">
        <property type="protein sequence ID" value="ABX33301"/>
        <property type="gene ID" value="Daci_0655"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_0655"/>
    <dbReference type="eggNOG" id="COG0643">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="eggNOG" id="COG2198">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_000650_3_6_4"/>
    <dbReference type="OMA" id="MMDMAKS"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000155">
        <property type="term" value="F:phosphorelay sensor kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006935">
        <property type="term" value="P:chemotaxis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd00088">
        <property type="entry name" value="HPT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.287.560">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.120.160">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.565.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004105">
        <property type="entry name" value="CheA-like_dim"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037006">
        <property type="entry name" value="CheA-like_homodim_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036061">
        <property type="entry name" value="CheW-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002545">
        <property type="entry name" value="CheW-lke_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003594">
        <property type="entry name" value="HATPase_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036890">
        <property type="entry name" value="HATPase_C_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005467">
        <property type="entry name" value="His_kinase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036097">
        <property type="entry name" value="HisK_dim/P_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036641">
        <property type="entry name" value="HPT_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004358">
        <property type="entry name" value="Sig_transdc_His_kin-like_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008207">
        <property type="entry name" value="Sig_transdc_His_kin_Hpt_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01584">
        <property type="entry name" value="CheW"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02895">
        <property type="entry name" value="H-kinase_dim"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02518">
        <property type="entry name" value="HATPase_c"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01627">
        <property type="entry name" value="Hpt"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00344">
        <property type="entry name" value="BCTRLSENSOR"/>
    </dbReference>
    <dbReference type="SMART" id="SM00260">
        <property type="entry name" value="CheW"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM01231">
        <property type="entry name" value="H-kinase_dim"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00387">
        <property type="entry name" value="HATPase_c"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00073">
        <property type="entry name" value="HPT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47226">
        <property type="entry name" value="SSF47226"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47384">
        <property type="entry name" value="SSF47384"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50341">
        <property type="entry name" value="SSF50341"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55874">
        <property type="entry name" value="SSF55874"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50851">
        <property type="entry name" value="CHEW"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50109">
        <property type="entry name" value="HIS_KIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50894">
        <property type="entry name" value="HPT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="7" id="KW-0418">Kinase</keyword>
    <keyword evidence="3" id="KW-0597">Phosphoprotein</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="7" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="HPt" evidence="6">
        <location>
            <begin position="13"/>
            <end position="117"/>
        </location>
    </feature>
    <feature type="domain" description="Histidine kinase" evidence="4">
        <location>
            <begin position="387"/>
            <end position="595"/>
        </location>
    </feature>
    <feature type="domain" description="CheW-like" evidence="5">
        <location>
            <begin position="597"/>
            <end position="732"/>
        </location>
    </feature>
    <feature type="modified residue" description="Phosphohistidine" evidence="3">
        <location>
            <position position="60"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00000085"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00012438"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00110"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="PROSITE" id="PS50109"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="PROSITE" id="PS50851"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="PROSITE" id="PS50894"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="ABX33301.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="732" mass="77582" checksum="DF0C3791AEA50EE1" modified="2008-01-15" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="94" xmlns="http://uniprot.org/uniprot">
    <accession>A9BRE4</accession>
    <name>A9BRE4_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="5">Protein-glutamate methylesterase/protein-glutamine glutaminase</fullName>
            <ecNumber evidence="5">3.1.1.61</ecNumber>
            <ecNumber evidence="5">3.5.1.44</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="5" type="primary">cheB</name>
        <name evidence="10" type="ordered locus">Daci_0659</name>
    </gene>
    <organism evidence="10 11">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="10 11" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="11">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="11" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="11">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="5">Involved in chemotaxis. Part of a chemotaxis signal transduction system that modulates chemotaxis in response to various stimuli. Catalyzes the demethylation of specific methylglutamate residues introduced into the chemoreceptors (methyl-accepting chemotaxis proteins or MCP) by CheR. Also mediates the irreversible deamidation of specific glutamine residues to glutamic acid.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="5">
            <text>H2O + L-glutaminyl-[protein] = L-glutamyl-[protein] + NH4(+)</text>
            <dbReference type="Rhea" id="RHEA:16441"/>
            <dbReference type="Rhea" id="RHEA-COMP:10207"/>
            <dbReference type="Rhea" id="RHEA-COMP:10208"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:28938"/>
            <dbReference type="ChEBI" id="CHEBI:29973"/>
            <dbReference type="ChEBI" id="CHEBI:30011"/>
            <dbReference type="EC" id="3.5.1.44"/>
        </reaction>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1 5">
            <text>[protein]-L-glutamate 5-O-methyl ester + H2O = H(+) + L-glutamyl-[protein] + methanol</text>
            <dbReference type="Rhea" id="RHEA:23236"/>
            <dbReference type="Rhea" id="RHEA-COMP:10208"/>
            <dbReference type="Rhea" id="RHEA-COMP:10311"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:17790"/>
            <dbReference type="ChEBI" id="CHEBI:29973"/>
            <dbReference type="ChEBI" id="CHEBI:82795"/>
            <dbReference type="EC" id="3.1.1.61"/>
        </reaction>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="5">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="domain">
        <text evidence="5">Contains a C-terminal catalytic domain, and an N-terminal region which modulates catalytic activity.</text>
    </comment>
    <comment type="PTM">
        <text evidence="5">Phosphorylated by CheA. Phosphorylation of the N-terminal regulatory domain activates the methylesterase activity.</text>
    </comment>
    <comment type="similarity">
        <text evidence="5">Belongs to the CheB family.</text>
    </comment>
    <dbReference type="EC" id="3.1.1.61" evidence="5"/>
    <dbReference type="EC" id="3.5.1.44" evidence="5"/>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX33305.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012202591.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_0659"/>
    <dbReference type="PRIDE" id="A9BRE4"/>
    <dbReference type="EnsemblBacteria" id="ABX33305">
        <property type="protein sequence ID" value="ABX33305"/>
        <property type="gene ID" value="Daci_0659"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_0659"/>
    <dbReference type="eggNOG" id="COG2201">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_000445_51_0_4"/>
    <dbReference type="OMA" id="MLEMHRA"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000156">
        <property type="term" value="F:phosphorelay response regulator activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008984">
        <property type="term" value="F:protein-glutamate methylesterase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0050568">
        <property type="term" value="F:protein-glutamine glutaminase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006935">
        <property type="term" value="P:chemotaxis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0018277">
        <property type="term" value="P:protein deamination"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006482">
        <property type="term" value="P:protein demethylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd16432">
        <property type="entry name" value="CheB_Rec"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.180">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00099">
        <property type="entry name" value="CheB_chemtxs"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008248">
        <property type="entry name" value="CheB-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035909">
        <property type="entry name" value="CheB_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011006">
        <property type="entry name" value="CheY-like_superfamily"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000673">
        <property type="entry name" value="Sig_transdc_resp-reg_Me-estase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001789">
        <property type="entry name" value="Sig_transdc_resp-reg_receiver"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01339">
        <property type="entry name" value="CheB_methylest"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00072">
        <property type="entry name" value="Response_reg"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF000876">
        <property type="entry name" value="RR_chemtxs_CheB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00448">
        <property type="entry name" value="REC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52172">
        <property type="entry name" value="SSF52172"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52738">
        <property type="entry name" value="SSF52738"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50122">
        <property type="entry name" value="CHEB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50110">
        <property type="entry name" value="RESPONSE_REGULATORY"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2 5 6" id="KW-0145">Chemotaxis</keyword>
    <keyword evidence="5" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="4 5 6" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="3 5 7" id="KW-0597">Phosphoprotein</keyword>
    <keyword evidence="11" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Response regulatory" evidence="8">
        <location>
            <begin position="6"/>
            <end position="123"/>
        </location>
    </feature>
    <feature type="domain" description="CheB-type methylesterase" evidence="9">
        <location>
            <begin position="177"/>
            <end position="369"/>
        </location>
    </feature>
    <feature type="active site" evidence="5 6">
        <location>
            <position position="189"/>
        </location>
    </feature>
    <feature type="active site" evidence="5 6">
        <location>
            <position position="215"/>
        </location>
    </feature>
    <feature type="active site" evidence="5 6">
        <location>
            <position position="311"/>
        </location>
    </feature>
    <feature type="modified residue" description="4-aspartylphosphate" evidence="5 7">
        <location>
            <position position="57"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00000941"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022500"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022553"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00099"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00050"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00169"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="PROSITE" id="PS50110"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="9">
        <source>
            <dbReference type="PROSITE" id="PS50122"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="EMBL" id="ABX33305.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="377" mass="40060" checksum="6967788CB13C3A0A" modified="2008-01-15" version="1">MDRKIRVIVVDDSALVRSLLSEIINRQHDMECIGSANDPLIAREMIREMNPDVITLDVEMPRMDGIDFLGRLMRLRPMPVVMISTLTERGAEVTMRALELGAIDFVAKPRVGVSNGLQELAAQIVDKIRVAAVAQVRRLPVAPRSAASAAGSAAAPVASSAGSAVPRQAAPTSLLGRLSTEKLVAIGASTGGTEAIREVLTHLPADCPAIVITQHMPPGFTTSFAARLNSLCQMTVKEAQHGERLLPGHAYIAPGGKHFSVQRSGANYVAVVDDSPPVNRHKPSVEVLFKSVAVCAGRNAYGIMLTGMGADGAVAMREMRDAGSYNLVQDEASCIVFGMPREAIAHGAADEVLPLNQIAAALLGKLRIGSDQVHHRI</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="88" xmlns="http://uniprot.org/uniprot">
    <accession>A9BRV4</accession>
    <name>A9BRV4_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="9">ABC transporter related</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="9" type="ordered locus">Daci_1025</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="9 10" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="10" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX33671.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_1025"/>
    <dbReference type="PRIDE" id="A9BRV4"/>
    <dbReference type="EnsemblBacteria" id="ABX33671">
        <property type="protein sequence ID" value="ABX33671"/>
        <property type="gene ID" value="Daci_1025"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_1025"/>
    <dbReference type="eggNOG" id="COG3839">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_000604_1_1_4"/>
    <dbReference type="OMA" id="FSEPPIN"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043190">
        <property type="term" value="C:ATP-binding cassette (ABC) transporter complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015408">
        <property type="term" value="F:ABC-type ferric iron transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd03259">
        <property type="entry name" value="ABC_Carb_Solutes_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.50.140">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003593">
        <property type="entry name" value="AAA+_ATPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003439">
        <property type="entry name" value="ABC_transporter-like_ATP-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017871">
        <property type="entry name" value="ABC_transporter-like_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015853">
        <property type="entry name" value="ABC_transpr_FbpC"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008995">
        <property type="entry name" value="Mo/tungstate-bd_C_term_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012340">
        <property type="entry name" value="NA-bd_OB-fold"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013611">
        <property type="entry name" value="Transp-assoc_OB_typ2"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00005">
        <property type="entry name" value="ABC_tran"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08402">
        <property type="entry name" value="TOBE_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00382">
        <property type="entry name" value="AAA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50331">
        <property type="entry name" value="SSF50331"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00211">
        <property type="entry name" value="ABC_TRANSPORTER_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50893">
        <property type="entry name" value="ABC_TRANSPORTER_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4 7" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="2" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="6" id="KW-0472">Membrane</keyword>
    <keyword evidence="3 7" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="5" id="KW-1278">Translocase</keyword>
    <keyword evidence="1" id="KW-0813">Transport</keyword>
    <feature type="domain" description="ABC transporter" evidence="8">
        <location>
            <begin position="31"/>
            <end position="259"/>
        </location>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <begin position="63"/>
            <end position="70"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022448"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022967"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00434"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="PROSITE" id="PS50893"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="ABX33671.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="387" mass="41299" checksum="4F58C408F92BFD55" modified="2008-01-15" version="1">MARNRRLERDVSPCSIAAPEAASSVRAVVELVLERISKRVGGQTWLHPMHLELESGAVTVLLGATQAGKTSLMRIMAGLDVPTEGRVRADGVDVTGMPVRERNVAMVYQQFINYPSLTVADNIASPLKLRGDRDVAQRVRALAERLHIEMFLDRYPAELSGGQQQRVALARALAKGAPLMLLDEPLVNLDYKLREELREELTQLFATGDSTVVYATTEPGEALLLGGYTAVLHEGELLQYGPTAEVFHQPNSLRVARAFSDPPMNLIAASAVEGGLQLPGGARLPVALPADLAASGPLTLGLRASALRLQSRPGDLALQGVVELAEISGSDTFVHATTPWGELVAQVTGVHHLDLGSAVTLHLDPAHAYVFGTDGALLLAPARPGGR</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="66" xmlns="http://uniprot.org/uniprot">
    <accession>A9BS38</accession>
    <name>A9BS38_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Enoyl-CoA hydratase/isomerase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_0802</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the enoyl-CoA hydratase/isomerase family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX33448.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012202734.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_0802"/>
    <dbReference type="PRIDE" id="A9BS38"/>
    <dbReference type="EnsemblBacteria" id="ABX33448">
        <property type="protein sequence ID" value="ABX33448"/>
        <property type="gene ID" value="Daci_0802"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_0802"/>
    <dbReference type="eggNOG" id="COG1024">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_009834_7_3_4"/>
    <dbReference type="OMA" id="IARMPGW"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016853">
        <property type="term" value="F:isomerase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029045">
        <property type="entry name" value="ClpP/crotonase-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018376">
        <property type="entry name" value="Enoyl-CoA_hyd/isom_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001753">
        <property type="entry name" value="Enoyl-CoA_hydra/iso"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00378">
        <property type="entry name" value="ECH_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52096">
        <property type="entry name" value="SSF52096"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00166">
        <property type="entry name" value="ENOYL_COA_HYDRATASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2" id="KW-0413">Isomerase</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="RuleBase" id="RU003707"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX33448.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="262" mass="27586" checksum="1AC498A46699FD95" modified="2008-01-15" version="1">MHAQVTFPTPQTAVLTITGGGPLNILGTPVIRALTAQLAELAERPGLHCLVLRGSGTRAFVAGADIREMASLNAASARAFISGLRDLCNAVRHFPVPVIARLQGHTLGGGLELAMAADLRIAADDAVVGMPEVKVGIPSVIHAAMMPAQIGGTRASWLLLTGENIGALQAERWGLLNECVPGDQLDARIAQIAEGLGGIGIEALRQQKRLLRRWEGMGVDSAITDSVAEFGAAFNTGEPQHHMNAFLERKQAKAQAQPQPQP</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="58" xmlns="http://uniprot.org/uniprot">
    <accession>A9BS56</accession>
    <name>A9BS56_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">FAD dependent oxidoreductase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_0820</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX33466.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012202752.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_0820"/>
    <dbReference type="PRIDE" id="A9BS56"/>
    <dbReference type="EnsemblBacteria" id="ABX33466">
        <property type="protein sequence ID" value="ABX33466"/>
        <property type="gene ID" value="Daci_0820"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_0820"/>
    <dbReference type="eggNOG" id="COG0665">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_007884_4_2_4"/>
    <dbReference type="OMA" id="AMFMEAY"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016491">
        <property type="term" value="F:oxidoreductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.50.50.60">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006076">
        <property type="entry name" value="FAD-dep_OxRdtase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036188">
        <property type="entry name" value="FAD/NAD-bd_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01266">
        <property type="entry name" value="DAO"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51905">
        <property type="entry name" value="SSF51905"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="DAO" evidence="1">
        <location>
            <begin position="7"/>
            <end position="349"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF01266"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX33466.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="384" mass="40638" checksum="83C7926FBC017835" modified="2008-01-15" version="1">MDSSIRDFVVVGAGMAGASVAWQLARDGGASVLVLERESQPGYHSTGRSAALYEEHYGPLQVQALTRASRAFYEQPPQGFVQAPILAPRGVLYVGTAAQKDLLDAAHAEALLHSPHARRLGPDELKALVPCLNTTLLVDGFADDGARDIDVHGLHQGFLRGLRQCGGELRCSAEVRALAQAAGVWTLDLADGSQVRARCVVNAAGAWADALGALAGAAPIGLVPKRRSAFTFAVPEGMDAAHWPAVISADEGFYFKPDAGQLLGSPANADPVAPQDVAPEELDVATGIWRIEEVTTLQIRRPSHTWAGLRSFVADGEMAVGWDASPAPLPGFFWVAAQGGYGIQSAFGYSLLARNLLRGEPLDVRLAAQGVQPERLSPARCQRS</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-01-19" version="56" xmlns="http://uniprot.org/uniprot">
    <accession>A9BSL4</accession>
    <name>A9BSL4_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Daci_1375</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="4" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX34019.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012203305.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_1375"/>
    <dbReference type="EnsemblBacteria" id="ABX34019">
        <property type="protein sequence ID" value="ABX34019"/>
        <property type="gene ID" value="Daci_1375"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_1375"/>
    <dbReference type="eggNOG" id="COG5361">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_027269_1_1_4"/>
    <dbReference type="OMA" id="ENLGPRN"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.120.600">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.40.1610">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010621">
        <property type="entry name" value="DUF1214"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037049">
        <property type="entry name" value="DUF1214_C_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010679">
        <property type="entry name" value="DUF1254"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037050">
        <property type="entry name" value="DUF1254_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF06742">
        <property type="entry name" value="DUF1214"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF06863">
        <property type="entry name" value="DUF1254"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="DUF1254" evidence="2">
        <location>
            <begin position="66"/>
            <end position="199"/>
        </location>
    </feature>
    <feature type="domain" description="DUF1214" evidence="1">
        <location>
            <begin position="342"/>
            <end position="449"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF06742"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF06863"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ABX34019.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="465" mass="50284" checksum="CD0FD4B6F848F1CE" modified="2008-01-15" version="1">MDMNPTPPSLPEVRRALARSIGLAAFVYGYPLIETYRTCRLQTDAGAARATGLSVGLGLDMRGDFDTLHHSQRPSTHEDRDVVTPANDLLYSLAWIHLADGPRLLTVPSSAAHPGRYFVLALYDAYTENFENLGPRNCAPEGETVVLVGPGGQVPEHLAGHRLVHCPSNLVWLIGRTVVGDAPDWPAARALQADIRLEPAPGVPKGGRPAAVANWVGPPVDAMAAAFENQEPAAEVAPRFFTNLCHALAEAPGRKEDQGLLAWFGQAGLVASAHMAWEQLEEPVREGLTEGFADGVRTVAAMGRNRRPRPWTMTPSTGRYGSEYLGRARTAYLGLGALATSEAIYAAAHHDAGLQPLDGSQRYVLRFDAADMPPADAFWSVTLYDADRFLYGNEIGRHSIGDRTPGLLREADGSLQIDLGHARPAQGAANWLPTPHGRFYLILRMYHPQAGAHQWPVPPLQPVAA</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="70" xmlns="http://uniprot.org/uniprot">
    <accession>A9BSZ9</accession>
    <name>A9BSZ9_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Heavy metal efflux pump, CzcA family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ordered locus">Daci_1716</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="6" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX34359.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012203644.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_1716"/>
    <dbReference type="PRIDE" id="A9BSZ9"/>
    <dbReference type="EnsemblBacteria" id="ABX34359">
        <property type="protein sequence ID" value="ABX34359"/>
        <property type="gene ID" value="Daci_1716"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_1716"/>
    <dbReference type="eggNOG" id="COG3696">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_002755_1_2_4"/>
    <dbReference type="OMA" id="LGEIFMW"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008324">
        <property type="term" value="F:cation transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.2090.10">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027463">
        <property type="entry name" value="AcrB_DN_DC_subdom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001036">
        <property type="entry name" value="Acrflvin-R"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004763">
        <property type="entry name" value="CzcA/CusA/SilA/NccA/HelA/CnrA"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR32063">
        <property type="entry name" value="PTHR32063"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00873">
        <property type="entry name" value="ACR_tran"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00702">
        <property type="entry name" value="ACRIFLAVINRP"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF82714">
        <property type="entry name" value="SSF82714"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00914">
        <property type="entry name" value="2A0601"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-0472">Membrane</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="4" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="4">
        <location>
            <begin position="369"/>
            <end position="389"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="4">
        <location>
            <begin position="452"/>
            <end position="472"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="4">
        <location>
            <begin position="484"/>
            <end position="508"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="4">
        <location>
            <begin position="529"/>
            <end position="555"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="4">
        <location>
            <begin position="880"/>
            <end position="899"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="4">
        <location>
            <begin position="906"/>
            <end position="925"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="4">
        <location>
            <begin position="931"/>
            <end position="956"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="4">
        <location>
            <begin position="981"/>
            <end position="1003"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="4">
        <location>
            <begin position="1009"/>
            <end position="1032"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="3">
        <location>
            <begin position="1039"/>
            <end position="1062"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="3">
        <location>
            <begin position="1041"/>
            <end position="1055"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00010942"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="ABX34359.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="1062" mass="115071" checksum="7592B599E895EA18" modified="2008-01-15" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="94" xmlns="http://uniprot.org/uniprot">
    <accession>A9BT04</accession>
    <name>A9BT04_DELAS</name>
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        <submittedName>
            <fullName evidence="9">Heavy metal translocating P-type ATPase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="9" type="ordered locus">Daci_1721</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="9 10" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="10" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="6">Cell membrane</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="1 6">Belongs to the cation transport ATPase (P-type) (TC 3.A.3) family. Type IB subfamily.</text>
    </comment>
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        <property type="protein sequence ID" value="ABX34364.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
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        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_1721"/>
    <dbReference type="PRIDE" id="A9BT04"/>
    <dbReference type="EnsemblBacteria" id="ABX34364">
        <property type="protein sequence ID" value="ABX34364"/>
        <property type="gene ID" value="Daci_1721"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_1721"/>
    <dbReference type="eggNOG" id="COG2217">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="eggNOG" id="COG2608">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_001771_6_3_4"/>
    <dbReference type="OMA" id="AQVVIMN"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016887">
        <property type="term" value="F:ATP hydrolysis activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0019829">
        <property type="term" value="F:ATPase-coupled cation transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.1110.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.1000">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023299">
        <property type="entry name" value="ATPase_P-typ_cyto_dom_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018303">
        <property type="entry name" value="ATPase_P-typ_P_site"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023298">
        <property type="entry name" value="ATPase_P-typ_TM_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008250">
        <property type="entry name" value="ATPase_P-typ_transduc_dom_A_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036412">
        <property type="entry name" value="HAD-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023214">
        <property type="entry name" value="HAD_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006121">
        <property type="entry name" value="HMA_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036163">
        <property type="entry name" value="HMA_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027256">
        <property type="entry name" value="P-typ_ATPase_IB"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001757">
        <property type="entry name" value="P_typ_ATPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR044492">
        <property type="entry name" value="P_typ_ATPase_HD_dom"/>
    </dbReference>
    <dbReference type="SFLD" id="SFLDF00027">
        <property type="entry name" value="p-type_atpase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55008">
        <property type="entry name" value="SSF55008"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56784">
        <property type="entry name" value="SSF56784"/>
        <property type="match status" value="1"/>
    </dbReference>
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        <property type="entry name" value="SSF81653"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF81665">
        <property type="entry name" value="SSF81665"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01525">
        <property type="entry name" value="ATPase-IB_hvy"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01494">
        <property type="entry name" value="ATPase_P-type"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00154">
        <property type="entry name" value="ATPASE_E1_E2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50846">
        <property type="entry name" value="HMA_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="6" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="5 6" id="KW-0472">Membrane</keyword>
    <keyword evidence="6" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="6" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-1278">Translocase</keyword>
    <keyword evidence="2 6" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="4 6" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="185"/>
            <end position="205"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="211"/>
            <end position="229"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="429"/>
            <end position="448"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="460"/>
            <end position="484"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="773"/>
            <end position="791"/>
        </location>
    </feature>
    <feature type="domain" description="HMA" evidence="8">
        <location>
            <begin position="84"/>
            <end position="149"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="7">
        <location>
            <begin position="149"/>
            <end position="175"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="7">
        <location>
            <begin position="156"/>
            <end position="175"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00006024"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022967"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="RuleBase" id="RU362081"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="PROSITE" id="PS50846"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="ABX34364.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="822" mass="88121" checksum="B0BBFDBE26E83159" modified="2008-01-15" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-05-25" version="45" xmlns="http://uniprot.org/uniprot">
    <accession>A9BT23</accession>
    <name>A9BT23_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ordered locus">Daci_1740</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
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                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="5" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX34383.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012203668.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_1740"/>
    <dbReference type="EnsemblBacteria" id="ABX34383">
        <property type="protein sequence ID" value="ABX34383"/>
        <property type="gene ID" value="Daci_1740"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_1740"/>
    <dbReference type="eggNOG" id="COG0845">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_114910_0_0_4"/>
    <dbReference type="OMA" id="EPHEDAY"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0472">Membrane</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0732">Signal</keyword>
    <keyword evidence="2" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="2" id="KW-1133">Transmembrane helix</keyword>
    <feature type="signal peptide" evidence="3">
        <location>
            <begin position="1"/>
            <end position="24"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5002733056" evidence="3">
        <location>
            <begin position="25"/>
            <end position="194"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="161"/>
            <end position="181"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="30"/>
            <end position="52"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="ABX34383.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="194" mass="20485" checksum="E80DFBE5DBECA403" modified="2008-01-15" version="1">MNFKKHCMGYVAAALFAFADVSLAAPGAHGPNGEHLDGPATQVQGSSAPRLETRSESFEMVGRLSVSEFSMFINRYETNEPVLNAQVELELGNLKATAPFHADQGDYAVADEAFLKALAAPGEHAMVIMVTAGNEADLLDGTLVVLSESAEHGHGHHMSNAIKAAIVAGLALLFLIGWAVMRRKATAKKAGVSQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="47" xmlns="http://uniprot.org/uniprot">
    <accession>A9BT50</accession>
    <name>A9BT50_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_1975</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX34615.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012203900.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_1975"/>
    <dbReference type="PRIDE" id="A9BT50"/>
    <dbReference type="EnsemblBacteria" id="ABX34615">
        <property type="protein sequence ID" value="ABX34615"/>
        <property type="gene ID" value="Daci_1975"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_1975"/>
    <dbReference type="eggNOG" id="COG3121">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_1037167_0_0_4"/>
    <dbReference type="OMA" id="GSCRPWV"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="1">
        <location>
            <begin position="1"/>
            <end position="21"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5002736019" evidence="1">
        <location>
            <begin position="22"/>
            <end position="268"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX34615.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="268" mass="28539" checksum="28E9F1846BC05E35" modified="2008-01-15" version="1">MKAPLIAASLALLIACSGAAAAPFELAVAPSRFELSAKPGARTGQSLDIHNLASAPTEVAMRTIDWTYSDTGDITYHDELLPGSCRPWVLLERRSVTIAGRSKKAFRFQVEPPADAPRGECRFMIAIEGVEPAQQTVIRSGGASLSLPVTGRIAVAVYVTLGGASPQLDIRQLSMAEDGKTRRALVTVSNTGDAHGRLEGSLDAVDNKGRRFELVPEGTPILPGQTRTLALMPKGEDGQPAPQPVYPVKAKGSLDWEKGSFKIDVELK</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="87" xmlns="http://uniprot.org/uniprot">
    <accession>A9BT55</accession>
    <name>A9BT55_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="3">4-hydroxythreonine-4-phosphate dehydrogenase</fullName>
            <ecNumber evidence="3">1.1.1.262</ecNumber>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Daci_1980</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="4" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EC" id="1.1.1.262" evidence="3"/>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX34620.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_1980"/>
    <dbReference type="PRIDE" id="A9BT55"/>
    <dbReference type="EnsemblBacteria" id="ABX34620">
        <property type="protein sequence ID" value="ABX34620"/>
        <property type="gene ID" value="Daci_1980"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_1980"/>
    <dbReference type="eggNOG" id="COG1995">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="eggNOG" id="COG2070">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_033978_0_0_4"/>
    <dbReference type="OMA" id="ACHAYIQ"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0050570">
        <property type="term" value="F:4-hydroxythreonine-4-phosphate dehydrogenase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051287">
        <property type="term" value="F:NAD binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.20.20.70">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013785">
        <property type="entry name" value="Aldolase_TIM"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005255">
        <property type="entry name" value="PdxA_fam"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30004">
        <property type="entry name" value="PTHR30004"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04166">
        <property type="entry name" value="PdxA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00557">
        <property type="entry name" value="pdxA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="2 3" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023002"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ABX34620.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="553" mass="57993" checksum="8A9D9833DE6D3BA2" modified="2008-01-15" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="73" xmlns="http://uniprot.org/uniprot">
    <accession>A9BT78</accession>
    <name>A9BT78_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="6">Nitrite reductase (NAD(P)H), small subunit</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ordered locus">Daci_2003</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="7" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX34643.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012203928.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_2003"/>
    <dbReference type="PRIDE" id="A9BT78"/>
    <dbReference type="EnsemblBacteria" id="ABX34643">
        <property type="protein sequence ID" value="ABX34643"/>
        <property type="gene ID" value="Daci_2003"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_2003"/>
    <dbReference type="eggNOG" id="COG2146">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_055690_3_0_4"/>
    <dbReference type="OMA" id="AAPLYKQ"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051537">
        <property type="term" value="F:2 iron, 2 sulfur cluster binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008942">
        <property type="term" value="F:nitrite reductase [NAD(P)H] activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0042128">
        <property type="term" value="P:nitrate assimilation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd03529">
        <property type="entry name" value="Rieske_NirD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.102.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017881">
        <property type="entry name" value="NirD"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012748">
        <property type="entry name" value="Rieske-like_NirD"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017941">
        <property type="entry name" value="Rieske_2Fe-2S"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036922">
        <property type="entry name" value="Rieske_2Fe-2S_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR40562">
        <property type="entry name" value="PTHR40562"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13806">
        <property type="entry name" value="Rieske_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50022">
        <property type="entry name" value="SSF50022"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR02378">
        <property type="entry name" value="nirD_assim_sml"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51296">
        <property type="entry name" value="RIESKE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0408">Iron</keyword>
    <keyword evidence="3" id="KW-0411">Iron-sulfur</keyword>
    <keyword evidence="1" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="4" id="KW-0534">Nitrate assimilation</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Rieske" evidence="5">
        <location>
            <begin position="10"/>
            <end position="110"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023004"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023014"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023063"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="PROSITE" id="PS51296"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="ABX34643.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="113" mass="12368" checksum="A4FABFFBFA77791F" modified="2008-01-15" version="1">MTHPAQEQWMPVCATRDIVPDTGVCALVEGRHVAVFRLGEDRFYAIDNVDPRCGASVLARGLVGSLGERVVVASPIYKHHFDLATGECLEAPEHSVRVHAVRNENGQLMVALH</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="75" xmlns="http://uniprot.org/uniprot">
    <accession>A9BTA8</accession>
    <name>A9BTA8_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">Heme chaperone HemW</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="4" type="ordered locus">Daci_2033</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="5" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="2">Probably acts as a heme chaperone, transferring heme to an unknown acceptor. Binds one molecule of heme per monomer, possibly covalently. Binds 1 [4Fe-4S] cluster. The cluster is coordinated with 3 cysteines and an exchangeable S-adenosyl-L-methionine.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="2">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="1">Belongs to the anaerobic coproporphyrinogen-III oxidase family. HemW subfamily.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX34673.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012203958.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_2033"/>
    <dbReference type="PRIDE" id="A9BTA8"/>
    <dbReference type="EnsemblBacteria" id="ABX34673">
        <property type="protein sequence ID" value="ABX34673"/>
        <property type="gene ID" value="Daci_2033"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_2033"/>
    <dbReference type="eggNOG" id="COG0635">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_027579_2_1_4"/>
    <dbReference type="OMA" id="HIPWCVR"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051539">
        <property type="term" value="F:4 iron, 4 sulfur cluster binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004109">
        <property type="term" value="F:coproporphyrinogen oxidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006779">
        <property type="term" value="P:porphyrin-containing compound biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR034505">
        <property type="entry name" value="Coproporphyrinogen-III_oxidase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006638">
        <property type="entry name" value="Elp3/MiaB/NifB"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010723">
        <property type="entry name" value="HemN_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004559">
        <property type="entry name" value="HemW-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007197">
        <property type="entry name" value="rSAM"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR13932">
        <property type="entry name" value="PTHR13932"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF06969">
        <property type="entry name" value="HemN_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04055">
        <property type="entry name" value="Radical_SAM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SFLD" id="SFLDF00562">
        <property type="entry name" value="HemN-like__clustered_with_heat"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SFLD" id="SFLDS00029">
        <property type="entry name" value="Radical_SAM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00729">
        <property type="entry name" value="Elp3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00539">
        <property type="entry name" value="hemN_rel"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51918">
        <property type="entry name" value="RADICAL_SAM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2" id="KW-0004">4Fe-4S</keyword>
    <keyword evidence="2" id="KW-0143">Chaperone</keyword>
    <keyword evidence="2" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="2" id="KW-0349">Heme</keyword>
    <keyword evidence="2" id="KW-0408">Iron</keyword>
    <keyword evidence="2" id="KW-0411">Iron-sulfur</keyword>
    <keyword evidence="2" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="4" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0949">S-adenosyl-L-methionine</keyword>
    <feature type="domain" description="Radical SAM core" evidence="3">
        <location>
            <begin position="32"/>
            <end position="267"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00006100"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="RuleBase" id="RU364116"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="PROSITE" id="PS51918"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="ABX34673.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="414" mass="46240" checksum="4E874570EC08C3C6" modified="2008-01-15" version="1">MIPIQPQDSASGAQAAVQRDIQHYMRPGTLQLGSLPPLSLYVHLPWCIRKCPYCDFNSHEHGRDGPELPEDRYIDALVADLESALPLIWGRTVHSIFIGGGTPSLFAPESIDRLLAAIRARLRMEADCEITMEANPGTFETDRFRAFRAAGVTRLSIGVQSFDDRLLQAVGRVHDGAQARAAVREAADSFETFNIDLMYALPGQTELDLARDLDVAMSFAPPHLSVYHLTIEPNTYFAKFPPAIPEDDLAYDMLDRITARTAAAGMQRYEISAYAREGHQCWHNRNYWQFGDYLGIGAGAHSKLSFAHRIVRQVRFRDPARYMDQALAGAPLAQDGEVRRADLPFEYMLNALRLREGFALQDFMERTGLPLSSIAKGLDAAQAKGLITRDLGRVVPTERGFDFLSDLQELFLAE</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="82" xmlns="http://uniprot.org/uniprot">
    <accession>A9BTD3</accession>
    <name>A9BTD3_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">Histidine kinase</fullName>
            <ecNumber evidence="2">2.7.13.3</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="6" type="ordered locus">Daci_2058</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="7" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>ATP + protein L-histidine = ADP + protein N-phospho-L-histidine.</text>
            <dbReference type="EC" id="2.7.13.3"/>
        </reaction>
    </comment>
    <dbReference type="EC" id="2.7.13.3" evidence="2"/>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX34698.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_2058"/>
    <dbReference type="PRIDE" id="A9BTD3"/>
    <dbReference type="EnsemblBacteria" id="ABX34698">
        <property type="protein sequence ID" value="ABX34698"/>
        <property type="gene ID" value="Daci_2058"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_2058"/>
    <dbReference type="eggNOG" id="COG4191">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_044199_0_0_4"/>
    <dbReference type="OMA" id="AYAFPTY"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000155">
        <property type="term" value="F:phosphorelay sensor kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd00082">
        <property type="entry name" value="HisKA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.565.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003594">
        <property type="entry name" value="HATPase_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036890">
        <property type="entry name" value="HATPase_C_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005467">
        <property type="entry name" value="His_kinase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003661">
        <property type="entry name" value="HisK_dim/P"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036097">
        <property type="entry name" value="HisK_dim/P_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004358">
        <property type="entry name" value="Sig_transdc_His_kin-like_C"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02518">
        <property type="entry name" value="HATPase_c"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00512">
        <property type="entry name" value="HisKA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00344">
        <property type="entry name" value="BCTRLSENSOR"/>
    </dbReference>
    <dbReference type="SMART" id="SM00387">
        <property type="entry name" value="HATPase_c"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00388">
        <property type="entry name" value="HisKA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47384">
        <property type="entry name" value="SSF47384"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55874">
        <property type="entry name" value="SSF55874"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50109">
        <property type="entry name" value="HIS_KIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="6" id="KW-0418">Kinase</keyword>
    <keyword evidence="4" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-0597">Phosphoprotein</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="6" id="KW-0808">Transferase</keyword>
    <keyword evidence="4" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="4" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="4">
        <location>
            <begin position="24"/>
            <end position="45"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="4">
        <location>
            <begin position="199"/>
            <end position="219"/>
        </location>
    </feature>
    <feature type="domain" description="Histidine kinase" evidence="5">
        <location>
            <begin position="251"/>
            <end position="473"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00000085"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00012438"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022553"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="PROSITE" id="PS50109"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="ABX34698.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="474" mass="50567" checksum="CBDE6A863A3A2606" modified="2008-01-15" version="1">MYVPAHHFQEPALSPQKSIQRDLVILWLTISAVALVLAWLLLLLTRQGTDQQVSRARDAAGVSCSALQAGAARMGLAGLMADTPSAQARSAAQAVLDLALRERPGMEGGFWREGPGVVAYAFPTYDGSGIKRDAPSAEMERIASTAQRARDSAGLVTDLRPGLREAVVFAACPAQADAPALVAWTLMRVPLISADVVNPLILAVSLLLGMVLVSGLWLGRMLRRWQRQSAQMEQQLLSAERLATLGRLSAGLAHEIRNPLGTMRMKAENALAAPAPLREARSQGALEAVLAQTARLEDLVSSLLALTQPFRVQPEPVDLQQLLDERLQAHAELAQARGVQLATAVSAGLARDLQDGRRPLLDPAQMARALDNLLLNALAHTAAGGRVELGADRSGTTVSHRNSPLQLWVADDGTGIAPELRDTLFEPFTTARPGGTGLGLALVREIVLAHGGRIALGKTTQGTRIEMEFPWPAS</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="81" xmlns="http://uniprot.org/uniprot">
    <accession>A9BTH6</accession>
    <name>A9BTH6_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Putative transcriptional regulator, ArsR family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_2306</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX34944.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012204227.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="PRIDE" id="A9BTH6"/>
    <dbReference type="EnsemblBacteria" id="ABX34944">
        <property type="protein sequence ID" value="ABX34944"/>
        <property type="gene ID" value="Daci_2306"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_2306"/>
    <dbReference type="eggNOG" id="COG0640">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_097806_4_2_4"/>
    <dbReference type="OMA" id="AIAKSTM"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003700">
        <property type="term" value="F:DNA-binding transcription factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd00090">
        <property type="entry name" value="HTH_ARSR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011991">
        <property type="entry name" value="ArsR-like_HTH"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001845">
        <property type="entry name" value="HTH_ArsR_DNA-bd_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036390">
        <property type="entry name" value="WH_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00778">
        <property type="entry name" value="HTHARSR"/>
    </dbReference>
    <dbReference type="SMART" id="SM00418">
        <property type="entry name" value="HTH_ARSR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46785">
        <property type="entry name" value="SSF46785"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50987">
        <property type="entry name" value="HTH_ARSR_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HTH arsR-type" evidence="1">
        <location>
            <begin position="5"/>
            <end position="98"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS50987"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX34944.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="116" mass="12898" checksum="2672EECF04EF309B" modified="2008-01-15" version="1">MLANHPDREQIRLENLLNALGNPLRLAVVRALAAGHERACGSLLQGQSKSTMTHHWRVLRDSGVIWQRPDGRENLLSLRREDLDARFPGLLDALLQALAEDPLTEQATAAHLKPCP</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="47" xmlns="http://uniprot.org/uniprot">
    <accession>A9BTJ0</accession>
    <name>A9BTJ0_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Daci_2320</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="2" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX34958.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012204240.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_2320"/>
    <dbReference type="PRIDE" id="A9BTJ0"/>
    <dbReference type="EnsemblBacteria" id="ABX34958">
        <property type="protein sequence ID" value="ABX34958"/>
        <property type="gene ID" value="Daci_2320"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_2320"/>
    <dbReference type="eggNOG" id="ENOG5032VDB">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_111600_0_0_4"/>
    <dbReference type="OMA" id="EDLCVAK"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ABX34958.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="178" mass="19763" checksum="1D35F8B9AC65377F" modified="2008-01-15" version="1">MNREDLEHIIRASGDVTNEYEFVIVGSQAILGSIPYPEPVFKMSAEADIYPLNAPDLADRIDGSIGEGSRFHESNGYYAQGVGPDTAVLASGWQNRLHRIQNGNTNDRVGYCLDVLDLFLSKAQAGRDKDRVFCMALMEHGHVQVDAALKLASSMPLGDDGKRQLRARIQRWFKGLKK</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="60" xmlns="http://uniprot.org/uniprot">
    <accession>A9BTL7</accession>
    <name>A9BTL7_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Galactarate dehydratase</fullName>
            <ecNumber evidence="4">4.2.1.42</ecNumber>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ordered locus">Daci_2347</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="5" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the UxaA family.</text>
    </comment>
    <dbReference type="EC" id="4.2.1.42" evidence="4"/>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX34985.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012204267.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_2347"/>
    <dbReference type="PRIDE" id="A9BTL7"/>
    <dbReference type="EnsemblBacteria" id="ABX34985">
        <property type="protein sequence ID" value="ABX34985"/>
        <property type="gene ID" value="Daci_2347"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_2347"/>
    <dbReference type="eggNOG" id="COG2721">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_029189_0_0_4"/>
    <dbReference type="OMA" id="MRHDKRE"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008867">
        <property type="term" value="F:galactarate dehydratase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="CDD" id="cd11613">
        <property type="entry name" value="SAF_AH_GD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007392">
        <property type="entry name" value="Gal/Altron_deHydtase_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013974">
        <property type="entry name" value="SAF"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR044144">
        <property type="entry name" value="UxaA/GarD_SAF"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04295">
        <property type="entry name" value="GD_AH_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08666">
        <property type="entry name" value="SAF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00858">
        <property type="entry name" value="SAF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2 4" id="KW-0456">Lyase</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="SAF" evidence="3">
        <location>
            <begin position="15"/>
            <end position="84"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00010986"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023239"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="SMART" id="SM00858"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="ABX34985.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="509" mass="54313" checksum="AA41377D371B46C4" modified="2008-01-15" version="1">MSRTDSPLLHLHPNDNVLVARTALSLGQEIPELGVRARAQVPAGHKIAARRIAEGEQVKKYDTVIGVAMRELEAGDYVHSHNLRIVDYYRDPAFGADVRSVDYVPEAQRASFQGFVRAGGGVGTRNFIGILSSVNCSATVIKRIAAHFTAERMAAFPNVDGVVAFAQTSGCGMSSPSEHFDVLRRTLAGYARHPNLAGVLIVGLGCERNQVDALVQSQGLSEGRLMRTLVMQEVGGTRVTIEAGIRAIEEMLPEADAARRSTVSASHLKIGLECGGSDGFSGITANPALGAAMDILVRHGGTAILSETPEIHGVEFMLTRRAITPAVGQKLLDRLAWWERYAAGQNAQFNGVVGHGNQAGGLANIFEKSLGSAMKGGTTPLRAVYEYAEPITEPGFVFMDSPGYDPVASTGQIASGAHLICFTTGRGSMFGSKPAPTIKLASNTPMYRRLEEDMDINCGLIVDGECGVPEMGQRIFAQILRHASGEPTKSEALGLGDHEFVPWHLGIVS</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="77" xmlns="http://uniprot.org/uniprot">
    <accession>A9BTQ1</accession>
    <name>A9BTQ1_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Transcriptional regulator, LysR family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Daci_2677</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="4" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the LysR transcriptional regulatory family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX35315.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_2677"/>
    <dbReference type="PRIDE" id="A9BTQ1"/>
    <dbReference type="EnsemblBacteria" id="ABX35315">
        <property type="protein sequence ID" value="ABX35315"/>
        <property type="gene ID" value="Daci_2677"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_2677"/>
    <dbReference type="eggNOG" id="COG0583">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_039613_6_1_4"/>
    <dbReference type="OMA" id="VCKYYLM"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003700">
        <property type="term" value="F:DNA-binding transcription factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005119">
        <property type="entry name" value="LysR_subst-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000847">
        <property type="entry name" value="Tscrpt_reg_HTH_LysR"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036390">
        <property type="entry name" value="WH_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00126">
        <property type="entry name" value="HTH_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03466">
        <property type="entry name" value="LysR_substrate"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00039">
        <property type="entry name" value="HTHLYSR"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46785">
        <property type="entry name" value="SSF46785"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50931">
        <property type="entry name" value="HTH_LYSR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HTH lysR-type" evidence="2">
        <location>
            <begin position="1"/>
            <end position="53"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00009437"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS50931"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ABX35315.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="286" mass="31916" checksum="042FCF00A3A98A5A" modified="2008-01-15" version="1">MKAFDATARAGSMTAAAKLLDLQQPTISAHIQRLENEYGVELFLRQGRRLELTTFGRTLLDYTRRAFSGEEDAHALLAAAKNRFVGRLVIHAIGPYNVVPVLKAFGSRHPQVEVSVRVGDSRSITEKLLDYQGDVGVVLNHAEHPELHCMPYRSQRLVVFANREHALARCGEIVLKDLQSQRFVIREEGSTTRRVFESELIARNINIQVALEMGSREAVREAVAQGIGLGVVAETAYVPDPRLVKLKILDTAMATHVDFICRRERQNAPLIATIFDLAKEVRRGLA</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="63" xmlns="http://uniprot.org/uniprot">
    <accession>A9BTQ8</accession>
    <name>A9BTQ8_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="10">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="10" type="ordered locus">Daci_2684</name>
    </gene>
    <organism evidence="10 11">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="10 11" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="11">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="11" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="11">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the ABC-4 integral membrane protein family. LolC/E subfamily.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX35322.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_003056108.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_2684"/>
    <dbReference type="PRIDE" id="A9BTQ8"/>
    <dbReference type="EnsemblBacteria" id="ABX35322">
        <property type="protein sequence ID" value="ABX35322"/>
        <property type="gene ID" value="Daci_2684"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_2684"/>
    <dbReference type="eggNOG" id="COG0577">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_000604_8_9_4"/>
    <dbReference type="OMA" id="IIYTMTM"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003838">
        <property type="entry name" value="ABC3_permease_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025857">
        <property type="entry name" value="MacB_PCD"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02687">
        <property type="entry name" value="FtsX"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12704">
        <property type="entry name" value="MacB_PCD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="6 7" id="KW-0472">Membrane</keyword>
    <keyword evidence="11" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4 7" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="5 7" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="12"/>
            <end position="37"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="284"/>
            <end position="306"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="327"/>
            <end position="349"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="369"/>
            <end position="391"/>
        </location>
    </feature>
    <feature type="domain" description="MacB_PCD" evidence="9">
        <location>
            <begin position="21"/>
            <end position="256"/>
        </location>
    </feature>
    <feature type="domain" description="FtsX" evidence="8">
        <location>
            <begin position="312"/>
            <end position="395"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00005236"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="Pfam" id="PF02687"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="9">
        <source>
            <dbReference type="Pfam" id="PF12704"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="EMBL" id="ABX35322.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="401" mass="43091" checksum="076CAAFE8AF1AE15" modified="2008-01-15" version="1">MISLAGRDILHAWGKFVFTGIGLGLLIGVTLVMAGVYRGMVDDGKALLDNSGADLWVVQKDTLGPYAESSSLNDDVYRAILAMPGVSQAANVTYLTMQVRKGESDVRTMVVGIAPGALGATPGWPPYLVAGRQITRGHYEAVADIATGFKLGDRLAIRRNHYTVVGLTRRMVSSSGDPMVFIPLKDAQEAQFLKDNDAIWQSRRRTEANPAFNRPGVTGLLDAVIASQSTNAFVNAVLVTLKPGHAPDEVAESIRRWKRLTVYTRAQMEDILVGKLIATSAKQIGMFLVILAIVSAAIVAFIIYSLTMDKIREIAVLKLIGTRNRTIAAMIMQQALALGVIGFVVGKITATFSAPLFPKYVLLMPFDSIAGFFAVLVICVLASIVAIRMALKVDPAEAIGG</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="45" xmlns="http://uniprot.org/uniprot">
    <accession>A9BU56</accession>
    <name>A9BU56_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Pentapeptide MXKDX repeat protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Daci_3133</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="4" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX35771.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012204972.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_3133"/>
    <dbReference type="PRIDE" id="A9BU56"/>
    <dbReference type="EnsemblBacteria" id="ABX35771">
        <property type="protein sequence ID" value="ABX35771"/>
        <property type="gene ID" value="Daci_3133"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_3133"/>
    <dbReference type="eggNOG" id="ENOG50335GG">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_148386_1_0_4"/>
    <dbReference type="OMA" id="HDGMMKD"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014299">
        <property type="entry name" value="Penta_MxKDx"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR02953">
        <property type="entry name" value="penta_MxKDx"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="2">
        <location>
            <begin position="1"/>
            <end position="23"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5002732515" evidence="2">
        <location>
            <begin position="24"/>
            <end position="104"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="33"/>
            <end position="104"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="42"/>
            <end position="104"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ABX35771.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="104" mass="11034" checksum="E9C9728304BD60F8" modified="2008-01-15" version="1">MTKLTTTLLATCLALAGATTAFAADEMAKDGMSNGAMSKDSMSKDGMKKDSMAKDGMKKDSMSKDGMKKDSMSKDGMHKDGMHKDGMSKDGMKKDSMGKDAMSK</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-01-19" version="39" xmlns="http://uniprot.org/uniprot">
    <accession>A9BU80</accession>
    <name>A9BU80_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Ypar31 protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Daci_3157</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="2" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX35795.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="ABX35795">
        <property type="protein sequence ID" value="ABX35795"/>
        <property type="gene ID" value="Daci_3157"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_3157"/>
    <dbReference type="eggNOG" id="ENOG5032BTK">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_141630_0_0_4"/>
    <dbReference type="OMA" id="IVPIMIC"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ABX35795.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="158" mass="17486" checksum="0349FC84FB4F653E" modified="2008-01-15" version="1">MNVIEAVMHMSLYAKAPHPVLVVDGVPLELWLKEADCSAVFGEDTVGGLVPAQGWLIDECDLQNAWYLLNPKNENSSTIVPIMICPDDMDMNCTVAVVEQLVDEETVSWARIGRAIDVRNGIVVSVEWVAGNKRAVFDKTAFSAAVDELRRLIEEVWS</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="53" xmlns="http://uniprot.org/uniprot">
    <accession>A9BUF4</accession>
    <name>A9BUF4_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="1">CRISPR-associated protein, Csy1 family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Daci_1213</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="2" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX33857.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012203143.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_1213"/>
    <dbReference type="PRIDE" id="A9BUF4"/>
    <dbReference type="EnsemblBacteria" id="ABX33857">
        <property type="protein sequence ID" value="ABX33857"/>
        <property type="gene ID" value="Daci_1213"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_1213"/>
    <dbReference type="eggNOG" id="ENOG502Z8VU">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_038921_0_0_4"/>
    <dbReference type="OMA" id="CEKYWLD"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013397">
        <property type="entry name" value="CRISPR-assoc_prot_Csy1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF09611">
        <property type="entry name" value="Cas_Csy1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR02564">
        <property type="entry name" value="cas_Csy1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ABX33857.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="465" mass="52178" checksum="FDF32754A8580EAC" modified="2008-01-15" version="1">MPPTPSAMRWHDAIATFIQERLKAKLDKLAEDDLKRQELLAQHQRDTWMEDAARRVTQIQAVTHSLKPIHPDARGTNLYVEPASLPALQELGSHALGQSFAGDVVGNAAALDVYKFLKVEVDGTSLLAALLAQDPGALQALHEDPQQAMGLRDAFVGLTQPRAGAPSSHTRAKQLYWLTGSDACADEGYELLAPLFATTLAHAVHAQVQEDRFGESNKAARQARRERKAHDGVFHDYPGLAVQKMGGTKPQNISQLNSERGGVNYLLASLPPVWRSSDVRLPVHASSVFDRLFIGRPEVRSTVRKLRAFLATDPEPNLQTRERREAFMDALIDEMVSLAGEVQQTLPAGWSRDVERFGKLVREEQLWLDPLRTELRDEADFAREWLWMDWPAEVGKRFANWLNSQLFGQLPVGDAEARVWKKELLTDEDGFVQQLRELRKRLDAPAYIPIRKTHDELVMHRGGAV</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2021-06-02" version="26" xmlns="http://uniprot.org/uniprot">
    <accession>A9BUH2</accession>
    <name>A9BUH2_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Daci_1231</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="2" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX33875.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012203161.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="ABX33875">
        <property type="protein sequence ID" value="ABX33875"/>
        <property type="gene ID" value="Daci_1231"/>
    </dbReference>
    <dbReference type="GeneID" id="60685791"/>
    <dbReference type="KEGG" id="dac:Daci_1231"/>
    <dbReference type="HOGENOM" id="CLU_2616174_0_0_4"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ABX33875.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="78" mass="8476" checksum="7ED4FF49E38D3DC5" modified="2008-01-15" version="1">MSTPFVRPAMQRLQPATAAPCPGATGTRVAASQAAMQAKAQAQMQAQAPSAMEHAMHLDLQTHWPTHRIRSFLSLQPR</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="77" xmlns="http://uniprot.org/uniprot">
    <accession>A9BUP3</accession>
    <name>A9BUP3_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Response regulator receiver modulated diguanylate cyclase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ordered locus">Daci_1507</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="5" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX34151.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012203437.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_1507"/>
    <dbReference type="PRIDE" id="A9BUP3"/>
    <dbReference type="EnsemblBacteria" id="ABX34151">
        <property type="protein sequence ID" value="ABX34151"/>
        <property type="gene ID" value="Daci_1507"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_1507"/>
    <dbReference type="eggNOG" id="COG3706">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_000445_11_28_4"/>
    <dbReference type="OMA" id="NVATNRI"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000160">
        <property type="term" value="P:phosphorelay signal transduction system"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd01949">
        <property type="entry name" value="GGDEF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.70.270">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011006">
        <property type="entry name" value="CheY-like_superfamily"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000160">
        <property type="entry name" value="GGDEF_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029787">
        <property type="entry name" value="Nucleotide_cyclase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043128">
        <property type="entry name" value="Rev_trsase/Diguanyl_cyclase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001789">
        <property type="entry name" value="Sig_transdc_resp-reg_receiver"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00990">
        <property type="entry name" value="GGDEF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00072">
        <property type="entry name" value="Response_reg"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00267">
        <property type="entry name" value="GGDEF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00448">
        <property type="entry name" value="REC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52172">
        <property type="entry name" value="SSF52172"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55073">
        <property type="entry name" value="SSF55073"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00254">
        <property type="entry name" value="GGDEF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50887">
        <property type="entry name" value="GGDEF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50110">
        <property type="entry name" value="RESPONSE_REGULATORY"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0597">Phosphoprotein</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Response regulatory" evidence="2">
        <location>
            <begin position="12"/>
            <end position="129"/>
        </location>
    </feature>
    <feature type="domain" description="GGDEF" evidence="3">
        <location>
            <begin position="172"/>
            <end position="307"/>
        </location>
    </feature>
    <feature type="modified residue" description="4-aspartylphosphate" evidence="1">
        <location>
            <position position="62"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00169"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS50110"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="PROSITE" id="PS50887"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="ABX34151.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="308" mass="33893" checksum="24E18356AB1AA7A2" modified="2008-01-15" version="1">MLDALTGSELPTVLIVDDERLNRSMLAELLSPHYRVLLAKDGPGALVIAHREAHRLQLILLDLAMPGMNGYEVLGALRAQERTAHIAVIFITGQSNAEAEEYGLRLGAADYVSKPIRPAVVEVRVRNQIRLALQRQALERLAMVDGLTGLANRRHFDDVLERAYRRSLRTGEPVGLALIDIDHFKQYNDCYGHVQGDEALKAVAATLQRHARRPYDLAARFGGEEFALILPGESDAPAMAEHFRQEVLRLSIAHAASPTAPQLTVSCGVLTVRQPSAAPLETWLQKADGLLYQAKAQGRNRIEAAVEP</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="69" xmlns="http://uniprot.org/uniprot">
    <accession>A9BUS7</accession>
    <name>A9BUS7_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="4">Nicotinate-nucleotide diphosphorylase (carboxylating)</fullName>
            <ecNumber evidence="4">2.4.2.19</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="8">Quinolinate phosphoribosyltransferase [decarboxylating]</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="12" type="ordered locus">Daci_1541</name>
    </gene>
    <organism evidence="12 13">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="12 13" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="13">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="13" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="13">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="1">Involved in the catabolism of quinolinic acid (QA).</text>
    </comment>
    <comment type="pathway">
        <text evidence="2">Cofactor biosynthesis; NAD(+) biosynthesis; nicotinate D-ribonucleotide from quinolinate: step 1/1.</text>
    </comment>
    <comment type="similarity">
        <text evidence="3 9">Belongs to the NadC/ModD family.</text>
    </comment>
    <dbReference type="EC" id="2.4.2.19" evidence="4"/>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX34185.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012203471.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_1541"/>
    <dbReference type="PRIDE" id="A9BUS7"/>
    <dbReference type="EnsemblBacteria" id="ABX34185">
        <property type="protein sequence ID" value="ABX34185"/>
        <property type="gene ID" value="Daci_1541"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_1541"/>
    <dbReference type="eggNOG" id="COG0157">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_039622_0_1_4"/>
    <dbReference type="OMA" id="DMIMLKD"/>
    <dbReference type="UniPathway" id="UPA00253">
        <property type="reaction ID" value="UER00331"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004514">
        <property type="term" value="F:nicotinate-nucleotide diphosphorylase (carboxylating) activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009435">
        <property type="term" value="P:NAD biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniPathway"/>
    </dbReference>
    <dbReference type="CDD" id="cd01572">
        <property type="entry name" value="QPRTase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.20.20.70">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.1170.20">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013785">
        <property type="entry name" value="Aldolase_TIM"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004393">
        <property type="entry name" value="NadC"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027277">
        <property type="entry name" value="NadC/ModD"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036068">
        <property type="entry name" value="Nicotinate_pribotase-like_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037128">
        <property type="entry name" value="Quinolinate_PRibosylTase_N_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002638">
        <property type="entry name" value="Quinolinate_PRibosylTrfase_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR022412">
        <property type="entry name" value="Quinolinate_PRibosylTrfase_N"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR32179">
        <property type="entry name" value="PTHR32179"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01729">
        <property type="entry name" value="QRPTase_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02749">
        <property type="entry name" value="QRPTase_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF006250">
        <property type="entry name" value="NadC_ModD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51690">
        <property type="entry name" value="SSF51690"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00078">
        <property type="entry name" value="nadC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="6 9 12" id="KW-0328">Glycosyltransferase</keyword>
    <keyword evidence="5" id="KW-0662">Pyridine nucleotide biosynthesis</keyword>
    <keyword evidence="13" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="7 9 12" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="QRPTase_N" evidence="11">
        <location>
            <begin position="38"/>
            <end position="125"/>
        </location>
    </feature>
    <feature type="domain" description="QRPTase_C" evidence="10">
        <location>
            <begin position="127"/>
            <end position="292"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00003237"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00004893"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00009400"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00011944"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022642"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022676"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00033102"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="PIRNR" id="PIRNR006250"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="10">
        <source>
            <dbReference type="Pfam" id="PF01729"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="11">
        <source>
            <dbReference type="Pfam" id="PF02749"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="EMBL" id="ABX34185.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="13">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="293" mass="30835" checksum="08A6371066353F39" modified="2008-01-15" version="1">MSINTANALSARLPVPPLPDLMLEPLVRSALLEDLGRAGDLTTDAIVPADAQAELRLVARQEGVLAGLDMARLAFRALDAQSRFEPVLRDGSELAPGQEIARIHGSARAILTAERVALNYLCHLSGVATATASIARAIADTGARVTCTRKTMPGLRALQKYAVRVGGGSNHRFGLDDAVLIKDNHIALAGGVAEALARARAGVGHMVQIQLEVDTLEQLEVALSLGVEVVLLDNMDLDTLRTAVSMARGRAVTEASGRITPETARAVAETGVDQIAVGWITHSARVLDIGLDT</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="71" xmlns="http://uniprot.org/uniprot">
    <accession>A9BUU6</accession>
    <name>A9BUU6_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Malonate decarboxylase, beta subunit</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_1766</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX34408.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012203693.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_1766"/>
    <dbReference type="PRIDE" id="A9BUU6"/>
    <dbReference type="EnsemblBacteria" id="ABX34408">
        <property type="protein sequence ID" value="ABX34408"/>
        <property type="gene ID" value="Daci_1766"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_1766"/>
    <dbReference type="eggNOG" id="COG4799">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_058025_0_0_4"/>
    <dbReference type="OMA" id="NGCFGGM"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009317">
        <property type="term" value="C:acetyl-CoA carboxylase complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003989">
        <property type="term" value="F:acetyl-CoA carboxylase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016831">
        <property type="term" value="F:carboxy-lyase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0044262">
        <property type="term" value="P:cellular carbohydrate metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006633">
        <property type="term" value="P:fatty acid biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR034733">
        <property type="entry name" value="AcCoA_carboxyl"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000438">
        <property type="entry name" value="Acetyl_CoA_COase_Trfase_b_su"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029045">
        <property type="entry name" value="ClpP/crotonase-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011762">
        <property type="entry name" value="COA_CT_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017556">
        <property type="entry name" value="Malonate_beta"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01039">
        <property type="entry name" value="Carboxyl_trans"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR01070">
        <property type="entry name" value="ACCCTRFRASEB"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52096">
        <property type="entry name" value="SSF52096"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR03133">
        <property type="entry name" value="malonate_beta"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50980">
        <property type="entry name" value="COA_CT_NTER"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="CoA carboxyltransferase N-terminal" evidence="1">
        <location>
            <begin position="1"/>
            <end position="236"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS50980"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX34408.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="305" mass="32039" checksum="52FE488ABAE0F82F" modified="2008-01-15" version="1">MISYAECTARERLAKLLDAASFHEWLPPSERLTSPHLAQLGVPSAFDDGVAIGRGLLGGRTVFVAAQEGEFMGGGVGEVHGAKLVGLLRRALLERPAAVLLLAESGGVRLHEANAGLIAVSEVMRALLDVRASGIPVVVLIGGANGCFGGMGIVARCADQVVMSDIGRLAMSGPEVIEASHGVDEFDARDRALVWRTTGGKHRWLCGDCDALVADDVEAFRAAAIAALDHSRPVSLEGLLQEHALLRARLDTLDALKAGSAIGPQDEAMRLWQALGVPDAWRVPDLDAAAVRALRTTPATGISQE</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="85" xmlns="http://uniprot.org/uniprot">
    <accession>A9BUV1</accession>
    <name>A9BUV1_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="2 6">Alkanesulfonate monooxygenase</fullName>
            <ecNumber evidence="2 6">1.14.14.5</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="6">FMNH2-dependent aliphatic sulfonate monooxygenase</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="6" type="primary">ssuD</name>
        <name evidence="8" type="ordered locus">Daci_1771</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="9" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="6">Catalyzes the desulfonation of aliphatic sulfonates.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="6">
            <text>an alkanesulfonate + FMNH2 + O2 = an aldehyde + FMN + 2 H(+) + H2O + sulfite</text>
            <dbReference type="Rhea" id="RHEA:23064"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:15379"/>
            <dbReference type="ChEBI" id="CHEBI:17359"/>
            <dbReference type="ChEBI" id="CHEBI:17478"/>
            <dbReference type="ChEBI" id="CHEBI:57618"/>
            <dbReference type="ChEBI" id="CHEBI:58210"/>
            <dbReference type="ChEBI" id="CHEBI:134249"/>
            <dbReference type="EC" id="1.14.14.5"/>
        </reaction>
    </comment>
    <comment type="similarity">
        <text evidence="1 6">Belongs to the SsuD family.</text>
    </comment>
    <dbReference type="EC" id="1.14.14.5" evidence="2 6"/>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX34413.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012203698.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_1771"/>
    <dbReference type="PRIDE" id="A9BUV1"/>
    <dbReference type="EnsemblBacteria" id="ABX34413">
        <property type="protein sequence ID" value="ABX34413"/>
        <property type="gene ID" value="Daci_1771"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_1771"/>
    <dbReference type="eggNOG" id="COG2141">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_027853_1_0_4"/>
    <dbReference type="OMA" id="FIVRETD"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008726">
        <property type="term" value="F:alkanesulfonate monooxygenase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.20.20.30">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01229">
        <property type="entry name" value="Alkanesulf_monooxygen"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019911">
        <property type="entry name" value="Alkanesulphonate_mOase_FMN-dep"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011251">
        <property type="entry name" value="Luciferase-like_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036661">
        <property type="entry name" value="Luciferase-like_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00296">
        <property type="entry name" value="Bac_luciferase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51679">
        <property type="entry name" value="SSF51679"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR03565">
        <property type="entry name" value="alk_sulf_monoox"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3 6" id="KW-0285">Flavoprotein</keyword>
    <keyword evidence="4 6" id="KW-0288">FMN</keyword>
    <keyword evidence="5 6 8" id="KW-0503">Monooxygenase</keyword>
    <keyword evidence="6 8" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Bac_luciferase" evidence="7">
        <location>
            <begin position="11"/>
            <end position="331"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00007044"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00012113"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022630"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022643"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023033"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01229"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="Pfam" id="PF00296"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="ABX34413.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="384" mass="41594" checksum="A6CB965959698FEE" modified="2008-01-15" version="1">MSQDPHASPDIFWFLPTSGDTRYLGTSDFGRAPTNAYMRQIAVTAEELGYDGLLIPTGSSCLDPWVVASSLVPVTQRIKLLVALRTSLGAPVSSARQAATLDQALGGRLLLNVVPGGDATELEADGIFLAHDERYAYADEFLTIWRRLLAGEAVDFDGKYFKVKQGRNFFPPVQKPHPPLYFGGSSDAAHDLAARQVDAYLTWGEPPAAVAEKFADIRRRAAQQGRQVRLGVRLHVIVRETNEEAWADAERLISKLTDEDIARAQAGYARMDSVGQSRMAALHGGRRDRLEVAPNLWAGVGLVRGGAGTALVGDAATVAERLREYAALGADSFVLSGYPHLEESIRFAELVFPLLGKRAVTTSDQAQTGGAFDIRSIQRSQSAS</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="60" xmlns="http://uniprot.org/uniprot">
    <accession>A9BUX3</accession>
    <name>A9BUX3_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Carboxymethylenebutenolidase</fullName>
            <ecNumber evidence="3">3.1.1.45</ecNumber>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Daci_1793</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="4" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EC" id="3.1.1.45" evidence="3"/>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX34435.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012203720.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_1793"/>
    <dbReference type="PRIDE" id="A9BUX3"/>
    <dbReference type="EnsemblBacteria" id="ABX34435">
        <property type="protein sequence ID" value="ABX34435"/>
        <property type="gene ID" value="Daci_1793"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_1793"/>
    <dbReference type="eggNOG" id="COG0412">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_032662_0_0_4"/>
    <dbReference type="OMA" id="FCFTHTT"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008806">
        <property type="term" value="F:carboxymethylenebutenolidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.1820">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029058">
        <property type="entry name" value="AB_hydrolase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002925">
        <property type="entry name" value="Dienelactn_hydro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR032710">
        <property type="entry name" value="NTF2-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037401">
        <property type="entry name" value="SnoaL-like"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01738">
        <property type="entry name" value="DLH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12680">
        <property type="entry name" value="SnoaL_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53474">
        <property type="entry name" value="SSF53474"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54427">
        <property type="entry name" value="SSF54427"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="DLH" evidence="1">
        <location>
            <begin position="23"/>
            <end position="237"/>
        </location>
    </feature>
    <feature type="domain" description="SnoaL-like" evidence="2">
        <location>
            <begin position="256"/>
            <end position="363"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF01738"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF12680"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ABX34435.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="411" mass="44990" checksum="B11DAFC2166B85D0" modified="2008-01-15" version="1">MQQKESPASRHVRINALDGSGSFNAYLAVPASGSGPGLVLAQEIFGVNATMREVADYYAEEGYVVLVPDLFWRQQPDVELGYTPADWERAFGFYKGFDEALGVQDIQACLNALRQRPEVTDGKAGVLGFCLGGKLAYLAACRTDADAVVGYYGVGIEAALDEAERIRCPLTLHVAELDAFCPPEARQRIVQALGGRPGVAVHVYPGVDHAFARKGGDHFHRASALMAHERSIATLKSAIGPHFDLAALWDKHCEYEFATRNVDDTMATMVAEPYVNHIPTMTGGVGFSNLHAFYTNHFVNSNPPDTSLTPISRTVGASQVVDEMLFCFTHTTEIPWMLPGVRPTGRRVEIPLLAVVKFRGDKLYHEHIYWDQASVLVQVGLLDPALLPVAGVETARKLLDETLPSNELLKR</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="79" xmlns="http://uniprot.org/uniprot">
    <accession>A9BV65</accession>
    <name>A9BV65_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Short-chain dehydrogenase/reductase SDR</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Daci_2089</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="2" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX34729.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012204012.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_2089"/>
    <dbReference type="PRIDE" id="A9BV65"/>
    <dbReference type="EnsemblBacteria" id="ABX34729">
        <property type="protein sequence ID" value="ABX34729"/>
        <property type="gene ID" value="Daci_2089"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_2089"/>
    <dbReference type="eggNOG" id="COG1028">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_010194_1_3_4"/>
    <dbReference type="OMA" id="QANLMTI"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016491">
        <property type="term" value="F:oxidoreductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036291">
        <property type="entry name" value="NAD(P)-bd_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020904">
        <property type="entry name" value="Sc_DH/Rdtase_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002347">
        <property type="entry name" value="SDR_fam"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00081">
        <property type="entry name" value="GDHRDH"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00080">
        <property type="entry name" value="SDRFAMILY"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51735">
        <property type="entry name" value="SSF51735"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00061">
        <property type="entry name" value="ADH_SHORT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ABX34729.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="252" mass="26168" checksum="60D14B053B1C2424" modified="2008-01-15" version="1">MNTSKPLDGRRAVVTGAGSGIGEAIALAYAQAGAQLLLADIDAARADSVARRCRALGAQAETVIGDVGDESTAHRIVDRCVQAFGGIDILVNNAGMLTQSRCADMSTAMWDEMLRVDLRSVFLCARRAVPHMQAQRWGRIINIASQLGIKGGVELSHYAAAKAGVIGFTKSLALEVAPDNVLVNAIAPGPIATPLVDGISADWKRAKEASLPLGRFGRADEVAPTAVLLASDPGGNLYVGQTLGPNSGDVMP</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="83" xmlns="http://uniprot.org/uniprot">
    <accession>A9BVA6</accession>
    <name>A9BVA6_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Putative transcriptional regulator, Crp/Fnr family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Daci_2130</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="4" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX34770.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_2130"/>
    <dbReference type="PRIDE" id="A9BVA6"/>
    <dbReference type="EnsemblBacteria" id="ABX34770">
        <property type="protein sequence ID" value="ABX34770"/>
        <property type="gene ID" value="Daci_2130"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_2130"/>
    <dbReference type="eggNOG" id="COG0664">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_093399_0_0_4"/>
    <dbReference type="OMA" id="AMPHEAG"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006355">
        <property type="term" value="P:regulation of transcription, DNA-templated"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.120.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018490">
        <property type="entry name" value="cNMP-bd-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012318">
        <property type="entry name" value="HTH_CRP"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014710">
        <property type="entry name" value="RmlC-like_jellyroll"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036390">
        <property type="entry name" value="WH_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13545">
        <property type="entry name" value="HTH_Crp_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00419">
        <property type="entry name" value="HTH_CRP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46785">
        <property type="entry name" value="SSF46785"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51206">
        <property type="entry name" value="SSF51206"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51063">
        <property type="entry name" value="HTH_CRP_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HTH crp-type" evidence="2">
        <location>
            <begin position="114"/>
            <end position="184"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS51063"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ABX34770.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="192" mass="21107" checksum="046DAD7B3C283612" modified="2008-01-15" version="1">MAAGTWLRLRRQSPDTVMYLERGRVLLGIGQGGQMRHQLGVVEGPAWLDAAFVLQRRGSSLDMLADSDVRVQQLPQTDFLKAVSQLPPPAQQLLQDMAQAYCAQTELAVSRLSKDAEARCAQWLLRHAMPHEAGGLRVTLHLRKRLIAAQLGIAPETFSRVLRQLREHGLIAGRGNVIDLPKPAALEVLAVG</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="58" xmlns="http://uniprot.org/uniprot">
    <accession>A9BVT9</accession>
    <name>A9BVT9_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Class II aldolase/adducin family protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_2814</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX35452.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012204662.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_2814"/>
    <dbReference type="PRIDE" id="A9BVT9"/>
    <dbReference type="EnsemblBacteria" id="ABX35452">
        <property type="protein sequence ID" value="ABX35452"/>
        <property type="gene ID" value="Daci_2814"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_2814"/>
    <dbReference type="eggNOG" id="COG0235">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_006033_3_2_4"/>
    <dbReference type="OMA" id="ICRYGRS"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.225.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001303">
        <property type="entry name" value="Aldolase_II/adducin_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036409">
        <property type="entry name" value="Aldolase_II/adducin_N_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00596">
        <property type="entry name" value="Aldolase_II"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM01007">
        <property type="entry name" value="Aldolase_II"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53639">
        <property type="entry name" value="SSF53639"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Aldolase_II" evidence="1">
        <location>
            <begin position="9"/>
            <end position="187"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="SMART" id="SM01007"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX35452.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="212" mass="23219" checksum="DE9131A4761BEECA" modified="2008-01-15" version="1">MSDESRIREQICATGASLFQRGYTVGAAGNISARLHDGWLITPTDACLGRLDPAELSKVDAGGQWVSGAKPSKTLVLHRGIYGNDGEARAVIHTHSTHLVALTLSGVWREDEVLPPITPYQVMKVGRIPLIRYRRPGDPQAAAEVAAQAAQVRGALFERLGPVVWERSVEQASHVLEELEETARLWLMTHPRPQPLDAAAIDELRTTFGARY</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="79" xmlns="http://uniprot.org/uniprot">
    <accession>A9BW98</accession>
    <name>A9BW98_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="11">TonB-dependent siderophore receptor</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="11" type="ordered locus">Daci_3276</name>
    </gene>
    <organism evidence="11 12">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="11 12" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="12">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="12" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="12">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="8">Cell outer membrane</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="1 8">Belongs to the TonB-dependent receptor family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX35914.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012205114.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_3276"/>
    <dbReference type="PRIDE" id="A9BW98"/>
    <dbReference type="EnsemblBacteria" id="ABX35914">
        <property type="protein sequence ID" value="ABX35914"/>
        <property type="gene ID" value="Daci_3276"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_3276"/>
    <dbReference type="eggNOG" id="COG4773">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_008287_9_3_4"/>
    <dbReference type="OMA" id="GRLDWYD"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009279">
        <property type="term" value="C:cell outer membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015344">
        <property type="term" value="F:siderophore uptake transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0038023">
        <property type="term" value="F:signaling receptor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.170.130.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.170.20">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012910">
        <property type="entry name" value="Plug_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037066">
        <property type="entry name" value="Plug_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011662">
        <property type="entry name" value="Secretin/TonB_short_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR039423">
        <property type="entry name" value="TonB-dep_rcpt"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000531">
        <property type="entry name" value="TonB-dep_rcpt_b-brl"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036942">
        <property type="entry name" value="TonB_rcpt_b-brl_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010105">
        <property type="entry name" value="TonB_sidphr_rcpt"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR32552">
        <property type="entry name" value="PTHR32552"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07715">
        <property type="entry name" value="Plug"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07660">
        <property type="entry name" value="STN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00593">
        <property type="entry name" value="TonB_dep_Rec"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00965">
        <property type="entry name" value="STN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01783">
        <property type="entry name" value="TonB-siderophor"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="7" id="KW-0998">Cell outer membrane</keyword>
    <keyword evidence="5 8" id="KW-0472">Membrane</keyword>
    <keyword evidence="6 11" id="KW-0675">Receptor</keyword>
    <keyword evidence="12" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0732">Signal</keyword>
    <keyword evidence="4 8" id="KW-0798">TonB box</keyword>
    <keyword evidence="2" id="KW-0813">Transport</keyword>
    <feature type="domain" description="STN" evidence="10">
        <location>
            <begin position="91"/>
            <end position="142"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="9">
        <location>
            <begin position="1"/>
            <end position="22"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="9">
        <location>
            <begin position="1"/>
            <end position="21"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00009810"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022448"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022729"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023077"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023170"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023237"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="RuleBase" id="RU003357"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="10">
        <source>
            <dbReference type="SMART" id="SM00965"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="EMBL" id="ABX35914.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="840" mass="89940" checksum="E8A240D129F22BC3" modified="2008-01-15" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="76" xmlns="http://uniprot.org/uniprot">
    <accession>A9BWV6</accession>
    <name>A9BWV6_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="10">Electron transfer flavoprotein-ubiquinone oxidoreductase</fullName>
            <shortName evidence="10">ETF-QO</shortName>
            <ecNumber evidence="10">1.5.5.1</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="12" type="ordered locus">Daci_4310</name>
    </gene>
    <organism evidence="12 13">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="12 13" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="13">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="13" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="13">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="2 10">Accepts electrons from ETF and reduces ubiquinone.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="10">
            <text>a ubiquinone + reduced [electron-transfer flavoprotein] = a ubiquinol + H(+) + oxidized [electron-transfer flavoprotein]</text>
            <dbReference type="Rhea" id="RHEA:24052"/>
            <dbReference type="Rhea" id="RHEA-COMP:9565"/>
            <dbReference type="Rhea" id="RHEA-COMP:9566"/>
            <dbReference type="Rhea" id="RHEA-COMP:10685"/>
            <dbReference type="Rhea" id="RHEA-COMP:10686"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:16389"/>
            <dbReference type="ChEBI" id="CHEBI:17976"/>
            <dbReference type="ChEBI" id="CHEBI:57692"/>
            <dbReference type="ChEBI" id="CHEBI:58307"/>
            <dbReference type="EC" id="1.5.5.1"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="1 10">
            <name>FAD</name>
            <dbReference type="ChEBI" id="CHEBI:57692"/>
        </cofactor>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="10">
            <name>[4Fe-4S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:49883"/>
        </cofactor>
        <text evidence="10">Binds 1 [4Fe-4S] cluster.</text>
    </comment>
    <dbReference type="EC" id="1.5.5.1" evidence="10"/>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX36941.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012206113.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_4310"/>
    <dbReference type="PRIDE" id="A9BWV6"/>
    <dbReference type="EnsemblBacteria" id="ABX36941">
        <property type="protein sequence ID" value="ABX36941"/>
        <property type="gene ID" value="Daci_4310"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_4310"/>
    <dbReference type="eggNOG" id="COG0644">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="eggNOG" id="COG2440">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_009667_4_1_4"/>
    <dbReference type="OMA" id="LLEYGCH"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051539">
        <property type="term" value="F:4 iron, 4 sulfur cluster binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004174">
        <property type="term" value="F:electron-transferring-flavoprotein dehydrogenase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.50.50.60">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017896">
        <property type="entry name" value="4Fe4S_Fe-S-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR040156">
        <property type="entry name" value="ETF-QO"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036188">
        <property type="entry name" value="FAD/NAD-bd_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10617">
        <property type="entry name" value="PTHR10617"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51905">
        <property type="entry name" value="SSF51905"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51379">
        <property type="entry name" value="4FE4S_FER_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="6 10" id="KW-0249">Electron transport</keyword>
    <keyword evidence="5 10" id="KW-0274">FAD</keyword>
    <keyword evidence="4 10" id="KW-0285">Flavoprotein</keyword>
    <keyword evidence="10" id="KW-0408">Iron</keyword>
    <keyword evidence="8 10" id="KW-0411">Iron-sulfur</keyword>
    <keyword evidence="10" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="7 10 12" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="13" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 10" id="KW-0813">Transport</keyword>
    <keyword evidence="9 10" id="KW-0830">Ubiquinone</keyword>
    <feature type="domain" description="4Fe-4S ferredoxin-type" evidence="11">
        <location>
            <begin position="526"/>
            <end position="555"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001974"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00002819"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022448"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022630"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022827"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022982"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023002"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00023014"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00023075"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="RuleBase" id="RU366068"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="11">
        <source>
            <dbReference type="PROSITE" id="PS51379"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="EMBL" id="ABX36941.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="13">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="566" mass="61492" checksum="8858ED528516A61B" modified="2008-01-15" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="59" xmlns="http://uniprot.org/uniprot">
    <accession>A9BXB5</accession>
    <name>A9BXB5_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="3">3-oxoacid CoA-transferase, B subunit</fullName>
            <ecNumber evidence="3">2.8.3.6</ecNumber>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Daci_5562</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="4" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the 3-oxoacid CoA-transferase subunit B family.</text>
    </comment>
    <dbReference type="EC" id="2.8.3.6" evidence="3"/>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX38191.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012207360.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_5562"/>
    <dbReference type="PRIDE" id="A9BXB5"/>
    <dbReference type="EnsemblBacteria" id="ABX38191">
        <property type="protein sequence ID" value="ABX38191"/>
        <property type="gene ID" value="Daci_5562"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_5562"/>
    <dbReference type="eggNOG" id="COG2057">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_019942_4_1_4"/>
    <dbReference type="OMA" id="ANWRVGS"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0047569">
        <property type="term" value="F:3-oxoadipate CoA-transferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012791">
        <property type="entry name" value="3-oxoacid_CoA-transf_B"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004165">
        <property type="entry name" value="CoA_trans_fam_I"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004164">
        <property type="entry name" value="CoA_transf_AS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037171">
        <property type="entry name" value="NagB/RpiA_transferase-like"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR13707">
        <property type="entry name" value="PTHR13707"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01144">
        <property type="entry name" value="CoA_trans"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00882">
        <property type="entry name" value="CoA_trans"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF100950">
        <property type="entry name" value="SSF100950"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR02428">
        <property type="entry name" value="pcaJ_scoB_fam"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01274">
        <property type="entry name" value="COA_TRANSF_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 3" id="KW-0808">Transferase</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00007047"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ABX38191.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="229" mass="24103" checksum="FE26FDDAFE8B374A" modified="2008-01-15" version="1">MSAPTAESKSMSSYQKRSKQELARRVAEDIFDGAYVNLGIGMPTQVANHIPAGREVILQSENGILGMGPAPAEGQEDYDLTNAGKQPVTLLPGGCYFHHADSFAMMRGGHLDICVLGAFQVSATGDLANWSTGEAGAIPAVGGAMDLAVGARQTWVMMDLLTKTGECKVVEACSYPLTGLSCVKRIYTDLCTLECTPEGLRLIDTVPGLSHAELQSIVGLPIKDATATA</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="60" xmlns="http://uniprot.org/uniprot">
    <accession>A9BXD2</accession>
    <name>A9BXD2_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Pilus assembly protein PilO</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Daci_5579</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="4" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX38208.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012207377.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_5579"/>
    <dbReference type="PRIDE" id="A9BXD2"/>
    <dbReference type="EnsemblBacteria" id="ABX38208">
        <property type="protein sequence ID" value="ABX38208"/>
        <property type="gene ID" value="Daci_5579"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_5579"/>
    <dbReference type="eggNOG" id="COG3167">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_102444_1_0_4"/>
    <dbReference type="OMA" id="TARTFRY"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043683">
        <property type="term" value="P:type IV pilus assembly"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043107">
        <property type="term" value="P:type IV pilus-dependent motility"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.70.60">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007445">
        <property type="entry name" value="PilO"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014717">
        <property type="entry name" value="Transl_elong_EF1B/ribosomal_S6"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04350">
        <property type="entry name" value="PilO"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF016482">
        <property type="entry name" value="PilO"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="2" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="2" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="35"/>
            <end position="57"/>
        </location>
    </feature>
    <feature type="coiled-coil region" evidence="1">
        <location>
            <begin position="58"/>
            <end position="109"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ABX38208.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="225" mass="25150" checksum="1099AAA8E8EDB166" modified="2008-01-15" version="1">MAKKKKNDIDFSALQENIQRQFRGLDPNDPSRWPVLPRTLLCVAIALAVAAVLWYVLIKDYEDTLEQERNTEVTLRQDFSQKLSKAVSLDGLKKQREQVQQYVTQLEKQLPSKAEMAALLSDINQAGLGRSLQFETFRPGAMVVKEYYAELPIALKVTGRFHDIGSFASDVAYLSRIVTLNNLSIAPVGKEGGEVLSMEATARTFRYLDADEVQAQRAAAGKGKK</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="72" xmlns="http://uniprot.org/uniprot">
    <accession>A9BXE2</accession>
    <name>A9BXE2_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="8">Cytochrome c class I</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="8" type="ordered locus">Daci_5589</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="9" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="PTM">
        <text evidence="4">Binds 2 heme c groups covalently per subunit.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX38218.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_5589"/>
    <dbReference type="PRIDE" id="A9BXE2"/>
    <dbReference type="EnsemblBacteria" id="ABX38218">
        <property type="protein sequence ID" value="ABX38218"/>
        <property type="gene ID" value="Daci_5589"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_5589"/>
    <dbReference type="eggNOG" id="COG2863">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_076280_2_0_4"/>
    <dbReference type="OMA" id="AGCHSPN"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0042597">
        <property type="term" value="C:periplasmic space"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009055">
        <property type="term" value="F:electron transfer activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0020037">
        <property type="term" value="F:heme binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005506">
        <property type="term" value="F:iron ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.760.10">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009056">
        <property type="entry name" value="Cyt_c-like_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036909">
        <property type="entry name" value="Cyt_c-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008168">
        <property type="entry name" value="Cyt_C_IC"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR024167">
        <property type="entry name" value="Cytochrome_c4-like"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00034">
        <property type="entry name" value="Cytochrom_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13442">
        <property type="entry name" value="Cytochrome_CBB3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF000005">
        <property type="entry name" value="Cytochrome_c4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00605">
        <property type="entry name" value="CYTCHROMECIC"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46626">
        <property type="entry name" value="SSF46626"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51007">
        <property type="entry name" value="CYTC"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1 4 6" id="KW-0349">Heme</keyword>
    <keyword evidence="3 5 6" id="KW-0408">Iron</keyword>
    <keyword evidence="2 5 6" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Cytochrome c" evidence="7">
        <location>
            <begin position="78"/>
            <end position="157"/>
        </location>
    </feature>
    <feature type="domain" description="Cytochrome c" evidence="7">
        <location>
            <begin position="167"/>
            <end position="255"/>
        </location>
    </feature>
    <feature type="binding site" description="covalent" evidence="4">
        <location>
            <position position="91"/>
        </location>
        <ligand>
            <name>heme</name>
            <dbReference type="ChEBI" id="CHEBI:30413"/>
            <label>1</label>
        </ligand>
    </feature>
    <feature type="binding site" description="covalent" evidence="4">
        <location>
            <position position="94"/>
        </location>
        <ligand>
            <name>heme</name>
            <dbReference type="ChEBI" id="CHEBI:30413"/>
            <label>1</label>
        </ligand>
    </feature>
    <feature type="binding site" description="axial binding residue" evidence="5">
        <location>
            <position position="95"/>
        </location>
        <ligand>
            <name>heme c</name>
            <dbReference type="ChEBI" id="CHEBI:61717"/>
            <label>1</label>
        </ligand>
        <ligandPart>
            <name>Fe</name>
            <dbReference type="ChEBI" id="CHEBI:18248"/>
        </ligandPart>
    </feature>
    <feature type="binding site" description="axial binding residue" evidence="5">
        <location>
            <position position="134"/>
        </location>
        <ligand>
            <name>heme c</name>
            <dbReference type="ChEBI" id="CHEBI:61717"/>
            <label>1</label>
        </ligand>
        <ligandPart>
            <name>Fe</name>
            <dbReference type="ChEBI" id="CHEBI:18248"/>
        </ligandPart>
    </feature>
    <feature type="binding site" description="covalent" evidence="4">
        <location>
            <position position="188"/>
        </location>
        <ligand>
            <name>heme c</name>
            <dbReference type="ChEBI" id="CHEBI:61717"/>
            <label>2</label>
        </ligand>
    </feature>
    <feature type="binding site" description="covalent" evidence="4">
        <location>
            <position position="191"/>
        </location>
        <ligand>
            <name>heme c</name>
            <dbReference type="ChEBI" id="CHEBI:61717"/>
            <label>2</label>
        </ligand>
    </feature>
    <feature type="binding site" description="axial binding residue" evidence="5">
        <location>
            <position position="192"/>
        </location>
        <ligand>
            <name>heme c</name>
            <dbReference type="ChEBI" id="CHEBI:61717"/>
            <label>2</label>
        </ligand>
        <ligandPart>
            <name>Fe</name>
            <dbReference type="ChEBI" id="CHEBI:18248"/>
        </ligandPart>
    </feature>
    <feature type="binding site" description="axial binding residue" evidence="5">
        <location>
            <position position="232"/>
        </location>
        <ligand>
            <name>heme c</name>
            <dbReference type="ChEBI" id="CHEBI:61717"/>
            <label>2</label>
        </ligand>
        <ligandPart>
            <name>Fe</name>
            <dbReference type="ChEBI" id="CHEBI:18248"/>
        </ligandPart>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022617"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023004"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="PIRSR" id="PIRSR000005-1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="PIRSR" id="PIRSR000005-2"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00433"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="PROSITE" id="PS51007"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="ABX38218.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="255" mass="27553" checksum="7B8C929EA4169C75" modified="2008-01-15" version="1">MFSSVRRGETRVPDDINHRGPHCRIRRILRFQQQNHALDMKLLASLLTAAILAAAPAFPAFSAGEAPAAPAQPKAAKADLAKGEASYTAVCAACHAADGNSTIPLQPKLAGQHPEYLVKQLLEFKGDKRKDPVMKGFASMLSEPDMKNIAAWLHTQKPKDGFAKDKDLVAMGERIYRGGIQERNIAACAGCHSPNGAGIPAQYPRLAGQHADYTTTQLTAFRDGKRGNSIQMTQVAAKLNDREIKAVADYIAGLR</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="72" xmlns="http://uniprot.org/uniprot">
    <accession>A9BXE5</accession>
    <name>A9BXE5_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Mannitol dehydrogenase domain</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ordered locus">Daci_5592</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="5" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX38221.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012207390.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_5592"/>
    <dbReference type="PRIDE" id="A9BXE5"/>
    <dbReference type="EnsemblBacteria" id="ABX38221">
        <property type="protein sequence ID" value="ABX38221"/>
        <property type="gene ID" value="Daci_5592"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_5592"/>
    <dbReference type="eggNOG" id="COG0246">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_027324_0_2_4"/>
    <dbReference type="OMA" id="WGSENTE"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016491">
        <property type="term" value="F:oxidoreductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.1040.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008927">
        <property type="entry name" value="6-PGluconate_DH-like_C_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013328">
        <property type="entry name" value="6PGD_dom2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000669">
        <property type="entry name" value="Mannitol_DH"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013118">
        <property type="entry name" value="Mannitol_DH_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013131">
        <property type="entry name" value="Mannitol_DH_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036291">
        <property type="entry name" value="NAD(P)-bd_dom_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01232">
        <property type="entry name" value="Mannitol_dh"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08125">
        <property type="entry name" value="Mannitol_dh_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00084">
        <property type="entry name" value="MTLDHDRGNASE"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48179">
        <property type="entry name" value="SSF48179"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51735">
        <property type="entry name" value="SSF51735"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0520">NAD</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Mannitol_dh" evidence="2">
        <location>
            <begin position="12"/>
            <end position="177"/>
        </location>
    </feature>
    <feature type="domain" description="Mannitol_dh_C" evidence="3">
        <location>
            <begin position="207"/>
            <end position="446"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023027"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF01232"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF08125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="ABX38221.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="474" mass="51172" checksum="502F234ADBF259EF" modified="2008-01-15" version="1">MNAIVPHLSRPTVLHLGLGSFHRAHQAAYQQRLIDAGDTQWELVGANLRSDMAQTLEALARQGGAYTLETIAPGGSVRYQRIEALREVIPHAPGLAAVIARGASPCTRVISLTVTEAGYYLDGSGVLDTGSPELAADIGRMRQGQAGETIYGVLCAILQLRRCAHAGPVTLLSCDNLRHNGDRLLAGLLAFMQLAQLQELAEWAGHNISCPNAMVDRITPRPPPELRERVQAATGWDDAAAVTAESFSQWVIEDRFVAGRPPWERVGVEMVSSVAPYEEAKIRILNASHSCIAWAGTLAGLRFIHEGSAVPAIRQMAWDYVTQDVIPCLATPGKASALDLPAYRDTVLERFGNPAIRDTNQRVAADGFAKIPGFIAPTVRERIAQGASMDAVAMLPALFLVFLQRWHHDTLPYAYQDQAMDSAVAHAICAAADPVAALCAEVPLWGEAAGHPHLVEAVRRATDRVHAFVQQAAR</sequence>
</entry>
<entry dataset="Swiss-Prot" created="2009-03-24" modified="2022-08-03" version="76" xmlns="http://uniprot.org/uniprot">
    <accession>A9BXF7</accession>
    <name>METK_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">S-adenosylmethionine synthase</fullName>
            <shortName evidence="1">AdoMet synthase</shortName>
            <ecNumber evidence="1">2.5.1.6</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="1">MAT</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="1">Methionine adenosyltransferase</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="1" type="primary">metK</name>
        <name type="ordered locus">Daci_5604</name>
    </gene>
    <organism>
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference key="1">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain>DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="1">Catalyzes the formation of S-adenosylmethionine (AdoMet) from methionine and ATP. The overall synthetic reaction is composed of two sequential steps, AdoMet formation and the subsequent tripolyphosphate hydrolysis which occurs prior to release of AdoMet from the enzyme.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>ATP + H2O + L-methionine = diphosphate + phosphate + S-adenosyl-L-methionine</text>
            <dbReference type="Rhea" id="RHEA:21080"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:33019"/>
            <dbReference type="ChEBI" id="CHEBI:43474"/>
            <dbReference type="ChEBI" id="CHEBI:57844"/>
            <dbReference type="ChEBI" id="CHEBI:59789"/>
            <dbReference type="EC" id="2.5.1.6"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </cofactor>
        <text evidence="1">Binds 2 divalent ions per subunit.</text>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>K(+)</name>
            <dbReference type="ChEBI" id="CHEBI:29103"/>
        </cofactor>
        <text evidence="1">Binds 1 potassium ion per subunit.</text>
    </comment>
    <comment type="pathway">
        <text evidence="1">Amino-acid biosynthesis; S-adenosyl-L-methionine biosynthesis; S-adenosyl-L-methionine from L-methionine: step 1/1.</text>
    </comment>
    <comment type="subunit">
        <text evidence="1">Homotetramer; dimer of dimers.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="1">Belongs to the AdoMet synthase family.</text>
    </comment>
    <dbReference type="EC" id="2.5.1.6" evidence="1"/>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX38233.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012207402.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A9BXF7"/>
    <dbReference type="SMR" id="A9BXF7"/>
    <dbReference type="STRING" id="398578.Daci_5604"/>
    <dbReference type="PRIDE" id="A9BXF7"/>
    <dbReference type="EnsemblBacteria" id="ABX38233">
        <property type="protein sequence ID" value="ABX38233"/>
        <property type="gene ID" value="Daci_5604"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_5604"/>
    <dbReference type="eggNOG" id="COG0192">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_041802_1_1_4"/>
    <dbReference type="OMA" id="MPYLRPD"/>
    <dbReference type="UniPathway" id="UPA00315">
        <property type="reaction ID" value="UER00080"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000287">
        <property type="term" value="F:magnesium ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004478">
        <property type="term" value="F:methionine adenosyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006730">
        <property type="term" value="P:one-carbon metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006556">
        <property type="term" value="P:S-adenosylmethionine biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniPathway"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00086">
        <property type="entry name" value="S_AdoMet_synth1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR022631">
        <property type="entry name" value="ADOMET_SYNTHASE_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR022630">
        <property type="entry name" value="S-AdoMet_synt_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR022629">
        <property type="entry name" value="S-AdoMet_synt_central"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR022628">
        <property type="entry name" value="S-AdoMet_synt_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002133">
        <property type="entry name" value="S-AdoMet_synthetase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR022636">
        <property type="entry name" value="S-AdoMet_synthetase_sfam"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11964">
        <property type="entry name" value="PTHR11964"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02773">
        <property type="entry name" value="S-AdoMet_synt_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02772">
        <property type="entry name" value="S-AdoMet_synt_M"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00438">
        <property type="entry name" value="S-AdoMet_synt_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF000497">
        <property type="entry name" value="MAT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55973">
        <property type="entry name" value="SSF55973"/>
        <property type="match status" value="3"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01034">
        <property type="entry name" value="metK"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00376">
        <property type="entry name" value="ADOMET_SYNTHASE_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00377">
        <property type="entry name" value="ADOMET_SYNTHASE_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword id="KW-0067">ATP-binding</keyword>
    <keyword id="KW-0963">Cytoplasm</keyword>
    <keyword id="KW-0460">Magnesium</keyword>
    <keyword id="KW-0479">Metal-binding</keyword>
    <keyword id="KW-0547">Nucleotide-binding</keyword>
    <keyword id="KW-0554">One-carbon metabolism</keyword>
    <keyword id="KW-0630">Potassium</keyword>
    <keyword id="KW-1185">Reference proteome</keyword>
    <keyword id="KW-0808">Transferase</keyword>
    <feature type="chain" id="PRO_1000093044" description="S-adenosylmethionine synthase">
        <location>
            <begin position="1"/>
            <end position="393"/>
        </location>
    </feature>
    <feature type="region of interest" description="Flexible loop" evidence="1">
        <location>
            <begin position="100"/>
            <end position="110"/>
        </location>
    </feature>
    <feature type="binding site" description="in other chain" evidence="1">
        <location>
            <position position="16"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <note>ligand shared between two neighboring subunits</note>
        </ligand>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <position position="18"/>
        </location>
        <ligand>
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <position position="44"/>
        </location>
        <ligand>
            <name>K(+)</name>
            <dbReference type="ChEBI" id="CHEBI:29103"/>
        </ligand>
    </feature>
    <feature type="binding site" description="in other chain" evidence="1">
        <location>
            <position position="57"/>
        </location>
        <ligand>
            <name>L-methionine</name>
            <dbReference type="ChEBI" id="CHEBI:57844"/>
            <note>ligand shared between two neighboring subunits</note>
        </ligand>
    </feature>
    <feature type="binding site" description="in other chain" evidence="1">
        <location>
            <position position="100"/>
        </location>
        <ligand>
            <name>L-methionine</name>
            <dbReference type="ChEBI" id="CHEBI:57844"/>
            <note>ligand shared between two neighboring subunits</note>
        </ligand>
    </feature>
    <feature type="binding site" description="in other chain" evidence="1">
        <location>
            <begin position="167"/>
            <end position="169"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <note>ligand shared between two neighboring subunits</note>
        </ligand>
    </feature>
    <feature type="binding site" description="in other chain" evidence="1">
        <location>
            <begin position="238"/>
            <end position="239"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <note>ligand shared between two neighboring subunits</note>
        </ligand>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <position position="247"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <note>ligand shared between two neighboring subunits</note>
        </ligand>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <position position="247"/>
        </location>
        <ligand>
            <name>L-methionine</name>
            <dbReference type="ChEBI" id="CHEBI:57844"/>
            <note>ligand shared between two neighboring subunits</note>
        </ligand>
    </feature>
    <feature type="binding site" description="in other chain" evidence="1">
        <location>
            <begin position="253"/>
            <end position="254"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <note>ligand shared between two neighboring subunits</note>
        </ligand>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <position position="270"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <note>ligand shared between two neighboring subunits</note>
        </ligand>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <position position="274"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <note>ligand shared between two neighboring subunits</note>
        </ligand>
    </feature>
    <feature type="binding site" description="in other chain" evidence="1">
        <location>
            <position position="278"/>
        </location>
        <ligand>
            <name>L-methionine</name>
            <dbReference type="ChEBI" id="CHEBI:57844"/>
            <note>ligand shared between two neighboring subunits</note>
        </ligand>
    </feature>
    <evidence type="ECO:0000255" key="1">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00086"/>
        </source>
    </evidence>
    <sequence length="393" mass="42589" checksum="3AAA8D1364EE230E" modified="2008-01-15" version="1">MANDFLFTSESVSEGHPDKVADQISDAILDAIFAQDPYSRVAAETLTNTGLVVLAGEITTGANVDYIQVARDTIKRIGYDNTDYGIDYKGCAVLVAYDKQSQDIAQGVDKASDDELNTGAGDQGLMFGYACDETPELMPAPIYYAHRLVERQAQLRKDGRLPFLRPDAKSQVTMRYVDGKPHSIDTVVLSTQHSPDQSETATKMKASFTEAIIEEIIKPVLPSEWLQDTKYLINPTGRFVVGGPQGDCGLTGRKIIVDTYGGACPHGGGAFSGKDPTKVDRSAAYAARYVAKNIVAAGLARQCQIQVAYAIGVARPMNITVYTEGTGVIPDAEIAKLVAAHFDLRPKGIIQMLDLLRPIYSKTAAYGHFGREEPEFTWERTDKAAVLRAAAGL</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="66" xmlns="http://uniprot.org/uniprot">
    <accession>A9BXI8</accession>
    <name>A9BXI8_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_5635</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX38264.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012207433.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_5635"/>
    <dbReference type="PRIDE" id="A9BXI8"/>
    <dbReference type="EnsemblBacteria" id="ABX38264">
        <property type="protein sequence ID" value="ABX38264"/>
        <property type="gene ID" value="Daci_5635"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_5635"/>
    <dbReference type="eggNOG" id="COG0111">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_019796_1_0_4"/>
    <dbReference type="OMA" id="WIIALER"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051287">
        <property type="term" value="F:NAD binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006140">
        <property type="entry name" value="D-isomer_DH_NAD-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036291">
        <property type="entry name" value="NAD(P)-bd_dom_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02826">
        <property type="entry name" value="2-Hacid_dh_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51735">
        <property type="entry name" value="SSF51735"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="2-Hacid_dh_C" evidence="1">
        <location>
            <begin position="117"/>
            <end position="288"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF02826"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX38264.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="323" mass="34629" checksum="B23F9DF8CBC9D306" modified="2008-01-15" version="1">MSGSLSPRASLPPLPFVCAPGYPAAQAWLQALQAALPEERVVALDTLDADQRAACEVAIVANPQPADLRTLPRLQWVHSVWAGVERLVADLGDTDLRIVRLVDPQLADTMAEAVLAWTLYLHRDMPRYARQQAARQWLAHDGVRAQDRTVSLLGLGALGKAAAQRLLSAGFQVRGWSRTPRHMDGVQCHAGDAELPAMLAQTDILVCLLPLTPQTRGLVGAQALAALPAHASLINFARGPIVDDAALRAALDGGRLAHAVLDVFEQEPLPEASWQWAHPAVTVLPHISAPTDRATASAIVAGNIRRWRASGELPQAVDAARGY</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="104" xmlns="http://uniprot.org/uniprot">
    <accession>A9BXW6</accession>
    <name>A9BXW6_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="11">Multifunctional CCA protein</fullName>
        </recommendedName>
        <domain>
            <recommendedName>
                <fullName evidence="11">CCA-adding enzyme</fullName>
                <ecNumber evidence="11">2.7.7.72</ecNumber>
            </recommendedName>
            <alternativeName>
                <fullName evidence="11">CCA tRNA nucleotidyltransferase</fullName>
            </alternativeName>
            <alternativeName>
                <fullName evidence="11">tRNA CCA-pyrophosphorylase</fullName>
            </alternativeName>
            <alternativeName>
                <fullName evidence="11">tRNA adenylyl-/cytidylyl-transferase</fullName>
            </alternativeName>
            <alternativeName>
                <fullName evidence="11">tRNA nucleotidyltransferase</fullName>
            </alternativeName>
            <alternativeName>
                <fullName evidence="11">tRNA-NT</fullName>
            </alternativeName>
        </domain>
        <domain>
            <recommendedName>
                <fullName evidence="11">2'-nucleotidase</fullName>
                <ecNumber evidence="11">3.1.3.-</ecNumber>
            </recommendedName>
        </domain>
        <domain>
            <recommendedName>
                <fullName evidence="11">2',3'-cyclic phosphodiesterase</fullName>
                <ecNumber evidence="11">3.1.4.-</ecNumber>
            </recommendedName>
        </domain>
        <domain>
            <recommendedName>
                <fullName evidence="11">Phosphatase</fullName>
            </recommendedName>
        </domain>
    </protein>
    <gene>
        <name evidence="11" type="primary">cca</name>
        <name evidence="13" type="ordered locus">Daci_1257</name>
    </gene>
    <organism evidence="13 14">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="13 14" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="14">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="14" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="14">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="11">Catalyzes the addition and repair of the essential 3'-terminal CCA sequence in tRNAs without using a nucleic acid template. Adds these three nucleotides in the order of C, C, and A to the tRNA nucleotide-73, using CTP and ATP as substrates and producing inorganic pyrophosphate. Also shows phosphatase, 2'-nucleotidase and 2',3'-cyclic phosphodiesterase activities. These phosphohydrolase activities are probably involved in the repair of the tRNA 3'-CCA terminus degraded by intracellular RNases.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="11">
            <text>a tRNA precursor + ATP + 2 CTP = a tRNA with a 3' CCA end + 3 diphosphate</text>
            <dbReference type="Rhea" id="RHEA:14433"/>
            <dbReference type="Rhea" id="RHEA-COMP:10465"/>
            <dbReference type="Rhea" id="RHEA-COMP:10468"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:33019"/>
            <dbReference type="ChEBI" id="CHEBI:37563"/>
            <dbReference type="ChEBI" id="CHEBI:74896"/>
            <dbReference type="ChEBI" id="CHEBI:83071"/>
            <dbReference type="EC" id="2.7.7.72"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="11">
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </cofactor>
        <text evidence="11">Magnesium is required for nucleotidyltransferase activity.</text>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="11">
            <name>Ni(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:49786"/>
        </cofactor>
        <text evidence="11">Nickel for phosphatase activity.</text>
    </comment>
    <comment type="subunit">
        <text evidence="11">Monomer. Can also form homodimers and oligomers.</text>
    </comment>
    <comment type="domain">
        <text evidence="11">Comprises two domains: an N-terminal domain containing the nucleotidyltransferase activity and a C-terminal HD domain associated with both phosphodiesterase and phosphatase activities.</text>
    </comment>
    <comment type="miscellaneous">
        <text evidence="11">A single active site specifically recognizes both ATP and CTP and is responsible for their addition.</text>
    </comment>
    <comment type="similarity">
        <text evidence="11">Belongs to the tRNA nucleotidyltransferase/poly(A) polymerase family. Bacterial CCA-adding enzyme type 1 subfamily.</text>
    </comment>
    <dbReference type="EC" id="2.7.7.72" evidence="11"/>
    <dbReference type="EC" id="3.1.3.-" evidence="11"/>
    <dbReference type="EC" id="3.1.4.-" evidence="11"/>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX33901.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012203187.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_1257"/>
    <dbReference type="PRIDE" id="A9BXW6"/>
    <dbReference type="EnsemblBacteria" id="ABX33901">
        <property type="protein sequence ID" value="ABX33901"/>
        <property type="gene ID" value="Daci_1257"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_1257"/>
    <dbReference type="eggNOG" id="COG0617">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_015961_1_1_4"/>
    <dbReference type="OMA" id="GWTFHGH"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0052929">
        <property type="term" value="F:ATP:3'-cytidine-cytidine-tRNA adenylyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0052928">
        <property type="term" value="F:CTP:3'-cytidine-tRNA cytidylyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0052927">
        <property type="term" value="F:CTP:tRNA cytidylyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004112">
        <property type="term" value="F:cyclic-nucleotide phosphodiesterase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000287">
        <property type="term" value="F:magnesium ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016791">
        <property type="term" value="F:phosphatase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000049">
        <property type="term" value="F:tRNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016437">
        <property type="term" value="F:tRNA cytidylyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0042245">
        <property type="term" value="P:RNA repair"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0001680">
        <property type="term" value="P:tRNA 3'-terminal CCA addition"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd00077">
        <property type="entry name" value="HDc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="CDD" id="cd05398">
        <property type="entry name" value="NT_ClassII-CCAase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.460.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01261">
        <property type="entry name" value="CCA_bact_type1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012006">
        <property type="entry name" value="CCA_bact"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003607">
        <property type="entry name" value="HD/PDEase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006674">
        <property type="entry name" value="HD_domain"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043519">
        <property type="entry name" value="NT_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002646">
        <property type="entry name" value="PolA_pol_head_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR032828">
        <property type="entry name" value="PolyA_RNA-bd"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01966">
        <property type="entry name" value="HD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01743">
        <property type="entry name" value="PolyA_pol"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12627">
        <property type="entry name" value="PolyA_pol_RNAbd"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF000813">
        <property type="entry name" value="CCA_bact"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF81301">
        <property type="entry name" value="SSF81301"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51831">
        <property type="entry name" value="HD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="8 11" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="11 13" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="9 11" id="KW-0460">Magnesium</keyword>
    <keyword evidence="5 11" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="11" id="KW-0511">Multifunctional enzyme</keyword>
    <keyword evidence="1 11" id="KW-0533">Nickel</keyword>
    <keyword evidence="6 11" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="4 11 13" id="KW-0548">Nucleotidyltransferase</keyword>
    <keyword evidence="14" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="7 11" id="KW-0692">RNA repair</keyword>
    <keyword evidence="10 11" id="KW-0694">RNA-binding</keyword>
    <keyword evidence="2 11 13" id="KW-0808">Transferase</keyword>
    <keyword evidence="3 11" id="KW-0819">tRNA processing</keyword>
    <feature type="domain" description="HD" evidence="12">
        <location>
            <begin position="233"/>
            <end position="334"/>
        </location>
    </feature>
    <feature type="binding site" evidence="11">
        <location>
            <position position="11"/>
        </location>
    </feature>
    <feature type="binding site" evidence="11">
        <location>
            <position position="14"/>
        </location>
    </feature>
    <feature type="binding site" evidence="11">
        <location>
            <position position="24"/>
        </location>
        <ligand>
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="11">
        <location>
            <position position="26"/>
        </location>
        <ligand>
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="11">
        <location>
            <position position="94"/>
        </location>
    </feature>
    <feature type="binding site" evidence="11">
        <location>
            <position position="144"/>
        </location>
    </feature>
    <feature type="binding site" evidence="11">
        <location>
            <position position="147"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022596"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022694"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022695"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022800"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00022842"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00022884"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01261"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="12">
        <source>
            <dbReference type="PROSITE" id="PS51831"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="13">
        <source>
            <dbReference type="EMBL" id="ABX33901.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="14">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="417" mass="46069" checksum="970228803FB15734" modified="2008-01-15" version="1">MSEFQVYMVGGAVRDRLLGRAVHDRDWVVVGATPEQMAERGFMPVGRDFPVFLHPETHEEYALARTERKSGPGYRGFVVQAAPDVTLEQDLARRDLTINAMAAPPDWDGKGAIDDPYGGQADLQARVLRHVTDAFREDPVRILRVARFAARFHEFTVAPETMALMQEMVAAGEVDALVPERVWQEISRGLMERQPSRMFELLRECGALAVLLPELERLWGVPQRAEYHPEVDTGVHAMMVLDMAAQLDTPLPVRYACLVHDLGKGTTPADVLPRHIGHEHRSARLAEKVGERLRVPTDCRELGDVVAREHGNIHRSGELNGAAIVRLLERCDAIRKPARFEQALAACECDARGRLGFEDRPYPQRARLRDALAAALSISTSDIAAQAAARGKQGKAIGEAVQAARAQAVADWLAQAA</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="71" xmlns="http://uniprot.org/uniprot">
    <accession>A9BY18</accession>
    <name>A9BY18_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="10">General secretion pathway protein D</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="10" type="ordered locus">Daci_1309</name>
    </gene>
    <organism evidence="10 11">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="10 11" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="11">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="11" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="11">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="6">Cell outer membrane</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="1">Belongs to the bacterial secretin family. GSP D subfamily.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX33953.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012203239.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_1309"/>
    <dbReference type="PRIDE" id="A9BY18"/>
    <dbReference type="EnsemblBacteria" id="ABX33953">
        <property type="protein sequence ID" value="ABX33953"/>
        <property type="gene ID" value="Daci_1309"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_1309"/>
    <dbReference type="eggNOG" id="COG1450">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_006756_1_2_4"/>
    <dbReference type="OMA" id="QIQVGDN"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009279">
        <property type="term" value="C:cell outer membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015627">
        <property type="term" value="C:type II protein secretion system complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015628">
        <property type="term" value="P:protein secretion by the type II secretion system"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.1370.120">
        <property type="match status" value="3"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001775">
        <property type="entry name" value="GspD/PilQ"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005644">
        <property type="entry name" value="NolW-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038591">
        <property type="entry name" value="NolW-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004846">
        <property type="entry name" value="T2SS/T3SS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013356">
        <property type="entry name" value="T2SS_GspD"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00263">
        <property type="entry name" value="Secretin"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03958">
        <property type="entry name" value="Secretin_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00811">
        <property type="entry name" value="BCTERIALGSPD"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR02517">
        <property type="entry name" value="type_II_gspD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2" id="KW-0472">Membrane</keyword>
    <keyword evidence="5" id="KW-0653">Protein transport</keyword>
    <keyword evidence="11" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4 8" id="KW-0732">Signal</keyword>
    <keyword evidence="3" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="2" id="KW-1134">Transmembrane beta strand</keyword>
    <keyword evidence="6" id="KW-0813">Transport</keyword>
    <feature type="signal peptide" evidence="8">
        <location>
            <begin position="1"/>
            <end position="24"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5002735950" evidence="8">
        <location>
            <begin position="25"/>
            <end position="819"/>
        </location>
    </feature>
    <feature type="domain" description="Secretin_N" evidence="9">
        <location>
            <begin position="259"/>
            <end position="365"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="7">
        <location>
            <begin position="795"/>
            <end position="819"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="7">
        <location>
            <begin position="799"/>
            <end position="819"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00006980"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022452"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022729"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022927"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="RuleBase" id="RU004004"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="9">
        <source>
            <dbReference type="Pfam" id="PF03958"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="EMBL" id="ABX33953.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="819" mass="85007" checksum="1DD967C90E7E6AE1" modified="2008-01-15" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="46" xmlns="http://uniprot.org/uniprot">
    <accession>A9BY66</accession>
    <name>A9BY66_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_1561</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX34205.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_1561"/>
    <dbReference type="PRIDE" id="A9BY66"/>
    <dbReference type="EnsemblBacteria" id="ABX34205">
        <property type="protein sequence ID" value="ABX34205"/>
        <property type="gene ID" value="Daci_1561"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_1561"/>
    <dbReference type="eggNOG" id="COG1238">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_125997_1_0_4"/>
    <dbReference type="OMA" id="WSLLFAW"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR032816">
        <property type="entry name" value="SNARE_assoc"/>
    </dbReference>
    <dbReference type="Pfam" id="PF09335">
        <property type="entry name" value="SNARE_assoc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="12"/>
            <end position="32"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="52"/>
            <end position="75"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="150"/>
            <end position="172"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX34205.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="178" mass="19923" checksum="AF79C2347BFA689D" modified="2008-01-15" version="1">MEVWMHQLLSWLALPQFGLSTVFIVALISATLLPLGSEPAVVGLLQLNPDLFWQTVFVATAGNTLGGAISWWMGLGAHKAWRAARERRRAGLPEDLRAKPPRALSRHERRARVWLRRLGAKACLLSWLPVVGDPLCAVAGWLRLPFWPCVFYMAIGKFLRYVVMTVVLLQLLPASWAS</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-05-25" version="55" xmlns="http://uniprot.org/uniprot">
    <accession>A9BYG2</accession>
    <name>A9BYG2_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Daci_1865</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="4" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX34505.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_1865"/>
    <dbReference type="EnsemblBacteria" id="ABX34505">
        <property type="protein sequence ID" value="ABX34505"/>
        <property type="gene ID" value="Daci_1865"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_1865"/>
    <dbReference type="eggNOG" id="COG0697">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_033863_4_2_4"/>
    <dbReference type="OMA" id="WIFLGEV"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000620">
        <property type="entry name" value="EamA_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00892">
        <property type="entry name" value="EamA"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="51"/>
            <end position="70"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="82"/>
            <end position="101"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="113"/>
            <end position="132"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="139"/>
            <end position="160"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="172"/>
            <end position="192"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="199"/>
            <end position="219"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="234"/>
            <end position="254"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="266"/>
            <end position="285"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="291"/>
            <end position="309"/>
        </location>
    </feature>
    <feature type="domain" description="EamA" evidence="2">
        <location>
            <begin position="23"/>
            <end position="154"/>
        </location>
    </feature>
    <feature type="domain" description="EamA" evidence="2">
        <location>
            <begin position="169"/>
            <end position="308"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF00892"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ABX34505.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="328" mass="33859" checksum="AFBFB1380C963D29" modified="2008-01-15" version="1">MNRYEHIVRAMNFQRFFGPHLRLVGMALLWGASWPAGRVVAQNMPPLAAASLRFLLAAAVLLPWLYWAGGMAGLRHWSAKRWLGMAAAGATGVFGYAAFFLMGLQHVPAGKAALVITLNPVLTLALAVWLFGERLNRTIALGMALAACGAVVVISHGQPLALLQGSVGAGELLILGCVVCWVTYTLIGRWLLTGVDALSATAVTSTMGAAMLLVASLVVEGPAGLQAAVLGNATAWGALAFLAFGATALAYAWYFDGVKALGAGAASGYITLVPVIGVALSALWLGESIDASIVLGGGMAVAGTALMNWGRRPAAAVHVVAKRTAVQS</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="62" xmlns="http://uniprot.org/uniprot">
    <accession>A9BZD9</accession>
    <name>A9BZD9_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Peptidase M14, carboxypeptidase A</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Daci_2901</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="4" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX35539.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012204749.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_2901"/>
    <dbReference type="PRIDE" id="A9BZD9"/>
    <dbReference type="EnsemblBacteria" id="ABX35539">
        <property type="protein sequence ID" value="ABX35539"/>
        <property type="gene ID" value="Daci_2901"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_2901"/>
    <dbReference type="eggNOG" id="COG2866">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_029909_0_0_4"/>
    <dbReference type="OMA" id="DTQNSYF"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004181">
        <property type="term" value="F:metallocarboxypeptidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008270">
        <property type="term" value="F:zinc ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006508">
        <property type="term" value="P:proteolysis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000834">
        <property type="entry name" value="Peptidase_M14"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00246">
        <property type="entry name" value="Peptidase_M14"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-0121">Carboxypeptidase</keyword>
    <keyword evidence="3" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="3" id="KW-0645">Protease</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Peptidase_M14" evidence="2">
        <location>
            <begin position="139"/>
            <end position="240"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="21"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="46"/>
            <end position="69"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="1"/>
            <end position="17"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Pro residues" evidence="1">
        <location>
            <begin position="46"/>
            <end position="64"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF00246"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ABX35539.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="585" mass="62751" checksum="5235F7BA143A2698" modified="2008-01-15" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="59" xmlns="http://uniprot.org/uniprot">
    <accession>A9BZG5</accession>
    <name>A9BZG5_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Xylose isomerase domain protein TIM barrel</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_2927</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
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                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
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            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX35565.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012204775.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_2927"/>
    <dbReference type="PRIDE" id="A9BZG5"/>
    <dbReference type="EnsemblBacteria" id="ABX35565">
        <property type="protein sequence ID" value="ABX35565"/>
        <property type="gene ID" value="Daci_2927"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_2927"/>
    <dbReference type="eggNOG" id="COG1082">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_082655_0_0_4"/>
    <dbReference type="OMA" id="QAHPYDF"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016853">
        <property type="term" value="F:isomerase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036237">
        <property type="entry name" value="Xyl_isomerase-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013022">
        <property type="entry name" value="Xyl_isomerase-like_TIM-brl"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01261">
        <property type="entry name" value="AP_endonuc_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51658">
        <property type="entry name" value="SSF51658"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0413">Isomerase</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="AP_endonuc_2" evidence="1">
        <location>
            <begin position="20"/>
            <end position="288"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF01261"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX35565.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="307" mass="34930" checksum="3E57E15CCE87A619" modified="2008-01-15" version="1">MKIALDPYMIRHEPLDRLPHAVAELGYDQIELSPRSDFLDWWVMPRATRERMAAFRQAMRASGVALASLQPMYRWASPFEDERQWAMRCWRKAIEVAVEMDCALMVSEFGRGASPERSVNGPAGANPKEMCEAAWFRSMDELLPILEREGITLSVEPHPEDWLEQLQPAMDIVGNMASKALRLSYIAPHTFHYGGDMAAMLREAAPLLAHVRVADTFDHRKSSQLRYIVNPPGSHHIRVHQHLDMGQGEIDWDLFFGTLGAAGFDGVLSSCVFAWEERAAESSRFMRREIQRYLNRHFSPAALPLPA</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="63" xmlns="http://uniprot.org/uniprot">
    <accession>A9BZL4</accession>
    <name>A9BZL4_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="3">RND efflux system, outer membrane lipoprotein, NodT family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Daci_3284</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="4" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="2">Cell membrane</location>
            <topology evidence="2">Lipid-anchor</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="1 2">Belongs to the outer membrane factor (OMF) (TC 1.B.17) family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX35922.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012205122.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_3284"/>
    <dbReference type="PRIDE" id="A9BZL4"/>
    <dbReference type="EnsemblBacteria" id="ABX35922">
        <property type="protein sequence ID" value="ABX35922"/>
        <property type="gene ID" value="Daci_3284"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_3284"/>
    <dbReference type="eggNOG" id="COG1538">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_012817_13_1_4"/>
    <dbReference type="OMA" id="TIRYKEG"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015562">
        <property type="term" value="F:efflux transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003423">
        <property type="entry name" value="OMP_efflux"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010131">
        <property type="entry name" value="RND_efflux_OM_lipoprot_NodT"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02321">
        <property type="entry name" value="OEP"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01845">
        <property type="entry name" value="outer_NodT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2 3" id="KW-0449">Lipoprotein</keyword>
    <keyword evidence="2" id="KW-0472">Membrane</keyword>
    <keyword evidence="2" id="KW-0564">Palmitate</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0732">Signal</keyword>
    <keyword evidence="2" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="2" id="KW-1134">Transmembrane beta strand</keyword>
    <feature type="signal peptide" evidence="2">
        <location>
            <begin position="1"/>
            <end position="27"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5001436699" evidence="2">
        <location>
            <begin position="28"/>
            <end position="484"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00007613"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="RuleBase" id="RU362097"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ABX35922.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="484" mass="50951" checksum="D9D96550DEE51EF2" modified="2008-01-15" version="1">MKDMNDKTMPARLGCIALALAALGGCAAQQTMPDRTAPALAASWKQQGEAVPASVSPQWWQAFGSTELGGMVQAAQDQSLDMAAAMARVRQAEAATRQAGAALLPSLNGELRAQRMNHAQVAGGQASVYGAALTASYEVDFWGRNRATRDAAAAAWQASRFDQDTVRLTVTAQVAHGWLQAVALRERQAIAARNVANAERLLGLVESRARAGAATQLELAQQRGLVASQRQALATLRRQGEDADATLAVLLGQARRPALATDSLQALQLPEIGAGLPTQLLQRRPDIANAEAQLAAASANLQAARAALWPRLTLTGSAGTSAGRASDWLREPVYSLLAGLAGPIFDGGRLAAERDGAQARREELLAGYYKSIVAAYGDVDLALNAVHGLKAQAEAQAEVLAQARQAVSLAELRYKAGAESLLSLLQAQTTLYAAQDDAVLQRLLQLQARVALYRALGGGWEAPAVGTEMPERQAQKSQEALPPG</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="48" xmlns="http://uniprot.org/uniprot">
    <accession>A9BZL9</accession>
    <name>A9BZL9_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ordered locus">Daci_3289</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="5" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX35927.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_3289"/>
    <dbReference type="PRIDE" id="A9BZL9"/>
    <dbReference type="EnsemblBacteria" id="ABX35927">
        <property type="protein sequence ID" value="ABX35927"/>
        <property type="gene ID" value="Daci_3289"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_3289"/>
    <dbReference type="eggNOG" id="COG3170">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_363195_0_0_4"/>
    <dbReference type="OMA" id="QQQAEFF"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="3" id="KW-0472">Membrane</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="3" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="3">
        <location>
            <begin position="337"/>
            <end position="358"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="166"/>
            <end position="238"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="376"/>
            <end position="440"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="871"/>
            <end position="917"/>
        </location>
    </feature>
    <feature type="coiled-coil region" evidence="1">
        <location>
            <begin position="283"/>
            <end position="310"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="2">
        <location>
            <begin position="169"/>
            <end position="183"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="2">
        <location>
            <begin position="390"/>
            <end position="406"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="ABX35927.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="917" mass="97037" checksum="393FB47BD4769E87" modified="2008-01-15" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="75" xmlns="http://uniprot.org/uniprot">
    <accession>A9BZP1</accession>
    <name>A9BZP1_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="8">ABC transporter related</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="8" type="ordered locus">Daci_3311</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="9" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX35949.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012205149.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_3311"/>
    <dbReference type="PRIDE" id="A9BZP1"/>
    <dbReference type="EnsemblBacteria" id="ABX35949">
        <property type="protein sequence ID" value="ABX35949"/>
        <property type="gene ID" value="Daci_3311"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_3311"/>
    <dbReference type="eggNOG" id="COG0411">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_000604_1_2_4"/>
    <dbReference type="OMA" id="QITNIFH"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003593">
        <property type="entry name" value="AAA+_ATPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003439">
        <property type="entry name" value="ABC_transporter-like_ATP-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR032823">
        <property type="entry name" value="BCA_ABC_TP_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00005">
        <property type="entry name" value="ABC_tran"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12399">
        <property type="entry name" value="BCA_ABC_TP_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00382">
        <property type="entry name" value="AAA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50893">
        <property type="entry name" value="ABC_TRANSPORTER_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3 6" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="1" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="5" id="KW-0472">Membrane</keyword>
    <keyword evidence="2 6" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4" id="KW-1278">Translocase</keyword>
    <feature type="domain" description="ABC transporter" evidence="7">
        <location>
            <begin position="24"/>
            <end position="265"/>
        </location>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <begin position="56"/>
            <end position="63"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022967"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00434"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="PROSITE" id="PS50893"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="ABX35949.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="275" mass="29858" checksum="A40E5A2FFBB14CFD" modified="2008-01-15" version="1">MSSIAIERPGTAAAAAAGEATYALELRDLYKRFGKAEIIRGAQLAVKPGERVAIIGPNGAGKSTLFNLISGRFEPTSGQVLLNGQRIDGKKPYEINRMGLSRSFQITNIFPKLSVFENLRCSVLWSLGYRYSCWRFLSKLRDANARADELMEMIGLHRKRDTLAVNLTYAEQRALEIGITIGGGAGVILLDEPTAGMSNSETAHFIQLIKKVTEGKTLLTVEHDMGVVFGLADKIAVVVYGEVIAYDTPEAVRANPRVQEAYLGSSVADQQAGAH</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="69" xmlns="http://uniprot.org/uniprot">
    <accession>A9BZW7</accession>
    <name>A9BZW7_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="3">NUDIX hydrolase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Daci_3595</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="4" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX36229.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012205429.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_3595"/>
    <dbReference type="PRIDE" id="A9BZW7"/>
    <dbReference type="EnsemblBacteria" id="ABX36229">
        <property type="protein sequence ID" value="ABX36229"/>
        <property type="gene ID" value="Daci_3595"/>
    </dbReference>
    <dbReference type="GeneID" id="60687803"/>
    <dbReference type="KEGG" id="dac:Daci_3595"/>
    <dbReference type="eggNOG" id="COG1051">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_037162_16_1_4"/>
    <dbReference type="OMA" id="PHINQVH"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016787">
        <property type="term" value="F:hydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015797">
        <property type="entry name" value="NUDIX_hydrolase-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020084">
        <property type="entry name" value="NUDIX_hydrolase_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000086">
        <property type="entry name" value="NUDIX_hydrolase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029401">
        <property type="entry name" value="Nudix_N"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00293">
        <property type="entry name" value="NUDIX"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF14803">
        <property type="entry name" value="Nudix_N_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55811">
        <property type="entry name" value="SSF55811"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51462">
        <property type="entry name" value="NUDIX"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00893">
        <property type="entry name" value="NUDIX_BOX"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1 3" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Nudix hydrolase" evidence="2">
        <location>
            <begin position="44"/>
            <end position="167"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS51462"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ABX36229.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="187" mass="21286" checksum="84FD4546BA0685C8" modified="2008-01-15" version="1">MIFRSPIKFCRACGTAVVYRIPDDGDTRERAVCPHCHTIHYENPLNVVGTIPVTDDGRVLLCKRNIEPRRGLWTLPAGFMELAETTARGAQRETDEEAGADIEMGPLFSIVDVPKVSQVHLFYRARLRSEQFYPGPETMEARLFAEAEIPWEELAFRTVRVTLERYFEDRAAGLLDAHRVHSIDLSL</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="66" xmlns="http://uniprot.org/uniprot">
    <accession>A9BZX0</accession>
    <name>A9BZX0_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="9">Purine nucleoside phosphorylase</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="10" type="ordered locus">Daci_3598</name>
    </gene>
    <organism evidence="10 11">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="10 11" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="11">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="11" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="11">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="4">
            <text>adenosine + H(+) + H2O = inosine + NH4(+)</text>
            <dbReference type="Rhea" id="RHEA:24408"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:16335"/>
            <dbReference type="ChEBI" id="CHEBI:17596"/>
            <dbReference type="ChEBI" id="CHEBI:28938"/>
            <dbReference type="EC" id="3.5.4.4"/>
        </reaction>
        <physiologicalReaction direction="left-to-right" evidence="4">
            <dbReference type="Rhea" id="RHEA:24409"/>
        </physiologicalReaction>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="2">
            <text>adenosine + phosphate = adenine + alpha-D-ribose 1-phosphate</text>
            <dbReference type="Rhea" id="RHEA:27642"/>
            <dbReference type="ChEBI" id="CHEBI:16335"/>
            <dbReference type="ChEBI" id="CHEBI:16708"/>
            <dbReference type="ChEBI" id="CHEBI:43474"/>
            <dbReference type="ChEBI" id="CHEBI:57720"/>
            <dbReference type="EC" id="2.4.2.1"/>
        </reaction>
        <physiologicalReaction direction="left-to-right" evidence="2">
            <dbReference type="Rhea" id="RHEA:27643"/>
        </physiologicalReaction>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>inosine + phosphate = alpha-D-ribose 1-phosphate + hypoxanthine</text>
            <dbReference type="Rhea" id="RHEA:27646"/>
            <dbReference type="ChEBI" id="CHEBI:17368"/>
            <dbReference type="ChEBI" id="CHEBI:17596"/>
            <dbReference type="ChEBI" id="CHEBI:43474"/>
            <dbReference type="ChEBI" id="CHEBI:57720"/>
            <dbReference type="EC" id="2.4.2.1"/>
        </reaction>
        <physiologicalReaction direction="left-to-right" evidence="1">
            <dbReference type="Rhea" id="RHEA:27647"/>
        </physiologicalReaction>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="3">
            <text>phosphate + S-methyl-5'-thioadenosine = adenine + S-methyl-5-thio-alpha-D-ribose 1-phosphate</text>
            <dbReference type="Rhea" id="RHEA:11852"/>
            <dbReference type="ChEBI" id="CHEBI:16708"/>
            <dbReference type="ChEBI" id="CHEBI:17509"/>
            <dbReference type="ChEBI" id="CHEBI:43474"/>
            <dbReference type="ChEBI" id="CHEBI:58533"/>
            <dbReference type="EC" id="2.4.2.28"/>
        </reaction>
        <physiologicalReaction direction="left-to-right" evidence="3">
            <dbReference type="Rhea" id="RHEA:11853"/>
        </physiologicalReaction>
    </comment>
    <comment type="similarity">
        <text evidence="5 9">Belongs to the purine nucleoside phosphorylase YfiH/LACC1 family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX36232.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012205432.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_3598"/>
    <dbReference type="PRIDE" id="A9BZX0"/>
    <dbReference type="EnsemblBacteria" id="ABX36232">
        <property type="protein sequence ID" value="ABX36232"/>
        <property type="gene ID" value="Daci_3598"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_3598"/>
    <dbReference type="eggNOG" id="COG1496">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_065784_1_1_4"/>
    <dbReference type="OMA" id="CFADCVP"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004000">
        <property type="term" value="F:adenosine deaminase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0017061">
        <property type="term" value="F:S-methyl-5-thioadenosine phosphorylase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="CDD" id="cd16833">
        <property type="entry name" value="YfiH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.60.140.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003730">
        <property type="entry name" value="Cu_polyphenol_OxRdtase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038371">
        <property type="entry name" value="Cu_polyphenol_OxRdtase_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011324">
        <property type="entry name" value="Cytotoxic_necrot_fac-like_cat"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30616">
        <property type="entry name" value="PTHR30616"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02578">
        <property type="entry name" value="Cu-oxidase_4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF64438">
        <property type="entry name" value="SSF64438"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00726">
        <property type="entry name" value="TIGR00726"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="7" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="11" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="6" id="KW-0808">Transferase</keyword>
    <keyword evidence="8" id="KW-0862">Zinc</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00000553"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00001229"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00001292"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00001600"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00007353"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00022833"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="RuleBase" id="RU361274"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="EMBL" id="ABX36232.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="281" mass="29053" checksum="02FB3FE9D00A58C0" modified="2008-01-15" version="1">MSAARPDSLPGTIPASWLVPEWPAPPGVHALCTSREGGVSTAPWGSLNLGDHVGDDPQAVRTNRQRLQEIVRAHTPGACAVFLQQVHGVDVVALDAGSAQGQAFDACVTRASGVVCTIMVADCLPVLLAHRSGAVVGAAHAGWRGLAGGVLETLFERFAGQIQTPPGQAAQQTLAWLGPCIGPRSFEVGAEVRAAFIAHDAAAGAHFTAVPQEGGGAPKYLANLAGLARQRLAALGITAIYGNDGGDAWCTVLNGSRFFSHRRDAARLGSSGRFAACIWKD</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="62" xmlns="http://uniprot.org/uniprot">
    <accession>A9C050</accession>
    <name>A9C050_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Porin, gram-negative type</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ordered locus">Daci_3680</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="6" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX36312.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012205508.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_3680"/>
    <dbReference type="PRIDE" id="A9C050"/>
    <dbReference type="EnsemblBacteria" id="ABX36312">
        <property type="protein sequence ID" value="ABX36312"/>
        <property type="gene ID" value="Daci_3680"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_3680"/>
    <dbReference type="eggNOG" id="COG3203">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_038238_1_1_4"/>
    <dbReference type="OMA" id="RVKYASA"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046930">
        <property type="term" value="C:pore complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015288">
        <property type="term" value="F:porin activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006811">
        <property type="term" value="P:ion transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd00342">
        <property type="entry name" value="gram_neg_porins"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.160.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR033900">
        <property type="entry name" value="Gram_neg_porin_domain"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023614">
        <property type="entry name" value="Porin_dom_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13609">
        <property type="entry name" value="Porin_4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0406">Ion transport</keyword>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-0626">Porin</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1134">Transmembrane beta strand</keyword>
    <keyword evidence="3" id="KW-0813">Transport</keyword>
    <feature type="domain" description="Porin_4" evidence="4">
        <location>
            <begin position="6"/>
            <end position="337"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022452"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023065"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023114"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="Pfam" id="PF13609"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="ABX36312.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="366" mass="37396" checksum="BADF27F18B72B4CF" modified="2008-01-15" version="1">MGTFFASSSSLALAQSSVTIFGVVDVGVTIAKSGSNRLNALNSSQGKTSLLGLRGTEDLGGGNRAQLWLEGGLNPDVGTGGSSGSLGFERRSTIGLSNNSWGEIRLGRDYTPSYNIFTAFAGPDTTTGVQANLFQTIRQTAYNAASQSGVVDRTRISNAVGYFLPSDLGGIYGQFSVSFGDENASGSGASKARRYIGGNLGYRSGPLNVGIGYGRIDGTAAVASPSAIAATSDLEDLVLGASYNFGSFLLNGGYNSLKWEPVNGATSGKVDGFYLGATIPMGPGSLRVKYASAKFSGNASALTRSGGKADKYSIGYVYEFSKRTSLYAGLARVNNKNGASVGLIGGPAGVANAGSTGVDLGISHSF</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-01-19" version="41" xmlns="http://uniprot.org/uniprot">
    <accession>A9C0F8</accession>
    <name>A9C0F8_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Daci_4093</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="2" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX36724.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_4093"/>
    <dbReference type="EnsemblBacteria" id="ABX36724">
        <property type="protein sequence ID" value="ABX36724"/>
        <property type="gene ID" value="Daci_4093"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_4093"/>
    <dbReference type="HOGENOM" id="CLU_130962_1_0_4"/>
    <dbReference type="OMA" id="LEWPRAG"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ABX36724.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="165" mass="17767" checksum="F53B73EBC5B3ADBE" modified="2008-01-15" version="1">MAAYGTDEGLQAWLTAQGLTLPVGAVPATLREIGSAYVDSVYSHALQCSRKTNGWNQELEWPRAGHRIKGQEVPDTLIPLAWVNASYRAAWLEANNPGWATGSNDPNRVTKREKVDSIEREFFSAADAGGSASAPGAVADALINGMIAPWLCSKARRADALFRVI</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="71" xmlns="http://uniprot.org/uniprot">
    <accession>A9C0G6</accession>
    <name>A9C0G6_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Putative anti-sigma regulatory factor, serine/threonine protein kinase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_4408</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX37039.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012206211.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_4408"/>
    <dbReference type="PRIDE" id="A9C0G6"/>
    <dbReference type="EnsemblBacteria" id="ABX37039">
        <property type="protein sequence ID" value="ABX37039"/>
        <property type="gene ID" value="Daci_4408"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_4408"/>
    <dbReference type="eggNOG" id="COG2172">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_066586_0_0_4"/>
    <dbReference type="OMA" id="VCGDAWA"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004674">
        <property type="term" value="F:protein serine/threonine kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004722">
        <property type="term" value="F:protein serine/threonine phosphatase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016310">
        <property type="term" value="P:phosphorylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.565.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.60.40.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003594">
        <property type="entry name" value="HATPase_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036890">
        <property type="entry name" value="HATPase_C_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036457">
        <property type="entry name" value="PPM-type_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001932">
        <property type="entry name" value="PPM-type_phosphatase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR039248">
        <property type="entry name" value="Ptase_RsbX"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR35801">
        <property type="entry name" value="PTHR35801"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13581">
        <property type="entry name" value="HATPase_c_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00331">
        <property type="entry name" value="PP2C_SIG"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55874">
        <property type="entry name" value="SSF55874"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF81606">
        <property type="entry name" value="SSF81606"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0418">Kinase</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0723">Serine/threonine-protein kinase</keyword>
    <keyword evidence="2" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="PPM-type phosphatase" evidence="1">
        <location>
            <begin position="159"/>
            <end position="343"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="SMART" id="SM00331"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX37039.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="347" mass="36009" checksum="0DE1790EC5E91662" modified="2008-01-15" version="1">MEVTRGWTHRSFPIGDASRVGEVRRHVVALASDMGWGDEDMGRSALVATELATNLVRHARDAEIWIAERPPLHDIEIICVDRGPGIEDIATAMQDGVSTGSGSPGTGLGAISRVADDFFVVSEATGTVSLARLREGRRAPSALSLRMGAVCLAVAPETISGDAWAVRSGAGLAEVLVADGLGHGPLAGEAARAAVDVFASQNWNGNGNGGADAAMPLEEFVAQAHAALRGTRGAALLAVRFGAQTVHSCGAGNISGRLFNGVASLSLSSQHGTAGVQISRPRVADCSSLDHGVLVLHSDGVSARWKHEDYAGLLGRDPGLLAACLLWHNTRSRDDATVVVLKAEEAQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="100" xmlns="http://uniprot.org/uniprot">
    <accession>A9C168</accession>
    <name>A9C168_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="15">Bifunctional protein GlmU</fullName>
        </recommendedName>
        <domain>
            <recommendedName>
                <fullName evidence="15">UDP-N-acetylglucosamine pyrophosphorylase</fullName>
                <ecNumber evidence="15">2.7.7.23</ecNumber>
            </recommendedName>
            <alternativeName>
                <fullName evidence="15">N-acetylglucosamine-1-phosphate uridyltransferase</fullName>
            </alternativeName>
        </domain>
        <domain>
            <recommendedName>
                <fullName evidence="15">Glucosamine-1-phosphate N-acetyltransferase</fullName>
                <ecNumber evidence="15">2.3.1.157</ecNumber>
            </recommendedName>
        </domain>
    </protein>
    <gene>
        <name evidence="15" type="primary">glmU</name>
        <name evidence="17" type="ordered locus">Daci_5903</name>
    </gene>
    <organism evidence="17 18">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="17 18" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="18">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="18" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="18">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="15">Catalyzes the last two sequential reactions in the de novo biosynthetic pathway for UDP-N-acetylglucosamine (UDP-GlcNAc). The C-terminal domain catalyzes the transfer of acetyl group from acetyl coenzyme A to glucosamine-1-phosphate (GlcN-1-P) to produce N-acetylglucosamine-1-phosphate (GlcNAc-1-P), which is converted into UDP-GlcNAc by the transfer of uridine 5-monophosphate (from uridine 5-triphosphate), a reaction catalyzed by the N-terminal domain.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="15">
            <text>H(+) + N-acetyl-alpha-D-glucosamine 1-phosphate + UTP = diphosphate + UDP-N-acetyl-alpha-D-glucosamine</text>
            <dbReference type="Rhea" id="RHEA:13509"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:33019"/>
            <dbReference type="ChEBI" id="CHEBI:46398"/>
            <dbReference type="ChEBI" id="CHEBI:57705"/>
            <dbReference type="ChEBI" id="CHEBI:57776"/>
            <dbReference type="EC" id="2.7.7.23"/>
        </reaction>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="15">
            <text>acetyl-CoA + alpha-D-glucosamine 1-phosphate = CoA + H(+) + N-acetyl-alpha-D-glucosamine 1-phosphate</text>
            <dbReference type="Rhea" id="RHEA:13725"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:57287"/>
            <dbReference type="ChEBI" id="CHEBI:57288"/>
            <dbReference type="ChEBI" id="CHEBI:57776"/>
            <dbReference type="ChEBI" id="CHEBI:58516"/>
            <dbReference type="EC" id="2.3.1.157"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="15">
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </cofactor>
        <text evidence="15">Binds 1 Mg(2+) ion per subunit.</text>
    </comment>
    <comment type="pathway">
        <text evidence="15">Bacterial outer membrane biogenesis; LPS lipid A biosynthesis.</text>
    </comment>
    <comment type="pathway">
        <text evidence="15">Nucleotide-sugar biosynthesis; UDP-N-acetyl-alpha-D-glucosamine biosynthesis; N-acetyl-alpha-D-glucosamine 1-phosphate from alpha-D-glucosamine 6-phosphate (route II): step 2/2.</text>
    </comment>
    <comment type="pathway">
        <text evidence="15">Nucleotide-sugar biosynthesis; UDP-N-acetyl-alpha-D-glucosamine biosynthesis; UDP-N-acetyl-alpha-D-glucosamine from N-acetyl-alpha-D-glucosamine 1-phosphate: step 1/1.</text>
    </comment>
    <comment type="subunit">
        <text evidence="15">Homotrimer.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1 15">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2 15">In the C-terminal section; belongs to the transferase hexapeptide repeat family.</text>
    </comment>
    <comment type="similarity">
        <text evidence="3 15">In the N-terminal section; belongs to the N-acetylglucosamine-1-phosphate uridyltransferase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="15">Lacks conserved residue(s) required for the propagation of feature annotation.</text>
    </comment>
    <dbReference type="EC" id="2.7.7.23" evidence="15"/>
    <dbReference type="EC" id="2.3.1.157" evidence="15"/>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX38531.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
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        <property type="taxonomic scope" value="Bacteria"/>
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        <property type="project" value="UniProtKB-SubCell"/>
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    </dbReference>
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        <property type="entry name" value="HEXAPEP_TRANSFERASES"/>
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    </dbReference>
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    <keyword evidence="10 15" id="KW-0133">Cell shape</keyword>
    <keyword evidence="14 15" id="KW-0961">Cell wall biogenesis/degradation</keyword>
    <keyword evidence="4 15" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="9 15" id="KW-0460">Magnesium</keyword>
    <keyword evidence="7 15" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="12 15" id="KW-0511">Multifunctional enzyme</keyword>
    <keyword evidence="6 15" id="KW-0548">Nucleotidyltransferase</keyword>
    <keyword evidence="11 15" id="KW-0573">Peptidoglycan synthesis</keyword>
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    <keyword evidence="8 15" id="KW-0677">Repeat</keyword>
    <keyword evidence="5 15" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="NTP_transf_3" evidence="16">
        <location>
            <begin position="8"/>
            <end position="134"/>
        </location>
    </feature>
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        <location>
            <begin position="1"/>
            <end position="235"/>
        </location>
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        <location>
            <begin position="86"/>
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        </location>
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            <begin position="108"/>
            <end position="110"/>
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            <begin position="236"/>
            <end position="256"/>
        </location>
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        <location>
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            <begin position="404"/>
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        <location>
            <position position="24"/>
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        <ligand>
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        </ligand>
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        </ligand>
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            <position position="145"/>
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        <ligand>
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        <source>
            <dbReference type="ARBA" id="ARBA00023316"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="15">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01631"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="16">
        <source>
            <dbReference type="Pfam" id="PF12804"/>
        </source>
    </evidence>
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        <source>
            <dbReference type="EMBL" id="ABX38531.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="18">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="476" mass="49454" checksum="B82451635EA36335" modified="2008-01-15" version="1">MTAPLDLVIMAAGKGTRMKSRLPKVLQRLAGRPLLGHVLSTAAQLDARSAVVVTGHGADQVETAMAAACQGGSMALKFVRQEPQLGTGHAVQQAVPALAGDGMVIVLSGDVPLTQADTLRALVDAADGQRLALLTVRLPDPTGYGRIVRGEDGTVQRIVEQKDANDAQRAIQEIYSGIMAVPARHLAGWLARLTNDNAQGEYYLTDVVAMAVADGVPVVAHCIADPVQVAGVNSPLQLAELERAHQGAQARTLMEQGVRLADPARFDLRDDPRTGRAARLACGQDVEIDVGCIFSGHVEIGEGARIGAYCSIANATIAAGAVLHPYTHVDGEKAGVSVGEGALVGPFARLRPGAQLGREVHIGNFVEVKNSVLADGAKANHLAYLGDATVGERVNYGAGSITANYDGVNKHRTVIEADVHIGSNCVLVAPVTIGAGGTVGGGSTVTKSTEPGVLTVSRGRQVSITSWKRPVKLPKS</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="62" xmlns="http://uniprot.org/uniprot">
    <accession>A9C1D4</accession>
    <name>A9C1D4_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_5969</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX38597.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012207766.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_5969"/>
    <dbReference type="PRIDE" id="A9C1D4"/>
    <dbReference type="EnsemblBacteria" id="ABX38597">
        <property type="protein sequence ID" value="ABX38597"/>
        <property type="gene ID" value="Daci_5969"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_5969"/>
    <dbReference type="eggNOG" id="COG0111">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_019796_1_0_4"/>
    <dbReference type="OMA" id="VQMAEYV"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051287">
        <property type="term" value="F:NAD binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006140">
        <property type="entry name" value="D-isomer_DH_NAD-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036291">
        <property type="entry name" value="NAD(P)-bd_dom_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02826">
        <property type="entry name" value="2-Hacid_dh_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51735">
        <property type="entry name" value="SSF51735"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="2-Hacid_dh_C" evidence="1">
        <location>
            <begin position="101"/>
            <end position="271"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF02826"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX38597.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="306" mass="33309" checksum="5E5D29CFDE5EB973" modified="2008-01-15" version="1">MRVTFCCEDTRPDAWLQGLRAALPGAEVDIWSPGAPQADYALVWAPPQRFIDEQPGLKAVFNIGAGVDALLPLRLPPDLPVYRLEDAGMAVQMAEYVSQAVIRFFRGLDGYEADMAAGLWQHRPNPRRADYPVGVMGLGRMGERVARALTVFDFPVNGWSRTPHAIDGVRGFCGPQDFDAFLRATRILVNLLPLTPETDSIIDARSLALLQPGAYVINVARGGHVADEDLIAAIDGGHVTGALLDVFRTEPLPDGHAFWRHPRITLTPHTSARTLARDSVEQIVGKVAALSRGEAVSGRVDLQCGY</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="57" xmlns="http://uniprot.org/uniprot">
    <accession>A9C1P4</accession>
    <name>A9C1P4_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Phage major tail tube protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Daci_2591</name>
        <name evidence="2" type="ordered locus">Daci_2625</name>
    </gene>
    <organism evidence="1 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
            <strain evidence="1">SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="1" key="3">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX35229.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX35263.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012204508.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_2591"/>
    <dbReference type="PRIDE" id="A9C1P4"/>
    <dbReference type="EnsemblBacteria" id="ABX35229">
        <property type="protein sequence ID" value="ABX35229"/>
        <property type="gene ID" value="Daci_2591"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="ABX35263">
        <property type="protein sequence ID" value="ABX35263"/>
        <property type="gene ID" value="Daci_2625"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_2591"/>
    <dbReference type="KEGG" id="dac:Daci_2625"/>
    <dbReference type="eggNOG" id="COG3498">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_130297_2_1_4"/>
    <dbReference type="OMA" id="TYYKLEV"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006498">
        <property type="entry name" value="Tail_tube"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR35861:SF2">
        <property type="entry name" value="PTHR35861:SF2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04985">
        <property type="entry name" value="Phage_tube"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01611">
        <property type="entry name" value="tail_tube"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ABX35229.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX35263.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="169" mass="18454" checksum="23AD444D31A88D6B" modified="2008-01-15" version="1">MGLPRSLKNFATFVDGNSYIGDMPEVGLPKLTRKMEKYRAGGMNGEVSLDFGMEAIEADLTAAGYMKELISTWGTLRHDGVLLRFAGALQGDDSEGVDSLEVVMRGRFSEFDPGKAKAGDKTEIKYKLAVSYYRLSINGQVLIEIDPVNFVEVVNGIDRLAQVRAALGI</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-01-19" version="39" xmlns="http://uniprot.org/uniprot">
    <accession>A9C1Q0</accession>
    <name>A9C1Q0_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Daci_2597</name>
        <name evidence="2" type="ordered locus">Daci_2631</name>
    </gene>
    <organism evidence="1 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
            <strain evidence="1">SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="1" key="3">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX35235.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX35269.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_2597"/>
    <dbReference type="EnsemblBacteria" id="ABX35235">
        <property type="protein sequence ID" value="ABX35235"/>
        <property type="gene ID" value="Daci_2597"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="ABX35269">
        <property type="protein sequence ID" value="ABX35269"/>
        <property type="gene ID" value="Daci_2631"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_2597"/>
    <dbReference type="KEGG" id="dac:Daci_2631"/>
    <dbReference type="HOGENOM" id="CLU_1515503_0_0_4"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ABX35235.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX35269.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="177" mass="18789" checksum="1EED997803F4186C" modified="2008-01-15" version="1">MHDDKTAQGWPLPHPDNRLEDDVLRLRQAVQDVDQALTAARQLIDTKASSQGVQDAMDIVARRIEQLETATQALSTGKVASVNGVAGVNVKLNPEHIALGPANGATSESFGYDAQGRISSITRSVNGFSATTAVSYDGAGRVSQQQTSYRGRVRTETYAYDAATGRVSGVNATEVQG</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="73" xmlns="http://uniprot.org/uniprot">
    <accession>A9C1X2</accession>
    <name>A9C1X2_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="2 6">Superoxide dismutase</fullName>
            <ecNumber evidence="2 6">1.15.1.1</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="9" type="ordered locus">Daci_2970</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="9 10" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="10" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="6">Destroys radicals which are normally produced within the cells and which are toxic to biological systems.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="6">
            <text>2 H(+) + 2 superoxide = H2O2 + O2</text>
            <dbReference type="Rhea" id="RHEA:20696"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:15379"/>
            <dbReference type="ChEBI" id="CHEBI:16240"/>
            <dbReference type="ChEBI" id="CHEBI:18421"/>
            <dbReference type="EC" id="1.15.1.1"/>
        </reaction>
    </comment>
    <comment type="similarity">
        <text evidence="1 6">Belongs to the iron/manganese superoxide dismutase family.</text>
    </comment>
    <dbReference type="EC" id="1.15.1.1" evidence="2 6"/>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX35608.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012204818.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_2970"/>
    <dbReference type="PRIDE" id="A9C1X2"/>
    <dbReference type="EnsemblBacteria" id="ABX35608">
        <property type="protein sequence ID" value="ABX35608"/>
        <property type="gene ID" value="Daci_2970"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_2970"/>
    <dbReference type="eggNOG" id="COG0605">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_031625_0_1_4"/>
    <dbReference type="OMA" id="YEGWKGE"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004784">
        <property type="term" value="F:superoxide dismutase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.287.990">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.55.40.20">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001189">
        <property type="entry name" value="Mn/Fe_SOD"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019833">
        <property type="entry name" value="Mn/Fe_SOD_BS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019832">
        <property type="entry name" value="Mn/Fe_SOD_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019831">
        <property type="entry name" value="Mn/Fe_SOD_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036324">
        <property type="entry name" value="Mn/Fe_SOD_N_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036314">
        <property type="entry name" value="SOD_C_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02777">
        <property type="entry name" value="Sod_Fe_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00081">
        <property type="entry name" value="Sod_Fe_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF000349">
        <property type="entry name" value="SODismutase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR01703">
        <property type="entry name" value="MNSODISMTASE"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46609">
        <property type="entry name" value="SSF46609"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54719">
        <property type="entry name" value="SSF54719"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00088">
        <property type="entry name" value="SOD_MN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3 5 6" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="4 6 9" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Sod_Fe_N" evidence="7">
        <location>
            <begin position="3"/>
            <end position="90"/>
        </location>
    </feature>
    <feature type="domain" description="Sod_Fe_C" evidence="8">
        <location>
            <begin position="100"/>
            <end position="205"/>
        </location>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <position position="28"/>
        </location>
        <ligand>
            <name>a divalent metal cation</name>
            <dbReference type="ChEBI" id="CHEBI:60240"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <position position="82"/>
        </location>
        <ligand>
            <name>a divalent metal cation</name>
            <dbReference type="ChEBI" id="CHEBI:60240"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <position position="172"/>
        </location>
        <ligand>
            <name>a divalent metal cation</name>
            <dbReference type="ChEBI" id="CHEBI:60240"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <position position="176"/>
        </location>
        <ligand>
            <name>a divalent metal cation</name>
            <dbReference type="ChEBI" id="CHEBI:60240"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00008714"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00012682"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023002"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="PIRSR" id="PIRSR000349-1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="RuleBase" id="RU000414"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="Pfam" id="PF00081"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="Pfam" id="PF02777"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="ABX35608.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="211" mass="22812" checksum="50A6262EA0EE4E95" modified="2008-01-15" version="1">MSNYTLPPLNYAYDALEPHIDAQTMEIHYTKHHQAYVNNLNAALKDTPHGSQPVEQLIADLSLLPEGVRGAVRNNGGGHANHSLFWTVMAPVDQGGGGAPSGELAQAIDRELGGFDAFKAAFTQAALTRFGSGWAWLVVGKDGKLAVESSGNQDSPLMAGIGSGATPILGLDVWEHAYYLKYQNRRPEYIAAFYNVVNWAEVARRYAAARG</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="53" xmlns="http://uniprot.org/uniprot">
    <accession>A9C203</accession>
    <name>A9C203_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Putative transmembrane anti-sigma factor</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_3001</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX35639.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012204845.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_3001"/>
    <dbReference type="PRIDE" id="A9C203"/>
    <dbReference type="EnsemblBacteria" id="ABX35639">
        <property type="protein sequence ID" value="ABX35639"/>
        <property type="gene ID" value="Daci_3001"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_3001"/>
    <dbReference type="eggNOG" id="COG5662">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_083880_0_0_4"/>
    <dbReference type="OMA" id="FAHYRAQ"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0812">Transmembrane</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="21"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX35639.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="279" mass="30333" checksum="CD676F79DF0A15A0" modified="2008-01-15" version="1">MTASAPTPLSSSSPLPPPISDEQLHALVDGRLPAQQAQALRDQLDEDSAARVEQWQRQRQLLRALPAARDEPGMPDEMRAAAEQLQGLHQRQQQWWRWGGMAAGWMLAFGLGWLVHGQQAVPAAAPSTAATLAAASPARFAHQAAVAHAVYQPEQRHPVEVEAAQQAHLLQWLSKRLGRPLKLPALTDLGYELVGGRLLPGDSGARAQFMYQDAAGERITLYLGALEDPATRGETAFHFSSDGPVPSFYWVDQGFGYALSGALPRNQLLQLATAVHQQL</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="61" xmlns="http://uniprot.org/uniprot">
    <accession>A9C227</accession>
    <name>A9C227_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Extracellular ligand-binding receptor</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ordered locus">Daci_3025</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="6" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the leucine-binding protein family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX35663.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012204869.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_3025"/>
    <dbReference type="PRIDE" id="A9C227"/>
    <dbReference type="EnsemblBacteria" id="ABX35663">
        <property type="protein sequence ID" value="ABX35663"/>
        <property type="gene ID" value="Daci_3025"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_3025"/>
    <dbReference type="eggNOG" id="COG0683">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_027128_6_0_4"/>
    <dbReference type="OMA" id="VRIRTQM"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006865">
        <property type="term" value="P:amino acid transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR028081">
        <property type="entry name" value="Leu-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000709">
        <property type="entry name" value="Leu_Ile_Val-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR028082">
        <property type="entry name" value="Peripla_BP_I"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13458">
        <property type="entry name" value="Peripla_BP_6"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00337">
        <property type="entry name" value="LEUILEVALBP"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53822">
        <property type="entry name" value="SSF53822"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2" id="KW-0029">Amino-acid transport</keyword>
    <keyword evidence="5" id="KW-0675">Receptor</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0732">Signal</keyword>
    <keyword evidence="2" id="KW-0813">Transport</keyword>
    <feature type="signal peptide" evidence="3">
        <location>
            <begin position="1"/>
            <end position="36"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5002735310" evidence="3">
        <location>
            <begin position="37"/>
            <end position="382"/>
        </location>
    </feature>
    <feature type="domain" description="Peripla_BP_6" evidence="4">
        <location>
            <begin position="39"/>
            <end position="377"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00010062"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022970"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="Pfam" id="PF13458"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="ABX35663.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="382" mass="40195" checksum="8032A8038D36AAC2" modified="2008-01-15" version="1">MQAFTTTTALLPSRRRLAASALALAAATLACGAAWSQSTVKLGFIGPVSGGNAQQGLGAKNGFLLAIDQWNATAGVPFKVEGVVLDDASDPQTGVSAALKLVNDRDVVGAIGHWNSPVALATLPVFNRVQMPFIVWGAIGPKITDQNFANTTRVTPTLVNENKPLATWAATGLGARKIAIIADTSDYGRANLASFGSFYKAEKGSVVAEESYPVGTTDFRSILTKIKSLNPDAVYFGGVITEAGIVRKQMAELGMKQPMLGISGIFDPQLIQIAGPAADGTIVGTPKSQTNPRLDAMSRAYAAKGYADSESPYTKYAYDATGILLQSLKTAGTKDRQAVAKAIRAIRYDGVTGTVTFDANGQTQVPVELQLHEVKDGKWASR</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="52" xmlns="http://uniprot.org/uniprot">
    <accession>A9C251</accession>
    <name>A9C251_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_3049</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX35687.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012204893.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_3049"/>
    <dbReference type="PRIDE" id="A9C251"/>
    <dbReference type="EnsemblBacteria" id="ABX35687">
        <property type="protein sequence ID" value="ABX35687"/>
        <property type="gene ID" value="Daci_3049"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_3049"/>
    <dbReference type="eggNOG" id="COG3333">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_022936_2_0_4"/>
    <dbReference type="OMA" id="QQPDIVW"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002823">
        <property type="entry name" value="DUF112_TM"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01970">
        <property type="entry name" value="TctA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="20"/>
            <end position="39"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="60"/>
            <end position="82"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="147"/>
            <end position="163"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="169"/>
            <end position="188"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="200"/>
            <end position="223"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="259"/>
            <end position="283"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="319"/>
            <end position="343"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="355"/>
            <end position="382"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="389"/>
            <end position="408"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="414"/>
            <end position="443"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="464"/>
            <end position="487"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX35687.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="504" mass="52902" checksum="646A8A5C1D7C61E5" modified="2008-01-15" version="1">MDELQYLAHGFAAVTTWQNTGLMLTGILLGIVVGVLPGLGGPNGVAILLPLTFGMSPTSAIILLSCIYWGALFGGAITSVLFNIPGEAWSVATTFDGYPMAQQGHAGAALTTAFTGSFIGAISGVMLITFLAPVVASFALQFGPPEFFAVFFLTFCSFIGMGKEPKAKIVAAMAVGLLLAAVGMDTISGDLRMTFGSTELLRGFDFLVVVIGLFGISEILMTIEEGLAFKGKKASIDLKVVFRTWAQLPRYWLTMLRSALVGCWMGVTPGGAVAASFMGYGLAKKFSRDPDSFGKGTPEGVLAPETAAHAAGTSALLPMLALGIPGSATAAVLLGGLMIWGLQPGPLLFTEQKDFVWGLIASMYLGNIAGLVIVMATVPLFAAILRVPFSIVAPMILMVCAIGAFTVHGNATDIWLMLVFGVVGYVFKKLDYPLAPMVLAIVLGDRMEDAFRQSMLSSQGALGIFWHNGLSGTITTLALLMLVWPLLGKLRAMAFGARARAVAA</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="45" xmlns="http://uniprot.org/uniprot">
    <accession>A9C2H4</accession>
    <name>A9C2H4_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Daci_3482</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="2" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX36118.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_3482"/>
    <dbReference type="PRIDE" id="A9C2H4"/>
    <dbReference type="EnsemblBacteria" id="ABX36118">
        <property type="protein sequence ID" value="ABX36118"/>
        <property type="gene ID" value="Daci_3482"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_3482"/>
    <dbReference type="eggNOG" id="ENOG5032MZ8">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_102469_0_0_4"/>
    <dbReference type="OMA" id="LSYARWP"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025293">
        <property type="entry name" value="YfiR/HmsC-like"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13689">
        <property type="entry name" value="DUF4154"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ABX36118.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="220" mass="24281" checksum="C0CE6719D08ED6D1" modified="2008-01-15" version="1">MLQCASVAQCMDIPFKEPWLAARTHRIHHTYRRWGMDCRIKGLSARAWLVVGLLALQAGLVGHAHAEPAADEHELGVTRTVVGILGYTRWPTESPVLRLCVVGSTEYADDLLNGAPQTVGSQRLEVRRVAPVDARALVECEGIYAGQLDEAAWRKLMEQLAGRPLLTISERGELCRIGAMFCLRRRGEGAGFEVSLDSVARSGLRVNPKVLQLARHRTLP</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="60" xmlns="http://uniprot.org/uniprot">
    <accession>A9C2I2</accession>
    <name>A9C2I2_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ordered locus">Daci_3699</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="5" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Periplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the UPF0065 (bug) family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX36331.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012205527.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_3699"/>
    <dbReference type="PRIDE" id="A9C2I2"/>
    <dbReference type="EnsemblBacteria" id="ABX36331">
        <property type="protein sequence ID" value="ABX36331"/>
        <property type="gene ID" value="Daci_3699"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_3699"/>
    <dbReference type="eggNOG" id="COG3181">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_045683_0_1_4"/>
    <dbReference type="OMA" id="GHLGGEW"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0042597">
        <property type="term" value="C:periplasmic space"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.190.150">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005064">
        <property type="entry name" value="BUG"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR042100">
        <property type="entry name" value="Bug_dom1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006311">
        <property type="entry name" value="TAT_signal"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR42928">
        <property type="entry name" value="PTHR42928"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03401">
        <property type="entry name" value="TctC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF017082">
        <property type="entry name" value="YflP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51318">
        <property type="entry name" value="TAT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="3">
        <location>
            <begin position="1"/>
            <end position="39"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5002732781" evidence="3">
        <location>
            <begin position="40"/>
            <end position="345"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004418"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00006987"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="ABX36331.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="345" mass="36902" checksum="6AC7DE2C224CC513" modified="2008-01-15" version="1">MKASPSSRLGAAPSRRKALAGAALLLASIAPLHCAWAQAGSSSAASFPTRPVTVITAFAVGSGPDAVLRIVGEKLAARWKQGVTVDNRPGGGGFVAIEAARRAKPDGYTLLQLDSEHVSALPYLYKQRNFHPLQHFDPVAPLFLTPFFVAVPTNSPWKSMGDLIKAAKSEPGKVSYGSWGVGSPGHLGGEWLDFLTGSKMTHVPYREVSQLYTSVANGDPAWSFASIPSSQGIYKSGKIRYLAVAAPQRIAQMPDVPTVAESGGPADLIVNSFVSLLAPKGVDAALRDRIHADVVAVLQDPQVREKFATFAFQPITWEVPEMEKFAKTKADQYKLLIQKANISLD</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="80" xmlns="http://uniprot.org/uniprot">
    <accession>A9C2M1</accession>
    <name>A9C2M1_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="10">TonB-dependent receptor</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="10" type="ordered locus">Daci_3738</name>
    </gene>
    <organism evidence="10 11">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="10 11" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="11">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="11" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="11">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="7">Cell outer membrane</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="1 7">Belongs to the TonB-dependent receptor family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX36370.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012205564.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_3738"/>
    <dbReference type="PRIDE" id="A9C2M1"/>
    <dbReference type="EnsemblBacteria" id="ABX36370">
        <property type="protein sequence ID" value="ABX36370"/>
        <property type="gene ID" value="Daci_3738"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_3738"/>
    <dbReference type="eggNOG" id="COG4771">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_008287_18_0_4"/>
    <dbReference type="OMA" id="LFNIARC"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009279">
        <property type="term" value="C:cell outer membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006811">
        <property type="term" value="P:ion transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="GO" id="GO:0071702">
        <property type="term" value="P:organic substance transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.170.130.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.170.20">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR039426">
        <property type="entry name" value="BtuB-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012910">
        <property type="entry name" value="Plug_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037066">
        <property type="entry name" value="Plug_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000531">
        <property type="entry name" value="TonB-dep_rcpt_b-brl"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036942">
        <property type="entry name" value="TonB_rcpt_b-brl_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010917">
        <property type="entry name" value="TonB_rcpt_CS"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30069">
        <property type="entry name" value="PTHR30069"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07715">
        <property type="entry name" value="Plug"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00593">
        <property type="entry name" value="TonB_dep_Rec"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01156">
        <property type="entry name" value="TONB_DEPENDENT_REC_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="6" id="KW-0998">Cell outer membrane</keyword>
    <keyword evidence="4 7" id="KW-0472">Membrane</keyword>
    <keyword evidence="5 10" id="KW-0675">Receptor</keyword>
    <keyword evidence="11" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0732">Signal</keyword>
    <keyword evidence="3 7" id="KW-0798">TonB box</keyword>
    <feature type="domain" description="Plug" evidence="9">
        <location>
            <begin position="29"/>
            <end position="141"/>
        </location>
    </feature>
    <feature type="domain" description="TonB_dep_Rec" evidence="8">
        <location>
            <begin position="207"/>
            <end position="663"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00009810"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022729"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023077"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023170"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023237"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="RuleBase" id="RU003357"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="Pfam" id="PF00593"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="9">
        <source>
            <dbReference type="Pfam" id="PF07715"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="EMBL" id="ABX36370.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="665" mass="72337" checksum="F6477ABAABFC4CDD" modified="2008-01-15" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2021-06-02" version="42" xmlns="http://uniprot.org/uniprot">
    <accession>A9C2X0</accession>
    <name>A9C2X0_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Daci_4143</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="2" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX36774.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012205954.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_4143"/>
    <dbReference type="EnsemblBacteria" id="ABX36774">
        <property type="protein sequence ID" value="ABX36774"/>
        <property type="gene ID" value="Daci_4143"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_4143"/>
    <dbReference type="eggNOG" id="ENOG5032U3U">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_196073_0_0_4"/>
    <dbReference type="OMA" id="HMANAHE"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ABX36774.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="82" mass="8849" checksum="656EB5B2BDF97664" modified="2008-01-15" version="1">MANAHELARGHSRLRALIEFAVGEGWHVKRTAGGHLKFTKAGCAAIYTSSTASDHRAALNARAQIRRAERETRSQAQGGGHD</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="51" xmlns="http://uniprot.org/uniprot">
    <accession>A9C2Z2</accession>
    <name>A9C2Z2_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Daci_4165</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="4" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX36796.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012205974.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_4165"/>
    <dbReference type="PRIDE" id="A9C2Z2"/>
    <dbReference type="EnsemblBacteria" id="ABX36796">
        <property type="protein sequence ID" value="ABX36796"/>
        <property type="gene ID" value="Daci_4165"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_4165"/>
    <dbReference type="eggNOG" id="ENOG502Z87B">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_108020_1_0_4"/>
    <dbReference type="OMA" id="QIYLIRQ"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="121"/>
            <end position="147"/>
        </location>
    </feature>
    <feature type="coiled-coil region" evidence="1">
        <location>
            <begin position="51"/>
            <end position="97"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ABX36796.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="213" mass="23077" checksum="CC1B753F915F7EFD" modified="2008-01-15" version="1">MNTAQAPRRPISAVVLQSLMWLWLISLSVFAALSYQTMNDQADQTLLDSRLQRLEAQAVGLAETIEAIQQRPVVATAADLKDTRERLEARAAQVETTLSGYAAAEDLQALRAEVEQIKARPSALRAAAPAQPRSPSRPTAKPEPPPLPFRIVGAELRAGQRSLSVTPNNGNFTPDQLQVLLPGDAVGPWRLQAVEGNTAVFQAGDQTRRMAIP</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="57" xmlns="http://uniprot.org/uniprot">
    <accession>A9C322</accession>
    <name>A9C322_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Serine/threonine protein kinase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_4195</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX36826.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012205999.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_4195"/>
    <dbReference type="PRIDE" id="A9C322"/>
    <dbReference type="EnsemblBacteria" id="ABX36826">
        <property type="protein sequence ID" value="ABX36826"/>
        <property type="gene ID" value="Daci_4195"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_4195"/>
    <dbReference type="eggNOG" id="COG0515">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_043137_0_0_4"/>
    <dbReference type="OMA" id="DNHHMAL"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004674">
        <property type="term" value="F:protein serine/threonine kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006468">
        <property type="term" value="P:protein phosphorylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011009">
        <property type="entry name" value="Kinase-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000719">
        <property type="entry name" value="Prot_kinase_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00069">
        <property type="entry name" value="Pkinase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56112">
        <property type="entry name" value="SSF56112"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50011">
        <property type="entry name" value="PROTEIN_KINASE_DOM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0418">Kinase</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0723">Serine/threonine-protein kinase</keyword>
    <keyword evidence="2" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Protein kinase" evidence="1">
        <location>
            <begin position="20"/>
            <end position="348"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS50011"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX36826.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="447" mass="49726" checksum="C02EC2F7349A4D69" modified="2008-01-15" version="1">MSNAEHQALKPLVDEYNNVHQMADELARGGQGVVYRTKDADLAVKQPLDAAGQPDKNANLRERFQHVRLLPIPRRIPVSLPLAILRDEPGYVMRLLNGMKPFASFDLDGRSKKKLEDQSQALPQWLTKIPDKDLALRLLHYAQTGSTRRRSLALAKCAAILARLHSAGLVYGDISTNNAFIGEDDTTDVWLIDADNMRLELPSGGVSVYTPGYGAPEVVQGRDQSRPRTDCWAFAVMTFKLLALCHPFIGKKVLEPEDEEDGWDADPAPNGTATDLNEQAFAGFLPFVDDEDDDSNEGVGGLPRVLVATEGLRRLFQETFGAGRELPHRRPTMAFWTLELARAADQSLDCLECGMSHFADEYAQCPYCGAARPAFIRVKTPRWEILIPGGATEFRLPQRLFHPFSFEYFDNTAYEAMLNCAAKTAVPVRGTLPFPDNLTFEFVEGCK</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="28" xmlns="http://uniprot.org/uniprot">
    <accession>A9C3L9</accession>
    <name>A9C3L9_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_4701</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX37330.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_4701"/>
    <dbReference type="PRIDE" id="A9C3L9"/>
    <dbReference type="EnsemblBacteria" id="ABX37330">
        <property type="protein sequence ID" value="ABX37330"/>
        <property type="gene ID" value="Daci_4701"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_4701"/>
    <dbReference type="HOGENOM" id="CLU_1265227_0_0_4"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="40"/>
            <end position="81"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX37330.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="218" mass="23495" checksum="599220DD4F27F8E9" modified="2008-01-15" version="1">MRLHAAAIRRRLHARRMRLGAGAIRRPALCRHLPPLTATTTGPAIGTTRCATPSRWPTPTPWQHSTPAGHPSPSVPRGLSSSTARATRYTAFCTLTQPRPDPATSQETTMARQIIIAISADDEGRVALTTNLPRPVPGRGLQTEDAAALELLRMAQHLPNLETTTYDASHLAPDAAEAFDLLRELINPDGFGYSVTAEVGNAARRVLQIKGQQVGLPL</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="53" xmlns="http://uniprot.org/uniprot">
    <accession>A9BLE3</accession>
    <name>A9BLE3_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Daci_3796</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="2" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX36428.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_3796"/>
    <dbReference type="PRIDE" id="A9BLE3"/>
    <dbReference type="EnsemblBacteria" id="ABX36428">
        <property type="protein sequence ID" value="ABX36428"/>
        <property type="gene ID" value="Daci_3796"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_3796"/>
    <dbReference type="eggNOG" id="COG3826">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_073550_0_0_4"/>
    <dbReference type="OMA" id="MARHRFG"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018655">
        <property type="entry name" value="DUF2086"/>
    </dbReference>
    <dbReference type="Pfam" id="PF09859">
        <property type="entry name" value="Oxygenase-NA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ABX36428.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="327" mass="36741" checksum="F6B67CA2DD31E3B0" modified="2008-01-15" version="1">MLDMAGLRRLQECRDCSIAAASRPSQACPAGGWQALPPVDILSTARSGMQALRRSPRLRQLPTAPIPPTPPIPPTAPIPQTPPAMHNLGLFDNEACESAPPCHWTQMEHQLDEQGCARLRGLLDAQQCRDLAALYAREDGFRSRIVMARHGFGRGEYQYFDYPLPPLLQRLREQLYLRLAPVANLWNQRMGLEVRYPDRLQDFLARCHAQGQLRPTPLILQYGVGDYNCLHQDVYGEHVFPLQVVLLLSRPGRDFTGGEFVITQADGDRQRADVMALDQGDALVLAVRHRPVPGRRTGYRRVAMRHGVSRIHSGHRHTVGLIFHDAL</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="67" xmlns="http://uniprot.org/uniprot">
    <accession>A9BLP1</accession>
    <name>A9BLP1_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="8">Major facilitator superfamily MFS_1</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="8" type="ordered locus">Daci_3895</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="9" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX36526.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012205720.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_3895"/>
    <dbReference type="PRIDE" id="A9BLP1"/>
    <dbReference type="EnsemblBacteria" id="ABX36526">
        <property type="protein sequence ID" value="ABX36526"/>
        <property type="gene ID" value="Daci_3895"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_3895"/>
    <dbReference type="eggNOG" id="COG0477">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_000960_2_6_4"/>
    <dbReference type="OMA" id="MWGIATL"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0022857">
        <property type="term" value="F:transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.1250.20">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011701">
        <property type="entry name" value="MFS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020846">
        <property type="entry name" value="MFS_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036259">
        <property type="entry name" value="MFS_trans_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07690">
        <property type="entry name" value="MFS_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF103473">
        <property type="entry name" value="SSF103473"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50850">
        <property type="entry name" value="MFS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4 6" id="KW-0472">Membrane</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 6" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="3 6" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="46"/>
            <end position="69"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="81"/>
            <end position="104"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="111"/>
            <end position="130"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="136"/>
            <end position="158"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="170"/>
            <end position="192"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="198"/>
            <end position="216"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="237"/>
            <end position="254"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="260"/>
            <end position="280"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="292"/>
            <end position="316"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="322"/>
            <end position="344"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="356"/>
            <end position="380"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="386"/>
            <end position="410"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="422"/>
            <end position="446"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="452"/>
            <end position="472"/>
        </location>
    </feature>
    <feature type="domain" description="MFS" evidence="7">
        <location>
            <begin position="47"/>
            <end position="476"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="5">
        <location>
            <begin position="1"/>
            <end position="22"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
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        <source>
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    </evidence>
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        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
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        <source>
            <dbReference type="PROSITE" id="PS50850"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="ABX36526.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="483" mass="49328" checksum="2E7A99ADFC00DC20" modified="2008-01-15" version="1">MALRHGRRRPCNQEASMPHQDSLTLDDQVRPTTTKSWSILSSPYRLTTIGIVSLVALIAFEALAVATAMPAVARALDGVPLYAVAFGVTLATSVVGMTVAGGWCDARGPAAPLWSGMACFVAGLLLAGFAPSMPVFLAGRLVQGLGAGGMSVALYVLVGRRYPEALRRRIFAAFATAWVVPALVGPALSGLVVEHLGWRWVFLGVPLLALPAGAMLRPALQGLGGHGQGMQGGVRRGLWALGAATGICLLYVGGQRQSAGALGAVAVAAALSLVCTWKLLPAGTLRAGRGLPSVIALRGLVFAAFFGAEAFLPLVLAREHGLSAPMAGLVLSAGALGWCSASWYQGHSRNGWSRHRFLRVGTSAVLAGVLLTASVAWPAVPVWVSVVGWIVSGLGMGLLSASLSVLTLSMSAPGEQGANSSALQLCEAIAVAATLAIGGSLFAALLETSAQAAYLANFGVAAGAAVLAAVIVGRTDTRQVFVG</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="64" xmlns="http://uniprot.org/uniprot">
    <accession>A9BLP6</accession>
    <name>A9BLP6_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Type III restriction protein res subunit</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Daci_4204</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="4" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX36835.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_008266576.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_4204"/>
    <dbReference type="REBASE" id="16644">
        <property type="entry name" value="DacSPHORF4205P"/>
    </dbReference>
    <dbReference type="PRIDE" id="A9BLP6"/>
    <dbReference type="EnsemblBacteria" id="ABX36835">
        <property type="protein sequence ID" value="ABX36835"/>
        <property type="gene ID" value="Daci_4204"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_4204"/>
    <dbReference type="eggNOG" id="COG3587">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_011799_0_0_4"/>
    <dbReference type="OMA" id="ELWQTIN"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015668">
        <property type="term" value="F:type III site-specific deoxyribonuclease activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006935">
        <property type="entry name" value="Helicase/UvrB_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045572">
        <property type="entry name" value="RE_endonuc_C"/>
    </dbReference>
    <dbReference type="Pfam" id="PF19778">
        <property type="entry name" value="RE_endonuc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04851">
        <property type="entry name" value="ResIII"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="ResIII" evidence="1">
        <location>
            <begin position="10"/>
            <end position="251"/>
        </location>
    </feature>
    <feature type="domain" description="RE_endonuc" evidence="2">
        <location>
            <begin position="881"/>
            <end position="978"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF04851"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF19778"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ABX36835.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="1001" mass="112132" checksum="53E9236592B9894F" modified="2008-01-15" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="84" xmlns="http://uniprot.org/uniprot">
    <accession>A9BLY6</accession>
    <name>A9BLY6_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">Histidine kinase</fullName>
            <ecNumber evidence="2">2.7.13.3</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="9" type="ordered locus">Daci_4294</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="9 10" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="10" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>ATP + protein L-histidine = ADP + protein N-phospho-L-histidine.</text>
            <dbReference type="EC" id="2.7.13.3"/>
        </reaction>
    </comment>
    <dbReference type="EC" id="2.7.13.3" evidence="2"/>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX36925.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012206097.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_4294"/>
    <dbReference type="PRIDE" id="A9BLY6"/>
    <dbReference type="EnsemblBacteria" id="ABX36925">
        <property type="protein sequence ID" value="ABX36925"/>
        <property type="gene ID" value="Daci_4294"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_4294"/>
    <dbReference type="eggNOG" id="COG4191">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_000445_94_2_4"/>
    <dbReference type="OMA" id="SNWREPT"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000155">
        <property type="term" value="F:phosphorelay sensor kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd00082">
        <property type="entry name" value="HisKA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.565.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003594">
        <property type="entry name" value="HATPase_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036890">
        <property type="entry name" value="HATPase_C_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005467">
        <property type="entry name" value="His_kinase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003661">
        <property type="entry name" value="HisK_dim/P"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036097">
        <property type="entry name" value="HisK_dim/P_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029151">
        <property type="entry name" value="Sensor-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004358">
        <property type="entry name" value="Sig_transdc_His_kin-like_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017055">
        <property type="entry name" value="Sig_transdc_His_kinase_DctB"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02518">
        <property type="entry name" value="HATPase_c"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00512">
        <property type="entry name" value="HisKA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF036431">
        <property type="entry name" value="STHK_DctB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00344">
        <property type="entry name" value="BCTRLSENSOR"/>
    </dbReference>
    <dbReference type="SMART" id="SM00387">
        <property type="entry name" value="HATPase_c"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00388">
        <property type="entry name" value="HisKA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF103190">
        <property type="entry name" value="SSF103190"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47384">
        <property type="entry name" value="SSF47384"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55874">
        <property type="entry name" value="SSF55874"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50109">
        <property type="entry name" value="HIS_KIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="7" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="9" id="KW-0418">Kinase</keyword>
    <keyword evidence="6" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-0597">Phosphoprotein</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="9" id="KW-0808">Transferase</keyword>
    <keyword evidence="5" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="6" id="KW-1133">Transmembrane helix</keyword>
    <feature type="domain" description="Histidine kinase" evidence="8">
        <location>
            <begin position="405"/>
            <end position="618"/>
        </location>
    </feature>
    <feature type="coiled-coil region" evidence="7">
        <location>
            <begin position="334"/>
            <end position="389"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00000085"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00012438"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022553"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="PROSITE" id="PS50109"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="ABX36925.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="626" mass="67661" checksum="B6C0446014BE7993" modified="2008-01-15" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2021-09-29" version="51" xmlns="http://uniprot.org/uniprot">
    <accession>A9BM23</accession>
    <name>A9BM23_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Putative transmembrane protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Daci_4739</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="4" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX37368.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012206538.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_4739"/>
    <dbReference type="EnsemblBacteria" id="ABX37368">
        <property type="protein sequence ID" value="ABX37368"/>
        <property type="gene ID" value="Daci_4739"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_4739"/>
    <dbReference type="eggNOG" id="COG1055">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_034923_0_0_4"/>
    <dbReference type="OMA" id="WGVPFAG"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR031566">
        <property type="entry name" value="CitMHS_2"/>
    </dbReference>
    <dbReference type="Pfam" id="PF16980">
        <property type="entry name" value="CitMHS_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0732">Signal</keyword>
    <keyword evidence="1 3" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="signal peptide" evidence="2">
        <location>
            <begin position="1"/>
            <end position="21"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5002732302" evidence="2">
        <location>
            <begin position="22"/>
            <end position="475"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="31"/>
            <end position="51"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="63"/>
            <end position="92"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="127"/>
            <end position="153"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="165"/>
            <end position="184"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="204"/>
            <end position="223"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="258"/>
            <end position="276"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="282"/>
            <end position="308"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="329"/>
            <end position="347"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="373"/>
            <end position="394"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="406"/>
            <end position="429"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="454"/>
            <end position="474"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ABX37368.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="475" mass="50385" checksum="BC138D8860B9138A" modified="2008-01-15" version="1">MKALRGLLVLLVACVPSWALAAEIDGGQLSVLWGVPFAGMLLSIALVPLVAPHFWHRHFGKLTAAWALAFLLPFAAVFGAGAALVNLVHALLAEYLPFVILLTALYTVSGGIYVRGNLKGSPGLNTAILAIGAVLASFMGTTGASMLLIRPLLRANDNRRHQVHVVVFFIFIVSNAGGSLTPLGDPPLFLGFLKGVDFFWTVRHIFTETLFLVGVLLALFYAIDTWLLRKAGEADLPDPTPSIDASGRASRLGFDGSVNFALLLAVVALVLMSGLWRTDAGLVLAGTHVGLPGLVRDAGLIVVALLSLRLTPRSVHQANEFGWGPMQEVAKLFAGIFLTIIPVIAMLKAGTGGPFGAIVGAVTRADGTPDPLMYFWATGLLSSFLDNAPTYLVFFNTAGGDAAQLMTTMASTLAAISAGAVFMGANTYIGNAPNLMVKAIAEERGVKMPSFFGYMAWSLGILVPLFVLMSFIWFR</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="82" xmlns="http://uniprot.org/uniprot">
    <accession>A9BMD9</accession>
    <name>A9BMD9_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">Peptide deformylase</fullName>
            <shortName evidence="2">PDF</shortName>
            <ecNumber evidence="2">3.5.1.88</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="2">Polypeptide deformylase</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="2" type="primary">def</name>
        <name evidence="3" type="ordered locus">Daci_4855</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="4" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="2">Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="2">
            <text>H2O + N-terminal N-formyl-L-methionyl-[peptide] = formate + N-terminal L-methionyl-[peptide]</text>
            <dbReference type="Rhea" id="RHEA:24420"/>
            <dbReference type="Rhea" id="RHEA-COMP:10639"/>
            <dbReference type="Rhea" id="RHEA-COMP:10640"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:15740"/>
            <dbReference type="ChEBI" id="CHEBI:49298"/>
            <dbReference type="ChEBI" id="CHEBI:64731"/>
            <dbReference type="EC" id="3.5.1.88"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="2">
            <name>Fe(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29033"/>
        </cofactor>
        <text evidence="2">Binds 1 Fe(2+) ion.</text>
    </comment>
    <comment type="similarity">
        <text evidence="1 2">Belongs to the polypeptide deformylase family.</text>
    </comment>
    <dbReference type="EC" id="3.5.1.88" evidence="2"/>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX37484.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012206654.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_4855"/>
    <dbReference type="PRIDE" id="A9BMD9"/>
    <dbReference type="EnsemblBacteria" id="ABX37484">
        <property type="protein sequence ID" value="ABX37484"/>
        <property type="gene ID" value="Daci_4855"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_4855"/>
    <dbReference type="eggNOG" id="COG0242">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_061901_5_2_4"/>
    <dbReference type="OMA" id="ILYPMRI"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0042586">
        <property type="term" value="F:peptide deformylase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006412">
        <property type="term" value="P:translation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd00487">
        <property type="entry name" value="Pep_deformylase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.45.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00163">
        <property type="entry name" value="Pep_deformylase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023635">
        <property type="entry name" value="Peptide_deformylase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036821">
        <property type="entry name" value="Peptide_deformylase_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10458">
        <property type="entry name" value="PTHR10458"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01327">
        <property type="entry name" value="Pep_deformylase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF004749">
        <property type="entry name" value="Pep_def"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR01576">
        <property type="entry name" value="PDEFORMYLASE"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56420">
        <property type="entry name" value="SSF56420"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00079">
        <property type="entry name" value="pept_deformyl"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2 3" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="2" id="KW-0408">Iron</keyword>
    <keyword evidence="2" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="2" id="KW-0648">Protein biosynthesis</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="active site" evidence="2">
        <location>
            <position position="144"/>
        </location>
    </feature>
    <feature type="binding site" evidence="2">
        <location>
            <position position="101"/>
        </location>
        <ligand>
            <name>Fe cation</name>
            <dbReference type="ChEBI" id="CHEBI:24875"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="2">
        <location>
            <position position="143"/>
        </location>
        <ligand>
            <name>Fe cation</name>
            <dbReference type="ChEBI" id="CHEBI:24875"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="2">
        <location>
            <position position="147"/>
        </location>
        <ligand>
            <name>Fe cation</name>
            <dbReference type="ChEBI" id="CHEBI:24875"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00010759"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00163"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ABX37484.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="179" mass="19956" checksum="348C000735E3FB5B" modified="2008-01-15" version="1">MTVRTILKMGDPRLLRVAQPVTEFDTDELHLLLSDLLDTMHAANGAGLAAPQIGVDLQMVVFGSGLPNPRYPDAPVVPRTVLINPVITPMGEDEHLDWEGCLSVPGMRGMVPRWNHIRYTGFDVFGDAIDRTVDGFHARVVQHECDHLWGKLYPMRMRDFSQFGFTDVLFPGISAAEDD</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="62" xmlns="http://uniprot.org/uniprot">
    <accession>A9BMF6</accession>
    <name>A9BMF6_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="6 18">Diacylglycerol kinase</fullName>
            <ecNumber evidence="5 18">2.7.1.107</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="20" type="ordered locus">Daci_4872</name>
    </gene>
    <organism evidence="20 21">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="20 21" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="21">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="21" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="21">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="18">Catalyzes the ATP-dependent phosphorylation of sn-l,2-diacylglycerol (DAG) to phosphatidic acid. Involved in the recycling of diacylglycerol produced as a by-product during membrane-derived oligosaccharide (MDO) biosynthesis.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="18">
            <text>a 1,2-diacyl-sn-glycerol + ATP = a 1,2-diacyl-sn-glycero-3-phosphate + ADP + H(+)</text>
            <dbReference type="Rhea" id="RHEA:10272"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:17815"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:58608"/>
            <dbReference type="ChEBI" id="CHEBI:456216"/>
            <dbReference type="EC" id="2.7.1.107"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </cofactor>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="3 18">Cell inner membrane</location>
            <topology evidence="3 18">Multi-pass membrane protein</topology>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="2">Membrane</location>
            <topology evidence="2">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="4 18">Belongs to the bacterial diacylglycerol kinase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="18">Lacks conserved residue(s) required for the propagation of feature annotation.</text>
    </comment>
    <dbReference type="EC" id="2.7.1.107" evidence="5 18"/>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX37501.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012206671.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_4872"/>
    <dbReference type="EnsemblBacteria" id="ABX37501">
        <property type="protein sequence ID" value="ABX37501"/>
        <property type="gene ID" value="Daci_4872"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_4872"/>
    <dbReference type="eggNOG" id="COG0818">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_112343_3_0_4"/>
    <dbReference type="OMA" id="RVKDMGS"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004143">
        <property type="term" value="F:diacylglycerol kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006654">
        <property type="term" value="P:phosphatidic acid biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016310">
        <property type="term" value="P:phosphorylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd14264">
        <property type="entry name" value="DAGK_IM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.287.3610">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000829">
        <property type="entry name" value="DAGK"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR033718">
        <property type="entry name" value="DAGK_prok"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036945">
        <property type="entry name" value="DAGK_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR34299">
        <property type="entry name" value="PTHR34299"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01219">
        <property type="entry name" value="DAGK_prokar"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="14 18" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="8 18" id="KW-0997">Cell inner membrane</keyword>
    <keyword evidence="7" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="13 18 20" id="KW-0418">Kinase</keyword>
    <keyword evidence="18" id="KW-0443">Lipid metabolism</keyword>
    <keyword evidence="15" id="KW-0460">Magnesium</keyword>
    <keyword evidence="17 18" id="KW-0472">Membrane</keyword>
    <keyword evidence="11" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="12 18" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="18" id="KW-1208">Phospholipid metabolism</keyword>
    <keyword evidence="21" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="9 18" id="KW-0808">Transferase</keyword>
    <keyword evidence="10 18" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="16 18" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="18">
        <location>
            <begin position="70"/>
            <end position="90"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="18">
        <location>
            <begin position="111"/>
            <end position="132"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="19">
        <location>
            <begin position="1"/>
            <end position="20"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001946"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00004429"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00005967"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00012133"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00017575"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00022519"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="12">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="13">
        <source>
            <dbReference type="ARBA" id="ARBA00022777"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="14">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="15">
        <source>
            <dbReference type="ARBA" id="ARBA00022842"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="16">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="17">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="18">
        <source>
            <dbReference type="RuleBase" id="RU363065"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="19">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="20">
        <source>
            <dbReference type="EMBL" id="ABX37501.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="21">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="137" mass="14635" checksum="646D41E49191BD12" modified="2008-01-15" version="1">MPAASPDPTDSAPVNPQKSRTGLTRVWHAAGYSLSGLRAGWNEKAFRQEALAAIVLIPAAFWLGSSWIEVALLAGTVLLVLIVELLNSGIESVVDRIGPEWHVLSKQAKDMGSAAVMLALLLCAGVWLAALYQRFIA</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="80" xmlns="http://uniprot.org/uniprot">
    <accession>A9BMI9</accession>
    <name>A9BMI9_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="5">Thioredoxin</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="8" type="ordered locus">Daci_4905</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="9" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1 5">Belongs to the thioredoxin family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX37534.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012206704.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_4905"/>
    <dbReference type="PRIDE" id="A9BMI9"/>
    <dbReference type="EnsemblBacteria" id="ABX37534">
        <property type="protein sequence ID" value="ABX37534"/>
        <property type="gene ID" value="Daci_4905"/>
    </dbReference>
    <dbReference type="GeneID" id="60689249"/>
    <dbReference type="KEGG" id="dac:Daci_4905"/>
    <dbReference type="eggNOG" id="COG3118">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_090389_10_2_4"/>
    <dbReference type="OMA" id="QVGVAPK"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015035">
        <property type="term" value="F:protein-disulfide reductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005746">
        <property type="entry name" value="Thioredoxin"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036249">
        <property type="entry name" value="Thioredoxin-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017937">
        <property type="entry name" value="Thioredoxin_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013766">
        <property type="entry name" value="Thioredoxin_domain"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00085">
        <property type="entry name" value="Thioredoxin"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF000077">
        <property type="entry name" value="Thioredoxin"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52833">
        <property type="entry name" value="SSF52833"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01068">
        <property type="entry name" value="thioredoxin"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00194">
        <property type="entry name" value="THIOREDOXIN_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51352">
        <property type="entry name" value="THIOREDOXIN_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3 6" id="KW-1015">Disulfide bond</keyword>
    <keyword evidence="4 6" id="KW-0676">Redox-active center</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0732">Signal</keyword>
    <feature type="domain" description="Thioredoxin" evidence="7">
        <location>
            <begin position="1"/>
            <end position="110"/>
        </location>
    </feature>
    <feature type="disulfide bond" description="Redox-active" evidence="6">
        <location>
            <begin position="34"/>
            <end position="37"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00008987"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022729"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023157"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023284"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="PIRNR" id="PIRNR000077"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="PIRSR" id="PIRSR000077-4"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="PROSITE" id="PS51352"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="ABX37534.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="110" mass="12077" checksum="BF8A451634D89524" modified="2008-01-15" version="1">MASELIKHISDASFEADVLQPGTTVLVDYWAEWCGPCKMIAPILDEAAQTYKEKLSIAKMNVDENREIPAKFGIRGIPTLMLFKDGQLAATKVGALNKAQLSAFLEQHLA</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="90" xmlns="http://uniprot.org/uniprot">
    <accession>A9BMJ7</accession>
    <name>A9BMJ7_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Phosphate regulon transcriptional regulatory protein PhoB</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="10" type="ordered locus">Daci_4913</name>
    </gene>
    <organism evidence="10 11">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="10 11" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="11">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="11" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="11">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="5">This protein is a positive regulator for the phosphate regulon. Transcription of this operon is positively regulated by PhoB and PhoR when phosphate is limited.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX37542.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012206712.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_4913"/>
    <dbReference type="PRIDE" id="A9BMJ7"/>
    <dbReference type="EnsemblBacteria" id="ABX37542">
        <property type="protein sequence ID" value="ABX37542"/>
        <property type="gene ID" value="Daci_4913"/>
    </dbReference>
    <dbReference type="GeneID" id="60689257"/>
    <dbReference type="KEGG" id="dac:Daci_4913"/>
    <dbReference type="eggNOG" id="COG0745">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_000445_30_4_4"/>
    <dbReference type="OMA" id="IDRVWGS"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000156">
        <property type="term" value="F:phosphorelay response regulator activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006817">
        <property type="term" value="P:phosphate ion transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006355">
        <property type="term" value="P:regulation of transcription, DNA-templated"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd00383">
        <property type="entry name" value="trans_reg_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011006">
        <property type="entry name" value="CheY-like_superfamily"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001867">
        <property type="entry name" value="OmpR/PhoB-type_DNA-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016032">
        <property type="entry name" value="Sig_transdc_resp-reg_C-effctor"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011879">
        <property type="entry name" value="Sig_transdc_resp-reg_PhoB"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001789">
        <property type="entry name" value="Sig_transdc_resp-reg_receiver"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR039420">
        <property type="entry name" value="WalR-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR48111">
        <property type="entry name" value="PTHR48111"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00072">
        <property type="entry name" value="Response_reg"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00486">
        <property type="entry name" value="Trans_reg_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00448">
        <property type="entry name" value="REC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00862">
        <property type="entry name" value="Trans_reg_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46894">
        <property type="entry name" value="SSF46894"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52172">
        <property type="entry name" value="SSF52172"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR02154">
        <property type="entry name" value="PhoB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51755">
        <property type="entry name" value="OMPR_PHOB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50110">
        <property type="entry name" value="RESPONSE_REGULATORY"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4 7" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="3" id="KW-0592">Phosphate transport</keyword>
    <keyword evidence="6" id="KW-0597">Phosphoprotein</keyword>
    <keyword evidence="11" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0813">Transport</keyword>
    <feature type="domain" description="Response regulatory" evidence="8">
        <location>
            <begin position="6"/>
            <end position="122"/>
        </location>
    </feature>
    <feature type="domain" description="OmpR/PhoB-type" evidence="9">
        <location>
            <begin position="131"/>
            <end position="227"/>
        </location>
    </feature>
    <feature type="DNA-binding region" description="OmpR/PhoB-type" evidence="7">
        <location>
            <begin position="131"/>
            <end position="227"/>
        </location>
    </feature>
    <feature type="modified residue" description="4-aspartylphosphate" evidence="6">
        <location>
            <position position="55"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00013332"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022448"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022592"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00024735"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00169"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU01091"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="PROSITE" id="PS50110"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="9">
        <source>
            <dbReference type="PROSITE" id="PS51755"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="EMBL" id="ABX37542.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="231" mass="25744" checksum="FB4E5B18E7F1CFA2" modified="2008-01-15" version="1">MKKMPMVLIVEDEPAIAELIAVNLRHNGFQPVWAEDGVTAQRELDAVLPDVILLDWMLPGASGLSLARKWRADSRTKAVPILMLTARGDEPDKVAGLDAGADDYITKPFSTQELLARIRAVLRRRAPEQIQDKVNIGELVLDAAAHRVSWQGDMIKVGPTEFKLLHYLMKHPERVHSRAQLLDKVWGDHVFIEERTVDVHVKRLREALGMAGALIETVRGAGYRLSAQALA</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="84" xmlns="http://uniprot.org/uniprot">
    <accession>A9BML9</accession>
    <name>A9BML9_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="4 11">Lipid-A-disaccharide synthase</fullName>
            <ecNumber evidence="3 11">2.4.1.182</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="11" type="primary">lpxB</name>
        <name evidence="12" type="ordered locus">Daci_4935</name>
    </gene>
    <organism evidence="12 13">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="12 13" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="13">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="13" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="13">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="1 11">Condensation of UDP-2,3-diacylglucosamine and 2,3-diacylglucosamine-1-phosphate to form lipid A disaccharide, a precursor of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="10 11">
            <text>a lipid X + a UDP-2-N,3-O-bis[(3R)-3-hydroxyacyl]-alpha-D-glucosamine = a lipid A disaccharide + H(+) + UDP</text>
            <dbReference type="Rhea" id="RHEA:67828"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:58223"/>
            <dbReference type="ChEBI" id="CHEBI:137748"/>
            <dbReference type="ChEBI" id="CHEBI:176338"/>
            <dbReference type="ChEBI" id="CHEBI:176343"/>
            <dbReference type="EC" id="2.4.1.182"/>
        </reaction>
    </comment>
    <comment type="pathway">
        <text evidence="11">Bacterial outer membrane biogenesis; LPS lipid A biosynthesis.</text>
    </comment>
    <comment type="similarity">
        <text evidence="2 11">Belongs to the LpxB family.</text>
    </comment>
    <dbReference type="EC" id="2.4.1.182" evidence="3 11"/>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX37564.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012206734.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_4935"/>
    <dbReference type="CAZy" id="GT19">
        <property type="family name" value="Glycosyltransferase Family 19"/>
    </dbReference>
    <dbReference type="PRIDE" id="A9BML9"/>
    <dbReference type="EnsemblBacteria" id="ABX37564">
        <property type="protein sequence ID" value="ABX37564"/>
        <property type="gene ID" value="Daci_4935"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_4935"/>
    <dbReference type="eggNOG" id="COG0763">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_036577_3_0_4"/>
    <dbReference type="OMA" id="PTVWAWR"/>
    <dbReference type="UniPathway" id="UPA00973"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008915">
        <property type="term" value="F:lipid-A-disaccharide synthase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009245">
        <property type="term" value="P:lipid A biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00392">
        <property type="entry name" value="LpxB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003835">
        <property type="entry name" value="Glyco_trans_19"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30372">
        <property type="entry name" value="PTHR30372"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02684">
        <property type="entry name" value="LpxB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00215">
        <property type="entry name" value="lpxB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="7 11 12" id="KW-0328">Glycosyltransferase</keyword>
    <keyword evidence="6 11" id="KW-0441">Lipid A biosynthesis</keyword>
    <keyword evidence="5 11" id="KW-0444">Lipid biosynthesis</keyword>
    <keyword evidence="9 11" id="KW-0443">Lipid metabolism</keyword>
    <keyword evidence="13" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="8 11 12" id="KW-0808">Transferase</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00002056"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00007868"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00012687"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00020902"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022516"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022556"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022676"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00023098"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00029342"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00392"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="EMBL" id="ABX37564.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="13">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="396" mass="43563" checksum="49F95227CE2FDA35" modified="2008-01-15" version="1">MTENAAPLARLSPSIAMVAGETSGDLLASLLLDGLQARWPEASAFGIGGPQMQQRGFEAWWSCERLAVHGYSWEVFRRLAEILNIRRQLRQRLLKQPPAVFVGIDAPDFNLGLEADLRAAGIKTVHFVCPSIWAWRADRVEKIRRAADHVLCIFPFEPELLARHGIDATYVGHPLASVIPLQPDRAAARRRLGLPEDGLVLAVLPGSRRSEIRYLAARFFQAAALVRKALPAIKIVVPAVPLQLDELRRIAQESGMASSLHIVRGQSHDALAACDVTLIASGTATLEAALYKRPMVIGYNMHPWSWRLMRGKQLQPWVGLPNILCGDFVVPELIQDAATPQALSAAVLQWLQACEHSPSTVEALVQRFTALHHELRRDTAELAAHAIEKIIAPTAA</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-01-19" version="58" xmlns="http://uniprot.org/uniprot">
    <accession>A9BMT0</accession>
    <name>A9BMT0_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Fimbrial protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_4996</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX37625.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_4996"/>
    <dbReference type="EnsemblBacteria" id="ABX37625">
        <property type="protein sequence ID" value="ABX37625"/>
        <property type="gene ID" value="Daci_4996"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_4996"/>
    <dbReference type="eggNOG" id="COG3539">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_1213205_0_0_4"/>
    <dbReference type="OMA" id="APRSFLI"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009289">
        <property type="term" value="C:pilus"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0007155">
        <property type="term" value="P:cell adhesion"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.40.1090">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000259">
        <property type="entry name" value="Adhesion_dom_fimbrial"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036937">
        <property type="entry name" value="Adhesion_dom_fimbrial_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008966">
        <property type="entry name" value="Adhesion_dom_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00419">
        <property type="entry name" value="Fimbrial"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF49401">
        <property type="entry name" value="SSF49401"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Fimbrial" evidence="1">
        <location>
            <begin position="71"/>
            <end position="228"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF00419"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX37625.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="228" mass="23877" checksum="0A1CC00F51A7F28D" modified="2008-01-15" version="1">MRVSTVNGAAPVSTSEHSNHPGSFAYQYAIVTVELIKTADGDITAGGVLDSDFLYERATDAFGQLLAQYSFSSPVVLRPKVPTCTPQAPEPVRMAQTVTQKLTSIGSTGAPRSFLISLLCKGGIPGSLTNAYVTLTDVANPGNIGNALTLSKTSVAKGVGVQIRKDDQILGFGPDSNAAGNRNQWFAGSVAYGQERLDIPLTARYVKTGENVTIGSANAAATFTISYQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2021-06-02" version="52" xmlns="http://uniprot.org/uniprot">
    <accession>A9BMT9</accession>
    <name>A9BMT9_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Fatty acid hydroxylase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Daci_5005</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="4" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX37634.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012206804.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_5005"/>
    <dbReference type="EnsemblBacteria" id="ABX37634">
        <property type="protein sequence ID" value="ABX37634"/>
        <property type="gene ID" value="Daci_5005"/>
    </dbReference>
    <dbReference type="GeneID" id="60689353"/>
    <dbReference type="KEGG" id="dac:Daci_5005"/>
    <dbReference type="eggNOG" id="COG3000">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_857763_0_0_4"/>
    <dbReference type="OMA" id="WSDNRNH"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005506">
        <property type="term" value="F:iron ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016491">
        <property type="term" value="F:oxidoreductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008610">
        <property type="term" value="P:lipid biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006694">
        <property type="entry name" value="Fatty_acid_hydroxylase"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04116">
        <property type="entry name" value="FA_hydroxylase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="41"/>
            <end position="63"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="75"/>
            <end position="98"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="129"/>
            <end position="148"/>
        </location>
    </feature>
    <feature type="domain" description="Fatty acid hydroxylase" evidence="2">
        <location>
            <begin position="135"/>
            <end position="280"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF04116"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ABX37634.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="326" mass="37862" checksum="2B2F1976ED5A139E" modified="2008-01-15" version="1">MDWWIQWFGNAQQRLFEGVVQPLLFGLGQASLLEDAYGATGWLLVGLLQIFIMVAVIAPLQYWRPVEPVTDRRAIHVDIIYTVVHRLGLFRLALFFTLDPLWDELMGRLHVWGLPSFHLDGVWPGVTDLAWVSLIIYLLAFDFLDYWIHRGQHSIGWWWKLHALHHSQRQMTVWSDNRNHLLDDVIRDTIIVLVAQLIGVAPGQFVAIVAFTQLSESFQHANLRVWFGTIGERLWISPRFHRRHHAIGIGHEPMAPVRNKKAHGNNFGVLLPWWDMLFGTANFELRFDPTGVRDQVQPNAQGQLRDYGQGFWAQQWRGFLRLMGRA</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2021-09-29" version="61" xmlns="http://uniprot.org/uniprot">
    <accession>A9BNB5</accession>
    <name>A9BNB5_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="3 10">Protein-export membrane protein SecG</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="12" type="ordered locus">Daci_5181</name>
    </gene>
    <organism evidence="12 13">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="12 13" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="13">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="13" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="13">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="10">Involved in protein export. Participates in an early event of protein translocation.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="10">Cell membrane</location>
            <topology evidence="10">Multi-pass membrane protein</topology>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2 10">Belongs to the SecG family.</text>
    </comment>
    <comment type="caution">
        <text evidence="10">Lacks conserved residue(s) required for the propagation of feature annotation.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX37810.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012206980.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_5181"/>
    <dbReference type="EnsemblBacteria" id="ABX37810">
        <property type="protein sequence ID" value="ABX37810"/>
        <property type="gene ID" value="Daci_5181"/>
    </dbReference>
    <dbReference type="GeneID" id="60689532"/>
    <dbReference type="KEGG" id="dac:Daci_5181"/>
    <dbReference type="eggNOG" id="COG1314">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_094156_2_0_4"/>
    <dbReference type="OMA" id="VIHLMIV"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015450">
        <property type="term" value="F:protein-transporting ATPase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009306">
        <property type="term" value="P:protein secretion"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004692">
        <property type="entry name" value="SecG"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR34182">
        <property type="entry name" value="PTHR34182"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03840">
        <property type="entry name" value="SecG"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR01651">
        <property type="entry name" value="SECGEXPORT"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00810">
        <property type="entry name" value="secG"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="10" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="9 10" id="KW-0472">Membrane</keyword>
    <keyword evidence="6 10" id="KW-0653">Protein transport</keyword>
    <keyword evidence="13" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="8 10" id="KW-0811">Translocation</keyword>
    <keyword evidence="5 10" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="7 10" id="KW-1133">Transmembrane helix</keyword>
    <keyword evidence="4 10" id="KW-0813">Transport</keyword>
    <feature type="transmembrane region" description="Helical" evidence="10">
        <location>
            <begin position="54"/>
            <end position="76"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="11">
        <location>
            <begin position="98"/>
            <end position="130"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00008445"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00017876"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022448"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022927"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00023010"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="RuleBase" id="RU365087"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="EMBL" id="ABX37810.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="13">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="130" mass="12289" checksum="490D80EFF91C7386" modified="2008-01-15" version="1">MNAFASVILAVQMLSALGMIGLILIQHGKGADMGASFGSGSSGSLFGASGSANFLSRSTAGLATVFFVATLALAYLSNARPVSSGSVLEGAAPITAPAPAASGAAGEVPAPAAGQAPAAGAEGAAQIPTK</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="87" xmlns="http://uniprot.org/uniprot">
    <accession>A9BNK2</accession>
    <name>A9BNK2_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="4 10">3-oxoacyl-[acyl-carrier-protein] synthase 2</fullName>
            <ecNumber evidence="3 10">2.3.1.179</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="14" type="ordered locus">Daci_5268</name>
    </gene>
    <organism evidence="14 15">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="14 15" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="15">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="15" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="15">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="10">Involved in the type II fatty acid elongation cycle. Catalyzes the elongation of a wide range of acyl-ACP by the addition of two carbons from malonyl-ACP to an acyl acceptor. Can efficiently catalyze the conversion of palmitoleoyl-ACP (cis-hexadec-9-enoyl-ACP) to cis-vaccenoyl-ACP (cis-octadec-11-enoyl-ACP), an essential step in the thermal regulation of fatty acid composition.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="10">
            <text>(9Z)-hexadecenoyl-[ACP] + H(+) + malonyl-[ACP] = 3-oxo-(11Z)-octadecenoyl-[ACP] + CO2 + holo-[ACP]</text>
            <dbReference type="Rhea" id="RHEA:55040"/>
            <dbReference type="Rhea" id="RHEA-COMP:9623"/>
            <dbReference type="Rhea" id="RHEA-COMP:9685"/>
            <dbReference type="Rhea" id="RHEA-COMP:10800"/>
            <dbReference type="Rhea" id="RHEA-COMP:14074"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:16526"/>
            <dbReference type="ChEBI" id="CHEBI:64479"/>
            <dbReference type="ChEBI" id="CHEBI:78449"/>
            <dbReference type="ChEBI" id="CHEBI:83989"/>
            <dbReference type="ChEBI" id="CHEBI:138538"/>
            <dbReference type="EC" id="2.3.1.179"/>
        </reaction>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="10">
            <text>a fatty acyl-[ACP] + H(+) + malonyl-[ACP] = a 3-oxoacyl-[ACP] + CO2 + holo-[ACP]</text>
            <dbReference type="Rhea" id="RHEA:22836"/>
            <dbReference type="Rhea" id="RHEA-COMP:9623"/>
            <dbReference type="Rhea" id="RHEA-COMP:9685"/>
            <dbReference type="Rhea" id="RHEA-COMP:9916"/>
            <dbReference type="Rhea" id="RHEA-COMP:14125"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:16526"/>
            <dbReference type="ChEBI" id="CHEBI:64479"/>
            <dbReference type="ChEBI" id="CHEBI:78449"/>
            <dbReference type="ChEBI" id="CHEBI:78776"/>
            <dbReference type="ChEBI" id="CHEBI:138651"/>
        </reaction>
    </comment>
    <comment type="pathway">
        <text evidence="1 10">Lipid metabolism; fatty acid biosynthesis.</text>
    </comment>
    <comment type="similarity">
        <text evidence="2 10 12">Belongs to the thiolase-like superfamily. Beta-ketoacyl-ACP synthases family.</text>
    </comment>
    <dbReference type="EC" id="2.3.1.179" evidence="3 10"/>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX37897.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012207067.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_5268"/>
    <dbReference type="PRIDE" id="A9BNK2"/>
    <dbReference type="EnsemblBacteria" id="ABX37897">
        <property type="protein sequence ID" value="ABX37897"/>
        <property type="gene ID" value="Daci_5268"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_5268"/>
    <dbReference type="eggNOG" id="COG0304">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_000022_69_2_4"/>
    <dbReference type="OMA" id="QIGHCLG"/>
    <dbReference type="UniPathway" id="UPA00094"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004315">
        <property type="term" value="F:3-oxoacyl-[acyl-carrier-protein] synthase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006633">
        <property type="term" value="P:fatty acid biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniPathway"/>
    </dbReference>
    <dbReference type="CDD" id="cd00834">
        <property type="entry name" value="KAS_I_II"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.47.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017568">
        <property type="entry name" value="3-oxoacyl-ACP_synth-2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000794">
        <property type="entry name" value="Beta-ketoacyl_synthase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018201">
        <property type="entry name" value="Ketoacyl_synth_AS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014031">
        <property type="entry name" value="Ketoacyl_synth_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014030">
        <property type="entry name" value="Ketoacyl_synth_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020841">
        <property type="entry name" value="PKS_Beta-ketoAc_synthase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016039">
        <property type="entry name" value="Thiolase-like"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11712">
        <property type="entry name" value="PTHR11712"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00109">
        <property type="entry name" value="ketoacyl-synt"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02801">
        <property type="entry name" value="Ketoacyl-synt_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF000447">
        <property type="entry name" value="KAS_II"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00825">
        <property type="entry name" value="PKS_KS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53901">
        <property type="entry name" value="SSF53901"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR03150">
        <property type="entry name" value="fabF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00606">
        <property type="entry name" value="B_KETOACYL_SYNTHASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="9 10" id="KW-0012">Acyltransferase</keyword>
    <keyword evidence="8 10" id="KW-0275">Fatty acid biosynthesis</keyword>
    <keyword evidence="6" id="KW-0276">Fatty acid metabolism</keyword>
    <keyword evidence="5 10" id="KW-0444">Lipid biosynthesis</keyword>
    <keyword evidence="7" id="KW-0443">Lipid metabolism</keyword>
    <keyword evidence="15" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="10 12" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="PKS_KS" evidence="13">
        <location>
            <begin position="6"/>
            <end position="414"/>
        </location>
    </feature>
    <feature type="active site" evidence="11">
        <location>
            <position position="168"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00005194"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00008467"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00012356"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00014657"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022516"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022832"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023098"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00023160"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00023315"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="PIRNR" id="PIRNR000447"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="PIRSR" id="PIRSR000447-1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="12">
        <source>
            <dbReference type="RuleBase" id="RU003694"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="13">
        <source>
            <dbReference type="SMART" id="SM00825"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="14">
        <source>
            <dbReference type="EMBL" id="ABX37897.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="15">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="414" mass="43098" checksum="B3794AAC97BCD899" modified="2008-01-15" version="1">MSRRRVVVTGLGCISPVGNTVGDAWANLLAGQSGIDLITKFDASNFACKIAGEVKGFDVESYMSAKDARSMDTFIHYGIAAAAQAVQDSGLPTGEALSDDLATRIGCVIGSGIGGLPLIENTHAELAARGPRRITPFFVPASIINMVAGHVSMRFGFKGPNLAVVTACTTGLHCIGEAGRMIEYGDADVVVAGGTEATVSPLGVGGFAAMRALSTRNDDPKAASRPWDKDRDGFVLGEGAGVLVLEEYEHAKARGAKIYAELCGYGMSADAGHMTAPNMDGPRRAMLAALRNAGINADQIDYLNAHGTSTPLGDLNETNAIKAALGDHAKKIVVSSTKSMTGHLLGGAGGIESVFTVLALHEQKIPPTINLDNQDPECDLDYCANTARDATIEVAVKNNFGFGGTNGTLVFKRV</sequence>
</entry>
<entry dataset="Swiss-Prot" created="2009-04-14" modified="2022-08-03" version="86" xmlns="http://uniprot.org/uniprot">
    <accession>A9BNK3</accession>
    <name>ACP_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Acyl carrier protein</fullName>
            <shortName evidence="1">ACP</shortName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="1" type="primary">acpP</name>
        <name type="ordered locus">Daci_5269</name>
    </gene>
    <organism>
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference key="1">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain>DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="1">Carrier of the growing fatty acid chain in fatty acid biosynthesis.</text>
    </comment>
    <comment type="pathway">
        <text evidence="1">Lipid metabolism; fatty acid biosynthesis.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="PTM">
        <text evidence="1">4'-phosphopantetheine is transferred from CoA to a specific serine of apo-ACP by AcpS. This modification is essential for activity because fatty acids are bound in thioester linkage to the sulfhydryl of the prosthetic group.</text>
    </comment>
    <comment type="similarity">
        <text evidence="1">Belongs to the acyl carrier protein (ACP) family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX37898.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_003058049.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A9BNK3"/>
    <dbReference type="SMR" id="A9BNK3"/>
    <dbReference type="STRING" id="398578.Daci_5269"/>
    <dbReference type="PRIDE" id="A9BNK3"/>
    <dbReference type="EnsemblBacteria" id="ABX37898">
        <property type="protein sequence ID" value="ABX37898"/>
        <property type="gene ID" value="Daci_5269"/>
    </dbReference>
    <dbReference type="GeneID" id="60801106"/>
    <dbReference type="GeneID" id="63995562"/>
    <dbReference type="KEGG" id="dac:Daci_5269"/>
    <dbReference type="eggNOG" id="COG0236">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_108696_5_1_4"/>
    <dbReference type="OMA" id="CEIPDEQ"/>
    <dbReference type="UniPathway" id="UPA00094"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000036">
        <property type="term" value="F:acyl carrier activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0031177">
        <property type="term" value="F:phosphopantetheine binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.1200.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01217">
        <property type="entry name" value="Acyl_carrier"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036736">
        <property type="entry name" value="ACP-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003231">
        <property type="entry name" value="Acyl_carrier"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020806">
        <property type="entry name" value="PKS_PP-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009081">
        <property type="entry name" value="PP-bd_ACP"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006162">
        <property type="entry name" value="Ppantetheine_attach_site"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR20863">
        <property type="entry name" value="PTHR20863"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00550">
        <property type="entry name" value="PP-binding"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00823">
        <property type="entry name" value="PKS_PP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47336">
        <property type="entry name" value="SSF47336"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00517">
        <property type="entry name" value="acyl_carrier"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50075">
        <property type="entry name" value="CARRIER"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00012">
        <property type="entry name" value="PHOSPHOPANTETHEINE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword id="KW-0963">Cytoplasm</keyword>
    <keyword id="KW-0275">Fatty acid biosynthesis</keyword>
    <keyword id="KW-0276">Fatty acid metabolism</keyword>
    <keyword id="KW-0444">Lipid biosynthesis</keyword>
    <keyword id="KW-0443">Lipid metabolism</keyword>
    <keyword id="KW-0596">Phosphopantetheine</keyword>
    <keyword id="KW-0597">Phosphoprotein</keyword>
    <keyword id="KW-1185">Reference proteome</keyword>
    <feature type="chain" id="PRO_1000139017" description="Acyl carrier protein">
        <location>
            <begin position="1"/>
            <end position="79"/>
        </location>
    </feature>
    <feature type="domain" description="Carrier" evidence="2">
        <location>
            <begin position="2"/>
            <end position="77"/>
        </location>
    </feature>
    <feature type="modified residue" description="O-(pantetheine 4'-phosphoryl)serine" evidence="2">
        <location>
            <position position="37"/>
        </location>
    </feature>
    <evidence type="ECO:0000255" key="1">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01217"/>
        </source>
    </evidence>
    <evidence type="ECO:0000255" key="2">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00258"/>
        </source>
    </evidence>
    <sequence length="79" mass="8666" checksum="0C697B3FBD07CB2D" modified="2008-01-15" version="1">MSDIEARVKKIIAEQLGVEESQVTNEKAFVADLGADSLDTVELVMALEDEFGIEIPDEDAEKITTVQNAIDYANTHQKA</sequence>
</entry>
<entry dataset="Swiss-Prot" created="2009-09-01" modified="2022-08-03" version="53" xmlns="http://uniprot.org/uniprot">
    <accession>A9BNV7</accession>
    <name>Y5373_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">UPF0502 protein Daci_5373</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name type="ordered locus">Daci_5373</name>
    </gene>
    <organism>
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference key="1">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain>DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the UPF0502 family.</text>
    </comment>
    <comment type="sequence caution" evidence="2">
        <conflict type="erroneous initiation">
            <sequence resource="EMBL-CDS" id="ABX38002" version="1"/>
        </conflict>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX38002.1"/>
        <property type="status" value="ALT_INIT"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_043783684.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A9BNV7"/>
    <dbReference type="SMR" id="A9BNV7"/>
    <dbReference type="STRING" id="398578.Daci_5373"/>
    <dbReference type="PRIDE" id="A9BNV7"/>
    <dbReference type="EnsemblBacteria" id="ABX38002">
        <property type="protein sequence ID" value="ABX38002"/>
        <property type="gene ID" value="Daci_5373"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_5373"/>
    <dbReference type="eggNOG" id="COG3132">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_057831_0_0_4"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01584">
        <property type="entry name" value="UPF0502"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007432">
        <property type="entry name" value="DUF480"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036390">
        <property type="entry name" value="WH_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR38768">
        <property type="entry name" value="PTHR38768"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04337">
        <property type="entry name" value="DUF480"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46785">
        <property type="entry name" value="SSF46785"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword id="KW-1185">Reference proteome</keyword>
    <feature type="chain" id="PRO_0000382556" description="UPF0502 protein Daci_5373">
        <location>
            <begin position="1"/>
            <end position="226"/>
        </location>
    </feature>
    <evidence type="ECO:0000255" key="1">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01584"/>
        </source>
    </evidence>
    <evidence type="ECO:0000305" key="2"/>
    <sequence length="226" mass="24690" checksum="CDDF58402733D6D3" modified="2009-09-01" version="2">MPFDPRTTPLTAVEARVLATLMEKARTVPDSYPLTLNALVTGCNQKSSRDPVMEVSEGEAQEALDSLRLRTMSVQISSARATRWEHNFPRGVGVPDQSAVLLSLLMLRGPQTAGELRINSERWHRFADISSVEAFLEELRERSEEKGGPLVVLLPRAPGAREQRWAHLLCGPVDVNAMAQPPAAAGARGDALAQRVVDLEAQVQQLQARLAHVYAQLGLEEPGQSS</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="70" xmlns="http://uniprot.org/uniprot">
    <accession>A9BP05</accession>
    <name>A9BP05_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="3 5">DNA repair protein RecN</fullName>
        </recommendedName>
        <alternativeName>
            <fullName evidence="4 5">Recombination protein N</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="9" type="ordered locus">Daci_5421</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="9 10" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="10" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="1 5">May be involved in recombinational repair of damaged DNA.</text>
    </comment>
    <comment type="similarity">
        <text evidence="2 5">Belongs to the RecN family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX38050.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012207219.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_5421"/>
    <dbReference type="PRIDE" id="A9BP05"/>
    <dbReference type="EnsemblBacteria" id="ABX38050">
        <property type="protein sequence ID" value="ABX38050"/>
        <property type="gene ID" value="Daci_5421"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_5421"/>
    <dbReference type="eggNOG" id="COG0497">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_018297_3_1_4"/>
    <dbReference type="OMA" id="QVICVTH"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006310">
        <property type="term" value="P:DNA recombination"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006281">
        <property type="term" value="P:DNA repair"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004604">
        <property type="entry name" value="DNA_recomb/repair_RecN"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003395">
        <property type="entry name" value="RecF/RecN/SMC_N"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11059">
        <property type="entry name" value="PTHR11059"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02463">
        <property type="entry name" value="SMC_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF003128">
        <property type="entry name" value="RecN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
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        <property type="entry name" value="recN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="6" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="5" id="KW-0227">DNA damage</keyword>
    <keyword evidence="5" id="KW-0234">DNA repair</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
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        <location>
            <begin position="3"/>
            <end position="505"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="7">
        <location>
            <begin position="547"/>
            <end position="591"/>
        </location>
    </feature>
    <feature type="coiled-coil region" evidence="6">
        <location>
            <begin position="167"/>
            <end position="235"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="7">
        <location>
            <begin position="563"/>
            <end position="579"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00003618"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00009441"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00021315"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00033408"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="PIRNR" id="PIRNR003128"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="Pfam" id="PF02463"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="ABX38050.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="591" mass="64184" checksum="9BE2BDE02FDCD827" modified="2008-01-15" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="60" xmlns="http://uniprot.org/uniprot">
    <accession>A9BP73</accession>
    <name>A9BP73_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="9">Type II secretion system protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="9" type="ordered locus">Daci_5489</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="9 10" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="10" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the GSP F family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX38118.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012207287.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_5489"/>
    <dbReference type="PRIDE" id="A9BP73"/>
    <dbReference type="EnsemblBacteria" id="ABX38118">
        <property type="protein sequence ID" value="ABX38118"/>
        <property type="gene ID" value="Daci_5489"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_5489"/>
    <dbReference type="eggNOG" id="COG1459">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_035032_2_1_4"/>
    <dbReference type="OMA" id="TRQMATM"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.81.30">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003004">
        <property type="entry name" value="GspF/PilC"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018076">
        <property type="entry name" value="T2SS_GspF_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR042094">
        <property type="entry name" value="T2SS_GspF_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30012">
        <property type="entry name" value="PTHR30012"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00482">
        <property type="entry name" value="T2SSF"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00812">
        <property type="entry name" value="BCTERIALGSPF"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="6 7" id="KW-0472">Membrane</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4 7" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="5 7" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="171"/>
            <end position="193"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="213"/>
            <end position="239"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="377"/>
            <end position="398"/>
        </location>
    </feature>
    <feature type="domain" description="T2SSF" evidence="8">
        <location>
            <begin position="71"/>
            <end position="194"/>
        </location>
    </feature>
    <feature type="domain" description="T2SSF" evidence="8">
        <location>
            <begin position="275"/>
            <end position="397"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00005745"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="Pfam" id="PF00482"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="ABX38118.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="405" mass="44386" checksum="BEF766C00B56F709" modified="2008-01-15" version="1">MATAASKGIKEFVFEWEGKDRNGKIVRGETRAGGINQVQAMLRRQGVLPSKIKKRRTRGGKKIKPKDIALFTRQMATMMKAGVPLLQAFDIVGRGNTNPSVTRLLADIRSDVETGTSLNAAYRKHPLYFDSLYCNLVEAGEAAGILEALLDRLATYMEKTEAIKSKIKSALMYPISVVVVAFIVVTIIMLFVIPAFKDVFSSFGADLPAPTLFVMGVSDIFVQWWWVIFGVIGGGFYFFMQAWKRNERMQQFMDRAMLKMPVFGALIEKSCVARWTRTLSTMFAAGVPLVEALDSVGGASGNAIYANATEKIQQEVSTGTSLTVAMTNANVFPSMVLQMCAIGEESGSIDHMLGKAADFYEEEVDDMVAGLSSLMEPIIIVFLGTLIGGIVVSMYLPIFKLGQVV</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="65" xmlns="http://uniprot.org/uniprot">
    <accession>A9BPB2</accession>
    <name>A9BPB2_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Extracellular ligand-binding receptor</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Daci_0029</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="4" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX32676.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012201969.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_0029"/>
    <dbReference type="PRIDE" id="A9BPB2"/>
    <dbReference type="EnsemblBacteria" id="ABX32676">
        <property type="protein sequence ID" value="ABX32676"/>
        <property type="gene ID" value="Daci_0029"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_0029"/>
    <dbReference type="eggNOG" id="COG0683">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_027128_7_3_4"/>
    <dbReference type="OMA" id="TIFHGYI"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR028081">
        <property type="entry name" value="Leu-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR028082">
        <property type="entry name" value="Peripla_BP_I"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006311">
        <property type="entry name" value="TAT_signal"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13458">
        <property type="entry name" value="Peripla_BP_6"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53822">
        <property type="entry name" value="SSF53822"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51318">
        <property type="entry name" value="TAT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-0675">Receptor</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="1">
        <location>
            <begin position="1"/>
            <end position="29"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5002735865" evidence="1">
        <location>
            <begin position="30"/>
            <end position="393"/>
        </location>
    </feature>
    <feature type="domain" description="Peripla_BP_6" evidence="2">
        <location>
            <begin position="36"/>
            <end position="366"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF13458"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ABX32676.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="393" mass="42334" checksum="4A4E551ED1EF71A8" modified="2008-01-15" version="1">MQQHPTSSRRRSLLLAAGASLAAPLAARAQAGGEDIVIGGSIPMTGVFAFAGVGINAGMGDYVKMVNEAGGIKGRKIRYVPEDTGYKVDVSVAAFKKITSQNKVNLYYGDSTGFSKTINPELDRNGAILMAGASFATELNNPAKYPNQFLVGPDYTEMFGILLKHIAKEKPGAKVAFVYSDSEFGRDPIEASEAAAKKLGLNVVAKLMTPPGSVDVSTEVIKLRRAAPDYTIFHGYILAPIPEFIQQGKQMGMTSQWMGTFWTMDSSTVMKMGEAGDGFMGVMPYRYYYDTSAKAPMLDKIRALRPEYQSTAYIQGFLAAMLFVESARRCLDAGKPLTGPNLKAALNSIKDFDTGGLIGVPITIKGNSIPVGRVYKADMKAQKMLPASDWIAL</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="64" xmlns="http://uniprot.org/uniprot">
    <accession>A9BPW7</accession>
    <name>A9BPW7_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="5">TRAG family protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ordered locus">Daci_0440</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="6" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the VirD4/TraG family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX33086.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012202376.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_0440"/>
    <dbReference type="PRIDE" id="A9BPW7"/>
    <dbReference type="EnsemblBacteria" id="ABX33086">
        <property type="protein sequence ID" value="ABX33086"/>
        <property type="gene ID" value="Daci_0440"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_0440"/>
    <dbReference type="eggNOG" id="COG3505">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_012039_0_1_4"/>
    <dbReference type="OMA" id="FRWTLDP"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003688">
        <property type="entry name" value="TraG/VirD4"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02534">
        <property type="entry name" value="T4SS-DNA_transf"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-0472">Membrane</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="4" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="4">
        <location>
            <begin position="6"/>
            <end position="25"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="4">
        <location>
            <begin position="37"/>
            <end position="55"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="4">
        <location>
            <begin position="75"/>
            <end position="96"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="3">
        <location>
            <begin position="602"/>
            <end position="621"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="3">
        <location>
            <begin position="638"/>
            <end position="673"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00008806"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="ABX33086.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="673" mass="73703" checksum="A3F1CA93CDF4A6C3" modified="2008-01-15" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="94" xmlns="http://uniprot.org/uniprot">
    <accession>A9BPX8</accession>
    <name>A9BPX8_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="6">Two component heavy metal response transcriptional regulator, winged helix family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ordered locus">Daci_0451</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="7" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX33097.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_0451"/>
    <dbReference type="PRIDE" id="A9BPX8"/>
    <dbReference type="EnsemblBacteria" id="ABX33097">
        <property type="protein sequence ID" value="ABX33097"/>
        <property type="gene ID" value="Daci_0451"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_0451"/>
    <dbReference type="eggNOG" id="COG0745">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_000445_30_1_4"/>
    <dbReference type="OMA" id="WGGDTRV"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000160">
        <property type="term" value="P:phosphorelay signal transduction system"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006355">
        <property type="term" value="P:regulation of transcription, DNA-templated"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd00383">
        <property type="entry name" value="trans_reg_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011006">
        <property type="entry name" value="CheY-like_superfamily"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001867">
        <property type="entry name" value="OmpR/PhoB-type_DNA-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006291">
        <property type="entry name" value="PcoR"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016032">
        <property type="entry name" value="Sig_transdc_resp-reg_C-effctor"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001789">
        <property type="entry name" value="Sig_transdc_resp-reg_receiver"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR039420">
        <property type="entry name" value="WalR-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR48111">
        <property type="entry name" value="PTHR48111"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00072">
        <property type="entry name" value="Response_reg"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00486">
        <property type="entry name" value="Trans_reg_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00448">
        <property type="entry name" value="REC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00862">
        <property type="entry name" value="Trans_reg_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46894">
        <property type="entry name" value="SSF46894"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52172">
        <property type="entry name" value="SSF52172"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01387">
        <property type="entry name" value="cztR_silR_copR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51755">
        <property type="entry name" value="OMPR_PHOB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50110">
        <property type="entry name" value="RESPONSE_REGULATORY"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1 3" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="2" id="KW-0597">Phosphoprotein</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Response regulatory" evidence="4">
        <location>
            <begin position="2"/>
            <end position="116"/>
        </location>
    </feature>
    <feature type="domain" description="OmpR/PhoB-type" evidence="5">
        <location>
            <begin position="125"/>
            <end position="223"/>
        </location>
    </feature>
    <feature type="DNA-binding region" description="OmpR/PhoB-type" evidence="3">
        <location>
            <begin position="125"/>
            <end position="223"/>
        </location>
    </feature>
    <feature type="modified residue" description="4-aspartylphosphate" evidence="2">
        <location>
            <position position="51"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00169"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU01091"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="PROSITE" id="PS50110"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="PROSITE" id="PS51755"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="ABX33097.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="230" mass="25731" checksum="95604B5B51E9E6F6" modified="2008-01-15" version="1">MKLLVVEDENKTADYVRQGLMEAGFVVDLARNGLDGHHLAMSETYDLVVLDVMLPDVDGWRIVRSLRDAGKQVPVLFLTARGSVDDRVKGLELGADDYLVKPFAFSELLARVRTLLRRGSAPSQPDRIQVADLVLDLPRRRATRAGQRINLTSKEFALLELLARRQGEVLPRSLIASQVWDMNFDSDSNVIDVAIRRLRAKIDDAFNPKLIHTVRGMGYTLDAPDDDLAP</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="51" xmlns="http://uniprot.org/uniprot">
    <accession>A9BQ93</accession>
    <name>A9BQ93_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Integral membrane protein TerC</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_0857</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX33503.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012202789.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_0857"/>
    <dbReference type="PRIDE" id="A9BQ93"/>
    <dbReference type="EnsemblBacteria" id="ABX33503">
        <property type="protein sequence ID" value="ABX33503"/>
        <property type="gene ID" value="Daci_0857"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_0857"/>
    <dbReference type="eggNOG" id="COG0861">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_070543_0_0_4"/>
    <dbReference type="OMA" id="ILAMRFV"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005496">
        <property type="entry name" value="Integral_membrane_TerC"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR022301">
        <property type="entry name" value="Integral_membrane_YjbE"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03741">
        <property type="entry name" value="TerC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR03717">
        <property type="entry name" value="R_switched_YjbE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="12"/>
            <end position="37"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="49"/>
            <end position="69"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="140"/>
            <end position="158"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="170"/>
            <end position="195"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="215"/>
            <end position="233"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX33503.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="246" mass="26295" checksum="518DB4ABBC59BD60" modified="2008-01-15" version="1">MDLDFLTHAPFWVALGQIIIIDILLGGDNAVVIALACRKLPPEQRKKGIIWGTAGAIILRVILIAFAMTLLALPFLKFVGALLLVWIGIKLIAPDEDGHDNIQGSDKLLAAIKTIIVADLVMSVDNVIAIAGAAQSSGEHQMLLVVLGLLISIPIIVWGSQLVIKLMERFPIIIVAGGMLLGWIAGGMLVTDPVFANTEKWDWMVKLPQTDMLKYGASVFGALLVLALGKYIASRRPAPKAGAHGA</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="46" xmlns="http://uniprot.org/uniprot">
    <accession>A9BQD4</accession>
    <name>A9BQD4_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">N-acetylmuramoyl-L-alanine amidase domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_0898</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX33544.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="PRIDE" id="A9BQD4"/>
    <dbReference type="EnsemblBacteria" id="ABX33544">
        <property type="protein sequence ID" value="ABX33544"/>
        <property type="gene ID" value="Daci_0898"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_0898"/>
    <dbReference type="eggNOG" id="COG3023">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_2329108_0_0_4"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008745">
        <property type="term" value="F:N-acetylmuramoyl-L-alanine amidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009253">
        <property type="term" value="P:peptidoglycan catabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.80.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036505">
        <property type="entry name" value="Amidase/PGRP_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002502">
        <property type="entry name" value="Amidase_domain"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01510">
        <property type="entry name" value="Amidase_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55846">
        <property type="entry name" value="SSF55846"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="N-acetylmuramoyl-L-alanine amidase" evidence="1">
        <location>
            <begin position="29"/>
            <end position="71"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF01510"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX33544.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="98" mass="10769" checksum="C7448F3E9176F874" modified="2008-01-15" version="1">MLIIDRNGIAIHSLIKPAIAPTIERGEMKEIHGIIVHQTGGSTAQSSIDSYKNPSANGAHFLIEKDGTIYQNRFPLQTNMAHWQNKSALFTGKAMHTS</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="84" xmlns="http://uniprot.org/uniprot">
    <accession>A9BQF2</accession>
    <name>A9BQF2_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Transcriptional regulator, LysR family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Daci_0916</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="4" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the LysR transcriptional regulatory family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX33562.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012202848.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_0916"/>
    <dbReference type="PRIDE" id="A9BQF2"/>
    <dbReference type="EnsemblBacteria" id="ABX33562">
        <property type="protein sequence ID" value="ABX33562"/>
        <property type="gene ID" value="Daci_0916"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_0916"/>
    <dbReference type="eggNOG" id="COG0583">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_039613_39_0_4"/>
    <dbReference type="OMA" id="DVDFLIF"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003700">
        <property type="term" value="F:DNA-binding transcription factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd08417">
        <property type="entry name" value="PBP2_Nitroaromatics_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005119">
        <property type="entry name" value="LysR_subst-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000847">
        <property type="entry name" value="Tscrpt_reg_HTH_LysR"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036390">
        <property type="entry name" value="WH_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037402">
        <property type="entry name" value="YidZ_PBP2"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00126">
        <property type="entry name" value="HTH_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03466">
        <property type="entry name" value="LysR_substrate"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00039">
        <property type="entry name" value="HTHLYSR"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46785">
        <property type="entry name" value="SSF46785"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50931">
        <property type="entry name" value="HTH_LYSR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HTH lysR-type" evidence="2">
        <location>
            <begin position="12"/>
            <end position="69"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00009437"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS50931"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ABX33562.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="339" mass="36320" checksum="321C8DF80E476737" modified="2008-01-15" version="1">MECMRQIDGSQLDGRLLQLLLAVLETGSVTAAAQRLGVTQSAVSHLLDKLRAITGDRLFVRQGRGIAPTAHALALQDPARELLRQMQQFGQGPSFDPAHWRAEITIAANDLQRELLLPALARRLRTQAPAAMLRVIDSGAPDAELLRSDACLLAISPRPPDATDIVQKRLFTDEYAVFYDSAVRQPPASLADYLQAEHATVAYADRQALDLDLQLQARGLERRFAVRVPGFAALAAFVRGTPLLATAPSLLGRTALSSLGSFVVPVDCPPLPMFMIWHTRHQADPAHAWLRGQLQQVVAQALGGAGPSMPAKQGAAQQACCAVADLEGAVAHGRAHAGA</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="85" xmlns="http://uniprot.org/uniprot">
    <accession>A9BQG6</accession>
    <name>A9BQG6_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="3 11">Pyruvate kinase</fullName>
            <ecNumber evidence="3 11">2.7.1.40</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="14" type="ordered locus">Daci_0930</name>
    </gene>
    <organism evidence="14 15">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="14 15" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="15">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="15" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="15">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="11">
            <text>ATP + pyruvate = ADP + H(+) + phosphoenolpyruvate</text>
            <dbReference type="Rhea" id="RHEA:18157"/>
            <dbReference type="ChEBI" id="CHEBI:15361"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:58702"/>
            <dbReference type="ChEBI" id="CHEBI:456216"/>
            <dbReference type="EC" id="2.7.1.40"/>
        </reaction>
    </comment>
    <comment type="pathway">
        <text evidence="1 11">Carbohydrate degradation; glycolysis; pyruvate from D-glyceraldehyde 3-phosphate: step 5/5.</text>
    </comment>
    <comment type="similarity">
        <text evidence="2 11">Belongs to the pyruvate kinase family.</text>
    </comment>
    <dbReference type="EC" id="2.7.1.40" evidence="3 11"/>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX33576.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012202862.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_0930"/>
    <dbReference type="PRIDE" id="A9BQG6"/>
    <dbReference type="EnsemblBacteria" id="ABX33576">
        <property type="protein sequence ID" value="ABX33576"/>
        <property type="gene ID" value="Daci_0930"/>
    </dbReference>
    <dbReference type="GeneID" id="60685493"/>
    <dbReference type="KEGG" id="dac:Daci_0930"/>
    <dbReference type="eggNOG" id="COG0469">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_015439_0_2_4"/>
    <dbReference type="OMA" id="QVPIVQK"/>
    <dbReference type="UniPathway" id="UPA00109">
        <property type="reaction ID" value="UER00188"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016301">
        <property type="term" value="F:kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000287">
        <property type="term" value="F:magnesium ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030955">
        <property type="term" value="F:potassium ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004743">
        <property type="term" value="F:pyruvate kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.33.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.20.20.60">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.1380.20">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001697">
        <property type="entry name" value="Pyr_Knase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015813">
        <property type="entry name" value="Pyrv/PenolPyrv_Kinase-like_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR040442">
        <property type="entry name" value="Pyrv_Kinase-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011037">
        <property type="entry name" value="Pyrv_Knase-like_insert_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015793">
        <property type="entry name" value="Pyrv_Knase_brl"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015795">
        <property type="entry name" value="Pyrv_Knase_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036918">
        <property type="entry name" value="Pyrv_Knase_C_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015806">
        <property type="entry name" value="Pyrv_Knase_insert_dom_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11817">
        <property type="entry name" value="PTHR11817"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00224">
        <property type="entry name" value="PK"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02887">
        <property type="entry name" value="PK_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR01050">
        <property type="entry name" value="PYRUVTKNASE"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50800">
        <property type="entry name" value="SSF50800"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51621">
        <property type="entry name" value="SSF51621"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52935">
        <property type="entry name" value="SSF52935"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01064">
        <property type="entry name" value="pyruv_kin"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="7" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="9 11" id="KW-0324">Glycolysis</keyword>
    <keyword evidence="6 11 14" id="KW-0418">Kinase</keyword>
    <keyword evidence="8 11" id="KW-0460">Magnesium</keyword>
    <keyword evidence="4" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="5" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="10 14" id="KW-0670">Pyruvate</keyword>
    <keyword evidence="15" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="11 14" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="PK" evidence="12">
        <location>
            <begin position="5"/>
            <end position="343"/>
        </location>
    </feature>
    <feature type="domain" description="PK_C" evidence="13">
        <location>
            <begin position="363"/>
            <end position="474"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004997"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00008663"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00012142"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022777"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00022842"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00023152"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00023317"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="RuleBase" id="RU000504"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="12">
        <source>
            <dbReference type="Pfam" id="PF00224"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="13">
        <source>
            <dbReference type="Pfam" id="PF02887"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="14">
        <source>
            <dbReference type="EMBL" id="ABX33576.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="15">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="478" mass="51457" checksum="195C2041C0BB1B87" modified="2008-01-15" version="1">MQVRRATKIVATLGPASSDPQLLEQMVREGVNVVRLNFSHGKAQDHIDRATMVREAAQRAGREVAIMADLQGPKIRVGKFAEGKVMLEPGARFVLDASRTAPGDLGGVGLDYKELPRDVKPGDVLLLNDGLIVLTVDHVRGDEVHTTVKLGGELSNNKGINKQGGGLTAPALTAKDMEDIKTAMSFQADYVAVSFPKNATDMEMARQLCNVAAAQYGHKPGLIAKIERAEAIPRLEEILHVSDGIMVARGDLAVEVGNAAVPALQKKMIRMARDMDKFVITATQMMESMITNPVPTRAEVSDVANAVLDGTDAVMLSAETAAGKYPLETVQEMAKICAAAEAAEDPDSDAEFTGRQFSRIDQSIAIGALFTAHHLGAKAIVAMTDSGSTALWMSRHRIHIPIYALTPKISTQRKMAMYRNVRPLLMDTSADRDTALDQAEGHLRARNIVQSGDVYAITCGEPMGQPGGTNMLKICRVN</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-05-25" version="58" xmlns="http://uniprot.org/uniprot">
    <accession>A9BQM4</accession>
    <name>A9BQM4_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="7">Inner-membrane translocator</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ordered locus">Daci_0079</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="8" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX32726.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012202019.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_0079"/>
    <dbReference type="EnsemblBacteria" id="ABX32726">
        <property type="protein sequence ID" value="ABX32726"/>
        <property type="gene ID" value="Daci_0079"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_0079"/>
    <dbReference type="eggNOG" id="COG4177">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_031365_0_1_4"/>
    <dbReference type="OMA" id="EIASWHQ"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015658">
        <property type="term" value="F:branched-chain amino acid transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd06581">
        <property type="entry name" value="TM_PBP1_LivM_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001851">
        <property type="entry name" value="ABC_transp_permease"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043428">
        <property type="entry name" value="LivM-like"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30482">
        <property type="entry name" value="PTHR30482"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02653">
        <property type="entry name" value="BPD_transp_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="5 6" id="KW-0472">Membrane</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 6" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="4 6" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="60"/>
            <end position="78"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="85"/>
            <end position="104"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="110"/>
            <end position="131"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="138"/>
            <end position="155"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="185"/>
            <end position="204"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="231"/>
            <end position="252"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="272"/>
            <end position="297"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="318"/>
            <end position="343"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="ABX32726.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="361" mass="37521" checksum="86EE77E395FFD47A" modified="2008-01-15" version="1">MAVSNPSPALLAAAVQPLQPVQPAEMPQRACRWQACAVPLACVALLALAGPWWSDYLSGLVVKTMILAIFALSLQLLVGGTGLVSLGHAAFMGLGAYAAVLSAGNEGGSLPAMLGWALLASGGYALLVGLLSLRTRGIYFIMVTLAFAQMAYFVVHDTGIGGGSDGIYLMARPALGAIDMEIPRVQYYVVLAALVLVYAFLAGLRQSRFGAALAGIRVNEQRMRAAGFTTYGYKLAAFVLAGMLAGVAGFLLAVRDAVVNPELLSWHHSGEVLLMVILGGLGSLRGAVLGTVAFIALKEVLSTHAIVGPMADHWQLSLGLAIIVLVALLPKGLMGLIGLAGLARQRAGVHNEVHHKEAGHG</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="67" xmlns="http://uniprot.org/uniprot">
    <accession>A9BQP1</accession>
    <name>A9BQP1_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">DNA polymerase III, epsilon subunit</fullName>
            <ecNumber evidence="2">2.7.7.7</ecNumber>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_0097</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EC" id="2.7.7.7" evidence="2"/>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX32743.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012202036.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_0097"/>
    <dbReference type="PRIDE" id="A9BQP1"/>
    <dbReference type="EnsemblBacteria" id="ABX32743">
        <property type="protein sequence ID" value="ABX32743"/>
        <property type="gene ID" value="Daci_0097"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_0097"/>
    <dbReference type="eggNOG" id="COG0847">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_047806_7_1_4"/>
    <dbReference type="OMA" id="FDQKFWD"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003887">
        <property type="term" value="F:DNA-directed DNA polymerase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004527">
        <property type="term" value="F:exonuclease activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003676">
        <property type="term" value="F:nucleic acid binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.420.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013520">
        <property type="entry name" value="Exonuclease_RNaseT/DNA_pol3"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012337">
        <property type="entry name" value="RNaseH-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036397">
        <property type="entry name" value="RNaseH_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00929">
        <property type="entry name" value="RNase_T"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00479">
        <property type="entry name" value="EXOIII"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53098">
        <property type="entry name" value="SSF53098"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0548">Nucleotidyltransferase</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Exonuclease" evidence="1">
        <location>
            <begin position="4"/>
            <end position="171"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="SMART" id="SM00479"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX32743.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="211" mass="22804" checksum="82A47421EE60D781" modified="2008-01-15" version="1">MPQPIAVIDFETTGMAPAQGARATEVAIVLIEGGQVVDRFQSLMRTGAWIPPFITRLTGITNAMVAAAPPAEEVMRDAARFVGSAPMVAHNAAFDSKFWQSELALAGEAAPQPFACTVLLSRRIYPEAPSHSLSRLTAHLGLPVAERAHRALADAEMAAALLARMQQDLCLRHALAWPEHALLMQLQRCTRARMTAWLNENAAPAQMSMAL</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="51" xmlns="http://uniprot.org/uniprot">
    <accession>A9BQP6</accession>
    <name>A9BQP6_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="1">5-carboxymethyl-2-hydroxymuconate isomerase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Daci_0102</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="2" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX32748.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012202041.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_0102"/>
    <dbReference type="PRIDE" id="A9BQP6"/>
    <dbReference type="EnsemblBacteria" id="ABX32748">
        <property type="protein sequence ID" value="ABX32748"/>
        <property type="gene ID" value="Daci_0102"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_0102"/>
    <dbReference type="eggNOG" id="COG3232">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_139188_1_0_4"/>
    <dbReference type="OMA" id="IEYTANV"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008704">
        <property type="term" value="F:5-carboxymethyl-2-hydroxymuconate delta-isomerase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0019439">
        <property type="term" value="P:aromatic compound catabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd00580">
        <property type="entry name" value="CHMI"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.429.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004220">
        <property type="entry name" value="5-COMe_2-OHmuconate_Isoase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014347">
        <property type="entry name" value="Tautomerase/MIF_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37950">
        <property type="entry name" value="PTHR37950"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02962">
        <property type="entry name" value="CHMI"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55331">
        <property type="entry name" value="SSF55331"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0413">Isomerase</keyword>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ABX32748.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="144" mass="15279" checksum="88E4F284721F2F2A" modified="2008-01-15" version="1">MPHVVILYTASLDAHTDMTQLCRALADTMLTVRAEDGAQVFPTGGTRVLAYPAPHSAVADGGAAGRAAGGDGDYGFIYINLRMGRGRSAAVQQQAGDALLACARRHLQPLFAQRHLGLTVQVDESPGQVYDGKHSTLHPLFSRP</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="60" xmlns="http://uniprot.org/uniprot">
    <accession>A9BQQ2</accession>
    <name>A9BQQ2_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">4-hydroxyphenylacetate degradation bifunctional isomerase/decarboxylase, HpaG1 subunit</fullName>
            <ecNumber evidence="2">4.1.1.68</ecNumber>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_0108</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EC" id="4.1.1.68" evidence="2"/>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX32754.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012202047.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_0108"/>
    <dbReference type="PRIDE" id="A9BQQ2"/>
    <dbReference type="EnsemblBacteria" id="ABX32754">
        <property type="protein sequence ID" value="ABX32754"/>
        <property type="gene ID" value="Daci_0108"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_0108"/>
    <dbReference type="eggNOG" id="COG0179">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_028458_4_1_4"/>
    <dbReference type="OMA" id="IGTPHSR"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008704">
        <property type="term" value="F:5-carboxymethyl-2-hydroxymuconate delta-isomerase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0018800">
        <property type="term" value="F:5-oxopent-3-ene-1,2,5-tricarboxylate decarboxylase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.850.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011234">
        <property type="entry name" value="Fumarylacetoacetase-like_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036663">
        <property type="entry name" value="Fumarylacetoacetase_C_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012686">
        <property type="entry name" value="HPA_isomer/decarb_N"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01557">
        <property type="entry name" value="FAA_hydrolase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56529">
        <property type="entry name" value="SSF56529"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR02305">
        <property type="entry name" value="HpaG-N-term"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0413">Isomerase</keyword>
    <keyword evidence="2" id="KW-0456">Lyase</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="FAA_hydrolase" evidence="1">
        <location>
            <begin position="17"/>
            <end position="219"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF01557"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX32754.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="226" mass="23957" checksum="F90035869E85636A" modified="2008-01-15" version="1">MQIQPFLLDDGLALGTVYGTLLNQQATVQRLSPQFDSAPYKAAPRAPVLYLKPRNTWARDGAAVAVPADPGEVRVDASIGLVIGRSATRVSEATALDHVAGWLIASDLTLPHENYYRPAIRQRCRDGFCPLGALVRGTGFDAQAATLTVSINGEQVWQRGFADLVRSPARLLADVTEFMTLSPGDVLLLGPGEGAPLARPGDRVVIEVPGLGRLTHSVVAEQGAAA</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2021-09-29" version="55" xmlns="http://uniprot.org/uniprot">
    <accession>A9BQS6</accession>
    <name>A9BQS6_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">EamA domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="4" type="ordered locus">Daci_0132</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="5" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX32778.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012202071.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_0132"/>
    <dbReference type="TCDB" id="2.A.7.37.1">
        <property type="family name" value="the drug/metabolite transporter (dmt) superfamily"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="ABX32778">
        <property type="protein sequence ID" value="ABX32778"/>
        <property type="gene ID" value="Daci_0132"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_0132"/>
    <dbReference type="eggNOG" id="COG0697">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_131462_3_0_4"/>
    <dbReference type="OMA" id="QPWIYGA"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000620">
        <property type="entry name" value="EamA_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00892">
        <property type="entry name" value="EamA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0472">Membrane</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="2" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="48"/>
            <end position="67"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="74"/>
            <end position="94"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="100"/>
            <end position="118"/>
        </location>
    </feature>
    <feature type="domain" description="EamA" evidence="3">
        <location>
            <begin position="7"/>
            <end position="116"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="124"/>
            <end position="164"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF00892"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="ABX32778.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="164" mass="17295" checksum="154977E3B77BFA9C" modified="2008-01-15" version="1">MKRFYFIGFLVLMAFDTLAQLSFKQAGNAALPLEFSTAWLARVFGQPWIYGAFVGYIGAFFSWMTLLKRAPIGPAFAASHLEILSVLALSYWLFDERIGMPQIIGCLFIVAGIACLAVSETQEAEGPGADDDTPGHAGGNPGAGSASAGAAHLAASAEHGTHRG</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="44" xmlns="http://uniprot.org/uniprot">
    <accession>A9BR48</accession>
    <name>A9BR48_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Putative lipoprotein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Daci_0460</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="2" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX33106.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012202392.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_0460"/>
    <dbReference type="PRIDE" id="A9BR48"/>
    <dbReference type="EnsemblBacteria" id="ABX33106">
        <property type="protein sequence ID" value="ABX33106"/>
        <property type="gene ID" value="Daci_0460"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_0460"/>
    <dbReference type="eggNOG" id="COG3616">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_119528_1_1_4"/>
    <dbReference type="OMA" id="HLTWLLA"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR021341">
        <property type="entry name" value="DUF2958"/>
    </dbReference>
    <dbReference type="Pfam" id="PF11171">
        <property type="entry name" value="DUF2958"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0449">Lipoprotein</keyword>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ABX33106.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="115" mass="12648" checksum="972AA75B34B0F9E6" modified="2008-01-15" version="1">MNRLITEDERRQLLAHGQNRAAGGSIDPLPVVRLFTPDAHLTWLLAALDPADGDTAFGLIDLGLGMPELGTVKLSDLESIVGPRKQPVMRDRYFQAARPLSEYLRLAQENGSILD</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="76" xmlns="http://uniprot.org/uniprot">
    <accession>A9BR75</accession>
    <name>A9BR75_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Putative transcriptional regulator, ArsR family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_0487</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX33133.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_0487"/>
    <dbReference type="PRIDE" id="A9BR75"/>
    <dbReference type="EnsemblBacteria" id="ABX33133">
        <property type="protein sequence ID" value="ABX33133"/>
        <property type="gene ID" value="Daci_0487"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_0487"/>
    <dbReference type="eggNOG" id="COG0640">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_097806_2_2_4"/>
    <dbReference type="OMA" id="QETRLHI"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003700">
        <property type="term" value="F:DNA-binding transcription factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd00090">
        <property type="entry name" value="HTH_ARSR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011991">
        <property type="entry name" value="ArsR-like_HTH"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001845">
        <property type="entry name" value="HTH_ArsR_DNA-bd_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036390">
        <property type="entry name" value="WH_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00778">
        <property type="entry name" value="HTHARSR"/>
    </dbReference>
    <dbReference type="SMART" id="SM00418">
        <property type="entry name" value="HTH_ARSR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46785">
        <property type="entry name" value="SSF46785"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50987">
        <property type="entry name" value="HTH_ARSR_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HTH arsR-type" evidence="1">
        <location>
            <begin position="4"/>
            <end position="101"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS50987"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX33133.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="115" mass="12493" checksum="FC8A2A07B26A9C13" modified="2008-01-15" version="1">MLYYRNMKETQAVSALGALAHTQRLRVFRALVVAGPEGLTPSALADQLDVARNSLSFHLKELAHAGLVTIEQQGRNLIYRADFTQMNGLLGYLTEHCCQGSTCEVSDSSSACTSC</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="49" xmlns="http://uniprot.org/uniprot">
    <accession>A9BRR6</accession>
    <name>A9BRR6_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">NYN domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_0987</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX33633.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012202919.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_0987"/>
    <dbReference type="PRIDE" id="A9BRR6"/>
    <dbReference type="EnsemblBacteria" id="ABX33633">
        <property type="protein sequence ID" value="ABX33633"/>
        <property type="gene ID" value="Daci_0987"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_0987"/>
    <dbReference type="eggNOG" id="COG1432">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_076076_0_0_4"/>
    <dbReference type="OMA" id="NFYYGCL"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004540">
        <property type="term" value="F:ribonuclease activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR021139">
        <property type="entry name" value="NYN_MARF1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01936">
        <property type="entry name" value="NYN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="NYN" evidence="1">
        <location>
            <begin position="8"/>
            <end position="168"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF01936"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX33633.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="234" mass="26440" checksum="854E14AD42B38211" modified="2008-01-15" version="1">MVAWTLTRTTIYIDGYNLYYSRLKGTPYKWLDIAALFRDRILLPQDPGAEVVAIKYFTAPVKASYARHGEASVQAQTQYLRALQARDPGLIQIVNGFHVFEPTSLPSYQAGANPSKNNVSRVWMIEEKQTDVNLALHAYRDAVRGECDQLVICSNDSDVEPALRMLREDVPAARLGLVMPLRDRTAADGKVPNKRLTALAHWVRHHIRDDELAQSQLPLNVQTRKKPASKPAHW</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="86" xmlns="http://uniprot.org/uniprot">
    <accession>A9BRS4</accession>
    <name>A9BRS4_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Transcriptional regulator, LysR family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Daci_0995</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="4" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the LysR transcriptional regulatory family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX33641.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012202927.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_0995"/>
    <dbReference type="PRIDE" id="A9BRS4"/>
    <dbReference type="EnsemblBacteria" id="ABX33641">
        <property type="protein sequence ID" value="ABX33641"/>
        <property type="gene ID" value="Daci_0995"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_0995"/>
    <dbReference type="eggNOG" id="COG0583">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_039613_37_1_4"/>
    <dbReference type="OMA" id="RMKAPTC"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003700">
        <property type="term" value="F:DNA-binding transcription factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005119">
        <property type="entry name" value="LysR_subst-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000847">
        <property type="entry name" value="Tscrpt_reg_HTH_LysR"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036390">
        <property type="entry name" value="WH_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00126">
        <property type="entry name" value="HTH_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03466">
        <property type="entry name" value="LysR_substrate"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00039">
        <property type="entry name" value="HTHLYSR"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46785">
        <property type="entry name" value="SSF46785"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50931">
        <property type="entry name" value="HTH_LYSR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HTH lysR-type" evidence="2">
        <location>
            <begin position="6"/>
            <end position="63"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00009437"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS50931"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ABX33641.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="303" mass="33140" checksum="1574B10BCEB4CED9" modified="2008-01-15" version="1">MRQLPPGTRALRSFEAAGRHLNFTRAADELGLTPAAVSHQIKEMEEQLGLVLFTRNSRSMQLTPAGSVLLEATAEALGLLRRATGRARQLARGETRLRLSLGARFATQWLLPRLPRFRAAHPQIELSFDICDEVRDFDADDIDAAIRFGTGRDPHTLAVRLFDARVIPVCSPALLQSGPPLARPVDLLAHTLCHVDCRVDGQVWPNWPMWMAAAGVEGLDAGRCIAFTDSSHVVQAVLDGGAVGLVEQDLVAEDLARGRLVRLFDIAVGLGPAYAYHLLYPQRSQGQPAIEALRAWVLREAGL</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="76" xmlns="http://uniprot.org/uniprot">
    <accession>A9BRT7</accession>
    <name>A9BRT7_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="8">ABC transporter related</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="8" type="ordered locus">Daci_1008</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="9" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX33654.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012202940.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_1008"/>
    <dbReference type="PRIDE" id="A9BRT7"/>
    <dbReference type="EnsemblBacteria" id="ABX33654">
        <property type="protein sequence ID" value="ABX33654"/>
        <property type="gene ID" value="Daci_1008"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_1008"/>
    <dbReference type="eggNOG" id="COG4604">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_000604_1_11_4"/>
    <dbReference type="OMA" id="IAMVICQ"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003593">
        <property type="entry name" value="AAA+_ATPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003439">
        <property type="entry name" value="ABC_transporter-like_ATP-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00005">
        <property type="entry name" value="ABC_tran"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00382">
        <property type="entry name" value="AAA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50893">
        <property type="entry name" value="ABC_TRANSPORTER_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3 6" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="1" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="5" id="KW-0472">Membrane</keyword>
    <keyword evidence="2 6" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4" id="KW-1278">Translocase</keyword>
    <feature type="domain" description="ABC transporter" evidence="7">
        <location>
            <begin position="2"/>
            <end position="236"/>
        </location>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <begin position="34"/>
            <end position="41"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022967"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00434"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="PROSITE" id="PS50893"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="ABX33654.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="252" mass="27688" checksum="14C901A57573B476" modified="2008-01-15" version="1">MIEVRDLLKRHGGTAVLQELNFDVPERALTAIIGPNGAGKSTLLSLVSRLMPITAGKVRVAGLDVATTPTEALARIMAILRQDNQSTLRLTVRDLVGFGRFPHSKGRLGPEDLRHVDEAMEYLQLTPLAERFLDELSGGQRQRAYIAMVLCQDTPFILLDEPLNNLDMAHAVSMMGLLRRAVTERGKTVVMVLHDINFASCYADHIIALKDGRLAVAGTPAEVVQDEVLSSLYGIPVSVHEVKGRRLCHYFG</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="87" xmlns="http://uniprot.org/uniprot">
    <accession>A9BRV3</accession>
    <name>A9BRV3_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Transcriptional regulator, DeoR family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ordered locus">Daci_1024</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="6" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX33670.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012202956.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_1024"/>
    <dbReference type="PRIDE" id="A9BRV3"/>
    <dbReference type="EnsemblBacteria" id="ABX33670">
        <property type="protein sequence ID" value="ABX33670"/>
        <property type="gene ID" value="Daci_1024"/>
    </dbReference>
    <dbReference type="GeneID" id="60685586"/>
    <dbReference type="KEGG" id="dac:Daci_1024"/>
    <dbReference type="eggNOG" id="COG1349">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_060699_0_0_4"/>
    <dbReference type="OMA" id="STHEPGF"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003700">
        <property type="term" value="F:DNA-binding transcription factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014036">
        <property type="entry name" value="DeoR_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001034">
        <property type="entry name" value="DeoR_HTH"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037171">
        <property type="entry name" value="NagB/RpiA_transferase-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018356">
        <property type="entry name" value="Tscrpt_reg_HTH_DeoR_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036390">
        <property type="entry name" value="WH_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00455">
        <property type="entry name" value="DeoRC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08220">
        <property type="entry name" value="HTH_DeoR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00037">
        <property type="entry name" value="HTHLACR"/>
    </dbReference>
    <dbReference type="SMART" id="SM00420">
        <property type="entry name" value="HTH_DEOR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF100950">
        <property type="entry name" value="SSF100950"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46785">
        <property type="entry name" value="SSF46785"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00894">
        <property type="entry name" value="HTH_DEOR_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51000">
        <property type="entry name" value="HTH_DEOR_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0804">Transcription</keyword>
    <keyword evidence="1" id="KW-0805">Transcription regulation</keyword>
    <feature type="domain" description="HTH deoR-type" evidence="4">
        <location>
            <begin position="3"/>
            <end position="58"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023015"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023163"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="PROSITE" id="PS51000"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="ABX33670.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="254" mass="27735" checksum="157E44ACCCB50490" modified="2008-01-15" version="1">MNTNPRQLQLLDEVRSRQSTSVEQLAEILGVTLQTVRRDIQKLADAGLMVRFHGGVRVPSATVENLGHTQRQVLHAEGKSRIARAVAEAIPNGCSLILNIGTTTEAVAQALLKHRGLRVITNNLNVAAILSSNADCEVIVAGGVVRTRDRGIVGEAAVDFIRQFKVDIALIGISAIEPDGSLRDFDMREVKVAQTIIAQSREVWLAADHSKFHRQAMVELARLDQIDRLFTDTAPPAPFDALLREAEVQCVVAQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="58" xmlns="http://uniprot.org/uniprot">
    <accession>A9BRY9</accession>
    <name>A9BRY9_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Chorismate mutase</fullName>
            <ecNumber evidence="1">5.4.99.5</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Daci_0753</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="4" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EC" id="5.4.99.5" evidence="1"/>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX33399.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012202685.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_0753"/>
    <dbReference type="PRIDE" id="A9BRY9"/>
    <dbReference type="EnsemblBacteria" id="ABX33399">
        <property type="protein sequence ID" value="ABX33399"/>
        <property type="gene ID" value="Daci_0753"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_0753"/>
    <dbReference type="eggNOG" id="COG1605">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_131518_2_0_4"/>
    <dbReference type="OMA" id="LIHWFIN"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004106">
        <property type="term" value="F:chorismate mutase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046417">
        <property type="term" value="P:chorismate metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.59.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036263">
        <property type="entry name" value="Chorismate_II_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036979">
        <property type="entry name" value="CM_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002701">
        <property type="entry name" value="CM_II_prokaryot"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01817">
        <property type="entry name" value="CM_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00830">
        <property type="entry name" value="CM_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48600">
        <property type="entry name" value="SSF48600"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51168">
        <property type="entry name" value="CHORISMATE_MUT_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Chorismate mutase" evidence="2">
        <location>
            <begin position="13"/>
            <end position="103"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00012404"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS51168"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ABX33399.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="116" mass="13241" checksum="95EF1C35F98D0B32" modified="2008-01-15" version="1">MSTDRAKQAIDLVQHCTDMLDVRRNVDALDDVLVPLLVTRMGYMQQAARIKADAAQVRDEGRIEAIVRRVRERTAAEGGQPDVMEAVYRHLMEECIAYEHREFARLREGGAQDDRS</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="60" xmlns="http://uniprot.org/uniprot">
    <accession>A9BRZ7</accession>
    <name>A9BRZ7_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="3">RND efflux system, outer membrane lipoprotein, NodT family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Daci_0761</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="4" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="2">Cell membrane</location>
            <topology evidence="2">Lipid-anchor</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="1 2">Belongs to the outer membrane factor (OMF) (TC 1.B.17) family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX33407.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012202693.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_0761"/>
    <dbReference type="PRIDE" id="A9BRZ7"/>
    <dbReference type="EnsemblBacteria" id="ABX33407">
        <property type="protein sequence ID" value="ABX33407"/>
        <property type="gene ID" value="Daci_0761"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_0761"/>
    <dbReference type="eggNOG" id="COG1538">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_012817_13_3_4"/>
    <dbReference type="OMA" id="PGTHRTQ"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015562">
        <property type="term" value="F:efflux transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003423">
        <property type="entry name" value="OMP_efflux"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010131">
        <property type="entry name" value="RND_efflux_OM_lipoprot_NodT"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02321">
        <property type="entry name" value="OEP"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01845">
        <property type="entry name" value="outer_NodT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2 3" id="KW-0449">Lipoprotein</keyword>
    <keyword evidence="2" id="KW-0472">Membrane</keyword>
    <keyword evidence="2" id="KW-0564">Palmitate</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0732">Signal</keyword>
    <keyword evidence="2" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="2" id="KW-1134">Transmembrane beta strand</keyword>
    <feature type="signal peptide" evidence="2">
        <location>
            <begin position="1"/>
            <end position="27"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5001436698" evidence="2">
        <location>
            <begin position="28"/>
            <end position="491"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00007613"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="RuleBase" id="RU362097"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ABX33407.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="491" mass="52211" checksum="D83F2FB19938C89B" modified="2008-01-15" version="1">MTLPFPRTAAAALAAALATALAGCASLAPPHEPPPLPTPEAWPAHLQAGAQGVAAAGLPWREYFTDPALRQLIATALEHNRDLRVAALRAEEARAAFQIQRSELFPAIGVGGQAARARVPGDLNLSGRSVVSGEYRAEVGFSSWELDLWGRVRSLKDAALQTWLASDAGRHAVQTALIAQVADGYLGLRELDERVAIARETLATRQESFRIFTRREAVGASSRLQLAQVQTLLTQAQALLAQLELARAQQLHALAQLVGAHPGPLPAAAPFDDALVLAELRPGLPSELLTARPDIAAAEHQLRAARAQIGAARAAFFPRIALTARWGTASAELDGLFDGGSRAWAFVPTVSLPIFDGGRRRANLELGEIRSDMAVAQYEKAIQTAFREVADGLAARRWLSEQITVQRTAVQAQAERARLAQLRYDNGSAAYLEVLDAQRDLLAARQQLVQARRALLSSQVGLYAALGGGSGAEPAALPATLPATPADPPNS</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="82" xmlns="http://uniprot.org/uniprot">
    <accession>A9BS77</accession>
    <name>A9BS77_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Transcriptional regulator, AsnC family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ordered locus">Daci_0841</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="6" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX33487.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012202773.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_0841"/>
    <dbReference type="PRIDE" id="A9BS77"/>
    <dbReference type="EnsemblBacteria" id="ABX33487">
        <property type="protein sequence ID" value="ABX33487"/>
        <property type="gene ID" value="Daci_0841"/>
    </dbReference>
    <dbReference type="GeneID" id="60685403"/>
    <dbReference type="KEGG" id="dac:Daci_0841"/>
    <dbReference type="eggNOG" id="COG1522">
        <property type="taxonomic scope" value="Bacteria"/>
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    <dbReference type="HOGENOM" id="CLU_091233_0_0_4"/>
    <dbReference type="OMA" id="VSMRQED"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043565">
        <property type="term" value="F:sequence-specific DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006355">
        <property type="term" value="P:regulation of transcription, DNA-templated"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="CDD" id="cd00090">
        <property type="entry name" value="HTH_ARSR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011991">
        <property type="entry name" value="ArsR-like_HTH"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000485">
        <property type="entry name" value="AsnC-type_HTH_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011008">
        <property type="entry name" value="Dimeric_a/b-barrel"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019888">
        <property type="entry name" value="Tscrpt_reg_AsnC-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019887">
        <property type="entry name" value="Tscrpt_reg_AsnC/Lrp_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019885">
        <property type="entry name" value="Tscrpt_reg_HTH_AsnC-type_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036390">
        <property type="entry name" value="WH_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01037">
        <property type="entry name" value="AsnC_trans_reg"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00033">
        <property type="entry name" value="HTHASNC"/>
    </dbReference>
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        <property type="entry name" value="HTH_ASNC"/>
        <property type="match status" value="1"/>
    </dbReference>
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        <property type="entry name" value="SSF46785"/>
        <property type="match status" value="1"/>
    </dbReference>
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        <property type="entry name" value="SSF54909"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00519">
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        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50956">
        <property type="entry name" value="HTH_ASNC_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0804">Transcription</keyword>
    <keyword evidence="1" id="KW-0805">Transcription regulation</keyword>
    <feature type="domain" description="HTH asnC-type" evidence="4">
        <location>
            <begin position="4"/>
            <end position="65"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023015"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023163"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="PROSITE" id="PS50956"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="ABX33487.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="167" mass="18283" checksum="7DE09A47B16C6864" modified="2008-01-15" version="1">MQTLDKFDIAILGHLQADARLTNAELAQRVGLSAAPCWRRVRALEEAGFIRGYHADIDRHKIGLGVLAFVRLDAVRTAGTLTLEMEDAIRKLPEVVTCHYISGTGTFELQVVARDLDSFAQFARNTLLNLPNVKDMQTSFSLGEIKSSHALPLSQLGPMAGKGLPDQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="70" xmlns="http://uniprot.org/uniprot">
    <accession>A9BSE1</accession>
    <name>A9BSE1_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Nitrate reductase, beta subunit</fullName>
            <ecNumber evidence="2">1.7.99.4</ecNumber>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_1110</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
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                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EC" id="1.7.99.4" evidence="2"/>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX33755.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012203041.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_1110"/>
    <dbReference type="PRIDE" id="A9BSE1"/>
    <dbReference type="EnsemblBacteria" id="ABX33755">
        <property type="protein sequence ID" value="ABX33755"/>
        <property type="gene ID" value="Daci_1110"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_1110"/>
    <dbReference type="eggNOG" id="COG1140">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_043374_5_2_4"/>
    <dbReference type="OMA" id="VYFNWQT"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009325">
        <property type="term" value="C:nitrate reductase complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008940">
        <property type="term" value="F:nitrate reductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0042126">
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        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
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        <property type="match status" value="1"/>
    </dbReference>
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        <property type="match status" value="1"/>
    </dbReference>
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        <property type="entry name" value="4Fe4S_Fe-S-bd"/>
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    <dbReference type="InterPro" id="IPR029263">
        <property type="entry name" value="Nitr_red_bet_C"/>
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        <property type="entry name" value="Nitr_red_bet_C_sf"/>
    </dbReference>
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    </dbReference>
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        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF14711">
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        <property type="match status" value="1"/>
    </dbReference>
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        <property type="entry name" value="narH"/>
        <property type="match status" value="1"/>
    </dbReference>
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        <property type="entry name" value="4FE4S_FER_2"/>
        <property type="match status" value="3"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="4Fe-4S ferredoxin-type" evidence="1">
        <location>
            <begin position="7"/>
            <end position="35"/>
        </location>
    </feature>
    <feature type="domain" description="4Fe-4S ferredoxin-type" evidence="1">
        <location>
            <begin position="174"/>
            <end position="205"/>
        </location>
    </feature>
    <feature type="domain" description="4Fe-4S ferredoxin-type" evidence="1">
        <location>
            <begin position="207"/>
            <end position="236"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS51379"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX33755.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="513" mass="58107" checksum="9E841DF3E274887F" modified="2008-01-15" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="55" xmlns="http://uniprot.org/uniprot">
    <accession>A9BSQ0</accession>
    <name>A9BSQ0_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="1">IS66 Orf2 family protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Daci_1411</name>
        <name evidence="2" type="ordered locus">Daci_3091</name>
    </gene>
    <organism evidence="1 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
            <strain evidence="1">SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="1" key="3">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX34055.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX35729.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012203341.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_1411"/>
    <dbReference type="PRIDE" id="A9BSQ0"/>
    <dbReference type="EnsemblBacteria" id="ABX34055">
        <property type="protein sequence ID" value="ABX34055"/>
        <property type="gene ID" value="Daci_1411"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="ABX35729">
        <property type="protein sequence ID" value="ABX35729"/>
        <property type="gene ID" value="Daci_3091"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_1411"/>
    <dbReference type="KEGG" id="dac:Daci_3091"/>
    <dbReference type="eggNOG" id="COG3436">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_128110_0_1_4"/>
    <dbReference type="OMA" id="DGIDWRN"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008878">
        <property type="entry name" value="Transposase_IS66_Orf2"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR36455">
        <property type="entry name" value="PTHR36455"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF05717">
        <property type="entry name" value="TnpB_IS66"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ABX34055.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX35729.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="116" mass="13709" checksum="189AA5A5C421DD89" modified="2008-01-15" version="1">MFRLDDTLTVYLHRPAIDFRTGINGLAILVEQALGMNPFAAAVYVFSNRQRNRVKILVWERNGFWLLMKRLEQDRFIWPDEAVVPTLTVEQLHWLLDGIDLAVTQRHPQRFYERVA</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-01-19" version="28" xmlns="http://uniprot.org/uniprot">
    <accession>A9BSR5</accession>
    <name>A9BSR5_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Daci_1426</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="2" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX34070.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_1426"/>
    <dbReference type="EnsemblBacteria" id="ABX34070">
        <property type="protein sequence ID" value="ABX34070"/>
        <property type="gene ID" value="Daci_1426"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_1426"/>
    <dbReference type="HOGENOM" id="CLU_2522066_0_0_4"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ABX34070.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="84" mass="9509" checksum="547F6156ABD03C1B" modified="2008-01-15" version="1">MRPDGRRNVDRITPKKNSRFLRENEKRLISALLGISLYEVEETYGKVLVLDMSDGGMGSIEFVAGNDDEKLFGGVGKVFIFKRK</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="66" xmlns="http://uniprot.org/uniprot">
    <accession>A9BT73</accession>
    <name>A9BT73_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Electron transport protein SCO1/SenC</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ordered locus">Daci_1998</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="5" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the SCO1/2 family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX34638.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012203923.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_1998"/>
    <dbReference type="PRIDE" id="A9BT73"/>
    <dbReference type="EnsemblBacteria" id="ABX34638">
        <property type="protein sequence ID" value="ABX34638"/>
        <property type="gene ID" value="Daci_1998"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_1998"/>
    <dbReference type="eggNOG" id="COG1999">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_050131_3_0_4"/>
    <dbReference type="OMA" id="HYCLGLP"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="CDD" id="cd02968">
        <property type="entry name" value="SCO"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003782">
        <property type="entry name" value="SCO1/SenC"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036249">
        <property type="entry name" value="Thioredoxin-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013766">
        <property type="entry name" value="Thioredoxin_domain"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR12151">
        <property type="entry name" value="PTHR12151"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02630">
        <property type="entry name" value="SCO1-SenC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52833">
        <property type="entry name" value="SSF52833"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51352">
        <property type="entry name" value="THIOREDOXIN_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2" id="KW-0186">Copper</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Thioredoxin" evidence="3">
        <location>
            <begin position="59"/>
            <end position="221"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00010996"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023008"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="PROSITE" id="PS51352"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="ABX34638.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="221" mass="23912" checksum="F4887FE7B2D36424" modified="2008-01-15" version="1">MFRSDCHVAPQRAADFSSTLPSVASIALSRRACLGGGLAALALLAGCKPATVPFKGIDLTGAQYGRDFRLRDADGRERTLADFKGQALMVFFGFTQCPDVCPTALTRALEIRELLGADGARLAVAFITIDPERDTAQVLKAYVGAFDPGFVALRGDEAQTAEVAREFKVFYKKVPTGASYTMDHSAITYVFDPEGRLRVAFRHEQDAQDCAADLRQILQAA</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="67" xmlns="http://uniprot.org/uniprot">
    <accession>A9BT74</accession>
    <name>A9BT74_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Diguanylate cyclase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Daci_1999</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="4" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX34639.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012203924.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_1999"/>
    <dbReference type="PRIDE" id="A9BT74"/>
    <dbReference type="EnsemblBacteria" id="ABX34639">
        <property type="protein sequence ID" value="ABX34639"/>
        <property type="gene ID" value="Daci_1999"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_1999"/>
    <dbReference type="eggNOG" id="COG2199">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_000445_134_2_4"/>
    <dbReference type="OMA" id="ICIPVES"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd01949">
        <property type="entry name" value="GGDEF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.70.270">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000160">
        <property type="entry name" value="GGDEF_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029787">
        <property type="entry name" value="Nucleotide_cyclase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035965">
        <property type="entry name" value="PAS-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043128">
        <property type="entry name" value="Rev_trsase/Diguanyl_cyclase"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00990">
        <property type="entry name" value="GGDEF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00267">
        <property type="entry name" value="GGDEF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55073">
        <property type="entry name" value="SSF55073"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55785">
        <property type="entry name" value="SSF55785"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00254">
        <property type="entry name" value="GGDEF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50887">
        <property type="entry name" value="GGDEF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="9"/>
            <end position="32"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="291"/>
            <end position="314"/>
        </location>
    </feature>
    <feature type="domain" description="GGDEF" evidence="2">
        <location>
            <begin position="479"/>
            <end position="612"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS50887"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ABX34639.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="612" mass="67035" checksum="CB898B4899AFC80C" modified="2008-01-15" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-05-25" version="78" xmlns="http://uniprot.org/uniprot">
    <accession>A9BTG0</accession>
    <name>A9BTG0_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Putative transcriptional regulator, ArsR family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_2289</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX34928.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012204211.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_2289"/>
    <dbReference type="EnsemblBacteria" id="ABX34928">
        <property type="protein sequence ID" value="ABX34928"/>
        <property type="gene ID" value="Daci_2289"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_2289"/>
    <dbReference type="eggNOG" id="COG0640">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_097806_2_2_4"/>
    <dbReference type="OMA" id="CDCPTGD"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003700">
        <property type="term" value="F:DNA-binding transcription factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd00090">
        <property type="entry name" value="HTH_ARSR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011991">
        <property type="entry name" value="ArsR-like_HTH"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001845">
        <property type="entry name" value="HTH_ArsR_DNA-bd_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036390">
        <property type="entry name" value="WH_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00778">
        <property type="entry name" value="HTHARSR"/>
    </dbReference>
    <dbReference type="SMART" id="SM00418">
        <property type="entry name" value="HTH_ARSR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46785">
        <property type="entry name" value="SSF46785"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50987">
        <property type="entry name" value="HTH_ARSR_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HTH arsR-type" evidence="1">
        <location>
            <begin position="1"/>
            <end position="95"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS50987"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX34928.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="109" mass="11505" checksum="F9077D933A2D08E7" modified="2008-01-15" version="1">MQETQAIRSLSALAHEARLRVFRALVVAGPEGLTPSALAEQLCIAPNALSFHLKELSHAQLVSQERQGRNVLYRAAFAAMNDLLAYLTENCCQGAPCAVADAPACGAAA</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="56" xmlns="http://uniprot.org/uniprot">
    <accession>A9BTP4</accession>
    <name>A9BTP4_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="6 12">Epoxyqueuosine reductase QueH</fullName>
            <ecNumber evidence="5 12">1.17.99.6</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="11 12">Queuosine biosynthesis protein QueH</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="12" type="primary">queH</name>
        <name evidence="13" type="ordered locus">Daci_2670</name>
    </gene>
    <organism evidence="13 14">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="13 14" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="14">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="14" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="14">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="2 12">Catalyzes the conversion of epoxyqueuosine (oQ) to queuosine (Q), which is a hypermodified base found in the wobble positions of tRNA(Asp), tRNA(Asn), tRNA(His) and tRNA(Tyr).</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1 12">
            <text>AH2 + epoxyqueuosine(34) in tRNA = A + H2O + queuosine(34) in tRNA</text>
            <dbReference type="Rhea" id="RHEA:32159"/>
            <dbReference type="Rhea" id="RHEA-COMP:10345"/>
            <dbReference type="Rhea" id="RHEA-COMP:10346"/>
            <dbReference type="ChEBI" id="CHEBI:13193"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:17499"/>
            <dbReference type="ChEBI" id="CHEBI:82831"/>
            <dbReference type="ChEBI" id="CHEBI:82834"/>
            <dbReference type="EC" id="1.17.99.6"/>
        </reaction>
    </comment>
    <comment type="pathway">
        <text evidence="3 12">tRNA modification; tRNA-queuosine biosynthesis.</text>
    </comment>
    <comment type="similarity">
        <text evidence="4 12">Belongs to the QueH family.</text>
    </comment>
    <dbReference type="EC" id="1.17.99.6" evidence="5 12"/>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX35308.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_003056085.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_2670"/>
    <dbReference type="PRIDE" id="A9BTP4"/>
    <dbReference type="EnsemblBacteria" id="ABX35308">
        <property type="protein sequence ID" value="ABX35308"/>
        <property type="gene ID" value="Daci_2670"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_2670"/>
    <dbReference type="eggNOG" id="COG1636">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_088177_0_0_4"/>
    <dbReference type="OMA" id="PNIHPYT"/>
    <dbReference type="UniPathway" id="UPA00392"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051539">
        <property type="term" value="F:4 iron, 4 sulfur cluster binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0052693">
        <property type="term" value="F:epoxyqueuosine reductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008616">
        <property type="term" value="P:queuosine biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008033">
        <property type="term" value="P:tRNA processing"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_02089">
        <property type="entry name" value="QueH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003828">
        <property type="entry name" value="QueH"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR36701">
        <property type="entry name" value="PTHR36701"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02677">
        <property type="entry name" value="QueH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="12" id="KW-0004">4Fe-4S</keyword>
    <keyword evidence="10 12" id="KW-1015">Disulfide bond</keyword>
    <keyword evidence="9 12" id="KW-0408">Iron</keyword>
    <keyword evidence="12" id="KW-0411">Iron-sulfur</keyword>
    <keyword evidence="7 12" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="8 12" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="12" id="KW-0671">Queuosine biosynthesis</keyword>
    <keyword evidence="12" id="KW-0676">Redox-active center</keyword>
    <keyword evidence="14" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="12" id="KW-0819">tRNA processing</keyword>
    <feature type="binding site" evidence="12">
        <location>
            <position position="24"/>
        </location>
        <ligand>
            <name>[4Fe-4S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:49883"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="12">
        <location>
            <position position="25"/>
        </location>
        <ligand>
            <name>[4Fe-4S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:49883"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="12">
        <location>
            <position position="103"/>
        </location>
        <ligand>
            <name>[4Fe-4S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:49883"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="12">
        <location>
            <position position="106"/>
        </location>
        <ligand>
            <name>[4Fe-4S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:49883"/>
        </ligand>
    </feature>
    <feature type="disulfide bond" description="Redox-active" evidence="12">
        <location>
            <begin position="186"/>
            <end position="188"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00000050"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00002268"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00004691"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00008207"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00012622"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00016895"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00023002"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00023004"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00023157"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="ARBA" id="ARBA00031446"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="12">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_02089"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="13">
        <source>
            <dbReference type="EMBL" id="ABX35308.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="14">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="222" mass="25798" checksum="AC9664E94E3D7846" modified="2008-01-15" version="1">MNTTVERKALALPGGHDKVLLHSCCAPCSGEVMEAMLASGIDYTIFFYNPNIHPLKEYELRKNENIRFAEQFGVPFVDADYDRDNWFERAKGMEHEPERGVRCTMCFDMRFERTALYAHEHGFPVITSSLGISRWKNMQQINDCGVRAAAKYSGLMYWEYNWRKGGGSARMIEISKRENFYQQEYCGCVYSLRDTNRHRVESGRERIQLGVTFYGDEQPPKD</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-05-25" version="64" xmlns="http://uniprot.org/uniprot">
    <accession>A9BTV5</accession>
    <name>A9BTV5_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">GCN5-related N-acetyltransferase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_2731</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX35369.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_011517543.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="ABX35369">
        <property type="protein sequence ID" value="ABX35369"/>
        <property type="gene ID" value="Daci_2731"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_2731"/>
    <dbReference type="eggNOG" id="COG3153">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_081840_2_0_4"/>
    <dbReference type="OMA" id="CDAFIPE"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008080">
        <property type="term" value="F:N-acetyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016181">
        <property type="entry name" value="Acyl_CoA_acyltransferase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000182">
        <property type="entry name" value="GNAT_dom"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55729">
        <property type="entry name" value="SSF55729"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51186">
        <property type="entry name" value="GNAT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="N-acetyltransferase" evidence="1">
        <location>
            <begin position="3"/>
            <end position="154"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS51186"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX35369.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="172" mass="18242" checksum="FF19ACC902BB4A5A" modified="2008-01-15" version="1">MTIQLRHETTNDIAAIEAVTIAAFADAPHTSHTEQFIVRALRDASELTLSIVAEEHGQVVGHVALSPVTITNDHGHKAKGWCGLGPISVLPQRQGHGIGSRLMEQALSELRAMQAEGCVLLGEPAYYGRFGFQAHAGLQLPGVPPGYFLALAFHGPVPEGIAQYSDAFNAAA</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-05-25" version="39" xmlns="http://uniprot.org/uniprot">
    <accession>A9BU63</accession>
    <name>A9BU63_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Daci_3140</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="2" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX35778.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_3140"/>
    <dbReference type="EnsemblBacteria" id="ABX35778">
        <property type="protein sequence ID" value="ABX35778"/>
        <property type="gene ID" value="Daci_3140"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_3140"/>
    <dbReference type="eggNOG" id="ENOG5033DFY">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_2369988_0_0_4"/>
    <dbReference type="OMA" id="HYEADDG"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ABX35778.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="103" mass="11601" checksum="5091E56C165A1024" modified="2008-01-15" version="1">MIYPKELNMPTRTNANQIAFRYRAVDSATGVTRETAKRLAEHLGVDETQAIHRALHELAVRMLPQYEADDGPLTAAQVRQIKKKVPQGEQRSVKSSLFDLEAL</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="81" xmlns="http://uniprot.org/uniprot">
    <accession>A9BUD8</accession>
    <name>A9BUD8_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Transcriptional regulator, MarR family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_1196</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX33841.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012203127.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_1196"/>
    <dbReference type="PRIDE" id="A9BUD8"/>
    <dbReference type="EnsemblBacteria" id="ABX33841">
        <property type="protein sequence ID" value="ABX33841"/>
        <property type="gene ID" value="Daci_1196"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_1196"/>
    <dbReference type="eggNOG" id="COG1846">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_083287_3_0_4"/>
    <dbReference type="OMA" id="MMVLWER"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003700">
        <property type="term" value="F:DNA-binding transcription factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000835">
        <property type="entry name" value="HTH_MarR-typ"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036390">
        <property type="entry name" value="WH_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01047">
        <property type="entry name" value="MarR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00598">
        <property type="entry name" value="HTHMARR"/>
    </dbReference>
    <dbReference type="SMART" id="SM00347">
        <property type="entry name" value="HTH_MARR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46785">
        <property type="entry name" value="SSF46785"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50995">
        <property type="entry name" value="HTH_MARR_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HTH marR-type" evidence="1">
        <location>
            <begin position="17"/>
            <end position="147"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS50995"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX33841.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="155" mass="17356" checksum="EA5247053774B10C" modified="2008-01-15" version="1">MPRNALPTDTPELLRLDNQVCFALYSASLAMTKLYKPLLDGIGLTYPQYLVMLVLWERDGLTVSEIGEQLTLDSGTLTPLLKRLEGANLLERVRDAQDERRVRITLTPQGRALRDAAEKIPACVLQSTQCTLPELQALTQQLGALRERLAPRRSD</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-01-19" version="56" xmlns="http://uniprot.org/uniprot">
    <accession>A9BUG9</accession>
    <name>A9BUG9_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="7">Protein MgtC</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="8" type="ordered locus">Daci_1228</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="9" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="7">Cell inner membrane</location>
            <topology evidence="7">Multi-pass membrane protein</topology>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2 7">Belongs to the MgtC/SapB family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX33872.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012203158.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_1228"/>
    <dbReference type="EnsemblBacteria" id="ABX33872">
        <property type="protein sequence ID" value="ABX33872"/>
        <property type="gene ID" value="Daci_1228"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_1228"/>
    <dbReference type="eggNOG" id="COG1285">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_079292_0_0_4"/>
    <dbReference type="OMA" id="VIMREEG"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003416">
        <property type="entry name" value="MgtC/SapB/SrpB/YhiD_fam"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33778">
        <property type="entry name" value="PTHR33778"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02308">
        <property type="entry name" value="MgtC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR01837">
        <property type="entry name" value="MGTCSAPBPROT"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="7" id="KW-0997">Cell inner membrane</keyword>
    <keyword evidence="3" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="6 7" id="KW-0472">Membrane</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4 7" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="5 7" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="12"/>
            <end position="31"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="71"/>
            <end position="88"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="108"/>
            <end position="135"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00009298"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="RuleBase" id="RU365041"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="ABX33872.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="238" mass="24963" checksum="F79E89D580C120AB" modified="2008-01-15" version="1">MQALQNLNPGAMLDTFVSLTTAFVFGALIGLERQVRQRTAGLRTNTLVAVGAAVFVDLAVRLGGAEGATRVVAYVVSGVGFLGAGAIMKEGANITGLNTAATLWGSAAVGACAGASLVAEAGLATLFVLASNTLLRPVVNRINRRPVDDESTESTYYVYAICHRGAQGDVREQMLELLENASYPVRGVETHAFGPQDTEIEAMLYATSVDSDELDRVIAAIEALPGVLQAFWNAGTEE</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="89" xmlns="http://uniprot.org/uniprot">
    <accession>A9BUQ3</accession>
    <name>A9BUQ3_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">Sulfur carrier protein FdhD</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="primary">fdhD</name>
        <name evidence="5" type="ordered locus">Daci_1517</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="6" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="3">Required for formate dehydrogenase (FDH) activity. Acts as a sulfur carrier protein that transfers sulfur from IscS to the molybdenum cofactor prior to its insertion into FDH.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="3">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="3">Belongs to the FdhD family.</text>
    </comment>
    <comment type="caution">
        <text evidence="3">Lacks conserved residue(s) required for the propagation of feature annotation.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX34161.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012203447.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_1517"/>
    <dbReference type="PRIDE" id="A9BUQ3"/>
    <dbReference type="EnsemblBacteria" id="ABX34161">
        <property type="protein sequence ID" value="ABX34161"/>
        <property type="gene ID" value="Daci_1517"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_1517"/>
    <dbReference type="eggNOG" id="COG1526">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_056887_2_0_4"/>
    <dbReference type="OMA" id="RYCAGAT"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0097163">
        <property type="term" value="F:sulfur carrier activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016783">
        <property type="term" value="F:sulfurtransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006777">
        <property type="term" value="P:Mo-molybdopterin cofactor biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00187">
        <property type="entry name" value="FdhD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016193">
        <property type="entry name" value="Cytidine_deaminase-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003786">
        <property type="entry name" value="FdhD"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30592">
        <property type="entry name" value="PTHR30592"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02634">
        <property type="entry name" value="FdhD-NarQ"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF015626">
        <property type="entry name" value="FdhD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53927">
        <property type="entry name" value="SSF53927"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00129">
        <property type="entry name" value="fdhD_narQ"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="1 3" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="2 3" id="KW-0501">Molybdenum cofactor biosynthesis</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="4">
        <location>
            <begin position="1"/>
            <end position="21"/>
        </location>
    </feature>
    <feature type="active site" description="Cysteine persulfide intermediate" evidence="3">
        <location>
            <position position="154"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022490"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023150"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00187"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="ABX34161.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="310" mass="31775" checksum="DB2DEE1709086032" modified="2008-01-15" version="1">MNATTEHAPAPVPAPDAGPGAADAACAAPPAIAALRTHAVARHRLGEGGAVSIQAEPQVLASEVPIALVFNGISHAVMMGTPSDLEDFALGFALTEGILDSAADCYGIEVRTVAAQAAGLPAGMDGIEVQLDVASRCFARLKDRRRSMSGRTGCGVCGVDSFAALDLSFDPLPAHDWIARVDADTVCAAIAALPPLQLLNAEAGAVHAAGWAGLDGQLTDVLEDVGRHNALDKLVGRLSRTGRLGEAGFVVLSSRGSHELVRKCAKVGIAALATISAPTAMGVQMAELIGLRFWGLCRPPKAVLYAPGRT</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="57" xmlns="http://uniprot.org/uniprot">
    <accession>A9BV23</accession>
    <name>A9BV23_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Restriction endonuclease</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Daci_1845</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="4" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX34485.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_1845"/>
    <dbReference type="PRIDE" id="A9BV23"/>
    <dbReference type="EnsemblBacteria" id="ABX34485">
        <property type="protein sequence ID" value="ABX34485"/>
        <property type="gene ID" value="Daci_1845"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_1845"/>
    <dbReference type="eggNOG" id="COG1787">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_050636_2_0_4"/>
    <dbReference type="OMA" id="QQSWREF"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004519">
        <property type="term" value="F:endonuclease activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009307">
        <property type="term" value="P:DNA restriction-modification system"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011335">
        <property type="entry name" value="Restrct_endonuc-II-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007560">
        <property type="entry name" value="Restrct_endonuc_IV_Mrr"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04471">
        <property type="entry name" value="Mrr_cat"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52980">
        <property type="entry name" value="SSF52980"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-0255">Endonuclease</keyword>
    <keyword evidence="3" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-0540">Nuclease</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="44"/>
            <end position="61"/>
        </location>
    </feature>
    <feature type="domain" description="Mrr_cat" evidence="2">
        <location>
            <begin position="81"/>
            <end position="187"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF04471"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ABX34485.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="190" mass="20555" checksum="90F3D99337B37DB8" modified="2008-01-15" version="1">MKFKMAHNSLFAILLRSRWWISIALAALVTLVSTALLPKDIAPFAAITALPFFGIGCVAAWRQLRAPSPAKVEQALEIAAQQSWREFADRLDRAWQAEGYTVTRLSDKDGADFVLEREGRATVASAKRWKAGVHGMEPLRALLAAGQARDAATVCYLSLQPPAENAAAWAKQQGIALISGKDLGSLLAKA</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="62" xmlns="http://uniprot.org/uniprot">
    <accession>A9BV26</accession>
    <name>A9BV26_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Aldehyde oxidase and xanthine dehydrogenase molybdopterin binding</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_1848</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX34488.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012203773.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_1848"/>
    <dbReference type="PRIDE" id="A9BV26"/>
    <dbReference type="EnsemblBacteria" id="ABX34488">
        <property type="protein sequence ID" value="ABX34488"/>
        <property type="gene ID" value="Daci_1848"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_1848"/>
    <dbReference type="eggNOG" id="COG1529">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_013917_0_0_4"/>
    <dbReference type="OMA" id="MGQHVGT"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016491">
        <property type="term" value="F:oxidoreductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000674">
        <property type="entry name" value="Ald_Oxase/Xan_DH_a/b"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036856">
        <property type="entry name" value="Ald_Oxase/Xan_DH_a/b_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008274">
        <property type="entry name" value="AldOxase/xan_DH_Mopterin-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037165">
        <property type="entry name" value="AldOxase/xan_DH_Mopterin-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012368">
        <property type="entry name" value="OxRdtase_Mopterin-bd_su_IorB"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02738">
        <property type="entry name" value="Ald_Xan_dh_C2"/>
        <property type="match status" value="3"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF036389">
        <property type="entry name" value="IOR_B"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM01008">
        <property type="entry name" value="Ald_Xan_dh_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54665">
        <property type="entry name" value="SSF54665"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56003">
        <property type="entry name" value="SSF56003"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Ald_Xan_dh_C" evidence="1">
        <location>
            <begin position="218"/>
            <end position="304"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="SMART" id="SM01008"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX34488.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="780" mass="83522" checksum="FB55E4C9E1595E86" modified="2008-01-15" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="59" xmlns="http://uniprot.org/uniprot">
    <accession>A9BVF3</accession>
    <name>A9BVF3_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Putative transporter signal peptide protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Daci_2382</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="4" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX35020.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012204302.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_2382"/>
    <dbReference type="PRIDE" id="A9BVF3"/>
    <dbReference type="EnsemblBacteria" id="ABX35020">
        <property type="protein sequence ID" value="ABX35020"/>
        <property type="gene ID" value="Daci_2382"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_2382"/>
    <dbReference type="eggNOG" id="COG0683">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_027128_3_0_4"/>
    <dbReference type="OMA" id="VAEWHPN"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR028081">
        <property type="entry name" value="Leu-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR028082">
        <property type="entry name" value="Peripla_BP_I"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13458">
        <property type="entry name" value="Peripla_BP_6"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53822">
        <property type="entry name" value="SSF53822"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="1">
        <location>
            <begin position="1"/>
            <end position="26"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5002735129" evidence="1">
        <location>
            <begin position="27"/>
            <end position="436"/>
        </location>
    </feature>
    <feature type="domain" description="Peripla_BP_6" evidence="2">
        <location>
            <begin position="41"/>
            <end position="399"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF13458"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ABX35020.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="436" mass="46965" checksum="5D872905E2F2694C" modified="2008-01-15" version="1">MNKLRRKVLKSGAMALFAAPALAALAANERGQPVPPPRGEPIRLALIESLSGPFANTGEAVFRNLLWATERVNARGGVPLPAAQGGARPLAIERHDSKGQNEEALSALRAAIDGGARVVMQGNSSAVAAVLVDAIAKHNERDPARRVLYLNYSAVDPALTNERCSFWHFRFDAHADMRMAALMQVLREDAAVRSAYLIGQDYSFGQAVLREARRQLAAQRPDVAIVGDELHPVGRVKDFAPYAAKIKASGAQAVITGNWGNDLMLLVKAARESGFDGRFYTFYGNALGAPAALGEAGVGKVLAVADWLPNVPGPDSQAFYKSFRERFPRPADDYVHMRMQLMIEALAQSMARAGSTDTVAVAQALEGAEVALAGRKGRMRAADHQFQQALVVGVMDRQGAPGVPFDVEGSGYGFRVVREIEAARAEQPAMCRMRRP</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="46" xmlns="http://uniprot.org/uniprot">
    <accession>A9BW73</accession>
    <name>A9BW73_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Daci_3251</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="2" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX35889.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012205089.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="PRIDE" id="A9BW73"/>
    <dbReference type="EnsemblBacteria" id="ABX35889">
        <property type="protein sequence ID" value="ABX35889"/>
        <property type="gene ID" value="Daci_3251"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_3251"/>
    <dbReference type="eggNOG" id="ENOG5030WMI">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_139712_2_0_4"/>
    <dbReference type="OMA" id="LTWQGHE"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019650">
        <property type="entry name" value="DUF2513"/>
    </dbReference>
    <dbReference type="Pfam" id="PF10711">
        <property type="entry name" value="DUF2513"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ABX35889.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="119" mass="13353" checksum="D14DEA045C402686" modified="2008-01-15" version="1">MKRDMDLIRDILFWMEEHEADFPKIPEKSEREIGYHCYLLADAGLIEAAKSTPFEETIPQAIPISLTSRGHDFIDSARSKTVWSTVKSKVATTTGGVSIAIMTELLKEELKRRLGLSGS</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="54" xmlns="http://uniprot.org/uniprot">
    <accession>A9BWF3</accession>
    <name>A9BWF3_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="7">Permease YjgP/YjgQ family protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ordered locus">Daci_3537</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="8" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX36173.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012205373.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_3537"/>
    <dbReference type="PRIDE" id="A9BWF3"/>
    <dbReference type="EnsemblBacteria" id="ABX36173">
        <property type="protein sequence ID" value="ABX36173"/>
        <property type="gene ID" value="Daci_3537"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_3537"/>
    <dbReference type="eggNOG" id="COG0795">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_028799_1_1_4"/>
    <dbReference type="OMA" id="WFTSKLA"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043190">
        <property type="term" value="C:ATP-binding cassette (ABC) transporter complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0055085">
        <property type="term" value="P:transmembrane transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR030923">
        <property type="entry name" value="LptG"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005495">
        <property type="entry name" value="LptG/LptF_permease"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33529">
        <property type="entry name" value="PTHR33529"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03739">
        <property type="entry name" value="LptF_LptG"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR04408">
        <property type="entry name" value="LptG_lptG"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="5 6" id="KW-0472">Membrane</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 6" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="4 6" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="12"/>
            <end position="30"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="63"/>
            <end position="81"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="101"/>
            <end position="119"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="285"/>
            <end position="304"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="311"/>
            <end position="332"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="344"/>
            <end position="367"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="ABX36173.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="369" mass="40909" checksum="1644A8213101B56A" modified="2008-01-15" version="1">MRVLRNLLYRDIIAAVGYVTLAFLALFFFFDLVDELRWVGRGGDNGYQITHALLFVVLRIPSHLYELMPITVLIGTIYVMARFAQSSEFTIMRTSGMGPWLALRTLMVLGLGFVLATFGTGDYLAPAAENAGQNIRAIHLAQLSRGATGAWLKERQGDHSIAINVRAIRGPGDFSNVRIFDFDGQGRISAQIHAQAAQVSEDGESWTLQGVEASRLKAKADAGMVLLREKEDSLVWKTGISAEMVSAALLKPDRMSTISLFQYVRHLEANGQAAQKYEIEFWRKVFYPMSCLVMVVLALPFAYLHFRSGGIAAYVFGGVMAGISFFLLNNVFGYIGTLQTWSPWLTAAAPGLLYSLLSLTAFTWLVLRR</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="34" xmlns="http://uniprot.org/uniprot">
    <accession>A9BWG9</accession>
    <name>A9BWG9_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Daci_3555</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="2" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX36189.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_3555"/>
    <dbReference type="PRIDE" id="A9BWG9"/>
    <dbReference type="EnsemblBacteria" id="ABX36189">
        <property type="protein sequence ID" value="ABX36189"/>
        <property type="gene ID" value="Daci_3555"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_3555"/>
    <dbReference type="HOGENOM" id="CLU_2011528_0_0_4"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ABX36189.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="123" mass="12700" checksum="554D9F3CDC47139E" modified="2008-01-15" version="1">MLARTVGEKWAAPVAAGMGEGVVTAGQQMEQATGENQQRNALAALGAGALTGAIGVGAGRVANRLGLETAETAMANIGTGATAEVPLSAQRRILGAWSPKRCCRNCPSRHRSRCGRTMLRANR</sequence>
</entry>
<entry dataset="Swiss-Prot" created="2009-09-22" modified="2022-08-03" version="77" xmlns="http://uniprot.org/uniprot">
    <accession>A9BWI7</accession>
    <name>EX7L_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Exodeoxyribonuclease 7 large subunit</fullName>
            <ecNumber evidence="1">3.1.11.6</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="1">Exodeoxyribonuclease VII large subunit</fullName>
            <shortName evidence="1">Exonuclease VII large subunit</shortName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="1" type="primary">xseA</name>
        <name type="ordered locus">Daci_3573</name>
    </gene>
    <organism>
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference key="1">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain>DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="1">Bidirectionally degrades single-stranded DNA into large acid-insoluble oligonucleotides, which are then degraded further into small acid-soluble oligonucleotides.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>Exonucleolytic cleavage in either 5'- to 3'- or 3'- to 5'-direction to yield nucleoside 5'-phosphates.</text>
            <dbReference type="EC" id="3.1.11.6"/>
        </reaction>
    </comment>
    <comment type="subunit">
        <text evidence="1">Heterooligomer composed of large and small subunits.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="1">Belongs to the XseA family.</text>
    </comment>
    <dbReference type="EC" id="3.1.11.6" evidence="1"/>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX36207.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012205407.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A9BWI7"/>
    <dbReference type="SMR" id="A9BWI7"/>
    <dbReference type="STRING" id="398578.Daci_3573"/>
    <dbReference type="PRIDE" id="A9BWI7"/>
    <dbReference type="EnsemblBacteria" id="ABX36207">
        <property type="protein sequence ID" value="ABX36207"/>
        <property type="gene ID" value="Daci_3573"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_3573"/>
    <dbReference type="eggNOG" id="COG1570">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_023625_3_1_4"/>
    <dbReference type="OMA" id="WPAVRFE"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009318">
        <property type="term" value="C:exodeoxyribonuclease VII complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008855">
        <property type="term" value="F:exodeoxyribonuclease VII activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003676">
        <property type="term" value="F:nucleic acid binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006308">
        <property type="term" value="P:DNA catabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd04489">
        <property type="entry name" value="ExoVII_LU_OBF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00378">
        <property type="entry name" value="Exonuc_7_L"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003753">
        <property type="entry name" value="Exonuc_VII_L"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020579">
        <property type="entry name" value="Exonuc_VII_lsu_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025824">
        <property type="entry name" value="OB-fold_nuc-bd_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30008">
        <property type="entry name" value="PTHR30008"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02601">
        <property type="entry name" value="Exonuc_VII_L"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13742">
        <property type="entry name" value="tRNA_anti_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00237">
        <property type="entry name" value="xseA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword id="KW-0963">Cytoplasm</keyword>
    <keyword id="KW-0269">Exonuclease</keyword>
    <keyword id="KW-0378">Hydrolase</keyword>
    <keyword id="KW-0540">Nuclease</keyword>
    <keyword id="KW-1185">Reference proteome</keyword>
    <feature type="chain" id="PRO_1000205670" description="Exodeoxyribonuclease 7 large subunit">
        <location>
            <begin position="1"/>
            <end position="445"/>
        </location>
    </feature>
    <evidence type="ECO:0000255" key="1">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00378"/>
        </source>
    </evidence>
    <sequence length="445" mass="48232" checksum="5B3536C7685401DB" modified="2008-01-15" version="1">MSGAFGAMNPAAAPLVWEVGALCRAVSDALQARFNPVAVRGEISGFSRAASGHCYFSIKDAGGQIRCAMFRRAAQLMDFSPRDGELVELRGRLGVYEQRGDLQLVVESMQRAGQGALFEQFLRLKARLEAEGLFDAARKRSLPPLPRGIGVVTSPGAAALHDVITALRRRVPHIPVVLVPALVQGVQAPASLIDALQRLYGLAREGAGSVDGSVAGAPPIDTILLVRGGGSIEDLWAFNDERLARTIVQSPVPLISGVGHETDFTIADFCADLRAPTPTAAAELVSQPREVWMGALQLMQGRLEDGVQRLLDRQQQRLDLAAQRLGRPSEQLARSRLQLSRQAQRLRHAMQLRLQRMDHAGQGLQAQLPAGMRRGLDRRADHLARMELRLQLLDPRLVLQRGYALLTDAEGHPVTEARSAPPGTALQAQLADGSLDLVVTQPRLL</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="48" xmlns="http://uniprot.org/uniprot">
    <accession>A9BWM4</accession>
    <name>A9BWM4_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_3920</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX36551.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_3920"/>
    <dbReference type="PRIDE" id="A9BWM4"/>
    <dbReference type="EnsemblBacteria" id="ABX36551">
        <property type="protein sequence ID" value="ABX36551"/>
        <property type="gene ID" value="Daci_3920"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_3920"/>
    <dbReference type="eggNOG" id="ENOG50336B2">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_1685142_0_0_4"/>
    <dbReference type="OMA" id="ITPRRAW"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="78"/>
            <end position="99"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX36551.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="138" mass="15109" checksum="B4A14ADD55C73098" modified="2008-01-15" version="1">MRSALLLLIMVAQLLIPLLHSHFGTPNQAGLHIHAAPSRVADSHFHLFVAHGSFTDVDEDHVEPFEVDVQDAIQPLDLLPMPLLAVVGLVLLTLGLRAARMRCIAPRPALPLQPMRLSPRWRGRVIRPSPAQAPPLAS</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="82" xmlns="http://uniprot.org/uniprot">
    <accession>A9BWY2</accession>
    <name>A9BWY2_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Pyridoxal kinase</fullName>
            <ecNumber evidence="1">2.7.1.35</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Daci_4336</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="4" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EC" id="2.7.1.35" evidence="1"/>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX36967.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012206139.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_4336"/>
    <dbReference type="PRIDE" id="A9BWY2"/>
    <dbReference type="EnsemblBacteria" id="ABX36967">
        <property type="protein sequence ID" value="ABX36967"/>
        <property type="gene ID" value="Daci_4336"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_4336"/>
    <dbReference type="eggNOG" id="COG2240">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_046496_3_1_4"/>
    <dbReference type="OMA" id="HVITHAR"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008478">
        <property type="term" value="F:pyridoxal kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016310">
        <property type="term" value="P:phosphorylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009443">
        <property type="term" value="P:pyridoxal 5'-phosphate salvage"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd01173">
        <property type="entry name" value="pyridoxal_pyridoxamine_kinase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.1190.20">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013749">
        <property type="entry name" value="PM/HMP-P_kinase-1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004625">
        <property type="entry name" value="PyrdxlKinase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029056">
        <property type="entry name" value="Ribokinase-like"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10534">
        <property type="entry name" value="PTHR10534"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08543">
        <property type="entry name" value="Phos_pyr_kin"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53613">
        <property type="entry name" value="SSF53613"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00687">
        <property type="entry name" value="pyridox_kin"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-0418">Kinase</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Phos_pyr_kin" evidence="2">
        <location>
            <begin position="106"/>
            <end position="271"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00012104"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF08543"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ABX36967.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="303" mass="31937" checksum="D2078ADF3A538679" modified="2008-01-15" version="1">MNACAPQDMLQPLAIDVVSVQSQVVYGRVGNNVAMPTLQALGLAAAAVPTVVFSNTPHYPSIHGGAISAEWFAGYLQDLGARGGLRQLQAVLAGYLGGPAQATLLADWVAGLLTQRPGLRVVVDPVIGDHDSGIYVDPAMVEAYQRHLLPLADGLTPNHFELERLTARPVRGMDDVVQAARSLLKGRTQWVAVTSASPELDGEPAQRMRVALVTRDDVHVITHARVDAVPKGTGDLFSAALTGHWLQGASLHEAAERACERIVQALERTRQAHSAELLLPSDPVAAQAAAGPAARAQAIPSPA</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2021-06-02" version="29" xmlns="http://uniprot.org/uniprot">
    <accession>A9BWZ6</accession>
    <name>A9BWZ6_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_4350</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX36981.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012206153.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_4350"/>
    <dbReference type="EnsemblBacteria" id="ABX36981">
        <property type="protein sequence ID" value="ABX36981"/>
        <property type="gene ID" value="Daci_4350"/>
    </dbReference>
    <dbReference type="GeneID" id="60688621"/>
    <dbReference type="KEGG" id="dac:Daci_4350"/>
    <dbReference type="HOGENOM" id="CLU_2860301_0_0_4"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="64"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Pro residues" evidence="1">
        <location>
            <begin position="1"/>
            <end position="54"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX36981.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="64" mass="6935" checksum="30541192A026C9A4" modified="2008-01-15" version="1">MNHPLPHAPNIPQVPTTPNDPVAPDDPNRQPGRPRGPEPIDPPTTAPPIELPPSPEQEQTRKGE</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="56" xmlns="http://uniprot.org/uniprot">
    <accession>A9BX15</accession>
    <name>A9BX15_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">FHA domain containing protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_4369</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX37000.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012206172.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_4369"/>
    <dbReference type="PRIDE" id="A9BX15"/>
    <dbReference type="EnsemblBacteria" id="ABX37000">
        <property type="protein sequence ID" value="ABX37000"/>
        <property type="gene ID" value="Daci_4369"/>
    </dbReference>
    <dbReference type="GeneID" id="60688641"/>
    <dbReference type="KEGG" id="dac:Daci_4369"/>
    <dbReference type="eggNOG" id="COG1716">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_074571_0_0_4"/>
    <dbReference type="OMA" id="LHAIVRW"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="CDD" id="cd00060">
        <property type="entry name" value="FHA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000253">
        <property type="entry name" value="FHA_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008984">
        <property type="entry name" value="SMAD_FHA_dom_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00498">
        <property type="entry name" value="FHA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00240">
        <property type="entry name" value="FHA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF49879">
        <property type="entry name" value="SSF49879"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50006">
        <property type="entry name" value="FHA_DOMAIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="FHA" evidence="1">
        <location>
            <begin position="19"/>
            <end position="68"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS50006"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX37000.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="314" mass="34439" checksum="85D5880E56EEC3FA" modified="2008-01-15" version="1">MALFRNQLDGRIVVLRPLHTFGRHPSVCQTVMKAPDVSQVHALFRWNRQTWEIVDQSRNGTMLNGVRLVAGRWTVLAVGAKLSMGEGAEAAWTVEDLGPPITCLSPGPGLPQDGPLALNPRGTLLPDAQEPEANVFFEDGRWLQESGDGTEPLVDGAMVHTSAGSWEFVQCDDLESTRESSFDPRAPKPPEVSFRFTVSQNEEHASLTVMSDGKPIALGERIHHYTLVTLARVRQQDAEKGLAPASQGWIELDALSRMLGVEPSYVNIQIFRAKHQILSALPECAASPALVERRRGSLRFGDFPFEIEGGARSA</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="49" xmlns="http://uniprot.org/uniprot">
    <accession>A9BXC3</accession>
    <name>A9BXC3_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Daci_5570</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="4" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX38199.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_5570"/>
    <dbReference type="PRIDE" id="A9BXC3"/>
    <dbReference type="EnsemblBacteria" id="ABX38199">
        <property type="protein sequence ID" value="ABX38199"/>
        <property type="gene ID" value="Daci_5570"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_5570"/>
    <dbReference type="eggNOG" id="COG1520">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_854496_0_0_4"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.130.10.10">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002372">
        <property type="entry name" value="PQQ_repeat"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011047">
        <property type="entry name" value="Quinoprotein_ADH-like_supfam"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015943">
        <property type="entry name" value="WD40/YVTN_repeat-like_dom_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13360">
        <property type="entry name" value="PQQ_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50998">
        <property type="entry name" value="SSF50998"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0449">Lipoprotein</keyword>
    <keyword evidence="1" id="KW-0564">Palmitate</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023139"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023288"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ABX38199.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="325" mass="34980" checksum="EEB1EC468C2E64BA" modified="2008-01-15" version="1">MWRLTEAVVVDGRVYTGGNSLRAYGEADGTLLWGSSFNSGPAVVSQGNVFSYADETTFAPNRLYVRNAVTGSSVNTPDHYEGQEDRSLLVADDDSVYAPFTFRMTAVDGIVAWRDYAPMRTLPSRASDRLYMADAANVYARDIKDGREIARIATGGEQREVRRATGTLADGQDRVLVSHFNQGNASLGSYSIGQKKKLWDVEASFLSRPALAGDTVYVVNVPQPAKGVATLEARSSATGAVFWSTPLPDAVVPVGEEAVYHVAVVGNLVFVSSDRKFGASTYAIDRSSHAVGWRHPVNGSLAVSDNGILYVAQALDASLFAINLR</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="73" xmlns="http://uniprot.org/uniprot">
    <accession>A9BXG9</accession>
    <name>A9BXG9_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="6">O-acetylhomoserine/O-acetylserine sulfhydrylase</fullName>
            <ecNumber evidence="6">2.5.1.49</ecNumber>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ordered locus">Daci_5616</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="7" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="1 4">
            <name>pyridoxal 5'-phosphate</name>
            <dbReference type="ChEBI" id="CHEBI:597326"/>
        </cofactor>
    </comment>
    <comment type="similarity">
        <text evidence="2 4">Belongs to the trans-sulfuration enzymes family.</text>
    </comment>
    <dbReference type="EC" id="2.5.1.49" evidence="6"/>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX38245.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012207414.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_5616"/>
    <dbReference type="PRIDE" id="A9BXG9"/>
    <dbReference type="EnsemblBacteria" id="ABX38245">
        <property type="protein sequence ID" value="ABX38245"/>
        <property type="gene ID" value="Daci_5616"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_5616"/>
    <dbReference type="eggNOG" id="COG2873">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_018986_4_0_4"/>
    <dbReference type="OMA" id="MQTKLIH"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003961">
        <property type="term" value="F:O-acetylhomoserine aminocarboxypropyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030170">
        <property type="term" value="F:pyridoxal phosphate binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0019346">
        <property type="term" value="P:transsulfuration"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd00614">
        <property type="entry name" value="CGS_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.640.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.1150.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000277">
        <property type="entry name" value="Cys/Met-Metab_PyrdxlP-dep_enz"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006235">
        <property type="entry name" value="OAc-hSer/O-AcSer_sulfhydrylase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015424">
        <property type="entry name" value="PyrdxlP-dep_Trfase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015421">
        <property type="entry name" value="PyrdxlP-dep_Trfase_major"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015422">
        <property type="entry name" value="PyrdxlP-dep_Trfase_small"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01053">
        <property type="entry name" value="Cys_Met_Meta_PP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF001434">
        <property type="entry name" value="CGS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53383">
        <property type="entry name" value="SSF53383"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01326">
        <property type="entry name" value="OAH_OAS_sulfhy"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3 4" id="KW-0663">Pyridoxal phosphate</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="6" id="KW-0808">Transferase</keyword>
    <feature type="region of interest" description="Disordered" evidence="5">
        <location>
            <begin position="455"/>
            <end position="475"/>
        </location>
    </feature>
    <feature type="modified residue" description="N6-(pyridoxal phosphate)lysine" evidence="3">
        <location>
            <position position="223"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001933"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00009077"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="PIRSR" id="PIRSR001434-2"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="RuleBase" id="RU362118"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="ABX38245.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="475" mass="50607" checksum="5AEA4EB5D00834A7" modified="2008-01-15" version="1">MTSATGTESAPHDAASDALWQQDTQALHAGYRGREQQRSAAVPIYQSTSFVFDSAQHGANLFGLVEEGDVYSRTANPTLAVLEQRIAALEGGVAALALASGMAAIDVALATLASAGDHVVVASQLYGGTHNFIAHVLASRGVQSTAVAKDDFQALRRAIGPRTKAVFVESVGNPSGGIADLRQLADISHAAGVALVVDNTVASPLLLRPFDWGADIVVHSATKAIGGHGNVLGGLIVDSGRFDWVAHARRYPQFSAPEPAYQGFVFTEKFPDRAFIARARAVLLRNCGAALAPHSAFLLLQGLETLGLRQERASRNTLAVIDFLQRHPLVERIHHASQSGHADHALALRQLRGGHVPALLGFELRGGRPAARAFYDALRLFLRLVNIGDSKSLAAIPAETTHSLLSDEELARVGIAPGLVRLSIGIEHPQDLLADLAQALEQAQGHALDQAVLAAEREQDREQNREQDRDQRLAA</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="48" xmlns="http://uniprot.org/uniprot">
    <accession>A9BXT3</accession>
    <name>A9BXT3_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_5731</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX38359.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012207528.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_5731"/>
    <dbReference type="PRIDE" id="A9BXT3"/>
    <dbReference type="EnsemblBacteria" id="ABX38359">
        <property type="protein sequence ID" value="ABX38359"/>
        <property type="gene ID" value="Daci_5731"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_5731"/>
    <dbReference type="eggNOG" id="COG3819">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_099769_0_0_4"/>
    <dbReference type="OMA" id="CAFLIHG"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010374">
        <property type="entry name" value="DUF969"/>
    </dbReference>
    <dbReference type="Pfam" id="PF06149">
        <property type="entry name" value="DUF969"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="6"/>
            <end position="22"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="27"/>
            <end position="45"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="57"/>
            <end position="76"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="163"/>
            <end position="185"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="197"/>
            <end position="216"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX38359.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="249" mass="26678" checksum="822DFB9BF6B58195" modified="2008-01-15" version="1">MLTDVNLWPLIGVAIIVAGFVLRFNPMLVVIVTAIGTALAAGFPVDKVLATIGTGFIKTRNLPLIILLPLAVIGLLERHGLRQHAQNWISSIKSATAGRLLIVYLAARQLTAAVGLTSLGGHPQMVRPLLAPMAEGATQSRFGILPAKVRDKLRAYSAATDNVGLFFGEDIFVAFGAIVLMTTFLKEAGIEVEPIHVALWGIPTAICAFVIHAWRLRRLDRMLERELAQYKAGVEADAANANATQAKGA</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="93" xmlns="http://uniprot.org/uniprot">
    <accession>A9BXU4</accession>
    <name>A9BXU4_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="7">Two component transcriptional regulator, winged helix family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ordered locus">Daci_5742</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="8" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX38370.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_5742"/>
    <dbReference type="PRIDE" id="A9BXU4"/>
    <dbReference type="EnsemblBacteria" id="ABX38370">
        <property type="protein sequence ID" value="ABX38370"/>
        <property type="gene ID" value="Daci_5742"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_5742"/>
    <dbReference type="eggNOG" id="COG0745">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_000445_30_1_4"/>
    <dbReference type="OMA" id="VWGYDAY"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005540">
        <property type="term" value="F:hyaluronic acid binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0007155">
        <property type="term" value="P:cell adhesion"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000160">
        <property type="term" value="P:phosphorelay signal transduction system"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006355">
        <property type="term" value="P:regulation of transcription, DNA-templated"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd00383">
        <property type="entry name" value="trans_reg_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011006">
        <property type="entry name" value="CheY-like_superfamily"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000538">
        <property type="entry name" value="Link_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001867">
        <property type="entry name" value="OmpR/PhoB-type_DNA-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016032">
        <property type="entry name" value="Sig_transdc_resp-reg_C-effctor"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001789">
        <property type="entry name" value="Sig_transdc_resp-reg_receiver"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR039420">
        <property type="entry name" value="WalR-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR48111">
        <property type="entry name" value="PTHR48111"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00072">
        <property type="entry name" value="Response_reg"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00486">
        <property type="entry name" value="Trans_reg_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00448">
        <property type="entry name" value="REC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00862">
        <property type="entry name" value="Trans_reg_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46894">
        <property type="entry name" value="SSF46894"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52172">
        <property type="entry name" value="SSF52172"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50963">
        <property type="entry name" value="LINK_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51755">
        <property type="entry name" value="OMPR_PHOB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50110">
        <property type="entry name" value="RESPONSE_REGULATORY"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1 3" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="2" id="KW-0597">Phosphoprotein</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Link" evidence="5">
        <location>
            <begin position="1"/>
            <end position="60"/>
        </location>
    </feature>
    <feature type="domain" description="Response regulatory" evidence="4">
        <location>
            <begin position="115"/>
            <end position="228"/>
        </location>
    </feature>
    <feature type="domain" description="OmpR/PhoB-type" evidence="6">
        <location>
            <begin position="239"/>
            <end position="340"/>
        </location>
    </feature>
    <feature type="DNA-binding region" description="OmpR/PhoB-type" evidence="3">
        <location>
            <begin position="239"/>
            <end position="340"/>
        </location>
    </feature>
    <feature type="modified residue" description="4-aspartylphosphate" evidence="2">
        <location>
            <position position="164"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00169"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU01091"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="PROSITE" id="PS50110"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="PROSITE" id="PS50963"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="PROSITE" id="PS51755"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="ABX38370.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="342" mass="37690" checksum="EA759FAB239CB1C5" modified="2008-01-15" version="1">MQIQIARRHGDGGNSCRCGFGLRRVAARAIHPWSRCKANSSPTRSYGIAAVTSYSGICFACRPIAAAQGNSLRSFDGISAREMWKNDGDEHSPRRDPKMASIIAQPLPFQPSTSLILVAEDEPEIADILCAYLARSDLRTVHAADGQQALELHHHLKPDLVLLDVQMPRLDGWQVLSEIRRRGDTPVIMLTALNQDVDKLIGLRIGADDYVGKPFNAAEVVARVQAVLRRCGQGRLRDTKLLQAGPFRVDLDSREVSVQVQGATHVPELTVTEFNLLASLVRSPRRVFSRAELLLSCLPEGHTLERTVDSHISKLRKKLEGLGLQGMPDSVRSVGYRLGMDP</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="72" xmlns="http://uniprot.org/uniprot">
    <accession>A9BXY5</accession>
    <name>A9BXY5_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="5 6">dTDP-4-dehydrorhamnose reductase</fullName>
            <ecNumber evidence="4 6">1.1.1.133</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="8" type="ordered locus">Daci_1276</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="9" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="6">Catalyzes the reduction of dTDP-6-deoxy-L-lyxo-4-hexulose to yield dTDP-L-rhamnose.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1 6">
            <text>dTDP-beta-L-rhamnose + NADP(+) = dTDP-4-dehydro-beta-L-rhamnose + H(+) + NADPH</text>
            <dbReference type="Rhea" id="RHEA:21796"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:57510"/>
            <dbReference type="ChEBI" id="CHEBI:57783"/>
            <dbReference type="ChEBI" id="CHEBI:58349"/>
            <dbReference type="ChEBI" id="CHEBI:62830"/>
            <dbReference type="EC" id="1.1.1.133"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="6">
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </cofactor>
        <text evidence="6">Binds 1 Mg(2+) ion per monomer.</text>
    </comment>
    <comment type="pathway">
        <text evidence="2 6">Carbohydrate biosynthesis; dTDP-L-rhamnose biosynthesis.</text>
    </comment>
    <comment type="similarity">
        <text evidence="3 6">Belongs to the dTDP-4-dehydrorhamnose reductase family.</text>
    </comment>
    <dbReference type="EC" id="1.1.1.133" evidence="4 6"/>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX33920.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012203206.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_1276"/>
    <dbReference type="PRIDE" id="A9BXY5"/>
    <dbReference type="EnsemblBacteria" id="ABX33920">
        <property type="protein sequence ID" value="ABX33920"/>
        <property type="gene ID" value="Daci_1276"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_1276"/>
    <dbReference type="eggNOG" id="COG1091">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_045518_1_0_4"/>
    <dbReference type="OMA" id="AGETTWH"/>
    <dbReference type="UniPathway" id="UPA00124"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008831">
        <property type="term" value="F:dTDP-4-dehydrorhamnose reductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0019305">
        <property type="term" value="P:dTDP-rhamnose biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniPathway"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005913">
        <property type="entry name" value="dTDP_dehydrorham_reduct"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036291">
        <property type="entry name" value="NAD(P)-bd_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029903">
        <property type="entry name" value="RmlD-like-bd"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10491">
        <property type="entry name" value="PTHR10491"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04321">
        <property type="entry name" value="RmlD_sub_bind"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51735">
        <property type="entry name" value="SSF51735"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01214">
        <property type="entry name" value="rmlD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="6" id="KW-0521">NADP</keyword>
    <keyword evidence="6 8" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="RmlD_sub_bind" evidence="7">
        <location>
            <begin position="1"/>
            <end position="299"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00000079"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00004781"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00010944"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00012929"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00017099"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="RuleBase" id="RU364082"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="Pfam" id="PF04321"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="ABX33920.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="300" mass="32663" checksum="81FD03B6527F73AF" modified="2008-01-15" version="1">MKLLLLGRNGQVGWELQRSLAPLGELIALDRQGDAGGQGLCGDLSRLDELARTVRALRPDVIVNAAAHTAVDKAESEPDQARLLNALAPQVLAREAAQIGALLVHYSTDYVFDGSGSAARTETEATAPLSVYGSSKLEGEQLIQASGCRHLIFRTSWVYAARGGNFAKTMLRLAQEREALSVIDDQWGAPTGADLIADVTAHAIRQLQRQPGDQGLYHLVAGGETTWHAYADHVIAKARELAPEHPWMVQRIAAVPTSAFPTPAQRPHNSRLNTERLQQTFGLRLPHWQAGVDRMLQEII</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="44" xmlns="http://uniprot.org/uniprot">
    <accession>A9BY37</accession>
    <name>A9BY37_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Daci_1328</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="2" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX33972.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012203258.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_1328"/>
    <dbReference type="PRIDE" id="A9BY37"/>
    <dbReference type="EnsemblBacteria" id="ABX33972">
        <property type="protein sequence ID" value="ABX33972"/>
        <property type="gene ID" value="Daci_1328"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_1328"/>
    <dbReference type="eggNOG" id="ENOG502ZAKV">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_075043_0_0_4"/>
    <dbReference type="OMA" id="CGMAEVI"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ABX33972.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="308" mass="32489" checksum="B83E282F265F9FB2" modified="2008-01-15" version="1">MAAKIMRKMALLALVETVVGTAVVPLAANAMLVSDVTLTPIEGDVVERNNIRPFFGSSGSTLVTEYQKVAFSVEFAGVAAAGERPGVTDLLRACAASASTETGVKTVFSPVTDGIQSVTIYGNVDGTLYKMHGARGEVEFSTDAKAIPKWKFEFTGSFVPAVDEALPAVDYSDFVAPLGVNKTNTQLTLDGLAVACSAFSFKCGNQVVKRDLMNVDTVEITDRKSTGSVTFENTSVATKDWIGLARASAIVPVTLKHGPGATNTVSFKSARAQIGKPTYSDSDGVQMITIPLSFIPSDAGNDEWSIEI</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="64" xmlns="http://uniprot.org/uniprot">
    <accession>A9BY52</accession>
    <name>A9BY52_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Enoyl-CoA hydratase/isomerase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_1343</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the enoyl-CoA hydratase/isomerase family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX33987.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012203273.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_1343"/>
    <dbReference type="PRIDE" id="A9BY52"/>
    <dbReference type="EnsemblBacteria" id="ABX33987">
        <property type="protein sequence ID" value="ABX33987"/>
        <property type="gene ID" value="Daci_1343"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_1343"/>
    <dbReference type="eggNOG" id="COG1024">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_009834_7_2_4"/>
    <dbReference type="OMA" id="TQLGLCP"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016853">
        <property type="term" value="F:isomerase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.12.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029045">
        <property type="entry name" value="ClpP/crotonase-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001753">
        <property type="entry name" value="Enoyl-CoA_hydra/iso"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014748">
        <property type="entry name" value="Enoyl-CoA_hydra_C"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00378">
        <property type="entry name" value="ECH_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52096">
        <property type="entry name" value="SSF52096"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2" id="KW-0413">Isomerase</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00005254"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX33987.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="264" mass="27911" checksum="A8AD90DEDDD18EDB" modified="2008-01-15" version="1">MSETTQDILVHTEAGVCTITFNRADKKNSITEAMYASMADALAQAGEDAAVRCVVFQGDMAIFSAGNDIADFLKQSAGGAARPEGEQRPVWRFLHNIAAFPKPVIAAVCGPAVGIGTTLLLHCDLVYAGDNAAFSLPFVNLGLCPEAASSLLLPQMLGYHRAAEALLLGEPFLAEAALEVGLVNRVVPPSECNALVQAQARKLAAKPLSALIETKRLMKAGQSGLVRERMAEEGASFGKLMGGPAAKEAFTAFMEKRKPDFSQC</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="46" xmlns="http://uniprot.org/uniprot">
    <accession>A9BY91</accession>
    <name>A9BY91_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Daci_1586</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="2" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX34230.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012203515.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_1586"/>
    <dbReference type="PRIDE" id="A9BY91"/>
    <dbReference type="EnsemblBacteria" id="ABX34230">
        <property type="protein sequence ID" value="ABX34230"/>
        <property type="gene ID" value="Daci_1586"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_1586"/>
    <dbReference type="eggNOG" id="ENOG502ZAGN">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_117549_0_0_4"/>
    <dbReference type="OMA" id="GFIEMAR"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR046239">
        <property type="entry name" value="DUF6272"/>
    </dbReference>
    <dbReference type="Pfam" id="PF19788">
        <property type="entry name" value="DUF6272"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ABX34230.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="210" mass="22112" checksum="35B24E3D97D81772" modified="2008-01-15" version="1">MSPSEFAHLRAQAEHNGLLLYYAGTFNPNVIQAAADTLKCRLASEDGSSSAKRKLFSTFIEMAQNVLHYAAPLPASDAGASQALGEPVAQGAIGVGRIDAPAGAPDAEADQAQARFWIACSNAVRREHVPRLAAKLDAVRAMSHPEIKAAYKAQLHNTDHGASDDISRGAGLGWLTIARDASAPLQYHIATGEDAADTAPHAVFHVKALI</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="49" xmlns="http://uniprot.org/uniprot">
    <accession>A9BYE4</accession>
    <name>A9BYE4_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Daci_1640</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="2" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX34283.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012203568.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_1640"/>
    <dbReference type="PRIDE" id="A9BYE4"/>
    <dbReference type="EnsemblBacteria" id="ABX34283">
        <property type="protein sequence ID" value="ABX34283"/>
        <property type="gene ID" value="Daci_1640"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_1640"/>
    <dbReference type="eggNOG" id="ENOG5032WS8">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_1302985_0_0_4"/>
    <dbReference type="OMA" id="DITTMCS"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR032494">
        <property type="entry name" value="Phage_TTP_12"/>
    </dbReference>
    <dbReference type="Pfam" id="PF16461">
        <property type="entry name" value="Phage_TTP_12"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ABX34283.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="217" mass="22273" checksum="A60054623B978598" modified="2008-01-15" version="1">MSAGKRFKFQGTTLQVSTGVGAAKTITGITQENPAVIAAAAHGFVLGDVARIAAVVGMTEINGQLAVVDNPEAGDFEAANIDASGYSAYANGGTASPLTYTNFCELTGANQQDGQADEIEATSICSTAKEFEVGLGDSGTLTLDYNFAPNTGVQASFRAAKKSGEEVAIRIKLPKDGGTIVMIGYVQQSSFQGSNGGLWTGSSTIRLTGEIFVLEAA</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="70" xmlns="http://uniprot.org/uniprot">
    <accession>A9BYY6</accession>
    <name>A9BYY6_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Polyprenyl synthetase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Daci_2241</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="4" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="2">Belongs to the FPP/GGPP synthase family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX34881.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012204164.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_2241"/>
    <dbReference type="PRIDE" id="A9BYY6"/>
    <dbReference type="EnsemblBacteria" id="ABX34881">
        <property type="protein sequence ID" value="ABX34881"/>
        <property type="gene ID" value="Daci_2241"/>
    </dbReference>
    <dbReference type="GeneID" id="60686635"/>
    <dbReference type="KEGG" id="dac:Daci_2241"/>
    <dbReference type="eggNOG" id="COG0142">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_014015_0_1_4"/>
    <dbReference type="OMA" id="CEGQALD"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016740">
        <property type="term" value="F:transferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008299">
        <property type="term" value="P:isoprenoid biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd00685">
        <property type="entry name" value="Trans_IPPS_HT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.600.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008949">
        <property type="entry name" value="Isoprenoid_synthase_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000092">
        <property type="entry name" value="Polyprenyl_synt"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR033749">
        <property type="entry name" value="Polyprenyl_synt_CS"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00348">
        <property type="entry name" value="polyprenyl_synt"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48576">
        <property type="entry name" value="SSF48576"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00723">
        <property type="entry name" value="POLYPRENYL_SYNTHASE_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00444">
        <property type="entry name" value="POLYPRENYL_SYNTHASE_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="1" id="KW-0460">Magnesium</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0808">Transferase</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022842"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="RuleBase" id="RU004466"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ABX34881.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="316" mass="32794" checksum="9E5F465B50C8515D" modified="2008-01-15" version="1">MSAVMTCASDVSQPAGPGALDFPCWMTDRLARTESALSQWVGVDAPAGLGEAMRYAVLDGGKRLRPLLVWAAAEAVDGLQPAAVRAGCAVELIHAYSLVHDDMPCMDNDVLRRGKPTVHVQFGEASALLAGDALQALAFELLVPEPDQAGSMPDALQARLCRLLGRAAGAQGMAGGQAIDLASVGLQLSEAQLREMHRLKTGALLHASVLMGAACKEGVDAQAWQALSDYGQALGVAFQVVDDILDVVADSATLGKTAGKDAANDKPTYVSLLGLDQARAHADELCALAHAALARSGLPDTRALAALADMVVSRTH</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="72" xmlns="http://uniprot.org/uniprot">
    <accession>A9BZ14</accession>
    <name>A9BZ14_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Amidohydrolase</fullName>
            <ecNumber evidence="3">3.5.1.32</ecNumber>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Daci_2476</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="4" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EC" id="3.5.1.32" evidence="3"/>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX35114.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012204395.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="PRIDE" id="A9BZ14"/>
    <dbReference type="EnsemblBacteria" id="ABX35114">
        <property type="protein sequence ID" value="ABX35114"/>
        <property type="gene ID" value="Daci_2476"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_2476"/>
    <dbReference type="eggNOG" id="COG1473">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_023257_1_1_4"/>
    <dbReference type="OMA" id="NKGMMHA"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0047980">
        <property type="term" value="F:hippurate hydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017439">
        <property type="entry name" value="Amidohydrolase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036264">
        <property type="entry name" value="Bact_exopeptidase_dim_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002933">
        <property type="entry name" value="Peptidase_M20"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011650">
        <property type="entry name" value="Peptidase_M20_dimer"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11014">
        <property type="entry name" value="PTHR11014"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07687">
        <property type="entry name" value="M20_dimer"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01546">
        <property type="entry name" value="Peptidase_M20"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF005962">
        <property type="entry name" value="Pept_M20D_amidohydro"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55031">
        <property type="entry name" value="SSF55031"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01891">
        <property type="entry name" value="amidohydrolases"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1 3" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="M20_dimer" evidence="2">
        <location>
            <begin position="190"/>
            <end position="287"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF07687"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ABX35114.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="398" mass="42917" checksum="1A09C3644BC826AF" modified="2008-01-15" version="1">MRSTPDITPHLGSLLKFRHDLHANPELRYEEHRTGDKVAAYLMALGLQVHRGLGRTGVVASIHGRGRSAANPGRSIGIRADMDALPVTELNAFGHASQNPGCMHACGHDGHTTMLLGAATLLAQQPDFDGSVHLIFQPAEEGGAGAKAMMEDGLFDRFPCEAVFALHNWPALPAGEMAVRVGPIMASTLRFEIRVHGKGGHAAMPHTTLDPIPVACAIVGQLQTLVSRSTDPLDSAVLTVGKITSGTVENIIPDEASIFGTVRALRTETQQMFIEGMQRISEHVAAAHLCRAEFILKPGYPNTTNHAHEARFMAEVMREAVGEDRTHADILPAMTAEDFGFMLEAVPGAYGWIGNGPATGEPGVGLHNPGYDFNDDNLGRGARFWDLLARRWLEQSRT</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="82" xmlns="http://uniprot.org/uniprot">
    <accession>A9BZ85</accession>
    <name>A9BZ85_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Transcriptional regulator, LysR family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Daci_2547</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="4" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the LysR transcriptional regulatory family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX35185.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_2547"/>
    <dbReference type="PRIDE" id="A9BZ85"/>
    <dbReference type="EnsemblBacteria" id="ABX35185">
        <property type="protein sequence ID" value="ABX35185"/>
        <property type="gene ID" value="Daci_2547"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_2547"/>
    <dbReference type="eggNOG" id="COG0583">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_039613_6_0_4"/>
    <dbReference type="OMA" id="CRRDHEL"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003700">
        <property type="term" value="F:DNA-binding transcription factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005119">
        <property type="entry name" value="LysR_subst-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000847">
        <property type="entry name" value="Tscrpt_reg_HTH_LysR"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036390">
        <property type="entry name" value="WH_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00126">
        <property type="entry name" value="HTH_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03466">
        <property type="entry name" value="LysR_substrate"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00039">
        <property type="entry name" value="HTHLYSR"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46785">
        <property type="entry name" value="SSF46785"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50931">
        <property type="entry name" value="HTH_LYSR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HTH lysR-type" evidence="2">
        <location>
            <begin position="16"/>
            <end position="73"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00009437"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS50931"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ABX35185.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="310" mass="34114" checksum="C281EBD60B10FAC8" modified="2008-01-15" version="1">MNCNFWKDCCVQRIKFDMGELIAFVTTAEKASFRLAAEALFLSPPALSRRVERLESVLGARLLERSTRRVELTEVGHEFLQEARRALAGLDEAVQRVDDQLKLRRGRVTVACVPSVATNLLPPVLKTFAVEQPDVQVHVIDESAQQVVEAVLRGDADFGLSFTGSQEPSLRFEALTRERYVLAMPRSHAWAGRSQVEWAELAGKRLVSVSHKSGNRLLLDQVMAGLPEQPVAWHECNHVTGALALVEAGLGLAAVPQLALRQDHAQVCGVPLTEPDVWRTLGLLQRRDRVLGPVAQALRECLVQVQGAGG</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="76" xmlns="http://uniprot.org/uniprot">
    <accession>A9BZG6</accession>
    <name>A9BZG6_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="8">Monosaccharide-transporting ATPase</fullName>
            <ecNumber evidence="8">3.6.3.17</ecNumber>
        </submittedName>
    </protein>
    <gene>
        <name evidence="8" type="ordered locus">Daci_2928</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="9" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <dbReference type="EC" id="3.6.3.17" evidence="8"/>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX35566.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012204776.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_2928"/>
    <dbReference type="PRIDE" id="A9BZG6"/>
    <dbReference type="EnsemblBacteria" id="ABX35566">
        <property type="protein sequence ID" value="ABX35566"/>
        <property type="gene ID" value="Daci_2928"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_2928"/>
    <dbReference type="eggNOG" id="COG1172">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_028880_0_2_4"/>
    <dbReference type="OMA" id="RDQSFLM"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016787">
        <property type="term" value="F:hydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0022857">
        <property type="term" value="F:transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001851">
        <property type="entry name" value="ABC_transp_permease"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02653">
        <property type="entry name" value="BPD_transp_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="8" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="5 7" id="KW-0472">Membrane</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 7" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="4 7" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="36"/>
            <end position="56"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="68"/>
            <end position="89"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="96"/>
            <end position="115"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="135"/>
            <end position="154"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="161"/>
            <end position="179"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="191"/>
            <end position="211"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="247"/>
            <end position="268"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="304"/>
            <end position="322"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="6">
        <location>
            <begin position="1"/>
            <end position="28"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="6">
        <location>
            <begin position="1"/>
            <end position="24"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="ABX35566.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="351" mass="36859" checksum="7138EDE3C80F2E7E" modified="2008-01-15" version="1">MSNSQTVSQAQTQTQTQTQAQARPARKQRARWPPELSIFLVLLGIALFFEAAGWLTVGQSFLLNAERLQIIVLQMAVVGIIAVGVNLVIITSGIDLSSGSVVAAAAVVSASLAQVSDFPRAVFPQLTDLPVVWPVLAGMCVGLMVGLINGSLIAFTGIPPFIATLGTMVAARGFAKWFTNGTPVSMLTEEFAALGSGAHPVLIFLVLAAVFHTVLRHTRFGKFTYAIGANRQAAVVSGINVRRHLVWVYMIAGVLSGIAGTVTAARAISGQSGMGVMYELDAIAAVVIGGTSLAGGVGRITGTVIGVLILGVMTSGFTFIRIDAYYQEMVKGAIIVAAVVADQYRNKKARR</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="64" xmlns="http://uniprot.org/uniprot">
    <accession>A9BZN2</accession>
    <name>A9BZN2_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="9">Protein adenylyltransferase SelO</fullName>
            <ecNumber evidence="9">2.7.7.n1</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="9" type="primary">selO</name>
        <name evidence="11" type="ordered locus">Daci_3302</name>
    </gene>
    <organism evidence="11 12">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="11 12" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="12">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="12" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="12">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="9">Catalyzes the transfer of adenosine 5'-monophosphate (AMP) to Ser, Thr or Tyr residues of target proteins (AMPylation).</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="9">
            <text>ATP + L-seryl-[protein] = 3-O-(5'-adenylyl)-L-seryl-[protein] + diphosphate</text>
            <dbReference type="Rhea" id="RHEA:58120"/>
            <dbReference type="Rhea" id="RHEA-COMP:9863"/>
            <dbReference type="Rhea" id="RHEA-COMP:15073"/>
            <dbReference type="ChEBI" id="CHEBI:29999"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:33019"/>
            <dbReference type="ChEBI" id="CHEBI:142516"/>
        </reaction>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="9">
            <text>ATP + L-threonyl-[protein] = 3-O-(5'-adenylyl)-L-threonyl-[protein] + diphosphate</text>
            <dbReference type="Rhea" id="RHEA:54292"/>
            <dbReference type="Rhea" id="RHEA-COMP:11060"/>
            <dbReference type="Rhea" id="RHEA-COMP:13847"/>
            <dbReference type="ChEBI" id="CHEBI:30013"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:33019"/>
            <dbReference type="ChEBI" id="CHEBI:138113"/>
            <dbReference type="EC" id="2.7.7.n1"/>
        </reaction>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="9">
            <text>ATP + L-tyrosyl-[protein] = diphosphate + O-(5'-adenylyl)-L-tyrosyl-[protein]</text>
            <dbReference type="Rhea" id="RHEA:54288"/>
            <dbReference type="Rhea" id="RHEA-COMP:10136"/>
            <dbReference type="Rhea" id="RHEA-COMP:13846"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:33019"/>
            <dbReference type="ChEBI" id="CHEBI:46858"/>
            <dbReference type="ChEBI" id="CHEBI:83624"/>
            <dbReference type="EC" id="2.7.7.n1"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="1 9">
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </cofactor>
    </comment>
    <comment type="similarity">
        <text evidence="2 9">Belongs to the SELO family.</text>
    </comment>
    <dbReference type="EC" id="2.7.7.n1" evidence="9"/>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX35940.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012205140.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_3302"/>
    <dbReference type="PRIDE" id="A9BZN2"/>
    <dbReference type="EnsemblBacteria" id="ABX35940">
        <property type="protein sequence ID" value="ABX35940"/>
        <property type="gene ID" value="Daci_3302"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_3302"/>
    <dbReference type="eggNOG" id="COG0397">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_010245_4_0_4"/>
    <dbReference type="OMA" id="YGPYGWL"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000287">
        <property type="term" value="F:magnesium ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016779">
        <property type="term" value="F:nucleotidyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00692">
        <property type="entry name" value="SelO"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003846">
        <property type="entry name" value="SelO"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR32057">
        <property type="entry name" value="PTHR32057"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02696">
        <property type="entry name" value="SelO"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="7 9" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="8 9" id="KW-0460">Magnesium</keyword>
    <keyword evidence="5 9" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="6 9" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="4 9" id="KW-0548">Nucleotidyltransferase</keyword>
    <keyword evidence="12" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 9" id="KW-0808">Transferase</keyword>
    <feature type="region of interest" description="Disordered" evidence="10">
        <location>
            <begin position="1"/>
            <end position="22"/>
        </location>
    </feature>
    <feature type="active site" description="Proton acceptor" evidence="9">
        <location>
            <position position="265"/>
        </location>
    </feature>
    <feature type="binding site" evidence="9">
        <location>
            <begin position="103"/>
            <end position="106"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="9">
        <location>
            <position position="122"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="9">
        <location>
            <begin position="134"/>
            <end position="135"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="9">
        <location>
            <position position="185"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="9">
        <location>
            <position position="192"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="9">
        <location>
            <position position="266"/>
        </location>
        <ligand>
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="9">
        <location>
            <position position="275"/>
        </location>
        <ligand>
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001946"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00009747"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022695"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00022842"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="EMBL" id="ABX35940.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="510" mass="55106" checksum="A855789F33609C61" modified="2008-01-15" version="1">MNLHAAAEGQAPATSPRPPISWQDGFAALGPDFFTHLRPTPLPEPHWIATSTGTAELLGLDPQWLASDEALQALTGNAVLPGSHPLASVYSGHQFGVWAGQLGDGRAILLGETASGHEIQLKGAGRTPYSRMGDGRAVLRSSIREFLCSEAMHALGIPTTRALSLTGSPAPIRREEIETAAVVARVAPSFIRFGHFEHFAARDQIAPLRQLADYVIDHYYPECRTAEALAGNAYANFLQAVSERTARLLAHWQAVGFCHGVMNTDNMSILGLTIDYGPFQFLDAFNPGHICNHSDTQGRYAFNRQPQVAYWNLYCLGQALLPLIGEEELTIAALESYKQVFPQAYGALMLRKLGLPEDAPGTPPAEGRFAALVNPLLQLMADNAVDYTIFFSRLTDAVAAGAGAGTDLEPVRDLVLDREAFDRWAALYARHLAGTDAAAAAALMQESNPRFVLRNHLGEMAIRAAKAGDFAPVRQLLAVLQTPFAPHAEHAEWAGFPPDWASSIEISCSS</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="97" xmlns="http://uniprot.org/uniprot">
    <accession>A9BZZ1</accession>
    <name>A9BZZ1_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="8">Electron transport complex, RnfABCDGE type, B subunit</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="8" type="ordered locus">Daci_3619</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="9" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX36253.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012205453.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_3619"/>
    <dbReference type="PRIDE" id="A9BZZ1"/>
    <dbReference type="EnsemblBacteria" id="ABX36253">
        <property type="protein sequence ID" value="ABX36253"/>
        <property type="gene ID" value="Daci_3619"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_3619"/>
    <dbReference type="eggNOG" id="COG2878">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_063448_0_0_4"/>
    <dbReference type="OMA" id="IDEAWCI"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051539">
        <property type="term" value="F:4 iron, 4 sulfur cluster binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009055">
        <property type="term" value="F:electron transfer activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007202">
        <property type="entry name" value="4Fe-4S_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017896">
        <property type="entry name" value="4Fe4S_Fe-S-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017900">
        <property type="entry name" value="4Fe4S_Fe_S_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010207">
        <property type="entry name" value="Elect_transpt_cplx_RnfB/RsxB"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016463">
        <property type="entry name" value="RnfB/RsxB_Proteobac"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR42859:SF3">
        <property type="entry name" value="PTHR42859:SF3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04060">
        <property type="entry name" value="FeS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01944">
        <property type="entry name" value="rnfB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51656">
        <property type="entry name" value="4FE4S"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00198">
        <property type="entry name" value="4FE4S_FER_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51379">
        <property type="entry name" value="4FE4S_FER_2"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0004">4Fe-4S</keyword>
    <keyword evidence="3" id="KW-0408">Iron</keyword>
    <keyword evidence="4" id="KW-0411">Iron-sulfur</keyword>
    <keyword evidence="2" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="4Fe-4S" evidence="7">
        <location>
            <begin position="8"/>
            <end position="67"/>
        </location>
    </feature>
    <feature type="domain" description="4Fe-4S ferredoxin-type" evidence="6">
        <location>
            <begin position="83"/>
            <end position="112"/>
        </location>
    </feature>
    <feature type="domain" description="4Fe-4S ferredoxin-type" evidence="6">
        <location>
            <begin position="113"/>
            <end position="142"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="5">
        <location>
            <begin position="169"/>
            <end position="210"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022485"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023004"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023014"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="PROSITE" id="PS51379"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="PROSITE" id="PS51656"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="ABX36253.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="238" mass="24760" checksum="9B01695E110048FB" modified="2008-01-15" version="1">MSAFAILARDDLAARIDAALPQTQCTRCGYPDCASYAQAVASGEAGINQCPPGGAAGVERLAALTGRPAAPLSAEHGTEAPRTVAVIDEAWCIGCTLCIKACPTDAILGANKFMHTVIAAHCTGCELCIPVCPVDCIELHNASGPATGWSAWSPQQAEHARQRYVLRREREQERERLGAARAQTPLALGEQQMADDASPSTPCPAPPLATESKQATIAAILARARAQRAGGASTPKGH</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="97" xmlns="http://uniprot.org/uniprot">
    <accession>A9C064</accession>
    <name>A9C064_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="10">Cysteine desulfurase IscS</fullName>
            <ecNumber evidence="10">2.8.1.7</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="10" type="primary">iscS</name>
        <name evidence="13" type="ordered locus">Daci_3999</name>
    </gene>
    <organism evidence="13 14">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="13 14" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="14">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="14" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="14">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="10">Master enzyme that delivers sulfur to a number of partners involved in Fe-S cluster assembly, tRNA modification or cofactor biosynthesis. Catalyzes the removal of elemental sulfur atoms from cysteine to produce alanine. Functions as a sulfur delivery protein for Fe-S cluster synthesis onto IscU, an Fe-S scaffold assembly protein, as well as other S acceptor proteins.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1 10">
            <text>[sulfur carrier]-H + L-cysteine = [sulfur carrier]-SH + L-alanine</text>
            <dbReference type="Rhea" id="RHEA:43892"/>
            <dbReference type="Rhea" id="RHEA-COMP:14737"/>
            <dbReference type="Rhea" id="RHEA-COMP:14739"/>
            <dbReference type="ChEBI" id="CHEBI:29917"/>
            <dbReference type="ChEBI" id="CHEBI:35235"/>
            <dbReference type="ChEBI" id="CHEBI:57972"/>
            <dbReference type="ChEBI" id="CHEBI:64428"/>
            <dbReference type="EC" id="2.8.1.7"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="2 10 11">
            <name>pyridoxal 5'-phosphate</name>
            <dbReference type="ChEBI" id="CHEBI:597326"/>
        </cofactor>
    </comment>
    <comment type="pathway">
        <text evidence="10">Cofactor biosynthesis; iron-sulfur cluster biosynthesis.</text>
    </comment>
    <comment type="subunit">
        <text evidence="10">Homodimer. Forms a heterotetramer with IscU, interacts with other sulfur acceptors.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="10">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="3 10">Belongs to the class-V pyridoxal-phosphate-dependent aminotransferase family. NifS/IscS subfamily.</text>
    </comment>
    <dbReference type="EC" id="2.8.1.7" evidence="10"/>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX36630.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012205824.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_3999"/>
    <dbReference type="PRIDE" id="A9C064"/>
    <dbReference type="EnsemblBacteria" id="ABX36630">
        <property type="protein sequence ID" value="ABX36630"/>
        <property type="gene ID" value="Daci_3999"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_3999"/>
    <dbReference type="eggNOG" id="COG1104">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_003433_0_2_4"/>
    <dbReference type="OMA" id="KGLYWAR"/>
    <dbReference type="UniPathway" id="UPA00266"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051537">
        <property type="term" value="F:2 iron, 2 sulfur cluster binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0031071">
        <property type="term" value="F:cysteine desulfurase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030170">
        <property type="term" value="F:pyridoxal phosphate binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008483">
        <property type="term" value="F:transaminase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0044571">
        <property type="term" value="P:[2Fe-2S] cluster assembly"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.640.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.1150.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00331">
        <property type="entry name" value="Cys_desulf_IscS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000192">
        <property type="entry name" value="Aminotrans_V_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020578">
        <property type="entry name" value="Aminotrans_V_PyrdxlP_BS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010240">
        <property type="entry name" value="Cys_deSase_IscS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016454">
        <property type="entry name" value="Cysteine_dSase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015424">
        <property type="entry name" value="PyrdxlP-dep_Trfase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015421">
        <property type="entry name" value="PyrdxlP-dep_Trfase_major"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015422">
        <property type="entry name" value="PyrdxlP-dep_Trfase_small"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11601:SF34">
        <property type="entry name" value="PTHR11601:SF34"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00266">
        <property type="entry name" value="Aminotran_5"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF005572">
        <property type="entry name" value="NifS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53383">
        <property type="entry name" value="SSF53383"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR02006">
        <property type="entry name" value="IscS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00595">
        <property type="entry name" value="AA_TRANSFER_CLASS_5"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5 10" id="KW-0001">2Fe-2S</keyword>
    <keyword evidence="4" id="KW-0032">Aminotransferase</keyword>
    <keyword evidence="10" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="8 10" id="KW-0408">Iron</keyword>
    <keyword evidence="9 10" id="KW-0411">Iron-sulfur</keyword>
    <keyword evidence="6 10" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="7 10" id="KW-0663">Pyridoxal phosphate</keyword>
    <keyword evidence="14" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="10" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Aminotran_5" evidence="12">
        <location>
            <begin position="9"/>
            <end position="370"/>
        </location>
    </feature>
    <feature type="region of interest" description="Pyridoxal phosphate binding" evidence="10">
        <location>
            <begin position="77"/>
            <end position="78"/>
        </location>
    </feature>
    <feature type="region of interest" description="Pyridoxal phosphate binding" evidence="10">
        <location>
            <begin position="205"/>
            <end position="207"/>
        </location>
    </feature>
    <feature type="active site" description="Cysteine persulfide intermediate" evidence="10">
        <location>
            <position position="330"/>
        </location>
    </feature>
    <feature type="binding site" evidence="10">
        <location>
            <position position="157"/>
        </location>
        <ligand>
            <name>pyridoxal 5'-phosphate</name>
            <dbReference type="ChEBI" id="CHEBI:597326"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="10">
        <location>
            <position position="185"/>
        </location>
        <ligand>
            <name>pyridoxal 5'-phosphate</name>
            <dbReference type="ChEBI" id="CHEBI:597326"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="10">
        <location>
            <position position="245"/>
        </location>
        <ligand>
            <name>pyridoxal 5'-phosphate</name>
            <dbReference type="ChEBI" id="CHEBI:597326"/>
        </ligand>
    </feature>
    <feature type="binding site" description="via persulfide group" evidence="10">
        <location>
            <position position="330"/>
        </location>
        <ligand>
            <name>[2Fe-2S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:190135"/>
            <note>ligand shared with IscU</note>
        </ligand>
    </feature>
    <feature type="modified residue" description="N6-(pyridoxal phosphate)lysine" evidence="10">
        <location>
            <position position="208"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001357"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00001933"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00006490"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022576"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022714"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022898"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00023004"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00023014"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00331"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="RuleBase" id="RU004504"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="12">
        <source>
            <dbReference type="Pfam" id="PF00266"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="13">
        <source>
            <dbReference type="EMBL" id="ABX36630.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="14">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="406" mass="44922" checksum="43C971C5C8F1DAB4" modified="2008-01-15" version="1">MDMTPHFPIYLDYGATTPVDPRVVDAMIPWLREHFGNAASRSHAWGWEAEEAIEKARGQVADLIGADPREIVWTSGATESINLAIKGAAHFYQGKGKHLITLKTEHKAVLDTMRELERQGFEVTYMDVQPDGLLDIEAFKAALRPDTILVSVLFVNNEIGVIQDIPTIGALCREKGILFHVDAAQATGRVEIDMSKLPVDLMSMTAHKTYGPKGVGALYVRRKPRVRLEAQIHGGGHERGMRSGTLPTHQIVGMGEAFRIAKEEMAESNAKAYALQQRLLNGLKDLEQVFINGSMEHRVPQNLNMSFNFVEGESLIMGIKGLAVSSGSACTSASLEPSYVLRALGRSDELAHSSLRMTIGRFTTEEEIDYAISTIRTNVVKLRELSPLWEMFKDGIDLSTIQWAAH</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="55" xmlns="http://uniprot.org/uniprot">
    <accession>A9C078</accession>
    <name>A9C078_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ordered locus">Daci_4013</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="5" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Periplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the UPF0065 (bug) family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX36644.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_4013"/>
    <dbReference type="PRIDE" id="A9C078"/>
    <dbReference type="EnsemblBacteria" id="ABX36644">
        <property type="protein sequence ID" value="ABX36644"/>
        <property type="gene ID" value="Daci_4013"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_4013"/>
    <dbReference type="eggNOG" id="COG3181">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_045683_0_0_4"/>
    <dbReference type="OMA" id="TARYRSI"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0042597">
        <property type="term" value="C:periplasmic space"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.190.150">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005064">
        <property type="entry name" value="BUG"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR042100">
        <property type="entry name" value="Bug_dom1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR42928">
        <property type="entry name" value="PTHR42928"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03401">
        <property type="entry name" value="TctC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF017082">
        <property type="entry name" value="YflP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="3">
        <location>
            <begin position="1"/>
            <end position="25"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5002736202" evidence="3">
        <location>
            <begin position="26"/>
            <end position="328"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004418"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00006987"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="ABX36644.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="328" mass="35306" checksum="C8B09B4225DB4280" modified="2008-01-15" version="1">MMRFLFQRVWLTGAGLLLSAGLACAQSPSSRPVSLMVPYPAGGPSDAIARIFSVPLSKALGQQVIVENLGGVSGAMAAQKVLAAPPDGHYVFQGSPNEVILSPLANAAVRLKAEDFRLVHPVAEAVMVFVARKDLEAGNVDELIALARKSASRPLSYGSVGIGSLYHLILEKVQQDAGIQLMHAPYKGNAPLLQDIGSGQVDFAVLVYSAAMGALAEQGRLKILGQLGEQRSELLKNVPTVREGRELKNFAYKTWTSFLVRKDTPQEVVQRLHQAIGAMLKDPGVREQLALQTQLAAAPMSLAEAAQFYEAETARYRSIARSIRLQPQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="52" xmlns="http://uniprot.org/uniprot">
    <accession>A9C0I7</accession>
    <name>A9C0I7_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ordered locus">Daci_4430</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="5" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Periplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the UPF0065 (bug) family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX37060.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012206232.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_4430"/>
    <dbReference type="PRIDE" id="A9C0I7"/>
    <dbReference type="EnsemblBacteria" id="ABX37060">
        <property type="protein sequence ID" value="ABX37060"/>
        <property type="gene ID" value="Daci_4430"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_4430"/>
    <dbReference type="eggNOG" id="COG3181">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_045683_0_1_4"/>
    <dbReference type="OMA" id="TLVMAQT"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0042597">
        <property type="term" value="C:periplasmic space"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.190.150">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005064">
        <property type="entry name" value="BUG"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR042100">
        <property type="entry name" value="Bug_dom1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006311">
        <property type="entry name" value="TAT_signal"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR42928">
        <property type="entry name" value="PTHR42928"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03401">
        <property type="entry name" value="TctC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF017082">
        <property type="entry name" value="YflP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51318">
        <property type="entry name" value="TAT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="3">
        <location>
            <begin position="1"/>
            <end position="27"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5002733230" evidence="3">
        <location>
            <begin position="28"/>
            <end position="328"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004418"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00006987"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="ABX37060.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="328" mass="34349" checksum="7504FFD08EBFA3C2" modified="2008-01-15" version="1">MTTPTRRRLALAGLLALTAAAMAPAHAQGTYPQRPIRFIVPFPAGGGTDNLTRLVGTKLTEAHGWAIVVENKPGAGGNLALDQVAKAPADGLTLVMAQTDNVVLNPLLYSKLTYNPDKDLRAVALVAAGPAVLVVNADSPYKSLDDIVQAAKKDPGRLSFATPGTGTISHLISEAWQKSSNVKFTHVPFRGMAQAMPDLLGGRIDMYMGSVPTLLSHIQSGKVRAIGVTTASRSKLLPDVPTYTESGIKGVELASVWGVMAPAGTSDAIVKQLNEAINKVVNAPDTARKIADSGAELITGTPQDMARLYASDRARLAPIVKSSGTTLD</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="73" xmlns="http://uniprot.org/uniprot">
    <accession>A9C0M8</accession>
    <name>A9C0M8_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Short-chain dehydrogenase/reductase SDR</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_4471</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the short-chain dehydrogenases/reductases (SDR) family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX37101.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012206273.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_4471"/>
    <dbReference type="PRIDE" id="A9C0M8"/>
    <dbReference type="EnsemblBacteria" id="ABX37101">
        <property type="protein sequence ID" value="ABX37101"/>
        <property type="gene ID" value="Daci_4471"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_4471"/>
    <dbReference type="eggNOG" id="COG1028">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_010194_1_2_4"/>
    <dbReference type="OMA" id="ICPGIIE"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016491">
        <property type="term" value="F:oxidoreductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036291">
        <property type="entry name" value="NAD(P)-bd_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020904">
        <property type="entry name" value="Sc_DH/Rdtase_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002347">
        <property type="entry name" value="SDR_fam"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00106">
        <property type="entry name" value="adh_short"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00081">
        <property type="entry name" value="GDHRDH"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00080">
        <property type="entry name" value="SDRFAMILY"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51735">
        <property type="entry name" value="SSF51735"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00061">
        <property type="entry name" value="ADH_SHORT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="RuleBase" id="RU000363"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX37101.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="270" mass="27759" checksum="ECF272B4278EF1DA" modified="2008-01-15" version="1">MTMTSQPLEGRHALVTGGARGIGLACARALLARGARVTLLGRDSAALEAAVRELGGTAQAAQEAQKVQSVQADIADEASVRQAFAQAEAAFGPVQVLVNNAGQASSQKFERTDAALWQGMLAVNLTGTFHCMQAALPGMLAARWGRIINVASTAGLIGYAYVSAYCAAKHGVIGLTRSLALETAGKGVTVNAVCPGYTETDIVRGAVANIVDKTGMTADEARARLAERNPQGRLVQPEEVAETVAWLSLPASASVNGQSIAVDGGEVMTG</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="70" xmlns="http://uniprot.org/uniprot">
    <accession>A9C0S5</accession>
    <name>A9C0S5_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="5">Probable RNA 2'-phosphotransferase</fullName>
            <ecNumber evidence="5">2.7.1.-</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="5" type="primary">kptA</name>
        <name evidence="6" type="ordered locus">Daci_5760</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="7" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="4 5">Removes the 2'-phosphate from RNA via an intermediate in which the phosphate is ADP-ribosylated by NAD followed by a presumed transesterification to release the RNA and generate ADP-ribose 1''-2''-cyclic phosphate (APPR&gt;P). May function as an ADP-ribosylase.</text>
    </comment>
    <comment type="similarity">
        <text evidence="1 5">Belongs to the KptA/TPT1 family.</text>
    </comment>
    <dbReference type="EC" id="2.7.1.-" evidence="5"/>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX38388.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_5760"/>
    <dbReference type="PRIDE" id="A9C0S5"/>
    <dbReference type="EnsemblBacteria" id="ABX38388">
        <property type="protein sequence ID" value="ABX38388"/>
        <property type="gene ID" value="Daci_5760"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_5760"/>
    <dbReference type="eggNOG" id="COG0546">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="eggNOG" id="COG1859">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_699660_0_0_4"/>
    <dbReference type="BRENDA" id="2.7.1.160">
        <property type="organism ID" value="1586"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016746">
        <property type="term" value="F:acyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003950">
        <property type="term" value="F:NAD+ ADP-ribosyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016772">
        <property type="term" value="F:transferase activity, transferring phosphorus-containing groups"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006388">
        <property type="term" value="P:tRNA splicing, via endonucleolytic cleavage and ligation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.970">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.20.170.30">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00299">
        <property type="entry name" value="KptA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036412">
        <property type="entry name" value="HAD-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002745">
        <property type="entry name" value="Ptrans_KptA/Tpt1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR042081">
        <property type="entry name" value="RNA_2'-PTrans_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR022928">
        <property type="entry name" value="RNA_2'-PTrans_KptA"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR042080">
        <property type="entry name" value="RNA_2'-PTrans_N"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR12684">
        <property type="entry name" value="PTHR12684"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01885">
        <property type="entry name" value="PTS_2-RNA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56784">
        <property type="entry name" value="SSF56784"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="6" id="KW-0012">Acyltransferase</keyword>
    <keyword evidence="3 5" id="KW-0520">NAD</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 5 6" id="KW-0808">Transferase</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00009836"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023027"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00025212"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00299"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="ABX38388.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="394" mass="43323" checksum="12EC179FC5F93F58" modified="2008-01-15" version="1">MEMDRMNNKNTLTSTSKFMSLVLRHNPGRAGLALDAQGWVSIDALLRGAQAAGRNISPALLMEVVQSCPKQRFAISADGLRIRASQGHSVQIDLGLQASVPPQRLYHGTATRFLDSILRTGLDRRNRHHVHLTDNLATARSVGQRYGRLVLLEIDAARMHADACSTARTTASGSRTAWHRTTCACEPKRNTMKPIIALDADGVLLDYNRAYAGAWERAFGQRPAEADPHAYWAMDRWAVQALDGERLQQFRACMDDDFWRSIPALGNALQACHDLQGAGYELVCVTALAARFEQARLGNLRDLGFPIDRVIATGRTTGLRSPKADALQRLGPVAFVDDYLPYLRDIGPGIHAALVCRGPNGTPNTGPDLVHAHSQHADLMAFSQWWLQQAPSHS</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="53" xmlns="http://uniprot.org/uniprot">
    <accession>A9C0U0</accession>
    <name>A9C0U0_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Rhodanese domain protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_5775</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX38403.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_5775"/>
    <dbReference type="PRIDE" id="A9C0U0"/>
    <dbReference type="EnsemblBacteria" id="ABX38403">
        <property type="protein sequence ID" value="ABX38403"/>
        <property type="gene ID" value="Daci_5775"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_5775"/>
    <dbReference type="eggNOG" id="COG0607">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="eggNOG" id="COG2897">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="eggNOG" id="COG5553">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_024972_0_0_4"/>
    <dbReference type="OMA" id="WEYGLVA"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.120.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.250.10">
        <property type="match status" value="4"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001763">
        <property type="entry name" value="Rhodanese-like_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036873">
        <property type="entry name" value="Rhodanese-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014710">
        <property type="entry name" value="RmlC-like_jellyroll"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011051">
        <property type="entry name" value="RmlC_Cupin_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00581">
        <property type="entry name" value="Rhodanese"/>
        <property type="match status" value="3"/>
    </dbReference>
    <dbReference type="SMART" id="SM00450">
        <property type="entry name" value="RHOD"/>
        <property type="match status" value="4"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51182">
        <property type="entry name" value="SSF51182"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52821">
        <property type="entry name" value="SSF52821"/>
        <property type="match status" value="4"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50206">
        <property type="entry name" value="RHODANESE_3"/>
        <property type="match status" value="4"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Rhodanese" evidence="1">
        <location>
            <begin position="258"/>
            <end position="348"/>
        </location>
    </feature>
    <feature type="domain" description="Rhodanese" evidence="1">
        <location>
            <begin position="381"/>
            <end position="472"/>
        </location>
    </feature>
    <feature type="domain" description="Rhodanese" evidence="1">
        <location>
            <begin position="526"/>
            <end position="598"/>
        </location>
    </feature>
    <feature type="domain" description="Rhodanese" evidence="1">
        <location>
            <begin position="628"/>
            <end position="716"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS50206"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX38403.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="774" mass="83496" checksum="8CED1A9FE2A39177" modified="2008-01-15" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="76" xmlns="http://uniprot.org/uniprot">
    <accession>A9C0Y9</accession>
    <name>A9C0Y9_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="8">ABC transporter related</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="8" type="ordered locus">Daci_5824</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="9" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX38452.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012207621.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_5824"/>
    <dbReference type="PRIDE" id="A9C0Y9"/>
    <dbReference type="EnsemblBacteria" id="ABX38452">
        <property type="protein sequence ID" value="ABX38452"/>
        <property type="gene ID" value="Daci_5824"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_5824"/>
    <dbReference type="eggNOG" id="COG1116">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_000604_1_22_4"/>
    <dbReference type="OMA" id="LMPWRSA"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003593">
        <property type="entry name" value="AAA+_ATPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003439">
        <property type="entry name" value="ABC_transporter-like_ATP-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017871">
        <property type="entry name" value="ABC_transporter-like_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00005">
        <property type="entry name" value="ABC_tran"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00382">
        <property type="entry name" value="AAA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00211">
        <property type="entry name" value="ABC_TRANSPORTER_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50893">
        <property type="entry name" value="ABC_TRANSPORTER_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3 6" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="1" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="5" id="KW-0472">Membrane</keyword>
    <keyword evidence="2 6" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4" id="KW-1278">Translocase</keyword>
    <feature type="domain" description="ABC transporter" evidence="7">
        <location>
            <begin position="16"/>
            <end position="252"/>
        </location>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <begin position="49"/>
            <end position="56"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022967"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00434"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="PROSITE" id="PS50893"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="ABX38452.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="271" mass="29008" checksum="E57A20C4A45DEC31" modified="2008-01-15" version="1">MTQTEAFSPDAPAPVLQARGAGFGYAPGKAVFEDISLSIAPREIVCLLGGSGCGKSSLLRVLGGLESPDGGAWSRGELQFLGQPLTAPHPRAGFVFQQPSLLPWLDARRNVGFGLDFERQPKLEAEARSQRVEQALQAVGLGGSGALYPSQLSGGMAQRVALARALAREPQLLLADEPFSALDAITRAEMQELMVDVVHRWHTAALLVTHDIDEAILVGDRILLMGGRPGHIVREWRVDIARPREDEAAAVTALRLDILSALHGVRHAAQA</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="71" xmlns="http://uniprot.org/uniprot">
    <accession>A9C0Z6</accession>
    <name>A9C0Z6_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Dihydroxy-acid dehydratase</fullName>
            <ecNumber evidence="3">4.2.1.9</ecNumber>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Daci_5831</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="4" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the IlvD/Edd family.</text>
    </comment>
    <dbReference type="EC" id="4.2.1.9" evidence="3"/>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX38459.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012207628.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_5831"/>
    <dbReference type="PRIDE" id="A9C0Z6"/>
    <dbReference type="EnsemblBacteria" id="ABX38459">
        <property type="protein sequence ID" value="ABX38459"/>
        <property type="gene ID" value="Daci_5831"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_5831"/>
    <dbReference type="eggNOG" id="COG0129">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_014271_3_0_4"/>
    <dbReference type="OMA" id="MEHFHHA"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004160">
        <property type="term" value="F:dihydroxy-acid dehydratase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0019752">
        <property type="term" value="P:carboxylic acid metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="GO" id="GO:0044238">
        <property type="term" value="P:primary metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.50.30.80">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR042096">
        <property type="entry name" value="Dihydro-acid_dehy_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000581">
        <property type="entry name" value="DiOHA_6PGluconate_deHydtase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020558">
        <property type="entry name" value="DiOHA_6PGluconate_deHydtase_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037237">
        <property type="entry name" value="IlvD/EDD_N"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00920">
        <property type="entry name" value="ILVD_EDD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF143975">
        <property type="entry name" value="SSF143975"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00886">
        <property type="entry name" value="ILVD_EDD_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2 3" id="KW-0456">Lyase</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00006486"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023239"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ABX38459.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="590" mass="62769" checksum="A211E50526060604" modified="2008-01-15" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="66" xmlns="http://uniprot.org/uniprot">
    <accession>A9C1I5</accession>
    <name>A9C1I5_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Beta-alanine--pyruvate transaminase</fullName>
            <ecNumber evidence="4">2.6.1.18</ecNumber>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ordered locus">Daci_6020</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="5" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="2">Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.</text>
    </comment>
    <dbReference type="EC" id="2.6.1.18" evidence="4"/>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX38648.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_6020"/>
    <dbReference type="PRIDE" id="A9C1I5"/>
    <dbReference type="EnsemblBacteria" id="ABX38648">
        <property type="protein sequence ID" value="ABX38648"/>
        <property type="gene ID" value="Daci_6020"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_6020"/>
    <dbReference type="eggNOG" id="COG0161">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_016922_4_3_4"/>
    <dbReference type="OMA" id="YHGVNIA"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016223">
        <property type="term" value="F:beta-alanine-pyruvate transaminase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030170">
        <property type="term" value="F:pyridoxal phosphate binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd00610">
        <property type="entry name" value="OAT_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.640.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.1150.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005814">
        <property type="entry name" value="Aminotrans_3"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015424">
        <property type="entry name" value="PyrdxlP-dep_Trfase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015421">
        <property type="entry name" value="PyrdxlP-dep_Trfase_major"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015422">
        <property type="entry name" value="PyrdxlP-dep_Trfase_small"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00202">
        <property type="entry name" value="Aminotran_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF000521">
        <property type="entry name" value="Transaminase_4ab_Lys_Orn"/>
        <property type="match status" value="3"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53383">
        <property type="entry name" value="SSF53383"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00600">
        <property type="entry name" value="AA_TRANSFER_CLASS_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-0032">Aminotransferase</keyword>
    <keyword evidence="1 2" id="KW-0663">Pyridoxal phosphate</keyword>
    <keyword evidence="4" id="KW-0670">Pyruvate</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4" id="KW-0808">Transferase</keyword>
    <feature type="region of interest" description="Disordered" evidence="3">
        <location>
            <begin position="1"/>
            <end position="23"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022898"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="RuleBase" id="RU003560"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="ABX38648.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="506" mass="54417" checksum="E161144BC70F4C86" modified="2008-01-15" version="1">MDSHNARSPGPDRQAPAHLQESASEPRYHALREIKRHDHNGPVPLFLSRPEEITMTLVPTEQGTAAATRTDAAWLDAHWMPFTGNREFKARPRMITSAQGAYYTDADGRKIFDGLSGLWCSGLGHGRREIAEAIGRAAQQLDYAPAFQFGHPASFALANKIKELTPAGLDHVFFTGSGSEAADTALKMARAYWRAKGQGGKTRLIGREKGYHGVNFGGISVGGMVGNRKTFGQGVEADHLPHTQPALGSFHKGMPATDGRALADRLLDLIALHDASNIAAVIVEPFSGSAGVVIPPAGYLQRLREICTQNNILLIFDEVITGFGRCGAMTGAEAFGVTPDIMNIAKQVTNGAQPLGAVVASREIYDTFMAAGGPEYMLEFPHGYTYSAHPIACAAGVAALDLLQREDGPGRVRALAPFFEQAVHSLKGAKHVADIRNFGLAAGFTIESLPGEPARRPYEIAMKCWDKGFYVRYGGDTIQIAPPFISEKAEIERLVSALGDALTETN</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="49" xmlns="http://uniprot.org/uniprot">
    <accession>A9C1P2</accession>
    <name>A9C1P2_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="1">p2 GpE family protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Daci_2589</name>
        <name evidence="2" type="ordered locus">Daci_2623</name>
    </gene>
    <organism evidence="1 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
            <strain evidence="1">SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="1" key="3">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX35227.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX35261.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012204506.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_2589"/>
    <dbReference type="PRIDE" id="A9C1P2"/>
    <dbReference type="EnsemblBacteria" id="ABX35227">
        <property type="protein sequence ID" value="ABX35227"/>
        <property type="gene ID" value="Daci_2589"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="ABX35261">
        <property type="protein sequence ID" value="ABX35261"/>
        <property type="gene ID" value="Daci_2623"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_2589"/>
    <dbReference type="KEGG" id="dac:Daci_2623"/>
    <dbReference type="eggNOG" id="ENOG50314P4">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_209063_2_0_4"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009493">
        <property type="entry name" value="P2_GpE"/>
    </dbReference>
    <dbReference type="Pfam" id="PF06528">
        <property type="entry name" value="Phage_P2_GpE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ABX35227.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX35261.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="38" mass="4609" checksum="8C3F22999D5BF653" modified="2008-01-15" version="1">MADLAMVFHWRPADMEDMSLAELGQWHERARERYESQD</sequence>
</entry>
<entry dataset="Swiss-Prot" created="2009-04-14" modified="2022-08-03" version="70" xmlns="http://uniprot.org/uniprot">
    <accession>A9C1Z0</accession>
    <name>RIMP_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Ribosome maturation factor RimP</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="1" type="primary">rimP</name>
        <name type="ordered locus">Daci_2988</name>
    </gene>
    <organism>
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference key="1">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain>DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="1">Required for maturation of 30S ribosomal subunits.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="1">Belongs to the RimP family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX35626.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012204832.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A9C1Z0"/>
    <dbReference type="SMR" id="A9C1Z0"/>
    <dbReference type="STRING" id="398578.Daci_2988"/>
    <dbReference type="PRIDE" id="A9C1Z0"/>
    <dbReference type="EnsemblBacteria" id="ABX35626">
        <property type="protein sequence ID" value="ABX35626"/>
        <property type="gene ID" value="Daci_2988"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_2988"/>
    <dbReference type="eggNOG" id="COG0779">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_070525_1_0_4"/>
    <dbReference type="OMA" id="YIHVSLY"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0042274">
        <property type="term" value="P:ribosomal small subunit biogenesis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd01734">
        <property type="entry name" value="YlxS_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.300.70">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01077">
        <property type="entry name" value="RimP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003728">
        <property type="entry name" value="Ribosome_maturation_RimP"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR028998">
        <property type="entry name" value="RimP_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036847">
        <property type="entry name" value="RimP_C_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR028989">
        <property type="entry name" value="RimP_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035956">
        <property type="entry name" value="RimP_N_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33867">
        <property type="entry name" value="PTHR33867"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02576">
        <property type="entry name" value="DUF150"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF74942">
        <property type="entry name" value="SSF74942"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF75420">
        <property type="entry name" value="SSF75420"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword id="KW-0963">Cytoplasm</keyword>
    <keyword id="KW-1185">Reference proteome</keyword>
    <keyword id="KW-0690">Ribosome biogenesis</keyword>
    <feature type="chain" id="PRO_1000136757" description="Ribosome maturation factor RimP">
        <location>
            <begin position="1"/>
            <end position="192"/>
        </location>
    </feature>
    <evidence type="ECO:0000255" key="1">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01077"/>
        </source>
    </evidence>
    <sequence length="192" mass="21224" checksum="42240DBA202709B0" modified="2008-01-15" version="1">MALQQIVEQTVTGLGYDLVEIERSAGGLLRVTIDLPWQPPVEGGPVVPEQFVTVEDCEKITRQLQFALEVDGADYTRLEVSSPGIDRPLRHEQDFTRFVGEVIDLTLKEPIGAAAEGQVSANRKKFRGTLERAEDGGWQIVWSDEPPVKPGQKVSKKRVPAPLQALGFTLEELREARLAPIVDFKGRSAKPV</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="48" xmlns="http://uniprot.org/uniprot">
    <accession>A9C2D3</accession>
    <name>A9C2D3_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Daci_3439</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="2" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX36077.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012205277.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_3439"/>
    <dbReference type="PRIDE" id="A9C2D3"/>
    <dbReference type="EnsemblBacteria" id="ABX36077">
        <property type="protein sequence ID" value="ABX36077"/>
        <property type="gene ID" value="Daci_3439"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_3439"/>
    <dbReference type="eggNOG" id="ENOG502Z7JG">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_067025_0_0_4"/>
    <dbReference type="OMA" id="MIPFNTV"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005564">
        <property type="entry name" value="Major_capsid_GpE"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03864">
        <property type="entry name" value="Phage_cap_E"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ABX36077.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="341" mass="37553" checksum="D49D478173513A0A" modified="2008-01-15" version="1">MATLDIFNDDAFSVSQLTQTIVDIPRVPTQLGDEGLFNEYGITTTSMMIERTGSGLKLVPTAPRGGVRATAGRERRKLIPIAAVHLPQGDTIMADEVQNVRAVGSETEVEQVSRIVSRQLTVLKGNIDLTLEHMRVGALRGEVLDADGVSVIWDLYQIFGMTRQVIGFDINSASSTTDLRQKTEDLKRAIQRKLGGKSFTRVRVKCSESWFDKFVGHNKMYKAWELYQNGAFNREFPGQTFLFNGVLFQVYSGGVVDGSGDQHDFIPAGKAYAYPEGVQGMFQIAYAPGDYMSTVNTLGVPYYASQERLPHDKGVDLESQSNPIVLNTLPEAVIELTTAAT</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="43" xmlns="http://uniprot.org/uniprot">
    <accession>A9C2D9</accession>
    <name>A9C2D9_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Putative transmembrane protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Daci_3445</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="2" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX36083.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012205283.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_3445"/>
    <dbReference type="PRIDE" id="A9C2D9"/>
    <dbReference type="EnsemblBacteria" id="ABX36083">
        <property type="protein sequence ID" value="ABX36083"/>
        <property type="gene ID" value="Daci_3445"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_3445"/>
    <dbReference type="eggNOG" id="ENOG5032Z4T">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_151254_0_0_4"/>
    <dbReference type="OMA" id="MAWVTRA"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ABX36083.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="130" mass="14825" checksum="332C34DCD0BC1F7C" modified="2008-01-15" version="1">MITLSDGMNTLNLNPDLRWSDEDNWHPVQQSVQRTITGALDIQAAAMDKGRPITLEPEDDSSAWMSSGIVVQLRNWAAVPGQQLILTLRNETRNVVFRHQDGGLEARPVVHYRDRTPTDWYLCVVRLMEI</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="55" xmlns="http://uniprot.org/uniprot">
    <accession>A9C2L9</accession>
    <name>A9C2L9_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Transcriptional regulator, HxlR family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_3736</name>
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    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
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            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
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    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
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                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
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            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX36368.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_3736"/>
    <dbReference type="PRIDE" id="A9C2L9"/>
    <dbReference type="EnsemblBacteria" id="ABX36368">
        <property type="protein sequence ID" value="ABX36368"/>
        <property type="gene ID" value="Daci_3736"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_3736"/>
    <dbReference type="eggNOG" id="COG1733">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_111585_0_1_4"/>
    <dbReference type="OMA" id="QWGERFL"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
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        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002577">
        <property type="entry name" value="HTH_HxlR"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036390">
        <property type="entry name" value="WH_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01638">
        <property type="entry name" value="HxlR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46785">
        <property type="entry name" value="SSF46785"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51118">
        <property type="entry name" value="HTH_HXLR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HTH hxlR-type" evidence="1">
        <location>
            <begin position="1"/>
            <end position="96"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS51118"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX36368.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="135" mass="14731" checksum="266839C290EFF963" modified="2008-01-15" version="1">MARSLDVIGDRWSLLIVRDAFDGISRFGDFQRSLGAARNILADRLRRLVEAGILETRPAAEGSAYLEYVLTAQGLELFPVIVALRQWGEGHLFAPGEAHSLLLDRQTGQPVAPMLPRGGDGRALLPGQTVVQKID</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="49" xmlns="http://uniprot.org/uniprot">
    <accession>A9C2Z9</accession>
    <name>A9C2Z9_DELAS</name>
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        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_4172</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
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            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
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            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
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    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
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                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
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            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX36803.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012205981.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_4172"/>
    <dbReference type="PRIDE" id="A9C2Z9"/>
    <dbReference type="EnsemblBacteria" id="ABX36803">
        <property type="protein sequence ID" value="ABX36803"/>
        <property type="gene ID" value="Daci_4172"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_4172"/>
    <dbReference type="eggNOG" id="ENOG5032RJK">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_195279_1_0_4"/>
    <dbReference type="OMA" id="VRFLAMY"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR021676">
        <property type="entry name" value="DUF3262"/>
    </dbReference>
    <dbReference type="Pfam" id="PF11660">
        <property type="entry name" value="DUF3262"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR03758">
        <property type="entry name" value="conj_TIGR03758"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="20"/>
            <end position="45"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="57"/>
            <end position="76"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX36803.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="77" mass="8458" checksum="54C638E484DF6F79" modified="2008-01-15" version="1">MNGAQVSAFQANSGIAPSAMATVLVGIVFAVLLVWGVWAIRTAYVGWAENRLNQRQFLGVCIRFVAMYLVMTFFLLS</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="59" xmlns="http://uniprot.org/uniprot">
    <accession>A9C386</accession>
    <name>A9C386_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="7">Major facilitator superfamily MFS_1</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ordered locus">Daci_4568</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="8" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX37197.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012206367.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_4568"/>
    <dbReference type="PRIDE" id="A9C386"/>
    <dbReference type="EnsemblBacteria" id="ABX37197">
        <property type="protein sequence ID" value="ABX37197"/>
        <property type="gene ID" value="Daci_4568"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_4568"/>
    <dbReference type="eggNOG" id="COG2814">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_047644_2_0_4"/>
    <dbReference type="OMA" id="WNFGLVS"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0022857">
        <property type="term" value="F:transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.1250.20">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011701">
        <property type="entry name" value="MFS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020846">
        <property type="entry name" value="MFS_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036259">
        <property type="entry name" value="MFS_trans_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07690">
        <property type="entry name" value="MFS_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF103473">
        <property type="entry name" value="SSF103473"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50850">
        <property type="entry name" value="MFS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4 5" id="KW-0472">Membrane</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 5" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="3 5" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="15"/>
            <end position="35"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="55"/>
            <end position="72"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="79"/>
            <end position="98"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="104"/>
            <end position="124"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="145"/>
            <end position="164"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="176"/>
            <end position="195"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="216"/>
            <end position="238"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="258"/>
            <end position="277"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="284"/>
            <end position="303"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="309"/>
            <end position="330"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="342"/>
            <end position="361"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="373"/>
            <end position="390"/>
        </location>
    </feature>
    <feature type="domain" description="MFS" evidence="6">
        <location>
            <begin position="210"/>
            <end position="401"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="PROSITE" id="PS50850"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="ABX37197.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="401" mass="41724" checksum="6BF6D92A740A1132" modified="2008-01-15" version="1">MTPEQHTPALQRRNLGLLVAAQSLGGASPPIIISLGGLVGQQLSTNPTATTLPVSIYQLGLALSTLPAAWLMQRMGRRTAYVLGAILGVVSGVIAAQGIAQSDFVTFCIGTALAGFYAACVQSYRFAATDAMTDPAEQARAISRVMIGGLIAAIIGPQVVIWTRDALPMTPFAGSFYSQAVLALLALPLLLGLKLPPPQARAVAGEARPLAEIARTPQFIVAASAGVVSYGLMAFLMTAAPMAMVGCGHTVGEAALGIQWHVLAMFAPSFFTGRLIARFGKRRITALGLVMIAASALMALMGLELLHFWGSLVLLGVGWNFGFIGATAMVTECYRPAERAKVQALNDFLVFGTVAVASFGSGQLLHTAGWDGINTWLLPIVGVVLLMLAVQGRGRGAGAPA</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="73" xmlns="http://uniprot.org/uniprot">
    <accession>A9C3A7</accession>
    <name>A9C3A7_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="9">Sulfate transport system permease protein CysT</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="12" type="ordered locus">Daci_4589</name>
    </gene>
    <organism evidence="12 13">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="12 13" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="13">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="13" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="13">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="9">Part of the ABC transporter complex (TC 3.A.1.6.1) involved in sulfate/thiosulfate import.</text>
    </comment>
    <comment type="function">
        <text evidence="8">Part of the ABC transporter complex CysAWTP (TC 3.A.1.6.1) involved in sulfate/thiosulfate import. Probably responsible for the translocation of the substrate across the membrane.</text>
    </comment>
    <comment type="subunit">
        <text evidence="2">The complex is composed of two ATP-binding proteins (CysA), two transmembrane proteins (CysT and CysW) and a solute-binding protein (CysP).</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="9">Cell inner membrane</location>
            <topology evidence="9">Multi-pass membrane protein</topology>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="9">Belongs to the binding-protein-dependent transport system permease family. CysTW subfamily.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX37218.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_4589"/>
    <dbReference type="PRIDE" id="A9C3A7"/>
    <dbReference type="EnsemblBacteria" id="ABX37218">
        <property type="protein sequence ID" value="ABX37218"/>
        <property type="gene ID" value="Daci_4589"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_4589"/>
    <dbReference type="eggNOG" id="COG0555">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_016047_14_0_4"/>
    <dbReference type="OMA" id="VFISGNM"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015419">
        <property type="term" value="F:ABC-type sulfate transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd06261">
        <property type="entry name" value="TM_PBP2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.3720.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011865">
        <property type="entry name" value="CysT_permease"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000515">
        <property type="entry name" value="MetI-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035906">
        <property type="entry name" value="MetI-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005667">
        <property type="entry name" value="Sulph_transpt2"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30406">
        <property type="entry name" value="PTHR30406"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30406:SF8">
        <property type="entry name" value="PTHR30406:SF8"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00528">
        <property type="entry name" value="BPD_transp_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF161098">
        <property type="entry name" value="SSF161098"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00969">
        <property type="entry name" value="3a0106s02"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR02139">
        <property type="entry name" value="permease_CysT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50928">
        <property type="entry name" value="ABC_TM1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="9" id="KW-0997">Cell inner membrane</keyword>
    <keyword evidence="9" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="7 9" id="KW-0472">Membrane</keyword>
    <keyword evidence="13" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="6 9" id="KW-0764">Sulfate transport</keyword>
    <keyword evidence="4 9" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="5 9" id="KW-1133">Transmembrane helix</keyword>
    <keyword evidence="3 9" id="KW-0813">Transport</keyword>
    <feature type="transmembrane region" description="Helical" evidence="9">
        <location>
            <begin position="40"/>
            <end position="68"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="9">
        <location>
            <begin position="95"/>
            <end position="117"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="9">
        <location>
            <begin position="129"/>
            <end position="152"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="9">
        <location>
            <begin position="172"/>
            <end position="194"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="9">
        <location>
            <begin position="215"/>
            <end position="237"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="9">
        <location>
            <begin position="243"/>
            <end position="266"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="9">
        <location>
            <begin position="273"/>
            <end position="294"/>
        </location>
    </feature>
    <feature type="domain" description="ABC transmembrane type-1" evidence="11">
        <location>
            <begin position="91"/>
            <end position="294"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="10">
        <location>
            <begin position="1"/>
            <end position="34"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00011779"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022448"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023032"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00025323"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="RuleBase" id="RU366001"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="11">
        <source>
            <dbReference type="PROSITE" id="PS50928"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="EMBL" id="ABX37218.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="13">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="308" mass="32939" checksum="AC637D34C62D4BAD" modified="2008-01-15" version="1">MADLESNMVSAVPTSPRPGADAPVPAPSGAARKGRGAKRVLPGFGLTLGYTLFYLSLIVLIPLSALLFKTFSLTWPQFWEAVASPRVLASYRLTFGASFAAACVNLVFGLLIAWVLVRYKFPGKKIVDALVDLPFALPTAVAGISLTALLAGNGWVGQYLEPYGIQLAFNPNGVVIALIFIGLPFVVRTVQPVLEDSEKELEEAATSLGASRWQIFYKVILPAITPALLTGFAMAFARAIGEYGSVIFIAGNMPMISEITPLIIIGKLEQYDYAGATAVAVVMLLFSFVMLLVINALQAWQRKHSGGA</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-05-25" version="76" xmlns="http://uniprot.org/uniprot">
    <accession>A9C3B5</accession>
    <name>A9C3B5_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="6">Binding-protein-dependent transport systems inner membrane component</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ordered locus">Daci_4597</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="7" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="4">Cell membrane</location>
            <topology evidence="4">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="4">Belongs to the binding-protein-dependent transport system permease family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX37226.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012206396.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_4597"/>
    <dbReference type="EnsemblBacteria" id="ABX37226">
        <property type="protein sequence ID" value="ABX37226"/>
        <property type="gene ID" value="Daci_4597"/>
    </dbReference>
    <dbReference type="GeneID" id="60688871"/>
    <dbReference type="KEGG" id="dac:Daci_4597"/>
    <dbReference type="eggNOG" id="COG2011">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_077375_0_1_4"/>
    <dbReference type="OMA" id="FGYQRFR"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0055085">
        <property type="term" value="P:transmembrane transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd06261">
        <property type="entry name" value="TM_PBP2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.3720.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000515">
        <property type="entry name" value="MetI-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035906">
        <property type="entry name" value="MetI-like_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00528">
        <property type="entry name" value="BPD_transp_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF161098">
        <property type="entry name" value="SSF161098"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50928">
        <property type="entry name" value="ABC_TM1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3 4" id="KW-0472">Membrane</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1 4" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="2 4" id="KW-1133">Transmembrane helix</keyword>
    <keyword evidence="4" id="KW-0813">Transport</keyword>
    <feature type="transmembrane region" description="Helical" evidence="4">
        <location>
            <begin position="20"/>
            <end position="44"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="4">
        <location>
            <begin position="56"/>
            <end position="78"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="4">
        <location>
            <begin position="84"/>
            <end position="108"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="4">
        <location>
            <begin position="149"/>
            <end position="171"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="4">
        <location>
            <begin position="191"/>
            <end position="210"/>
        </location>
    </feature>
    <feature type="domain" description="ABC transmembrane type-1" evidence="5">
        <location>
            <begin position="16"/>
            <end position="210"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="RuleBase" id="RU363032"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="PROSITE" id="PS50928"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="ABX37226.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="221" mass="23465" checksum="272FD0B0F72986FF" modified="2008-01-15" version="1">MSENIVEILPELWLAMGQTLLMLGIGLSAAVLIGGPLGVLLFLLGPGQSLDNRPAFAVLNWTVNTVRSFPFIILLVALVPFTRWLAGTSIGPLAAAVPLSVAAIPYLARLVDQCLRDVPRGVIEAAHAMGASELQIVWRVLIVEARSGLVLALTVLAVSFLSYSAIAGVVGGGGIGDLAIRYGYYRFQTDVMVLTVTILVAMVQVIQFVGNTAARRLDKRG</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="58" xmlns="http://uniprot.org/uniprot">
    <accession>A9C3B8</accession>
    <name>A9C3B8_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="7">Cobalt transport protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ordered locus">Daci_4600</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="8" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the CbiQ family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX37229.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012206399.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_4600"/>
    <dbReference type="EnsemblBacteria" id="ABX37229">
        <property type="protein sequence ID" value="ABX37229"/>
        <property type="gene ID" value="Daci_4600"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_4600"/>
    <dbReference type="eggNOG" id="COG0619">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_056469_4_2_4"/>
    <dbReference type="OMA" id="MKAQMSR"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003339">
        <property type="entry name" value="ABC/ECF_trnsptr_transmembrane"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02361">
        <property type="entry name" value="CbiQ"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5 6" id="KW-0472">Membrane</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 6" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="4 6" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="21"/>
            <end position="52"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="64"/>
            <end position="82"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00008564"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="ABX37229.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="197" mass="21713" checksum="5ED2A58BCCA8A967" modified="2008-01-15" version="1">MGSLYSEYTSWLHAWSAGRKLLLMALLGTGLFLIDSPWLLALAGAACGLLWLSLGRATEGARRLMLSVTVAALLVAAFHVWMQHYALAAASALRLVCASTLGMALTVSTRPSDLVDVLERLLVPLERIGISPEQVALQLALMLRFTEHFFVQWKRMDDAHRLRTGRAGGLRLIAPLTIHMLQATRRVSDALWARLGR</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2021-06-02" version="61" xmlns="http://uniprot.org/uniprot">
    <accession>A9C3E5</accession>
    <name>A9C3E5_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="6">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ordered locus">Daci_4627</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="7" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="5">Belongs to the BI1 family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX37256.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012206426.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_4627"/>
    <dbReference type="EnsemblBacteria" id="ABX37256">
        <property type="protein sequence ID" value="ABX37256"/>
        <property type="gene ID" value="Daci_4627"/>
    </dbReference>
    <dbReference type="GeneID" id="60688839"/>
    <dbReference type="KEGG" id="dac:Daci_4627"/>
    <dbReference type="eggNOG" id="COG0670">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_058671_2_1_4"/>
    <dbReference type="OMA" id="SHNAYAE"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006214">
        <property type="entry name" value="Bax_inhibitor_1-related"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR23291">
        <property type="entry name" value="PTHR23291"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01027">
        <property type="entry name" value="Bax1-I"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4 5" id="KW-0472">Membrane</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 5" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="3 5" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="28"/>
            <end position="50"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="56"/>
            <end position="74"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="86"/>
            <end position="108"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="114"/>
            <end position="134"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="146"/>
            <end position="164"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="170"/>
            <end position="187"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="199"/>
            <end position="225"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="RuleBase" id="RU004379"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="ABX37256.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="230" mass="24374" checksum="C351DC9FDAC88A97" modified="2008-01-15" version="1">MNDQVTTLGSAGYGVSQQERNRVLRNTYWLLALSLLPTVLGAWLGVATGITRSLSGGLGLIVFLGGAFGFMFAIEKTKHSAAGIPVLLGFTFFMGLMLSRMIGMILGFKNGSELIMTAFAGTAGVFLVMASLATVIKRDLSGMGKFLFVGVLVLFVGSIINVFIGSTAGMMAISVAAIGIFSAYMLYDLKQIMDGGETNYISATLALYLDLFNVFQSLLALLGIMGGERD</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="89" xmlns="http://uniprot.org/uniprot">
    <accession>A9C3H2</accession>
    <name>A9C3H2_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="7 10">Adenosine 5'-phosphosulfate reductase</fullName>
            <shortName evidence="10">APS reductase</shortName>
            <ecNumber evidence="6 10">1.8.4.10</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="9 10">5'-adenylylsulfate reductase</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="8 10">Thioredoxin-dependent 5'-adenylylsulfate reductase</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="10" type="primary">cysH</name>
        <name evidence="12" type="ordered locus">Daci_4654</name>
    </gene>
    <organism evidence="12 13">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="12 13" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="13">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="13" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="13">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="4 10">Catalyzes the formation of sulfite from adenosine 5'-phosphosulfate (APS) using thioredoxin as an electron donor.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="3 10">
            <text>[thioredoxin]-disulfide + AMP + 2 H(+) + sulfite = [thioredoxin]-dithiol + adenosine 5'-phosphosulfate</text>
            <dbReference type="Rhea" id="RHEA:21976"/>
            <dbReference type="Rhea" id="RHEA-COMP:10698"/>
            <dbReference type="Rhea" id="RHEA-COMP:10700"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:17359"/>
            <dbReference type="ChEBI" id="CHEBI:29950"/>
            <dbReference type="ChEBI" id="CHEBI:50058"/>
            <dbReference type="ChEBI" id="CHEBI:58243"/>
            <dbReference type="ChEBI" id="CHEBI:456215"/>
            <dbReference type="EC" id="1.8.4.10"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="10">
            <name>[4Fe-4S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:49883"/>
        </cofactor>
        <text evidence="10">Binds 1 [4Fe-4S] cluster per subunit.</text>
    </comment>
    <comment type="pathway">
        <text evidence="5 10">Sulfur metabolism; hydrogen sulfide biosynthesis; sulfite from sulfate.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="10">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="1 10">Belongs to the PAPS reductase family. CysH subfamily.</text>
    </comment>
    <dbReference type="EC" id="1.8.4.10" evidence="6 10"/>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX37283.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012206453.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_4654"/>
    <dbReference type="PRIDE" id="A9C3H2"/>
    <dbReference type="EnsemblBacteria" id="ABX37283">
        <property type="protein sequence ID" value="ABX37283"/>
        <property type="gene ID" value="Daci_4654"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_4654"/>
    <dbReference type="eggNOG" id="COG0175">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_044089_1_0_4"/>
    <dbReference type="OMA" id="PIARWTQ"/>
    <dbReference type="UniPathway" id="UPA00034">
        <property type="reaction ID" value="UER00027"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043866">
        <property type="term" value="F:adenylyl-sulfate reductase (thioredoxin) activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="RHEA"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004604">
        <property type="term" value="F:phosphoadenylyl-sulfate reductase (thioredoxin) activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0019344">
        <property type="term" value="P:cysteine biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0019379">
        <property type="term" value="P:sulfate assimilation, phosphoadenylyl sulfate reduction by phosphoadenylyl-sulfate reductase (thioredoxin)"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd01713">
        <property type="entry name" value="PAPS_reductase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.620">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00063">
        <property type="entry name" value="CysH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011798">
        <property type="entry name" value="APS_reductase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004511">
        <property type="entry name" value="PAPS/APS_Rdtase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002500">
        <property type="entry name" value="PAPS_reduct"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014729">
        <property type="entry name" value="Rossmann-like_a/b/a_fold"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01507">
        <property type="entry name" value="PAPS_reduct"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF000857">
        <property type="entry name" value="PAPS_reductase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR02055">
        <property type="entry name" value="APS_reductase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00434">
        <property type="entry name" value="cysH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="10" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="10" id="KW-0408">Iron</keyword>
    <keyword evidence="10" id="KW-0411">Iron-sulfur</keyword>
    <keyword evidence="10" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="2 10 12" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="13" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="PAPS_reduct" evidence="11">
        <location>
            <begin position="50"/>
            <end position="224"/>
        </location>
    </feature>
    <feature type="active site" description="Nucleophile; cysteine thiosulfonate intermediate" evidence="10">
        <location>
            <position position="246"/>
        </location>
    </feature>
    <feature type="binding site" evidence="10">
        <location>
            <position position="133"/>
        </location>
        <ligand>
            <name>[4Fe-4S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:49883"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="10">
        <location>
            <position position="134"/>
        </location>
        <ligand>
            <name>[4Fe-4S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:49883"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="10">
        <location>
            <position position="218"/>
        </location>
        <ligand>
            <name>[4Fe-4S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:49883"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="10">
        <location>
            <position position="221"/>
        </location>
        <ligand>
            <name>[4Fe-4S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:49883"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00009732"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023002"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00024280"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00024298"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00024327"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00024386"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00029514"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00030894"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00032041"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00063"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="11">
        <source>
            <dbReference type="Pfam" id="PF01507"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="EMBL" id="ABX37283.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="13">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="252" mass="27561" checksum="2E4FA9B8D56DF7FF" modified="2008-01-15" version="1">MGAQSFLSRQASAKATEVNGRASNGFADKLAATEALLREAAALGAEAVTQASSLGAEDVVITDIIHRLGLDIPVFVLDTGALHTETLALLERTQSLPGLSVKVYRPQLESVIHFIRDNGQDAMYRSIELRKACCGVRKMEPLARALAGKSAWITGLRREQSNARADVPAVDRSEVETKGLTKFNPLTDWTQGDVWHYIASHGVDYNPLHDQFYPSIGCAPCTRAVSLGEDFRAGRWWWEDEAAKECGLHAKK</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="45" xmlns="http://uniprot.org/uniprot">
    <accession>A9C3M0</accession>
    <name>A9C3M0_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">HNHc domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_4702</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX37331.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012206501.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_4702"/>
    <dbReference type="PRIDE" id="A9C3M0"/>
    <dbReference type="EnsemblBacteria" id="ABX37331">
        <property type="protein sequence ID" value="ABX37331"/>
        <property type="gene ID" value="Daci_4702"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_4702"/>
    <dbReference type="eggNOG" id="ENOG5032S64">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_086933_1_0_4"/>
    <dbReference type="OMA" id="SDMADIC"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR044925">
        <property type="entry name" value="His-Me_finger_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003615">
        <property type="entry name" value="HNH_nuc"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13392">
        <property type="entry name" value="HNH_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54060">
        <property type="entry name" value="SSF54060"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HNHc" evidence="1">
        <location>
            <begin position="191"/>
            <end position="234"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF13392"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX37331.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="279" mass="31611" checksum="8346700258C6A7B2" modified="2008-01-15" version="1">MSKNTPWRAEDDAYLRAHYPTQPTAAVAAHLQRSARHVQQRAYGLGVKKAPGAKTLRTGRWTHLDDLLQLLYADMLNEDLGELLGMPMQDIATRASRLGLHKSPAVLSQTYSTSMLRQGRRQGQFTAGFKPWNKGLHGYSAELGRSHFKAGNRPPTWVPVGTERWTTPPRALPHAARYLKRKVAEPNRWALVHRIVWEQHRGPIPEGHAVIFHDGDTSNFDINNLRCIPRAELSRSNGAAVPIDLLPVWELTRQLDQEIKEIEKAEHDHHHNRHPARAA</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="51" xmlns="http://uniprot.org/uniprot">
    <accession>A9BLI5</accession>
    <name>A9BLI5_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">PEGA domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Daci_3839</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="4" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX36470.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012205664.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_3839"/>
    <dbReference type="PRIDE" id="A9BLI5"/>
    <dbReference type="EnsemblBacteria" id="ABX36470">
        <property type="protein sequence ID" value="ABX36470"/>
        <property type="gene ID" value="Daci_3839"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_3839"/>
    <dbReference type="eggNOG" id="COG0515">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_1060603_0_0_4"/>
    <dbReference type="OMA" id="KEWARCE"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.25.40.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013229">
        <property type="entry name" value="PEGA"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011990">
        <property type="entry name" value="TPR-like_helical_dom_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08308">
        <property type="entry name" value="PEGA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="1">
        <location>
            <begin position="1"/>
            <end position="28"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5002735781" description="PEGA domain-containing protein" evidence="1">
        <location>
            <begin position="29"/>
            <end position="262"/>
        </location>
    </feature>
    <feature type="domain" description="PEGA" evidence="2">
        <location>
            <begin position="204"/>
            <end position="258"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF08308"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ABX36470.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="262" mass="28486" checksum="E998523B6F76B9F4" modified="2008-01-15" version="1">MARLMNHRWRWMLCTAVLGLPCLAHSQAACEEAAPAQTGSAGRPQLAQGIALFEARDLAQAERALQAALFGGLADPMERASAHKYLAYTYCTHKEWARCEAAFDSAFSAHPGFALQAYETTGTPWRDAYSRAQDRWIQRCPSAQRLRTEPAAPTAGGFALNSRVITSITALTPGLAPARSAALAARSETPRTDHNLRLRVSPWANVLINGKPSGVTPPVVLLKLAPGSHTVELRNPGFESYRQVIRITDGQSVTLSHDFDAR</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-01-19" version="44" xmlns="http://uniprot.org/uniprot">
    <accession>A9BLL3</accession>
    <name>A9BLL3_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_3867</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX36498.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012205692.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_3867"/>
    <dbReference type="EnsemblBacteria" id="ABX36498">
        <property type="protein sequence ID" value="ABX36498"/>
        <property type="gene ID" value="Daci_3867"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_3867"/>
    <dbReference type="eggNOG" id="ENOG5033U7H">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_728868_0_0_4"/>
    <dbReference type="OMA" id="NDWFNVA"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="1">
        <location>
            <begin position="1"/>
            <end position="30"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5002735594" evidence="1">
        <location>
            <begin position="31"/>
            <end position="385"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX36498.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="385" mass="40857" checksum="D98BEA239563B94E" modified="2008-01-15" version="1">MPWSATSRRFATIGVMLASALLSAACTRNADDSPAVSSGQAKPASFASSNDQDPYRYLYTVYCNGTVDRLDLVQRSKVGSFQLSERSGSPPAVAALAQPGVRPGGCLARSVATDDAQDRTAAMVHIVASSHVDPDADGRKPYQLLTFELPQWTLQQTRNLGSLDAPPRLAISANASLTVQPRDEDPAAAMAAQVQSWAGADAMTWANAIEWSAGNVLLTYALPDQRGTGAALALRTGARIVRLAEFRHGSGDIPPDLRLAPGGQFVLATMKRSVRLGEGLSKVEATGELRLYGADGRQLSVLNLESLAGSVLALSQSGKLDLDQPRTDNDWFNVALTPGGLAVFTDRRGNYQFIALGHTFRPDPVIDPALDDADGARPGLVYAAR</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="35" xmlns="http://uniprot.org/uniprot">
    <accession>A9BM50</accession>
    <name>A9BM50_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_4766</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX37395.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012206565.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="PRIDE" id="A9BM50"/>
    <dbReference type="EnsemblBacteria" id="ABX37395">
        <property type="protein sequence ID" value="ABX37395"/>
        <property type="gene ID" value="Daci_4766"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_4766"/>
    <dbReference type="HOGENOM" id="CLU_1892786_0_0_4"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="1">
        <location>
            <begin position="1"/>
            <end position="24"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5002732305" evidence="1">
        <location>
            <begin position="25"/>
            <end position="134"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX37395.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="134" mass="14497" checksum="798F79C07026FA76" modified="2008-01-15" version="1">MRLAPSFLFSLLMLLSIFCGQVAASASSDGLESDGLLAHHPIVTIDEEFLEELAEVEEDDETEFAELTAHGGNTRQLLALLACGEDRSAEMYWPPEPIAVQVVSLWAPPSTYSQAHLSPAPGQLLRPPRPSLLG</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="70" xmlns="http://uniprot.org/uniprot">
    <accession>A9BMB1</accession>
    <name>A9BMB1_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="8">Acyl-CoA dehydrogenase domain protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="8" type="ordered locus">Daci_4827</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="9" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>FAD</name>
            <dbReference type="ChEBI" id="CHEBI:57692"/>
        </cofactor>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the acyl-CoA dehydrogenase family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX37456.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012206626.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_4827"/>
    <dbReference type="PRIDE" id="A9BMB1"/>
    <dbReference type="EnsemblBacteria" id="ABX37456">
        <property type="protein sequence ID" value="ABX37456"/>
        <property type="gene ID" value="Daci_4827"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_4827"/>
    <dbReference type="eggNOG" id="COG1960">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_018204_0_3_4"/>
    <dbReference type="OMA" id="RSPWMTE"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003995">
        <property type="term" value="F:acyl-CoA dehydrogenase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0050660">
        <property type="term" value="F:flavin adenine dinucleotide binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.540.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.110.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006089">
        <property type="entry name" value="Acyl-CoA_DH_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006091">
        <property type="entry name" value="Acyl-CoA_Oxase/DH_mid-dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR046373">
        <property type="entry name" value="Acyl-CoA_Oxase/DH_mid-dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036250">
        <property type="entry name" value="AcylCo_DH-like_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009075">
        <property type="entry name" value="AcylCo_DH/oxidase_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013786">
        <property type="entry name" value="AcylCoA_DH/ox_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037069">
        <property type="entry name" value="AcylCoA_DH/ox_N_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009100">
        <property type="entry name" value="AcylCoA_DH/oxidase_NM_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00441">
        <property type="entry name" value="Acyl-CoA_dh_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02770">
        <property type="entry name" value="Acyl-CoA_dh_M"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02771">
        <property type="entry name" value="Acyl-CoA_dh_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47203">
        <property type="entry name" value="SSF47203"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56645">
        <property type="entry name" value="SSF56645"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00072">
        <property type="entry name" value="ACYL_COA_DH_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00073">
        <property type="entry name" value="ACYL_COA_DH_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-0274">FAD</keyword>
    <keyword evidence="3" id="KW-0285">Flavoprotein</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Acyl-CoA_dh_N" evidence="7">
        <location>
            <begin position="11"/>
            <end position="121"/>
        </location>
    </feature>
    <feature type="domain" description="Acyl-CoA_dh_M" evidence="6">
        <location>
            <begin position="125"/>
            <end position="221"/>
        </location>
    </feature>
    <feature type="domain" description="Acyl-CoA_dh_1" evidence="5">
        <location>
            <begin position="234"/>
            <end position="382"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001974"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00009347"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022630"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022827"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="Pfam" id="PF00441"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="Pfam" id="PF02770"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="Pfam" id="PF02771"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="ABX37456.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="382" mass="41878" checksum="3204183C0E8A6947" modified="2008-01-15" version="1">MPLQLTRSWSTPELESLRATAVRFLETEMQPQDEAARQRGNVGHAIWRRAGELGLLCTDIPEDYGGGGGDFRHEAVIHEEMARRALSGMSNSVHSIVAHYLLNHGTEAQKRKYLPAMARGELVGAIAMTEPGAGSDLQGVRTRAELRDGRYRINGSKTFITNGLLAGLILVVCKTDPAQGARGTSILIVETRDCAGFRVGRVLDKMGMKAQDTSELFFDDVTVPQDALLGGREGQGFYQLMGDLPYERLIIGLTALACMEGAYEATLAYVRERRAFGQAIADMQNTRFKLAEVATTLTVGRAFIDRCVEQLVAGTLDTATASMAKLWGSEAQGRVLDELVQLHGGYGYMNEYMVTRMYADARVQRIYGGTSEIMKEVIARAL</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="64" xmlns="http://uniprot.org/uniprot">
    <accession>A9BMK2</accession>
    <name>A9BMK2_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="4 6">Phosphate-binding protein PstS</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="9" type="ordered locus">Daci_4918</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="9 10" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="10" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="1 6">Part of the ABC transporter complex PstSACB involved in phosphate import.</text>
    </comment>
    <comment type="subunit">
        <text evidence="3 6">The complex is composed of two ATP-binding proteins (PstB), two transmembrane proteins (PstC and PstA) and a solute-binding protein (PstS).</text>
    </comment>
    <comment type="similarity">
        <text evidence="2 6">Belongs to the PstS family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX37547.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012206717.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_4918"/>
    <dbReference type="PRIDE" id="A9BMK2"/>
    <dbReference type="EnsemblBacteria" id="ABX37547">
        <property type="protein sequence ID" value="ABX37547"/>
        <property type="gene ID" value="Daci_4918"/>
    </dbReference>
    <dbReference type="GeneID" id="60689262"/>
    <dbReference type="KEGG" id="dac:Daci_4918"/>
    <dbReference type="eggNOG" id="COG0226">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_034528_1_0_4"/>
    <dbReference type="OMA" id="FPYPVYA"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043190">
        <property type="term" value="C:ATP-binding cassette (ABC) transporter complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0042301">
        <property type="term" value="F:phosphate ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0035435">
        <property type="term" value="P:phosphate ion transmembrane transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005673">
        <property type="entry name" value="ABC_phos-bd_PstS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR024370">
        <property type="entry name" value="PBP_domain"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12849">
        <property type="entry name" value="PBP_like_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF002756">
        <property type="entry name" value="PstS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00975">
        <property type="entry name" value="3a0107s03"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5 6" id="KW-0592">Phosphate transport</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="7" id="KW-0732">Signal</keyword>
    <keyword evidence="6" id="KW-0813">Transport</keyword>
    <feature type="signal peptide" evidence="7">
        <location>
            <begin position="1"/>
            <end position="24"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5002732329" description="Phosphate-binding protein PstS" evidence="7">
        <location>
            <begin position="25"/>
            <end position="346"/>
        </location>
    </feature>
    <feature type="domain" description="PBP_domain" evidence="8">
        <location>
            <begin position="22"/>
            <end position="306"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00002841"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00008725"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00011529"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00021889"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022592"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="PIRNR" id="PIRNR002756"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="Pfam" id="PF12849"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="ABX37547.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="346" mass="36509" checksum="86B3AEA0C1FBB485" modified="2008-01-15" version="1">MKLSVIHILVAGALSAGGMGQALAQQEATGAGASFPAPLYSKWAADYHKATGVKINYQSVGSSAGIKQIEAKTVDFGASDEPLKDDELAKKGLVQFPTVIGGIVPVVNIKGIQPGQLKLTGQVLGDIYLGKITKWNDEAIKALNPGVTLPDATIAPVRRADGSGTTFGFTNYLSKVNAEWKEKVGEGKAVNWPTGAGGKGNEGVAAFVGRLPNSIGYVEYAYVKQNKLTYTQLQTAGGAFVSPDDATFKAAAAGADWAKSFYQILTNQPGKDAWPITSATFIIMHKAQDKPAQAAASLKFFEWAYKSGDKTATDLDYVPMPDAVKNVIFQSWGQVKDASGTAISLK</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="67" xmlns="http://uniprot.org/uniprot">
    <accession>A9BMU5</accession>
    <name>A9BMU5_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">Protein HflC</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="4" type="ordered locus">Daci_5011</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="5" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="2">HflC and HflK could regulate a protease.</text>
    </comment>
    <comment type="similarity">
        <text evidence="1 2">Belongs to the band 7/mec-2 family. HflC subfamily.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX37640.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012206810.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_5011"/>
    <dbReference type="MEROPS" id="I87.001"/>
    <dbReference type="PRIDE" id="A9BMU5"/>
    <dbReference type="EnsemblBacteria" id="ABX37640">
        <property type="protein sequence ID" value="ABX37640"/>
        <property type="gene ID" value="Daci_5011"/>
    </dbReference>
    <dbReference type="GeneID" id="60689359"/>
    <dbReference type="KEGG" id="dac:Daci_5011"/>
    <dbReference type="eggNOG" id="COG0330">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_059167_3_0_4"/>
    <dbReference type="OMA" id="DFFAFYR"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0052547">
        <property type="term" value="P:regulation of peptidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd03405">
        <property type="entry name" value="SPFH_HflC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.479.30">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001107">
        <property type="entry name" value="Band_7"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036013">
        <property type="entry name" value="Band_7/SPFH_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010200">
        <property type="entry name" value="HflC"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR42911">
        <property type="entry name" value="PTHR42911"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01145">
        <property type="entry name" value="Band_7"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF005651">
        <property type="entry name" value="HflC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00244">
        <property type="entry name" value="PHB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF117892">
        <property type="entry name" value="SSF117892"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01932">
        <property type="entry name" value="hflC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="PHB" evidence="3">
        <location>
            <begin position="20"/>
            <end position="188"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00007862"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="PIRNR" id="PIRNR005651"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="SMART" id="SM00244"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="ABX37640.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="296" mass="33694" checksum="F8B96DB39CA3057B" modified="2008-01-15" version="1">MNRVGFFITSILLALALLSSMLFVVDQRQFGVVYALGQIKEVITEPGLNIKMPPPFQNVRYIDKRLLTLDSTDTEPMLTAEKQRVVIDWYVRWRISDPSEYIRNVGLDESAGAMQLNRVVRNAFQEEINRRTVRELLSSKRDALMNDVKREVLETVRGAKPWGVDVVDVRITRVDYAETITESVYRRMEAERKRVANELRSTGAAEGEKIRAEADRQREITIANAYRDAQKIKGEGDAEAARTYAEAFGKDPQFAQFYRSLEAYKASFAKKSDVLVLDPSQTDFFKAYRSGGSSGK</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2021-06-02" version="66" xmlns="http://uniprot.org/uniprot">
    <accession>A9BMW7</accession>
    <name>A9BMW7_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Sodium/glutamate symporter</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="1" type="primary">gltS</name>
        <name evidence="2" type="ordered locus">Daci_5033</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="1">Catalyzes the sodium-dependent transport of glutamate.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Cell inner membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="1">Belongs to the glutamate:Na(+) symporter (ESS) (TC 2.A.27) family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX37662.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012206832.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_5033"/>
    <dbReference type="EnsemblBacteria" id="ABX37662">
        <property type="protein sequence ID" value="ABX37662"/>
        <property type="gene ID" value="Daci_5033"/>
    </dbReference>
    <dbReference type="GeneID" id="60689381"/>
    <dbReference type="KEGG" id="dac:Daci_5033"/>
    <dbReference type="eggNOG" id="COG0786">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_040907_0_0_4"/>
    <dbReference type="OMA" id="PTAMVNM"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015501">
        <property type="term" value="F:glutamate:sodium symporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015813">
        <property type="term" value="P:L-glutamate transmembrane transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_02062">
        <property type="entry name" value="GltS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004445">
        <property type="entry name" value="GltS"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR36178">
        <property type="entry name" value="PTHR36178"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03616">
        <property type="entry name" value="Glt_symporter"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00210">
        <property type="entry name" value="gltS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="1" id="KW-0029">Amino-acid transport</keyword>
    <keyword evidence="1" id="KW-0997">Cell inner membrane</keyword>
    <keyword evidence="1" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="1" id="KW-0406">Ion transport</keyword>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0915">Sodium</keyword>
    <keyword evidence="1" id="KW-0739">Sodium transport</keyword>
    <keyword evidence="1" id="KW-0769">Symport</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <keyword evidence="1" id="KW-0813">Transport</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="6"/>
            <end position="25"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="37"/>
            <end position="57"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="69"/>
            <end position="88"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="95"/>
            <end position="117"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="158"/>
            <end position="181"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="254"/>
            <end position="273"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="285"/>
            <end position="305"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="311"/>
            <end position="334"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="346"/>
            <end position="369"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="381"/>
            <end position="405"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_02062"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX37662.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="409" mass="43430" checksum="52A388B237BC8791" modified="2008-01-15" version="1">MHLTFSAYYTLIFAALVLLLGKWLVQHLRLLREFNIPEPVAGGLVVAVALFVLNQTLGYTFSFSSELQMAFMLVFFSSIGLSANFAKLREGGRSLLLFLAVVAVFIGLQDLVGVSLATMLGLDPLFGLIAGSVTLTGGHGTAGAWGQVFEREYGIQGAVTLGIACATFGLVIGGLIGGPLAKALITRRRLAVHDPAAAPEKQPPLGESASHGGFENPEQTRLITTSAAIETLALFAGCLGFAEFMAQFTAGTLFSLPTFVWALAGGVVIRNTLDYVFHFQVFDRAIDVFGNASLSIYLAMALLSLKLWELAGLAAPLMVILAAQTLVMGLYAALVTFRIMGSNYDAAVLAAGHCGFGMGATPTAVANMQAITNQYGPSHKAFLIVPMVGAFFVDIVNATVIQLFIRWLH</sequence>
</entry>
<entry dataset="Swiss-Prot" created="2009-03-24" modified="2022-08-03" version="81" xmlns="http://uniprot.org/uniprot">
    <accession>A9BNH5</accession>
    <name>TRUA_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">tRNA pseudouridine synthase A</fullName>
            <ecNumber evidence="1">5.4.99.12</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="1">tRNA pseudouridine(38-40) synthase</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="1">tRNA pseudouridylate synthase I</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="1">tRNA-uridine isomerase I</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="1" type="primary">truA</name>
        <name type="ordered locus">Daci_5241</name>
    </gene>
    <organism>
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference key="1">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain>DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="1">Formation of pseudouridine at positions 38, 39 and 40 in the anticodon stem and loop of transfer RNAs.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>uridine(38/39/40) in tRNA = pseudouridine(38/39/40) in tRNA</text>
            <dbReference type="Rhea" id="RHEA:22376"/>
            <dbReference type="Rhea" id="RHEA-COMP:10085"/>
            <dbReference type="Rhea" id="RHEA-COMP:10087"/>
            <dbReference type="ChEBI" id="CHEBI:65314"/>
            <dbReference type="ChEBI" id="CHEBI:65315"/>
            <dbReference type="EC" id="5.4.99.12"/>
        </reaction>
    </comment>
    <comment type="subunit">
        <text evidence="1">Homodimer.</text>
    </comment>
    <comment type="similarity">
        <text evidence="1">Belongs to the tRNA pseudouridine synthase TruA family.</text>
    </comment>
    <dbReference type="EC" id="5.4.99.12" evidence="1"/>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX37870.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012207040.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A9BNH5"/>
    <dbReference type="SMR" id="A9BNH5"/>
    <dbReference type="STRING" id="398578.Daci_5241"/>
    <dbReference type="PRIDE" id="A9BNH5"/>
    <dbReference type="EnsemblBacteria" id="ABX37870">
        <property type="protein sequence ID" value="ABX37870"/>
        <property type="gene ID" value="Daci_5241"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_5241"/>
    <dbReference type="eggNOG" id="COG0101">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_014673_0_2_4"/>
    <dbReference type="OMA" id="FLYGMVR"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003723">
        <property type="term" value="F:RNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0106029">
        <property type="term" value="F:tRNA pseudouridine synthase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0031119">
        <property type="term" value="P:tRNA pseudouridine synthesis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd02570">
        <property type="entry name" value="PseudoU_synth_EcTruA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.70.580">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.70.660">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00171">
        <property type="entry name" value="TruA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020103">
        <property type="entry name" value="PsdUridine_synth_cat_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001406">
        <property type="entry name" value="PsdUridine_synth_TruA"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020097">
        <property type="entry name" value="PsdUridine_synth_TruA_a/b_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020095">
        <property type="entry name" value="PsdUridine_synth_TruA_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020094">
        <property type="entry name" value="TruA/RsuA/RluB/E/F_N"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11142">
        <property type="entry name" value="PTHR11142"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01416">
        <property type="entry name" value="PseudoU_synth_1"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF001430">
        <property type="entry name" value="tRNA_psdUrid_synth"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55120">
        <property type="entry name" value="SSF55120"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00071">
        <property type="entry name" value="hisT_truA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword id="KW-0413">Isomerase</keyword>
    <keyword id="KW-1185">Reference proteome</keyword>
    <keyword id="KW-0819">tRNA processing</keyword>
    <feature type="chain" id="PRO_1000097736" description="tRNA pseudouridine synthase A">
        <location>
            <begin position="1"/>
            <end position="282"/>
        </location>
    </feature>
    <feature type="active site" description="Nucleophile" evidence="1">
        <location>
            <position position="51"/>
        </location>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <position position="109"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <evidence type="ECO:0000255" key="1">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00171"/>
        </source>
    </evidence>
    <sequence length="282" mass="30969" checksum="C6B3580527D16100" modified="2008-01-15" version="1">MRVALGVAYNGQRYSGWQSQLSGNTIQDHLEAALGRFAAQEVHTLCAGRTDAGVHGLMQVVHFDTPLDRAPFSWVRGTNTFLPPDIAVQWAQPVPDAFHSRACATARRYAYVLLQSPVRPSVEAGRVGWVFHALDGDAMQAAARHLLGEHDFSSFRASGCQAKSPVKTLHRLSITRRMAGDGAQMAAASSMRPGDAAMECCYWRFEFEGSAFLHHMVRNIMGCLIAIGQGTYAPQWMQQVLDARSRDAAAPTFSPDGLYFLGPVYDPSWGLPSRSPAYDWLP</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="58" xmlns="http://uniprot.org/uniprot">
    <accession>A9BNZ1</accession>
    <name>A9BNZ1_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Curli production assembly/transport component CsgG</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Daci_5407</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="2" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX38036.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012207205.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_5407"/>
    <dbReference type="PRIDE" id="A9BNZ1"/>
    <dbReference type="EnsemblBacteria" id="ABX38036">
        <property type="protein sequence ID" value="ABX38036"/>
        <property type="gene ID" value="Daci_5407"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_5407"/>
    <dbReference type="eggNOG" id="COG1462">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_074310_1_0_4"/>
    <dbReference type="OMA" id="IGKFDNR"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030288">
        <property type="term" value="C:outer membrane-bounded periplasmic space"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005534">
        <property type="entry name" value="Curli_assmbl/transp-comp_CsgG"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03783">
        <property type="entry name" value="CsgG"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ABX38036.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="226" mass="24181" checksum="2034CD33B5ED7839" modified="2008-01-15" version="1">MTSRLWPCAAIAITLAAGLSGCSTTEQSRTLETAKPASASSVYQGPRSPISVGKFDNRSSFQRGIFSDGVDRLGGQARTILVTHLQQSGRFSVLDRDNMSETRQEAGFNRQEQSIKGATYVVTGDVSEFGRKVVGDRQFFGVLGRGKEQVAYAKVSLNIVRVQTSEVVYSVQGAGEYSLSNREIVGFGSTAGYDSTLNGKVLDLAIREAVDKLAAGIDSGAWKPAQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="89" xmlns="http://uniprot.org/uniprot">
    <accession>A9BP98</accession>
    <name>A9BP98_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">Histidine kinase</fullName>
            <ecNumber evidence="2">2.7.13.3</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="9" type="ordered locus">Daci_0015</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="9 10" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="10" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>ATP + protein L-histidine = ADP + protein N-phospho-L-histidine.</text>
            <dbReference type="EC" id="2.7.13.3"/>
        </reaction>
    </comment>
    <dbReference type="EC" id="2.7.13.3" evidence="2"/>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX32662.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012201955.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_0015"/>
    <dbReference type="PRIDE" id="A9BP98"/>
    <dbReference type="EnsemblBacteria" id="ABX32662">
        <property type="protein sequence ID" value="ABX32662"/>
        <property type="gene ID" value="Daci_0015"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_0015"/>
    <dbReference type="eggNOG" id="COG0642">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_000445_89_6_4"/>
    <dbReference type="OMA" id="KGVCDNI"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000155">
        <property type="term" value="F:phosphorelay sensor kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.565.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003660">
        <property type="entry name" value="HAMP_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003594">
        <property type="entry name" value="HATPase_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036890">
        <property type="entry name" value="HATPase_C_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005467">
        <property type="entry name" value="His_kinase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003661">
        <property type="entry name" value="HisK_dim/P"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036097">
        <property type="entry name" value="HisK_dim/P_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004358">
        <property type="entry name" value="Sig_transdc_His_kin-like_C"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00672">
        <property type="entry name" value="HAMP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02518">
        <property type="entry name" value="HATPase_c"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00344">
        <property type="entry name" value="BCTRLSENSOR"/>
    </dbReference>
    <dbReference type="SMART" id="SM00304">
        <property type="entry name" value="HAMP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00387">
        <property type="entry name" value="HATPase_c"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00388">
        <property type="entry name" value="HisKA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47384">
        <property type="entry name" value="SSF47384"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55874">
        <property type="entry name" value="SSF55874"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50885">
        <property type="entry name" value="HAMP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50109">
        <property type="entry name" value="HIS_KIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="5 9" id="KW-0418">Kinase</keyword>
    <keyword evidence="6" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-0597">Phosphoprotein</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4" id="KW-0808">Transferase</keyword>
    <keyword evidence="6" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="6" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="12"/>
            <end position="35"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="156"/>
            <end position="179"/>
        </location>
    </feature>
    <feature type="domain" description="HAMP" evidence="8">
        <location>
            <begin position="181"/>
            <end position="234"/>
        </location>
    </feature>
    <feature type="domain" description="Histidine kinase" evidence="7">
        <location>
            <begin position="242"/>
            <end position="464"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00000085"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00012438"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022553"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022777"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="PROSITE" id="PS50109"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="PROSITE" id="PS50885"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="ABX32662.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="468" mass="51012" checksum="F0E97C97A6B8EAB7" modified="2008-01-15" version="1">MSLAKPWSSTAFRLALTYGVLLVLTMSIVLSVFYVQTVGVLRMRTDRQAENHMRRLVEHRDKYGEPALEAEIQQTLLDGVNTDTEILILMDGEGNPIIGNADVVPARRLTEMGVRDLKVRRNGKIIAGRVAVAQLSDGKLLAVGSDMQVQSDVEELFGRASLLAGLVALGMAVLGAGAFRRVVEERAADIRSTMARVATGDLRQRIPVTRRDDEFTLLNRDINTMLDRLELLMDGIRHVSNTIAHNLRTPLTRILLRLRNAQQATPEEKNETLALVAQEVAELGVVFDKLLQIAEVESGASRKNFAPVDLRALLVDVVEFYEPLVEDAGGVLRLDVEGMPMALGDGDLLASAVANLVDNAIKYGSLPDSDHGADMQLRAGVAHEHGMDGGAWGVEIIVQDRGPGVDAQTREKMSTRFYRAESDREGYGLGLASVLAIVQLHGGKLGFENMHPGLQARIWLPGLPGNSP</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2021-09-29" version="54" xmlns="http://uniprot.org/uniprot">
    <accession>A9BPI7</accession>
    <name>A9BPI7_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ordered locus">Daci_0208</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="5" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Periplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the UPF0065 (bug) family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX32854.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_0208"/>
    <dbReference type="EnsemblBacteria" id="ABX32854">
        <property type="protein sequence ID" value="ABX32854"/>
        <property type="gene ID" value="Daci_0208"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_0208"/>
    <dbReference type="eggNOG" id="COG3181">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_045683_0_0_4"/>
    <dbReference type="OMA" id="WPAKPIQ"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0042597">
        <property type="term" value="C:periplasmic space"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.190.150">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005064">
        <property type="entry name" value="BUG"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR042100">
        <property type="entry name" value="Bug_dom1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006311">
        <property type="entry name" value="TAT_signal"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR42928">
        <property type="entry name" value="PTHR42928"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03401">
        <property type="entry name" value="TctC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF017082">
        <property type="entry name" value="YflP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51318">
        <property type="entry name" value="TAT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="3">
        <location>
            <begin position="1"/>
            <end position="35"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5002735878" evidence="3">
        <location>
            <begin position="36"/>
            <end position="335"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004418"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00006987"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="ABX32854.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="335" mass="35168" checksum="A5BE7D148036970E" modified="2008-01-15" version="1">MKRSPPMPMHPLPRRRLLSCLALATCALLAPAAHAAEAWPAKPIQLVIPYPPGGSADLLGRPLAVQLQQQLGQPVVLEYKPGAGGTLASQYVARARPDGYTVLMVLAAHAINDSLYPKLPYDTRRDFAPVSLVANLPMVVAASSKLPAKNIQELIQAAKANPGKLTFGSAGNGNTGHLAAEYFGSMAGVRMTHVPYKGSAGVVNAMLAGDIDLTFDSISTSMPHIRSGRMHALAVTSPQRSALAPEVATIQEQGIAGFDVTGWYAVIAPAGTPAEATQRLSREIASALRQPALQAQLAAGGYEPVGSTPEALQAHIDKEITRWATVVKSTGARVD</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="36" xmlns="http://uniprot.org/uniprot">
    <accession>A9BPQ1</accession>
    <name>A9BPQ1_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_0374</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX33020.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012202313.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="PRIDE" id="A9BPQ1"/>
    <dbReference type="EnsemblBacteria" id="ABX33020">
        <property type="protein sequence ID" value="ABX33020"/>
        <property type="gene ID" value="Daci_0374"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_0374"/>
    <dbReference type="HOGENOM" id="CLU_2232181_0_0_4"/>
    <dbReference type="OMA" id="YYPISEY"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="23"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX33020.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="105" mass="11343" checksum="30E659AB3373FD0D" modified="2008-01-15" version="1">MPDLDAPSGAHASPPFFSSPQVPREETSLYYPISEYEVYRIKDCMHQMGLVIDLCCMAGPDQQLSDLGGLMSFLTAQQRALRGTLQTVQARKATPGPACDPDPGG</sequence>
</entry>
<entry dataset="Swiss-Prot" created="2009-04-14" modified="2022-08-03" version="73" xmlns="http://uniprot.org/uniprot">
    <accession>A9BPR8</accession>
    <name>RL3_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">50S ribosomal protein L3</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="1" type="primary">rplC</name>
        <name type="ordered locus">Daci_0391</name>
    </gene>
    <organism>
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference key="1">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain>DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="1">One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit.</text>
    </comment>
    <comment type="subunit">
        <text evidence="1">Part of the 50S ribosomal subunit. Forms a cluster with proteins L14 and L19.</text>
    </comment>
    <comment type="PTM">
        <text evidence="1">Methylated by PrmB.</text>
    </comment>
    <comment type="similarity">
        <text evidence="1">Belongs to the universal ribosomal protein uL3 family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX33037.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012202329.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A9BPR8"/>
    <dbReference type="SMR" id="A9BPR8"/>
    <dbReference type="STRING" id="398578.Daci_0391"/>
    <dbReference type="PRIDE" id="A9BPR8"/>
    <dbReference type="EnsemblBacteria" id="ABX33037">
        <property type="protein sequence ID" value="ABX33037"/>
        <property type="gene ID" value="Daci_0391"/>
    </dbReference>
    <dbReference type="GeneID" id="60690798"/>
    <dbReference type="KEGG" id="dac:Daci_0391"/>
    <dbReference type="eggNOG" id="COG0087">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_044142_4_1_4"/>
    <dbReference type="OMA" id="KRMAGRY"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005840">
        <property type="term" value="C:ribosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0019843">
        <property type="term" value="F:rRNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003735">
        <property type="term" value="F:structural constituent of ribosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006412">
        <property type="term" value="P:translation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01325_B">
        <property type="entry name" value="Ribosomal_L3_B"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000597">
        <property type="entry name" value="Ribosomal_L3"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019927">
        <property type="entry name" value="Ribosomal_L3_bac/org-type"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019926">
        <property type="entry name" value="Ribosomal_L3_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009000">
        <property type="entry name" value="Transl_B-barrel_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11229">
        <property type="entry name" value="PTHR11229"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00297">
        <property type="entry name" value="Ribosomal_L3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50447">
        <property type="entry name" value="SSF50447"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR03625">
        <property type="entry name" value="L3_bact"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00474">
        <property type="entry name" value="RIBOSOMAL_L3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword id="KW-0488">Methylation</keyword>
    <keyword id="KW-1185">Reference proteome</keyword>
    <keyword id="KW-0687">Ribonucleoprotein</keyword>
    <keyword id="KW-0689">Ribosomal protein</keyword>
    <keyword id="KW-0694">RNA-binding</keyword>
    <keyword id="KW-0699">rRNA-binding</keyword>
    <feature type="chain" id="PRO_1000141854" description="50S ribosomal protein L3">
        <location>
            <begin position="1"/>
            <end position="224"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="137"/>
            <end position="160"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="2">
        <location>
            <begin position="140"/>
            <end position="154"/>
        </location>
    </feature>
    <feature type="modified residue" description="N5-methylglutamine" evidence="1">
        <location>
            <position position="158"/>
        </location>
    </feature>
    <evidence type="ECO:0000255" key="1">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01325"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <sequence length="224" mass="23619" checksum="EA50C3D5EDE12C40" modified="2008-01-15" version="1">MSLSNSLGLLGRKVGMMRLFTDDGDAVPVTVVDVSNNRVTQVKTQENDGYVALQVTFGSRKASRVTKPEAGHLAKAGVEAGEVMGEFRVTEETAGKYAAGSVLPVAELFSVGQKVDVQGTSIGKGFAGTIKRHNFRSQRASHGNSRSHNVPGSISMAQDPGRVFPGKKMTGHMGDETITTQNLDVVRIDEARQLLLIKGAVPGSKGGFVTVRPAIKAKASKGAN</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="56" xmlns="http://uniprot.org/uniprot">
    <accession>A9BPS9</accession>
    <name>A9BPS9_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">GCN5-related N-acetyltransferase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_0402</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX33048.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_0402"/>
    <dbReference type="PRIDE" id="A9BPS9"/>
    <dbReference type="EnsemblBacteria" id="ABX33048">
        <property type="protein sequence ID" value="ABX33048"/>
        <property type="gene ID" value="Daci_0402"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_0402"/>
    <dbReference type="eggNOG" id="COG0456">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_013985_11_0_4"/>
    <dbReference type="OMA" id="GCCALRP"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008080">
        <property type="term" value="F:N-acetyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016181">
        <property type="entry name" value="Acyl_CoA_acyltransferase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000182">
        <property type="entry name" value="GNAT_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00583">
        <property type="entry name" value="Acetyltransf_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55729">
        <property type="entry name" value="SSF55729"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51186">
        <property type="entry name" value="GNAT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="N-acetyltransferase" evidence="1">
        <location>
            <begin position="40"/>
            <end position="192"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS51186"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX33048.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="196" mass="21524" checksum="066D7D2AB78C90E8" modified="2008-01-15" version="1">MVGAAAGGCFLTAWPDVASLPLHCVFRRFSQVPVDKPAVALLAPNPLEDMDEVRQIFQEYAASLDVDLQFQDFEAEIADLPGDYASPRGHILLAKVDGAVAGCCALRPLDNCDYANAAEMKRLFVRKAFRGFGLGRQLAEAMLDVARQAGYDHVLLDTLDDMESARALYTDLGFQEIPPYYHNPIAGAHYLKADIF</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="95" xmlns="http://uniprot.org/uniprot">
    <accession>A9BPX9</accession>
    <name>A9BPX9_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="5">Sensor protein</fullName>
            <ecNumber evidence="5">2.7.13.3</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="8" type="ordered locus">Daci_0452</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="9" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="5">Member of a two-component regulatory system.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>ATP + protein L-histidine = ADP + protein N-phospho-L-histidine.</text>
            <dbReference type="EC" id="2.7.13.3"/>
        </reaction>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="5">Cell inner membrane</location>
        </subcellularLocation>
    </comment>
    <dbReference type="EC" id="2.7.13.3" evidence="5"/>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX33098.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012202384.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_0452"/>
    <dbReference type="PRIDE" id="A9BPX9"/>
    <dbReference type="EnsemblBacteria" id="ABX33098">
        <property type="protein sequence ID" value="ABX33098"/>
        <property type="gene ID" value="Daci_0452"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_0452"/>
    <dbReference type="eggNOG" id="COG5002">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_000445_89_6_4"/>
    <dbReference type="OMA" id="LDITHHQ"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000155">
        <property type="term" value="F:phosphorelay sensor kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd00082">
        <property type="entry name" value="HisKA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.565.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006290">
        <property type="entry name" value="CztS_silS_copS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003660">
        <property type="entry name" value="HAMP_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003594">
        <property type="entry name" value="HATPase_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036890">
        <property type="entry name" value="HATPase_C_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005467">
        <property type="entry name" value="His_kinase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003661">
        <property type="entry name" value="HisK_dim/P"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036097">
        <property type="entry name" value="HisK_dim/P_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004358">
        <property type="entry name" value="Sig_transdc_His_kin-like_C"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00672">
        <property type="entry name" value="HAMP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02518">
        <property type="entry name" value="HATPase_c"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00512">
        <property type="entry name" value="HisKA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00344">
        <property type="entry name" value="BCTRLSENSOR"/>
    </dbReference>
    <dbReference type="SMART" id="SM00304">
        <property type="entry name" value="HAMP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00387">
        <property type="entry name" value="HATPase_c"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00388">
        <property type="entry name" value="HisKA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47384">
        <property type="entry name" value="SSF47384"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55874">
        <property type="entry name" value="SSF55874"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01386">
        <property type="entry name" value="cztS_silS_copS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50885">
        <property type="entry name" value="HAMP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50109">
        <property type="entry name" value="HIS_KIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="5" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="5" id="KW-0997">Cell inner membrane</keyword>
    <keyword evidence="5" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="4 5 8" id="KW-0418">Kinase</keyword>
    <keyword evidence="5" id="KW-0472">Membrane</keyword>
    <keyword evidence="5" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="2" id="KW-0597">Phosphoprotein</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 5" id="KW-0808">Transferase</keyword>
    <keyword evidence="5" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="5" id="KW-1133">Transmembrane helix</keyword>
    <keyword evidence="5" id="KW-0902">Two-component regulatory system</keyword>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="20"/>
            <end position="42"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="181"/>
            <end position="201"/>
        </location>
    </feature>
    <feature type="domain" description="HAMP" evidence="7">
        <location>
            <begin position="202"/>
            <end position="255"/>
        </location>
    </feature>
    <feature type="domain" description="Histidine kinase" evidence="6">
        <location>
            <begin position="263"/>
            <end position="477"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00000085"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022553"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022777"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="RuleBase" id="RU364088"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="PROSITE" id="PS50109"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="PROSITE" id="PS50885"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="ABX33098.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="477" mass="53494" checksum="C27B486DC2CE56E4" modified="2008-01-15" version="1">MRLMMTSRHKPRRSRPASLALRVTALVGIATTLVFLAFNWVVVRSLEHHFAQQDAHELDAVVTALAEPLRQIANDMDKDELRQHLANAVAGHHGMTYGVYDRPGNTIYATPGPDLSKLASSKKLVNRITADDLTVWQENQRSYRGVALQLPADDSAAPGYRIVAAMDIGFHLDFLAEFKRMLWWATCLVLCIALGVAWLAVQWGHLPIRKVNEEIRTIRSSKLDVRLDPLDVPIELAELVVAFNDMLARIEEGFVRLSHFSADIAHELRTPVTNLITQSHVALGQPRSAEEYREILYSNLEEFDRMSRMIGDMLFLAQTENDPRNLRLGEIDLAELIRGLFDYFEALAEDRNITLYAKGAAEPIRADREMLLRALNNLLSNAIRHTPYGSRITVALAQDERWTTISVENPGERISEADLPKLFDRFFRVDPARQRKNAGAGLGLAIVKSIAEAHGGHVQATSSDTATKFDLTLPRIA</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-01-19" version="64" xmlns="http://uniprot.org/uniprot">
    <accession>A9BQ80</accession>
    <name>A9BQ80_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="3 9">Flagellar biosynthetic protein FliQ</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="9" type="primary">fliQ</name>
        <name evidence="10" type="ordered locus">Daci_0649</name>
    </gene>
    <organism evidence="10 11">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="10 11" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="11">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="11" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="11">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="9">Role in flagellar biosynthesis.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="9">Cell membrane</location>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="9">Bacterial flagellum basal body</location>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2 9">Belongs to the FliQ/MopD/SpaQ family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX33295.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012202581.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_0649"/>
    <dbReference type="EnsemblBacteria" id="ABX33295">
        <property type="protein sequence ID" value="ABX33295"/>
        <property type="gene ID" value="Daci_0649"/>
    </dbReference>
    <dbReference type="GeneID" id="60690990"/>
    <dbReference type="KEGG" id="dac:Daci_0649"/>
    <dbReference type="eggNOG" id="COG1987">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_164516_2_0_4"/>
    <dbReference type="OMA" id="TMPWMLN"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009425">
        <property type="term" value="C:bacterial-type flagellum basal body"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0044780">
        <property type="term" value="P:bacterial-type flagellum assembly"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009306">
        <property type="term" value="P:protein secretion"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002191">
        <property type="entry name" value="Bac_export_3"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006305">
        <property type="entry name" value="FliQ"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR34040">
        <property type="entry name" value="PTHR34040"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01313">
        <property type="entry name" value="Bac_export_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF004669">
        <property type="entry name" value="FliQ"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00952">
        <property type="entry name" value="TYPE3IMQPROT"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01402">
        <property type="entry name" value="fliQ"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="8 9" id="KW-0975">Bacterial flagellum</keyword>
    <keyword evidence="4 9" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="10" id="KW-0966">Cell projection</keyword>
    <keyword evidence="10" id="KW-0969">Cilium</keyword>
    <keyword evidence="10" id="KW-0282">Flagellum</keyword>
    <keyword evidence="7 9" id="KW-0472">Membrane</keyword>
    <keyword evidence="11" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="5 9" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="6 9" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="9">
        <location>
            <begin position="12"/>
            <end position="35"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="9">
        <location>
            <begin position="55"/>
            <end position="77"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00006156"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00021718"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00023143"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="RuleBase" id="RU364090"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="EMBL" id="ABX33295.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="89" mass="9544" checksum="364D2A137891027A" modified="2008-01-15" version="1">MTSQYVLTFGREALTLLLMISMPVLGVVLAVGLAVSVFQAVTQVHEATLAFVPKLISAVLVFAIAGPWMLSTLVDFIRRTIETIPQAVG</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="41" xmlns="http://uniprot.org/uniprot">
    <accession>A9BQ94</accession>
    <name>A9BQ94_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Daci_0858</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="2" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX33504.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012202790.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_0858"/>
    <dbReference type="PRIDE" id="A9BQ94"/>
    <dbReference type="EnsemblBacteria" id="ABX33504">
        <property type="protein sequence ID" value="ABX33504"/>
        <property type="gene ID" value="Daci_0858"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_0858"/>
    <dbReference type="eggNOG" id="ENOG5032QXH">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_1703478_0_0_4"/>
    <dbReference type="OMA" id="WVSHSAR"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ABX33504.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="152" mass="16287" checksum="F561C69D149FD86F" modified="2008-01-15" version="1">MNPIIVYVDDASYALPLVQALAASPQAQASHWLLVACAPRITHRVSKWVSHSARESWRGKWADKLFAQLLPVFGDSAGRITPVLAKGPLAELVAQLQQEHGAAQIVDARRPKQEATAPAVAPAAPLGRRWNLPGTLAAIGALMGLVFEEAMI</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="53" xmlns="http://uniprot.org/uniprot">
    <accession>A9BQA1</accession>
    <name>A9BQA1_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">FHA domain containing protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_0865</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX33511.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012202797.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_0865"/>
    <dbReference type="PRIDE" id="A9BQA1"/>
    <dbReference type="EnsemblBacteria" id="ABX33511">
        <property type="protein sequence ID" value="ABX33511"/>
        <property type="gene ID" value="Daci_0865"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_0865"/>
    <dbReference type="eggNOG" id="COG1716">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_102503_0_0_4"/>
    <dbReference type="OMA" id="FITHVEG"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="CDD" id="cd00060">
        <property type="entry name" value="FHA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000253">
        <property type="entry name" value="FHA_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008984">
        <property type="entry name" value="SMAD_FHA_dom_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00498">
        <property type="entry name" value="FHA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00240">
        <property type="entry name" value="FHA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF49879">
        <property type="entry name" value="SSF49879"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50006">
        <property type="entry name" value="FHA_DOMAIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="FHA" evidence="1">
        <location>
            <begin position="23"/>
            <end position="72"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS50006"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX33511.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="237" mass="25154" checksum="F84A6C0BB42DB1F7" modified="2008-01-15" version="1">MPTLVISIDGAVIKEVQLAKERTTLGRRPYNDIVIDNLAVSGEHAVLSIVDGTVIIEDLRSTNGTYVNGQPILRQTLNHGDLLDIGKYKIRFVQQQVSASSRSALAAIAAAVEATRPAPLAEADLPSQFSQETPSGFDHTLPPSMAGLATRQAAIRMLNGNAAGREVPLVKVVTTLGKPGVAVASITQKHHGFVLAQLEGDSPSLKLNGQEIGRRAMPLQHGDTVELAGTQMQFLVA</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="57" xmlns="http://uniprot.org/uniprot">
    <accession>A9BQD2</accession>
    <name>A9BQD2_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Glyoxalase/bleomycin resistance protein/dioxygenase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_0896</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX33542.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012202828.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_0896"/>
    <dbReference type="PRIDE" id="A9BQD2"/>
    <dbReference type="EnsemblBacteria" id="ABX33542">
        <property type="protein sequence ID" value="ABX33542"/>
        <property type="gene ID" value="Daci_0896"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_0896"/>
    <dbReference type="eggNOG" id="COG0346">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_046006_6_0_4"/>
    <dbReference type="OMA" id="MFSHVML"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051213">
        <property type="term" value="F:dioxygenase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.10.180.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029068">
        <property type="entry name" value="Glyas_Bleomycin-R_OHBP_Dase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004360">
        <property type="entry name" value="Glyas_Fos-R_dOase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037523">
        <property type="entry name" value="VOC"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00903">
        <property type="entry name" value="Glyoxalase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54593">
        <property type="entry name" value="SSF54593"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51819">
        <property type="entry name" value="VOC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0223">Dioxygenase</keyword>
    <keyword evidence="2" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="VOC" evidence="1">
        <location>
            <begin position="1"/>
            <end position="124"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS51819"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX33542.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="128" mass="13414" checksum="947F17C7C1AEFF81" modified="2008-01-15" version="1">MFSHVMVGVNDLEKSKQFYDAFLGALGIAPGMANKNRYFYRSAGGTFAISTPINGEAACHGNGATIGFATQSPEQADAAHAAAVAAGGVTCEDPPGWREASPGGRLYLAYVRDLDGNKLCLLHRPPKA</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="54" xmlns="http://uniprot.org/uniprot">
    <accession>A9BQM9</accession>
    <name>A9BQM9_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Thioesterase superfamily protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_0084</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX32731.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012202024.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_0084"/>
    <dbReference type="PRIDE" id="A9BQM9"/>
    <dbReference type="EnsemblBacteria" id="ABX32731">
        <property type="protein sequence ID" value="ABX32731"/>
        <property type="gene ID" value="Daci_0084"/>
    </dbReference>
    <dbReference type="GeneID" id="60690488"/>
    <dbReference type="KEGG" id="dac:Daci_0084"/>
    <dbReference type="eggNOG" id="COG2050">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_089876_13_1_4"/>
    <dbReference type="OMA" id="TTQVWQI"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029069">
        <property type="entry name" value="HotDog_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003736">
        <property type="entry name" value="PAAI_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006683">
        <property type="entry name" value="Thioestr_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03061">
        <property type="entry name" value="4HBT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54637">
        <property type="entry name" value="SSF54637"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00369">
        <property type="entry name" value="unchar_dom_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="4HBT" evidence="1">
        <location>
            <begin position="51"/>
            <end position="128"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF03061"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX32731.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="157" mass="16850" checksum="F8AA6C9EA903FB64" modified="2008-01-15" version="1">MPIWKRSFTLEDITSLSADTAVSHLGIEFTEIGDDFLRGRVHVDQRTCQPYGILHGGVNVVLAETLGSVAAACSIPEGWRSVGLNVSANHVRAARQGWVTGTARPVHLGQTTHVWAIELHDETGRLTCTCSLTMALLPPTHAQNVKLAAQPPVAAQP</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="50" xmlns="http://uniprot.org/uniprot">
    <accession>A9BQQ4</accession>
    <name>A9BQQ4_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="3">UspA domain protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Daci_0110</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="4" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the universal stress protein A family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX32756.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012202049.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_0110"/>
    <dbReference type="PRIDE" id="A9BQQ4"/>
    <dbReference type="EnsemblBacteria" id="ABX32756">
        <property type="protein sequence ID" value="ABX32756"/>
        <property type="gene ID" value="Daci_0110"/>
    </dbReference>
    <dbReference type="GeneID" id="60690517"/>
    <dbReference type="KEGG" id="dac:Daci_0110"/>
    <dbReference type="eggNOG" id="COG0589">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_049301_14_0_4"/>
    <dbReference type="OMA" id="WHREQND"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.620">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014729">
        <property type="entry name" value="Rossmann-like_a/b/a_fold"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006015">
        <property type="entry name" value="Universal_stress_UspA"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006016">
        <property type="entry name" value="UspA"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00582">
        <property type="entry name" value="Usp"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR01438">
        <property type="entry name" value="UNVRSLSTRESS"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Usp" evidence="2">
        <location>
            <begin position="2"/>
            <end position="140"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00008791"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF00582"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ABX32756.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="140" mass="14843" checksum="07EA27A488ED00E9" modified="2008-01-15" version="1">MNILLAVDGSPYTQKMLAYLTSHPEILGSAHSYSAITVQPQLPARARAALGKEVVDEYYAEESTKVLDPVCSYLAEHGVQATRLSKVGPVADSIIKAAEEGKFDLLVMGTHGHGALGRLVMGSVSTQVLAGSQVPVLLIR</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2021-06-02" version="52" xmlns="http://uniprot.org/uniprot">
    <accession>A9BQS5</accession>
    <name>A9BQS5_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">EamA domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Daci_0131</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="4" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX32777.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012202070.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_0131"/>
    <dbReference type="EnsemblBacteria" id="ABX32777">
        <property type="protein sequence ID" value="ABX32777"/>
        <property type="gene ID" value="Daci_0131"/>
    </dbReference>
    <dbReference type="GeneID" id="60690537"/>
    <dbReference type="KEGG" id="dac:Daci_0131"/>
    <dbReference type="eggNOG" id="COG2076">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_131462_3_2_4"/>
    <dbReference type="OMA" id="CYVAEFL"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000620">
        <property type="entry name" value="EamA_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00892">
        <property type="entry name" value="EamA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="51"/>
            <end position="73"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="79"/>
            <end position="97"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="104"/>
            <end position="121"/>
        </location>
    </feature>
    <feature type="domain" description="EamA" evidence="2">
        <location>
            <begin position="48"/>
            <end position="119"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF00892"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ABX32777.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="122" mass="12972" checksum="8CF04713CFD0E82F" modified="2008-01-15" version="1">MGSDLSPLVITLWVLNVLVDSGGQLAFKAAASQPGDLDGLARWRFMASRPWLWLGVGCYVAEFVLWLAFLSLVPLSEGVLLGSINIVAIMIAGRLLFAEKLAPMRVAGIVLVSIGVAIVGLH</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="68" xmlns="http://uniprot.org/uniprot">
    <accession>A9BQS8</accession>
    <name>A9BQS8_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Cyclopropane-fatty-acyl-phospholipid synthase</fullName>
            <ecNumber evidence="3">2.1.1.79</ecNumber>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Daci_0134</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="4" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the CFA/CMAS family.</text>
    </comment>
    <dbReference type="EC" id="2.1.1.79" evidence="3"/>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX32780.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012202073.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_0134"/>
    <dbReference type="EnsemblBacteria" id="ABX32780">
        <property type="protein sequence ID" value="ABX32780"/>
        <property type="gene ID" value="Daci_0134"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_0134"/>
    <dbReference type="eggNOG" id="COG2230">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_026434_6_1_4"/>
    <dbReference type="OMA" id="EMMYSCG"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008825">
        <property type="term" value="F:cyclopropane-fatty-acyl-phospholipid synthase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008610">
        <property type="term" value="P:lipid biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0032259">
        <property type="term" value="P:methylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.150">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003333">
        <property type="entry name" value="Mycolic_cyclopropane_synthase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029063">
        <property type="entry name" value="SAM-dependent_MTases_sf"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF003085">
        <property type="entry name" value="CMAS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53335">
        <property type="entry name" value="SSF53335"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-0489">Methyltransferase</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0808">Transferase</keyword>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="405"/>
            <end position="440"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00010815"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ABX32780.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="440" mass="50455" checksum="36D87529E0BA287D" modified="2008-01-15" version="1">MIDRLTERLLQRSFTPLVREGLLEICLPWGRMLAFGDGGQPQARIRFTDRRALWALMRDPDLNLGEMFMQQRLVVERGSIYDVLELVLRNARNLPVPASVRLLDAWRMRLRPLLQHNRRGKARANVAHHYDLDDRLYRLFLDGERQYSCAYFEHGDESLEQAQRAKMRHIAAKLLVEPGHRVLDIGCGWGGLSRYLAEVAGAGHVTGVTLSGEQLAGARQRAGQSPCADRLSYRLEDYRDTRGTFDRIVSVGMFEHVGTRFHDAFFRQCRELLSDDGVMLLHFIGNSDVPDFNNPWIERYIFPGGHIPSLSEFTPAIERSGLVVTDIEVLRLHYARTLRLWRERFMARRDEAAALYDERFCRMWEFYLSMSEAAFRYQDIAIFQVQLARRQEAVPLTRDYVAERSQALRGREPPPGATTQPGATQAAAVSQARRAAPPAD</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="46" xmlns="http://uniprot.org/uniprot">
    <accession>A9BR06</accession>
    <name>A9BR06_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_0315</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX32961.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012202254.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_0315"/>
    <dbReference type="PRIDE" id="A9BR06"/>
    <dbReference type="EnsemblBacteria" id="ABX32961">
        <property type="protein sequence ID" value="ABX32961"/>
        <property type="gene ID" value="Daci_0315"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_0315"/>
    <dbReference type="eggNOG" id="ENOG5031HYC">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_148090_0_0_4"/>
    <dbReference type="OMA" id="SHVTCEF"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="29"/>
            <end position="48"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX32961.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="145" mass="15994" checksum="46EF49D7FF7C769C" modified="2008-01-15" version="1">MNLRNILIPLGLLVLLVAAHQSYGWMGVVAVGGGIMMWLLLHFTRLMSIMRKAADRPMGYVGSAVMLNVKLKPKVSLMHVVAMTRSLGERLSEEGQQPEIYRWTDGTQSHVTCEFKSGRLMKWTLVRPTPEPEPASAAPEAAPAP</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2021-06-02" version="45" xmlns="http://uniprot.org/uniprot">
    <accession>A9BR51</accession>
    <name>A9BR51_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="6">DUF1232 domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="7" type="ordered locus">Daci_0463</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="8" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX33109.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012202395.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_0463"/>
    <dbReference type="EnsemblBacteria" id="ABX33109">
        <property type="protein sequence ID" value="ABX33109"/>
        <property type="gene ID" value="Daci_0463"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_0463"/>
    <dbReference type="eggNOG" id="COG3339">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_139031_0_0_4"/>
    <dbReference type="OMA" id="WKLFKHP"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010652">
        <property type="entry name" value="DUF1232"/>
    </dbReference>
    <dbReference type="Pfam" id="PF06803">
        <property type="entry name" value="DUF1232"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4 5" id="KW-0472">Membrane</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 5" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="3 5" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="106"/>
            <end position="126"/>
        </location>
    </feature>
    <feature type="domain" description="DUF1232" evidence="6">
        <location>
            <begin position="34"/>
            <end position="69"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="Pfam" id="PF06803"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="ABX33109.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="130" mass="14598" checksum="9606406B5269C6A2" modified="2008-01-15" version="1">MSIGVTLKAWARRIKRDGVTLWFAGKHPGTPWYAKALGLFVVAYALSPIDLIPDFIPVLGYVDDVILLPVLIWLTVKLLPSDVLAQCRIQADEWMLAEGAKPRSRFGAVMIVALWLVMGVALWFWLMPHL</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="64" xmlns="http://uniprot.org/uniprot">
    <accession>A9BR62</accession>
    <name>A9BR62_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Efflux transporter, RND family, MFP subunit</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ordered locus">Daci_0474</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="5" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX33120.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012202406.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_0474"/>
    <dbReference type="PRIDE" id="A9BR62"/>
    <dbReference type="EnsemblBacteria" id="ABX33120">
        <property type="protein sequence ID" value="ABX33120"/>
        <property type="gene ID" value="Daci_0474"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_0474"/>
    <dbReference type="eggNOG" id="COG0845">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="eggNOG" id="COG5569">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_018816_13_1_4"/>
    <dbReference type="OMA" id="WESHVEY"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016020">
        <property type="term" value="C:membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0022857">
        <property type="term" value="F:transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.50.320">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR021647">
        <property type="entry name" value="CusF_Ec"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR042230">
        <property type="entry name" value="CusF_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR032317">
        <property type="entry name" value="HlyD_D23"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006143">
        <property type="entry name" value="RND_pump_MFP"/>
    </dbReference>
    <dbReference type="Pfam" id="PF11604">
        <property type="entry name" value="CusF_Ec"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF16576">
        <property type="entry name" value="HlyD_D23"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01730">
        <property type="entry name" value="RND_mfp"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HlyD_D23" evidence="3">
        <location>
            <begin position="149"/>
            <end position="360"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="35"/>
            <end position="65"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00009477"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF16576"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="ABX33120.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="545" mass="57063" checksum="A8FB5056F86CC81E" modified="2008-01-15" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="80" xmlns="http://uniprot.org/uniprot">
    <accession>A9BR69</accession>
    <name>A9BR69_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="5 14">Undecaprenyl-diphosphatase</fullName>
            <ecNumber evidence="4 14">3.6.1.27</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="13 14">Bacitracin resistance protein</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="12 14">Undecaprenyl pyrophosphate phosphatase</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="14" type="primary">uppP</name>
        <name evidence="15" type="ordered locus">Daci_0481</name>
    </gene>
    <organism evidence="15 16">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="15 16" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="16">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="16" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="16">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="14">Catalyzes the dephosphorylation of undecaprenyl diphosphate (UPP). Confers resistance to bacitracin.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1 14">
            <text>di-trans,octa-cis-undecaprenyl diphosphate + H2O = di-trans,octa-cis-undecaprenyl phosphate + H(+) + phosphate</text>
            <dbReference type="Rhea" id="RHEA:28094"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:43474"/>
            <dbReference type="ChEBI" id="CHEBI:58405"/>
            <dbReference type="ChEBI" id="CHEBI:60392"/>
            <dbReference type="EC" id="3.6.1.27"/>
        </reaction>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="14">Cell inner membrane</location>
            <topology evidence="14">Multi-pass membrane protein</topology>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="2">Membrane</location>
            <topology evidence="2">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="miscellaneous">
        <text evidence="14">Bacitracin is thought to be involved in the inhibition of peptidoglycan synthesis by sequestering undecaprenyl diphosphate, thereby reducing the pool of lipid carrier available.</text>
    </comment>
    <comment type="similarity">
        <text evidence="3 14">Belongs to the UppP family.</text>
    </comment>
    <dbReference type="EC" id="3.6.1.27" evidence="4 14"/>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX33127.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012202413.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_0481"/>
    <dbReference type="PRIDE" id="A9BR69"/>
    <dbReference type="EnsemblBacteria" id="ABX33127">
        <property type="protein sequence ID" value="ABX33127"/>
        <property type="gene ID" value="Daci_0481"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_0481"/>
    <dbReference type="eggNOG" id="COG1968">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_060296_2_0_4"/>
    <dbReference type="OMA" id="PIMMGAS"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016301">
        <property type="term" value="F:kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0050380">
        <property type="term" value="F:undecaprenyl-diphosphatase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0071555">
        <property type="term" value="P:cell wall organization"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016311">
        <property type="term" value="P:dephosphorylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009252">
        <property type="term" value="P:peptidoglycan biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016310">
        <property type="term" value="P:phosphorylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008360">
        <property type="term" value="P:regulation of cell shape"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046677">
        <property type="term" value="P:response to antibiotic"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01006">
        <property type="entry name" value="Undec_diphosphatase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003824">
        <property type="entry name" value="UppP"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30622">
        <property type="entry name" value="PTHR30622"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02673">
        <property type="entry name" value="BacA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00753">
        <property type="entry name" value="undec_PP_bacA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="11 14" id="KW-0046">Antibiotic resistance</keyword>
    <keyword evidence="14" id="KW-0997">Cell inner membrane</keyword>
    <keyword evidence="6 14" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="14" id="KW-0133">Cell shape</keyword>
    <keyword evidence="14" id="KW-0961">Cell wall biogenesis/degradation</keyword>
    <keyword evidence="8 14 15" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="15" id="KW-0418">Kinase</keyword>
    <keyword evidence="10 14" id="KW-0472">Membrane</keyword>
    <keyword evidence="14" id="KW-0573">Peptidoglycan synthesis</keyword>
    <keyword evidence="16" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="15" id="KW-0808">Transferase</keyword>
    <keyword evidence="7 14" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="9 14" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="14">
        <location>
            <begin position="21"/>
            <end position="41"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="14">
        <location>
            <begin position="47"/>
            <end position="64"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="14">
        <location>
            <begin position="84"/>
            <end position="103"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="14">
        <location>
            <begin position="109"/>
            <end position="130"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="14">
        <location>
            <begin position="188"/>
            <end position="206"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="14">
        <location>
            <begin position="218"/>
            <end position="239"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="14">
        <location>
            <begin position="246"/>
            <end position="266"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00000759"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00010621"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00012374"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00021581"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="ARBA" id="ARBA00023251"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="12">
        <source>
            <dbReference type="ARBA" id="ARBA00032707"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="13">
        <source>
            <dbReference type="ARBA" id="ARBA00032932"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="14">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01006"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="15">
        <source>
            <dbReference type="EMBL" id="ABX33127.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="16">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="267" mass="28750" checksum="B7BE234ABCEB65D2" modified="2008-01-15" version="1">MHAELVLKTLMMGVVEGITEFLPVSSTGHLILAGNALSFLAKEKRDVFEVFIQFGAMLAVIWEYRARLASVVVSAHADQGSRRFLVNLAIAFMPAAVLGLLIGSHVQRLLFSPGPVAVALVVGGIAILWAERRPVQVKAERAEQISRIDALKIGFVQCLALWPGTSRSGATIIGGLWFGASRQAATEFSFFLGIPILGAASVYNLFKHWGALSSDDIGVFAMGFIASFAFALLAIRLLMRYLTGHGFGVFAWYRIALGTLILVAVAT</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="46" xmlns="http://uniprot.org/uniprot">
    <accession>A9BRC9</accession>
    <name>A9BRC9_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_0541</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX33187.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_0541"/>
    <dbReference type="PRIDE" id="A9BRC9"/>
    <dbReference type="EnsemblBacteria" id="ABX33187">
        <property type="protein sequence ID" value="ABX33187"/>
        <property type="gene ID" value="Daci_0541"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_0541"/>
    <dbReference type="eggNOG" id="COG4727">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_081299_0_0_4"/>
    <dbReference type="OMA" id="YQQSNQW"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014547">
        <property type="entry name" value="UCP028477"/>
    </dbReference>
    <dbReference type="Pfam" id="PF09916">
        <property type="entry name" value="DUF2145"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF028477">
        <property type="entry name" value="UCP028477"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="1">
        <location>
            <begin position="1"/>
            <end position="29"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5002733018" evidence="1">
        <location>
            <begin position="30"/>
            <end position="272"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX33187.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="272" mass="30298" checksum="55C7310617B97255" modified="2008-01-15" version="1">MKPSLSPSPVARAACLVLLLAAALGTAHAGRSCEDKPLTPQSLQKGLDLAQRTSQALDAEYAKNGTRVVLLARVGQDLSKYDLHYSHYGWAYRTPEGPWRVAHKLNECGTAGGHVYRQGLGEFFLDDLWRYEAGVQVPTPAVQQALWTFLTQPQTVLRLQHEPYSMVSYAWGQRYQQSNQWATETLAAAMEPATVQRREQAQAWLQFKGYEPGVLVIRALSRLGGRVTAANIAFDDHPNDKRYASRIETVTVESVTQWLQRSQLAGPVRVLP</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="64" xmlns="http://uniprot.org/uniprot">
    <accession>A9BRM6</accession>
    <name>A9BRM6_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">CheW protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_0741</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX33387.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012202673.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_0741"/>
    <dbReference type="PRIDE" id="A9BRM6"/>
    <dbReference type="EnsemblBacteria" id="ABX33387">
        <property type="protein sequence ID" value="ABX33387"/>
        <property type="gene ID" value="Daci_0741"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_0741"/>
    <dbReference type="eggNOG" id="COG0835">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_048995_1_0_4"/>
    <dbReference type="OMA" id="ANGPAYF"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006935">
        <property type="term" value="P:chemotaxis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0007165">
        <property type="term" value="P:signal transduction"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR039315">
        <property type="entry name" value="CheW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036061">
        <property type="entry name" value="CheW-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002545">
        <property type="entry name" value="CheW-lke_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR22617">
        <property type="entry name" value="PTHR22617"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01584">
        <property type="entry name" value="CheW"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00260">
        <property type="entry name" value="CheW"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50341">
        <property type="entry name" value="SSF50341"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50851">
        <property type="entry name" value="CHEW"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="CheW-like" evidence="1">
        <location>
            <begin position="10"/>
            <end position="150"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS50851"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX33387.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="160" mass="17491" checksum="EA720D4F759084A3" modified="2008-01-15" version="1">MSHTLKTETTRQWLSFRVDDEEFGIDLLQVQEIRSYESPMRIANGPAYFNGVLELRGEVIPVIDLRLRLGLAHKQYDACTVTIMLRLPGGVTGMVVEGVTDVVTLMPQDLRAVPDMGGGLVNDCLLALGVLDERSLLLIDAHRLLSPATATAALPYCAAN</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="73" xmlns="http://uniprot.org/uniprot">
    <accession>A9BRN5</accession>
    <name>A9BRN5_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Short-chain dehydrogenase/reductase SDR</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Daci_0956</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="2" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX33602.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012202888.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_0956"/>
    <dbReference type="PRIDE" id="A9BRN5"/>
    <dbReference type="EnsemblBacteria" id="ABX33602">
        <property type="protein sequence ID" value="ABX33602"/>
        <property type="gene ID" value="Daci_0956"/>
    </dbReference>
    <dbReference type="GeneID" id="60685520"/>
    <dbReference type="KEGG" id="dac:Daci_0956"/>
    <dbReference type="eggNOG" id="COG1028">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_010194_1_3_4"/>
    <dbReference type="OMA" id="NFPYFVA"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016491">
        <property type="term" value="F:oxidoreductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036291">
        <property type="entry name" value="NAD(P)-bd_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020904">
        <property type="entry name" value="Sc_DH/Rdtase_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002347">
        <property type="entry name" value="SDR_fam"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00081">
        <property type="entry name" value="GDHRDH"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00080">
        <property type="entry name" value="SDRFAMILY"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51735">
        <property type="entry name" value="SSF51735"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00061">
        <property type="entry name" value="ADH_SHORT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ABX33602.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="256" mass="27137" checksum="933A185B316BDB8B" modified="2008-01-15" version="1">MNTTPSTGQLAGRRILVTGSARGLGFAFAKAFCEQGARVAMADLREELLAESVARLRAQGFEAHGFGLDAGNPESIERCAQQAVQALGGLDGLVNNAAVTDSGGKGMDDIDLDKWDQVMNVNVRGVWLMTRACRAALRDSGRGAIVNLASDTAMWGAPNLMAYVASKGAVMAMTRSMARELGADGITINAVAPGLVLVEATEYVPEHRHRLYIDQRALQREQRPEDVSGAVAYALSDGARFVTGQVLPVNGGFVMN</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="90" xmlns="http://uniprot.org/uniprot">
    <accession>A9BRU5</accession>
    <name>A9BRU5_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="8">4-hydroxybenzoate octaprenyltransferase</fullName>
            <ecNumber evidence="8">2.5.1.39</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="8">4-HB polyprenyltransferase</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="8" type="primary">ubiA</name>
        <name evidence="9" type="ordered locus">Daci_1016</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="9 10" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="10" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="8">Catalyzes the prenylation of para-hydroxybenzoate (PHB) with an all-trans polyprenyl group. Mediates the second step in the final reaction sequence of ubiquinone-8 (UQ-8) biosynthesis, which is the condensation of the polyisoprenoid side chain with PHB, generating the first membrane-bound Q intermediate 3-octaprenyl-4-hydroxybenzoate.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="8">
            <text>4-hydroxybenzoate + all-trans-octaprenyl diphosphate = 4-hydroxy-3-all-trans-octaprenylbenzoate + diphosphate</text>
            <dbReference type="Rhea" id="RHEA:27782"/>
            <dbReference type="ChEBI" id="CHEBI:1617"/>
            <dbReference type="ChEBI" id="CHEBI:17879"/>
            <dbReference type="ChEBI" id="CHEBI:33019"/>
            <dbReference type="ChEBI" id="CHEBI:57711"/>
            <dbReference type="EC" id="2.5.1.39"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="1 8">
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </cofactor>
    </comment>
    <comment type="pathway">
        <text evidence="8">Cofactor biosynthesis; ubiquinone biosynthesis.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="8">Cell inner membrane</location>
            <topology evidence="8">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="8">Belongs to the UbiA prenyltransferase family.</text>
    </comment>
    <dbReference type="EC" id="2.5.1.39" evidence="8"/>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX33662.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_1016"/>
    <dbReference type="PRIDE" id="A9BRU5"/>
    <dbReference type="EnsemblBacteria" id="ABX33662">
        <property type="protein sequence ID" value="ABX33662"/>
        <property type="gene ID" value="Daci_1016"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_1016"/>
    <dbReference type="eggNOG" id="COG0382">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_034879_1_0_4"/>
    <dbReference type="OMA" id="MVVYPYG"/>
    <dbReference type="UniPathway" id="UPA00232"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0002083">
        <property type="term" value="F:4-hydroxybenzoate decaprenyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0047293">
        <property type="term" value="F:4-hydroxybenzoate nonaprenyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008412">
        <property type="term" value="F:4-hydroxybenzoate octaprenyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006744">
        <property type="term" value="P:ubiquinone biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd13959">
        <property type="entry name" value="PT_UbiA_COQ2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.357.140">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01635">
        <property type="entry name" value="UbiA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006370">
        <property type="entry name" value="HB_polyprenyltransferase-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR039653">
        <property type="entry name" value="Prenyltransferase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000537">
        <property type="entry name" value="UbiA_prenyltransferase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR030470">
        <property type="entry name" value="UbiA_prenylTrfase_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR044878">
        <property type="entry name" value="UbiA_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11048">
        <property type="entry name" value="PTHR11048"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01040">
        <property type="entry name" value="UbiA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01474">
        <property type="entry name" value="ubiA_proteo"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00943">
        <property type="entry name" value="UBIA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3 8" id="KW-0997">Cell inner membrane</keyword>
    <keyword evidence="2 8" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="8" id="KW-0460">Magnesium</keyword>
    <keyword evidence="7 8" id="KW-0472">Membrane</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4 8 9" id="KW-0808">Transferase</keyword>
    <keyword evidence="5 8" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="6 8" id="KW-1133">Transmembrane helix</keyword>
    <keyword evidence="8" id="KW-0831">Ubiquinone biosynthesis</keyword>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="98"/>
            <end position="119"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="151"/>
            <end position="168"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="174"/>
            <end position="196"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="217"/>
            <end position="238"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="244"/>
            <end position="263"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="275"/>
            <end position="296"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001946"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022519"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01635"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="ABX33662.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="297" mass="32669" checksum="BBCB5E5EB7B00A41" modified="2008-01-15" version="1">MPTTSSTPMPAPRRSKLSLYLDLVRFNRPAGWLVLVWPTLAALWVAAGGFPGWHLLVVFVLGTVLMRSAGCCINDIADRDFDRHVKRTTQRPITSGQVSVKEAALLGAALALVSLGLVLTTRWEAVAWSVPAVLFTILYPFTKRFFAMPQAFLGIAFNFGIVIAFAAVQGQVPATAWILWLANMFLVLAYDTEYAMVDRDDDLRIGMKTSAITLGRFDVVAVMGFFVLCGLLTVWALAPYGLAWPFWLGLAVAAAQVIWHFTLIRHRTREGCFVAFSKSHWIGASLFAGVALGFALR</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="75" xmlns="http://uniprot.org/uniprot">
    <accession>A9BRW0</accession>
    <name>A9BRW0_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="8">FAD dependent oxidoreductase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="8" type="ordered locus">Daci_1031</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="9" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>FAD</name>
            <dbReference type="ChEBI" id="CHEBI:57692"/>
        </cofactor>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the FAD-dependent glycerol-3-phosphate dehydrogenase family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX33677.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012202963.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_1031"/>
    <dbReference type="PRIDE" id="A9BRW0"/>
    <dbReference type="EnsemblBacteria" id="ABX33677">
        <property type="protein sequence ID" value="ABX33677"/>
        <property type="gene ID" value="Daci_1031"/>
    </dbReference>
    <dbReference type="GeneID" id="60685593"/>
    <dbReference type="KEGG" id="dac:Daci_1031"/>
    <dbReference type="eggNOG" id="COG0578">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_015740_4_1_4"/>
    <dbReference type="OMA" id="GVMTIMN"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009331">
        <property type="term" value="C:glycerol-3-phosphate dehydrogenase complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004368">
        <property type="term" value="F:glycerol-3-phosphate dehydrogenase (quinone) activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006072">
        <property type="term" value="P:glycerol-3-phosphate metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.8.870">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.50.50.60">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR031656">
        <property type="entry name" value="DAO_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038299">
        <property type="entry name" value="DAO_C_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006076">
        <property type="entry name" value="FAD-dep_OxRdtase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036188">
        <property type="entry name" value="FAD/NAD-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000447">
        <property type="entry name" value="G3P_DH_FAD-dep"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11985">
        <property type="entry name" value="PTHR11985"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01266">
        <property type="entry name" value="DAO"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF16901">
        <property type="entry name" value="DAO_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR01001">
        <property type="entry name" value="FADG3PDH"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51905">
        <property type="entry name" value="SSF51905"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-0274">FAD</keyword>
    <keyword evidence="3" id="KW-0285">Flavoprotein</keyword>
    <keyword evidence="5" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="DAO" evidence="6">
        <location>
            <begin position="26"/>
            <end position="387"/>
        </location>
    </feature>
    <feature type="domain" description="DAO_C" evidence="7">
        <location>
            <begin position="411"/>
            <end position="513"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001974"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00007330"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022630"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022827"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023002"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="Pfam" id="PF01266"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="Pfam" id="PF16901"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="ABX33677.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="529" mass="56997" checksum="163DAA3855AA3E8E" modified="2008-01-15" version="1"> </sequence>
</entry>
<entry dataset="Swiss-Prot" created="2009-04-14" modified="2022-08-03" version="67" xmlns="http://uniprot.org/uniprot">
    <accession>A9BRW5</accession>
    <name>RS8_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">30S ribosomal protein S8</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="1" type="primary">rpsH</name>
        <name type="ordered locus">Daci_1036</name>
    </gene>
    <organism>
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference key="1">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain>DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="1">One of the primary rRNA binding proteins, it binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit.</text>
    </comment>
    <comment type="subunit">
        <text evidence="1">Part of the 30S ribosomal subunit. Contacts proteins S5 and S12.</text>
    </comment>
    <comment type="similarity">
        <text evidence="1">Belongs to the universal ribosomal protein uS8 family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX33682.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012202968.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A9BRW5"/>
    <dbReference type="SMR" id="A9BRW5"/>
    <dbReference type="STRING" id="398578.Daci_1036"/>
    <dbReference type="PRIDE" id="A9BRW5"/>
    <dbReference type="EnsemblBacteria" id="ABX33682">
        <property type="protein sequence ID" value="ABX33682"/>
        <property type="gene ID" value="Daci_1036"/>
    </dbReference>
    <dbReference type="GeneID" id="60685598"/>
    <dbReference type="KEGG" id="dac:Daci_1036"/>
    <dbReference type="eggNOG" id="COG0096">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_098428_0_0_4"/>
    <dbReference type="OMA" id="FDQGYIL"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005840">
        <property type="term" value="C:ribosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0019843">
        <property type="term" value="F:rRNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003735">
        <property type="term" value="F:structural constituent of ribosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006412">
        <property type="term" value="P:translation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01302_B">
        <property type="entry name" value="Ribosomal_S8_B"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000630">
        <property type="entry name" value="Ribosomal_S8"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035987">
        <property type="entry name" value="Ribosomal_S8_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11758">
        <property type="entry name" value="PTHR11758"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00410">
        <property type="entry name" value="Ribosomal_S8"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56047">
        <property type="entry name" value="SSF56047"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00053">
        <property type="entry name" value="RIBOSOMAL_S8"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword id="KW-1185">Reference proteome</keyword>
    <keyword id="KW-0687">Ribonucleoprotein</keyword>
    <keyword id="KW-0689">Ribosomal protein</keyword>
    <keyword id="KW-0694">RNA-binding</keyword>
    <keyword id="KW-0699">rRNA-binding</keyword>
    <feature type="chain" id="PRO_1000140543" description="30S ribosomal protein S8">
        <location>
            <begin position="1"/>
            <end position="131"/>
        </location>
    </feature>
    <evidence type="ECO:0000255" key="1">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01302"/>
        </source>
    </evidence>
    <sequence length="131" mass="14174" checksum="B8677A446845871C" modified="2008-01-15" version="1">MSMSDPIADLLTRIRNAQMVSKTTVTAPSSKVKVAIAQVLKDEGYIDGFQVKTDAGKSELEITLKYYAGRPVIERIERVSRPGLRVYKGRDAIPQVMNGMGVAIVTTPKGVMTDRKARATGVGGEVLCYVA</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="81" xmlns="http://uniprot.org/uniprot">
    <accession>A9BS11</accession>
    <name>A9BS11_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Transcriptional regulator, Crp/Fnr family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ordered locus">Daci_0775</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="5" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX33421.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012202707.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_0775"/>
    <dbReference type="PRIDE" id="A9BS11"/>
    <dbReference type="EnsemblBacteria" id="ABX33421">
        <property type="protein sequence ID" value="ABX33421"/>
        <property type="gene ID" value="Daci_0775"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_0775"/>
    <dbReference type="eggNOG" id="COG0664">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_075053_3_4_4"/>
    <dbReference type="OMA" id="DYWFSHL"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006355">
        <property type="term" value="P:regulation of transcription, DNA-templated"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd00038">
        <property type="entry name" value="CAP_ED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.120.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018490">
        <property type="entry name" value="cNMP-bd-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000595">
        <property type="entry name" value="cNMP-bd_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012318">
        <property type="entry name" value="HTH_CRP"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014710">
        <property type="entry name" value="RmlC-like_jellyroll"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036390">
        <property type="entry name" value="WH_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00027">
        <property type="entry name" value="cNMP_binding"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13545">
        <property type="entry name" value="HTH_Crp_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00100">
        <property type="entry name" value="cNMP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00419">
        <property type="entry name" value="HTH_CRP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46785">
        <property type="entry name" value="SSF46785"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51206">
        <property type="entry name" value="SSF51206"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50042">
        <property type="entry name" value="CNMP_BINDING_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51063">
        <property type="entry name" value="HTH_CRP_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Cyclic nucleotide-binding" evidence="2">
        <location>
            <begin position="18"/>
            <end position="119"/>
        </location>
    </feature>
    <feature type="domain" description="HTH crp-type" evidence="3">
        <location>
            <begin position="156"/>
            <end position="230"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS50042"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="PROSITE" id="PS51063"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="ABX33421.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="237" mass="26107" checksum="F0C65CEE87F3EDB0" modified="2008-01-15" version="1">MQASLASSYLPTLRAGRWFSALAPQFADLLLALAQPRSLETGEALFLRGDALEGGLFAVVRGSIGFSGVGGQSEQAREALLTRMGPATWFGEIALFDGSPRTHDAHAMEPSVVLQVPRQPLLDWLQQHPAHWHDLGVLMSGRMRAAFAALEDLALLPAPQRLARRLVAMARGYGERLDDVPARPRLDITQEQLARMLSISRQTTNVLLQGLQARGLIRVQRGEIEILQWQALCAERF</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="78" xmlns="http://uniprot.org/uniprot">
    <accession>A9BS14</accession>
    <name>A9BS14_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Transcriptional regulator, LysR family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Daci_0778</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="4" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the LysR transcriptional regulatory family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX33424.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012202710.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_0778"/>
    <dbReference type="PRIDE" id="A9BS14"/>
    <dbReference type="EnsemblBacteria" id="ABX33424">
        <property type="protein sequence ID" value="ABX33424"/>
        <property type="gene ID" value="Daci_0778"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_0778"/>
    <dbReference type="eggNOG" id="COG0583">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_039613_6_0_4"/>
    <dbReference type="OMA" id="HVRKSMM"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003700">
        <property type="term" value="F:DNA-binding transcription factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005119">
        <property type="entry name" value="LysR_subst-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000847">
        <property type="entry name" value="Tscrpt_reg_HTH_LysR"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036390">
        <property type="entry name" value="WH_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00126">
        <property type="entry name" value="HTH_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03466">
        <property type="entry name" value="LysR_substrate"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00039">
        <property type="entry name" value="HTHLYSR"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46785">
        <property type="entry name" value="SSF46785"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50931">
        <property type="entry name" value="HTH_LYSR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HTH lysR-type" evidence="2">
        <location>
            <begin position="14"/>
            <end position="66"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00009437"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS50931"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ABX33424.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="306" mass="32399" checksum="929AFFF3EA9C4EF9" modified="2008-01-15" version="1">MPDARHLLLQDTALRYFHEVAQCGSLTEASARLHVAASAISRQIAALEGLLGTPLFERHPRGMVLNAAGEILADHVRRAGLDAERALGEIEALQGLRSGRVRIASSDAFANEFLPRLCAAFQRAHAGIVFEVMVLPTPAVPEAVRSGAADIGLCFSRAPEKGIAVACRVAAPLVALVAPGHALAQARRLSLAQLVRHPLALTPADTAVRQLLDAACSRQGLMLMPVMESNHGKTLLNFAAQGAAVAVASEIAARHMVATGALVAVALSDRGMDLRDIEVQTLAGRTLPHAAQSFLEMLQLRLPTSW</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="65" xmlns="http://uniprot.org/uniprot">
    <accession>A9BS34</accession>
    <name>A9BS34_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="3">AMP-dependent synthetase and ligase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Daci_0798</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="4" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX33444.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012202730.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_0798"/>
    <dbReference type="PRIDE" id="A9BS34"/>
    <dbReference type="EnsemblBacteria" id="ABX33444">
        <property type="protein sequence ID" value="ABX33444"/>
        <property type="gene ID" value="Daci_0798"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_0798"/>
    <dbReference type="eggNOG" id="COG0318">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_000022_59_0_4"/>
    <dbReference type="OMA" id="PPTLVYM"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016874">
        <property type="term" value="F:ligase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.300.30">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.12780">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025110">
        <property type="entry name" value="AMP-bd_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045851">
        <property type="entry name" value="AMP-bd_C_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020845">
        <property type="entry name" value="AMP-binding_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000873">
        <property type="entry name" value="AMP-dep_Synth/Lig"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR042099">
        <property type="entry name" value="ANL_N_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00501">
        <property type="entry name" value="AMP-binding"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13193">
        <property type="entry name" value="AMP-binding_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00455">
        <property type="entry name" value="AMP_BINDING"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-0436">Ligase</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="AMP-binding" evidence="1">
        <location>
            <begin position="7"/>
            <end position="397"/>
        </location>
    </feature>
    <feature type="domain" description="AMP-binding_C" evidence="2">
        <location>
            <begin position="406"/>
            <end position="485"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF00501"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF13193"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ABX33444.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="499" mass="53536" checksum="0606208CA9CADD95" modified="2008-01-15" version="1">MQPIDFFWRAAERWPQRIAIDAPGGCIRYDALARKVAALAAGLQALEPAVQSRVGICAGNSADHIAALLAVMASGKVWVPLNPKSTQSEVRRIIDATEPSIVLCDAGGAALVQGAPGIHLMLGEGTAALEQAQTGALPVTPELPADAIQAIKFTGGTTGLPKGVMQPCRAWMAGIANQIQAWGFDEHDRYVMAAPITHGTSTYLLPILAQGGCHVLLDGAGAEAVRSAFALRGGTVCFMPPTLIYMLMALPGASRADFPGLRRLIYGGAAMPPEKIRQVRAFFGPVLATTYGQTEAPQILTAMRPEDFEDEGLWTSVGRATWFSDLAIMAPDGRLLPRGEVGEVVARGDLLMSGYWRLPGKTAETLVNGWLHTGDRGLIDAQGYLHLKDRLKDLVITGGFNVYPVDVENALGQHPAVHECVVFGIPDDHWGEAVQAAVQLRAELRPDQRPDEAELIAFVRQRLGPVQTPKRIHFHASLPRSPVGKLLKTAVRELALAPR</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="76" xmlns="http://uniprot.org/uniprot">
    <accession>A9BSG6</accession>
    <name>A9BSG6_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="5">2OG-Fe(II) oxygenase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ordered locus">Daci_1135</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="6" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="2">Belongs to the iron/ascorbate-dependent oxidoreductase family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX33780.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012203066.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_1135"/>
    <dbReference type="PRIDE" id="A9BSG6"/>
    <dbReference type="EnsemblBacteria" id="ABX33780">
        <property type="protein sequence ID" value="ABX33780"/>
        <property type="gene ID" value="Daci_1135"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_1135"/>
    <dbReference type="eggNOG" id="COG3491">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_010119_6_2_4"/>
    <dbReference type="OMA" id="FKEAMNF"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051213">
        <property type="term" value="F:dioxygenase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.120.330">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR026992">
        <property type="entry name" value="DIOX_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR044861">
        <property type="entry name" value="IPNS-like_FE2OG_OXY"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027443">
        <property type="entry name" value="IPNS-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005123">
        <property type="entry name" value="Oxoglu/Fe-dep_dioxygenase"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03171">
        <property type="entry name" value="2OG-FeII_Oxy"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF14226">
        <property type="entry name" value="DIOX_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51471">
        <property type="entry name" value="FE2OG_OXY"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="1" id="KW-0223">Dioxygenase</keyword>
    <keyword evidence="2" id="KW-0408">Iron</keyword>
    <keyword evidence="2" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="2" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Fe2OG dioxygenase" evidence="4">
        <location>
            <begin position="195"/>
            <end position="306"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="3">
        <location>
            <begin position="111"/>
            <end position="130"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022964"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="RuleBase" id="RU003682"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="PROSITE" id="PS51471"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="ABX33780.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="340" mass="38315" checksum="F49E3A78943C6D24" modified="2008-01-15" version="1">MNMLANPTLPSAPASDYALGELAKEARMGGQGQETRAREVRVIDISDFDRRKAEIADAIWQASVEIGFFQVSGHGIPQPDIDAAFGRAEQLFALPREVKAQWPLSRNAGWEHKAQIRPSTRTPDQKESYQMTRPRMAGLWPTQQELPGFQQATLGFERQCWQVGMQLLSCFAHKLGFDADFFTRAHDPSVPAYQSTLRMLHYFAVDPALKDELGLWRAGAHTDFDCLTLLFQRAGQGGLQVLPGKEMEGQQWTPVDPVEGVITCNIGDMLTRWSDDQLPSNFHRVRNPLPHEYQGARYSLAFFCQANEDAVIEGPQKKYPPITGAEYLRQRISANFSNKY</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="60" xmlns="http://uniprot.org/uniprot">
    <accession>A9BSM5</accession>
    <name>A9BSM5_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">HTH OST-type domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Daci_1386</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="4" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX34030.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012203316.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_1386"/>
    <dbReference type="PRIDE" id="A9BSM5"/>
    <dbReference type="EnsemblBacteria" id="ABX34030">
        <property type="protein sequence ID" value="ABX34030"/>
        <property type="gene ID" value="Daci_1386"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_1386"/>
    <dbReference type="eggNOG" id="COG1432">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_034061_0_0_4"/>
    <dbReference type="OMA" id="IDADNTQ"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004540">
        <property type="term" value="F:ribonuclease activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.420.610">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041966">
        <property type="entry name" value="LOTUS-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR021139">
        <property type="entry name" value="NYN_MARF1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025605">
        <property type="entry name" value="OST-HTH/LOTUS_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01936">
        <property type="entry name" value="NYN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12872">
        <property type="entry name" value="OST-HTH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51644">
        <property type="entry name" value="HTH_OST"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HTH OST-type" evidence="2">
        <location>
            <begin position="219"/>
            <end position="292"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="151"/>
            <end position="209"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="280"/>
            <end position="303"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="282"/>
            <end position="296"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS51644"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ABX34030.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="303" mass="32703" checksum="106934983696182E" modified="2008-01-15" version="1">MPEPQPRIALLIDADNAPAEMIDEILTELSTFGVIDIRRAYGNWTKHSLSGWQRKLLDFALRPMQQFDYSKHKNATDMAMTVDAMELLYTERPDAFGIVSSDADFTPLVMHLRSKGAAVYGFGMAQTPQPFVNACSRFLYLEALGEAAPANGNGQDAAHEAGQAAVPPVAAAAVATAPQPPNGAGKERAPAQAENEPSAEPQAQPQRPCLRVPSQELRQDKRLLAMLRSAVNATQDESGWAHVGAVGAQIGNKASFDARNYGYATLTKLLAATQAFEMRDEGTSRVAVRDKRLAKAQSRPSGN</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="54" xmlns="http://uniprot.org/uniprot">
    <accession>A9BT27</accession>
    <name>A9BT27_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">ASCH domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_1744</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX34387.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012203672.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="PRIDE" id="A9BT27"/>
    <dbReference type="EnsemblBacteria" id="ABX34387">
        <property type="protein sequence ID" value="ABX34387"/>
        <property type="gene ID" value="Daci_1744"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_1744"/>
    <dbReference type="eggNOG" id="COG4933">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_135561_0_0_4"/>
    <dbReference type="OMA" id="PQSFRYI"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007374">
        <property type="entry name" value="ASCH_domain"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015947">
        <property type="entry name" value="PUA-like_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04266">
        <property type="entry name" value="ASCH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF88697">
        <property type="entry name" value="SSF88697"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="ASCH" evidence="1">
        <location>
            <begin position="10"/>
            <end position="64"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF04266"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX34387.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="161" mass="17752" checksum="3D4E37D0BDB798C4" modified="2008-01-15" version="1">MNAPHNFLISLEERHANRILQGTKTVELRRRPMHVALGSTVWFYVKMPVGSIVGCATVTGLHTLAPSTLWRRFGTVSGLKRQEFFEYFSGISKAFALGLSEPTELTSPIPLSKLRDVSGGFHPPQFFANVANDGPLLHVMSQALHGRPATSQNLQTELELA</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2021-06-02" version="35" xmlns="http://uniprot.org/uniprot">
    <accession>A9BT53</accession>
    <name>A9BT53_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_1978</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX34618.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012203903.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_1978"/>
    <dbReference type="EnsemblBacteria" id="ABX34618">
        <property type="protein sequence ID" value="ABX34618"/>
        <property type="gene ID" value="Daci_1978"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_1978"/>
    <dbReference type="eggNOG" id="ENOG50331AN">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_112374_0_0_4"/>
    <dbReference type="OMA" id="AGTINCA"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="1">
        <location>
            <begin position="1"/>
            <end position="29"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5002735778" evidence="1">
        <location>
            <begin position="30"/>
            <end position="203"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX34618.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="203" mass="20226" checksum="ABDDB5D09BE4D223" modified="2008-01-15" version="1">MNRTPIAQRLLAASLGGLGLALTALPAMAESQYGSGTGTITAQAKVNLSVTVPKLILLRVGSTNTTVDTVTWTSTLSIPGVPTTPLASVNNTNVDWNGAAPTVATASAAATLTVYAWTNAGAGTINCAVGAWNATGGPANADFTVTTTGTLPHPGPNLGACASTSFPSNVVATGTWAYALGGTPASWAANTYTNVITYTAQGI</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="42" xmlns="http://uniprot.org/uniprot">
    <accession>A9BTE0</accession>
    <name>A9BTE0_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">PsiF repeat protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_2268</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX34908.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_2268"/>
    <dbReference type="PRIDE" id="A9BTE0"/>
    <dbReference type="EnsemblBacteria" id="ABX34908">
        <property type="protein sequence ID" value="ABX34908"/>
        <property type="gene ID" value="Daci_2268"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_2268"/>
    <dbReference type="eggNOG" id="ENOG5032ZDU">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_129289_0_1_4"/>
    <dbReference type="OMA" id="MSQQDKM"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011690">
        <property type="entry name" value="P_starv_induced_PsiF"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07769">
        <property type="entry name" value="PsiF_repeat"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="1">
        <location>
            <begin position="1"/>
            <end position="34"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5002736025" evidence="1">
        <location>
            <begin position="35"/>
            <end position="107"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX34908.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="107" mass="11905" checksum="F2B5E241692E7DEB" modified="2008-01-15" version="1">MWVRWTSARLQNHSIMKKIVVLAVVSLACSMGMAAGDKAPTAQQKLMGTCNTEATGKKGDERKEFMKSCLSDGKKRQQERMKTCNVDATGKKGDERKAFMSECLKKD</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="58" xmlns="http://uniprot.org/uniprot">
    <accession>A9BTY9</accession>
    <name>A9BTY9_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ordered locus">Daci_2765</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="5" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Periplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the UPF0065 (bug) family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX35403.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012204613.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_2765"/>
    <dbReference type="PRIDE" id="A9BTY9"/>
    <dbReference type="EnsemblBacteria" id="ABX35403">
        <property type="protein sequence ID" value="ABX35403"/>
        <property type="gene ID" value="Daci_2765"/>
    </dbReference>
    <dbReference type="GeneID" id="60687030"/>
    <dbReference type="KEGG" id="dac:Daci_2765"/>
    <dbReference type="eggNOG" id="COG3181">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_045683_0_0_4"/>
    <dbReference type="OMA" id="FMGAVHH"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0042597">
        <property type="term" value="C:periplasmic space"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.190.150">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005064">
        <property type="entry name" value="BUG"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR042100">
        <property type="entry name" value="Bug_dom1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006311">
        <property type="entry name" value="TAT_signal"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR42928">
        <property type="entry name" value="PTHR42928"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03401">
        <property type="entry name" value="TctC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF017082">
        <property type="entry name" value="YflP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51318">
        <property type="entry name" value="TAT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="3">
        <location>
            <begin position="1"/>
            <end position="31"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5002736051" evidence="3">
        <location>
            <begin position="32"/>
            <end position="332"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004418"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00006987"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="ABX35403.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="332" mass="35168" checksum="A2A75D4480D47DCF" modified="2008-01-15" version="1">MQASHPTGRRAVLRAAGASMAALALPMAARAAADWPSKPVNLVVPFPAGGGTDAFARPFSAQFAKSAGKTLVIDNRGGAGGTLGASYAAKLAPDGYNFFMGGTHHVIAPSMYPRLDYDLERDFIALALLASVPQVLVVNPRNVPHKTVQELLSDLRKRPGKLNYASAGAGTSHHLAGELFKLQTNTFITHIPYRGAGPALQDLIAGNVDMMFDGLGSSAQHIKSGRIRALMVSGDKRNPAFPDVPCAAESGLPDYTVTTWYGLWAPKGTPQAVQAQVIDQVQRIGSAEEIKSIWARNGADYGGMNQQQFAAMVHGEIARWAQVVKASGAKLE</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="56" xmlns="http://uniprot.org/uniprot">
    <accession>A9BU12</accession>
    <name>A9BU12_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Peptidase S1 and S6 chymotrypsin/Hap</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_3089</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX35727.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_3089"/>
    <dbReference type="PRIDE" id="A9BU12"/>
    <dbReference type="EnsemblBacteria" id="ABX35727">
        <property type="protein sequence ID" value="ABX35727"/>
        <property type="gene ID" value="Daci_3089"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_3089"/>
    <dbReference type="eggNOG" id="COG5640">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_1208160_0_0_4"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004252">
        <property type="term" value="F:serine-type endopeptidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006508">
        <property type="term" value="P:proteolysis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009003">
        <property type="entry name" value="Peptidase_S1_PA"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043504">
        <property type="entry name" value="Peptidase_S1_PA_chymotrypsin"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001254">
        <property type="entry name" value="Trypsin_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018114">
        <property type="entry name" value="TRYPSIN_HIS"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00089">
        <property type="entry name" value="Trypsin"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00020">
        <property type="entry name" value="Tryp_SPc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50494">
        <property type="entry name" value="SSF50494"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50240">
        <property type="entry name" value="TRYPSIN_DOM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00134">
        <property type="entry name" value="TRYPSIN_HIS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Peptidase S1" evidence="1">
        <location>
            <begin position="1"/>
            <end position="224"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS50240"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX35727.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="229" mass="24532" checksum="07C28438F87D3DFE" modified="2008-01-15" version="1">MLKDGWLLTAAHCLFDKTGARIAQDKLIVYMPFQGSSEQAMAAQALNRNLRSFSVVPGSATLYDVEFQPSKLYDFESAKDLAVLRVSVPAGSATWRPVVLRTANKDMPFTSAGYGLTNAADPGVDGSTLEITRRTADVRVFPKYLLYESVSTKGMGRVCAGDSGGPVFAGELNGGPKPPEHELVGVVSGSTATGQSVAYCRAGNQYIVRVNTTEVAQWMCSSTKKAICY</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="71" xmlns="http://uniprot.org/uniprot">
    <accession>A9BUN4</accession>
    <name>A9BUN4_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="4">PfkB domain protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ordered locus">Daci_1498</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="5" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX34142.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012203428.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_1498"/>
    <dbReference type="PRIDE" id="A9BUN4"/>
    <dbReference type="EnsemblBacteria" id="ABX34142">
        <property type="protein sequence ID" value="ABX34142"/>
        <property type="gene ID" value="Daci_1498"/>
    </dbReference>
    <dbReference type="GeneID" id="60686037"/>
    <dbReference type="KEGG" id="dac:Daci_1498"/>
    <dbReference type="eggNOG" id="COG0524">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_027634_5_2_4"/>
    <dbReference type="OMA" id="SQQIARM"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016301">
        <property type="term" value="F:kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016773">
        <property type="term" value="F:phosphotransferase activity, alcohol group as acceptor"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016310">
        <property type="term" value="P:phosphorylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.1190.20">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002173">
        <property type="entry name" value="Carboh/pur_kinase_PfkB_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011611">
        <property type="entry name" value="PfkB_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029056">
        <property type="entry name" value="Ribokinase-like"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00294">
        <property type="entry name" value="PfkB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53613">
        <property type="entry name" value="SSF53613"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00583">
        <property type="entry name" value="PFKB_KINASES_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0418">Kinase</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="PfkB" evidence="3">
        <location>
            <begin position="35"/>
            <end position="292"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022777"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF00294"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="ABX34142.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="300" mass="32598" checksum="2AAA1705188CA12F" modified="2008-01-15" version="1">MAALICGSLAFDNIMTFEGRFADQILPDQLHILNVSFLVPTLRRDFGGCAGNIAYALRLLGGDAWPMAMVGSDGADYVQRLDELGVQTAHIGQLQDTHTAQCMIMTDRDNNQITAFHPGAMMQAHGNRITPELKEQVRVGIIAPDGRQAMLEHAQQFKAAGIPFVFDPGQGLPMFDGQELRSFIEQADWVAVNDYEARMLSERTGWSLEQISGQVQGLVVTLGAEGCEVWVQGAKTLVAPVQPAAVVDPTGCGDAWRGAMLFGLERGWDLVRCAELGNRLGALKIASRGPQNYVLDFAQP</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="47" xmlns="http://uniprot.org/uniprot">
    <accession>A9BUP8</accession>
    <name>A9BUP8_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Daci_1512</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="2" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX34156.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012203442.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_1512"/>
    <dbReference type="PRIDE" id="A9BUP8"/>
    <dbReference type="EnsemblBacteria" id="ABX34156">
        <property type="protein sequence ID" value="ABX34156"/>
        <property type="gene ID" value="Daci_1512"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_1512"/>
    <dbReference type="eggNOG" id="ENOG5032CYW">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_1233381_0_0_4"/>
    <dbReference type="OMA" id="NACRARD"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009677">
        <property type="entry name" value="DUF1266"/>
    </dbReference>
    <dbReference type="Pfam" id="PF06889">
        <property type="entry name" value="DUF1266"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ABX34156.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="224" mass="25355" checksum="D3EEC98D257FD00C" modified="2008-01-15" version="1">MNAFTLVVLSALVWWAVRAGLRRMRASRQRGDFSSYRSGDAALDWALALAHPMAFHAIQGGFADRQLNGADSALTTQLRPMVLHHLGLRTDLDDAQIARQLPDGLRQRWFTLDLQRLQAGDDPHAAMAFACARVAFHVRCAWLLGWVDEALHQQILHLNACRARDCFDSWQAFGQAYARGRSQWLARGRADVLGCSVTPEQVQQWVADPRHPWHAMPWQQQAVR</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="82" xmlns="http://uniprot.org/uniprot">
    <accession>A9BUX9</accession>
    <name>A9BUX9_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="5">Signal recognition particle receptor FtsY</fullName>
            <shortName evidence="5">SRP receptor</shortName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="5" type="primary">ftsY</name>
        <name evidence="8" type="ordered locus">Daci_1799</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="9" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="5">Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Acts as a receptor for the complex formed by the signal recognition particle (SRP) and the ribosome-nascent chain (RNC). Interaction with SRP-RNC leads to the transfer of the RNC complex to the Sec translocase for insertion into the membrane, the hydrolysis of GTP by both Ffh and FtsY, and the dissociation of the SRP-FtsY complex into the individual components.</text>
    </comment>
    <comment type="subunit">
        <text evidence="5">Part of the signal recognition particle protein translocation system, which is composed of SRP and FtsY. SRP is a ribonucleoprotein composed of Ffh and a 4.5S RNA molecule.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="5">Cell inner membrane</location>
            <topology evidence="5">Peripheral membrane protein</topology>
            <orientation evidence="5">Cytoplasmic side</orientation>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="5">Cytoplasm</location>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Peripheral membrane protein</topology>
            <orientation evidence="1">Cytoplasmic side</orientation>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="5">Belongs to the GTP-binding SRP family. FtsY subfamily.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX34441.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012203726.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_1799"/>
    <dbReference type="PRIDE" id="A9BUX9"/>
    <dbReference type="EnsemblBacteria" id="ABX34441">
        <property type="protein sequence ID" value="ABX34441"/>
        <property type="gene ID" value="Daci_1799"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_1799"/>
    <dbReference type="eggNOG" id="COG0552">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_009301_3_0_4"/>
    <dbReference type="OMA" id="GISDQFQ"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0031226">
        <property type="term" value="C:intrinsic component of plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005525">
        <property type="term" value="F:GTP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003924">
        <property type="term" value="F:GTPase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006614">
        <property type="term" value="P:SRP-dependent cotranslational protein targeting to membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.120.140">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00920">
        <property type="entry name" value="FtsY"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003593">
        <property type="entry name" value="AAA+_ATPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013822">
        <property type="entry name" value="Signal_recog_particl_SRP54_hlx"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004390">
        <property type="entry name" value="SR_rcpt_FtsY"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036225">
        <property type="entry name" value="SRP/SRP_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000897">
        <property type="entry name" value="SRP54_GTPase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR042101">
        <property type="entry name" value="SRP54_N_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43134:SF7">
        <property type="entry name" value="PTHR43134:SF7"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00448">
        <property type="entry name" value="SRP54"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02881">
        <property type="entry name" value="SRP54_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00382">
        <property type="entry name" value="AAA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00962">
        <property type="entry name" value="SRP54"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00963">
        <property type="entry name" value="SRP54_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47364">
        <property type="entry name" value="SSF47364"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00064">
        <property type="entry name" value="ftsY"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00300">
        <property type="entry name" value="SRP54"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-0997">Cell inner membrane</keyword>
    <keyword evidence="5" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="5" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="3 5" id="KW-0342">GTP-binding</keyword>
    <keyword evidence="5" id="KW-0472">Membrane</keyword>
    <keyword evidence="2 5" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="4 5" id="KW-0675">Receptor</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="SRP54" evidence="7">
        <location>
            <begin position="379"/>
            <end position="392"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="6">
        <location>
            <begin position="1"/>
            <end position="84"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Pro residues" evidence="6">
        <location>
            <begin position="32"/>
            <end position="47"/>
        </location>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <begin position="213"/>
            <end position="220"/>
        </location>
        <ligand>
            <name>GTP</name>
            <dbReference type="ChEBI" id="CHEBI:37565"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <begin position="294"/>
            <end position="298"/>
        </location>
        <ligand>
            <name>GTP</name>
            <dbReference type="ChEBI" id="CHEBI:37565"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <begin position="358"/>
            <end position="361"/>
        </location>
        <ligand>
            <name>GTP</name>
            <dbReference type="ChEBI" id="CHEBI:37565"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004287"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023134"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023170"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00920"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="PROSITE" id="PS00300"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="ABX34441.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="406" mass="42426" checksum="FFDBCD05DC0D7704" modified="2008-01-15" version="1">MFSFFKKKPTPSAAEISPADSSAAPEKAGIPATPPQDSPPALPPAAPAAPAADTGSAWWRKPFGGGKGDAAPPETPPAPAAAPASTIAPADFIAAPEPTAKPEAEGASRQNWMQRLKTGLRKTGSSIATVFTGTQINDALYEELEDALLMADTGVKATEHLLADLRRRVKEAKATDPAAVKALLADALADLLRPLEKPLVIGEHQPTVIMVAGVNGAGKTTSIGKLTRHLADEGQSVLLAAADTFRAAAREQLGVWANRNTVEIVSQEGGDPAAVSFDAVTAGRARKKDVVLVDTAGRLPTQLHLMEELRKIRRVVSKADATAPHEVLLVIDGNTGQNALAQVRAFDDALQLTGLIVTKLDGTAKGGVLAAIAQERPIPVYFIGVGEKVEDLETFNAREFAQALLS</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="57" xmlns="http://uniprot.org/uniprot">
    <accession>A9BV53</accession>
    <name>A9BV53_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Outer membrane efflux protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ordered locus">Daci_2077</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="5" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the outer membrane factor (OMF) (TC 1.B.17) family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX34717.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012204000.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_2077"/>
    <dbReference type="PRIDE" id="A9BV53"/>
    <dbReference type="EnsemblBacteria" id="ABX34717">
        <property type="protein sequence ID" value="ABX34717"/>
        <property type="gene ID" value="Daci_2077"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_2077"/>
    <dbReference type="eggNOG" id="COG1538">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_472301_0_0_4"/>
    <dbReference type="OMA" id="GWHARCH"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015562">
        <property type="term" value="F:efflux transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003423">
        <property type="entry name" value="OMP_efflux"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02321">
        <property type="entry name" value="OEP"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="3">
        <location>
            <begin position="1"/>
            <end position="40"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5002732555" evidence="3">
        <location>
            <begin position="41"/>
            <end position="580"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="503"/>
            <end position="550"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00007613"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="ABX34717.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="580" mass="62694" checksum="D1E0796930E05A56" modified="2008-01-15" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2021-09-29" version="53" xmlns="http://uniprot.org/uniprot">
    <accession>A9BV58</accession>
    <name>A9BV58_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_2082</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX34722.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012204005.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_2082"/>
    <dbReference type="EnsemblBacteria" id="ABX34722">
        <property type="protein sequence ID" value="ABX34722"/>
        <property type="gene ID" value="Daci_2082"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_2082"/>
    <dbReference type="eggNOG" id="COG3266">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="eggNOG" id="COG5295">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_240800_0_0_4"/>
    <dbReference type="OMA" id="NICNYAS"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.150.10.10">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011049">
        <property type="entry name" value="Serralysin-like_metalloprot_C"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="186"/>
            <end position="414"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Pro residues" evidence="1">
        <location>
            <begin position="194"/>
            <end position="403"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX34722.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="1703" mass="158304" checksum="8D94E3BDBAFE12AD" modified="2008-01-15" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="55" xmlns="http://uniprot.org/uniprot">
    <accession>A9BVB4</accession>
    <name>A9BVB4_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Basic membrane lipoprotein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Daci_2138</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="4" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX34778.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012204061.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_2138"/>
    <dbReference type="PRIDE" id="A9BVB4"/>
    <dbReference type="EnsemblBacteria" id="ABX34778">
        <property type="protein sequence ID" value="ABX34778"/>
        <property type="gene ID" value="Daci_2138"/>
    </dbReference>
    <dbReference type="GeneID" id="60686536"/>
    <dbReference type="KEGG" id="dac:Daci_2138"/>
    <dbReference type="eggNOG" id="COG1744">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_038813_2_0_4"/>
    <dbReference type="OMA" id="IKAKVVW"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003760">
        <property type="entry name" value="PnrA-like"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02608">
        <property type="entry name" value="Bmp"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-0449">Lipoprotein</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <feature type="domain" description="Bmp" evidence="2">
        <location>
            <begin position="58"/>
            <end position="328"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022729"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF02608"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ABX34778.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="390" mass="41458" checksum="9A17F402D0A5AE11" modified="2008-01-15" version="1">MPALRERTLKPGLKSTLVKMIGLSAISVAALTACGKKEEAAAPAPAAAPAAQAPAEKLKIGFMYVSPIGDGGWTFQHELGRKAIQEKFGDKVETSFVESVPESADAERVMRDMAGQGNKLIFATSFGYQEFVQKVAADLKDVKFEHATGYKNADNVATYDTKTFEGAYLAGIVAGGMTKTKTVGVVASVPIPEVVRNINSFVLGAQSVDPSIKAKVVWVNEWFAPPKESEAATSLINGGVDVLYQNTNSPAVLKTAEERGARAFGKDGDMSAFAPKAHLGSAVIDWTPYYSKVTQDTLDGKWQGGSFWWGVKEGAIDLVKIADDVPQDIKDKVAKARDGLKDGSFAVWTGPIKDNTGKEVLTAGQVGDLGFMTSINFFVNGVEGKVPGAK</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="44" xmlns="http://uniprot.org/uniprot">
    <accession>A9BVK7</accession>
    <name>A9BVK7_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Daci_2436</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="2" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX35074.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012204356.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_2436"/>
    <dbReference type="PRIDE" id="A9BVK7"/>
    <dbReference type="EnsemblBacteria" id="ABX35074">
        <property type="protein sequence ID" value="ABX35074"/>
        <property type="gene ID" value="Daci_2436"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_2436"/>
    <dbReference type="eggNOG" id="ENOG5033A5V">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_201151_0_0_4"/>
    <dbReference type="OMA" id="IVVQRDQ"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ABX35074.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="67" mass="7152" checksum="9990F27F75616E10" modified="2008-01-15" version="1">MKTPDISTAKNPDLRASMAALQRAAALARKTAIQTDTGIVIVRDGQIVHVSAQELRQSAESTEKHPG</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="84" xmlns="http://uniprot.org/uniprot">
    <accession>A9BVU2</accession>
    <name>A9BVU2_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Transcriptional regulator, GntR family with aminotransferase domain</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ordered locus">Daci_2817</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="5" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">In the C-terminal section; belongs to the class-I pyridoxal-phosphate-dependent aminotransferase family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX35455.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012204665.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="PRIDE" id="A9BVU2"/>
    <dbReference type="EnsemblBacteria" id="ABX35455">
        <property type="protein sequence ID" value="ABX35455"/>
        <property type="gene ID" value="Daci_2817"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_2817"/>
    <dbReference type="eggNOG" id="COG1167">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_017584_0_1_4"/>
    <dbReference type="OMA" id="FRHTGEP"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003700">
        <property type="term" value="F:DNA-binding transcription factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030170">
        <property type="term" value="F:pyridoxal phosphate binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008483">
        <property type="term" value="F:transaminase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009058">
        <property type="term" value="P:biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd07377">
        <property type="entry name" value="WHTH_GntR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.640.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004839">
        <property type="entry name" value="Aminotransferase_I/II"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015424">
        <property type="entry name" value="PyrdxlP-dep_Trfase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015421">
        <property type="entry name" value="PyrdxlP-dep_Trfase_major"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000524">
        <property type="entry name" value="Tscrpt_reg_HTH_GntR"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036390">
        <property type="entry name" value="WH_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00155">
        <property type="entry name" value="Aminotran_1_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00392">
        <property type="entry name" value="GntR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00035">
        <property type="entry name" value="HTHGNTR"/>
    </dbReference>
    <dbReference type="SMART" id="SM00345">
        <property type="entry name" value="HTH_GNTR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46785">
        <property type="entry name" value="SSF46785"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53383">
        <property type="entry name" value="SSF53383"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50949">
        <property type="entry name" value="HTH_GNTR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-0032">Aminotransferase</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="HTH gntR-type" evidence="3">
        <location>
            <begin position="18"/>
            <end position="85"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="1"/>
            <end position="20"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="2">
        <location>
            <begin position="1"/>
            <end position="16"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00005384"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="PROSITE" id="PS50949"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="ABX35455.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="487" mass="52101" checksum="FD3A36A051316CEE" modified="2008-01-15" version="1">MHASDLLTSPLQSGPGAAPRQRQLIQRLKQAILAGRLPAGDRLPASRALSEDLGVSRNTVLIAYEQLAAEGYVVADRQGTRVAAVSTHSTAAAEAAAPPPCAPRTARRLDRIAPTRHAIDRSLPLTPGTPALDRFPLPAWRRSQDRALRLPASATLDYGDPAGEPALRQAIAQHLRISRGVRCDASRIIVTEGAQGALDLCVQLLSNPGDHAWLEEPGYRGAKSAFAGGDLCVSTLRVDADGAAIAPGLWDSHPPRLIQITPSHQYPTGAVLSVARRLDLLERARRAGAWIIEDDYDSEFRHQGTPIAAMQGQVPDAPVLYVGTFSKTMFPALRLGFVVLPQALAASAATAVQEMLRGGHRLEQLALADFMDSGQFSRHLGRMRRLYRERQAALREALATQLGVEHEVLGGHGGLHLTVRLPPDLSDRAIVEQARRAGMNPGALSSFALAPLPQDNGLVIGYGNTDAARFGALVRRLGKLAAAALPR</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="38" xmlns="http://uniprot.org/uniprot">
    <accession>A9BW61</accession>
    <name>A9BW61_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_3239</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX35877.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012205077.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_3239"/>
    <dbReference type="PRIDE" id="A9BW61"/>
    <dbReference type="EnsemblBacteria" id="ABX35877">
        <property type="protein sequence ID" value="ABX35877"/>
        <property type="gene ID" value="Daci_3239"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_3239"/>
    <dbReference type="eggNOG" id="ENOG503456W">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_2218792_0_0_4"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="84"/>
            <end position="106"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX35877.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="106" mass="12060" checksum="1C42DC6B0A9607FE" modified="2008-01-15" version="1">MTDKPKHLSLVPPAEPDAKTALIERVKARYRPPGMLQCPKCGGRAVMTVVNGSWIDEKGRYQRGTMTHDRVCYTCDKQGIWSPMMPPEFKVAKEPKPRRTKPRPVK</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="46" xmlns="http://uniprot.org/uniprot">
    <accession>A9BW70</accession>
    <name>A9BW70_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Daci_3248</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="2" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX35886.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012205086.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_3248"/>
    <dbReference type="PRIDE" id="A9BW70"/>
    <dbReference type="EnsemblBacteria" id="ABX35886">
        <property type="protein sequence ID" value="ABX35886"/>
        <property type="gene ID" value="Daci_3248"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_3248"/>
    <dbReference type="eggNOG" id="ENOG503481T">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_161805_0_0_4"/>
    <dbReference type="OMA" id="TIECTFR"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014859">
        <property type="entry name" value="Phage_TAC_4"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08748">
        <property type="entry name" value="Phage_TAC_4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ABX35886.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="148" mass="16041" checksum="B2896A7657BBB542" modified="2008-01-15" version="1">MTASAKKADKAAPFILGKRPETISGTIEFPLPDGTSAKLECKFKYRTRKEFGALWDEIAGATLALATAQQEGTVKKEGDEVKFSFAGMFERGDAVNADNVLKYLAAWNEDFPALSKDTLIELFDQAPAAPAALWDGYRSLCTTGRVGN</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="72" xmlns="http://uniprot.org/uniprot">
    <accession>A9BW88</accession>
    <name>A9BW88_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="7">Methyl-accepting chemotaxis sensory transducer</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ordered locus">Daci_3266</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="8" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the methyl-accepting chemotaxis (MCP) protein family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX35904.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_3266"/>
    <dbReference type="PRIDE" id="A9BW88"/>
    <dbReference type="EnsemblBacteria" id="ABX35904">
        <property type="protein sequence ID" value="ABX35904"/>
        <property type="gene ID" value="Daci_3266"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_3266"/>
    <dbReference type="eggNOG" id="COG0840">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_000445_107_16_4"/>
    <dbReference type="OMA" id="FAKYETL"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004888">
        <property type="term" value="F:transmembrane signaling receptor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006935">
        <property type="term" value="P:chemotaxis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0007165">
        <property type="term" value="P:signal transduction"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004090">
        <property type="entry name" value="Chemotax_Me-accpt_rcpt"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003660">
        <property type="entry name" value="HAMP_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR024478">
        <property type="entry name" value="HlyB_4HB_MCP"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004089">
        <property type="entry name" value="MCPsignal_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12729">
        <property type="entry name" value="4HB_MCP_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00672">
        <property type="entry name" value="HAMP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00015">
        <property type="entry name" value="MCPsignal"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00260">
        <property type="entry name" value="CHEMTRNSDUCR"/>
    </dbReference>
    <dbReference type="SMART" id="SM00304">
        <property type="entry name" value="HAMP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00283">
        <property type="entry name" value="MA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50111">
        <property type="entry name" value="CHEMOTAXIS_TRANSDUC_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50885">
        <property type="entry name" value="HAMP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-0472">Membrane</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0807">Transducer</keyword>
    <keyword evidence="4" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="4" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="4">
        <location>
            <begin position="225"/>
            <end position="246"/>
        </location>
    </feature>
    <feature type="domain" description="HAMP" evidence="6">
        <location>
            <begin position="247"/>
            <end position="299"/>
        </location>
    </feature>
    <feature type="domain" description="Methyl-accepting transducer" evidence="5">
        <location>
            <begin position="304"/>
            <end position="533"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="3">
        <location>
            <begin position="570"/>
            <end position="650"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00029447"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00284"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="PROSITE" id="PS50111"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="PROSITE" id="PS50885"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="ABX35904.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="650" mass="68717" checksum="736D186C9E6C0ADA" modified="2008-01-15" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="70" xmlns="http://uniprot.org/uniprot">
    <accession>A9BWD7</accession>
    <name>A9BWD7_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="4">Probable transcriptional regulatory protein Daci_3521</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="6" type="ordered locus">Daci_3521</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="7" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="4">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="1 4">Belongs to the TACO1 family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX36157.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012205357.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_3521"/>
    <dbReference type="PRIDE" id="A9BWD7"/>
    <dbReference type="EnsemblBacteria" id="ABX36157">
        <property type="protein sequence ID" value="ABX36157"/>
        <property type="gene ID" value="Daci_3521"/>
    </dbReference>
    <dbReference type="GeneID" id="60687747"/>
    <dbReference type="KEGG" id="dac:Daci_3521"/>
    <dbReference type="eggNOG" id="COG0217">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_062974_2_2_4"/>
    <dbReference type="OMA" id="ETIMYEG"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006355">
        <property type="term" value="P:regulation of transcription, DNA-templated"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.200">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.70.980">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00693">
        <property type="entry name" value="Transcrip_reg_TACO1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017856">
        <property type="entry name" value="Integrase-like_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002876">
        <property type="entry name" value="Transcrip_reg_TACO1-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR026564">
        <property type="entry name" value="Transcrip_reg_TACO1-like_dom3"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029072">
        <property type="entry name" value="YebC-like"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR12532">
        <property type="entry name" value="PTHR12532"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01709">
        <property type="entry name" value="Transcrip_reg"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF75625">
        <property type="entry name" value="SSF75625"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01033">
        <property type="entry name" value="TIGR01033"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="4" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 4" id="KW-0804">Transcription</keyword>
    <keyword evidence="2 4" id="KW-0805">Transcription regulation</keyword>
    <feature type="region of interest" description="Disordered" evidence="5">
        <location>
            <begin position="1"/>
            <end position="21"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00008724"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023015"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023163"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00693"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="ABX36157.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="239" mass="26169" checksum="039B25F6F223D9DE" modified="2008-01-15" version="1">MAGHSKWANIQHRKGRQDEKRGKVWTRIIREIMVAARTGGGDLSANPRLRLAVEKAKAANMPADNIKRNIDKATGNLEGVTYEEIRYEGYGIGGAAIIVDTMTDNRVRTVADVRHAFSKYGGNMGTEGSVSFQFKHVGQLIFAPGSDEDQIMEVALEAGAEDVITDDEGAIEVLTAPAEFETVRDALQAKGLTPEVAEVTMRPENTIALQGDDAARMQKLLDMIEDLDDVQDVYHNAEL</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="67" xmlns="http://uniprot.org/uniprot">
    <accession>A9BWE0</accession>
    <name>A9BWE0_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="4">Ribosomal silencing factor RsfS</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="4" type="primary">rsfS</name>
        <name evidence="6" type="ordered locus">Daci_3524</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="7" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="4">Functions as a ribosomal silencing factor. Interacts with ribosomal protein L14 (rplN), blocking formation of intersubunit bridge B8. Prevents association of the 30S and 50S ribosomal subunits and the formation of functional ribosomes, thus repressing translation.</text>
    </comment>
    <comment type="subunit">
        <text evidence="4">Interacts with ribosomal protein L14 (rplN).</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="4">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="1 4">Belongs to the Iojap/RsfS family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX36160.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012205360.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_3524"/>
    <dbReference type="PRIDE" id="A9BWE0"/>
    <dbReference type="EnsemblBacteria" id="ABX36160">
        <property type="protein sequence ID" value="ABX36160"/>
        <property type="gene ID" value="Daci_3524"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_3524"/>
    <dbReference type="eggNOG" id="COG0799">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_092688_0_0_4"/>
    <dbReference type="OMA" id="VAHIMQP"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016779">
        <property type="term" value="F:nucleotidyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0042256">
        <property type="term" value="P:mature ribosome assembly"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0090071">
        <property type="term" value="P:negative regulation of ribosome biogenesis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0017148">
        <property type="term" value="P:negative regulation of translation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.460.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01477">
        <property type="entry name" value="Iojap_RsfS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004394">
        <property type="entry name" value="Iojap/RsfS/C7orf30"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043519">
        <property type="entry name" value="NT_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR21043">
        <property type="entry name" value="PTHR21043"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF81301">
        <property type="entry name" value="SSF81301"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00090">
        <property type="entry name" value="rsfS_iojap_ybeB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="3" id="KW-0460">Magnesium</keyword>
    <keyword evidence="2" id="KW-0548">Nucleotidyltransferase</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4" id="KW-0678">Repressor</keyword>
    <keyword evidence="2" id="KW-0808">Transferase</keyword>
    <keyword evidence="4" id="KW-0810">Translation regulation</keyword>
    <feature type="region of interest" description="Disordered" evidence="5">
        <location>
            <begin position="124"/>
            <end position="154"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="5">
        <location>
            <begin position="166"/>
            <end position="261"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="5">
        <location>
            <begin position="134"/>
            <end position="148"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00010574"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022695"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022842"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01477"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="ABX36160.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="261" mass="26830" checksum="3A0E5D72AD54FA88" modified="2008-01-15" version="1">MTTSTKSDSAAKRDVTKLQRAIVDGLENVKAQDIQVFNTEKLSPLFERVIVAAGTSNRQTKALASSVRDAVKQAGFPVPRQEGEENGEWIIVDCGQAVVHVMQPAIRQYYRLEEIWGETPVRLKLGAPKPTRSAATDKAEEKAKKAASKKAAATAAKPAAKKAASAAAPAAGKKPAAKKAAPAKATAPRSAAAKPAASRTAAAKSAAPKSAAVKSAAAKAPARKTAAPKAIKTVVVNRAPAKPKAGAAAKPAAKRAPRAKA</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-01-19" version="34" xmlns="http://uniprot.org/uniprot">
    <accession>A9BWG5</accession>
    <name>A9BWG5_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_3551</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX36185.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="ABX36185">
        <property type="protein sequence ID" value="ABX36185"/>
        <property type="gene ID" value="Daci_3551"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_3551"/>
    <dbReference type="HOGENOM" id="CLU_1145718_0_0_4"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="10"/>
            <end position="33"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="140"/>
            <end position="195"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="156"/>
            <end position="194"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX36185.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="242" mass="24591" checksum="64A8951F19871DA3" modified="2008-01-15" version="1">MATTILEALRRQNGEEPYAPASSNVTHGTGFGVYRRPETAGTRPGMMQPYAATGPSSFEPAKSLDAGSMRMNAASDPRSLTFGGSTPQPASACVGVGYRLPAPPSASSASNAAPPAVPASFAQAPYADFSAVNDFSQAPTLAPAAPPAPVQPAASTAPSGAVTRDGNSYSGTNVSGDVSINGQVPRNGGGISPRSQQAARGLAYYASEPPPVIGQNRIPQIEAAGLFAKNQPVKQRPSLQLV</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="73" xmlns="http://uniprot.org/uniprot">
    <accession>A9BWM5</accession>
    <name>A9BWM5_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Nitroreductase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ordered locus">Daci_3921</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="6" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>FMN</name>
            <dbReference type="ChEBI" id="CHEBI:58210"/>
        </cofactor>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the nitroreductase family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX36552.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_3921"/>
    <dbReference type="PRIDE" id="A9BWM5"/>
    <dbReference type="EnsemblBacteria" id="ABX36552">
        <property type="protein sequence ID" value="ABX36552"/>
        <property type="gene ID" value="Daci_3921"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_3921"/>
    <dbReference type="eggNOG" id="COG0583">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="eggNOG" id="COG0778">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_926600_0_0_4"/>
    <dbReference type="OMA" id="CLMTRRT"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003700">
        <property type="term" value="F:DNA-binding transcription factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016491">
        <property type="term" value="F:oxidoreductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd02135">
        <property type="entry name" value="YdjA-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.109.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029479">
        <property type="entry name" value="Nitroreductase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000415">
        <property type="entry name" value="Nitroreductase-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000847">
        <property type="entry name" value="Tscrpt_reg_HTH_LysR"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036390">
        <property type="entry name" value="WH_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR026021">
        <property type="entry name" value="YdjA-like"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00126">
        <property type="entry name" value="HTH_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00881">
        <property type="entry name" value="Nitroreductase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46785">
        <property type="entry name" value="SSF46785"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55469">
        <property type="entry name" value="SSF55469"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HTH lysR-type" evidence="3">
        <location>
            <begin position="9"/>
            <end position="62"/>
        </location>
    </feature>
    <feature type="domain" description="Nitroreductase" evidence="4">
        <location>
            <begin position="96"/>
            <end position="252"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001917"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00007118"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF00126"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="Pfam" id="PF00881"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="ABX36552.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="300" mass="32575" checksum="E95806CA6F50CF41" modified="2008-01-15" version="1">MTQKYIPHLLALDRERDWARAAQACGISDNALAQAIRSAEAEFGHALVRAGRPFQGFTPEGEQVLAWARQFVQAVDALKHCFADTRKRAGLAPLLARRSVSPRRLAMPGPDSGDMDLIIEAALCAPDHGALHPWRVLEFPAHQREALACLFEQEKLRRDPLAPADDIRRAREHATRAPALIAFIISPRPRSRVPVREQWLAAGAALGNFLNAAHHLGFGAIVLSGERCFDPALHSALGLREGEHLAGFISLGTITSQPSPRATVSPSCMRTAWQAEQAAAVTAHALLQPDGNHDSHGSDL</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="78" xmlns="http://uniprot.org/uniprot">
    <accession>A9BWN5</accession>
    <name>A9BWN5_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="3">(2Fe-2S)-binding domain protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Daci_3931</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="4" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX36562.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012205756.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_3931"/>
    <dbReference type="PRIDE" id="A9BWN5"/>
    <dbReference type="EnsemblBacteria" id="ABX36562">
        <property type="protein sequence ID" value="ABX36562"/>
        <property type="gene ID" value="Daci_3931"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_3931"/>
    <dbReference type="eggNOG" id="COG2080">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_052511_3_0_4"/>
    <dbReference type="OMA" id="RSCVIPL"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051537">
        <property type="term" value="F:2 iron, 2 sulfur cluster binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016491">
        <property type="term" value="F:oxidoreductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd00207">
        <property type="entry name" value="fer2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.10.20.30">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002888">
        <property type="entry name" value="2Fe-2S-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036884">
        <property type="entry name" value="2Fe-2S-bd_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036010">
        <property type="entry name" value="2Fe-2S_ferredoxin-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001041">
        <property type="entry name" value="2Fe-2S_ferredoxin-type"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006058">
        <property type="entry name" value="2Fe2S_fd_BS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012675">
        <property type="entry name" value="Beta-grasp_dom_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00111">
        <property type="entry name" value="Fer2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01799">
        <property type="entry name" value="Fer2_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47741">
        <property type="entry name" value="SSF47741"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54292">
        <property type="entry name" value="SSF54292"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00197">
        <property type="entry name" value="2FE2S_FER_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51085">
        <property type="entry name" value="2FE2S_FER_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="2Fe-2S ferredoxin-type" evidence="2">
        <location>
            <begin position="1"/>
            <end position="76"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023002"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS51085"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ABX36562.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="195" mass="20526" checksum="542C1379483B4031" modified="2008-01-15" version="1">MKFTLNQQEVEIQGVSPETPLLYVLRNDMQLNGPKFGCGLGECGACAVLIDGKVARSCSVPVSAVQGMKVTTLEGLSQDATQAEHARVARDWEAAHPAAVPGMPAGKPAADAQGKAVYRLHPVQQAFIDEQAAQCGYCTNGMVMALVALFDHKPTATDEEVTQALSGHLCRCGTHVEIMRAAARARVLIAQGGAA</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2021-06-02" version="59" xmlns="http://uniprot.org/uniprot">
    <accession>A9BWR5</accession>
    <name>A9BWR5_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">Antitoxin</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Daci_3961</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="4" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="2">Antitoxin component of a type II toxin-antitoxin (TA) system.</text>
    </comment>
    <comment type="similarity">
        <text evidence="1 2">Belongs to the phD/YefM antitoxin family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX36592.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012205786.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_3961"/>
    <dbReference type="EnsemblBacteria" id="ABX36592">
        <property type="protein sequence ID" value="ABX36592"/>
        <property type="gene ID" value="Daci_3961"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_3961"/>
    <dbReference type="eggNOG" id="COG2161">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_163140_1_3_4"/>
    <dbReference type="OMA" id="MQEWRRL"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006442">
        <property type="entry name" value="Antitoxin_Phd/YefM"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036165">
        <property type="entry name" value="YefM-like_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02604">
        <property type="entry name" value="PhdYeFM_antitox"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF143120">
        <property type="entry name" value="SSF143120"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00009981"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="RuleBase" id="RU362080"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ABX36592.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="86" mass="9611" checksum="E82A1D0F2EECBA8C" modified="2008-01-15" version="1">MKSWPVQDAQDHFNELLEACLTDGPQVLTRRGADTAVLVPMQEWRRLHPAAEPASLKELLLSEVGRADLLIPPRGLAHRRPIEPAN</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2021-06-02" version="55" xmlns="http://uniprot.org/uniprot">
    <accession>A9BWW9</accession>
    <name>A9BWW9_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_4323</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX36954.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012206126.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="ABX36954">
        <property type="protein sequence ID" value="ABX36954"/>
        <property type="gene ID" value="Daci_4323"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_4323"/>
    <dbReference type="eggNOG" id="COG3238">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_068878_1_1_4"/>
    <dbReference type="OMA" id="ALQGPWW"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006750">
        <property type="entry name" value="YdcZ"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR34821">
        <property type="entry name" value="PTHR34821"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04657">
        <property type="entry name" value="DMT_YdcZ"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="41"/>
            <end position="62"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="74"/>
            <end position="96"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="102"/>
            <end position="126"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="138"/>
            <end position="161"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX36954.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="163" mass="16112" checksum="FE5393097090D368" modified="2008-01-15" version="1">MTGKSTFTALAPVALALLAGAILPFQAASNALVGRLLGHPLWGALVSLAVSVMVVVPALWVLRAPAPAMAQAAVGPWWLWIGGVLGAIYVASAAAVTPRLGAGGFLVCVVAGQIVVSVLVDHFGLMGLGARPVNATRLAGVALILGGVLLVVQGGTARAAAAP</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="59" xmlns="http://uniprot.org/uniprot">
    <accession>A9BXF0</accession>
    <name>A9BXF0_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">SMP-30/Gluconolaconase/LRE domain protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_5597</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX38226.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012207395.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_5597"/>
    <dbReference type="PRIDE" id="A9BXF0"/>
    <dbReference type="EnsemblBacteria" id="ABX38226">
        <property type="protein sequence ID" value="ABX38226"/>
        <property type="gene ID" value="Daci_5597"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_5597"/>
    <dbReference type="eggNOG" id="COG3386">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_036110_3_1_4"/>
    <dbReference type="OMA" id="AGTMRYD"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.120.10.30">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011042">
        <property type="entry name" value="6-blade_b-propeller_TolB-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013658">
        <property type="entry name" value="SGL"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005511">
        <property type="entry name" value="SMP-30"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08450">
        <property type="entry name" value="SGL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR01790">
        <property type="entry name" value="SMP30FAMILY"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="SGL" evidence="1">
        <location>
            <begin position="13"/>
            <end position="264"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF08450"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX38226.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="300" mass="32888" checksum="E86C94C4B3A2F781" modified="2008-01-15" version="1">MAVQRIPVPPSALGESPFWHPQEHRLYWCDIQDRHIHSWEPATGLHRSWATPSEPGCCAPTDRGRIVVGLRDGFGLLDTATGHTEMIARLDHDPQQLRLNDGRCDRAGRLWAGSLFSPKTAPDAALWCLRADGAGGYAVQRMAGDCTTANGLAFSPDDDWMYWADTPAHRIDRFAFDLDSGTLGTRSLWKAFAPKAEGRLYGGRPDGASVDVRGNYWVAMYEGGCVLQLSPEGDVLQRLDTPVRCPTMVCFGGEDLRTLYITSAGHGRPDPERSAQVPAGALMECRVDVPGLPVNSFREA</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="83" xmlns="http://uniprot.org/uniprot">
    <accession>A9BXJ4</accession>
    <name>A9BXJ4_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Transcriptional regulator, LysR family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Daci_5641</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="4" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the LysR transcriptional regulatory family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX38270.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012207439.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_5641"/>
    <dbReference type="PRIDE" id="A9BXJ4"/>
    <dbReference type="EnsemblBacteria" id="ABX38270">
        <property type="protein sequence ID" value="ABX38270"/>
        <property type="gene ID" value="Daci_5641"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_5641"/>
    <dbReference type="eggNOG" id="COG0583">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_039613_37_1_4"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003700">
        <property type="term" value="F:DNA-binding transcription factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005119">
        <property type="entry name" value="LysR_subst-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000847">
        <property type="entry name" value="Tscrpt_reg_HTH_LysR"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036390">
        <property type="entry name" value="WH_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00126">
        <property type="entry name" value="HTH_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03466">
        <property type="entry name" value="LysR_substrate"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00039">
        <property type="entry name" value="HTHLYSR"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46785">
        <property type="entry name" value="SSF46785"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50931">
        <property type="entry name" value="HTH_LYSR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HTH lysR-type" evidence="2">
        <location>
            <begin position="7"/>
            <end position="64"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00009437"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS50931"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ABX38270.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="294" mass="32621" checksum="E3EFE347B098831D" modified="2008-01-15" version="1">MATPHRLSLNGLRAFEATARLRSFSAAAEELSVTHGAVSRHIRTLEDSLGLALLQRTAQGATPTNEGLRLAEGLSTAFGLIQSSVEQLKPGPLTLACSESIMMYWLIPRLNRFKEINPEVELRFNMSHGPIDFAHDKVSVAIRLSSIDPPKEAVRADVAHEWIGPVCSPGYLQNHRIESFEDLARARLMISLTRPTAWADWASCSGQMSPELRVDESFAHFYLLIQGARCGLGMANVPHMLVRDDLMSWTLVAPMGFVCGPNRLAIWTAPHLSRRPDVVKLVDWLHDELRASEP</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="57" xmlns="http://uniprot.org/uniprot">
    <accession>A9BXJ8</accession>
    <name>A9BXJ8_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="10">TRAP C4-dicarboxylate transport system permease DctM subunit</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="10" type="ordered locus">Daci_5645</name>
    </gene>
    <organism evidence="10 11">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
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                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
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            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
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        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
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        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
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            <strain evidence="11">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
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            <topology evidence="2">Multi-pass membrane protein</topology>
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        <subcellularLocation>
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        </subcellularLocation>
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    <dbReference type="EnsemblBacteria" id="ABX38274">
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        <property type="gene ID" value="Daci_5645"/>
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    <dbReference type="KEGG" id="dac:Daci_5645"/>
    <dbReference type="eggNOG" id="COG1593">
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    </dbReference>
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        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
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</entry>
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                <person name="Lowry S."/>
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                <person name="Larimer F."/>
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                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
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        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
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</entry>
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                <person name="Larimer F."/>
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                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
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        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">DSM 14801 / SPH-1</strain>
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    </reference>
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    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
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    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="217"/>
            <end position="242"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="262"/>
            <end position="288"/>
        </location>
    </feature>
    <feature type="domain" description="ABC transmembrane type-1" evidence="6">
        <location>
            <begin position="100"/>
            <end position="288"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="RuleBase" id="RU363032"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="PROSITE" id="PS50928"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="ABX38297.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="302" mass="32128" checksum="E8FE70AF6882E60B" modified="2008-01-15" version="1">MNAITPPSVSVASVAAPQAAAHAEHPAREALRMFLRNPSAIAGMAMLLFVLLVAIAGPWIWPADPFEIRTMPLSPPFSEEAWLGSDQLGRDVLTGIIHGGRATLMVGAFAALLSVCIGVTLGAMAGYYGGRVDALLMRVTEFFQVLPALLFAMVVVTLFSPSLVTVTLAIGSVSWPATARLTRAEFMRIRQLEFVRAESAIGARHGRIIWKVILPNALPPLVVSATLAVGAAILFEAGLSFLGLGDPNQMSWGLMIGSARQYLLSCWWAVAFPGAAIFVTVLAVSLIGDGLNDALNPKLRER</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="87" xmlns="http://uniprot.org/uniprot">
    <accession>A9BXM4</accession>
    <name>A9BXM4_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Transcriptional regulator, GntR family with aminotransferase domain</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Daci_5672</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="4" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">In the C-terminal section; belongs to the class-I pyridoxal-phosphate-dependent aminotransferase family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX38300.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012207469.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_5672"/>
    <dbReference type="PRIDE" id="A9BXM4"/>
    <dbReference type="EnsemblBacteria" id="ABX38300">
        <property type="protein sequence ID" value="ABX38300"/>
        <property type="gene ID" value="Daci_5672"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_5672"/>
    <dbReference type="eggNOG" id="COG1167">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_017584_0_1_4"/>
    <dbReference type="OMA" id="RIGFMVM"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003700">
        <property type="term" value="F:DNA-binding transcription factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030170">
        <property type="term" value="F:pyridoxal phosphate binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008483">
        <property type="term" value="F:transaminase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009058">
        <property type="term" value="P:biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd07377">
        <property type="entry name" value="WHTH_GntR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.640.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004839">
        <property type="entry name" value="Aminotransferase_I/II"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015424">
        <property type="entry name" value="PyrdxlP-dep_Trfase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015421">
        <property type="entry name" value="PyrdxlP-dep_Trfase_major"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000524">
        <property type="entry name" value="Tscrpt_reg_HTH_GntR"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036390">
        <property type="entry name" value="WH_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00155">
        <property type="entry name" value="Aminotran_1_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00392">
        <property type="entry name" value="GntR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00345">
        <property type="entry name" value="HTH_GNTR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46785">
        <property type="entry name" value="SSF46785"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53383">
        <property type="entry name" value="SSF53383"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50949">
        <property type="entry name" value="HTH_GNTR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-0032">Aminotransferase</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="HTH gntR-type" evidence="2">
        <location>
            <begin position="25"/>
            <end position="93"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00005384"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS50949"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ABX38300.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="508" mass="56581" checksum="D80B3ED16666BA04" modified="2008-01-15" version="1">MSTPSATDPRHQWARLFALPEQPGLPLKDRLRLALVQPILEGRLPPGAAMPPSRELSRLLEVSRNTVTTVYEQLVDEGFLEARPRSGVFVARDSRLAGVDGALALPATSPGEPAPDWSARVLRSLTDRHTLSKPLQWREYPYPFVYGMHDPALFPTEGFRECCTRSLARAQLPHWTPDFETDDVPDLIEQIRLRLLPRRGVFALKEEILVTVGAQQAFYLLADALLAPSQRLGFEEPGHPHARNTFSLRRPHWVPVAVDGEGVVVDGLPPLDYLFVTPSHQSPTTVTLSLQRREQLLRRAEQGDFVIIEDDYEAENLYQGTPMPALKSLDKGGRVIYVGSLSKSLSPALRLGYIVAPRALIDELRVLRHAMVRHPSAFLQHAYALFLSLGHHEAHARRVNQAMLERVAQVDRSLRAHLPDFIFRQPQGGASLWVQAPAWLDADALAAVARRHGVLIEAGSAFFATPRQPCPFFRLRLSSIALDQIDAGIQALARAVMELDSARNHCCA</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="62" xmlns="http://uniprot.org/uniprot">
    <accession>A9BY88</accession>
    <name>A9BY88_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Phospholipid/glycerol acyltransferase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_1583</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX34227.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012203512.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_1583"/>
    <dbReference type="PRIDE" id="A9BY88"/>
    <dbReference type="EnsemblBacteria" id="ABX34227">
        <property type="protein sequence ID" value="ABX34227"/>
        <property type="gene ID" value="Daci_1583"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_1583"/>
    <dbReference type="eggNOG" id="COG0204">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_027938_0_1_4"/>
    <dbReference type="OMA" id="PMLWVSN"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016746">
        <property type="term" value="F:acyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002123">
        <property type="entry name" value="Plipid/glycerol_acylTrfase"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01553">
        <property type="entry name" value="Acyltransferase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00563">
        <property type="entry name" value="PlsC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0012">Acyltransferase</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="PlsC" evidence="1">
        <location>
            <begin position="71"/>
            <end position="183"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="SMART" id="SM00563"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX34227.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="249" mass="27779" checksum="F97F546E36615AF2" modified="2008-01-15" version="1">MSRLRRGGRATLRAARLFGHVCKGLWIVALRFPQLPEARQHAHVQAWALQLLAHAGVRLEIQGEPPRQGPMLMVSNHISWLDIPVLHAARHCRFISKSDVKGWPLIGTLATAAGTLYIERTSRRDARRMVQSMEESLQRREILAIFPEGTTGDGRKLLPFHANLLQAAVQIDAPVLPVGLRFIDGATGQISHAPSYEGDETLLGSIWRTLCADDLVAVVHYGQPQTAEGRDRRVWAQDLHAEVDRLRQA</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-01-19" version="40" xmlns="http://uniprot.org/uniprot">
    <accession>A9BYE3</accession>
    <name>A9BYE3_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Daci_1639</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="2" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX34282.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012203567.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_1639"/>
    <dbReference type="EnsemblBacteria" id="ABX34282">
        <property type="protein sequence ID" value="ABX34282"/>
        <property type="gene ID" value="Daci_1639"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_1639"/>
    <dbReference type="eggNOG" id="ENOG502ZEZQ">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_1966947_0_0_4"/>
    <dbReference type="OMA" id="EDICGDD"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR021508">
        <property type="entry name" value="Gp17-like"/>
    </dbReference>
    <dbReference type="Pfam" id="PF11367">
        <property type="entry name" value="DUF3168"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ABX34282.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="127" mass="13792" checksum="96520A34BD4E7146" modified="2008-01-15" version="1">MTQLSVSQQITAALGPIVAGRCYQRTFLQSGGKLPEWPAVRFVFVSASMAETICGDGGDDAADYRVQIDLANSRKAGEVKFQELRAQILAAMSALGPTFSWAGQSDTYDAETDTNRAQLDFMVYQSN</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="92" xmlns="http://uniprot.org/uniprot">
    <accession>A9BYG8</accession>
    <name>A9BYG8_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">Histidine kinase</fullName>
            <ecNumber evidence="2">2.7.13.3</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="9" type="ordered locus">Daci_1871</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="9 10" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="10" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>ATP + protein L-histidine = ADP + protein N-phospho-L-histidine.</text>
            <dbReference type="EC" id="2.7.13.3"/>
        </reaction>
    </comment>
    <dbReference type="EC" id="2.7.13.3" evidence="2"/>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX34511.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012203796.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_1871"/>
    <dbReference type="PRIDE" id="A9BYG8"/>
    <dbReference type="EnsemblBacteria" id="ABX34511">
        <property type="protein sequence ID" value="ABX34511"/>
        <property type="gene ID" value="Daci_1871"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_1871"/>
    <dbReference type="eggNOG" id="COG2205">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="eggNOG" id="COG3829">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_373310_0_0_4"/>
    <dbReference type="OMA" id="FENTEMA"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000155">
        <property type="term" value="F:phosphorelay sensor kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd00082">
        <property type="entry name" value="HisKA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="CDD" id="cd00130">
        <property type="entry name" value="PAS"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.565.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003594">
        <property type="entry name" value="HATPase_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036890">
        <property type="entry name" value="HATPase_C_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005467">
        <property type="entry name" value="His_kinase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003661">
        <property type="entry name" value="HisK_dim/P"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036097">
        <property type="entry name" value="HisK_dim/P_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001610">
        <property type="entry name" value="PAC"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000014">
        <property type="entry name" value="PAS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000700">
        <property type="entry name" value="PAS-assoc_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035965">
        <property type="entry name" value="PAS-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013656">
        <property type="entry name" value="PAS_4"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004358">
        <property type="entry name" value="Sig_transdc_His_kin-like_C"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02518">
        <property type="entry name" value="HATPase_c"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00512">
        <property type="entry name" value="HisKA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08448">
        <property type="entry name" value="PAS_4"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00344">
        <property type="entry name" value="BCTRLSENSOR"/>
    </dbReference>
    <dbReference type="SMART" id="SM00387">
        <property type="entry name" value="HATPase_c"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00388">
        <property type="entry name" value="HisKA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00086">
        <property type="entry name" value="PAC"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SMART" id="SM00091">
        <property type="entry name" value="PAS"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47384">
        <property type="entry name" value="SSF47384"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55785">
        <property type="entry name" value="SSF55785"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55874">
        <property type="entry name" value="SSF55874"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00229">
        <property type="entry name" value="sensory_box"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50109">
        <property type="entry name" value="HIS_KIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50113">
        <property type="entry name" value="PAC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50112">
        <property type="entry name" value="PAS"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="9" id="KW-0418">Kinase</keyword>
    <keyword evidence="5" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-0597">Phosphoprotein</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="9" id="KW-0808">Transferase</keyword>
    <keyword evidence="5" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="5" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="21"/>
            <end position="42"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="302"/>
            <end position="324"/>
        </location>
    </feature>
    <feature type="domain" description="PAS" evidence="7">
        <location>
            <begin position="347"/>
            <end position="392"/>
        </location>
    </feature>
    <feature type="domain" description="PAS" evidence="7">
        <location>
            <begin position="478"/>
            <end position="540"/>
        </location>
    </feature>
    <feature type="domain" description="PAC" evidence="8">
        <location>
            <begin position="544"/>
            <end position="596"/>
        </location>
    </feature>
    <feature type="domain" description="Histidine kinase" evidence="6">
        <location>
            <begin position="614"/>
            <end position="831"/>
        </location>
    </feature>
    <feature type="coiled-coil region" evidence="4">
        <location>
            <begin position="330"/>
            <end position="357"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00000085"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00012438"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022553"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="PROSITE" id="PS50109"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="PROSITE" id="PS50112"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="PROSITE" id="PS50113"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="ABX34511.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="842" mass="91859" checksum="EA32CD24CC4AF51C" modified="2008-01-15" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="60" xmlns="http://uniprot.org/uniprot">
    <accession>A9BYN0</accession>
    <name>A9BYN0_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">SF4 helicase domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_1933</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX34573.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
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    </dbReference>
    <dbReference type="STRING" id="398578.Daci_1933"/>
    <dbReference type="PRIDE" id="A9BYN0"/>
    <dbReference type="EnsemblBacteria" id="ABX34573">
        <property type="protein sequence ID" value="ABX34573"/>
        <property type="gene ID" value="Daci_1933"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_1933"/>
    <dbReference type="eggNOG" id="COG0305">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_069769_0_0_4"/>
    <dbReference type="OMA" id="WLYDQQG"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043139">
        <property type="term" value="F:5'-3' DNA helicase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003697">
        <property type="term" value="F:single-stranded DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006260">
        <property type="term" value="P:DNA replication"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
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        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007694">
        <property type="entry name" value="DNA_helicase_DnaB-like_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027032">
        <property type="entry name" value="Twinkle-like"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR12873">
        <property type="entry name" value="PTHR12873"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03796">
        <property type="entry name" value="DnaB_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51199">
        <property type="entry name" value="SF4_HELICASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="SF4 helicase" evidence="1">
        <location>
            <begin position="41"/>
            <end position="313"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS51199"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX34573.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="323" mass="36532" checksum="34F40F8307BE6417" modified="2008-01-15" version="1">MANVFMPDDIDFAAYEHETDAQQKVLPASSWVQELIDRIRNPIRAKQAFMPWRKTAQLVQFRPGEVTLWGGANGNGKSLVTGQVALSLCGQGERVAIASFEMKPIKTLERMGRQWSGTNPAHPAYAGNDDGQRILIDTYEQFRDWTDNKLWLYDQQGTVTTAQVCAVVRYAAVELKVTHFVVDSLMKCVQGEDDYNGQKLFVDELTAIARDHGIHIHLIHHIKKPASEDHKPNKYDMKGSGAITDQVDNVIAVWRNKPKERKRDEGLLTEEADVKEPDCLLICDKQRNGEWEGSIGLWFERDSQQFVASHGEEPLVLYTPEVA</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="32" xmlns="http://uniprot.org/uniprot">
    <accession>A9BYN1</accession>
    <name>A9BYN1_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Daci_1934</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="2" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX34574.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_1934"/>
    <dbReference type="PRIDE" id="A9BYN1"/>
    <dbReference type="EnsemblBacteria" id="ABX34574">
        <property type="protein sequence ID" value="ABX34574"/>
        <property type="gene ID" value="Daci_1934"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_1934"/>
    <dbReference type="HOGENOM" id="CLU_136676_0_0_4"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ABX34574.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="165" mass="18215" checksum="BE71F47F9065A9D5" modified="2008-01-15" version="1">MSTEREMLEAAAKHVGISGDYEDGKIWCLNFIGNLVAWDPRGQGHCSQELQAVCRISVEHSPADEKRPWVCASVSNHLGRAEQFMEDVPDESQRADRMRLAILRCAAAQPPANGCERTESDANGCVGIDRERMEKALASETFTLPNGLSESEIVDHFTRAAKEQA</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="48" xmlns="http://uniprot.org/uniprot">
    <accession>A9BYV6</accession>
    <name>A9BYV6_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Daci_2211</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="2" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX34851.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012204134.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_2211"/>
    <dbReference type="PRIDE" id="A9BYV6"/>
    <dbReference type="EnsemblBacteria" id="ABX34851">
        <property type="protein sequence ID" value="ABX34851"/>
        <property type="gene ID" value="Daci_2211"/>
    </dbReference>
    <dbReference type="GeneID" id="60686605"/>
    <dbReference type="KEGG" id="dac:Daci_2211"/>
    <dbReference type="eggNOG" id="ENOG5033AW6">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_181359_0_0_4"/>
    <dbReference type="OMA" id="HAPHFDP"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ABX34851.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="73" mass="8297" checksum="7EC1BF600EA85A39" modified="2008-01-15" version="1">MAETTYHAPVYEPTVDELEVLKKLEMGEPVSLESAAREHLSKRLRERGLVEVDSSHQWHITAAGRAQIRRTDA</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="66" xmlns="http://uniprot.org/uniprot">
    <accession>A9BZ03</accession>
    <name>A9BZ03_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Acriflavin resistance protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_2258</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
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                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX34898.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012204181.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_2258"/>
    <dbReference type="PRIDE" id="A9BZ03"/>
    <dbReference type="EnsemblBacteria" id="ABX34898">
        <property type="protein sequence ID" value="ABX34898"/>
        <property type="gene ID" value="Daci_2258"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_2258"/>
    <dbReference type="eggNOG" id="COG0841">
        <property type="taxonomic scope" value="Bacteria"/>
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    <dbReference type="OMA" id="GVVMKNT"/>
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        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="GO" id="GO:0022857">
        <property type="term" value="F:transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.2090.10">
        <property type="match status" value="2"/>
    </dbReference>
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        <property type="entry name" value="AcrB_DN_DC_subdom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001036">
        <property type="entry name" value="Acrflvin-R"/>
    </dbReference>
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        <property type="entry name" value="PTHR32063"/>
        <property type="match status" value="1"/>
    </dbReference>
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        <property type="entry name" value="ACR_tran"/>
        <property type="match status" value="1"/>
    </dbReference>
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        <property type="entry name" value="ACRIFLAVINRP"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF82714">
        <property type="entry name" value="SSF82714"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="predicted"/>
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    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
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        <location>
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            <end position="36"/>
        </location>
    </feature>
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        <location>
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            <end position="357"/>
        </location>
    </feature>
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        <location>
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            <end position="385"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="391"/>
            <end position="414"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="435"/>
            <end position="455"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="467"/>
            <end position="494"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="870"/>
            <end position="887"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="920"/>
            <end position="945"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="965"/>
            <end position="986"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="998"/>
            <end position="1024"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX34898.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="1053" mass="113102" checksum="E7D89D043B4FA1ED" modified="2008-01-15" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="75" xmlns="http://uniprot.org/uniprot">
    <accession>A9BZ90</accession>
    <name>A9BZ90_DELAS</name>
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        <submittedName>
            <fullName evidence="8">ABC transporter related</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="8" type="ordered locus">Daci_2552</name>
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    <organism evidence="8 9">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
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            <taxon>Bacteria</taxon>
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            <taxon>Betaproteobacteria</taxon>
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    <reference evidence="8 9" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
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        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
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            <strain evidence="9">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="9" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX35190.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012204469.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_2552"/>
    <dbReference type="PRIDE" id="A9BZ90"/>
    <dbReference type="EnsemblBacteria" id="ABX35190">
        <property type="protein sequence ID" value="ABX35190"/>
        <property type="gene ID" value="Daci_2552"/>
    </dbReference>
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        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
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        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003593">
        <property type="entry name" value="AAA+_ATPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003439">
        <property type="entry name" value="ABC_transporter-like_ATP-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR032823">
        <property type="entry name" value="BCA_ABC_TP_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00005">
        <property type="entry name" value="ABC_tran"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12399">
        <property type="entry name" value="BCA_ABC_TP_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00382">
        <property type="entry name" value="AAA"/>
        <property type="match status" value="1"/>
    </dbReference>
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        <property type="entry name" value="SSF52540"/>
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    </dbReference>
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        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
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    <keyword evidence="5" id="KW-0472">Membrane</keyword>
    <keyword evidence="2 6" id="KW-0547">Nucleotide-binding</keyword>
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        <location>
            <begin position="2"/>
            <end position="249"/>
        </location>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <begin position="34"/>
            <end position="41"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
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        <source>
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        </source>
    </evidence>
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        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022967"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00434"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="PROSITE" id="PS50893"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="ABX35190.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="260" mass="28114" checksum="C6C8CE836FF2FC8E" modified="2008-01-15" version="1">MLRTEDLTIRFGGHVAVNGVSCAFEPGTLTAIVGPNGAGKTTYFNLISGQLKATAGRVLLGGRELTGLAPSARTRAGLGRAFQLTNLFPHLSVLENVRLAVQARDEGPHRRGLNLWSIWSDHRALTQRALHILDQVALSARRDEAVAALPHGDQRKLEVALLMALEPQVYMFDEPTAGMSHDEAPVILDLIRKLKQDRSKIILLVEHKMDVVRELADRIIVLTNGTLVADGPPAEVIASPVVQQAYLGVVPEQGAVKEAA</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-05-25" version="78" xmlns="http://uniprot.org/uniprot">
    <accession>A9BZN4</accession>
    <name>A9BZN4_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">Carboxylic ester hydrolase</fullName>
            <ecNumber evidence="2">3.1.1.-</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="4" type="ordered locus">Daci_3304</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
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            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="5" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1 2">Belongs to the type-B carboxylesterase/lipase family.</text>
    </comment>
    <dbReference type="EC" id="3.1.1.-" evidence="2"/>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX35942.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012205142.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_3304"/>
    <dbReference type="ESTHER" id="delas-a9bzn4">
        <property type="family name" value="Carb_B_Bacteria"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="ABX35942">
        <property type="protein sequence ID" value="ABX35942"/>
        <property type="gene ID" value="Daci_3304"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_3304"/>
    <dbReference type="eggNOG" id="COG2272">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_006586_16_0_4"/>
    <dbReference type="OMA" id="WEPYTLP"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016787">
        <property type="term" value="F:hydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.1820">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029058">
        <property type="entry name" value="AB_hydrolase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002018">
        <property type="entry name" value="CarbesteraseB"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019826">
        <property type="entry name" value="Carboxylesterase_B_AS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019819">
        <property type="entry name" value="Carboxylesterase_B_CS"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00135">
        <property type="entry name" value="COesterase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53474">
        <property type="entry name" value="SSF53474"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00122">
        <property type="entry name" value="CARBOXYLESTERASE_B_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00941">
        <property type="entry name" value="CARBOXYLESTERASE_B_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="2">
        <location>
            <begin position="1"/>
            <end position="24"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5005122100" description="Carboxylic ester hydrolase" evidence="2">
        <location>
            <begin position="25"/>
            <end position="570"/>
        </location>
    </feature>
    <feature type="domain" description="COesterase" evidence="3">
        <location>
            <begin position="38"/>
            <end position="552"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00005964"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="RuleBase" id="RU361235"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF00135"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="ABX35942.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="570" mass="59744" checksum="50555A2A46F4A321" modified="2008-01-15" version="1"> </sequence>
</entry>
<entry dataset="Swiss-Prot" created="2011-05-31" modified="2022-08-03" version="73" xmlns="http://uniprot.org/uniprot">
    <accession>A9BZW2</accession>
    <name>SMC_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Chromosome partition protein Smc</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="1" type="primary">smc</name>
        <name type="ordered locus">Daci_3590</name>
    </gene>
    <organism>
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference key="1">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain>DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="1">Required for chromosome condensation and partitioning.</text>
    </comment>
    <comment type="subunit">
        <text evidence="1">Homodimer.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="domain">
        <text evidence="1">Contains large globular domains required for ATP hydrolysis at each terminus and a third globular domain forming a flexible SMC hinge near the middle of the molecule. These domains are separated by coiled-coil structures.</text>
    </comment>
    <comment type="similarity">
        <text evidence="1">Belongs to the SMC family.</text>
    </comment>
    <comment type="sequence caution" evidence="3">
        <conflict type="erroneous initiation">
            <sequence resource="EMBL-CDS" id="ABX36224" version="1"/>
        </conflict>
        <text>Extended N-terminus.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX36224.1"/>
        <property type="status" value="ALT_INIT"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_043781925.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A9BZW2"/>
    <dbReference type="SMR" id="A9BZW2"/>
    <dbReference type="STRING" id="398578.Daci_3590"/>
    <dbReference type="PRIDE" id="A9BZW2"/>
    <dbReference type="EnsemblBacteria" id="ABX36224">
        <property type="protein sequence ID" value="ABX36224"/>
        <property type="gene ID" value="Daci_3590"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_3590"/>
    <dbReference type="eggNOG" id="COG1196">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_001042_2_2_4"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005694">
        <property type="term" value="C:chromosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016887">
        <property type="term" value="F:ATP hydrolysis activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030261">
        <property type="term" value="P:chromosome condensation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006260">
        <property type="term" value="P:DNA replication"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0007062">
        <property type="term" value="P:sister chromatid cohesion"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01894">
        <property type="entry name" value="Smc_prok"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003395">
        <property type="entry name" value="RecF/RecN/SMC_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR024704">
        <property type="entry name" value="SMC"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010935">
        <property type="entry name" value="SMC_hinge"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036277">
        <property type="entry name" value="SMC_hinge_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011890">
        <property type="entry name" value="SMC_prok"/>
    </dbReference>
    <dbReference type="Pfam" id="PF06470">
        <property type="entry name" value="SMC_hinge"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02463">
        <property type="entry name" value="SMC_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF005719">
        <property type="entry name" value="SMC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00968">
        <property type="entry name" value="SMC_hinge"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF75553">
        <property type="entry name" value="SSF75553"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR02168">
        <property type="entry name" value="SMC_prok_B"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword id="KW-0067">ATP-binding</keyword>
    <keyword id="KW-0175">Coiled coil</keyword>
    <keyword id="KW-0963">Cytoplasm</keyword>
    <keyword id="KW-0238">DNA-binding</keyword>
    <keyword id="KW-0547">Nucleotide-binding</keyword>
    <keyword id="KW-1185">Reference proteome</keyword>
    <feature type="chain" id="PRO_0000409270" description="Chromosome partition protein Smc">
        <location>
            <begin position="1"/>
            <end position="1175"/>
        </location>
    </feature>
    <feature type="domain" description="SMC hinge">
        <location>
            <begin position="524"/>
            <end position="625"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="807"/>
            <end position="849"/>
        </location>
    </feature>
    <feature type="coiled-coil region" evidence="1">
        <location>
            <begin position="170"/>
            <end position="504"/>
        </location>
    </feature>
    <feature type="coiled-coil region" evidence="1">
        <location>
            <begin position="684"/>
            <end position="918"/>
        </location>
    </feature>
    <feature type="coiled-coil region" evidence="1">
        <location>
            <begin position="944"/>
            <end position="1022"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="2">
        <location>
            <begin position="828"/>
            <end position="842"/>
        </location>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <begin position="32"/>
            <end position="39"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000255" key="1">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01894"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000305" key="3"/>
    <sequence length="1175" mass="131260" checksum="8E03C4D3CECA8C5C" modified="2011-05-31" version="2"> </sequence>
</entry>
<entry dataset="Swiss-Prot" created="2009-03-24" modified="2022-08-03" version="72" xmlns="http://uniprot.org/uniprot">
    <accession>A9C021</accession>
    <name>RL36_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">50S ribosomal protein L36</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="1" type="primary">rpmJ</name>
        <name type="ordered locus">Daci_3651</name>
    </gene>
    <organism>
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference key="1">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain>DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the bacterial ribosomal protein bL36 family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX36283.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012205479.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A9C021"/>
    <dbReference type="SMR" id="A9C021"/>
    <dbReference type="STRING" id="398578.Daci_3651"/>
    <dbReference type="PRIDE" id="A9C021"/>
    <dbReference type="EnsemblBacteria" id="ABX36283">
        <property type="protein sequence ID" value="ABX36283"/>
        <property type="gene ID" value="Daci_3651"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_3651"/>
    <dbReference type="eggNOG" id="COG0257">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_135723_3_2_4"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005840">
        <property type="term" value="C:ribosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003735">
        <property type="term" value="F:structural constituent of ribosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006412">
        <property type="term" value="P:translation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00251">
        <property type="entry name" value="Ribosomal_L36"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000473">
        <property type="entry name" value="Ribosomal_L36"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035977">
        <property type="entry name" value="Ribosomal_L36_sp"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00444">
        <property type="entry name" value="Ribosomal_L36"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF57840">
        <property type="entry name" value="SSF57840"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01022">
        <property type="entry name" value="rpmJ_bact"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00828">
        <property type="entry name" value="RIBOSOMAL_L36"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword id="KW-1185">Reference proteome</keyword>
    <keyword id="KW-0687">Ribonucleoprotein</keyword>
    <keyword id="KW-0689">Ribosomal protein</keyword>
    <feature type="chain" id="PRO_1000101023" description="50S ribosomal protein L36">
        <location>
            <begin position="1"/>
            <end position="49"/>
        </location>
    </feature>
    <evidence type="ECO:0000255" key="1">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00251"/>
        </source>
    </evidence>
    <sequence length="49" mass="5781" checksum="279A82E8F4513DFD" modified="2008-01-15" version="1">MQVLSSLKEAKLRHRDCQVVRRRGRIYVICKSNPRFKARQGGARNRRKG</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="75" xmlns="http://uniprot.org/uniprot">
    <accession>A9C0H8</accession>
    <name>A9C0H8_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="3 7">Magnesium transport protein CorA</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="7" type="primary">corA</name>
        <name evidence="8" type="ordered locus">Daci_4421</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="9" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="7">Mediates influx of magnesium ions.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1 7">Membrane</location>
            <topology evidence="1 7">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2 7">Belongs to the CorA metal ion transporter (MIT) (TC 1.A.35) family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX37051.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012206223.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_4421"/>
    <dbReference type="PRIDE" id="A9C0H8"/>
    <dbReference type="EnsemblBacteria" id="ABX37051">
        <property type="protein sequence ID" value="ABX37051"/>
        <property type="gene ID" value="Daci_4421"/>
    </dbReference>
    <dbReference type="GeneID" id="60689036"/>
    <dbReference type="KEGG" id="dac:Daci_4421"/>
    <dbReference type="eggNOG" id="COG0598">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_007127_0_2_4"/>
    <dbReference type="OMA" id="IQKYFRD"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015087">
        <property type="term" value="F:cobalt ion transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015095">
        <property type="term" value="F:magnesium ion transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045861">
        <property type="entry name" value="CorA_cytoplasmic_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045863">
        <property type="entry name" value="CorA_TM1_TM2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004488">
        <property type="entry name" value="Mg/Co-transport_prot_CorA"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002523">
        <property type="entry name" value="MgTranspt_CorA/ZnTranspt_ZntB"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01544">
        <property type="entry name" value="CorA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF143865">
        <property type="entry name" value="SSF143865"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF144083">
        <property type="entry name" value="SSF144083"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00383">
        <property type="entry name" value="corA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="7" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="7" id="KW-0406">Ion transport</keyword>
    <keyword evidence="7" id="KW-0460">Magnesium</keyword>
    <keyword evidence="6 7" id="KW-0472">Membrane</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4 7" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="5 7" id="KW-1133">Transmembrane helix</keyword>
    <keyword evidence="7" id="KW-0813">Transport</keyword>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="267"/>
            <end position="286"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="298"/>
            <end position="316"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00009765"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00019439"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="RuleBase" id="RU362010"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="ABX37051.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="324" mass="36444" checksum="EA6E35C7CA06139D" modified="2008-01-15" version="1">MLINCVAYENGAKLADIPVADISNYIERPGCFVWVALADATPAELEEMRQEFGLHALAVEDALHGHQRPKLEEYGSSLFAVMHLLEPEPERPGHFNHGEVDVFVGSNYVLSVRNRSKRGFLGVRERCESEPELLRHGSGFVLYALMDAVVDRYFPIIDALEVELEQIEQQIFTKGAARDNIKQLYELKGRAMDLKHAVAPLLEAVGKLNGGRVPQICVGSRDYFRDVMDHLGRINAQIDTMRDTVGTAIQVNLSMVSIEENEVTKRLAAWASIFAICTAFFGVWGMNFENMPELKWQYGYPAALLFVLGVCGLLYYKFRKAGWL</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="76" xmlns="http://uniprot.org/uniprot">
    <accession>A9C0Z7</accession>
    <name>A9C0Z7_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Transcriptional regulator, GntR family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ordered locus">Daci_5832</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="6" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX38460.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_5832"/>
    <dbReference type="PRIDE" id="A9C0Z7"/>
    <dbReference type="EnsemblBacteria" id="ABX38460">
        <property type="protein sequence ID" value="ABX38460"/>
        <property type="gene ID" value="Daci_5832"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_5832"/>
    <dbReference type="eggNOG" id="COG1802">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_017584_5_1_4"/>
    <dbReference type="OMA" id="QEHWAMI"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003700">
        <property type="term" value="F:DNA-binding transcription factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.120.530">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011711">
        <property type="entry name" value="GntR_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008920">
        <property type="entry name" value="TF_FadR/GntR_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000524">
        <property type="entry name" value="Tscrpt_reg_HTH_GntR"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036390">
        <property type="entry name" value="WH_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07729">
        <property type="entry name" value="FCD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00392">
        <property type="entry name" value="GntR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00895">
        <property type="entry name" value="FCD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00345">
        <property type="entry name" value="HTH_GNTR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46785">
        <property type="entry name" value="SSF46785"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48008">
        <property type="entry name" value="SSF48008"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50949">
        <property type="entry name" value="HTH_GNTR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0804">Transcription</keyword>
    <keyword evidence="1" id="KW-0805">Transcription regulation</keyword>
    <feature type="domain" description="HTH gntR-type" evidence="4">
        <location>
            <begin position="48"/>
            <end position="115"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023015"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023163"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="PROSITE" id="PS50949"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="ABX38460.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="259" mass="28975" checksum="E6E8B98E4F78AB7A" modified="2008-01-15" version="1">MPGSAARPPCPVRAISSDKMAFLSQPPVLMVAAASLPISLDAEPAPAADALGAMVAALEEDVVFGRLHPRERLVEDDLMARFDVKRHIAREALAALDRMGLIERRKNVGALVRSFSTQEVQELYELRGMLEVEAARKIPLPVPAERLERLTSIQQQHDAAVAEGNARLVFRINLAFHQELFALAGNDTLHKAITEYARQTHPIRFASLVSADYRERARQEHWQMIEALRAQDRDALVRLCAEHLQPSRDAYLNAQLQRL</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2021-06-02" version="61" xmlns="http://uniprot.org/uniprot">
    <accession>A9C107</accession>
    <name>A9C107_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Plasmid stability protein StbC</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_5842</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX38470.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012207639.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_5842"/>
    <dbReference type="EnsemblBacteria" id="ABX38470">
        <property type="protein sequence ID" value="ABX38470"/>
        <property type="gene ID" value="Daci_5842"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_5842"/>
    <dbReference type="eggNOG" id="COG4691">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_168829_4_0_4"/>
    <dbReference type="OMA" id="CIMPVIT"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006355">
        <property type="term" value="P:regulation of transcription, DNA-templated"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.1220.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013321">
        <property type="entry name" value="Arc_rbn_hlx_hlx"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010985">
        <property type="entry name" value="Ribbon_hlx_hlx"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47598">
        <property type="entry name" value="SSF47598"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="60"/>
            <end position="85"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="68"/>
            <end position="85"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX38470.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="85" mass="9404" checksum="67BDFD6FF8FD82A2" modified="2008-01-15" version="1">MANVTVRNLPDAVHRALRVRAAHHGRSTEAEIRDILEAAVRPEERVRLGSMLASIAREAGGLTDSEAEGFNRLRDRAPAEPMDFE</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="59" xmlns="http://uniprot.org/uniprot">
    <accession>A9C124</accession>
    <name>A9C124_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Transcriptional regulatory protein NfxB</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Daci_5859</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="2" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX38487.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012207656.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_5859"/>
    <dbReference type="PRIDE" id="A9C124"/>
    <dbReference type="EnsemblBacteria" id="ABX38487">
        <property type="protein sequence ID" value="ABX38487"/>
        <property type="gene ID" value="Daci_5859"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_5859"/>
    <dbReference type="eggNOG" id="COG1309">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_069356_38_3_4"/>
    <dbReference type="OMA" id="FTHMIVE"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009057">
        <property type="entry name" value="Homeobox-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036271">
        <property type="entry name" value="Tet_transcr_reg_TetR-rel_C_sf"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46689">
        <property type="entry name" value="SSF46689"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48498">
        <property type="entry name" value="SSF48498"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ABX38487.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="188" mass="20683" checksum="FCC1FF406E5F5341" modified="2008-01-15" version="1">MTSTKQEDEGKLLGALALALLDDPKANLQELARAIGISKATLYRFCPTRDQLIDRLIGHAADTLSRAMHAAELERHAPLEALRRLTTHCQDHQTLLLFLMYFWRSDISVVGQIESEWVAAMDAFFLRGQQAGVFRIDITAAAMTELWLSMAVGLLDAERRGRVARASVAAVMEQSFLHGALQPGAPAA</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="55" xmlns="http://uniprot.org/uniprot">
    <accession>A9C197</accession>
    <name>A9C197_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="1">HAD-superfamily hydrolase, subfamily IIB</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Daci_5932</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="2" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX38560.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012207729.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_5932"/>
    <dbReference type="PRIDE" id="A9C197"/>
    <dbReference type="EnsemblBacteria" id="ABX38560">
        <property type="protein sequence ID" value="ABX38560"/>
        <property type="gene ID" value="Daci_5932"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_5932"/>
    <dbReference type="eggNOG" id="COG0561">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_075026_0_0_4"/>
    <dbReference type="OMA" id="VQCHIKP"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016791">
        <property type="term" value="F:phosphatase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.1000">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036412">
        <property type="entry name" value="HAD-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006379">
        <property type="entry name" value="HAD-SF_hydro_IIB"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023214">
        <property type="entry name" value="HAD_sf"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56784">
        <property type="entry name" value="SSF56784"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01484">
        <property type="entry name" value="HAD-SF-IIB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ABX38560.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="265" mass="29182" checksum="552493A9F841C6FC" modified="2008-01-15" version="1">MPTTLQPLSLWTPPASPLGILTDIDDTLTTEGVVPDHVVDAIARLKQSGLRVVPITGRPVGWSEPFAQAWPVDAIVAENGAVALRRNAQGGLDKLYQQDEATRTANYARMQQVLAEIEATVPGALRATDSAGRECDIAVDHSEFTQMPQQDIDRCVAIMKAAGMNATVSSIHINGWFGAHNKLEGARWILRTLFDIDLDATLDRWIYIGDSTNDQLMFEHMPHSVGVANIARFVPQLKHLPRHVTRAERGDGFAEMAQYLLTQRP</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="75" xmlns="http://uniprot.org/uniprot">
    <accession>A9C199</accession>
    <name>A9C199_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="10">Pili assembly chaperone</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="10" type="ordered locus">Daci_5934</name>
    </gene>
    <organism evidence="10 11">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="10 11" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="11">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="11" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="11">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1 6">Periplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2 6">Belongs to the periplasmic pilus chaperone family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX38562.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012207731.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_5934"/>
    <dbReference type="PRIDE" id="A9C199"/>
    <dbReference type="EnsemblBacteria" id="ABX38562">
        <property type="protein sequence ID" value="ABX38562"/>
        <property type="gene ID" value="Daci_5934"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_5934"/>
    <dbReference type="eggNOG" id="COG3121">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_070768_0_2_4"/>
    <dbReference type="OMA" id="EGDLAMS"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030288">
        <property type="term" value="C:outer membrane-bounded periplasmic space"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0071555">
        <property type="term" value="P:cell wall organization"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0061077">
        <property type="term" value="P:chaperone-mediated protein folding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.40.10">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013783">
        <property type="entry name" value="Ig-like_fold"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008962">
        <property type="entry name" value="PapD-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036316">
        <property type="entry name" value="Pili_assmbl_chap_C_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001829">
        <property type="entry name" value="Pili_assmbl_chaperone_bac"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016148">
        <property type="entry name" value="Pili_assmbl_chaperone_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018046">
        <property type="entry name" value="Pili_assmbl_chaperone_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016147">
        <property type="entry name" value="Pili_assmbl_chaperone_N"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02753">
        <property type="entry name" value="PapD_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00345">
        <property type="entry name" value="PapD_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00969">
        <property type="entry name" value="CHAPERONPILI"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF49354">
        <property type="entry name" value="SSF49354"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF49584">
        <property type="entry name" value="SSF49584"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00635">
        <property type="entry name" value="PILI_CHAPERONE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5 6" id="KW-0143">Chaperone</keyword>
    <keyword evidence="4" id="KW-0574">Periplasm</keyword>
    <keyword evidence="11" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 7" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="7">
        <location>
            <begin position="1"/>
            <end position="25"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5002735298" evidence="7">
        <location>
            <begin position="26"/>
            <end position="253"/>
        </location>
    </feature>
    <feature type="domain" description="PapD_N" evidence="8">
        <location>
            <begin position="27"/>
            <end position="148"/>
        </location>
    </feature>
    <feature type="domain" description="PapD_C" evidence="9">
        <location>
            <begin position="176"/>
            <end position="240"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004418"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00007399"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022729"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022764"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023186"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="RuleBase" id="RU003918"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="Pfam" id="PF00345"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="9">
        <source>
            <dbReference type="Pfam" id="PF02753"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="EMBL" id="ABX38562.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="253" mass="26899" checksum="E41F805EA029A5D2" modified="2008-01-15" version="1">MLTIKRSYGLAAVLLSLLLGTAAQASVTLTGTRIIFPSGEKEATIQLTNEGSKPALVQAWLDKGNNQESPENIDVPFVVTPTIMRIEAGKSQTLRIIYSGEALPADKESLFWLNVLDVPPKAEMEGDSNNLQFAFRTRVKLMYRPSNLPGNAQEAPAQLQWSAGVDANNQPVLKARNPSAFVVNVAGVEVQLNGKSFEAGVGPVLPGQVATFPIKEPAGVNMAGATGATVMFSSINDWGASLNHEARIGNSAQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="78" xmlns="http://uniprot.org/uniprot">
    <accession>A9C1F3</accession>
    <name>A9C1F3_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="6">Acetyl-CoA acetyltransferase</fullName>
            <ecNumber evidence="6">2.3.1.9</ecNumber>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ordered locus">Daci_5988</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="7" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1 3">Belongs to the thiolase-like superfamily. Thiolase family.</text>
    </comment>
    <dbReference type="EC" id="2.3.1.9" evidence="6"/>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX38616.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012207785.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_5988"/>
    <dbReference type="PRIDE" id="A9C1F3"/>
    <dbReference type="EnsemblBacteria" id="ABX38616">
        <property type="protein sequence ID" value="ABX38616"/>
        <property type="gene ID" value="Daci_5988"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_5988"/>
    <dbReference type="eggNOG" id="COG0183">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_031026_0_1_4"/>
    <dbReference type="OMA" id="YEAGRSM"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003985">
        <property type="term" value="F:acetyl-CoA C-acetyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="CDD" id="cd00751">
        <property type="entry name" value="thiolase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.47.10">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002155">
        <property type="entry name" value="Thiolase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016039">
        <property type="entry name" value="Thiolase-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020610">
        <property type="entry name" value="Thiolase_AS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020617">
        <property type="entry name" value="Thiolase_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020616">
        <property type="entry name" value="Thiolase_N"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02803">
        <property type="entry name" value="Thiolase_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00108">
        <property type="entry name" value="Thiolase_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF000429">
        <property type="entry name" value="Ac-CoA_Ac_transf"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53901">
        <property type="entry name" value="SSF53901"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01930">
        <property type="entry name" value="AcCoA-C-Actrans"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00099">
        <property type="entry name" value="THIOLASE_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3 6" id="KW-0012">Acyltransferase</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 6" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Thiolase_N" evidence="4">
        <location>
            <begin position="5"/>
            <end position="263"/>
        </location>
    </feature>
    <feature type="domain" description="Thiolase_C" evidence="5">
        <location>
            <begin position="271"/>
            <end position="391"/>
        </location>
    </feature>
    <feature type="active site" description="Acyl-thioester intermediate" evidence="2">
        <location>
            <position position="89"/>
        </location>
    </feature>
    <feature type="active site" description="Proton acceptor" evidence="2">
        <location>
            <position position="349"/>
        </location>
    </feature>
    <feature type="active site" description="Proton acceptor" evidence="2">
        <location>
            <position position="379"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00010982"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="PIRSR" id="PIRSR000429-1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="RuleBase" id="RU003557"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="Pfam" id="PF00108"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="Pfam" id="PF02803"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="ABX38616.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="393" mass="40646" checksum="56A3E9EDA060FB59" modified="2008-01-15" version="1">MQDPIVIVGAARTPMGAFQGDFADLAAHDLGGAAIKAAVQRAGVAPEKVDEVLFGNCLMAGQGQAPARQAGFKGGLPRSTGAVTLSKMCGAGMEATILAHDQLVAGSRDVVVSGGMESMTNAPYLLKKGRGGYRMGHDKVYDHMMLDGLEDAYEPGRSMGTFGEDCAAKYHFTREQQDAYAIESVKRAQAATESGAFAAEITPVTVSTRKGDVTVSIDEGPAKAKLDKISSLKPAFKKDGTITAASSSSINDGAAALVLMRESTAKELGCKPLARIVAHATHAQEPEWFTTAPVGATQKALKKAGWTAADVDLWEVNEAFAVVPMALMAELGVPRDKVNVNGGACALGHPIGASGARILVTLLHALQARGGKRGLATLCIGGGEGTAMAIELV</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="56" xmlns="http://uniprot.org/uniprot">
    <accession>A9C1I1</accession>
    <name>A9C1I1_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Hpt protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Daci_6016</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="4" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX38644.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_6016"/>
    <dbReference type="PRIDE" id="A9C1I1"/>
    <dbReference type="EnsemblBacteria" id="ABX38644">
        <property type="protein sequence ID" value="ABX38644"/>
        <property type="gene ID" value="Daci_6016"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_6016"/>
    <dbReference type="eggNOG" id="COG2198">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_1376202_0_0_4"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000160">
        <property type="term" value="P:phosphorelay signal transduction system"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd00088">
        <property type="entry name" value="HPT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.120.160">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036641">
        <property type="entry name" value="HPT_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008207">
        <property type="entry name" value="Sig_transdc_His_kin_Hpt_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01627">
        <property type="entry name" value="Hpt"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47226">
        <property type="entry name" value="SSF47226"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50894">
        <property type="entry name" value="HPT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0597">Phosphoprotein</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HPt" evidence="2">
        <location>
            <begin position="1"/>
            <end position="90"/>
        </location>
    </feature>
    <feature type="modified residue" description="Phosphohistidine" evidence="1">
        <location>
            <position position="35"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00110"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS50894"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ABX38644.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="198" mass="21177" checksum="DF681695B2D6D2F2" modified="2008-01-15" version="1">MAAIRRFLNEQLDLADRLRRALQRPGTEALVGLAHRVRGAAGNLGLQAVYRLASRLEGHAQDGAPQPQLLALIDQLQQALDAVTQELRQRHPAAMPVAEVAGQALPGGTAPAPPVADAGPQGGASCLPADARPWLERIIAALQSGELDGQAMQALVRMLTAEQLQPLQQALDNFDFERAQECAQQLQQQLPSIDGDRA</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="83" xmlns="http://uniprot.org/uniprot">
    <accession>A9C1I7</accession>
    <name>A9C1I7_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="6">GntR domain protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ordered locus">Daci_6022</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="7" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX38650.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012207819.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_6022"/>
    <dbReference type="PRIDE" id="A9C1I7"/>
    <dbReference type="EnsemblBacteria" id="ABX38650">
        <property type="protein sequence ID" value="ABX38650"/>
        <property type="gene ID" value="Daci_6022"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_6022"/>
    <dbReference type="eggNOG" id="COG2186">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_017584_9_0_4"/>
    <dbReference type="OMA" id="RMKGRIQ"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003700">
        <property type="term" value="F:DNA-binding transcription factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd07377">
        <property type="entry name" value="WHTH_GntR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.120.530">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011711">
        <property type="entry name" value="GntR_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008920">
        <property type="entry name" value="TF_FadR/GntR_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000524">
        <property type="entry name" value="Tscrpt_reg_HTH_GntR"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036390">
        <property type="entry name" value="WH_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07729">
        <property type="entry name" value="FCD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00392">
        <property type="entry name" value="GntR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00035">
        <property type="entry name" value="HTHGNTR"/>
    </dbReference>
    <dbReference type="SMART" id="SM00895">
        <property type="entry name" value="FCD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00345">
        <property type="entry name" value="HTH_GNTR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46785">
        <property type="entry name" value="SSF46785"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48008">
        <property type="entry name" value="SSF48008"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50949">
        <property type="entry name" value="HTH_GNTR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0804">Transcription</keyword>
    <keyword evidence="1" id="KW-0805">Transcription regulation</keyword>
    <feature type="domain" description="HTH gntR-type" evidence="5">
        <location>
            <begin position="14"/>
            <end position="85"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="4">
        <location>
            <begin position="257"/>
            <end position="338"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023015"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023163"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="PROSITE" id="PS50949"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="ABX38650.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="338" mass="37113" checksum="BAD115BE93ECE7C2" modified="2008-01-15" version="1">MDTPKSPTLAIRQLKRPDLVAQEIKRLITEKNLSPGDRLPRESELQAQFQVSKGTIREALKSLEVQGLITISTGPSGGGTVVEVPLDRTLQFMQNYLFFQEVTIDDIYTVRQMLEPELAAGAVPHLTEADFDALEHSIACCDPTQSSEDLVSQRREDVNFHDILAAANPNPFLRFTCELINEMIRQLIVFANRTPQSEHRRFGEANARIHRDIVQAARERDAVKVHALMQQHMRDAASSVKRMKGRIQGRLILDADSLRSPRPQRAVQPVEKPAMAVPRTAPKKAPKPAAKAAPTTTARPAAKTAAKAVAKTTAKAAPKAPAKSPSARPAAARKRAAS</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="55" xmlns="http://uniprot.org/uniprot">
    <accession>A9C1J6</accession>
    <name>A9C1J6_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Guanine-specific ribonuclease N1 and T1</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ordered locus">Daci_6031</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="5" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the ribonuclease N1/T1 family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX38659.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012207828.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_6031"/>
    <dbReference type="PRIDE" id="A9C1J6"/>
    <dbReference type="EnsemblBacteria" id="ABX38659">
        <property type="protein sequence ID" value="ABX38659"/>
        <property type="gene ID" value="Daci_6031"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_6031"/>
    <dbReference type="eggNOG" id="COG4290">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_112496_2_0_4"/>
    <dbReference type="OMA" id="AANDCYY"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004521">
        <property type="term" value="F:endoribonuclease activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003723">
        <property type="term" value="F:RNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000026">
        <property type="entry name" value="Gua-sp_ribonuclease_N1/T1/U2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016191">
        <property type="entry name" value="Ribonuclease/ribotoxin"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00545">
        <property type="entry name" value="Ribonuclease"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53933">
        <property type="entry name" value="SSF53933"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="2" id="KW-0540">Nuclease</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00009006"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022722"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="ABX38659.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="139" mass="15243" checksum="478FD4711E3E2326" modified="2008-01-15" version="1">MLKAAAAKAYQSGLALIVGAAFVLSPSLADARRSAPESVETTAAMATVPLSELPREGRSTYTLILRGGPFAHDKDGTVFGNRERILPRQSRGYYREYTVRTPGSRDRGARRIVCGGEPQQPDACYYTSDHYSSFRKIIE</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="55" xmlns="http://uniprot.org/uniprot">
    <accession>A9C1L4</accession>
    <name>A9C1L4_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="7">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ordered locus">Daci_6049</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="8" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX38677.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012207846.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_6049"/>
    <dbReference type="PRIDE" id="A9C1L4"/>
    <dbReference type="EnsemblBacteria" id="ABX38677">
        <property type="protein sequence ID" value="ABX38677"/>
        <property type="gene ID" value="Daci_6049"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_6049"/>
    <dbReference type="eggNOG" id="COG3117">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_100563_2_1_4"/>
    <dbReference type="OMA" id="VAGSTFW"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005887">
        <property type="term" value="C:integral component of plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015221">
        <property type="term" value="F:lipopolysaccharide transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010664">
        <property type="entry name" value="LipoPS_assembly_LptC-rel"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR026265">
        <property type="entry name" value="LptC"/>
    </dbReference>
    <dbReference type="Pfam" id="PF06835">
        <property type="entry name" value="LptC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR04409">
        <property type="entry name" value="LptC_YrbK"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0997">Cell inner membrane</keyword>
    <keyword evidence="1" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="5 6" id="KW-0472">Membrane</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 6" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="4 6" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="12"/>
            <end position="32"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022519"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="ABX38677.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="205" mass="22951" checksum="AA871E9DBD1ABF2D" modified="2008-01-15" version="1">MIQAWRRVGDRLSLYLPVLLMGLLALGTWWLVRNAPQPVASGTEKAVAHEPDYFMKDFSIKSFDATGRLKSQIEGSVGRHYPDTDTLEIDNVRMFAVSPEGRITRGSAKRALSNADGSEVQMFGNAVVTREPFVTAGKQPQPQLQFQGEFLHAWPNEERVSSNQPVVLTRGNDRFTADSMQYSNLDLVMKLQGRVRGTLQPSRTK</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="60" xmlns="http://uniprot.org/uniprot">
    <accession>A9C1M2</accession>
    <name>A9C1M2_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Putative membrane protein insertion efficiency factor</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Daci_6057</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="4" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="1">Could be involved in insertion of integral membrane proteins into the membrane.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Cell inner membrane</location>
            <topology evidence="1">Peripheral membrane protein</topology>
            <orientation evidence="1">Cytoplasmic side</orientation>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="1">Belongs to the UPF0161 family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX38685.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012207854.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_6057"/>
    <dbReference type="PRIDE" id="A9C1M2"/>
    <dbReference type="EnsemblBacteria" id="ABX38685">
        <property type="protein sequence ID" value="ABX38685"/>
        <property type="gene ID" value="Daci_6057"/>
    </dbReference>
    <dbReference type="GeneID" id="60691185"/>
    <dbReference type="KEGG" id="dac:Daci_6057"/>
    <dbReference type="eggNOG" id="COG0759">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_144811_2_0_4"/>
    <dbReference type="OMA" id="QPTCSHY"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00386">
        <property type="entry name" value="UPF0161_YidD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002696">
        <property type="entry name" value="Membr_insert_effic_factor"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33383">
        <property type="entry name" value="PTHR33383"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01809">
        <property type="entry name" value="YidD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM01234">
        <property type="entry name" value="Haemolytic"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00278">
        <property type="entry name" value="TIGR00278"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="1" id="KW-0997">Cell inner membrane</keyword>
    <keyword evidence="1" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="65"/>
            <end position="96"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="2">
        <location>
            <begin position="79"/>
            <end position="96"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00386"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ABX38685.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="96" mass="10632" checksum="DC0637CD7E260CAE" modified="2008-01-15" version="1">MMQRLLMALVRGYRLMLSPWLGSACRFTPTCSAYSLEALEQHGAAVGSYLTLRRLARCHPWCDGGHDPVPEQKPRLFTSLTAAPENTQPSSPKKSS</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="74" xmlns="http://uniprot.org/uniprot">
    <accession>A9C1V1</accession>
    <name>A9C1V1_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="10">Peptidase M48 Ste24p</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="10" type="ordered locus">Daci_2648</name>
    </gene>
    <organism evidence="10 11">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="10 11" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="11">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="11" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="11">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="6">
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </cofactor>
        <text evidence="6">Binds 1 zinc ion per subunit.</text>
    </comment>
    <comment type="similarity">
        <text evidence="6">Belongs to the peptidase M48 family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX35286.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012204532.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="MEROPS" id="M48.A03"/>
    <dbReference type="PRIDE" id="A9C1V1"/>
    <dbReference type="EnsemblBacteria" id="ABX35286">
        <property type="protein sequence ID" value="ABX35286"/>
        <property type="gene ID" value="Daci_2648"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_2648"/>
    <dbReference type="eggNOG" id="COG0501">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_074068_0_0_4"/>
    <dbReference type="OMA" id="LNYKVYL"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004222">
        <property type="term" value="F:metalloendopeptidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006508">
        <property type="term" value="P:proteolysis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001915">
        <property type="entry name" value="Peptidase_M48"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01435">
        <property type="entry name" value="Peptidase_M48"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3 6" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="2" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="5 6" id="KW-0482">Metalloprotease</keyword>
    <keyword evidence="1 6" id="KW-0645">Protease</keyword>
    <keyword evidence="11" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="8" id="KW-0732">Signal</keyword>
    <keyword evidence="4 6" id="KW-0862">Zinc</keyword>
    <feature type="signal peptide" evidence="8">
        <location>
            <begin position="1"/>
            <end position="17"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5002736089" evidence="8">
        <location>
            <begin position="18"/>
            <end position="254"/>
        </location>
    </feature>
    <feature type="domain" description="Peptidase_M48" evidence="9">
        <location>
            <begin position="76"/>
            <end position="249"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="7">
        <location>
            <begin position="226"/>
            <end position="254"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="7">
        <location>
            <begin position="226"/>
            <end position="242"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022670"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022833"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023049"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="RuleBase" id="RU003983"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="9">
        <source>
            <dbReference type="Pfam" id="PF01435"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="EMBL" id="ABX35286.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="254" mass="26922" checksum="E856BED7699D5741" modified="2008-01-15" version="1">MKIKLLMAIVASGVVLAGCKTMESPDVGGLLDSGSTAMKAMTLTDDDVVTLSNDSCAAMDAQNKVADAKSKYTLRLNKVIAGMPQAVNGKKAVYKVYMTQDVNAWAMANGCIRVYSGLMDLMNDDELRGVIGHEIGHVALGHSKKRMQTAYAASAARSIAANSGNSALASLSRSQAGDLGEKFINAQFSQSQESAADDYSFDLLTEKKMSRQGLVTSFQKLAKLSAGSGGSSILSSHPPSEQRAQRMQDRIDGK</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="89" xmlns="http://uniprot.org/uniprot">
    <accession>A9C1Z4</accession>
    <name>A9C1Z4_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="4">tRNA pseudouridine synthase B</fullName>
            <ecNumber evidence="4">5.4.99.25</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="4">tRNA pseudouridine(55) synthase</fullName>
            <shortName evidence="4">Psi55 synthase</shortName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="4">tRNA pseudouridylate synthase</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="4">tRNA-uridine isomerase</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="4" type="primary">truB</name>
        <name evidence="8" type="ordered locus">Daci_2992</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="9" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="4">Responsible for synthesis of pseudouridine from uracil-55 in the psi GC loop of transfer RNAs.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1 4">
            <text>uridine(55) in tRNA = pseudouridine(55) in tRNA</text>
            <dbReference type="Rhea" id="RHEA:42532"/>
            <dbReference type="Rhea" id="RHEA-COMP:10101"/>
            <dbReference type="Rhea" id="RHEA-COMP:10102"/>
            <dbReference type="ChEBI" id="CHEBI:65314"/>
            <dbReference type="ChEBI" id="CHEBI:65315"/>
            <dbReference type="EC" id="5.4.99.25"/>
        </reaction>
    </comment>
    <comment type="similarity">
        <text evidence="2 4">Belongs to the pseudouridine synthase TruB family. Type 1 subfamily.</text>
    </comment>
    <dbReference type="EC" id="5.4.99.25" evidence="4"/>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX35630.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012204836.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_2992"/>
    <dbReference type="PRIDE" id="A9C1Z4"/>
    <dbReference type="EnsemblBacteria" id="ABX35630">
        <property type="protein sequence ID" value="ABX35630"/>
        <property type="gene ID" value="Daci_2992"/>
    </dbReference>
    <dbReference type="GeneID" id="60687288"/>
    <dbReference type="KEGG" id="dac:Daci_2992"/>
    <dbReference type="eggNOG" id="COG0130">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_032087_0_3_4"/>
    <dbReference type="OMA" id="ELQFIRW"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003723">
        <property type="term" value="F:RNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0106029">
        <property type="term" value="F:tRNA pseudouridine synthase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0031119">
        <property type="term" value="P:tRNA pseudouridine synthesis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd02573">
        <property type="entry name" value="PseudoU_synth_EcTruB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01080">
        <property type="entry name" value="TruB_bact"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020103">
        <property type="entry name" value="PsdUridine_synth_cat_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002501">
        <property type="entry name" value="PsdUridine_synth_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014780">
        <property type="entry name" value="tRNA_psdUridine_synth_TruB"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015240">
        <property type="entry name" value="tRNA_sdUridine_synth_fam1_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR032819">
        <property type="entry name" value="TruB_C"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR13767">
        <property type="entry name" value="PTHR13767"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF09157">
        <property type="entry name" value="TruB-C_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF16198">
        <property type="entry name" value="TruB_C_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01509">
        <property type="entry name" value="TruB_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55120">
        <property type="entry name" value="SSF55120"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00431">
        <property type="entry name" value="TruB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-0413">Isomerase</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 4" id="KW-0819">tRNA processing</keyword>
    <feature type="domain" description="TruB_N" evidence="5">
        <location>
            <begin position="35"/>
            <end position="189"/>
        </location>
    </feature>
    <feature type="domain" description="TruB_C_2" evidence="7">
        <location>
            <begin position="190"/>
            <end position="247"/>
        </location>
    </feature>
    <feature type="domain" description="TruB-C_2" evidence="6">
        <location>
            <begin position="252"/>
            <end position="306"/>
        </location>
    </feature>
    <feature type="active site" description="Nucleophile" evidence="4">
        <location>
            <position position="50"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00000385"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00005642"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022694"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01080"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="Pfam" id="PF01509"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="Pfam" id="PF09157"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="Pfam" id="PF16198"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="ABX35630.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="321" mass="34449" checksum="5945EB1C25D4D5EE" modified="2008-01-15" version="1">MNAPRTRVQRRPVHGVLLLDKPLELSSNDALQKVKWLLRAEKAGHTGTLDPLATGVLPLCFGAATKFSQLQLEAAKTYEAIARLGQTTTTADAEGEVLRERAVDLAALTAERLAAVQAQFTGAIRQVPPMYSALKKDGKALYEYARAGIEVERPAREVTIHALELSLTQDSEGLPAIRMLVTCSKGTYIRTLAEDVGEALGCGAHLRALRRIDTGGLGVERCISLEALAAMGEGERLQQLQPVDALLASHTAVTLGEQDAARFLTGLPRKGAWADAEAVAVYGENPQALLGVGRVVRGELIPGRLLSSLEIQQILEDTPRP</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="81" xmlns="http://uniprot.org/uniprot">
    <accession>A9C206</accession>
    <name>A9C206_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">SsrA-binding protein</fullName>
        </recommendedName>
        <alternativeName>
            <fullName evidence="3">Small protein B</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="3" type="primary">smpB</name>
        <name evidence="4" type="ordered locus">Daci_3004</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="5" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="3">Required for rescue of stalled ribosomes mediated by trans-translation. Binds to transfer-messenger RNA (tmRNA), required for stable association of tmRNA with ribosomes. tmRNA and SmpB together mimic tRNA shape, replacing the anticodon stem-loop with SmpB. tmRNA is encoded by the ssrA gene; the 2 termini fold to resemble tRNA(Ala) and it encodes a 'tag peptide', a short internal open reading frame. During trans-translation Ala-aminoacylated tmRNA acts like a tRNA, entering the A-site of stalled ribosomes, displacing the stalled mRNA. The ribosome then switches to translate the ORF on the tmRNA; the nascent peptide is terminated with the 'tag peptide' encoded by the tmRNA and targeted for degradation. The ribosome is freed to recommence translation, which seems to be the essential function of trans-translation.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="3">Cytoplasm</location>
        </subcellularLocation>
        <text evidence="3">The tmRNA-SmpB complex associates with stalled 70S ribosomes.</text>
    </comment>
    <comment type="similarity">
        <text evidence="3">Belongs to the SmpB family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX35642.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_3004"/>
    <dbReference type="PRIDE" id="A9C206"/>
    <dbReference type="EnsemblBacteria" id="ABX35642">
        <property type="protein sequence ID" value="ABX35642"/>
        <property type="gene ID" value="Daci_3004"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_3004"/>
    <dbReference type="eggNOG" id="COG0691">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_108953_3_0_4"/>
    <dbReference type="OMA" id="WTNHSAR"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003723">
        <property type="term" value="F:RNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0070929">
        <property type="term" value="P:trans-translation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd09294">
        <property type="entry name" value="SmpB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.280.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00023">
        <property type="entry name" value="SmpB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023620">
        <property type="entry name" value="SmpB"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000037">
        <property type="entry name" value="SsrA-bd_prot"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020081">
        <property type="entry name" value="SsrA-bd_prot_CS"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30308">
        <property type="entry name" value="PTHR30308"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01668">
        <property type="entry name" value="SmpB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF74982">
        <property type="entry name" value="SSF74982"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00086">
        <property type="entry name" value="smpB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01317">
        <property type="entry name" value="SSRP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="1 3" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 3" id="KW-0694">RNA-binding</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022490"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022884"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00023"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="ABX35642.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="173" mass="19797" checksum="7B67D27B11BDEF18" modified="2008-01-15" version="1">MYGELSSPGFRRIYYSMAKKPETQSRIADNKKAAFNYFFEERFEAGIVLHGWEVKALRSGKVQLTDGYVIVKDGELFLLGCQINPLKTASTHVNPDAARIKKLLLKKDDILRLIGKVEQKGFTLVPINLHWKNGFVKCDIALAKGKAEHDKRDVIKDREGKREVERAMKSFNR</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="32" xmlns="http://uniprot.org/uniprot">
    <accession>A9C2D6</accession>
    <name>A9C2D6_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Daci_3442</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="2" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX36080.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012205280.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_3442"/>
    <dbReference type="PRIDE" id="A9C2D6"/>
    <dbReference type="EnsemblBacteria" id="ABX36080">
        <property type="protein sequence ID" value="ABX36080"/>
        <property type="gene ID" value="Daci_3442"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_3442"/>
    <dbReference type="HOGENOM" id="CLU_1632690_0_0_4"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ABX36080.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="162" mass="17439" checksum="D83B86EB57B5F494" modified="2008-01-15" version="1">MTPLARARDIAAYLTTRLATITKANGYETDIGLHVFRGRRKIDDQQVPCAVLIEGEDKPGGVQGAGSQQVTQSYVLGGYAECDPDHPNDRAHEILADIKKALFGLTSDATRAERAGAEFSFGGRVKSVSYRGRDIGPRADGVPIVFAVVHIDVVFVEQLAQA</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="57" xmlns="http://uniprot.org/uniprot">
    <accession>A9C2Q9</accession>
    <name>A9C2Q9_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">DUF218 domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Daci_3776</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="4" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX36408.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012205602.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_3776"/>
    <dbReference type="PRIDE" id="A9C2Q9"/>
    <dbReference type="EnsemblBacteria" id="ABX36408">
        <property type="protein sequence ID" value="ABX36408"/>
        <property type="gene ID" value="Daci_3776"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_3776"/>
    <dbReference type="eggNOG" id="COG1434">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_051474_2_2_4"/>
    <dbReference type="OMA" id="FHMFRSK"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd06259">
        <property type="entry name" value="YdcF-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.620">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003848">
        <property type="entry name" value="DUF218"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014729">
        <property type="entry name" value="Rossmann-like_a/b/a_fold"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02698">
        <property type="entry name" value="DUF218"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="56"/>
            <end position="75"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="87"/>
            <end position="109"/>
        </location>
    </feature>
    <feature type="domain" description="DUF218" evidence="2">
        <location>
            <begin position="123"/>
            <end position="269"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF02698"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ABX36408.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="280" mass="30212" checksum="E4C96D5312F7355D" modified="2008-01-15" version="1">MHKLSPAPGPVPGRDAVAGLRRLGPLQWLGLITGAVLLGDAVVLMARGMFNLGVTLPAVLGLLFMACSLWRSAIARRLRASAWLRRAWWLGWAALAMWLVSLLVFWAHLLSASSGLPPDQPVQAIVVLGSATRDGQPSLTLAQRLDRAAELAARQPKALVLTSGGVDFGESESEGAIMARYLQQRHGLPPERLLMEERSTSTALNLAWSLPLLQARGVEPQAAIAIVTSDFHTLRAGWIAERSGYGQAFTVGAPTPVTIRANAWLREYFAVISGWVLGEF</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="52" xmlns="http://uniprot.org/uniprot">
    <accession>A9C2R0</accession>
    <name>A9C2R0_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Lactoylglutathione lyase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_3777</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX36409.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012205603.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_3777"/>
    <dbReference type="PRIDE" id="A9C2R0"/>
    <dbReference type="EnsemblBacteria" id="ABX36409">
        <property type="protein sequence ID" value="ABX36409"/>
        <property type="gene ID" value="Daci_3777"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_3777"/>
    <dbReference type="eggNOG" id="COG0346">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_110049_0_0_4"/>
    <dbReference type="OMA" id="LWVDMLG"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016829">
        <property type="term" value="F:lyase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.10.180.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029068">
        <property type="entry name" value="Glyas_Bleomycin-R_OHBP_Dase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037523">
        <property type="entry name" value="VOC"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54593">
        <property type="entry name" value="SSF54593"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51819">
        <property type="entry name" value="VOC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0456">Lyase</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="VOC" evidence="1">
        <location>
            <begin position="12"/>
            <end position="147"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS51819"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX36409.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="156" mass="17049" checksum="46D4FE579AFA08C0" modified="2008-01-15" version="1">MASEQRPFRVLGIQQVAIGGTDKQRMKRLWVDMLGLTQTGTFQSERENVDEDILAMGQGAHKVEVDIMQPLDIDRKPAVHTTPLNHIGLWIDDLPLAVQWLTAQGVRFAPGGIRQGAAGYDICFLHPKSNDEFPIAGEGVLIELVQAPAEVIAALG</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="64" xmlns="http://uniprot.org/uniprot">
    <accession>A9C332</accession>
    <name>A9C332_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="3">YD repeat protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Daci_4514</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="4" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX37143.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_4514"/>
    <dbReference type="PRIDE" id="A9C332"/>
    <dbReference type="EnsemblBacteria" id="ABX37143">
        <property type="protein sequence ID" value="ABX37143"/>
        <property type="gene ID" value="Daci_4514"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_4514"/>
    <dbReference type="eggNOG" id="COG1305">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="eggNOG" id="COG1372">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="eggNOG" id="COG3209">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_224475_0_0_4"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016539">
        <property type="term" value="P:intein-mediated protein splicing"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003587">
        <property type="entry name" value="Hint_dom_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036844">
        <property type="entry name" value="Hint_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006141">
        <property type="entry name" value="Intein_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008964">
        <property type="entry name" value="Invasin/intimin_cell_adhesion"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038765">
        <property type="entry name" value="Papain-like_cys_pep_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR022385">
        <property type="entry name" value="Rhs_assc_core"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR031325">
        <property type="entry name" value="RHS_repeat"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR032721">
        <property type="entry name" value="Toxin-deaminase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002931">
        <property type="entry name" value="Transglutaminase-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006530">
        <property type="entry name" value="YD"/>
    </dbReference>
    <dbReference type="Pfam" id="PF05593">
        <property type="entry name" value="RHS_repeat"/>
        <property type="match status" value="9"/>
    </dbReference>
    <dbReference type="Pfam" id="PF14424">
        <property type="entry name" value="Toxin-deaminase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01841">
        <property type="entry name" value="Transglut_core"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00306">
        <property type="entry name" value="HintN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF49373">
        <property type="entry name" value="SSF49373"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51294">
        <property type="entry name" value="SSF51294"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54001">
        <property type="entry name" value="SSF54001"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR03696">
        <property type="entry name" value="Rhs_assc_core"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01643">
        <property type="entry name" value="YD_repeat_2x"/>
        <property type="match status" value="14"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50817">
        <property type="entry name" value="INTEIN_N_TER"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HintN" evidence="2">
        <location>
            <begin position="3372"/>
            <end position="3480"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="2695"/>
            <end position="2748"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="SMART" id="SM00306"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ABX37143.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="3689" mass="388708" checksum="BE4A4E8330E998EF" modified="2008-01-15" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="54" xmlns="http://uniprot.org/uniprot">
    <accession>A9C3E4</accession>
    <name>A9C3E4_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Daci_4626</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="2" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX37255.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_4626"/>
    <dbReference type="PRIDE" id="A9C3E4"/>
    <dbReference type="EnsemblBacteria" id="ABX37255">
        <property type="protein sequence ID" value="ABX37255"/>
        <property type="gene ID" value="Daci_4626"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_4626"/>
    <dbReference type="eggNOG" id="COG3193">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_103773_1_2_4"/>
    <dbReference type="OMA" id="NNWAVTI"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.450.150">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005624">
        <property type="entry name" value="PduO/GlcC-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038084">
        <property type="entry name" value="PduO/GlcC-like_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03928">
        <property type="entry name" value="Haem_degrading"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF143744">
        <property type="entry name" value="SSF143744"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ABX37255.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="141" mass="14511" checksum="A888BC3C0ABA12C3" modified="2008-01-15" version="1">MDNWNLMKTKHELELADVKAIAAAAEAEALKNKWAVTIAIVDDGGHLLWLQRLDGAAAVSAHIASSKARSAALGRRDTKGYEDMINNGRTAFLSAPTLDGLLEGGVAIMKDGQCLGAVGVSGVKASEDAQVASAGIAALGL</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="41" xmlns="http://uniprot.org/uniprot">
    <accession>A9C3I9</accession>
    <name>A9C3I9_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Daci_4671</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="2" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX37300.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012206470.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_4671"/>
    <dbReference type="PRIDE" id="A9C3I9"/>
    <dbReference type="EnsemblBacteria" id="ABX37300">
        <property type="protein sequence ID" value="ABX37300"/>
        <property type="gene ID" value="Daci_4671"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_4671"/>
    <dbReference type="eggNOG" id="ENOG5033FG2">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_2328901_0_0_4"/>
    <dbReference type="OMA" id="YIVMMAS"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ABX37300.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="100" mass="10900" checksum="7133E9512FC6E477" modified="2008-01-15" version="1">MQDDFGNAINPHTARNINARLDEGDARMTRIEAELRANTEATEKVRVNTAEMVEFFAAAQGAFKVLNWIGKVAKPITYIVMMASAGLAFWKALTIGGGGR</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="35" xmlns="http://uniprot.org/uniprot">
    <accession>A9C3L5</accession>
    <name>A9C3L5_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Daci_4697</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="2" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX37326.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012206496.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="PRIDE" id="A9C3L5"/>
    <dbReference type="EnsemblBacteria" id="ABX37326">
        <property type="protein sequence ID" value="ABX37326"/>
        <property type="gene ID" value="Daci_4697"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_4697"/>
    <dbReference type="HOGENOM" id="CLU_1892789_0_0_4"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ABX37326.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="134" mass="14554" checksum="282E1DC0378A8720" modified="2008-01-15" version="1">MLYGERLLQAMQKRSEALGREIERKDVAAAAGRSVQNIGMILTNAKGRDQKLRTEAHEKVAAYLKVNSRWLLTGEGQMDQPPAINAPTELSPAAVELAVLFDMISQSDKLSRAKAFNAASTAIMQVLQDAAAKS</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="68" xmlns="http://uniprot.org/uniprot">
    <accession>A9BLH3</accession>
    <name>A9BLH3_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Response regulator receiver protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Daci_3827</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="4" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX36458.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012205652.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_3827"/>
    <dbReference type="PRIDE" id="A9BLH3"/>
    <dbReference type="EnsemblBacteria" id="ABX36458">
        <property type="protein sequence ID" value="ABX36458"/>
        <property type="gene ID" value="Daci_3827"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_3827"/>
    <dbReference type="eggNOG" id="COG0784">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_000445_69_8_4"/>
    <dbReference type="OMA" id="YVEDNCE"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000160">
        <property type="term" value="P:phosphorelay signal transduction system"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011006">
        <property type="entry name" value="CheY-like_superfamily"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001789">
        <property type="entry name" value="Sig_transdc_resp-reg_receiver"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00072">
        <property type="entry name" value="Response_reg"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00448">
        <property type="entry name" value="REC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52172">
        <property type="entry name" value="SSF52172"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50110">
        <property type="entry name" value="RESPONSE_REGULATORY"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0597">Phosphoprotein</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Response regulatory" evidence="2">
        <location>
            <begin position="2"/>
            <end position="114"/>
        </location>
    </feature>
    <feature type="modified residue" description="4-aspartylphosphate" evidence="1">
        <location>
            <position position="51"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00169"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS50110"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ABX36458.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="122" mass="13429" checksum="8CD8A4D3D479615F" modified="2008-01-15" version="1">MRILYVEDNADLRETIGLLMESESRFVTSCATAEQALELDAAQPFDVVVSDVSLPGLSGTDLARQLLEADAQRWIILCSGYDLGPYPTAWGPHVRTLLKPFEIEDLETLLDSIQEALGNPAH</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="56" xmlns="http://uniprot.org/uniprot">
    <accession>A9BM41</accession>
    <name>A9BM41_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Taurine catabolism dioxygenase TauD/TfdA</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Daci_4757</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="4" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX37386.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012206556.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_4757"/>
    <dbReference type="PRIDE" id="A9BM41"/>
    <dbReference type="EnsemblBacteria" id="ABX37386">
        <property type="protein sequence ID" value="ABX37386"/>
        <property type="gene ID" value="Daci_4757"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_4757"/>
    <dbReference type="eggNOG" id="COG2175">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_044153_0_0_4"/>
    <dbReference type="OMA" id="HNEQAYT"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051213">
        <property type="term" value="F:dioxygenase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.60.130.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR042098">
        <property type="entry name" value="TauD-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003819">
        <property type="entry name" value="TauD/TfdA-like"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02668">
        <property type="entry name" value="TauD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-0223">Dioxygenase</keyword>
    <keyword evidence="1" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="TauD" evidence="2">
        <location>
            <begin position="28"/>
            <end position="318"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023002"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF02668"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ABX37386.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="329" mass="37247" checksum="58C742A4178A39B7" modified="2008-01-15" version="1">MNETLQRFERKAPAGSLLPQLVTPAQPGQDLLAALPPLRRDIDEALLTTGGVLLRGFGVPDVETFQRFASAFGHPLLKYEFASTPRSAVEASSGAGVYTSTEYPAHQSIPLHNEQAYTREWPMKIWFHCVTASPEGGETPIADSRAVYRRIPARIRELFEPGILYVRNFGEMDVPWQKVFNTESRAEVEAFCRHARMDWEWKEDDGLRTRQLCQAMESHPVTGEMVWFNQAHLFHISAREPEEREVLEEVYGIENLPRNTFFADGSTIGDDIFAEVRAALDAETVSFPWEQGDVLMLDNMLVAHARSPFKGPRKVIVAMAEPRSNLDRF</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2021-06-02" version="48" xmlns="http://uniprot.org/uniprot">
    <accession>A9BM63</accession>
    <name>A9BM63_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">SPW repeat-containing protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_4779</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX37408.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012206578.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_4779"/>
    <dbReference type="EnsemblBacteria" id="ABX37408">
        <property type="protein sequence ID" value="ABX37408"/>
        <property type="gene ID" value="Daci_4779"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_4779"/>
    <dbReference type="eggNOG" id="ENOG5032UF9">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_124842_3_1_4"/>
    <dbReference type="OMA" id="WEEWTEG"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005530">
        <property type="entry name" value="SPW"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03779">
        <property type="entry name" value="SPW"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="37"/>
            <end position="54"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="66"/>
            <end position="84"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="90"/>
            <end position="106"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX37408.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="121" mass="13429" checksum="754203294CC5629C" modified="2008-01-15" version="1">MKYMKHWQDPINVLLGAWLAVSPWVLGFQDQMAPTANGVVIGLALIAAALGAIFMPRAWEEWTEGLLGLWMVISPWVLGFAGQMDAMRNAVVSGVVVMVLALWVLMTDKDYMSWRSSHSAH</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="52" xmlns="http://uniprot.org/uniprot">
    <accession>A9BMC7</accession>
    <name>A9BMC7_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_4843</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX37472.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012206642.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_4843"/>
    <dbReference type="PRIDE" id="A9BMC7"/>
    <dbReference type="EnsemblBacteria" id="ABX37472">
        <property type="protein sequence ID" value="ABX37472"/>
        <property type="gene ID" value="Daci_4843"/>
    </dbReference>
    <dbReference type="GeneID" id="60689184"/>
    <dbReference type="KEGG" id="dac:Daci_4843"/>
    <dbReference type="eggNOG" id="COG2354">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_059391_0_0_4"/>
    <dbReference type="OMA" id="LWAITKG"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008526">
        <property type="entry name" value="YedI"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30503">
        <property type="entry name" value="PTHR30503"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="Pfam" id="PF05661">
        <property type="entry name" value="DUF808"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF016660">
        <property type="entry name" value="YedI"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="89"/>
            <end position="118"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="169"/>
            <end position="188"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="194"/>
            <end position="216"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="249"/>
            <end position="270"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="290"/>
            <end position="316"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX37472.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="325" mass="33314" checksum="C3FD84D676DA43A9" modified="2008-01-15" version="1">MAGAGLLMLLDDIAAILDDVALMTKVAARKSVAMADDVSVMTKVAAQKTAGVLGDDLALNAQQVTGVRAEREIPVVWAVAKGSLINKAILVPAALLISAFIPWAVTPLLMVGGAFLCFEGCEKLAHKFLHSPEEDAVERERLTQANADAGVDLVAMEKDKIKGAVRTDFILSAEIIAITLGTVASAPFGQQVAVLAGIALIMTVGVYGLVAGIVKLDDLGLWLGQRASAAARALGRGIVAAAPWLMKGLSVAGTAAMFLVGGGILVHGVPALHHAVEGLGEAVAQGALGGLWRVLAVNVLNAVAGIVAGAIVLAAVEGIKRLRRR</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="51" xmlns="http://uniprot.org/uniprot">
    <accession>A9BMF4</accession>
    <name>A9BMF4_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Putative transmembrane protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_4870</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX37499.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012206669.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_4870"/>
    <dbReference type="PRIDE" id="A9BMF4"/>
    <dbReference type="EnsemblBacteria" id="ABX37499">
        <property type="protein sequence ID" value="ABX37499"/>
        <property type="gene ID" value="Daci_4870"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_4870"/>
    <dbReference type="eggNOG" id="ENOG5032YRY">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_938842_0_0_4"/>
    <dbReference type="OMA" id="ARENYQV"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR021455">
        <property type="entry name" value="DUF3106"/>
    </dbReference>
    <dbReference type="Pfam" id="PF11304">
        <property type="entry name" value="DUF3106"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0812">Transmembrane</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="203"/>
            <end position="283"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Pro residues" evidence="1">
        <location>
            <begin position="203"/>
            <end position="230"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX37499.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="283" mass="30469" checksum="DBC4D0490B1BA384" modified="2008-01-15" version="1">MPTDSRAAFHRSAAAILAAVLLMALAWTGWRVVQQVRLAPSTVSPATIAASKTLHGDAATRQRATDLASGPRWAELTPAQSSVLEPLSERWSMMDALQKRRWMALAEGWDKLSEKEQEKLRDRMQTWSSLSAQQRSQARLNFALTNRLATDKRAQWEAYQALSDEEKRLLAARAAPKAKGAATAIEPVAPKRLARIPAASVAPATIPNPPKIPPATIYNPPPPVPPASSPAAVETHPVRPPALVETAPVEVPSATPMPLPPMELHDSPDAASQPSHGEAPLSH</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="68" xmlns="http://uniprot.org/uniprot">
    <accession>A9BMJ3</accession>
    <name>A9BMJ3_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="4">50S ribosomal protein L31</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="5" type="ordered locus">Daci_4909</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="6" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="subunit">
        <text evidence="1">Part of the 50S ribosomal subunit.</text>
    </comment>
    <comment type="similarity">
        <text evidence="4">Belongs to the bacterial ribosomal protein bL31 family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX37538.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012206708.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_4909"/>
    <dbReference type="PRIDE" id="A9BMJ3"/>
    <dbReference type="EnsemblBacteria" id="ABX37538">
        <property type="protein sequence ID" value="ABX37538"/>
        <property type="gene ID" value="Daci_4909"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_4909"/>
    <dbReference type="eggNOG" id="COG0254">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_114306_2_2_4"/>
    <dbReference type="OMA" id="MQQDKHP"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005840">
        <property type="term" value="C:ribosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003735">
        <property type="term" value="F:structural constituent of ribosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006412">
        <property type="term" value="P:translation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="4.10.830.30">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR034704">
        <property type="entry name" value="L28p-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002150">
        <property type="entry name" value="Ribosomal_L31"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR042105">
        <property type="entry name" value="Ribosomal_L31_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33280">
        <property type="entry name" value="PTHR33280"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01197">
        <property type="entry name" value="Ribosomal_L31"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR01249">
        <property type="entry name" value="RIBOSOMALL31"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF143800">
        <property type="entry name" value="SSF143800"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00105">
        <property type="entry name" value="L31"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01143">
        <property type="entry name" value="RIBOSOMAL_L31"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 4" id="KW-0687">Ribonucleoprotein</keyword>
    <keyword evidence="2 4 5" id="KW-0689">Ribosomal protein</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00011838"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022980"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023274"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="RuleBase" id="RU000564"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="ABX37538.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="81" mass="9432" checksum="136C96389A969798" modified="2008-01-15" version="1">MKEGIHPNYREVLFVDLSNGFKFVTRSCVNTKETETFEGKDYPLFKLDTSSESHPFYTGTQKSVDNMGGRVERFRNRFGKK</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="81" xmlns="http://uniprot.org/uniprot">
    <accession>A9BMW3</accession>
    <name>A9BMW3_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="5">5'-nucleotidase SurE</fullName>
            <ecNumber evidence="5">3.1.3.5</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="5">Nucleoside 5'-monophosphate phosphohydrolase</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="5" type="primary">surE</name>
        <name evidence="7" type="ordered locus">Daci_5029</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="8" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="5">Nucleotidase that shows phosphatase activity on nucleoside 5'-monophosphates.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1 5">
            <text>a ribonucleoside 5'-phosphate + H2O = a ribonucleoside + phosphate</text>
            <dbReference type="Rhea" id="RHEA:12484"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:18254"/>
            <dbReference type="ChEBI" id="CHEBI:43474"/>
            <dbReference type="ChEBI" id="CHEBI:58043"/>
            <dbReference type="EC" id="3.1.3.5"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="5">
            <name>a divalent metal cation</name>
            <dbReference type="ChEBI" id="CHEBI:60240"/>
        </cofactor>
        <text evidence="5">Binds 1 divalent metal cation per subunit.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="5">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2 5">Belongs to the SurE nucleotidase family.</text>
    </comment>
    <dbReference type="EC" id="3.1.3.5" evidence="5"/>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX37658.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_5029"/>
    <dbReference type="PRIDE" id="A9BMW3"/>
    <dbReference type="EnsemblBacteria" id="ABX37658">
        <property type="protein sequence ID" value="ABX37658"/>
        <property type="gene ID" value="Daci_5029"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_5029"/>
    <dbReference type="eggNOG" id="COG0496">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_045192_1_2_4"/>
    <dbReference type="OMA" id="DCVHIAL"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000166">
        <property type="term" value="F:nucleotide binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0106411">
        <property type="term" value="F:XMP 5'-nucleosidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.1210.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00060">
        <property type="entry name" value="SurE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR030048">
        <property type="entry name" value="SurE"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002828">
        <property type="entry name" value="SurE-like_Pase/nucleotidase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036523">
        <property type="entry name" value="SurE-like_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30457">
        <property type="entry name" value="PTHR30457"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01975">
        <property type="entry name" value="SurE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF64167">
        <property type="entry name" value="SSF64167"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00087">
        <property type="entry name" value="surE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="4 5 7" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="3 5" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="5" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="SurE" evidence="6">
        <location>
            <begin position="31"/>
            <end position="212"/>
        </location>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <position position="36"/>
        </location>
        <ligand>
            <name>a divalent metal cation</name>
            <dbReference type="ChEBI" id="CHEBI:60240"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <position position="37"/>
        </location>
        <ligand>
            <name>a divalent metal cation</name>
            <dbReference type="ChEBI" id="CHEBI:60240"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <position position="67"/>
        </location>
        <ligand>
            <name>a divalent metal cation</name>
            <dbReference type="ChEBI" id="CHEBI:60240"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <position position="119"/>
        </location>
        <ligand>
            <name>a divalent metal cation</name>
            <dbReference type="ChEBI" id="CHEBI:60240"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00000815"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00011062"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00060"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="Pfam" id="PF01975"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="ABX37658.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="289" mass="30898" checksum="D70915010FF69EE9" modified="2008-01-15" version="1">MIGVWWECLLSLGRRDARLQSPAIPAVSMKILICNDDGYQAPGIQALYEALRTVADVEVVAPEHNNSAKSNALTLNAPLYVHQAHNGFRYVNGTPADCVHIALTGLLGYRPDLVVSGINNGANMGDDTIYSGTVGAAMEGFLFGIPSIAFSQVDKGWSEIEAAAAAARQLVMDMQSQELIGLSPWLLNVNIPNMPLSALKPLKLCRLGRRHAAERVITQESPRGEMMYWIGSAGAAKDDSEGTDFHATAHGHVSVTPLKVDLTDHDNLGYWAQTAARLASAGQGGAVQP</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="51" xmlns="http://uniprot.org/uniprot">
    <accession>A9BMY9</accession>
    <name>A9BMY9_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_5055</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX37684.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012206854.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_5055"/>
    <dbReference type="PRIDE" id="A9BMY9"/>
    <dbReference type="EnsemblBacteria" id="ABX37684">
        <property type="protein sequence ID" value="ABX37684"/>
        <property type="gene ID" value="Daci_5055"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_5055"/>
    <dbReference type="eggNOG" id="COG5266">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_079897_0_0_4"/>
    <dbReference type="OMA" id="PEAGMYW"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019613">
        <property type="entry name" value="DUF4198"/>
    </dbReference>
    <dbReference type="Pfam" id="PF10670">
        <property type="entry name" value="DUF4198"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="1">
        <location>
            <begin position="1"/>
            <end position="27"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5002734904" evidence="1">
        <location>
            <begin position="28"/>
            <end position="272"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX37684.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="272" mass="29377" checksum="0A6A56FCDC96278F" modified="2008-01-15" version="1">MKSKTRFAVRLAASLAIACGAFQAAQAHNLWLLPSTTVLSKAEWITVDAAVSNDLFFFNHVPLGLDNLVVSAPDGSAVAPQNAHRGKLRSVFDLDLQQSGTYRLAIVNDGLFASWKDKATGQNRRWRGSPEKFAADVPADAQDLKVTQSVGRIETFVTVGKPSAVKPSGKGLELVPVTHPNDLVKGEKATFAFHVDGKPAANLEVVLVPGATRYRDNKGEIKATTDAKGEFSVTWPTAGMYWVDADAQDSKTSLPQAKERRLSYVGTFEVLP</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="97" xmlns="http://uniprot.org/uniprot">
    <accession>A9BN51</accession>
    <name>A9BN51_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="3 11">Tyrosine recombinase XerD</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="11" type="primary">xerD</name>
        <name evidence="15" type="ordered locus">Daci_5117</name>
    </gene>
    <organism evidence="15 16">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="15 16" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="16">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="16" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="16">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="11">Site-specific tyrosine recombinase, which acts by catalyzing the cutting and rejoining of the recombining DNA molecules. The XerC-XerD complex is essential to convert dimers of the bacterial chromosome into monomers to permit their segregation at cell division. It also contributes to the segregational stability of plasmids.</text>
    </comment>
    <comment type="subunit">
        <text evidence="11">Forms a cyclic heterotetrameric complex composed of two molecules of XerC and two molecules of XerD.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1 11">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2 11">Belongs to the 'phage' integrase family. XerD subfamily.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX37746.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012206916.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_5117"/>
    <dbReference type="PRIDE" id="A9BN51"/>
    <dbReference type="EnsemblBacteria" id="ABX37746">
        <property type="protein sequence ID" value="ABX37746"/>
        <property type="gene ID" value="Daci_5117"/>
    </dbReference>
    <dbReference type="GeneID" id="60689466"/>
    <dbReference type="KEGG" id="dac:Daci_5117"/>
    <dbReference type="eggNOG" id="COG4974">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_027562_9_0_4"/>
    <dbReference type="OMA" id="QAFWYLI"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009037">
        <property type="term" value="F:tyrosine-based site-specific recombinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0007049">
        <property type="term" value="P:cell cycle"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051301">
        <property type="term" value="P:cell division"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0007059">
        <property type="term" value="P:chromosome segregation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006313">
        <property type="term" value="P:transposition, DNA-mediated"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.150.130">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.443.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01808">
        <property type="entry name" value="Recomb_XerC_XerD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01807">
        <property type="entry name" value="Recomb_XerD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR044068">
        <property type="entry name" value="CB"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011010">
        <property type="entry name" value="DNA_brk_join_enz"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013762">
        <property type="entry name" value="Integrase-like_cat_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002104">
        <property type="entry name" value="Integrase_catalytic"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010998">
        <property type="entry name" value="Integrase_recombinase_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004107">
        <property type="entry name" value="Integrase_SAM-like_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011932">
        <property type="entry name" value="Recomb_XerD"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023009">
        <property type="entry name" value="Tyrosine_recombinase_XerC/XerD"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02899">
        <property type="entry name" value="Phage_int_SAM_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00589">
        <property type="entry name" value="Phage_integrase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56349">
        <property type="entry name" value="SSF56349"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR02225">
        <property type="entry name" value="recomb_XerD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51900">
        <property type="entry name" value="CB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51898">
        <property type="entry name" value="TYR_RECOMBINASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="10 11" id="KW-0131">Cell cycle</keyword>
    <keyword evidence="5 11" id="KW-0132">Cell division</keyword>
    <keyword evidence="6 11" id="KW-0159">Chromosome partition</keyword>
    <keyword evidence="4 11" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="7 11" id="KW-0229">DNA integration</keyword>
    <keyword evidence="9 11" id="KW-0233">DNA recombination</keyword>
    <keyword evidence="8 11 12" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="16" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Core-binding (CB)" evidence="14">
        <location>
            <begin position="31"/>
            <end position="117"/>
        </location>
    </feature>
    <feature type="domain" description="Tyr recombinase" evidence="13">
        <location>
            <begin position="138"/>
            <end position="321"/>
        </location>
    </feature>
    <feature type="active site" evidence="11">
        <location>
            <position position="178"/>
        </location>
    </feature>
    <feature type="active site" evidence="11">
        <location>
            <position position="202"/>
        </location>
    </feature>
    <feature type="active site" evidence="11">
        <location>
            <position position="273"/>
        </location>
    </feature>
    <feature type="active site" evidence="11">
        <location>
            <position position="276"/>
        </location>
    </feature>
    <feature type="active site" evidence="11">
        <location>
            <position position="299"/>
        </location>
    </feature>
    <feature type="active site" description="O-(3'-phospho-DNA)-tyrosine intermediate" evidence="11">
        <location>
            <position position="308"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004496"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00010450"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00015810"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022490"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022618"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022829"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022908"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00023172"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00023306"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01807"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="12">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU01248"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="13">
        <source>
            <dbReference type="PROSITE" id="PS51898"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="14">
        <source>
            <dbReference type="PROSITE" id="PS51900"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="15">
        <source>
            <dbReference type="EMBL" id="ABX37746.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="16">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="327" mass="36048" checksum="FECA7D0AEAD9EBE9" modified="2008-01-15" version="1">MSQVPVASIASPSAAEAESAADPASWPAPLPASLDALDLFMDALLLEDGLSRNTLAAYRRDLTAWGRWLAHQQPPLALDAAGELELQGYFAVRVEQTKASSSNRRLTVLRRYYHWALREQRIAADPTARMLAARQPPRVPHTLTQAQVEALLRAPDVDTPLGLRDRAMLELMYASGLRVSELVDLPLHGIDLRSGVLRVTGKGQKERLVPFGQEAHWWLERYLATARGAILGGQRSDAVFVTQRGAAMSRVMFWVIVKRCAQVAGVTAPLSPHTLRHAFATHLLNHGADLRVVQMLLGHADISTTTIYTHVARERLKALHALHHPRG</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="68" xmlns="http://uniprot.org/uniprot">
    <accession>A9BN89</accession>
    <name>A9BN89_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="9">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="9" type="ordered locus">Daci_5155</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="9 10" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="10" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the ABC-4 integral membrane protein family. LolC/E subfamily.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX37784.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012206954.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_5155"/>
    <dbReference type="PRIDE" id="A9BN89"/>
    <dbReference type="EnsemblBacteria" id="ABX37784">
        <property type="protein sequence ID" value="ABX37784"/>
        <property type="gene ID" value="Daci_5155"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_5155"/>
    <dbReference type="eggNOG" id="COG0577">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_012341_0_0_4"/>
    <dbReference type="OMA" id="PQSFHWT"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003838">
        <property type="entry name" value="ABC3_permease_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02687">
        <property type="entry name" value="FtsX"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="6 7" id="KW-0472">Membrane</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4 7" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="5 7" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="21"/>
            <end position="40"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="260"/>
            <end position="281"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="302"/>
            <end position="330"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="350"/>
            <end position="375"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="405"/>
            <end position="422"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="428"/>
            <end position="447"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="480"/>
            <end position="502"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="726"/>
            <end position="749"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="769"/>
            <end position="800"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="820"/>
            <end position="839"/>
        </location>
    </feature>
    <feature type="domain" description="FtsX" evidence="8">
        <location>
            <begin position="287"/>
            <end position="382"/>
        </location>
    </feature>
    <feature type="domain" description="FtsX" evidence="8">
        <location>
            <begin position="752"/>
            <end position="841"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00005236"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="Pfam" id="PF02687"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="ABX37784.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="855" mass="89795" checksum="861F2BE40B6715F3" modified="2008-01-15" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="44" xmlns="http://uniprot.org/uniprot">
    <accession>A9BNE5</accession>
    <name>A9BNE5_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Daci_5211</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="2" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX37840.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012207010.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_5211"/>
    <dbReference type="PRIDE" id="A9BNE5"/>
    <dbReference type="EnsemblBacteria" id="ABX37840">
        <property type="protein sequence ID" value="ABX37840"/>
        <property type="gene ID" value="Daci_5211"/>
    </dbReference>
    <dbReference type="GeneID" id="60689556"/>
    <dbReference type="KEGG" id="dac:Daci_5211"/>
    <dbReference type="eggNOG" id="ENOG50331K0">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_2520002_0_0_4"/>
    <dbReference type="OMA" id="PYALIVM"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ABX37840.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="84" mass="9742" checksum="3B89FD418B95C0CD" modified="2008-01-15" version="1">MATLTITTPEYTLYPSPRNEQRVVYEHQLFVSHPYTIIHLPDYNFRGKATLFAAHRLADGKMGQLVSCELAEDLARFERLFEPD</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="63" xmlns="http://uniprot.org/uniprot">
    <accession>A9BNV3</accession>
    <name>A9BNV3_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="10">Fatty acid desaturase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="10" type="ordered locus">Daci_5369</name>
    </gene>
    <organism evidence="10 11">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="10 11" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="11">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="11" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="11">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX37998.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012207167.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_5369"/>
    <dbReference type="PRIDE" id="A9BNV3"/>
    <dbReference type="EnsemblBacteria" id="ABX37998">
        <property type="protein sequence ID" value="ABX37998"/>
        <property type="gene ID" value="Daci_5369"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_5369"/>
    <dbReference type="eggNOG" id="COG1398">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_062181_0_0_4"/>
    <dbReference type="OMA" id="AQNTREW"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016717">
        <property type="term" value="F:oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006629">
        <property type="term" value="P:lipid metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd03505">
        <property type="entry name" value="Delta9-FADS-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015876">
        <property type="entry name" value="Acyl-CoA_DS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005804">
        <property type="entry name" value="FA_desaturase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002560">
        <property type="entry name" value="Transposase_DDE"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11351">
        <property type="entry name" value="PTHR11351"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01610">
        <property type="entry name" value="DDE_Tnp_ISL3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00487">
        <property type="entry name" value="FA_desaturase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="5" id="KW-0408">Iron</keyword>
    <keyword evidence="6 7" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="11" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 7" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="3 7" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="25"/>
            <end position="47"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="149"/>
            <end position="172"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="178"/>
            <end position="195"/>
        </location>
    </feature>
    <feature type="domain" description="FA_desaturase" evidence="8">
        <location>
            <begin position="25"/>
            <end position="242"/>
        </location>
    </feature>
    <feature type="domain" description="DDE_Tnp_ISL3" evidence="9">
        <location>
            <begin position="297"/>
            <end position="403"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023002"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023004"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="Pfam" id="PF00487"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="9">
        <source>
            <dbReference type="Pfam" id="PF01610"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="EMBL" id="ABX37998.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="407" mass="46449" checksum="3AFA4177C32A6E6C" modified="2008-01-15" version="1">MSLDFGSVWNLAVDWMAHGLWQLSWWQLLLYALVTTHITIAGVTIFLHRCQAHRSLDLGPVPSHFFRFWLWLGTGMVTREWVAIHRKHHAKCETEDDPHSPQTRGLDTVMRQGAELYREEAANAETLRKFGHGTPDDWIERHLYSRHSIWGPSLMLIIDVLLFGAIGLTIWAVQMAWIPFWAAGVVNGLGHFWGYRNFEAQDASTNLVPWGLIIGGEELHNNHHTYPTSAKFSVKRYEFDMGWVYISAMQKLGWAKVKKTAPRLVMGAVKPVADEKTLEAVIANRYEVMARYARGVRAAVQIELDALKQRKARQADLSLLRTARRWLHRDADKVPAQAQGQLAQARAAHPVLDQMLVMREELRQLWLNTSLSREQLTAHLQAWCHRAEASGIAALKEFSVKLRAAHA</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="67" xmlns="http://uniprot.org/uniprot">
    <accession>A9BP26</accession>
    <name>A9BP26_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Amidase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Daci_5442</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="4" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX38071.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012207240.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_5442"/>
    <dbReference type="PRIDE" id="A9BP26"/>
    <dbReference type="EnsemblBacteria" id="ABX38071">
        <property type="protein sequence ID" value="ABX38071"/>
        <property type="gene ID" value="Daci_5442"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_5442"/>
    <dbReference type="eggNOG" id="COG0154">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_009600_0_4_4"/>
    <dbReference type="OMA" id="RIPAFNC"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003824">
        <property type="term" value="F:catalytic activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.1300.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000120">
        <property type="entry name" value="Amidase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023631">
        <property type="entry name" value="Amidase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036928">
        <property type="entry name" value="AS_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11895">
        <property type="entry name" value="PTHR11895"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01425">
        <property type="entry name" value="Amidase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF75304">
        <property type="entry name" value="SSF75304"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Amidase" evidence="2">
        <location>
            <begin position="29"/>
            <end position="447"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="458"/>
            <end position="493"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF01425"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ABX38071.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="493" mass="52323" checksum="4E8DEEAE846FDA72" modified="2008-01-15" version="1">MTGTTQALHDLPAHALLRAYRERSLSPVEVMHELLAHVQRWEPALGATYLLRPEAALAQARASEARWLRGEPAGLLDGVPATVKDNIATRGDPTPVGTAATPQVAAPLDAPPAARLREAGAILFAKTTMPDYGMLSSGLSSLHGNTFNPWDPDKTPGGSSAGAGAAAAAGYGPLHVGTDIGGSIRLPAGWCGIFGLKPSLGRVPIDPPYTGRCAGPMTRSVADAALMMQALSLPDARDSMGLPHQDIAWSGFDMDPAQVRGLRIGLLLDAGCGLPLQPRVRAVVEQAAAWLETAGAHIEIIQPWLTRDMLDGLDHFWRMRSHVEMQSLPDAQRRVVLPFIRDWADSAGSITATQLFVASQQSHLLRVATVRATAAFDYVLSPVAPITAFPAHLPSPTNDPLRPLEHIAFTVPYNMSEQPAASVPCGHDGQLPIGVQIAGRRFDDLGVLRLSRVLEQLRPPQPAWPQPLPPGQGTGDSEDGAQARARAVPATPA</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="42" xmlns="http://uniprot.org/uniprot">
    <accession>A9BP31</accession>
    <name>A9BP31_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Daci_5447</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="2" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX38076.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_5447"/>
    <dbReference type="PRIDE" id="A9BP31"/>
    <dbReference type="EnsemblBacteria" id="ABX38076">
        <property type="protein sequence ID" value="ABX38076"/>
        <property type="gene ID" value="Daci_5447"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_5447"/>
    <dbReference type="eggNOG" id="ENOG502Z90B">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_061756_0_0_4"/>
    <dbReference type="OMA" id="VAYMLHA"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007362">
        <property type="entry name" value="DUF429"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04250">
        <property type="entry name" value="DUF429"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ABX38076.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="290" mass="31239" checksum="333FF95A6CAB8BD1" modified="2008-01-15" version="1">MAAMRVLGCDFSSRPTARKPITMALGRLLAGDTVVLQELLEFASLDAWAAWLARPADAAQSAQSAWVGGFDLPFGLPRELVEQLGWPTDWAACMDHYAGLTRQSLREQFKAFCAARPAGGKFAHRATDGPAGASPSMKWVNPPVAYMLHAGLPLLRAAGVHLPGLQRPGEGDARRVALEAYPGMLARAVIGRRSYKSDEPARQTPERHQARVQLLAALESGDNPLALRLRIDAEEARNQLLADGSGDRLDAVICMLQAAWAAARHAQGDALYGLPHDLDPLEGWIVTAQA</sequence>
</entry>
<entry dataset="Swiss-Prot" created="2009-04-14" modified="2022-08-03" version="81" xmlns="http://uniprot.org/uniprot">
    <accession>A9BP42</accession>
    <name>UBIB_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Probable protein kinase UbiB</fullName>
            <ecNumber evidence="1">2.7.-.-</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="1">Ubiquinone biosynthesis protein UbiB</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="1" type="primary">ubiB</name>
        <name type="ordered locus">Daci_5458</name>
    </gene>
    <organism>
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference key="1">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain>DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="1">Is probably a protein kinase regulator of UbiI activity which is involved in aerobic coenzyme Q (ubiquinone) biosynthesis.</text>
    </comment>
    <comment type="pathway">
        <text>Cofactor biosynthesis; ubiquinone biosynthesis [regulation].</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Cell inner membrane</location>
            <topology evidence="1">Single-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="1">Belongs to the ABC1 family. UbiB subfamily.</text>
    </comment>
    <dbReference type="EC" id="2.7.-.-" evidence="1"/>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX38087.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012207256.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A9BP42"/>
    <dbReference type="SMR" id="A9BP42"/>
    <dbReference type="STRING" id="398578.Daci_5458"/>
    <dbReference type="PRIDE" id="A9BP42"/>
    <dbReference type="EnsemblBacteria" id="ABX38087">
        <property type="protein sequence ID" value="ABX38087"/>
        <property type="gene ID" value="Daci_5458"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_5458"/>
    <dbReference type="eggNOG" id="COG0661">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_006533_0_0_4"/>
    <dbReference type="OMA" id="RRDYKRV"/>
    <dbReference type="UniPathway" id="UPA00232"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004672">
        <property type="term" value="F:protein kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016310">
        <property type="term" value="P:phosphorylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0010795">
        <property type="term" value="P:regulation of ubiquinone biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006744">
        <property type="term" value="P:ubiquinone biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniPathway"/>
    </dbReference>
    <dbReference type="CDD" id="cd13972">
        <property type="entry name" value="UbiB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00414">
        <property type="entry name" value="UbiB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004147">
        <property type="entry name" value="ABC1_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011009">
        <property type="entry name" value="Kinase-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010232">
        <property type="entry name" value="UbiB"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045308">
        <property type="entry name" value="UbiB_bact"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03109">
        <property type="entry name" value="ABC1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56112">
        <property type="entry name" value="SSF56112"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01982">
        <property type="entry name" value="UbiB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword id="KW-0067">ATP-binding</keyword>
    <keyword id="KW-0997">Cell inner membrane</keyword>
    <keyword id="KW-1003">Cell membrane</keyword>
    <keyword id="KW-0418">Kinase</keyword>
    <keyword id="KW-0472">Membrane</keyword>
    <keyword id="KW-0547">Nucleotide-binding</keyword>
    <keyword id="KW-1185">Reference proteome</keyword>
    <keyword id="KW-0808">Transferase</keyword>
    <keyword id="KW-0812">Transmembrane</keyword>
    <keyword id="KW-1133">Transmembrane helix</keyword>
    <keyword id="KW-0831">Ubiquinone biosynthesis</keyword>
    <feature type="chain" id="PRO_1000123901" description="Probable protein kinase UbiB">
        <location>
            <begin position="1"/>
            <end position="521"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="496"/>
            <end position="516"/>
        </location>
    </feature>
    <feature type="domain" description="Protein kinase" evidence="1">
        <location>
            <begin position="119"/>
            <end position="497"/>
        </location>
    </feature>
    <feature type="active site" description="Proton acceptor" evidence="1">
        <location>
            <position position="286"/>
        </location>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <begin position="125"/>
            <end position="133"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <position position="151"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000255" key="1">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00414"/>
        </source>
    </evidence>
    <sequence length="521" mass="60386" checksum="AA7B6DFA647EB66E" modified="2008-01-15" version="1"> </sequence>
</entry>
<entry dataset="Swiss-Prot" created="2009-04-14" modified="2022-08-03" version="67" xmlns="http://uniprot.org/uniprot">
    <accession>A9BP69</accession>
    <name>RL27_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">50S ribosomal protein L27</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="1" type="primary">rpmA</name>
        <name type="ordered locus">Daci_5485</name>
    </gene>
    <organism>
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference key="1">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain>DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the bacterial ribosomal protein bL27 family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX38114.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012207283.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A9BP69"/>
    <dbReference type="SMR" id="A9BP69"/>
    <dbReference type="STRING" id="398578.Daci_5485"/>
    <dbReference type="PRIDE" id="A9BP69"/>
    <dbReference type="EnsemblBacteria" id="ABX38114">
        <property type="protein sequence ID" value="ABX38114"/>
        <property type="gene ID" value="Daci_5485"/>
    </dbReference>
    <dbReference type="GeneID" id="60689837"/>
    <dbReference type="KEGG" id="dac:Daci_5485"/>
    <dbReference type="eggNOG" id="COG0211">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_095424_4_1_4"/>
    <dbReference type="OMA" id="GKDHTLH"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005840">
        <property type="term" value="C:ribosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003735">
        <property type="term" value="F:structural constituent of ribosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006412">
        <property type="term" value="P:translation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00539">
        <property type="entry name" value="Ribosomal_L27"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001684">
        <property type="entry name" value="Ribosomal_L27"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018261">
        <property type="entry name" value="Ribosomal_L27_CS"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR15893">
        <property type="entry name" value="PTHR15893"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01016">
        <property type="entry name" value="Ribosomal_L27"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00063">
        <property type="entry name" value="RIBOSOMALL27"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00062">
        <property type="entry name" value="L27"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00831">
        <property type="entry name" value="RIBOSOMAL_L27"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword id="KW-1185">Reference proteome</keyword>
    <keyword id="KW-0687">Ribonucleoprotein</keyword>
    <keyword id="KW-0689">Ribosomal protein</keyword>
    <feature type="chain" id="PRO_1000128732" description="50S ribosomal protein L27">
        <location>
            <begin position="1"/>
            <end position="85"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="1"/>
            <end position="20"/>
        </location>
    </feature>
    <evidence type="ECO:0000255" key="1">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00539"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <sequence length="85" mass="8801" checksum="632C6986EB108344" modified="2008-01-15" version="1">MAQKKGGGSTRNGRDSKPKMLGVKAFGGELITAGSIIVRQRGTKFHPGDNVGVGKDHTLYALVDGHVSFAVKGALSKHTVNVTAA</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="90" xmlns="http://uniprot.org/uniprot">
    <accession>A9BPL1</accession>
    <name>A9BPL1_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="5">Methionine synthase</fullName>
            <ecNumber evidence="5">2.1.1.13</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="5">5-methyltetrahydrofolate--homocysteine methyltransferase</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="13" type="ordered locus">Daci_0232</name>
    </gene>
    <organism evidence="13 14">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="13 14" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="14">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="14" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="14">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="5">Catalyzes the transfer of a methyl group from methyl-cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Subsequently, remethylates the cofactor using methyltetrahydrofolate.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="5">
            <text>(6S)-5-methyl-5,6,7,8-tetrahydrofolate + L-homocysteine = (6S)-5,6,7,8-tetrahydrofolate + L-methionine</text>
            <dbReference type="Rhea" id="RHEA:11172"/>
            <dbReference type="ChEBI" id="CHEBI:18608"/>
            <dbReference type="ChEBI" id="CHEBI:57453"/>
            <dbReference type="ChEBI" id="CHEBI:57844"/>
            <dbReference type="ChEBI" id="CHEBI:58199"/>
            <dbReference type="EC" id="2.1.1.13"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="5">
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </cofactor>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="5 7">
            <name>methylcob(III)alamin</name>
            <dbReference type="ChEBI" id="CHEBI:28115"/>
        </cofactor>
    </comment>
    <comment type="pathway">
        <text evidence="5">Amino-acid biosynthesis; L-methionine biosynthesis via de novo pathway; L-methionine from L-homocysteine (MetH route): step 1/1.</text>
    </comment>
    <comment type="domain">
        <text evidence="5">Modular enzyme with four functionally distinct domains. The isolated Hcy-binding domain catalyzes methyl transfer from free methylcobalamin to homocysteine. The Hcy-binding domain in association with the pterin-binding domain catalyzes the methylation of cob(I)alamin by methyltetrahydrofolate and the methylation of homocysteine. The B12-binding domain binds the cofactor. The AdoMet activation domain binds S-adenosyl-L-methionine. Under aerobic conditions cob(I)alamin can be converted to inactive cob(II)alamin. Reductive methylation by S-adenosyl-L-methionine and flavodoxin regenerates methylcobalamin.</text>
    </comment>
    <comment type="similarity">
        <text evidence="1">Belongs to the vitamin-B12 dependent methionine synthase family.</text>
    </comment>
    <dbReference type="EC" id="2.1.1.13" evidence="5"/>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX32878.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_0232"/>
    <dbReference type="PRIDE" id="A9BPL1"/>
    <dbReference type="EnsemblBacteria" id="ABX32878">
        <property type="protein sequence ID" value="ABX32878"/>
        <property type="gene ID" value="Daci_0232"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_0232"/>
    <dbReference type="eggNOG" id="COG1410">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_004914_2_0_4"/>
    <dbReference type="OMA" id="ADCIAMS"/>
    <dbReference type="UniPathway" id="UPA00051">
        <property type="reaction ID" value="UER00081"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0031419">
        <property type="term" value="F:cobalamin binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008705">
        <property type="term" value="F:methionine synthase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008270">
        <property type="term" value="F:zinc ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0032259">
        <property type="term" value="P:methylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0042558">
        <property type="term" value="P:pteridine-containing compound metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd02069">
        <property type="entry name" value="methionine_synthase_B12_BD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.1240.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.10.196.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.20.20.20">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003759">
        <property type="entry name" value="Cbl-bd_cap"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006158">
        <property type="entry name" value="Cobalamin-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036724">
        <property type="entry name" value="Cobalamin-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011005">
        <property type="entry name" value="Dihydropteroate_synth-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR033706">
        <property type="entry name" value="Met_synthase_B12-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011822">
        <property type="entry name" value="MetH"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036594">
        <property type="entry name" value="Meth_synthase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000489">
        <property type="entry name" value="Pterin-binding_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004223">
        <property type="entry name" value="VitB12-dep_Met_synth_activ_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037010">
        <property type="entry name" value="VitB12-dep_Met_synth_activ_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02310">
        <property type="entry name" value="B12-binding"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02607">
        <property type="entry name" value="B12-binding_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02965">
        <property type="entry name" value="Met_synt_B12"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00809">
        <property type="entry name" value="Pterin_bind"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF000381">
        <property type="entry name" value="MetH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM01018">
        <property type="entry name" value="B12-binding_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47644">
        <property type="entry name" value="SSF47644"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51717">
        <property type="entry name" value="SSF51717"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52242">
        <property type="entry name" value="SSF52242"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56507">
        <property type="entry name" value="SSF56507"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR02082">
        <property type="entry name" value="metH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50974">
        <property type="entry name" value="ADOMET_ACTIVATION"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51332">
        <property type="entry name" value="B12_BINDING"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51337">
        <property type="entry name" value="B12_BINDING_NTER"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50972">
        <property type="entry name" value="PTERIN_BINDING"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-0028">Amino-acid biosynthesis</keyword>
    <keyword evidence="5 7" id="KW-0846">Cobalamin</keyword>
    <keyword evidence="4 5 6" id="KW-0170">Cobalt</keyword>
    <keyword evidence="5 6" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="5" id="KW-0486">Methionine biosynthesis</keyword>
    <keyword evidence="5 8 13" id="KW-0489">Methyltransferase</keyword>
    <keyword evidence="14" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0677">Repeat</keyword>
    <keyword evidence="2 5 7" id="KW-0949">S-adenosyl-L-methionine</keyword>
    <keyword evidence="5 8 13" id="KW-0808">Transferase</keyword>
    <keyword evidence="5" id="KW-0862">Zinc</keyword>
    <feature type="domain" description="Pterin-binding" evidence="9">
        <location>
            <begin position="26"/>
            <end position="287"/>
        </location>
    </feature>
    <feature type="domain" description="B12-binding N-terminal" evidence="12">
        <location>
            <begin position="322"/>
            <end position="421"/>
        </location>
    </feature>
    <feature type="domain" description="B12-binding" evidence="11">
        <location>
            <begin position="430"/>
            <end position="569"/>
        </location>
    </feature>
    <feature type="domain" description="AdoMet activation" evidence="10">
        <location>
            <begin position="583"/>
            <end position="918"/>
        </location>
    </feature>
    <feature type="region of interest" description="Methylcob(III)alamin binding" evidence="7">
        <location>
            <begin position="440"/>
            <end position="444"/>
        </location>
    </feature>
    <feature type="region of interest" description="S-adenosyl-L-methionine binding" evidence="7">
        <location>
            <begin position="884"/>
            <end position="885"/>
        </location>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <position position="371"/>
        </location>
        <ligand>
            <name>methylcob(III)alamin</name>
            <dbReference type="ChEBI" id="CHEBI:28115"/>
        </ligand>
    </feature>
    <feature type="binding site" description="axial binding residue" evidence="6">
        <location>
            <position position="443"/>
        </location>
        <ligand>
            <name>methylcob(III)alamin</name>
            <dbReference type="ChEBI" id="CHEBI:28115"/>
        </ligand>
        <ligandPart>
            <name>Co</name>
            <dbReference type="ChEBI" id="CHEBI:27638"/>
        </ligandPart>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <position position="488"/>
        </location>
        <ligand>
            <name>methylcob(III)alamin</name>
            <dbReference type="ChEBI" id="CHEBI:28115"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <position position="492"/>
        </location>
        <ligand>
            <name>methylcob(III)alamin</name>
            <dbReference type="ChEBI" id="CHEBI:28115"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <position position="548"/>
        </location>
        <ligand>
            <name>methylcob(III)alamin</name>
            <dbReference type="ChEBI" id="CHEBI:28115"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <position position="632"/>
        </location>
        <ligand>
            <name>S-adenosyl-L-methionine</name>
            <dbReference type="ChEBI" id="CHEBI:59789"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <position position="830"/>
        </location>
        <ligand>
            <name>S-adenosyl-L-methionine</name>
            <dbReference type="ChEBI" id="CHEBI:59789"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00010398"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022691"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022737"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023285"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="PIRNR" id="PIRNR000381"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="PIRSR" id="PIRSR000381-1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="PIRSR" id="PIRSR000381-2"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00346"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="9">
        <source>
            <dbReference type="PROSITE" id="PS50972"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="10">
        <source>
            <dbReference type="PROSITE" id="PS50974"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="11">
        <source>
            <dbReference type="PROSITE" id="PS51332"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="12">
        <source>
            <dbReference type="PROSITE" id="PS51337"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="13">
        <source>
            <dbReference type="EMBL" id="ABX32878.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="14">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="918" mass="100860" checksum="D8A2A0DCABE6BCF7" modified="2008-01-15" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="59" xmlns="http://uniprot.org/uniprot">
    <accession>A9BPP8</accession>
    <name>A9BPP8_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Hemerythrin-like metal-binding protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ordered locus">Daci_0371</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="5" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the hemerythrin family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX33017.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012202310.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_0371"/>
    <dbReference type="PRIDE" id="A9BPP8"/>
    <dbReference type="EnsemblBacteria" id="ABX33017">
        <property type="protein sequence ID" value="ABX33017"/>
        <property type="gene ID" value="Daci_0371"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_0371"/>
    <dbReference type="eggNOG" id="COG2703">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_086902_1_0_4"/>
    <dbReference type="OMA" id="QEDRWMQ"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd12107">
        <property type="entry name" value="Hemerythrin"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.120.50">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035938">
        <property type="entry name" value="Hemerythrin-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012827">
        <property type="entry name" value="Hemerythrin_metal-bd"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47188">
        <property type="entry name" value="SSF47188"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR02481">
        <property type="entry name" value="hemeryth_dom"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-0408">Iron</keyword>
    <keyword evidence="2" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00010587"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023004"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="ABX33017.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="166" mass="17866" checksum="BEBEC8B6A41EB1EC" modified="2008-01-15" version="1">MAVLEWSGALALELPAMDEVHQEFVLLLAEVEAADDAQLCARWDELIAHTQVHFDQEDRWMQSTRFTSTNCHSLQHKVVMQVMREGAAKAVAGDLAVIRSMAGELAAWFVHHAQTMDAALALHLRSAGFDPATGSLAHPEALPEQPITGCGGACDGSADRARAVPA</sequence>
</entry>
<entry dataset="Swiss-Prot" created="2009-04-14" modified="2022-08-03" version="81" xmlns="http://uniprot.org/uniprot">
    <accession>A9BPU7</accession>
    <name>ATPB_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">ATP synthase subunit beta</fullName>
            <ecNumber evidence="1">7.1.2.2</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="1">ATP synthase F1 sector subunit beta</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="1">F-ATPase subunit beta</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="1" type="primary">atpD</name>
        <name type="ordered locus">Daci_0420</name>
    </gene>
    <organism>
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference key="1">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain>DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="1">Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>ATP + 4 H(+)(in) + H2O = ADP + 5 H(+)(out) + phosphate</text>
            <dbReference type="Rhea" id="RHEA:57720"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:43474"/>
            <dbReference type="ChEBI" id="CHEBI:456216"/>
            <dbReference type="EC" id="7.1.2.2"/>
        </reaction>
    </comment>
    <comment type="subunit">
        <text evidence="1">F-type ATPases have 2 components, CF(1) - the catalytic core - and CF(0) - the membrane proton channel. CF(1) has five subunits: alpha(3), beta(3), gamma(1), delta(1), epsilon(1). CF(0) has three main subunits: a(1), b(2) and c(9-12). The alpha and beta chains form an alternating ring which encloses part of the gamma chain. CF(1) is attached to CF(0) by a central stalk formed by the gamma and epsilon chains, while a peripheral stalk is formed by the delta and b chains.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Cell inner membrane</location>
            <topology evidence="1">Peripheral membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="1">Belongs to the ATPase alpha/beta chains family.</text>
    </comment>
    <dbReference type="EC" id="7.1.2.2" evidence="1"/>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX33066.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012202357.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A9BPU7"/>
    <dbReference type="SMR" id="A9BPU7"/>
    <dbReference type="STRING" id="398578.Daci_0420"/>
    <dbReference type="PRIDE" id="A9BPU7"/>
    <dbReference type="EnsemblBacteria" id="ABX33066">
        <property type="protein sequence ID" value="ABX33066"/>
        <property type="gene ID" value="Daci_0420"/>
    </dbReference>
    <dbReference type="GeneID" id="60690827"/>
    <dbReference type="KEGG" id="dac:Daci_0420"/>
    <dbReference type="eggNOG" id="COG0055">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_022398_0_2_4"/>
    <dbReference type="OMA" id="GFNMIMD"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0045261">
        <property type="term" value="C:proton-transporting ATP synthase complex, catalytic core F(1)"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046933">
        <property type="term" value="F:proton-transporting ATP synthase activity, rotational mechanism"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046961">
        <property type="term" value="F:proton-transporting ATPase activity, rotational mechanism"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.1140.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01347">
        <property type="entry name" value="ATP_synth_beta_bact"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003593">
        <property type="entry name" value="AAA+_ATPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005722">
        <property type="entry name" value="ATP_synth_F1_bsu"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020003">
        <property type="entry name" value="ATPase_a/bsu_AS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004100">
        <property type="entry name" value="ATPase_F1/V1/A1_a/bsu_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036121">
        <property type="entry name" value="ATPase_F1/V1/A1_a/bsu_N_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000194">
        <property type="entry name" value="ATPase_F1/V1/A1_a/bsu_nucl-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR024034">
        <property type="entry name" value="ATPase_F1/V1_b/a_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00006">
        <property type="entry name" value="ATP-synt_ab"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02874">
        <property type="entry name" value="ATP-synt_ab_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00382">
        <property type="entry name" value="AAA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50615">
        <property type="entry name" value="SSF50615"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01039">
        <property type="entry name" value="atpD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00152">
        <property type="entry name" value="ATPASE_ALPHA_BETA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword id="KW-0066">ATP synthesis</keyword>
    <keyword id="KW-0067">ATP-binding</keyword>
    <keyword id="KW-0997">Cell inner membrane</keyword>
    <keyword id="KW-1003">Cell membrane</keyword>
    <keyword id="KW-0139">CF(1)</keyword>
    <keyword id="KW-0375">Hydrogen ion transport</keyword>
    <keyword id="KW-0406">Ion transport</keyword>
    <keyword id="KW-0472">Membrane</keyword>
    <keyword id="KW-0547">Nucleotide-binding</keyword>
    <keyword id="KW-1185">Reference proteome</keyword>
    <keyword id="KW-1278">Translocase</keyword>
    <keyword id="KW-0813">Transport</keyword>
    <feature type="chain" id="PRO_1000143494" description="ATP synthase subunit beta">
        <location>
            <begin position="1"/>
            <end position="469"/>
        </location>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <begin position="150"/>
            <end position="157"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000255" key="1">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01347"/>
        </source>
    </evidence>
    <sequence length="469" mass="50494" checksum="917DC1E820E92028" modified="2008-01-15" version="1">MAQVQGKIVQCIGAVVDVEFPRNAMPKVFDALKLDGSALTLEVQQLLGDGVVRTIALGSSDGLRRGLMVSNTGNPITVPVGKATLGRIMDVLGNPIDERGPVDQALTAPIHRKAPAYDELSPSQELLETGIKVIDLISPFAKGGKVGLFGGAGVGKTVNMMELINNIAKGHGGLSVFAGVGERTREGNDFYHEMSDAGVVNQESLNDSKVAMVYGQMNEPPGNRLRVALTGLTMAEAFRDEGKDVLFFVDNIYRYTLAGTEVSALLGRMPSAVGYQPTLAEEMGRLQERITSTKVGSITSIQAVYVPADDLTDPSPATTFAHLDSTVVLSRDIASLGIYPAVDPLDSTSRQLDPQVVGEEHYKVAREVQGTLQRYKELRDIIAILGMDELAPEDKLTVARARKIQRFLSQPFHVAEVFTGAPGKYVSLAETIRGFKMICAGECDHLPEQAFYMVGTIDEAFEKAKKLAA</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="42" xmlns="http://uniprot.org/uniprot">
    <accession>A9BPW0</accession>
    <name>A9BPW0_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Putative lipoprotein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_0433</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX33079.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012202370.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_0433"/>
    <dbReference type="PRIDE" id="A9BPW0"/>
    <dbReference type="EnsemblBacteria" id="ABX33079">
        <property type="protein sequence ID" value="ABX33079"/>
        <property type="gene ID" value="Daci_0433"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_0433"/>
    <dbReference type="eggNOG" id="COG5314">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_2168795_0_0_4"/>
    <dbReference type="OMA" id="DGAFCAQ"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0449">Lipoprotein</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="65"/>
            <end position="99"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX33079.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="99" mass="10428" checksum="BA8B1D011847104F" modified="2008-01-15" version="1">MKYAPVVFALAFLLSGCDQPLSVASLAADPSRLHTLRAQCRTGAHDGAFCAQVAQADLRRFLSGQTGPSEYQTLADLPPIPPSFDEPADADAPGQEDSP</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="49" xmlns="http://uniprot.org/uniprot">
    <accession>A9BPY8</accession>
    <name>A9BPY8_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Robl_LC7 domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_0557</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX33203.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012202489.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_0557"/>
    <dbReference type="PRIDE" id="A9BPY8"/>
    <dbReference type="EnsemblBacteria" id="ABX33203">
        <property type="protein sequence ID" value="ABX33203"/>
        <property type="gene ID" value="Daci_0557"/>
    </dbReference>
    <dbReference type="GeneID" id="60690900"/>
    <dbReference type="KEGG" id="dac:Daci_0557"/>
    <dbReference type="eggNOG" id="COG2018">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_150662_0_0_4"/>
    <dbReference type="OMA" id="HNILMNT"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004942">
        <property type="entry name" value="Roadblock/LAMTOR2_dom"/>
    </dbReference>
    <dbReference type="SMART" id="SM00960">
        <property type="entry name" value="Robl_LC7"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Robl_LC7" evidence="1">
        <location>
            <begin position="17"/>
            <end position="110"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="SMART" id="SM00960"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX33203.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="133" mass="14149" checksum="BEDBEA474CB6F3EF" modified="2008-01-15" version="1">MKTPTLPRIPPSLIEAGSDVLHRVVAPLEGVHIALLCTPDGFEITSLRVRSELPTERLSAMAGSLMAMARAVATEIGHKSCRRLTFETELGTVLFQAVAGNQPAILCMVVDQSALLGRALWAAGEVASELSRS</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="80" xmlns="http://uniprot.org/uniprot">
    <accession>A9BQ54</accession>
    <name>A9BQ54_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="9">Flagellar hook-associated protein 3</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="9" type="ordered locus">Daci_0623</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="9 10" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="10" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Bacterial flagellum</location>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="2">Secreted</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="3">Belongs to the bacterial flagellin family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX33269.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012202555.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_0623"/>
    <dbReference type="PRIDE" id="A9BQ54"/>
    <dbReference type="EnsemblBacteria" id="ABX33269">
        <property type="protein sequence ID" value="ABX33269"/>
        <property type="gene ID" value="Daci_0623"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_0623"/>
    <dbReference type="eggNOG" id="COG1344">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_024437_5_0_4"/>
    <dbReference type="OMA" id="INRVSHP"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009424">
        <property type="term" value="C:bacterial-type flagellum hook"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005576">
        <property type="term" value="C:extracellular region"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005198">
        <property type="term" value="F:structural molecule activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0071973">
        <property type="term" value="P:bacterial-type flagellum-dependent cell motility"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013384">
        <property type="entry name" value="Flagell_FlgL"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001492">
        <property type="entry name" value="Flagellin"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR046358">
        <property type="entry name" value="Flagellin_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001029">
        <property type="entry name" value="Flagellin_N"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR42792">
        <property type="entry name" value="PTHR42792"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00700">
        <property type="entry name" value="Flagellin_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00669">
        <property type="entry name" value="Flagellin_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR02550">
        <property type="entry name" value="flagell_flgL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-0975">Bacterial flagellum</keyword>
    <keyword evidence="9" id="KW-0966">Cell projection</keyword>
    <keyword evidence="9" id="KW-0969">Cilium</keyword>
    <keyword evidence="5" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="9" id="KW-0282">Flagellum</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Flagellin_N" evidence="7">
        <location>
            <begin position="7"/>
            <end position="141"/>
        </location>
    </feature>
    <feature type="domain" description="Flagellin_C" evidence="8">
        <location>
            <begin position="317"/>
            <end position="397"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="6">
        <location>
            <begin position="145"/>
            <end position="170"/>
        </location>
    </feature>
    <feature type="coiled-coil region" evidence="5">
        <location>
            <begin position="332"/>
            <end position="363"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="6">
        <location>
            <begin position="150"/>
            <end position="168"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004365"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00004613"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00005709"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023143"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="Pfam" id="PF00669"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="Pfam" id="PF00700"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="ABX33269.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="399" mass="42125" checksum="1C4BCE3365F0AC60" modified="2008-01-15" version="1">MSISRIGTANMYDSTINNLNSRNTSLVDLMEKTTSGKRVVRASDDPVAAAQAERALTRISRSENDQRVLGLQRDVMAQGESKLGTAQDALKDFRDLILQSGNGSYDQKARDALVQQLESLRNQVLSYANAKDSNGLPIFRGLGSKEDPLVNSTPGANSQLQPGQATGSENGLPLALDGFATWMNVPTGNGVFAVSRQSPTGSSAYADLGTVSDPSAITGASYTLNFTKDATTGALSYTVTSGGTTGTAVPYTAGDSITVGGMSMKISGNLATGDSFTLAPSQRTDLFSVLDNVIAGVKNGATDAGAMQQALGRGLNELDAGMSRVQAMRSFAGDQLNRADRLEDDMKNQADQQEAARSRAEDIDMIKALSDVDMQKVGMQAALQSYASIQKLSLFNFIN</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="63" xmlns="http://uniprot.org/uniprot">
    <accession>A9BQ55</accession>
    <name>A9BQ55_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="4">Flagellar hook-associated protein 1</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="8" type="ordered locus">Daci_0624</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="9" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Bacterial flagellum</location>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="2">Secreted</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="3">Belongs to the flagella basal body rod proteins family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX33270.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_0624"/>
    <dbReference type="PRIDE" id="A9BQ55"/>
    <dbReference type="EnsemblBacteria" id="ABX33270">
        <property type="protein sequence ID" value="ABX33270"/>
        <property type="gene ID" value="Daci_0624"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_0624"/>
    <dbReference type="eggNOG" id="COG1256">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_012762_0_0_4"/>
    <dbReference type="OMA" id="KPQAAYM"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009424">
        <property type="term" value="C:bacterial-type flagellum hook"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005576">
        <property type="term" value="C:extracellular region"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005198">
        <property type="term" value="F:structural molecule activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0044780">
        <property type="term" value="P:bacterial-type flagellum assembly"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010930">
        <property type="entry name" value="Flg_bb/hook_C_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002371">
        <property type="entry name" value="FlgK"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30033">
        <property type="entry name" value="PTHR30033"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF06429">
        <property type="entry name" value="Flg_bbr_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR01005">
        <property type="entry name" value="FLGHOOKAP1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR02492">
        <property type="entry name" value="flgK_ends"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="6" id="KW-0975">Bacterial flagellum</keyword>
    <keyword evidence="8" id="KW-0966">Cell projection</keyword>
    <keyword evidence="8" id="KW-0969">Cilium</keyword>
    <keyword evidence="8" id="KW-0282">Flagellum</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="5" id="KW-0964">Secreted</keyword>
    <feature type="domain" description="Flg_bbr_C" evidence="7">
        <location>
            <begin position="589"/>
            <end position="638"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004365"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00004613"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00009677"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00016244"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022525"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023143"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="Pfam" id="PF06429"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="ABX33270.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="642" mass="66614" checksum="9332888F2EA5888A" modified="2008-01-15" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="80" xmlns="http://uniprot.org/uniprot">
    <accession>A9BQC3</accession>
    <name>A9BQC3_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="4">Peptidoglycan glycosyltransferase</fullName>
            <ecNumber evidence="4">2.4.1.129</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="20" type="ordered locus">Daci_0887</name>
    </gene>
    <organism evidence="20 21">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="20 21" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="21">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="21" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="21">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="15">
            <text>[GlcNAc-(1-&gt;4)-Mur2Ac(oyl-L-Ala-gamma-D-Glu-L-Lys-D-Ala-D-Ala)](n)-di-trans,octa-cis-undecaprenyl diphosphate + beta-D-GlcNAc-(1-&gt;4)-Mur2Ac(oyl-L-Ala-gamma-D-Glu-L-Lys-D-Ala-D-Ala)-di-trans,octa-cis-undecaprenyl diphosphate = [GlcNAc-(1-&gt;4)-Mur2Ac(oyl-L-Ala-gamma-D-Glu-L-Lys-D-Ala-D-Ala)](n+1)-di-trans-octa-cis-undecaprenyl diphosphate + di-trans,octa-cis-undecaprenyl diphosphate + H(+)</text>
            <dbReference type="Rhea" id="RHEA:23708"/>
            <dbReference type="Rhea" id="RHEA-COMP:9602"/>
            <dbReference type="Rhea" id="RHEA-COMP:9603"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:58405"/>
            <dbReference type="ChEBI" id="CHEBI:60033"/>
            <dbReference type="ChEBI" id="CHEBI:78435"/>
            <dbReference type="EC" id="2.4.1.129"/>
        </reaction>
    </comment>
    <comment type="pathway">
        <text evidence="1">Cell wall biogenesis; peptidoglycan biosynthesis.</text>
    </comment>
    <comment type="similarity">
        <text evidence="2">In the C-terminal section; belongs to the transpeptidase family.</text>
    </comment>
    <comment type="similarity">
        <text evidence="3">In the N-terminal section; belongs to the glycosyltransferase 51 family.</text>
    </comment>
    <dbReference type="EC" id="2.4.1.129" evidence="4"/>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX33533.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012202819.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_0887"/>
    <dbReference type="CAZy" id="GT51">
        <property type="family name" value="Glycosyltransferase Family 51"/>
    </dbReference>
    <dbReference type="PRIDE" id="A9BQC3"/>
    <dbReference type="EnsemblBacteria" id="ABX33533">
        <property type="protein sequence ID" value="ABX33533"/>
        <property type="gene ID" value="Daci_0887"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_0887"/>
    <dbReference type="eggNOG" id="COG5009">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_006354_2_4_4"/>
    <dbReference type="OMA" id="AVQMPYI"/>
    <dbReference type="UniPathway" id="UPA00219"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004180">
        <property type="term" value="F:carboxypeptidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008658">
        <property type="term" value="F:penicillin binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008955">
        <property type="term" value="F:peptidoglycan glycosyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0071555">
        <property type="term" value="P:cell wall organization"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009252">
        <property type="term" value="P:peptidoglycan biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniPathway"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006508">
        <property type="term" value="P:proteolysis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008360">
        <property type="term" value="P:regulation of cell shape"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.3810.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.710.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012338">
        <property type="entry name" value="Beta-lactam/transpept-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001264">
        <property type="entry name" value="Glyco_trans_51"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023346">
        <property type="entry name" value="Lysozyme-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036950">
        <property type="entry name" value="PBP_transglycosylase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001460">
        <property type="entry name" value="PCN-bd_Tpept"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00912">
        <property type="entry name" value="Transgly"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00905">
        <property type="entry name" value="Transpeptidase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53955">
        <property type="entry name" value="SSF53955"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56601">
        <property type="entry name" value="SSF56601"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-0121">Carboxypeptidase</keyword>
    <keyword evidence="10" id="KW-0133">Cell shape</keyword>
    <keyword evidence="14" id="KW-0961">Cell wall biogenesis/degradation</keyword>
    <keyword evidence="7 20" id="KW-0328">Glycosyltransferase</keyword>
    <keyword evidence="9" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="17" id="KW-0472">Membrane</keyword>
    <keyword evidence="13" id="KW-0511">Multifunctional enzyme</keyword>
    <keyword evidence="11" id="KW-0573">Peptidoglycan synthesis</keyword>
    <keyword evidence="6" id="KW-0645">Protease</keyword>
    <keyword evidence="21" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="20" id="KW-0808">Transferase</keyword>
    <keyword evidence="8 17" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="12 17" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="17">
        <location>
            <begin position="45"/>
            <end position="66"/>
        </location>
    </feature>
    <feature type="domain" description="Transgly" evidence="19">
        <location>
            <begin position="89"/>
            <end position="264"/>
        </location>
    </feature>
    <feature type="domain" description="Transpeptidase" evidence="18">
        <location>
            <begin position="428"/>
            <end position="659"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="16">
        <location>
            <begin position="380"/>
            <end position="401"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="16">
        <location>
            <begin position="741"/>
            <end position="841"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Pro residues" evidence="16">
        <location>
            <begin position="746"/>
            <end position="778"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="16">
        <location>
            <begin position="794"/>
            <end position="814"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004752"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00007090"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00007739"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00012555"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022645"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022670"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022676"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00022960"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="ARBA" id="ARBA00022984"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="12">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="13">
        <source>
            <dbReference type="ARBA" id="ARBA00023268"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="14">
        <source>
            <dbReference type="ARBA" id="ARBA00023316"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="15">
        <source>
            <dbReference type="ARBA" id="ARBA00023988"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="16">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="17">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="18">
        <source>
            <dbReference type="Pfam" id="PF00905"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="19">
        <source>
            <dbReference type="Pfam" id="PF00912"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="20">
        <source>
            <dbReference type="EMBL" id="ABX33533.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="21">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="841" mass="93350" checksum="876C0DE946F71EB7" modified="2008-01-15" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="81" xmlns="http://uniprot.org/uniprot">
    <accession>A9BQV4</accession>
    <name>A9BQV4_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="8">ABC transporter related</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="8" type="ordered locus">Daci_0263</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="9" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX32909.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012202202.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_0263"/>
    <dbReference type="PRIDE" id="A9BQV4"/>
    <dbReference type="EnsemblBacteria" id="ABX32909">
        <property type="protein sequence ID" value="ABX32909"/>
        <property type="gene ID" value="Daci_0263"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_0263"/>
    <dbReference type="eggNOG" id="COG0410">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_000604_1_2_4"/>
    <dbReference type="OMA" id="REKQHDP"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003593">
        <property type="entry name" value="AAA+_ATPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003439">
        <property type="entry name" value="ABC_transporter-like_ATP-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017871">
        <property type="entry name" value="ABC_transporter-like_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00005">
        <property type="entry name" value="ABC_tran"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00382">
        <property type="entry name" value="AAA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00211">
        <property type="entry name" value="ABC_TRANSPORTER_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50893">
        <property type="entry name" value="ABC_TRANSPORTER_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3 6" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="1" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="5" id="KW-0472">Membrane</keyword>
    <keyword evidence="2 6" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4" id="KW-1278">Translocase</keyword>
    <feature type="domain" description="ABC transporter" evidence="7">
        <location>
            <begin position="2"/>
            <end position="235"/>
        </location>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <begin position="34"/>
            <end position="41"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022967"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00434"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="PROSITE" id="PS50893"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="ABX32909.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="235" mass="25165" checksum="09E7DC571C42D4A4" modified="2008-01-15" version="1">MLKFENVSLRYGSFLALDGVSLHADRGELVVLLGANGAGKSSLFLTASGIHKAAGGSIVWNGRELAGSKPSAIVQSGVVQCPEGRKLFPQMSVLRNLQLGAYVHRRDPGPSQKTLQEVMELFPILREKQHDPAGSLSGGQQQMVAIGRAMMGRPQALLLDEPSLGLAPLVIKQMFEAIQRINAAGTTVLLAEQNAYAALKIAHRAYVMESGRIVREGKPAELLADDSIRKAYIGA</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="61" xmlns="http://uniprot.org/uniprot">
    <accession>A9BR63</accession>
    <name>A9BR63_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Putative outer membrane cation efflux protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ordered locus">Daci_0475</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="5" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the outer membrane factor (OMF) (TC 1.B.17) family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX33121.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012202407.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_0475"/>
    <dbReference type="PRIDE" id="A9BR63"/>
    <dbReference type="EnsemblBacteria" id="ABX33121">
        <property type="protein sequence ID" value="ABX33121"/>
        <property type="gene ID" value="Daci_0475"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_0475"/>
    <dbReference type="eggNOG" id="COG1538">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_012817_15_1_4"/>
    <dbReference type="OMA" id="REGMTMQ"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015562">
        <property type="term" value="F:efflux transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003423">
        <property type="entry name" value="OMP_efflux"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02321">
        <property type="entry name" value="OEP"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="3">
        <location>
            <begin position="1"/>
            <end position="37"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5002733011" evidence="3">
        <location>
            <begin position="38"/>
            <end position="437"/>
        </location>
    </feature>
    <feature type="coiled-coil region" evidence="2">
        <location>
            <begin position="195"/>
            <end position="229"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00007613"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="ABX33121.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="437" mass="48045" checksum="3882A3C1E161099F" modified="2008-01-15" version="1">MFIDSFSFRTPGGAVPWRRLAAGIVAAFAMGAGAAHAADGLTLDQALRLAQTRSRALVAQDATASAARDMAVAAGQRPDPTLKLGINNLPVNGADRFSPTRDFMTMRSIGVMQEFTREDKLKARAGRYEREAEVAEAGRSLALANLQRDTALAWLDRLFQERVRDMLVTQRDEARLQIDAADAAYRGGRGTQADVFAARSAVAQIDDRIEQAERQVATARTQLARWIGSVASDPLGSVPALDMVRLSPQDLEAQLAHHPEIAVMQKQEEVAQAEADIAQANKKTDVSVELMYSQRGPAYSNMVSLNVSIPLQWDQKNRQDRELAAKLASVEQKRAEREEATRAHVAEALAMLQEWRSDRERLARYDSSLLPLATERTRASIAAYRGNAGTLTAVLEARRAEIDTRVERLRLEMGAARLWAQLNYLVPAGHDTAAPRP</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="92" xmlns="http://uniprot.org/uniprot">
    <accession>A9BRA3</accession>
    <name>A9BRA3_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="4">Histidine kinase</fullName>
            <ecNumber evidence="4">2.7.13.3</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="12" type="ordered locus">Daci_0515</name>
    </gene>
    <organism evidence="12 13">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="12 13" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="13">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="13" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="13">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>ATP + protein L-histidine = ADP + protein N-phospho-L-histidine.</text>
            <dbReference type="EC" id="2.7.13.3"/>
        </reaction>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="3">Cell membrane</location>
            <topology evidence="3">Multi-pass membrane protein</topology>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="2">Membrane</location>
            <topology evidence="2">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <dbReference type="EC" id="2.7.13.3" evidence="4"/>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX33161.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012202447.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_0515"/>
    <dbReference type="EnsemblBacteria" id="ABX33161">
        <property type="protein sequence ID" value="ABX33161"/>
        <property type="gene ID" value="Daci_0515"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_0515"/>
    <dbReference type="eggNOG" id="COG5000">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_019564_0_0_4"/>
    <dbReference type="OMA" id="SKFARMP"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000155">
        <property type="term" value="F:phosphorelay sensor kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd00082">
        <property type="entry name" value="HisKA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.565.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003660">
        <property type="entry name" value="HAMP_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003594">
        <property type="entry name" value="HATPase_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036890">
        <property type="entry name" value="HATPase_C_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005467">
        <property type="entry name" value="His_kinase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003661">
        <property type="entry name" value="HisK_dim/P"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036097">
        <property type="entry name" value="HisK_dim/P_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017232">
        <property type="entry name" value="NtrY"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045671">
        <property type="entry name" value="NtrY-like_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000014">
        <property type="entry name" value="PAS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035965">
        <property type="entry name" value="PAS-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004358">
        <property type="entry name" value="Sig_transdc_His_kin-like_C"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00672">
        <property type="entry name" value="HAMP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02518">
        <property type="entry name" value="HATPase_c"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00512">
        <property type="entry name" value="HisKA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF19312">
        <property type="entry name" value="NtrY_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF037532">
        <property type="entry name" value="STHK_NtrY"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00344">
        <property type="entry name" value="BCTRLSENSOR"/>
    </dbReference>
    <dbReference type="SMART" id="SM00304">
        <property type="entry name" value="HAMP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00387">
        <property type="entry name" value="HATPase_c"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00388">
        <property type="entry name" value="HisKA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47384">
        <property type="entry name" value="SSF47384"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55785">
        <property type="entry name" value="SSF55785"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55874">
        <property type="entry name" value="SSF55874"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50885">
        <property type="entry name" value="HAMP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50109">
        <property type="entry name" value="HIS_KIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50112">
        <property type="entry name" value="PAS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="7 12" id="KW-0418">Kinase</keyword>
    <keyword evidence="8" id="KW-0472">Membrane</keyword>
    <keyword evidence="5" id="KW-0597">Phosphoprotein</keyword>
    <keyword evidence="13" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="6" id="KW-0808">Transferase</keyword>
    <keyword evidence="8" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="8" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="25"/>
            <end position="49"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="61"/>
            <end position="85"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="97"/>
            <end position="119"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="330"/>
            <end position="353"/>
        </location>
    </feature>
    <feature type="domain" description="HAMP" evidence="11">
        <location>
            <begin position="355"/>
            <end position="407"/>
        </location>
    </feature>
    <feature type="domain" description="PAS" evidence="10">
        <location>
            <begin position="419"/>
            <end position="454"/>
        </location>
    </feature>
    <feature type="domain" description="Histidine kinase" evidence="9">
        <location>
            <begin position="553"/>
            <end position="778"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00000085"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00004651"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00012438"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022553"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022777"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="9">
        <source>
            <dbReference type="PROSITE" id="PS50109"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="10">
        <source>
            <dbReference type="PROSITE" id="PS50112"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="11">
        <source>
            <dbReference type="PROSITE" id="PS50885"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="EMBL" id="ABX33161.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="13">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="780" mass="83770" checksum="355F7A85A1506384" modified="2008-01-15" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="80" xmlns="http://uniprot.org/uniprot">
    <accession>A9BRN6</accession>
    <name>A9BRN6_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Transcriptional regulator, IclR family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ordered locus">Daci_0957</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="6" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX33603.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012202889.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_0957"/>
    <dbReference type="PRIDE" id="A9BRN6"/>
    <dbReference type="EnsemblBacteria" id="ABX33603">
        <property type="protein sequence ID" value="ABX33603"/>
        <property type="gene ID" value="Daci_0957"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_0957"/>
    <dbReference type="eggNOG" id="COG1414">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_062618_0_1_4"/>
    <dbReference type="OMA" id="DTTETIH"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006355">
        <property type="term" value="P:regulation of transcription, DNA-templated"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.450.40">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029016">
        <property type="entry name" value="GAF-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014757">
        <property type="entry name" value="Tscrpt_reg_IclR_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005471">
        <property type="entry name" value="Tscrpt_reg_IclR_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036390">
        <property type="entry name" value="WH_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF09339">
        <property type="entry name" value="HTH_IclR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01614">
        <property type="entry name" value="IclR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00346">
        <property type="entry name" value="HTH_ICLR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46785">
        <property type="entry name" value="SSF46785"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51077">
        <property type="entry name" value="HTH_ICLR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51078">
        <property type="entry name" value="ICLR_ED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0804">Transcription</keyword>
    <keyword evidence="1" id="KW-0805">Transcription regulation</keyword>
    <feature type="domain" description="HTH iclR-type" evidence="3">
        <location>
            <begin position="25"/>
            <end position="87"/>
        </location>
    </feature>
    <feature type="domain" description="IclR-ED" evidence="4">
        <location>
            <begin position="88"/>
            <end position="271"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023015"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023163"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="PROSITE" id="PS51077"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="PROSITE" id="PS51078"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="ABX33603.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="295" mass="31972" checksum="6CCAC04451126BBB" modified="2008-01-15" version="1">MTDTTPSGNAESAESADNGADKYMVPALERGLRLLQEFGRGNATLGAPELARRLQLPRATIFRMLNTLEAMGFLQRAEGSNDYRLGLSVLRLGFEFLSSMDLTELGQPVIARLCGEIRYPCNIVVRDGRSIVYVAKVTPPTPLTSSVRVGTRLPAHATALGRVLLADLSLSELRTLYPEEHLEAHTPKTPRTVLDLFNLVEADRERGHVFSEGFYESSICTIAAPVRDHSGRVVAALGTTVPAPHVEEGRAETLIAGVCDAAAELSELLNYRPQTQTQTAQLLSLNSRRAGGGHV</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="73" xmlns="http://uniprot.org/uniprot">
    <accession>A9BRU3</accession>
    <name>A9BRU3_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Ferritin Dps family protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ordered locus">Daci_1014</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="6" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1 2">Belongs to the Dps family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX33660.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012202946.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_1014"/>
    <dbReference type="PRIDE" id="A9BRU3"/>
    <dbReference type="EnsemblBacteria" id="ABX33660">
        <property type="protein sequence ID" value="ABX33660"/>
        <property type="gene ID" value="Daci_1014"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_1014"/>
    <dbReference type="eggNOG" id="COG0783">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_098183_2_1_4"/>
    <dbReference type="OMA" id="LYLQTHN"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008199">
        <property type="term" value="F:ferric iron binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016722">
        <property type="term" value="F:oxidoreductase activity, acting on metal ions"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd01043">
        <property type="entry name" value="DPS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.1260.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002177">
        <property type="entry name" value="DPS_DNA-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023188">
        <property type="entry name" value="DPS_DNA-bd_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012347">
        <property type="entry name" value="Ferritin-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009078">
        <property type="entry name" value="Ferritin-like_SF"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008331">
        <property type="entry name" value="Ferritin_DPS_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR42932">
        <property type="entry name" value="PTHR42932"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00210">
        <property type="entry name" value="Ferritin"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR01346">
        <property type="entry name" value="HELNAPAPROT"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47240">
        <property type="entry name" value="SSF47240"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00819">
        <property type="entry name" value="DPS_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Ferritin" evidence="4">
        <location>
            <begin position="61"/>
            <end position="201"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="3">
        <location>
            <begin position="1"/>
            <end position="25"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="3">
        <location>
            <begin position="1"/>
            <end position="21"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00009497"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="RuleBase" id="RU003875"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="Pfam" id="PF00210"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="ABX33660.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="201" mass="21756" checksum="E31950A08AB319A8" modified="2008-01-15" version="1">MAKNASKDKSGAKKPEAVQADKADKAVQPAKAALADVAPASVRSSAIHIGISDKDRAAIAKGLSALLADTYTLYLTTHNFHWNVTGPMFNTLHTMFMGQYTELWNAVDPIAERIRALGHFAPGSYADFGKLTSLADVPHDPPKALEMVRILVAGHEAVARTARSLFPQADKASDEPTADLLTQRLTVHEQTAWMLRALLED</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="72" xmlns="http://uniprot.org/uniprot">
    <accession>A9BS17</accession>
    <name>A9BS17_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">PRK domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_0781</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX33427.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012202713.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_0781"/>
    <dbReference type="PRIDE" id="A9BS17"/>
    <dbReference type="EnsemblBacteria" id="ABX33427">
        <property type="protein sequence ID" value="ABX33427"/>
        <property type="gene ID" value="Daci_0781"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_0781"/>
    <dbReference type="eggNOG" id="COG0572">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_067202_2_1_4"/>
    <dbReference type="OMA" id="CDERWFV"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016301">
        <property type="term" value="F:kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006083">
        <property type="entry name" value="PRK/URK"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00485">
        <property type="entry name" value="PRK"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="PRK" evidence="1">
        <location>
            <begin position="25"/>
            <end position="207"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF00485"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX33427.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="213" mass="23134" checksum="E594530EE7F7324E" modified="2008-01-15" version="1">MTAILPPEALARAFALARSGPRRLLGLAGPPGAGKSTVCAALLQALGPLAAAVPMDGFHLAQSALERLGRAQRKGAPDTFDSAGYVALLRRLHTPVAGETVYAPEFRRAIEEPIAGAIAIAPGVPLVITEGNYLLMDEQDAPGTHWHAVHALLDEVWYVDMDDRLRIERLTRRHELHGRSPQAARDWVAQVDEPNARRIAATRGRADWVLRWG</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="88" xmlns="http://uniprot.org/uniprot">
    <accession>A9BSD1</accession>
    <name>A9BSD1_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="8">Putative sigma54 specific transcriptional regulator</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="8" type="ordered locus">Daci_1100</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="9" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX33745.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_1100"/>
    <dbReference type="PRIDE" id="A9BSD1"/>
    <dbReference type="EnsemblBacteria" id="ABX33745">
        <property type="protein sequence ID" value="ABX33745"/>
        <property type="gene ID" value="Daci_1100"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_1100"/>
    <dbReference type="eggNOG" id="COG3829">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_000445_8_1_4"/>
    <dbReference type="OMA" id="SPVHEKF"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043565">
        <property type="term" value="F:sequence-specific DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006355">
        <property type="term" value="P:regulation of transcription, DNA-templated"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003593">
        <property type="entry name" value="AAA+_ATPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009057">
        <property type="entry name" value="Homeobox-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002197">
        <property type="entry name" value="HTH_Fis"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035965">
        <property type="entry name" value="PAS-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002078">
        <property type="entry name" value="Sigma_54_int"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025662">
        <property type="entry name" value="Sigma_54_int_dom_ATP-bd_1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025943">
        <property type="entry name" value="Sigma_54_int_dom_ATP-bd_2"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02954">
        <property type="entry name" value="HTH_8"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00158">
        <property type="entry name" value="Sigma54_activat"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00382">
        <property type="entry name" value="AAA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46689">
        <property type="entry name" value="SSF46689"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55785">
        <property type="entry name" value="SSF55785"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00675">
        <property type="entry name" value="SIGMA54_INTERACT_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00676">
        <property type="entry name" value="SIGMA54_INTERACT_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50045">
        <property type="entry name" value="SIGMA54_INTERACT_4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="5" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="1" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4" id="KW-0804">Transcription</keyword>
    <keyword evidence="3" id="KW-0805">Transcription regulation</keyword>
    <feature type="domain" description="Sigma-54 factor interaction" evidence="7">
        <location>
            <begin position="272"/>
            <end position="502"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="6">
        <location>
            <begin position="1"/>
            <end position="29"/>
        </location>
    </feature>
    <feature type="coiled-coil region" evidence="5">
        <location>
            <begin position="239"/>
            <end position="266"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023015"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023163"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="PROSITE" id="PS50045"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="ABX33745.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="586" mass="63272" checksum="26D728E8A3092AB2" modified="2008-01-15" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="53" xmlns="http://uniprot.org/uniprot">
    <accession>A9BSF8</accession>
    <name>A9BSF8_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">GumN family protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_1127</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX33772.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012203058.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_1127"/>
    <dbReference type="PRIDE" id="A9BSF8"/>
    <dbReference type="EnsemblBacteria" id="ABX33772">
        <property type="protein sequence ID" value="ABX33772"/>
        <property type="gene ID" value="Daci_1127"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_1127"/>
    <dbReference type="eggNOG" id="COG3735">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_057525_2_0_4"/>
    <dbReference type="OMA" id="VYLELDM"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002816">
        <property type="entry name" value="TraB/PrgY/GumN_fam"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01963">
        <property type="entry name" value="TraB_PrgY_gumN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="1">
        <location>
            <begin position="1"/>
            <end position="33"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5002732466" evidence="1">
        <location>
            <begin position="34"/>
            <end position="337"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX33772.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="337" mass="36291" checksum="CAE604918D7B7BFF" modified="2008-01-15" version="1">MSRVCAPWWRLAGRSLRAGLAALALSPLAGAFAAPPAADPVTCPPEARMPSPDEIRAMQRKAQDRGLLWRIEHRGRTSWLYGTMHAAKLDWSVPGPTVADALRASDSLALELNILDPAVMKVLFAGMQARPDAPPLRGDLQRRLEEQRRLACAGPELALLRPDAQVISLLSLAGRSEGLDASYGIDFSLAGVALALGKPVLSLETPELQLRELVSDDPARVAETVESGLRQLESGIASQKLGLIARVWADGRIHLLESLPDWCDCMANAAERADYDRMVYGRNPGLAREVARQIRSGRSVFAAVGALHMVGTRGLPALLAAQGFKVQRVEFPAASPP</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="57" xmlns="http://uniprot.org/uniprot">
    <accession>A9BSH2</accession>
    <name>A9BSH2_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">CMP/dCMP deaminase zinc-binding</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_1141</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX33786.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012203072.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_1141"/>
    <dbReference type="PRIDE" id="A9BSH2"/>
    <dbReference type="EnsemblBacteria" id="ABX33786">
        <property type="protein sequence ID" value="ABX33786"/>
        <property type="gene ID" value="Daci_1141"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_1141"/>
    <dbReference type="eggNOG" id="COG0590">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_025810_5_1_4"/>
    <dbReference type="OMA" id="GDHPENP"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003824">
        <property type="term" value="F:catalytic activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002125">
        <property type="entry name" value="CMP_dCMP_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016193">
        <property type="entry name" value="Cytidine_deaminase-like"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00383">
        <property type="entry name" value="dCMP_cyt_deam_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53927">
        <property type="entry name" value="SSF53927"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51747">
        <property type="entry name" value="CYT_DCMP_DEAMINASES_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="CMP/dCMP-type deaminase" evidence="1">
        <location>
            <begin position="20"/>
            <end position="139"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS51747"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX33786.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="174" mass="18591" checksum="3108FBBE4E114255" modified="2008-01-15" version="1">MTPAPTTPPSMTPMTPLTDEQAARQLRRAGAVAGRAMAMGRHPFGALLLAPDGETVLAEQGNIDTVNHAESTLARTAAANYPGAYLAQCTLVTTFEPCAMCAGTIYWAGIGRVLYGAEETALLALTGDHPENPTLSLPCREVFARGQRAVQVIGPVPALHEEMLEPHRGFWQQR</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="53" xmlns="http://uniprot.org/uniprot">
    <accession>A9BSM2</accession>
    <name>A9BSM2_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ordered locus">Daci_1383</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="5" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Periplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the UPF0065 (bug) family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX34027.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_1383"/>
    <dbReference type="PRIDE" id="A9BSM2"/>
    <dbReference type="EnsemblBacteria" id="ABX34027">
        <property type="protein sequence ID" value="ABX34027"/>
        <property type="gene ID" value="Daci_1383"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_1383"/>
    <dbReference type="eggNOG" id="COG3181">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_045683_0_0_4"/>
    <dbReference type="OMA" id="WIRSEHA"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0042597">
        <property type="term" value="C:periplasmic space"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.190.150">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005064">
        <property type="entry name" value="BUG"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR042100">
        <property type="entry name" value="Bug_dom1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR42928">
        <property type="entry name" value="PTHR42928"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03401">
        <property type="entry name" value="TctC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF017082">
        <property type="entry name" value="YflP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="3">
        <location>
            <begin position="1"/>
            <end position="24"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5002733046" evidence="3">
        <location>
            <begin position="25"/>
            <end position="325"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004418"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00006987"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="ABX34027.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="325" mass="34172" checksum="95B2A5FB196D5066" modified="2008-01-15" version="1">MRRRHLLGGAAAALATAFPALALAQGEWPQRPVRLIVPFPPGGGTDATSRLVADRLNLAMGWTMVIDNKPGAGGNIGLDAVAKAAPDGYTIGMGQAANLAINPSLYAKMPFDALKDFTPIASVALQPVVLTVRRDSPFKNLQDFIKAAKARPGTYGIAQAGNGTVGHLAGEMLARRAGIEVLQVPYKGANTALTDLMGGQVDLYFGNTVSVMSQLATGKIRALAVTSAQRVPSLPDVPTVAEQGYPGFEASTWLGLVGPANLPAPIAERIADATMKLLATKEVKEKLAQEGSMATPANGAQFGEWIRSEHAKWGKLIREGKFQIN</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="59" xmlns="http://uniprot.org/uniprot">
    <accession>A9BSN8</accession>
    <name>A9BSN8_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Daci_1399</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="4" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Periplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the UPF0065 (bug) family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX34043.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012203329.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_1399"/>
    <dbReference type="PRIDE" id="A9BSN8"/>
    <dbReference type="EnsemblBacteria" id="ABX34043">
        <property type="protein sequence ID" value="ABX34043"/>
        <property type="gene ID" value="Daci_1399"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_1399"/>
    <dbReference type="eggNOG" id="COG3181">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_045683_0_2_4"/>
    <dbReference type="OMA" id="AGAYMSK"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0042597">
        <property type="term" value="C:periplasmic space"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.190.150">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005064">
        <property type="entry name" value="BUG"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR042100">
        <property type="entry name" value="Bug_dom1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006311">
        <property type="entry name" value="TAT_signal"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR42928">
        <property type="entry name" value="PTHR42928"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03401">
        <property type="entry name" value="TctC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF017082">
        <property type="entry name" value="YflP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51318">
        <property type="entry name" value="TAT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004418"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00006987"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ABX34043.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="339" mass="35989" checksum="C80352CE1E27EA7D" modified="2008-01-15" version="1">MSNQVTRRDILQGLAAIGGTSLLATGATSALAQAGKPAAWPTKPIRVVVPFNAGGATDIIARTIGEALARRVGQPVVIDNRAGAAGILGTDAVVKAPADGHTLLVSLSTSMLINQFLYTKLPYNPQKDIALITQIAAAPVTLVVHPSVPANNMKELLAYVKANKGKLSYGSWGVGSYAHLAGAYMSKTMDADMTHAAYKGEAPMIQELIGGQLQMCFSSALNTKPFIDSGKLKAIGVTGKERMEILPKLPTIHEQGVTDDAYAIYGWVAMGAPAGVPKEIVDQLYGHLREIAKDPKVLERTVGAGFMPLMNSPQAFRENYQRDMPIWKALVDEAGAKLD</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-05-25" version="63" xmlns="http://uniprot.org/uniprot">
    <accession>A9BTL0</accession>
    <name>A9BTL0_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Daci_2340</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="4" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX34978.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012204260.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_2340"/>
    <dbReference type="EnsemblBacteria" id="ABX34978">
        <property type="protein sequence ID" value="ABX34978"/>
        <property type="gene ID" value="Daci_2340"/>
    </dbReference>
    <dbReference type="GeneID" id="60686715"/>
    <dbReference type="KEGG" id="dac:Daci_2340"/>
    <dbReference type="eggNOG" id="COG0697">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_033863_20_1_4"/>
    <dbReference type="OMA" id="NTLTWPV"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000620">
        <property type="entry name" value="EamA_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00892">
        <property type="entry name" value="EamA"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="12"/>
            <end position="32"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="38"/>
            <end position="55"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="67"/>
            <end position="86"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="92"/>
            <end position="114"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="121"/>
            <end position="140"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="146"/>
            <end position="169"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="181"/>
            <end position="201"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="213"/>
            <end position="238"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="250"/>
            <end position="269"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="275"/>
            <end position="294"/>
        </location>
    </feature>
    <feature type="domain" description="EamA" evidence="2">
        <location>
            <begin position="14"/>
            <end position="136"/>
        </location>
    </feature>
    <feature type="domain" description="EamA" evidence="2">
        <location>
            <begin position="150"/>
            <end position="290"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF00892"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ABX34978.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="303" mass="32406" checksum="DAB1C61941AD25CA" modified="2008-01-15" version="1">MTAQHLSRGDWARALLVILIWGTNFVAMKFGLLTLSPMLLSALRFVVASLPFLLFVRPPKSVGWRYLAAYGLVQGVGQFGMLFLGLKLGMPAGMASVVLQTQAFVTLLLAAFLLGEPARLWHWLGLVVSLGGLVAIGSAHGEGDNAMTLAGFLLTVGAACMWAVSNMITRYAARSGPYEPFPFIVWSSIFPIAPLMALAVWTDGADTVVQQLAGIDLTAVASILYLALLATLLGYGLWTRLLQRYAAGTVAPLSLMVPVVGLVSAMLLLGERPTLMQWMGTLAVLAGMVINQFGGRWLAGRAR</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="85" xmlns="http://uniprot.org/uniprot">
    <accession>A9BU41</accession>
    <name>A9BU41_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Transcriptional regulator, AsnC family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ordered locus">Daci_3118</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="6" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX35756.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012204957.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_3118"/>
    <dbReference type="PRIDE" id="A9BU41"/>
    <dbReference type="EnsemblBacteria" id="ABX35756">
        <property type="protein sequence ID" value="ABX35756"/>
        <property type="gene ID" value="Daci_3118"/>
    </dbReference>
    <dbReference type="GeneID" id="60687410"/>
    <dbReference type="KEGG" id="dac:Daci_3118"/>
    <dbReference type="eggNOG" id="COG1522">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_091233_0_0_4"/>
    <dbReference type="OMA" id="AGDENYI"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043565">
        <property type="term" value="F:sequence-specific DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006355">
        <property type="term" value="P:regulation of transcription, DNA-templated"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="CDD" id="cd00090">
        <property type="entry name" value="HTH_ARSR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011991">
        <property type="entry name" value="ArsR-like_HTH"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000485">
        <property type="entry name" value="AsnC-type_HTH_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011008">
        <property type="entry name" value="Dimeric_a/b-barrel"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019888">
        <property type="entry name" value="Tscrpt_reg_AsnC-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019887">
        <property type="entry name" value="Tscrpt_reg_AsnC/Lrp_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036390">
        <property type="entry name" value="WH_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01037">
        <property type="entry name" value="AsnC_trans_reg"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00033">
        <property type="entry name" value="HTHASNC"/>
    </dbReference>
    <dbReference type="SMART" id="SM00344">
        <property type="entry name" value="HTH_ASNC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46785">
        <property type="entry name" value="SSF46785"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54909">
        <property type="entry name" value="SSF54909"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50956">
        <property type="entry name" value="HTH_ASNC_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0804">Transcription</keyword>
    <keyword evidence="1" id="KW-0805">Transcription regulation</keyword>
    <feature type="domain" description="HTH asnC-type" evidence="4">
        <location>
            <begin position="10"/>
            <end position="71"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023015"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023163"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="PROSITE" id="PS50956"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="ABX35756.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="161" mass="18191" checksum="CBC7C1B3AB2F87E3" modified="2008-01-15" version="1">MAAKSENRVLDRTDRKILDILQRDGRISMTELAEQVSLSATPCSERVRRLERDGVITGYHAHLSPEALGKTLLVFVEIKLSSKSGEVFDKVRQELLHVPDVLECFLVSGSFDYLVKARLGGMREYRRLLGDILKKLPVPAESHSYVVMEEVKETLALPVDR</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-01-19" version="71" xmlns="http://uniprot.org/uniprot">
    <accession>A9BU93</accession>
    <name>A9BU93_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">(2Fe-2S)-binding domain protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_3170</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX35808.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012205008.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_3170"/>
    <dbReference type="EnsemblBacteria" id="ABX35808">
        <property type="protein sequence ID" value="ABX35808"/>
        <property type="gene ID" value="Daci_3170"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_3170"/>
    <dbReference type="eggNOG" id="COG2080">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_052511_2_0_4"/>
    <dbReference type="OMA" id="MMIDFLH"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051536">
        <property type="term" value="F:iron-sulfur cluster binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016491">
        <property type="term" value="F:oxidoreductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.10.20.30">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002888">
        <property type="entry name" value="2Fe-2S-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036884">
        <property type="entry name" value="2Fe-2S-bd_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036010">
        <property type="entry name" value="2Fe-2S_ferredoxin-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001041">
        <property type="entry name" value="2Fe-2S_ferredoxin-type"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012675">
        <property type="entry name" value="Beta-grasp_dom_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00111">
        <property type="entry name" value="Fer2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01799">
        <property type="entry name" value="Fer2_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47741">
        <property type="entry name" value="SSF47741"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54292">
        <property type="entry name" value="SSF54292"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51085">
        <property type="entry name" value="2FE2S_FER_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="2Fe-2S ferredoxin-type" evidence="1">
        <location>
            <begin position="6"/>
            <end position="87"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS51085"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX35808.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="195" mass="20802" checksum="BDAD159ADD6AAC78" modified="2008-01-15" version="1">MSLVPRPLSLTVNGQTVGPMDVPEGMPMIDFLHEYLNLTGSRLGCGIGECRACTVIVDGPEGSREMRTCITGAHYFQGRKVRTIEGIADPAGADTAPPSAPGASGQPRKVIAISPVQQKYLEHFSFQCGYCTPGFVIAATVLVERLAKAPIRAADVEQVVGEALQPHLCRCTGYVRYYAAVKDLVLNTPGLTLKG</sequence>
</entry>
<entry dataset="Swiss-Prot" created="2009-07-28" modified="2022-08-03" version="87" xmlns="http://uniprot.org/uniprot">
    <accession>A9BUC4</accession>
    <name>URE1_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Urease subunit alpha</fullName>
            <ecNumber evidence="1">3.5.1.5</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="1">Urea amidohydrolase subunit alpha</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="1" type="primary">ureC</name>
        <name type="ordered locus">Daci_1182</name>
    </gene>
    <organism>
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference key="1">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain>DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>2 H(+) + H2O + urea = CO2 + 2 NH4(+)</text>
            <dbReference type="Rhea" id="RHEA:20557"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:16199"/>
            <dbReference type="ChEBI" id="CHEBI:16526"/>
            <dbReference type="ChEBI" id="CHEBI:28938"/>
            <dbReference type="EC" id="3.5.1.5"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>Ni cation</name>
            <dbReference type="ChEBI" id="CHEBI:25516"/>
        </cofactor>
        <text evidence="1">Binds 2 nickel ions per subunit.</text>
    </comment>
    <comment type="pathway">
        <text evidence="1">Nitrogen metabolism; urea degradation; CO(2) and NH(3) from urea (urease route): step 1/1.</text>
    </comment>
    <comment type="subunit">
        <text evidence="1">Heterotrimer of UreA (gamma), UreB (beta) and UreC (alpha) subunits. Three heterotrimers associate to form the active enzyme.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="PTM">
        <text evidence="1">Carboxylation allows a single lysine to coordinate two nickel ions.</text>
    </comment>
    <comment type="similarity">
        <text evidence="1">Belongs to the metallo-dependent hydrolases superfamily. Urease alpha subunit family.</text>
    </comment>
    <dbReference type="EC" id="3.5.1.5" evidence="1"/>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX33827.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012203113.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A9BUC4"/>
    <dbReference type="SMR" id="A9BUC4"/>
    <dbReference type="STRING" id="398578.Daci_1182"/>
    <dbReference type="PRIDE" id="A9BUC4"/>
    <dbReference type="EnsemblBacteria" id="ABX33827">
        <property type="protein sequence ID" value="ABX33827"/>
        <property type="gene ID" value="Daci_1182"/>
    </dbReference>
    <dbReference type="GeneID" id="60685750"/>
    <dbReference type="KEGG" id="dac:Daci_1182"/>
    <dbReference type="eggNOG" id="COG0804">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_000980_0_0_4"/>
    <dbReference type="OMA" id="GFDSHIH"/>
    <dbReference type="UniPathway" id="UPA00258">
        <property type="reaction ID" value="UER00370"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016151">
        <property type="term" value="F:nickel cation binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009039">
        <property type="term" value="F:urease activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043419">
        <property type="term" value="P:urea catabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniPathway"/>
    </dbReference>
    <dbReference type="CDD" id="cd00375">
        <property type="entry name" value="Urease_alpha"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.30.40.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01953">
        <property type="entry name" value="Urease_alpha"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006680">
        <property type="entry name" value="Amidohydro-rel"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011059">
        <property type="entry name" value="Metal-dep_hydrolase_composite"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR032466">
        <property type="entry name" value="Metal_Hydrolase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011612">
        <property type="entry name" value="Urease_alpha_N_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017950">
        <property type="entry name" value="Urease_AS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005848">
        <property type="entry name" value="Urease_asu"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017951">
        <property type="entry name" value="Urease_asu_c"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029754">
        <property type="entry name" value="Urease_Ni-bd"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01979">
        <property type="entry name" value="Amidohydro_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00449">
        <property type="entry name" value="Urease_alpha"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR01752">
        <property type="entry name" value="UREASE"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51338">
        <property type="entry name" value="SSF51338"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51556">
        <property type="entry name" value="SSF51556"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01792">
        <property type="entry name" value="urease_alph"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01120">
        <property type="entry name" value="UREASE_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00145">
        <property type="entry name" value="UREASE_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51368">
        <property type="entry name" value="UREASE_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword id="KW-0963">Cytoplasm</keyword>
    <keyword id="KW-0378">Hydrolase</keyword>
    <keyword id="KW-0479">Metal-binding</keyword>
    <keyword id="KW-0533">Nickel</keyword>
    <keyword id="KW-1185">Reference proteome</keyword>
    <feature type="chain" id="PRO_1000188871" description="Urease subunit alpha">
        <location>
            <begin position="1"/>
            <end position="567"/>
        </location>
    </feature>
    <feature type="domain" description="Urease" evidence="1">
        <location>
            <begin position="129"/>
            <end position="567"/>
        </location>
    </feature>
    <feature type="active site" description="Proton donor" evidence="1">
        <location>
            <position position="320"/>
        </location>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <position position="134"/>
        </location>
        <ligand>
            <name>Ni(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:49786"/>
            <label>1</label>
        </ligand>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <position position="136"/>
        </location>
        <ligand>
            <name>Ni(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:49786"/>
            <label>1</label>
        </ligand>
    </feature>
    <feature type="binding site" description="via carbamate group" evidence="1">
        <location>
            <position position="217"/>
        </location>
        <ligand>
            <name>Ni(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:49786"/>
            <label>1</label>
        </ligand>
    </feature>
    <feature type="binding site" description="via carbamate group" evidence="1">
        <location>
            <position position="217"/>
        </location>
        <ligand>
            <name>Ni(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:49786"/>
            <label>2</label>
        </ligand>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <position position="219"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <position position="246"/>
        </location>
        <ligand>
            <name>Ni(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:49786"/>
            <label>2</label>
        </ligand>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <position position="272"/>
        </location>
        <ligand>
            <name>Ni(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:49786"/>
            <label>2</label>
        </ligand>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <position position="360"/>
        </location>
        <ligand>
            <name>Ni(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:49786"/>
            <label>1</label>
        </ligand>
    </feature>
    <feature type="modified residue" description="N6-carboxylysine" evidence="1">
        <location>
            <position position="217"/>
        </location>
    </feature>
    <evidence type="ECO:0000255" key="1">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01953"/>
        </source>
    </evidence>
    <sequence length="567" mass="60259" checksum="4D5B1F301148E11D" modified="2008-01-15" version="1"> </sequence>
</entry>
<entry dataset="Swiss-Prot" created="2009-03-24" modified="2022-08-03" version="80" xmlns="http://uniprot.org/uniprot">
    <accession>A9BUK3</accession>
    <name>MRAY_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Phospho-N-acetylmuramoyl-pentapeptide-transferase</fullName>
            <ecNumber evidence="1">2.7.8.13</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="1">UDP-MurNAc-pentapeptide phosphotransferase</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="1" type="primary">mraY</name>
        <name type="ordered locus">Daci_1467</name>
    </gene>
    <organism>
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference key="1">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain>DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="1">Catalyzes the initial step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan: transfers peptidoglycan precursor phospho-MurNAc-pentapeptide from UDP-MurNAc-pentapeptide onto the lipid carrier undecaprenyl phosphate, yielding undecaprenyl-pyrophosphoryl-MurNAc-pentapeptide, known as lipid I.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>di-trans,octa-cis-undecaprenyl phosphate + UDP-N-acetyl-alpha-D-muramoyl-L-alanyl-gamma-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine = di-trans-octa-cis-undecaprenyl diphospho-N-acetyl-alpha-D-muramoyl-L-alanyl-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine + UMP</text>
            <dbReference type="Rhea" id="RHEA:28386"/>
            <dbReference type="ChEBI" id="CHEBI:57865"/>
            <dbReference type="ChEBI" id="CHEBI:60392"/>
            <dbReference type="ChEBI" id="CHEBI:61386"/>
            <dbReference type="ChEBI" id="CHEBI:61387"/>
            <dbReference type="EC" id="2.7.8.13"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </cofactor>
    </comment>
    <comment type="pathway">
        <text evidence="1">Cell wall biogenesis; peptidoglycan biosynthesis.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Cell inner membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="1">Belongs to the glycosyltransferase 4 family. MraY subfamily.</text>
    </comment>
    <dbReference type="EC" id="2.7.8.13" evidence="1"/>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX34111.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012203397.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A9BUK3"/>
    <dbReference type="SMR" id="A9BUK3"/>
    <dbReference type="STRING" id="398578.Daci_1467"/>
    <dbReference type="PRIDE" id="A9BUK3"/>
    <dbReference type="EnsemblBacteria" id="ABX34111">
        <property type="protein sequence ID" value="ABX34111"/>
        <property type="gene ID" value="Daci_1467"/>
    </dbReference>
    <dbReference type="GeneID" id="60686008"/>
    <dbReference type="KEGG" id="dac:Daci_1467"/>
    <dbReference type="eggNOG" id="COG0472">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_023982_0_0_4"/>
    <dbReference type="OMA" id="LMSPLHH"/>
    <dbReference type="UniPathway" id="UPA00219"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008963">
        <property type="term" value="F:phospho-N-acetylmuramoyl-pentapeptide-transferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051992">
        <property type="term" value="F:UDP-N-acetylmuramoyl-L-alanyl-D-glutamyl-meso-2,6-diaminopimelyl-D-alanyl-D-alanine:undecaprenyl-phosphate transferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0007049">
        <property type="term" value="P:cell cycle"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051301">
        <property type="term" value="P:cell division"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0071555">
        <property type="term" value="P:cell wall organization"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009252">
        <property type="term" value="P:peptidoglycan biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008360">
        <property type="term" value="P:regulation of cell shape"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd06852">
        <property type="entry name" value="GT_MraY"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00038">
        <property type="entry name" value="MraY"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000715">
        <property type="entry name" value="Glycosyl_transferase_4"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003524">
        <property type="entry name" value="PNAcMuramoyl-5peptid_Trfase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018480">
        <property type="entry name" value="PNAcMuramoyl-5peptid_Trfase_CS"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR22926">
        <property type="entry name" value="PTHR22926"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00953">
        <property type="entry name" value="Glycos_transf_4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00445">
        <property type="entry name" value="mraY"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01347">
        <property type="entry name" value="MRAY_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01348">
        <property type="entry name" value="MRAY_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword id="KW-0131">Cell cycle</keyword>
    <keyword id="KW-0132">Cell division</keyword>
    <keyword id="KW-0997">Cell inner membrane</keyword>
    <keyword id="KW-1003">Cell membrane</keyword>
    <keyword id="KW-0133">Cell shape</keyword>
    <keyword id="KW-0961">Cell wall biogenesis/degradation</keyword>
    <keyword id="KW-0460">Magnesium</keyword>
    <keyword id="KW-0472">Membrane</keyword>
    <keyword id="KW-0479">Metal-binding</keyword>
    <keyword id="KW-0573">Peptidoglycan synthesis</keyword>
    <keyword id="KW-1185">Reference proteome</keyword>
    <keyword id="KW-0808">Transferase</keyword>
    <keyword id="KW-0812">Transmembrane</keyword>
    <keyword id="KW-1133">Transmembrane helix</keyword>
    <feature type="chain" id="PRO_1000090618" description="Phospho-N-acetylmuramoyl-pentapeptide-transferase">
        <location>
            <begin position="1"/>
            <end position="392"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="24"/>
            <end position="44"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="76"/>
            <end position="96"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="100"/>
            <end position="120"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="137"/>
            <end position="157"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="170"/>
            <end position="190"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="193"/>
            <end position="213"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="225"/>
            <end position="245"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="262"/>
            <end position="282"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="289"/>
            <end position="309"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="314"/>
            <end position="334"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="369"/>
            <end position="389"/>
        </location>
    </feature>
    <evidence type="ECO:0000255" key="1">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00038"/>
        </source>
    </evidence>
    <sequence length="392" mass="42949" checksum="677CB2F75B8EF999" modified="2008-01-15" version="1">MLLMLSQWLQGLSPEFGFLRVFQYLTMRAVMAALTALVIGLLAGPRLIRMLTSLKIGQPVRGYGMETHLAKSGTPTMGGALILLSIAVSTLLWFDLSNRFVWIVLLVTLGFGTIGWVDDWRKVVNKDPEGMRSGEKYFWQSVIGLLAALYLVFCISENSNAQVFELFVTWVQSGFALDLPPKAGLLVPFFKEVSYPLGVLGFVIMTYLVIVGASNAVNLTDGLDGLAIMPVIMVGSALGIFAYVTGNAGYAKYLLFPHIPGSGELLVYCAAMAGAGLAFLWFNAHPAQVFMGDVGALALGASLGTIAVIVRQEIVLAIMGGIFVVEALSVMLQVTWFKFTKKRYGQGRRLLKMAPLHHHFEKSGWKETQVVIRFWIITMLLCLLGLSTLKLR</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="58" xmlns="http://uniprot.org/uniprot">
    <accession>A9BUL5</accession>
    <name>A9BUL5_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Alpha/beta hydrolase fold</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Daci_1479</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="4" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX34123.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_1479"/>
    <dbReference type="PRIDE" id="A9BUL5"/>
    <dbReference type="EnsemblBacteria" id="ABX34123">
        <property type="protein sequence ID" value="ABX34123"/>
        <property type="gene ID" value="Daci_1479"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_1479"/>
    <dbReference type="eggNOG" id="COG2267">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_086013_0_0_4"/>
    <dbReference type="OMA" id="NRRFWYS"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016787">
        <property type="term" value="F:hydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.1820">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029058">
        <property type="entry name" value="AB_hydrolase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR022742">
        <property type="entry name" value="Hydrolase_4"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12146">
        <property type="entry name" value="Hydrolase_4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53474">
        <property type="entry name" value="SSF53474"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="121"/>
            <end position="148"/>
        </location>
    </feature>
    <feature type="domain" description="Hydrolase_4" evidence="2">
        <location>
            <begin position="26"/>
            <end position="239"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF12146"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ABX34123.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="309" mass="34028" checksum="8AD2A495CAB23277" modified="2008-01-15" version="1">MQKIYVPTRDGHVIVLTRIGPSEGPVVAVTHGTFSNVTSCKRLGRFLALQGYGVWLFDWRGHGLNPPTTHDYDLETVAEEDIESALGEIHRQEEGRRLTLIGHSGGGIAAAIWAARRPDRAHAYLAGLVLLAAQVTHAAATFASWAAIKGYRAWIARRQWLTASGMVGPERESARLMRQWCYWNLQRKFVGYDGMDYLRRLTEVRIPVLALAGSADRVIAPWQGCEALARAFGGKDIEFLLCGKATCFQEDYSHSRLLMAGNAQSDVYPRIAQWMKLRIGAASSLEPAHGLAGDGAQCSEAPQYTLPPL</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="54" xmlns="http://uniprot.org/uniprot">
    <accession>A9BUX8</accession>
    <name>A9BUX8_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ordered locus">Daci_1798</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="5" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Periplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the UPF0065 (bug) family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX34440.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012203725.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_1798"/>
    <dbReference type="PRIDE" id="A9BUX8"/>
    <dbReference type="EnsemblBacteria" id="ABX34440">
        <property type="protein sequence ID" value="ABX34440"/>
        <property type="gene ID" value="Daci_1798"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_1798"/>
    <dbReference type="eggNOG" id="COG3181">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_045683_0_0_4"/>
    <dbReference type="OMA" id="TWPTLAP"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0042597">
        <property type="term" value="C:periplasmic space"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.190.150">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005064">
        <property type="entry name" value="BUG"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR042100">
        <property type="entry name" value="Bug_dom1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR42928">
        <property type="entry name" value="PTHR42928"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03401">
        <property type="entry name" value="TctC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF017082">
        <property type="entry name" value="YflP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="3">
        <location>
            <begin position="1"/>
            <end position="23"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5002732546" evidence="3">
        <location>
            <begin position="24"/>
            <end position="329"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004418"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00006987"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="ABX34440.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="329" mass="33945" checksum="1385D2A8962240A6" modified="2008-01-15" version="1">MKAPTLLGAAALLAAAACQSALAQDAAAQQQLAAKPFTIVAPFPPGGPVDALARLLSTGLAERYKQTSVVENKPGANGNIGIDMVKRAAPDGHTLLVVPQGNLTINPTLLARPGYSVEADFAPVASLAKAANVIAVHPGVPAKTVQELVALSKARPATISYASPGVGSSLHLAGELFKQQTGADILHVAYKGTAPGLNDVLGGTVPMIVGNVPALLPHVQSGKLRALAVTDPARSKYLPDVPTLAQAGVPGIAISSWYGVMAPRKTPPAVLKQLEKDIQEIFNTPAVVRQLDLQGIEPWVVTGSAFGELIRKETATWVPVIKAANVTPQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="90" xmlns="http://uniprot.org/uniprot">
    <accession>A9BUZ8</accession>
    <name>A9BUZ8_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="2 3">Diaminopimelate decarboxylase</fullName>
            <shortName evidence="2">DAP decarboxylase</shortName>
            <shortName evidence="2">DAPDC</shortName>
            <ecNumber evidence="2 3">4.1.1.20</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="primary">lysA</name>
        <name evidence="6" type="ordered locus">Daci_1818</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="7" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="2">Specifically catalyzes the decarboxylation of meso-diaminopimelate (meso-DAP) to L-lysine.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="2 3">
            <text>H(+) + meso-2,6-diaminoheptanedioate = CO2 + L-lysine</text>
            <dbReference type="Rhea" id="RHEA:15101"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:16526"/>
            <dbReference type="ChEBI" id="CHEBI:32551"/>
            <dbReference type="ChEBI" id="CHEBI:57791"/>
            <dbReference type="EC" id="4.1.1.20"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="1 2 3">
            <name>pyridoxal 5'-phosphate</name>
            <dbReference type="ChEBI" id="CHEBI:597326"/>
        </cofactor>
    </comment>
    <comment type="pathway">
        <text evidence="2 3">Amino-acid biosynthesis; L-lysine biosynthesis via DAP pathway; L-lysine from DL-2,6-diaminopimelate: step 1/1.</text>
    </comment>
    <comment type="subunit">
        <text evidence="2">Homodimer.</text>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the Orn/Lys/Arg decarboxylase class-II family. LysA subfamily.</text>
    </comment>
    <dbReference type="EC" id="4.1.1.20" evidence="2 3"/>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX34460.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_1818"/>
    <dbReference type="PRIDE" id="A9BUZ8"/>
    <dbReference type="EnsemblBacteria" id="ABX34460">
        <property type="protein sequence ID" value="ABX34460"/>
        <property type="gene ID" value="Daci_1818"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_1818"/>
    <dbReference type="eggNOG" id="COG0019">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_026444_0_2_4"/>
    <dbReference type="OMA" id="HGNAKSP"/>
    <dbReference type="UniPathway" id="UPA00034">
        <property type="reaction ID" value="UER00027"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008836">
        <property type="term" value="F:diaminopimelate decarboxylase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030170">
        <property type="term" value="F:pyridoxal phosphate binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009089">
        <property type="term" value="P:lysine biosynthetic process via diaminopimelate"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd06828">
        <property type="entry name" value="PLPDE_III_DapDC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.37.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.20.20.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_02120">
        <property type="entry name" value="LysA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009006">
        <property type="entry name" value="Ala_racemase/Decarboxylase_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002986">
        <property type="entry name" value="DAP_deCOOHase_LysA"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR022643">
        <property type="entry name" value="De-COase2_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR022657">
        <property type="entry name" value="De-COase2_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR022644">
        <property type="entry name" value="De-COase2_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR022653">
        <property type="entry name" value="De-COase2_pyr-phos_BS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000183">
        <property type="entry name" value="Orn/DAP/Arg_de-COase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029066">
        <property type="entry name" value="PLP-binding_barrel"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02784">
        <property type="entry name" value="Orn_Arg_deC_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00278">
        <property type="entry name" value="Orn_DAP_Arg_deC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR01181">
        <property type="entry name" value="DAPDCRBXLASE"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR01179">
        <property type="entry name" value="ODADCRBXLASE"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50621">
        <property type="entry name" value="SSF50621"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51419">
        <property type="entry name" value="SSF51419"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01048">
        <property type="entry name" value="lysA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00878">
        <property type="entry name" value="ODR_DC_2_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00879">
        <property type="entry name" value="ODR_DC_2_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2" id="KW-0028">Amino-acid biosynthesis</keyword>
    <keyword evidence="2 3" id="KW-0210">Decarboxylase</keyword>
    <keyword evidence="2 3 6" id="KW-0456">Lyase</keyword>
    <keyword evidence="2 3" id="KW-0457">Lysine biosynthesis</keyword>
    <keyword evidence="2" id="KW-0663">Pyridoxal phosphate</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Orn_DAP_Arg_deC" evidence="4">
        <location>
            <begin position="33"/>
            <end position="382"/>
        </location>
    </feature>
    <feature type="domain" description="Orn_Arg_deC_N" evidence="5">
        <location>
            <begin position="46"/>
            <end position="284"/>
        </location>
    </feature>
    <feature type="region of interest" description="Pyridoxal phosphate binding" evidence="2">
        <location>
            <begin position="277"/>
            <end position="280"/>
        </location>
    </feature>
    <feature type="binding site" evidence="2">
        <location>
            <position position="236"/>
        </location>
        <ligand>
            <name>pyridoxal 5'-phosphate</name>
            <dbReference type="ChEBI" id="CHEBI:597326"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="2">
        <location>
            <position position="280"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="2">
        <location>
            <position position="316"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="2">
        <location>
            <position position="320"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="2">
        <location>
            <position position="349"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="2">
        <location>
            <position position="384"/>
        </location>
    </feature>
    <feature type="modified residue" description="N6-(pyridoxal phosphate)lysine" evidence="2">
        <location>
            <position position="57"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001933"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_02120"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="RuleBase" id="RU003738"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="Pfam" id="PF00278"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="Pfam" id="PF02784"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="ABX34460.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="431" mass="45962" checksum="38A2CD003B966C64" modified="2008-01-15" version="1">MRGSSPERDPMSNPFSPAQLWALADQHGTPLWVYDAATIRARIAQLKAFDTIRFAQKACSNIHILRLMREQGVKVDAVSRGEILRALAAGYAAGHGDDLHSDIVFTADVMDEATLACVAEHKVPVNAGSIDMLHQLAQASPGHPVWLRINPGFGHGHSNKTNTGGEHSKHGIWHSDLLAALQAIRDGGLKLAGLHMHIGSGVDYGHLQQVCGAMVELVRATRQAGHDLQAISAGGGLSIPYRDGDATIDTAHYHGLWDAARKDAEAIVGHALGLEIEPGRFLVAESGVLLGQVRATKNAGSNHFVLVDTGFNELMRPSMYGSWHGMEVLRRDGQAMPLRDAVVAGPLCESGDVFTQGDGGVVLPRALAGASVGDLLVIHDTGAYGSSMSSNYNTRPLAAEVLVDGDSTRLIRRRQTVEELLGLELGLELGL</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="37" xmlns="http://uniprot.org/uniprot">
    <accession>A9BV42</accession>
    <name>A9BV42_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_2066</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX34706.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012203989.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_2066"/>
    <dbReference type="PRIDE" id="A9BV42"/>
    <dbReference type="EnsemblBacteria" id="ABX34706">
        <property type="protein sequence ID" value="ABX34706"/>
        <property type="gene ID" value="Daci_2066"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_2066"/>
    <dbReference type="eggNOG" id="ENOG502ZEJ6">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_1774351_0_0_4"/>
    <dbReference type="OMA" id="PRREIDI"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR022053">
        <property type="entry name" value="DUF3613"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12266">
        <property type="entry name" value="DUF3613"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="1">
        <location>
            <begin position="1"/>
            <end position="40"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5002736081" evidence="1">
        <location>
            <begin position="41"/>
            <end position="146"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX34706.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="146" mass="15886" checksum="F468E5D5856297FB" modified="2008-01-15" version="1">MPDTYRMAPPRRTAVANALAPWLLAAGLALLPAAALHAQAFGEVQSPPEQVDARPHVFAEPSTDSILVGYTLYTNPDGTVMYLPRREIDIGGGTLRLLEMQHSQPGQRARPIAGEQARRSYARYLKSFETEIPALYKTGVEAGGKN</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="53" xmlns="http://uniprot.org/uniprot">
    <accession>A9BV79</accession>
    <name>A9BV79_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Replication initiation factor</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_2103</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the plasmid replication initiation factor family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX34743.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012204026.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_2103"/>
    <dbReference type="PRIDE" id="A9BV79"/>
    <dbReference type="EnsemblBacteria" id="ABX34743">
        <property type="protein sequence ID" value="ABX34743"/>
        <property type="gene ID" value="Daci_2103"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_2103"/>
    <dbReference type="eggNOG" id="COG2946">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_751690_0_0_4"/>
    <dbReference type="OMA" id="EGCTHAR"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003916">
        <property type="term" value="F:DNA topoisomerase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003743">
        <property type="term" value="F:translation initiation factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006270">
        <property type="term" value="P:DNA replication initiation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003491">
        <property type="entry name" value="Rep_trans"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02486">
        <property type="entry name" value="Rep_trans"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2" id="KW-0396">Initiation factor</keyword>
    <keyword evidence="2" id="KW-0648">Protein biosynthesis</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00008374"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX34743.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="368" mass="41453" checksum="11374F4740066674" modified="2008-01-15" version="1">MNNEEKLVIEGGRVKLLCERRQLEAKSQNGIIVDYLRFTVKRDLIPDTKRIPRESEDRDLVKYYALIFANLLGFELGIERPGRDYYEHTYTVDNENGHEVASVSAGGESQRGTICFTLKGEGCTHARPGWEKRVHDYFSDMVPTITRIDAAKDFFAGEVTIEEVVGLYKDHKFSYRKRMPKYTTHGAWELGSTVDDIPLHGHSRTFQVGKRESGKLARFYEKDHQYGNFAGSWLRAELELRNAGRVIPWDAVINAAEYYAGGYEALKLLCDRDAGTVIPTSVKAGEASADKFVRWIVRTVAPSLAQITKIMPDEDWLHGIVLDQAHRKVPRSLRGLSLQSMSHGVTEALSKFTQFMNPAAPAGAGLLQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-01-19" version="64" xmlns="http://uniprot.org/uniprot">
    <accession>A9BVL6</accession>
    <name>A9BVL6_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="1">L-carnitine dehydratase/bile acid-inducible protein F</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Daci_2445</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="2" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX35083.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012204365.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_2445"/>
    <dbReference type="EnsemblBacteria" id="ABX35083">
        <property type="protein sequence ID" value="ABX35083"/>
        <property type="gene ID" value="Daci_2445"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_2445"/>
    <dbReference type="eggNOG" id="COG1804">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_033975_0_0_4"/>
    <dbReference type="OMA" id="FKIGTME"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003824">
        <property type="term" value="F:catalytic activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.1540.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.10540">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003673">
        <property type="entry name" value="CoA-Trfase_fam_III"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR044855">
        <property type="entry name" value="CoA-Trfase_III_dom3_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023606">
        <property type="entry name" value="CoA-Trfase_III_dom_1_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02515">
        <property type="entry name" value="CoA_transf_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF89796">
        <property type="entry name" value="SSF89796"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ABX35083.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="371" mass="39825" checksum="321554F2CCC91855" modified="2008-01-15" version="1">MSRANGALQGIRVLDLSRILGGPLCGQILGDHGADVLKVEPPQGDDTRAWGPPFQDGVSSYYRGLNRNKRLQFLDLSQSEGQQAVLALMEQADVVVENFKIGTMEKWGIGWEQVRERFPRLIWCRVSGFGADGPLGAWPGYDAAIQAMTGLMSVNGEAGGDPLRVGLPVVDMVTGMNGVIGVLLALQERQRSGLGQLVDVSLYDSGISLLHPHAGNWFMSGRTPGRSGNAHPNIYPYDSFATGTTPVFLAVGNDRQFRLLCEHLGCPQLVADERFATAGQRSHHRDALKPLLEQALQASDGPALADALMAIGVPAAPVLGVDAALNHPHTLHREMVVEMEGGYRGLGAPVKLSRTPASYRHAPLAEGDSFE</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="56" xmlns="http://uniprot.org/uniprot">
    <accession>A9BVW9</accession>
    <name>A9BVW9_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Thioesterase superfamily protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_2844</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX35482.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012204692.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_2844"/>
    <dbReference type="PRIDE" id="A9BVW9"/>
    <dbReference type="EnsemblBacteria" id="ABX35482">
        <property type="protein sequence ID" value="ABX35482"/>
        <property type="gene ID" value="Daci_2844"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_2844"/>
    <dbReference type="eggNOG" id="COG2050">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_089876_3_0_4"/>
    <dbReference type="OMA" id="RTITHYT"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029069">
        <property type="entry name" value="HotDog_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003736">
        <property type="entry name" value="PAAI_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006683">
        <property type="entry name" value="Thioestr_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03061">
        <property type="entry name" value="4HBT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54637">
        <property type="entry name" value="SSF54637"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00369">
        <property type="entry name" value="unchar_dom_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="4HBT" evidence="1">
        <location>
            <begin position="67"/>
            <end position="144"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF03061"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX35482.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="161" mass="17761" checksum="CBFA83460D37E4D7" modified="2008-01-15" version="1">MHLPSTYLPVLDYLQRQIEGRLAADEATHMRYPTAISQMLGFRIVAVGEAMAVVEFDADAQRHGNQQGTVHGGMLCELADAAIGTAHSTLMEPGQSFTSIDLKAAFLRPVWRSRLCARAWAEHRGRTISHYRCEIERDDGKTVASIASAVMTLRGEHAQGR</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="36" xmlns="http://uniprot.org/uniprot">
    <accession>A9BW84</accession>
    <name>A9BW84_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Daci_3262</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="2" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX35900.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012205100.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_3262"/>
    <dbReference type="PRIDE" id="A9BW84"/>
    <dbReference type="EnsemblBacteria" id="ABX35900">
        <property type="protein sequence ID" value="ABX35900"/>
        <property type="gene ID" value="Daci_3262"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_3262"/>
    <dbReference type="HOGENOM" id="CLU_1575900_0_0_4"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ABX35900.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="169" mass="18012" checksum="6B5CB1282B085210" modified="2008-01-15" version="1">MISALYTHLAAAGAALAIGASGAWWTQGQRYGLQLEQLRHQQTTAELKATHQAVTDMAGFQKGLTDALTTFQATGQRNQAAQQDLDRSLRELRSATAGMRGDFAGLPERIAGAAQPALAQYASTCTAVLQELADRGERMAERGADIARAADGHAADSALMRDAWPKMSR</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="84" xmlns="http://uniprot.org/uniprot">
    <accession>A9BWA1</accession>
    <name>A9BWA1_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Selenocysteine-specific elongation factor</fullName>
        </recommendedName>
        <alternativeName>
            <fullName evidence="5">SelB translation factor</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="7" type="ordered locus">Daci_3485</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="8" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="4">Translation factor necessary for the incorporation of selenocysteine into proteins. It probably replaces EF-Tu for the insertion of selenocysteine directed by the UGA codon. SelB binds GTP and GDP.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX36121.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012205321.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_3485"/>
    <dbReference type="PRIDE" id="A9BWA1"/>
    <dbReference type="EnsemblBacteria" id="ABX36121">
        <property type="protein sequence ID" value="ABX36121"/>
        <property type="gene ID" value="Daci_3485"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_3485"/>
    <dbReference type="eggNOG" id="COG3276">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_023030_2_0_4"/>
    <dbReference type="OMA" id="YAIDRVF"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005525">
        <property type="term" value="F:GTP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003924">
        <property type="term" value="F:GTPase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003723">
        <property type="term" value="F:RNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003746">
        <property type="term" value="F:translation elongation factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0001514">
        <property type="term" value="P:selenocysteine incorporation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004161">
        <property type="entry name" value="EFTu-like_2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015190">
        <property type="entry name" value="Elong_fac_SelB-wing-hlx_typ-2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015191">
        <property type="entry name" value="Elong_fac_SelB-wing-hlx_typ-3"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR031157">
        <property type="entry name" value="G_TR_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000795">
        <property type="entry name" value="T_Tr_GTP-bd_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009000">
        <property type="entry name" value="Transl_B-barrel_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009001">
        <property type="entry name" value="Transl_elong_EF1A/Init_IF2_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004535">
        <property type="entry name" value="Transl_elong_SelB"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036390">
        <property type="entry name" value="WH_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00009">
        <property type="entry name" value="GTP_EFTU"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03144">
        <property type="entry name" value="GTP_EFTU_D2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF09106">
        <property type="entry name" value="SelB-wing_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF09107">
        <property type="entry name" value="SelB-wing_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00315">
        <property type="entry name" value="ELONGATNFCT"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46785">
        <property type="entry name" value="SSF46785"/>
        <property type="match status" value="3"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50447">
        <property type="entry name" value="SSF50447"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50465">
        <property type="entry name" value="SSF50465"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00475">
        <property type="entry name" value="selB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00301">
        <property type="entry name" value="G_TR_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51722">
        <property type="entry name" value="G_TR_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="7" id="KW-0251">Elongation factor</keyword>
    <keyword evidence="3" id="KW-0342">GTP-binding</keyword>
    <keyword evidence="2" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="7" id="KW-0648">Protein biosynthesis</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Tr-type G" evidence="6">
        <location>
            <begin position="1"/>
            <end position="172"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00015953"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023134"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00025526"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00031615"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="PROSITE" id="PS51722"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="ABX36121.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="643" mass="68996" checksum="92535939ADBA029C" modified="2008-01-15" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="77" xmlns="http://uniprot.org/uniprot">
    <accession>A9BWQ2</accession>
    <name>A9BWQ2_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="10">TonB-dependent receptor</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="10" type="ordered locus">Daci_3948</name>
    </gene>
    <organism evidence="10 11">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="10 11" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="11">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="11" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="11">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="6">Cell outer membrane</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="1 6">Belongs to the TonB-dependent receptor family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX36579.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012205773.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_3948"/>
    <dbReference type="PRIDE" id="A9BWQ2"/>
    <dbReference type="EnsemblBacteria" id="ABX36579">
        <property type="protein sequence ID" value="ABX36579"/>
        <property type="gene ID" value="Daci_3948"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_3948"/>
    <dbReference type="eggNOG" id="COG4206">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_008287_10_1_4"/>
    <dbReference type="OMA" id="QWGADHA"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009279">
        <property type="term" value="C:cell outer membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.170.130.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.170.20">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR039426">
        <property type="entry name" value="BtuB-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012910">
        <property type="entry name" value="Plug_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037066">
        <property type="entry name" value="Plug_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000531">
        <property type="entry name" value="TonB-dep_rcpt_b-brl"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036942">
        <property type="entry name" value="TonB_rcpt_b-brl_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30069">
        <property type="entry name" value="PTHR30069"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07715">
        <property type="entry name" value="Plug"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00593">
        <property type="entry name" value="TonB_dep_Rec"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-0998">Cell outer membrane</keyword>
    <keyword evidence="3 6" id="KW-0472">Membrane</keyword>
    <keyword evidence="4 10" id="KW-0675">Receptor</keyword>
    <keyword evidence="11" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 6" id="KW-0798">TonB box</keyword>
    <feature type="domain" description="Plug" evidence="9">
        <location>
            <begin position="90"/>
            <end position="193"/>
        </location>
    </feature>
    <feature type="domain" description="TonB_dep_Rec" evidence="8">
        <location>
            <begin position="292"/>
            <end position="728"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="7">
        <location>
            <begin position="47"/>
            <end position="69"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="7">
        <location>
            <begin position="326"/>
            <end position="346"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00009810"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023077"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023170"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023237"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="RuleBase" id="RU003357"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="Pfam" id="PF00593"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="9">
        <source>
            <dbReference type="Pfam" id="PF07715"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="EMBL" id="ABX36579.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="730" mass="78252" checksum="4DECA888774AFAB7" modified="2008-01-15" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="88" xmlns="http://uniprot.org/uniprot">
    <accession>A9BWT3</accession>
    <name>A9BWT3_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="7">Acetyltransferase component of pyruvate dehydrogenase complex</fullName>
            <ecNumber evidence="7">2.3.1.12</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="10" type="ordered locus">Daci_3979</name>
    </gene>
    <organism evidence="10 11">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="10 11" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="11">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="11" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="11">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="6">The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2). It contains multiple copies of three enzymatic components: pyruvate dehydrogenase (E1), dihydrolipoamide acetyltransferase (E2) and lipoamide dehydrogenase (E3).</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1 7">
            <text>(R)-N(6)-dihydrolipoyl-L-lysyl-[protein] + acetyl-CoA = (R)-N(6)-(S(8)-acetyldihydrolipoyl)-L-lysyl-[protein] + CoA</text>
            <dbReference type="Rhea" id="RHEA:17017"/>
            <dbReference type="Rhea" id="RHEA-COMP:10475"/>
            <dbReference type="Rhea" id="RHEA-COMP:10478"/>
            <dbReference type="ChEBI" id="CHEBI:57287"/>
            <dbReference type="ChEBI" id="CHEBI:57288"/>
            <dbReference type="ChEBI" id="CHEBI:83100"/>
            <dbReference type="ChEBI" id="CHEBI:83111"/>
            <dbReference type="EC" id="2.3.1.12"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="7">
            <name>(R)-lipoate</name>
            <dbReference type="ChEBI" id="CHEBI:83088"/>
        </cofactor>
        <text evidence="7">Binds 2 lipoyl cofactors covalently.</text>
    </comment>
    <comment type="subunit">
        <text evidence="3 7">Forms a 24-polypeptide structural core with octahedral symmetry.</text>
    </comment>
    <comment type="similarity">
        <text evidence="2 7">Belongs to the 2-oxoacid dehydrogenase family.</text>
    </comment>
    <dbReference type="EC" id="2.3.1.12" evidence="7"/>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX36610.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012205804.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_3979"/>
    <dbReference type="PRIDE" id="A9BWT3"/>
    <dbReference type="EnsemblBacteria" id="ABX36610">
        <property type="protein sequence ID" value="ABX36610"/>
        <property type="gene ID" value="Daci_3979"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_3979"/>
    <dbReference type="eggNOG" id="COG0508">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_016733_10_0_4"/>
    <dbReference type="OMA" id="TMEFESF"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0045254">
        <property type="term" value="C:pyruvate dehydrogenase complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004742">
        <property type="term" value="F:dihydrolipoyllysine-residue acetyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006096">
        <property type="term" value="P:glycolytic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.559.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="4.10.320.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003016">
        <property type="entry name" value="2-oxoA_DH_lipoyl-BS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001078">
        <property type="entry name" value="2-oxoacid_DH_actylTfrase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006256">
        <property type="entry name" value="AcTrfase_Pyrv_DH_cplx"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000089">
        <property type="entry name" value="Biotin_lipoyl"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023213">
        <property type="entry name" value="CAT-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036625">
        <property type="entry name" value="E3-bd_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004167">
        <property type="entry name" value="PSBD"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011053">
        <property type="entry name" value="Single_hybrid_motif"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43178:SF2">
        <property type="entry name" value="PTHR43178:SF2"/>
        <property type="match status" value="3"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00198">
        <property type="entry name" value="2-oxoacid_dh"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00364">
        <property type="entry name" value="Biotin_lipoyl"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02817">
        <property type="entry name" value="E3_binding"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47005">
        <property type="entry name" value="SSF47005"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51230">
        <property type="entry name" value="SSF51230"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01348">
        <property type="entry name" value="PDHac_trf_long"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50968">
        <property type="entry name" value="BIOTINYL_LIPOYL"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00189">
        <property type="entry name" value="LIPOYL"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51826">
        <property type="entry name" value="PSBD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="7 10" id="KW-0012">Acyltransferase</keyword>
    <keyword evidence="5 7" id="KW-0324">Glycolysis</keyword>
    <keyword evidence="4 7" id="KW-0450">Lipoyl</keyword>
    <keyword evidence="10" id="KW-0670">Pyruvate</keyword>
    <keyword evidence="11" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="7 10" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Lipoyl-binding" evidence="8">
        <location>
            <begin position="3"/>
            <end position="77"/>
        </location>
    </feature>
    <feature type="domain" description="Lipoyl-binding" evidence="8">
        <location>
            <begin position="122"/>
            <end position="196"/>
        </location>
    </feature>
    <feature type="domain" description="Peripheral subunit-binding (PSBD)" evidence="9">
        <location>
            <begin position="256"/>
            <end position="293"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00000925"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00007317"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00011484"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022823"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023152"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00025211"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="RuleBase" id="RU361137"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="PROSITE" id="PS50968"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="9">
        <source>
            <dbReference type="PROSITE" id="PS51826"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="EMBL" id="ABX36610.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="563" mass="57467" checksum="B2D0C8FA2155BEA0" modified="2008-01-15" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="87" xmlns="http://uniprot.org/uniprot">
    <accession>A9BXG0</accession>
    <name>A9BXG0_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="5 6">Glutamine-dependent NAD(+) synthetase</fullName>
            <ecNumber evidence="5 6">6.3.5.1</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="5 6">NAD(+) synthase [glutamine-hydrolyzing]</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="5" type="primary">nadE</name>
        <name evidence="9" type="ordered locus">Daci_5607</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="9 10" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="10" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="5">Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="5 6">
            <text>ATP + deamido-NAD(+) + H2O + L-glutamine = AMP + diphosphate + H(+) + L-glutamate + NAD(+)</text>
            <dbReference type="Rhea" id="RHEA:24384"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:29985"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:33019"/>
            <dbReference type="ChEBI" id="CHEBI:57540"/>
            <dbReference type="ChEBI" id="CHEBI:58359"/>
            <dbReference type="ChEBI" id="CHEBI:58437"/>
            <dbReference type="ChEBI" id="CHEBI:456215"/>
            <dbReference type="EC" id="6.3.5.1"/>
        </reaction>
    </comment>
    <comment type="pathway">
        <text evidence="1 5 6">Cofactor biosynthesis; NAD(+) biosynthesis; NAD(+) from deamido-NAD(+) (L-Gln route): step 1/1.</text>
    </comment>
    <comment type="similarity">
        <text evidence="7">Belongs to the NAD synthetase family.</text>
    </comment>
    <comment type="similarity">
        <text evidence="2 5 6">In the C-terminal section; belongs to the NAD synthetase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="5">Lacks conserved residue(s) required for the propagation of feature annotation.</text>
    </comment>
    <dbReference type="EC" id="6.3.5.1" evidence="5 6"/>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX38236.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012207405.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_5607"/>
    <dbReference type="PRIDE" id="A9BXG0"/>
    <dbReference type="EnsemblBacteria" id="ABX38236">
        <property type="protein sequence ID" value="ABX38236"/>
        <property type="gene ID" value="Daci_5607"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_5607"/>
    <dbReference type="eggNOG" id="COG0171">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="eggNOG" id="COG0388">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_022313_2_0_4"/>
    <dbReference type="OMA" id="CEDGWND"/>
    <dbReference type="UniPathway" id="UPA00253">
        <property type="reaction ID" value="UER00334"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004359">
        <property type="term" value="F:glutaminase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003952">
        <property type="term" value="F:NAD+ synthase (glutamine-hydrolyzing) activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008795">
        <property type="term" value="F:NAD+ synthase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009435">
        <property type="term" value="P:NAD biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd00553">
        <property type="entry name" value="NAD_synthase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.620">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.60.110.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_02090">
        <property type="entry name" value="NadE_glutamine_dep"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003010">
        <property type="entry name" value="C-N_Hydrolase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036526">
        <property type="entry name" value="C-N_Hydrolase_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014445">
        <property type="entry name" value="Gln-dep_NAD_synthase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR022310">
        <property type="entry name" value="NAD/GMP_synthase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003694">
        <property type="entry name" value="NAD_synthase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014729">
        <property type="entry name" value="Rossmann-like_a/b/a_fold"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR23090">
        <property type="entry name" value="PTHR23090"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00795">
        <property type="entry name" value="CN_hydrolase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02540">
        <property type="entry name" value="NAD_synthase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF006630">
        <property type="entry name" value="NADS_GAT"/>
        <property type="match status" value="1"/>
    </dbReference>
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        <property type="entry name" value="SSF56317"/>
        <property type="match status" value="1"/>
    </dbReference>
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        <property type="entry name" value="nadE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50263">
        <property type="entry name" value="CN_HYDROLASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4 5 6" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="5 6 7" id="KW-0436">Ligase</keyword>
    <keyword evidence="5 6 7" id="KW-0520">NAD</keyword>
    <keyword evidence="3 5 6" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="CN hydrolase" evidence="8">
        <location>
            <begin position="2"/>
            <end position="255"/>
        </location>
    </feature>
    <feature type="active site" description="Proton acceptor; for glutaminase activity" evidence="5">
        <location>
            <position position="42"/>
        </location>
    </feature>
    <feature type="active site" description="For glutaminase activity" evidence="5">
        <location>
            <position position="115"/>
        </location>
    </feature>
    <feature type="active site" description="Nucleophile; for glutaminase activity" evidence="5">
        <location>
            <position position="152"/>
        </location>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <position position="121"/>
        </location>
        <ligand>
            <name>L-glutamine</name>
            <dbReference type="ChEBI" id="CHEBI:58359"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <position position="185"/>
        </location>
        <ligand>
            <name>L-glutamine</name>
            <dbReference type="ChEBI" id="CHEBI:58359"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <position position="191"/>
        </location>
        <ligand>
            <name>L-glutamine</name>
            <dbReference type="ChEBI" id="CHEBI:58359"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <begin position="303"/>
            <end position="310"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <position position="386"/>
        </location>
        <ligand>
            <name>deamido-NAD(+)</name>
            <dbReference type="ChEBI" id="CHEBI:58437"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <position position="410"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
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        <location>
            <position position="415"/>
        </location>
        <ligand>
            <name>deamido-NAD(+)</name>
            <dbReference type="ChEBI" id="CHEBI:58437"/>
        </ligand>
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        <location>
            <position position="538"/>
        </location>
        <ligand>
            <name>deamido-NAD(+)</name>
            <dbReference type="ChEBI" id="CHEBI:58437"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00005188"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00007145"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_02090"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="PIRNR" id="PIRNR006630"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="RuleBase" id="RU003811"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="PROSITE" id="PS50263"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="ABX38236.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="566" mass="62061" checksum="9F48F9F952F94C34" modified="2008-01-15" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="59" xmlns="http://uniprot.org/uniprot">
    <accession>A9BXL7</accession>
    <name>A9BXL7_DELAS</name>
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        <submittedName>
            <fullName evidence="2">Cobalamin synthesis protein P47K</fullName>
        </submittedName>
    </protein>
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        <name evidence="2" type="ordered locus">Daci_5665</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
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            <taxon>Betaproteobacteria</taxon>
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            <taxon>Comamonadaceae</taxon>
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        </lineage>
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    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
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            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
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            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX38293.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
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    <dbReference type="EnsemblBacteria" id="ABX38293">
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        <property type="gene ID" value="Daci_5665"/>
    </dbReference>
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    </dbReference>
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    </dbReference>
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    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
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        <location>
            <begin position="220"/>
            <end position="311"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="SMART" id="SM00833"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX38293.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="320" mass="33378" checksum="290904B9DE9E57B0" modified="2008-01-15" version="1">MGQRLPFTVIGGFLGAGKTTLLNHWLRHADGQRLAVLVNDFGALNIDAGLIKAHSGDTIALTNGCVCCQIGDDLSMALIGVLQQRERFDAVVVEASGVSDPWRIAQLGLADPALALDGVIVVVDAAALPGQAADPLLADTLQRQVARADLVIVNKTDLADTRTLERVHGWIARHAPAAQRCDVREARVPVELLSGAALMRGVREVSWGTGTARPMHGRQFETWSCQPPGGLCETALQAWLQAMPAGVLRLKGVVQTGAGQWSELQFAGRSGRLRAASAPAPAQQQVPAIVAIGLAGQLPVAALQALVAGAAGVRAAGRPA</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="55" xmlns="http://uniprot.org/uniprot">
    <accession>A9BXP6</accession>
    <name>A9BXP6_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="3">General secretion pathway L</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Daci_5694</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="4" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX38322.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_5694"/>
    <dbReference type="PRIDE" id="A9BXP6"/>
    <dbReference type="EnsemblBacteria" id="ABX38322">
        <property type="protein sequence ID" value="ABX38322"/>
        <property type="gene ID" value="Daci_5694"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_5694"/>
    <dbReference type="eggNOG" id="COG3297">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_640597_0_0_4"/>
    <dbReference type="OMA" id="WDLAQFD"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043129">
        <property type="entry name" value="ATPase_NBD"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR024230">
        <property type="entry name" value="GspL_cyto_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025691">
        <property type="entry name" value="GspL_pp_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12693">
        <property type="entry name" value="GspL_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF05134">
        <property type="entry name" value="T2SSL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53067">
        <property type="entry name" value="SSF53067"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="T2SSL" evidence="1">
        <location>
            <begin position="62"/>
            <end position="260"/>
        </location>
    </feature>
    <feature type="domain" description="GspL_C" evidence="2">
        <location>
            <begin position="285"/>
            <end position="416"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF05134"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF12693"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ABX38322.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="430" mass="45907" checksum="14CDC6A5A2A1D157" modified="2008-01-15" version="1">MTDGCHTRPLQCPLPPMSTLILHLPAGPAGEYAYALSSDGLRADRHGHAAAGLLPDPGRTGQTVAVVPHQALSWHLVSLPHGVPTGSRRGHVRLRAVLDGLLEERLLDEPSQLHLALQPQARAGEPCWVAACNKAWLHAHLQALESAGRPVGRIVPECPPQATPQLWAVGSPESAWLLATGLSTAAQGMDSLACLPLRTDSADPAMLAALLQALPPDTPIQADPALARAAEALQRPVSLLTDAQRGLAARAQSWDLAQFDLDLGGGSRTRRRMLDGWQSFLRAPQWKAARWGAVLALLAQVVGINAWAWTENRAIAAKQVQVRSTLATSFPRVPVIVDAPVQMQREVATLRQTAGALTQGDLEPLLAAASRALPAGQLPQAMDYQDRQLRLKGVSLEAEALEQAQQHLAGSGLRLQRDGADLLLAQEARP</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="56" xmlns="http://uniprot.org/uniprot">
    <accession>A9BXU6</accession>
    <name>A9BXU6_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">VWFA domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_5744</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX38372.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_5744"/>
    <dbReference type="PRIDE" id="A9BXU6"/>
    <dbReference type="EnsemblBacteria" id="ABX38372">
        <property type="protein sequence ID" value="ABX38372"/>
        <property type="gene ID" value="Daci_5744"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_5744"/>
    <dbReference type="eggNOG" id="COG1240">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_107054_0_0_4"/>
    <dbReference type="OMA" id="AQWLWQG"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.410">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002035">
        <property type="entry name" value="VWF_A"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036465">
        <property type="entry name" value="vWFA_dom_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13519">
        <property type="entry name" value="VWA_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53300">
        <property type="entry name" value="SSF53300"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="VWFA" evidence="1">
        <location>
            <begin position="1"/>
            <end position="104"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF13519"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX38372.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="153" mass="16196" checksum="516E48861357421F" modified="2008-01-15" version="1">MLDCSASMAGSGALARAKGVLLSLMEEAYRRREQVALICFAGTRVELSLPPRKAAAWNDDWIAPIGGGGGTPLQAAVEQAGQLLQRHCGADASCQGWLWLLTDGRTRERPARPAAAQEAGIVDFESGRVRLGRAAALAAAWDARHVRADDFAG</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="56" xmlns="http://uniprot.org/uniprot">
    <accession>A9BXX9</accession>
    <name>A9BXX9_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">GCN5-related N-acetyltransferase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_1270</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX33914.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_1270"/>
    <dbReference type="PRIDE" id="A9BXX9"/>
    <dbReference type="EnsemblBacteria" id="ABX33914">
        <property type="protein sequence ID" value="ABX33914"/>
        <property type="gene ID" value="Daci_1270"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_1270"/>
    <dbReference type="eggNOG" id="COG1670">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_091349_0_0_4"/>
    <dbReference type="OMA" id="RYLRFGY"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008080">
        <property type="term" value="F:N-acetyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016181">
        <property type="entry name" value="Acyl_CoA_acyltransferase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000182">
        <property type="entry name" value="GNAT_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00583">
        <property type="entry name" value="Acetyltransf_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55729">
        <property type="entry name" value="SSF55729"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51186">
        <property type="entry name" value="GNAT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="N-acetyltransferase" evidence="1">
        <location>
            <begin position="32"/>
            <end position="183"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS51186"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX33914.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="223" mass="25192" checksum="E6530373B8FCF05D" modified="2008-01-15" version="1">MRASAGQPHRPDGRSVSMVPIRSLGPSHRERVVAHLLKLDEGDRYLRFGYAASDEQVRRYAMQLDFERDDIFGIYNRRLELIAMAHLAFASHPEHKSCAEFGVSVLKQARGRGYGGRLFNRAVIHARTKGVSMMFIHALSENTAMLRIARKAGATIKRDGSESEAYLQLPPAGIDTHMASLMTEHIGEVDYQFKKQAKQFWDFLADVQEIRRGVQDGRHQAGE</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="42" xmlns="http://uniprot.org/uniprot">
    <accession>A9BY26</accession>
    <name>A9BY26_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_1317</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX33961.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_1317"/>
    <dbReference type="PRIDE" id="A9BY26"/>
    <dbReference type="EnsemblBacteria" id="ABX33961">
        <property type="protein sequence ID" value="ABX33961"/>
        <property type="gene ID" value="Daci_1317"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_1317"/>
    <dbReference type="eggNOG" id="ENOG502Z7Q8">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_333930_0_0_4"/>
    <dbReference type="OMA" id="YNRYAHI"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="205"/>
            <end position="224"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="236"/>
            <end position="255"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="361"/>
            <end position="379"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="411"/>
            <end position="428"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="457"/>
            <end position="474"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="486"/>
            <end position="507"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="560"/>
            <end position="580"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="592"/>
            <end position="612"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="632"/>
            <end position="650"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="671"/>
            <end position="691"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="697"/>
            <end position="716"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="721"/>
            <end position="739"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX33961.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="893" mass="100709" checksum="5A451D1FD2EF0CBE" modified="2008-01-15" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="69" xmlns="http://uniprot.org/uniprot">
    <accession>A9BY85</accession>
    <name>A9BY85_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Phosphoribosyltransferase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_1580</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX34224.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012203509.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_1580"/>
    <dbReference type="PRIDE" id="A9BY85"/>
    <dbReference type="EnsemblBacteria" id="ABX34224">
        <property type="protein sequence ID" value="ABX34224"/>
        <property type="gene ID" value="Daci_1580"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_1580"/>
    <dbReference type="eggNOG" id="COG2065">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_094234_1_1_4"/>
    <dbReference type="OMA" id="PIQPDFC"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016757">
        <property type="term" value="F:glycosyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd06223">
        <property type="entry name" value="PRTases_typeI"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.2020">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000836">
        <property type="entry name" value="PRibTrfase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029057">
        <property type="entry name" value="PRTase-like"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00156">
        <property type="entry name" value="Pribosyltran"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53271">
        <property type="entry name" value="SSF53271"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0328">Glycosyltransferase</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Pribosyltran" evidence="1">
        <location>
            <begin position="30"/>
            <end position="139"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF00156"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX34224.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="172" mass="18640" checksum="93EADDA81E5B8010" modified="2008-01-15" version="1">MSETIAGAGSLVLDAEALYRELLRGVRSLMGPETRLAGITSGGAWLVERLHKDLNLPGNPSVLSSALHRDDFAQRGMATSAQTQIDFDVNGADILVLDDVLYTGRTVRAVLNELYDYGRPACVRLAVLVDRGGRELPFQADFAAARIALPADRLLSLARDDAGVFQFRIQEA</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="80" xmlns="http://uniprot.org/uniprot">
    <accession>A9BYA7</accession>
    <name>A9BYA7_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Transcriptional regulator, IclR family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ordered locus">Daci_1602</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="6" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX34246.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_1602"/>
    <dbReference type="PRIDE" id="A9BYA7"/>
    <dbReference type="EnsemblBacteria" id="ABX34246">
        <property type="protein sequence ID" value="ABX34246"/>
        <property type="gene ID" value="Daci_1602"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_1602"/>
    <dbReference type="eggNOG" id="COG1414">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_062618_4_0_4"/>
    <dbReference type="OMA" id="RRITSAW"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006355">
        <property type="term" value="P:regulation of transcription, DNA-templated"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.450.40">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029016">
        <property type="entry name" value="GAF-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014757">
        <property type="entry name" value="Tscrpt_reg_IclR_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005471">
        <property type="entry name" value="Tscrpt_reg_IclR_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036390">
        <property type="entry name" value="WH_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF09339">
        <property type="entry name" value="HTH_IclR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01614">
        <property type="entry name" value="IclR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00346">
        <property type="entry name" value="HTH_ICLR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46785">
        <property type="entry name" value="SSF46785"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51077">
        <property type="entry name" value="HTH_ICLR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51078">
        <property type="entry name" value="ICLR_ED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0804">Transcription</keyword>
    <keyword evidence="1" id="KW-0805">Transcription regulation</keyword>
    <feature type="domain" description="HTH iclR-type" evidence="3">
        <location>
            <begin position="13"/>
            <end position="76"/>
        </location>
    </feature>
    <feature type="domain" description="IclR-ED" evidence="4">
        <location>
            <begin position="77"/>
            <end position="260"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023015"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023163"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="PROSITE" id="PS51077"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="PROSITE" id="PS51078"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="ABX34246.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="270" mass="29265" checksum="9E8F3427F10AA929" modified="2008-01-15" version="1">MTTSPSGTARDTAKSLGRSIAILKALSAPSRHGFPLSELSRMTGLPHPTTLRLLRHLTESGMVACNVQTKLYRLGPLAFELGLAAAEHCDIRGLCGESMDRLQAETQDTCYLTLRSGFDAVCLDRREGLSPIRVLTLDVGSRRPLGVGAAGLAILLRLSDGEAESLIQAAGPRLARYNRMDMDTMRTLLTESRERGYAVCGNWVTLGVTAVAMPLCTADGRPLGSLSISAVNHRMPKERWPQLAALLRQEADLIQRRLNNPTPAQGVRLP</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="29" xmlns="http://uniprot.org/uniprot">
    <accession>A9BYC3</accession>
    <name>A9BYC3_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_1618</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX34262.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="PRIDE" id="A9BYC3"/>
    <dbReference type="EnsemblBacteria" id="ABX34262">
        <property type="protein sequence ID" value="ABX34262"/>
        <property type="gene ID" value="Daci_1618"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_1618"/>
    <dbReference type="HOGENOM" id="CLU_1841853_0_0_4"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="15"/>
            <end position="46"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="20"/>
            <end position="35"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX34262.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="139" mass="15281" checksum="4A51899A65194E7A" modified="2008-01-15" version="1">MFAAVVGSCVMNGADRESRVSAAQAEREAAEAAKSPEQKAAEASVKAQRDREMNIVLSGAKLLKQSMKKPETFELKSAILVDGKTVCYEYEARNSFNDRAREFYVLSLTDKATGSDASVWNKRCADKQGTDYTSVRVML</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="54" xmlns="http://uniprot.org/uniprot">
    <accession>A9BYH4</accession>
    <name>A9BYH4_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">PepSY-associated TM helix domain protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_1877</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX34517.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_1877"/>
    <dbReference type="PRIDE" id="A9BYH4"/>
    <dbReference type="EnsemblBacteria" id="ABX34517">
        <property type="protein sequence ID" value="ABX34517"/>
        <property type="gene ID" value="Daci_1877"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_1877"/>
    <dbReference type="eggNOG" id="COG3182">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_031962_0_0_4"/>
    <dbReference type="OMA" id="FSSEHHY"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005625">
        <property type="entry name" value="PepSY-ass_TM"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR34219">
        <property type="entry name" value="PTHR34219"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03929">
        <property type="entry name" value="PepSY_TM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="30"/>
            <end position="51"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="161"/>
            <end position="185"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="206"/>
            <end position="227"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="354"/>
            <end position="375"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX34517.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="395" mass="43870" checksum="4DC00B66B8EE9A70" modified="2008-01-15" version="1">MAGAPGPLLSEKKHPMQSHTIKTWAWLHKWSSLVCTVFMLLLCLTGLPLIFHHEIGHLLGTEVEAPPMPQGTPHASLDKVLEVARAQHPDRVVQFVSKSDDTDDLWFVTMTPTPAPTDDFRSVVVDARTAELLAQPRFDQGFMWVMFKLHVDLFAGLPGKLFLGFMGLLLLIAIVSGVVLYAPFMRKLDFGTVRRTRQPRLKWLDLHNLLGIVTLVWLFVVGATGMINTWADLLIKYWQHDQLSSVLAPYQGQDTVPVAERASLQQSLQAAQQQVPGTKLYFIAFPGTTFSSPHHHTFFLRGNEPLTSRLFLPVLVDAKTAQVTAAPALPWYLTALLVSQPLHFGDYGGRAMQILWALLDIASIIVLGTGLYLWVKKGKSVPAPQPAPRGKEITA</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="82" xmlns="http://uniprot.org/uniprot">
    <accession>A9BYI7</accession>
    <name>A9BYI7_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Transcriptional regulator, GntR family with aminotransferase domain</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Daci_1890</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="4" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">In the C-terminal section; belongs to the class-I pyridoxal-phosphate-dependent aminotransferase family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX34530.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="PRIDE" id="A9BYI7"/>
    <dbReference type="EnsemblBacteria" id="ABX34530">
        <property type="protein sequence ID" value="ABX34530"/>
        <property type="gene ID" value="Daci_1890"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_1890"/>
    <dbReference type="eggNOG" id="COG1167">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_017584_0_0_4"/>
    <dbReference type="OMA" id="EGHYRKH"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003700">
        <property type="term" value="F:DNA-binding transcription factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030170">
        <property type="term" value="F:pyridoxal phosphate binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008483">
        <property type="term" value="F:transaminase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009058">
        <property type="term" value="P:biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd07377">
        <property type="entry name" value="WHTH_GntR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.640.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.1150.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004839">
        <property type="entry name" value="Aminotransferase_I/II"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015424">
        <property type="entry name" value="PyrdxlP-dep_Trfase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015421">
        <property type="entry name" value="PyrdxlP-dep_Trfase_major"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015422">
        <property type="entry name" value="PyrdxlP-dep_Trfase_small"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000524">
        <property type="entry name" value="Tscrpt_reg_HTH_GntR"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036390">
        <property type="entry name" value="WH_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00155">
        <property type="entry name" value="Aminotran_1_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00392">
        <property type="entry name" value="GntR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00345">
        <property type="entry name" value="HTH_GNTR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46785">
        <property type="entry name" value="SSF46785"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53383">
        <property type="entry name" value="SSF53383"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50949">
        <property type="entry name" value="HTH_GNTR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-0032">Aminotransferase</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="HTH gntR-type" evidence="2">
        <location>
            <begin position="33"/>
            <end position="101"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00005384"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS50949"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ABX34530.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="488" mass="53241" checksum="256E70D553AE91B9" modified="2008-01-15" version="1">MHGRIFHRQSNTIQKNCYAHKTTTEERAAMRSGTRIQAVMEEIQSRIAARTYLPGTRLPSVRAQAQAMQVSVSTVVEAYERLAAEGVIVSRPGSGFYVAGPVAPLALGGIGPRVDREVDPLWLARQSLQADAHALKPGCGWLPPSWLYEEGVRRALRSLARSGTLELTEYATPLGHPALRRLLARRMAAMGLETSPEQILLTESGTHSIDLVCRFLLEPGDTVLIDDPCYFNFHALLKAHRVQAVSVPYTPQGPDVARFADALQAHSPRLYITNSAIHNPTGATLSPLVAHRILKLADSSDLVIVEDDIFCDLETHAAPRLAAFDGLSRVIQIGSFSKTVSASLRCGFIAARPDWTQDLADLKIATNFGGGRMAADIVLRTLTDSGYRRHMESVRLRLAQEMERTAARLQALGMKPWLVPQAGMFLWCQLPGGMDATALARTCLEDGVVLAPGNAFSQSQSAGDFLRFNVAQCSDARIFEVLARALKG</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="96" xmlns="http://uniprot.org/uniprot">
    <accession>A9BYY7</accession>
    <name>A9BYY7_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="10">1-deoxy-D-xylulose-5-phosphate synthase</fullName>
            <ecNumber evidence="10">2.2.1.7</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="10">1-deoxyxylulose-5-phosphate synthase</fullName>
            <shortName evidence="10">DXP synthase</shortName>
            <shortName evidence="10">DXPS</shortName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="10" type="primary">dxs</name>
        <name evidence="12" type="ordered locus">Daci_2242</name>
    </gene>
    <organism evidence="12 13">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="12 13" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="13">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="13" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="13">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="10">Catalyzes the acyloin condensation reaction between C atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D-xylulose-5-phosphate (DXP).</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="10">
            <text>D-glyceraldehyde 3-phosphate + H(+) + pyruvate = 1-deoxy-D-xylulose 5-phosphate + CO2</text>
            <dbReference type="Rhea" id="RHEA:12605"/>
            <dbReference type="ChEBI" id="CHEBI:15361"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:16526"/>
            <dbReference type="ChEBI" id="CHEBI:57792"/>
            <dbReference type="ChEBI" id="CHEBI:59776"/>
            <dbReference type="EC" id="2.2.1.7"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="10">
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </cofactor>
        <text evidence="10">Binds 1 Mg(2+) ion per subunit.</text>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="10">
            <name>thiamine diphosphate</name>
            <dbReference type="ChEBI" id="CHEBI:58937"/>
        </cofactor>
        <text evidence="10">Binds 1 thiamine pyrophosphate per subunit.</text>
    </comment>
    <comment type="pathway">
        <text evidence="1 10">Metabolic intermediate biosynthesis; 1-deoxy-D-xylulose 5-phosphate biosynthesis; 1-deoxy-D-xylulose 5-phosphate from D-glyceraldehyde 3-phosphate and pyruvate: step 1/1.</text>
    </comment>
    <comment type="subunit">
        <text evidence="3 10">Homodimer.</text>
    </comment>
    <comment type="similarity">
        <text evidence="2 10">Belongs to the transketolase family. DXPS subfamily.</text>
    </comment>
    <dbReference type="EC" id="2.2.1.7" evidence="10"/>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX34882.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_2242"/>
    <dbReference type="PRIDE" id="A9BYY7"/>
    <dbReference type="EnsemblBacteria" id="ABX34882">
        <property type="protein sequence ID" value="ABX34882"/>
        <property type="gene ID" value="Daci_2242"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_2242"/>
    <dbReference type="eggNOG" id="COG1154">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_009227_1_4_4"/>
    <dbReference type="OMA" id="QVGYHAQ"/>
    <dbReference type="UniPathway" id="UPA00064">
        <property type="reaction ID" value="UER00091"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008661">
        <property type="term" value="F:1-deoxy-D-xylulose-5-phosphate synthase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000287">
        <property type="term" value="F:magnesium ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030976">
        <property type="term" value="F:thiamine pyrophosphate binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0052865">
        <property type="term" value="P:1-deoxy-D-xylulose 5-phosphate biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniPathway"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016114">
        <property type="term" value="P:terpenoid biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009228">
        <property type="term" value="P:thiamine biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd02007">
        <property type="entry name" value="TPP_DXS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.920">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00315">
        <property type="entry name" value="DXP_synth"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005477">
        <property type="entry name" value="Dxylulose-5-P_synthase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029061">
        <property type="entry name" value="THDP-binding"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009014">
        <property type="entry name" value="Transketo_C/PFOR_II"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005475">
        <property type="entry name" value="Transketolase-like_Pyr-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020826">
        <property type="entry name" value="Transketolase_BS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR033248">
        <property type="entry name" value="Transketolase_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005474">
        <property type="entry name" value="Transketolase_N"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43322">
        <property type="entry name" value="PTHR43322"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13292">
        <property type="entry name" value="DXP_synthase_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02779">
        <property type="entry name" value="Transket_pyr"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02780">
        <property type="entry name" value="Transketolase_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00861">
        <property type="entry name" value="Transket_pyr"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52518">
        <property type="entry name" value="SSF52518"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52922">
        <property type="entry name" value="SSF52922"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00204">
        <property type="entry name" value="dxs"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00801">
        <property type="entry name" value="TRANSKETOLASE_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00802">
        <property type="entry name" value="TRANSKETOLASE_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="9 10" id="KW-0414">Isoprene biosynthesis</keyword>
    <keyword evidence="6 10" id="KW-0460">Magnesium</keyword>
    <keyword evidence="5 10" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="13" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="7 10" id="KW-0784">Thiamine biosynthesis</keyword>
    <keyword evidence="8 10" id="KW-0786">Thiamine pyrophosphate</keyword>
    <keyword evidence="4 10" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="TRANSKETOLASE_1" evidence="11">
        <location>
            <begin position="46"/>
            <end position="65"/>
        </location>
    </feature>
    <feature type="region of interest" description="Thiamine pyrophosphate binding" evidence="10">
        <location>
            <begin position="131"/>
            <end position="133"/>
        </location>
    </feature>
    <feature type="region of interest" description="Thiamine pyrophosphate binding" evidence="10">
        <location>
            <begin position="163"/>
            <end position="164"/>
        </location>
    </feature>
    <feature type="binding site" evidence="10">
        <location>
            <position position="90"/>
        </location>
        <ligand>
            <name>thiamine diphosphate</name>
            <dbReference type="ChEBI" id="CHEBI:58937"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="10">
        <location>
            <position position="162"/>
        </location>
        <ligand>
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="10">
        <location>
            <position position="191"/>
        </location>
    </feature>
    <feature type="binding site" evidence="10">
        <location>
            <position position="298"/>
        </location>
        <ligand>
            <name>thiamine diphosphate</name>
            <dbReference type="ChEBI" id="CHEBI:58937"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="10">
        <location>
            <position position="380"/>
        </location>
        <ligand>
            <name>thiamine diphosphate</name>
            <dbReference type="ChEBI" id="CHEBI:58937"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004980"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00011081"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00011738"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022842"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022977"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00023052"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00023229"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00315"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="11">
        <source>
            <dbReference type="PROSITE" id="PS00801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="EMBL" id="ABX34882.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="13">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="638" mass="68504" checksum="2DAA330BF8FBB808" modified="2008-01-15" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="73" xmlns="http://uniprot.org/uniprot">
    <accession>A9BYY8</accession>
    <name>A9BYY8_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">Extracytoplasmic solute receptor protein</fullName>
        </recommendedName>
        <alternativeName>
            <fullName evidence="2">TRAP transporter</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="5" type="ordered locus">Daci_2243</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="6" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="2">Part of the tripartite ATP-independent periplasmic (TRAP) transport system.</text>
    </comment>
    <comment type="subunit">
        <text evidence="2">Homodimer.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="2">Periplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the bacterial solute-binding protein 7 family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX34883.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012204166.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_2243"/>
    <dbReference type="PRIDE" id="A9BYY8"/>
    <dbReference type="EnsemblBacteria" id="ABX34883">
        <property type="protein sequence ID" value="ABX34883"/>
        <property type="gene ID" value="Daci_2243"/>
    </dbReference>
    <dbReference type="GeneID" id="60686637"/>
    <dbReference type="KEGG" id="dac:Daci_2243"/>
    <dbReference type="eggNOG" id="COG4663">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_036176_0_1_4"/>
    <dbReference type="OMA" id="LHFWINA"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0042597">
        <property type="term" value="C:periplasmic space"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0031317">
        <property type="term" value="C:tripartite ATP-independent periplasmic transporter complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043177">
        <property type="term" value="F:organic acid binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015849">
        <property type="term" value="P:organic acid transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0055085">
        <property type="term" value="P:transmembrane transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd13682">
        <property type="entry name" value="PBP2_TRAP_alpha-ketoacid"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.190.170">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018389">
        <property type="entry name" value="DctP_fam"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR026289">
        <property type="entry name" value="SBP_TakP-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041722">
        <property type="entry name" value="TakP/all3028"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038404">
        <property type="entry name" value="TRAP_DctP_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33376">
        <property type="entry name" value="PTHR33376"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03480">
        <property type="entry name" value="DctP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF039026">
        <property type="entry name" value="SiaP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2 4" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="2" id="KW-0574">Periplasm</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <keyword evidence="2" id="KW-0813">Transport</keyword>
    <feature type="binding site" evidence="3 4">
        <location>
            <position position="154"/>
        </location>
    </feature>
    <feature type="binding site" evidence="3">
        <location>
            <position position="175"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="4">
        <location>
            <position position="213"/>
        </location>
        <ligand>
            <name>a metal cation</name>
            <dbReference type="ChEBI" id="CHEBI:25213"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="4">
        <location>
            <position position="239"/>
        </location>
        <ligand>
            <name>a metal cation</name>
            <dbReference type="ChEBI" id="CHEBI:25213"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022729"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="PIRNR" id="PIRNR039026"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="PIRSR" id="PIRSR039026-1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="PIRSR" id="PIRSR039026-2"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="ABX34883.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="360" mass="39772" checksum="0296292E39C25172" modified="2008-01-15" version="1">MDRRSIIKHAGIAGVLAVGAAPAVHAQEAIRWRLAASFPKSLDTIFGSAEMFSKTLKAMSGGKFEVSVHAAGELMPAFGVVDGIQNGTIEMALTAPYYFTGKDYIFAFGCAVPFGLTARQMDAWMEHGGGRKLMDEFYAQYNIKSQSAGNTGTQMGGWFRKEIKSVADLKGLKMRLGGGLFGDAMLKLGVVAQNMPVGEVYQALEKGTLDAVEFVGPYDDQKLGFNKVAPYYYYPGWWEGGAELEFFINTKAYAALSPEYKAMVDAACNVAARDMTAKYDANNPVALKKLVADKTQLKAFPKDFMDAGYKAVMEIMAEHDAKSPMFKKINQSLRTFQRDQLLWERFSEFRYNSYMTTAKL</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="44" xmlns="http://uniprot.org/uniprot">
    <accession>A9BZ21</accession>
    <name>A9BZ21_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Daci_2483</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="4" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX35121.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012204402.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_2483"/>
    <dbReference type="PRIDE" id="A9BZ21"/>
    <dbReference type="EnsemblBacteria" id="ABX35121">
        <property type="protein sequence ID" value="ABX35121"/>
        <property type="gene ID" value="Daci_2483"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_2483"/>
    <dbReference type="eggNOG" id="COG3187">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_063818_0_0_4"/>
    <dbReference type="OMA" id="KCSHPLI"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.128.270">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005184">
        <property type="entry name" value="DUF306_Meta_HslJ"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025485">
        <property type="entry name" value="DUF4377"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038670">
        <property type="entry name" value="HslJ-like_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF14302">
        <property type="entry name" value="DUF4377"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03724">
        <property type="entry name" value="META"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="META" evidence="1">
        <location>
            <begin position="67"/>
            <end position="170"/>
        </location>
    </feature>
    <feature type="domain" description="DUF4377" evidence="2">
        <location>
            <begin position="190"/>
            <end position="274"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF03724"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF14302"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ABX35121.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="280" mass="31215" checksum="F3998F31497D0815" modified="2008-01-15" version="1">MKPSWTWCLPVIVTMGLGACSHIDKGGNAEEGAKTQASAPAGPPGDAQSLTAYHWNLRQAFTPQGTEDQSWFLTAASRKRPLQLEFADQRLAVKNLCNVVTTGYRTEGNRIATQRAASTLMACDDDQLMALEQKVARILPTAKQWSVQLGEGNQPARLTLTFIDGTRWQFDGSPTAQTQYGSAGERIFLEVAPQRTACNHPLIKDFQCLRVREIRYGDNGVKTSTGEWENFYSEIEGYKHEPGIRNVLRIQRYKRQNVPADASAYAYVLDMVVESERVGR</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="92" xmlns="http://uniprot.org/uniprot">
    <accession>A9BZ29</accession>
    <name>A9BZ29_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="6 8">3-dehydroquinate dehydratase</fullName>
            <shortName evidence="8">3-dehydroquinase</shortName>
            <ecNumber evidence="6 8">4.2.1.10</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="8">Type II DHQase</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="8" type="primary">aroQ</name>
        <name evidence="12" type="ordered locus">Daci_2491</name>
    </gene>
    <organism evidence="12 13">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="12 13" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="13">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="13" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="13">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="2 8">Catalyzes a trans-dehydration via an enolate intermediate.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1 8">
            <text>3-dehydroquinate = 3-dehydroshikimate + H2O</text>
            <dbReference type="Rhea" id="RHEA:21096"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:16630"/>
            <dbReference type="ChEBI" id="CHEBI:32364"/>
            <dbReference type="EC" id="4.2.1.10"/>
        </reaction>
    </comment>
    <comment type="pathway">
        <text evidence="3 8">Metabolic intermediate biosynthesis; chorismate biosynthesis; chorismate from D-erythrose 4-phosphate and phosphoenolpyruvate: step 3/7.</text>
    </comment>
    <comment type="subunit">
        <text evidence="5 8">Homododecamer.</text>
    </comment>
    <comment type="similarity">
        <text evidence="4 8">Belongs to the type-II 3-dehydroquinase family.</text>
    </comment>
    <dbReference type="EC" id="4.2.1.10" evidence="6 8"/>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX35129.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012204410.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_2491"/>
    <dbReference type="PRIDE" id="A9BZ29"/>
    <dbReference type="EnsemblBacteria" id="ABX35129">
        <property type="protein sequence ID" value="ABX35129"/>
        <property type="gene ID" value="Daci_2491"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_2491"/>
    <dbReference type="eggNOG" id="COG0757">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_090968_2_0_4"/>
    <dbReference type="OMA" id="CAGIVIN"/>
    <dbReference type="UniPathway" id="UPA00053">
        <property type="reaction ID" value="UER00086"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003855">
        <property type="term" value="F:3-dehydroquinate dehydratase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009073">
        <property type="term" value="P:aromatic amino acid family biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008652">
        <property type="term" value="P:cellular amino acid biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009423">
        <property type="term" value="P:chorismate biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniPathway"/>
    </dbReference>
    <dbReference type="CDD" id="cd00466">
        <property type="entry name" value="DHQase_II"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.9100">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00169">
        <property type="entry name" value="AroQ"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001874">
        <property type="entry name" value="DHquinase_II"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018509">
        <property type="entry name" value="DHquinase_II_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036441">
        <property type="entry name" value="DHquinase_II_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR21272">
        <property type="entry name" value="PTHR21272"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01220">
        <property type="entry name" value="DHquinase_II"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF001399">
        <property type="entry name" value="DHquinase_II"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52304">
        <property type="entry name" value="SSF52304"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01088">
        <property type="entry name" value="aroQ"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01029">
        <property type="entry name" value="DEHYDROQUINASE_II"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="8" id="KW-0028">Amino-acid biosynthesis</keyword>
    <keyword evidence="8" id="KW-0057">Aromatic amino acid biosynthesis</keyword>
    <keyword evidence="7 8 12" id="KW-0456">Lyase</keyword>
    <keyword evidence="13" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Substrate binding" evidence="8 10">
        <location>
            <begin position="106"/>
            <end position="107"/>
        </location>
    </feature>
    <feature type="active site" description="Proton acceptor" evidence="8 9">
        <location>
            <position position="23"/>
        </location>
    </feature>
    <feature type="active site" description="Proton donor" evidence="8 9">
        <location>
            <position position="105"/>
        </location>
    </feature>
    <feature type="binding site" evidence="8 10">
        <location>
            <position position="79"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="8 10">
        <location>
            <position position="85"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="8 10">
        <location>
            <position position="92"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="8 10">
        <location>
            <position position="116"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="site" description="Transition state stabilizer" evidence="8 11">
        <location>
            <position position="18"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001864"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00003924"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00004902"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00011037"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00011193"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00012060"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023239"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00169"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="PIRSR" id="PIRSR001399-1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="PIRSR" id="PIRSR001399-2"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="PIRSR" id="PIRSR001399-3"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="EMBL" id="ABX35129.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="13">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="147" mass="15755" checksum="2CE761D41D85C2E5" modified="2008-01-15" version="1">MKTVYVLNGPNLNLLGLREPAIYGSQTLADVRALCEAACARYGLGLEFRQSNHEGELVDWVHEAGRVHAEGRLAGLIFNAAAYTHTSVALLDAVKGTGVPLVELHISNVHARESFRHHSYLSAAARAVMCGFGVAGYGLAIDAVAQW</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="46" xmlns="http://uniprot.org/uniprot">
    <accession>A9BZ70</accession>
    <name>A9BZ70_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Daci_2532</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="2" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX35170.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012204449.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_2532"/>
    <dbReference type="PRIDE" id="A9BZ70"/>
    <dbReference type="EnsemblBacteria" id="ABX35170">
        <property type="protein sequence ID" value="ABX35170"/>
        <property type="gene ID" value="Daci_2532"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_2532"/>
    <dbReference type="eggNOG" id="COG5397">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_1069198_0_0_4"/>
    <dbReference type="OMA" id="NGFYAEF"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR022550">
        <property type="entry name" value="NTP_transf_8"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12281">
        <property type="entry name" value="NTP_transf_8"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ABX35170.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="269" mass="29942" checksum="0E08F3B7B3ECEF4C" modified="2008-01-15" version="1">MNDLHAFAKLVKALSPWRGQLVFIGGWSHRLHSLHPQANRQEHQPVFTRDTDLAFANKAPIEGDMRSALAAHGFTEQLAGEFKPPAAHYTLGSDSKGFYAEFLTPLSGSGRKRDGTPDATMEKAGISAQKIRHLEILLVDPWVVTAGPQNGIPLEAPVDLQVANPLCFMVQKLLIKKDRKPAKHAQDLLYIYDTISLFGHLLPLFKDCWNTSVHPALGDMGDTVTREWDASFAHVTDAIRQAALIPADRKLSPEELQATCRYAFDRIFR</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="64" xmlns="http://uniprot.org/uniprot">
    <accession>A9BZE7</accession>
    <name>A9BZE7_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Blue (Type 1) copper domain protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ordered locus">Daci_2909</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="5" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Periplasm</location>
        </subcellularLocation>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX35547.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012204757.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_2909"/>
    <dbReference type="PRIDE" id="A9BZE7"/>
    <dbReference type="EnsemblBacteria" id="ABX35547">
        <property type="protein sequence ID" value="ABX35547"/>
        <property type="gene ID" value="Daci_2909"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_2909"/>
    <dbReference type="eggNOG" id="COG4454">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_102172_0_0_4"/>
    <dbReference type="OMA" id="DEHAQMM"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0042597">
        <property type="term" value="C:periplasmic space"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005507">
        <property type="term" value="F:copper ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009055">
        <property type="term" value="F:electron transfer activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.40.420">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000923">
        <property type="entry name" value="BlueCu_1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR033138">
        <property type="entry name" value="Cu_oxidase_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008972">
        <property type="entry name" value="Cupredoxin"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00127">
        <property type="entry name" value="Copper-bind"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF49503">
        <property type="entry name" value="SSF49503"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00079">
        <property type="entry name" value="MULTICOPPER_OXIDASE1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="2">
        <location>
            <begin position="1"/>
            <end position="21"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5002735224" evidence="2">
        <location>
            <begin position="22"/>
            <end position="163"/>
        </location>
    </feature>
    <feature type="domain" description="Copper-bind" evidence="3">
        <location>
            <begin position="58"/>
            <end position="161"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004418"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF00127"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="ABX35547.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="163" mass="17691" checksum="CB7B52BA12AB473F" modified="2008-01-15" version="1">MNTFALLLATALLAGPAAVFAHGSEAHDDAPKTAAVKEQKPWGIAGDASAARRTITLDMSDNMRFTPERISVKRGETVRLRVANKGQVMHEIVLGTPASLDEHAQMMLKFPTMEHGEPYMAHVSPGKSGDLVWNFNREGSFDFACLIPGHYQAGMRGTITVTQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="52" xmlns="http://uniprot.org/uniprot">
    <accession>A9BZH2</accession>
    <name>A9BZH2_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Daci_2934</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="2" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX35572.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_2934"/>
    <dbReference type="PRIDE" id="A9BZH2"/>
    <dbReference type="EnsemblBacteria" id="ABX35572">
        <property type="protein sequence ID" value="ABX35572"/>
        <property type="gene ID" value="Daci_2934"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_2934"/>
    <dbReference type="eggNOG" id="ENOG5031CKM">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_076279_0_0_4"/>
    <dbReference type="OMA" id="LGLYMDP"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027849">
        <property type="entry name" value="DUF4434"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006311">
        <property type="entry name" value="TAT_signal"/>
    </dbReference>
    <dbReference type="Pfam" id="PF14488">
        <property type="entry name" value="DUF4434"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51318">
        <property type="entry name" value="TAT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ABX35572.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="349" mass="38854" checksum="55A1485C90BAEA5E" modified="2008-01-15" version="1">MRGGCRAAWLYSWRFASRSLAAVPTMHLSRREFLGAGAAAACASLVGCAASAPVSGSFLQPWRSHLEMPRDQWRQRLAATQALGCRELFVQWSGLQGESEADSWMLADAQIADLLDIGTELGMGVHLGLPYDERWWKQISLSNAAGPAPYLAHIAEQGAAYMYASTWPRHAAFRGWYIPYELEQYHWAAPERIELLLSALQPLAQAAAATSGQVPGISTYFSQLQTLGSLPTLWSILLDRVSLRPMVQDGVGVAGLRNYEALAPLQQMLLERRAPFDLIVELFEQLPPTRPDGSDFQARTASFERVRRQWDVARDYGAQRVVAFAIDPWVLNDTPEAKQLLREWKAAAR</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="31" xmlns="http://uniprot.org/uniprot">
    <accession>A9C048</accession>
    <name>A9C048_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_3678</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX36310.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="PRIDE" id="A9C048"/>
    <dbReference type="EnsemblBacteria" id="ABX36310">
        <property type="protein sequence ID" value="ABX36310"/>
        <property type="gene ID" value="Daci_3678"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_3678"/>
    <dbReference type="HOGENOM" id="CLU_1141110_0_0_4"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="1">
        <location>
            <begin position="1"/>
            <end position="20"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5002736053" evidence="1">
        <location>
            <begin position="21"/>
            <end position="243"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX36310.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="243" mass="26395" checksum="28F99848950E0688" modified="2008-01-15" version="1">MPSKILTGSILFLVSISATAQDFLIGNEEIEKNGMPMVARSISGSMAGMNGTVTINLVKLSNGSYLYETTNQNDEAIEFNKRLCKMYGDKNPESPGKMVIGSDERNIPLHCEPPSLQKEMSFKQHSNYYYMPGGQWDYRPVLSLSYDPYSRAGSYTRVSASAGVDFSVARGGDLSLAVGVRGIPNCYNNGFTMAGSIPVANLQVAVLCYMYPHLAGTRGKAVSARAVSESKYSASENGIMEIY</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="78" xmlns="http://uniprot.org/uniprot">
    <accession>A9C084</accession>
    <name>A9C084_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="12">ABC transporter domain protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="12" type="ordered locus">Daci_4019</name>
    </gene>
    <organism evidence="12 13">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="12 13" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="13">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="13" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="13">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX36650.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012205844.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
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    <dbReference type="EnsemblBacteria" id="ABX36650">
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        <property type="gene ID" value="Daci_4019"/>
    </dbReference>
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        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
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    </dbReference>
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        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
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        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
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        <property type="term" value="F:ABC-type transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.1560.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003593">
        <property type="entry name" value="AAA+_ATPase"/>
    </dbReference>
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        <property type="entry name" value="ABC1_TM_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036640">
        <property type="entry name" value="ABC1_TM_sf"/>
    </dbReference>
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        <property type="entry name" value="ABC_transporter-like_ATP-bd"/>
    </dbReference>
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        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="Pfam" id="PF06472">
        <property type="entry name" value="ABC_membrane_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00005">
        <property type="entry name" value="ABC_tran"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00382">
        <property type="entry name" value="AAA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF90123">
        <property type="entry name" value="SSF90123"/>
        <property type="match status" value="1"/>
    </dbReference>
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        <property type="entry name" value="ABC_TM1F"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50893">
        <property type="entry name" value="ABC_TRANSPORTER_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4 8" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="1" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="7 9" id="KW-0472">Membrane</keyword>
    <keyword evidence="3 8" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="13" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="5" id="KW-1278">Translocase</keyword>
    <keyword evidence="2 9" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="6 9" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="9">
        <location>
            <begin position="12"/>
            <end position="37"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="9">
        <location>
            <begin position="58"/>
            <end position="79"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="9">
        <location>
            <begin position="99"/>
            <end position="120"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="9">
        <location>
            <begin position="179"/>
            <end position="202"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="9">
        <location>
            <begin position="214"/>
            <end position="233"/>
        </location>
    </feature>
    <feature type="domain" description="ABC transmembrane type-1" evidence="11">
        <location>
            <begin position="62"/>
            <end position="360"/>
        </location>
    </feature>
    <feature type="domain" description="ABC transporter" evidence="10">
        <location>
            <begin position="393"/>
            <end position="606"/>
        </location>
    </feature>
    <feature type="binding site" evidence="8">
        <location>
            <begin position="426"/>
            <end position="433"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022967"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00434"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="10">
        <source>
            <dbReference type="PROSITE" id="PS50893"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="11">
        <source>
            <dbReference type="PROSITE" id="PS50929"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="EMBL" id="ABX36650.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="13">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="606" mass="67811" checksum="3A30C95081DCCA7D" modified="2008-01-15" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="52" xmlns="http://uniprot.org/uniprot">
    <accession>A9C0A1</accession>
    <name>A9C0A1_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Integral membrane protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_4036</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX36667.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012205861.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_4036"/>
    <dbReference type="PRIDE" id="A9C0A1"/>
    <dbReference type="EnsemblBacteria" id="ABX36667">
        <property type="protein sequence ID" value="ABX36667"/>
        <property type="gene ID" value="Daci_4036"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_4036"/>
    <dbReference type="eggNOG" id="COG5473">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_067791_0_0_4"/>
    <dbReference type="OMA" id="MYQVRLL"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018692">
        <property type="entry name" value="DUF2189"/>
    </dbReference>
    <dbReference type="Pfam" id="PF09955">
        <property type="entry name" value="DUF2189"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
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    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
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        <location>
            <begin position="46"/>
            <end position="64"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="70"/>
            <end position="90"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="121"/>
            <end position="144"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="164"/>
            <end position="189"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="210"/>
            <end position="234"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX36667.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="269" mass="29131" checksum="ECE1621D9FFE462C" modified="2008-01-15" version="1">MQASPAPEKASDNPAGMLQVQLLRMADPWRWLALGWRDLRRAPGVALFYGLCFWAMALLIGWVFRASPEYSMAMASGCLLIGPFLAMGLYDTSRRLERGLPPQLSSSLTCWDTQMGSMGMLVMVLLVLEMLWARASMVVFAVFFDTGMPTTAGMLQAVARPENWEFLAIYLLVGGAFAALVFASMVVALPAMLDRGSDALTACITSMRVVGLNLAVMLQWAAIITVLVAVALWWHGAGLLLVGPLLGCASWHAYRCSVGDYAVPASTIS</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="56" xmlns="http://uniprot.org/uniprot">
    <accession>A9C0D8</accession>
    <name>A9C0D8_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="8">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="8" type="ordered locus">Daci_4073</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="9" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the SOS response-associated peptidase family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX36704.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="PRIDE" id="A9C0D8"/>
    <dbReference type="EnsemblBacteria" id="ABX36704">
        <property type="protein sequence ID" value="ABX36704"/>
        <property type="gene ID" value="Daci_4073"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_4073"/>
    <dbReference type="eggNOG" id="COG2135">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_035990_3_0_4"/>
    <dbReference type="OMA" id="WGIYRED"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008233">
        <property type="term" value="F:peptidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003697">
        <property type="term" value="F:single-stranded DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006974">
        <property type="term" value="P:cellular response to DNA damage stimulus"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0018142">
        <property type="term" value="P:protein-DNA covalent cross-linking"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006508">
        <property type="term" value="P:proteolysis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.1680.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003738">
        <property type="entry name" value="SRAP"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036590">
        <property type="entry name" value="SRAP-like"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02586">
        <property type="entry name" value="SRAP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF143081">
        <property type="entry name" value="SSF143081"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-0190">Covalent protein-DNA linkage</keyword>
    <keyword evidence="3" id="KW-0227">DNA damage</keyword>
    <keyword evidence="6" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="4" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="2" id="KW-0645">Protease</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="7">
        <location>
            <begin position="1"/>
            <end position="25"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="7">
        <location>
            <begin position="157"/>
            <end position="179"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00008136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022670"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022763"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023124"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="ABX36704.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="179" mass="19836" checksum="17939F0465E3ECAD" modified="2008-01-15" version="1">MIPRSSKTRRPMTADGKPMSTNNARRETLAKSWTFAPAWRAGQRCLIPVESWVEPYWGLGSRNVWWSFRRADGQPAALAGLYSEWVDPATGEVVPNYTMITQPADGHPVLALMHRPGKEKRGVVMLEPGDWDAWLHGTAAQADELIKLPAPGVLRSGAEKPEEEALLPAEQLQALRAET</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-01-19" version="36" xmlns="http://uniprot.org/uniprot">
    <accession>A9C0E3</accession>
    <name>A9C0E3_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_4078</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX36709.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012205903.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_4078"/>
    <dbReference type="EnsemblBacteria" id="ABX36709">
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        <property type="gene ID" value="Daci_4078"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_4078"/>
    <dbReference type="eggNOG" id="ENOG502ZMZ2">
        <property type="taxonomic scope" value="Bacteria"/>
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    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="22"/>
            <end position="44"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="56"/>
            <end position="81"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX36709.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="132" mass="13711" checksum="15B91C0C25B7A197" modified="2008-01-15" version="1">MNQLEPTNVAIALASVLFGPTLAALVGPYAVILIASTVGAAWALGRRDPSARLGAAGYFLRLNVTALLVTVGLATLAGRWLGFDETNWMLAPIALVVGGVGDDWPRLGRWVFERAGRVLERKAGGGGEGGTP</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="55" xmlns="http://uniprot.org/uniprot">
    <accession>A9C0E9</accession>
    <name>A9C0E9_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Phage tail tape measure protein, lambda family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ordered locus">Daci_4084</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
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                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="5" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX36715.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012205907.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_4084"/>
    <dbReference type="PRIDE" id="A9C0E9"/>
    <dbReference type="EnsemblBacteria" id="ABX36715">
        <property type="protein sequence ID" value="ABX36715"/>
        <property type="gene ID" value="Daci_4084"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_4084"/>
    <dbReference type="eggNOG" id="COG1196">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
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        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_008821_0_0_4"/>
    <dbReference type="OMA" id="YRTMQNG"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006431">
        <property type="entry name" value="Phage_tape_meas_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013491">
        <property type="entry name" value="Tape_meas_N"/>
    </dbReference>
    <dbReference type="Pfam" id="PF09718">
        <property type="entry name" value="Tape_meas_lam_C"/>
        <property type="match status" value="1"/>
    </dbReference>
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        <property type="entry name" value="TMP_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01541">
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        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR02675">
        <property type="entry name" value="tape_meas_nterm"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="TMP_3" evidence="3">
        <location>
            <begin position="230"/>
            <end position="419"/>
        </location>
    </feature>
    <feature type="domain" description="Tape_meas_lam_C" evidence="2">
        <location>
            <begin position="1020"/>
            <end position="1094"/>
        </location>
    </feature>
    <feature type="coiled-coil region" evidence="1">
        <location>
            <begin position="847"/>
            <end position="1003"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF09718"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF20155"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="ABX36715.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="1251" mass="130702" checksum="7C576712788D3D3C" modified="2008-01-15" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="55" xmlns="http://uniprot.org/uniprot">
    <accession>A9C0G2</accession>
    <name>A9C0G2_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
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    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
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            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
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                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
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            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX36728.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012205920.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_4097"/>
    <dbReference type="PRIDE" id="A9C0G2"/>
    <dbReference type="EnsemblBacteria" id="ABX36728">
        <property type="protein sequence ID" value="ABX36728"/>
        <property type="gene ID" value="Daci_4097"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_4097"/>
    <dbReference type="eggNOG" id="COG3566">
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    </dbReference>
    <dbReference type="HOGENOM" id="CLU_049293_1_0_4"/>
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    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
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    </dbReference>
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        <property type="match status" value="1"/>
    </dbReference>
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        <property type="entry name" value="UCP029215"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
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        <location>
            <begin position="225"/>
            <end position="267"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX36728.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="378" mass="40463" checksum="EC843BE7C2B1B9C5" modified="2008-01-15" version="1">MNVKFADRVAVGELKETREGYLVATARVARTGVQLYYASELGDVARDAGFKPGDVVRVYRHADEVFAKDSLASITRLPVTVDHPAEEVTAANWQQLAVGEVGDAYATEPEWIVVNPMIKDAGATKAARTTHQEISMGYSAAIVPARDGLEADFEQRGIRYNHLALVPKGRAGEMARIGDSWGASPVQDFQPGISPKSKGGLMPDMKTVVLGDKAVQVADTDVALIEQYKTDMARKLADAETAKKKSDEEKDEEIGKLKAEVKKAKDAAVIDVDKLVADRTELVGLVKTMDASIDPKGKSDAELRKAAVLAKLGDSIVKDASDAEITGMFKALANDAATMNPVATALRQGVVNVGDAQTQADKALATANADLNAWRTKQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="68" xmlns="http://uniprot.org/uniprot">
    <accession>A9C0H2</accession>
    <name>A9C0H2_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="9">Methyl-accepting chemotaxis sensory transducer</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="9" type="ordered locus">Daci_4414</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
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        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="9 10" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
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                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
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            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="10" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX37045.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012206217.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_4414"/>
    <dbReference type="PRIDE" id="A9C0H2"/>
    <dbReference type="EnsemblBacteria" id="ABX37045">
        <property type="protein sequence ID" value="ABX37045"/>
        <property type="gene ID" value="Daci_4414"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_4414"/>
    <dbReference type="eggNOG" id="COG0840">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="eggNOG" id="COG4564">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_000445_107_16_4"/>
    <dbReference type="OMA" id="NDVNYVH"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004888">
        <property type="term" value="F:transmembrane signaling receptor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006935">
        <property type="term" value="P:chemotaxis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0007165">
        <property type="term" value="P:signal transduction"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004090">
        <property type="entry name" value="Chemotax_Me-accpt_rcpt"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004091">
        <property type="entry name" value="Chemotax_Me-accpt_rcpt_Me-site"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004089">
        <property type="entry name" value="MCPsignal_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR033480">
        <property type="entry name" value="sCache_2"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00015">
        <property type="entry name" value="MCPsignal"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF17200">
        <property type="entry name" value="sCache_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00260">
        <property type="entry name" value="CHEMTRNSDUCR"/>
    </dbReference>
    <dbReference type="SMART" id="SM01049">
        <property type="entry name" value="Cache_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00283">
        <property type="entry name" value="MA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00538">
        <property type="entry name" value="CHEMOTAXIS_TRANSDUC_1"/>
        <property type="match status" value="1"/>
    </dbReference>
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        <property type="entry name" value="CHEMOTAXIS_TRANSDUC_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="5 7" id="KW-0472">Membrane</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="6" id="KW-0807">Transducer</keyword>
    <keyword evidence="3 7" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="4 7" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="189"/>
            <end position="210"/>
        </location>
    </feature>
    <feature type="domain" description="Methyl-accepting transducer" evidence="8">
        <location>
            <begin position="274"/>
            <end position="503"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00284"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="PROSITE" id="PS50111"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="ABX37045.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="518" mass="54401" checksum="E1FA8588A6A55D56" modified="2008-01-15" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="58" xmlns="http://uniprot.org/uniprot">
    <accession>A9C0X7</accession>
    <name>A9C0X7_DELAS</name>
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        <submittedName>
            <fullName evidence="11">TonB family protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="11" type="ordered locus">Daci_5812</name>
    </gene>
    <organism evidence="11 12">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="11 12" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="12">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="12" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="12">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Cell inner membrane</location>
            <topology evidence="1">Single-pass membrane protein</topology>
            <orientation evidence="1">Periplasmic side</orientation>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the TonB family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX38440.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012207609.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_5812"/>
    <dbReference type="PRIDE" id="A9C0X7"/>
    <dbReference type="EnsemblBacteria" id="ABX38440">
        <property type="protein sequence ID" value="ABX38440"/>
        <property type="gene ID" value="Daci_5812"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_5812"/>
    <dbReference type="eggNOG" id="COG0810">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_076057_6_0_4"/>
    <dbReference type="OMA" id="YSPQLAC"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0055085">
        <property type="term" value="P:transmembrane transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006260">
        <property type="entry name" value="TonB/TolA_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037682">
        <property type="entry name" value="TonB_C"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03544">
        <property type="entry name" value="TonB_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01352">
        <property type="entry name" value="tonB_Cterm"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-0997">Cell inner membrane</keyword>
    <keyword evidence="4" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="8" id="KW-0472">Membrane</keyword>
    <keyword evidence="12" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="9" id="KW-0732">Signal</keyword>
    <keyword evidence="6" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="7" id="KW-1133">Transmembrane helix</keyword>
    <keyword evidence="3" id="KW-0813">Transport</keyword>
    <feature type="signal peptide" evidence="9">
        <location>
            <begin position="1"/>
            <end position="23"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5002733245" evidence="9">
        <location>
            <begin position="24"/>
            <end position="117"/>
        </location>
    </feature>
    <feature type="domain" description="TonB_C" evidence="10">
        <location>
            <begin position="40"/>
            <end position="114"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004383"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00006555"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022448"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022519"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="10">
        <source>
            <dbReference type="Pfam" id="PF03544"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="EMBL" id="ABX38440.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="117" mass="12554" checksum="2F5E11595E783D4C" modified="2008-01-15" version="1">MPRMRCAILALTLGLLAGGPAAAGVVQPVPDRQASENKMPAYPKEARRLEQEGKVVLRVLVGASGKALAVDVADSSGYPLLDQEALDAVRTWRFVPGTRDGVPDSMWTRVPVTFLLK</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="91" xmlns="http://uniprot.org/uniprot">
    <accession>A9C1C0</accession>
    <name>A9C1C0_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="7">General substrate transporter</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ordered locus">Daci_5955</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="8" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX38583.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012207752.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_5955"/>
    <dbReference type="PRIDE" id="A9C1C0"/>
    <dbReference type="EnsemblBacteria" id="ABX38583">
        <property type="protein sequence ID" value="ABX38583"/>
        <property type="gene ID" value="Daci_5955"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_5955"/>
    <dbReference type="eggNOG" id="COG0477">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_001265_39_2_4"/>
    <dbReference type="OMA" id="LWYPIVF"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0022857">
        <property type="term" value="F:transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.1250.20">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020846">
        <property type="entry name" value="MFS_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005828">
        <property type="entry name" value="MFS_sugar_transport-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036259">
        <property type="entry name" value="MFS_trans_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005829">
        <property type="entry name" value="Sugar_transporter_CS"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00083">
        <property type="entry name" value="Sugar_tr"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF103473">
        <property type="entry name" value="SSF103473"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50850">
        <property type="entry name" value="MFS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00217">
        <property type="entry name" value="SUGAR_TRANSPORT_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4 5" id="KW-0472">Membrane</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 5" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="3 5" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="25"/>
            <end position="51"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="63"/>
            <end position="84"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="96"/>
            <end position="115"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="163"/>
            <end position="185"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="197"/>
            <end position="220"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="252"/>
            <end position="270"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="290"/>
            <end position="308"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="320"/>
            <end position="339"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="460"/>
            <end position="485"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="506"/>
            <end position="524"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="530"/>
            <end position="548"/>
        </location>
    </feature>
    <feature type="domain" description="MFS" evidence="6">
        <location>
            <begin position="25"/>
            <end position="552"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="PROSITE" id="PS50850"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="ABX38583.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="560" mass="60199" checksum="53851E0603D09D45" modified="2008-01-15" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="79" xmlns="http://uniprot.org/uniprot">
    <accession>A9C1J2</accession>
    <name>A9C1J2_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="8">ABC transporter related</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="8" type="ordered locus">Daci_6027</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="9" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX38655.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012207824.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_6027"/>
    <dbReference type="PRIDE" id="A9C1J2"/>
    <dbReference type="EnsemblBacteria" id="ABX38655">
        <property type="protein sequence ID" value="ABX38655"/>
        <property type="gene ID" value="Daci_6027"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_6027"/>
    <dbReference type="eggNOG" id="COG0410">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_000604_1_2_4"/>
    <dbReference type="OMA" id="YITIVGP"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003593">
        <property type="entry name" value="AAA+_ATPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003439">
        <property type="entry name" value="ABC_transporter-like_ATP-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017871">
        <property type="entry name" value="ABC_transporter-like_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00005">
        <property type="entry name" value="ABC_tran"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00382">
        <property type="entry name" value="AAA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00211">
        <property type="entry name" value="ABC_TRANSPORTER_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50893">
        <property type="entry name" value="ABC_TRANSPORTER_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3 6" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="1" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="5" id="KW-0472">Membrane</keyword>
    <keyword evidence="2 6" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4" id="KW-1278">Translocase</keyword>
    <feature type="domain" description="ABC transporter" evidence="7">
        <location>
            <begin position="6"/>
            <end position="233"/>
        </location>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <begin position="38"/>
            <end position="45"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022967"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00434"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="PROSITE" id="PS50893"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="ABX38655.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="236" mass="25480" checksum="A7EBA3D10306BD6D" modified="2008-01-15" version="1">MSGPLLSVEGIHAHYGKSHVLQGVSLQVQDGELVTLLGRNGAGKTTTLKSIAGVMQPSQGQIRFGGEPVHRLATHQVAQRGICLVPEHRGIFKLLTVEENLLLGQRKRSPWQLADIYRIFPRLKERRGNGGGQLSGGEQQMLAIGRALMNAPRLLMLDEPVEGLAPVIVEEIVAQLKTIKAAGVAILLVEQNLEVCTQLADRHYIIEQGAIAHEAGNAAFLSDDAIKDRYLGVGIA</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="56" xmlns="http://uniprot.org/uniprot">
    <accession>A9C1L9</accession>
    <name>A9C1L9_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Cyclic nucleotide-binding protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_6054</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX38682.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012207851.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_6054"/>
    <dbReference type="PRIDE" id="A9C1L9"/>
    <dbReference type="EnsemblBacteria" id="ABX38682">
        <property type="protein sequence ID" value="ABX38682"/>
        <property type="gene ID" value="Daci_6054"/>
    </dbReference>
    <dbReference type="GeneID" id="60690414"/>
    <dbReference type="KEGG" id="dac:Daci_6054"/>
    <dbReference type="eggNOG" id="COG0664">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_142715_0_0_4"/>
    <dbReference type="OMA" id="EGAFFAH"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="CDD" id="cd00038">
        <property type="entry name" value="CAP_ED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.120.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018490">
        <property type="entry name" value="cNMP-bd-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000595">
        <property type="entry name" value="cNMP-bd_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014710">
        <property type="entry name" value="RmlC-like_jellyroll"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00027">
        <property type="entry name" value="cNMP_binding"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00100">
        <property type="entry name" value="cNMP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51206">
        <property type="entry name" value="SSF51206"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50042">
        <property type="entry name" value="CNMP_BINDING_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Cyclic nucleotide-binding" evidence="1">
        <location>
            <begin position="25"/>
            <end position="126"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS50042"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX38682.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="159" mass="17012" checksum="BBABE8892052A5A6" modified="2008-01-15" version="1">MSSSSHNDLRPLAQAMSSAVAVDGVQNALTLEQWDLLAPYLVPVTLAAGELLFAEGSLDRNLYFVESGSLSVHYQDAKERIRLAIVGPGSILGEGAFFAHRARHATVQAAAPGRLWCLTAMRFAELSNRQPGVALALVMAAGQVLARRAVDSRRRVAST</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-01-19" version="55" xmlns="http://uniprot.org/uniprot">
    <accession>A9C1N6</accession>
    <name>A9C1N6_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Transcriptional activator Ogr/delta</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Daci_2583</name>
        <name evidence="4" type="ordered locus">Daci_2617</name>
    </gene>
    <organism evidence="3 5">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 5" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">DSM 14801 / SPH-1</strain>
            <strain evidence="3">SPH-1</strain>
        </source>
    </reference>
    <reference evidence="5" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="3">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="3">SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX35221.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX35255.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_2583"/>
    <dbReference type="EnsemblBacteria" id="ABX35221">
        <property type="protein sequence ID" value="ABX35221"/>
        <property type="gene ID" value="Daci_2583"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="ABX35255">
        <property type="protein sequence ID" value="ABX35255"/>
        <property type="gene ID" value="Daci_2617"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_2583"/>
    <dbReference type="KEGG" id="dac:Daci_2617"/>
    <dbReference type="eggNOG" id="ENOG5033AEK">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_170894_1_1_4"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007684">
        <property type="entry name" value="Znf_Ogr/Delta"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04606">
        <property type="entry name" value="Ogr_Delta"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Ogr_Delta" evidence="2">
        <location>
            <begin position="4"/>
            <end position="50"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="83"/>
            <end position="107"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF04606"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ABX35221.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="ABX35255.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="107" mass="11853" checksum="499FF23A2AA78DC1" modified="2008-01-15" version="1">MRMMCPHCNEHAYTRTSLQLTSTSRETIFQCRNFECGHVFSAVTEINRTISPSAIPNPMVILPMSTHIKRKLLQTQLDAMPSSQYEGAAHRAAQAAESAQSSEGARS</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-01-19" version="33" xmlns="http://uniprot.org/uniprot">
    <accession>A9C1P8</accession>
    <name>A9C1P8_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Daci_2595</name>
        <name evidence="2" type="ordered locus">Daci_2629</name>
    </gene>
    <organism evidence="1 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
            <strain evidence="1">SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="1" key="3">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX35233.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX35267.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012204512.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_2595"/>
    <dbReference type="EnsemblBacteria" id="ABX35233">
        <property type="protein sequence ID" value="ABX35233"/>
        <property type="gene ID" value="Daci_2595"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="ABX35267">
        <property type="protein sequence ID" value="ABX35267"/>
        <property type="gene ID" value="Daci_2629"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_2595"/>
    <dbReference type="KEGG" id="dac:Daci_2629"/>
    <dbReference type="HOGENOM" id="CLU_2355108_0_0_4"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ABX35233.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX35267.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="96" mass="10310" checksum="9AB13168F9224FFB" modified="2008-01-15" version="1">MSKQDLHFALIKADRVHNIIVADEEFIAELQTRQPSLWDSIEPVAGDCAIGSVRTGTGWQISTEDQAPAPINTPITEPDELAAGRVSAVNATEVQG</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="81" xmlns="http://uniprot.org/uniprot">
    <accession>A9C1X7</accession>
    <name>A9C1X7_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="7">Binding-protein-dependent transport systems inner membrane component</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ordered locus">Daci_2975</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="8" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="5">Cell membrane</location>
            <topology evidence="5">Multi-pass membrane protein</topology>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="5">Belongs to the binding-protein-dependent transport system permease family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX35613.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_2975"/>
    <dbReference type="PRIDE" id="A9C1X7"/>
    <dbReference type="EnsemblBacteria" id="ABX35613">
        <property type="protein sequence ID" value="ABX35613"/>
        <property type="gene ID" value="Daci_2975"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_2975"/>
    <dbReference type="eggNOG" id="COG4239">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_028518_1_0_4"/>
    <dbReference type="OMA" id="PSPPTWM"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0055085">
        <property type="term" value="P:transmembrane transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd06261">
        <property type="entry name" value="TM_PBP2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.3720.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000515">
        <property type="entry name" value="MetI-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035906">
        <property type="entry name" value="MetI-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025966">
        <property type="entry name" value="OppC_N"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00528">
        <property type="entry name" value="BPD_transp_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12911">
        <property type="entry name" value="OppC_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF161098">
        <property type="entry name" value="SSF161098"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50928">
        <property type="entry name" value="ABC_TM1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4 5" id="KW-0472">Membrane</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 5" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="3 5" id="KW-1133">Transmembrane helix</keyword>
    <keyword evidence="5" id="KW-0813">Transport</keyword>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="43"/>
            <end position="64"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="168"/>
            <end position="192"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="213"/>
            <end position="238"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="289"/>
            <end position="310"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="330"/>
            <end position="352"/>
        </location>
    </feature>
    <feature type="domain" description="ABC transmembrane type-1" evidence="6">
        <location>
            <begin position="164"/>
            <end position="352"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="RuleBase" id="RU363032"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="PROSITE" id="PS50928"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="ABX35613.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="379" mass="41352" checksum="D5FDC379CCE6BA82" modified="2008-01-15" version="1">METEMHSLAAPGAGLPGAAPAPLAVVAVSPARRAWMRFRRNRLGYWSLVAFCVMVVLSLGAELISNDRPLVVRYEGQTYWPLWNDYSEKTFGGDFETATDYLDPFIRDRLRQGDNWALYTLNPYGPQALNYFATSPNPAPPSRDNLLGTDDRGRDLLAQLIYGFRVSVLFALALTASGVVLGVVTGAVQGFFGGRTDLAFQRFIEIWGSMPELYLLIIFSAVLAPSVSLLLVLLSLFGWMGLSDYVRAEFLRNRQLDYVKSARALGVGNGALIWRHLLPNSMTPVVTFLPFRMSAAILALTSLDFLGLGVPPDTPSLGELLNQGKNSIDAWWISLSTFAVLVVTLLLLTFMGDALRDALDPRKAAASDAAPGVDAKDAA</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-05-25" version="50" xmlns="http://uniprot.org/uniprot">
    <accession>A9C234</accession>
    <name>A9C234_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Daci_3032</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="2" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX35670.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012204876.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_3032"/>
    <dbReference type="EnsemblBacteria" id="ABX35670">
        <property type="protein sequence ID" value="ABX35670"/>
        <property type="gene ID" value="Daci_3032"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_3032"/>
    <dbReference type="eggNOG" id="COG3342">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_068244_1_1_4"/>
    <dbReference type="OMA" id="PVADLRC"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.60.20.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010430">
        <property type="entry name" value="DUF1028"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029055">
        <property type="entry name" value="Ntn_hydrolases_N"/>
    </dbReference>
    <dbReference type="Pfam" id="PF06267">
        <property type="entry name" value="DUF1028"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56235">
        <property type="entry name" value="SSF56235"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ABX35670.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="225" mass="23536" checksum="CE8D8EA3F079C9C2" modified="2008-01-15" version="1">MTFSIVGRCERTGQLGVAISSSSIAVGARCPWVRAGVGVVSTQNITLPALGPRVLDLLEQGADPQAALRQALDDGSWPQYRQVTVVDAQGRTGVFSGSQALGIFTSAVGRQCVAAGNLLASERTIEAMVPAFERSADLPLAERLLAAMQAAMAAGGEAGPVHSAALKVAGEHSWPMADLRVDWSEHDPIGALQGLWAAYAPQMQDYQTRAIDPRAAPSYGVPGDE</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-05-25" version="60" xmlns="http://uniprot.org/uniprot">
    <accession>A9C245</accession>
    <name>A9C245_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Putative mRNA 3-end processing factor</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_3043</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX35681.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012204887.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_3043"/>
    <dbReference type="EnsemblBacteria" id="ABX35681">
        <property type="protein sequence ID" value="ABX35681"/>
        <property type="gene ID" value="Daci_3043"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_3043"/>
    <dbReference type="eggNOG" id="COG1236">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_050517_1_0_4"/>
    <dbReference type="OMA" id="FYIDPWR"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.60.15.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036866">
        <property type="entry name" value="RibonucZ/Hydroxyglut_hydro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR026360">
        <property type="entry name" value="Xnuc_lig_assoc"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56281">
        <property type="entry name" value="SSF56281"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR04122">
        <property type="entry name" value="Xnuc_lig_assoc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="326"/>
            <end position="346"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX35681.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="346" mass="37673" checksum="A6168B0B8995187D" modified="2008-01-15" version="1">MAADLIVARPEGLYCAAGDFYIDPWRPVDRAVITHGHSDHARAGHAHYLAHDDSEGVLRARLGADITLQTLPYGEAIDHHGVRISLHPAGHVLGSAQVRLEHGGQVWVASGDYKTEADGTCTPFEPVRCDTFITESTFGLPIYRWPRQPELMADINAWWQANAAQGRPSVLLCYAFGKAQRILHGVDRRIGPIVVHGAVEPLNAVYRAAGVDLPPTLRVTDPGVDAQRLKTALVLAPPSAQGTPWMRRFPGHADAFASGWMQLRGTRRRRGVDRGFVMSDHADWPGLQYAIGATGAERVFVTHGSVAVLVRWLREQGLDAQAFQTEYGDEDEAAAAQAAPDETPAP</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="64" xmlns="http://uniprot.org/uniprot">
    <accession>A9C290</accession>
    <name>A9C290_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Cell division coordinator CpoB</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="1" type="primary">cpoB</name>
        <name evidence="5" type="ordered locus">Daci_3396</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="6" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="1">Mediates coordination of peptidoglycan synthesis and outer membrane constriction during cell division.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Periplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="1">Belongs to the CpoB family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX36034.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012205234.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_3396"/>
    <dbReference type="PRIDE" id="A9C290"/>
    <dbReference type="EnsemblBacteria" id="ABX36034">
        <property type="protein sequence ID" value="ABX36034"/>
        <property type="gene ID" value="Daci_3396"/>
    </dbReference>
    <dbReference type="GeneID" id="60687648"/>
    <dbReference type="KEGG" id="dac:Daci_3396"/>
    <dbReference type="eggNOG" id="COG1729">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_044315_1_0_4"/>
    <dbReference type="OMA" id="QFWLGNA"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030288">
        <property type="term" value="C:outer membrane-bounded periplasmic space"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043093">
        <property type="term" value="P:FtsZ-dependent cytokinesis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0070206">
        <property type="term" value="P:protein trimerization"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.25.40.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_02066">
        <property type="entry name" value="CpoB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR039565">
        <property type="entry name" value="BamD-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR034706">
        <property type="entry name" value="CpoB"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014162">
        <property type="entry name" value="CpoB_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011990">
        <property type="entry name" value="TPR-like_helical_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR032519">
        <property type="entry name" value="YbgF_tri"/>
    </dbReference>
    <dbReference type="Pfam" id="PF16331">
        <property type="entry name" value="TolA_bind_tri"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13525">
        <property type="entry name" value="YfiO"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48452">
        <property type="entry name" value="SSF48452"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR02795">
        <property type="entry name" value="tol_pal_ybgF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="1" id="KW-0131">Cell cycle</keyword>
    <keyword evidence="1" id="KW-0132">Cell division</keyword>
    <keyword evidence="1" id="KW-0574">Periplasm</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="1">
        <location>
            <begin position="1"/>
            <end position="32"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5009990733" description="Cell division coordinator CpoB" evidence="1">
        <location>
            <begin position="33"/>
            <end position="260"/>
        </location>
    </feature>
    <feature type="domain" description="TolA_bind_tri" evidence="4">
        <location>
            <begin position="63"/>
            <end position="123"/>
        </location>
    </feature>
    <feature type="domain" description="YfiO" evidence="3">
        <location>
            <begin position="141"/>
            <end position="260"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="50"/>
            <end position="69"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_02066"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF13525"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="Pfam" id="PF16331"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="ABX36034.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="260" mass="28844" checksum="E5B943309E6F5DE1" modified="2008-01-15" version="1" precursor="true">MNMQRSPILHRTALRTLLAAGLMAGYAASGHAALFGDDEARRAILEMRQRVDSMQQSQQRMTEESSQTRRGLLELQSQIEQLKSEQAKLRGQNEQLLRDVAELQRGQRDIAKGVDERLRQFEPVTVTVDGQEFAADPAEKRDFEAALAQFRAGSFAEAGTAFSSFLNQWPKSGYVPSARFWLGNAQYANRNYKDAITNFRALLAAAPMHGRAPEAALSIANCQIEMKDTKGARKTLEDLIKAYPNAEATAAAKNRLASLK</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-01-19" version="54" xmlns="http://uniprot.org/uniprot">
    <accession>A9C2A2</accession>
    <name>A9C2A2_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Endodeoxyribonuclease</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_3408</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX36046.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012205246.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_3408"/>
    <dbReference type="EnsemblBacteria" id="ABX36046">
        <property type="protein sequence ID" value="ABX36046"/>
        <property type="gene ID" value="Daci_3408"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_3408"/>
    <dbReference type="eggNOG" id="COG0847">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_094039_1_0_4"/>
    <dbReference type="OMA" id="DAKHQAR"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003676">
        <property type="term" value="F:nucleic acid binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.420.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012337">
        <property type="entry name" value="RNaseH-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036397">
        <property type="entry name" value="RNaseH_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR033390">
        <property type="entry name" value="Rv2179c-like"/>
    </dbReference>
    <dbReference type="Pfam" id="PF16473">
        <property type="entry name" value="DUF5051"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53098">
        <property type="entry name" value="SSF53098"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="DUF5051" evidence="1">
        <location>
            <begin position="6"/>
            <end position="172"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF16473"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX36046.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="188" mass="20743" checksum="D71417EEB1BB80D9" modified="2008-01-15" version="1">MTQFFDLMIDTETMGLPPAGALLSIGAVFFDLHTQTLGPTFNRTINLASSVKHGGTIDAGTVLWWLRQGDEARKAVAYGGEPIDLVLADFAAWIAQTCRHDDVRPWGNSSTFDLTIVGGAFQRLGLKAPWYFTNERDFRTVRNMFPHIEYDPGEKGTGAHNALADAQFQVAHLFKIKNRNSAVQSTGQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="64" xmlns="http://uniprot.org/uniprot">
    <accession>A9C2H2</accession>
    <name>A9C2H2_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Peptidase S45 penicillin amidase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ordered locus">Daci_3480</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="6" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the peptidase S45 family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX36116.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012205316.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_3480"/>
    <dbReference type="MEROPS" id="S45.004"/>
    <dbReference type="PRIDE" id="A9C2H2"/>
    <dbReference type="EnsemblBacteria" id="ABX36116">
        <property type="protein sequence ID" value="ABX36116"/>
        <property type="gene ID" value="Daci_3480"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_3480"/>
    <dbReference type="eggNOG" id="COG2366">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_017615_0_0_4"/>
    <dbReference type="OMA" id="QGIPWVN"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016811">
        <property type="term" value="F:hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0017000">
        <property type="term" value="P:antibiotic biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.1400.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.439.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.30.120.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.60.20.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029055">
        <property type="entry name" value="Ntn_hydrolases_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043147">
        <property type="entry name" value="Penicillin_amidase_A-knob"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023343">
        <property type="entry name" value="Penicillin_amidase_dom1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043146">
        <property type="entry name" value="Penicillin_amidase_N_B-knob"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002692">
        <property type="entry name" value="S45"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR34218">
        <property type="entry name" value="PTHR34218"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01804">
        <property type="entry name" value="Penicil_amidase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56235">
        <property type="entry name" value="SSF56235"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4" id="KW-0732">Signal</keyword>
    <keyword evidence="3" id="KW-0865">Zymogen</keyword>
    <feature type="signal peptide" evidence="4">
        <location>
            <begin position="1"/>
            <end position="21"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5002736098" evidence="4">
        <location>
            <begin position="22"/>
            <end position="816"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00006586"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023145"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="ABX36116.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="816" mass="86864" checksum="97B6063DF69925FB" modified="2008-01-15" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-05-25" version="56" xmlns="http://uniprot.org/uniprot">
    <accession>A9C2K1</accession>
    <name>A9C2K1_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Acetyltransferase</fullName>
            <ecNumber evidence="1">2.3.1.-</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_3718</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the transferase hexapeptide repeat family.</text>
    </comment>
    <dbReference type="EC" id="2.3.1.-" evidence="1"/>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX36350.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012205546.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_3718"/>
    <dbReference type="EnsemblBacteria" id="ABX36350">
        <property type="protein sequence ID" value="ABX36350"/>
        <property type="gene ID" value="Daci_3718"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_3718"/>
    <dbReference type="eggNOG" id="COG0110">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_051638_7_5_4"/>
    <dbReference type="OMA" id="SANQESW"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016407">
        <property type="term" value="F:acetyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001451">
        <property type="entry name" value="Hexapep"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR039369">
        <property type="entry name" value="LacA-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011004">
        <property type="entry name" value="Trimer_LpxA-like_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43017">
        <property type="entry name" value="PTHR43017"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00132">
        <property type="entry name" value="Hexapep"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51161">
        <property type="entry name" value="SSF51161"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="1" id="KW-0012">Acyltransferase</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1 2" id="KW-0808">Transferase</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="RuleBase" id="RU367021"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX36350.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="114" mass="11497" checksum="49BE55D24AA70FE8" modified="2008-01-15" version="1">MLDTGGIHIGNDVLRARGVGIYTPNHSVHAAESAAGGCFPRQVRIASRVWIGTGCHLNPGVTIGDVSIIGSGSVVKKDIPPGVIAAGAPCRVGHAITDGTAKSSDGQTAFCRPA</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="68" xmlns="http://uniprot.org/uniprot">
    <accession>A9C2R6</accession>
    <name>A9C2R6_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Gamma-glutamyltransferase</fullName>
            <ecNumber evidence="1">2.3.2.2</ecNumber>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Daci_3783</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="2" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EC" id="2.3.2.2" evidence="1"/>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX36415.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012205609.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="SMR" id="A9C2R6"/>
    <dbReference type="STRING" id="398578.Daci_3783"/>
    <dbReference type="MEROPS" id="T03.025"/>
    <dbReference type="PRIDE" id="A9C2R6"/>
    <dbReference type="EnsemblBacteria" id="ABX36415">
        <property type="protein sequence ID" value="ABX36415"/>
        <property type="gene ID" value="Daci_3783"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_3783"/>
    <dbReference type="eggNOG" id="COG0405">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_014813_3_2_4"/>
    <dbReference type="OMA" id="DGQVQWN"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0102953">
        <property type="term" value="F:hypoglycin A gamma-glutamyl transpeptidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0103068">
        <property type="term" value="F:leukotriene C4 gamma-glutamyl transferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.60.20.40">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043137">
        <property type="entry name" value="GGT_ssub"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029055">
        <property type="entry name" value="Ntn_hydrolases_N"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56235">
        <property type="entry name" value="SSF56235"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0012">Acyltransferase</keyword>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0808">Transferase</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ABX36415.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="533" mass="57171" checksum="A03C1EAC7DA55B16" modified="2008-01-15" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="85" xmlns="http://uniprot.org/uniprot">
    <accession>A9C2R7</accession>
    <name>A9C2R7_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Transcriptional regulator, GntR family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ordered locus">Daci_3784</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="6" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX36416.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012205610.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_3784"/>
    <dbReference type="PRIDE" id="A9C2R7"/>
    <dbReference type="EnsemblBacteria" id="ABX36416">
        <property type="protein sequence ID" value="ABX36416"/>
        <property type="gene ID" value="Daci_3784"/>
    </dbReference>
    <dbReference type="GeneID" id="60688010"/>
    <dbReference type="KEGG" id="dac:Daci_3784"/>
    <dbReference type="eggNOG" id="COG1802">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_017584_5_3_4"/>
    <dbReference type="OMA" id="HIGASKR"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003700">
        <property type="term" value="F:DNA-binding transcription factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd07377">
        <property type="entry name" value="WHTH_GntR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.120.530">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011711">
        <property type="entry name" value="GntR_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008920">
        <property type="entry name" value="TF_FadR/GntR_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000524">
        <property type="entry name" value="Tscrpt_reg_HTH_GntR"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036390">
        <property type="entry name" value="WH_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07729">
        <property type="entry name" value="FCD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00392">
        <property type="entry name" value="GntR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00895">
        <property type="entry name" value="FCD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00345">
        <property type="entry name" value="HTH_GNTR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46785">
        <property type="entry name" value="SSF46785"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48008">
        <property type="entry name" value="SSF48008"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50949">
        <property type="entry name" value="HTH_GNTR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0804">Transcription</keyword>
    <keyword evidence="1" id="KW-0805">Transcription regulation</keyword>
    <feature type="domain" description="HTH gntR-type" evidence="4">
        <location>
            <begin position="14"/>
            <end position="81"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023015"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023163"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="PROSITE" id="PS50949"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="ABX36416.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="222" mass="24913" checksum="42316FE505CFBD89" modified="2008-01-15" version="1">MLTDRRASFDTVHATAQEEAYQHIKRGIRTGELRPGMRLAPDDIAAEIGTSRMPVREALNRLATEGLIVNRPNRGSVVRVLTEKEVREVFAMRSVLEGLAATLAAENVTTNDIHDLEQLLQRMHRSGLNASEWITAHRQFHERLCTIADAPQLMRQIASLHSVSEPLMRVWLEGKPSTDYVHDRHEELIGALKARDGAKVEALMRAHILRTLPGILQANQAD</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="38" xmlns="http://uniprot.org/uniprot">
    <accession>A9C2U2</accession>
    <name>A9C2U2_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Daci_4115</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="2" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX36746.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012205936.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_4115"/>
    <dbReference type="PRIDE" id="A9C2U2"/>
    <dbReference type="EnsemblBacteria" id="ABX36746">
        <property type="protein sequence ID" value="ABX36746"/>
        <property type="gene ID" value="Daci_4115"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_4115"/>
    <dbReference type="eggNOG" id="ENOG5033C7A">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_1980769_0_0_4"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ABX36746.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="143" mass="14974" checksum="8AC10FDFBDBF80B8" modified="2008-01-15" version="1">MKKVLITALVVALCGCAPTPYRTAVDDLSDASLNEVIAYSNEIKDFLYSGGNEIEAIELGKKAVLHVLKDPDSAKFRDVRLKAYFDGAVVCGQVNAKNSYGGYAGFKSFVAGIKGATLRDESSRYATVNAASNTGIGAACPGG</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="57" xmlns="http://uniprot.org/uniprot">
    <accession>A9C353</accession>
    <name>A9C353_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">zf-TFIIB domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Daci_4535</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="4" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX37164.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012206334.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="PRIDE" id="A9C353"/>
    <dbReference type="EnsemblBacteria" id="ABX37164">
        <property type="protein sequence ID" value="ABX37164"/>
        <property type="gene ID" value="Daci_4535"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_4535"/>
    <dbReference type="eggNOG" id="COG3809">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_147819_0_1_4"/>
    <dbReference type="OMA" id="KSIWHEL"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027392">
        <property type="entry name" value="TF_Znf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13453">
        <property type="entry name" value="zf-TFIIB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="zf-TFIIB" evidence="2">
        <location>
            <begin position="2"/>
            <end position="43"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="44"/>
            <end position="83"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="59"/>
            <end position="83"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF13453"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ABX37164.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="95" mass="10962" checksum="72225CC524E53663" modified="2008-01-15" version="1">MQCPACRDATLIISERQNIEIDYCPQCRGVWLDRGELDKLIERSAAQAPTAPAAYERPQERRAGPDGSHDRREHSSHDGYRRKKREGFLSDLFDF</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="58" xmlns="http://uniprot.org/uniprot">
    <accession>A9C3A0</accession>
    <name>A9C3A0_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Periplasmic binding protein/LacI transcriptional regulator</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Daci_4582</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="4" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX37211.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012206381.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_4582"/>
    <dbReference type="PRIDE" id="A9C3A0"/>
    <dbReference type="EnsemblBacteria" id="ABX37211">
        <property type="protein sequence ID" value="ABX37211"/>
        <property type="gene ID" value="Daci_4582"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_4582"/>
    <dbReference type="eggNOG" id="COG1879">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_037628_3_2_4"/>
    <dbReference type="OMA" id="IAVLMYG"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0042597">
        <property type="term" value="C:periplasmic space"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR028082">
        <property type="entry name" value="Peripla_BP_I"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025997">
        <property type="entry name" value="SBP_2_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13407">
        <property type="entry name" value="Peripla_BP_4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53822">
        <property type="entry name" value="SSF53822"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="1">
        <location>
            <begin position="1"/>
            <end position="27"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5002736252" evidence="1">
        <location>
            <begin position="28"/>
            <end position="353"/>
        </location>
    </feature>
    <feature type="domain" description="Peripla_BP_4" evidence="2">
        <location>
            <begin position="52"/>
            <end position="305"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF13407"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ABX37211.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="353" mass="37531" checksum="AB428265BC5BFAD1" modified="2008-01-15" version="1">MPFFRFTTVLAAALAGGLFLAAAQVRAQAPAPLSAPAPVPVPAPAKPYRIGAAVYGLKGEFMQMWTKELKAHPAVKDGTVQITVFDGNYDALTQSNQFDTMITQKYDGILFVPIDLKAGAAPVHKAVKAGIPVVGSNTRVQGEVLTSYVGNDDVVAGRMQAEALMKAIGGKGNIVVIEGPIGQSAQIERARGNDEVLARHKDVKVLARKTANWSRAESMGLMENWLTAFPGQIQGVIAQNDDEALGAVQAIKTKGIDIKTIPVVGVDGVAAAITAVKRGEMTTNFQDAQAQAQGALDVLLRQLVGPSYRPRSVVWSEYAQAMPWGDGTAKSYEVPWTAIVPANADAFLQKVRK</sequence>
</entry>
<entry dataset="Swiss-Prot" created="2009-04-14" modified="2022-08-03" version="84" xmlns="http://uniprot.org/uniprot">
    <accession>A9C3C8</accession>
    <name>IHFA_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Integration host factor subunit alpha</fullName>
            <shortName evidence="1">IHF-alpha</shortName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="1" type="primary">ihfA</name>
        <name evidence="1" type="synonym">himA</name>
        <name type="ordered locus">Daci_4610</name>
    </gene>
    <organism>
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference key="1">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain>DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="1">This protein is one of the two subunits of integration host factor, a specific DNA-binding protein that functions in genetic recombination as well as in transcriptional and translational control.</text>
    </comment>
    <comment type="subunit">
        <text evidence="1">Heterodimer of an alpha and a beta chain.</text>
    </comment>
    <comment type="similarity">
        <text evidence="1">Belongs to the bacterial histone-like protein family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX37239.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012206409.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A9C3C8"/>
    <dbReference type="SMR" id="A9C3C8"/>
    <dbReference type="STRING" id="398578.Daci_4610"/>
    <dbReference type="PRIDE" id="A9C3C8"/>
    <dbReference type="EnsemblBacteria" id="ABX37239">
        <property type="protein sequence ID" value="ABX37239"/>
        <property type="gene ID" value="Daci_4610"/>
    </dbReference>
    <dbReference type="GeneID" id="60688856"/>
    <dbReference type="KEGG" id="dac:Daci_4610"/>
    <dbReference type="eggNOG" id="COG0776">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_105066_1_0_4"/>
    <dbReference type="OMA" id="IYVRGFG"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030527">
        <property type="term" value="F:structural constituent of chromatin"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006310">
        <property type="term" value="P:DNA recombination"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006355">
        <property type="term" value="P:regulation of transcription, DNA-templated"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006417">
        <property type="term" value="P:regulation of translation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd13835">
        <property type="entry name" value="IHF_A"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="4.10.520.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00380">
        <property type="entry name" value="IHF_alpha"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000119">
        <property type="entry name" value="Hist_DNA-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020816">
        <property type="entry name" value="Histone-like_DNA-bd_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010992">
        <property type="entry name" value="IHF-like_DNA-bd_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005684">
        <property type="entry name" value="IHF_alpha"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33175">
        <property type="entry name" value="PTHR33175"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00216">
        <property type="entry name" value="Bac_DNA_binding"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR01727">
        <property type="entry name" value="DNABINDINGHU"/>
    </dbReference>
    <dbReference type="SMART" id="SM00411">
        <property type="entry name" value="BHL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47729">
        <property type="entry name" value="SSF47729"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00987">
        <property type="entry name" value="himA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00045">
        <property type="entry name" value="HISTONE_LIKE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword id="KW-0233">DNA recombination</keyword>
    <keyword id="KW-0238">DNA-binding</keyword>
    <keyword id="KW-1185">Reference proteome</keyword>
    <keyword id="KW-0804">Transcription</keyword>
    <keyword id="KW-0805">Transcription regulation</keyword>
    <keyword id="KW-0810">Translation regulation</keyword>
    <feature type="chain" id="PRO_1000122133" description="Integration host factor subunit alpha">
        <location>
            <begin position="1"/>
            <end position="110"/>
        </location>
    </feature>
    <evidence type="ECO:0000255" key="1">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00380"/>
        </source>
    </evidence>
    <sequence length="110" mass="12050" checksum="11CBBC326CB9EEEC" modified="2008-01-15" version="1">MELTVESLDSPALTKAQLADLLFDEIGLNKRESKEMVDAFFELISQSLVTGEDVKLSGFGNFQIRTKAPRPGRNPRTGEAIPIEARRVVTFHASSKLKEQIQEGTTGSAS</sequence>
</entry>
<entry dataset="Swiss-Prot" created="2008-09-02" modified="2022-08-03" version="75" xmlns="http://uniprot.org/uniprot">
    <accession>A9C3G2</accession>
    <name>MNMC_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">tRNA 5-methylaminomethyl-2-thiouridine biosynthesis bifunctional protein MnmC</fullName>
            <shortName evidence="1">tRNA mnm(5)s(2)U biosynthesis bifunctional protein</shortName>
        </recommendedName>
        <domain>
            <recommendedName>
                <fullName evidence="1">tRNA (mnm(5)s(2)U34)-methyltransferase</fullName>
                <ecNumber evidence="1">2.1.1.61</ecNumber>
            </recommendedName>
        </domain>
        <domain>
            <recommendedName>
                <fullName evidence="1">FAD-dependent cmnm(5)s(2)U34 oxidoreductase</fullName>
                <ecNumber evidence="1">1.5.-.-</ecNumber>
            </recommendedName>
        </domain>
    </protein>
    <gene>
        <name evidence="1" type="primary">mnmC</name>
        <name type="ordered locus">Daci_4644</name>
    </gene>
    <organism>
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference key="1">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain>DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="1">Catalyzes the last two steps in the biosynthesis of 5-methylaminomethyl-2-thiouridine (mnm(5)s(2)U) at the wobble position (U34) in tRNA. Catalyzes the FAD-dependent demodification of cmnm(5)s(2)U34 to nm(5)s(2)U34, followed by the transfer of a methyl group from S-adenosyl-L-methionine to nm(5)s(2)U34, to form mnm(5)s(2)U34.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>5-aminomethyl-2-thiouridine(34) in tRNA + S-adenosyl-L-methionine = 5-methylaminomethyl-2-thiouridine(34) in tRNA + H(+) + S-adenosyl-L-homocysteine</text>
            <dbReference type="Rhea" id="RHEA:19569"/>
            <dbReference type="Rhea" id="RHEA-COMP:10195"/>
            <dbReference type="Rhea" id="RHEA-COMP:10197"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:57856"/>
            <dbReference type="ChEBI" id="CHEBI:59789"/>
            <dbReference type="ChEBI" id="CHEBI:74454"/>
            <dbReference type="ChEBI" id="CHEBI:74455"/>
            <dbReference type="EC" id="2.1.1.61"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>FAD</name>
            <dbReference type="ChEBI" id="CHEBI:57692"/>
        </cofactor>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="1">In the N-terminal section; belongs to the methyltransferase superfamily. tRNA (mnm(5)s(2)U34)-methyltransferase family.</text>
    </comment>
    <comment type="similarity">
        <text evidence="1">In the C-terminal section; belongs to the DAO family.</text>
    </comment>
    <dbReference type="EC" id="2.1.1.61" evidence="1"/>
    <dbReference type="EC" id="1.5.-.-" evidence="1"/>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX37273.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A9C3G2"/>
    <dbReference type="SMR" id="A9C3G2"/>
    <dbReference type="STRING" id="398578.Daci_4644"/>
    <dbReference type="PRIDE" id="A9C3G2"/>
    <dbReference type="EnsemblBacteria" id="ABX37273">
        <property type="protein sequence ID" value="ABX37273"/>
        <property type="gene ID" value="Daci_4644"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_4644"/>
    <dbReference type="eggNOG" id="COG0665">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="eggNOG" id="COG4121">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_022427_1_0_4"/>
    <dbReference type="OMA" id="NFLCAWQ"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0050660">
        <property type="term" value="F:flavin adenine dinucleotide binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016645">
        <property type="term" value="F:oxidoreductase activity, acting on the CH-NH group of donors"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004808">
        <property type="term" value="F:tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0002097">
        <property type="term" value="P:tRNA wobble base modification"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.150">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.50.50.60">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01102">
        <property type="entry name" value="MnmC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006076">
        <property type="entry name" value="FAD-dep_OxRdtase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036188">
        <property type="entry name" value="FAD/NAD-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008471">
        <property type="entry name" value="MnmC-like_methylTransf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029063">
        <property type="entry name" value="SAM-dependent_MTases_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023032">
        <property type="entry name" value="tRNA_MAMT_biosynth_bifunc_MnmC"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017610">
        <property type="entry name" value="tRNA_S-uridine_synth_MnmC_C"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01266">
        <property type="entry name" value="DAO"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF05430">
        <property type="entry name" value="Methyltransf_30"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51905">
        <property type="entry name" value="SSF51905"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR03197">
        <property type="entry name" value="MnmC_Cterm"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword id="KW-0963">Cytoplasm</keyword>
    <keyword id="KW-0274">FAD</keyword>
    <keyword id="KW-0285">Flavoprotein</keyword>
    <keyword id="KW-0489">Methyltransferase</keyword>
    <keyword id="KW-0511">Multifunctional enzyme</keyword>
    <keyword id="KW-0560">Oxidoreductase</keyword>
    <keyword id="KW-1185">Reference proteome</keyword>
    <keyword id="KW-0949">S-adenosyl-L-methionine</keyword>
    <keyword id="KW-0808">Transferase</keyword>
    <keyword id="KW-0819">tRNA processing</keyword>
    <feature type="chain" id="PRO_0000347979" description="tRNA 5-methylaminomethyl-2-thiouridine biosynthesis bifunctional protein MnmC">
        <location>
            <begin position="1"/>
            <end position="645"/>
        </location>
    </feature>
    <feature type="region of interest" description="tRNA (mnm(5)s(2)U34)-methyltransferase">
        <location>
            <begin position="1"/>
            <end position="230"/>
        </location>
    </feature>
    <feature type="region of interest" description="FAD-dependent cmnm(5)s(2)U34 oxidoreductase">
        <location>
            <begin position="254"/>
            <end position="645"/>
        </location>
    </feature>
    <evidence type="ECO:0000255" key="1">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01102"/>
        </source>
    </evidence>
    <sequence length="645" mass="69012" checksum="8EE9A235DBE72FC7" modified="2008-01-15" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="39" xmlns="http://uniprot.org/uniprot">
    <accession>A9C3G9</accession>
    <name>A9C3G9_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Daci_4651</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="4" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX37280.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012206450.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_4651"/>
    <dbReference type="PRIDE" id="A9C3G9"/>
    <dbReference type="EnsemblBacteria" id="ABX37280">
        <property type="protein sequence ID" value="ABX37280"/>
        <property type="gene ID" value="Daci_4651"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_4651"/>
    <dbReference type="eggNOG" id="ENOG50349Z8">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_805912_0_0_4"/>
    <dbReference type="OMA" id="AWDAYLH"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="2">
        <location>
            <begin position="1"/>
            <end position="22"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5002736126" evidence="2">
        <location>
            <begin position="23"/>
            <end position="347"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="21"/>
            <end position="50"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="22"/>
            <end position="36"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ABX37280.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="347" mass="38115" checksum="F74857E75FA33DD5" modified="2008-01-15" version="1">MRNRCAAIGLALALATAAQAQAQKPAPPQSPLSAAHTADTPEPDKSAQESAWDAYLHRVAAQLAGSGSGRDLAFAAILINLSVPPFLQEDADSRAPQWRQAALERAGQDVLAYQLLAARAPEREGELRSQAARRWLALEPSNLTALMWQALGPQELLVAARESRYADLHMYDGVRWMQSALLKHPPTAEELQAFGGGQPYRPEEGAAITAMGIWAAFELPGYRTLIDACKPERRGDAPSRDADCLHVAHLMTERSSTVLDEAFGLAIRRWLARTPAERAAVQSRRRQLDWLMHKSNPLSMQAGGDPFVRLLSDPSIHSEQQLLERMLKDAGRPLQPPPGWRLPVPKH</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="41" xmlns="http://uniprot.org/uniprot">
    <accession>A9C3K8</accession>
    <name>A9C3K8_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Daci_4690</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="2" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX37319.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012206489.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_4690"/>
    <dbReference type="PRIDE" id="A9C3K8"/>
    <dbReference type="EnsemblBacteria" id="ABX37319">
        <property type="protein sequence ID" value="ABX37319"/>
        <property type="gene ID" value="Daci_4690"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_4690"/>
    <dbReference type="eggNOG" id="ENOG5034AI4">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_2129370_0_0_4"/>
    <dbReference type="OMA" id="MQHITHQ"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ABX37319.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="113" mass="12729" checksum="D1638FF53780C1B7" modified="2008-01-15" version="1">MQHITHQVTSHDTKADSFSAIGNAMRVRLNERLYSSLAEAHRRGQPALSRRELRDFHNECTGEWLEISSVASTVNALVAAKRVEEVEARACSLPPHRLVKPVRCRLQQATLTD</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="46" xmlns="http://uniprot.org/uniprot">
    <accession>A9C3L0</accession>
    <name>A9C3L0_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Daci_4692</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="2" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX37321.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_4692"/>
    <dbReference type="PRIDE" id="A9C3L0"/>
    <dbReference type="EnsemblBacteria" id="ABX37321">
        <property type="protein sequence ID" value="ABX37321"/>
        <property type="gene ID" value="Daci_4692"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_4692"/>
    <dbReference type="eggNOG" id="ENOG5033C9D">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_126945_0_0_4"/>
    <dbReference type="OMA" id="CIRINPV"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ABX37321.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="178" mass="19115" checksum="C6DEA52FB073F57F" modified="2008-01-15" version="1">MLMSATFSVGIAPGYVESEPQADIAAGMDVLDAAYLIAQTSQGGIKALAVRMGINAGTLQHKLNTNNDTHHLTLRESVRLQVVTGNAAVLHAMASELGYECRRTLPDQAEGDPVEAFMHFQSAVAEVTRAAADAHRQPSRNAVRRLDRQVQELTVMAQYLARSAQQRLADTPGGGNAY</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="67" xmlns="http://uniprot.org/uniprot">
    <accession>A9BM32</accession>
    <name>A9BM32_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">N-acetyltransferase domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="4" type="ordered locus">Daci_4748</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="5" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="pathway">
        <text evidence="1">Siderophore biosynthesis.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX37377.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_4748"/>
    <dbReference type="PRIDE" id="A9BM32"/>
    <dbReference type="EnsemblBacteria" id="ABX37377">
        <property type="protein sequence ID" value="ABX37377"/>
        <property type="gene ID" value="Daci_4748"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_4748"/>
    <dbReference type="eggNOG" id="COG1670">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_039848_0_0_4"/>
    <dbReference type="OMA" id="VGESRWR"/>
    <dbReference type="UniPathway" id="UPA00219"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008080">
        <property type="term" value="F:N-acetyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0019290">
        <property type="term" value="P:siderophore biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016181">
        <property type="entry name" value="Acyl_CoA_acyltransferase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019432">
        <property type="entry name" value="Acyltransferase_MbtK/IucB-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000182">
        <property type="entry name" value="GNAT_dom"/>
    </dbReference>
    <dbReference type="SMART" id="SM01006">
        <property type="entry name" value="AlcB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55729">
        <property type="entry name" value="SSF55729"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51186">
        <property type="entry name" value="GNAT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="N-acetyltransferase" evidence="3">
        <location>
            <begin position="211"/>
            <end position="375"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="1"/>
            <end position="28"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004924"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="PROSITE" id="PS51186"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="ABX37377.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="400" mass="44663" checksum="BFEB6A67884F2CD1" modified="2008-01-15" version="1">MSLVSLVPLVPLPEPPPVSRTRGTPSERVHVRPVEATATPSPDASGASYLAHAGAETTTVFVDGQRLRLERSGSVDAGRPGKHSLWNLSPTAAPGLMQLQWLGPCSGMPEADELLAALQAGFGLHPDAQAIELSLPRLPPGLRDSIATVQPGQAPCVARSVLWQQPLWLPRPRPPYALHYTISEGRRHPVRLHKPRGEVYRRFIPWLGRTLSFRTVEPEADLPLIHRWMNDPVVAHFWEESGDLAHHRAYLQRMAGDPHALGLIGCFDGEPFGYFEAYWAKEDRIAPFYDAGDHDRGWHALVGEARFRGQPYLTAWLPSLSHYLFLDDCRTQRIVVEPRADNRKMRKSLPRCGYALVKEFDFPHKRAVLGVLLRERFFADALWIPQTDAAAPDALDASTQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="101" xmlns="http://uniprot.org/uniprot">
    <accession>A9BMD7</accession>
    <name>A9BMD7_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="7">Bifunctional uridylyltransferase/uridylyl-removing enzyme</fullName>
            <shortName evidence="7">UTase/UR</shortName>
        </recommendedName>
        <alternativeName>
            <fullName evidence="7">Bifunctional [protein-PII] modification enzyme</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="7">Bifunctional nitrogen sensor protein</fullName>
        </alternativeName>
        <domain>
            <recommendedName>
                <fullName evidence="7">[Protein-PII] uridylyltransferase</fullName>
                <shortName evidence="7">PII uridylyltransferase</shortName>
                <shortName evidence="7">UTase</shortName>
                <ecNumber evidence="7">2.7.7.59</ecNumber>
            </recommendedName>
        </domain>
        <domain>
            <recommendedName>
                <fullName evidence="7">[Protein-PII]-UMP uridylyl-removing enzyme</fullName>
                <shortName evidence="7">UR</shortName>
                <ecNumber evidence="7">3.1.4.-</ecNumber>
            </recommendedName>
        </domain>
    </protein>
    <gene>
        <name evidence="7" type="primary">glnD</name>
        <name evidence="11" type="ordered locus">Daci_4853</name>
    </gene>
    <organism evidence="11 12">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="11 12" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="12">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="12" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="12">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="7">
            <text>[protein-PII]-L-tyrosine + UTP = [protein-PII]-uridylyl-L-tyrosine + diphosphate</text>
            <dbReference type="Rhea" id="RHEA:13673"/>
            <dbReference type="Rhea" id="RHEA-COMP:12147"/>
            <dbReference type="Rhea" id="RHEA-COMP:12148"/>
            <dbReference type="ChEBI" id="CHEBI:33019"/>
            <dbReference type="ChEBI" id="CHEBI:46398"/>
            <dbReference type="ChEBI" id="CHEBI:46858"/>
            <dbReference type="ChEBI" id="CHEBI:90602"/>
            <dbReference type="EC" id="2.7.7.59"/>
        </reaction>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="7">
            <text>[protein-PII]-uridylyl-L-tyrosine + H2O = [protein-PII]-L-tyrosine + H(+) + UMP</text>
            <dbReference type="Rhea" id="RHEA:48600"/>
            <dbReference type="Rhea" id="RHEA-COMP:12147"/>
            <dbReference type="Rhea" id="RHEA-COMP:12148"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:46858"/>
            <dbReference type="ChEBI" id="CHEBI:57865"/>
            <dbReference type="ChEBI" id="CHEBI:90602"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="7">
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </cofactor>
    </comment>
    <comment type="activity regulation">
        <text evidence="7">Uridylyltransferase (UTase) activity is inhibited by glutamine, while glutamine activates uridylyl-removing (UR) activity.</text>
    </comment>
    <comment type="domain">
        <text evidence="7">Has four distinct domains: an N-terminal nucleotidyltransferase (NT) domain responsible for UTase activity, a central HD domain that encodes UR activity, and two C-terminal ACT domains that seem to have a role in glutamine sensing.</text>
    </comment>
    <comment type="similarity">
        <text evidence="7">Belongs to the GlnD family.</text>
    </comment>
    <comment type="caution">
        <text evidence="7">Lacks conserved residue(s) required for the propagation of feature annotation.</text>
    </comment>
    <dbReference type="EC" id="2.7.7.59" evidence="7"/>
    <dbReference type="EC" id="3.1.4.-" evidence="7"/>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX37482.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012206652.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_4853"/>
    <dbReference type="PRIDE" id="A9BMD7"/>
    <dbReference type="EnsemblBacteria" id="ABX37482">
        <property type="protein sequence ID" value="ABX37482"/>
        <property type="gene ID" value="Daci_4853"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_4853"/>
    <dbReference type="eggNOG" id="COG2844">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_012833_0_0_4"/>
    <dbReference type="OMA" id="WIAKYVY"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008773">
        <property type="term" value="F:[protein-PII] uridylyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008081">
        <property type="term" value="F:phosphoric diester hydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006807">
        <property type="term" value="P:nitrogen compound metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006808">
        <property type="term" value="P:regulation of nitrogen utilization"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd00077">
        <property type="entry name" value="HDc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00277">
        <property type="entry name" value="PII_uridylyl_transf"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045865">
        <property type="entry name" value="ACT-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002912">
        <property type="entry name" value="ACT_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003607">
        <property type="entry name" value="HD/PDEase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006674">
        <property type="entry name" value="HD_domain"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043519">
        <property type="entry name" value="NT_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013546">
        <property type="entry name" value="PII_UdlTrfase/GS_AdlTrfase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010043">
        <property type="entry name" value="UTase/UR"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR47320">
        <property type="entry name" value="PTHR47320"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08335">
        <property type="entry name" value="GlnD_UR_UTase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01966">
        <property type="entry name" value="HD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF006288">
        <property type="entry name" value="PII_uridyltransf"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00471">
        <property type="entry name" value="HDc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55021">
        <property type="entry name" value="SSF55021"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF81301">
        <property type="entry name" value="SSF81301"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01693">
        <property type="entry name" value="UTase_glnD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51671">
        <property type="entry name" value="ACT"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51831">
        <property type="entry name" value="HD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4 7" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="5 7" id="KW-0460">Magnesium</keyword>
    <keyword evidence="6 7" id="KW-0511">Multifunctional enzyme</keyword>
    <keyword evidence="2 7 11" id="KW-0548">Nucleotidyltransferase</keyword>
    <keyword evidence="12" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0677">Repeat</keyword>
    <keyword evidence="1 7 11" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="HD" evidence="10">
        <location>
            <begin position="480"/>
            <end position="596"/>
        </location>
    </feature>
    <feature type="domain" description="ACT" evidence="9">
        <location>
            <begin position="719"/>
            <end position="798"/>
        </location>
    </feature>
    <feature type="domain" description="ACT" evidence="9">
        <location>
            <begin position="827"/>
            <end position="895"/>
        </location>
    </feature>
    <feature type="region of interest" description="Uridylyltransferase" evidence="7">
        <location>
            <begin position="1"/>
            <end position="362"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="8">
        <location>
            <begin position="1"/>
            <end position="38"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="8">
        <location>
            <begin position="16"/>
            <end position="30"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022695"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022737"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022842"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023268"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00277"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="9">
        <source>
            <dbReference type="PROSITE" id="PS51671"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="10">
        <source>
            <dbReference type="PROSITE" id="PS51831"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="EMBL" id="ABX37482.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="895" mass="101020" checksum="4BCB6CBC2C3BC6B6" modified="2008-01-15" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="85" xmlns="http://uniprot.org/uniprot">
    <accession>A9BMJ0</accession>
    <name>A9BMJ0_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="8">Transcription termination factor Rho</fullName>
            <ecNumber evidence="8">3.6.4.-</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="8">ATP-dependent helicase Rho</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="8" type="primary">rho</name>
        <name evidence="11" type="ordered locus">Daci_4906</name>
    </gene>
    <organism evidence="11 12">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="11 12" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="12">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="12" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="12">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="8">Facilitates transcription termination by a mechanism that involves Rho binding to the nascent RNA, activation of Rho's RNA-dependent ATPase activity, and release of the mRNA from the DNA template.</text>
    </comment>
    <comment type="subunit">
        <text evidence="8">Homohexamer. The homohexamer assembles into an open ring structure.</text>
    </comment>
    <comment type="similarity">
        <text evidence="8 9">Belongs to the Rho family.</text>
    </comment>
    <comment type="caution">
        <text evidence="8">Lacks conserved residue(s) required for the propagation of feature annotation.</text>
    </comment>
    <dbReference type="EC" id="3.6.4.-" evidence="8"/>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX37535.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012206705.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_4906"/>
    <dbReference type="PRIDE" id="A9BMJ0"/>
    <dbReference type="EnsemblBacteria" id="ABX37535">
        <property type="protein sequence ID" value="ABX37535"/>
        <property type="gene ID" value="Daci_4906"/>
    </dbReference>
    <dbReference type="GeneID" id="60689250"/>
    <dbReference type="KEGG" id="dac:Daci_4906"/>
    <dbReference type="eggNOG" id="COG1158">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_016377_4_3_4"/>
    <dbReference type="OMA" id="TRLCRAH"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005829">
        <property type="term" value="C:cytosol"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008186">
        <property type="term" value="F:ATP-dependent activity, acting on RNA"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004386">
        <property type="term" value="F:helicase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016787">
        <property type="term" value="F:hydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003723">
        <property type="term" value="F:RNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006353">
        <property type="term" value="P:DNA-templated transcription, termination"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd04459">
        <property type="entry name" value="Rho_CSD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="CDD" id="cd01128">
        <property type="entry name" value="rho_factor"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.50.140">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01884">
        <property type="entry name" value="Rho"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003593">
        <property type="entry name" value="AAA+_ATPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000194">
        <property type="entry name" value="ATPase_F1/V1/A1_a/bsu_nucl-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011129">
        <property type="entry name" value="CSD"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012340">
        <property type="entry name" value="NA-bd_OB-fold"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041703">
        <property type="entry name" value="Rho_factor_ATP-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011112">
        <property type="entry name" value="Rho_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036269">
        <property type="entry name" value="Rho_N_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011113">
        <property type="entry name" value="Rho_RNA-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004665">
        <property type="entry name" value="Term_rho"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR46425">
        <property type="entry name" value="PTHR46425"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00006">
        <property type="entry name" value="ATP-synt_ab"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07498">
        <property type="entry name" value="Rho_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07497">
        <property type="entry name" value="Rho_RNA_bind"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00382">
        <property type="entry name" value="AAA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00357">
        <property type="entry name" value="CSP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00959">
        <property type="entry name" value="Rho_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50249">
        <property type="entry name" value="SSF50249"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF68912">
        <property type="entry name" value="SSF68912"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00767">
        <property type="entry name" value="rho"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51856">
        <property type="entry name" value="RHO_RNA_BD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4 8" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="3 8" id="KW-0347">Helicase</keyword>
    <keyword evidence="8" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="2 8" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="12" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="5 8 9" id="KW-0694">RNA-binding</keyword>
    <keyword evidence="7 8" id="KW-0804">Transcription</keyword>
    <keyword evidence="6 8" id="KW-0805">Transcription regulation</keyword>
    <keyword evidence="1 8" id="KW-0806">Transcription termination</keyword>
    <feature type="domain" description="Rho RNA-BD" evidence="10">
        <location>
            <begin position="48"/>
            <end position="123"/>
        </location>
    </feature>
    <feature type="binding site" evidence="8">
        <location>
            <begin position="169"/>
            <end position="174"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="8">
        <location>
            <begin position="181"/>
            <end position="186"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="8">
        <location>
            <position position="212"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022472"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022806"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022884"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023015"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023163"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01884"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU01203"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="10">
        <source>
            <dbReference type="PROSITE" id="PS51856"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="EMBL" id="ABX37535.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="420" mass="47313" checksum="301779B809FDDA3D" modified="2008-01-15" version="1">MHLNELKALHVSEVLKQAEALEIENVGRMRKQELMFAIIKKRAKAGEQVFADGVLEILPDGFGFLRSPDTSYTASTDDIYISPSQVRRFNLHTGDMIEGEVRTPKDGERYFALTKLDSVNGGSPEQNKHKVLFENLTPLFPTQQLRLEREIKGEENITGRIIDIIAPIGRGQRALIVAPPKSGKTMMMQSIAHSITANHPDVHLMVLLVDERPEEVTEMQRSVKGEIIASTFDEPATRHVHVAEMVIERAKRLVELKKDVVILLDSITRLARAYNNVVPSSGKVLSGGVDSNALQRPKRFFGAARNVEEGGSLTIIATALVDTGSRMDEVIFEEFKGTGNSELALNRRLYEKRVFPAIELNKSGTRREELLLAPEILQKTRILRQFMYNMDEIEAMELMIKNMRATKTNVDFFDMMRRGG</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="96" xmlns="http://uniprot.org/uniprot">
    <accession>A9BMJ6</accession>
    <name>A9BMJ6_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">Phosphate regulon sensor protein PhoR</fullName>
            <ecNumber evidence="2">2.7.13.3</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="8" type="ordered locus">Daci_4912</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="9" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="6">Member of the two-component regulatory system PhoR/PhoB involved in the phosphate regulon genes expression. PhoR may function as a membrane-associated protein kinase that phosphorylates PhoB in response to environmental signals.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>ATP + protein L-histidine = ADP + protein N-phospho-L-histidine.</text>
            <dbReference type="EC" id="2.7.13.3"/>
        </reaction>
    </comment>
    <dbReference type="EC" id="2.7.13.3" evidence="2"/>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX37541.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012206711.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_4912"/>
    <dbReference type="PRIDE" id="A9BMJ6"/>
    <dbReference type="EnsemblBacteria" id="ABX37541">
        <property type="protein sequence ID" value="ABX37541"/>
        <property type="gene ID" value="Daci_4912"/>
    </dbReference>
    <dbReference type="GeneID" id="60689256"/>
    <dbReference type="KEGG" id="dac:Daci_4912"/>
    <dbReference type="eggNOG" id="COG5002">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_000445_89_2_4"/>
    <dbReference type="OMA" id="TRFWRGS"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000155">
        <property type="term" value="F:phosphorelay sensor kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006817">
        <property type="term" value="P:phosphate ion transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd00082">
        <property type="entry name" value="HisKA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="CDD" id="cd00130">
        <property type="entry name" value="PAS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.565.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003594">
        <property type="entry name" value="HATPase_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036890">
        <property type="entry name" value="HATPase_C_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005467">
        <property type="entry name" value="His_kinase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003661">
        <property type="entry name" value="HisK_dim/P"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036097">
        <property type="entry name" value="HisK_dim/P_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000014">
        <property type="entry name" value="PAS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035965">
        <property type="entry name" value="PAS-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004358">
        <property type="entry name" value="Sig_transdc_His_kin-like_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014310">
        <property type="entry name" value="Sig_transdc_His_kinase_PhoR"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02518">
        <property type="entry name" value="HATPase_c"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00512">
        <property type="entry name" value="HisKA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13188">
        <property type="entry name" value="PAS_8"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00344">
        <property type="entry name" value="BCTRLSENSOR"/>
    </dbReference>
    <dbReference type="SMART" id="SM00387">
        <property type="entry name" value="HATPase_c"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00388">
        <property type="entry name" value="HisKA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00091">
        <property type="entry name" value="PAS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47384">
        <property type="entry name" value="SSF47384"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55785">
        <property type="entry name" value="SSF55785"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55874">
        <property type="entry name" value="SSF55874"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR02966">
        <property type="entry name" value="phoR_proteo"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50109">
        <property type="entry name" value="HIS_KIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="8" id="KW-0418">Kinase</keyword>
    <keyword evidence="5" id="KW-0592">Phosphate transport</keyword>
    <keyword evidence="4" id="KW-0597">Phosphoprotein</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="8" id="KW-0808">Transferase</keyword>
    <keyword evidence="5" id="KW-0813">Transport</keyword>
    <feature type="domain" description="Histidine kinase" evidence="7">
        <location>
            <begin position="217"/>
            <end position="444"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00000085"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00012438"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00019665"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022553"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022592"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00025207"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="PROSITE" id="PS50109"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="ABX37541.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="464" mass="50960" checksum="CD4558DC35E69FA9" modified="2008-01-15" version="1">MLASQIAGALLGWWLWGVMSASSPGMAAQAVAALTGALCAGWIWWLVDSWNAMRLLSWLRQSELREAPELSGIWGEASVRMRRWLRQSVQQVQQGDQRLNDILSALQASPNGVVLLDADGRIEWCNQIAARQFGFDAERDLLQSIGNLVRDPEFSAYFATQDFSRDLVMQGRESTASRPVKLSVQLYGYGEGRKLLLARDVTAVEQAEAMRRDFVANVSHEIRTPLTVLVGFVETLQNLPLEPEERNRYLGLMAQQAERMQHLVEDLLALSRLEGSPLPSSNEWVPVAQLMQRCENEARGLSSMLTRKQSLPHALSFPSAEMLAQAGEVAGASAELQSAFSNLLANAMRYTPAGGRIEVTWESLPDGSARFAVQDSGPGIEPKHLARLTERFYRVDRSRSRDTGGTGLGLAIVKHVLQRHGAKLGITSAPGQGSEFSVTFPASRVRIAAPGTREVGEARESRAA</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="50" xmlns="http://uniprot.org/uniprot">
    <accession>A9BMT8</accession>
    <name>A9BMT8_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Putative transmembrane protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Daci_5004</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="4" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX37633.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_5004"/>
    <dbReference type="PRIDE" id="A9BMT8"/>
    <dbReference type="EnsemblBacteria" id="ABX37633">
        <property type="protein sequence ID" value="ABX37633"/>
        <property type="gene ID" value="Daci_5004"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_5004"/>
    <dbReference type="eggNOG" id="COG2981">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_069319_0_0_4"/>
    <dbReference type="OMA" id="PLIWGWL"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 3" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="2" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="20"/>
            <end position="43"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="75"/>
            <end position="101"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="122"/>
            <end position="145"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="151"/>
            <end position="174"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="195"/>
            <end position="227"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="233"/>
            <end position="255"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="266"/>
            <end position="295"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ABX37633.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="295" mass="32442" checksum="52D7A783BA288EC7" modified="2008-01-15" version="1">MGLLLDSFWRATAYCLHKRVIAWSLFPLLFMAITAWLLGYFFWADAVVWTEGVLQGVGWLHTVWSWMGVQSLPELVAPVLVVLSVTPVLVVVSLLLVALFMTPALVELVAQRRFPALERRQGATLVGSLVWSAGSSLIALIALLVSVPLWFVPPLVVVIPPLIWGWLTYRVMAFDALSAHASKPERRSLFLRHRLALMLMGVVCGYLGAAPAIVWASGVVFIAAFWILIPVAIWIYALIFAFSSLWFAHFCLAALQRMREEEPALPDTPIVPYAPDAPLGAGAASPPSTPQEKTS</sequence>
</entry>
<entry dataset="Swiss-Prot" created="2009-04-14" modified="2022-08-03" version="85" xmlns="http://uniprot.org/uniprot">
    <accession>A9BN39</accession>
    <name>PYRG_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">CTP synthase</fullName>
            <ecNumber evidence="1">6.3.4.2</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="1">Cytidine 5'-triphosphate synthase</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="1">Cytidine triphosphate synthetase</fullName>
            <shortName evidence="1">CTP synthetase</shortName>
            <shortName evidence="1">CTPS</shortName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="1">UTP--ammonia ligase</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="1" type="primary">pyrG</name>
        <name type="ordered locus">Daci_5105</name>
    </gene>
    <organism>
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference key="1">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain>DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="1">Catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen. Regulates intracellular CTP levels through interactions with the four ribonucleotide triphosphates.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>ATP + H2O + L-glutamine + UTP = ADP + CTP + 2 H(+) + L-glutamate + phosphate</text>
            <dbReference type="Rhea" id="RHEA:26426"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:29985"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:37563"/>
            <dbReference type="ChEBI" id="CHEBI:43474"/>
            <dbReference type="ChEBI" id="CHEBI:46398"/>
            <dbReference type="ChEBI" id="CHEBI:58359"/>
            <dbReference type="ChEBI" id="CHEBI:456216"/>
            <dbReference type="EC" id="6.3.4.2"/>
        </reaction>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>H2O + L-glutamine = L-glutamate + NH4(+)</text>
            <dbReference type="Rhea" id="RHEA:15889"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:28938"/>
            <dbReference type="ChEBI" id="CHEBI:29985"/>
            <dbReference type="ChEBI" id="CHEBI:58359"/>
        </reaction>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>ATP + NH4(+) + UTP = ADP + CTP + 2 H(+) + phosphate</text>
            <dbReference type="Rhea" id="RHEA:16597"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:28938"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:37563"/>
            <dbReference type="ChEBI" id="CHEBI:43474"/>
            <dbReference type="ChEBI" id="CHEBI:46398"/>
            <dbReference type="ChEBI" id="CHEBI:456216"/>
        </reaction>
    </comment>
    <comment type="activity regulation">
        <text evidence="1">Allosterically activated by GTP, when glutamine is the substrate; GTP has no effect on the reaction when ammonia is the substrate. The allosteric effector GTP functions by stabilizing the protein conformation that binds the tetrahedral intermediate(s) formed during glutamine hydrolysis. Inhibited by the product CTP, via allosteric rather than competitive inhibition.</text>
    </comment>
    <comment type="pathway">
        <text evidence="1">Pyrimidine metabolism; CTP biosynthesis via de novo pathway; CTP from UDP: step 2/2.</text>
    </comment>
    <comment type="subunit">
        <text evidence="1">Homotetramer.</text>
    </comment>
    <comment type="miscellaneous">
        <text evidence="1">CTPSs have evolved a hybrid strategy for distinguishing between UTP and CTP. The overlapping regions of the product feedback inhibitory and substrate sites recognize a common feature in both compounds, the triphosphate moiety. To differentiate isosteric substrate and product pyrimidine rings, an additional pocket far from the expected kinase/ligase catalytic site, specifically recognizes the cytosine and ribose portions of the product inhibitor.</text>
    </comment>
    <comment type="similarity">
        <text evidence="1">Belongs to the CTP synthase family.</text>
    </comment>
    <dbReference type="EC" id="6.3.4.2" evidence="1"/>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX37734.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012206904.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A9BN39"/>
    <dbReference type="SMR" id="A9BN39"/>
    <dbReference type="STRING" id="398578.Daci_5105"/>
    <dbReference type="PRIDE" id="A9BN39"/>
    <dbReference type="EnsemblBacteria" id="ABX37734">
        <property type="protein sequence ID" value="ABX37734"/>
        <property type="gene ID" value="Daci_5105"/>
    </dbReference>
    <dbReference type="GeneID" id="60689454"/>
    <dbReference type="KEGG" id="dac:Daci_5105"/>
    <dbReference type="eggNOG" id="COG0504">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_011675_5_0_4"/>
    <dbReference type="OMA" id="EFNNAYR"/>
    <dbReference type="UniPathway" id="UPA00159">
        <property type="reaction ID" value="UER00277"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003883">
        <property type="term" value="F:CTP synthase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004359">
        <property type="term" value="F:glutaminase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="RHEA"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0044210">
        <property type="term" value="P:'de novo' CTP biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniPathway"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006541">
        <property type="term" value="P:glutamine metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd03113">
        <property type="entry name" value="CTPS_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="CDD" id="cd01746">
        <property type="entry name" value="GATase1_CTP_Synthase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.880">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01227">
        <property type="entry name" value="PyrG"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029062">
        <property type="entry name" value="Class_I_gatase-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004468">
        <property type="entry name" value="CTP_synthase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017456">
        <property type="entry name" value="CTP_synthase_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017926">
        <property type="entry name" value="GATASE"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR033828">
        <property type="entry name" value="GATase1_CTP_Synthase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11550">
        <property type="entry name" value="PTHR11550"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF06418">
        <property type="entry name" value="CTP_synth_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00117">
        <property type="entry name" value="GATase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52317">
        <property type="entry name" value="SSF52317"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00337">
        <property type="entry name" value="PyrG"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51273">
        <property type="entry name" value="GATASE_TYPE_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword id="KW-0067">ATP-binding</keyword>
    <keyword id="KW-0315">Glutamine amidotransferase</keyword>
    <keyword id="KW-0436">Ligase</keyword>
    <keyword id="KW-0460">Magnesium</keyword>
    <keyword id="KW-0479">Metal-binding</keyword>
    <keyword id="KW-0547">Nucleotide-binding</keyword>
    <keyword id="KW-0665">Pyrimidine biosynthesis</keyword>
    <keyword id="KW-1185">Reference proteome</keyword>
    <feature type="chain" id="PRO_1000139434" description="CTP synthase">
        <location>
            <begin position="1"/>
            <end position="552"/>
        </location>
    </feature>
    <feature type="domain" description="Glutamine amidotransferase type-1" evidence="1">
        <location>
            <begin position="295"/>
            <end position="548"/>
        </location>
    </feature>
    <feature type="region of interest" description="Amidoligase domain" evidence="1">
        <location>
            <begin position="1"/>
            <end position="270"/>
        </location>
    </feature>
    <feature type="active site" description="Nucleophile; for glutamine hydrolysis" evidence="1">
        <location>
            <position position="384"/>
        </location>
    </feature>
    <feature type="active site" evidence="1">
        <location>
            <position position="521"/>
        </location>
    </feature>
    <feature type="active site" evidence="1">
        <location>
            <position position="523"/>
        </location>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <position position="13"/>
        </location>
        <ligand>
            <name>CTP</name>
            <dbReference type="ChEBI" id="CHEBI:37563"/>
            <note>allosteric inhibitor</note>
        </ligand>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <position position="13"/>
        </location>
        <ligand>
            <name>UTP</name>
            <dbReference type="ChEBI" id="CHEBI:46398"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <begin position="14"/>
            <end position="19"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <position position="71"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <position position="71"/>
        </location>
        <ligand>
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <position position="144"/>
        </location>
        <ligand>
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <begin position="151"/>
            <end position="153"/>
        </location>
        <ligand>
            <name>CTP</name>
            <dbReference type="ChEBI" id="CHEBI:37563"/>
            <note>allosteric inhibitor</note>
        </ligand>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <begin position="191"/>
            <end position="196"/>
        </location>
        <ligand>
            <name>CTP</name>
            <dbReference type="ChEBI" id="CHEBI:37563"/>
            <note>allosteric inhibitor</note>
        </ligand>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <begin position="191"/>
            <end position="196"/>
        </location>
        <ligand>
            <name>UTP</name>
            <dbReference type="ChEBI" id="CHEBI:46398"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <position position="227"/>
        </location>
        <ligand>
            <name>CTP</name>
            <dbReference type="ChEBI" id="CHEBI:37563"/>
            <note>allosteric inhibitor</note>
        </ligand>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <position position="227"/>
        </location>
        <ligand>
            <name>UTP</name>
            <dbReference type="ChEBI" id="CHEBI:46398"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <position position="357"/>
        </location>
        <ligand>
            <name>L-glutamine</name>
            <dbReference type="ChEBI" id="CHEBI:58359"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <begin position="385"/>
            <end position="388"/>
        </location>
        <ligand>
            <name>L-glutamine</name>
            <dbReference type="ChEBI" id="CHEBI:58359"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <position position="408"/>
        </location>
        <ligand>
            <name>L-glutamine</name>
            <dbReference type="ChEBI" id="CHEBI:58359"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <position position="474"/>
        </location>
        <ligand>
            <name>L-glutamine</name>
            <dbReference type="ChEBI" id="CHEBI:58359"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000255" key="1">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01227"/>
        </source>
    </evidence>
    <sequence length="552" mass="61120" checksum="C703AC9C1723D03A" modified="2008-01-15" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="48" xmlns="http://uniprot.org/uniprot">
    <accession>A9BNC4</accession>
    <name>A9BNC4_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">PilX domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="4" type="ordered locus">Daci_5190</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="5" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX37819.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012206989.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_5190"/>
    <dbReference type="PRIDE" id="A9BNC4"/>
    <dbReference type="EnsemblBacteria" id="ABX37819">
        <property type="protein sequence ID" value="ABX37819"/>
        <property type="gene ID" value="Daci_5190"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_5190"/>
    <dbReference type="eggNOG" id="COG4726">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_1118736_0_0_4"/>
    <dbReference type="OMA" id="WYWIEIL"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025205">
        <property type="entry name" value="PilX/PilW_C"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13681">
        <property type="entry name" value="PilX"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="2" id="KW-0472">Membrane</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="2" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="21"/>
            <end position="41"/>
        </location>
    </feature>
    <feature type="domain" description="PilX" evidence="3">
        <location>
            <begin position="129"/>
            <end position="249"/>
        </location>
    </feature>
    <feature type="coiled-coil region" evidence="1">
        <location>
            <begin position="55"/>
            <end position="82"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF13681"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="ABX37819.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="254" mass="27695" checksum="EC582E45E835D6FC" modified="2008-01-15" version="1">MTAKAAGMRHAHTCAARRQKGVALFIVITLVMLSMLLALWASRSALFNEMFVGNDADYQRALEAAQALLQDAELDIRGEQANGAACITNSSQPSVCRNAATITQFPQETQQVGLLLANLNRATPTSCRDALCTKRTGPQDFWNNVDETKGITLSQMTAPDVAARYGQFTGAISEGKSNPILASRETGKGGWYWIEILPYDASAGNSGLIANDSPRLALYMQPQVIYRITAIAHGRKSGTQVVLQQTYVRQKRRD</sequence>
</entry>
<entry dataset="Swiss-Prot" created="2009-03-24" modified="2022-08-03" version="76" xmlns="http://uniprot.org/uniprot">
    <accession>A9BNG1</accession>
    <name>RS18_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">30S ribosomal protein S18</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="1" type="primary">rpsR</name>
        <name type="ordered locus">Daci_5227</name>
    </gene>
    <organism>
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference key="1">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain>DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="1">Binds as a heterodimer with protein S6 to the central domain of the 16S rRNA, where it helps stabilize the platform of the 30S subunit.</text>
    </comment>
    <comment type="subunit">
        <text evidence="1">Part of the 30S ribosomal subunit. Forms a tight heterodimer with protein S6.</text>
    </comment>
    <comment type="similarity">
        <text evidence="1">Belongs to the bacterial ribosomal protein bS18 family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX37856.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012207026.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A9BNG1"/>
    <dbReference type="SMR" id="A9BNG1"/>
    <dbReference type="STRING" id="398578.Daci_5227"/>
    <dbReference type="PRIDE" id="A9BNG1"/>
    <dbReference type="EnsemblBacteria" id="ABX37856">
        <property type="protein sequence ID" value="ABX37856"/>
        <property type="gene ID" value="Daci_5227"/>
    </dbReference>
    <dbReference type="GeneID" id="60689572"/>
    <dbReference type="KEGG" id="dac:Daci_5227"/>
    <dbReference type="eggNOG" id="COG0238">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_148710_0_3_4"/>
    <dbReference type="OMA" id="QKKYCRF"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005840">
        <property type="term" value="C:ribosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0019843">
        <property type="term" value="F:rRNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003735">
        <property type="term" value="F:structural constituent of ribosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006412">
        <property type="term" value="P:translation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="4.10.640.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00270">
        <property type="entry name" value="Ribosomal_S18"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001648">
        <property type="entry name" value="Ribosomal_S18"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018275">
        <property type="entry name" value="Ribosomal_S18_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036870">
        <property type="entry name" value="Ribosomal_S18_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR13479">
        <property type="entry name" value="PTHR13479"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01084">
        <property type="entry name" value="Ribosomal_S18"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00974">
        <property type="entry name" value="RIBOSOMALS18"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46911">
        <property type="entry name" value="SSF46911"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00165">
        <property type="entry name" value="S18"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00057">
        <property type="entry name" value="RIBOSOMAL_S18"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword id="KW-1185">Reference proteome</keyword>
    <keyword id="KW-0687">Ribonucleoprotein</keyword>
    <keyword id="KW-0689">Ribosomal protein</keyword>
    <keyword id="KW-0694">RNA-binding</keyword>
    <keyword id="KW-0699">rRNA-binding</keyword>
    <feature type="chain" id="PRO_1000114417" description="30S ribosomal protein S18">
        <location>
            <begin position="1"/>
            <end position="93"/>
        </location>
    </feature>
    <evidence type="ECO:0000255" key="1">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00270"/>
        </source>
    </evidence>
    <sequence length="93" mass="10950" checksum="12B3ECFBB3C8A4B1" modified="2008-01-15" version="1">MATFKKFNKDKRPKRNTQSLLFKRKRFCRFTVAGVEEIDYKDVDTLRDFIGENGKIVPARLTGTRAIYQRQLNTAIKRARFLALVPYSDQHKI</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="60" xmlns="http://uniprot.org/uniprot">
    <accession>A9BNK0</accession>
    <name>A9BNK0_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Anti sigma-E protein, RseA</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_5266</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX37895.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012207065.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_5266"/>
    <dbReference type="PRIDE" id="A9BNK0"/>
    <dbReference type="EnsemblBacteria" id="ABX37895">
        <property type="protein sequence ID" value="ABX37895"/>
        <property type="gene ID" value="Daci_5266"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_5266"/>
    <dbReference type="eggNOG" id="COG3073">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_081225_0_0_4"/>
    <dbReference type="OMA" id="WVVVPQL"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016989">
        <property type="term" value="F:sigma factor antagonist activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd16328">
        <property type="entry name" value="RseA_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.880">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005572">
        <property type="entry name" value="Anti-sigma_E_RseA_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036147">
        <property type="entry name" value="Anti-sigma_E_RseA_N_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03872">
        <property type="entry name" value="RseA_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF89069">
        <property type="entry name" value="SSF89069"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="RseA_N" evidence="1">
        <location>
            <begin position="8"/>
            <end position="87"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF03872"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX37895.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="238" mass="24760" checksum="473258B0EB77D7D7" modified="2008-01-15" version="1">MNDDLTKREQLSALADGELSAAELQAVLAYAESDAGQQEWRMYHLVGDVLRSPELAHHSRHDVLSGIRAQLANEPRRPLVSVATEELAQIAHPAQDRAVINGAPLRDAANASVFRWKMAAGFASVAAVAAIGWSVMLGAPAGPGAAPGRALAALETGAPSAPVAVAGNAQDFPLGDTAQSSSVVAVAGSYGQSVMLRDPRLDALLASHPQYSGPATLQMPASFLRNANFASAPRANQR</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="69" xmlns="http://uniprot.org/uniprot">
    <accession>A9BNT8</accession>
    <name>A9BNT8_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="7">Inner-membrane translocator</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ordered locus">Daci_5354</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="8" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX37983.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012207152.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_5354"/>
    <dbReference type="PRIDE" id="A9BNT8"/>
    <dbReference type="EnsemblBacteria" id="ABX37983">
        <property type="protein sequence ID" value="ABX37983"/>
        <property type="gene ID" value="Daci_5354"/>
    </dbReference>
    <dbReference type="GeneID" id="60689702"/>
    <dbReference type="KEGG" id="dac:Daci_5354"/>
    <dbReference type="eggNOG" id="COG0559">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_039929_3_0_4"/>
    <dbReference type="OMA" id="MLIWSRN"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0022857">
        <property type="term" value="F:transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001851">
        <property type="entry name" value="ABC_transp_permease"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02653">
        <property type="entry name" value="BPD_transp_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="5 6" id="KW-0472">Membrane</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 6" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="4 6" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="12"/>
            <end position="35"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="67"/>
            <end position="88"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="100"/>
            <end position="123"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="143"/>
            <end position="168"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="196"/>
            <end position="216"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="236"/>
            <end position="259"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="271"/>
            <end position="295"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="ABX37983.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="309" mass="32415" checksum="FB499E5C2E0FFC4D" modified="2008-01-15" version="1">MDILLQQVINGLVLGSMYALIALGYTMVYGIIQLINFAHGEVLMVGALTSWSCIGLMQEAMPGAPGWLILLLATVIACVVAAALNFVIEKVAYRRLRSSPRLAPLITAIGVSLLLQTLAMIIWKPNYKAYPTLLPSTPFEIGTAVITPTQILVLVVTAIALASLTYLVNYTKLGRAMRATAENPRVAALMGVKPDVVISATFIIGAVLAAIAGIMYASNYGTAHHTMGFLPGLKAFTAAVFGGIGNLAGAVVGAMLLGLIESIGSGYIGDLTGGVLGSHYTDIFAFIVLIIILTLRPSGLLGERVADRA</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="68" xmlns="http://uniprot.org/uniprot">
    <accession>A9BNZ4</accession>
    <name>A9BNZ4_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="7">Methyl-accepting chemotaxis sensory transducer</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ordered locus">Daci_5410</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="8" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the methyl-accepting chemotaxis (MCP) protein family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX38039.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_5410"/>
    <dbReference type="PRIDE" id="A9BNZ4"/>
    <dbReference type="EnsemblBacteria" id="ABX38039">
        <property type="protein sequence ID" value="ABX38039"/>
        <property type="gene ID" value="Daci_5410"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_5410"/>
    <dbReference type="eggNOG" id="COG0840">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="eggNOG" id="COG3850">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_000445_107_16_4"/>
    <dbReference type="OMA" id="ANLDQMT"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004888">
        <property type="term" value="F:transmembrane signaling receptor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006935">
        <property type="term" value="P:chemotaxis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0007165">
        <property type="term" value="P:signal transduction"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004090">
        <property type="entry name" value="Chemotax_Me-accpt_rcpt"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003660">
        <property type="entry name" value="HAMP_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004089">
        <property type="entry name" value="MCPsignal_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00672">
        <property type="entry name" value="HAMP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00015">
        <property type="entry name" value="MCPsignal"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00260">
        <property type="entry name" value="CHEMTRNSDUCR"/>
    </dbReference>
    <dbReference type="SMART" id="SM00304">
        <property type="entry name" value="HAMP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00283">
        <property type="entry name" value="MA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50111">
        <property type="entry name" value="CHEMOTAXIS_TRANSDUC_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50885">
        <property type="entry name" value="HAMP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-0472">Membrane</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0807">Transducer</keyword>
    <keyword evidence="4" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="4" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="4">
        <location>
            <begin position="52"/>
            <end position="74"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="4">
        <location>
            <begin position="228"/>
            <end position="251"/>
        </location>
    </feature>
    <feature type="domain" description="HAMP" evidence="6">
        <location>
            <begin position="252"/>
            <end position="304"/>
        </location>
    </feature>
    <feature type="domain" description="Methyl-accepting transducer" evidence="5">
        <location>
            <begin position="309"/>
            <end position="538"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="3">
        <location>
            <begin position="583"/>
            <end position="635"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00029447"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00284"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="PROSITE" id="PS50111"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="PROSITE" id="PS50885"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="ABX38039.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="635" mass="66769" checksum="A28531EE6A2A1065" modified="2008-01-15" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="54" xmlns="http://uniprot.org/uniprot">
    <accession>A9BPE5</accession>
    <name>A9BPE5_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">FAD dependent oxidoreductase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_0166</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX32812.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012202105.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_0166"/>
    <dbReference type="PRIDE" id="A9BPE5"/>
    <dbReference type="EnsemblBacteria" id="ABX32812">
        <property type="protein sequence ID" value="ABX32812"/>
        <property type="gene ID" value="Daci_0166"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_0166"/>
    <dbReference type="eggNOG" id="COG0665">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_007884_4_2_4"/>
    <dbReference type="OMA" id="FMESYGT"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016491">
        <property type="term" value="F:oxidoreductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.50.50.60">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006076">
        <property type="entry name" value="FAD-dep_OxRdtase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036188">
        <property type="entry name" value="FAD/NAD-bd_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01266">
        <property type="entry name" value="DAO"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51905">
        <property type="entry name" value="SSF51905"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="DAO" evidence="1">
        <location>
            <begin position="8"/>
            <end position="356"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF01266"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX32812.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="385" mass="41054" checksum="17AEEEE70DD4035A" modified="2008-01-15" version="1">MMESQVLDFAVIGAGMAGASVAWRLAGGGASVLVLEREPQPGYHATGRSAAMFMESYGTAQIRALTRASRGFYSAPPEGFCEHALLQPRSVLYIGTAGQEPQLDEALAMYRRDGLRAERIDARQACALVPCLQESLLVGAVHDLDAMDIDVAELHQGFLRGMARAGARLRCGAELSGAEREVDGDGQGLWTLVLQDGSQVRARAVVNAAGAWADAVARLCGARPLGIEPRRRSAFTFAAPEGEDIHGWPAVIGVDESFYFKPDAGQLLGSPANADPVPPHDVVAEELDVAMGIDRIETLTRLRIRRPRHVWAGLRSFAPDDDFVIGWDAQREGFFWLAGQGGYGIQTAAGASAAAAALLMREPLPAELLAQGVDALRLSPARFAA</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="76" xmlns="http://uniprot.org/uniprot">
    <accession>A9BPK3</accession>
    <name>A9BPK3_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="8">Urea ABC transporter, ATP-binding protein UrtE</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="8" type="ordered locus">Daci_0224</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="9" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX32870.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012202163.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_0224"/>
    <dbReference type="PRIDE" id="A9BPK3"/>
    <dbReference type="EnsemblBacteria" id="ABX32870">
        <property type="protein sequence ID" value="ABX32870"/>
        <property type="gene ID" value="Daci_0224"/>
    </dbReference>
    <dbReference type="GeneID" id="60690628"/>
    <dbReference type="KEGG" id="dac:Daci_0224"/>
    <dbReference type="eggNOG" id="COG0410">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_000604_1_2_4"/>
    <dbReference type="OMA" id="HIMSIAE"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003593">
        <property type="entry name" value="AAA+_ATPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003439">
        <property type="entry name" value="ABC_transporter-like_ATP-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017780">
        <property type="entry name" value="ABC_transptr_urea_ATP-bd_UrtE"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43820:SF5">
        <property type="entry name" value="PTHR43820:SF5"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00005">
        <property type="entry name" value="ABC_tran"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00382">
        <property type="entry name" value="AAA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR03410">
        <property type="entry name" value="urea_trans_UrtE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50893">
        <property type="entry name" value="ABC_TRANSPORTER_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3 6 8" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="1" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="5" id="KW-0472">Membrane</keyword>
    <keyword evidence="2 6" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4" id="KW-1278">Translocase</keyword>
    <feature type="domain" description="ABC transporter" evidence="7">
        <location>
            <begin position="2"/>
            <end position="229"/>
        </location>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <begin position="34"/>
            <end position="41"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022967"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00434"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="PROSITE" id="PS50893"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="ABX32870.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="229" mass="25403" checksum="4B9A6C9A0A9E81F4" modified="2008-01-15" version="1">MLQVKDLYVAYGQSEALHGISFEGRENETVAIMGRNGMGKTTLFKSLMGVMPAKSGQITVAGQDVTKDESFRRVAKGIAYVPQGRMIFPTLTVEENIQTGLENAKTRQVPDDIYALFPVLWDMRRRKGGNLSGGQQQQLAIARALVTDPKVLLLDEPTEGIQPSIIKDIAKALNEIRKLRRITIVVSEQVLSFAMDVADRLFVIEGGRLVHETARADTDEQRIKSYLSV</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2021-09-29" version="52" xmlns="http://uniprot.org/uniprot">
    <accession>A9BPX6</accession>
    <name>A9BPX6_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Copper resistance B</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Daci_0449</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="4" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX33095.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_0449"/>
    <dbReference type="EnsemblBacteria" id="ABX33095">
        <property type="protein sequence ID" value="ABX33095"/>
        <property type="gene ID" value="Daci_0449"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_0449"/>
    <dbReference type="eggNOG" id="COG3667">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_042913_0_0_4"/>
    <dbReference type="OMA" id="WYGTTYN"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009279">
        <property type="term" value="C:cell outer membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005507">
        <property type="term" value="F:copper ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006878">
        <property type="term" value="P:cellular copper ion homeostasis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007939">
        <property type="entry name" value="Cu-R_B_prcur"/>
    </dbReference>
    <dbReference type="Pfam" id="PF05275">
        <property type="entry name" value="CopB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="2">
        <location>
            <begin position="1"/>
            <end position="24"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5002735668" evidence="2">
        <location>
            <begin position="25"/>
            <end position="326"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="29"/>
            <end position="96"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="29"/>
            <end position="47"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ABX33095.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="326" mass="35157" checksum="4B302BDE2DB807E0" modified="2008-01-15" version="1">MSKALPTRALATTLLALVSVAAQAQAQNDHAAHGQADAQTAAPSTQTVAPAADPHAGHATSASGSTAAPAMDHGNMQMQGGSAPPDARDPHGYSNGLTLGSGDYAVPGVPRLMLADEHRFFSLRGETLERRFTRKGDDSTAYNLQAWYGTTYNKAVVKAEGDIAKGKLEKSRTELLWGHAVAPYWDTQLGVRVDNGKGPSRQWLAFGIQGLAPYWFELKATGYVGSGGRTALRVEGSYELLLTQRLILEPRAELQFYGKDDPERGIGKGLAEASAGLRLRYEFSRQFAPYIGVERAGSFGRTADYVRAEGGRAQQTRWVAGVRFWF</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="60" xmlns="http://uniprot.org/uniprot">
    <accession>A9BQ52</accession>
    <name>A9BQ52_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Flagellar protein FliT</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_0621</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX33267.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012202553.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_0621"/>
    <dbReference type="PRIDE" id="A9BQ52"/>
    <dbReference type="EnsemblBacteria" id="ABX33267">
        <property type="protein sequence ID" value="ABX33267"/>
        <property type="gene ID" value="Daci_0621"/>
    </dbReference>
    <dbReference type="GeneID" id="60690962"/>
    <dbReference type="KEGG" id="dac:Daci_0621"/>
    <dbReference type="eggNOG" id="COG1516">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_155793_2_2_4"/>
    <dbReference type="OMA" id="VHLQEEY"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008622">
        <property type="entry name" value="FliT"/>
    </dbReference>
    <dbReference type="Pfam" id="PF05400">
        <property type="entry name" value="FliT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0966">Cell projection</keyword>
    <keyword evidence="2" id="KW-0969">Cilium</keyword>
    <keyword evidence="1" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="2" id="KW-0282">Flagellum</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022490"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX33267.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="99" mass="11593" checksum="D4CA9A46BD4DA9E2" modified="2008-01-15" version="1">MELTLIDFYRAIEDSSAKMLQAAQNKDWEGVTRYEGTCAVLIEQLRLKSHDEPLAPDQRKEKARIMQRILRNDAQIRTLAEPWLAQFEHMFDGQPHAMH</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="60" xmlns="http://uniprot.org/uniprot">
    <accession>A9BQJ0</accession>
    <name>A9BQJ0_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">NADPH-dependent FMN reductase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_0045</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX32692.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012201985.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_0045"/>
    <dbReference type="PRIDE" id="A9BQJ0"/>
    <dbReference type="EnsemblBacteria" id="ABX32692">
        <property type="protein sequence ID" value="ABX32692"/>
        <property type="gene ID" value="Daci_0045"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_0045"/>
    <dbReference type="eggNOG" id="COG0431">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_055322_4_1_4"/>
    <dbReference type="OMA" id="TPEYNNG"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016491">
        <property type="term" value="F:oxidoreductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.360">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029039">
        <property type="entry name" value="Flavoprotein-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005025">
        <property type="entry name" value="FMN_Rdtase-like"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03358">
        <property type="entry name" value="FMN_red"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52218">
        <property type="entry name" value="SSF52218"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="FMN_red" evidence="1">
        <location>
            <begin position="4"/>
            <end position="159"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF03358"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX32692.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="195" mass="20676" checksum="A80C5E022F9C18C3" modified="2008-01-15" version="1">MAAMQILIFAGSTRQQSHNRRLAAAAAGMARELGAQPTLLELSDFDIPMYNADLEASGTPPDVLRFKAALHSHPAWLICSPEYNGSYPALLKNAIDWASSPVAGDPVWSDGTLPFRGKVVGMASASPGGLGGLRAQSHLAPLLLNLQCWLAPVSHAVGQAGQAFDDAGRLQRPQDQLGMKAVLEQVLWAAQRLSA</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="58" xmlns="http://uniprot.org/uniprot">
    <accession>A9BQQ5</accession>
    <name>A9BQQ5_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Metallophosphoesterase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_0111</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX32757.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012202050.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_0111"/>
    <dbReference type="PRIDE" id="A9BQQ5"/>
    <dbReference type="EnsemblBacteria" id="ABX32757">
        <property type="protein sequence ID" value="ABX32757"/>
        <property type="gene ID" value="Daci_0111"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_0111"/>
    <dbReference type="eggNOG" id="COG1409">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_060372_3_0_4"/>
    <dbReference type="OMA" id="LHGHLHC"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016787">
        <property type="term" value="F:hydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.60.21.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004843">
        <property type="entry name" value="Calcineurin-like_PHP_ApaH"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029052">
        <property type="entry name" value="Metallo-depent_PP-like"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00149">
        <property type="entry name" value="Metallophos"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56300">
        <property type="entry name" value="SSF56300"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Metallophos" evidence="1">
        <location>
            <begin position="2"/>
            <end position="238"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF00149"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX32757.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="299" mass="32900" checksum="884364692C4BFEFC" modified="2008-01-15" version="1">MKIQLLSDLHLEAHPHFIAEPAPDADVLVLAGDIGSYQSGSLLQGEHFGLERFSPLPQYAGWPCPVIFVPGNHEYDMQDFDAAHARLRAACERMGMVWLERETAVLGGVRFVGTTLWSDYDAMSMHEGVTDLARLLKLREKAFRAANFYLHKTGGTRGGEPFLAEPMREQSLVCQQWLRQALARPFDGPTVAVTHFAPSLRSADPRYGLVPGTAGFCNVLDDLLPFADLWLHGHLHSPSDYVAEGLRDDGSAWRCRVVANPLGYARKGEQEGFFPRSTIELPAHVTAGAAEVADAPVRA</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="73" xmlns="http://uniprot.org/uniprot">
    <accession>A9BQR4</accession>
    <name>A9BQR4_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="6">Acyl-CoA dehydrogenase domain protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ordered locus">Daci_0120</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="7" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX32766.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012202059.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_0120"/>
    <dbReference type="PRIDE" id="A9BQR4"/>
    <dbReference type="EnsemblBacteria" id="ABX32766">
        <property type="protein sequence ID" value="ABX32766"/>
        <property type="gene ID" value="Daci_0120"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_0120"/>
    <dbReference type="eggNOG" id="COG1960">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_016513_0_0_4"/>
    <dbReference type="OMA" id="VEFDGTW"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016627">
        <property type="term" value="F:oxidoreductase activity, acting on the CH-CH group of donors"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006091">
        <property type="entry name" value="Acyl-CoA_Oxase/DH_mid-dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036250">
        <property type="entry name" value="AcylCo_DH-like_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009075">
        <property type="entry name" value="AcylCo_DH/oxidase_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009100">
        <property type="entry name" value="AcylCoA_DH/oxidase_NM_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041504">
        <property type="entry name" value="AidB_N"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00441">
        <property type="entry name" value="Acyl-CoA_dh_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02770">
        <property type="entry name" value="Acyl-CoA_dh_M"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF18158">
        <property type="entry name" value="AidB_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47203">
        <property type="entry name" value="SSF47203"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56645">
        <property type="entry name" value="SSF56645"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0274">FAD</keyword>
    <keyword evidence="1" id="KW-0285">Flavoprotein</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="AidB_N" evidence="5">
        <location>
            <begin position="20"/>
            <end position="175"/>
        </location>
    </feature>
    <feature type="domain" description="Acyl-CoA_dh_M" evidence="4">
        <location>
            <begin position="189"/>
            <end position="289"/>
        </location>
    </feature>
    <feature type="domain" description="Acyl-CoA_dh_1" evidence="3">
        <location>
            <begin position="299"/>
            <end position="456"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022630"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022827"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF00441"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="Pfam" id="PF02770"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="Pfam" id="PF18158"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="ABX32766.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="564" mass="61608" checksum="417628F3A033F313" modified="2008-01-15" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="69" xmlns="http://uniprot.org/uniprot">
    <accession>A9BQU0</accession>
    <name>A9BQU0_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="4">D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ordered locus">Daci_0249</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="5" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX32895.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012202188.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_0249"/>
    <dbReference type="PRIDE" id="A9BQU0"/>
    <dbReference type="EnsemblBacteria" id="ABX32895">
        <property type="protein sequence ID" value="ABX32895"/>
        <property type="gene ID" value="Daci_0249"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_0249"/>
    <dbReference type="eggNOG" id="COG1052">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_019796_1_2_4"/>
    <dbReference type="OMA" id="VHHQTLG"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051287">
        <property type="term" value="F:NAD binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016616">
        <property type="term" value="F:oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006139">
        <property type="entry name" value="D-isomer_2_OHA_DH_cat_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006140">
        <property type="entry name" value="D-isomer_DH_NAD-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036291">
        <property type="entry name" value="NAD(P)-bd_dom_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00389">
        <property type="entry name" value="2-Hacid_dh"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02826">
        <property type="entry name" value="2-Hacid_dh_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51735">
        <property type="entry name" value="SSF51735"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="1" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="2-Hacid_dh" evidence="2">
        <location>
            <begin position="17"/>
            <end position="315"/>
        </location>
    </feature>
    <feature type="domain" description="2-Hacid_dh_C" evidence="3">
        <location>
            <begin position="112"/>
            <end position="284"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="RuleBase" id="RU003719"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF00389"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF02826"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="ABX32895.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="328" mass="35366" checksum="FED9FC4E7FFB3F72" modified="2008-01-15" version="1">MATSRPRVLQFGKMPLPQLDAELAQAYEVTLLSEQPDRERFLAEHGAQFEYLVTSAAMGVPASVVQALPRLRFVSSFGVGFDALDRESLLRQGARVGYTPGVLDDCVADMAFALLLDAARGLSESDRFVRRGDWSRGRFGIRTRASGKRLGIFGMGRIGSTVARRAAGFDMEVAYHNRRPVEGSPHLYQPSLLELARWADFLVITAAGGDGTQHLVNAEVLDALGPQGFLINVARGSVVDEAALVQALQQGRIAGAGLDVFEDEPRPHAELLSQDNVVLAPHIASGTHETRRAMADLVLRNLAQFIATGRPEAEVPWSAAQQAATAAA</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="61" xmlns="http://uniprot.org/uniprot">
    <accession>A9BQY1</accession>
    <name>A9BQY1_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="7">Major facilitator superfamily MFS_1</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ordered locus">Daci_0290</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="8" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX32936.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_0290"/>
    <dbReference type="PRIDE" id="A9BQY1"/>
    <dbReference type="EnsemblBacteria" id="ABX32936">
        <property type="protein sequence ID" value="ABX32936"/>
        <property type="gene ID" value="Daci_0290"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_0290"/>
    <dbReference type="eggNOG" id="COG2271">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_001265_0_0_4"/>
    <dbReference type="OMA" id="KGQSICA"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0022857">
        <property type="term" value="F:transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.1250.20">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011701">
        <property type="entry name" value="MFS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020846">
        <property type="entry name" value="MFS_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036259">
        <property type="entry name" value="MFS_trans_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07690">
        <property type="entry name" value="MFS_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF103473">
        <property type="entry name" value="SSF103473"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50850">
        <property type="entry name" value="MFS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4 5" id="KW-0472">Membrane</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 5" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="3 5" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="53"/>
            <end position="72"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="88"/>
            <end position="107"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="113"/>
            <end position="136"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="148"/>
            <end position="168"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="180"/>
            <end position="200"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="247"/>
            <end position="268"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="280"/>
            <end position="302"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="314"/>
            <end position="331"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="337"/>
            <end position="358"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="365"/>
            <end position="391"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="403"/>
            <end position="423"/>
        </location>
    </feature>
    <feature type="domain" description="MFS" evidence="6">
        <location>
            <begin position="22"/>
            <end position="428"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="PROSITE" id="PS50850"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="ABX32936.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="437" mass="46513" checksum="E804C9AE23109546" modified="2008-01-15" version="1">MPARKVMKKLPAPLLARISWRLLPFLLLMYIMAFLDRANVGFAKVAFQADTGISDAAFAFGAGVFFAGYALLEVPSNLIMHRVGARMWMCRIMVTWGLVSAAMMFAHDQTTFYVLRFLLGVAEAGFFPGVILYLTYWFPAAHRAQAMGFFYFGAPLAFIFGSPLSGLLLELDGMGGWHGWQWLFAVEGLMAVAVGIWAYFHLDNRPADATWLSREDKALLQDILDSEERAKGSHGHSLLAALCQPRVLYLALIYLLIQASVYGVVFYLPSQVAGLLGTKVGLLVGVVSAIPWLCALLAAWWIPGHAERTGQPRGIASLTLVMAAVGMAASVSFSSPLLGVAALCLAAAGFIAVQPVFWTFPANTLAGAAAAGGIAFINSLGAVGGFIAPIVKNWAEGFFHSPAAGLYLLAGTTLLAAALVLGVRARLAPALAAPSAA</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-01-19" version="75" xmlns="http://uniprot.org/uniprot">
    <accession>A9BR29</accession>
    <name>A9BR29_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="7 15">NAD(P) transhydrogenase subunit beta</fullName>
            <ecNumber evidence="6 15">7.1.1.1</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="15">Nicotinamide nucleotide transhydrogenase subunit beta</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="18" type="ordered locus">Daci_0338</name>
    </gene>
    <organism evidence="18 19">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="18 19" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="19">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="19" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="19">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="2 15">The transhydrogenation between NADH and NADP is coupled to respiration and ATP hydrolysis and functions as a proton pump across the membrane.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1 15">
            <text>H(+)(in) + NAD(+) + NADPH = H(+)(out) + NADH + NADP(+)</text>
            <dbReference type="Rhea" id="RHEA:47992"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:57540"/>
            <dbReference type="ChEBI" id="CHEBI:57783"/>
            <dbReference type="ChEBI" id="CHEBI:57945"/>
            <dbReference type="ChEBI" id="CHEBI:58349"/>
            <dbReference type="EC" id="7.1.1.1"/>
        </reaction>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="4">Cell inner membrane</location>
            <topology evidence="4">Multi-pass membrane protein</topology>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="3">Membrane</location>
            <topology evidence="3">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="5 15">Belongs to the PNT beta subunit family.</text>
    </comment>
    <dbReference type="EC" id="7.1.1.1" evidence="6 15"/>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX32984.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012202277.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_0338"/>
    <dbReference type="EnsemblBacteria" id="ABX32984">
        <property type="protein sequence ID" value="ABX32984"/>
        <property type="gene ID" value="Daci_0338"/>
    </dbReference>
    <dbReference type="GeneID" id="60690743"/>
    <dbReference type="KEGG" id="dac:Daci_0338"/>
    <dbReference type="eggNOG" id="COG1282">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_007866_4_0_4"/>
    <dbReference type="OMA" id="KRGMSAG"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008750">
        <property type="term" value="F:NAD(P)+ transhydrogenase (AB-specific) activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0050661">
        <property type="term" value="F:NADP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029035">
        <property type="entry name" value="DHS-like_NAD/FAD-binding_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012136">
        <property type="entry name" value="NADH_DH_b"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR034300">
        <property type="entry name" value="PNTB-like"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02233">
        <property type="entry name" value="PNTB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF000204">
        <property type="entry name" value="PNTB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52467">
        <property type="entry name" value="SSF52467"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="9 15" id="KW-0997">Cell inner membrane</keyword>
    <keyword evidence="8 15" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="14 15 16" id="KW-0472">Membrane</keyword>
    <keyword evidence="15" id="KW-0520">NAD</keyword>
    <keyword evidence="11 15" id="KW-0521">NADP</keyword>
    <keyword evidence="18" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="19" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="12 15" id="KW-1278">Translocase</keyword>
    <keyword evidence="10 16" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="13 16" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="16">
        <location>
            <begin position="6"/>
            <end position="24"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="16">
        <location>
            <begin position="36"/>
            <end position="56"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="16">
        <location>
            <begin position="62"/>
            <end position="80"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="16">
        <location>
            <begin position="92"/>
            <end position="113"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="16">
        <location>
            <begin position="133"/>
            <end position="156"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="16">
        <location>
            <begin position="177"/>
            <end position="196"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="16">
        <location>
            <begin position="202"/>
            <end position="220"/>
        </location>
    </feature>
    <feature type="domain" description="PNTB" evidence="17">
        <location>
            <begin position="7"/>
            <end position="470"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00000006"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00003943"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00004429"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00007919"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00012943"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00014581"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00022519"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="ARBA" id="ARBA00022857"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="12">
        <source>
            <dbReference type="ARBA" id="ARBA00022967"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="13">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="14">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="15">
        <source>
            <dbReference type="PIRNR" id="PIRNR000204"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="16">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="17">
        <source>
            <dbReference type="Pfam" id="PF02233"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="18">
        <source>
            <dbReference type="EMBL" id="ABX32984.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="19">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="474" mass="49361" checksum="A7C722E3E925C686" modified="2008-01-15" version="1">MSMNLVTLLYLVASVCFIQALKGLSHPTTSIRGNLFGMAGMVIAVLTTAALIVQLAGGNALGLGWVLLGLLVGGTAGAVMAQRVEMTKMPELVAFMHSMIGLAAVFIAVAAVAEPWAFAITAKGGAIPGGNRVELALGAFIGAVTFTGSVIAFGKLSGKYKFRLFQGAPVQFKGQHALNAVLGLAAAFFVFGFWHSQSWMDIVLVIALGLLLGVLLIIPIGGADMPVVVSMLNSYSGWAAAGIGFSLNNSMLIIAGSLVGSSGAILSYIMCKAMNRSFFSVILGGFGGEATSAAAGSQQQRNVKSGSADDAAFVLGNAETVVIVPGYGLAVARAQHAVKELADKLTERGVTVKYAIHPVAGRMPGHMNVLLAEAEVPYDQVFEMEDINSEFGQADVAIILGANDVVNPAAHVKGSPIYGMPILEAYKAKTVIVNKRSMAAGYAGLDNELFYMDKTMMVFGDAKKVVEDMGKALE</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="70" xmlns="http://uniprot.org/uniprot">
    <accession>A9BR30</accession>
    <name>A9BR30_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Exodeoxyribonuclease III Xth</fullName>
            <ecNumber evidence="3">4.2.99.18</ecNumber>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Daci_0339</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="4" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the DNA repair enzymes AP/ExoA family.</text>
    </comment>
    <dbReference type="EC" id="4.2.99.18" evidence="3"/>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX32985.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012202278.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_0339"/>
    <dbReference type="PRIDE" id="A9BR30"/>
    <dbReference type="EnsemblBacteria" id="ABX32985">
        <property type="protein sequence ID" value="ABX32985"/>
        <property type="gene ID" value="Daci_0339"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_0339"/>
    <dbReference type="eggNOG" id="COG0708">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_027539_3_0_4"/>
    <dbReference type="OMA" id="DCICVQE"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008853">
        <property type="term" value="F:exodeoxyribonuclease III activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016829">
        <property type="term" value="F:lyase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006281">
        <property type="term" value="P:DNA repair"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.60.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004808">
        <property type="entry name" value="AP_endonuc_1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036691">
        <property type="entry name" value="Endo/exonu/phosph_ase_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005135">
        <property type="entry name" value="Endo/exonuclease/phosphatase"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR22748">
        <property type="entry name" value="PTHR22748"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03372">
        <property type="entry name" value="Exo_endo_phos"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56219">
        <property type="entry name" value="SSF56219"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00633">
        <property type="entry name" value="xth"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51435">
        <property type="entry name" value="AP_NUCLEASE_F1_4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-0456">Lyase</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Endo/exonuclease/phosphatase" evidence="2">
        <location>
            <begin position="6"/>
            <end position="256"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00007092"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF03372"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ABX32985.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="267" mass="30198" checksum="9F239A2C7B479CE1" modified="2008-01-15" version="1">MFKLTSLNLNGIRSASTKGVEAWIEATAPDCICVQEIKAQAADMTGRFELLAGLRGHFHYAEKKGYSGVGVYSRHEPSDVVVGFGSHEFDAEGRYVEARFDTPARKLSIISAYFPSGSSGELRQTAKFRFLAEMHEHLMRMKGEREFILCGDINIAHQQIDLKNWRSNQKNSGFTPEEREWMTKLLHKTDPTGGLVDVYRLLQPDTTDACYTWWSNRGQAYANNVGWRLDYHLATPAIAALARTEHIYKDVKFSDHAPVTIGYDMKV</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="85" xmlns="http://uniprot.org/uniprot">
    <accession>A9BR93</accession>
    <name>A9BR93_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="5 6">Transcription termination/antitermination protein NusG</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="5" type="primary">nusG</name>
        <name evidence="9" type="ordered locus">Daci_0505</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="9 10" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="10" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="5 6">Participates in transcription elongation, termination and antitermination.</text>
    </comment>
    <comment type="similarity">
        <text evidence="5 6">Belongs to the NusG family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX33151.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012202437.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_0505"/>
    <dbReference type="PRIDE" id="A9BR93"/>
    <dbReference type="EnsemblBacteria" id="ABX33151">
        <property type="protein sequence ID" value="ABX33151"/>
        <property type="gene ID" value="Daci_0505"/>
    </dbReference>
    <dbReference type="GeneID" id="60690847"/>
    <dbReference type="KEGG" id="dac:Daci_0505"/>
    <dbReference type="eggNOG" id="COG0250">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_067287_1_0_4"/>
    <dbReference type="OMA" id="DGPFNGF"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006354">
        <property type="term" value="P:DNA-templated transcription, elongation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006353">
        <property type="term" value="P:DNA-templated transcription, termination"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0032784">
        <property type="term" value="P:regulation of DNA-templated transcription, elongation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0031564">
        <property type="term" value="P:transcription antitermination"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.30.30.30">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.70.940">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00948">
        <property type="entry name" value="NusG"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005824">
        <property type="entry name" value="KOW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006645">
        <property type="entry name" value="NGN_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036735">
        <property type="entry name" value="NGN_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043425">
        <property type="entry name" value="NusG-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014722">
        <property type="entry name" value="Rib_L2_dom2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001062">
        <property type="entry name" value="Transcrpt_antiterm_NusG"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015869">
        <property type="entry name" value="Transcrpt_antiterm_NusG_bac_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008991">
        <property type="entry name" value="Translation_prot_SH3-like_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30265">
        <property type="entry name" value="PTHR30265"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30265:SF2">
        <property type="entry name" value="PTHR30265:SF2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00467">
        <property type="entry name" value="KOW"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02357">
        <property type="entry name" value="NusG"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00338">
        <property type="entry name" value="NUSGTNSCPFCT"/>
    </dbReference>
    <dbReference type="SMART" id="SM00739">
        <property type="entry name" value="KOW"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00738">
        <property type="entry name" value="NGN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50104">
        <property type="entry name" value="SSF50104"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF82679">
        <property type="entry name" value="SSF82679"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00922">
        <property type="entry name" value="nusG"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01014">
        <property type="entry name" value="NUSG"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4 5 6" id="KW-0804">Transcription</keyword>
    <keyword evidence="2 5 6" id="KW-0889">Transcription antitermination</keyword>
    <keyword evidence="3 5 6" id="KW-0805">Transcription regulation</keyword>
    <keyword evidence="1 5 6" id="KW-0806">Transcription termination</keyword>
    <feature type="domain" description="NGN" evidence="7">
        <location>
            <begin position="19"/>
            <end position="128"/>
        </location>
    </feature>
    <feature type="domain" description="KOW" evidence="8">
        <location>
            <begin position="140"/>
            <end position="167"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022472"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022814"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023015"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023163"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00948"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="RuleBase" id="RU000538"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="SMART" id="SM00738"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="SMART" id="SM00739"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="ABX33151.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="194" mass="22061" checksum="1B3C41FE238E9B2F" modified="2008-01-15" version="1">MDAVETGVNDGGAAPANPDLRWYIVHAYSGMEKAVERNIIERIARSDMQSKFGRILVPTEEVVEMKNGQRRTTERRLFPGYVFVEMVMDDDTWHLVKHTSKVTGFVGGAKNRPAPISEEEVRKIVSQMQEGTEKPRHKVEFMPGELVRVKEGPFTDFNGSVEEVNYEKSRLRVSVMIFGRSTPVELEFAQVEKT</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="77" xmlns="http://uniprot.org/uniprot">
    <accession>A9BRN0</accession>
    <name>A9BRN0_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Transcriptional regulator, IclR family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ordered locus">Daci_0951</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="6" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX33597.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012202883.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_0951"/>
    <dbReference type="PRIDE" id="A9BRN0"/>
    <dbReference type="EnsemblBacteria" id="ABX33597">
        <property type="protein sequence ID" value="ABX33597"/>
        <property type="gene ID" value="Daci_0951"/>
    </dbReference>
    <dbReference type="GeneID" id="60685516"/>
    <dbReference type="KEGG" id="dac:Daci_0951"/>
    <dbReference type="eggNOG" id="COG1414">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_062618_0_1_4"/>
    <dbReference type="OMA" id="WPLRMHL"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006355">
        <property type="term" value="P:regulation of transcription, DNA-templated"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.450.40">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029016">
        <property type="entry name" value="GAF-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014757">
        <property type="entry name" value="Tscrpt_reg_IclR_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005471">
        <property type="entry name" value="Tscrpt_reg_IclR_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036390">
        <property type="entry name" value="WH_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF09339">
        <property type="entry name" value="HTH_IclR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01614">
        <property type="entry name" value="IclR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00346">
        <property type="entry name" value="HTH_ICLR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46785">
        <property type="entry name" value="SSF46785"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51077">
        <property type="entry name" value="HTH_ICLR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51078">
        <property type="entry name" value="ICLR_ED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0804">Transcription</keyword>
    <keyword evidence="1" id="KW-0805">Transcription regulation</keyword>
    <feature type="domain" description="HTH iclR-type" evidence="3">
        <location>
            <begin position="17"/>
            <end position="77"/>
        </location>
    </feature>
    <feature type="domain" description="IclR-ED" evidence="4">
        <location>
            <begin position="78"/>
            <end position="261"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023015"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023163"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="PROSITE" id="PS51077"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="PROSITE" id="PS51078"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="ABX33597.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="268" mass="29330" checksum="395D8BD2E38BC0B3" modified="2008-01-15" version="1">MSDTSETLSNDNDRYTVPALERGLRLLACFTPSQPVWSAPDLARTLALPRSTVFRMLTTLENMGYLQRSGTEYRLGLSVLRLGYDYLSTQPLAQLAEPVLQALCERLGFTTNLALLDGTSVVYVARIAPAGAFQGAVRVGSRLPAHATVLGRALLQDMDADQLRELFGGSELPQFSESTPRDVQQLQQLLLQDRERGYAMGEGFYEPGVSSIAAPVRDAQGRIIAGLGMAVAFTEIAPGRMAHWVEQVREAAVELTGHLRTQHPGFLR</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="65" xmlns="http://uniprot.org/uniprot">
    <accession>A9BRR3</accession>
    <name>A9BRR3_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Myo-inositol catabolism IolB domain protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_0984</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX33630.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012202916.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_0984"/>
    <dbReference type="PRIDE" id="A9BRR3"/>
    <dbReference type="EnsemblBacteria" id="ABX33630">
        <property type="protein sequence ID" value="ABX33630"/>
        <property type="gene ID" value="Daci_0984"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_0984"/>
    <dbReference type="eggNOG" id="COG3718">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_066438_1_0_4"/>
    <dbReference type="OMA" id="HGYDLYY"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008880">
        <property type="term" value="F:glucuronate isomerase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0019310">
        <property type="term" value="P:inositol catabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.120.10">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR024203">
        <property type="entry name" value="Deoxy-glucuronate_isom_IolB"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR021120">
        <property type="entry name" value="KduI/IolB_isomerase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014710">
        <property type="entry name" value="RmlC-like_jellyroll"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011051">
        <property type="entry name" value="RmlC_Cupin_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR39193">
        <property type="entry name" value="PTHR39193"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04962">
        <property type="entry name" value="KduI"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF036628">
        <property type="entry name" value="IolB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51182">
        <property type="entry name" value="SSF51182"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR04378">
        <property type="entry name" value="myo_inos_iolB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0413">Isomerase</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023235"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX33630.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="267" mass="29108" checksum="DC0F8D2337F98AE3" modified="2008-01-15" version="1">MSLLVKAAPGRVVTDITPASAGWKHIHFKALRLQAGEQEELSTGPLEYCITVLTGQVDVQVGSQAFSALGSRASVFEESAPTAVYVPPGQSLRITARGPADVALSAAPATGRHATRVIAPESMRRSVRGQGSNTRHVCDILPETEAAESLLVVEVITPAGNSSSYPPHKHDSADPAAPDAETVLEETYFHLLNPSQGFAFQRVYTDDRSIDQAMAVEHRDTVMVPRGYHPCVAPHGYDLYYLNTMAGPERRWAFRNDPAHEWMLRPR</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="64" xmlns="http://uniprot.org/uniprot">
    <accession>A9BRT3</accession>
    <name>A9BRT3_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="6">Putative esterase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ordered locus">Daci_1004</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="7" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="3">Belongs to the Fes family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX33650.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012202936.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_1004"/>
    <dbReference type="ESTHER" id="delas-a9brt3">
        <property type="family name" value="A85-IroE-IroD-Fes-Yiel"/>
    </dbReference>
    <dbReference type="PRIDE" id="A9BRT3"/>
    <dbReference type="EnsemblBacteria" id="ABX33650">
        <property type="protein sequence ID" value="ABX33650"/>
        <property type="gene ID" value="Daci_1004"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_1004"/>
    <dbReference type="eggNOG" id="COG2382">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_024314_3_1_4"/>
    <dbReference type="OMA" id="VEQCPID"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008849">
        <property type="term" value="F:enterochelin esterase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005506">
        <property type="term" value="F:iron ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006826">
        <property type="term" value="P:iron ion transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.40.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.1820">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029058">
        <property type="entry name" value="AB_hydrolase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR021764">
        <property type="entry name" value="Enterochelin_esterase_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000801">
        <property type="entry name" value="Esterase-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013783">
        <property type="entry name" value="Ig-like_fold"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014756">
        <property type="entry name" value="Ig_E-set"/>
    </dbReference>
    <dbReference type="Pfam" id="PF11806">
        <property type="entry name" value="DUF3327"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00756">
        <property type="entry name" value="Esterase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53474">
        <property type="entry name" value="SSF53474"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF81296">
        <property type="entry name" value="SSF81296"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="4">
        <location>
            <begin position="1"/>
            <end position="25"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5002735022" evidence="4">
        <location>
            <begin position="26"/>
            <end position="591"/>
        </location>
    </feature>
    <feature type="domain" description="DUF3327" evidence="5">
        <location>
            <begin position="211"/>
            <end position="328"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004496"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022490"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00024201"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="Pfam" id="PF11806"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="ABX33650.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="591" mass="62799" checksum="A32280FB31651749" modified="2008-01-15" version="1"> </sequence>
</entry>
<entry dataset="Swiss-Prot" created="2009-04-14" modified="2022-08-03" version="82" xmlns="http://uniprot.org/uniprot">
    <accession>A9BRW2</accession>
    <name>RL24_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">50S ribosomal protein L24</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="1" type="primary">rplX</name>
        <name type="ordered locus">Daci_1033</name>
    </gene>
    <organism>
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference key="1">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain>DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="1">One of two assembly initiator proteins, it binds directly to the 5'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit.</text>
    </comment>
    <comment type="function">
        <text evidence="1">One of the proteins that surrounds the polypeptide exit tunnel on the outside of the subunit.</text>
    </comment>
    <comment type="subunit">
        <text evidence="1">Part of the 50S ribosomal subunit.</text>
    </comment>
    <comment type="similarity">
        <text evidence="1">Belongs to the universal ribosomal protein uL24 family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX33679.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012202965.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A9BRW2"/>
    <dbReference type="SMR" id="A9BRW2"/>
    <dbReference type="STRING" id="398578.Daci_1033"/>
    <dbReference type="PRIDE" id="A9BRW2"/>
    <dbReference type="EnsemblBacteria" id="ABX33679">
        <property type="protein sequence ID" value="ABX33679"/>
        <property type="gene ID" value="Daci_1033"/>
    </dbReference>
    <dbReference type="GeneID" id="60685595"/>
    <dbReference type="KEGG" id="dac:Daci_1033"/>
    <dbReference type="eggNOG" id="COG0198">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_093315_2_2_4"/>
    <dbReference type="OMA" id="HVKPTQE"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005840">
        <property type="term" value="C:ribosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0019843">
        <property type="term" value="F:rRNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003735">
        <property type="term" value="F:structural constituent of ribosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006412">
        <property type="term" value="P:translation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd06089">
        <property type="entry name" value="KOW_RPL26"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.30.30.30">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01326_B">
        <property type="entry name" value="Ribosomal_L24_B"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005824">
        <property type="entry name" value="KOW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041988">
        <property type="entry name" value="KOW_RPL26/RPL24"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014722">
        <property type="entry name" value="Rib_L2_dom2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003256">
        <property type="entry name" value="Ribosomal_L24"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005825">
        <property type="entry name" value="Ribosomal_L24/26_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008991">
        <property type="entry name" value="Translation_prot_SH3-like_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR12903">
        <property type="entry name" value="PTHR12903"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF17136">
        <property type="entry name" value="ribosomal_L24"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00739">
        <property type="entry name" value="KOW"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50104">
        <property type="entry name" value="SSF50104"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01079">
        <property type="entry name" value="rplX_bact"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01108">
        <property type="entry name" value="RIBOSOMAL_L24"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword id="KW-1185">Reference proteome</keyword>
    <keyword id="KW-0687">Ribonucleoprotein</keyword>
    <keyword id="KW-0689">Ribosomal protein</keyword>
    <keyword id="KW-0694">RNA-binding</keyword>
    <keyword id="KW-0699">rRNA-binding</keyword>
    <feature type="chain" id="PRO_1000141987" description="50S ribosomal protein L24">
        <location>
            <begin position="1"/>
            <end position="106"/>
        </location>
    </feature>
    <evidence type="ECO:0000255" key="1">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01326"/>
        </source>
    </evidence>
    <sequence length="106" mass="11316" checksum="00D9E06FF59EB636" modified="2008-01-15" version="1">MNKIRKGDQIIVLTGRDKGKQGVVSARKDDSHLLIDGINMVKKHVKPNPMKGTTGGIVEKAMPIHQSNVAIFNAATGKADRVGIKVQADGTRVRVFKSSGAEIKAA</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="66" xmlns="http://uniprot.org/uniprot">
    <accession>A9BS04</accession>
    <name>A9BS04_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Glutamine amidotransferase of anthranilate synthase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_0768</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX33414.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012202700.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_0768"/>
    <dbReference type="MEROPS" id="C26.959"/>
    <dbReference type="PRIDE" id="A9BS04"/>
    <dbReference type="EnsemblBacteria" id="ABX33414">
        <property type="protein sequence ID" value="ABX33414"/>
        <property type="gene ID" value="Daci_0768"/>
    </dbReference>
    <dbReference type="GeneID" id="60685325"/>
    <dbReference type="KEGG" id="dac:Daci_0768"/>
    <dbReference type="eggNOG" id="COG0512">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_014340_1_2_4"/>
    <dbReference type="OMA" id="TEHGHAM"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016740">
        <property type="term" value="F:transferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006541">
        <property type="term" value="P:glutamine metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd01743">
        <property type="entry name" value="GATase1_Anthranilate_Synthase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.880">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029062">
        <property type="entry name" value="Class_I_gatase-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017926">
        <property type="entry name" value="GATASE"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006221">
        <property type="entry name" value="TrpG/PapA_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00117">
        <property type="entry name" value="GATase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52317">
        <property type="entry name" value="SSF52317"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00566">
        <property type="entry name" value="trpG_papA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0315">Glutamine amidotransferase</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="GATase" evidence="1">
        <location>
            <begin position="6"/>
            <end position="192"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF00117"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX33414.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="195" mass="21202" checksum="0103903B053C158A" modified="2008-01-15" version="1">MTRLLMIDNYDSFTYNIVQYFGELGADVTVVRNDEATLDEVIALVEREKIDRLVISPGPCSPAEAGISVAAIQHFAGRLPILGVCLGHQSIGAAFGGDIVRAGQQMHGKTSVITTDRKGVFADLPEQFTVNRYHSLAIARSSLPECLEITATSEDGEIQGVRHTSLAIEGVQFHPESILTEHGHAMLKNFLEQKA</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="68" xmlns="http://uniprot.org/uniprot">
    <accession>A9BS45</accession>
    <name>A9BS45_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Phenylacetate-coenzyme A ligase</fullName>
            <ecNumber evidence="1">6.2.1.30</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="1">Phenylacetyl-CoA ligase</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="4" type="ordered locus">Daci_0809</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="5" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="1">Catalyzes the activation of phenylacetic acid (PA) to phenylacetyl-CoA (PA-CoA).</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>2-phenylacetate + ATP + CoA = AMP + diphosphate + phenylacetyl-CoA</text>
            <dbReference type="Rhea" id="RHEA:20956"/>
            <dbReference type="ChEBI" id="CHEBI:18401"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:33019"/>
            <dbReference type="ChEBI" id="CHEBI:57287"/>
            <dbReference type="ChEBI" id="CHEBI:57390"/>
            <dbReference type="ChEBI" id="CHEBI:456215"/>
            <dbReference type="EC" id="6.2.1.30"/>
        </reaction>
    </comment>
    <comment type="pathway">
        <text evidence="1">Aromatic compound metabolism; phenylacetate degradation.</text>
    </comment>
    <comment type="similarity">
        <text evidence="1">Belongs to the phenylacetyl-CoA ligase family.</text>
    </comment>
    <dbReference type="EC" id="6.2.1.30" evidence="1"/>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX33455.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012202741.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_0809"/>
    <dbReference type="PRIDE" id="A9BS45"/>
    <dbReference type="EnsemblBacteria" id="ABX33455">
        <property type="protein sequence ID" value="ABX33455"/>
        <property type="gene ID" value="Daci_0809"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_0809"/>
    <dbReference type="eggNOG" id="COG1541">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_035301_1_1_4"/>
    <dbReference type="OMA" id="IQNTHGY"/>
    <dbReference type="UniPathway" id="UPA00930"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000166">
        <property type="term" value="F:nucleotide binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0047475">
        <property type="term" value="F:phenylacetate-CoA ligase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0010124">
        <property type="term" value="P:phenylacetate catabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd05913">
        <property type="entry name" value="PaaK"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.300.30">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.12780">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045851">
        <property type="entry name" value="AMP-bd_C_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR028154">
        <property type="entry name" value="AMP-dep_Lig_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000873">
        <property type="entry name" value="AMP-dep_Synth/Lig"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR042099">
        <property type="entry name" value="ANL_N_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011880">
        <property type="entry name" value="PA_CoA_ligase"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00501">
        <property type="entry name" value="AMP-binding"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF14535">
        <property type="entry name" value="AMP-binding_C_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF006444">
        <property type="entry name" value="PaaK"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR02155">
        <property type="entry name" value="PA_CoA_ligase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="1 4" id="KW-0436">Ligase</keyword>
    <keyword evidence="1" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="AMP-binding" evidence="2">
        <location>
            <begin position="90"/>
            <end position="294"/>
        </location>
    </feature>
    <feature type="domain" description="AMP-binding_C_2" evidence="3">
        <location>
            <begin position="340"/>
            <end position="437"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="PIRNR" id="PIRNR006444"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF00501"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF14535"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="ABX33455.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="439" mass="49111" checksum="32BE6A27F63F25A8" modified="2008-01-15" version="1">MNKDLRPAPGELDPIETASRDEIASLQLQRLRWSLQHAYDHVPHYRRAFDEKGVHPSDLRTLSDLARFPFTTKKDLRENYPFGMFAVPRQKVARVHASSGTTGKPTVVGYTLNDIDNWANLVARSIRAAGGRPGDMVHVAYGYGLFTGGLGAHYGAERAGCTVVPMSGGQTEKQVQLIQDFRPDIIMVTPSYMQVIVEEMQRQGMDPRESSLKIGIFGAEPWTEAMRREIESKAGLDAVDIYGLSEVMGPGVASECVESKDGPVIWEDHFYPEIIDPDTGEVLPDGSEGELVFTSLSKEAMPIIRYRTRDLTRLLAPTSRSFRRMGKIVGRSDDMMIIRGVNVFPTQIEEIVLANASLTGLYQMHISREGLLDTVEVHCELQPQRRGLGDAERGEIAQWVQQRIKTLVGISTAVRVFDPDTIERTQTGKARRVYDKRPR</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="59" xmlns="http://uniprot.org/uniprot">
    <accession>A9BSA1</accession>
    <name>A9BSA1_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Extracellular ligand-binding receptor</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ordered locus">Daci_1070</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="6" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the leucine-binding protein family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX33715.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012203001.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_1070"/>
    <dbReference type="PRIDE" id="A9BSA1"/>
    <dbReference type="EnsemblBacteria" id="ABX33715">
        <property type="protein sequence ID" value="ABX33715"/>
        <property type="gene ID" value="Daci_1070"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_1070"/>
    <dbReference type="eggNOG" id="COG0683">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_027128_3_0_4"/>
    <dbReference type="OMA" id="LNQDYAH"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006865">
        <property type="term" value="P:amino acid transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR028081">
        <property type="entry name" value="Leu-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000709">
        <property type="entry name" value="Leu_Ile_Val-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR028082">
        <property type="entry name" value="Peripla_BP_I"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13458">
        <property type="entry name" value="Peripla_BP_6"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00337">
        <property type="entry name" value="LEUILEVALBP"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53822">
        <property type="entry name" value="SSF53822"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2" id="KW-0029">Amino-acid transport</keyword>
    <keyword evidence="5" id="KW-0675">Receptor</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0732">Signal</keyword>
    <keyword evidence="2" id="KW-0813">Transport</keyword>
    <feature type="signal peptide" evidence="3">
        <location>
            <begin position="1"/>
            <end position="30"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5002732462" evidence="3">
        <location>
            <begin position="31"/>
            <end position="427"/>
        </location>
    </feature>
    <feature type="domain" description="Peripla_BP_6" evidence="4">
        <location>
            <begin position="36"/>
            <end position="375"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00010062"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022970"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="Pfam" id="PF13458"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="ABX33715.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="427" mass="46547" checksum="FAA139D2EDA252EE" modified="2008-01-15" version="1">MPIRRHCIRRYSQPSIVLATALLCATAAHAQGGETFKIAFIDPLSGPFVSTGELMRDHVQYAVEDVNAKGGLFNGAKLQLLQFDSKLSAQESQAALQAAIDQGARVVVTGGSGSSVVAALVQAASRHNQRNPGKEVLVLNHSSIDPELTGKACSFWHFMFDANTAMRMQAIASYIKTQPGIRKVYLLNQDYAHGKQWAAYGRQMVSAARPDIQFTGEMLHPIGRVKDFAPYVAKIKETGADSVITGNWGQDLTLLLKSAADSGYDLRYFNHSAGGMPGTVTSFAQTRIGQLTWVAEWHPGQAGRPLADARAQEYKARMGKDFMAPRMDLVPRMLAAAMAKAQSTEPVKIALAMEDLQMDTVVGPVRMRGKDHQLLLPQVVNTIAPVDGKLVKAGWEGTNYGFRTDAVYTPEQVELPTYCQMKRPGGR</sequence>
</entry>
<entry dataset="Swiss-Prot" created="2009-03-24" modified="2022-08-03" version="79" xmlns="http://uniprot.org/uniprot">
    <accession>A9BSM4</accession>
    <name>PYRC_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Dihydroorotase</fullName>
            <shortName evidence="1">DHOase</shortName>
            <ecNumber evidence="1">3.5.2.3</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="1" type="primary">pyrC</name>
        <name type="ordered locus">Daci_1385</name>
    </gene>
    <organism>
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference key="1">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain>DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="1">Catalyzes the reversible cyclization of carbamoyl aspartate to dihydroorotate.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>(S)-dihydroorotate + H2O = H(+) + N-carbamoyl-L-aspartate</text>
            <dbReference type="Rhea" id="RHEA:24296"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:30864"/>
            <dbReference type="ChEBI" id="CHEBI:32814"/>
            <dbReference type="EC" id="3.5.2.3"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </cofactor>
        <text evidence="1">Binds 2 Zn(2+) ions per subunit.</text>
    </comment>
    <comment type="pathway">
        <text evidence="1">Pyrimidine metabolism; UMP biosynthesis via de novo pathway; (S)-dihydroorotate from bicarbonate: step 3/3.</text>
    </comment>
    <comment type="subunit">
        <text evidence="1">Homodimer.</text>
    </comment>
    <comment type="similarity">
        <text evidence="1">Belongs to the metallo-dependent hydrolases superfamily. DHOase family. Class II DHOase subfamily.</text>
    </comment>
    <dbReference type="EC" id="3.5.2.3" evidence="1"/>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX34029.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012203315.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A9BSM4"/>
    <dbReference type="SMR" id="A9BSM4"/>
    <dbReference type="STRING" id="398578.Daci_1385"/>
    <dbReference type="PRIDE" id="A9BSM4"/>
    <dbReference type="EnsemblBacteria" id="ABX34029">
        <property type="protein sequence ID" value="ABX34029"/>
        <property type="gene ID" value="Daci_1385"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_1385"/>
    <dbReference type="eggNOG" id="COG0418">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_041558_1_0_4"/>
    <dbReference type="OMA" id="TLHHISM"/>
    <dbReference type="UniPathway" id="UPA00070">
        <property type="reaction ID" value="UER00117"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004151">
        <property type="term" value="F:dihydroorotase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008270">
        <property type="term" value="F:zinc ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0044205">
        <property type="term" value="P:'de novo' UMP biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniPathway"/>
    </dbReference>
    <dbReference type="GO" id="GO:0019856">
        <property type="term" value="P:pyrimidine nucleobase biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd01294">
        <property type="entry name" value="DHOase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00219">
        <property type="entry name" value="PyrC_classII"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006680">
        <property type="entry name" value="Amidohydro-rel"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004721">
        <property type="entry name" value="DHOdimr"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002195">
        <property type="entry name" value="Dihydroorotase_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR032466">
        <property type="entry name" value="Metal_Hydrolase"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43137">
        <property type="entry name" value="PTHR43137"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01979">
        <property type="entry name" value="Amidohydro_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF001237">
        <property type="entry name" value="DHOdimr"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51556">
        <property type="entry name" value="SSF51556"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00856">
        <property type="entry name" value="pyrC_dimer"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00482">
        <property type="entry name" value="DIHYDROOROTASE_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00483">
        <property type="entry name" value="DIHYDROOROTASE_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword id="KW-0378">Hydrolase</keyword>
    <keyword id="KW-0479">Metal-binding</keyword>
    <keyword id="KW-0665">Pyrimidine biosynthesis</keyword>
    <keyword id="KW-1185">Reference proteome</keyword>
    <keyword id="KW-0862">Zinc</keyword>
    <feature type="chain" id="PRO_1000100040" description="Dihydroorotase">
        <location>
            <begin position="1"/>
            <end position="346"/>
        </location>
    </feature>
    <feature type="active site" evidence="1">
        <location>
            <position position="250"/>
        </location>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <position position="17"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
            <label>1</label>
        </ligand>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <begin position="19"/>
            <end position="21"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <position position="19"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
            <label>1</label>
        </ligand>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <position position="45"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" description="via carbamate group" evidence="1">
        <location>
            <position position="102"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
            <label>1</label>
        </ligand>
    </feature>
    <feature type="binding site" description="via carbamate group" evidence="1">
        <location>
            <position position="102"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
            <label>2</label>
        </ligand>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <position position="139"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <position position="139"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
            <label>2</label>
        </ligand>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <position position="177"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
            <label>2</label>
        </ligand>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <position position="222"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <position position="250"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
            <label>1</label>
        </ligand>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <position position="254"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <position position="266"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="modified residue" description="N6-carboxylysine" evidence="1">
        <location>
            <position position="102"/>
        </location>
    </feature>
    <evidence type="ECO:0000255" key="1">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00219"/>
        </source>
    </evidence>
    <sequence length="346" mass="38233" checksum="00052EA2F4B1DF32" modified="2008-01-15" version="1">MTASTNTLTITRPDDWHLHVRDGEAMRSVVPHTAAQFARAIIMPNLKPPVTTAEQALEYKQRILSAVPEGMAFEPLMTLYLTDNLPPEEIVRAKAAGVVACKLYPAGATTNSDHGVTDLRKIYPTLEAMQREGLLLLVHGEVTSSDIDLFDREAAFIDQHLIPLRRDFPELKIVFEHITTREAAQYVTEADRFVGATITPQHLLFNRNAIFTGGIRPHYYCLPVLKRETHRLALVEAATSGLPKFFLGTDSAPHAAHLKEHATGCAGCYSAHAAIEMYAEAFDNAGALDKLEAFASFNGPDFYSLPRNTGKITLVRESWTPPDSFAFGEAQLKPLRSGEALPWKLV</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="77" xmlns="http://uniprot.org/uniprot">
    <accession>A9BSN1</accession>
    <name>A9BSN1_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Transcriptional regulator, LysR family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Daci_1392</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="4" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the LysR transcriptional regulatory family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX34036.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012203322.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_1392"/>
    <dbReference type="PRIDE" id="A9BSN1"/>
    <dbReference type="EnsemblBacteria" id="ABX34036">
        <property type="protein sequence ID" value="ABX34036"/>
        <property type="gene ID" value="Daci_1392"/>
    </dbReference>
    <dbReference type="GeneID" id="60685951"/>
    <dbReference type="KEGG" id="dac:Daci_1392"/>
    <dbReference type="eggNOG" id="COG0583">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_039613_16_2_4"/>
    <dbReference type="OMA" id="PSGYGQM"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003700">
        <property type="term" value="F:DNA-binding transcription factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005119">
        <property type="entry name" value="LysR_subst-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000847">
        <property type="entry name" value="Tscrpt_reg_HTH_LysR"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036390">
        <property type="entry name" value="WH_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00126">
        <property type="entry name" value="HTH_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03466">
        <property type="entry name" value="LysR_substrate"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46785">
        <property type="entry name" value="SSF46785"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50931">
        <property type="entry name" value="HTH_LYSR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HTH lysR-type" evidence="2">
        <location>
            <begin position="1"/>
            <end position="58"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00009437"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS50931"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ABX34036.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="305" mass="33726" checksum="626BE8D3F77B101F" modified="2008-01-15" version="1">MDLNSLTLLVEIIDSGNLSQAARKLKMTRANVSYHLTQLEKSVGVQLVRRTTRRVEPTEVGMRMYEHGRAIQNEMMSARETITSLGQGMAGRVGLSVPSGYGQIVMSDWLIEFKRLYPGIVLDVLFENRADHLRDEVDIAIRVIQEPPLSVIARSLGNVHYVACASREYAQQHGLPTTLYELRNSPLITAGVMGRQLRLSAYQGTDRQEVLLAPTMISEHFPFLRQGILAGLGVGLVPDYVVQDKVASGEVVLTLQEYRLSIFGTHMYLLYLPDRHQTRAVRTCIDFLLAKAGQGGSGSGDAAAT</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="70" xmlns="http://uniprot.org/uniprot">
    <accession>A9BSX3</accession>
    <name>A9BSX3_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="3">3-Oxoacyl-(Acyl-carrier-protein (ACP)) synthase III domain protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Daci_1690</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="4" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX34333.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
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        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_1690"/>
    <dbReference type="PRIDE" id="A9BSX3"/>
    <dbReference type="EnsemblBacteria" id="ABX34333">
        <property type="protein sequence ID" value="ABX34333"/>
        <property type="gene ID" value="Daci_1690"/>
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    <dbReference type="KEGG" id="dac:Daci_1690"/>
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        <property type="taxonomic scope" value="Bacteria"/>
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    <dbReference type="OMA" id="DYPVCMQ"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016746">
        <property type="term" value="F:acyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
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        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.47.10">
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    </dbReference>
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        <property type="entry name" value="ACP_syn_III_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016084">
        <property type="entry name" value="Haem_Oase-like_multi-hlx"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016039">
        <property type="entry name" value="Thiolase-like"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08541">
        <property type="entry name" value="ACP_syn_III_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48613">
        <property type="entry name" value="SSF48613"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53901">
        <property type="entry name" value="SSF53901"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="ACP_syn_III_C" evidence="2">
        <location>
            <begin position="286"/>
            <end position="358"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="383"/>
            <end position="405"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF08541"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ABX34333.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="650" mass="70669" checksum="356F41CE96646FBF" modified="2008-01-15" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="39" xmlns="http://uniprot.org/uniprot">
    <accession>A9BSY9</accession>
    <name>A9BSY9_DELAS</name>
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        </submittedName>
    </protein>
    <gene>
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    <organism evidence="1 2">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
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            <taxon>Comamonadaceae</taxon>
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        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
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            <authorList>
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                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="2" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX34349.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="PRIDE" id="A9BSY9"/>
    <dbReference type="EnsemblBacteria" id="ABX34349">
        <property type="protein sequence ID" value="ABX34349"/>
        <property type="gene ID" value="Daci_1706"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_1706"/>
    <dbReference type="eggNOG" id="ENOG5032UKY">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_105444_1_0_4"/>
    <dbReference type="OMA" id="VERWCAS"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ABX34349.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="194" mass="21940" checksum="93A25A34C6CF6AA2" modified="2008-01-15" version="1">MRDAHAMTSGHNAPYVPASTPRSADVILYLDLDGVVHHEKVLWHPRKGIYMSPYQAPGHALFEWLPILEEELAPYPSVALVLSSTWCIRPGYAKTLQRLPERLRARFIGGTYHKRVHGADPWNLASFQSTPRGMQILADVQRRKPRHWIALDDDIEDWPPLAISNLVACDGTTGLSDPEVRHQLRQQLRQSATA</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2021-06-02" version="33" xmlns="http://uniprot.org/uniprot">
    <accession>A9BSZ2</accession>
    <name>A9BSZ2_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Daci_1709</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="2" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX34352.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012203637.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="ABX34352">
        <property type="protein sequence ID" value="ABX34352"/>
        <property type="gene ID" value="Daci_1709"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_1709"/>
    <dbReference type="HOGENOM" id="CLU_2192717_0_0_4"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ABX34352.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="108" mass="12346" checksum="1E66B81810321C12" modified="2008-01-15" version="1">MNSHARKVRELWGAHLSIDDQELLLLPRTLSLDTDSTSLEGHRENLALLLESRDLRRIPVSESSFVYDEVAFQWLAQGRLDFNRQTFREACKREGLLDGDGELMGCSV</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="67" xmlns="http://uniprot.org/uniprot">
    <accession>A9BT71</accession>
    <name>A9BT71_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Alpha/beta hydrolase fold</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_1996</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
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                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
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            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX34636.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012203921.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_1996"/>
    <dbReference type="PRIDE" id="A9BT71"/>
    <dbReference type="EnsemblBacteria" id="ABX34636">
        <property type="protein sequence ID" value="ABX34636"/>
        <property type="gene ID" value="Daci_1996"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_1996"/>
    <dbReference type="eggNOG" id="COG0596">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_020336_50_3_4"/>
    <dbReference type="OMA" id="WGWQHAA"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016787">
        <property type="term" value="F:hydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.1820">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029058">
        <property type="entry name" value="AB_hydrolase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000073">
        <property type="entry name" value="AB_hydrolase_1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00561">
        <property type="entry name" value="Abhydrolase_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00111">
        <property type="entry name" value="ABHYDROLASE"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53474">
        <property type="entry name" value="SSF53474"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="AB hydrolase-1" evidence="1">
        <location>
            <begin position="13"/>
            <end position="234"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF00561"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX34636.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="254" mass="26761" checksum="005CFDE81F5A5E97" modified="2008-01-15" version="1">MSKLHVVQQGQGPAIVLSHALGCDLQMWDGVAQALEDRFTVVRYDHRGHGRSPAIGEAFDMNDLADDAAGVIEALGQGPVHFVGLSMGGMTAQALAVRHPALVRSITIANSASYYDEAARAGWQARIATVHDQGVAVIADGAMQRWFTPEFRTGQAARVASLRAGLEALAAKPYAAACAAVGGIDFRESNRRIACPALLIAGSRDEATPPALSEDMQAQIPGAQLVSLPAAHLSAVEMPVEFAQLVSDFVAQVR</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2021-06-02" version="47" xmlns="http://uniprot.org/uniprot">
    <accession>A9BTD0</accession>
    <name>A9BTD0_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_2055</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
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            <taxon>Comamonadaceae</taxon>
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    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
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                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
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            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX34695.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012203978.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_2055"/>
    <dbReference type="EnsemblBacteria" id="ABX34695">
        <property type="protein sequence ID" value="ABX34695"/>
        <property type="gene ID" value="Daci_2055"/>
    </dbReference>
    <dbReference type="GeneID" id="60686459"/>
    <dbReference type="KEGG" id="dac:Daci_2055"/>
    <dbReference type="eggNOG" id="COG3169">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_133782_0_0_4"/>
    <dbReference type="OMA" id="LAFFEYW"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007437">
        <property type="entry name" value="DUF486"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR38482">
        <property type="entry name" value="PTHR38482"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04342">
        <property type="entry name" value="DMT_6"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF021239">
        <property type="entry name" value="UCP021239"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="7"/>
            <end position="26"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="32"/>
            <end position="50"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="70"/>
            <end position="87"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="93"/>
            <end position="110"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX34695.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="115" mass="12954" checksum="6D8628694F3F2B44" modified="2008-01-15" version="1">MSPKIAPVLLLLISNVFMTFAWYGHLKFENRPLYLVILVSWLIALAEYCFAVPANRLGHEVYSAAELKTIQEVITLVVFAVFSVLYLGEKLTLNHLVGFGFICLGAFFVFKGPLR</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="80" xmlns="http://uniprot.org/uniprot">
    <accession>A9BTE3</accession>
    <name>A9BTE3_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Transcriptional regulator, MarR family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Daci_2271</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="4" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX34911.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012204194.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_2271"/>
    <dbReference type="PRIDE" id="A9BTE3"/>
    <dbReference type="EnsemblBacteria" id="ABX34911">
        <property type="protein sequence ID" value="ABX34911"/>
        <property type="gene ID" value="Daci_2271"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_2271"/>
    <dbReference type="eggNOG" id="COG1846">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_083287_4_1_4"/>
    <dbReference type="OMA" id="QWQLALP"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003700">
        <property type="term" value="F:DNA-binding transcription factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000835">
        <property type="entry name" value="HTH_MarR-typ"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036390">
        <property type="entry name" value="WH_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12802">
        <property type="entry name" value="MarR_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00598">
        <property type="entry name" value="HTHMARR"/>
    </dbReference>
    <dbReference type="SMART" id="SM00347">
        <property type="entry name" value="HTH_MARR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46785">
        <property type="entry name" value="SSF46785"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50995">
        <property type="entry name" value="HTH_MARR_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HTH marR-type" evidence="2">
        <location>
            <begin position="7"/>
            <end position="143"/>
        </location>
    </feature>
    <feature type="coiled-coil region" evidence="1">
        <location>
            <begin position="101"/>
            <end position="128"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS50995"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ABX34911.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="146" mass="16395" checksum="00AC75D428DEF70B" modified="2008-01-15" version="1">MKSALQQNFLMQQLGHCTRLAHATVRPHYAKHMLALDLKPSEFAVLSLISANPGASQRQIAETVMISQPNMAALMERLQVRGLLRREADPADRRLSLLYLTAEGERLHEEAAAQVEILEQEASRMLSAEDKQQLLRLLHKMIDCAG</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="56" xmlns="http://uniprot.org/uniprot">
    <accession>A9BTU0</accession>
    <name>A9BTU0_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">Thyroglobulin type-1 domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Daci_2716</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="4" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX35354.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_2716"/>
    <dbReference type="PRIDE" id="A9BTU0"/>
    <dbReference type="EnsemblBacteria" id="ABX35354">
        <property type="protein sequence ID" value="ABX35354"/>
        <property type="gene ID" value="Daci_2716"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_2716"/>
    <dbReference type="eggNOG" id="COG3843">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_027492_1_0_4"/>
    <dbReference type="OMA" id="MFDARSD"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR021795">
        <property type="entry name" value="DUF3363"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000716">
        <property type="entry name" value="Thyroglobulin_1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF11843">
        <property type="entry name" value="DUF3363"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51162">
        <property type="entry name" value="THYROGLOBULIN_1_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Thyroglobulin type-1" evidence="2">
        <location>
            <begin position="4"/>
            <end position="69"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="115"/>
            <end position="198"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="148"/>
            <end position="175"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS51162"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ABX35354.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="793" mass="86415" checksum="102B9F739F1DB7DF" modified="2008-01-15" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="75" xmlns="http://uniprot.org/uniprot">
    <accession>A9BTY5</accession>
    <name>A9BTY5_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="10">Acyl-CoA dehydrogenase domain protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="10" type="ordered locus">Daci_2761</name>
    </gene>
    <organism evidence="10 11">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="10 11" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="11">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="11" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="11">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>FAD</name>
            <dbReference type="ChEBI" id="CHEBI:57692"/>
        </cofactor>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the acyl-CoA dehydrogenase family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX35399.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012204609.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_2761"/>
    <dbReference type="PRIDE" id="A9BTY5"/>
    <dbReference type="EnsemblBacteria" id="ABX35399">
        <property type="protein sequence ID" value="ABX35399"/>
        <property type="gene ID" value="Daci_2761"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_2761"/>
    <dbReference type="eggNOG" id="COG1960">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_018204_12_2_4"/>
    <dbReference type="OMA" id="PTMCLTE"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0050660">
        <property type="term" value="F:flavin adenine dinucleotide binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016627">
        <property type="term" value="F:oxidoreductase activity, acting on the CH-CH group of donors"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.540.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.110.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025878">
        <property type="entry name" value="Acyl-CoA_dh-like_C_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020953">
        <property type="entry name" value="Acyl-CoA_DH_N_bac"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006091">
        <property type="entry name" value="Acyl-CoA_Oxase/DH_mid-dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR046373">
        <property type="entry name" value="Acyl-CoA_Oxase/DH_mid-dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036250">
        <property type="entry name" value="AcylCo_DH-like_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009075">
        <property type="entry name" value="AcylCo_DH/oxidase_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013786">
        <property type="entry name" value="AcylCoA_DH/ox_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037069">
        <property type="entry name" value="AcylCoA_DH/ox_N_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009100">
        <property type="entry name" value="AcylCoA_DH/oxidase_NM_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00441">
        <property type="entry name" value="Acyl-CoA_dh_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12806">
        <property type="entry name" value="Acyl-CoA_dh_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02770">
        <property type="entry name" value="Acyl-CoA_dh_M"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02771">
        <property type="entry name" value="Acyl-CoA_dh_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12418">
        <property type="entry name" value="AcylCoA_DH_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47203">
        <property type="entry name" value="SSF47203"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56645">
        <property type="entry name" value="SSF56645"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-0274">FAD</keyword>
    <keyword evidence="3" id="KW-0285">Flavoprotein</keyword>
    <keyword evidence="11" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="AcylCoA_DH_N" evidence="8">
        <location>
            <begin position="10"/>
            <end position="42"/>
        </location>
    </feature>
    <feature type="domain" description="Acyl-CoA_dh_N" evidence="7">
        <location>
            <begin position="44"/>
            <end position="164"/>
        </location>
    </feature>
    <feature type="domain" description="Acyl-CoA_dh_M" evidence="6">
        <location>
            <begin position="170"/>
            <end position="278"/>
        </location>
    </feature>
    <feature type="domain" description="Acyl-CoA_dh_1" evidence="5">
        <location>
            <begin position="289"/>
            <end position="460"/>
        </location>
    </feature>
    <feature type="domain" description="Acyl-CoA_dh_C" evidence="9">
        <location>
            <begin position="482"/>
            <end position="589"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001974"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00009347"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022630"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022827"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="Pfam" id="PF00441"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="Pfam" id="PF02770"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="Pfam" id="PF02771"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="Pfam" id="PF12418"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="9">
        <source>
            <dbReference type="Pfam" id="PF12806"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="EMBL" id="ABX35399.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="596" mass="63869" checksum="2BFBCF2636FB7E0C" modified="2008-01-15" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2021-06-02" version="42" xmlns="http://uniprot.org/uniprot">
    <accession>A9BTZ9</accession>
    <name>A9BTZ9_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_3076</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX35714.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012204920.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_3076"/>
    <dbReference type="EnsemblBacteria" id="ABX35714">
        <property type="protein sequence ID" value="ABX35714"/>
        <property type="gene ID" value="Daci_3076"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_3076"/>
    <dbReference type="eggNOG" id="ENOG503314I">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_144870_3_0_4"/>
    <dbReference type="OMA" id="WLALAMD"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR021762">
        <property type="entry name" value="DUF3325"/>
    </dbReference>
    <dbReference type="Pfam" id="PF11804">
        <property type="entry name" value="DUF3325"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="52"/>
            <end position="69"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="76"/>
            <end position="95"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX35714.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="105" mass="11198" checksum="CF0018C4D1A1B08E" modified="2008-01-15" version="1">MSEGLMDALLLAAAFAASLAGMGWFALAKDVHWEQVHGNTPQPDGKVRLLRWLGASGLAASLGLCLAVDHASMASLVWIMTLAAAALAIAFTLTWRPSWLRWLPA</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="77" xmlns="http://uniprot.org/uniprot">
    <accession>A9BUA0</accession>
    <name>A9BUA0_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="8">ABC transporter related</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="8" type="ordered locus">Daci_1158</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="9" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX33803.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012203089.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_1158"/>
    <dbReference type="PRIDE" id="A9BUA0"/>
    <dbReference type="EnsemblBacteria" id="ABX33803">
        <property type="protein sequence ID" value="ABX33803"/>
        <property type="gene ID" value="Daci_1158"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_1158"/>
    <dbReference type="eggNOG" id="COG0411">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_000604_1_2_4"/>
    <dbReference type="OMA" id="QHIRKTP"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003593">
        <property type="entry name" value="AAA+_ATPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003439">
        <property type="entry name" value="ABC_transporter-like_ATP-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR032823">
        <property type="entry name" value="BCA_ABC_TP_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00005">
        <property type="entry name" value="ABC_tran"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12399">
        <property type="entry name" value="BCA_ABC_TP_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00382">
        <property type="entry name" value="AAA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50893">
        <property type="entry name" value="ABC_TRANSPORTER_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3 6" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="1" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="5" id="KW-0472">Membrane</keyword>
    <keyword evidence="2 6" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4" id="KW-1278">Translocase</keyword>
    <feature type="domain" description="ABC transporter" evidence="7">
        <location>
            <begin position="11"/>
            <end position="259"/>
        </location>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <begin position="43"/>
            <end position="50"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022967"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00434"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="PROSITE" id="PS50893"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="ABX33803.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="261" mass="29143" checksum="3B2696AA2C710BAE" modified="2008-01-15" version="1">MTHKKIGDVILDIKNISLRFGGVKALTDISFDVREHEIRSIIGPNGAGKSSMLNCINGVYTPSEGSITFRGKTFSHMNSRQVAEMGVARTFQNLALFKGMSVIDNIMTGRNLQIKSGILMQALRLGPAQREEIRHREFVEHIIDFLEIQAYRKTPVGQLPYGLQKRVDLGRALAMQPQVLLLDEPMAGMNVEEKQDMCRFILDVNDEFGSTIVLIEHDMGVVMDISDRVVVLDYGKKIGDGAPDEVRQNEDVIRAYLGTGH</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="81" xmlns="http://uniprot.org/uniprot">
    <accession>A9BUE7</accession>
    <name>A9BUE7_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">Histidine kinase</fullName>
            <ecNumber evidence="2">2.7.13.3</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="6" type="ordered locus">Daci_1205</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="7" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>ATP + protein L-histidine = ADP + protein N-phospho-L-histidine.</text>
            <dbReference type="EC" id="2.7.13.3"/>
        </reaction>
    </comment>
    <dbReference type="EC" id="2.7.13.3" evidence="2"/>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX33850.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_1205"/>
    <dbReference type="PRIDE" id="A9BUE7"/>
    <dbReference type="EnsemblBacteria" id="ABX33850">
        <property type="protein sequence ID" value="ABX33850"/>
        <property type="gene ID" value="Daci_1205"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_1205"/>
    <dbReference type="eggNOG" id="COG4191">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_021900_0_0_4"/>
    <dbReference type="OMA" id="RAKFADQ"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000155">
        <property type="term" value="F:phosphorelay sensor kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd00082">
        <property type="entry name" value="HisKA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.565.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003594">
        <property type="entry name" value="HATPase_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036890">
        <property type="entry name" value="HATPase_C_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005467">
        <property type="entry name" value="His_kinase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003661">
        <property type="entry name" value="HisK_dim/P"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036097">
        <property type="entry name" value="HisK_dim/P_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004358">
        <property type="entry name" value="Sig_transdc_His_kin-like_C"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02518">
        <property type="entry name" value="HATPase_c"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00512">
        <property type="entry name" value="HisKA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00344">
        <property type="entry name" value="BCTRLSENSOR"/>
    </dbReference>
    <dbReference type="SMART" id="SM00387">
        <property type="entry name" value="HATPase_c"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00388">
        <property type="entry name" value="HisKA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47384">
        <property type="entry name" value="SSF47384"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55874">
        <property type="entry name" value="SSF55874"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50109">
        <property type="entry name" value="HIS_KIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="6" id="KW-0418">Kinase</keyword>
    <keyword evidence="4" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-0597">Phosphoprotein</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="6" id="KW-0808">Transferase</keyword>
    <keyword evidence="4" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="4" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="4">
        <location>
            <begin position="32"/>
            <end position="51"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="4">
        <location>
            <begin position="247"/>
            <end position="271"/>
        </location>
    </feature>
    <feature type="domain" description="Histidine kinase" evidence="5">
        <location>
            <begin position="301"/>
            <end position="522"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00000085"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00012438"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022553"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="PROSITE" id="PS50109"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="ABX33850.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="548" mass="58949" checksum="0EC9D80CF6560A11" modified="2008-01-15" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="61" xmlns="http://uniprot.org/uniprot">
    <accession>A9BUG6</accession>
    <name>A9BUG6_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="5">PhoH family protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ordered locus">Daci_1225</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="6" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the PhoH family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX33869.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012203155.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_1225"/>
    <dbReference type="PRIDE" id="A9BUG6"/>
    <dbReference type="EnsemblBacteria" id="ABX33869">
        <property type="protein sequence ID" value="ABX33869"/>
        <property type="gene ID" value="Daci_1225"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_1225"/>
    <dbReference type="eggNOG" id="COG1702">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_051654_0_0_4"/>
    <dbReference type="OMA" id="PAQMKMV"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003714">
        <property type="entry name" value="PhoH"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02562">
        <property type="entry name" value="PhoH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="2" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="PhoH" evidence="4">
        <location>
            <begin position="103"/>
            <end position="306"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00010393"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="Pfam" id="PF02562"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="ABX33869.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="323" mass="35595" checksum="F2E324A3AA88BAB8" modified="2008-01-15" version="1">MILRHTFTPHDNNRLSHVCGPADAHLRTIEIAMGVKIAHRHEQFKIDGPKAKANDALELLQALYEMADDPILDDSLQLMLAGDTELIEQPQDAIQLSTRRPDLRARTANQSAYLENIARHDITFGIGPAGTGKTYLAVACAVDALERSAVQRIVLTRPAVEAGERLGFLPGDLTQKVDPYLRPLYDALYDLMGYEKVQKAFERNVLEIAPLAFMRGRTLNNAFVILDEAQNTTPEQMKMFLTRIGFGARAVVTGDVSQIDLPKGALSGLIDAERVLKRVKGIAINHFTSADVVRHPLVARIVDAYDARGQAPARRAAPRLAAH</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="84" xmlns="http://uniprot.org/uniprot">
    <accession>A9BUN7</accession>
    <name>A9BUN7_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="4 12">Ribonucleoside-diphosphate reductase</fullName>
            <ecNumber evidence="4 12">1.17.4.1</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="15" type="ordered locus">Daci_1501</name>
    </gene>
    <organism evidence="15 16">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="15 16" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="16">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="16" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="16">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="12">Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1 12">
            <text>[thioredoxin]-disulfide + a 2'-deoxyribonucleoside 5'-diphosphate + H2O = [thioredoxin]-dithiol + a ribonucleoside 5'-diphosphate</text>
            <dbReference type="Rhea" id="RHEA:23252"/>
            <dbReference type="Rhea" id="RHEA-COMP:10698"/>
            <dbReference type="Rhea" id="RHEA-COMP:10700"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:29950"/>
            <dbReference type="ChEBI" id="CHEBI:50058"/>
            <dbReference type="ChEBI" id="CHEBI:57930"/>
            <dbReference type="ChEBI" id="CHEBI:73316"/>
            <dbReference type="EC" id="1.17.4.1"/>
        </reaction>
    </comment>
    <comment type="pathway">
        <text evidence="2 12">Genetic information processing; DNA replication.</text>
    </comment>
    <comment type="similarity">
        <text evidence="3 12">Belongs to the ribonucleoside diphosphate reductase large chain family.</text>
    </comment>
    <dbReference type="EC" id="1.17.4.1" evidence="4 12"/>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX34145.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012203431.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_1501"/>
    <dbReference type="PRIDE" id="A9BUN7"/>
    <dbReference type="EnsemblBacteria" id="ABX34145">
        <property type="protein sequence ID" value="ABX34145"/>
        <property type="gene ID" value="Daci_1501"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_1501"/>
    <dbReference type="eggNOG" id="COG0209">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_000404_3_0_4"/>
    <dbReference type="OMA" id="RGSIQNI"/>
    <dbReference type="UniPathway" id="UPA00326"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004748">
        <property type="term" value="F:ribonucleoside-diphosphate reductase activity, thioredoxin disulfide as acceptor"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006260">
        <property type="term" value="P:DNA replication"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniPathway"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005144">
        <property type="entry name" value="ATP-cone_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013346">
        <property type="entry name" value="NrdE_NrdA"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000788">
        <property type="entry name" value="RNR_lg_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013509">
        <property type="entry name" value="RNR_lsu_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008926">
        <property type="entry name" value="RNR_R1-su_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR039718">
        <property type="entry name" value="Rrm1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11573">
        <property type="entry name" value="PTHR11573"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03477">
        <property type="entry name" value="ATP-cone"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02867">
        <property type="entry name" value="Ribonuc_red_lgC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00317">
        <property type="entry name" value="Ribonuc_red_lgN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR01183">
        <property type="entry name" value="RIBORDTASEM1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48168">
        <property type="entry name" value="SSF48168"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR02506">
        <property type="entry name" value="NrdE_NrdA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51161">
        <property type="entry name" value="ATP_CONE"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00089">
        <property type="entry name" value="RIBORED_LARGE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-0021">Allosteric enzyme</keyword>
    <keyword evidence="8 11" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="10" id="KW-1015">Disulfide bond</keyword>
    <keyword evidence="6 12" id="KW-0235">DNA replication</keyword>
    <keyword evidence="7 11" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="9 12 15" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="16" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="ATP-cone" evidence="14">
        <location>
            <begin position="31"/>
            <end position="131"/>
        </location>
    </feature>
    <feature type="domain" description="ATP-cone" evidence="14">
        <location>
            <begin position="152"/>
            <end position="241"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="13">
        <location>
            <begin position="1"/>
            <end position="22"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00000206"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00005160"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00010406"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00012274"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022533"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022705"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00023002"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00023157"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00492"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="12">
        <source>
            <dbReference type="RuleBase" id="RU003410"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="13">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="14">
        <source>
            <dbReference type="PROSITE" id="PS51161"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="15">
        <source>
            <dbReference type="EMBL" id="ABX34145.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="16">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="973" mass="107634" checksum="062550A76F3DAB3D" modified="2008-01-15" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="54" xmlns="http://uniprot.org/uniprot">
    <accession>A9BUS1</accession>
    <name>A9BUS1_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Daci_1535</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="2" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
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        <property type="protein sequence ID" value="ABX34179.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_1535"/>
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        <property type="protein sequence ID" value="ABX34179"/>
        <property type="gene ID" value="Daci_1535"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_1535"/>
    <dbReference type="eggNOG" id="COG4737">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
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    <dbReference type="OMA" id="RWAKSEN"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009387">
        <property type="entry name" value="HigB-2"/>
    </dbReference>
    <dbReference type="Pfam" id="PF06296">
        <property type="entry name" value="RelE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF018634">
        <property type="entry name" value="UCP018634"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ABX34179.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="144" mass="16065" checksum="1D9A28CFEB90A209" modified="2008-01-15" version="1">MYHTGCDINPCGGYGMRIFKNAWFARYARKQDISDKSMVQAIERAEQGLIDADLGGGVIKQRVARPGQGKSGGFRTVVLYRTAERAFFVYGFAKSDRDNIDKDDEAQFRKAAGHVLGLSEEQLTVLIGNGHFSEVHDHDKEIPK</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="83" xmlns="http://uniprot.org/uniprot">
    <accession>A9BVG7</accession>
    <name>A9BVG7_DELAS</name>
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        <submittedName>
            <fullName evidence="12">ABC transporter, CydDC cysteine exporter (CydDC-E) family, permease/ATP-binding protein CydC</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="12" type="ordered locus">Daci_2396</name>
    </gene>
    <organism evidence="12 13">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="12 13" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="13">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="13" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="13">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX35034.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012204316.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_2396"/>
    <dbReference type="PRIDE" id="A9BVG7"/>
    <dbReference type="EnsemblBacteria" id="ABX35034">
        <property type="protein sequence ID" value="ABX35034"/>
        <property type="gene ID" value="Daci_2396"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_2396"/>
    <dbReference type="eggNOG" id="COG4987">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_000604_84_9_4"/>
    <dbReference type="OMA" id="VSHNATF"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0140359">
        <property type="term" value="F:ABC-type transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.1560.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003593">
        <property type="entry name" value="AAA+_ATPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011527">
        <property type="entry name" value="ABC1_TM_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036640">
        <property type="entry name" value="ABC1_TM_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003439">
        <property type="entry name" value="ABC_transporter-like_ATP-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017871">
        <property type="entry name" value="ABC_transporter-like_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00005">
        <property type="entry name" value="ABC_tran"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00382">
        <property type="entry name" value="AAA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF90123">
        <property type="entry name" value="SSF90123"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50929">
        <property type="entry name" value="ABC_TM1F"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00211">
        <property type="entry name" value="ABC_TRANSPORTER_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50893">
        <property type="entry name" value="ABC_TRANSPORTER_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4 8 12" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="1" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="7 9" id="KW-0472">Membrane</keyword>
    <keyword evidence="3 8" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="13" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="5" id="KW-1278">Translocase</keyword>
    <keyword evidence="2 9" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="6 9" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="9">
        <location>
            <begin position="21"/>
            <end position="40"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="9">
        <location>
            <begin position="46"/>
            <end position="67"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="9">
        <location>
            <begin position="140"/>
            <end position="161"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="9">
        <location>
            <begin position="167"/>
            <end position="189"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="9">
        <location>
            <begin position="256"/>
            <end position="276"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="9">
        <location>
            <begin position="282"/>
            <end position="304"/>
        </location>
    </feature>
    <feature type="domain" description="ABC transmembrane type-1" evidence="11">
        <location>
            <begin position="24"/>
            <end position="304"/>
        </location>
    </feature>
    <feature type="domain" description="ABC transporter" evidence="10">
        <location>
            <begin position="342"/>
            <end position="561"/>
        </location>
    </feature>
    <feature type="binding site" evidence="8">
        <location>
            <begin position="374"/>
            <end position="381"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022967"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00434"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="10">
        <source>
            <dbReference type="PROSITE" id="PS50893"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="11">
        <source>
            <dbReference type="PROSITE" id="PS50929"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="EMBL" id="ABX35034.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="13">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="561" mass="59025" checksum="3E537DD829849268" modified="2008-01-15" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="76" xmlns="http://uniprot.org/uniprot">
    <accession>A9BVR3</accession>
    <name>A9BVR3_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_2788</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
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                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX35426.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012204636.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
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    <dbReference type="STRING" id="398578.Daci_2788"/>
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    <dbReference type="EnsemblBacteria" id="ABX35426">
        <property type="protein sequence ID" value="ABX35426"/>
        <property type="gene ID" value="Daci_2788"/>
    </dbReference>
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    <dbReference type="Gene3D" id="3.30.160.880">
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    </dbReference>
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        <property type="entry name" value="Cell_div_ZapA-like"/>
    </dbReference>
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        <property type="entry name" value="Cell_div_ZapA-like_sf"/>
    </dbReference>
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        <property type="entry name" value="Cell_div_ZapA_N"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR34981">
        <property type="entry name" value="PTHR34981"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF05164">
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        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF102829">
        <property type="entry name" value="SSF102829"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
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        <location>
            <begin position="70"/>
            <end position="110"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="74"/>
            <end position="96"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX35426.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="133" mass="14981" checksum="483B500663667F72" modified="2008-01-15" version="1">MKQIEVQILQQSYVLTCPDGQEERLLEAVRRVDTAMTRIRDSGKVRSRERVAVLSALNMAFDVLDREAQESAMATAQAEMQSLHDEVTSQHAAQSLPPEPSPEELAERQRQQALAEQLVLRLDQALESDARLL</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2021-06-02" version="33" xmlns="http://uniprot.org/uniprot">
    <accession>A9BW28</accession>
    <name>A9BW28_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Daci_3206</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="2" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX35844.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_3206"/>
    <dbReference type="EnsemblBacteria" id="ABX35844">
        <property type="protein sequence ID" value="ABX35844"/>
        <property type="gene ID" value="Daci_3206"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_3206"/>
    <dbReference type="HOGENOM" id="CLU_2860306_0_0_4"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ABX35844.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="64" mass="7213" checksum="B9E56EC8026763F8" modified="2008-01-15" version="1">MSSDMPTYAELQAEIAQLRGEMLWYLPLINKAEQYHHTWAFLTEGTGIATANGYRAALGQKEKP</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="38" xmlns="http://uniprot.org/uniprot">
    <accession>A9BW32</accession>
    <name>A9BW32_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Daci_3210</name>
        <name evidence="2" type="ordered locus">Daci_4120</name>
    </gene>
    <organism evidence="1 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
            <strain evidence="1">SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="1" key="3">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX35848.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX36751.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012205048.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_3210"/>
    <dbReference type="PRIDE" id="A9BW32"/>
    <dbReference type="EnsemblBacteria" id="ABX35848">
        <property type="protein sequence ID" value="ABX35848"/>
        <property type="gene ID" value="Daci_3210"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="ABX36751">
        <property type="protein sequence ID" value="ABX36751"/>
        <property type="gene ID" value="Daci_4120"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_3210"/>
    <dbReference type="KEGG" id="dac:Daci_4120"/>
    <dbReference type="HOGENOM" id="CLU_170939_0_0_4"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ABX35848.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX36751.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="97" mass="11024" checksum="93102802145E6F53" modified="2008-01-15" version="1">MNACIPCLASRDADALAHQQGEYDAEDSFLDAYVQIHYGPDYAPEFVIEAMKEIPFDLAKVIAELKDYKAQGEAIENWLSKYAYQCARRDMQEARNA</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="81" xmlns="http://uniprot.org/uniprot">
    <accession>A9BWA6</accession>
    <name>A9BWA6_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Formate dehydrogenase, alpha subunit</fullName>
            <ecNumber evidence="5">1.2.1.2</ecNumber>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ordered locus">Daci_3490</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="6" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.</text>
    </comment>
    <dbReference type="EC" id="1.2.1.2" evidence="5"/>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX36126.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_3490"/>
    <dbReference type="PRIDE" id="A9BWA6"/>
    <dbReference type="EnsemblBacteria" id="ABX36126">
        <property type="protein sequence ID" value="ABX36126"/>
        <property type="gene ID" value="Daci_3490"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_3490"/>
    <dbReference type="eggNOG" id="COG0243">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="eggNOG" id="COG3383">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_000422_1_2_4"/>
    <dbReference type="OMA" id="KWDGAKW"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009055">
        <property type="term" value="F:electron transfer activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0047111">
        <property type="term" value="F:formate dehydrogenase (cytochrome-c-553) activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008863">
        <property type="term" value="F:formate dehydrogenase (NAD+) activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043546">
        <property type="term" value="F:molybdopterin cofactor binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0045333">
        <property type="term" value="P:cellular respiration"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009010">
        <property type="entry name" value="Asp_de-COase-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006443">
        <property type="entry name" value="Formate-DH-alph_fdnG"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006657">
        <property type="entry name" value="MoPterin_dinucl-bd_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006656">
        <property type="entry name" value="Mopterin_OxRdtase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006655">
        <property type="entry name" value="Mopterin_OxRdtase_prok_CS"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00384">
        <property type="entry name" value="Molybdopterin"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01568">
        <property type="entry name" value="Molydop_binding"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50692">
        <property type="entry name" value="SSF50692"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01553">
        <property type="entry name" value="formate-DH-alph"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00932">
        <property type="entry name" value="MOLYBDOPTERIN_PROK_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="5" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Molybdopterin" evidence="3">
        <location>
            <begin position="2"/>
            <end position="378"/>
        </location>
    </feature>
    <feature type="domain" description="Molydop_binding" evidence="4">
        <location>
            <begin position="686"/>
            <end position="801"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00010312"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF00384"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="Pfam" id="PF01568"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="ABX36126.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="808" mass="90316" checksum="F47CE67487164021" modified="2008-01-15" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="65" xmlns="http://uniprot.org/uniprot">
    <accession>A9BWB4</accession>
    <name>A9BWB4_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Protein serine/threonine phosphatase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_3498</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX36134.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012205334.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_3498"/>
    <dbReference type="PRIDE" id="A9BWB4"/>
    <dbReference type="EnsemblBacteria" id="ABX36134">
        <property type="protein sequence ID" value="ABX36134"/>
        <property type="gene ID" value="Daci_3498"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_3498"/>
    <dbReference type="eggNOG" id="COG0631">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_034545_5_0_4"/>
    <dbReference type="OMA" id="SDGLWHY"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004722">
        <property type="term" value="F:protein serine/threonine phosphatase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.60.40.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036457">
        <property type="entry name" value="PPM-type_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001932">
        <property type="entry name" value="PPM-type_phosphatase_dom"/>
    </dbReference>
    <dbReference type="SMART" id="SM00331">
        <property type="entry name" value="PP2C_SIG"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00332">
        <property type="entry name" value="PP2Cc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF81606">
        <property type="entry name" value="SSF81606"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51746">
        <property type="entry name" value="PPM_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="PPM-type phosphatase" evidence="1">
        <location>
            <begin position="6"/>
            <end position="248"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS51746"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX36134.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="256" mass="28287" checksum="97F79C74691F15DE" modified="2008-01-15" version="1">MQPAYRLQAATGIHRGDRQYQQDQVMLMAHPYVHGCLLGVLADGMGGRSGGRKASDQVMLTARQLFERFEPGKEDCTALLESIVHESHMVIRLTAISAEQEPHSTIAAFVLLPQGRCHWVHSGDSRIYHYQGATMVHRTKDHSYVQSLVDRGELTEFEAHVHPKSNILLGCLGTEAEPPMSHHVIEHVHPGTTLMACSDGVWHYYTAEELGTVLNALTPREATEFLIDKARVRAQGGGDNLSLVVLKLEALEPVTA</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="70" xmlns="http://uniprot.org/uniprot">
    <accession>A9BWB8</accession>
    <name>A9BWB8_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">ATP-dependent Clp protease adapter protein ClpS</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="1" type="primary">clpS</name>
        <name evidence="3" type="ordered locus">Daci_3502</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="4" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="1">Involved in the modulation of the specificity of the ClpAP-mediated ATP-dependent protein degradation.</text>
    </comment>
    <comment type="subunit">
        <text evidence="1">Binds to the N-terminal domain of the chaperone ClpA.</text>
    </comment>
    <comment type="similarity">
        <text evidence="1">Belongs to the ClpS family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX36138.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012205338.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_3502"/>
    <dbReference type="PRIDE" id="A9BWB8"/>
    <dbReference type="EnsemblBacteria" id="ABX36138">
        <property type="protein sequence ID" value="ABX36138"/>
        <property type="gene ID" value="Daci_3502"/>
    </dbReference>
    <dbReference type="GeneID" id="60687728"/>
    <dbReference type="KEGG" id="dac:Daci_3502"/>
    <dbReference type="eggNOG" id="COG2127">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_134358_2_1_4"/>
    <dbReference type="OMA" id="NDDYTSM"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008233">
        <property type="term" value="F:peptidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030163">
        <property type="term" value="P:protein catabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006508">
        <property type="term" value="P:proteolysis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.1390.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00302">
        <property type="entry name" value="ClpS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR022935">
        <property type="entry name" value="ClpS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003769">
        <property type="entry name" value="ClpS_core"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014719">
        <property type="entry name" value="Ribosomal_L7/12_C/ClpS-like"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33473">
        <property type="entry name" value="PTHR33473"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02617">
        <property type="entry name" value="ClpS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54736">
        <property type="entry name" value="SSF54736"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="3" id="KW-0645">Protease</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="ClpS" evidence="2">
        <location>
            <begin position="42"/>
            <end position="119"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00302"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF02617"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ABX36138.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="125" mass="14018" checksum="73955AFA1597A3EA" modified="2008-01-15" version="1">MARMIFMATQPPSIPPAIPTVRPVSDDDGAVVLERRRQRVQPPQMYQVVMLNDDFTPMEFVIIVLQELFGKDRETATQIMLKIHLDGRGVCGVYSRDVAATKVEQVLQAAQKAGHPLQAMFEPVE</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="58" xmlns="http://uniprot.org/uniprot">
    <accession>A9BWC3</accession>
    <name>A9BWC3_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Glyoxalase/bleomycin resistance protein/dioxygenase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_3507</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX36143.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012205343.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="PRIDE" id="A9BWC3"/>
    <dbReference type="EnsemblBacteria" id="ABX36143">
        <property type="protein sequence ID" value="ABX36143"/>
        <property type="gene ID" value="Daci_3507"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_3507"/>
    <dbReference type="eggNOG" id="COG0346">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_046006_10_1_4"/>
    <dbReference type="OMA" id="GFFLHTD"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051213">
        <property type="term" value="F:dioxygenase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.10.180.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029068">
        <property type="entry name" value="Glyas_Bleomycin-R_OHBP_Dase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004360">
        <property type="entry name" value="Glyas_Fos-R_dOase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037523">
        <property type="entry name" value="VOC"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00903">
        <property type="entry name" value="Glyoxalase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54593">
        <property type="entry name" value="SSF54593"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51819">
        <property type="entry name" value="VOC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0223">Dioxygenase</keyword>
    <keyword evidence="2" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="VOC" evidence="1">
        <location>
            <begin position="4"/>
            <end position="127"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS51819"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX36143.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="131" mass="14566" checksum="44F491932AA38E86" modified="2008-01-15" version="1">MPQVIGQVSVAVRDYDEALRFYVGALGFVLIEDTALSEGKRWVTVASGGGGVRLLLARATNEEQAARVGNQTGGRVFLFLQTDDCLRDFEAYRSRGVRFVQDPQRKPHGTVAVFEDLYGNLWDLIEPHPAR</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="41" xmlns="http://uniprot.org/uniprot">
    <accession>A9BWG1</accession>
    <name>A9BWG1_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Daci_3547</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="2" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX36181.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_3547"/>
    <dbReference type="PRIDE" id="A9BWG1"/>
    <dbReference type="EnsemblBacteria" id="ABX36181">
        <property type="protein sequence ID" value="ABX36181"/>
        <property type="gene ID" value="Daci_3547"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_3547"/>
    <dbReference type="HOGENOM" id="CLU_1812620_0_0_4"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ABX36181.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="142" mass="14715" checksum="8B31C46559E4E14C" modified="2008-01-15" version="1">MLAGLFHSRPAAATAIADTTVNHTLDKIAIAWGTAPQIGQQDSVPKGMGALADFTPKAAQSATATAMAGAKEQVGQVQATLRRLGKRLAPVLGPAAGQTDGDCAQGNQKANSAPLVSQIDALTHVLRLVRTELQDLERRLAL</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="66" xmlns="http://uniprot.org/uniprot">
    <accession>A9BWL8</accession>
    <name>A9BWL8_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Aminotransferase</fullName>
            <ecNumber evidence="1">2.6.1.-</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Daci_3914</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="4" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>pyridoxal 5'-phosphate</name>
            <dbReference type="ChEBI" id="CHEBI:597326"/>
        </cofactor>
    </comment>
    <comment type="similarity">
        <text evidence="1">Belongs to the class-I pyridoxal-phosphate-dependent aminotransferase family.</text>
    </comment>
    <dbReference type="EC" id="2.6.1.-" evidence="1"/>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX36545.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012205739.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_3914"/>
    <dbReference type="PRIDE" id="A9BWL8"/>
    <dbReference type="EnsemblBacteria" id="ABX36545">
        <property type="protein sequence ID" value="ABX36545"/>
        <property type="gene ID" value="Daci_3914"/>
    </dbReference>
    <dbReference type="GeneID" id="60688197"/>
    <dbReference type="KEGG" id="dac:Daci_3914"/>
    <dbReference type="eggNOG" id="COG0436">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_038911_0_0_4"/>
    <dbReference type="OMA" id="IFTPYIE"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030170">
        <property type="term" value="F:pyridoxal phosphate binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008483">
        <property type="term" value="F:transaminase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:1901605">
        <property type="term" value="P:alpha-amino acid metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009058">
        <property type="term" value="P:biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.640.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.1150.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004839">
        <property type="entry name" value="Aminotransferase_I/II"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR022518">
        <property type="entry name" value="Aspartate_4-decarboxylase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004838">
        <property type="entry name" value="NHTrfase_class1_PyrdxlP-BS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015424">
        <property type="entry name" value="PyrdxlP-dep_Trfase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015421">
        <property type="entry name" value="PyrdxlP-dep_Trfase_major"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015422">
        <property type="entry name" value="PyrdxlP-dep_Trfase_small"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00155">
        <property type="entry name" value="Aminotran_1_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53383">
        <property type="entry name" value="SSF53383"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR03801">
        <property type="entry name" value="asp_4_decarbox"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00105">
        <property type="entry name" value="AA_TRANSFER_CLASS_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="1 3" id="KW-0032">Aminotransferase</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1 3" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Aminotran_1_2" evidence="2">
        <location>
            <begin position="189"/>
            <end position="507"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="RuleBase" id="RU000481"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF00155"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ABX36545.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="531" mass="59188" checksum="16040E6C1842E109" modified="2008-01-15" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="74" xmlns="http://uniprot.org/uniprot">
    <accession>A9BX31</accession>
    <name>A9BX31_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Transcriptional regulator, TetR family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Daci_4385</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="4" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX37016.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012206188.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_4385"/>
    <dbReference type="PRIDE" id="A9BX31"/>
    <dbReference type="EnsemblBacteria" id="ABX37016">
        <property type="protein sequence ID" value="ABX37016"/>
        <property type="gene ID" value="Daci_4385"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_4385"/>
    <dbReference type="eggNOG" id="COG1309">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_069356_28_2_4"/>
    <dbReference type="OMA" id="HIELMTA"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009057">
        <property type="entry name" value="Homeobox-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001647">
        <property type="entry name" value="HTH_TetR"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036271">
        <property type="entry name" value="Tet_transcr_reg_TetR-rel_C_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00440">
        <property type="entry name" value="TetR_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00455">
        <property type="entry name" value="HTHTETR"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46689">
        <property type="entry name" value="SSF46689"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48498">
        <property type="entry name" value="SSF48498"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50977">
        <property type="entry name" value="HTH_TETR_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HTH tetR-type" evidence="2">
        <location>
            <begin position="18"/>
            <end position="78"/>
        </location>
    </feature>
    <feature type="DNA-binding region" description="H-T-H motif" evidence="1">
        <location>
            <begin position="41"/>
            <end position="60"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00335"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS50977"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ABX37016.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="201" mass="21042" checksum="83E6AF47430B409E" modified="2008-01-15" version="1">MMTIMRNTNSSARASAKEATHERIVSVAARAIRRSGYGGTGVADIMKEAGLTHGAFYAHFASRDAMLAEAAGKACAESCAAVADVVAKAPPGMVLQAMLAAYLSKEHVQRAEVGCPLAALGSETSRQAPEVRRVATGHIKEMVDLIARQSPDWGQPAAHERALVTLSTMVGSLLLARAVDDPALSDSLREAALKHLAPASQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="87" xmlns="http://uniprot.org/uniprot">
    <accession>A9BX55</accession>
    <name>A9BX55_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="3 15">Cytochrome b</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="19" type="ordered locus">Daci_5502</name>
    </gene>
    <organism evidence="19 20">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="19 20" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="20">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="20" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="20">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="1 15">Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis.</text>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="15">
            <name>heme b</name>
            <dbReference type="ChEBI" id="CHEBI:60344"/>
        </cofactor>
        <text evidence="15">Binds 2 heme groups non-covalently.</text>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="14">
            <name>heme</name>
            <dbReference type="ChEBI" id="CHEBI:30413"/>
        </cofactor>
        <text evidence="14">Binds 2 heme groups non-covalently.</text>
    </comment>
    <comment type="subunit">
        <text evidence="15">The main subunits of complex b-c1 are: cytochrome b, cytochrome c1 and the Rieske protein.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="2">Membrane</location>
            <topology evidence="2">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="15">Belongs to the cytochrome b family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX38131.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012207300.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_5502"/>
    <dbReference type="PRIDE" id="A9BX55"/>
    <dbReference type="EnsemblBacteria" id="ABX38131">
        <property type="protein sequence ID" value="ABX38131"/>
        <property type="gene ID" value="Daci_5502"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_5502"/>
    <dbReference type="eggNOG" id="COG1290">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_031114_3_0_4"/>
    <dbReference type="OMA" id="RFFAFHF"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0045275">
        <property type="term" value="C:respiratory chain complex III"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008121">
        <property type="term" value="F:ubiquinol-cytochrome-c reductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0022904">
        <property type="term" value="P:respiratory electron transport chain"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd00284">
        <property type="entry name" value="Cytochrome_b_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.810.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005798">
        <property type="entry name" value="Cyt_b/b6_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036150">
        <property type="entry name" value="Cyt_b/b6_C_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005797">
        <property type="entry name" value="Cyt_b/b6_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027387">
        <property type="entry name" value="Cytb/b6-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR030689">
        <property type="entry name" value="Cytochrome_b"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016174">
        <property type="entry name" value="Di-haem_cyt_TM"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00032">
        <property type="entry name" value="Cytochrom_B_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00033">
        <property type="entry name" value="Cytochrome_B"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF038885">
        <property type="entry name" value="COB"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF81342">
        <property type="entry name" value="SSF81342"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF81648">
        <property type="entry name" value="SSF81648"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51003">
        <property type="entry name" value="CYTB_CTER"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51002">
        <property type="entry name" value="CYTB_NTER"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="9 15" id="KW-0249">Electron transport</keyword>
    <keyword evidence="5 14 15" id="KW-0349">Heme</keyword>
    <keyword evidence="11 14" id="KW-0408">Iron</keyword>
    <keyword evidence="12 16" id="KW-0472">Membrane</keyword>
    <keyword evidence="8 14" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="20" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="6 15" id="KW-0679">Respiratory chain</keyword>
    <keyword evidence="7 15 16" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="10 16" id="KW-1133">Transmembrane helix</keyword>
    <keyword evidence="4 15" id="KW-0813">Transport</keyword>
    <feature type="transmembrane region" description="Helical" evidence="16">
        <location>
            <begin position="48"/>
            <end position="72"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="16">
        <location>
            <begin position="106"/>
            <end position="126"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="16">
        <location>
            <begin position="132"/>
            <end position="154"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="16">
        <location>
            <begin position="166"/>
            <end position="187"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="16">
        <location>
            <begin position="199"/>
            <end position="222"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="16">
        <location>
            <begin position="263"/>
            <end position="281"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="16">
        <location>
            <begin position="325"/>
            <end position="342"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="16">
        <location>
            <begin position="349"/>
            <end position="366"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="16">
        <location>
            <begin position="372"/>
            <end position="393"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="16">
        <location>
            <begin position="405"/>
            <end position="423"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="16">
        <location>
            <begin position="435"/>
            <end position="453"/>
        </location>
    </feature>
    <feature type="domain" description="CYTB_NTER" evidence="17">
        <location>
            <begin position="18"/>
            <end position="231"/>
        </location>
    </feature>
    <feature type="domain" description="CYTB_CTER" evidence="18">
        <location>
            <begin position="244"/>
            <end position="464"/>
        </location>
    </feature>
    <feature type="binding site" description="axial binding residue" evidence="14">
        <location>
            <position position="102"/>
        </location>
        <ligand>
            <name>heme b</name>
            <dbReference type="ChEBI" id="CHEBI:60344"/>
            <label>b562</label>
        </ligand>
        <ligandPart>
            <name>Fe</name>
            <dbReference type="ChEBI" id="CHEBI:18248"/>
        </ligandPart>
    </feature>
    <feature type="binding site" description="axial binding residue" evidence="14">
        <location>
            <position position="116"/>
        </location>
        <ligand>
            <name>heme b</name>
            <dbReference type="ChEBI" id="CHEBI:60344"/>
            <label>b566</label>
        </ligand>
        <ligandPart>
            <name>Fe</name>
            <dbReference type="ChEBI" id="CHEBI:18248"/>
        </ligandPart>
    </feature>
    <feature type="binding site" description="axial binding residue" evidence="14">
        <location>
            <position position="203"/>
        </location>
        <ligand>
            <name>heme b</name>
            <dbReference type="ChEBI" id="CHEBI:60344"/>
            <label>b562</label>
        </ligand>
        <ligandPart>
            <name>Fe</name>
            <dbReference type="ChEBI" id="CHEBI:18248"/>
        </ligandPart>
    </feature>
    <feature type="binding site" description="axial binding residue" evidence="14">
        <location>
            <position position="218"/>
        </location>
        <ligand>
            <name>heme b</name>
            <dbReference type="ChEBI" id="CHEBI:60344"/>
            <label>b566</label>
        </ligand>
        <ligandPart>
            <name>Fe</name>
            <dbReference type="ChEBI" id="CHEBI:18248"/>
        </ligandPart>
    </feature>
    <feature type="binding site" evidence="13">
        <location>
            <position position="223"/>
        </location>
        <ligand>
            <name>a ubiquinone</name>
            <dbReference type="ChEBI" id="CHEBI:16389"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00002444"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00013531"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022448"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022617"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022660"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00022982"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="ARBA" id="ARBA00023004"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="12">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="13">
        <source>
            <dbReference type="PIRSR" id="PIRSR038885-1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="14">
        <source>
            <dbReference type="PIRSR" id="PIRSR038885-2"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="15">
        <source>
            <dbReference type="RuleBase" id="RU003385"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="16">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="17">
        <source>
            <dbReference type="PROSITE" id="PS51002"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="18">
        <source>
            <dbReference type="PROSITE" id="PS51003"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="19">
        <source>
            <dbReference type="EMBL" id="ABX38131.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="20">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="471" mass="53101" checksum="6A286CDD1D877E48" modified="2008-01-15" version="1">MAHEFKDIDPNAPAGAKLTNWFENRFPTAFDAYRVHMSEYYAPKNFNFWYIFGSLALLVLVIQIVTGIFLVMHYKPDAEKAFASVEYIMRDVPWGWLIRYMHSTGASAFFVVVYLHMFRGLLYGSYRKPRELVWIFGCAIFLVLMAEAFMGYLLPWGQMSYWGAQVIVNLFSAIPFIGPDLALLIRGDYVVGDATLNRFFSFHVIAVPLVLLGLVVAHLLALHDVGSNNPDGIEIKGPNAPKDAKGHPLDGIPFHPYYTVHDIFGVTVFLFLFSAVVFFAPEFGGYFLEYNNFIPADPLKTPSHIAPVWYFTPFYSMLRAITSEMMYVLIACVLLGAGFGVLKSRLPVAVKGVVAIVALGVIAMMLSIDAKFWGVLVMGGAVIILFALPWLDCSPVKSIRYRPSWHKYLYGIFVINFVILAYLGVQPPSPIGERVSQVGTLFYFGFFLLMPWWSRLGKTKPVPDRVTFKPH</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="82" xmlns="http://uniprot.org/uniprot">
    <accession>A9BX74</accession>
    <name>A9BX74_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="6">Histidinol-phosphate aminotransferase</fullName>
            <ecNumber evidence="6">2.6.1.9</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="6">Imidazole acetol-phosphate transaminase</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="6" type="primary">hisC</name>
        <name evidence="8" type="ordered locus">Daci_5521</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="9" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="1 6">
            <text>2-oxoglutarate + L-histidinol phosphate = 3-(imidazol-4-yl)-2-oxopropyl phosphate + L-glutamate</text>
            <dbReference type="Rhea" id="RHEA:23744"/>
            <dbReference type="ChEBI" id="CHEBI:16810"/>
            <dbReference type="ChEBI" id="CHEBI:29985"/>
            <dbReference type="ChEBI" id="CHEBI:57766"/>
            <dbReference type="ChEBI" id="CHEBI:57980"/>
            <dbReference type="EC" id="2.6.1.9"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="2 6">
            <name>pyridoxal 5'-phosphate</name>
            <dbReference type="ChEBI" id="CHEBI:597326"/>
        </cofactor>
    </comment>
    <comment type="pathway">
        <text evidence="3 6">Amino-acid biosynthesis; L-histidine biosynthesis; L-histidine from 5-phospho-alpha-D-ribose 1-diphosphate: step 7/9.</text>
    </comment>
    <comment type="subunit">
        <text evidence="4 6">Homodimer.</text>
    </comment>
    <comment type="similarity">
        <text evidence="6">Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family. Histidinol-phosphate aminotransferase subfamily.</text>
    </comment>
    <dbReference type="EC" id="2.6.1.9" evidence="6"/>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX38150.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012207319.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_5521"/>
    <dbReference type="PRIDE" id="A9BX74"/>
    <dbReference type="EnsemblBacteria" id="ABX38150">
        <property type="protein sequence ID" value="ABX38150"/>
        <property type="gene ID" value="Daci_5521"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_5521"/>
    <dbReference type="eggNOG" id="COG0079">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_017584_3_1_4"/>
    <dbReference type="OMA" id="IWLNANE"/>
    <dbReference type="UniPathway" id="UPA00031">
        <property type="reaction ID" value="UER00012"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004400">
        <property type="term" value="F:histidinol-phosphate transaminase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030170">
        <property type="term" value="F:pyridoxal phosphate binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000105">
        <property type="term" value="P:histidine biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.640.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.1150.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01023">
        <property type="entry name" value="HisC_aminotrans_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004839">
        <property type="entry name" value="Aminotransferase_I/II"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005861">
        <property type="entry name" value="HisP_aminotrans"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015424">
        <property type="entry name" value="PyrdxlP-dep_Trfase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015421">
        <property type="entry name" value="PyrdxlP-dep_Trfase_major"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015422">
        <property type="entry name" value="PyrdxlP-dep_Trfase_small"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00155">
        <property type="entry name" value="Aminotran_1_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53383">
        <property type="entry name" value="SSF53383"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01141">
        <property type="entry name" value="hisC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="6" id="KW-0028">Amino-acid biosynthesis</keyword>
    <keyword evidence="5 6 8" id="KW-0032">Aminotransferase</keyword>
    <keyword evidence="6" id="KW-0368">Histidine biosynthesis</keyword>
    <keyword evidence="6" id="KW-0663">Pyridoxal phosphate</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="6 8" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Aminotran_1_2" evidence="7">
        <location>
            <begin position="63"/>
            <end position="369"/>
        </location>
    </feature>
    <feature type="modified residue" description="N6-(pyridoxal phosphate)lysine" evidence="6">
        <location>
            <position position="235"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001045"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00001933"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00005011"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00011738"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022576"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01023"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="Pfam" id="PF00155"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="ABX38150.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="374" mass="40703" checksum="64FC27BFEF6D6478" modified="2008-01-15" version="1">MTASIPQVQALALERIRADVRSMHAYHVQPSQGLLKMDTMENPFRLPPQLQAALGERLGRLEINRYPGERQEVLKDMLARYAQAPAGSAVLLGNGSDEIITLLALACAQPHAEGRATMLAPMPGFVMYPMSARLQGLDFVGVNLTADFELDVPAMRAAIAEHRPAITYIAYPNNPTATLWAEADVQAVIDAVAAIGGLVVMDEAYQPFARRSWAQNMRADPARNAHVLLMRTLSKFGLAGARLGYLIGPAAIVGEIDKVRPPYNISVLNCETAIFALEHEALYAQQAVAIRAERQPLIDALATLPGVEKIWPSEANMVLLRVRDAARAQAEMKARGVLVKNVSAMHPLLVNCLRLTVGTHEENAQMLAALKESL</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="76" xmlns="http://uniprot.org/uniprot">
    <accession>A9BXH8</accession>
    <name>A9BXH8_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Transcriptional regulator, LysR family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Daci_5625</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="4" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the LysR transcriptional regulatory family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX38254.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012207423.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_5625"/>
    <dbReference type="PRIDE" id="A9BXH8"/>
    <dbReference type="EnsemblBacteria" id="ABX38254">
        <property type="protein sequence ID" value="ABX38254"/>
        <property type="gene ID" value="Daci_5625"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_5625"/>
    <dbReference type="eggNOG" id="COG0583">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_039613_16_2_4"/>
    <dbReference type="OMA" id="HNCLGFS"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003700">
        <property type="term" value="F:DNA-binding transcription factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005119">
        <property type="entry name" value="LysR_subst-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000847">
        <property type="entry name" value="Tscrpt_reg_HTH_LysR"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036390">
        <property type="entry name" value="WH_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00126">
        <property type="entry name" value="HTH_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03466">
        <property type="entry name" value="LysR_substrate"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46785">
        <property type="entry name" value="SSF46785"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50931">
        <property type="entry name" value="HTH_LYSR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HTH lysR-type" evidence="2">
        <location>
            <begin position="1"/>
            <end position="64"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00009437"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS50931"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ABX38254.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="335" mass="36078" checksum="6BFA35F24DC8140A" modified="2008-01-15" version="1">MNLLDSQHADELAALVALHEQGSFAAAGRALLRHPSVLSKRLNALETRLGVRLVERSTRHLHLTDEGLRLVDKVRQAAGLIADAQKEAAQGASQARGRLRLSLPAAMGRRWLSPLLAEFALAHPQIVLEVEYADRFVDIVGERFDAAVRIGRLADSRLVALRLGGHQRILGAAPAYLQAHGTPVHPEDLAAHRCLGFTGLQSFPQWELVHGGTSGDVPQGQARHTVLVRGPMVSNDSEALLTAAVMGVGILAGGDWLMSEHMAAGRLVRVLPQWRLDGASGIYFVRPSAAFSSAAMTALRDCLVRWFATRSPWRTGHDTLAPPPSLPPPFSASAP</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-05-25" version="81" xmlns="http://uniprot.org/uniprot">
    <accession>A9BXR4</accession>
    <name>A9BXR4_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Transcriptional regulator, LysR family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Daci_5712</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="4" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the LysR transcriptional regulatory family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX38340.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012207509.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_5712"/>
    <dbReference type="EnsemblBacteria" id="ABX38340">
        <property type="protein sequence ID" value="ABX38340"/>
        <property type="gene ID" value="Daci_5712"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_5712"/>
    <dbReference type="eggNOG" id="COG0583">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_039613_6_1_4"/>
    <dbReference type="OMA" id="IEGPCHH"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003700">
        <property type="term" value="F:DNA-binding transcription factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005119">
        <property type="entry name" value="LysR_subst-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000847">
        <property type="entry name" value="Tscrpt_reg_HTH_LysR"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036390">
        <property type="entry name" value="WH_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00126">
        <property type="entry name" value="HTH_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03466">
        <property type="entry name" value="LysR_substrate"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00039">
        <property type="entry name" value="HTHLYSR"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46785">
        <property type="entry name" value="SSF46785"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50931">
        <property type="entry name" value="HTH_LYSR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HTH lysR-type" evidence="2">
        <location>
            <begin position="4"/>
            <end position="61"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00009437"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS50931"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ABX38340.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="301" mass="31919" checksum="1EE1409292EDB031" modified="2008-01-15" version="1">MLHLTLRQLEIFCAVAQAGSTVAAADAVALSQSATSAALQQLEQAMGAQLFERVGRRLALNDAGRALLPEALALLEQARGIEQAFSVRAASLPVRLRVAASTTIGTYALPAVLAHLARSHPHLSVDLQIANTREVGQAVESLDVDLGLIEGTSHWPGLEVEPWMRDELVIVAAAQDPLVQAAGQRPLGVAALRGARWLLRESGSGTREMVEHALLPHLHQLPAAATLGSSEAIARCVAQGLGVSCLSRVLVQALVASGELAVLPTTLPRMWRDFSLVQRAGKRRSPALAAFVQACRQHAQD</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="82" xmlns="http://uniprot.org/uniprot">
    <accession>A9BXR6</accession>
    <name>A9BXR6_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Transcriptional regulator, MarR family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_5714</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX38342.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012207511.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_5714"/>
    <dbReference type="PRIDE" id="A9BXR6"/>
    <dbReference type="EnsemblBacteria" id="ABX38342">
        <property type="protein sequence ID" value="ABX38342"/>
        <property type="gene ID" value="Daci_5714"/>
    </dbReference>
    <dbReference type="GeneID" id="60690076"/>
    <dbReference type="KEGG" id="dac:Daci_5714"/>
    <dbReference type="eggNOG" id="COG1846">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_083287_18_2_4"/>
    <dbReference type="OMA" id="CPGETDR"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003700">
        <property type="term" value="F:DNA-binding transcription factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000835">
        <property type="entry name" value="HTH_MarR-typ"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023187">
        <property type="entry name" value="Tscrpt_reg_MarR-type_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036390">
        <property type="entry name" value="WH_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01047">
        <property type="entry name" value="MarR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00598">
        <property type="entry name" value="HTHMARR"/>
    </dbReference>
    <dbReference type="SMART" id="SM00347">
        <property type="entry name" value="HTH_MARR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46785">
        <property type="entry name" value="SSF46785"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01117">
        <property type="entry name" value="HTH_MARR_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50995">
        <property type="entry name" value="HTH_MARR_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HTH marR-type" evidence="1">
        <location>
            <begin position="9"/>
            <end position="142"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS50995"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX38342.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="153" mass="16932" checksum="047FD1C7FC2E6AA3" modified="2008-01-15" version="1">MSFASAPPRARLGFLMVTLVRQWRRQVEEQLLADGLTDATWAPLIHLRAWGDGVTQKELAERVGLDGSSLVRLLDILEGHGWVERRADPGDRRSKRIFLTDEGNGAVDRVRATMLQAELAMLQDLDDAEVEAMLAGMAKIQARMAALRTEGAP</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="58" xmlns="http://uniprot.org/uniprot">
    <accession>A9BY79</accession>
    <name>A9BY79_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">CheW protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_1574</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX34218.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012203503.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_1574"/>
    <dbReference type="PRIDE" id="A9BY79"/>
    <dbReference type="EnsemblBacteria" id="ABX34218">
        <property type="protein sequence ID" value="ABX34218"/>
        <property type="gene ID" value="Daci_1574"/>
    </dbReference>
    <dbReference type="GeneID" id="60686111"/>
    <dbReference type="KEGG" id="dac:Daci_1574"/>
    <dbReference type="eggNOG" id="COG0835">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_048995_6_0_4"/>
    <dbReference type="OMA" id="PLTQPWY"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006935">
        <property type="term" value="P:chemotaxis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0007165">
        <property type="term" value="P:signal transduction"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR039315">
        <property type="entry name" value="CheW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036061">
        <property type="entry name" value="CheW-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002545">
        <property type="entry name" value="CheW-lke_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR22617">
        <property type="entry name" value="PTHR22617"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01584">
        <property type="entry name" value="CheW"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00260">
        <property type="entry name" value="CheW"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50341">
        <property type="entry name" value="SSF50341"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50851">
        <property type="entry name" value="CHEW"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="CheW-like" evidence="1">
        <location>
            <begin position="28"/>
            <end position="170"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS50851"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX34218.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="175" mass="18909" checksum="A38648EDF67E2638" modified="2008-01-15" version="1">MANREALRDLQSRLAGRLQAARSEGVKVAAWLAVQAGGRNYLMPLGQSGEIFPWAGVQPVPYTKPWFLGIANLRGTLAGVIDLASLLGHGVARSEPALAESSLLAFNAALEVNASLLVDRLQGLRSADAFVRTEPAPEQSPAFFGPVHIDEAGHRWQELQLQRLSQTSEFLSIRA</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="62" xmlns="http://uniprot.org/uniprot">
    <accession>A9BYD8</accession>
    <name>A9BYD8_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">ATP-dependent Clp protease proteolytic subunit</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="4" type="ordered locus">Daci_1633</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="5" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1 2">Belongs to the peptidase S14 family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX34277.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012203562.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_1633"/>
    <dbReference type="EnsemblBacteria" id="ABX34277">
        <property type="protein sequence ID" value="ABX34277"/>
        <property type="gene ID" value="Daci_1633"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_1633"/>
    <dbReference type="eggNOG" id="COG0740">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_052762_3_1_4"/>
    <dbReference type="OMA" id="RGAFLMI"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004176">
        <property type="term" value="F:ATP-dependent peptidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004252">
        <property type="term" value="F:serine-type endopeptidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006508">
        <property type="term" value="P:proteolysis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001907">
        <property type="entry name" value="ClpP"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029045">
        <property type="entry name" value="ClpP/crotonase-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023562">
        <property type="entry name" value="ClpP/TepA"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10381">
        <property type="entry name" value="PTHR10381"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00574">
        <property type="entry name" value="CLP_protease"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00127">
        <property type="entry name" value="CLPPROTEASEP"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52096">
        <property type="entry name" value="SSF52096"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="3">
        <location>
            <begin position="250"/>
            <end position="273"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00007039"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="RuleBase" id="RU003567"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="ABX34277.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="287" mass="30203" checksum="F52BDCAB868B64B6" modified="2008-01-15" version="1">MSIKALPGAPMGRPSASVRSEILPRAFERWNPGLRAALEESEEDRSISVYDVIGYDYWTGDGVTARRIAGALRSLGPGDVTVNINSPGGDMFEGLAIYNLLREHKGQVTVKVLGLAASAASVIAMSGDTVQIARAGFLMIHNAWVIAAGNRNDFREIADWLEPFDSAMADIYAARTGAEQKAMAKLMDAESWLGGSSAVEQGFADELLPSDQVAKGDAKAHASAARRVEAALRSSGLPKTEAMRLISELKSGAGDPSGSGEGDPTERGPVADLSQTAALAASLKNLF</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="74" xmlns="http://uniprot.org/uniprot">
    <accession>A9BYI6</accession>
    <name>A9BYI6_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Transcriptional regulator, TetR family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ordered locus">Daci_1889</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="5" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX34529.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012203814.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_1889"/>
    <dbReference type="PRIDE" id="A9BYI6"/>
    <dbReference type="EnsemblBacteria" id="ABX34529">
        <property type="protein sequence ID" value="ABX34529"/>
        <property type="gene ID" value="Daci_1889"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_1889"/>
    <dbReference type="eggNOG" id="COG1309">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_069356_25_2_4"/>
    <dbReference type="OMA" id="RWGDLQE"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009057">
        <property type="entry name" value="Homeobox-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001647">
        <property type="entry name" value="HTH_TetR"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036271">
        <property type="entry name" value="Tet_transcr_reg_TetR-rel_C_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011075">
        <property type="entry name" value="TetR_C"/>
    </dbReference>
    <dbReference type="Pfam" id="PF16859">
        <property type="entry name" value="TetR_C_11"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00440">
        <property type="entry name" value="TetR_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46689">
        <property type="entry name" value="SSF46689"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48498">
        <property type="entry name" value="SSF48498"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50977">
        <property type="entry name" value="HTH_TETR_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HTH tetR-type" evidence="3">
        <location>
            <begin position="22"/>
            <end position="82"/>
        </location>
    </feature>
    <feature type="DNA-binding region" description="H-T-H motif" evidence="1">
        <location>
            <begin position="45"/>
            <end position="64"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="1"/>
            <end position="21"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00335"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="PROSITE" id="PS50977"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="ABX34529.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="195" mass="20863" checksum="B6FC6A1093081074" modified="2008-01-15" version="1">MSTQVPSLSKTGGPARPGGRSARIQATVYQTVKGLLETMPREELSFPLIAAQAGVTPSTLYRRWGDIQQLLADVAVEIIRPTAPPLDTGTLEGDLLAWAEQFLEESASPLGRTMLRDMAAAAGNEHTPCACVEILRGQLAQIGERAARRGEAMPAADTLIDALAAPIVYRVLFDLPPSLEHVQARVRGLLQAETA</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2021-06-02" version="36" xmlns="http://uniprot.org/uniprot">
    <accession>A9BYQ7</accession>
    <name>A9BYQ7_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Daci_1960</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="2" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX34600.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012203885.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_1960"/>
    <dbReference type="EnsemblBacteria" id="ABX34600">
        <property type="protein sequence ID" value="ABX34600"/>
        <property type="gene ID" value="Daci_1960"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_1960"/>
    <dbReference type="HOGENOM" id="CLU_1831893_0_0_4"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ABX34600.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="140" mass="13949" checksum="F03546056197CF9B" modified="2008-01-15" version="1">MAGEYDPTSGMSPLELLLAGIGQGMNNTKSGIQQSLGQLSKQDIRDLRDLDSPLLATGMGRAGSVLGSTLSMVPVAFAPGANTLAGAGLLGAGMGLLQPSGSTDETLRNAAMFGLLGPASQLSGRALGGLLSMPSKAAAY</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2021-09-29" version="40" xmlns="http://uniprot.org/uniprot">
    <accession>A9BZ19</accession>
    <name>A9BZ19_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Daci_2481</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="2" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX35119.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012204400.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="ABX35119">
        <property type="protein sequence ID" value="ABX35119"/>
        <property type="gene ID" value="Daci_2481"/>
    </dbReference>
    <dbReference type="GeneID" id="60686847"/>
    <dbReference type="KEGG" id="dac:Daci_2481"/>
    <dbReference type="eggNOG" id="ENOG5032TE5">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_2104989_0_0_4"/>
    <dbReference type="OMA" id="ADNQCES"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.128.20">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012674">
        <property type="entry name" value="Calycin"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ABX35119.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="115" mass="12912" checksum="0398F7B0B8B20783" modified="2008-01-15" version="1">MSMLSMQYAGTLIGREAVIDFPDSKADVRYTPQGQMVWHVVDSLGHVSDGCERLSYLQVSDSLHFLNWIEKTGFTVSQVIDTAQGTVQAFWSFADPASEGGHRSSMFVEGRFRFR</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="82" xmlns="http://uniprot.org/uniprot">
    <accession>A9BZ48</accession>
    <name>A9BZ48_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="6">tRNA(Ile)-lysidine synthase</fullName>
            <ecNumber evidence="6">6.3.4.19</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="6">tRNA(Ile)-2-lysyl-cytidine synthase</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="6">tRNA(Ile)-lysidine synthetase</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="6" type="primary">tilS</name>
        <name evidence="9" type="ordered locus">Daci_2510</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="9 10" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="10" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="6">Ligates lysine onto the cytidine present at position 34 of the AUA codon-specific tRNA(Ile) that contains the anticodon CAU, in an ATP-dependent manner. Cytidine is converted to lysidine, thus changing the amino acid specificity of the tRNA from methionine to isoleucine.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1 6">
            <text>ATP + cytidine(34) in tRNA(Ile2) + L-lysine = AMP + diphosphate + H(+) + lysidine(34) in tRNA(Ile2)</text>
            <dbReference type="Rhea" id="RHEA:43744"/>
            <dbReference type="Rhea" id="RHEA-COMP:10625"/>
            <dbReference type="Rhea" id="RHEA-COMP:10670"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:32551"/>
            <dbReference type="ChEBI" id="CHEBI:33019"/>
            <dbReference type="ChEBI" id="CHEBI:82748"/>
            <dbReference type="ChEBI" id="CHEBI:83665"/>
            <dbReference type="ChEBI" id="CHEBI:456215"/>
            <dbReference type="EC" id="6.3.4.19"/>
        </reaction>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="6">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="domain">
        <text evidence="6">The N-terminal region contains the highly conserved SGGXDS motif, predicted to be a P-loop motif involved in ATP binding.</text>
    </comment>
    <comment type="similarity">
        <text evidence="6">Belongs to the tRNA(Ile)-lysidine synthase family.</text>
    </comment>
    <dbReference type="EC" id="6.3.4.19" evidence="6"/>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX35148.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_2510"/>
    <dbReference type="EnsemblBacteria" id="ABX35148">
        <property type="protein sequence ID" value="ABX35148"/>
        <property type="gene ID" value="Daci_2510"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_2510"/>
    <dbReference type="eggNOG" id="COG0037">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_018869_2_1_4"/>
    <dbReference type="OMA" id="PWQDPHN"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016879">
        <property type="term" value="F:ligase activity, forming carbon-nitrogen bonds"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006400">
        <property type="term" value="P:tRNA modification"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd01992">
        <property type="entry name" value="PP-ATPase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.620">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01161">
        <property type="entry name" value="tRNA_Ile_lys_synt"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014729">
        <property type="entry name" value="Rossmann-like_a/b/a_fold"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011063">
        <property type="entry name" value="TilS/TtcA_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012094">
        <property type="entry name" value="tRNA_Ile_lys_synt"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012795">
        <property type="entry name" value="tRNA_Ile_lys_synt_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015262">
        <property type="entry name" value="tRNA_Ile_lys_synt_subst-bd"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43033">
        <property type="entry name" value="PTHR43033"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01171">
        <property type="entry name" value="ATP_bind_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF09179">
        <property type="entry name" value="TilS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR02432">
        <property type="entry name" value="lysidine_TilS_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5 6" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="6" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="2 6" id="KW-0436">Ligase</keyword>
    <keyword evidence="4 6" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 6" id="KW-0819">tRNA processing</keyword>
    <feature type="domain" description="ATP_bind_3" evidence="7">
        <location>
            <begin position="15"/>
            <end position="202"/>
        </location>
    </feature>
    <feature type="domain" description="TilS" evidence="8">
        <location>
            <begin position="250"/>
            <end position="309"/>
        </location>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <begin position="19"/>
            <end position="24"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00000047"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022598"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022694"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01161"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="Pfam" id="PF01171"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="Pfam" id="PF09179"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="ABX35148.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="319" mass="34666" checksum="A5B5EDFF049EF24C" modified="2008-01-15" version="1">MDAAIHRFAPQLPLAVAFSGGADSTALLLACAERWPGQVVAIHVHHGLQSAADAFVGQCEKVCAQHAVPLKIRRVDARHAPGQSPEDAARQLRYATLIEAAREPWPVQGASGDPLPPVRSMALAQHADDQVETLLLALSRGAGVAGLAAMPAQWSRADLEWHRPLLDLPGQALRDWLAARGQAWVEDPTNADARYTRNRIRAQLLPALQQAFPQFRATFARSSRHCAEAAELLQEMAQADLAAIGTPPGITALQALSPARQANVLRHWLRSVHAITPSAAQLDQLLAQIGVCRTRGHRIHLKMGRGFVRRLGSVLDWYN</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="51" xmlns="http://uniprot.org/uniprot">
    <accession>A9BZ58</accession>
    <name>A9BZ58_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_2520</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX35158.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012204439.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_2520"/>
    <dbReference type="PRIDE" id="A9BZ58"/>
    <dbReference type="EnsemblBacteria" id="ABX35158">
        <property type="protein sequence ID" value="ABX35158"/>
        <property type="gene ID" value="Daci_2520"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_2520"/>
    <dbReference type="eggNOG" id="COG3333">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_022936_2_0_4"/>
    <dbReference type="OMA" id="AMEGNLM"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002823">
        <property type="entry name" value="DUF112_TM"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01970">
        <property type="entry name" value="TctA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="20"/>
            <end position="49"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="61"/>
            <end position="82"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="108"/>
            <end position="135"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="147"/>
            <end position="167"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="173"/>
            <end position="191"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="203"/>
            <end position="224"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="317"/>
            <end position="338"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="350"/>
            <end position="372"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="416"/>
            <end position="432"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="472"/>
            <end position="490"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX35158.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="504" mass="52654" checksum="2F2301B00E181DCF" modified="2008-01-15" version="1">MEIFDALMAGFATAITPANLLWALVGCALGTAVGVLPGIGPAVAVAMLLPITAKVEVTASMIFFAGIYYGAMYGGSTTSILLNTPGETASMVTAMEGNKMAKSGRAGAALATSAIGSFVAGTVATVVVTLFAPSVADFAVKLGPPEYFMLMVLAFTTVSAVLGQSALRGMTALFLGLALGCIGMDQISGAARYTMGKMELLDGVDIVLVAVGLFAVAEVLYAAMYEGKVVDTQNRMGRVHMTGRDWKRSWPAWLRGTVIGTPFGCIPAGGTEIPTFLSYATEKKLAKGENRAEFGTKGAIEGVAGPEAANNATVTAALIPLLTLGIPTSNTTAVLLGAFQNYGINPGPQLFSSSAALVWALIASLYIGNLMLLVLNLPMVGLWVKLLKIPRPQLYAGILIFATVGAYGMRQSAFDLFLLYGIGVLGVIMRRFDFPTAPVVVGMILGPLAEAQMRNAVSIGEGSWWIFLQRPMSLTLIIIVACVLIVPRVLKRLQPKPSPEAAAG</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="50" xmlns="http://uniprot.org/uniprot">
    <accession>A9BZ84</accession>
    <name>A9BZ84_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ordered locus">Daci_2546</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="5" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Periplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the UPF0065 (bug) family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX35184.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012204463.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_2546"/>
    <dbReference type="PRIDE" id="A9BZ84"/>
    <dbReference type="EnsemblBacteria" id="ABX35184">
        <property type="protein sequence ID" value="ABX35184"/>
        <property type="gene ID" value="Daci_2546"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_2546"/>
    <dbReference type="eggNOG" id="COG3181">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_045683_0_1_4"/>
    <dbReference type="OMA" id="RWNTELV"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0042597">
        <property type="term" value="C:periplasmic space"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.190.150">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005064">
        <property type="entry name" value="BUG"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR042100">
        <property type="entry name" value="Bug_dom1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR42928">
        <property type="entry name" value="PTHR42928"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03401">
        <property type="entry name" value="TctC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF017082">
        <property type="entry name" value="YflP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="3">
        <location>
            <begin position="1"/>
            <end position="25"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5002736166" evidence="3">
        <location>
            <begin position="26"/>
            <end position="324"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004418"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00006987"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="ABX35184.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="324" mass="33922" checksum="B48DF4D36A1C9705" modified="2008-01-15" version="1">MHQRRLIAGGALAALLSLAVGTAQAQDFPPKKPVVMVVGFAAGGSADIAARIIAKKLGENIGQSVVVENKPGAGGNLAHTQVANGPSDGSVLLFGSIGPLAIAPHFMKIGYDPLKDLAPITMGVNFPNVLVVPAATGIKTLGEYVAKAKREPGKLDFASTGPGSASHLAGELLNDVAKIDTLHVPYKGGAPALQDVLGNRVTSFYAAPPTALPHIESGKLIPLATTGLTRPAYLPNVPTVAESFPGFNATNWYAFVASAKTPKPLLDRWNIELVKVLNTPEVRDNLLKHGQTAAPGTREELGQFIAAEHAKWGRIIRERKITAD</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="46" xmlns="http://uniprot.org/uniprot">
    <accession>A9BZH8</accession>
    <name>A9BZH8_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="6">Cell morphology protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ordered locus">Daci_2940</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="7" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="pathway">
        <text evidence="2">Glycan biosynthesis; alginate biosynthesis.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Periplasm</location>
        </subcellularLocation>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX35578.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012204788.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_2940"/>
    <dbReference type="PRIDE" id="A9BZH8"/>
    <dbReference type="EnsemblBacteria" id="ABX35578">
        <property type="protein sequence ID" value="ABX35578"/>
        <property type="gene ID" value="Daci_2940"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_2940"/>
    <dbReference type="eggNOG" id="ENOG5032RMC">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_057510_0_0_4"/>
    <dbReference type="OMA" id="GCPGWLF"/>
    <dbReference type="UniPathway" id="UPA00286"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0042597">
        <property type="term" value="C:periplasmic space"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0042121">
        <property type="term" value="P:alginic acid biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniPathway"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR031811">
        <property type="entry name" value="ALGX/ALGJ_SGNH-like"/>
    </dbReference>
    <dbReference type="Pfam" id="PF16822">
        <property type="entry name" value="ALGX"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-0016">Alginate biosynthesis</keyword>
    <keyword evidence="4" id="KW-0472">Membrane</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="4" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="4">
        <location>
            <begin position="18"/>
            <end position="37"/>
        </location>
    </feature>
    <feature type="domain" description="ALGX" evidence="5">
        <location>
            <begin position="91"/>
            <end position="352"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004418"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00005182"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022841"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="Pfam" id="PF16822"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="ABX35578.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="377" mass="40320" checksum="220EB16362BC7118" modified="2008-01-15" version="1">MDPTAQELQTDKGHRRNAWIWGALLLSGLAWGGWTLASGGPKAGELQLAAWLDGRAGAALNKGLRLPAQSSLETGQAALRYRLLGDTGAQVALGCPQWMFYRDGLRPQPGTGAAPFEARQRLLRHWTRQLQDKGIATLVVAVPDKSRIEAAHLCGLPVAPVMLQRLDLWQQRLQADGIAFADLRPALQTQEQAQPVFFRTDVHMNAEGARAAALAVAQAALPLLGGQRGAQAFEETAPGPLQPLPGDLLALAGLADAPAGWRPRRDQVRPQTITPVRGGGLLDETPPVQVLLAGSSNGLRSNFAPQLGRALGQEVWNLSMDGGQFSGAMVAALKRRASWPASLRLVIWEFSENTLSLPLTDDEKAALKEMDAASPPA</sequence>
</entry>
<entry dataset="Swiss-Prot" created="2009-03-24" modified="2022-08-03" version="76" xmlns="http://uniprot.org/uniprot">
    <accession>A9BZN0</accession>
    <name>YCIB_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Inner membrane-spanning protein YciB</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="1" type="primary">yciB</name>
        <name type="ordered locus">Daci_3300</name>
    </gene>
    <organism>
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference key="1">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain>DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="1">Plays a role in cell envelope biogenesis, maintenance of cell envelope integrity and membrane homeostasis.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Cell inner membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="1">Belongs to the YciB family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX35938.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012205138.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A9BZN0"/>
    <dbReference type="STRING" id="398578.Daci_3300"/>
    <dbReference type="PRIDE" id="A9BZN0"/>
    <dbReference type="EnsemblBacteria" id="ABX35938">
        <property type="protein sequence ID" value="ABX35938"/>
        <property type="gene ID" value="Daci_3300"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_3300"/>
    <dbReference type="eggNOG" id="COG2917">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_089554_2_0_4"/>
    <dbReference type="OMA" id="AWVNFKL"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005887">
        <property type="term" value="C:integral component of plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00189">
        <property type="entry name" value="YciB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006008">
        <property type="entry name" value="YciB"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR36917">
        <property type="entry name" value="PTHR36917"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04279">
        <property type="entry name" value="IspA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00997">
        <property type="entry name" value="ispZ"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword id="KW-0997">Cell inner membrane</keyword>
    <keyword id="KW-1003">Cell membrane</keyword>
    <keyword id="KW-0472">Membrane</keyword>
    <keyword id="KW-1185">Reference proteome</keyword>
    <keyword id="KW-0812">Transmembrane</keyword>
    <keyword id="KW-1133">Transmembrane helix</keyword>
    <feature type="chain" id="PRO_1000098879" description="Inner membrane-spanning protein YciB">
        <location>
            <begin position="1"/>
            <end position="199"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="3"/>
            <end position="23"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="47"/>
            <end position="67"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="76"/>
            <end position="96"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="119"/>
            <end position="139"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="149"/>
            <end position="169"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="180"/>
            <end position="199"/>
        </location>
    </feature>
    <evidence type="ECO:0000255" key="1">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00189"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <sequence length="199" mass="22275" checksum="3462B046A78E3339" modified="2008-01-15" version="1">MKLLIDFFPIILFFVAFKVWGIYTATAVAIVATIAQIAYLRVRHGKVEPMQWVSLGVIVLFGGATLLAHNDTFIKWKPSVLYWLMGSALLIGQLVFRKNLLRSVMGAQLQLPDNAWRTLNWSWAAFFAVMGALNLVIAYRFDTDTWVNFKLFGGMGLMLVFVIGQAIYMSRFMQEDKGEAAAATPDALPPPGVQQDKQP</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="77" xmlns="http://uniprot.org/uniprot">
    <accession>A9BZT0</accession>
    <name>A9BZT0_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="6">Aldehyde dehydrogenase (NAD(+))</fullName>
            <ecNumber evidence="6">1.2.1.3</ecNumber>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ordered locus">Daci_3350</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="7" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="4">Belongs to the aldehyde dehydrogenase family.</text>
    </comment>
    <dbReference type="EC" id="1.2.1.3" evidence="6"/>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX35988.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012205188.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_3350"/>
    <dbReference type="PRIDE" id="A9BZT0"/>
    <dbReference type="EnsemblBacteria" id="ABX35988">
        <property type="protein sequence ID" value="ABX35988"/>
        <property type="gene ID" value="Daci_3350"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_3350"/>
    <dbReference type="eggNOG" id="COG1012">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_005391_0_2_4"/>
    <dbReference type="OMA" id="PAAWMNN"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004029">
        <property type="term" value="F:aldehyde dehydrogenase (NAD+) activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043878">
        <property type="term" value="F:glyceraldehyde-3-phosphate dehydrogenase (NAD+) (non-phosphorylating) activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.309.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.605.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016161">
        <property type="entry name" value="Ald_DH/histidinol_DH"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016163">
        <property type="entry name" value="Ald_DH_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016160">
        <property type="entry name" value="Ald_DH_CS_CYS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029510">
        <property type="entry name" value="Ald_DH_CS_GLU"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016162">
        <property type="entry name" value="Ald_DH_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015590">
        <property type="entry name" value="Aldehyde_DH_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00171">
        <property type="entry name" value="Aldedh"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53720">
        <property type="entry name" value="SSF53720"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00070">
        <property type="entry name" value="ALDEHYDE_DEHYDR_CYS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00687">
        <property type="entry name" value="ALDEHYDE_DEHYDR_GLU"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="1 4 6" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Aldedh" evidence="5">
        <location>
            <begin position="31"/>
            <end position="498"/>
        </location>
    </feature>
    <feature type="active site" evidence="2">
        <location>
            <position position="275"/>
        </location>
    </feature>
    <feature type="active site" evidence="3">
        <location>
            <position position="309"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023002"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU10007"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU10008"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="RuleBase" id="RU003345"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="Pfam" id="PF00171"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="ABX35988.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="502" mass="53808" checksum="165DE7814C0F5745" modified="2008-01-15" version="1">MNLSDIQHQITERASAFLNRGTHDLFIDGQWVAARTGQRLSTVNPATEAVIAEVASAGPADVDLAVRAAHRALHLGPWGRMRPVERERLMLRLADLMETHAQALAEVESLDNGKSAAIARAVDIAMAIDSIRYMAGWATKIEGMTHEHSVPFAPEAQMFTYTRREPVGVVAAVVPWNFPLLMATWKLAPALAAGCTLVLKPAEQTPLTALMLAELIQEAGFPPGVFNVVTGDGPGTGAPLVSHPLVNKVSFTGSTEVGKLIGHACMDNMTRITLELGGKSPVIVLDDCDPATAAAGAANAIFFNHGQVCCAGSRLYVHKSMFDRVVADVADQAARLTLGHGLDPSAQMGPLVSQEQMERVCSYIDIGRSQGAEVVTGGARAGQRGYFVQPTVMTGVQHDHRVAREEIFGPVLVAMPYDDLDEVAAWANDTPYGLGASIWSNNLSKVHRLIPKIQSGTVWVNCHSTLDPGMPFGGYKQSGMGRDMGRTALDAYLETKSVFINL</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="57" xmlns="http://uniprot.org/uniprot">
    <accession>A9BZY1</accession>
    <name>A9BZY1_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ordered locus">Daci_3609</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="5" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Periplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the UPF0065 (bug) family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX36243.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012205443.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_3609"/>
    <dbReference type="PRIDE" id="A9BZY1"/>
    <dbReference type="EnsemblBacteria" id="ABX36243">
        <property type="protein sequence ID" value="ABX36243"/>
        <property type="gene ID" value="Daci_3609"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_3609"/>
    <dbReference type="eggNOG" id="COG3181">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_045683_0_0_4"/>
    <dbReference type="OMA" id="THDSAWP"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0042597">
        <property type="term" value="C:periplasmic space"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.190.150">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005064">
        <property type="entry name" value="BUG"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR042100">
        <property type="entry name" value="Bug_dom1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006311">
        <property type="entry name" value="TAT_signal"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR42928">
        <property type="entry name" value="PTHR42928"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03401">
        <property type="entry name" value="TctC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF017082">
        <property type="entry name" value="YflP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51318">
        <property type="entry name" value="TAT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="3">
        <location>
            <begin position="1"/>
            <end position="33"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5002735246" evidence="3">
        <location>
            <begin position="34"/>
            <end position="339"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004418"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00006987"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="ABX36243.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="339" mass="35735" checksum="7D967A57C19768D6" modified="2008-01-15" version="1">MQDNPSQRPDRRRFLRAAGAASLAAGLPWATTAATATTHDSAWPTRPIKWVVPYLAGTSPDTAARIVAEALSAQLGQPVVIDNRAGAGGNIGARQVAKAPADGYTLLYSGSPMAAAMRMYKSPGYDVFKDFRHVLGMSRSDILVVVHADSGMRTLDDLAARAKARPGALDYASGGVGTPSHLGVEMLASSMGLQVNHVPYKGASELVNAVLGQQVAFGAPLFSVAYPQVLAGKLVPLAIAGPQRNAKLPQVQTLAELGVPNVNLTSWGGVSVPAATPEPIVQRLRTALEEVLRQPRVIALLEQEGGKVAITSADAYAKGFEREIQFTQSMMQRVGIQPI</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="53" xmlns="http://uniprot.org/uniprot">
    <accession>A9C051</accession>
    <name>A9C051_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">Phytase-like domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Daci_3681</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="4" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX36313.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012205509.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_3681"/>
    <dbReference type="PRIDE" id="A9C051"/>
    <dbReference type="EnsemblBacteria" id="ABX36313">
        <property type="protein sequence ID" value="ABX36313"/>
        <property type="gene ID" value="Daci_3681"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_3681"/>
    <dbReference type="eggNOG" id="COG4222">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_024928_0_0_4"/>
    <dbReference type="OMA" id="CADTRPL"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027372">
        <property type="entry name" value="Phytase-like_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13449">
        <property type="entry name" value="Phytase-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="1">
        <location>
            <begin position="1"/>
            <end position="25"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5002732732" description="Phytase-like domain-containing protein" evidence="1">
        <location>
            <begin position="26"/>
            <end position="526"/>
        </location>
    </feature>
    <feature type="domain" description="Phytase-like" evidence="2">
        <location>
            <begin position="87"/>
            <end position="454"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF13449"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ABX36313.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="526" mass="55774" checksum="BF45A4A27D4070CB" modified="2008-01-15" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="86" xmlns="http://uniprot.org/uniprot">
    <accession>A9C071</accession>
    <name>A9C071_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="6">Transcriptional regulator, AraC family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ordered locus">Daci_4006</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="7" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX36637.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012205831.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_4006"/>
    <dbReference type="PRIDE" id="A9C071"/>
    <dbReference type="EnsemblBacteria" id="ABX36637">
        <property type="protein sequence ID" value="ABX36637"/>
        <property type="gene ID" value="Daci_4006"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_4006"/>
    <dbReference type="eggNOG" id="COG2207">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_000445_81_0_4"/>
    <dbReference type="OMA" id="TRWRIEL"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003700">
        <property type="term" value="F:DNA-binding transcription factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043565">
        <property type="term" value="F:sequence-specific DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR032783">
        <property type="entry name" value="AraC_lig"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009057">
        <property type="entry name" value="Homeobox-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018060">
        <property type="entry name" value="HTH_AraC"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12852">
        <property type="entry name" value="Cupin_6"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12833">
        <property type="entry name" value="HTH_18"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00342">
        <property type="entry name" value="HTH_ARAC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46689">
        <property type="entry name" value="SSF46689"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01124">
        <property type="entry name" value="HTH_ARAC_FAMILY_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0804">Transcription</keyword>
    <keyword evidence="1" id="KW-0805">Transcription regulation</keyword>
    <feature type="domain" description="HTH araC/xylS-type" evidence="5">
        <location>
            <begin position="210"/>
            <end position="308"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="4">
        <location>
            <begin position="308"/>
            <end position="330"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023015"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023163"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="PROSITE" id="PS01124"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="ABX36637.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="330" mass="36262" checksum="079632996BD089A2" modified="2008-01-15" version="1">MDVLSEVLDICRSERAVTARFALTAPWSLKSTGVTGAMIRMARGAPYWIQVEGMQPLRVEPGDLVMLPMGAAHVVASDLGMACELFSRLISRHAEGPQDENPLVFSHGGGGEATDMFSALLWFSAYCRHSVFRILPPLIHIRASDLPLADCLAATMQSLTLETLARRPGWRLSAARMGELLLVNILREHLAREAAVGEGWLRGLGDACIARTIVCMHREPQRSWSVETLAAEAGMSRTRFSMRFKQLVGATPIGYLTAHRMALAAQQMEAGGLSSARIAENAGYDSPKVFARAFRRWSGHTPKAWLAQEAAKRSGWQQQEGRIRGLEQDP</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="82" xmlns="http://uniprot.org/uniprot">
    <accession>A9C0B4</accession>
    <name>A9C0B4_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="5">Glutamyl-Q tRNA(Asp) synthetase</fullName>
            <shortName evidence="5">Glu-Q-RSs</shortName>
            <ecNumber evidence="5">6.1.1.-</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="5" type="primary">gluQ</name>
        <name evidence="8" type="ordered locus">Daci_4049</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="9" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="5">Catalyzes the tRNA-independent activation of glutamate in presence of ATP and the subsequent transfer of glutamate onto a tRNA(Asp). Glutamate is transferred on the 2-amino-5-(4,5-dihydroxy-2-cyclopenten-1-yl) moiety of the queuosine in the wobble position of the QUC anticodon.</text>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="5">
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </cofactor>
        <text evidence="5">Binds 1 zinc ion per subunit.</text>
    </comment>
    <comment type="similarity">
        <text evidence="5">Belongs to the class-I aminoacyl-tRNA synthetase family. GluQ subfamily.</text>
    </comment>
    <dbReference type="EC" id="6.1.1.-" evidence="5"/>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX36680.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012205874.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_4049"/>
    <dbReference type="PRIDE" id="A9C0B4"/>
    <dbReference type="EnsemblBacteria" id="ABX36680">
        <property type="protein sequence ID" value="ABX36680"/>
        <property type="gene ID" value="Daci_4049"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_4049"/>
    <dbReference type="eggNOG" id="COG0008">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_015768_0_1_4"/>
    <dbReference type="OMA" id="WLLRMED"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004812">
        <property type="term" value="F:aminoacyl-tRNA ligase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008270">
        <property type="term" value="F:zinc ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006424">
        <property type="term" value="P:glutamyl-tRNA aminoacylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006400">
        <property type="term" value="P:tRNA modification"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.620">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01428">
        <property type="entry name" value="Glu_Q_tRNA_synth"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR022380">
        <property type="entry name" value="Glu-Q_tRNA(Asp)_Synthase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000924">
        <property type="entry name" value="Glu/Gln-tRNA-synth"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020058">
        <property type="entry name" value="Glu/Gln-tRNA-synth_Ib_cat-dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014729">
        <property type="entry name" value="Rossmann-like_a/b/a_fold"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00749">
        <property type="entry name" value="tRNA-synt_1c"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00987">
        <property type="entry name" value="TRNASYNTHGLU"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR03838">
        <property type="entry name" value="queuosine_YadB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4 5 6" id="KW-0030">Aminoacyl-tRNA synthetase</keyword>
    <keyword evidence="3 5 6" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="1 5 6" id="KW-0436">Ligase</keyword>
    <keyword evidence="5" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="2 5 6" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="6" id="KW-0648">Protein biosynthesis</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="5" id="KW-0862">Zinc</keyword>
    <feature type="domain" description="tRNA-synt_1c" evidence="7">
        <location>
            <begin position="23"/>
            <end position="266"/>
        </location>
    </feature>
    <feature type="region of interest" description="Glutamate binding" evidence="5">
        <location>
            <begin position="23"/>
            <end position="27"/>
        </location>
    </feature>
    <feature type="short sequence motif" description="'HIGH' region" evidence="5">
        <location>
            <begin position="26"/>
            <end position="36"/>
        </location>
    </feature>
    <feature type="short sequence motif" description="'KMSKS' region" evidence="5">
        <location>
            <begin position="259"/>
            <end position="263"/>
        </location>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <position position="59"/>
        </location>
        <ligand>
            <name>L-glutamate</name>
            <dbReference type="ChEBI" id="CHEBI:29985"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <position position="115"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <position position="117"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <position position="141"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <position position="145"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <position position="203"/>
        </location>
        <ligand>
            <name>L-glutamate</name>
            <dbReference type="ChEBI" id="CHEBI:29985"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <position position="221"/>
        </location>
        <ligand>
            <name>L-glutamate</name>
            <dbReference type="ChEBI" id="CHEBI:29985"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <position position="262"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022598"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023146"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01428"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="RuleBase" id="RU363037"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="Pfam" id="PF00749"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="ABX36680.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="312" mass="34294" checksum="981D8997255D9667" modified="2008-01-15" version="1">MIPAAPESAETGPAPAPSPYVGRFAPSPTGLLHAGSLVAALASWLDARAHGGRWLVRIEDIDPPRCQPGADTAILNQLATCGLLPDEEPVWQSRRHTFYESALERLKACGLAYPCGCTRKDIEAAWENLGWAHERHVERPYPGTCRDGLHGKSARAWRFALDRFTRHDPVLHWQDRRLGAQQQDVIHGVGDFVLRRADGLWAYQLAVVVDDGLQGITHVVRGADLADNTPRQMLLQRALGIDHPQYLHTPLVLMPDGEKLSKQHGAPALDLSAPVTALRTAAAHLGLPQPSPQAALGEALQFWVRGWRHTYN</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="82" xmlns="http://uniprot.org/uniprot">
    <accession>A9C0J6</accession>
    <name>A9C0J6_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Transcriptional regulator, IclR family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ordered locus">Daci_4439</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="6" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX37069.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012206241.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_4439"/>
    <dbReference type="PRIDE" id="A9C0J6"/>
    <dbReference type="EnsemblBacteria" id="ABX37069">
        <property type="protein sequence ID" value="ABX37069"/>
        <property type="gene ID" value="Daci_4439"/>
    </dbReference>
    <dbReference type="GeneID" id="60689015"/>
    <dbReference type="KEGG" id="dac:Daci_4439"/>
    <dbReference type="eggNOG" id="COG1414">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_062618_0_1_4"/>
    <dbReference type="OMA" id="LDKRDWI"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006355">
        <property type="term" value="P:regulation of transcription, DNA-templated"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.450.40">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029016">
        <property type="entry name" value="GAF-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014757">
        <property type="entry name" value="Tscrpt_reg_IclR_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005471">
        <property type="entry name" value="Tscrpt_reg_IclR_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036390">
        <property type="entry name" value="WH_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF09339">
        <property type="entry name" value="HTH_IclR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01614">
        <property type="entry name" value="IclR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00346">
        <property type="entry name" value="HTH_ICLR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46785">
        <property type="entry name" value="SSF46785"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51077">
        <property type="entry name" value="HTH_ICLR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51078">
        <property type="entry name" value="ICLR_ED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0804">Transcription</keyword>
    <keyword evidence="1" id="KW-0805">Transcription regulation</keyword>
    <feature type="domain" description="HTH iclR-type" evidence="3">
        <location>
            <begin position="13"/>
            <end position="80"/>
        </location>
    </feature>
    <feature type="domain" description="IclR-ED" evidence="4">
        <location>
            <begin position="74"/>
            <end position="256"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023015"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023163"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="PROSITE" id="PS51077"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="PROSITE" id="PS51078"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="ABX37069.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="256" mass="28424" checksum="96B5CE0655591D50" modified="2008-01-15" version="1">MTTPSTLAQRDWIAGLERGVSIIEAFDDAHPRMTAAEAGQRTGMTRTAARRYLLTLQHMGYVAGDGKLFWLTPRVLRLGQSYLESARLPRIVQPFLQRVAAGTHETAYLAVLDDDEVVYIARNGPNRNMNTGYVLGARVPAQVTAAGMLMLSMRSDAELEHWLDNRALTVFTSHTITCPAEMRRELALIRTQDWALCEQQLNLDSRGIAVPLRDRHGALAGALNITMPMGRETGKDAVARVLPMLRETAQAMRDLI</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="71" xmlns="http://uniprot.org/uniprot">
    <accession>A9C0M6</accession>
    <name>A9C0M6_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="8">Acyl-CoA dehydrogenase domain protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="8" type="ordered locus">Daci_4469</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="9" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>FAD</name>
            <dbReference type="ChEBI" id="CHEBI:57692"/>
        </cofactor>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the acyl-CoA dehydrogenase family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX37099.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012206271.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_4469"/>
    <dbReference type="PRIDE" id="A9C0M6"/>
    <dbReference type="EnsemblBacteria" id="ABX37099">
        <property type="protein sequence ID" value="ABX37099"/>
        <property type="gene ID" value="Daci_4469"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_4469"/>
    <dbReference type="eggNOG" id="COG1960">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_018204_0_2_4"/>
    <dbReference type="OMA" id="FQGLRFM"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003995">
        <property type="term" value="F:acyl-CoA dehydrogenase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0050660">
        <property type="term" value="F:flavin adenine dinucleotide binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.540.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.110.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006089">
        <property type="entry name" value="Acyl-CoA_DH_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006091">
        <property type="entry name" value="Acyl-CoA_Oxase/DH_mid-dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR046373">
        <property type="entry name" value="Acyl-CoA_Oxase/DH_mid-dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036250">
        <property type="entry name" value="AcylCo_DH-like_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009075">
        <property type="entry name" value="AcylCo_DH/oxidase_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013786">
        <property type="entry name" value="AcylCoA_DH/ox_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037069">
        <property type="entry name" value="AcylCoA_DH/ox_N_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009100">
        <property type="entry name" value="AcylCoA_DH/oxidase_NM_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00441">
        <property type="entry name" value="Acyl-CoA_dh_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02770">
        <property type="entry name" value="Acyl-CoA_dh_M"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02771">
        <property type="entry name" value="Acyl-CoA_dh_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47203">
        <property type="entry name" value="SSF47203"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56645">
        <property type="entry name" value="SSF56645"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00072">
        <property type="entry name" value="ACYL_COA_DH_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-0274">FAD</keyword>
    <keyword evidence="3" id="KW-0285">Flavoprotein</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Acyl-CoA_dh_N" evidence="7">
        <location>
            <begin position="14"/>
            <end position="128"/>
        </location>
    </feature>
    <feature type="domain" description="Acyl-CoA_dh_M" evidence="6">
        <location>
            <begin position="132"/>
            <end position="225"/>
        </location>
    </feature>
    <feature type="domain" description="Acyl-CoA_dh_1" evidence="5">
        <location>
            <begin position="237"/>
            <end position="386"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001974"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00009347"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022630"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022827"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="Pfam" id="PF00441"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="Pfam" id="PF02770"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="Pfam" id="PF02771"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="ABX37099.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="389" mass="41751" checksum="11E11341CADFC316" modified="2008-01-15" version="1">MRDSSWLDWPFFDDAHRTLAHEADAWCAQSLGDVDHHDADAACRQLVKALGEAGWLRYAVPSGPGGAWGGALPEVDSRAVCILRETLARHEGLADFAFAMQGLGSGAISLMGSDALRQRYLPRVARGEAIAAFALSEPDAGSDVAAMACEARLEGDHYVLNGAKTWISNGGIADFYCVFARTGEAPGARGISAFVVDADTPGFSIGERIELIAPHPLATIRFDNCRIPVSQRLGEPGQGFKLAMMTLDIFRASVAAAALGFARRALDEGLARAKSRRMFGQTLGDLQLTQAALGDMDTAIDASALLTYRAAWMRDVKKTRTTREAAMAKMTATESAQAVIDRALQMFGGAGVVSGMPVETLYREIRALRIYEGATEVQKLIIARELLKA</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="40" xmlns="http://uniprot.org/uniprot">
    <accession>A9C0N7</accession>
    <name>A9C0N7_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Daci_4481</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="2" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX37110.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_4481"/>
    <dbReference type="PRIDE" id="A9C0N7"/>
    <dbReference type="EnsemblBacteria" id="ABX37110">
        <property type="protein sequence ID" value="ABX37110"/>
        <property type="gene ID" value="Daci_4481"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_4481"/>
    <dbReference type="eggNOG" id="ENOG50340YM">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_1369623_0_0_4"/>
    <dbReference type="OMA" id="HFALEYY"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ABX37110.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="196" mass="23204" checksum="D46239CFA1E49FEE" modified="2008-01-15" version="1">MHRTGGINMNLNNIISERLRDSKLEPSLRERYNIALKKEFSDDLPNCGLFIDNTFSGDDSIDYEKGIRLFLGKKWTEVDLDYLYEEYVQFLMLNDDGFIYYLPSFLLYFYDLKHFALEYYIYFMDKLELGLNESKATYNVGRRRQDYSGFNKLSHEQSKLVALFLVNTANLLPDGYMEKAQAQRALTNYWGNFLLF</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="60" xmlns="http://uniprot.org/uniprot">
    <accession>A9C0V4</accession>
    <name>A9C0V4_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">Serine O-acetyltransferase</fullName>
            <ecNumber evidence="3">2.3.1.30</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="6" type="ordered locus">Daci_5789</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="7" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>acetyl-CoA + L-serine = CoA + O-acetyl-L-serine</text>
            <dbReference type="Rhea" id="RHEA:24560"/>
            <dbReference type="ChEBI" id="CHEBI:33384"/>
            <dbReference type="ChEBI" id="CHEBI:57287"/>
            <dbReference type="ChEBI" id="CHEBI:57288"/>
            <dbReference type="ChEBI" id="CHEBI:58340"/>
            <dbReference type="EC" id="2.3.1.30"/>
        </reaction>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the transferase hexapeptide repeat family.</text>
    </comment>
    <dbReference type="EC" id="2.3.1.30" evidence="3"/>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX38417.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012207586.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_5789"/>
    <dbReference type="PRIDE" id="A9C0V4"/>
    <dbReference type="EnsemblBacteria" id="ABX38417">
        <property type="protein sequence ID" value="ABX38417"/>
        <property type="gene ID" value="Daci_5789"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_5789"/>
    <dbReference type="eggNOG" id="COG1045">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_051638_1_0_4"/>
    <dbReference type="OMA" id="SSAHWQL"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009001">
        <property type="term" value="F:serine O-acetyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="CDD" id="cd03354">
        <property type="entry name" value="LbH_SAT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.3130.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001451">
        <property type="entry name" value="Hexapep"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045304">
        <property type="entry name" value="LbH_SAT"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR042122">
        <property type="entry name" value="Ser_AcTrfase_N_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011004">
        <property type="entry name" value="Trimer_LpxA-like_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00132">
        <property type="entry name" value="Hexapep"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51161">
        <property type="entry name" value="SSF51161"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5 6" id="KW-0012">Acyltransferase</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4 6" id="KW-0808">Transferase</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00000169"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00007274"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00013266"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023315"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="ABX38417.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="304" mass="33084" checksum="A1A10DF19EAF1DB9" modified="2008-01-15" version="1">MASFDIAGLTQNLHAARREWREAHGRTQEPGAREFPSRDALSTLIDQLKAALFPMRLGPHDLRQESEDIFVAHQLDSALHALLGQIRLELRLSAPHTAAGADAMALDIARAFAESLPQIRRLLDSDVLAAFHGDPAARSVDEVLLCYPGVLAMIHHRLAHQLYLLEQPLLARIVAELSHAQTGIDIHPGAKIGRGFFMDHGTGVVIGETAVIGERVRLYQAVTLGAKRFPTDEHGHLRKGLARHPVVEDDVVIYAGATILGRVTLGRGAVIGGNVWVTEDVPPGAHVTQAHAREHAQQPREVAL</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="58" xmlns="http://uniprot.org/uniprot">
    <accession>A9C0W0</accession>
    <name>A9C0W0_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ordered locus">Daci_5795</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="5" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Periplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the UPF0065 (bug) family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX38423.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012207592.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_5795"/>
    <dbReference type="PRIDE" id="A9C0W0"/>
    <dbReference type="EnsemblBacteria" id="ABX38423">
        <property type="protein sequence ID" value="ABX38423"/>
        <property type="gene ID" value="Daci_5795"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_5795"/>
    <dbReference type="eggNOG" id="COG3181">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_045683_1_1_4"/>
    <dbReference type="OMA" id="MYAPLRY"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0042597">
        <property type="term" value="C:periplasmic space"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.190.150">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005064">
        <property type="entry name" value="BUG"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR042100">
        <property type="entry name" value="Bug_dom1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR42928">
        <property type="entry name" value="PTHR42928"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03401">
        <property type="entry name" value="TctC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF017082">
        <property type="entry name" value="YflP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="3">
        <location>
            <begin position="1"/>
            <end position="24"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5002733243" evidence="3">
        <location>
            <begin position="25"/>
            <end position="331"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004418"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00006987"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="ABX38423.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="331" mass="34604" checksum="D2DF28C0D19D0465" modified="2008-01-15" version="1">MTPQARRALCAGLAAACMALPALAQAQAQSEAPYPSRNIEMIVAYGPGGGTDLVARLLARHLEKKLGGSVVVLNRPGAGGGIGFGELARAKPDGYTIGFINTPNVLTIPIERKSSFHWSQYDLLGNLVDDPGGFAIHNSNAITTLAGLAAYARANPGAVTVGTTGTGSDDHLAMLLFAKATGTQLTHVPYKGAGEVRAAATGQQITIGAINVGEVLAYQKGGTPIRLLGQMSAARSSLAPQVPTFKEQGIDIELASLRGLAAPKGLPEGVRKKLVDAVAAIAADPQFRQQAEAMYAPLRYLAPPAYAAELERTEAGFRKLWTEMPWQDGKP</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="49" xmlns="http://uniprot.org/uniprot">
    <accession>A9C0Y4</accession>
    <name>A9C0Y4_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ordered locus">Daci_5819</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="5" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Periplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the UPF0065 (bug) family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX38447.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_5819"/>
    <dbReference type="PRIDE" id="A9C0Y4"/>
    <dbReference type="EnsemblBacteria" id="ABX38447">
        <property type="protein sequence ID" value="ABX38447"/>
        <property type="gene ID" value="Daci_5819"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_5819"/>
    <dbReference type="eggNOG" id="COG3181">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_045683_0_2_4"/>
    <dbReference type="OMA" id="KMSELWR"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0042597">
        <property type="term" value="C:periplasmic space"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.190.150">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005064">
        <property type="entry name" value="BUG"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR042100">
        <property type="entry name" value="Bug_dom1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR42928">
        <property type="entry name" value="PTHR42928"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03401">
        <property type="entry name" value="TctC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF017082">
        <property type="entry name" value="YflP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="3">
        <location>
            <begin position="1"/>
            <end position="32"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5002732748" evidence="3">
        <location>
            <begin position="33"/>
            <end position="329"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004418"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00006987"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="ABX38447.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="329" mass="34963" checksum="3581BB43DDC07552" modified="2008-01-15" version="1">MEIPMTHFQRFLSMAFLALGLVLGLAPLPGHAAEFPEKPVRIVVPFPAGAAADAAMRVVARKMSELWRQPVVIDNRPGVHGFQLVSSAPADGYTLLLGAGSGMVTAPLLSSKLSYNPSRDFVPVGRVLINVPILTTHPSLNVSTVQELVALARKNPGALNYSSSGNGTPGHLSMEMFQAATGTRMLQIPYKGGAPAVNELVGGHVQLGINAVPSVVLQIKAGKLTPLAVASATRSRALPQVPTMAEAGVKDFEYDIWYALFAPTGTPPAVVAKVNAALVRSLQDREVAKSLEAQGAEPAPTTPQELARFMQEDTARWAKLVKERNLKLD</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="64" xmlns="http://uniprot.org/uniprot">
    <accession>A9C123</accession>
    <name>A9C123_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="6">Efflux transporter, RND family, MFP subunit</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ordered locus">Daci_5858</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="7" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX38486.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012207655.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_5858"/>
    <dbReference type="PRIDE" id="A9C123"/>
    <dbReference type="EnsemblBacteria" id="ABX38486">
        <property type="protein sequence ID" value="ABX38486"/>
        <property type="gene ID" value="Daci_5858"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_5858"/>
    <dbReference type="eggNOG" id="COG0845">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_018816_2_1_4"/>
    <dbReference type="OMA" id="YVRVQIE"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016020">
        <property type="term" value="C:membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0022857">
        <property type="term" value="F:transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR032317">
        <property type="entry name" value="HlyD_D23"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006143">
        <property type="entry name" value="RND_pump_MFP"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006311">
        <property type="entry name" value="TAT_signal"/>
    </dbReference>
    <dbReference type="Pfam" id="PF16576">
        <property type="entry name" value="HlyD_D23"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01730">
        <property type="entry name" value="RND_mfp"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51318">
        <property type="entry name" value="TAT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="4">
        <location>
            <begin position="1"/>
            <end position="25"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5002735291" evidence="4">
        <location>
            <begin position="26"/>
            <end position="409"/>
        </location>
    </feature>
    <feature type="domain" description="HlyD_D23" evidence="5">
        <location>
            <begin position="67"/>
            <end position="298"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="3">
        <location>
            <begin position="389"/>
            <end position="409"/>
        </location>
    </feature>
    <feature type="coiled-coil region" evidence="2">
        <location>
            <begin position="147"/>
            <end position="176"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00009477"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="Pfam" id="PF16576"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="ABX38486.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="409" mass="42288" checksum="1C71B28CFBCEF840" modified="2008-01-15" version="1">MSMRLNKRRGLPLAALVLAALAALAAGCGRNEAPAAAGDALPVVQAVTVQPAPLALSSELPGRIEPVRVAEVRARVAGIVLRRHFEEGADVRAGQVLFQIDPAPLRAALSRAQGQLASAEAALLDARAVVGRNAPLVAQEAVSRQDFEAMQARLQAAQAARQSAQAEVQAAALNLEYATVRAPIAGRIGRALVTEGALVGQGEATPMALVQQLDPVYADFQQPVAEAQRLRAALAEGRLAQTAGKDGTPVSLKVDGTGLQRTGRLMFSDVTVDRGTGQMALRGRFDNRDGMLLPGMYVRVTVGQGVDPAAILVPQRAVQRSTDGQAHVLVVDGQDTLQMRPVQTAAMHGAQWQISAGLKGGERVVVGRMAGLQPGARVQVTALSDAAASPTAGLSGTFSASGSSATSSD</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="66" xmlns="http://uniprot.org/uniprot">
    <accession>A9C145</accession>
    <name>A9C145_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Short-chain dehydrogenase/reductase SDR</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Daci_5880</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="2" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX38508.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012207677.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_5880"/>
    <dbReference type="PRIDE" id="A9C145"/>
    <dbReference type="EnsemblBacteria" id="ABX38508">
        <property type="protein sequence ID" value="ABX38508"/>
        <property type="gene ID" value="Daci_5880"/>
    </dbReference>
    <dbReference type="GeneID" id="60690243"/>
    <dbReference type="KEGG" id="dac:Daci_5880"/>
    <dbReference type="eggNOG" id="COG0300">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_010194_2_1_4"/>
    <dbReference type="OMA" id="NDFPMPM"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036291">
        <property type="entry name" value="NAD(P)-bd_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002347">
        <property type="entry name" value="SDR_fam"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00106">
        <property type="entry name" value="adh_short"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00081">
        <property type="entry name" value="GDHRDH"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51735">
        <property type="entry name" value="SSF51735"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ABX38508.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="263" mass="28155" checksum="95BCB5CD1B6E152A" modified="2008-01-15" version="1">MPLFSRGLNPLLADWKGRSAWVVGASSGIGRATAEALHRQGARVIVSARHGGALQDFVRGREGCLALPLDVTDAAAVDAAAQAVLAHAGGAPDLILYCAGHYRPLRATEFDLAEMQHHLAVNYGGVLHLLDAALPMLLKAGRGHLALVGSVAGYRGLPMSLAYGPTKAALNNLAENLYLDLHGLGLGVSIINPGFVDTPLTAQNSFSMPALIGADEAARHMLQGWAQGRFEMNFPRRFTRWVRLLRCLPDAWYFSAVRRFTGA</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="73" xmlns="http://uniprot.org/uniprot">
    <accession>A9C152</accession>
    <name>A9C152_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Transcriptional regulator, TetR family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Daci_5887</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="4" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX38515.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012207684.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_5887"/>
    <dbReference type="PRIDE" id="A9C152"/>
    <dbReference type="EnsemblBacteria" id="ABX38515">
        <property type="protein sequence ID" value="ABX38515"/>
        <property type="gene ID" value="Daci_5887"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_5887"/>
    <dbReference type="eggNOG" id="COG1309">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_069356_12_2_4"/>
    <dbReference type="OMA" id="KASLYKH"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009057">
        <property type="entry name" value="Homeobox-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001647">
        <property type="entry name" value="HTH_TetR"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00440">
        <property type="entry name" value="TetR_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00455">
        <property type="entry name" value="HTHTETR"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46689">
        <property type="entry name" value="SSF46689"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50977">
        <property type="entry name" value="HTH_TETR_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HTH tetR-type" evidence="2">
        <location>
            <begin position="13"/>
            <end position="73"/>
        </location>
    </feature>
    <feature type="DNA-binding region" description="H-T-H motif" evidence="1">
        <location>
            <begin position="36"/>
            <end position="55"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00335"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS50977"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ABX38515.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="212" mass="22720" checksum="2E8A19EE884A9732" modified="2008-01-15" version="1">MTSRSSIKEQIQRVREQAIVAAVNRLLATKGYDAMTVDEVAAEAGMAKASLYKLFTSKEELAGAAMVGVLDRALAFVDGLRDTAAQAAEAGTPVRPLDQLKAVTCWAMQTQLEGEMPSLPAQNSNLSASLQSNDAYMDRLIALSNRLSIWITEAQTSGQLQPALPAELVLYTLFARACDPVVALLKESGQYTHAQIIGWVTSTTFDGLARAG</sequence>
</entry>
<entry dataset="Swiss-Prot" created="2009-04-14" modified="2022-08-03" version="73" xmlns="http://uniprot.org/uniprot">
    <accession>A9C177</accession>
    <name>ERPA_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Putative iron-sulfur cluster insertion protein ErpA</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="1" type="primary">erpA</name>
        <name type="ordered locus">Daci_5912</name>
    </gene>
    <organism>
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference key="1">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain>DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="1">Required for insertion of 4Fe-4S clusters.</text>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>iron-sulfur cluster</name>
            <dbReference type="ChEBI" id="CHEBI:30408"/>
        </cofactor>
        <text evidence="1">Binds 1 iron-sulfur cluster per subunit.</text>
    </comment>
    <comment type="subunit">
        <text evidence="1">Homodimer.</text>
    </comment>
    <comment type="similarity">
        <text evidence="1">Belongs to the HesB/IscA family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX38540.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012207709.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A9C177"/>
    <dbReference type="SMR" id="A9C177"/>
    <dbReference type="STRING" id="398578.Daci_5912"/>
    <dbReference type="PRIDE" id="A9C177"/>
    <dbReference type="EnsemblBacteria" id="ABX38540">
        <property type="protein sequence ID" value="ABX38540"/>
        <property type="gene ID" value="Daci_5912"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_5912"/>
    <dbReference type="eggNOG" id="COG0316">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_069054_5_3_4"/>
    <dbReference type="OMA" id="YQLYFDE"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051537">
        <property type="term" value="F:2 iron, 2 sulfur cluster binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005506">
        <property type="term" value="F:iron ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016226">
        <property type="term" value="P:iron-sulfur cluster assembly"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.300.12">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01380">
        <property type="entry name" value="Fe_S_insert_ErpA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000361">
        <property type="entry name" value="FeS_biogenesis"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016092">
        <property type="entry name" value="FeS_cluster_insertion"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017870">
        <property type="entry name" value="FeS_cluster_insertion_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023063">
        <property type="entry name" value="FeS_cluster_insertion_RrpA"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035903">
        <property type="entry name" value="HesB-like_dom_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01521">
        <property type="entry name" value="Fe-S_biosyn"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF89360">
        <property type="entry name" value="SSF89360"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00049">
        <property type="entry name" value="TIGR00049"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01152">
        <property type="entry name" value="HESB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword id="KW-0408">Iron</keyword>
    <keyword id="KW-0411">Iron-sulfur</keyword>
    <keyword id="KW-0479">Metal-binding</keyword>
    <keyword id="KW-1185">Reference proteome</keyword>
    <feature type="chain" id="PRO_1000144905" description="Putative iron-sulfur cluster insertion protein ErpA">
        <location>
            <begin position="1"/>
            <end position="124"/>
        </location>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <position position="52"/>
        </location>
        <ligand>
            <name>iron-sulfur cluster</name>
            <dbReference type="ChEBI" id="CHEBI:30408"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <position position="116"/>
        </location>
        <ligand>
            <name>iron-sulfur cluster</name>
            <dbReference type="ChEBI" id="CHEBI:30408"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <position position="118"/>
        </location>
        <ligand>
            <name>iron-sulfur cluster</name>
            <dbReference type="ChEBI" id="CHEBI:30408"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000255" key="1">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01380"/>
        </source>
    </evidence>
    <sequence length="124" mass="13201" checksum="8A6E61FD5D15B276" modified="2008-01-15" version="1">MSAVAEITETTTTEMPTPIVFTDSAAAKVADLIAEEGNPDLKLRVFVQGGGCSGFQYGFTFDEITNDDDTTMTKNGVSLLIDAMSYQYLVGAEIDYKEDLQGAQFVIKNPNASTTCGCGSSFSV</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="76" xmlns="http://uniprot.org/uniprot">
    <accession>A9C1W1</accession>
    <name>A9C1W1_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Transcriptional regulator, MarR family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_2658</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX35296.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012204542.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_2658"/>
    <dbReference type="PRIDE" id="A9C1W1"/>
    <dbReference type="EnsemblBacteria" id="ABX35296">
        <property type="protein sequence ID" value="ABX35296"/>
        <property type="gene ID" value="Daci_2658"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_2658"/>
    <dbReference type="eggNOG" id="COG1846">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_083287_18_2_4"/>
    <dbReference type="OMA" id="HLTAHAW"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003700">
        <property type="term" value="F:DNA-binding transcription factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000835">
        <property type="entry name" value="HTH_MarR-typ"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036390">
        <property type="entry name" value="WH_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12802">
        <property type="entry name" value="MarR_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00598">
        <property type="entry name" value="HTHMARR"/>
    </dbReference>
    <dbReference type="SMART" id="SM00347">
        <property type="entry name" value="HTH_MARR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46785">
        <property type="entry name" value="SSF46785"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50995">
        <property type="entry name" value="HTH_MARR_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HTH marR-type" evidence="1">
        <location>
            <begin position="19"/>
            <end position="151"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS50995"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX35296.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="169" mass="18490" checksum="02FAF25B032F553F" modified="2008-01-15" version="1">MSSPSAPFPPKQPDPAAVQRHFMFTLGQVNKQWRRTLDRLLAPMGLTQALWMPLMHLARSPEAMRQKDLAHSLALDSSSVVRLVDGLAAQGWIERVDDSDRRVRKIQLTPAGHAQVEAVQGLLQQARAQVLGAVPPEELGAAYATLQRLLEAMAAEPACDTDLPDEQAA</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="58" xmlns="http://uniprot.org/uniprot">
    <accession>A9C1X5</accession>
    <name>A9C1X5_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Extracellular solute-binding protein family 5</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Daci_2973</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="4" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX35611.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_2973"/>
    <dbReference type="PRIDE" id="A9C1X5"/>
    <dbReference type="EnsemblBacteria" id="ABX35611">
        <property type="protein sequence ID" value="ABX35611"/>
        <property type="gene ID" value="Daci_2973"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_2973"/>
    <dbReference type="eggNOG" id="COG4166">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_023171_0_0_4"/>
    <dbReference type="OMA" id="VLPKHWW"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043190">
        <property type="term" value="C:ATP-binding cassette (ABC) transporter complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030288">
        <property type="term" value="C:outer membrane-bounded periplasmic space"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="GO" id="GO:0055085">
        <property type="term" value="P:transmembrane transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR030678">
        <property type="entry name" value="Peptide/Ni-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR039424">
        <property type="entry name" value="SBP_5"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000914">
        <property type="entry name" value="SBP_5_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30290">
        <property type="entry name" value="PTHR30290"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00496">
        <property type="entry name" value="SBP_bac_5"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF002741">
        <property type="entry name" value="MppA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="1">
        <location>
            <begin position="1"/>
            <end position="23"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5002736228" evidence="1">
        <location>
            <begin position="24"/>
            <end position="609"/>
        </location>
    </feature>
    <feature type="domain" description="SBP_bac_5" evidence="2">
        <location>
            <begin position="99"/>
            <end position="510"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF00496"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ABX35611.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="609" mass="68598" checksum="273AA739B72B6D4C" modified="2008-01-15" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-05-25" version="76" xmlns="http://uniprot.org/uniprot">
    <accession>A9C1Z6</accession>
    <name>A9C1Z6_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Transcriptional regulator, LysR family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Daci_2994</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="4" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the LysR transcriptional regulatory family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX35632.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012204838.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_2994"/>
    <dbReference type="EnsemblBacteria" id="ABX35632">
        <property type="protein sequence ID" value="ABX35632"/>
        <property type="gene ID" value="Daci_2994"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_2994"/>
    <dbReference type="eggNOG" id="COG0583">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_039613_6_4_4"/>
    <dbReference type="OMA" id="ERWICQP"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003700">
        <property type="term" value="F:DNA-binding transcription factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005119">
        <property type="entry name" value="LysR_subst-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000847">
        <property type="entry name" value="Tscrpt_reg_HTH_LysR"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036390">
        <property type="entry name" value="WH_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00126">
        <property type="entry name" value="HTH_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03466">
        <property type="entry name" value="LysR_substrate"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00039">
        <property type="entry name" value="HTHLYSR"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46785">
        <property type="entry name" value="SSF46785"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50931">
        <property type="entry name" value="HTH_LYSR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HTH lysR-type" evidence="2">
        <location>
            <begin position="1"/>
            <end position="58"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00009437"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS50931"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ABX35632.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="295" mass="31947" checksum="3060236215F11480" modified="2008-01-15" version="1">MDLRQLRHFVTLARTLNYRQAAEQLHMSQPPLSQSIRRLEDSLGVQLFQRDRRGTALTEAGLAALESAELALHHARQMQEVSRATAGGERGRLHIGFIGSATFSLIPRLVQAFRSEYPLIDLVLTESTTREICAQVASGDFDAGLLRYPVTQATDLSITPVEKDELVAVLPEGNPLLQRPALRLRDLADQPFINYRPSEVPGLHALVVLACQNAGFMPQVKQHAVQAQTLVSLVGAGLGVALVPAVVAKGSTPGVVFRALADTENLPSIGLALALNPQQSAAAGQRLRELLLQLQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="47" xmlns="http://uniprot.org/uniprot">
    <accession>A9C241</accession>
    <name>A9C241_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Daci_3039</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="2" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX35677.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012204883.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_3039"/>
    <dbReference type="PRIDE" id="A9C241"/>
    <dbReference type="EnsemblBacteria" id="ABX35677">
        <property type="protein sequence ID" value="ABX35677"/>
        <property type="gene ID" value="Daci_3039"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_3039"/>
    <dbReference type="eggNOG" id="ENOG502ZAGN">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_117549_0_0_4"/>
    <dbReference type="OMA" id="YYVGYFS"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR046239">
        <property type="entry name" value="DUF6272"/>
    </dbReference>
    <dbReference type="Pfam" id="PF19788">
        <property type="entry name" value="DUF6272"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ABX35677.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="193" mass="21345" checksum="09520E10198AEA77" modified="2008-01-15" version="1">MPPMPSAQIADKYGSFFHLARQHQVIFYYVGYFSQNIVAAMAEAVRLQLEVAGVPGPTRRKLFSSFVEMAQNIIHYSADALTPPHQDDGELRHGAVCIRREDDGSFVLLCANPIEPGMGEALRAKLDALRSMTLDEIKKACRQSLRDDAPEGSKGAGMGFLTLARDAREPLQFDFDPAQTVDGRPVFYLKATL</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="64" xmlns="http://uniprot.org/uniprot">
    <accession>A9C286</accession>
    <name>A9C286_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Ankyrin</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_3392</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX36030.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012205230.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_3392"/>
    <dbReference type="PRIDE" id="A9C286"/>
    <dbReference type="EnsemblBacteria" id="ABX36030">
        <property type="protein sequence ID" value="ABX36030"/>
        <property type="gene ID" value="Daci_3392"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_3392"/>
    <dbReference type="eggNOG" id="COG0666">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_000134_18_0_4"/>
    <dbReference type="OMA" id="QKILLCM"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.25.40.20">
        <property type="match status" value="3"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002110">
        <property type="entry name" value="Ankyrin_rpt"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036770">
        <property type="entry name" value="Ankyrin_rpt-contain_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12796">
        <property type="entry name" value="Ank_2"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR01415">
        <property type="entry name" value="ANKYRIN"/>
    </dbReference>
    <dbReference type="SMART" id="SM00248">
        <property type="entry name" value="ANK"/>
        <property type="match status" value="4"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48403">
        <property type="entry name" value="SSF48403"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50088">
        <property type="entry name" value="ANK_REPEAT"/>
        <property type="match status" value="3"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0040">ANK repeat</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="repeat" description="ANK" evidence="1">
        <location>
            <begin position="111"/>
            <end position="139"/>
        </location>
    </feature>
    <feature type="repeat" description="ANK" evidence="1">
        <location>
            <begin position="141"/>
            <end position="176"/>
        </location>
    </feature>
    <feature type="repeat" description="ANK" evidence="1">
        <location>
            <begin position="177"/>
            <end position="209"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00023"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX36030.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="247" mass="26785" checksum="701C7F2087178869" modified="2008-01-15" version="1">MRLNAAVGGRVGMGVDVHRRHWLAQAGQAVVALAAASGGLAHASQYDDYVRAIISDNERAMVNLIFRGFDPNTRDTRGRPGLVAALHQGSLGVFDVLLKSPGIKVNEASQQGETPLMMACIKGHLDLAKELIRRGADVNRPGWTPLHYATSADLPKTLDIVKLLLDNSAYIDADSPNGTTPLMLAAQYSSEAVVDLLIKEGADVVLRNQRGFTAADFARQVDRQYMVDKLTKAIKAERKTQPSRGSW</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-05-25" version="47" xmlns="http://uniprot.org/uniprot">
    <accession>A9C2F8</accession>
    <name>A9C2F8_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="4">IPTL-CTERM domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="5" type="ordered locus">Daci_3466</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="6" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX36102.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012205302.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="ABX36102">
        <property type="protein sequence ID" value="ABX36102"/>
        <property type="gene ID" value="Daci_3466"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_3466"/>
    <dbReference type="HOGENOM" id="CLU_758032_0_0_4"/>
    <dbReference type="OMA" id="GQHYQCQ"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR026442">
        <property type="entry name" value="IPTL_CTERM"/>
    </dbReference>
    <dbReference type="Pfam" id="PF18203">
        <property type="entry name" value="IPTL-CTERM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR04174">
        <property type="entry name" value="IPTL_CTERM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0472">Membrane</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0732">Signal</keyword>
    <keyword evidence="2" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="2" id="KW-1133">Transmembrane helix</keyword>
    <feature type="signal peptide" evidence="3">
        <location>
            <begin position="1"/>
            <end position="41"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5002732780" description="IPTL-CTERM domain-containing protein" evidence="3">
        <location>
            <begin position="42"/>
            <end position="365"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="341"/>
            <end position="359"/>
        </location>
    </feature>
    <feature type="domain" description="IPTL-CTERM" evidence="4">
        <location>
            <begin position="336"/>
            <end position="363"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="189"/>
            <end position="241"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="204"/>
            <end position="223"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="Pfam" id="PF18203"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="ABX36102.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="365" mass="32016" checksum="27CD7C3643453C1F" modified="2008-01-15" version="1">MRATTPNQQRWIRPWPEVRKGILNARVLAACAACLAPAAWAAPCVSGTVYTAAGGPQVCTVPAGITTMTVTLIGGGGGGVFSSSMVTGGNAAVGTGSLAVTPANNLLISVGGGGATGGPVGAGGGGSSSIIDTSALTVLAVAGGGGGAGRNDTAGVSGGNAGVGVGGGNGSNGTMGNAAHPGGAGGTVVGTGGAGGVGTDGTGGAGGSTGSRDGSTATGNDGGGSGSGVGPAGPGASGASAGSMGPGLGGGGAGGGGAGGYNAGGGGGGYGGGGGGGGNAGNAGDIGGAGGGGSSYGAGITFAAATSGAGMGGAGNSNGADGSVLITFAPPIASAQAIPALGEWSLLLLSGLLALVGVARTRRQH</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="58" xmlns="http://uniprot.org/uniprot">
    <accession>A9C2M7</accession>
    <name>A9C2M7_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="3">RND efflux system, outer membrane lipoprotein, NodT family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Daci_3744</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="4" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="2">Cell membrane</location>
            <topology evidence="2">Lipid-anchor</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="1 2">Belongs to the outer membrane factor (OMF) (TC 1.B.17) family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX36376.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012205570.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_3744"/>
    <dbReference type="PRIDE" id="A9C2M7"/>
    <dbReference type="EnsemblBacteria" id="ABX36376">
        <property type="protein sequence ID" value="ABX36376"/>
        <property type="gene ID" value="Daci_3744"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_3744"/>
    <dbReference type="eggNOG" id="COG1538">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_012817_13_2_4"/>
    <dbReference type="OMA" id="GCAPTIR"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015562">
        <property type="term" value="F:efflux transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003423">
        <property type="entry name" value="OMP_efflux"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010131">
        <property type="entry name" value="RND_efflux_OM_lipoprot_NodT"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02321">
        <property type="entry name" value="OEP"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01845">
        <property type="entry name" value="outer_NodT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2 3" id="KW-0449">Lipoprotein</keyword>
    <keyword evidence="2" id="KW-0472">Membrane</keyword>
    <keyword evidence="2" id="KW-0564">Palmitate</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0732">Signal</keyword>
    <keyword evidence="2" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="2" id="KW-1134">Transmembrane beta strand</keyword>
    <feature type="signal peptide" evidence="2">
        <location>
            <begin position="1"/>
            <end position="29"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5001436695" evidence="2">
        <location>
            <begin position="30"/>
            <end position="491"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00007613"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="RuleBase" id="RU362097"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ABX36376.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="491" mass="51594" checksum="4B7A6FD9A3B29C47" modified="2008-01-15" version="1">MPKSFVSVSAAPRRVAAAAATLCAALALAGCASQGPAHEPLARLGASDLGLTAQSETGSNTSLPAADWWKSLGDAQLDALIAQALQGSPSLAMSRARFDKAAALATATSTATDVRGTLGVDATRQHYSANGLVPAPIAGHTYNTGNLQAGLSWTPDFFGRHAADLQAALGQARAAQADSAAAANQLAAQVARSYVALARLIAQKDVAGRTLTQRQSLLDLSQQRTRAGLDSQVELTQAQAGLPDAGTQIEMLDEQITLARRTIAVLCGQAPEAQLQLSPRLAALQIQAVPGQLGADLLGRRPDVVAARWRVESATQGIESARADFYPDINLTAFIGLNAIGLDNLFKGSSRQMGITPALRLPLFDGKRLRAQLRGTQADLDTAIAQYNGVVLDAVKEAGDAITSVQSLVRQQQLQAESLEKAERAYDFAVQRYKAGLASQVTVLNTETQVITQRRLDVDLRARALDTRVSLMKALGGGWTDGTAAVQVSQH</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="79" xmlns="http://uniprot.org/uniprot">
    <accession>A9C3B0</accession>
    <name>A9C3B0_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Transcriptional regulator, LysR family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Daci_4592</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="4" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the LysR transcriptional regulatory family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX37221.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012206391.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_4592"/>
    <dbReference type="PRIDE" id="A9C3B0"/>
    <dbReference type="EnsemblBacteria" id="ABX37221">
        <property type="protein sequence ID" value="ABX37221"/>
        <property type="gene ID" value="Daci_4592"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_4592"/>
    <dbReference type="eggNOG" id="COG0583">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_039613_16_2_4"/>
    <dbReference type="OMA" id="PRYVADD"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003700">
        <property type="term" value="F:DNA-binding transcription factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005119">
        <property type="entry name" value="LysR_subst-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000847">
        <property type="entry name" value="Tscrpt_reg_HTH_LysR"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036390">
        <property type="entry name" value="WH_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00126">
        <property type="entry name" value="HTH_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03466">
        <property type="entry name" value="LysR_substrate"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46785">
        <property type="entry name" value="SSF46785"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50931">
        <property type="entry name" value="HTH_LYSR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HTH lysR-type" evidence="2">
        <location>
            <begin position="2"/>
            <end position="59"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00009437"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS50931"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ABX37221.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="309" mass="34059" checksum="1E5B20E53DB4B316" modified="2008-01-15" version="1">MMDLNDMLYFAEVVERGGFASAGRALGIPKSRLSRRVAELEARLGVRLLQRTTRKLSLTQVGEAYLRHCQAMRDAALAAADTVAEVQTEPRGTIRVSCPVTLAQTVLGELMPQFLQRCPLVHVEMQVTNRPVNLVEEGIDVALRVRPSLEDSGSMVVKRLDVARQILVASPELLERQGTPRALADLQHLDSMSMSAVDGQSSLLLVGPEGREQRLQLQPRYVVDDLLTLKFAALAGSGMCWLPDYMCHEELAEGRLVHLLPGWEPPQGIVHAVFPSRRGLAPAVRHFLDFLGETVPGRNSHATREPAAR</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="62" xmlns="http://uniprot.org/uniprot">
    <accession>A9C3C3</accession>
    <name>A9C3C3_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="4">Lipoprotein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="6" type="ordered locus">Daci_4605</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="7" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Lipid-anchor</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="4">Belongs to the nlpA lipoprotein family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX37234.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012206404.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_4605"/>
    <dbReference type="PRIDE" id="A9C3C3"/>
    <dbReference type="EnsemblBacteria" id="ABX37234">
        <property type="protein sequence ID" value="ABX37234"/>
        <property type="gene ID" value="Daci_4605"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_4605"/>
    <dbReference type="eggNOG" id="COG1464">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_067080_0_0_4"/>
    <dbReference type="OMA" id="YQDDAES"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016020">
        <property type="term" value="C:membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004872">
        <property type="entry name" value="Lipoprotein_NlpA"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006311">
        <property type="entry name" value="TAT_signal"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30429">
        <property type="entry name" value="PTHR30429"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03180">
        <property type="entry name" value="Lipoprotein_9"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF002854">
        <property type="entry name" value="MetQ"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00363">
        <property type="entry name" value="TIGR00363"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51318">
        <property type="entry name" value="TAT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4 6" id="KW-0449">Lipoprotein</keyword>
    <keyword evidence="3" id="KW-0472">Membrane</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 5" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="5">
        <location>
            <begin position="1"/>
            <end position="32"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5002732801" description="Lipoprotein" evidence="5">
        <location>
            <begin position="33"/>
            <end position="272"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004635"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022729"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="PIRNR" id="PIRNR002854"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="ABX37234.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="272" mass="29532" checksum="521E2A1F36E5F1C6" modified="2008-01-15" version="1">MPTKRHFLRRTLTAAAIASTAAMTLLAMPAQAQDKPIKVGVTAGPHAQIMEQVKKVAEKNGLKIQIVEFGDYVQPNAALSAGDLDANSYQHRPYLDAQVRDRGYKIGWVADTVNFPIGIYSKKIKQLADLPQGAKFGIPNDPTNGGRVLLLLQAQGLIKLKESAGLKATPLDVVSNPKKLRFVELDAAQLPRSLDDLDASAINTNFAISAGLNPKTDAIAQENAKNPYVNILVARDADKGKPWVAQLIKAYHSDEVRQFIDVQFKGSVIPAF</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-01-19" version="40" xmlns="http://uniprot.org/uniprot">
    <accession>A9C3E8</accession>
    <name>A9C3E8_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_4630</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX37259.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012206429.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_4630"/>
    <dbReference type="EnsemblBacteria" id="ABX37259">
        <property type="protein sequence ID" value="ABX37259"/>
        <property type="gene ID" value="Daci_4630"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_4630"/>
    <dbReference type="eggNOG" id="ENOG5033CIE">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_2232180_0_0_4"/>
    <dbReference type="OMA" id="QQVIYRS"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="1">
        <location>
            <begin position="1"/>
            <end position="24"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5002735346" evidence="1">
        <location>
            <begin position="25"/>
            <end position="105"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX37259.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="105" mass="11735" checksum="44C549A86D6A232A" modified="2008-01-15" version="1">MTAVQNLRAITVLAGCALAQAASAACYSVYTPEQELIYRSNRPPVDLTLPLHQTVDKIERGATMVFTLDEFNCITEINLLAEREQLARARQERQRDLGRSSTPRS</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="53" xmlns="http://uniprot.org/uniprot">
    <accession>A9C3G4</accession>
    <name>A9C3G4_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_4646</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX37275.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012206445.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_4646"/>
    <dbReference type="PRIDE" id="A9C3G4"/>
    <dbReference type="EnsemblBacteria" id="ABX37275">
        <property type="protein sequence ID" value="ABX37275"/>
        <property type="gene ID" value="Daci_4646"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_4646"/>
    <dbReference type="eggNOG" id="COG2998">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_851628_0_0_4"/>
    <dbReference type="OMA" id="YAVVGHI"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006311">
        <property type="entry name" value="TAT_signal"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51318">
        <property type="entry name" value="TAT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="1">
        <location>
            <begin position="1"/>
            <end position="31"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5002732805" evidence="1">
        <location>
            <begin position="32"/>
            <end position="291"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX37275.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="291" mass="30620" checksum="7B64751EED08A6D9" modified="2008-01-15" version="1">MEPLYPDRRRLLGALPALAALSGCASLPAEAVSVDVAVVGGLSLCGVWPRLADAAGRSLGLSVRTAVAAPKEGVIPAMAQGRAQLLLIHASDEAMSLEAAGLASAARVWGWNEHVFAGPSHDPARVRGAADGVEAMRRIVASGSPFIALRDPGSYTVVQRLWRRAGIRPDARWLRADTGPRPQAVLQLAAELQAYAVVGHIPLHFGKMGAPGIELLLHGDPLMRRPYVLLTPGPRHPADAGQRRSAQRLAEHLLSAPGQHELALANAAAGGPWIFERDSMPLVNDTGGGQE</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="78" xmlns="http://uniprot.org/uniprot">
    <accession>A9C3G8</accession>
    <name>A9C3G8_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="8">ABC transporter related</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="8" type="ordered locus">Daci_4650</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="9" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX37279.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_4650"/>
    <dbReference type="EnsemblBacteria" id="ABX37279">
        <property type="protein sequence ID" value="ABX37279"/>
        <property type="gene ID" value="Daci_4650"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_4650"/>
    <dbReference type="eggNOG" id="COG1120">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_000604_1_11_4"/>
    <dbReference type="OMA" id="HEFTWDF"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003593">
        <property type="entry name" value="AAA+_ATPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003439">
        <property type="entry name" value="ABC_transporter-like_ATP-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017871">
        <property type="entry name" value="ABC_transporter-like_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00005">
        <property type="entry name" value="ABC_tran"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00382">
        <property type="entry name" value="AAA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00211">
        <property type="entry name" value="ABC_TRANSPORTER_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50893">
        <property type="entry name" value="ABC_TRANSPORTER_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3 6" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="1" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="5" id="KW-0472">Membrane</keyword>
    <keyword evidence="2 6" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4" id="KW-1278">Translocase</keyword>
    <feature type="domain" description="ABC transporter" evidence="7">
        <location>
            <begin position="7"/>
            <end position="242"/>
        </location>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <begin position="39"/>
            <end position="46"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022967"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00434"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="PROSITE" id="PS50893"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="ABX37279.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="261" mass="27223" checksum="AD8842BF32C7B4C8" modified="2008-01-15" version="1">MPTAPVLQTLALATGHGRRHVSQGLDLAITAGEVLCLLGPNGCGKTTLFRTVLGLLAPLAGEVRVQGQPVHSWPRAEFARRVGYVPQAQAGVFGFEALDMVLMGRAARLPALARPSSADRALALGCLEQLGIAHLALRPYTELSGGERQLVLIARALAQEPALLVMDEPTASLDFGNQIRVLDQIAALRARGMAVLLSTHQPEHALQVADRIALLGRGGLQACGAAAQVATPAALAALYGVSEAAVAARLPADLDRRRGGI</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="72" xmlns="http://uniprot.org/uniprot">
    <accession>A9C3H0</accession>
    <name>A9C3H0_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="6">Nitrite/sulfite reductase hemoprotein beta-component ferrodoxin domain protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ordered locus">Daci_4652</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="7" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX37281.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_4652"/>
    <dbReference type="PRIDE" id="A9C3H0"/>
    <dbReference type="EnsemblBacteria" id="ABX37281">
        <property type="protein sequence ID" value="ABX37281"/>
        <property type="gene ID" value="Daci_4652"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_4652"/>
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    </dbReference>
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        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
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        <property type="project" value="InterPro"/>
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        <property type="project" value="UniProtKB-KW"/>
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    </dbReference>
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    </dbReference>
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            <end position="457"/>
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        <location>
            <begin position="472"/>
            <end position="612"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022485"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023004"/>
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    </evidence>
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        <source>
            <dbReference type="ARBA" id="ARBA00023014"/>
        </source>
    </evidence>
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    </evidence>
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            <dbReference type="Pfam" id="PF03460"/>
        </source>
    </evidence>
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        <source>
            <dbReference type="EMBL" id="ABX37281.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="629" mass="69967" checksum="E26C91D111C4A474" modified="2008-01-15" version="1"> </sequence>
</entry>
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        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
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            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
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    </dbReference>
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        </location>
    </feature>
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        <location>
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            <end position="201"/>
        </location>
    </feature>
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        <location>
            <begin position="38"/>
            <end position="67"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="38"/>
            <end position="62"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ABX36493.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="201" mass="22311" checksum="F910C991710B7A32" modified="2008-01-15" version="1">MSPTHTGSSTLKPYRHFPMASLAIAIAVSACLMGAQASESSQPPASPAEISSQQTQPTAADYSRPAQERVASMTALRQYLKFKDEVWETQRARQSNTFCFVQQRPDHPSDPEPNVWMVWLNGGEIVNMGWHLYSPKTLTKEDAKADGESLARMKSIKLATDVRETAQEIYGSSFLVERAWVNRLLAQCKAKGRTIKVAPAR</sequence>
</entry>
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    <accession>A9BLP3</accession>
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            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
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            <authorList>
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                <person name="Lucas S."/>
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                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
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        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
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    <dbReference type="EnsemblBacteria" id="ABX36528">
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        <property type="gene ID" value="Daci_3897"/>
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    </dbReference>
    <proteinExistence type="predicted"/>
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    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
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        <location>
            <begin position="311"/>
            <end position="368"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX36528.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="814" mass="87372" checksum="19525B435B062FF9" modified="2008-01-15" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="62" xmlns="http://uniprot.org/uniprot">
    <accession>A9BLQ2</accession>
    <name>A9BLQ2_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Transcriptional regulator, XRE family</fullName>
        </submittedName>
    </protein>
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    <organism evidence="3 4">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
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        <lineage>
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    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
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                <person name="Fischer K."/>
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            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="4" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX36841.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_4210"/>
    <dbReference type="PRIDE" id="A9BLQ2"/>
    <dbReference type="EnsemblBacteria" id="ABX36841">
        <property type="protein sequence ID" value="ABX36841"/>
        <property type="gene ID" value="Daci_4210"/>
    </dbReference>
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    <dbReference type="eggNOG" id="COG1396">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
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        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd00093">
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        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.260.40">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001387">
        <property type="entry name" value="Cro/C1-type_HTH"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010982">
        <property type="entry name" value="Lambda_DNA-bd_dom_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01381">
        <property type="entry name" value="HTH_3"/>
        <property type="match status" value="1"/>
    </dbReference>
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        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47413">
        <property type="entry name" value="SSF47413"/>
        <property type="match status" value="1"/>
    </dbReference>
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        <property type="entry name" value="HTH_CROC1"/>
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    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HTH cro/C1-type" evidence="2">
        <location>
            <begin position="34"/>
            <end position="88"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="21"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS50943"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ABX36841.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="106" mass="11157" checksum="36D14D2472469219" modified="2008-01-15" version="1">MTLLSMQKLTIQPGRPPGTPTYESEPALAFGRAVRAARVAQGVAQDDFAFQAGISRSHMGKIERGEHVPTLPLILKIATALGISASELMAATEKNLNSGSELQGSP</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="80" xmlns="http://uniprot.org/uniprot">
    <accession>A9BLT8</accession>
    <name>A9BLT8_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="10">Molydopterin dinucleotide-binding region</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="10" type="ordered locus">Daci_4246</name>
    </gene>
    <organism evidence="10 11">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
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        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
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        </lineage>
    </organism>
    <reference evidence="10 11" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
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                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
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            <strain evidence="11">DSM 14801 / SPH-1</strain>
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        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
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                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
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        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
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            <strain evidence="11">DSM 14801 / SPH-1</strain>
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    </reference>
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</entry>
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                <person name="Fischer K."/>
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        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
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                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
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        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
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        </source>
    </reference>
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        </location>
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    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF00248"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX37423.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="358" mass="39199" checksum="F5F00000327B1D63" modified="2008-01-15" version="1">MNSPSMQPVALGQSALQVSPICLGTMTFGEQVGEAEAFAIMDRALERGVDFFDTAEMYAVPARAETCGATETIIGRWFAQRPGARAKVVLATKVAGPSRGMPWVREGKGMTAADIAASCEGSLRRLGTDVIDLYQIHWPERNVPAFGQLYYDPAKESSQTGIHEQLEALGRLVREGKVRHIGLSNETPWGVHEFVRLAEQHGLPRVASVQNAYCLLNRSWENGMDESCHRLGVSLLAYSPLAFGLLTGKFDVHAPTDPAAPQAARIARYESVRKQRWGRPEALAAARRYSALAREHGLTPTQLALAFCYTKWQVASTIIGVTSVAQLDEDLNAWGTQLSPELLSAIDAIRWEVRDPAQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="80" xmlns="http://uniprot.org/uniprot">
    <accession>A9BMA3</accession>
    <name>A9BMA3_DELAS</name>
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        <submittedName>
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    </protein>
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    <organism evidence="8 9">
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    <reference evidence="8 9" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
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            <dbReference type="PubMed" id="15240283"/>
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        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="9" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
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                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX37448.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012206618.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_4819"/>
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    <dbReference type="EnsemblBacteria" id="ABX37448">
        <property type="protein sequence ID" value="ABX37448"/>
        <property type="gene ID" value="Daci_4819"/>
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    <dbReference type="HOGENOM" id="CLU_000604_1_2_4"/>
    <dbReference type="OMA" id="AMARIMV"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
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        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
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        <property type="match status" value="1"/>
    </dbReference>
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    </dbReference>
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        <property type="entry name" value="ABC_transporter-like_ATP-bd"/>
    </dbReference>
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    </dbReference>
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        <property type="entry name" value="AAA"/>
        <property type="match status" value="1"/>
    </dbReference>
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        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
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        <property type="entry name" value="ABC_TRANSPORTER_2"/>
        <property type="match status" value="1"/>
    </dbReference>
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    <keyword evidence="2 6" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4" id="KW-1278">Translocase</keyword>
    <feature type="domain" description="ABC transporter" evidence="7">
        <location>
            <begin position="5"/>
            <end position="241"/>
        </location>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <begin position="37"/>
            <end position="44"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022967"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00434"/>
        </source>
    </evidence>
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        <source>
            <dbReference type="PROSITE" id="PS50893"/>
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    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="ABX37448.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="241" mass="26317" checksum="9A9FF6C8CBE77490" modified="2008-01-15" version="1">MPALLEIRGLHAAYGSVRVLDGIDMDLAEGRVTALLGANGAGKTTTLRAICRHLVDTRGEVRLAGERIDRHSTERIARQGVGHVPDGRGTFAQLSAEDNLRLGAQARPTRAARADVGGDMERMFGYFPRLRERRTQQAGTLSGGEQQMLAIARALMGRPRLLLLDEPSFGLAPLVVRDIFGILRRINAEQGTTILLVEQNARLALELAHSAYLLETGRIVLHGPSEAMRRNDAVRQAYLGE</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="90" xmlns="http://uniprot.org/uniprot">
    <accession>A9BMX1</accession>
    <name>A9BMX1_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="2 3">Methionine aminopeptidase</fullName>
            <shortName evidence="2">MAP</shortName>
            <shortName evidence="2">MetAP</shortName>
            <ecNumber evidence="2 3">3.4.11.18</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="2">Peptidase M</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="2" type="primary">map</name>
        <name evidence="5" type="ordered locus">Daci_5037</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="6" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="1 2">Removes the N-terminal methionine from nascent proteins. The N-terminal methionine is often cleaved when the second residue in the primary sequence is small and uncharged (Met-Ala-, Cys, Gly, Pro, Ser, Thr, or Val). Requires deformylation of the N(alpha)-formylated initiator methionine before it can be hydrolyzed.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="2 3">
            <text>Release of N-terminal amino acids, preferentially methionine, from peptides and arylamides.</text>
            <dbReference type="EC" id="3.4.11.18"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="2 3">
            <name>Co(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:48828"/>
        </cofactor>
        <cofactor evidence="2 3">
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </cofactor>
        <cofactor evidence="2 3">
            <name>Mn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29035"/>
        </cofactor>
        <cofactor evidence="2 3">
            <name>Fe(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29033"/>
        </cofactor>
        <text evidence="2 3">Binds 2 divalent metal cations per subunit. Has a high-affinity and a low affinity metal-binding site. The true nature of the physiological cofactor is under debate. The enzyme is active with cobalt, zinc, manganese or divalent iron ions. Most likely, methionine aminopeptidases function as mononuclear Fe(2+)-metalloproteases under physiological conditions, and the catalytically relevant metal-binding site has been assigned to the histidine-containing high-affinity site.</text>
    </comment>
    <comment type="subunit">
        <text evidence="2">Monomer.</text>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the peptidase M24A family. Methionine aminopeptidase type 1 subfamily.</text>
    </comment>
    <dbReference type="EC" id="3.4.11.18" evidence="2 3"/>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX37666.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012206836.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_5037"/>
    <dbReference type="MEROPS" id="M24.001"/>
    <dbReference type="PRIDE" id="A9BMX1"/>
    <dbReference type="EnsemblBacteria" id="ABX37666">
        <property type="protein sequence ID" value="ABX37666"/>
        <property type="gene ID" value="Daci_5037"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_5037"/>
    <dbReference type="eggNOG" id="COG0024">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_015857_0_1_4"/>
    <dbReference type="OMA" id="SKMYVMP"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0070006">
        <property type="term" value="F:metalloaminopeptidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046914">
        <property type="term" value="F:transition metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="GO" id="GO:0070084">
        <property type="term" value="P:protein initiator methionine removal"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006508">
        <property type="term" value="P:proteolysis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd01086">
        <property type="entry name" value="MetAP1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.230.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01974">
        <property type="entry name" value="MetAP_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036005">
        <property type="entry name" value="Creatinase/aminopeptidase-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000994">
        <property type="entry name" value="Pept_M24"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001714">
        <property type="entry name" value="Pept_M24_MAP"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002467">
        <property type="entry name" value="Pept_M24A_MAP1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00557">
        <property type="entry name" value="Peptidase_M24"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00599">
        <property type="entry name" value="MAPEPTIDASE"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55920">
        <property type="entry name" value="SSF55920"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00500">
        <property type="entry name" value="met_pdase_I"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00680">
        <property type="entry name" value="MAP_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2 3 5" id="KW-0031">Aminopeptidase</keyword>
    <keyword evidence="2" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="2 3" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="2 3" id="KW-0645">Protease</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Peptidase_M24" evidence="4">
        <location>
            <begin position="21"/>
            <end position="249"/>
        </location>
    </feature>
    <feature type="binding site" evidence="2">
        <location>
            <position position="85"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="2">
        <location>
            <position position="103"/>
        </location>
        <ligand>
            <name>a divalent metal cation</name>
            <dbReference type="ChEBI" id="CHEBI:60240"/>
            <label>1</label>
        </ligand>
    </feature>
    <feature type="binding site" evidence="2">
        <location>
            <position position="115"/>
        </location>
    </feature>
    <feature type="binding site" evidence="2">
        <location>
            <position position="178"/>
        </location>
        <ligand>
            <name>a divalent metal cation</name>
            <dbReference type="ChEBI" id="CHEBI:60240"/>
            <label>2</label>
            <note>catalytic</note>
        </ligand>
    </feature>
    <feature type="binding site" evidence="2">
        <location>
            <position position="185"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="2">
        <location>
            <position position="211"/>
        </location>
        <ligand>
            <name>a divalent metal cation</name>
            <dbReference type="ChEBI" id="CHEBI:60240"/>
            <label>2</label>
            <note>catalytic</note>
        </ligand>
    </feature>
    <feature type="binding site" evidence="2">
        <location>
            <position position="242"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00002521"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01974"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="RuleBase" id="RU003653"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="Pfam" id="PF00557"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="ABX37666.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="268" mass="29213" checksum="5AAA41C674BD2840" modified="2008-01-15" version="1">MRGAKLRSVPLHDALDIGQSRKAGGLAARVLQMLVPHVQPGVSTEHLDKLCHDFIVDELRCVPTNVGYHGFPKSVCTSPNHVVCHGIPDARQILREGDILNVDVAVTTPEGWIGDTSRMYYVGQPSNQARRLVETTYEALLAGIRAVRPGATLGDIGHAIQTVAQRERFSVVREYCGHGIGKVYHDDPQVLHYGQPGQGMVLEAGMIFTIEPMLNAGKAATRELADGWTVITNDKSLSAQWEHMVVVTDTGFDVLTRWPEGTGSYAAI</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="58" xmlns="http://uniprot.org/uniprot">
    <accession>A9BN96</accession>
    <name>A9BN96_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Putative substrate-binding periplasmic (Pbp) ABC transporter protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Daci_5162</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="4" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX37791.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012206961.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_5162"/>
    <dbReference type="PRIDE" id="A9BN96"/>
    <dbReference type="EnsemblBacteria" id="ABX37791">
        <property type="protein sequence ID" value="ABX37791"/>
        <property type="gene ID" value="Daci_5162"/>
    </dbReference>
    <dbReference type="GeneID" id="60689512"/>
    <dbReference type="KEGG" id="dac:Daci_5162"/>
    <dbReference type="eggNOG" id="COG0683">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_027128_1_0_4"/>
    <dbReference type="OMA" id="DIQAADY"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR028081">
        <property type="entry name" value="Leu-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR028082">
        <property type="entry name" value="Peripla_BP_I"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13458">
        <property type="entry name" value="Peripla_BP_6"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53822">
        <property type="entry name" value="SSF53822"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="1">
        <location>
            <begin position="1"/>
            <end position="24"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5002732935" evidence="1">
        <location>
            <begin position="25"/>
            <end position="398"/>
        </location>
    </feature>
    <feature type="domain" description="Peripla_BP_6" evidence="2">
        <location>
            <begin position="27"/>
            <end position="362"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF13458"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ABX37791.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="398" mass="42766" checksum="89B95B7C14E3E95C" modified="2008-01-15" version="1">MKAKLTALSCMLAAAGLASPLAMAQEKVKIGFVTDMSSLYADVEGKNAVTAMQMAIDDFGGKVLGQPIELLSADHQNKADIAASKVREWVDTQGISLVFSGTNSGTALAVSQVANEKKRVHFNSGAGSSALTNEQCNAYTVHYAYDTVALAKGTGTAVVERGGKDWFFLTADYAFGHALENDTTAVIKAKGGKVVGGVKHPLNASDFSSFLLQAQASKAQILGLANAGGDTINAIKAAKEFGINKSMKTVGLLVFLTDIHSLGLKNTEGMQFTTSWYWDQNDATRKFGERFFAKTKRMPTSIQAADYSAVTSYLKAVQAVKSTDADKVMAYLKSTPIDDFYGKGSIRPDGTFAHDMYLVEVKKPAESKKPWDYLKVVATLPADQVWTTKAETKCALWK</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="76" xmlns="http://uniprot.org/uniprot">
    <accession>A9BNA7</accession>
    <name>A9BNA7_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="6">NADH-quinone oxidoreductase subunit H</fullName>
            <ecNumber evidence="6">7.1.1.-</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="6">NADH dehydrogenase I subunit H</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="6">NDH-1 subunit H</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="6" type="primary">nuoH</name>
        <name evidence="8" type="ordered locus">Daci_5173</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="9" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="6">NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient. This subunit may bind ubiquinone.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="6">
            <text>a quinone + 5 H(+)(in) + NADH = a quinol + 4 H(+)(out) + NAD(+)</text>
            <dbReference type="Rhea" id="RHEA:57888"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:24646"/>
            <dbReference type="ChEBI" id="CHEBI:57540"/>
            <dbReference type="ChEBI" id="CHEBI:57945"/>
            <dbReference type="ChEBI" id="CHEBI:132124"/>
        </reaction>
    </comment>
    <comment type="subunit">
        <text evidence="6">NDH-1 is composed of 14 different subunits. Subunits NuoA, H, J, K, L, M, N constitute the membrane sector of the complex.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="6">Cell inner membrane</location>
            <topology evidence="6">Multi-pass membrane protein</topology>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="7">Cell membrane</location>
            <topology evidence="7">Multi-pass membrane protein</topology>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="6 7">Belongs to the complex I subunit 1 family.</text>
    </comment>
    <dbReference type="EC" id="7.1.1.-" evidence="6"/>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX37802.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012206972.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_5173"/>
    <dbReference type="PRIDE" id="A9BNA7"/>
    <dbReference type="EnsemblBacteria" id="ABX37802">
        <property type="protein sequence ID" value="ABX37802"/>
        <property type="gene ID" value="Daci_5173"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_5173"/>
    <dbReference type="eggNOG" id="COG1005">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_015134_0_1_4"/>
    <dbReference type="OMA" id="WSGWASN"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016655">
        <property type="term" value="F:oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0048038">
        <property type="term" value="F:quinone binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01350">
        <property type="entry name" value="NDH1_NuoH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001694">
        <property type="entry name" value="NADH_UbQ_OxRdtase_su1/FPO"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018086">
        <property type="entry name" value="NADH_UbQ_OxRdtase_su1_CS"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11432">
        <property type="entry name" value="PTHR11432"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00146">
        <property type="entry name" value="NADHdh"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00667">
        <property type="entry name" value="COMPLEX1_ND1_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00668">
        <property type="entry name" value="COMPLEX1_ND1_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="6" id="KW-0997">Cell inner membrane</keyword>
    <keyword evidence="6" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="5 6" id="KW-0472">Membrane</keyword>
    <keyword evidence="6 7" id="KW-0520">NAD</keyword>
    <keyword evidence="8" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="3 6" id="KW-0874">Quinone</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="6" id="KW-1278">Translocase</keyword>
    <keyword evidence="2 6 7" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="4 6" id="KW-1133">Transmembrane helix</keyword>
    <keyword evidence="6" id="KW-0830">Ubiquinone</keyword>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="25"/>
            <end position="48"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="96"/>
            <end position="117"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="129"/>
            <end position="151"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="172"/>
            <end position="191"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="211"/>
            <end position="230"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="259"/>
            <end position="286"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="298"/>
            <end position="318"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="330"/>
            <end position="350"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022719"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01350"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="RuleBase" id="RU000471"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="ABX37802.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="358" mass="39349" checksum="C940DECF0A9C6D77" modified="2008-01-15" version="1">MIDALKTAGAGLIAAPWWTDVAWPVLWILLGIVAIVAPLMGAVAYLTLWERKLLGFMQVRMGPNRVGPFGLLQPLADGLKLLTKELIQPTAAAKGLFYVGPVMAIMPALAAWVAIPFGPDVALANVNAGLLLIMAITSIEVYGVIIAGWASNSKYAFLGALRASAQMVSYEIALGFCFLVVIMVTGSMNLTQIVLSQGQGQFASMGASVLSWNWLPLLPIFVVYLISAVAETNRHPFDVVEGEAEIVAGHMVEYSGMGFAIFFLAEYASMWLVSILAVVMFLGGWLPPFDFLSFIPGWIWLAAKTFLVVSMFIWIRATFPRFRYDQIMRLGWKIFIPVTLVWLVVVGGWMHSPWNIWN</sequence>
</entry>
<entry dataset="Swiss-Prot" created="2009-04-14" modified="2022-08-03" version="71" xmlns="http://uniprot.org/uniprot">
    <accession>A9BNG3</accession>
    <name>RS6_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">30S ribosomal protein S6</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="1" type="primary">rpsF</name>
        <name type="ordered locus">Daci_5229</name>
    </gene>
    <organism>
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference key="1">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain>DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="1">Binds together with S18 to 16S ribosomal RNA.</text>
    </comment>
    <comment type="similarity">
        <text evidence="1">Belongs to the bacterial ribosomal protein bS6 family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX37858.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012207028.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A9BNG3"/>
    <dbReference type="SMR" id="A9BNG3"/>
    <dbReference type="STRING" id="398578.Daci_5229"/>
    <dbReference type="PRIDE" id="A9BNG3"/>
    <dbReference type="EnsemblBacteria" id="ABX37858">
        <property type="protein sequence ID" value="ABX37858"/>
        <property type="gene ID" value="Daci_5229"/>
    </dbReference>
    <dbReference type="GeneID" id="60689574"/>
    <dbReference type="KEGG" id="dac:Daci_5229"/>
    <dbReference type="eggNOG" id="COG0360">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_113441_6_1_4"/>
    <dbReference type="OMA" id="ITEASPM"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005840">
        <property type="term" value="C:ribosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0019843">
        <property type="term" value="F:rRNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003735">
        <property type="term" value="F:structural constituent of ribosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006412">
        <property type="term" value="P:translation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd00473">
        <property type="entry name" value="bS6"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.70.60">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00360">
        <property type="entry name" value="Ribosomal_S6"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000529">
        <property type="entry name" value="Ribosomal_S6"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020815">
        <property type="entry name" value="Ribosomal_S6_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020814">
        <property type="entry name" value="Ribosomal_S6_plastid/chlpt"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035980">
        <property type="entry name" value="Ribosomal_S6_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014717">
        <property type="entry name" value="Transl_elong_EF1B/ribosomal_S6"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR21011">
        <property type="entry name" value="PTHR21011"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01250">
        <property type="entry name" value="Ribosomal_S6"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54995">
        <property type="entry name" value="SSF54995"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00166">
        <property type="entry name" value="S6"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01048">
        <property type="entry name" value="RIBOSOMAL_S6"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword id="KW-1185">Reference proteome</keyword>
    <keyword id="KW-0687">Ribonucleoprotein</keyword>
    <keyword id="KW-0689">Ribosomal protein</keyword>
    <keyword id="KW-0694">RNA-binding</keyword>
    <keyword id="KW-0699">rRNA-binding</keyword>
    <feature type="chain" id="PRO_1000120736" description="30S ribosomal protein S6">
        <location>
            <begin position="1"/>
            <end position="120"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="93"/>
            <end position="120"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="2">
        <location>
            <begin position="103"/>
            <end position="120"/>
        </location>
    </feature>
    <evidence type="ECO:0000255" key="1">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00360"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <sequence length="120" mass="13779" checksum="BA06F39049CD639E" modified="2008-01-15" version="1">MRHYEIVLLIHPDQSEQVPAMLERYKGMITAGGGKVHREEDWGRRQLAYMINKLAKAHYLCLNIEADQAVMAELEHAFKFNDAVLRHLTVQKKKADTAPSSMMKTVEREEARKASQTEQA</sequence>
</entry>
<entry dataset="Swiss-Prot" created="2009-04-14" modified="2022-08-03" version="80" xmlns="http://uniprot.org/uniprot">
    <accession>A9BNL9</accession>
    <name>QUEF_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">NADPH-dependent 7-cyano-7-deazaguanine reductase</fullName>
            <ecNumber evidence="1">1.7.1.13</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="1">7-cyano-7-carbaguanine reductase</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="1">NADPH-dependent nitrile oxidoreductase</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="1">PreQ(0) reductase</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="1" type="primary">queF</name>
        <name type="ordered locus">Daci_5285</name>
    </gene>
    <organism>
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference key="1">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain>DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="1">Catalyzes the NADPH-dependent reduction of 7-cyano-7-deazaguanine (preQ0) to 7-aminomethyl-7-deazaguanine (preQ1).</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>7-aminomethyl-7-carbaguanine + 2 NADP(+) = 7-cyano-7-deazaguanine + 3 H(+) + 2 NADPH</text>
            <dbReference type="Rhea" id="RHEA:13409"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:45075"/>
            <dbReference type="ChEBI" id="CHEBI:57783"/>
            <dbReference type="ChEBI" id="CHEBI:58349"/>
            <dbReference type="ChEBI" id="CHEBI:58703"/>
            <dbReference type="EC" id="1.7.1.13"/>
        </reaction>
    </comment>
    <comment type="pathway">
        <text evidence="1">tRNA modification; tRNA-queuosine biosynthesis.</text>
    </comment>
    <comment type="subunit">
        <text evidence="1">Homodimer.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="1">Belongs to the GTP cyclohydrolase I family. QueF type 2 subfamily.</text>
    </comment>
    <dbReference type="EC" id="1.7.1.13" evidence="1"/>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX37914.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012207083.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A9BNL9"/>
    <dbReference type="SMR" id="A9BNL9"/>
    <dbReference type="STRING" id="398578.Daci_5285"/>
    <dbReference type="PRIDE" id="A9BNL9"/>
    <dbReference type="EnsemblBacteria" id="ABX37914">
        <property type="protein sequence ID" value="ABX37914"/>
        <property type="gene ID" value="Daci_5285"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_5285"/>
    <dbReference type="eggNOG" id="COG0780">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="eggNOG" id="COG2904">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_054738_0_0_4"/>
    <dbReference type="OMA" id="QCVERIY"/>
    <dbReference type="UniPathway" id="UPA00392"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046857">
        <property type="term" value="F:oxidoreductase activity, acting on other nitrogenous compounds as donors, with NAD or NADP as acceptor"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0033739">
        <property type="term" value="F:preQ1 synthase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008616">
        <property type="term" value="P:queuosine biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.1130.10">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00817">
        <property type="entry name" value="QueF_type2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043133">
        <property type="entry name" value="GTP-CH-I_C/QueF"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029500">
        <property type="entry name" value="QueF"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029139">
        <property type="entry name" value="QueF_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016428">
        <property type="entry name" value="QueF_type2"/>
    </dbReference>
    <dbReference type="Pfam" id="PF14489">
        <property type="entry name" value="QueF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF14819">
        <property type="entry name" value="QueF_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF004750">
        <property type="entry name" value="Nitrile_oxidored_YqcD_prd"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR03138">
        <property type="entry name" value="QueF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword id="KW-0963">Cytoplasm</keyword>
    <keyword id="KW-0521">NADP</keyword>
    <keyword id="KW-0560">Oxidoreductase</keyword>
    <keyword id="KW-0671">Queuosine biosynthesis</keyword>
    <keyword id="KW-1185">Reference proteome</keyword>
    <feature type="chain" id="PRO_1000134277" description="NADPH-dependent 7-cyano-7-deazaguanine reductase">
        <location>
            <begin position="1"/>
            <end position="282"/>
        </location>
    </feature>
    <feature type="active site" description="Thioimide intermediate" evidence="1">
        <location>
            <position position="189"/>
        </location>
    </feature>
    <feature type="active site" description="Proton donor" evidence="1">
        <location>
            <position position="196"/>
        </location>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <begin position="82"/>
            <end position="84"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <begin position="84"/>
            <end position="85"/>
        </location>
        <ligand>
            <name>NADPH</name>
            <dbReference type="ChEBI" id="CHEBI:57783"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <begin position="228"/>
            <end position="229"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <begin position="257"/>
            <end position="258"/>
        </location>
        <ligand>
            <name>NADPH</name>
            <dbReference type="ChEBI" id="CHEBI:57783"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000255" key="1">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00817"/>
        </source>
    </evidence>
    <sequence length="282" mass="31997" checksum="C0C1191A89BF5228" modified="2008-01-15" version="1">MNTPEQSQLGKSSAYIDQYAPSLLFPLPRAPKREEIGVQGSQMPFFGADLWTAFELSWLNLRGKPQVALVHFTIPCETPNLIESKSFKLYLNSFNNTRLADAAEVQARLRTDLAEALWRGSEQKGSIGVKIIGLDRFDQEMVQELDGLLLDRLDVECTQYQPAPELLHANHEEAPVTETLVSHLLKSNCLVTGQPDWGSVQIRYSGAQIDQEGLLQYLVSFRNHNEFHEQCVERIFMDIWTRCRPLKLSVYARYTRRGGLDINPFRTSHPGALPANVRSARQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="59" xmlns="http://uniprot.org/uniprot">
    <accession>A9BNR7</accession>
    <name>A9BNR7_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="3">TRAP dicarboxylate transporter-DctP subunit</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Daci_5333</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="4" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX37962.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012207131.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_5333"/>
    <dbReference type="PRIDE" id="A9BNR7"/>
    <dbReference type="EnsemblBacteria" id="ABX37962">
        <property type="protein sequence ID" value="ABX37962"/>
        <property type="gene ID" value="Daci_5333"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_5333"/>
    <dbReference type="eggNOG" id="COG1638">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_036176_2_3_4"/>
    <dbReference type="OMA" id="TQAWLPK"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0071702">
        <property type="term" value="P:organic substance transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="GO" id="GO:0055085">
        <property type="term" value="P:transmembrane transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.190.170">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018389">
        <property type="entry name" value="DctP_fam"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038404">
        <property type="entry name" value="TRAP_DctP_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33376">
        <property type="entry name" value="PTHR33376"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03480">
        <property type="entry name" value="DctP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1 2" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="2">
        <location>
            <begin position="1"/>
            <end position="26"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5002732950" evidence="2">
        <location>
            <begin position="27"/>
            <end position="332"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022729"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ABX37962.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="332" mass="36544" checksum="0951C66C81FB16B3" modified="2008-01-15" version="1">MTVSRRTLISALAPAALQLTAGAAWSKGHRLQLSAAYGDGIFHTQNLRNFAARVHADTQQALEIDVVSNSALKPMAQVLPALKRNEIQFGEVLMSSYVDMHPLLGMDSLPFIVRGFDEAARLWQLTRPVLQEFLLAQQGVRLLFAVPWPAQGLFCRRPVNSIVDLKGLRLRVQSDATKRLAELWGAQPVVLAAGDLGMVLEQGGIDAMVSSSATGVDSQAWKTMKVFLDIKAWIPKNMLCVSELAWKGFAEPERQAISRAAVLAEKEGWALAQQADELGKKVLVDNKMSVTAPSADLRRMLDLVGERFGREWVAKAGSSNMSVLMEYNKKRH</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="90" xmlns="http://uniprot.org/uniprot">
    <accession>A9BNW9</accession>
    <name>A9BNW9_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="6">Lipoprotein signal peptidase</fullName>
            <ecNumber evidence="6">3.4.23.36</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="6">Prolipoprotein signal peptidase</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="6">Signal peptidase II</fullName>
            <shortName evidence="6">SPase II</shortName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="6" type="primary">lspA</name>
        <name evidence="9" type="ordered locus">Daci_5385</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="9 10" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="10" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="6 7">This protein specifically catalyzes the removal of signal peptides from prolipoproteins.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="6 7">
            <text>Release of signal peptides from bacterial membrane prolipoproteins. Hydrolyzes -Xaa-Yaa-Zaa-|-(S,diacylglyceryl)Cys-, in which Xaa is hydrophobic (preferably Leu), and Yaa (Ala or Ser) and Zaa (Gly or Ala) have small, neutral side chains.</text>
            <dbReference type="EC" id="3.4.23.36"/>
        </reaction>
    </comment>
    <comment type="pathway">
        <text evidence="6">Protein modification; lipoprotein biosynthesis (signal peptide cleavage).</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="6">Cell inner membrane</location>
            <topology evidence="6">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="1 6 8">Belongs to the peptidase A8 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="6">Lacks conserved residue(s) required for the propagation of feature annotation.</text>
    </comment>
    <dbReference type="EC" id="3.4.23.36" evidence="6"/>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX38014.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012207183.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_5385"/>
    <dbReference type="EnsemblBacteria" id="ABX38014">
        <property type="protein sequence ID" value="ABX38014"/>
        <property type="gene ID" value="Daci_5385"/>
    </dbReference>
    <dbReference type="GeneID" id="60689733"/>
    <dbReference type="KEGG" id="dac:Daci_5385"/>
    <dbReference type="eggNOG" id="COG0597">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_083252_4_0_4"/>
    <dbReference type="OMA" id="ASKLWLY"/>
    <dbReference type="UniPathway" id="UPA00665"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004190">
        <property type="term" value="F:aspartic-type endopeptidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006508">
        <property type="term" value="P:proteolysis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00161">
        <property type="entry name" value="LspA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001872">
        <property type="entry name" value="Peptidase_A8"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33695">
        <property type="entry name" value="PTHR33695"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01252">
        <property type="entry name" value="Peptidase_A8"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00781">
        <property type="entry name" value="LIPOSIGPTASE"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00077">
        <property type="entry name" value="lspA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00855">
        <property type="entry name" value="SPASE_II"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3 6 7" id="KW-0064">Aspartyl protease</keyword>
    <keyword evidence="6" id="KW-0997">Cell inner membrane</keyword>
    <keyword evidence="2 6" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="4 6 7" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="9" id="KW-0449">Lipoprotein</keyword>
    <keyword evidence="5 6" id="KW-0472">Membrane</keyword>
    <keyword evidence="6 7" id="KW-0645">Protease</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="6" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="6" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="77"/>
            <end position="95"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="102"/>
            <end position="119"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="139"/>
            <end position="159"/>
        </location>
    </feature>
    <feature type="active site" evidence="6">
        <location>
            <position position="129"/>
        </location>
    </feature>
    <feature type="active site" evidence="6">
        <location>
            <position position="147"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00006139"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022750"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00161"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="RuleBase" id="RU000594"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="RuleBase" id="RU004181"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="ABX38014.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="171" mass="18955" checksum="2BEE5BCA4D3526D0" modified="2008-01-15" version="1">MTPTFAAVPESRNSRIWPWLAWSLAIIAIDQLTKQWILGAYQLGDWTPITGFFNIVRAHNTGAAFSFLAGAGGWQRWLFVGIGVAATLLIVWQLRKHPGQKLFCFSLASILGGAIGNVVDRLQHGYVVDFLDFYWGRSHFPAFNAADIAISVGAALLILDEVLRARRAKRT</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="96" xmlns="http://uniprot.org/uniprot">
    <accession>A9BP07</accession>
    <name>A9BP07_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="6">Two component transcriptional regulator, winged helix family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ordered locus">Daci_5423</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="7" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX38052.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_5423"/>
    <dbReference type="PRIDE" id="A9BP07"/>
    <dbReference type="EnsemblBacteria" id="ABX38052">
        <property type="protein sequence ID" value="ABX38052"/>
        <property type="gene ID" value="Daci_5423"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_5423"/>
    <dbReference type="eggNOG" id="COG0745">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_000445_30_4_4"/>
    <dbReference type="OMA" id="KRLGEPW"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000160">
        <property type="term" value="P:phosphorelay signal transduction system"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006355">
        <property type="term" value="P:regulation of transcription, DNA-templated"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd00383">
        <property type="entry name" value="trans_reg_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011006">
        <property type="entry name" value="CheY-like_superfamily"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001867">
        <property type="entry name" value="OmpR/PhoB-type_DNA-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016032">
        <property type="entry name" value="Sig_transdc_resp-reg_C-effctor"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001789">
        <property type="entry name" value="Sig_transdc_resp-reg_receiver"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR039420">
        <property type="entry name" value="WalR-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR48111">
        <property type="entry name" value="PTHR48111"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00072">
        <property type="entry name" value="Response_reg"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00486">
        <property type="entry name" value="Trans_reg_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00448">
        <property type="entry name" value="REC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00862">
        <property type="entry name" value="Trans_reg_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46894">
        <property type="entry name" value="SSF46894"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52172">
        <property type="entry name" value="SSF52172"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51755">
        <property type="entry name" value="OMPR_PHOB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50110">
        <property type="entry name" value="RESPONSE_REGULATORY"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1 3" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="2" id="KW-0597">Phosphoprotein</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Response regulatory" evidence="4">
        <location>
            <begin position="11"/>
            <end position="125"/>
        </location>
    </feature>
    <feature type="domain" description="OmpR/PhoB-type" evidence="5">
        <location>
            <begin position="134"/>
            <end position="237"/>
        </location>
    </feature>
    <feature type="DNA-binding region" description="OmpR/PhoB-type" evidence="3">
        <location>
            <begin position="134"/>
            <end position="237"/>
        </location>
    </feature>
    <feature type="modified residue" description="4-aspartylphosphate" evidence="2">
        <location>
            <position position="60"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00169"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU01091"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="PROSITE" id="PS50110"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="PROSITE" id="PS51755"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="ABX38052.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="239" mass="26548" checksum="7E95DDFF7345A250" modified="2008-01-15" version="1">MQGLPMTNAPRVLLVEDDPAIARTVCYALERDGIAVRHCLQLADARAQWQAQPPDALLLDVGLPDGNGLDWCRELRQAGAAVPLLVLSARGEEMDRVLGLELGADDYLTKPFSPRELVARTRALLRRVQRLQPAPTASAAPADALFSIDPQGQRVRMQGVPLELTRREYQLLRCLLERPGRILSREFLLDSIWGQDSDSTDRTVDTHVKTLRAKLRAQAPQQDFITTHRGMGYSLTLPG</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="69" xmlns="http://uniprot.org/uniprot">
    <accession>A9BPH7</accession>
    <name>A9BPH7_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="8">Acyl-CoA dehydrogenase domain protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="8" type="ordered locus">Daci_0198</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="9" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>FAD</name>
            <dbReference type="ChEBI" id="CHEBI:57692"/>
        </cofactor>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the acyl-CoA dehydrogenase family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX32844.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012202137.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_0198"/>
    <dbReference type="PRIDE" id="A9BPH7"/>
    <dbReference type="EnsemblBacteria" id="ABX32844">
        <property type="protein sequence ID" value="ABX32844"/>
        <property type="gene ID" value="Daci_0198"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_0198"/>
    <dbReference type="eggNOG" id="COG1960">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_018204_0_2_4"/>
    <dbReference type="OMA" id="MMQKAAT"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003995">
        <property type="term" value="F:acyl-CoA dehydrogenase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0050660">
        <property type="term" value="F:flavin adenine dinucleotide binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.540.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.110.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006089">
        <property type="entry name" value="Acyl-CoA_DH_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006091">
        <property type="entry name" value="Acyl-CoA_Oxase/DH_mid-dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR046373">
        <property type="entry name" value="Acyl-CoA_Oxase/DH_mid-dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036250">
        <property type="entry name" value="AcylCo_DH-like_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009075">
        <property type="entry name" value="AcylCo_DH/oxidase_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013786">
        <property type="entry name" value="AcylCoA_DH/ox_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037069">
        <property type="entry name" value="AcylCoA_DH/ox_N_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009100">
        <property type="entry name" value="AcylCoA_DH/oxidase_NM_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00441">
        <property type="entry name" value="Acyl-CoA_dh_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02770">
        <property type="entry name" value="Acyl-CoA_dh_M"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02771">
        <property type="entry name" value="Acyl-CoA_dh_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47203">
        <property type="entry name" value="SSF47203"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56645">
        <property type="entry name" value="SSF56645"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00073">
        <property type="entry name" value="ACYL_COA_DH_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-0274">FAD</keyword>
    <keyword evidence="3" id="KW-0285">Flavoprotein</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Acyl-CoA_dh_N" evidence="7">
        <location>
            <begin position="12"/>
            <end position="117"/>
        </location>
    </feature>
    <feature type="domain" description="Acyl-CoA_dh_M" evidence="6">
        <location>
            <begin position="122"/>
            <end position="220"/>
        </location>
    </feature>
    <feature type="domain" description="Acyl-CoA_dh_1" evidence="5">
        <location>
            <begin position="233"/>
            <end position="365"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001974"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00009347"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022630"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022827"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="Pfam" id="PF00441"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="Pfam" id="PF02770"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="Pfam" id="PF02771"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="ABX32844.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="388" mass="43516" checksum="F26BA622FF4094DC" modified="2008-01-15" version="1">MIEHTLSNNFPEIRDAIRALCAEFPDEYFRKIDEQRAYPETFVDALTKAGWLAALIPQEYGGSGLGLTEASVIMEEINRCGGNSGACHGQMYNMGTLLRHGSQAQKEKYLPRIASGEWRLQSMGVTEPTTGTDTTKIKTSAVKKDGRYVVNGQKVWISRVQHSDWMILLARTTPLAEVKKKSEGMSIFMVDLAEAQKSGLTVRPIPNMVNHETNELFFENLEIPEENLIGEEGKGFKYILDGLNAERTLIAAECIGDGYWFLDRVTNYVRDRNVFGRPIGQNQGVQFPIADAFIEVEAANLMRWKACEMFDANQAMGAQANMAKYLAAKASWEAANACIQFHGGFGFACEYDVERKFRETRLYQVAPISTNLIYSYVAEHILGLPRSF</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="76" xmlns="http://uniprot.org/uniprot">
    <accession>A9BPK4</accession>
    <name>A9BPK4_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Formamidase</fullName>
            <ecNumber evidence="2">3.5.1.49</ecNumber>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_0225</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="4" key="3">
        <citation type="submission" date="2009-06" db="PDB data bank">
            <title>The Structure of Gamma Lactamase from Delftia Acidovorans.</title>
            <authorList>
                <person name="Isupov M.N."/>
                <person name="Line K."/>
                <person name="Gonsalvez I.S."/>
                <person name="Gange-Harris P."/>
                <person name="Lanzotti M."/>
                <person name="Saneei V."/>
                <person name="Littlechild J.A."/>
            </authorList>
        </citation>
        <scope>X-RAY CRYSTALLOGRAPHY (2.08 ANGSTROMS) IN COMPLEX WITH ZINC</scope>
    </reference>
    <dbReference type="EC" id="3.5.1.49" evidence="2"/>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX32871.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012202164.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="PDB" id="2WKN">
        <property type="method" value="X-ray"/>
        <property type="resolution" value="2.08 A"/>
        <property type="chains" value="A/B/C/D/E/F/G/H=1-409"/>
    </dbReference>
    <dbReference type="PDBsum" id="2WKN"/>
    <dbReference type="SMR" id="A9BPK4"/>
    <dbReference type="STRING" id="398578.Daci_0225"/>
    <dbReference type="PRIDE" id="A9BPK4"/>
    <dbReference type="EnsemblBacteria" id="ABX32871">
        <property type="protein sequence ID" value="ABX32871"/>
        <property type="gene ID" value="Daci_0225"/>
    </dbReference>
    <dbReference type="GeneID" id="60690629"/>
    <dbReference type="KEGG" id="dac:Daci_0225"/>
    <dbReference type="eggNOG" id="COG2421">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_032013_0_1_4"/>
    <dbReference type="OMA" id="NGGNHDI"/>
    <dbReference type="BRENDA" id="3.5.2.B2">
        <property type="organism ID" value="1586"/>
    </dbReference>
    <dbReference type="EvolutionaryTrace" id="A9BPK4"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004328">
        <property type="term" value="F:formamidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004304">
        <property type="entry name" value="FmdA_AmdA"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR31891">
        <property type="entry name" value="PTHR31891"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03069">
        <property type="entry name" value="FmdA_AmdA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="evidence at protein level"/>
    <keyword evidence="4" id="KW-0002">3D-structure</keyword>
    <keyword evidence="2" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="4" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4" id="KW-0862">Zinc</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="202"/>
            <end position="223"/>
        </location>
    </feature>
    <feature type="binding site" evidence="4">
        <location>
            <position position="223"/>
        </location>
        <ligand>
            <name>Zinc</name>
            <dbReference type="ChEBI" id="CHEBI:27363"/>
            <label>1</label>
        </ligand>
    </feature>
    <feature type="binding site" evidence="4">
        <location>
            <position position="225"/>
        </location>
        <ligand>
            <name>Zinc</name>
            <dbReference type="ChEBI" id="CHEBI:27363"/>
            <label>1</label>
        </ligand>
    </feature>
    <feature type="binding site" evidence="4">
        <location>
            <position position="250"/>
        </location>
    </feature>
    <feature type="binding site" evidence="4">
        <location>
            <position position="252"/>
        </location>
        <ligand>
            <name>Zinc</name>
            <dbReference type="ChEBI" id="CHEBI:27363"/>
            <label>2</label>
        </ligand>
    </feature>
    <feature type="binding site" evidence="4">
        <location>
            <position position="267"/>
        </location>
        <ligand>
            <name>Zinc</name>
            <dbReference type="ChEBI" id="CHEBI:27363"/>
            <label>2</label>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX32871.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <evidence type="ECO:0007829" key="4">
        <source>
            <dbReference type="PDB" id="2WKN"/>
        </source>
    </evidence>
    <sequence length="409" mass="44420" checksum="16AD34F15541FCC5" modified="2008-01-15" version="1">MAETLIKVDLNQSPYDNPQVHNRWHPDIPMAVWVEPGAEFKLETYDWTGGAIKNDDSAEDVRDVDLSTVHFLSGPVGVKGAEPGDLLVVDLLDIGARDDSLWGFNGFFSKQNGGGFLDEHFPLAQKSIWDFHGMFTKSRHIPGVNFAGLIHPGLIGCLPDPKMLASWNERETGLIATDPDRIPGLANPPNATTAHMGQMQGEARDKAAAEGARTVPPREHGGNCDIKDLSRGSRVFFPVYVDGAGLSVGDLHFSQGDGEITFCGAIEMAGWVHMKVSLIKGGMAKYGIKNPIFKPSPMTPNYKDYLIFEGISVDEKGKQHYLDVTVAYRQACLNAIEYLKKFGYSGAQAYSLLGTAPVQGHISGVVDVPNACATLWLPTEIFDFDINPTAEGPQKIITGGVDLPIAQDK</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="68" xmlns="http://uniprot.org/uniprot">
    <accession>A9BPR2</accession>
    <name>A9BPR2_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="4">Serine-type D-Ala-D-Ala carboxypeptidase</fullName>
            <ecNumber evidence="4">3.4.16.4</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="17" type="ordered locus">Daci_0385</name>
    </gene>
    <organism evidence="17 18">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="17 18" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="18">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="18" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="18">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="1">Removes C-terminal D-alanyl residues from sugar-peptide cell wall precursors.</text>
    </comment>
    <comment type="pathway">
        <text evidence="2">Cell wall biogenesis; peptidoglycan biosynthesis.</text>
    </comment>
    <comment type="similarity">
        <text evidence="3 14">Belongs to the peptidase S11 family.</text>
    </comment>
    <dbReference type="EC" id="3.4.16.4" evidence="4"/>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX33031.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012202324.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_0385"/>
    <dbReference type="PRIDE" id="A9BPR2"/>
    <dbReference type="EnsemblBacteria" id="ABX33031">
        <property type="protein sequence ID" value="ABX33031"/>
        <property type="gene ID" value="Daci_0385"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_0385"/>
    <dbReference type="eggNOG" id="COG1686">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_027070_8_1_4"/>
    <dbReference type="OMA" id="TNEAKYC"/>
    <dbReference type="UniPathway" id="UPA00219"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009002">
        <property type="term" value="F:serine-type D-Ala-D-Ala carboxypeptidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0071555">
        <property type="term" value="P:cell wall organization"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009252">
        <property type="term" value="P:peptidoglycan biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniPathway"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006508">
        <property type="term" value="P:proteolysis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008360">
        <property type="term" value="P:regulation of cell shape"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.410.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.710.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012338">
        <property type="entry name" value="Beta-lactam/transpept-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015956">
        <property type="entry name" value="Peniciliin-bd_prot_C_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018044">
        <property type="entry name" value="Peptidase_S11"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012907">
        <property type="entry name" value="Peptidase_S11_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037167">
        <property type="entry name" value="Peptidase_S11_C_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001967">
        <property type="entry name" value="Peptidase_S11_N"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07943">
        <property type="entry name" value="PBP5_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00768">
        <property type="entry name" value="Peptidase_S11"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00725">
        <property type="entry name" value="DADACBPTASE1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00936">
        <property type="entry name" value="PBP5_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56601">
        <property type="entry name" value="SSF56601"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF69189">
        <property type="entry name" value="SSF69189"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5 17" id="KW-0121">Carboxypeptidase</keyword>
    <keyword evidence="9" id="KW-0133">Cell shape</keyword>
    <keyword evidence="11" id="KW-0961">Cell wall biogenesis/degradation</keyword>
    <keyword evidence="8 17" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="10" id="KW-0573">Peptidoglycan synthesis</keyword>
    <keyword evidence="6" id="KW-0645">Protease</keyword>
    <keyword evidence="18" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="7 15" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="15">
        <location>
            <begin position="1"/>
            <end position="24"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5002732980" description="Serine-type D-Ala-D-Ala carboxypeptidase" evidence="15">
        <location>
            <begin position="25"/>
            <end position="389"/>
        </location>
    </feature>
    <feature type="domain" description="PBP5_C" evidence="16">
        <location>
            <begin position="283"/>
            <end position="373"/>
        </location>
    </feature>
    <feature type="active site" description="Acyl-ester intermediate" evidence="12">
        <location>
            <position position="63"/>
        </location>
    </feature>
    <feature type="active site" description="Proton acceptor" evidence="12">
        <location>
            <position position="66"/>
        </location>
    </feature>
    <feature type="active site" evidence="12">
        <location>
            <position position="123"/>
        </location>
    </feature>
    <feature type="binding site" evidence="13">
        <location>
            <position position="228"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00003217"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00004752"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00007164"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00012448"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022645"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022670"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022729"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00022960"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00022984"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="ARBA" id="ARBA00023316"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="12">
        <source>
            <dbReference type="PIRSR" id="PIRSR618044-1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="13">
        <source>
            <dbReference type="PIRSR" id="PIRSR618044-2"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="14">
        <source>
            <dbReference type="RuleBase" id="RU004016"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="15">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="16">
        <source>
            <dbReference type="SMART" id="SM00936"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="17">
        <source>
            <dbReference type="EMBL" id="ABX33031.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="18">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="389" mass="41945" checksum="154C5D9CDF710E6B" modified="2008-01-15" version="1">MKPLSSTLRVLALAAAMAPALALAQITPPQPPEIAARNYLLVDVTANQVLGAKDIDAPIEQASLTKLMTGYLVFDALRAKKITLEQRLPVSERAWKMPGSRMFIDPKMQVPVDDLIKGMIVQSGNDATMALAEGVGGSAENFVRLMNEQAKALGMKNTSYKNPEGLTEPGHLTTARDLSILAQRLMQDFPEYMHYYSTKKYFYPGTPASNGTNRNSLLFRDPTVDGLKTGHTAAAGYCLVATAKRDLPNVGSRRLISIVLGAASENARANESQKLLNWGYAAFDSVKLFDAEQAVATPEVWKGKANTVKIGRTTPIVVTVPAGSGGKLSTEVVRQDPLIAPFTKGQAMGTLKVKMGADTVAEVPLVALEGVEQAGFFGRAWDAIRLWIK</sequence>
</entry>
<entry dataset="Swiss-Prot" created="2008-11-25" modified="2022-08-03" version="72" xmlns="http://uniprot.org/uniprot">
    <accession>A9BPS3</accession>
    <name>RL22_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">50S ribosomal protein L22</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="1" type="primary">rplV</name>
        <name type="ordered locus">Daci_0396</name>
    </gene>
    <organism>
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference key="1">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain>DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="1">This protein binds specifically to 23S rRNA; its binding is stimulated by other ribosomal proteins, e.g. L4, L17, and L20. It is important during the early stages of 50S assembly. It makes multiple contacts with different domains of the 23S rRNA in the assembled 50S subunit and ribosome.</text>
    </comment>
    <comment type="function">
        <text evidence="1">The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome.</text>
    </comment>
    <comment type="subunit">
        <text evidence="1">Part of the 50S ribosomal subunit.</text>
    </comment>
    <comment type="similarity">
        <text evidence="1">Belongs to the universal ribosomal protein uL22 family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX33042.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012202334.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A9BPS3"/>
    <dbReference type="SMR" id="A9BPS3"/>
    <dbReference type="STRING" id="398578.Daci_0396"/>
    <dbReference type="PRIDE" id="A9BPS3"/>
    <dbReference type="EnsemblBacteria" id="ABX33042">
        <property type="protein sequence ID" value="ABX33042"/>
        <property type="gene ID" value="Daci_0396"/>
    </dbReference>
    <dbReference type="GeneID" id="60690803"/>
    <dbReference type="KEGG" id="dac:Daci_0396"/>
    <dbReference type="eggNOG" id="COG0091">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_083987_3_3_4"/>
    <dbReference type="OMA" id="KRIQPRA"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015934">
        <property type="term" value="C:large ribosomal subunit"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0019843">
        <property type="term" value="F:rRNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003735">
        <property type="term" value="F:structural constituent of ribosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006412">
        <property type="term" value="P:translation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd00336">
        <property type="entry name" value="Ribosomal_L22"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.470.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01331_B">
        <property type="entry name" value="Ribosomal_L22_B"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001063">
        <property type="entry name" value="Ribosomal_L22"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018260">
        <property type="entry name" value="Ribosomal_L22/L17_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036394">
        <property type="entry name" value="Ribosomal_L22/L17_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005727">
        <property type="entry name" value="Ribosomal_L22_bac/chlpt-type"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR13501">
        <property type="entry name" value="PTHR13501"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00237">
        <property type="entry name" value="Ribosomal_L22"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54843">
        <property type="entry name" value="SSF54843"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01044">
        <property type="entry name" value="rplV_bact"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00464">
        <property type="entry name" value="RIBOSOMAL_L22"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword id="KW-1185">Reference proteome</keyword>
    <keyword id="KW-0687">Ribonucleoprotein</keyword>
    <keyword id="KW-0689">Ribosomal protein</keyword>
    <keyword id="KW-0694">RNA-binding</keyword>
    <keyword id="KW-0699">rRNA-binding</keyword>
    <feature type="chain" id="PRO_0000354461" description="50S ribosomal protein L22">
        <location>
            <begin position="1"/>
            <end position="110"/>
        </location>
    </feature>
    <evidence type="ECO:0000255" key="1">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01331"/>
        </source>
    </evidence>
    <sequence length="110" mass="12073" checksum="A4C7AD17DA622297" modified="2008-01-15" version="1">MSETRAVLRGVRLSVDKGRLVADLIRGKKVDQALNILTFTQKKAAVIIKKVLESAIANAEHNDGADIDELKVKTIFVEQGTTLKRFTARAKGRGNRISKPTCHVYVTVGN</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="55" xmlns="http://uniprot.org/uniprot">
    <accession>A9BPW1</accession>
    <name>A9BPW1_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="3">P-type conjugative transfer protein TrbJ</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Daci_0434</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="4" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX33080.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012202371.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_0434"/>
    <dbReference type="PRIDE" id="A9BPW1"/>
    <dbReference type="EnsemblBacteria" id="ABX33080">
        <property type="protein sequence ID" value="ABX33080"/>
        <property type="gene ID" value="Daci_0434"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_0434"/>
    <dbReference type="eggNOG" id="COG5314">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_065326_1_0_4"/>
    <dbReference type="OMA" id="SRWENTV"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025415">
        <property type="entry name" value="DUF4141"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014147">
        <property type="entry name" value="T4SS_TrbJ"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13605">
        <property type="entry name" value="DUF4141"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR02780">
        <property type="entry name" value="TrbJ_Ti"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="2">
        <location>
            <begin position="1"/>
            <end position="21"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5002732984" evidence="2">
        <location>
            <begin position="22"/>
            <end position="241"/>
        </location>
    </feature>
    <feature type="coiled-coil region" evidence="1">
        <location>
            <begin position="35"/>
            <end position="69"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ABX33080.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="241" mass="26822" checksum="CF4A937FF5BE72F0" modified="2008-01-15" version="1">MKKRLVAAAIAAMLCTATAHAQWVVVDPTNLVQNTLTAIRTLEQINNQIQQLQNEAQMLMNQARNLASLPSSVVGQLRANLATTQRLIDQARGLAYDVTNLDREFQRLYPEQYAATVSGDQMYRDTQERWKNTLNGLQTTMRMQAQVSQNLGEDESVLADLVGKSQSAEGALQAMQAMNQLLALQAKQSIQSQRLQITQDRAAALELARQAAATERGREMTRRFLGSGTPYTPQAVDFYNH</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="48" xmlns="http://uniprot.org/uniprot">
    <accession>A9BPY0</accession>
    <name>A9BPY0_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_0453</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX33099.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_0453"/>
    <dbReference type="PRIDE" id="A9BPY0"/>
    <dbReference type="EnsemblBacteria" id="ABX33099">
        <property type="protein sequence ID" value="ABX33099"/>
        <property type="gene ID" value="Daci_0453"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_0453"/>
    <dbReference type="eggNOG" id="COG3843">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_027492_1_0_4"/>
    <dbReference type="OMA" id="AWAVHAD"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR021795">
        <property type="entry name" value="DUF3363"/>
    </dbReference>
    <dbReference type="Pfam" id="PF11843">
        <property type="entry name" value="DUF3363"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="82"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX33099.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="678" mass="74560" checksum="662F6ED965086C46" modified="2008-01-15" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="66" xmlns="http://uniprot.org/uniprot">
    <accession>A9BPZ4</accession>
    <name>A9BPZ4_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="5">YdjC family protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ordered locus">Daci_0563</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="6" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </cofactor>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX33209.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012202495.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_0563"/>
    <dbReference type="PRIDE" id="A9BPZ4"/>
    <dbReference type="EnsemblBacteria" id="ABX33209">
        <property type="protein sequence ID" value="ABX33209"/>
        <property type="gene ID" value="Daci_0563"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_0563"/>
    <dbReference type="eggNOG" id="COG3394">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_064244_3_0_4"/>
    <dbReference type="OMA" id="FVDGHQH"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005975">
        <property type="term" value="P:carbohydrate metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011330">
        <property type="entry name" value="Glyco_hydro/deAcase_b/a-brl"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006879">
        <property type="entry name" value="YdjC-like"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR31609">
        <property type="entry name" value="PTHR31609"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04794">
        <property type="entry name" value="YdjC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF88713">
        <property type="entry name" value="SSF88713"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-0119">Carbohydrate metabolism</keyword>
    <keyword evidence="3" id="KW-0460">Magnesium</keyword>
    <keyword evidence="2" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001946"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022842"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023277"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="ABX33209.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="288" mass="31341" checksum="A091337792E1FC5A" modified="2008-01-15" version="1">MNTVPARNNGEKALARTVVLCADDYALHPLVDEAVEQLTLQGRLSATSCMTTSPHWRQAARRLPALRPRLSLGLHFNLTEGHGLQPAAGIGAVIARAYAGALGGTAMRDAWRRQLDAFEDALGMAPDFIDGHQHVHQLPGVRAALVQELRQRYGDNADDLPWVRSTTPAGQLWRDPKAAIIALLGGWTTTRRLRRQGVPLNHGFGGVYAFDQPTPEGYGRHMAQWLTQLQPGSLMMCHPATAPVQGDAIGAQRAVEYAYLRSDAFAQALEQAHCHIAQGPLTPLFTSN</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="73" xmlns="http://uniprot.org/uniprot">
    <accession>A9BPZ5</accession>
    <name>A9BPZ5_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="12">L-asparaginase, type II</fullName>
            <ecNumber evidence="12">3.5.1.38</ecNumber>
        </submittedName>
    </protein>
    <gene>
        <name evidence="12" type="ordered locus">Daci_0564</name>
    </gene>
    <organism evidence="12 13">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="12 13" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="13">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="13" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="13">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1 8">Belongs to the asparaginase 1 family.</text>
    </comment>
    <dbReference type="EC" id="3.5.1.38" evidence="12"/>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX33210.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012202496.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_0564"/>
    <dbReference type="PRIDE" id="A9BPZ5"/>
    <dbReference type="EnsemblBacteria" id="ABX33210">
        <property type="protein sequence ID" value="ABX33210"/>
        <property type="gene ID" value="Daci_0564"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_0564"/>
    <dbReference type="eggNOG" id="COG0252">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_019134_1_2_4"/>
    <dbReference type="OMA" id="RKNHTSR"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0110165">
        <property type="term" value="C:cellular anatomical entity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004067">
        <property type="term" value="F:asparaginase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0050417">
        <property type="term" value="F:glutamin-(asparagin-)ase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006528">
        <property type="term" value="P:asparagine metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.1170">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.40">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004550">
        <property type="entry name" value="AsnASE_II"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036152">
        <property type="entry name" value="Asp/glu_Ase-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006034">
        <property type="entry name" value="Asparaginase/glutaminase-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020827">
        <property type="entry name" value="Asparaginase/glutaminase_AS1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027475">
        <property type="entry name" value="Asparaginase/glutaminase_AS2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR040919">
        <property type="entry name" value="Asparaginase_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027473">
        <property type="entry name" value="L-asparaginase_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027474">
        <property type="entry name" value="L-asparaginase_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037152">
        <property type="entry name" value="L-asparaginase_N_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00710">
        <property type="entry name" value="Asparaginase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF17763">
        <property type="entry name" value="Asparaginase_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF001220">
        <property type="entry name" value="L-ASNase_gatD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00139">
        <property type="entry name" value="ASNGLNASE"/>
    </dbReference>
    <dbReference type="SMART" id="SM00870">
        <property type="entry name" value="Asparaginase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53774">
        <property type="entry name" value="SSF53774"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00520">
        <property type="entry name" value="asnASE_II"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00144">
        <property type="entry name" value="ASN_GLN_ASE_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00917">
        <property type="entry name" value="ASN_GLN_ASE_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51732">
        <property type="entry name" value="ASN_GLN_ASE_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2 12" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="13" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="9" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="9">
        <location>
            <begin position="1"/>
            <end position="26"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5002735905" evidence="9">
        <location>
            <begin position="27"/>
            <end position="378"/>
        </location>
    </feature>
    <feature type="domain" description="Asparaginase" evidence="10">
        <location>
            <begin position="53"/>
            <end position="245"/>
        </location>
    </feature>
    <feature type="domain" description="Asparaginase_C" evidence="11">
        <location>
            <begin position="266"/>
            <end position="375"/>
        </location>
    </feature>
    <feature type="region of interest" description="Substrate binding" evidence="4">
        <location>
            <begin position="142"/>
            <end position="143"/>
        </location>
    </feature>
    <feature type="active site" evidence="6">
        <location>
            <position position="62"/>
        </location>
    </feature>
    <feature type="active site" description="Acyl-ester intermediate" evidence="5">
        <location>
            <position position="62"/>
        </location>
    </feature>
    <feature type="active site" description="O-isoaspartyl threonine intermediate" evidence="3">
        <location>
            <position position="62"/>
        </location>
    </feature>
    <feature type="active site" evidence="7">
        <location>
            <position position="142"/>
        </location>
    </feature>
    <feature type="binding site" evidence="4">
        <location>
            <position position="109"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00010518"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="PIRSR" id="PIRSR001220-1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="PIRSR" id="PIRSR001220-2"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="PIRSR" id="PIRSR604550-50"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU10099"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU10100"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="RuleBase" id="RU004456"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="10">
        <source>
            <dbReference type="Pfam" id="PF00710"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="11">
        <source>
            <dbReference type="Pfam" id="PF17763"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="EMBL" id="ABX33210.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="13">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="378" mass="39326" checksum="414F99F4F9B4B8E4" modified="2008-01-15" version="1">MPFTPFRMTLMAVALALAGCASQPGASQAPAAAAPATAAAPAPAPTAQAGKPNVVVLATGGTIAGAGASAVNSATYTAAKVPVDKLLAGLPELSNIANVSGEQVFQIASESFTNKELLTLARRVNELAKQPGVDGIVVTHGTDTLEETAYFLNLVVPTDKPIVVVGSMRPGTAISADGALNLLGAVATAASKDSAGKGVLVSMNDNIDSARDVAKLTNIKTNAFASQWGPLGMVVEGKTYWFRAPVKRHTRGSEFNIEQITDLPAVDIVYGYGNVPATAIDALGKAGVKAIVHAGTGNGSVADRIVPKLNELRQKGVIVVRSSRVPAGFVLRNAEQPDDKYDWVVAHDLNPQKARLLAAVALTKTQDTKQLQRIFWEY</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-01-19" version="59" xmlns="http://uniprot.org/uniprot">
    <accession>A9BQ89</accession>
    <name>A9BQ89_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Acyltransferase 3</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Daci_0853</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="4" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX33499.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012202785.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_0853"/>
    <dbReference type="EnsemblBacteria" id="ABX33499">
        <property type="protein sequence ID" value="ABX33499"/>
        <property type="gene ID" value="Daci_0853"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_0853"/>
    <dbReference type="eggNOG" id="COG1835">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_005679_0_1_4"/>
    <dbReference type="OMA" id="YGDFSYG"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016747">
        <property type="term" value="F:acyltransferase activity, transferring groups other than amino-acyl groups"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002656">
        <property type="entry name" value="Acyl_transf_3_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01757">
        <property type="entry name" value="Acyl_transf_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-0012">Acyltransferase</keyword>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0808">Transferase</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="20"/>
            <end position="43"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="49"/>
            <end position="69"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="81"/>
            <end position="103"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="149"/>
            <end position="168"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="175"/>
            <end position="192"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="198"/>
            <end position="220"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="232"/>
            <end position="252"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="258"/>
            <end position="276"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="288"/>
            <end position="305"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="311"/>
            <end position="332"/>
        </location>
    </feature>
    <feature type="domain" description="Acyl_transf_3" evidence="2">
        <location>
            <begin position="14"/>
            <end position="307"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF01757"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ABX33499.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="358" mass="38297" checksum="0495B5151E4E4900" modified="2008-01-15" version="1">MQAHGVGTAARSNNFDALRLLAALLVIWSHQFAVMGLPVPQLLHNEPGALGVVIFFAISGYLVTLSWLADPHLGRFAARRALRIWPGLTAAVLLCALVLGPLVTSLPVKAYFAHPLTWDYLRNLWLDTQFALPGVFDGNVLASSVNGPLWTIPLEVGCYAFLAAAGALGLMRWRWVAPLVFLALLLGMQWRYSPAPGAAMPAWSFGLQYGMVFALGATLACWRHLWIGRRPIAMAAMLLVIGALYFKGPAIIAGQAPLLALAVVAVVAGSASTPVLKHAGHFGDFSYGLYIYAFPVQQLVAWHFADRLGYGAALACTVAGTGLLAVLSWHLLEKKALTFKPPRPASGVSKIPSAQVTG</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="52" xmlns="http://uniprot.org/uniprot">
    <accession>A9BQG5</accession>
    <name>A9BQG5_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Daci_0929</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="2" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX33575.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012202861.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_0929"/>
    <dbReference type="PRIDE" id="A9BQG5"/>
    <dbReference type="EnsemblBacteria" id="ABX33575">
        <property type="protein sequence ID" value="ABX33575"/>
        <property type="gene ID" value="Daci_0929"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_0929"/>
    <dbReference type="eggNOG" id="COG1878">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_030671_0_0_4"/>
    <dbReference type="OMA" id="DVIAMPL"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004061">
        <property type="term" value="F:arylformamidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0019441">
        <property type="term" value="P:tryptophan catabolic process to kynurenine"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.50.30.50">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007325">
        <property type="entry name" value="KFase/CYL"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037175">
        <property type="entry name" value="KFase_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04199">
        <property type="entry name" value="Cyclase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF102198">
        <property type="entry name" value="SSF102198"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ABX33575.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="327" mass="35996" checksum="647B1D58A6D2BB24" modified="2008-01-15" version="1">MGHAHDHGHTHDDAPLMEDLLRNAPSNWGRWGPDDEVGALNFLTPAEVLRGVSHIRSGETFTLQRLIGDPRGDPVWPGRTPAERTMVFDESSWDGPDAPRFPGGLHYADDKLDAFLQGSTQYDALGHVWYGGRIWNGYDARTTVGGLDKASVEALGARGIVGRGVLLDMARHRGKAALERAETFTHEDLMACAKAQGHTIEKHDILIVRTNFLSGFYEDQASFYDDFCEPGLTYSPELVDWFHAMEIPNLVTDTIANEVTMDPVHGVALPLHCALMRNLGVTLTEICDLEALADSCARDGRYTFLYVAAPLKIHRATGSPVNPVVIK</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="61" xmlns="http://uniprot.org/uniprot">
    <accession>A9BQJ6</accession>
    <name>A9BQJ6_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="6">ParB-like partition protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ordered locus">Daci_0051</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="7" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="3">Involved in chromosome partition. Localize to both poles of the predivisional cell following completion of DNA replication. Binds to the DNA origin of replication.</text>
    </comment>
    <comment type="similarity">
        <text evidence="1">Belongs to the ParB family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX32698.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012201991.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_0051"/>
    <dbReference type="PRIDE" id="A9BQJ6"/>
    <dbReference type="EnsemblBacteria" id="ABX32698">
        <property type="protein sequence ID" value="ABX32698"/>
        <property type="gene ID" value="Daci_0051"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_0051"/>
    <dbReference type="eggNOG" id="COG1475">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_023853_0_0_4"/>
    <dbReference type="OMA" id="IALSYQR"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041468">
        <property type="entry name" value="HTH_ParB/Spo0J"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004437">
        <property type="entry name" value="ParB/RepB/Spo0J"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003115">
        <property type="entry name" value="ParB/Sulfiredoxin_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036086">
        <property type="entry name" value="ParB/Sulfiredoxin_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF17762">
        <property type="entry name" value="HTH_ParB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02195">
        <property type="entry name" value="ParBc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00470">
        <property type="entry name" value="ParB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF110849">
        <property type="entry name" value="SSF110849"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00180">
        <property type="entry name" value="parB_part"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="ParB" evidence="5">
        <location>
            <begin position="38"/>
            <end position="132"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="4">
        <location>
            <begin position="1"/>
            <end position="29"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00006295"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00025472"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="SMART" id="SM00470"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="ABX32698.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="311" mass="33709" checksum="5C9F479765B68EF2" modified="2008-01-15" version="1">MVTKKPKGLGRGLEALLGPKVHDKEEGGGPVAETGLPSILQLDVMVPGQYQPRTHMDEGALYELAESIKAQGIMQPILVRRLAKGDHAGKYEIIAGERRFRAARIAGLAEVPVLVREVPDEAAAAMALIENIQREDLNPLEEAQGLSRLVKEFGLTHEQAAQAVGRSRSAATNILRLLNLADPVQTMLMAGDIDMGHARALLSLDRAAQITAGNQIAAKKLSVREAEALVKKIGADFSLVRQKSKKDGKSRDIKRVEEELSDLLMADVEVRIKKSVRRGGKLQEMGEVAIQFGSLDALNGLIERLRGDASE</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="80" xmlns="http://uniprot.org/uniprot">
    <accession>A9BQL2</accession>
    <name>A9BQL2_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Transcriptional regulator, LysR family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Daci_0067</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="4" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the LysR transcriptional regulatory family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX32714.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012202007.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_0067"/>
    <dbReference type="PRIDE" id="A9BQL2"/>
    <dbReference type="EnsemblBacteria" id="ABX32714">
        <property type="protein sequence ID" value="ABX32714"/>
        <property type="gene ID" value="Daci_0067"/>
    </dbReference>
    <dbReference type="GeneID" id="60690472"/>
    <dbReference type="KEGG" id="dac:Daci_0067"/>
    <dbReference type="eggNOG" id="COG0583">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_039613_6_3_4"/>
    <dbReference type="OMA" id="ANRDELC"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003700">
        <property type="term" value="F:DNA-binding transcription factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005119">
        <property type="entry name" value="LysR_subst-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000847">
        <property type="entry name" value="Tscrpt_reg_HTH_LysR"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036390">
        <property type="entry name" value="WH_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00126">
        <property type="entry name" value="HTH_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03466">
        <property type="entry name" value="LysR_substrate"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00039">
        <property type="entry name" value="HTHLYSR"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46785">
        <property type="entry name" value="SSF46785"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50931">
        <property type="entry name" value="HTH_LYSR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HTH lysR-type" evidence="2">
        <location>
            <begin position="1"/>
            <end position="58"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00009437"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS50931"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ABX32714.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="301" mass="32859" checksum="7C1DC63F5D43A121" modified="2008-01-15" version="1">MRLRHIEVFNAVMQTGSVSAAARLINITQPAVSRTLQHAELQLGFALFQRARGRLTPTNEALALFPHIEKLFEQLDEVQRLADNLRHGQAADRLTVLTVFALSREVLPRAVAGFRRRHPQVQVHVQALHTPQVVSALLLQEADVGFVISSVGQPALEHELLAEVDMFCVLPKGLLPPSRVREEGMELKDLAELPVVALDARDPLGMRLGQACREHGVGLSPVVTVQTYHAALSMAEYGLGAAIMDGCTALAADRRKVHVVPLLPRITVGVNALSLPQRPGSVLARAMTEEMRKALRELLAG</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="33" xmlns="http://uniprot.org/uniprot">
    <accession>A9BQL3</accession>
    <name>A9BQL3_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_0068</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX32715.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_0068"/>
    <dbReference type="PRIDE" id="A9BQL3"/>
    <dbReference type="EnsemblBacteria" id="ABX32715">
        <property type="protein sequence ID" value="ABX32715"/>
        <property type="gene ID" value="Daci_0068"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_0068"/>
    <dbReference type="HOGENOM" id="CLU_896362_0_0_4"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.25.40.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011990">
        <property type="entry name" value="TPR-like_helical_dom_sf"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="43"/>
            <end position="68"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Pro residues" evidence="1">
        <location>
            <begin position="54"/>
            <end position="68"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX32715.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="310" mass="33643" checksum="1578C2A242CD02FC" modified="2008-01-15" version="1">MRNSGALRPRWQVVAWACAALAFAGGLALIFFAEPAPEVRHAQVSATKPPAQASRPAAPAPETPAPPAIASVPAPVPVAPLTTPRAKAFPAVVVDASAEILYNRLARSEVTLDQAGEVAKLHKALEPCWMASLYERMALLVPPDSDPKGHAMAQRLAREQRASARPGCGQLPMDAYTRADEWTARLAVQGDPQSMMDYGGAYWTRGLEHARTDPERLAEYRRTTLIYLNALIDQGYVDALISMASIRSNPTWGEPQPAEVWAYVYADAKAKGNVSSQANLLQSIDQRVPPEGRQRARDMAQELLRRCCGG</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="68" xmlns="http://uniprot.org/uniprot">
    <accession>A9BQR0</accession>
    <name>A9BQR0_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="7">Threonine dehydratase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ordered locus">Daci_0116</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="8" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>L-serine = NH4(+) + pyruvate</text>
            <dbReference type="Rhea" id="RHEA:19169"/>
            <dbReference type="ChEBI" id="CHEBI:15361"/>
            <dbReference type="ChEBI" id="CHEBI:28938"/>
            <dbReference type="ChEBI" id="CHEBI:33384"/>
            <dbReference type="EC" id="4.3.1.17"/>
        </reaction>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="2">
            <text>L-threonine = 2-oxobutanoate + NH4(+)</text>
            <dbReference type="Rhea" id="RHEA:22108"/>
            <dbReference type="ChEBI" id="CHEBI:16763"/>
            <dbReference type="ChEBI" id="CHEBI:28938"/>
            <dbReference type="ChEBI" id="CHEBI:57926"/>
            <dbReference type="EC" id="4.3.1.19"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="3">
            <name>pyridoxal 5'-phosphate</name>
            <dbReference type="ChEBI" id="CHEBI:597326"/>
        </cofactor>
    </comment>
    <comment type="similarity">
        <text evidence="4">Belongs to the serine/threonine dehydratase family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX32762.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_0116"/>
    <dbReference type="PRIDE" id="A9BQR0"/>
    <dbReference type="EnsemblBacteria" id="ABX32762">
        <property type="protein sequence ID" value="ABX32762"/>
        <property type="gene ID" value="Daci_0116"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_0116"/>
    <dbReference type="eggNOG" id="COG1171">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_021152_4_1_4"/>
    <dbReference type="OMA" id="LIHPFDH"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003941">
        <property type="term" value="F:L-serine ammonia-lyase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004794">
        <property type="term" value="F:L-threonine ammonia-lyase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006567">
        <property type="term" value="P:threonine catabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd04886">
        <property type="entry name" value="ACT_ThrD-II-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.1100">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045865">
        <property type="entry name" value="ACT-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002912">
        <property type="entry name" value="ACT_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR044561">
        <property type="entry name" value="ACT_ThrD-II-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001926">
        <property type="entry name" value="PLP-dep"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005789">
        <property type="entry name" value="Thr_deHydtase_catblc"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036052">
        <property type="entry name" value="Trypto_synt_PLP_dependent"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13291">
        <property type="entry name" value="ACT_4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00291">
        <property type="entry name" value="PALP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53686">
        <property type="entry name" value="SSF53686"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55021">
        <property type="entry name" value="SSF55021"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01127">
        <property type="entry name" value="ilvA_1Cterm"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51671">
        <property type="entry name" value="ACT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-0663">Pyridoxal phosphate</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="ACT" evidence="6">
        <location>
            <begin position="341"/>
            <end position="415"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001161"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00001274"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00001933"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00010869"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022898"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="PROSITE" id="PS51671"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="ABX32762.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="415" mass="43827" checksum="520885AAAF799344" modified="2008-01-15" version="1">MACPAARPGRRAPQCVMLSLQDIQNAADRLRGAVLDTPCVESRTLSQITGAQVYLKFENLQFTASFKERGALNKLAQLSPEERARGVVAMSAGNHAQGVAYHAQRLGVRAVIVMPRFTPGVKVERTRGFGAEIVLHGDSLAEARQHAYTLAEQQGLCFVHPYDDEQIAAGQGTLALEMLAEQPDLDQLIVAIGGGGLIAGVATAAKGLNPGIEIIGVQTQRFPSMFNAVRQAGLPMGTSTIAEGIAVTQPGAITQEVVSRLVDDMLLVDEGDIEQAVLMLLEIEKTLVEGAGAAGLAALLRHPQHFAGKKVGLILSGGNIDPLLLAAIIGRGMVRSGRLARIKVSARDVPGVLARITATVAAAGANIEEVHHQRAFTMLAAQSVEIELVLQTRNKAHIEEVIAALQAEGMQVNAA</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2021-06-02" version="45" xmlns="http://uniprot.org/uniprot">
    <accession>A9BQW4</accession>
    <name>A9BQW4_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_0273</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX32919.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012202212.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_0273"/>
    <dbReference type="EnsemblBacteria" id="ABX32919">
        <property type="protein sequence ID" value="ABX32919"/>
        <property type="gene ID" value="Daci_0273"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_0273"/>
    <dbReference type="eggNOG" id="ENOG503315U">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_159285_3_0_4"/>
    <dbReference type="OMA" id="WAFYART"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR022109">
        <property type="entry name" value="DUF3649"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12365">
        <property type="entry name" value="DUF3649"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="23"/>
            <end position="48"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="55"/>
            <end position="75"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="81"/>
            <end position="102"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX32919.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="108" mass="11573" checksum="752F086E2A2D67DE" modified="2008-01-15" version="1">MPSPTLARTHDWFRDWFRDYGPLISRILAALFGGYAVAALASVAVLALPADRTQAAISGTLLSFAVYAGAVIWVFAVRSAWRAWAGLLVAALVLAPVAWWTWGKGLGA</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="48" xmlns="http://uniprot.org/uniprot">
    <accession>A9BR46</accession>
    <name>A9BR46_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Conserved hypothetical replication initiator and transcription repressor protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Daci_0458</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="2" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX33104.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012202390.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_0458"/>
    <dbReference type="PRIDE" id="A9BR46"/>
    <dbReference type="EnsemblBacteria" id="ABX33104">
        <property type="protein sequence ID" value="ABX33104"/>
        <property type="gene ID" value="Daci_0458"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_0458"/>
    <dbReference type="eggNOG" id="COG5534">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_050846_0_0_4"/>
    <dbReference type="OMA" id="VEPIEYR"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018777">
        <property type="entry name" value="Replication_initiator_prot_A"/>
    </dbReference>
    <dbReference type="Pfam" id="PF10134">
        <property type="entry name" value="RPA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ABX33104.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="285" mass="32369" checksum="20BB08A65DFB3EA0" modified="2008-01-15" version="1">MSSPALPSRQRLVPEREQLDLFRALPGDMAPRDSQDLMAFPFFSLAKSRRVAPIDFRASGITIRVEGTQEHGIATIWDADVLIWAASQIVEARDAGLRPSRLMQATPYEIQRFIGRGTSLRDYQRLKAALDRLQSTTVATSIRETTGRRLHRFSWINEWKELADTKGTPLGLELILPDWFYAGVMDAALVLTIDPAYFRLTGGIERWLYRLVRKHGGRQPGGWQFDFRHLYRKSGSATRFSDFAYDLRALVARQSLPGYVLGIERMPDNSAELLTFRPVPFAARG</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="52" xmlns="http://uniprot.org/uniprot">
    <accession>A9BRH5</accession>
    <name>A9BRH5_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Daci_0690</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="2" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX33336.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_0690"/>
    <dbReference type="PRIDE" id="A9BRH5"/>
    <dbReference type="EnsemblBacteria" id="ABX33336">
        <property type="protein sequence ID" value="ABX33336"/>
        <property type="gene ID" value="Daci_0690"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_0690"/>
    <dbReference type="eggNOG" id="COG1718">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_088530_0_0_4"/>
    <dbReference type="OMA" id="CYAHSTA"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011009">
        <property type="entry name" value="Kinase-like_dom_sf"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56112">
        <property type="entry name" value="SSF56112"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ABX33336.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="338" mass="36886" checksum="292A27A7005B0609" modified="2008-01-15" version="1">MVFGTAKDETIVSIFRLPGGKSTGLAAVQTLAPPPAGASGKSWHGTIAASGWRCAPATHFPEPAVSEPSFAVPPTEPPDYDAFLRAHVLSQPLSIQRYDREDETIWVKRAGASNPAWRYRALALLALCLRLPVLRPVPNPGGHEAIRTEVRRLRQLAQRGLRVPAVLAECEDGFAMRHLGSPGVEAPSLGNAMEAALPRGDGSTLALWLQGLQTLQQVHGSGDCLSQAFARNMVCCADGVIGFIDFEDDPAAHLPLALCRVRDALCYAHSTAWILEQAGAMQTARTAWRDFVQSMEPETRALMARTVKQLAWVRRLPESRRLGRDMQRVRMAYTLVTP</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="37" xmlns="http://uniprot.org/uniprot">
    <accession>A9BRI7</accession>
    <name>A9BRI7_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Daci_0702</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="2" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX33348.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012202634.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_0702"/>
    <dbReference type="PRIDE" id="A9BRI7"/>
    <dbReference type="EnsemblBacteria" id="ABX33348">
        <property type="protein sequence ID" value="ABX33348"/>
        <property type="gene ID" value="Daci_0702"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_0702"/>
    <dbReference type="eggNOG" id="COG3501">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_1105727_0_0_4"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ABX33348.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="251" mass="27369" checksum="E4331D227F163FA0" modified="2008-01-15" version="1">MSCEQLVPAFIALNRLKRSRQLCKAVVLMGFDKVCGTRDFDNELDRRALCELFCCCMTGGLGQRCVAGVVMQADGFEGYRGYYKQEVPYLNKAPVMSRREPVRPTRSRPAGSRIPDVVVVKNPRLPPVLDNVQRVYEMKFPGDKFSSDLGPDGRSQLQAYTYIFEDKFQKDALDAGSCACDSDGENANESVLNQAAQWQANREKVISLSERVNKDTAAAVGAAAGASALGRVLRGVGTVGSALARVLGLSF</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-05-25" version="81" xmlns="http://uniprot.org/uniprot">
    <accession>A9BRL8</accession>
    <name>A9BRL8_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Transcriptional regulator, LysR family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Daci_0733</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="4" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the LysR transcriptional regulatory family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX33379.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_0733"/>
    <dbReference type="EnsemblBacteria" id="ABX33379">
        <property type="protein sequence ID" value="ABX33379"/>
        <property type="gene ID" value="Daci_0733"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_0733"/>
    <dbReference type="eggNOG" id="COG0583">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_039613_37_1_4"/>
    <dbReference type="OMA" id="MWAEWFA"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003700">
        <property type="term" value="F:DNA-binding transcription factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005119">
        <property type="entry name" value="LysR_subst-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000847">
        <property type="entry name" value="Tscrpt_reg_HTH_LysR"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036390">
        <property type="entry name" value="WH_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00126">
        <property type="entry name" value="HTH_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03466">
        <property type="entry name" value="LysR_substrate"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00039">
        <property type="entry name" value="HTHLYSR"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46785">
        <property type="entry name" value="SSF46785"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50931">
        <property type="entry name" value="HTH_LYSR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HTH lysR-type" evidence="2">
        <location>
            <begin position="24"/>
            <end position="81"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00009437"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS50931"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ABX33379.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="323" mass="35138" checksum="DBB37AA0BE2EC4D7" modified="2008-01-15" version="1">MCGVSRGAAQPPGVFEELAMASIPTTAHLQAFEAVARRRSFALAASELHLTASAVSHQVAKLEAQLGVRLFERSAHGVRLSRPGQAYLERVGGALAAIVSATEDLRHSMSNSLYVHCAPSIASLWLMPRLRDFARACPHIALNLSAAHSHSDFALGQADIDIRYGIAQWPDLEVEPLFEERVLPLASPAFVAEHGLARVQQLLHVPLIQSNVSIVQWSDWFLAFTPLRAPERFAVRFDRAQMSLDAATQGLGVALESAMNAGGHIADGRLVAPFGMEQALRVKAHFAVYPTRNAHRPAVAAFLAWLHGEAARTEQQPRRHGID</sequence>
</entry>
<entry dataset="Swiss-Prot" created="2009-04-14" modified="2022-08-03" version="78" xmlns="http://uniprot.org/uniprot">
    <accession>A9BRW1</accession>
    <name>RL14_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">50S ribosomal protein L14</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="1" type="primary">rplN</name>
        <name type="ordered locus">Daci_1032</name>
    </gene>
    <organism>
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference key="1">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain>DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="1">Binds to 23S rRNA. Forms part of two intersubunit bridges in the 70S ribosome.</text>
    </comment>
    <comment type="subunit">
        <text evidence="1">Part of the 50S ribosomal subunit. Forms a cluster with proteins L3 and L19. In the 70S ribosome, L14 and L19 interact and together make contacts with the 16S rRNA in bridges B5 and B8.</text>
    </comment>
    <comment type="similarity">
        <text evidence="1">Belongs to the universal ribosomal protein uL14 family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX33678.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012202964.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A9BRW1"/>
    <dbReference type="SMR" id="A9BRW1"/>
    <dbReference type="STRING" id="398578.Daci_1032"/>
    <dbReference type="PRIDE" id="A9BRW1"/>
    <dbReference type="EnsemblBacteria" id="ABX33678">
        <property type="protein sequence ID" value="ABX33678"/>
        <property type="gene ID" value="Daci_1032"/>
    </dbReference>
    <dbReference type="GeneID" id="60685594"/>
    <dbReference type="KEGG" id="dac:Daci_1032"/>
    <dbReference type="eggNOG" id="COG0093">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_095071_2_1_4"/>
    <dbReference type="OMA" id="AKEVLCI"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015934">
        <property type="term" value="C:large ribosomal subunit"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0019843">
        <property type="term" value="F:rRNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003735">
        <property type="term" value="F:structural constituent of ribosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006412">
        <property type="term" value="P:translation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.150.20">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01367">
        <property type="entry name" value="Ribosomal_L14"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036853">
        <property type="entry name" value="Ribosomal_L14_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000218">
        <property type="entry name" value="Ribosomal_L14P"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005745">
        <property type="entry name" value="Ribosomal_L14P_bac-type"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019972">
        <property type="entry name" value="Ribosomal_L14P_CS"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11761">
        <property type="entry name" value="PTHR11761"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00238">
        <property type="entry name" value="Ribosomal_L14"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM01374">
        <property type="entry name" value="Ribosomal_L14"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50193">
        <property type="entry name" value="SSF50193"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01067">
        <property type="entry name" value="rplN_bact"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00049">
        <property type="entry name" value="RIBOSOMAL_L14"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword id="KW-1185">Reference proteome</keyword>
    <keyword id="KW-0687">Ribonucleoprotein</keyword>
    <keyword id="KW-0689">Ribosomal protein</keyword>
    <keyword id="KW-0694">RNA-binding</keyword>
    <keyword id="KW-0699">rRNA-binding</keyword>
    <feature type="chain" id="PRO_1000144255" description="50S ribosomal protein L14">
        <location>
            <begin position="1"/>
            <end position="122"/>
        </location>
    </feature>
    <evidence type="ECO:0000255" key="1">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01367"/>
        </source>
    </evidence>
    <sequence length="122" mass="13232" checksum="1F878F48576D8363" modified="2008-01-15" version="1">MIQTESRLEVADNTGAKSVQCIKVLGGSHRRYASVGDIIKVTIKEAAPRGRVKKGEVYSAVVVRTAKGIRRADGSLVKFDGNAAVLLNAKLEPIGTRIFGPVTRELRNEKFMKIVSLAPEVL</sequence>
</entry>
<entry dataset="Swiss-Prot" created="2009-04-14" modified="2022-08-03" version="72" xmlns="http://uniprot.org/uniprot">
    <accession>A9BRX4</accession>
    <name>RS4_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">30S ribosomal protein S4</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="1" type="primary">rpsD</name>
        <name type="ordered locus">Daci_1046</name>
    </gene>
    <organism>
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference key="1">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain>DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="1">One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit.</text>
    </comment>
    <comment type="function">
        <text evidence="1">With S5 and S12 plays an important role in translational accuracy.</text>
    </comment>
    <comment type="subunit">
        <text evidence="1">Part of the 30S ribosomal subunit. Contacts protein S5. The interaction surface between S4 and S5 is involved in control of translational fidelity.</text>
    </comment>
    <comment type="similarity">
        <text evidence="1">Belongs to the universal ribosomal protein uS4 family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX33691.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012202977.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A9BRX4"/>
    <dbReference type="SMR" id="A9BRX4"/>
    <dbReference type="STRING" id="398578.Daci_1046"/>
    <dbReference type="PRIDE" id="A9BRX4"/>
    <dbReference type="EnsemblBacteria" id="ABX33691">
        <property type="protein sequence ID" value="ABX33691"/>
        <property type="gene ID" value="Daci_1046"/>
    </dbReference>
    <dbReference type="GeneID" id="60685607"/>
    <dbReference type="KEGG" id="dac:Daci_1046"/>
    <dbReference type="eggNOG" id="COG0522">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_092403_0_2_4"/>
    <dbReference type="OMA" id="NVVFRMG"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015935">
        <property type="term" value="C:small ribosomal subunit"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0019843">
        <property type="term" value="F:rRNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003735">
        <property type="term" value="F:structural constituent of ribosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006412">
        <property type="term" value="P:translation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd00165">
        <property type="entry name" value="S4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.10.290.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01306_B">
        <property type="entry name" value="Ribosomal_S4_B"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR022801">
        <property type="entry name" value="Ribosomal_S4/S9"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001912">
        <property type="entry name" value="Ribosomal_S4/S9_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005709">
        <property type="entry name" value="Ribosomal_S4_bac-type"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018079">
        <property type="entry name" value="Ribosomal_S4_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002942">
        <property type="entry name" value="S4_RNA-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036986">
        <property type="entry name" value="S4_RNA-bd_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11831">
        <property type="entry name" value="PTHR11831"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11831:SF4">
        <property type="entry name" value="PTHR11831:SF4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00163">
        <property type="entry name" value="Ribosomal_S4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01479">
        <property type="entry name" value="S4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM01390">
        <property type="entry name" value="Ribosomal_S4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00363">
        <property type="entry name" value="S4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01017">
        <property type="entry name" value="rpsD_bact"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00632">
        <property type="entry name" value="RIBOSOMAL_S4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50889">
        <property type="entry name" value="S4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword id="KW-1185">Reference proteome</keyword>
    <keyword id="KW-0687">Ribonucleoprotein</keyword>
    <keyword id="KW-0689">Ribosomal protein</keyword>
    <keyword id="KW-0694">RNA-binding</keyword>
    <keyword id="KW-0699">rRNA-binding</keyword>
    <feature type="chain" id="PRO_1000140717" description="30S ribosomal protein S4">
        <location>
            <begin position="1"/>
            <end position="207"/>
        </location>
    </feature>
    <feature type="domain" description="S4 RNA-binding" evidence="1">
        <location>
            <begin position="97"/>
            <end position="157"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="30"/>
            <end position="53"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="2">
        <location>
            <begin position="39"/>
            <end position="53"/>
        </location>
    </feature>
    <evidence type="ECO:0000255" key="1">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01306"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <sequence length="207" mass="23205" checksum="271A8F086AA1B4C0" modified="2008-01-15" version="1">MARYIGPKAKLSRREGTDLFLKSARRSIADKSKFDTKPGQHGRTSGQRTSDFGLQLREKQKVKRMYGVLEKQFRRYFEAADKKKGNTGANLLSLLESRLDNVVYRMGFGSTRSEARQLVSHKAITVNGQSVNIPSYMVKVGDVVAVREKSKKQARIVEALQLAGQVGFPAWVEVSADKAEGTFKKSPDRDEFGADINESLIVELYSR</sequence>
</entry>
<entry dataset="Swiss-Prot" created="2009-03-24" modified="2022-08-03" version="78" xmlns="http://uniprot.org/uniprot">
    <accession>A9BS67</accession>
    <name>FMT_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Methionyl-tRNA formyltransferase</fullName>
            <ecNumber evidence="1">2.1.2.9</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="1" type="primary">fmt</name>
        <name type="ordered locus">Daci_0831</name>
    </gene>
    <organism>
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference key="1">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain>DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="1">Attaches a formyl group to the free amino group of methionyl-tRNA(fMet). The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and preventing the misappropriation of this tRNA by the elongation apparatus.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>(6S)-10-formyltetrahydrofolate + L-methionyl-tRNA(fMet) = (6S)-5,6,7,8-tetrahydrofolate + H(+) + N-formyl-L-methionyl-tRNA(fMet)</text>
            <dbReference type="Rhea" id="RHEA:24380"/>
            <dbReference type="Rhea" id="RHEA-COMP:9952"/>
            <dbReference type="Rhea" id="RHEA-COMP:9953"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:57453"/>
            <dbReference type="ChEBI" id="CHEBI:57454"/>
            <dbReference type="ChEBI" id="CHEBI:78530"/>
            <dbReference type="ChEBI" id="CHEBI:78844"/>
            <dbReference type="EC" id="2.1.2.9"/>
        </reaction>
    </comment>
    <comment type="similarity">
        <text evidence="1">Belongs to the Fmt family.</text>
    </comment>
    <dbReference type="EC" id="2.1.2.9" evidence="1"/>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX33477.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012202763.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A9BS67"/>
    <dbReference type="SMR" id="A9BS67"/>
    <dbReference type="STRING" id="398578.Daci_0831"/>
    <dbReference type="PRIDE" id="A9BS67"/>
    <dbReference type="EnsemblBacteria" id="ABX33477">
        <property type="protein sequence ID" value="ABX33477"/>
        <property type="gene ID" value="Daci_0831"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_0831"/>
    <dbReference type="eggNOG" id="COG0223">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_033347_1_2_4"/>
    <dbReference type="OMA" id="CCPVVAY"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004479">
        <property type="term" value="F:methionyl-tRNA formyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd08646">
        <property type="entry name" value="FMT_core_Met-tRNA-FMT_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="CDD" id="cd08704">
        <property type="entry name" value="Met_tRNA_FMT_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00182">
        <property type="entry name" value="Formyl_trans"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005794">
        <property type="entry name" value="Fmt"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005793">
        <property type="entry name" value="Formyl_trans_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002376">
        <property type="entry name" value="Formyl_transf_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036477">
        <property type="entry name" value="Formyl_transf_N_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011034">
        <property type="entry name" value="Formyl_transferase-like_C_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR044135">
        <property type="entry name" value="Met-tRNA-FMT_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041711">
        <property type="entry name" value="Met-tRNA-FMT_N"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02911">
        <property type="entry name" value="Formyl_trans_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00551">
        <property type="entry name" value="Formyl_trans_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50486">
        <property type="entry name" value="SSF50486"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53328">
        <property type="entry name" value="SSF53328"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00460">
        <property type="entry name" value="fmt"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword id="KW-0648">Protein biosynthesis</keyword>
    <keyword id="KW-1185">Reference proteome</keyword>
    <keyword id="KW-0808">Transferase</keyword>
    <feature type="chain" id="PRO_1000098398" description="Methionyl-tRNA formyltransferase">
        <location>
            <begin position="1"/>
            <end position="327"/>
        </location>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <begin position="117"/>
            <end position="120"/>
        </location>
        <ligand>
            <name>(6S)-5,6,7,8-tetrahydrofolate</name>
            <dbReference type="ChEBI" id="CHEBI:57453"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000255" key="1">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00182"/>
        </source>
    </evidence>
    <sequence length="327" mass="34203" checksum="9F36646949D93B77" modified="2008-01-15" version="1">MRVIFAGTPEFARVALERLLAAGFTVPLVLTQPDRPAGRGMKLQASPVKQCALEHGIAVAQPRSLRLDGKYPEEAAAARAAIEAAQADVMVVAAYGLILPQWVLDTPPRGCLNIHASLLPRWRGAAPIHRAIEAGDAETGVTIMQMDAGLDTGDMCLVERLPITADDTTASLHDKLADLGGRLIVEALEMSACGGLPRTPQPAEGVNYAHKIEKAESQIDWRQDAEAIARRLRAFNPFPGGATQYGDESIKVWEAHADPAIAVGTAAPGTVLSAGADGVRVACGNGVLCMTLLQRAGGKRLAAGDFLRGFDLPEGAVLDGAASGGTP</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="84" xmlns="http://uniprot.org/uniprot">
    <accession>A9BSB3</accession>
    <name>A9BSB3_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Transcriptional regulator, LysR family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Daci_1082</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="4" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the LysR transcriptional regulatory family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX33727.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012203013.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_1082"/>
    <dbReference type="PRIDE" id="A9BSB3"/>
    <dbReference type="EnsemblBacteria" id="ABX33727">
        <property type="protein sequence ID" value="ABX33727"/>
        <property type="gene ID" value="Daci_1082"/>
    </dbReference>
    <dbReference type="GeneID" id="60685643"/>
    <dbReference type="KEGG" id="dac:Daci_1082"/>
    <dbReference type="eggNOG" id="COG0583">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_039613_37_0_4"/>
    <dbReference type="OMA" id="YADMEHV"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003700">
        <property type="term" value="F:DNA-binding transcription factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005119">
        <property type="entry name" value="LysR_subst-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000847">
        <property type="entry name" value="Tscrpt_reg_HTH_LysR"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036390">
        <property type="entry name" value="WH_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00126">
        <property type="entry name" value="HTH_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03466">
        <property type="entry name" value="LysR_substrate"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46785">
        <property type="entry name" value="SSF46785"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50931">
        <property type="entry name" value="HTH_LYSR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HTH lysR-type" evidence="2">
        <location>
            <begin position="23"/>
            <end position="78"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00009437"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS50931"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ABX33727.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="307" mass="33847" checksum="F9D0FD64E40C880A" modified="2008-01-15" version="1">MANVTLAAGSGFAPPGSGARRIPPIQCLLTFEALARLRSVTQTAEELCVTPSAVSHRVRQLEQILGTRLFGRSDFSLTTEGSAYLSHVREGLGALQRFPGEVTAPGRRRLKLAVTPTFARVILIPRLRQFTETYPEIDIALQVSIPLLDVVAEDADLMVRFGPGHYADVEHIELARDVVTPLASPAFIREHGPFEQPQDLEGMPLLRSPLEPWRTWFGATGLDWPEPHEGSQFNDIGLMCDAASAGMGIALVRHKLGAPWLDNGTLVRLFDVDTASPHAHYLCWRTGTMDRWECAAFAEWLKRAMAC</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="61" xmlns="http://uniprot.org/uniprot">
    <accession>A9BSC0</accession>
    <name>A9BSC0_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Outer membrane efflux protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ordered locus">Daci_1089</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="6" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the outer membrane factor (OMF) (TC 1.B.17) family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX33734.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012203020.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_1089"/>
    <dbReference type="PRIDE" id="A9BSC0"/>
    <dbReference type="EnsemblBacteria" id="ABX33734">
        <property type="protein sequence ID" value="ABX33734"/>
        <property type="gene ID" value="Daci_1089"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_1089"/>
    <dbReference type="eggNOG" id="COG1538">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_012817_14_3_4"/>
    <dbReference type="OMA" id="YRWQLAD"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015562">
        <property type="term" value="F:efflux transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003423">
        <property type="entry name" value="OMP_efflux"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02321">
        <property type="entry name" value="OEP"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="4">
        <location>
            <begin position="1"/>
            <end position="40"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5002735039" evidence="4">
        <location>
            <begin position="41"/>
            <end position="444"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="3">
        <location>
            <begin position="91"/>
            <end position="113"/>
        </location>
    </feature>
    <feature type="coiled-coil region" evidence="2">
        <location>
            <begin position="353"/>
            <end position="380"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00007613"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="ABX33734.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="444" mass="47501" checksum="8C5D269452B880AF" modified="2008-01-15" version="1">MSFPSSFPSRTASHAPWSAWPGPRALLVMAVLTACGAVQAGEPADAAAPSAAAVSESTPAGPPLDLQQALALALDGNPGLRAARRALEASDGAVLQSRARPNPELAWSQEDTRRSTRTLTVQLNQTLEVGGKREARMRVAERGRDLAQAELARAEAALRADVGTAFFGVLAAQQRVVLAGQTLEIASSAREAAARRVAAGKVAPLEETRARVAESGARLEQAQARSGLRVARGQLQALWGERVRPFGQAEGAVDALPQLPELAALQQRIEQAPAVLRARQALEQSRATADLERARRLPDPTVSLGVKRATEVGRNQLVVGVSVPLPVLDSNRGNQLQALRLADQAEEQLLATRVQLQAQLFEARELLQASREQARQLAEEVLPTARTAYELASRGFALGKFGYLDVLDAQRTWSEARSQYLDQLLATHRAAADIDRLLGTESGL</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="54" xmlns="http://uniprot.org/uniprot">
    <accession>A9BSI4</accession>
    <name>A9BSI4_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Putative phenylacetate-CoA ligase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Daci_1153</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="4" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX33798.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012203084.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_1153"/>
    <dbReference type="PRIDE" id="A9BSI4"/>
    <dbReference type="EnsemblBacteria" id="ABX33798">
        <property type="protein sequence ID" value="ABX33798"/>
        <property type="gene ID" value="Daci_1153"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_1153"/>
    <dbReference type="eggNOG" id="COG1541">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_035301_1_3_4"/>
    <dbReference type="OMA" id="GMFVRPE"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016874">
        <property type="term" value="F:ligase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.300.30">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.12780">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045851">
        <property type="entry name" value="AMP-bd_C_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR028154">
        <property type="entry name" value="AMP-dep_Lig_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000873">
        <property type="entry name" value="AMP-dep_Synth/Lig"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR042099">
        <property type="entry name" value="ANL_N_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00501">
        <property type="entry name" value="AMP-binding"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF14535">
        <property type="entry name" value="AMP-binding_C_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-0436">Ligase</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="AMP-binding" evidence="1">
        <location>
            <begin position="127"/>
            <end position="280"/>
        </location>
    </feature>
    <feature type="domain" description="AMP-binding_C_2" evidence="2">
        <location>
            <begin position="328"/>
            <end position="404"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF00501"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF14535"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ABX33798.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="415" mass="45088" checksum="6679D626B411AF4E" modified="2008-01-15" version="1">MSAFYDALETRTPDEREAALLSALPRQIAHAQQHSAAFAQILAGVDAAQITSREALARLPVTRKYELLQRQAEQRPAQIFGGFNAIGLGQPMPRLFCSPGPIYEPESRRPDYWRMARALHASGFRPGELVHNCFSYHFVPAGSMMESGAHALGCTVFAGGTGQTEQQVQAMADLRPAGYVGTPSFLKIIVEKSLEMGLPIPSVTKAMVSGEAFPPSLRDWLAERGIAGYQCYATADLGLIAYETEAREGLVLDEQVIVEIVRPGTGDPVAPGEVGELVITTFNPDYPLIRFGTGDLSAVLPGQCPTGRTNARIKGWMGRADQTTKVRGMFVHPGQIADVVRRFPQVGRARLVVTGEMANDQMQLLVETRETSPGLAQQLSDAVREVTKLRGDVQMVLPGTLPNDGKVIEDARSYK</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="73" xmlns="http://uniprot.org/uniprot">
    <accession>A9BSN5</accession>
    <name>A9BSN5_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="8">Acyl-CoA dehydrogenase domain protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="8" type="ordered locus">Daci_1396</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="9" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>FAD</name>
            <dbReference type="ChEBI" id="CHEBI:57692"/>
        </cofactor>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the acyl-CoA dehydrogenase family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX34040.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012203326.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_1396"/>
    <dbReference type="PRIDE" id="A9BSN5"/>
    <dbReference type="EnsemblBacteria" id="ABX34040">
        <property type="protein sequence ID" value="ABX34040"/>
        <property type="gene ID" value="Daci_1396"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_1396"/>
    <dbReference type="eggNOG" id="COG1960">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_018204_5_2_4"/>
    <dbReference type="OMA" id="GWSRDVW"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0050660">
        <property type="term" value="F:flavin adenine dinucleotide binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016627">
        <property type="term" value="F:oxidoreductase activity, acting on the CH-CH group of donors"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.540.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.110.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006091">
        <property type="entry name" value="Acyl-CoA_Oxase/DH_mid-dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR046373">
        <property type="entry name" value="Acyl-CoA_Oxase/DH_mid-dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036250">
        <property type="entry name" value="AcylCo_DH-like_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009075">
        <property type="entry name" value="AcylCo_DH/oxidase_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013786">
        <property type="entry name" value="AcylCoA_DH/ox_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037069">
        <property type="entry name" value="AcylCoA_DH/ox_N_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009100">
        <property type="entry name" value="AcylCoA_DH/oxidase_NM_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00441">
        <property type="entry name" value="Acyl-CoA_dh_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02770">
        <property type="entry name" value="Acyl-CoA_dh_M"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02771">
        <property type="entry name" value="Acyl-CoA_dh_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47203">
        <property type="entry name" value="SSF47203"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56645">
        <property type="entry name" value="SSF56645"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-0274">FAD</keyword>
    <keyword evidence="3" id="KW-0285">Flavoprotein</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Acyl-CoA_dh_N" evidence="7">
        <location>
            <begin position="6"/>
            <end position="108"/>
        </location>
    </feature>
    <feature type="domain" description="Acyl-CoA_dh_M" evidence="6">
        <location>
            <begin position="122"/>
            <end position="212"/>
        </location>
    </feature>
    <feature type="domain" description="Acyl-CoA_dh_1" evidence="5">
        <location>
            <begin position="240"/>
            <end position="353"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001974"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00009347"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022630"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022827"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="Pfam" id="PF00441"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="Pfam" id="PF02770"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="Pfam" id="PF02771"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="ABX34040.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="378" mass="40106" checksum="774CC3A1B358C96D" modified="2008-01-15" version="1">MNFEHTEDRRMLADSLNRFVSEQYAIEARNHVAYGEEGHSPLLYGQFADIGAIGALFPEDAGGFGGQGFDISVVFECLGRGLVAEPLLGALVVGQALIAAGSDAQKEQLAAIIGGTSIAALAHDEPGSHYELNNVATTAVRSGDGWVLNGAKGVVAFGEKADLLLVSARTSGSQYDEAGISLFLVPGNAAGIQKRGYNRIEGGRAAELVLDKVQVGADALLGEEGQGLSLLERISGYAVLALTAEAVGAMDVAKDQTLEYLRTRKQFGVPIGSFQALQHRMADLLLEVEQARSAVINAAAAIADEDRVAREKALSAAKYSIGRIGTLVAEESIQMHGGIGMTWELPLAHYAKRLVMIDHQFGDEDHHLSRYIALGSQH</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="54" xmlns="http://uniprot.org/uniprot">
    <accession>A9BSU2</accession>
    <name>A9BSU2_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Daci_1659</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="2" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX34302.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012203587.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_1659"/>
    <dbReference type="PRIDE" id="A9BSU2"/>
    <dbReference type="EnsemblBacteria" id="ABX34302">
        <property type="protein sequence ID" value="ABX34302"/>
        <property type="gene ID" value="Daci_1659"/>
    </dbReference>
    <dbReference type="GeneID" id="60686148"/>
    <dbReference type="KEGG" id="dac:Daci_1659"/>
    <dbReference type="eggNOG" id="COG3825">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_059555_0_0_4"/>
    <dbReference type="OMA" id="VWDKREF"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ABX34302.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="395" mass="45850" checksum="48CE4D869AEB94A5" modified="2008-01-15" version="1">MLIDFFYTMRAAKLPVSVKEFLTLLEALQAGVVGPKSDDAWSLDDFYHLGRTVLVKDEKHYDKYDRAFAAYFKGVEMVADLTREIPQDWLKKLLERELSPEEKAAIEAMGWDELMETLKKRLEEQKERHEGGNKWIGTGGTSPFGHGGYNPAGVRIGGPGRNKSAVKVWEQRAYRDYDDTQELGTRNIKVALRRLRKFAREGGELELDLPDTIRSTAANAGYLDIKMIPERHNNVKVLLLMDVGGTMDEHVQRVEELFSAVKSEFKHLEFYYFHNCVYDFMWKNNRRRFAEKFPTWDIIRKYNKDYKLIFVGDATMSPYEILQPGGSVEYMNEEPGAEWLQRLTHAFPRFAWINPEPPGVWQYRQSISIIQQLTGNRMYPLTLKGLEDAMRLLSK</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="73" xmlns="http://uniprot.org/uniprot">
    <accession>A9BSV3</accession>
    <name>A9BSV3_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="4">tRNA (cytidine(34)-2'-O)-methyltransferase</fullName>
            <ecNumber evidence="4">2.1.1.207</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="4">tRNA (cytidine/uridine-2'-O-)-methyltransferase TrmL</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="4" type="primary">trmL</name>
        <name evidence="7" type="ordered locus">Daci_1670</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="8" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="4">Methylates the ribose at the nucleotide 34 wobble position in the two leucyl isoacceptors tRNA(Leu)(CmAA) and tRNA(Leu)(cmnm5UmAA). Catalyzes the methyl transfer from S-adenosyl-L-methionine to the 2'-OH of the wobble nucleotide.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="4">
            <text>5-carboxymethylaminomethyluridine(34) in tRNA(Leu) + S-adenosyl-L-methionine = 5-carboxymethylaminomethyl-2'-O-methyluridine(34) in tRNA(Leu) + H(+) + S-adenosyl-L-homocysteine</text>
            <dbReference type="Rhea" id="RHEA:43088"/>
            <dbReference type="Rhea" id="RHEA-COMP:10333"/>
            <dbReference type="Rhea" id="RHEA-COMP:10334"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:57856"/>
            <dbReference type="ChEBI" id="CHEBI:59789"/>
            <dbReference type="ChEBI" id="CHEBI:74508"/>
            <dbReference type="ChEBI" id="CHEBI:74511"/>
            <dbReference type="EC" id="2.1.1.207"/>
        </reaction>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="4">
            <text>cytidine(34) in tRNA + S-adenosyl-L-methionine = 2'-O-methylcytidine(34) in tRNA + H(+) + S-adenosyl-L-homocysteine</text>
            <dbReference type="Rhea" id="RHEA:43084"/>
            <dbReference type="Rhea" id="RHEA-COMP:10331"/>
            <dbReference type="Rhea" id="RHEA-COMP:10332"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:57856"/>
            <dbReference type="ChEBI" id="CHEBI:59789"/>
            <dbReference type="ChEBI" id="CHEBI:74495"/>
            <dbReference type="ChEBI" id="CHEBI:82748"/>
            <dbReference type="EC" id="2.1.1.207"/>
        </reaction>
    </comment>
    <comment type="subunit">
        <text evidence="4">Homodimer.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="4">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="4">Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family. TrmL subfamily.</text>
    </comment>
    <dbReference type="EC" id="2.1.1.207" evidence="4"/>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX34313.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012203598.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_1670"/>
    <dbReference type="PRIDE" id="A9BSV3"/>
    <dbReference type="EnsemblBacteria" id="ABX34313">
        <property type="protein sequence ID" value="ABX34313"/>
        <property type="gene ID" value="Daci_1670"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_1670"/>
    <dbReference type="eggNOG" id="COG0219">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_110125_1_0_4"/>
    <dbReference type="OMA" id="AGLDYWH"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003723">
        <property type="term" value="F:RNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008757">
        <property type="term" value="F:S-adenosylmethionine-dependent methyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008175">
        <property type="term" value="F:tRNA methyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd18094">
        <property type="entry name" value="SpoU-like_TrmL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.1280.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01885">
        <property type="entry name" value="tRNA_methyltr_TrmL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029028">
        <property type="entry name" value="Alpha/beta_knot_MTases"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001537">
        <property type="entry name" value="SpoU_MeTrfase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016914">
        <property type="entry name" value="tRNA_cyt/urid_MeTfrase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029026">
        <property type="entry name" value="tRNA_m1G_MTases_N"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR42971">
        <property type="entry name" value="PTHR42971"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00588">
        <property type="entry name" value="SpoU_methylase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF029256">
        <property type="entry name" value="SpoU_TrmH_prd"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF75217">
        <property type="entry name" value="SSF75217"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00185">
        <property type="entry name" value="tRNA_yibK_trmL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="1 4" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="2 4 7" id="KW-0489">Methyltransferase</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4 5" id="KW-0949">S-adenosyl-L-methionine</keyword>
    <keyword evidence="3 4 7" id="KW-0808">Transferase</keyword>
    <keyword evidence="4" id="KW-0819">tRNA processing</keyword>
    <feature type="domain" description="SpoU_methylase" evidence="6">
        <location>
            <begin position="2"/>
            <end position="143"/>
        </location>
    </feature>
    <feature type="binding site" evidence="4 5">
        <location>
            <position position="80"/>
        </location>
        <ligand>
            <name>S-adenosyl-L-methionine</name>
            <dbReference type="ChEBI" id="CHEBI:59789"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="4 5">
        <location>
            <position position="102"/>
        </location>
        <ligand>
            <name>S-adenosyl-L-methionine</name>
            <dbReference type="ChEBI" id="CHEBI:59789"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="4 5">
        <location>
            <position position="124"/>
        </location>
        <ligand>
            <name>S-adenosyl-L-methionine</name>
            <dbReference type="ChEBI" id="CHEBI:59789"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="4 5">
        <location>
            <position position="132"/>
        </location>
        <ligand>
            <name>S-adenosyl-L-methionine</name>
            <dbReference type="ChEBI" id="CHEBI:59789"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022490"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022603"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01885"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="PIRSR" id="PIRSR029256-1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="Pfam" id="PF00588"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="ABX34313.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="165" mass="18312" checksum="9CA1CDA1EC3E930B" modified="2008-01-15" version="1">MFHIVLVAPEIPPNTGNVIRLAANTGCSLHLIEPLGFSMEDRLMRRAGLDYHEYAPVRRHADWQAFLQDCQPDRQRMFAMTTHSSSPAHAIGFQPGDWLVFGSESKGLPAEVREQFPPQQRLRLPMLPQQRSLNLSNAVAVTVFEAWRQHQFAGAALAEGAAGAA</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="63" xmlns="http://uniprot.org/uniprot">
    <accession>A9BTA5</accession>
    <name>A9BTA5_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">Non-specific serine/threonine protein kinase</fullName>
            <ecNumber evidence="3">2.7.11.1</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="5" type="ordered locus">Daci_2030</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="6" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="2">
            <text>ATP + L-seryl-[protein] = ADP + H(+) + O-phospho-L-seryl-[protein]</text>
            <dbReference type="Rhea" id="RHEA:17989"/>
            <dbReference type="Rhea" id="RHEA-COMP:9863"/>
            <dbReference type="Rhea" id="RHEA-COMP:11604"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:29999"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:83421"/>
            <dbReference type="ChEBI" id="CHEBI:456216"/>
            <dbReference type="EC" id="2.7.11.1"/>
        </reaction>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>ATP + L-threonyl-[protein] = ADP + H(+) + O-phospho-L-threonyl-[protein]</text>
            <dbReference type="Rhea" id="RHEA:46608"/>
            <dbReference type="Rhea" id="RHEA-COMP:11060"/>
            <dbReference type="Rhea" id="RHEA-COMP:11605"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:30013"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:61977"/>
            <dbReference type="ChEBI" id="CHEBI:456216"/>
            <dbReference type="EC" id="2.7.11.1"/>
        </reaction>
    </comment>
    <dbReference type="EC" id="2.7.11.1" evidence="3"/>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX34670.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012203955.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_2030"/>
    <dbReference type="PRIDE" id="A9BTA5"/>
    <dbReference type="EnsemblBacteria" id="ABX34670">
        <property type="protein sequence ID" value="ABX34670"/>
        <property type="gene ID" value="Daci_2030"/>
    </dbReference>
    <dbReference type="GeneID" id="60686430"/>
    <dbReference type="KEGG" id="dac:Daci_2030"/>
    <dbReference type="eggNOG" id="COG0515">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_000288_63_44_4"/>
    <dbReference type="OMA" id="MGPWTDI"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004674">
        <property type="term" value="F:protein serine/threonine kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006468">
        <property type="term" value="P:protein phosphorylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011009">
        <property type="entry name" value="Kinase-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000719">
        <property type="entry name" value="Prot_kinase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008271">
        <property type="entry name" value="Ser/Thr_kinase_AS"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00069">
        <property type="entry name" value="Pkinase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00220">
        <property type="entry name" value="S_TKc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56112">
        <property type="entry name" value="SSF56112"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50011">
        <property type="entry name" value="PROTEIN_KINASE_DOM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00108">
        <property type="entry name" value="PROTEIN_KINASE_ST"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="5" id="KW-0418">Kinase</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="5" id="KW-0723">Serine/threonine-protein kinase</keyword>
    <keyword evidence="5" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Protein kinase" evidence="4">
        <location>
            <begin position="19"/>
            <end position="294"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00000775"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00001433"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00012513"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="PROSITE" id="PS50011"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="ABX34670.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="343" mass="38249" checksum="ABA9F823F110F7D4" modified="2008-01-15" version="1">MSSKIKPAPLPPGSTIGGYRVVRRLASGGFGVVYLALDAEGKQVAIKEYLPASLATRAPGELQPAVAPEKLSLYRLGLKSFFEEGRSLAQISHASVVSVLNFFRENETVYMVMNYLEGATLQDFVVTARELKAEKVFRESTIRSLFDEVLRGLRIVHQHKMLHLDIKPANIFITNDDRAVMIDFGAAREVLSKEGNFIRPMYTPGFAAPEMYRRDASLGPWTDIYAIGACIYACMQGFPPNEAPQRQDKDRLTLALTKLRGVYSDNLIEVVEWCMAMDPGSRPQSVFALQKELSREGERRYTKLSVSERMRLQLDTLVTDAKKNMQKISGAAGLPAVGQERKP</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="36" xmlns="http://uniprot.org/uniprot">
    <accession>A9BTC4</accession>
    <name>A9BTC4_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Daci_2049</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="2" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX34689.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_2049"/>
    <dbReference type="PRIDE" id="A9BTC4"/>
    <dbReference type="EnsemblBacteria" id="ABX34689">
        <property type="protein sequence ID" value="ABX34689"/>
        <property type="gene ID" value="Daci_2049"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_2049"/>
    <dbReference type="HOGENOM" id="CLU_134928_0_0_4"/>
    <dbReference type="OMA" id="KTTILAC"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ABX34689.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="168" mass="18510" checksum="48BC1B9676A36EE3" modified="2008-01-15" version="1">MVAIVVSKPKTTILACLPFYEFRRDAHRRFNEHRRMPHHPDPSSAASATPRLDDLAIDAVLHMGAALDVLDLHARHNITAINCVCRDLLRIYYVKADQAQSLEPQDKELLGLLHDTAVNLGYAIEVVDHLNGDEADDPILYAVSYLLKAAKRFADEGVAVGLACGACI</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="63" xmlns="http://uniprot.org/uniprot">
    <accession>A9BTE2</accession>
    <name>A9BTE2_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Acetoacetyl-CoA synthase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Daci_2270</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="4" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX34910.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_2270"/>
    <dbReference type="PRIDE" id="A9BTE2"/>
    <dbReference type="EnsemblBacteria" id="ABX34910">
        <property type="protein sequence ID" value="ABX34910"/>
        <property type="gene ID" value="Daci_2270"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_2270"/>
    <dbReference type="eggNOG" id="COG0365">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_000022_3_3_4"/>
    <dbReference type="OMA" id="RFDNVWT"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030729">
        <property type="term" value="F:acetoacetate-CoA ligase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006629">
        <property type="term" value="P:lipid metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.300.30">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.12780">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005914">
        <property type="entry name" value="Acac_CoA_synth"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR032387">
        <property type="entry name" value="ACAS_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045851">
        <property type="entry name" value="AMP-bd_C_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020845">
        <property type="entry name" value="AMP-binding_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000873">
        <property type="entry name" value="AMP-dep_Synth/Lig"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR042099">
        <property type="entry name" value="ANL_N_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF16177">
        <property type="entry name" value="ACAS_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00501">
        <property type="entry name" value="AMP-binding"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01217">
        <property type="entry name" value="ac_ac_CoA_syn"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00455">
        <property type="entry name" value="AMP_BINDING"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="ACAS_N" evidence="2">
        <location>
            <begin position="32"/>
            <end position="87"/>
        </location>
    </feature>
    <feature type="domain" description="AMP-binding" evidence="1">
        <location>
            <begin position="95"/>
            <end position="523"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF00501"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF16177"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ABX34910.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="654" mass="72380" checksum="A42D14BE616B43B1" modified="2008-01-15" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="76" xmlns="http://uniprot.org/uniprot">
    <accession>A9BTM3</accession>
    <name>A9BTM3_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="3">FAD-dependent pyridine nucleotide-disulphide oxidoreductase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Daci_2353</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="4" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX34991.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012204273.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_2353"/>
    <dbReference type="PRIDE" id="A9BTM3"/>
    <dbReference type="EnsemblBacteria" id="ABX34991">
        <property type="protein sequence ID" value="ABX34991"/>
        <property type="gene ID" value="Daci_2353"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_2353"/>
    <dbReference type="eggNOG" id="COG0446">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_003291_4_0_4"/>
    <dbReference type="OMA" id="VMEVASY"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0050660">
        <property type="term" value="F:flavin adenine dinucleotide binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016491">
        <property type="term" value="F:oxidoreductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.390.30">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.50.50.60">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036188">
        <property type="entry name" value="FAD/NAD-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023753">
        <property type="entry name" value="FAD/NAD-binding_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016156">
        <property type="entry name" value="FAD/NAD-linked_Rdtase_dimer_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR028202">
        <property type="entry name" value="Reductase_C"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07992">
        <property type="entry name" value="Pyr_redox_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF14759">
        <property type="entry name" value="Reductase_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51905">
        <property type="entry name" value="SSF51905"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55424">
        <property type="entry name" value="SSF55424"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Pyr_redox_2" evidence="1">
        <location>
            <begin position="11"/>
            <end position="309"/>
        </location>
    </feature>
    <feature type="domain" description="Reductase_C" evidence="2">
        <location>
            <begin position="328"/>
            <end position="398"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF07992"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF14759"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ABX34991.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="411" mass="42912" checksum="864BCFC08C2F10A8" modified="2008-01-15" version="1">MTPARHPQGHAVIIGAGHAGGTLAALLRQYGHAGPITLVDGEDLPPYQCPPLSRAWLQQAMDPEELLPRPAGAYADQAITLRPGMRAMAIEPGSRQVALNDGSALHYDHLVIATGAAPRWLALPGGDRPGVTCLRTMEDAQALRGHLQTARRLAIIGGGYVGLEVASTARKLGVQVRIIEREGRLLSRSASPQMAAHLHGLHAGQGVEVHFNTSVTAIRGDSPTGITGLRMADGSRLECDAVLIGVGAAPCVELAQPLGLDCADGIAVDGEGRTAMAGIYAIGHATRRPLAGYPGLHRLESVPSALEQARRAACAITGRALPAHEAPWFWSDQYDTKLQIAGLPGHGDQTVLRGNPASGRFAVLHLRGGQLCAAECVNSPGEFMAARKAIAATHCADPGFPPLPPKAPPTP</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="39" xmlns="http://uniprot.org/uniprot">
    <accession>A9BTV9</accession>
    <name>A9BTV9_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_2735</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX35373.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="PRIDE" id="A9BTV9"/>
    <dbReference type="EnsemblBacteria" id="ABX35373">
        <property type="protein sequence ID" value="ABX35373"/>
        <property type="gene ID" value="Daci_2735"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_2735"/>
    <dbReference type="eggNOG" id="ENOG50347E8">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_170929_0_0_4"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="22"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="60"/>
            <end position="87"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX35373.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="87" mass="10176" checksum="4BCE31D2560302C0" modified="2008-01-15" version="1">MDSYPPSHRQNGNGMDIRALQDDELMAQARDWRQRALRGEKDARGLAHELECEVRRRFPRNNAPHALPPIQLLGAVPQTPQRRWKPW</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="46" xmlns="http://uniprot.org/uniprot">
    <accession>A9BTW7</accession>
    <name>A9BTW7_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_2743</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX35381.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_003056223.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_2743"/>
    <dbReference type="PRIDE" id="A9BTW7"/>
    <dbReference type="EnsemblBacteria" id="ABX35381">
        <property type="protein sequence ID" value="ABX35381"/>
        <property type="gene ID" value="Daci_2743"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_2743"/>
    <dbReference type="eggNOG" id="ENOG502Z8ED">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_093433_0_0_4"/>
    <dbReference type="OMA" id="GFRRNLW"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="18"/>
            <end position="38"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="44"/>
            <end position="63"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="168"/>
            <end position="190"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="202"/>
            <end position="224"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX35381.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="262" mass="28626" checksum="6CB375477613ED53" modified="2008-01-15" version="1">MTTIFELVKDPYERKARVIPGLLVALPVLVPLLCVYGARHPVLTGVIGLLGGCGAIYALASVARGRGKKLEEMLVSKWGGMPTTIALRHRDKFLDGVSKQRYHTAITAKLGIAMPTAEEESANPDKADDIYIGATKRLRELTRSNKQLLLKENIAYGFHRNMLAMKPVGILSCLMGVVYGLLIAKILQVAPLQFDLVHLADPGLAAGLTLLISLALLAAWLLYFDQDAVRRMGFVYAERLFECLPSLPSSSSRKKAVKPTTD</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-01-19" version="63" xmlns="http://uniprot.org/uniprot">
    <accession>A9BU61</accession>
    <name>A9BU61_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="1">L-carnitine dehydratase/bile acid-inducible protein F</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Daci_3138</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="2" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX35776.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012204977.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_3138"/>
    <dbReference type="EnsemblBacteria" id="ABX35776">
        <property type="protein sequence ID" value="ABX35776"/>
        <property type="gene ID" value="Daci_3138"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_3138"/>
    <dbReference type="eggNOG" id="COG1804">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_033975_2_1_4"/>
    <dbReference type="OMA" id="GLSYMTG"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003824">
        <property type="term" value="F:catalytic activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.1540.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.10540">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003673">
        <property type="entry name" value="CoA-Trfase_fam_III"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR044855">
        <property type="entry name" value="CoA-Trfase_III_dom3_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023606">
        <property type="entry name" value="CoA-Trfase_III_dom_1_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02515">
        <property type="entry name" value="CoA_transf_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF89796">
        <property type="entry name" value="SSF89796"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ABX35776.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="392" mass="41910" checksum="A8D765CF09411B0D" modified="2008-01-15" version="1">MNPLPSHEHTCMATDPLLPLSGIRVIEFTHMVMGPTCGMILADLGAEVIKVEPPGGDKTRTLPGLGIGFFRSFNRNKKSVVLDITTEAGRATAAELAAGSDVVLENFRPGLMQSLGLDHATLSQRAPGLIYVSHKGFLPGPYEKRLALDEVVQMMGGLSYMTGPVGRPLRAGTSVNDIMGGMFGAIGVLAALRERERTGRGQEVQSALFENCVFLSSQHMQQYLMTGEAPPPMPSRVSAWSVYDVFTLAGGEQLFIGAVSDKQFATLCRVLDCADLLQRPEYADNAARVAVRPQLLAELGAILASHESARLAPQLEAAGIPYAPITRPEQLVDDPHLRQSGGLASMQTEDGGQTDVVLLPLLMNGHRPGVRMPLAGIGEHTEEILGALASRT</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="55" xmlns="http://uniprot.org/uniprot">
    <accession>A9BU85</accession>
    <name>A9BU85_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">AB hydrolase-1 domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_3162</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX35800.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_3162"/>
    <dbReference type="ESTHER" id="delas-a9bu85">
        <property type="family name" value="Bacterial_esterase"/>
    </dbReference>
    <dbReference type="PRIDE" id="A9BU85"/>
    <dbReference type="EnsemblBacteria" id="ABX35800">
        <property type="protein sequence ID" value="ABX35800"/>
        <property type="gene ID" value="Daci_3162"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_3162"/>
    <dbReference type="eggNOG" id="COG1075">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_038297_2_0_4"/>
    <dbReference type="OMA" id="LMWHGGG"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.1820">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029058">
        <property type="entry name" value="AB_hydrolase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000073">
        <property type="entry name" value="AB_hydrolase_1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00561">
        <property type="entry name" value="Abhydrolase_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53474">
        <property type="entry name" value="SSF53474"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="AB hydrolase-1" evidence="1">
        <location>
            <begin position="203"/>
            <end position="274"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF00561"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX35800.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="339" mass="37300" checksum="AAB041CBD581B6BF" modified="2008-01-15" version="1">MAACERSPVMPEVCLRKMQSHFIGGAQRTVRDLPIQHREVVRNGGERPLDMNGSYAVGQMYAMEYRLARPRSPLPVLLWHGGGMTGAQWESTPDGRQGWLWRLLEAGHDVVVCDAVERGRAGWAMFPEIYAEAPVFRSAEEAWTLFRIGHGAPSCDGVGEPFVGQRFPHENFGALVRQMVPRWLGHEAMTMAAYDALLEQFGPCVVLGHSQGGGFAAHAASRKPHLVRAVVGVEPTGMPVVQEGQQGQQGQEGADAFAPASAIPHLAVWGDHFAHSPQWQKYRAQTDVYWQLLRRLGGRAEVLDLPAAGITGNSHFCMLDTNGDEVLGRVLAWLERLGR</sequence>
</entry>
<entry dataset="Swiss-Prot" created="2008-09-02" modified="2022-08-03" version="56" xmlns="http://uniprot.org/uniprot">
    <accession>A9BUC8</accession>
    <name>URED_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Urease accessory protein UreD</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="1" type="primary">ureD</name>
        <name type="ordered locus">Daci_1186</name>
    </gene>
    <organism>
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference key="1">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain>DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="1">Required for maturation of urease via the functional incorporation of the urease nickel metallocenter.</text>
    </comment>
    <comment type="subunit">
        <text evidence="1">UreD, UreF and UreG form a complex that acts as a GTP-hydrolysis-dependent molecular chaperone, activating the urease apoprotein by helping to assemble the nickel containing metallocenter of UreC. The UreE protein probably delivers the nickel.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="1">Belongs to the UreD family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX33831.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012203117.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A9BUC8"/>
    <dbReference type="SMR" id="A9BUC8"/>
    <dbReference type="STRING" id="398578.Daci_1186"/>
    <dbReference type="PRIDE" id="A9BUC8"/>
    <dbReference type="EnsemblBacteria" id="ABX33831">
        <property type="protein sequence ID" value="ABX33831"/>
        <property type="gene ID" value="Daci_1186"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_1186"/>
    <dbReference type="eggNOG" id="COG0829">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_056339_0_0_4"/>
    <dbReference type="OMA" id="CQHIIVH"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016151">
        <property type="term" value="F:nickel cation binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006807">
        <property type="term" value="P:nitrogen compound metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01384">
        <property type="entry name" value="UreD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002669">
        <property type="entry name" value="UreD"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33643">
        <property type="entry name" value="PTHR33643"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01774">
        <property type="entry name" value="UreD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword id="KW-0143">Chaperone</keyword>
    <keyword id="KW-0963">Cytoplasm</keyword>
    <keyword id="KW-0533">Nickel</keyword>
    <keyword id="KW-1185">Reference proteome</keyword>
    <feature type="chain" id="PRO_0000346561" description="Urease accessory protein UreD">
        <location>
            <begin position="1"/>
            <end position="305"/>
        </location>
    </feature>
    <evidence type="ECO:0000255" key="1">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01384"/>
        </source>
    </evidence>
    <sequence length="305" mass="32257" checksum="4827D1A25B4FC7E7" modified="2008-01-15" version="1">MSAALPITAVPACASGWQAMLDLRFGHRAGQGSVLSHARHSGPLRVQKPLHPEGPGICHAVLLHPPGGVAGGDQLQIDVTVEPGAHALLTTPGATRWYKSQGRPAAQRVRLRVEEGAILEWLPQENMLFAGADATMALDLDLAPGARAIGWDAVVLGRYGAGEHWNHTGAAPTAAARLQLHNRLACGGRPLWLEQGELHAGHALLSSPVAWAGLPIQASLWAVAPEPLAAMEPLSEQLAASLPWSDEVRAGASLLAGQGGAPSVLLLRVLARRMEAARAVLHEGWRLLRPALLNQQARPPRLWAT</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="82" xmlns="http://uniprot.org/uniprot">
    <accession>A9BUZ2</accession>
    <name>A9BUZ2_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="6">Carboxyl-terminal protease</fullName>
            <ecNumber evidence="6">3.4.21.102</ecNumber>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ordered locus">Daci_1812</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="7" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1 3">Belongs to the peptidase S41A family.</text>
    </comment>
    <dbReference type="EC" id="3.4.21.102" evidence="6"/>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX34454.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012203739.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_1812"/>
    <dbReference type="MEROPS" id="S41.004"/>
    <dbReference type="PRIDE" id="A9BUZ2"/>
    <dbReference type="EnsemblBacteria" id="ABX34454">
        <property type="protein sequence ID" value="ABX34454"/>
        <property type="gene ID" value="Daci_1812"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_1812"/>
    <dbReference type="eggNOG" id="COG0793">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_017295_1_1_4"/>
    <dbReference type="OMA" id="TFNQVDW"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004252">
        <property type="term" value="F:serine-type endopeptidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006508">
        <property type="term" value="P:proteolysis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd07560">
        <property type="entry name" value="Peptidase_S41_CPP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.30.42.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029045">
        <property type="entry name" value="ClpP/crotonase-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001478">
        <property type="entry name" value="PDZ"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036034">
        <property type="entry name" value="PDZ_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004447">
        <property type="entry name" value="Peptidase_S41A"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005151">
        <property type="entry name" value="Tail-specific_protease"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13180">
        <property type="entry name" value="PDZ_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03572">
        <property type="entry name" value="Peptidase_S41"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00228">
        <property type="entry name" value="PDZ"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00245">
        <property type="entry name" value="TSPc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50156">
        <property type="entry name" value="SSF50156"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52096">
        <property type="entry name" value="SSF52096"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00225">
        <property type="entry name" value="prc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50106">
        <property type="entry name" value="PDZ"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3 6" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="3 6" id="KW-0645">Protease</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 3" id="KW-0720">Serine protease</keyword>
    <feature type="domain" description="PDZ" evidence="5">
        <location>
            <begin position="88"/>
            <end position="156"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="4">
        <location>
            <begin position="400"/>
            <end position="478"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="4">
        <location>
            <begin position="400"/>
            <end position="444"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00009179"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022825"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="RuleBase" id="RU004404"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="PROSITE" id="PS50106"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="ABX34454.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="478" mass="52360" checksum="DB3EB8054F919E18" modified="2008-01-15" version="1">MGQKIKIAGWVSVGVIAGALTTVSLQTVARGAMTPLPLEEIQQLSAVFGLIKTDYVEPVDDKKLITDAISGMVSSLDPHSQYFDKKSYKEFREGTSGRFVGVGIEITQEDGLIKVVSPIEGSPAFRAGLKTGDLITKIDDTAVKGLSLNDAVKRMRGEPNTKVQLTILRKDESRSFPVTITREEIKTQSVKGKVIEPGYGWIRLSQFQERTVDDFVRKVEELYKQDPNMKGLVLDLRNDPGGLLDAAVAISAAFLPPDVTVVSTNGQLAESKETYKASPSFYARRGMGDPLQRLPASLKKLPLVVLVNEGSASASEIVAGALQDHKRAIIMGSQTFGKGSVQTVRPLGPDTGLKLTTARYYTPSGKSIQAKGIVPDVMVDETPEGDLFAALRMREADLEKHLSSGQGAEVKDEVREKAREEARKRLEEEAKKPPAERRLPEFGTEKDFQLQQALNRLKGQPVMVSKTLTEREPEKKEN</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2020-10-07" version="44" xmlns="http://uniprot.org/uniprot">
    <accession>A9BV19</accession>
    <name>A9BV19_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="8">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="8" type="ordered locus">Daci_1841</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="9" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="2">Cell membrane</location>
            <topology evidence="2">Multi-pass membrane protein</topology>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX34481.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_1841"/>
    <dbReference type="EnsemblBacteria" id="ABX34481">
        <property type="protein sequence ID" value="ABX34481"/>
        <property type="gene ID" value="Daci_1841"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_1841"/>
    <dbReference type="eggNOG" id="COG1284">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_063199_3_0_4"/>
    <dbReference type="OMA" id="AEGEYTH"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003740">
        <property type="entry name" value="YitT"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02588">
        <property type="entry name" value="YitT_membrane"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="6 7" id="KW-0472">Membrane</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4 7" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="5 7" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="52"/>
            <end position="72"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="78"/>
            <end position="99"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="111"/>
            <end position="129"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="141"/>
            <end position="162"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="183"/>
            <end position="205"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="211"/>
            <end position="228"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00004651"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="ABX34481.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="237" mass="25339" checksum="A7202E63CE49157C" modified="2008-01-15" version="1">MGTVKAPNRGLCDDRSVITPTMSMPSLPAAAPAAPVPATASLRHGLFEDVQALFTGTLFVGIAMMMFAQAGLLTGSTAGLAFVLHYATGWPFGLVFFAINIPFYWFAWTRVGRTFTVKTFICVGALSLITEMGPRLIHIDYLHPAFAAIAGGLLMGSGLLFLARHRSSLGGATIASLYLQDRYGIRAGKVQMAIDCCVVLLALWVVPFERVAWSVLAAVVMGVFLAVSHRPGRYAGQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="45" xmlns="http://uniprot.org/uniprot">
    <accession>A9BV80</accession>
    <name>A9BV80_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_2104</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX34744.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="PRIDE" id="A9BV80"/>
    <dbReference type="EnsemblBacteria" id="ABX34744">
        <property type="protein sequence ID" value="ABX34744"/>
        <property type="gene ID" value="Daci_2104"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_2104"/>
    <dbReference type="eggNOG" id="ENOG5033G0Z">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_2069237_0_0_4"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="30"/>
            <end position="51"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="33"/>
            <end position="51"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX34744.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="118" mass="12879" checksum="4515BA8D4AF51D41" modified="2008-01-15" version="1">MPATQLVFPEIECSPVVSRPVLALVAQSSDEGCTGNEKRKGRAARHSDSAARKAAYRAAKARVDYTDKPEIIAKLRETAAELGCSVNELLQSMVRFAECNRNWKQVGLYGALRDGALQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="80" xmlns="http://uniprot.org/uniprot">
    <accession>A9BVB0</accession>
    <name>A9BVB0_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Transcriptional regulator, LysR family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Daci_2134</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="4" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the LysR transcriptional regulatory family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX34774.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012204057.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_2134"/>
    <dbReference type="PRIDE" id="A9BVB0"/>
    <dbReference type="EnsemblBacteria" id="ABX34774">
        <property type="protein sequence ID" value="ABX34774"/>
        <property type="gene ID" value="Daci_2134"/>
    </dbReference>
    <dbReference type="GeneID" id="60686532"/>
    <dbReference type="KEGG" id="dac:Daci_2134"/>
    <dbReference type="eggNOG" id="COG0583">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_039613_39_0_4"/>
    <dbReference type="OMA" id="MTWNESG"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003700">
        <property type="term" value="F:DNA-binding transcription factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005119">
        <property type="entry name" value="LysR_subst-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000847">
        <property type="entry name" value="Tscrpt_reg_HTH_LysR"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036390">
        <property type="entry name" value="WH_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00126">
        <property type="entry name" value="HTH_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03466">
        <property type="entry name" value="LysR_substrate"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00039">
        <property type="entry name" value="HTHLYSR"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46785">
        <property type="entry name" value="SSF46785"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50931">
        <property type="entry name" value="HTH_LYSR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HTH lysR-type" evidence="2">
        <location>
            <begin position="10"/>
            <end position="67"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00009437"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS50931"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ABX34774.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="310" mass="34518" checksum="CAE54D5ADE72A574" modified="2008-01-15" version="1">MRDQALFDKIDLHLIRVLHTVLTERSVSRAALRLGMHQPAVSAALKRLRDLAGDSLLVRSGAHMQPTEAGLRMVQPAADILRAAEGLFSDARHFDPRTSTRTFRIAASDYLDPLFLPRLVAHLKTEAPGCPVDILALNGDAHYEVQLAQGDVDVVIGNWPEPPQGLHMASLFEDEVVCLVSPQHPAVRRGWDVAQWLEAEHIAPTPTYPGARGVIDDQLSRMGLQRQVAARCAHFSLIPDIVATSLLVLTTGRLFCERFSQRLPLVILPCPVEFAPLVYYQLWHARTHMGASTRWLRDAVRHVALMSRAR</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2021-09-29" version="55" xmlns="http://uniprot.org/uniprot">
    <accession>A9BVH2</accession>
    <name>A9BVH2_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Acyltransferase 3</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Daci_2401</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="4" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX35039.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012204321.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_2401"/>
    <dbReference type="EnsemblBacteria" id="ABX35039">
        <property type="protein sequence ID" value="ABX35039"/>
        <property type="gene ID" value="Daci_2401"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_2401"/>
    <dbReference type="eggNOG" id="COG1835">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_717134_0_0_4"/>
    <dbReference type="OMA" id="HHLAFYG"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016747">
        <property type="term" value="F:acyltransferase activity, transferring groups other than amino-acyl groups"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002656">
        <property type="entry name" value="Acyl_transf_3_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01757">
        <property type="entry name" value="Acyl_transf_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-0012">Acyltransferase</keyword>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0808">Transferase</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="12"/>
            <end position="30"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="50"/>
            <end position="71"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="92"/>
            <end position="114"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="147"/>
            <end position="166"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="187"/>
            <end position="212"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="218"/>
            <end position="237"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="244"/>
            <end position="262"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="268"/>
            <end position="290"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="302"/>
            <end position="320"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="332"/>
            <end position="351"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="363"/>
            <end position="384"/>
        </location>
    </feature>
    <feature type="domain" description="Acyl_transf_3" evidence="2">
        <location>
            <begin position="10"/>
            <end position="345"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF01757"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ABX35039.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="385" mass="41831" checksum="F06DCBDADE9570CF" modified="2008-01-15" version="1">MSHASRSALIDCTKGLACAAIIWHHLAFYGPMSDIAHPAAPDLIDWLYEYARMAVQIFLVLGGYLAAASMAPQGHGQHSDPWSRIGRRFVRLVVPYAVALVVAIVVSAAVRPWFDHASVSGEPDLWQLVAHALLLQNIVGEESLSAGVWYVSIDFQLFALTALLLAGTRWGGALLRRRFGGDALSRCWPWALSVAQALVVIGVTASLLGFNLDAQWDVWAPYFFGAYGLGMLAYWAAHADKSSTAWNWSLLIVALVVAALALEWRDRIALAGATALALVVAMRSPAFAQAQGWAPLRRLGKISYSVFLVHFSVCLLVNAVESHFWPQSIPAALLGMCTAFVLSIAAGHLLYERVERHVPSWHMALRWQAGLVGTGLIAAFVAGLR</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="79" xmlns="http://uniprot.org/uniprot">
    <accession>A9BVM1</accession>
    <name>A9BVM1_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="14 15">Dihydroxy-acid dehydratase</fullName>
            <shortName evidence="15">DAD</shortName>
            <ecNumber evidence="14 15">4.2.1.9</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="15" type="primary">ilvD</name>
        <name evidence="17" type="ordered locus">Daci_2450</name>
    </gene>
    <organism evidence="17 18">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="17 18" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="18">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="18" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="18">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="15">Functions in the biosynthesis of branched-chain amino acids. Catalyzes the dehydration of (2R,3R)-2,3-dihydroxy-3-methylpentanoate (2,3-dihydroxy-3-methylvalerate) into 2-oxo-3-methylpentanoate (2-oxo-3-methylvalerate) and of (2R)-2,3-dihydroxy-3-methylbutanoate (2,3-dihydroxyisovalerate) into 2-oxo-3-methylbutanoate (2-oxoisovalerate), the penultimate precursor to L-isoleucine and L-valine, respectively.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="11">
            <text>(2R)-2,3-dihydroxy-3-methylbutanoate = 3-methyl-2-oxobutanoate + H2O</text>
            <dbReference type="Rhea" id="RHEA:24809"/>
            <dbReference type="ChEBI" id="CHEBI:11851"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:49072"/>
            <dbReference type="EC" id="4.2.1.9"/>
        </reaction>
        <physiologicalReaction direction="left-to-right" evidence="11">
            <dbReference type="Rhea" id="RHEA:24810"/>
        </physiologicalReaction>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="15">
            <text>(2R,3R)-2,3-dihydroxy-3-methylpentanoate = (S)-3-methyl-2-oxopentanoate + H2O</text>
            <dbReference type="Rhea" id="RHEA:27694"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:35146"/>
            <dbReference type="ChEBI" id="CHEBI:49258"/>
            <dbReference type="EC" id="4.2.1.9"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="15">
            <name>2Fe-2S cluster</name>
            <dbReference type="ChEBI" id="CHEBI:49601"/>
        </cofactor>
        <text evidence="15">Binds 1 [2Fe-2S] cluster per subunit. This cluster acts as a Lewis acid cofactor.</text>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="1 15">
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </cofactor>
    </comment>
    <comment type="pathway">
        <text evidence="13 15">Amino-acid biosynthesis; L-isoleucine biosynthesis; L-isoleucine from 2-oxobutanoate: step 3/4.</text>
    </comment>
    <comment type="pathway">
        <text evidence="12 15">Amino-acid biosynthesis; L-valine biosynthesis; L-valine from pyruvate: step 3/4.</text>
    </comment>
    <comment type="subunit">
        <text evidence="15">Homodimer.</text>
    </comment>
    <comment type="similarity">
        <text evidence="2 15">Belongs to the IlvD/Edd family.</text>
    </comment>
    <comment type="caution">
        <text evidence="15">Lacks conserved residue(s) required for the propagation of feature annotation.</text>
    </comment>
    <dbReference type="EC" id="4.2.1.9" evidence="14 15"/>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX35088.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_2450"/>
    <dbReference type="PRIDE" id="A9BVM1"/>
    <dbReference type="EnsemblBacteria" id="ABX35088">
        <property type="protein sequence ID" value="ABX35088"/>
        <property type="gene ID" value="Daci_2450"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_2450"/>
    <dbReference type="eggNOG" id="COG0129">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_014271_4_2_4"/>
    <dbReference type="OMA" id="DIERNAC"/>
    <dbReference type="UniPathway" id="UPA00047">
        <property type="reaction ID" value="UER00057"/>
    </dbReference>
    <dbReference type="UniPathway" id="UPA00049">
        <property type="reaction ID" value="UER00061"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051537">
        <property type="term" value="F:2 iron, 2 sulfur cluster binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004160">
        <property type="term" value="F:dihydroxy-acid dehydratase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000287">
        <property type="term" value="F:magnesium ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009097">
        <property type="term" value="P:isoleucine biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009099">
        <property type="term" value="P:valine biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.50.30.80">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00012">
        <property type="entry name" value="IlvD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR042096">
        <property type="entry name" value="Dihydro-acid_dehy_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004404">
        <property type="entry name" value="DihydroxyA_deHydtase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000581">
        <property type="entry name" value="DiOHA_6PGluconate_deHydtase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020558">
        <property type="entry name" value="DiOHA_6PGluconate_deHydtase_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037237">
        <property type="entry name" value="IlvD/EDD_N"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00920">
        <property type="entry name" value="ILVD_EDD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF143975">
        <property type="entry name" value="SSF143975"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00886">
        <property type="entry name" value="ILVD_EDD_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00887">
        <property type="entry name" value="ILVD_EDD_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4 15" id="KW-0001">2Fe-2S</keyword>
    <keyword evidence="3 15" id="KW-0028">Amino-acid biosynthesis</keyword>
    <keyword evidence="10 15" id="KW-0100">Branched-chain amino acid biosynthesis</keyword>
    <keyword evidence="7 15" id="KW-0408">Iron</keyword>
    <keyword evidence="8 15" id="KW-0411">Iron-sulfur</keyword>
    <keyword evidence="9 15 17" id="KW-0456">Lyase</keyword>
    <keyword evidence="6 15" id="KW-0460">Magnesium</keyword>
    <keyword evidence="5 15" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="18" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="16">
        <location>
            <begin position="1"/>
            <end position="88"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="16">
        <location>
            <begin position="36"/>
            <end position="71"/>
        </location>
    </feature>
    <feature type="active site" description="Proton acceptor" evidence="15">
        <location>
            <position position="559"/>
        </location>
    </feature>
    <feature type="binding site" evidence="15">
        <location>
            <position position="131"/>
        </location>
        <ligand>
            <name>[2Fe-2S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:190135"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="15">
        <location>
            <position position="163"/>
        </location>
        <ligand>
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="15">
        <location>
            <position position="205"/>
        </location>
        <ligand>
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </ligand>
    </feature>
    <feature type="binding site" description="via carbamate group" evidence="15">
        <location>
            <position position="206"/>
        </location>
        <ligand>
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="15">
        <location>
            <position position="533"/>
        </location>
        <ligand>
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </ligand>
    </feature>
    <feature type="modified residue" description="N6-carboxylysine" evidence="15">
        <location>
            <position position="206"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001946"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00006486"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022605"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022714"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022842"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023004"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00023014"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00023239"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00023304"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="ARBA" id="ARBA00029304"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="12">
        <source>
            <dbReference type="ARBA" id="ARBA00029436"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="13">
        <source>
            <dbReference type="ARBA" id="ARBA00029437"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="14">
        <source>
            <dbReference type="ARBA" id="ARBA00029490"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="15">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00012"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="16">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="17">
        <source>
            <dbReference type="EMBL" id="ABX35088.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="18">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="658" mass="68646" checksum="9E8E40AF4177336B" modified="2008-01-15" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="65" xmlns="http://uniprot.org/uniprot">
    <accession>A9BVM6</accession>
    <name>A9BVM6_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">BZIP domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Daci_2455</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="4" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX35093.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012204374.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_2455"/>
    <dbReference type="PRIDE" id="A9BVM6"/>
    <dbReference type="EnsemblBacteria" id="ABX35093">
        <property type="protein sequence ID" value="ABX35093"/>
        <property type="gene ID" value="Daci_2455"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_2455"/>
    <dbReference type="eggNOG" id="COG3416">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_064963_0_0_4"/>
    <dbReference type="OMA" id="NQVVMIE"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003700">
        <property type="term" value="F:DNA-binding transcription factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004827">
        <property type="entry name" value="bZIP"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07716">
        <property type="entry name" value="bZIP_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="BZIP" evidence="2">
        <location>
            <begin position="258"/>
            <end position="282"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="229"/>
            <end position="258"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF07716"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ABX35093.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="289" mass="31157" checksum="76FB572B1B4B9510" modified="2008-01-15" version="1">MDIVVNEELKAYIDPLTPDELDALERSIVAEGCRDALVLWNDLLIDGHNRYAICQKHGLPFNTVQATQFKNMDDVHLWMIDQHLGRRSVSDFQRGVLALRKREIIATRRSAAAAAVMAAKADAPQAEGEAPWEGETDPVVAAALASVAKVPDEALDTREALARVARLSSSQVKLIETIQQKAAPEVVAAVRSGDISLSTAAVVASLPVDEQQAVAAAGADELKQAAKRVRDAKKKPKAAKPEAEAADGEGAAVTASPEELQQRVNELEAENERLRQQIKALQELLAEQG</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="77" xmlns="http://uniprot.org/uniprot">
    <accession>A9BVR9</accession>
    <name>A9BVR9_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="8">ABC transporter related</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="8" type="ordered locus">Daci_2794</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="9" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX35432.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012204642.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_2794"/>
    <dbReference type="PRIDE" id="A9BVR9"/>
    <dbReference type="EnsemblBacteria" id="ABX35432">
        <property type="protein sequence ID" value="ABX35432"/>
        <property type="gene ID" value="Daci_2794"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_2794"/>
    <dbReference type="eggNOG" id="COG1120">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_000604_1_11_4"/>
    <dbReference type="OMA" id="VEFGRYP"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003593">
        <property type="entry name" value="AAA+_ATPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003439">
        <property type="entry name" value="ABC_transporter-like_ATP-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017871">
        <property type="entry name" value="ABC_transporter-like_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00005">
        <property type="entry name" value="ABC_tran"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00382">
        <property type="entry name" value="AAA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00211">
        <property type="entry name" value="ABC_TRANSPORTER_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50893">
        <property type="entry name" value="ABC_TRANSPORTER_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3 6" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="1" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="5" id="KW-0472">Membrane</keyword>
    <keyword evidence="2 6" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4" id="KW-1278">Translocase</keyword>
    <feature type="domain" description="ABC transporter" evidence="7">
        <location>
            <begin position="8"/>
            <end position="244"/>
        </location>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <begin position="40"/>
            <end position="47"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022967"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00434"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="PROSITE" id="PS50893"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="ABX35432.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="267" mass="28650" checksum="460B60C0136086B0" modified="2008-01-15" version="1">MTALAPALQARALKVRLGDRQVLGGLSLALPAGRWTAIVGPNGAGKSTLLRALAGMESGAGVQGEVELLGRPLRQWSARERACSLAWLGQNQPVAGDMRVHDVVMLGRLPHQGWLAAPSQADHAAVEQALRQTQGWDWRMRSVGSLSGGERQRVLLARALAVQARVLLMDEPLANLDPPHQADWLECVQALVAQGRTVVSVLHEISMALQAQDLVILDKGQVMHQGACADAATHAALEAVFEHRLRIRAIDGQWLALPRLRGQAAAP</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2020-08-12" version="32" xmlns="http://uniprot.org/uniprot">
    <accession>A9BVY2</accession>
    <name>A9BVY2_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Daci_2857</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="2" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX35495.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_2857"/>
    <dbReference type="EnsemblBacteria" id="ABX35495">
        <property type="protein sequence ID" value="ABX35495"/>
        <property type="gene ID" value="Daci_2857"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_2857"/>
    <dbReference type="eggNOG" id="COG5649">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_2989166_0_0_4"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ABX35495.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="57" mass="6351" checksum="2D802D1BE21B5493" modified="2008-01-15" version="1">MIKTVSPEAAASACVLINQRIAELGGWRGEVLAHVRRLIVQALPDVAEEWKWSVPVW</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-01-19" version="58" xmlns="http://uniprot.org/uniprot">
    <accession>A9BW05</accession>
    <name>A9BW05_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Periplasmic binding protein/LacI transcriptional regulator</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Daci_3183</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="4" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX35821.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012205021.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_3183"/>
    <dbReference type="EnsemblBacteria" id="ABX35821">
        <property type="protein sequence ID" value="ABX35821"/>
        <property type="gene ID" value="Daci_3183"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_3183"/>
    <dbReference type="eggNOG" id="COG1879">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_037628_3_7_4"/>
    <dbReference type="OMA" id="QELNNEY"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0042597">
        <property type="term" value="C:periplasmic space"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR028082">
        <property type="entry name" value="Peripla_BP_I"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025997">
        <property type="entry name" value="SBP_2_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13407">
        <property type="entry name" value="Peripla_BP_4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53822">
        <property type="entry name" value="SSF53822"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="1">
        <location>
            <begin position="1"/>
            <end position="26"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5002736106" evidence="1">
        <location>
            <begin position="27"/>
            <end position="308"/>
        </location>
    </feature>
    <feature type="domain" description="Peripla_BP_4" evidence="2">
        <location>
            <begin position="38"/>
            <end position="290"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF13407"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ABX35821.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="308" mass="31985" checksum="4C57E4477FE7DBAE" modified="2008-01-15" version="1">MDRNTFLRRMLAGAFTFGLPASPALAQPGPGPSPARTIGVSLLTQQHPFYLELAQAMQQEAARQGLKLDLSIANQDLGKQISDVEDFVSKKVDAIILSPVDSRGVKAAVLKAAAARIPVITVDIAASGVEVASHVATDNRAGGVLAGQLMGRATGGKGQIGVLHYPSIQSVVDRVEGFKAAIATFPGMKIVSVQPGITRAEALAASQNMLQAHPDLAGIFGFGDDAALAALASVKGAKKLEQVKIVGFDGMAEARAAVDREPAFVGVIRQYPDQLGLQAVAIAAQLLSGKPVEKFHPVLPGVYTAAAR</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="43" xmlns="http://uniprot.org/uniprot">
    <accession>A9BW43</accession>
    <name>A9BW43_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Daci_3221</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
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    </organism>
    <reference evidence="1 2" key="1">
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                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="2" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX35859.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012205059.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_3221"/>
    <dbReference type="PRIDE" id="A9BW43"/>
    <dbReference type="EnsemblBacteria" id="ABX35859">
        <property type="protein sequence ID" value="ABX35859"/>
        <property type="gene ID" value="Daci_3221"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_3221"/>
    <dbReference type="eggNOG" id="COG3646">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_046670_14_1_4"/>
    <dbReference type="OMA" id="VAWRECH"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ABX35859.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="237" mass="26447" checksum="D208E6C28CCF11B3" modified="2008-01-15" version="1">MNALQNIAPALTMSSREIAELTSKDLGHVNRDIRAMLDSLEDDPELEHVREDKDARGYTLAFHLGRELTYTLLAGYSTQLRRRVIARWQVLEAAHAKTPAELSRMDILRLAMESEQARIQAESERDKAIATKAEIGSRREATAMATASAKSREVARLQHELGRNQQHATVIAVEKATGMAFPKNAYVDLRRVTQKYGLQAVSVVDARYGSVKAWPAVAWRECHGIELSDLFPGQEPA</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="46" xmlns="http://uniprot.org/uniprot">
    <accession>A9BWK2</accession>
    <name>A9BWK2_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_3898</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX36529.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012205723.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_3898"/>
    <dbReference type="PRIDE" id="A9BWK2"/>
    <dbReference type="EnsemblBacteria" id="ABX36529">
        <property type="protein sequence ID" value="ABX36529"/>
        <property type="gene ID" value="Daci_3898"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_3898"/>
    <dbReference type="eggNOG" id="COG1196">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_666860_0_0_4"/>
    <dbReference type="OMA" id="NDRFDSI"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="coiled-coil region" evidence="1">
        <location>
            <begin position="221"/>
            <end position="248"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX36529.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="412" mass="45117" checksum="EEB510095A5FEFE1" modified="2008-01-15" version="1">MSDPANSTNAFTPSADIYKGISVLSSEDWIGLTTFFESAVTDNPTTTELMRAMLGMQKQDAFRPEFSEAVELFVTLKGVGQKFKADVQDKMLTLADDIVQYNDVAATTYERLIELVDRFDLEGAPTPSAEPAVEAKWKALVKVWESDTPSGRSEQIKRNFSSALEQLIEDANARSVRAFALQNSILDNGNGILMRLNACKTAFNGQKQKFTTTLGAEGAANQKLKAAVEKLENDLKALRRKEKDEVIVLSTSPAYLAIPLFGPLILAGVDIGVGADLAVTRRKIAEKVDEVRTIQATMATNERFIGYYNRSNDRFDSISKSIEDLGPKLKTLGEAWRAISADLGNIHKVLSTTGRKSLQGENWFSLTVVLGTAKKGWARVAGQADHFRRFGGTPKKAQSVDQLVELASKKAA</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2021-06-02" version="43" xmlns="http://uniprot.org/uniprot">
    <accession>A9BWM7</accession>
    <name>A9BWM7_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Daci_3923</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
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            <taxon>Comamonadaceae</taxon>
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        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
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            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="2" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX36554.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012205748.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_3923"/>
    <dbReference type="EnsemblBacteria" id="ABX36554">
        <property type="protein sequence ID" value="ABX36554"/>
        <property type="gene ID" value="Daci_3923"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_3923"/>
    <dbReference type="eggNOG" id="ENOG5032YRU">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_192336_0_0_4"/>
    <dbReference type="OMA" id="HMELVGW"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025629">
        <property type="entry name" value="DUF4287"/>
    </dbReference>
    <dbReference type="Pfam" id="PF14117">
        <property type="entry name" value="DUF4287"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ABX36554.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="69" mass="7769" checksum="3765C3E65211603C" modified="2008-01-15" version="1">MTETSKVKGPASYFPSIEKTYGKPIAHWMDLLHQQDTRKHMELVGWLKAQHQMGHGHANALVAVFLAQA</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-01-19" version="61" xmlns="http://uniprot.org/uniprot">
    <accession>A9BWP7</accession>
    <name>A9BWP7_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">NTP_transf_3 domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Daci_3943</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="4" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX36574.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012205768.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_3943"/>
    <dbReference type="EnsemblBacteria" id="ABX36574">
        <property type="protein sequence ID" value="ABX36574"/>
        <property type="gene ID" value="Daci_3943"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_3943"/>
    <dbReference type="eggNOG" id="COG2068">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_061980_4_1_4"/>
    <dbReference type="OMA" id="GLPWHLE"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016740">
        <property type="term" value="F:transferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.550.10">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025877">
        <property type="entry name" value="MobA-like_NTP_Trfase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029044">
        <property type="entry name" value="Nucleotide-diphossugar_trans"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12804">
        <property type="entry name" value="NTP_transf_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53448">
        <property type="entry name" value="SSF53448"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="NTP_transf_3" evidence="2">
        <location>
            <begin position="49"/>
            <end position="151"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF12804"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ABX36574.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="190" mass="19470" checksum="3B259331088B9DE6" modified="2008-01-15" version="1">MLTDFKGRPCVLILASGRGERFRASGGTMHKLSAPLGGSTVLDHTLAAVRASGLPWHLEDAGHPGMGDSLAAAVRATADAPGWLVLPADLPLVSPQTLLKVADALRSGAQAAQPIHAGQWGHPVGFGAACGEALMALSGEKGGAPVLKALRQAGDVVQVEVDDAGVLTDIDTLDDLARAELVLQARLKLI</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="66" xmlns="http://uniprot.org/uniprot">
    <accession>A9BWQ5</accession>
    <name>A9BWQ5_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Ferric uptake regulation protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_3951</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX36582.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_3951"/>
    <dbReference type="PRIDE" id="A9BWQ5"/>
    <dbReference type="EnsemblBacteria" id="ABX36582">
        <property type="protein sequence ID" value="ABX36582"/>
        <property type="gene ID" value="Daci_3951"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_3951"/>
    <dbReference type="eggNOG" id="COG0735">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_096072_6_0_4"/>
    <dbReference type="OMA" id="GWCADCA"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003700">
        <property type="term" value="F:DNA-binding transcription factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002481">
        <property type="entry name" value="FUR"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036390">
        <property type="entry name" value="WH_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01475">
        <property type="entry name" value="FUR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46785">
        <property type="entry name" value="SSF46785"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00020910"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX36582.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="165" mass="16942" checksum="592E3EA5A82DD4F2" modified="2008-01-15" version="1">MSLPTPTSLPIPAGMRSTRATRAVLAMWESRADALLSEADVEAALHAQGVEVNRVTVYRLLDRLAAAGVLRRSVDAARVARYGRSVPGAGRQADAAAHFECADCHSAFRLGGEGGGGGEPLQAALLQLHQALAASGLQGRAIDVAVTGLCQDCSSAGPSRNTPSA</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="63" xmlns="http://uniprot.org/uniprot">
    <accession>A9BX22</accession>
    <name>A9BX22_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">GCN5-related N-acetyltransferase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_4376</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX37007.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012206179.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_4376"/>
    <dbReference type="PRIDE" id="A9BX22"/>
    <dbReference type="EnsemblBacteria" id="ABX37007">
        <property type="protein sequence ID" value="ABX37007"/>
        <property type="gene ID" value="Daci_4376"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_4376"/>
    <dbReference type="eggNOG" id="COG0456">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_013985_21_0_4"/>
    <dbReference type="OMA" id="KIEMLFI"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008080">
        <property type="term" value="F:N-acetyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016181">
        <property type="entry name" value="Acyl_CoA_acyltransferase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000182">
        <property type="entry name" value="GNAT_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13673">
        <property type="entry name" value="Acetyltransf_10"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55729">
        <property type="entry name" value="SSF55729"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51186">
        <property type="entry name" value="GNAT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="N-acetyltransferase" evidence="1">
        <location>
            <begin position="2"/>
            <end position="143"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS51186"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX37007.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="145" mass="16229" checksum="47E6B3A4F7BB4A83" modified="2008-01-15" version="1">MYTLRASRPEDGAALVDLWRRSVDATHHFLSPDDRKAIDAEVVEFLPHAPVTVAVDEHDQPHGFMLIDGTHMEALFIDPDVRGTGIGRRLLQHGLALHGQLSTDVNMQNSQAVGFYQRMGFVETGRSEVDSQGRPYPLVHLRYQG</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="61" xmlns="http://uniprot.org/uniprot">
    <accession>A9BXR5</accession>
    <name>A9BXR5_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="8">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="8" type="ordered locus">Daci_5713</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="9" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the UPF0324 family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX38341.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012207510.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_5713"/>
    <dbReference type="PRIDE" id="A9BXR5"/>
    <dbReference type="EnsemblBacteria" id="ABX38341">
        <property type="protein sequence ID" value="ABX38341"/>
        <property type="gene ID" value="Daci_5713"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_5713"/>
    <dbReference type="eggNOG" id="COG2855">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_033541_0_0_4"/>
    <dbReference type="OMA" id="ARPPWFI"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004630">
        <property type="entry name" value="UPF0324_bac"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018383">
        <property type="entry name" value="UPF0324_pro"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30106">
        <property type="entry name" value="PTHR30106"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03601">
        <property type="entry name" value="Cons_hypoth698"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00698">
        <property type="entry name" value="TIGR00698"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="6 7" id="KW-0472">Membrane</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4 7" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="5 7" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="21"/>
            <end position="38"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="44"/>
            <end position="64"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="106"/>
            <end position="128"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="140"/>
            <end position="157"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="169"/>
            <end position="190"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="241"/>
            <end position="259"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="279"/>
            <end position="304"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="310"/>
            <end position="328"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="335"/>
            <end position="353"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00007977"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="ABX38341.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="361" mass="37348" checksum="10ACB42E2CB9E480" modified="2008-01-15" version="1">MNTTSLPRPSHPSGWLRQLTELAPGLLLAGAIAAAATWGARQPLLAGSGLSALTLAICIGLVIGNTVYPRLAPSCHAGVGLAKQRLLRAGIVLYGLRLTFQDIGHVGMAGVVVDALVLGSTFLLAQWLGRRVFGLDARTTVLIGAGSSICGAAAVLATEPVIKGRAEDVAVAVATVVVFGTVGTFLYPALFHWNASHGWLDMSPAQYGLYVGSTVHEVAQVVAAGEAIAPEAADVAVISKMVRVMMLAPFLLLLSMAVARGNRSSQVSDGQPRRITIPWFALGFVAMAGVNSLGVLPAAVVQVGVQLDNALLAVAMAALGLTTHVRAVRAAGTKPLLLAALLFAWLLVAGLLFNRWVPGLL</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="72" xmlns="http://uniprot.org/uniprot">
    <accession>A9BXV0</accession>
    <name>A9BXV0_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Luciferase family protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_5748</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX38376.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012207545.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_5748"/>
    <dbReference type="EnsemblBacteria" id="ABX38376">
        <property type="protein sequence ID" value="ABX38376"/>
        <property type="gene ID" value="Daci_5748"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_5748"/>
    <dbReference type="eggNOG" id="COG2141">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_027853_3_0_4"/>
    <dbReference type="OMA" id="MTAGTFR"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016705">
        <property type="term" value="F:oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.20.20.30">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011251">
        <property type="entry name" value="Luciferase-like_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036661">
        <property type="entry name" value="Luciferase-like_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00296">
        <property type="entry name" value="Bac_luciferase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51679">
        <property type="entry name" value="SSF51679"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Bac_luciferase" evidence="1">
        <location>
            <begin position="15"/>
            <end position="297"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF00296"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX38376.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="340" mass="37287" checksum="A8EED771F1A7DD6E" modified="2008-01-15" version="1">MRIDLAGWTRDATRGGHREFLALFERAERLGFEGVWFNEFRVPDTAWPYPSPLLLAAAVLARTERLRVGTSVLVLPLHHPLMLAEEIAQLDLQSAGRIDVGVGRGTEPAALRALQIDADSTRERFAQSCRILVEALSGRPIVAGQGPWSFEDRPALPSTVQRPHPPLYVAGSTAETLGFAVDQNLPLLLSLEPPEGMQLERLEAAARERGRDAAALRARSSLARYVCIGADEAAVQARLATLWPQLYQRRVYFAGKRGVPADQVLPIDVPRVLAEQFIHGTPEQCHAQITALRERTGIGQLRCVFNANGLWSDAQALAGMELFAQEVLPSLRSAVPFATV</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2021-06-02" version="58" xmlns="http://uniprot.org/uniprot">
    <accession>A9BY89</accession>
    <name>A9BY89_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">GCN5-related N-acetyltransferase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_1584</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX34228.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012203513.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_1584"/>
    <dbReference type="EnsemblBacteria" id="ABX34228">
        <property type="protein sequence ID" value="ABX34228"/>
        <property type="gene ID" value="Daci_1584"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_1584"/>
    <dbReference type="eggNOG" id="COG0456">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_013985_18_7_4"/>
    <dbReference type="OMA" id="AMVDWEN"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008080">
        <property type="term" value="F:N-acetyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016181">
        <property type="entry name" value="Acyl_CoA_acyltransferase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000182">
        <property type="entry name" value="GNAT_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00583">
        <property type="entry name" value="Acetyltransf_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55729">
        <property type="entry name" value="SSF55729"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51186">
        <property type="entry name" value="GNAT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="N-acetyltransferase" evidence="1">
        <location>
            <begin position="5"/>
            <end position="158"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS51186"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX34228.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="158" mass="17360" checksum="763A497728E798A4" modified="2008-01-15" version="1">MTDTLTLRPSRPDDLPALNAVLWATYDSTWKPQLTADKHAQFCASGKTAQYVQSRGHLFWVAECDGVVAGFVDWVDDFIGALHVLPAWQGRGVGRALLAHAEQALRADGRAQVRLETDSFNTQALGFYTAQGYATLDTYPDEEWDCGLTTVLMGKPLA</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="51" xmlns="http://uniprot.org/uniprot">
    <accession>A9BZ12</accession>
    <name>A9BZ12_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">PepSY-associated TM helix domain protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_2267</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX34907.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012204190.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_2267"/>
    <dbReference type="PRIDE" id="A9BZ12"/>
    <dbReference type="EnsemblBacteria" id="ABX34907">
        <property type="protein sequence ID" value="ABX34907"/>
        <property type="gene ID" value="Daci_2267"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_2267"/>
    <dbReference type="eggNOG" id="COG3182">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_031962_4_0_4"/>
    <dbReference type="OMA" id="FDLHRSG"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005625">
        <property type="entry name" value="PepSY-ass_TM"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR34219">
        <property type="entry name" value="PTHR34219"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03929">
        <property type="entry name" value="PepSY_TM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="12"/>
            <end position="32"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="155"/>
            <end position="179"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="226"/>
            <end position="245"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="378"/>
            <end position="399"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX34907.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="409" mass="45465" checksum="D4B3AEDFC31A34C3" modified="2008-01-15" version="1">MRALWTVVHRWIGLVLAGFLTMAGLTGAVLSWDHEIDEWLNADMLETPARGPLKTPLELAAVVEASEPRAEISYMTLGLVEGEAAMFMVRPRPDPATGQAPALGYDTVFVDPVSGHITGQRNGRSFALSQRNLMPWLRHLHESLLAPRFWGTDRWGYWFMGSLALLWVADSFVALLLTFPVKLRKSAPRLTAAVGSWWRRWLPSWRVRWGGGAYKLNFDLHRAGGLWVWAVIVIVAFTSFSLNLYREVFYPVMSTVSTTTPGPYETLKPAPQGTLLVPKVSFAQAIAIAQSEAKRLGFAQPAGGIWWGGDFPFYNISFFDPHDETGAMGMGLSNIYVSSDNGEVLGTYRPWHGTAADVFVQLQLPLHSGRILGTPGRVLMSFVGVLVAVLSITGVIIWWRKRRARKMTP</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="90" xmlns="http://uniprot.org/uniprot">
    <accession>A9BZ36</accession>
    <name>A9BZ36_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="5 10">Pyruvate dehydrogenase E1 component</fullName>
            <ecNumber evidence="4 10">1.2.4.1</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="15" type="ordered locus">Daci_2498</name>
    </gene>
    <organism evidence="15 16">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="15 16" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="16">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="16" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="16">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="2 10">Component of the pyruvate dehydrogenase (PDH) complex, that catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2).</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="9 10">
            <text>(R)-N(6)-lipoyl-L-lysyl-[dihydrolipoyllysine-residue acetyltransferase] + H(+) + pyruvate = (R)-N(6)-(S(8)-acetyldihydrolipoyl)-L-lysyl-[dihydrolipoyllysine-residue acetyltransferase] + CO2</text>
            <dbReference type="Rhea" id="RHEA:19189"/>
            <dbReference type="Rhea" id="RHEA-COMP:10480"/>
            <dbReference type="Rhea" id="RHEA-COMP:10481"/>
            <dbReference type="ChEBI" id="CHEBI:15361"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:16526"/>
            <dbReference type="ChEBI" id="CHEBI:83099"/>
            <dbReference type="ChEBI" id="CHEBI:83111"/>
            <dbReference type="EC" id="1.2.4.1"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="11">
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </cofactor>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="1 10">
            <name>thiamine diphosphate</name>
            <dbReference type="ChEBI" id="CHEBI:58937"/>
        </cofactor>
    </comment>
    <comment type="subunit">
        <text evidence="3">Homodimer. Part of the PDH complex, consisting of multiple copies of pyruvate dehydrogenase (E1), dihydrolipoamide acetyltransferase (E2) and lipoamide dehydrogenase (E3).</text>
    </comment>
    <dbReference type="EC" id="1.2.4.1" evidence="4 10"/>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX35136.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_2498"/>
    <dbReference type="PRIDE" id="A9BZ36"/>
    <dbReference type="EnsemblBacteria" id="ABX35136">
        <property type="protein sequence ID" value="ABX35136"/>
        <property type="gene ID" value="Daci_2498"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_2498"/>
    <dbReference type="eggNOG" id="COG2609">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_009154_2_0_4"/>
    <dbReference type="OMA" id="LVFFQPH"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004739">
        <property type="term" value="F:pyruvate dehydrogenase (acetyl-transferring) activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016744">
        <property type="term" value="F:transketolase or transaldolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006096">
        <property type="term" value="P:glycolytic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd02017">
        <property type="entry name" value="TPP_E1_EcPDC_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.920">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017600">
        <property type="entry name" value="Alpha-ketoglut_DH"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035807">
        <property type="entry name" value="PDC_E1_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004660">
        <property type="entry name" value="PDH_E1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041621">
        <property type="entry name" value="PDH_E1_M"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029061">
        <property type="entry name" value="THDP-binding"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009014">
        <property type="entry name" value="Transketo_C/PFOR_II"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR033248">
        <property type="entry name" value="Transketolase_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005474">
        <property type="entry name" value="Transketolase_N"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43825:SF3">
        <property type="entry name" value="PTHR43825:SF3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF17831">
        <property type="entry name" value="PDH_E1_M"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02780">
        <property type="entry name" value="Transketolase_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00456">
        <property type="entry name" value="Transketolase_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF000156">
        <property type="entry name" value="Pyruvate_dh_E1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52518">
        <property type="entry name" value="SSF52518"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52922">
        <property type="entry name" value="SSF52922"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00759">
        <property type="entry name" value="aceE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR03186">
        <property type="entry name" value="AKGDH_not_PDH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="8" id="KW-0324">Glycolysis</keyword>
    <keyword evidence="11" id="KW-0460">Magnesium</keyword>
    <keyword evidence="11" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="6 10" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="10" id="KW-0670">Pyruvate</keyword>
    <keyword evidence="16" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="7 10" id="KW-0786">Thiamine pyrophosphate</keyword>
    <feature type="domain" description="TRANSKETOLASE_1" evidence="12">
        <location>
            <begin position="136"/>
            <end position="337"/>
        </location>
    </feature>
    <feature type="domain" description="PDH_E1_M" evidence="14">
        <location>
            <begin position="527"/>
            <end position="739"/>
        </location>
    </feature>
    <feature type="domain" description="Transketolase_C" evidence="13">
        <location>
            <begin position="766"/>
            <end position="811"/>
        </location>
    </feature>
    <feature type="binding site" evidence="11">
        <location>
            <position position="271"/>
        </location>
        <ligand>
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="11">
        <location>
            <position position="301"/>
        </location>
        <ligand>
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="11">
        <location>
            <position position="303"/>
        </location>
        <ligand>
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001964"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00003157"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00011739"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00012281"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00017172"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023002"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023052"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00023152"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00033635"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="PIRNR" id="PIRNR000156"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="PIRSR" id="PIRSR000156-1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="12">
        <source>
            <dbReference type="Pfam" id="PF00456"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="13">
        <source>
            <dbReference type="Pfam" id="PF02780"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="14">
        <source>
            <dbReference type="Pfam" id="PF17831"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="15">
        <source>
            <dbReference type="EMBL" id="ABX35136.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="16">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="902" mass="98079" checksum="337C187B8B271E75" modified="2008-01-15" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="95" xmlns="http://uniprot.org/uniprot">
    <accession>A9BZ41</accession>
    <name>A9BZ41_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="10">UDP-2,3-diacylglucosamine hydrolase</fullName>
            <ecNumber evidence="10">3.6.1.54</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="10">UDP-2,3-diacylglucosamine diphosphatase</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="10" type="primary">lpxH</name>
        <name evidence="13" type="ordered locus">Daci_2503</name>
    </gene>
    <organism evidence="13 14">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="13 14" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="14">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="14" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="14">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="10">Hydrolyzes the pyrophosphate bond of UDP-2,3-diacylglucosamine to yield 2,3-diacylglucosamine 1-phosphate (lipid X) and UMP by catalyzing the attack of water at the alpha-P atom. Involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="10">
            <text>H2O + UDP-2-N,3-O-bis[(3R)-3-hydroxytetradecanoyl]-alpha-D-glucosamine = 2-N,3-O-bis[(3R)-3-hydroxytetradecanoyl]-alpha-D-glucosaminyl 1-phosphate + 2 H(+) + UMP</text>
            <dbReference type="Rhea" id="RHEA:25213"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:57865"/>
            <dbReference type="ChEBI" id="CHEBI:57957"/>
            <dbReference type="ChEBI" id="CHEBI:78847"/>
            <dbReference type="EC" id="3.6.1.54"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="10">
            <name>Mn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29035"/>
        </cofactor>
        <text evidence="10">Binds 2 Mn(2+) ions per subunit in a binuclear metal center.</text>
    </comment>
    <comment type="pathway">
        <text evidence="10">Glycolipid biosynthesis; lipid IV(A) biosynthesis; lipid IV(A) from (3R)-3-hydroxytetradecanoyl-[acyl-carrier-protein] and UDP-N-acetyl-alpha-D-glucosamine: step 4/6.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="10">Cell inner membrane</location>
            <topology evidence="10">Peripheral membrane protein</topology>
            <orientation evidence="10">Cytoplasmic side</orientation>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="10">Belongs to the LpxH family.</text>
    </comment>
    <comment type="similarity">
        <text evidence="1">Belongs to the metallophosphoesterase superfamily. YfcE family.</text>
    </comment>
    <comment type="caution">
        <text evidence="10">Lacks conserved residue(s) required for the propagation of feature annotation.</text>
    </comment>
    <dbReference type="EC" id="3.6.1.54" evidence="10"/>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX35141.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012204422.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_2503"/>
    <dbReference type="PRIDE" id="A9BZ41"/>
    <dbReference type="EnsemblBacteria" id="ABX35141">
        <property type="protein sequence ID" value="ABX35141"/>
        <property type="gene ID" value="Daci_2503"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_2503"/>
    <dbReference type="eggNOG" id="COG2908">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_074586_0_0_4"/>
    <dbReference type="OMA" id="FDFWFEY"/>
    <dbReference type="UniPathway" id="UPA00359">
        <property type="reaction ID" value="UER00480"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0019897">
        <property type="term" value="C:extrinsic component of plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030145">
        <property type="term" value="F:manganese ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008758">
        <property type="term" value="F:UDP-2,3-diacylglucosamine hydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009245">
        <property type="term" value="P:lipid A biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.60.21.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00575">
        <property type="entry name" value="LpxH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR024654">
        <property type="entry name" value="Calcineurin-like_PHP_lpxH"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043461">
        <property type="entry name" value="LpxH-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029052">
        <property type="entry name" value="Metallo-depent_PP-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010138">
        <property type="entry name" value="UDP-diacylglucosamine_Hdrlase"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR34990">
        <property type="entry name" value="PTHR34990"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR34990:SF1">
        <property type="entry name" value="PTHR34990:SF1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12850">
        <property type="entry name" value="Metallophos_2"/>
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    </dbReference>
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    </dbReference>
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        <property type="entry name" value="lipid_A_lpxH"/>
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    </dbReference>
    <proteinExistence type="inferred from homology"/>
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    <keyword evidence="2 10" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="10 13" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="5 10" id="KW-0441">Lipid A biosynthesis</keyword>
    <keyword evidence="3 10" id="KW-0444">Lipid biosynthesis</keyword>
    <keyword evidence="7 10" id="KW-0443">Lipid metabolism</keyword>
    <keyword evidence="9 10" id="KW-0464">Manganese</keyword>
    <keyword evidence="8 10" id="KW-0472">Membrane</keyword>
    <keyword evidence="6 10" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="14" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Metallophos_2" evidence="12">
        <location>
            <begin position="30"/>
            <end position="232"/>
        </location>
    </feature>
    <feature type="region of interest" description="Substrate binding" evidence="10">
        <location>
            <begin position="104"/>
            <end position="105"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="11">
        <location>
            <begin position="177"/>
            <end position="199"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="11">
        <location>
            <begin position="177"/>
            <end position="195"/>
        </location>
    </feature>
    <feature type="binding site" evidence="10">
        <location>
            <position position="33"/>
        </location>
        <ligand>
            <name>Mn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29035"/>
            <label>1</label>
        </ligand>
    </feature>
    <feature type="binding site" evidence="10">
        <location>
            <position position="35"/>
        </location>
        <ligand>
            <name>Mn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29035"/>
            <label>1</label>
        </ligand>
    </feature>
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        <location>
            <position position="64"/>
        </location>
    </feature>
    <feature type="binding site" evidence="10">
        <location>
            <position position="104"/>
        </location>
        <ligand>
            <name>Mn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29035"/>
            <label>2</label>
        </ligand>
    </feature>
    <feature type="binding site" evidence="10">
        <location>
            <position position="139"/>
        </location>
        <ligand>
            <name>Mn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29035"/>
            <label>2</label>
        </ligand>
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    <feature type="binding site" evidence="10">
        <location>
            <position position="147"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="10">
        <location>
            <position position="185"/>
        </location>
        <ligand>
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        </ligand>
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        <location>
            <position position="189"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
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        <location>
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        </location>
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    <feature type="binding site" evidence="10">
        <location>
            <position position="228"/>
        </location>
        <ligand>
            <name>Mn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29035"/>
            <label>1</label>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
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        </source>
    </evidence>
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        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
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        <source>
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        </source>
    </evidence>
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        <source>
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        </source>
    </evidence>
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        </source>
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        </source>
    </evidence>
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            <dbReference type="ARBA" id="ARBA00023211"/>
        </source>
    </evidence>
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        <source>
            <dbReference type="HAMAP-Rule" id="MF_00575"/>
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    </evidence>
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        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="12">
        <source>
            <dbReference type="Pfam" id="PF12850"/>
        </source>
    </evidence>
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        <source>
            <dbReference type="EMBL" id="ABX35141.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="14">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="282" mass="30877" checksum="BCC18F9FB905E343" modified="2008-01-15" version="1">MAQTAAPRPLPVPPIAAEWTLPAGWRTLEFISDLHLQASEPATVQAFRQYLAATRADAVFLLGDLFEVWVGDDALLEPGSFEAECATAMRAAATRTPLFFMQGNRDFLTGAQFDALCGTTTLTDPTVLDCGDQRILLSHGDALCLDDVDYQRFRAMARSAAWQAGFLAQPLQVRRDQARGIRQESESRKRESDGHGAAMPTYADLDAQATRSWLHAAGAATLIHGHTHRPADHDLGDGLRRIVLSDWDLAAPAPRAEVLRWERGMGLQRLPLSDVLEQASPP</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="63" xmlns="http://uniprot.org/uniprot">
    <accession>A9BZC3</accession>
    <name>A9BZC3_DELAS</name>
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        <submittedName>
            <fullName evidence="7">Fimbrial assembly protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ordered locus">Daci_2885</name>
    </gene>
    <organism evidence="7 8">
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        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
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    <reference evidence="7 8" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
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                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
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            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="8" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the PilY1 family.</text>
    </comment>
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        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
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    </dbReference>
    <dbReference type="STRING" id="398578.Daci_2885"/>
    <dbReference type="PRIDE" id="A9BZC3"/>
    <dbReference type="EnsemblBacteria" id="ABX35523">
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        <property type="gene ID" value="Daci_2885"/>
    </dbReference>
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    <dbReference type="eggNOG" id="COG3419">
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    </dbReference>
    <dbReference type="HOGENOM" id="CLU_001890_0_1_4"/>
    <dbReference type="OMA" id="ISEMMFE"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009289">
        <property type="term" value="C:pilus"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
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        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008707">
        <property type="entry name" value="PilC_beta_prop_dom"/>
    </dbReference>
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    </dbReference>
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        <property type="entry name" value="WD40/YVTN_repeat-like_dom_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF05567">
        <property type="entry name" value="Neisseria_PilC"/>
        <property type="match status" value="1"/>
    </dbReference>
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        <property type="entry name" value="SSF50998"/>
        <property type="match status" value="1"/>
    </dbReference>
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    <keyword evidence="3" id="KW-0281">Fimbrium</keyword>
    <keyword evidence="2" id="KW-1029">Fimbrium biogenesis</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
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        <location>
            <begin position="1"/>
            <end position="34"/>
        </location>
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        <location>
            <begin position="35"/>
            <end position="1493"/>
        </location>
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        <location>
            <begin position="967"/>
            <end position="1321"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="4">
        <location>
            <begin position="1451"/>
            <end position="1493"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00008387"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022558"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023263"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="Pfam" id="PF05567"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="ABX35523.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="1493" mass="159731" checksum="1F9B36EDD4E53B6B" modified="2008-01-15" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="59" xmlns="http://uniprot.org/uniprot">
    <accession>A9BZM2</accession>
    <name>A9BZM2_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Thiamine biosynthesis protein ThiS</fullName>
        </submittedName>
    </protein>
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        <name evidence="1" type="ordered locus">Daci_3292</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
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            <taxon>Betaproteobacteria</taxon>
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        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
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            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="2" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX35930.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
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        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_3292"/>
    <dbReference type="PRIDE" id="A9BZM2"/>
    <dbReference type="EnsemblBacteria" id="ABX35930">
        <property type="protein sequence ID" value="ABX35930"/>
        <property type="gene ID" value="Daci_3292"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_3292"/>
    <dbReference type="eggNOG" id="COG2104">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
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    <dbReference type="OMA" id="MDIHINQ"/>
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        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.10.20.30">
        <property type="match status" value="1"/>
    </dbReference>
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        <property type="entry name" value="Beta-grasp_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016155">
        <property type="entry name" value="Mopterin_synth/thiamin_S_b"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010035">
        <property type="entry name" value="Thi_S"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003749">
        <property type="entry name" value="ThiS/MoaD-like"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR34472">
        <property type="entry name" value="PTHR34472"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02597">
        <property type="entry name" value="ThiS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54285">
        <property type="entry name" value="SSF54285"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01683">
        <property type="entry name" value="thiS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ABX35930.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="65" mass="6809" checksum="63E1C93E97F4E7A7" modified="2008-01-15" version="1">MNITINQQATELSDGATVADALAQLAPRPPFAVAINTVFVPKARYAEQALNDGDRLEVISPVTGG</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="43" xmlns="http://uniprot.org/uniprot">
    <accession>A9BZQ1</accession>
    <name>A9BZQ1_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Daci_3321</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
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            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="2" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX35959.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012205159.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_3321"/>
    <dbReference type="PRIDE" id="A9BZQ1"/>
    <dbReference type="EnsemblBacteria" id="ABX35959">
        <property type="protein sequence ID" value="ABX35959"/>
        <property type="gene ID" value="Daci_3321"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_3321"/>
    <dbReference type="eggNOG" id="COG3265">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_808269_0_0_4"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ABX35959.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="347" mass="38800" checksum="8919FC87A4BFFB79" modified="2008-01-15" version="1">MQLTMDTTKHINPDHYLETEQGRLFTPERSAAAWELAYRDLDKALSVSSPATKLYVVVGVQAAGKSSWIQQNALALGGDAVFFDAALPKAVHRERSIQIARSHGVPVVCIWLKADLQTALRRNTQRRADHQVPEQAIRSVFAMFEPPSEQEGFAVIHIDDTEPAPGSSIQPMGPRQFPSLQDLDQQVIVGWRACEMALAEGGRWDMDESGRQHWVPGEAVWSHPQVPYLQFIEIWIQLVDGRVWSMLSRIDDGSGFHGLYLVTPEASESDPGVPASIGYRDRLLAELPLGLVRIKDMRRDADGFVVEMCMLIGQKVVRFLSGEVYERGQGLFEVIELDESILVQIES</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="101" xmlns="http://uniprot.org/uniprot">
    <accession>A9BZQ2</accession>
    <name>A9BZQ2_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="7">Oxidoreductase FAD/NAD(P)-binding domain protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ordered locus">Daci_3322</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="8" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX35960.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012205160.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_3322"/>
    <dbReference type="PRIDE" id="A9BZQ2"/>
    <dbReference type="EnsemblBacteria" id="ABX35960">
        <property type="protein sequence ID" value="ABX35960"/>
        <property type="gene ID" value="Daci_3322"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_3322"/>
    <dbReference type="eggNOG" id="COG1018">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="eggNOG" id="COG3576">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_025773_0_0_4"/>
    <dbReference type="OMA" id="LICCAVP"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051537">
        <property type="term" value="F:2 iron, 2 sulfur cluster binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016491">
        <property type="term" value="F:oxidoreductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd00207">
        <property type="entry name" value="fer2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.30.110.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.10.20.30">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.80">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036010">
        <property type="entry name" value="2Fe-2S_ferredoxin-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001041">
        <property type="entry name" value="2Fe-2S_ferredoxin-type"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012675">
        <property type="entry name" value="Beta-grasp_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008333">
        <property type="entry name" value="Cbr1-like_FAD-bd_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017927">
        <property type="entry name" value="FAD-bd_FR_type"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR039261">
        <property type="entry name" value="FNR_nucleotide-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001433">
        <property type="entry name" value="OxRdtase_FAD/NAD-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011576">
        <property type="entry name" value="Pyridox_Oxase_put"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017938">
        <property type="entry name" value="Riboflavin_synthase-like_b-brl"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012349">
        <property type="entry name" value="Split_barrel_FMN-bd"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00970">
        <property type="entry name" value="FAD_binding_6"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00111">
        <property type="entry name" value="Fer2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00175">
        <property type="entry name" value="NAD_binding_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01243">
        <property type="entry name" value="Putative_PNPOx"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52343">
        <property type="entry name" value="SSF52343"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54292">
        <property type="entry name" value="SSF54292"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF63380">
        <property type="entry name" value="SSF63380"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51085">
        <property type="entry name" value="2FE2S_FER_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51384">
        <property type="entry name" value="FAD_FR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0001">2Fe-2S</keyword>
    <keyword evidence="3" id="KW-0408">Iron</keyword>
    <keyword evidence="4" id="KW-0411">Iron-sulfur</keyword>
    <keyword evidence="2" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="FAD-binding FR-type" evidence="6">
        <location>
            <begin position="339"/>
            <end position="440"/>
        </location>
    </feature>
    <feature type="domain" description="2Fe-2S ferredoxin-type" evidence="5">
        <location>
            <begin position="603"/>
            <end position="691"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022714"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023004"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023014"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="PROSITE" id="PS51085"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="PROSITE" id="PS51384"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="ABX35960.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="691" mass="74706" checksum="7C5A0A60394B7F0C" modified="2008-01-15" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="65" xmlns="http://uniprot.org/uniprot">
    <accession>A9BZT7</accession>
    <name>A9BZT7_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="4">Methyltrans_SAM domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="5" type="ordered locus">Daci_3357</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="6" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX35995.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012205195.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_3357"/>
    <dbReference type="PRIDE" id="A9BZT7"/>
    <dbReference type="EnsemblBacteria" id="ABX35995">
        <property type="protein sequence ID" value="ABX35995"/>
        <property type="gene ID" value="Daci_3357"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_3357"/>
    <dbReference type="eggNOG" id="COG1092">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_014042_1_0_4"/>
    <dbReference type="OMA" id="FLDMRYG"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008168">
        <property type="term" value="F:methyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0032259">
        <property type="term" value="P:methylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.150">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019614">
        <property type="entry name" value="SAM-dep_methyl-trfase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029063">
        <property type="entry name" value="SAM-dependent_MTases_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF10672">
        <property type="entry name" value="Methyltrans_SAM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53335">
        <property type="entry name" value="SSF53335"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0489">Methyltransferase</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0949">S-adenosyl-L-methionine</keyword>
    <keyword evidence="2" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Methyltrans_SAM" evidence="4">
        <location>
            <begin position="19"/>
            <end position="307"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022603"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022691"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="Pfam" id="PF10672"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="ABX35995.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="319" mass="35044" checksum="0577669A75D54B54" modified="2008-01-15" version="1">MQALLDAIARMALPSDAQRIFHGRGGLYPGCEHLVLDAFPPVLVLTSFQPLDDDALAAIGTALSLRWRELAPDQPLNWVYQLRQPAAPAETRLMAGEVPDPHIVTEAGTRYRVQVLRGQNHGLFLDMAEGRRWVHAHVANHPEHRHGIKVLNLFAYTCAFSVVALQAGARHVMNMDMAQGALATGQQNHRLNDLSGASFLAHDIFSSWGKITRGGPYHLIVVDPPSYQKGSFVATKDYARLMRRLPDLLRPGGHVLLCLNAPEMGTQFLTSQMQEVAPELEFVERLANPATFADIDAERSLKVLVYRAPATPAAADTAS</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="70" xmlns="http://uniprot.org/uniprot">
    <accession>A9BZY2</accession>
    <name>A9BZY2_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="8">Acyl-CoA dehydrogenase domain protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="8" type="ordered locus">Daci_3610</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="9" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>FAD</name>
            <dbReference type="ChEBI" id="CHEBI:57692"/>
        </cofactor>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the acyl-CoA dehydrogenase family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX36244.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012205444.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_3610"/>
    <dbReference type="PRIDE" id="A9BZY2"/>
    <dbReference type="EnsemblBacteria" id="ABX36244">
        <property type="protein sequence ID" value="ABX36244"/>
        <property type="gene ID" value="Daci_3610"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_3610"/>
    <dbReference type="eggNOG" id="COG1960">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_018204_3_5_4"/>
    <dbReference type="OMA" id="WACESMI"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003995">
        <property type="term" value="F:acyl-CoA dehydrogenase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0050660">
        <property type="term" value="F:flavin adenine dinucleotide binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.540.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.110.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006089">
        <property type="entry name" value="Acyl-CoA_DH_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006091">
        <property type="entry name" value="Acyl-CoA_Oxase/DH_mid-dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR046373">
        <property type="entry name" value="Acyl-CoA_Oxase/DH_mid-dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036250">
        <property type="entry name" value="AcylCo_DH-like_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009075">
        <property type="entry name" value="AcylCo_DH/oxidase_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013786">
        <property type="entry name" value="AcylCoA_DH/ox_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037069">
        <property type="entry name" value="AcylCoA_DH/ox_N_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009100">
        <property type="entry name" value="AcylCoA_DH/oxidase_NM_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00441">
        <property type="entry name" value="Acyl-CoA_dh_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02770">
        <property type="entry name" value="Acyl-CoA_dh_M"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02771">
        <property type="entry name" value="Acyl-CoA_dh_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47203">
        <property type="entry name" value="SSF47203"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56645">
        <property type="entry name" value="SSF56645"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00072">
        <property type="entry name" value="ACYL_COA_DH_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-0274">FAD</keyword>
    <keyword evidence="3" id="KW-0285">Flavoprotein</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Acyl-CoA_dh_N" evidence="7">
        <location>
            <begin position="28"/>
            <end position="142"/>
        </location>
    </feature>
    <feature type="domain" description="Acyl-CoA_dh_M" evidence="6">
        <location>
            <begin position="146"/>
            <end position="241"/>
        </location>
    </feature>
    <feature type="domain" description="Acyl-CoA_dh_1" evidence="5">
        <location>
            <begin position="253"/>
            <end position="401"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001974"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00009347"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022630"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022827"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="Pfam" id="PF00441"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="Pfam" id="PF02770"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="Pfam" id="PF02771"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="ABX36244.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="407" mass="43558" checksum="EE8A7341A76421D5" modified="2008-01-15" version="1">MNAKDTLPAANAALLEMPFEGSERAAGLIDALNAFIHGELADLARAHGVDHENSASTELLRQVWKLSHARGFYGMTLPEAMGGAGLSVLDQVLVKEAIYATGSPFAPHVLGELSGPPRIGALIRKATPLQMEQFILPVARAEKSICFALTEAAAGSDAGALETRAVLEGDHYVLHGRKRFISGSPFADFAVLMASTAPEGSPQREISAFFVDLHAPGVQVVSGYKTMAGQSSTGDIVLDGCRVPAAQLIGEPGRGLALALGRITVNRLLHCPAMLGLAQVALRDARDYALGRQQFGRSIAQFQSIQHMLADMATEWMAARALMVQTARAIDAGIDARAQASMSKLFCSETAFRIADRAVQIHGGEGIVQGRRVEFLFRMLRMYRVLTGTSEIQRNTIAKELLERAGA</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2021-06-02" version="37" xmlns="http://uniprot.org/uniprot">
    <accession>A9C072</accession>
    <name>A9C072_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Daci_4007</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="2" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX36638.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012205832.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_4007"/>
    <dbReference type="EnsemblBacteria" id="ABX36638">
        <property type="protein sequence ID" value="ABX36638"/>
        <property type="gene ID" value="Daci_4007"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_4007"/>
    <dbReference type="eggNOG" id="ENOG5033BEP">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_196615_0_0_4"/>
    <dbReference type="OMA" id="QQDLQPR"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ABX36638.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="79" mass="8306" checksum="CA65C9408D4FD1C0" modified="2008-01-15" version="1">MSQAHTSPDALESPGTLDIAGLEAVYDQLATAIDAAGPQQSELFLVKLALLAAERLGSAQQFSELVQAAQQDLQPRVNS</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="77" xmlns="http://uniprot.org/uniprot">
    <accession>A9C0C2</accession>
    <name>A9C0C2_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="11">Ubiquinol oxidase subunit 2</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="15" type="ordered locus">Daci_4057</name>
    </gene>
    <organism evidence="15 16">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="15 16" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="16">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="16" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="16">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="11">Cell membrane</location>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="2">Periplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="3 11">Belongs to the cytochrome c oxidase subunit 2 family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX36688.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012205882.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_4057"/>
    <dbReference type="PRIDE" id="A9C0C2"/>
    <dbReference type="EnsemblBacteria" id="ABX36688">
        <property type="protein sequence ID" value="ABX36688"/>
        <property type="gene ID" value="Daci_4057"/>
    </dbReference>
    <dbReference type="GeneID" id="60688384"/>
    <dbReference type="KEGG" id="dac:Daci_4057"/>
    <dbReference type="eggNOG" id="COG1622">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_036876_0_0_4"/>
    <dbReference type="OMA" id="TAMNSFF"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0042597">
        <property type="term" value="C:periplasmic space"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0070469">
        <property type="term" value="C:respirasome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005507">
        <property type="term" value="F:copper ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009486">
        <property type="term" value="F:cytochrome bo3 ubiquinol oxidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004129">
        <property type="term" value="F:cytochrome-c oxidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016682">
        <property type="term" value="F:oxidoreductase activity, acting on diphenols and related substances as donors, oxygen as acceptor"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd04212">
        <property type="entry name" value="CuRO_UO_II"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.287.90">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.40.420">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045187">
        <property type="entry name" value="CcO_II"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002429">
        <property type="entry name" value="CcO_II-like_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010514">
        <property type="entry name" value="COX_ARM"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008972">
        <property type="entry name" value="Cupredoxin"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR034227">
        <property type="entry name" value="CuRO_UO_II"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011759">
        <property type="entry name" value="Cyt_c_oxidase_su2_TM_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036257">
        <property type="entry name" value="Cyt_c_oxidase_su2_TM_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006333">
        <property type="entry name" value="Cyt_o_ubiquinol_oxidase_su2"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR22888">
        <property type="entry name" value="PTHR22888"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00116">
        <property type="entry name" value="COX2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF06481">
        <property type="entry name" value="COX_ARM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF000292">
        <property type="entry name" value="Ubi_od_II"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF49503">
        <property type="entry name" value="SSF49503"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF81464">
        <property type="entry name" value="SSF81464"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01433">
        <property type="entry name" value="CyoA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50857">
        <property type="entry name" value="COX2_CUA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50999">
        <property type="entry name" value="COX2_TM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5 11" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="8 11" id="KW-0249">Electron transport</keyword>
    <keyword evidence="10 11 12" id="KW-0472">Membrane</keyword>
    <keyword evidence="11" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="16" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="6 11" id="KW-0679">Respiratory chain</keyword>
    <keyword evidence="7 12" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="9 12" id="KW-1133">Transmembrane helix</keyword>
    <keyword evidence="4 11" id="KW-0813">Transport</keyword>
    <feature type="transmembrane region" description="Helical" evidence="12">
        <location>
            <begin position="44"/>
            <end position="68"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="12">
        <location>
            <begin position="89"/>
            <end position="110"/>
        </location>
    </feature>
    <feature type="domain" description="COX2_TM" evidence="14">
        <location>
            <begin position="22"/>
            <end position="119"/>
        </location>
    </feature>
    <feature type="domain" description="COX2_CUA" evidence="13">
        <location>
            <begin position="134"/>
            <end position="246"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00004418"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00007866"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022448"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022660"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00022982"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="PIRNR" id="PIRNR000292"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="12">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="13">
        <source>
            <dbReference type="PROSITE" id="PS50857"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="14">
        <source>
            <dbReference type="PROSITE" id="PS50999"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="15">
        <source>
            <dbReference type="EMBL" id="ABX36688.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="16">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="348" mass="38268" checksum="5B30B4527A0CD35B" modified="2008-01-15" version="1">MLKIKELRGPAWLTAAALTASLTGCSKAVVLNPAGDIAAQQGNLVVTATLLMLIIIIPVIILTLLFAWKYRQSNTEAHYDPEWHHSTTLELVIWSVPLMIIIALGAITWISTHKLDPYRPLDRVSATKPLSTDVKPLEVQVVAMDWKWLFFIPEKGIATVNELAAPVDRPIHFKLTATSTMNSFYVPDLAGMIYAMPGMQTELNAVINKPGVFHGLASHYSGAGFSGMTFKFHGLSNEEFDQWVAKAKSEGKALTRDTYLNLVKPSERNPVERFATVDEGLYDKVLNRCVEEGKMCMHHMMAIDAAGGEAYLKAVGMNLPQDVCTVQNADRVVAFLDQRDGSAAAAQQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="44" xmlns="http://uniprot.org/uniprot">
    <accession>A9C0F0</accession>
    <name>A9C0F0_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Daci_4085</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="2" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX36716.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012205908.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_4085"/>
    <dbReference type="PRIDE" id="A9C0F0"/>
    <dbReference type="EnsemblBacteria" id="ABX36716">
        <property type="protein sequence ID" value="ABX36716"/>
        <property type="gene ID" value="Daci_4085"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_4085"/>
    <dbReference type="eggNOG" id="ENOG5031VBS">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_164689_2_0_4"/>
    <dbReference type="OMA" id="PAVEVWA"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014915">
        <property type="entry name" value="Phage_TLS_TfmB"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08809">
        <property type="entry name" value="DUF1799"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ABX36716.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="104" mass="11538" checksum="F1123546777D8732" modified="2008-01-15" version="1">MAVARAIYKRAPSAQELAAIGLRPEDYADDEAAVEVWPENLAAYDLWVEVGDQWRMGPGGPVAIDLIPVFHELDRMGLDKEAYDDMVLAIKTMARVALEEIHGE</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="50" xmlns="http://uniprot.org/uniprot">
    <accession>A9C0G0</accession>
    <name>A9C0G0_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Daci_4095</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="2" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX36726.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012205918.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_4095"/>
    <dbReference type="PRIDE" id="A9C0G0"/>
    <dbReference type="EnsemblBacteria" id="ABX36726">
        <property type="protein sequence ID" value="ABX36726"/>
        <property type="gene ID" value="Daci_4095"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_4095"/>
    <dbReference type="eggNOG" id="COG4834">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_065140_1_0_4"/>
    <dbReference type="OMA" id="MQIGWTI"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020049">
        <property type="entry name" value="DUF2184"/>
    </dbReference>
    <dbReference type="Pfam" id="PF09950">
        <property type="entry name" value="DUF2184"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF029202">
        <property type="entry name" value="UCP029202"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ABX36726.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="326" mass="35785" checksum="BB1C3A3FFE123FD3" modified="2008-01-15" version="1">MHQFTDQQALAFVTGQAYQVNQRVYEARHPDWDFGRLIFVDSSAPEWSPGILTYTSDSTGRANWQSGYAKDIPLADVNQDMQTKTFQLAAIGYQWNLEEVNTTMAFPGASLSDRRARAARLAYMKFMFDLTLKGSPEKGMGGLINYNGVVVANAPADGTGGSTLWVNAAGVGQKTPAQIVRDINIALQGISLATFETELADTILLPVEAFNYIAATPYSATTMETILSFVMRTNLYTMQTGRPLTIRTVRELGTGAANGTTGRMVAYKNDGEYVKLHLPMPHRFLPVYQDGPLNYAVPGIFRTGGVELLTTVAMRYIDQISEPPTP</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="50" xmlns="http://uniprot.org/uniprot">
    <accession>A9C0Q1</accession>
    <name>A9C0Q1_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Daci_4495</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="2" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX37124.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012206294.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_4495"/>
    <dbReference type="PRIDE" id="A9C0Q1"/>
    <dbReference type="EnsemblBacteria" id="ABX37124">
        <property type="protein sequence ID" value="ABX37124"/>
        <property type="gene ID" value="Daci_4495"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_4495"/>
    <dbReference type="eggNOG" id="COG4102">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_032896_1_0_4"/>
    <dbReference type="OMA" id="GWGSHHF"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010869">
        <property type="entry name" value="DUF1501"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006311">
        <property type="entry name" value="TAT_signal"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07394">
        <property type="entry name" value="DUF1501"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51318">
        <property type="entry name" value="TAT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ABX37124.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="482" mass="49958" checksum="DB6F3984D4D859F0" modified="2008-01-15" version="1">MNFIDPARHTRRAFLRRSTQLAAAGTALPFALNLAALGEAAAFEANDYKALVCVFLYGGCDYANTVVPYDSTRYGQYSAIRGGNSDGTAGGIALARAALGNTLLQPRTALAGGMQYALHPSMTGLAGLFNAGRAAVQLNVGPLLVPLTRAQYATGDRRSYPLPPKLFSHNDQQSVWQSQGAEGSTVGWGGNLGDLALSSNATSLFTCISATGNAVFLSGDQALQYQISPGGAVPINAVKGANVYGLTAVRGLLSELVQTAGSHAMEAEYARVTQRSISAEGQISSALSSGSLSTAFPASNPLADQLKVVARLIAGRSALGTRRQVFFVSLGGFDLHDNLIANQPQLLDKVSSAMTAFYNATAELGVADKVTAFTASDFGRTLTSNGDGSDHGWGSHHFVVGGAVRGASFYGAPPPISVGNGSGSEDQWHVGQGRLLPSTAVDQYAATLARWFGVSNTELAGVLPHIGNFGGSAYPIDLGFMG</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-01-19" version="50" xmlns="http://uniprot.org/uniprot">
    <accession>A9C0V0</accession>
    <name>A9C0V0_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Daci_5785</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="2" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX38413.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012207582.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_5785"/>
    <dbReference type="EnsemblBacteria" id="ABX38413">
        <property type="protein sequence ID" value="ABX38413"/>
        <property type="gene ID" value="Daci_5785"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_5785"/>
    <dbReference type="eggNOG" id="COG1633">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_056689_1_0_4"/>
    <dbReference type="OMA" id="MDKEWAR"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009078">
        <property type="entry name" value="Ferritin-like_SF"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47240">
        <property type="entry name" value="SSF47240"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ABX38413.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="323" mass="32883" checksum="BC84B6F1A450FD3D" modified="2008-01-15" version="1">MSDESVLIGVLQKRAKKLEDRRQFFRKTSGVAVGMAGGVILSACGGGGGDANAQANGPTDAEILNFALNLEYLESQFYHYAVFGTGLPANLQSGVGTQGAITGGRAVAFKDPVVAQYAKEIAQDEIAHVAFLRAALGSAAVAQPQIDIGGTDPNGAFSVAARAAGLVGAGTAFDPYASDENFLLGAFIFEDVGVTAYKGASPLITNKTYLEAAAGILAAEAYHAGLVRTVLYAKGLATPALRTAAGAISDARDSLDGSTDVDQGITGDATTSNIVPLDSNGIAFSRSPGDVLNIVYLTKDTATKGGFFPAGVNGSLVMSSAYA</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="51" xmlns="http://uniprot.org/uniprot">
    <accession>A9C0Z8</accession>
    <name>A9C0Z8_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Plasmid stabilization system</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Daci_5833</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="4" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX38461.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012207630.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_5833"/>
    <dbReference type="PRIDE" id="A9C0Z8"/>
    <dbReference type="EnsemblBacteria" id="ABX38461">
        <property type="protein sequence ID" value="ABX38461"/>
        <property type="gene ID" value="Daci_5833"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_5833"/>
    <dbReference type="eggNOG" id="COG3668">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_147162_10_0_4"/>
    <dbReference type="OMA" id="TNYRKRA"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.2310.20">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007712">
        <property type="entry name" value="RelE/ParE_toxin"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035093">
        <property type="entry name" value="RelE/ParE_toxin_dom_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF05016">
        <property type="entry name" value="ParE_toxin"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-1277">Toxin-antitoxin system</keyword>
    <keyword evidence="2" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="2" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="72"/>
            <end position="91"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022649"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ABX38461.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="105" mass="11774" checksum="4E9B549A7EF9D587" modified="2008-01-15" version="1">MNYRVVFSSQAQEQLVELYRYIAEAASHDVAAQYTDAIVSYCESLRTFPLRGTPRDDVRPGLRITNYRKRTVIAFAVDADMVSIIGIFYGGRDHEALLREGGGIA</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="59" xmlns="http://uniprot.org/uniprot">
    <accession>A9C1C6</accession>
    <name>A9C1C6_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">2-hydroxychromene-2-carboxylate isomerase</fullName>
            <ecNumber evidence="1">5.99.1.4</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="4" type="ordered locus">Daci_5961</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="5" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>2-hydroxychromene-2-carboxylate = (3E)-4-(2-hydroxyphenyl)-2-oxobut-3-enoate</text>
            <dbReference type="Rhea" id="RHEA:27401"/>
            <dbReference type="ChEBI" id="CHEBI:59350"/>
            <dbReference type="ChEBI" id="CHEBI:59353"/>
            <dbReference type="EC" id="5.99.1.4"/>
        </reaction>
    </comment>
    <comment type="similarity">
        <text evidence="1">Belongs to the GST superfamily. NadH family.</text>
    </comment>
    <dbReference type="EC" id="5.99.1.4" evidence="1"/>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX38589.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012207758.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_5961"/>
    <dbReference type="PRIDE" id="A9C1C6"/>
    <dbReference type="EnsemblBacteria" id="ABX38589">
        <property type="protein sequence ID" value="ABX38589"/>
        <property type="gene ID" value="Daci_5961"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_5961"/>
    <dbReference type="eggNOG" id="COG3917">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_069253_1_2_4"/>
    <dbReference type="OMA" id="NDLYRHW"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0018845">
        <property type="term" value="F:2-hydroxychromene-2-carboxylate isomerase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016491">
        <property type="term" value="F:oxidoreductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001853">
        <property type="entry name" value="DSBA-like_thioredoxin_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014440">
        <property type="entry name" value="HCCAis_GSTk"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036249">
        <property type="entry name" value="Thioredoxin-like_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01323">
        <property type="entry name" value="DSBA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF006386">
        <property type="entry name" value="HCCAis_GSTk"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52833">
        <property type="entry name" value="SSF52833"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="1" id="KW-0413">Isomerase</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="DSBA" evidence="3">
        <location>
            <begin position="3"/>
            <end position="189"/>
        </location>
    </feature>
    <feature type="active site" description="Nucleophile" evidence="2">
        <location>
            <position position="12"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="PIRNR" id="PIRNR006386"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="PIRSR" id="PIRSR006386-1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF01323"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="ABX38589.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="211" mass="23233" checksum="D27FCD54FA91CA9A" modified="2008-01-15" version="1">MKQITFHLDFISPYAWLAFAQLPQALQGISHHMQYRPVLLGALLQRHANPGPAGIAGKREWTYRHVSWLGHATGVGLDMPARHPFNPLPLLRLALECSDDGTINRFVADAVLRHVWLGGADALDPARLDALRATLAPQLRTDAADNAKRLLRENTEAAAARGLFGVPAWEVDGRLFWGLDSLPMLRAYLEGDGWFDSGWDAAASVEQGLKV</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="75" xmlns="http://uniprot.org/uniprot">
    <accession>A9C1J5</accession>
    <name>A9C1J5_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="11">Malate dehydrogenase (Oxaloacetate-decarboxylating) (NADP(+)), Phosphate acetyltransferase</fullName>
            <ecNumber evidence="11">1.1.1.40</ecNumber>
            <ecNumber evidence="11">2.3.1.8</ecNumber>
        </submittedName>
    </protein>
    <gene>
        <name evidence="11" type="ordered locus">Daci_6030</name>
    </gene>
    <organism evidence="11 12">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="11 12" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="12">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="12" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="12">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </cofactor>
    </comment>
    <comment type="similarity">
        <text evidence="3">In the C-terminal section; belongs to the phosphate acetyltransferase and butyryltransferase family.</text>
    </comment>
    <comment type="similarity">
        <text evidence="2">In the N-terminal section; belongs to the malic enzymes family.</text>
    </comment>
    <dbReference type="EC" id="1.1.1.40" evidence="11"/>
    <dbReference type="EC" id="2.3.1.8" evidence="11"/>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX38658.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012207827.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_6030"/>
    <dbReference type="PRIDE" id="A9C1J5"/>
    <dbReference type="EnsemblBacteria" id="ABX38658">
        <property type="protein sequence ID" value="ABX38658"/>
        <property type="gene ID" value="Daci_6030"/>
    </dbReference>
    <dbReference type="GeneID" id="60690391"/>
    <dbReference type="KEGG" id="dac:Daci_6030"/>
    <dbReference type="eggNOG" id="COG0280">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="eggNOG" id="COG0281">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_012366_0_0_4"/>
    <dbReference type="OMA" id="NIWVTDL"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004471">
        <property type="term" value="F:malate dehydrogenase (decarboxylating) (NAD+) activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004473">
        <property type="term" value="F:malate dehydrogenase (decarboxylating) (NADP+) activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051287">
        <property type="term" value="F:NAD binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008948">
        <property type="term" value="F:oxaloacetate decarboxylase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008959">
        <property type="term" value="F:phosphate acetyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006108">
        <property type="term" value="P:malate metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd05311">
        <property type="entry name" value="NAD_bind_2_malic_enz"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.10380">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.10750">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.10950">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR046346">
        <property type="entry name" value="Aminiacid_DH-like_N_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR032683">
        <property type="entry name" value="Malate_DH"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012301">
        <property type="entry name" value="Malic_N_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037062">
        <property type="entry name" value="Malic_N_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012302">
        <property type="entry name" value="Malic_NAD-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045213">
        <property type="entry name" value="Malic_NAD-bd_bact_type"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012188">
        <property type="entry name" value="ME_PTA"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036291">
        <property type="entry name" value="NAD(P)-bd_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR042113">
        <property type="entry name" value="P_AcTrfase_dom1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR042112">
        <property type="entry name" value="P_AcTrfase_dom2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002505">
        <property type="entry name" value="PTA_PTB"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12434">
        <property type="entry name" value="Malate_DH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00390">
        <property type="entry name" value="malic"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03949">
        <property type="entry name" value="Malic_M"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01515">
        <property type="entry name" value="PTA_PTB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF036684">
        <property type="entry name" value="ME_PTA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM01274">
        <property type="entry name" value="malic"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00919">
        <property type="entry name" value="Malic_M"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51735">
        <property type="entry name" value="SSF51735"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53223">
        <property type="entry name" value="SSF53223"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="11" id="KW-0012">Acyltransferase</keyword>
    <keyword evidence="7" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="5" id="KW-0511">Multifunctional enzyme</keyword>
    <keyword evidence="8" id="KW-0521">NADP</keyword>
    <keyword evidence="4 11" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="12" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="11" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="malic" evidence="10">
        <location>
            <begin position="29"/>
            <end position="162"/>
        </location>
    </feature>
    <feature type="domain" description="Malic_M" evidence="9">
        <location>
            <begin position="174"/>
            <end position="411"/>
        </location>
    </feature>
    <feature type="active site" description="Proton acceptor" evidence="6">
        <location>
            <position position="105"/>
        </location>
    </feature>
    <feature type="binding site" evidence="8">
        <location>
            <begin position="87"/>
            <end position="94"/>
        </location>
        <ligand>
            <name>NADP(+)</name>
            <dbReference type="ChEBI" id="CHEBI:58349"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <position position="147"/>
        </location>
        <ligand>
            <name>a divalent metal cation</name>
            <dbReference type="ChEBI" id="CHEBI:60240"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <position position="148"/>
        </location>
        <ligand>
            <name>a divalent metal cation</name>
            <dbReference type="ChEBI" id="CHEBI:60240"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="8">
        <location>
            <position position="173"/>
        </location>
        <ligand>
            <name>NADP(+)</name>
            <dbReference type="ChEBI" id="CHEBI:58349"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="8">
        <location>
            <position position="298"/>
        </location>
        <ligand>
            <name>NADP(+)</name>
            <dbReference type="ChEBI" id="CHEBI:58349"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001946"/>
        </source>
    </evidence>
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        <source>
            <dbReference type="ARBA" id="ARBA00007686"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00008756"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023002"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023268"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="PIRSR" id="PIRSR036684-1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="PIRSR" id="PIRSR036684-2"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="PIRSR" id="PIRSR036684-3"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="9">
        <source>
            <dbReference type="SMART" id="SM00919"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="10">
        <source>
            <dbReference type="SMART" id="SM01274"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="EMBL" id="ABX38658.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="769" mass="83708" checksum="3302638F4D2C0D70" modified="2008-01-15" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="51" xmlns="http://uniprot.org/uniprot">
    <accession>A9C1W2</accession>
    <name>A9C1W2_DELAS</name>
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        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
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        <name evidence="3" type="ordered locus">Daci_2659</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
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    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="4" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX35297.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012204543.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_2659"/>
    <dbReference type="PRIDE" id="A9C1W2"/>
    <dbReference type="EnsemblBacteria" id="ABX35297">
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        <property type="gene ID" value="Daci_2659"/>
    </dbReference>
    <dbReference type="GeneID" id="60687006"/>
    <dbReference type="KEGG" id="dac:Daci_2659"/>
    <dbReference type="eggNOG" id="COG1776">
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    </dbReference>
    <dbReference type="HOGENOM" id="CLU_102954_0_0_4"/>
    <dbReference type="OMA" id="QTHITQN"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006935">
        <property type="term" value="P:chemotaxis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.1550.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR028976">
        <property type="entry name" value="CheC-like_sf"/>
    </dbReference>
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        <property type="entry name" value="DUF3334"/>
    </dbReference>
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        <property type="match status" value="1"/>
    </dbReference>
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        <property type="entry name" value="SSF103039"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0145">Chemotaxis</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="201"/>
            <end position="228"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022500"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ABX35297.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="228" mass="24974" checksum="7B7200E28E9E3494" modified="2008-01-15" version="1">MNQPQHPIVHGTEDVLISLCNSVSRVLQVATQCQIQYSGMVQRITKTSLKPDIGCFVLVDGGFSGLVIINFSAAAAMELYRSYMLSMGMGEDDLATSYTSDDVSNVMGELMNQVVGDFTSKVQRELQTYITQSQPKMIRLNKQVNLSVDANLDSPEARRVTFYTGNNNIFYLELAMDRTEFIKVVDFEPQERPDPDALMAQTAASAPAAAPAPAASTDTDELLKSLGM</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2021-06-02" version="51" xmlns="http://uniprot.org/uniprot">
    <accession>A9C252</accession>
    <name>A9C252_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Small permease component of tripartite tricarboxylate transporter</fullName>
        </submittedName>
    </protein>
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        <name evidence="3" type="ordered locus">Daci_3050</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
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        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
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            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="4" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX35688.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
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    <dbReference type="EnsemblBacteria" id="ABX35688">
        <property type="protein sequence ID" value="ABX35688"/>
        <property type="gene ID" value="Daci_3050"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_3050"/>
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    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
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        <property type="entry name" value="DUF1468"/>
    </dbReference>
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        <property type="entry name" value="TctB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="2" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="47"/>
            <end position="64"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="84"/>
            <end position="103"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="124"/>
            <end position="153"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="159"/>
            <end position="177"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="31"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ABX35688.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="196" mass="20870" checksum="5587FE2116F48342" modified="2008-01-15" version="1">MDTAIHLAPPSSNAAAAAAAPAQPSSAATESIPATEAQAPGLSRRHVEYGVAAVLLALAVLVVWDNQRIGAGWSDTGPQAGYFPLRVGAVLGICAIAVFVQALRSRSQEQFASWLQLRRVAQVLLPLTAYIAVIAPLGIYAASVLFITGFMVFAGRYPWWKAVALSGFTSVLLFYVFEIQFKVPLPKGPLEAWLGY</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="53" xmlns="http://uniprot.org/uniprot">
    <accession>A9C261</accession>
    <name>A9C261_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Cupin 4 family protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Daci_3059</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
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                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="4" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>Fe(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29033"/>
        </cofactor>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX35697.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_3059"/>
    <dbReference type="PRIDE" id="A9C261"/>
    <dbReference type="EnsemblBacteria" id="ABX35697">
        <property type="protein sequence ID" value="ABX35697"/>
        <property type="gene ID" value="Daci_3059"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_3059"/>
    <dbReference type="eggNOG" id="COG2850">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_060700_1_0_4"/>
    <dbReference type="OMA" id="WDTRDVF"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003347">
        <property type="entry name" value="JmjC_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR039994">
        <property type="entry name" value="JmjC_protein"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR13096">
        <property type="entry name" value="PTHR13096"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08007">
        <property type="entry name" value="Cupin_4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00558">
        <property type="entry name" value="JmjC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51184">
        <property type="entry name" value="JMJC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="JmjC" evidence="2">
        <location>
            <begin position="87"/>
            <end position="236"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001954"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS51184"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ABX35697.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="298" mass="33734" checksum="C99440B41CA96B8B" modified="2008-01-15" version="1">MKNLINFDLTKEAFNEGIADRNIHLVRGAVEPMLFSWSDMDSALYYSDITPPFMHLHKNGIIPSEMYIEEFKAGSRTMQRLDTHAVQSLLKTGATAILNRIDNRQELVRRLCEEVASFTNAETTANAYLAFSGEGSFGSHWDTHDVMAIQLIGKKHWRVYAPTYKSPLPGQTSKSFDSTCPTDPIFDGVLEAGDLLYVPRGWWHEVLPIGETLHVAIGIYPPHVLNYVAWFLEKNIKHHEELRKTLRSCTTTKEVVSNACHVLTEGLNDPEVLKAFMDDVNKEMVKPRVPFSLKSLSI</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-01-19" version="38" xmlns="http://uniprot.org/uniprot">
    <accession>A9C2A4</accession>
    <name>A9C2A4_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Daci_3410</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="2" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX36048.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_3410"/>
    <dbReference type="EnsemblBacteria" id="ABX36048">
        <property type="protein sequence ID" value="ABX36048"/>
        <property type="gene ID" value="Daci_3410"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_3410"/>
    <dbReference type="eggNOG" id="COG1315">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="eggNOG" id="COG5164">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_796673_0_0_4"/>
    <dbReference type="OMA" id="TGYKGHA"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ABX36048.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="316" mass="32093" checksum="182FE9830F3F799B" modified="2008-01-15" version="1">MPVTTPITANNLEITKERVKEWSACTGGYRWFLEQFPQGGQFVPVYRALRAAGRADDANWLVGKISPELDPVLRVAQIAQVVGADREWVAEQVQEVIKAADKDVATGYKGHAAATGDEGHAAATGYKGHAAATGNYGHAAATGYKGHAAATGDEGHAAATGNYGHAAATGYKGHAAATGDEGHAAATGNYGHAAATGYKGHAAATGDEGHAAATGDEGHAAATGYRGHAAATGYRGHAAATGNYGHAAATGEHAIAAALGMASKAMAGEKGAIVLVHFNDDGELIHIRASKVGENGVAAGKWYLLDADGQFVECEE</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2021-06-02" version="41" xmlns="http://uniprot.org/uniprot">
    <accession>A9C2E2</accession>
    <name>A9C2E2_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Daci_3450</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="2" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX36086.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012205286.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_3450"/>
    <dbReference type="EnsemblBacteria" id="ABX36086">
        <property type="protein sequence ID" value="ABX36086"/>
        <property type="gene ID" value="Daci_3450"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_3450"/>
    <dbReference type="eggNOG" id="ENOG503434I">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_151100_0_0_4"/>
    <dbReference type="OMA" id="PCASIVD"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ABX36086.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="143" mass="14620" checksum="91D07F3FE95A1F65" modified="2008-01-15" version="1">MTAGVWEIAPATALAQLQATAARSDVGTGNARVRIYLDMPADFLGSRGVQQAEVVLARPSATVVNGTLVLHVRDAAGAMVMATGIPRWADWHAADGALLAGGEVSDADHAGPWRIAGGETPEGETSPMLYAGGLVLLGETSLS</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="68" xmlns="http://uniprot.org/uniprot">
    <accession>A9C2P4</accession>
    <name>A9C2P4_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="4 9">Gluconokinase</fullName>
            <ecNumber evidence="4 9">2.7.1.12</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="10" type="ordered locus">Daci_3761</name>
    </gene>
    <organism evidence="10 11">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="10 11" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="11">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="11" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="11">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="1 9">
            <text>ATP + D-gluconate = 6-phospho-D-gluconate + ADP + H(+)</text>
            <dbReference type="Rhea" id="RHEA:19433"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:18391"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:58759"/>
            <dbReference type="ChEBI" id="CHEBI:456216"/>
            <dbReference type="EC" id="2.7.1.12"/>
        </reaction>
    </comment>
    <comment type="pathway">
        <text evidence="2">Carbohydrate acid metabolism.</text>
    </comment>
    <comment type="similarity">
        <text evidence="3 9">Belongs to the gluconokinase GntK/GntV family.</text>
    </comment>
    <dbReference type="EC" id="2.7.1.12" evidence="4 9"/>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX36393.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_3761"/>
    <dbReference type="PRIDE" id="A9C2P4"/>
    <dbReference type="EnsemblBacteria" id="ABX36393">
        <property type="protein sequence ID" value="ABX36393"/>
        <property type="gene ID" value="Daci_3761"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_3761"/>
    <dbReference type="eggNOG" id="COG3265">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_077168_4_0_4"/>
    <dbReference type="OMA" id="MLESQFA"/>
    <dbReference type="UniPathway" id="UPA00705"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046316">
        <property type="term" value="F:gluconokinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005975">
        <property type="term" value="P:carbohydrate metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016310">
        <property type="term" value="P:phosphorylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd02021">
        <property type="entry name" value="GntK"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR031322">
        <property type="entry name" value="Shikimate/glucono_kinase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006001">
        <property type="entry name" value="Therm_gnt_kin"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43442">
        <property type="entry name" value="PTHR43442"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01202">
        <property type="entry name" value="SKI"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01313">
        <property type="entry name" value="therm_gnt_kin"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="8 9" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="7 9 10" id="KW-0418">Kinase</keyword>
    <keyword evidence="6 9" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="11" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="5 9" id="KW-0808">Transferase</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001329"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00004761"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00008420"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00012054"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022777"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="RuleBase" id="RU363066"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="EMBL" id="ABX36393.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="195" mass="20862" checksum="37D5B67347D2046E" modified="2008-01-15" version="1">MDSAIPTTTEAAPADTRPRALVVMGVSGCGKSSVGQALADALGWTLHEGDAHHAEESIRKMQAGIPLTDDDRSGWLDRLAQLLAQAMPGQGVVLTCSALKRKYRDRLRAAGPAGAVGFVFLDLNYDTALQRVQERAGHFFSPELVANQFATLERPDGECAVLSVDATLPLTDIVHRAQSWQVLPAAQADTFSQNP</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="46" xmlns="http://uniprot.org/uniprot">
    <accession>A9C2X3</accession>
    <name>A9C2X3_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_4146</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX36777.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012205956.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_4146"/>
    <dbReference type="PRIDE" id="A9C2X3"/>
    <dbReference type="EnsemblBacteria" id="ABX36777">
        <property type="protein sequence ID" value="ABX36777"/>
        <property type="gene ID" value="Daci_4146"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_4146"/>
    <dbReference type="eggNOG" id="ENOG502Z7Q1">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_039028_2_1_4"/>
    <dbReference type="OMA" id="PRAKFAW"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="32"/>
            <end position="57"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="224"/>
            <end position="279"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="366"/>
            <end position="401"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Pro residues" evidence="1">
        <location>
            <begin position="371"/>
            <end position="393"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX36777.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="414" mass="45581" checksum="B074EDF737B868DA" modified="2008-01-15" version="1">MAVDDTAPRALRQGPIALAELFDAALKDLVPKPAPSAPASTPAQSPTPTSGDAFLFSGNRHETVPRKLFLDRRLTPLERNAWQVFRLMLNDDGVTAFPTYEQLRPWLASMPCAGQASHETVARALTLMRLSRWLSLVRRRRDPKTGRILGNLYVLHDEPLTPFEAMQLDPDYLQLVSQALGHSAKAVQIVGLHTLKEIGEDPLLAGRTLPSRLQVMAERLAKQDLTASDSYPQEDAIHDSEEGAPSLLRNGERPSTDSEAGSKPAPDVSLRNPKQARTVRSSCINEIRTTAQARALGDLQWPKRFAQLKAEQQAGAKVALQQVDASLRQDVLDEWAARCSNHGIRNPAGYLFGIIQRAIHGEFNAWAKKDPPPAPTQPNERPPPAPPAQTQGKPVPPEVARQHIERLRDLLASK</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="45" xmlns="http://uniprot.org/uniprot">
    <accession>A9C2Y0</accession>
    <name>A9C2Y0_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Daci_4153</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="2" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX36784.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012205962.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_4153"/>
    <dbReference type="PRIDE" id="A9C2Y0"/>
    <dbReference type="EnsemblBacteria" id="ABX36784">
        <property type="protein sequence ID" value="ABX36784"/>
        <property type="gene ID" value="Daci_4153"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_4153"/>
    <dbReference type="eggNOG" id="ENOG502ZC5F">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_138530_0_0_4"/>
    <dbReference type="OMA" id="GGQRMFL"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ABX36784.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="130" mass="14774" checksum="FC9884F6F4121629" modified="2008-01-15" version="1">MNQLLPQEVVDQIMREEQHFAAAPQAFFEAWKRGAEIAGPEWFGDGTRDGLNQAKSKWDLRPNMLRLNDALGVLSSGQRMFLSAMVSFYNAHEGGAMLKRCHFHGLSDFDGLDLERRKVIADLMLNYSGW</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-01-19" version="50" xmlns="http://uniprot.org/uniprot">
    <accession>A9C2Z1</accession>
    <name>A9C2Z1_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Putative secreted protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_4164</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX36795.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012205973.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_4164"/>
    <dbReference type="EnsemblBacteria" id="ABX36795">
        <property type="protein sequence ID" value="ABX36795"/>
        <property type="gene ID" value="Daci_4164"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_4164"/>
    <dbReference type="eggNOG" id="COG3266">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_068440_3_0_4"/>
    <dbReference type="OMA" id="AGPAWDM"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR022260">
        <property type="entry name" value="Integr_conj_element_PilL"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR03748">
        <property type="entry name" value="conj_PilL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="1">
        <location>
            <begin position="1"/>
            <end position="27"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5002732788" evidence="1">
        <location>
            <begin position="28"/>
            <end position="192"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX36795.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="192" mass="20180" checksum="CC750EB81D7C1131" modified="2008-01-15" version="1">MPAIPVSRRLVGAGLLAAALASGCATTTAPLVPDAIEGVSSAPEPEAPEFIPVVRYGRYTLVELAPTAAQRDLLLQTIDVSMPEDARATVGDGLRHVLKRSGYQLCETPSAVTELYALPLPAAHRHLGPMTLRDALLTLAGPAWELHADERARQICFEQPGGSATAEHAHEPPVAEAVQTFPLMPSVSGGQP</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="52" xmlns="http://uniprot.org/uniprot">
    <accession>A9C302</accession>
    <name>A9C302_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Putative secreted protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Daci_4175</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="4" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX36806.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012205984.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_4175"/>
    <dbReference type="PRIDE" id="A9C302"/>
    <dbReference type="EnsemblBacteria" id="ABX36806">
        <property type="protein sequence ID" value="ABX36806"/>
        <property type="gene ID" value="Daci_4175"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_4175"/>
    <dbReference type="eggNOG" id="ENOG502Z7PS">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_100592_0_0_4"/>
    <dbReference type="OMA" id="VRWEGDP"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR021548">
        <property type="entry name" value="DUF2895"/>
    </dbReference>
    <dbReference type="Pfam" id="PF11444">
        <property type="entry name" value="DUF2895"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR03746">
        <property type="entry name" value="conj_TIGR03746"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="2" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="20"/>
            <end position="39"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="203"/>
            <end position="230"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ABX36806.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="230" mass="25926" checksum="53B12D4E335E0E60" modified="2008-01-15" version="1">MSRFKNEITHLQAHIKTLRLGAGALVIVALVMGGGWWSAPRDLTIHVPPDLRSGSTRKWWEVPPESVYAFTFYVFQTLNRWPTNGEEDYPRNLHTLSPYLTPSCQAFLKADYDYRRSTGELRQRVRGIYEIPGRSYGDNPTARVRVISDRDWVVTLDISADEYYGAEQVKRALVRYPVKVARVDVDPARNPFGLVIDCYEGTPQRISAPEPTRPVPGGLTPQAPQGGNSP</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="59" xmlns="http://uniprot.org/uniprot">
    <accession>A9C356</accession>
    <name>A9C356_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="8">Tannase and feruloyl esterase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="8" type="ordered locus">Daci_4538</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="9" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the tannase family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX37167.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012206337.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_4538"/>
    <dbReference type="PRIDE" id="A9C356"/>
    <dbReference type="EnsemblBacteria" id="ABX37167">
        <property type="protein sequence ID" value="ABX37167"/>
        <property type="gene ID" value="Daci_4538"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_4538"/>
    <dbReference type="eggNOG" id="COG1073">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_014819_4_0_4"/>
    <dbReference type="OMA" id="YWTGCSQ"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0052689">
        <property type="term" value="F:carboxylic ester hydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.1820">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029058">
        <property type="entry name" value="AB_hydrolase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011118">
        <property type="entry name" value="Tannase/feruloyl_esterase"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33938">
        <property type="entry name" value="PTHR33938"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07519">
        <property type="entry name" value="Tannase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53474">
        <property type="entry name" value="SSF53474"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-0106">Calcium</keyword>
    <keyword evidence="4" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="3" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0719">Serine esterase</keyword>
    <keyword evidence="7" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="7">
        <location>
            <begin position="1"/>
            <end position="28"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5002733320" evidence="7">
        <location>
            <begin position="29"/>
            <end position="569"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="6">
        <location>
            <begin position="521"/>
            <end position="541"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00006249"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022487"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022837"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="ABX37167.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="569" mass="59090" checksum="1FEC8FA90D4B7E19" modified="2008-01-15" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="62" xmlns="http://uniprot.org/uniprot">
    <accession>A9BLF5</accession>
    <name>A9BLF5_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="6">Porin Gram-negative type</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ordered locus">Daci_3809</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="7" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX36440.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012205634.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_3809"/>
    <dbReference type="PRIDE" id="A9BLF5"/>
    <dbReference type="EnsemblBacteria" id="ABX36440">
        <property type="protein sequence ID" value="ABX36440"/>
        <property type="gene ID" value="Daci_3809"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_3809"/>
    <dbReference type="eggNOG" id="COG3203">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_038238_2_0_4"/>
    <dbReference type="OMA" id="KSACREW"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046930">
        <property type="term" value="C:pore complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015288">
        <property type="term" value="F:porin activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006811">
        <property type="term" value="P:ion transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd00342">
        <property type="entry name" value="gram_neg_porins"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.160.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR033900">
        <property type="entry name" value="Gram_neg_porin_domain"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023614">
        <property type="entry name" value="Porin_dom_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13609">
        <property type="entry name" value="Porin_4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0406">Ion transport</keyword>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-0626">Porin</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4" id="KW-0732">Signal</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1134">Transmembrane beta strand</keyword>
    <keyword evidence="3" id="KW-0813">Transport</keyword>
    <feature type="signal peptide" evidence="4">
        <location>
            <begin position="1"/>
            <end position="38"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5002735586" evidence="4">
        <location>
            <begin position="39"/>
            <end position="392"/>
        </location>
    </feature>
    <feature type="domain" description="Porin_4" evidence="5">
        <location>
            <begin position="28"/>
            <end position="359"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022452"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023065"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023114"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="Pfam" id="PF13609"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="ABX36440.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="392" mass="40643" checksum="251D7919BF54C35B" modified="2008-01-15" version="1">MKRTLKSIPQPPAKRPLRACLARLAPLAMLAAAGGAQAQTGSSVTLYGHLDTGIEHLTNVQGGGSLTRMPGLTGTAPSRWGLRGSEDLGGGLSAVFALESGFGPDAGTFNQGGRGFGRQAWVGLSGGWGSVSLGRNYTMLYWALFDADLLGPNAFGLSSLDSYIPNTRTDNSLAYRGRFGAWSLGAAYSLGRDAVNAGPSPAGTNCAGESATDRQACRQWSAMLKYDTAPWGFALAVDEMRGGAGAFAGLTRSDLKDRRIMLNGYAALSPTIKLGAGLMRRDNDAAQAASASNGATPRSTLAWGGLSWSPSAAVVVDGQLQQLRYAQGGDRSTLLALRATYRFSKRTAVYAQAARIDNGQRLAISVSSAAAGGSPLAGASQTGLMLGLRHSF</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="56" xmlns="http://uniprot.org/uniprot">
    <accession>A9BLG6</accession>
    <name>A9BLG6_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Band 7 protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Daci_3820</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="4" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX36451.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012205645.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_3820"/>
    <dbReference type="PRIDE" id="A9BLG6"/>
    <dbReference type="EnsemblBacteria" id="ABX36451">
        <property type="protein sequence ID" value="ABX36451"/>
        <property type="gene ID" value="Daci_3820"/>
    </dbReference>
    <dbReference type="GeneID" id="60688120"/>
    <dbReference type="KEGG" id="dac:Daci_3820"/>
    <dbReference type="eggNOG" id="COG2268">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_026777_0_0_4"/>
    <dbReference type="OMA" id="ERQYDSE"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036013">
        <property type="entry name" value="Band_7/SPFH_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027705">
        <property type="entry name" value="Flotillin_fam"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR13806">
        <property type="entry name" value="PTHR13806"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF117892">
        <property type="entry name" value="SSF117892"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="2" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="2" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="6"/>
            <end position="30"/>
        </location>
    </feature>
    <feature type="coiled-coil region" evidence="1">
        <location>
            <begin position="235"/>
            <end position="293"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ABX36451.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="691" mass="76120" checksum="A75488EEDB65DCD7" modified="2008-01-15" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="78" xmlns="http://uniprot.org/uniprot">
    <accession>A9BLI2</accession>
    <name>A9BLI2_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Transcriptional regulator, GntR family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ordered locus">Daci_3836</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="6" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX36467.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_3836"/>
    <dbReference type="PRIDE" id="A9BLI2"/>
    <dbReference type="EnsemblBacteria" id="ABX36467">
        <property type="protein sequence ID" value="ABX36467"/>
        <property type="gene ID" value="Daci_3836"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_3836"/>
    <dbReference type="eggNOG" id="COG1802">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_017584_5_2_4"/>
    <dbReference type="OMA" id="WQVKPFD"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003700">
        <property type="term" value="F:DNA-binding transcription factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd07377">
        <property type="entry name" value="WHTH_GntR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.120.530">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011711">
        <property type="entry name" value="GntR_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008920">
        <property type="entry name" value="TF_FadR/GntR_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000524">
        <property type="entry name" value="Tscrpt_reg_HTH_GntR"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036390">
        <property type="entry name" value="WH_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07729">
        <property type="entry name" value="FCD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00392">
        <property type="entry name" value="GntR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00895">
        <property type="entry name" value="FCD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00345">
        <property type="entry name" value="HTH_GNTR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46785">
        <property type="entry name" value="SSF46785"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48008">
        <property type="entry name" value="SSF48008"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50949">
        <property type="entry name" value="HTH_GNTR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0804">Transcription</keyword>
    <keyword evidence="1" id="KW-0805">Transcription regulation</keyword>
    <feature type="domain" description="HTH gntR-type" evidence="4">
        <location>
            <begin position="89"/>
            <end position="156"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023015"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023163"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="PROSITE" id="PS50949"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="ABX36467.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="312" mass="34805" checksum="76F72397B32A2DF5" modified="2008-01-15" version="1">MDHCPLPACKPVREIAAAIGVYPVTGRKSARCRRHGFALFHRPAPGPGWPWLSPTAGAVFSNRHGSRMSIAVASPPVCETRQGPASSAHSLAAQIYACLKNDIFDFRLLPGDRFSEGEIATRMQVSRTPVRQALFWLQRDGYVDVHFKSGWQIKAFDFKYFEDLYEVRTLMETSAVASLVGESLKSLQPLREVWCVPEEQRETDPAVVASLDEAFHTGLVAATGNQEMARIHLDITERIRIIRRLDVIKLPRVSATYDDHAAILAAIEAGDAARAQSCLREHIADSRAEVKRITFYMLQTARERYGALTQMA</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="59" xmlns="http://uniprot.org/uniprot">
    <accession>A9BLN1</accession>
    <name>A9BLN1_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="3">AMP-dependent synthetase and ligase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Daci_3885</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="4" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX36516.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012205710.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_3885"/>
    <dbReference type="PRIDE" id="A9BLN1"/>
    <dbReference type="EnsemblBacteria" id="ABX36516">
        <property type="protein sequence ID" value="ABX36516"/>
        <property type="gene ID" value="Daci_3885"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_3885"/>
    <dbReference type="eggNOG" id="COG0318">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_000022_59_0_4"/>
    <dbReference type="OMA" id="MPKVAQH"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016874">
        <property type="term" value="F:ligase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.300.30">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.12780">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025110">
        <property type="entry name" value="AMP-bd_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045851">
        <property type="entry name" value="AMP-bd_C_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020845">
        <property type="entry name" value="AMP-binding_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000873">
        <property type="entry name" value="AMP-dep_Synth/Lig"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR042099">
        <property type="entry name" value="ANL_N_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00501">
        <property type="entry name" value="AMP-binding"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13193">
        <property type="entry name" value="AMP-binding_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00455">
        <property type="entry name" value="AMP_BINDING"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-0436">Ligase</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="AMP-binding" evidence="1">
        <location>
            <begin position="49"/>
            <end position="476"/>
        </location>
    </feature>
    <feature type="domain" description="AMP-binding_C" evidence="2">
        <location>
            <begin position="486"/>
            <end position="561"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF00501"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF13193"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ABX36516.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="638" mass="67347" checksum="4AE68B9D39D973EB" modified="2008-01-15" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="78" xmlns="http://uniprot.org/uniprot">
    <accession>A9BLN3</accession>
    <name>A9BLN3_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Transcriptional regulator, LysR family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Daci_3887</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="4" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the LysR transcriptional regulatory family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX36518.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012205712.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_3887"/>
    <dbReference type="PRIDE" id="A9BLN3"/>
    <dbReference type="EnsemblBacteria" id="ABX36518">
        <property type="protein sequence ID" value="ABX36518"/>
        <property type="gene ID" value="Daci_3887"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_3887"/>
    <dbReference type="eggNOG" id="COG0583">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_039613_16_2_4"/>
    <dbReference type="OMA" id="FKAAHPK"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003700">
        <property type="term" value="F:DNA-binding transcription factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005119">
        <property type="entry name" value="LysR_subst-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000847">
        <property type="entry name" value="Tscrpt_reg_HTH_LysR"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036390">
        <property type="entry name" value="WH_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00126">
        <property type="entry name" value="HTH_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03466">
        <property type="entry name" value="LysR_substrate"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46785">
        <property type="entry name" value="SSF46785"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50931">
        <property type="entry name" value="HTH_LYSR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HTH lysR-type" evidence="2">
        <location>
            <begin position="1"/>
            <end position="58"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00009437"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS50931"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ABX36518.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="316" mass="35261" checksum="D283D5F6F3520D69" modified="2008-01-15" version="1">MDFLAFNILVQIIEHGNLSQAAKFLNMSRANVSYHLARLEKSLGASLLRRTPQGVEATEVGQRIYRHARNILNETELVRELAQSSTDDISGKIGLSVPTGYGHLVMAPWLIEFKRAHPQVVLDIRLENFIDNLLKDSVDIAIRVMSDPPPMLVARDMGPVRYSLCASSDWLRSHRLPETPSELSRTPLITSGGESGKVRLQIARNGQPLEELDITPTLMSRSYPFLCDCITGGLGVGLVPDYMVRSQVEDGRVVLAMQDYEFSINQGRMFMLYMPNRFQSGAARALIDFLSDRMGLARIIRPGDLPDTAQALRPPE</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="60" xmlns="http://uniprot.org/uniprot">
    <accession>A9BLR4</accession>
    <name>A9BLR4_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Daci_4222</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="2" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX36853.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012206025.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_4222"/>
    <dbReference type="PRIDE" id="A9BLR4"/>
    <dbReference type="EnsemblBacteria" id="ABX36853">
        <property type="protein sequence ID" value="ABX36853"/>
        <property type="gene ID" value="Daci_4222"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_4222"/>
    <dbReference type="eggNOG" id="COG2513">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_027389_2_1_4"/>
    <dbReference type="OMA" id="FPFTLCA"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003824">
        <property type="term" value="F:catalytic activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd00377">
        <property type="entry name" value="ICL_PEPM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.20.20.60">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR039556">
        <property type="entry name" value="ICL/PEPM"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015813">
        <property type="entry name" value="Pyrv/PenolPyrv_Kinase-like_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR040442">
        <property type="entry name" value="Pyrv_Kinase-like_dom_sf"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51621">
        <property type="entry name" value="SSF51621"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ABX36853.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="275" mass="28769" checksum="14AAE91104E343C2" modified="2008-01-15" version="1">MTPTTEQKRATFHALHRQGCFVLPNPWDAGSARMLQGLGFKALASTSSGHAWSLGQPDGAISREMTLEHLRSLVAATDLPVNADFESGFGLGPQEVAESVRMAVDTGVAGLSIEDSSGDAANPLRSIEEAVARLRAARAAIDEAGGGTLLVGRAENFFVGRPDLDDTIARLKAYAEAGADCLYAPGIRSAEQIRAVVAAVAPKPVNLLIGGASEWSLQDAQAMGVRRISVGGALARAAWGGFLHAARSIAETGRFDAFAQATPGAELNRFFQGKD</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="76" xmlns="http://uniprot.org/uniprot">
    <accession>A9BLY7</accession>
    <name>A9BLY7_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="8">Sodium:dicarboxylate symporter</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="8" type="ordered locus">Daci_4295</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="9" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX36926.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_4295"/>
    <dbReference type="PRIDE" id="A9BLY7"/>
    <dbReference type="EnsemblBacteria" id="ABX36926">
        <property type="protein sequence ID" value="ABX36926"/>
        <property type="gene ID" value="Daci_4295"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_4295"/>
    <dbReference type="eggNOG" id="COG1301">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_019375_7_0_4"/>
    <dbReference type="OMA" id="KPVPCYN"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015293">
        <property type="term" value="F:symporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.3860.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001991">
        <property type="entry name" value="Na-dicarboxylate_symporter"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036458">
        <property type="entry name" value="Na:dicarbo_symporter_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR42865">
        <property type="entry name" value="PTHR42865"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00375">
        <property type="entry name" value="SDF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF118215">
        <property type="entry name" value="SSF118215"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="5 7" id="KW-0472">Membrane</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 7" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="4 7" id="KW-1133">Transmembrane helix</keyword>
    <keyword evidence="2" id="KW-0813">Transport</keyword>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="61"/>
            <end position="83"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="103"/>
            <end position="127"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="139"/>
            <end position="158"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="208"/>
            <end position="225"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="254"/>
            <end position="279"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="285"/>
            <end position="304"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="342"/>
            <end position="359"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="365"/>
            <end position="398"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="410"/>
            <end position="433"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="6">
        <location>
            <begin position="467"/>
            <end position="490"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022448"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="ABX36926.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="490" mass="52472" checksum="0321D6A319A26C2B" modified="2008-01-15" version="1">MRLARSVHCQAQATCIVVVYAGRQARLRCGIRPVAGSRGGRARLQDRNTSNEKIRMKFNRLTTMVLVAMVLGVLVGYACNSYAPTPEAAKEIASYFGILTDVFLRMIKMIIAPLVFATLVSGLANMGDAKAVGRIGGRALGWFIVASFCSLAIGLIYANVLQPGHGLSVALPSSAEGLNLKTSALNLKDFIAHVFPKNIFEAMATNEVLQILVFALFFGIALGNLHNQAARSMVGLMDEVVHIMLKVTDYVMRFAPVGVFGAVAGTITIHGLGMLSVFGKFMLCFYLALATLWVLLIVAGYCVLGRDIFRLLSLIRGPLLVGFSTASSESTYPKLMEQLEKFGIKPRIIGFVLPLGYSFNLDGSMVYTTFLAIFIAQAYGIDMTLTAQITMLLVLMVSSKGIAGVPRASLVVVAAVLPMFGLPEAGILLILGIDHFLDMGRTLTNVLGNAIATAVVAKWEGAVDPTAATDDDESLLPTDHSEQGRPAVSA</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="76" xmlns="http://uniprot.org/uniprot">
    <accession>A9BLZ1</accession>
    <name>A9BLZ1_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Regulatory protein MerR</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Daci_4299</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="4" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX36930.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_4299"/>
    <dbReference type="PRIDE" id="A9BLZ1"/>
    <dbReference type="EnsemblBacteria" id="ABX36930">
        <property type="protein sequence ID" value="ABX36930"/>
        <property type="gene ID" value="Daci_4299"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_4299"/>
    <dbReference type="eggNOG" id="COG0789">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="eggNOG" id="COG5012">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_045945_3_0_4"/>
    <dbReference type="OMA" id="IWEKRYN"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0031419">
        <property type="term" value="F:cobalamin binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006355">
        <property type="term" value="P:regulation of transcription, DNA-templated"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.1240.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006158">
        <property type="entry name" value="Cobalamin-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036724">
        <property type="entry name" value="Cobalamin-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009061">
        <property type="entry name" value="DNA-bd_dom_put_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000551">
        <property type="entry name" value="MerR-type_HTH_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036594">
        <property type="entry name" value="Meth_synthase_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02310">
        <property type="entry name" value="B12-binding"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13411">
        <property type="entry name" value="MerR_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00422">
        <property type="entry name" value="HTH_MERR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46955">
        <property type="entry name" value="SSF46955"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52242">
        <property type="entry name" value="SSF52242"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51332">
        <property type="entry name" value="B12_BINDING"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50937">
        <property type="entry name" value="HTH_MERR_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HTH merR-type" evidence="1">
        <location>
            <begin position="25"/>
            <end position="83"/>
        </location>
    </feature>
    <feature type="domain" description="B12-binding" evidence="2">
        <location>
            <begin position="208"/>
            <end position="333"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS50937"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS51332"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ABX36930.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="337" mass="36346" checksum="8D53BE1D7D4A5A36" modified="2008-01-15" version="1">MTGRFVPFRSMTPLSDPLPLAPGPGLPISAVERETGLAKDTLRVWERRYGFPRPERDSAGDRRYPADQVRQLTLIRRLMDTGLRPSKLMGVDLDGLQALLARADTSPGKDLSRTNSENAADYDRFAPMLNAIAAHDPAQLRHCLSLAQSRMGLAGFVTTLVAPLTTAVGDFWAQGRFEVFEEHLYTEVLTGVLRQAIVSLAPPSPPSVPKVLLTTLPQEMHGLGLLMVEALLALEGCNCVSLGTQTPIGDVAQAARAHRADIVGLSFSSSHNGAMAQACLGELRSHLPPAIELWAGGACPALYSSPVAGITPVRHLTDLQPLVARWRQTTRTPRTSA</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="52" xmlns="http://uniprot.org/uniprot">
    <accession>A9BM91</accession>
    <name>A9BM91_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Fatty acid hydroxylase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Daci_4807</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="4" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX37436.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012206606.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_4807"/>
    <dbReference type="PRIDE" id="A9BM91"/>
    <dbReference type="EnsemblBacteria" id="ABX37436">
        <property type="protein sequence ID" value="ABX37436"/>
        <property type="gene ID" value="Daci_4807"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_4807"/>
    <dbReference type="eggNOG" id="COG3000">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_033631_3_1_4"/>
    <dbReference type="OMA" id="HQIHHSP"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005506">
        <property type="term" value="F:iron ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016491">
        <property type="term" value="F:oxidoreductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008610">
        <property type="term" value="P:lipid biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006694">
        <property type="entry name" value="Fatty_acid_hydroxylase"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04116">
        <property type="entry name" value="FA_hydroxylase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="7"/>
            <end position="26"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="38"/>
            <end position="56"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="76"/>
            <end position="96"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="145"/>
            <end position="169"/>
        </location>
    </feature>
    <feature type="domain" description="Fatty acid hydroxylase" evidence="2">
        <location>
            <begin position="84"/>
            <end position="213"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF04116"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ABX37436.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="249" mass="28374" checksum="DF7F0788AA76EF8B" modified="2008-01-15" version="1">MLQMWEFAAYPLLALMFVGIFTREVIAPASRNHCDRRWLLLSTLLGLGTLATTLAVGHLFSDSIRRHALLDVGRQWPAWAVGALSFVLTSFVFYWWHRATHRSDTLWRLFHQLHHSAPRVEALTAFFAHPMDTAAAVLLSALSSYWVLGASPLAAAFAIGLTGAFDLFLHADIRTPRWLGYIVQRPEMHTVHHQYGHHAQNYGLPVWDLLFGTWANPAERVERLGFDADKAERVTDMLRWQDVHKQNSP</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="50" xmlns="http://uniprot.org/uniprot">
    <accession>A9BMD2</accession>
    <name>A9BMD2_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Zinc finger SWIM domain protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ordered locus">Daci_4848</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="5" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX37477.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012206647.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_4848"/>
    <dbReference type="PRIDE" id="A9BMD2"/>
    <dbReference type="EnsemblBacteria" id="ABX37477">
        <property type="protein sequence ID" value="ABX37477"/>
        <property type="gene ID" value="Daci_4848"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_4848"/>
    <dbReference type="eggNOG" id="COG4715">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_051328_0_0_4"/>
    <dbReference type="OMA" id="KFPCKHG"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008270">
        <property type="term" value="F:zinc ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007527">
        <property type="entry name" value="Znf_SWIM"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04434">
        <property type="entry name" value="SWIM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50966">
        <property type="entry name" value="ZF_SWIM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0862">Zinc</keyword>
    <keyword evidence="1" id="KW-0863">Zinc-finger</keyword>
    <feature type="domain" description="SWIM-type" evidence="3">
        <location>
            <begin position="55"/>
            <end position="88"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="1"/>
            <end position="34"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="109"/>
            <end position="145"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00325"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="PROSITE" id="PS50966"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="ABX37477.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="481" mass="52344" checksum="6B7DBDCF4692C2DE" modified="2008-01-15" version="1">MSRVLGTESEVLALSPDASSSKAAKGLQSPAKWPSMGANDVAVWGECQGSGSKPYQTQVDLSGPSFKCSCPSRKFPCKHGLALMLMRAGGQVPEGGDPPAWVQTWLDSRQEKAEKKEAKAAAAAAEPPPDPEVAAKQQARREDKRWDKVEAGLQELSLWMQDMVRAGLANQASDTQMRQRWNNMAARMVDAQATGMAARIKDCRDLVDSHRDWPRDMLVQLGHWQLIIDAVRRRESLSPEVKADVMAALGWPMDKAEVQARGQLVEDEWLVAGLRMIEREGRLMERRVWLQGQRTGRMALVLDYAQGGRGFESAWVPGHRYGCALNFYPGHAPLRAIAANGNGPALPADGASPLATSAGGDVLQLLGQRIAANPLQATQPLCQDRLRLVPAQGQWFAAWPQALDASPVTLGTAAPVQPVPVAIDDAEAWRLLALSGGAPMQLFGEWEPGPAVGRWRLLSAWQAREGETAQQCIWQNQGDPV</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="78" xmlns="http://uniprot.org/uniprot">
    <accession>A9BMG6</accession>
    <name>A9BMG6_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="6">Aldehyde Dehydrogenase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ordered locus">Daci_4882</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="7" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="4">Belongs to the aldehyde dehydrogenase family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX37511.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012206681.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_4882"/>
    <dbReference type="PRIDE" id="A9BMG6"/>
    <dbReference type="EnsemblBacteria" id="ABX37511">
        <property type="protein sequence ID" value="ABX37511"/>
        <property type="gene ID" value="Daci_4882"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_4882"/>
    <dbReference type="eggNOG" id="COG1012">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_005391_0_2_4"/>
    <dbReference type="OMA" id="VTGPGHT"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016620">
        <property type="term" value="F:oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.309.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.605.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016161">
        <property type="entry name" value="Ald_DH/histidinol_DH"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016163">
        <property type="entry name" value="Ald_DH_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016160">
        <property type="entry name" value="Ald_DH_CS_CYS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029510">
        <property type="entry name" value="Ald_DH_CS_GLU"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016162">
        <property type="entry name" value="Ald_DH_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015590">
        <property type="entry name" value="Aldehyde_DH_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00171">
        <property type="entry name" value="Aldedh"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53720">
        <property type="entry name" value="SSF53720"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00070">
        <property type="entry name" value="ALDEHYDE_DEHYDR_CYS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00687">
        <property type="entry name" value="ALDEHYDE_DEHYDR_GLU"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="1 4" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Aldedh" evidence="5">
        <location>
            <begin position="14"/>
            <end position="472"/>
        </location>
    </feature>
    <feature type="active site" evidence="2">
        <location>
            <position position="246"/>
        </location>
    </feature>
    <feature type="active site" evidence="3">
        <location>
            <position position="280"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023002"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU10007"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU10008"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="RuleBase" id="RU003345"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="Pfam" id="PF00171"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="ABX37511.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="477" mass="51001" checksum="9120DA1AD7E1402C" modified="2008-01-15" version="1">MQYHYIGNASVPTESGRTIPVLDPSDGQAFDELQRGSPQDIDLAVRSARECQDSVWSKLSAAERGRLLMRLSGSVLQHADELTAIEQRDCGKPTRQARADVLALARYFEFYAGACDKLHGETLPYQQGYSALTWREPHGVTGHIVPWNYPMQILGRSVGAALAAGNTCVVKPSEDACLSVLRVARLATEAGFPAGAFNVVTGLGHEVGEALARHPGVDHLSFTGSPGVGTLIQQAAAERHCPVTLELGGKSPQIVFADADLDAAVPAIVNAIVQNAGQTCSAGSRVLIDSLIYEPLLERLGQAFEALRVGPAAMDLDLGPLIRASQQQRVWDFLSDAQVAGIAVVAQGQIVEDAPDSGFYQAPTLLRDVPPEHRLAQEEIFGPVLCAMPFHDEDHAVQLANGTAYGLVAGLWTRDGARQLRLARRLRCGQVFINNYGAGGGVELPFGGVKSSGHGREKGFEALYGFTTLKTVAIRHG</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="53" xmlns="http://uniprot.org/uniprot">
    <accession>A9BN13</accession>
    <name>A9BN13_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Daci_5079</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="2" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX37708.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012206878.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_5079"/>
    <dbReference type="PRIDE" id="A9BN13"/>
    <dbReference type="EnsemblBacteria" id="ABX37708">
        <property type="protein sequence ID" value="ABX37708"/>
        <property type="gene ID" value="Daci_5079"/>
    </dbReference>
    <dbReference type="GeneID" id="60689430"/>
    <dbReference type="KEGG" id="dac:Daci_5079"/>
    <dbReference type="eggNOG" id="COG2308">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_017048_2_0_4"/>
    <dbReference type="OMA" id="VLTPGMY"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025841">
        <property type="entry name" value="CP_ATPgrasp_2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016450">
        <property type="entry name" value="UCP005522"/>
    </dbReference>
    <dbReference type="Pfam" id="PF14403">
        <property type="entry name" value="CP_ATPgrasp_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF005522">
        <property type="entry name" value="UCP005522"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ABX37708.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="489" mass="54320" checksum="0E59F0796BBDE365" modified="2008-01-15" version="1">MHPFDEMYTMTPFDGSDVRLHYKDYAQWLARQSEQTLRARSAEAEIIFRRVGITFAVYGDKDESGAGNERLIPFDLIPRVIPAHEWSRMQAGLVQRVTALNRFLHDVYHDQEILRAGLVPRELVLNNSQYRPEMRGLAVQGGIYAHIAGIDIVRAANAQGEGVYYVLEDNLRVPSGVSYMLENRRMMMRLFPDLFSRHPVEPVAHYPDMLLETLRASAPAGTPEPTVVVLTPGMHNSAYFEHAFLAQQMGVELVEGQDLVVDKDVVYMRTTRGPQRVDVIYRRVDDDFLDPEVFRPTSTLGCPGLMRAYRAGNVSICNAAGTGVADDKSVYPYVPEMIRFYLGEEPILQNVPTWLCRKPDDLRYVLDHLDELVVKEVHGAGGYGMLIGPAASRGEIEDFRRALIANPGGYIAQPTLALSTCPTLVEQGIAPRHIDLRPFVLSGNQVRMVAGGLTRVALKEGSLVVNSSQGGGTKDTWVLGAGESNEGGH</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="69" xmlns="http://uniprot.org/uniprot">
    <accession>A9BN16</accession>
    <name>A9BN16_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="8">Methyl-accepting chemotaxis sensory transducer</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="8" type="ordered locus">Daci_5082</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="9" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the methyl-accepting chemotaxis (MCP) protein family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX37711.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012206881.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_5082"/>
    <dbReference type="PRIDE" id="A9BN16"/>
    <dbReference type="EnsemblBacteria" id="ABX37711">
        <property type="protein sequence ID" value="ABX37711"/>
        <property type="gene ID" value="Daci_5082"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_5082"/>
    <dbReference type="eggNOG" id="COG0840">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_000445_107_16_4"/>
    <dbReference type="OMA" id="AAMEQFT"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004888">
        <property type="term" value="F:transmembrane signaling receptor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006935">
        <property type="term" value="P:chemotaxis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0007165">
        <property type="term" value="P:signal transduction"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004090">
        <property type="entry name" value="Chemotax_Me-accpt_rcpt"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003660">
        <property type="entry name" value="HAMP_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR024478">
        <property type="entry name" value="HlyB_4HB_MCP"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004089">
        <property type="entry name" value="MCPsignal_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12729">
        <property type="entry name" value="4HB_MCP_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00672">
        <property type="entry name" value="HAMP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00015">
        <property type="entry name" value="MCPsignal"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00260">
        <property type="entry name" value="CHEMTRNSDUCR"/>
    </dbReference>
    <dbReference type="SMART" id="SM00304">
        <property type="entry name" value="HAMP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00283">
        <property type="entry name" value="MA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50111">
        <property type="entry name" value="CHEMOTAXIS_TRANSDUC_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50885">
        <property type="entry name" value="HAMP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="5" id="KW-0472">Membrane</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0807">Transducer</keyword>
    <keyword evidence="5" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="5" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="185"/>
            <end position="209"/>
        </location>
    </feature>
    <feature type="domain" description="HAMP" evidence="7">
        <location>
            <begin position="210"/>
            <end position="264"/>
        </location>
    </feature>
    <feature type="domain" description="Methyl-accepting transducer" evidence="6">
        <location>
            <begin position="269"/>
            <end position="498"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="4">
        <location>
            <begin position="533"/>
            <end position="589"/>
        </location>
    </feature>
    <feature type="coiled-coil region" evidence="3">
        <location>
            <begin position="469"/>
            <end position="507"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00029447"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00284"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="PROSITE" id="PS50111"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="PROSITE" id="PS50885"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="ABX37711.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="589" mass="61258" checksum="738C3FCA4BA18038" modified="2008-01-15" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="65" xmlns="http://uniprot.org/uniprot">
    <accession>A9BNE9</accession>
    <name>A9BNE9_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="4">Molybdopterin synthase sulfur carrier subunit</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="5" type="ordered locus">Daci_5215</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="6" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="pathway">
        <text evidence="1">Cofactor biosynthesis; molybdopterin biosynthesis.</text>
    </comment>
    <comment type="similarity">
        <text evidence="3">Belongs to the MoaD family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX37844.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012207014.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_5215"/>
    <dbReference type="PRIDE" id="A9BNE9"/>
    <dbReference type="EnsemblBacteria" id="ABX37844">
        <property type="protein sequence ID" value="ABX37844"/>
        <property type="gene ID" value="Daci_5215"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_5215"/>
    <dbReference type="eggNOG" id="COG1977">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_114601_4_0_4"/>
    <dbReference type="OMA" id="DRVHAKP"/>
    <dbReference type="UniPathway" id="UPA00344"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006777">
        <property type="term" value="P:Mo-molybdopterin cofactor biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.10.20.30">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012675">
        <property type="entry name" value="Beta-grasp_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010038">
        <property type="entry name" value="MoaD_arc-typ"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR044672">
        <property type="entry name" value="MOCS2A"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016155">
        <property type="entry name" value="Mopterin_synth/thiamin_S_b"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003749">
        <property type="entry name" value="ThiS/MoaD-like"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33359">
        <property type="entry name" value="PTHR33359"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02597">
        <property type="entry name" value="ThiS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54285">
        <property type="entry name" value="SSF54285"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01687">
        <property type="entry name" value="moaD_arch"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2" id="KW-0501">Molybdenum cofactor biosynthesis</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00005046"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023150"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00024200"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00024247"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="ABX37844.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="91" mass="9261" checksum="DAB6F5A39A2F238A" modified="2008-01-15" version="1">MSQAVPIAITITVRYFASIREALGTGSETLSTEADTVGALREELIARGGAAAEALAPGKAVRMALNQVLCDAGAAIRQGDEVAFFPPVTGG</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="64" xmlns="http://uniprot.org/uniprot">
    <accession>A9BNF4</accession>
    <name>A9BNF4_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Aminotransferase class I and II</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_5220</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX37849.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012207019.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_5220"/>
    <dbReference type="PRIDE" id="A9BNF4"/>
    <dbReference type="EnsemblBacteria" id="ABX37849">
        <property type="protein sequence ID" value="ABX37849"/>
        <property type="gene ID" value="Daci_5220"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_5220"/>
    <dbReference type="eggNOG" id="COG0436">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_017584_4_2_4"/>
    <dbReference type="OMA" id="FGFECPP"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030170">
        <property type="term" value="F:pyridoxal phosphate binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008483">
        <property type="term" value="F:transaminase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009058">
        <property type="term" value="P:biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.640.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.1150.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004839">
        <property type="entry name" value="Aminotransferase_I/II"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015424">
        <property type="entry name" value="PyrdxlP-dep_Trfase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015421">
        <property type="entry name" value="PyrdxlP-dep_Trfase_major"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015422">
        <property type="entry name" value="PyrdxlP-dep_Trfase_small"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00155">
        <property type="entry name" value="Aminotran_1_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53383">
        <property type="entry name" value="SSF53383"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0032">Aminotransferase</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Aminotran_1_2" evidence="1">
        <location>
            <begin position="34"/>
            <end position="395"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF00155"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX37849.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="411" mass="45644" checksum="517438851CF9FDF9" modified="2008-01-15" version="1">MKTVLKSAKLANVCYDIRGPIMDAAKKMEEDGQKIIKLNIGNLAVFGFDAPEEVQQDMIRNLPNSAGYSDSKGIFAARKAVMHETQRQGILGVTLDDIYLGNGASELISLATNALLDDGDEMLLPAPDYPLWTAVTSLSGGTPVHYMCDESNGWMPDLEDIRAKITPRTKGIVVINPNNPTGALYSKQLLQSIVALAREHGLVIFADEVYDKVLYDDVVHTPLASLSTDVLTLTFNSLSKAYRSCGYRAGWMVVSGDKKAARDYIEGLNMLSNMRLCANVPGQWAVQTALGGHQSIDELVQEGGRLRVQRDLAHKLITEIPGVSCVKPQAALYMFPRLDPEIYPIKDDQAFFLEVLQETKVMLVQGTGFNWPHPDHFRIVFLPHDTDLREAIRRLAVFLEKYRKRHGTDRG</sequence>
</entry>
<entry dataset="Swiss-Prot" created="2009-03-24" modified="2022-08-03" version="73" xmlns="http://uniprot.org/uniprot">
    <accession>A9BNV0</accession>
    <name>RL33_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">50S ribosomal protein L33</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="1" type="primary">rpmG</name>
        <name type="ordered locus">Daci_5366</name>
    </gene>
    <organism>
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference key="1">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain>DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the bacterial ribosomal protein bL33 family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX37995.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012207164.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A9BNV0"/>
    <dbReference type="SMR" id="A9BNV0"/>
    <dbReference type="STRING" id="398578.Daci_5366"/>
    <dbReference type="PRIDE" id="A9BNV0"/>
    <dbReference type="EnsemblBacteria" id="ABX37995">
        <property type="protein sequence ID" value="ABX37995"/>
        <property type="gene ID" value="Daci_5366"/>
    </dbReference>
    <dbReference type="GeneID" id="60689714"/>
    <dbReference type="KEGG" id="dac:Daci_5366"/>
    <dbReference type="eggNOG" id="COG0267">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_190949_1_1_4"/>
    <dbReference type="OMA" id="GTGFYYT"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005840">
        <property type="term" value="C:ribosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003735">
        <property type="term" value="F:structural constituent of ribosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006412">
        <property type="term" value="P:translation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.20.28.120">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00294">
        <property type="entry name" value="Ribosomal_L33"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038584">
        <property type="entry name" value="L33_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001705">
        <property type="entry name" value="Ribosomal_L33"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018264">
        <property type="entry name" value="Ribosomal_L33_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011332">
        <property type="entry name" value="Ribosomal_zn-bd"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00471">
        <property type="entry name" value="Ribosomal_L33"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF57829">
        <property type="entry name" value="SSF57829"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01023">
        <property type="entry name" value="rpmG_bact"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00582">
        <property type="entry name" value="RIBOSOMAL_L33"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword id="KW-1185">Reference proteome</keyword>
    <keyword id="KW-0687">Ribonucleoprotein</keyword>
    <keyword id="KW-0689">Ribosomal protein</keyword>
    <feature type="chain" id="PRO_1000115128" description="50S ribosomal protein L33">
        <location>
            <begin position="1"/>
            <end position="56"/>
        </location>
    </feature>
    <evidence type="ECO:0000255" key="1">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00294"/>
        </source>
    </evidence>
    <sequence length="56" mass="6400" checksum="2563E9BFC49031E3" modified="2008-01-15" version="1">MAAKGGREKIKLESTAGTGHFYTTTKNKKTMPEKMAIMKFDPKARKHVTYKEIKLK</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="86" xmlns="http://uniprot.org/uniprot">
    <accession>A9BNW2</accession>
    <name>A9BNW2_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="6">Response regulator receiver protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ordered locus">Daci_5378</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="7" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX38007.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012207176.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_5378"/>
    <dbReference type="PRIDE" id="A9BNW2"/>
    <dbReference type="EnsemblBacteria" id="ABX38007">
        <property type="protein sequence ID" value="ABX38007"/>
        <property type="gene ID" value="Daci_5378"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_5378"/>
    <dbReference type="eggNOG" id="COG0745">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_000445_30_4_4"/>
    <dbReference type="OMA" id="DIRINVC"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000160">
        <property type="term" value="P:phosphorelay signal transduction system"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006355">
        <property type="term" value="P:regulation of transcription, DNA-templated"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011006">
        <property type="entry name" value="CheY-like_superfamily"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001867">
        <property type="entry name" value="OmpR/PhoB-type_DNA-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016032">
        <property type="entry name" value="Sig_transdc_resp-reg_C-effctor"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001789">
        <property type="entry name" value="Sig_transdc_resp-reg_receiver"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR039420">
        <property type="entry name" value="WalR-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR48111">
        <property type="entry name" value="PTHR48111"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00072">
        <property type="entry name" value="Response_reg"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00486">
        <property type="entry name" value="Trans_reg_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00448">
        <property type="entry name" value="REC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00862">
        <property type="entry name" value="Trans_reg_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46894">
        <property type="entry name" value="SSF46894"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52172">
        <property type="entry name" value="SSF52172"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51755">
        <property type="entry name" value="OMPR_PHOB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50110">
        <property type="entry name" value="RESPONSE_REGULATORY"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1 3" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="2" id="KW-0597">Phosphoprotein</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Response regulatory" evidence="4">
        <location>
            <begin position="12"/>
            <end position="124"/>
        </location>
    </feature>
    <feature type="domain" description="OmpR/PhoB-type" evidence="5">
        <location>
            <begin position="130"/>
            <end position="233"/>
        </location>
    </feature>
    <feature type="DNA-binding region" description="OmpR/PhoB-type" evidence="3">
        <location>
            <begin position="130"/>
            <end position="233"/>
        </location>
    </feature>
    <feature type="modified residue" description="4-aspartylphosphate" evidence="2">
        <location>
            <position position="61"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00169"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU01091"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="PROSITE" id="PS50110"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="PROSITE" id="PS51755"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="ABX38007.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="233" mass="25567" checksum="E09FE595B0188537" modified="2008-01-15" version="1">MQQTLEPSIEFTVAVVEDDEDIRINVCRFLTKSGLHAWGTDSAEDFYIKLLRQKADLVVVDLGLPGEDGLSLVKRLAEQEIPVVVLTARGDLDSRIAGLNAGALQYFVKPTDMNELVAGIRSQLRRNTGQPARAAAPFLTWRLDPLSACMVAPNHQIIALTSRELELLGCLMATPGTMVAKQTLIEAMGYADVDDGFHRIESQLTRLRRKTLDISGLALPVRAVFGRGLVFVP</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="73" xmlns="http://uniprot.org/uniprot">
    <accession>A9BNW7</accession>
    <name>A9BNW7_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="12">Riboflavin biosynthesis protein</fullName>
        </recommendedName>
        <domain>
            <recommendedName>
                <fullName evidence="12">Riboflavin kinase</fullName>
                <ecNumber evidence="12">2.7.1.26</ecNumber>
            </recommendedName>
            <alternativeName>
                <fullName evidence="12">Flavokinase</fullName>
            </alternativeName>
        </domain>
        <domain>
            <recommendedName>
                <fullName evidence="12">FMN adenylyltransferase</fullName>
                <ecNumber evidence="12">2.7.7.2</ecNumber>
            </recommendedName>
            <alternativeName>
                <fullName evidence="12">FAD pyrophosphorylase</fullName>
            </alternativeName>
            <alternativeName>
                <fullName evidence="12">FAD synthase</fullName>
            </alternativeName>
        </domain>
    </protein>
    <gene>
        <name evidence="14" type="ordered locus">Daci_5383</name>
    </gene>
    <organism evidence="14 15">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="14 15" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="15">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="15" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="15">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="3">Catalyzes the phosphorylation of riboflavin to FMN followed by the adenylation of FMN to FAD.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="2 12">
            <text>ATP + FMN + H(+) = diphosphate + FAD</text>
            <dbReference type="Rhea" id="RHEA:17237"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:33019"/>
            <dbReference type="ChEBI" id="CHEBI:57692"/>
            <dbReference type="ChEBI" id="CHEBI:58210"/>
            <dbReference type="EC" id="2.7.7.2"/>
        </reaction>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1 12">
            <text>ATP + riboflavin = ADP + FMN + H(+)</text>
            <dbReference type="Rhea" id="RHEA:14357"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:57986"/>
            <dbReference type="ChEBI" id="CHEBI:58210"/>
            <dbReference type="ChEBI" id="CHEBI:456216"/>
            <dbReference type="EC" id="2.7.1.26"/>
        </reaction>
    </comment>
    <comment type="pathway">
        <text evidence="4 12">Cofactor biosynthesis; FAD biosynthesis; FAD from FMN: step 1/1.</text>
    </comment>
    <comment type="pathway">
        <text evidence="5 12">Cofactor biosynthesis; FMN biosynthesis; FMN from riboflavin (ATP route): step 1/1.</text>
    </comment>
    <comment type="similarity">
        <text evidence="12">Belongs to the ribF family.</text>
    </comment>
    <dbReference type="EC" id="2.7.1.26" evidence="12"/>
    <dbReference type="EC" id="2.7.7.2" evidence="12"/>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX38012.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012207181.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_5383"/>
    <dbReference type="PRIDE" id="A9BNW7"/>
    <dbReference type="EnsemblBacteria" id="ABX38012">
        <property type="protein sequence ID" value="ABX38012"/>
        <property type="gene ID" value="Daci_5383"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_5383"/>
    <dbReference type="eggNOG" id="COG0196">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_048437_0_1_4"/>
    <dbReference type="OMA" id="HRGHQAI"/>
    <dbReference type="UniPathway" id="UPA00276">
        <property type="reaction ID" value="UER00406"/>
    </dbReference>
    <dbReference type="UniPathway" id="UPA00277">
        <property type="reaction ID" value="UER00407"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003919">
        <property type="term" value="F:FMN adenylyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008531">
        <property type="term" value="F:riboflavin kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006747">
        <property type="term" value="P:FAD biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009398">
        <property type="term" value="P:FMN biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016310">
        <property type="term" value="P:phosphorylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009231">
        <property type="term" value="P:riboflavin biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd02064">
        <property type="entry name" value="FAD_synthetase_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.30.30">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.620">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015864">
        <property type="entry name" value="FAD_synthase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023468">
        <property type="entry name" value="Riboflavin_kinase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002606">
        <property type="entry name" value="Riboflavin_kinase_bac"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015865">
        <property type="entry name" value="Riboflavin_kinase_bac/euk"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023465">
        <property type="entry name" value="Riboflavin_kinase_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014729">
        <property type="entry name" value="Rossmann-like_a/b/a_fold"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR22749">
        <property type="entry name" value="PTHR22749"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF06574">
        <property type="entry name" value="FAD_syn"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01687">
        <property type="entry name" value="Flavokinase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF004491">
        <property type="entry name" value="FAD_Synth"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00904">
        <property type="entry name" value="Flavokinase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF82114">
        <property type="entry name" value="SSF82114"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00083">
        <property type="entry name" value="ribF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="11 12" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="10 12" id="KW-0274">FAD</keyword>
    <keyword evidence="6 12" id="KW-0285">Flavoprotein</keyword>
    <keyword evidence="7 12" id="KW-0288">FMN</keyword>
    <keyword evidence="12" id="KW-0418">Kinase</keyword>
    <keyword evidence="9 12" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="12" id="KW-0548">Nucleotidyltransferase</keyword>
    <keyword evidence="15" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="8 12" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Flavokinase" evidence="13">
        <location>
            <begin position="187"/>
            <end position="330"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00000372"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00001332"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00002121"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00004726"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00005201"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022630"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022643"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00022827"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="12">
        <source>
            <dbReference type="PIRNR" id="PIRNR004491"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="13">
        <source>
            <dbReference type="SMART" id="SM00904"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="14">
        <source>
            <dbReference type="EMBL" id="ABX38012.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="15">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="349" mass="38177" checksum="C13D78D9AEF75E75" modified="2008-01-15" version="1">MKIFRGFNHPGRESACAVTIGNFDGVHRGHQAMLALLSAEAAQRGVPTCVLTFEPHPRDYFAQTLGRPEIAPARIGTLRDKLSELERCGVDQTVVLPFNQTLASQSPQAFIDEVLVAGLGAKYVLVGDDFRFGTQRAGDYAMLDAAGQRQGFDVARMNSYEVHGLRVSSTHVRAALAEGRMQDAARLLGHPYTISGHVVHGRKLGRSLAESRQGAGDGFRTLNLRFNHWKPAASGIFAVLVHGLNERPLRGVANLGVRPSLDPTDVNGGRVLLETHCLDWPGAPGGEEAYGKIIRVELLHKLHDELKYDSLDALTAGIAKDCDDARAFFATIHTPIYTETRRQTTRDRI</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-05-25" version="63" xmlns="http://uniprot.org/uniprot">
    <accession>A9BP30</accession>
    <name>A9BP30_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="6">Lysine exporter protein (LYSE/YGGA)</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ordered locus">Daci_5446</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="7" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX38075.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012207244.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_5446"/>
    <dbReference type="EnsemblBacteria" id="ABX38075">
        <property type="protein sequence ID" value="ABX38075"/>
        <property type="gene ID" value="Daci_5446"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_5446"/>
    <dbReference type="eggNOG" id="COG1280">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_079569_3_2_4"/>
    <dbReference type="OMA" id="FARMGHW"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006865">
        <property type="term" value="P:amino acid transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001123">
        <property type="entry name" value="LeuE-type"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30086">
        <property type="entry name" value="PTHR30086"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01810">
        <property type="entry name" value="LysE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF006324">
        <property type="entry name" value="LeuE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="4 5" id="KW-0472">Membrane</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 5" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="3 5" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="6"/>
            <end position="27"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="39"/>
            <end position="65"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="71"/>
            <end position="92"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="123"/>
            <end position="144"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="156"/>
            <end position="181"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="193"/>
            <end position="211"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="ABX38075.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="214" mass="22558" checksum="AE06830752F449A1" modified="2008-01-15" version="1">MPTFETLLAFFGVAVLLGLSPGPDNLFVLMQSAQRGWRVGLCVVLGLCLGLVVHTAAVALGLAALVAASPLLFTAIKLCGAAYLAWLAWGALRAVARPGEMPLAGAADPLTPARALRWVGRGVVMNLTNPKVLIFFLAFLPQFADPARGSVATQVMVLGCVFMLAALLVFGAIACCSGWFGVLLQRSVRAQNWLNRVAGLVFLGMAVRLALVQR</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="88" xmlns="http://uniprot.org/uniprot">
    <accession>A9BP52</accession>
    <name>A9BP52_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="11">ABC transporter related</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="11" type="ordered locus">Daci_5468</name>
    </gene>
    <organism evidence="11 12">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="11 12" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="12">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="12" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="12">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX38097.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012207266.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_5468"/>
    <dbReference type="PRIDE" id="A9BP52"/>
    <dbReference type="EnsemblBacteria" id="ABX38097">
        <property type="protein sequence ID" value="ABX38097"/>
        <property type="gene ID" value="Daci_5468"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_5468"/>
    <dbReference type="eggNOG" id="COG3842">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_000604_1_1_4"/>
    <dbReference type="OMA" id="RPENFHE"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043190">
        <property type="term" value="C:ATP-binding cassette (ABC) transporter complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015430">
        <property type="term" value="F:ABC-type glycerol-3-phosphate transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008643">
        <property type="term" value="P:carbohydrate transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0001407">
        <property type="term" value="P:glycerophosphodiester transmembrane transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd03301">
        <property type="entry name" value="ABC_MalK_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.50.140">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003593">
        <property type="entry name" value="AAA+_ATPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003439">
        <property type="entry name" value="ABC_transporter-like_ATP-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017871">
        <property type="entry name" value="ABC_transporter-like_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015855">
        <property type="entry name" value="ABC_transpr_MalK-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008995">
        <property type="entry name" value="Mo/tungstate-bd_C_term_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012340">
        <property type="entry name" value="NA-bd_OB-fold"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013611">
        <property type="entry name" value="Transp-assoc_OB_typ2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017922">
        <property type="entry name" value="UgpC"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43875:SF12">
        <property type="entry name" value="PTHR43875:SF12"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00005">
        <property type="entry name" value="ABC_tran"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08402">
        <property type="entry name" value="TOBE_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00382">
        <property type="entry name" value="AAA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50331">
        <property type="entry name" value="SSF50331"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00211">
        <property type="entry name" value="ABC_TRANSPORTER_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50893">
        <property type="entry name" value="ABC_TRANSPORTER_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="6 9" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="3" id="KW-0997">Cell inner membrane</keyword>
    <keyword evidence="2" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="8" id="KW-0472">Membrane</keyword>
    <keyword evidence="5 9" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="12" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4" id="KW-0762">Sugar transport</keyword>
    <keyword evidence="7" id="KW-1278">Translocase</keyword>
    <keyword evidence="1" id="KW-0813">Transport</keyword>
    <feature type="domain" description="ABC transporter" evidence="10">
        <location>
            <begin position="4"/>
            <end position="238"/>
        </location>
    </feature>
    <feature type="binding site" evidence="9">
        <location>
            <begin position="40"/>
            <end position="47"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022448"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022519"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022597"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022967"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00434"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="10">
        <source>
            <dbReference type="PROSITE" id="PS50893"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="EMBL" id="ABX38097.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="336" mass="37166" checksum="57BAC04F8B8331BA" modified="2008-01-15" version="1">MASISFRNLIKRYGQGPSANQVLHGVNAEIKDGEFVVIVGPSGCGKSTLLRMVAGLEEISDGQLLIGDKVVNDVEPAKRDIAMVFQNYALYPHMSNYENMAYGLKIAKVPPEEIKRRVDKAAKILELSHLLDRKPRQLSGGQRQRVAMGRAIVRQPKVFLFDEPLSNLDAKLRGQTRIEIQKLHAELGITSLFVTHDQVEAMTLAQRMIVMNGGVMEQFGTPEEVYHTPASTFVASFIGSPPMNLLKNAPGGTAGRILGIRPEHLVVVSEGGWEIKVDTVEMLGAERLVYGSLNGETMTVRIDEGAPFPKPGETMRVRPSEERRLHWFDAESGKRI</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="72" xmlns="http://uniprot.org/uniprot">
    <accession>A9BPF5</accession>
    <name>A9BPF5_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="8">Acyl-CoA dehydrogenase domain protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="8" type="ordered locus">Daci_0176</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="9" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>FAD</name>
            <dbReference type="ChEBI" id="CHEBI:57692"/>
        </cofactor>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the acyl-CoA dehydrogenase family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX32822.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012202115.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_0176"/>
    <dbReference type="PRIDE" id="A9BPF5"/>
    <dbReference type="EnsemblBacteria" id="ABX32822">
        <property type="protein sequence ID" value="ABX32822"/>
        <property type="gene ID" value="Daci_0176"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_0176"/>
    <dbReference type="eggNOG" id="COG1960">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_018204_0_1_4"/>
    <dbReference type="OMA" id="AMEELFW"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003995">
        <property type="term" value="F:acyl-CoA dehydrogenase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0050660">
        <property type="term" value="F:flavin adenine dinucleotide binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.540.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.110.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006089">
        <property type="entry name" value="Acyl-CoA_DH_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006091">
        <property type="entry name" value="Acyl-CoA_Oxase/DH_mid-dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR046373">
        <property type="entry name" value="Acyl-CoA_Oxase/DH_mid-dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036250">
        <property type="entry name" value="AcylCo_DH-like_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009075">
        <property type="entry name" value="AcylCo_DH/oxidase_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013786">
        <property type="entry name" value="AcylCoA_DH/ox_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037069">
        <property type="entry name" value="AcylCoA_DH/ox_N_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009100">
        <property type="entry name" value="AcylCoA_DH/oxidase_NM_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00441">
        <property type="entry name" value="Acyl-CoA_dh_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02770">
        <property type="entry name" value="Acyl-CoA_dh_M"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02771">
        <property type="entry name" value="Acyl-CoA_dh_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47203">
        <property type="entry name" value="SSF47203"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56645">
        <property type="entry name" value="SSF56645"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00072">
        <property type="entry name" value="ACYL_COA_DH_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00073">
        <property type="entry name" value="ACYL_COA_DH_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-0274">FAD</keyword>
    <keyword evidence="3" id="KW-0285">Flavoprotein</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Acyl-CoA_dh_N" evidence="7">
        <location>
            <begin position="6"/>
            <end position="117"/>
        </location>
    </feature>
    <feature type="domain" description="Acyl-CoA_dh_M" evidence="6">
        <location>
            <begin position="121"/>
            <end position="217"/>
        </location>
    </feature>
    <feature type="domain" description="Acyl-CoA_dh_1" evidence="5">
        <location>
            <begin position="230"/>
            <end position="378"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001974"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00009347"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022630"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022827"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="Pfam" id="PF00441"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="Pfam" id="PF02770"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="Pfam" id="PF02771"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="ABX32822.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="385" mass="42132" checksum="3F913B1115DDBEE3" modified="2008-01-15" version="1">MIRDQETLEALLDSVRRFVRERLVPAENEVAETDEIPESIVQEMRNLGLFGMTIPEQFGGLELTMEEEVRVLFELCQTAPAFRSVIGTTVGIGSQGILIDGTPEQQAAWLPKLATGEIMASFALTEPEAGSDAASLRTTAIRDGDHYVVNGNKRFITNAPHAGMFTLMARTDPANKGAGGVSAFIVDAKSPGISFGKNDVKMGQKGAHTCDVFFDNVRVPAANLIGLKEGQGFKTAMKVLDKGRIHIAAVSVGVAQRILRDALNYALERKQFGQPICEFQLVQAMLADSQAELYAAECMVIDAARRRDEGRNVSTEASCCKMFATEMVGRVADRAVQILGGSGYLAEFGIERFYRDVRLFRLYEGTTRIQQVIIARNMVREARAA</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="77" xmlns="http://uniprot.org/uniprot">
    <accession>A9BPP1</accession>
    <name>A9BPP1_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Glucose-methanol-choline oxidoreductase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ordered locus">Daci_0364</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="6" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="2">
            <name>FAD</name>
            <dbReference type="ChEBI" id="CHEBI:57692"/>
        </cofactor>
    </comment>
    <comment type="similarity">
        <text evidence="1">Belongs to the GMC oxidoreductase family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX33010.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_0364"/>
    <dbReference type="PRIDE" id="A9BPP1"/>
    <dbReference type="EnsemblBacteria" id="ABX33010">
        <property type="protein sequence ID" value="ABX33010"/>
        <property type="gene ID" value="Daci_0364"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_0364"/>
    <dbReference type="eggNOG" id="COG2303">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_002865_7_1_4"/>
    <dbReference type="OMA" id="NEGVGYF"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0050660">
        <property type="term" value="F:flavin adenine dinucleotide binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016614">
        <property type="term" value="F:oxidoreductase activity, acting on CH-OH group of donors"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.50.50.60">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036188">
        <property type="entry name" value="FAD/NAD-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012132">
        <property type="entry name" value="GMC_OxRdtase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000172">
        <property type="entry name" value="GMC_OxRdtase_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007867">
        <property type="entry name" value="GMC_OxRtase_C"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11552">
        <property type="entry name" value="PTHR11552"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF05199">
        <property type="entry name" value="GMC_oxred_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00732">
        <property type="entry name" value="GMC_oxred_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF000137">
        <property type="entry name" value="Alcohol_oxidase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51905">
        <property type="entry name" value="SSF51905"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00624">
        <property type="entry name" value="GMC_OXRED_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2" id="KW-0274">FAD</keyword>
    <keyword evidence="2" id="KW-0285">Flavoprotein</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="GMC_OxRdtase_N" evidence="4">
        <location>
            <begin position="319"/>
            <end position="333"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="3">
        <location>
            <begin position="1"/>
            <end position="40"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="3">
        <location>
            <begin position="598"/>
            <end position="618"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="3">
        <location>
            <begin position="1"/>
            <end position="20"/>
        </location>
    </feature>
    <feature type="binding site" evidence="2">
        <location>
            <position position="279"/>
        </location>
        <ligand>
            <name>FAD</name>
            <dbReference type="ChEBI" id="CHEBI:57692"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00010790"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="PIRSR" id="PIRSR000137-2"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="PROSITE" id="PS00624"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="ABX33010.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="618" mass="67032" checksum="E76C640CFE4AEB0B" modified="2008-01-15" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="53" xmlns="http://uniprot.org/uniprot">
    <accession>A9BQ85</accession>
    <name>A9BQ85_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ordered locus">Daci_0849</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="5" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX33495.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_0849"/>
    <dbReference type="PRIDE" id="A9BQ85"/>
    <dbReference type="EnsemblBacteria" id="ABX33495">
        <property type="protein sequence ID" value="ABX33495"/>
        <property type="gene ID" value="Daci_0849"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_0849"/>
    <dbReference type="eggNOG" id="COG3164">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_003522_4_0_4"/>
    <dbReference type="OMA" id="SLPQSDW"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR032712">
        <property type="entry name" value="AsmA_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011836">
        <property type="entry name" value="CHP02099"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025263">
        <property type="entry name" value="DUF3971"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR38690">
        <property type="entry name" value="PTHR38690"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13502">
        <property type="entry name" value="AsmA_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13116">
        <property type="entry name" value="DUF3971"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR02099">
        <property type="entry name" value="TIGR02099"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="DUF3971" evidence="2">
        <location>
            <begin position="557"/>
            <end position="851"/>
        </location>
    </feature>
    <feature type="domain" description="AsmA_2" evidence="3">
        <location>
            <begin position="1094"/>
            <end position="1347"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1344"/>
            <end position="1384"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="1359"/>
            <end position="1384"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF13116"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF13502"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="ABX33495.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="1384" mass="149672" checksum="C19B83BD83091D4F" modified="2008-01-15" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="57" xmlns="http://uniprot.org/uniprot">
    <accession>A9BQB6</accession>
    <name>A9BQB6_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="1">N-formylglutamate amidohydrolase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Daci_0880</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="2" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX33526.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012202812.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_0880"/>
    <dbReference type="PRIDE" id="A9BQB6"/>
    <dbReference type="EnsemblBacteria" id="ABX33526">
        <property type="protein sequence ID" value="ABX33526"/>
        <property type="gene ID" value="Daci_0880"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_0880"/>
    <dbReference type="eggNOG" id="COG3741">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_069318_1_0_4"/>
    <dbReference type="OMA" id="NHPYKGV"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016787">
        <property type="term" value="F:hydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007709">
        <property type="entry name" value="N-FG_amidohydro"/>
    </dbReference>
    <dbReference type="Pfam" id="PF05013">
        <property type="entry name" value="FGase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ABX33526.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="310" mass="34262" checksum="B40AD9804C50D06A" modified="2008-01-15" version="1">MHPVLRLISQNFLQSLPGAAGSGAADAAPPMVTSVAGASAVVLDSPHSGTVYPADFGSCLPLATLRQAEDTHVEKIYAFAPGLGVSWVEAHFPRIYLDANRDTTEIDTTMIEGEWPLPVTTDQVVLQKVRLGKGLIWKFTDEGVPIYDRQLPAAELLQRIERCWKPYHTAVERAIDGAHARHGYSIHINCHSMPSVAASHATLHPGLVHADFVIGDRDGSTASPALSERICAFLRKRGYSVDYNHPYKGVELVRRYGKPAEHRHSIQIEINRKLYMNEQTLDLDQAGYLRLTTDLKVLVEQLMATDPRTL</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="71" xmlns="http://uniprot.org/uniprot">
    <accession>A9BQD1</accession>
    <name>A9BQD1_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="3 7">Nuclease SbcCD subunit D</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="7" type="primary">sbcD</name>
        <name evidence="10" type="ordered locus">Daci_0895</name>
    </gene>
    <organism evidence="10 11">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="10 11" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="11">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="11" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="11">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="7">SbcCD cleaves DNA hairpin structures. These structures can inhibit DNA replication and are intermediates in certain DNA recombination reactions. The complex acts as a 3'-&gt;5' double strand exonuclease that can open hairpins. It also has a 5' single-strand endonuclease activity.</text>
    </comment>
    <comment type="subunit">
        <text evidence="2 7">Heterodimer of SbcC and SbcD.</text>
    </comment>
    <comment type="similarity">
        <text evidence="1 7">Belongs to the SbcD family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX33541.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012202827.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_0895"/>
    <dbReference type="PRIDE" id="A9BQD1"/>
    <dbReference type="EnsemblBacteria" id="ABX33541">
        <property type="protein sequence ID" value="ABX33541"/>
        <property type="gene ID" value="Daci_0895"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_0895"/>
    <dbReference type="eggNOG" id="COG0420">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_038045_2_0_4"/>
    <dbReference type="OMA" id="TSGNHDS"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008408">
        <property type="term" value="F:3'-5' exonuclease activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004519">
        <property type="term" value="F:endonuclease activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006310">
        <property type="term" value="P:DNA recombination"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006260">
        <property type="term" value="P:DNA replication"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd00840">
        <property type="entry name" value="MPP_Mre11_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.60.21.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004843">
        <property type="entry name" value="Calcineurin-like_PHP_ApaH"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029052">
        <property type="entry name" value="Metallo-depent_PP-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041796">
        <property type="entry name" value="Mre11_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004593">
        <property type="entry name" value="SbcD"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR026843">
        <property type="entry name" value="SbcD_C"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00149">
        <property type="entry name" value="Metallophos"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12320">
        <property type="entry name" value="SbcD_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56300">
        <property type="entry name" value="SSF56300"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00619">
        <property type="entry name" value="sbcd"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="7" id="KW-0233">DNA recombination</keyword>
    <keyword evidence="7" id="KW-0235">DNA replication</keyword>
    <keyword evidence="7" id="KW-0255">Endonuclease</keyword>
    <keyword evidence="6 7" id="KW-0269">Exonuclease</keyword>
    <keyword evidence="5 7" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="4 7" id="KW-0540">Nuclease</keyword>
    <keyword evidence="11" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Metallophos" evidence="8">
        <location>
            <begin position="1"/>
            <end position="239"/>
        </location>
    </feature>
    <feature type="domain" description="SbcD_C" evidence="9">
        <location>
            <begin position="289"/>
            <end position="388"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00010555"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00011322"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00013365"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022722"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022839"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="RuleBase" id="RU363069"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="Pfam" id="PF00149"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="9">
        <source>
            <dbReference type="Pfam" id="PF12320"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="EMBL" id="ABX33541.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="425" mass="45321" checksum="5EC45DE33505AE21" modified="2008-01-15" version="1">MRLLHTSDWHLGQHFMGKSRQAEHAALIDWLLEQVDAQAVDAVLIAGDIFDTGAPPSYARELYSQLVVRLHAAGVALLLLGGNHDSVATLAENRELLACLDTTVVAAVGETASHVVELPLRRRPGQPAAPGCIVCALPFMRPRDLVLSQPGQSAEQKQQALQAAIESCYRSVHDAAMARRDALAAASGQRLPIIATGHLTTVGASSSESVREIYVGSLDAFPTSAFPPADYVALGHIHQPQKVGGLEHIRYSGSPIALSFDEARQSKQMLLVDLGPEGLQAVTPLPVPCFQPMASVAGSLTALPDLMRAAAQAGSPARSVWLEVVVEQDDYLPQLTDRVQALADELPVELLRVRRQRGRAVAGMAAAAGESLHEISPADVFERRLALETLEPGLAQALTRRYQEVVAGLDAPQPGAGEHGEEARA</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="52" xmlns="http://uniprot.org/uniprot">
    <accession>A9BQG3</accession>
    <name>A9BQG3_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Daci_0927</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="2" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX33573.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012202859.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_0927"/>
    <dbReference type="PRIDE" id="A9BQG3"/>
    <dbReference type="EnsemblBacteria" id="ABX33573">
        <property type="protein sequence ID" value="ABX33573"/>
        <property type="gene ID" value="Daci_0927"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_0927"/>
    <dbReference type="eggNOG" id="COG2931">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_040905_0_0_4"/>
    <dbReference type="OMA" id="YATDFHN"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017549">
        <property type="entry name" value="APMV_L690"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR03118">
        <property type="entry name" value="PEPCTERM_chp_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ABX33573.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="421" mass="44647" checksum="811EA8B0263CA02E" modified="2008-01-15" version="1">MLDRRHFVLSALASSALTACGGGAPANRYLQTPLLASHAGYGARFTEPDFVNGWGIAIRPAGAGGHFWIGGGGTSWQFLGDVSRSSEPSLRTLRQDGLRKVAVPQSDSRIDDGSAGKVTGVVYHGAPLESHLFRVRSQPAGGRLLDGAARFVFVTDSGSVSAWTERDAETGAIVRVDGPAVEVFDGTGRGMAFFGAALHTGRWDRLWLADFGDQPQIRTLDAQWQLTPTQGFVNPFASGPAGVARPGDPVPFNIQVVNDGSRDRVFVLYAMSQPDPEDASAFFAGEEDAMDAEREAATGNRPARGKLAEFDLDGRLQRIYSDDGRLNAPWGVAIAPPDFGPLSGRLLVGNFGGAGRICAFDLDSGSYVDELRDGQDRPVAIPGLWALQFGNGVALGDSNALYFAAGPKDETEGLFGSLRFG</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="51" xmlns="http://uniprot.org/uniprot">
    <accession>A9BQG8</accession>
    <name>A9BQG8_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="3">PAP2 (Acid phosphatase) superfamily protein-like protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Daci_0932</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="4" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX33578.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012202864.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_0932"/>
    <dbReference type="PRIDE" id="A9BQG8"/>
    <dbReference type="EnsemblBacteria" id="ABX33578">
        <property type="protein sequence ID" value="ABX33578"/>
        <property type="gene ID" value="Daci_0932"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_0932"/>
    <dbReference type="eggNOG" id="COG3907">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_070327_2_0_4"/>
    <dbReference type="OMA" id="YVSHWAW"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036938">
        <property type="entry name" value="P_Acid_Pase_2/haloperoxi_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000326">
        <property type="entry name" value="P_Acid_Pase_2/haloperoxidase"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01569">
        <property type="entry name" value="PAP2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48317">
        <property type="entry name" value="SSF48317"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="78"/>
            <end position="94"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="106"/>
            <end position="124"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="185"/>
            <end position="203"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="215"/>
            <end position="233"/>
        </location>
    </feature>
    <feature type="domain" description="acidPPc" evidence="2">
        <location>
            <begin position="107"/>
            <end position="229"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF01569"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ABX33578.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="258" mass="27887" checksum="1E9BBE1B984D9BD9" modified="2008-01-15" version="1">MLPAMPTPEPRDFSAAPAQGPSFKSTLLWTLAALAVVLAWDASALDLAMARWFGDADGFALRSDWFFVNIAHEGARRLAWLVVLGLTLCVWRPVGPLRLLPHGRRVQLVAGILLSLALISLLKYTSATSCPWDLAEFGGVARHVSHWSLGLADGGPGRCFPAGHASAGFAFLAGYFALRRHAPRAAWIWLAVSLAAGLLMGLAQQMRGAHFMSHTLWTGWLCWTAGWLFDLAVTRALRTRDSAPDSLWPAASLPPSAP</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="49" xmlns="http://uniprot.org/uniprot">
    <accession>A9BQI5</accession>
    <name>A9BQI5_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Cupin 2 conserved barrel domain protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_0949</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX33595.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012202881.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_0949"/>
    <dbReference type="PRIDE" id="A9BQI5"/>
    <dbReference type="EnsemblBacteria" id="ABX33595">
        <property type="protein sequence ID" value="ABX33595"/>
        <property type="gene ID" value="Daci_0949"/>
    </dbReference>
    <dbReference type="GeneID" id="60685514"/>
    <dbReference type="KEGG" id="dac:Daci_0949"/>
    <dbReference type="eggNOG" id="COG0662">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_113984_0_0_4"/>
    <dbReference type="OMA" id="KYDWDAL"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.120.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013096">
        <property type="entry name" value="Cupin_2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014710">
        <property type="entry name" value="RmlC-like_jellyroll"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011051">
        <property type="entry name" value="RmlC_Cupin_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07883">
        <property type="entry name" value="Cupin_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51182">
        <property type="entry name" value="SSF51182"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Cupin_2" evidence="1">
        <location>
            <begin position="82"/>
            <end position="151"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF07883"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX33595.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="176" mass="19891" checksum="902196EE0F7685AE" modified="2008-01-15" version="1">MSESAQNTPRTWDQPEGSSFEQWMESRVARFSTRKYDFDALKFQADFDPKYRRGQMRYIGTGGTGVAADSNTIPSENFTFSTMVIPAGNEGPSHLHTDVEEVFFLIRGKLKLVLEKDGQRFETILTDRDVVSVPPGVYREEINIGDEDALMCVMLGAKKPITPTYPPEHPLAKIKR</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="59" xmlns="http://uniprot.org/uniprot">
    <accession>A9BQJ7</accession>
    <name>A9BQJ7_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Peptidoglycan-binding domain 1 protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Daci_0052</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="4" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX32699.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012201992.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_0052"/>
    <dbReference type="PRIDE" id="A9BQJ7"/>
    <dbReference type="EnsemblBacteria" id="ABX32699">
        <property type="protein sequence ID" value="ABX32699"/>
        <property type="gene ID" value="Daci_0052"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_0052"/>
    <dbReference type="eggNOG" id="COG3409">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_069625_0_0_4"/>
    <dbReference type="OMA" id="CFIVVER"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030288">
        <property type="term" value="C:outer membrane-bounded periplasmic space"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.101.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005534">
        <property type="entry name" value="Curli_assmbl/transp-comp_CsgG"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002477">
        <property type="entry name" value="Peptidoglycan-bd-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036365">
        <property type="entry name" value="PGBD-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036366">
        <property type="entry name" value="PGBDSf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03783">
        <property type="entry name" value="CsgG"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01471">
        <property type="entry name" value="PG_binding_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47090">
        <property type="entry name" value="SSF47090"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="PG_binding_1" evidence="2">
        <location>
            <begin position="289"/>
            <end position="341"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="300"/>
            <end position="344"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="307"/>
            <end position="344"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF01471"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ABX32699.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="344" mass="35115" checksum="C38075ABADE866E3" modified="2008-01-15" version="1">MKKYLALTAIAAVALTGCVTTDMRMGSPEAKTVATGAAGGASAENANTELERCDSSLGTISLVENQTAGWYTILTQQYRLPPTSQLLRLMIQQSNCFIVVERGAAGMGAMARERALMDSGEMRGGSNLGKGQMVASDYGLSPEVIFNQSDAGGMGGAIGGRAGGIFGALAAATKTREASVMLALVDNRSGVQVSASEGSSSKTDWGGMGALFGGSAGASLGGYTRTAEGKVIAAAFMDAYNQMVRALRNYKAQTVKGQGLGGGGRLGVDGGAAPSQTSAPGANAAGMSLRAAQQKLNALGYTAGTPDGSMGKNTQNALREFQRDQSLPQTGRLDRATSQALQQQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="77" xmlns="http://uniprot.org/uniprot">
    <accession>A9BQK0</accession>
    <name>A9BQK0_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="8">Oxidoreductase molybdopterin binding</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="8" type="ordered locus">Daci_0055</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="9" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>Mo-molybdopterin</name>
            <dbReference type="ChEBI" id="CHEBI:71302"/>
        </cofactor>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX32702.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012201995.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_0055"/>
    <dbReference type="PRIDE" id="A9BQK0"/>
    <dbReference type="EnsemblBacteria" id="ABX32702">
        <property type="protein sequence ID" value="ABX32702"/>
        <property type="gene ID" value="Daci_0055"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_0055"/>
    <dbReference type="eggNOG" id="COG2041">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_003827_5_5_4"/>
    <dbReference type="OMA" id="EPIPLAH"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030151">
        <property type="term" value="F:molybdenum ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016491">
        <property type="term" value="F:oxidoreductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.420.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014756">
        <property type="entry name" value="Ig_E-set"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005066">
        <property type="entry name" value="MoCF_OxRdtse_dimer"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008335">
        <property type="entry name" value="Mopterin_OxRdtase_euk"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000572">
        <property type="entry name" value="OxRdtase_Mopterin-bd_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036374">
        <property type="entry name" value="OxRdtase_Mopterin-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006311">
        <property type="entry name" value="TAT_signal"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03404">
        <property type="entry name" value="Mo-co_dimer"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00174">
        <property type="entry name" value="Oxidored_molyb"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00407">
        <property type="entry name" value="EUMOPTERIN"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56524">
        <property type="entry name" value="SSF56524"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF81296">
        <property type="entry name" value="SSF81296"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51318">
        <property type="entry name" value="TAT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0500">Molybdenum</keyword>
    <keyword evidence="3" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="5" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="5">
        <location>
            <begin position="1"/>
            <end position="38"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5002735690" evidence="5">
        <location>
            <begin position="39"/>
            <end position="417"/>
        </location>
    </feature>
    <feature type="domain" description="Oxidored_molyb" evidence="6">
        <location>
            <begin position="112"/>
            <end position="276"/>
        </location>
    </feature>
    <feature type="domain" description="Mo-co_dimer" evidence="7">
        <location>
            <begin position="297"/>
            <end position="412"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="4">
        <location>
            <begin position="384"/>
            <end position="405"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001924"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022505"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023002"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="Pfam" id="PF00174"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="Pfam" id="PF03404"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="ABX32702.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="417" mass="43539" checksum="A22A790AB292F448" modified="2008-01-15" version="1">MNHLPTSPTSPARRSLLAGSASALAAAGLAGLHQGALAQAQAQAQAPAAAAAPVAKPLPGYAGWKKADALIVHSSTTIETRRGAFGTSVITPSDQLYVRNNLPTPPESIVADRDAWQLQVEGVRQPRSLSLRELKSLGLETVAMVLQCSGNGRAFFPSKPSGTAWTVGAAGCVIWSGVPVREVVKALGGVSDGGLYMTGTGGEVLPAGLDPKSVIVERSVPLSAMEDALLAWEMNGEPIPLAHGGPLRLIVPGYTGVNNIKYIKQLAFTPRESEAHIMSHGYRISPPGSKGDPSQPSVQEMSVKSWINSPLPEDGGQAAGLVQIHGVAFGGMDAVKGVEVSTDGGKSWQAARLVGPDLGKYAWRQFVLQARLPKGTHVLASRATDARGRVQPETRGENQSGYNNTSWADHAVTVTVA</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="64" xmlns="http://uniprot.org/uniprot">
    <accession>A9BQQ1</accession>
    <name>A9BQQ1_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">4-hydroxyphenylacetate degradation bifunctional isomerase/decarboxylase,HpaG2 subunit</fullName>
            <ecNumber evidence="2">4.1.1.68</ecNumber>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_0107</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EC" id="4.1.1.68" evidence="2"/>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX32753.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012202046.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="SMR" id="A9BQQ1"/>
    <dbReference type="STRING" id="398578.Daci_0107"/>
    <dbReference type="PRIDE" id="A9BQQ1"/>
    <dbReference type="EnsemblBacteria" id="ABX32753">
        <property type="protein sequence ID" value="ABX32753"/>
        <property type="gene ID" value="Daci_0107"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_0107"/>
    <dbReference type="eggNOG" id="COG0179">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_028458_4_2_4"/>
    <dbReference type="OMA" id="MKHARIR"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008704">
        <property type="term" value="F:5-carboxymethyl-2-hydroxymuconate delta-isomerase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0018800">
        <property type="term" value="F:5-oxopent-3-ene-1,2,5-tricarboxylate decarboxylase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:1901023">
        <property type="term" value="P:4-hydroxyphenylacetate catabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.850.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011234">
        <property type="entry name" value="Fumarylacetoacetase-like_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036663">
        <property type="entry name" value="Fumarylacetoacetase_C_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012684">
        <property type="entry name" value="HPA_isomer/decarb_C"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01557">
        <property type="entry name" value="FAA_hydrolase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56529">
        <property type="entry name" value="SSF56529"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR02303">
        <property type="entry name" value="HpaG-C-term"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0413">Isomerase</keyword>
    <keyword evidence="2" id="KW-0456">Lyase</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="FAA_hydrolase" evidence="1">
        <location>
            <begin position="47"/>
            <end position="245"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF01557"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX32753.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="253" mass="27748" checksum="9C3E40F6952E0E3C" modified="2008-01-15" version="1">MKHGRVIFEGQTLQVTEGPHGQVQLPDGRLVAETAVQWLPPLQFGTVFALGLNYADHAKEIAFNKAPEEPLVFLKGPNTLNGHHGRTYRPADVAYMHFECELGVVIGKTCRNVRREDAYSVIAGYCTANDYAIRDYLENFYRPNLRVKNRDGATPVGPWFVDAADVPDPMNLRLRSWVNGELKQDGSTRDMVHDIPSLIAHLSGFMTLNPGDLILTGTPDGVADSRVGDEIVTEIEGLGRLVNTIVGDAPAAS</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="79" xmlns="http://uniprot.org/uniprot">
    <accession>A9BQQ6</accession>
    <name>A9BQQ6_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Transcriptional regulator, LysR family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Daci_0112</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="4" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the LysR transcriptional regulatory family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX32758.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012202051.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_0112"/>
    <dbReference type="PRIDE" id="A9BQQ6"/>
    <dbReference type="EnsemblBacteria" id="ABX32758">
        <property type="protein sequence ID" value="ABX32758"/>
        <property type="gene ID" value="Daci_0112"/>
    </dbReference>
    <dbReference type="GeneID" id="60690519"/>
    <dbReference type="KEGG" id="dac:Daci_0112"/>
    <dbReference type="eggNOG" id="COG0583">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_039613_39_0_4"/>
    <dbReference type="OMA" id="CVMRQGH"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003700">
        <property type="term" value="F:DNA-binding transcription factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd08417">
        <property type="entry name" value="PBP2_Nitroaromatics_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005119">
        <property type="entry name" value="LysR_subst-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000847">
        <property type="entry name" value="Tscrpt_reg_HTH_LysR"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036390">
        <property type="entry name" value="WH_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037402">
        <property type="entry name" value="YidZ_PBP2"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00126">
        <property type="entry name" value="HTH_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03466">
        <property type="entry name" value="LysR_substrate"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00039">
        <property type="entry name" value="HTHLYSR"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46785">
        <property type="entry name" value="SSF46785"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50931">
        <property type="entry name" value="HTH_LYSR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HTH lysR-type" evidence="2">
        <location>
            <begin position="9"/>
            <end position="66"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00009437"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS50931"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ABX32758.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="319" mass="35245" checksum="01D7AC348E12DB15" modified="2008-01-15" version="1">MSALNFRTLDLNLLRVFDEVMAERSLTRAAHKLAITQPAVSNALRRLREALGDELLVRQGQGVEPTPRALALWPVIREALQQLQDTLTPGEFHPSTATATFVLAMADATAATLIPPMFSLLEREAPGVGIRVLPLTTRDPRGLLEAGEADMAVGYFPAALADLTARAQSGALVAFDSRRLYEGEYLCVMRQGHPLADVPLTLDNYCAARHMLVSFSGRSFGFIDEALASLGRTRQVVLTVNQFFTAGRVVMNSNLLTILPRHFVPVTGMADKLVLRELPFDVQPVHVDALWRRRGQHPQAYDWLLRTLTRSAEATFPHT</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="57" xmlns="http://uniprot.org/uniprot">
    <accession>A9BQU7</accession>
    <name>A9BQU7_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Galactarate dehydratase</fullName>
            <ecNumber evidence="4">4.2.1.42</ecNumber>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ordered locus">Daci_0256</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="5" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the UxaA family.</text>
    </comment>
    <dbReference type="EC" id="4.2.1.42" evidence="4"/>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX32902.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012202195.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_0256"/>
    <dbReference type="PRIDE" id="A9BQU7"/>
    <dbReference type="EnsemblBacteria" id="ABX32902">
        <property type="protein sequence ID" value="ABX32902"/>
        <property type="gene ID" value="Daci_0256"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_0256"/>
    <dbReference type="eggNOG" id="COG2721">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_029189_0_0_4"/>
    <dbReference type="OMA" id="DVGWELF"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008867">
        <property type="term" value="F:galactarate dehydratase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046392">
        <property type="term" value="P:galactarate catabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd11613">
        <property type="entry name" value="SAF_AH_GD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007392">
        <property type="entry name" value="Gal/Altron_deHydtase_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017654">
        <property type="entry name" value="GarD-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013974">
        <property type="entry name" value="SAF"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR044144">
        <property type="entry name" value="UxaA/GarD_SAF"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04295">
        <property type="entry name" value="GD_AH_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08666">
        <property type="entry name" value="SAF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00858">
        <property type="entry name" value="SAF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR03248">
        <property type="entry name" value="galactar-dH20"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2 4" id="KW-0456">Lyase</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="SAF" evidence="3">
        <location>
            <begin position="15"/>
            <end position="85"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00010986"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023239"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="SMART" id="SM00858"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="ABX32902.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="521" mass="55410" checksum="AD475DDBEAF5C590" modified="2008-01-15" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-05-25" version="56" xmlns="http://uniprot.org/uniprot">
    <accession>A9BRL4</accession>
    <name>A9BRL4_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="5">TRAP dicarboxylate transporter, DctM subunit</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ordered locus">Daci_0729</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="6" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="2">Cell inner membrane</location>
            <topology evidence="2">Multi-pass membrane protein</topology>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX33375.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012202661.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_0729"/>
    <dbReference type="EnsemblBacteria" id="ABX33375">
        <property type="protein sequence ID" value="ABX33375"/>
        <property type="gene ID" value="Daci_0729"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_0729"/>
    <dbReference type="eggNOG" id="COG1593">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_019824_4_1_4"/>
    <dbReference type="OMA" id="PIGLCLC"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010656">
        <property type="entry name" value="DctM"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004681">
        <property type="entry name" value="TRAP_DctM"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33362">
        <property type="entry name" value="PTHR33362"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF06808">
        <property type="entry name" value="DctM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF006066">
        <property type="entry name" value="HI0050"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00786">
        <property type="entry name" value="dctM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-0472">Membrane</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="3" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="3">
        <location>
            <begin position="50"/>
            <end position="69"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="3">
        <location>
            <begin position="134"/>
            <end position="160"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="3">
        <location>
            <begin position="166"/>
            <end position="192"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="3">
        <location>
            <begin position="213"/>
            <end position="234"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="3">
        <location>
            <begin position="240"/>
            <end position="256"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="3">
        <location>
            <begin position="268"/>
            <end position="292"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="3">
        <location>
            <begin position="312"/>
            <end position="345"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="3">
        <location>
            <begin position="357"/>
            <end position="385"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="3">
        <location>
            <begin position="397"/>
            <end position="418"/>
        </location>
    </feature>
    <feature type="domain" description="DctM" evidence="4">
        <location>
            <begin position="3"/>
            <end position="415"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00004429"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="Pfam" id="PF06808"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="ABX33375.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="419" mass="44381" checksum="470C3B099C5236A0" modified="2008-01-15" version="1">MSFIMLFVFMAGAVIAMPIAHALLMGAMAAAATSDRVPLDLLVQQMVAQVQSFPLIAIPFFMLTGSLMMGGRLGEALVGVLSALIGRFHGGPAQVGVMSSTLFGGVSGSAVADASAIGSLMIPWHRRLGYPPAFSAATLAAAATIDILIPPSIPMILFALSANASIAALFVAGIVPGLLMCAGFMGVCWWVGRSRGFPRDTTPFAWPAFRRHLLYASPALLLPVLIIVFLRFGIATPTEVAVLSTLYAGLVSAAIYRDLGWRRLNDAVVHAGLATGVVLLVIMASSAIGWLLTFDRMPDGVVHWVQSHVHSAWLVIVLMNLLMLFIGMFIDLPAAVLLLTPVFVPLAQSIGMDMTQLGIMMVVNLALGLYTPPVGTTLFITSSLARVKVGQTVRELIPFYLVALAVLALVSYVPASILR</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="90" xmlns="http://uniprot.org/uniprot">
    <accession>A9BRZ0</accession>
    <name>A9BRZ0_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="6">Acetate kinase</fullName>
            <ecNumber evidence="6">2.7.2.1</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="6">Acetokinase</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="6" type="primary">ackA</name>
        <name evidence="8" type="ordered locus">Daci_0754</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="9" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="6">Catalyzes the formation of acetyl phosphate from acetate and ATP. Can also catalyze the reverse reaction.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="6">
            <text>acetate + ATP = acetyl phosphate + ADP</text>
            <dbReference type="Rhea" id="RHEA:11352"/>
            <dbReference type="ChEBI" id="CHEBI:22191"/>
            <dbReference type="ChEBI" id="CHEBI:30089"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:456216"/>
            <dbReference type="EC" id="2.7.2.1"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="6">
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </cofactor>
        <cofactor evidence="6">
            <name>Mn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29035"/>
        </cofactor>
        <text evidence="6">Mg(2+). Can also accept Mn(2+).</text>
    </comment>
    <comment type="pathway">
        <text evidence="6">Metabolic intermediate biosynthesis; acetyl-CoA biosynthesis; acetyl-CoA from acetate: step 1/2.</text>
    </comment>
    <comment type="subunit">
        <text evidence="6">Homodimer.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="6">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="1 6 7">Belongs to the acetokinase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="6">Lacks conserved residue(s) required for the propagation of feature annotation.</text>
    </comment>
    <dbReference type="EC" id="2.7.2.1" evidence="6"/>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX33400.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012202686.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_0754"/>
    <dbReference type="PRIDE" id="A9BRZ0"/>
    <dbReference type="EnsemblBacteria" id="ABX33400">
        <property type="protein sequence ID" value="ABX33400"/>
        <property type="gene ID" value="Daci_0754"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_0754"/>
    <dbReference type="eggNOG" id="COG0282">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_020352_0_0_4"/>
    <dbReference type="OMA" id="PLPWRYY"/>
    <dbReference type="UniPathway" id="UPA00340">
        <property type="reaction ID" value="UER00458"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008776">
        <property type="term" value="F:acetate kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000287">
        <property type="term" value="F:magnesium ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006085">
        <property type="term" value="P:acetyl-CoA biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniPathway"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006082">
        <property type="term" value="P:organic acid metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016310">
        <property type="term" value="P:phosphorylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00020">
        <property type="entry name" value="Acetate_kinase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004372">
        <property type="entry name" value="Ac/propionate_kinase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000890">
        <property type="entry name" value="Aliphatic_acid_kin_short-chain"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023865">
        <property type="entry name" value="Aliphatic_acid_kinase_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043129">
        <property type="entry name" value="ATPase_NBD"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR21060">
        <property type="entry name" value="PTHR21060"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00871">
        <property type="entry name" value="Acetate_kinase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF000722">
        <property type="entry name" value="Acetate_prop_kin"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00471">
        <property type="entry name" value="ACETATEKNASE"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53067">
        <property type="entry name" value="SSF53067"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00016">
        <property type="entry name" value="ackA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01075">
        <property type="entry name" value="ACETATE_KINASE_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5 6" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="6" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="4 6 7" id="KW-0418">Kinase</keyword>
    <keyword evidence="6" id="KW-0460">Magnesium</keyword>
    <keyword evidence="6" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="3 6" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 6 7" id="KW-0808">Transferase</keyword>
    <feature type="active site" description="Proton donor/acceptor" evidence="6">
        <location>
            <position position="161"/>
        </location>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <position position="19"/>
        </location>
        <ligand>
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <position position="26"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <position position="104"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <begin position="219"/>
            <end position="223"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <begin position="345"/>
            <end position="349"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <position position="396"/>
        </location>
        <ligand>
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </ligand>
    </feature>
    <feature type="site" description="Transition state stabilizer" evidence="6">
        <location>
            <position position="192"/>
        </location>
    </feature>
    <feature type="site" description="Transition state stabilizer" evidence="6">
        <location>
            <position position="252"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00008748"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022777"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00020"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="RuleBase" id="RU003835"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="ABX33400.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="410" mass="43824" checksum="312F1BE0A91FE2B8" modified="2008-01-15" version="1">MIPAHTASSPARELVVVLNCGSSSIKFAVFDGAQRPLPRKPLWNGKVQGIGGPAPDFGESGVPPFAIALDAAHPYRAALQLIRERITARLAQLDGARVAAVAHRVVHGGSRYFEPVRVDAGVLADLKAFIPLAPLHQPFALEAMDILLRERPELVQVACFDTAFHHTLPKVEQLLPLPHAAWERGLRRYGFHGLSYEYMATALPERHGDLARGRTLVAHLGSGASLCAMQGLQSVATTMGFSALDGLMMGTRTGALDPGAVIYLMEIEKLSLQEVGRILYHESGLLGVSGTSSEPRVLLPLESGADAQAERARDALALYVRRIVREIGALVAVLGGLDLLVFTAGVGEHSAEIRRRVCEGLGFLGLRLDAEANARDAAVISATGSAVTVGVEPTNEEWVAARHALRWLPG</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="49" xmlns="http://uniprot.org/uniprot">
    <accession>A9BS07</accession>
    <name>A9BS07_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Putative outer membrane protein B</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_0771</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX33417.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_0771"/>
    <dbReference type="PRIDE" id="A9BS07"/>
    <dbReference type="EnsemblBacteria" id="ABX33417">
        <property type="protein sequence ID" value="ABX33417"/>
        <property type="gene ID" value="Daci_0771"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_0771"/>
    <dbReference type="eggNOG" id="ENOG5031K11">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_078202_0_0_4"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.160.20.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012334">
        <property type="entry name" value="Pectin_lyas_fold"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011050">
        <property type="entry name" value="Pectin_lyase_fold/virulence"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51126">
        <property type="entry name" value="SSF51126"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="1">
        <location>
            <begin position="1"/>
            <end position="33"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5002733030" evidence="1">
        <location>
            <begin position="34"/>
            <end position="248"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX33417.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="248" mass="25092" checksum="755FA2FC17EB1560" modified="2008-01-15" version="1">MSFMPRAPFPSSRGWAALIVCASAALASSGAWAQATRTWVSGVGDDVNPCSRTAPCKTFAGAISKTAAKGEINVLDPGGFGAITITKSITIDGSGGAIAGVLVSGTNGITVSANPSDTVVLRSLDINGVDQGLSGVNILQAGKVVVENVKIQGFAQAAVRVDAAATNTSVLVQGSQLLGNVQPVQGDAARAAISVQSTTAQVYLSNTTVFGNDKAFNAVAGGKITSFNNNRVMGNTQDSAPTDTVYER</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="81" xmlns="http://uniprot.org/uniprot">
    <accession>A9BSH0</accession>
    <name>A9BSH0_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="8">ABC transporter related</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="8" type="ordered locus">Daci_1139</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="9" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX33784.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012203070.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_1139"/>
    <dbReference type="PRIDE" id="A9BSH0"/>
    <dbReference type="EnsemblBacteria" id="ABX33784">
        <property type="protein sequence ID" value="ABX33784"/>
        <property type="gene ID" value="Daci_1139"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_1139"/>
    <dbReference type="eggNOG" id="COG1116">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_000604_1_22_4"/>
    <dbReference type="OMA" id="FVYQSHR"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003593">
        <property type="entry name" value="AAA+_ATPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003439">
        <property type="entry name" value="ABC_transporter-like_ATP-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017871">
        <property type="entry name" value="ABC_transporter-like_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00005">
        <property type="entry name" value="ABC_tran"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00382">
        <property type="entry name" value="AAA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00211">
        <property type="entry name" value="ABC_TRANSPORTER_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50893">
        <property type="entry name" value="ABC_TRANSPORTER_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3 6" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="1" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="5" id="KW-0472">Membrane</keyword>
    <keyword evidence="2 6" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4" id="KW-1278">Translocase</keyword>
    <feature type="domain" description="ABC transporter" evidence="7">
        <location>
            <begin position="15"/>
            <end position="255"/>
        </location>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <begin position="53"/>
            <end position="60"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022967"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00434"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="PROSITE" id="PS50893"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="ABX33784.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="280" mass="31921" checksum="6349CCA728CA68BC" modified="2008-01-15" version="1">MNSSTSHGDDDAFFVEFRDVWLAYNEELLRANHFAVEAIDLQVRRGEFIAIVGPSGCGKSTFMKLTTGLKMPSMGRVMVNGERVTGPLKISGMAFQAPSLLPWRTTVDNVLLPLEIVEPHRSLFRQKRKEYEARARALLQKVGLGGYEDKYPWQLSGGMQQRASICRALIHEPQMLLLDEPFGALDAFTREELWCVLRDLQAEQRFNVILVTHDLRESVFLADTVYVMSKSPGRFVVRRDIELPRPRELELTYTREFTDIVHELRGHIGAMRKTGAAIQQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="61" xmlns="http://uniprot.org/uniprot">
    <accession>A9BSZ4</accession>
    <name>A9BSZ4_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="8">Sulfatase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="8" type="ordered locus">Daci_1711</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="9" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX34354.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_1711"/>
    <dbReference type="PRIDE" id="A9BSZ4"/>
    <dbReference type="EnsemblBacteria" id="ABX34354">
        <property type="protein sequence ID" value="ABX34354"/>
        <property type="gene ID" value="Daci_1711"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_1711"/>
    <dbReference type="eggNOG" id="COG2194">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_018534_3_3_4"/>
    <dbReference type="OMA" id="AYASKPW"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008484">
        <property type="term" value="F:sulfuric ester hydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016772">
        <property type="term" value="F:transferase activity, transferring phosphorus-containing groups"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.720.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017850">
        <property type="entry name" value="Alkaline_phosphatase_core_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR040423">
        <property type="entry name" value="PEA_transferase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000917">
        <property type="entry name" value="Sulfatase_N"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30443">
        <property type="entry name" value="PTHR30443"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00884">
        <property type="entry name" value="Sulfatase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53649">
        <property type="entry name" value="SSF53649"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="5 6" id="KW-0472">Membrane</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 6" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="4 6" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="21"/>
            <end position="37"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="43"/>
            <end position="61"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="73"/>
            <end position="91"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="120"/>
            <end position="146"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="158"/>
            <end position="175"/>
        </location>
    </feature>
    <feature type="domain" description="Sulfatase" evidence="7">
        <location>
            <begin position="230"/>
            <end position="490"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="Pfam" id="PF00884"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="ABX34354.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="551" mass="62544" checksum="3403A3A0A30B3541" modified="2008-01-15" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="83" xmlns="http://uniprot.org/uniprot">
    <accession>A9BT91</accession>
    <name>A9BT91_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Transcriptional regulator, LysR family</fullName>
            <ecNumber evidence="3">4.2.1.1</ecNumber>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Daci_2016</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="4" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the LysR transcriptional regulatory family.</text>
    </comment>
    <dbReference type="EC" id="4.2.1.1" evidence="3"/>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX34656.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_2016"/>
    <dbReference type="PRIDE" id="A9BT91"/>
    <dbReference type="EnsemblBacteria" id="ABX34656">
        <property type="protein sequence ID" value="ABX34656"/>
        <property type="gene ID" value="Daci_2016"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_2016"/>
    <dbReference type="eggNOG" id="COG0583">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_039613_16_1_4"/>
    <dbReference type="OMA" id="GQRLYEV"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004089">
        <property type="term" value="F:carbonate dehydratase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003700">
        <property type="term" value="F:DNA-binding transcription factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005119">
        <property type="entry name" value="LysR_subst-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000847">
        <property type="entry name" value="Tscrpt_reg_HTH_LysR"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036390">
        <property type="entry name" value="WH_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00126">
        <property type="entry name" value="HTH_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03466">
        <property type="entry name" value="LysR_substrate"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46785">
        <property type="entry name" value="SSF46785"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50931">
        <property type="entry name" value="HTH_LYSR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-0456">Lyase</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HTH lysR-type" evidence="2">
        <location>
            <begin position="6"/>
            <end position="63"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00009437"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS50931"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ABX34656.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="297" mass="32674" checksum="3A09492F10B03BCA" modified="2008-01-15" version="1">MAIDMDSFSGLESFVRAADLLSFAEAGRALGISASAVGKNVARLEQQLGLRLFQRTTRQVRLTQEGALFHERCRRILDELHDARATMQAAAEAPRGRLRVSLPTIGYRFLLPVLPEFQVLYPEVDLDLDFNDHLVDVVEAGLDVVIRSGELADSRLVARRLGPFRFILAGSPDYLAARGIPQSPAELAQHSCLRYRFLSSGKLEEWVLPGMPPHLPAALVCNNMEAMLGAAVAGMGLAYMPDFLARDALGRGELQRVLAEDLTHTGQFSALWASSRQLSPKVRAFVDFVGGRLFKES</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="63" xmlns="http://uniprot.org/uniprot">
    <accession>A9BTJ8</accession>
    <name>A9BTJ8_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">UPF0229 protein Daci_2328</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Daci_2328</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="4" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the UPF0229 family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX34966.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012204248.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_2328"/>
    <dbReference type="PRIDE" id="A9BTJ8"/>
    <dbReference type="EnsemblBacteria" id="ABX34966">
        <property type="protein sequence ID" value="ABX34966"/>
        <property type="gene ID" value="Daci_2328"/>
    </dbReference>
    <dbReference type="GeneID" id="60686704"/>
    <dbReference type="KEGG" id="dac:Daci_2328"/>
    <dbReference type="eggNOG" id="COG2718">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_049702_0_0_4"/>
    <dbReference type="OMA" id="QYFAYIE"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01232">
        <property type="entry name" value="UPF0229"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006698">
        <property type="entry name" value="UPF0229"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30510">
        <property type="entry name" value="PTHR30510"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04285">
        <property type="entry name" value="DUF444"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="67"/>
            <end position="112"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01232"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ABX34966.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="422" mass="47829" checksum="0EAB752404465EB6" modified="2008-01-15" version="1">MALQIIDRRLAGKNKSVGNRERFVRRYKAQIAEAVRRAVDKRGIRHMEESESVSIPRKDIREPVFHHGQGGVHDTVHPGNTEHVRGDRIARPQGGAGGGGSQASDSGEGEDDFTFTLTKEEFMELFFEDLALPRLLRTHIGNTMQYKTRRAGYSHDGTPHNLALLRTMRGALGRRIALTKAPHRELKALEEQLQALLAQDDGTSEAAAELQQRIDALKLRMGTVAFLDPIDLRFRNRTRVPAPISQAVMFCVMDVSGSMDQDRKDLAKRFFILLYLFLTRHYEKIDIVFIRHHTQAAEVSEDEFFHSQESGGTVVSSALVLLDQIIRARYPSGDWNIYVAQASDGDNFGDDGSNCRNLLVEKILPLVRYFAYVQVVQEEQSLWQEYSQVLPLFSHFAMRKVSDASEIYPVFRDLFKKEGVSV</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="90" xmlns="http://uniprot.org/uniprot">
    <accession>A9BTM6</accession>
    <name>A9BTM6_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="12">Glutathione-disulfide reductase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="12" type="ordered locus">Daci_2356</name>
    </gene>
    <organism evidence="12 13">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="12 13" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="13">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="13" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="13">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="7">
            <name>FAD</name>
            <dbReference type="ChEBI" id="CHEBI:57692"/>
        </cofactor>
        <text evidence="7">Binds 1 FAD per subunit.</text>
    </comment>
    <comment type="similarity">
        <text evidence="1 9">Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX34994.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_2356"/>
    <dbReference type="PRIDE" id="A9BTM6"/>
    <dbReference type="EnsemblBacteria" id="ABX34994">
        <property type="protein sequence ID" value="ABX34994"/>
        <property type="gene ID" value="Daci_2356"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_2356"/>
    <dbReference type="eggNOG" id="COG1249">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_016755_2_2_4"/>
    <dbReference type="OMA" id="CFDYVKP"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0050660">
        <property type="term" value="F:flavin adenine dinucleotide binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004362">
        <property type="term" value="F:glutathione-disulfide reductase (NADPH) activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0050661">
        <property type="term" value="F:NADP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0045454">
        <property type="term" value="P:cell redox homeostasis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006749">
        <property type="term" value="P:glutathione metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.390.30">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.50.50.60">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036188">
        <property type="entry name" value="FAD/NAD-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023753">
        <property type="entry name" value="FAD/NAD-binding_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016156">
        <property type="entry name" value="FAD/NAD-linked_Rdtase_dimer_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006322">
        <property type="entry name" value="Glutathione_Rdtase_euk/bac"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001100">
        <property type="entry name" value="Pyr_nuc-diS_OxRdtase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004099">
        <property type="entry name" value="Pyr_nucl-diS_OxRdtase_dimer"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012999">
        <property type="entry name" value="Pyr_OxRdtase_I_AS"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR42737">
        <property type="entry name" value="PTHR42737"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07992">
        <property type="entry name" value="Pyr_redox_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02852">
        <property type="entry name" value="Pyr_redox_dim"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF000350">
        <property type="entry name" value="Mercury_reductase_MerA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51905">
        <property type="entry name" value="SSF51905"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55424">
        <property type="entry name" value="SSF55424"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01421">
        <property type="entry name" value="gluta_reduc_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00076">
        <property type="entry name" value="PYRIDINE_REDOX_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3 7 9" id="KW-0274">FAD</keyword>
    <keyword evidence="2 9" id="KW-0285">Flavoprotein</keyword>
    <keyword evidence="7" id="KW-0520">NAD</keyword>
    <keyword evidence="7" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="4 9" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="5 9" id="KW-0676">Redox-active center</keyword>
    <keyword evidence="13" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Pyr_redox_2" evidence="11">
        <location>
            <begin position="20"/>
            <end position="333"/>
        </location>
    </feature>
    <feature type="domain" description="Pyr_redox_dim" evidence="10">
        <location>
            <begin position="354"/>
            <end position="464"/>
        </location>
    </feature>
    <feature type="active site" description="Proton acceptor" evidence="6">
        <location>
            <position position="454"/>
        </location>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <position position="66"/>
        </location>
        <ligand>
            <name>FAD</name>
            <dbReference type="ChEBI" id="CHEBI:57692"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <position position="130"/>
        </location>
        <ligand>
            <name>FAD</name>
            <dbReference type="ChEBI" id="CHEBI:57692"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <begin position="189"/>
            <end position="196"/>
        </location>
        <ligand>
            <name>NAD(+)</name>
            <dbReference type="ChEBI" id="CHEBI:57540"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <position position="277"/>
        </location>
        <ligand>
            <name>NAD(+)</name>
            <dbReference type="ChEBI" id="CHEBI:57540"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <position position="318"/>
        </location>
        <ligand>
            <name>FAD</name>
            <dbReference type="ChEBI" id="CHEBI:57692"/>
        </ligand>
    </feature>
    <feature type="disulfide bond" description="Redox-active" evidence="8">
        <location>
            <begin position="57"/>
            <end position="62"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00007532"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022630"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022827"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023002"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023284"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="PIRSR" id="PIRSR000350-2"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="PIRSR" id="PIRSR000350-3"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="PIRSR" id="PIRSR000350-4"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="RuleBase" id="RU003691"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="10">
        <source>
            <dbReference type="Pfam" id="PF02852"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="11">
        <source>
            <dbReference type="Pfam" id="PF07992"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="EMBL" id="ABX34994.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="13">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="465" mass="49890" checksum="70092D63AF4B58F5" modified="2008-01-15" version="1">MAGCGIRAAQTQHGISMKHYDYIVIGGGSGGIASANRAAMHGRHCALIEAGEIGGTCVNVGCVPKKVMWHAAQIGEAMHRYGPDYGWDATVNRLDWQRLLDSRSAYIDRIHASYESGLARNKVELIQGFGRFVDARTVEVGGQRLSADHILIATGTRPARPDIPGAELGIDSDGFFALKALPARTAVVGAGYIAVEIAGLLHALGSQTHLFLRQNSALRGFDPLLSQTLMEIMEAEGPAVHRQATPKAVVRNADGSLDLQLQDGSSHTVDCVVWAVGRRPDTSGLNLEAAGVALQDSGHIAVDRFQDTNVPGIHAVGDITGRIELTPVAVAAGRRLSERLFNGKTGEHLDYDNVPTVVFSHPPIGTVGLTEPQARERFGDDQVKVYQSAFTAMYTAVTRHRQPARMKLVCVGPEERIVGIHGIGLGMDEMLQGFAVALKMGATKRDFDDTVAIHPTAAEEFVTMR</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="70" xmlns="http://uniprot.org/uniprot">
    <accession>A9BTN4</accession>
    <name>A9BTN4_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="1">HI0933 family protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Daci_2364</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="2" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX35002.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012204284.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_2364"/>
    <dbReference type="PRIDE" id="A9BTN4"/>
    <dbReference type="EnsemblBacteria" id="ABX35002">
        <property type="protein sequence ID" value="ABX35002"/>
        <property type="gene ID" value="Daci_2364"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_2364"/>
    <dbReference type="eggNOG" id="COG2081">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_025174_2_0_4"/>
    <dbReference type="OMA" id="RCNFTNM"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.8.260">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.50.50.60">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004792">
        <property type="entry name" value="BaiN-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036188">
        <property type="entry name" value="FAD/NAD-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023166">
        <property type="entry name" value="HI0933-like_dom_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR42887">
        <property type="entry name" value="PTHR42887"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51905">
        <property type="entry name" value="SSF51905"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00275">
        <property type="entry name" value="TIGR00275"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ABX35002.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="406" mass="44058" checksum="D72BD684360976D2" modified="2008-01-15" version="1">MTSSLSFDAIVIGAGAAGLFCAAQAGQRGLSVLLLDHAEKVAEKIRISGGGRCNFTNRDLDVRAPHKHFVGGNPQFCRSALSRYTPADFIALMDRHGIAHHEKHKGQLFADRSAEDIIAMLLAECQAGGVQRWQPCKVDSVAHADGQYRLQTSRGAVQAPSLVIATGGLSIPKIGATDFGYRLAQQFDLPLVERTPGLVPLTFDGEAWTPYAQLAGLALPVEISTGSKKERMAFMEDLLFTHRGLSGPAVLQISSYWKPGTPLCINLAPEVDLQDELLKAKSRSRKLIANELAQWLPSRLADAWVQQDAAWQRPIAEASDKALNQLAERLSRWEIVPTGTEGYKKAEVTLGGVDTRALSQQTMECKTQPGLYCIGEVVDITGWLGGYNFQWAWASGYACAQALPCA</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2021-06-02" version="45" xmlns="http://uniprot.org/uniprot">
    <accession>A9BTR3</accession>
    <name>A9BTR3_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Daci_2689</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="2" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX35327.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_003056116.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_2689"/>
    <dbReference type="EnsemblBacteria" id="ABX35327">
        <property type="protein sequence ID" value="ABX35327"/>
        <property type="gene ID" value="Daci_2689"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_2689"/>
    <dbReference type="eggNOG" id="COG5639">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_179036_1_0_4"/>
    <dbReference type="OMA" id="MTLIPHM"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018733">
        <property type="entry name" value="DUF2274"/>
    </dbReference>
    <dbReference type="Pfam" id="PF10038">
        <property type="entry name" value="DUF2274"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ABX35327.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="91" mass="9810" checksum="56C2A7CA36BE1062" modified="2008-01-15" version="1">MNTTRKLRLGPLPKVESVKLAFACPVSLKADLDRYAALHAQVYGEAVDATTLIPHMLEAFMQGDRGFQRNSASKHALQNAGGVTISGCRTP</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="80" xmlns="http://uniprot.org/uniprot">
    <accession>A9BUB7</accession>
    <name>A9BUB7_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="6">Chaperone protein HtpG</fullName>
        </recommendedName>
        <alternativeName>
            <fullName evidence="6">Heat shock protein HtpG</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="6">High temperature protein G</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="6" type="primary">htpG</name>
        <name evidence="8" type="ordered locus">Daci_1175</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="9" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="6">Molecular chaperone. Has ATPase activity.</text>
    </comment>
    <comment type="subunit">
        <text evidence="6">Homodimer.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="6">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="1 6">Belongs to the heat shock protein 90 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="6">Lacks conserved residue(s) required for the propagation of feature annotation.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX33820.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012203106.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_1175"/>
    <dbReference type="PRIDE" id="A9BUB7"/>
    <dbReference type="EnsemblBacteria" id="ABX33820">
        <property type="protein sequence ID" value="ABX33820"/>
        <property type="gene ID" value="Daci_1175"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_1175"/>
    <dbReference type="eggNOG" id="COG0326">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_006684_3_0_4"/>
    <dbReference type="OMA" id="MRRMKEM"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016887">
        <property type="term" value="F:ATP hydrolysis activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051082">
        <property type="term" value="F:unfolded protein binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006457">
        <property type="term" value="P:protein folding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.120.790">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.565.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00505">
        <property type="entry name" value="HSP90"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003594">
        <property type="entry name" value="HATPase_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036890">
        <property type="entry name" value="HATPase_C_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037196">
        <property type="entry name" value="HSP90_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001404">
        <property type="entry name" value="Hsp90_fam"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020575">
        <property type="entry name" value="Hsp90_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020568">
        <property type="entry name" value="Ribosomal_S5_D2-typ_fold"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11528">
        <property type="entry name" value="PTHR11528"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02518">
        <property type="entry name" value="HATPase_c"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00183">
        <property type="entry name" value="HSP90"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF002583">
        <property type="entry name" value="Hsp90"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00775">
        <property type="entry name" value="HEATSHOCK90"/>
    </dbReference>
    <dbReference type="SMART" id="SM00387">
        <property type="entry name" value="HATPase_c"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF110942">
        <property type="entry name" value="SSF110942"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54211">
        <property type="entry name" value="SSF54211"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55874">
        <property type="entry name" value="SSF55874"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3 6" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="5 6" id="KW-0143">Chaperone</keyword>
    <keyword evidence="6" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="2 6" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4 6 8" id="KW-0346">Stress response</keyword>
    <feature type="domain" description="HATPase_c" evidence="7">
        <location>
            <begin position="26"/>
            <end position="183"/>
        </location>
    </feature>
    <feature type="region of interest" description="A; substrate-binding" evidence="6">
        <location>
            <begin position="1"/>
            <end position="343"/>
        </location>
    </feature>
    <feature type="region of interest" description="C" evidence="6">
        <location>
            <begin position="583"/>
            <end position="650"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00008239"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023016"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023186"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00505"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="SMART" id="SM00387"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="ABX33820.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="650" mass="72275" checksum="C019DE438CF45F14" modified="2008-01-15" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2021-06-02" version="54" xmlns="http://uniprot.org/uniprot">
    <accession>A9BUC6</accession>
    <name>A9BUC6_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="3">HupE/UreJ protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Daci_1184</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="4" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX33829.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012203115.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_1184"/>
    <dbReference type="EnsemblBacteria" id="ABX33829">
        <property type="protein sequence ID" value="ABX33829"/>
        <property type="gene ID" value="Daci_1184"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_1184"/>
    <dbReference type="eggNOG" id="COG2370">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_088877_0_1_4"/>
    <dbReference type="OMA" id="PFGMGES"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007038">
        <property type="entry name" value="HupE_UreJ"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04955">
        <property type="entry name" value="HupE_UreJ"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF016919">
        <property type="entry name" value="HupE_UreJ"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0732">Signal</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="signal peptide" evidence="2">
        <location>
            <begin position="1"/>
            <end position="21"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5002735815" evidence="2">
        <location>
            <begin position="22"/>
            <end position="203"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="45"/>
            <end position="64"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="71"/>
            <end position="88"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="94"/>
            <end position="113"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="120"/>
            <end position="137"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="149"/>
            <end position="172"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="184"/>
            <end position="202"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ABX33829.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="203" mass="20598" checksum="B1D33C63D7DF481C" modified="2008-01-15" version="1">MFHPRLLLAPALLAAATAASAHTGAGAHLHAGDGAMQALMAGLSHPIAGLDHLLAMLALGLWCGLMLKRQWLPPVAFAACMALGLALTQTPLELPAVEPMVAASLLAFGLLLVAQRRLPVALAMVLAGAFALFHGYAHGEVFPHALPAAVFWAYMAGMVATTLVLHALGVAFGRAMRGGTASAWAARLAGVAAMGYGAVALAG</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="57" xmlns="http://uniprot.org/uniprot">
    <accession>A9BUH9</accession>
    <name>A9BUH9_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Phosphoglycerate mutase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_1238</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX33882.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012203168.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_1238"/>
    <dbReference type="PRIDE" id="A9BUH9"/>
    <dbReference type="EnsemblBacteria" id="ABX33882">
        <property type="protein sequence ID" value="ABX33882"/>
        <property type="gene ID" value="Daci_1238"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_1238"/>
    <dbReference type="eggNOG" id="COG0406">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_033323_9_5_4"/>
    <dbReference type="OMA" id="TEWNVAR"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006094">
        <property type="term" value="P:gluconeogenesis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd07067">
        <property type="entry name" value="HP_PGM_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.1240">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013078">
        <property type="entry name" value="His_Pase_superF_clade-1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029033">
        <property type="entry name" value="His_PPase_superfam"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00300">
        <property type="entry name" value="His_Phos_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00855">
        <property type="entry name" value="PGAM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53254">
        <property type="entry name" value="SSF53254"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0312">Gluconeogenesis</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022432"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX33882.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="213" mass="23053" checksum="EC69248F8E7DC52E" modified="2008-01-15" version="1">MQATRIIAIRHGETAWNVDARIQGHLDIPLNDMGLWQAAQAGKALAGEPVAAIYSSDLLRAYVTAEAVAASTGATLTADKGLRERCFGRFEGQTFNDIEASHPEDALRWRKRDPEFVPAGGGESLLMLRDRISATVNRLASGHPGEQIVIVAHGGVMDVLYRLATHQEVQAPRTWALGNAAINRLLWTPQGLGLVGWGDVQHLEGGARDEVFS</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="81" xmlns="http://uniprot.org/uniprot">
    <accession>A9BUN6</accession>
    <name>A9BUN6_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">Ribonucleoside-diphosphate reductase subunit beta</fullName>
            <ecNumber evidence="3">1.17.4.1</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="8" type="ordered locus">Daci_1500</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="9" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="3">Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="3">
            <text>[thioredoxin]-disulfide + a 2'-deoxyribonucleoside 5'-diphosphate + H2O = [thioredoxin]-dithiol + a ribonucleoside 5'-diphosphate</text>
            <dbReference type="Rhea" id="RHEA:23252"/>
            <dbReference type="Rhea" id="RHEA-COMP:10698"/>
            <dbReference type="Rhea" id="RHEA-COMP:10700"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:29950"/>
            <dbReference type="ChEBI" id="CHEBI:50058"/>
            <dbReference type="ChEBI" id="CHEBI:57930"/>
            <dbReference type="ChEBI" id="CHEBI:73316"/>
            <dbReference type="EC" id="1.17.4.1"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="3 5">
            <name>Fe cation</name>
            <dbReference type="ChEBI" id="CHEBI:24875"/>
        </cofactor>
        <text evidence="3 5">Binds 2 iron ions per subunit.</text>
    </comment>
    <comment type="pathway">
        <text evidence="1 3">Genetic information processing; DNA replication.</text>
    </comment>
    <comment type="similarity">
        <text evidence="2 3">Belongs to the ribonucleoside diphosphate reductase small chain family.</text>
    </comment>
    <dbReference type="EC" id="1.17.4.1" evidence="3"/>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX34144.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012203430.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_1500"/>
    <dbReference type="PRIDE" id="A9BUN6"/>
    <dbReference type="EnsemblBacteria" id="ABX34144">
        <property type="protein sequence ID" value="ABX34144"/>
        <property type="gene ID" value="Daci_1500"/>
    </dbReference>
    <dbReference type="GeneID" id="60686039"/>
    <dbReference type="KEGG" id="dac:Daci_1500"/>
    <dbReference type="eggNOG" id="COG0208">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_035339_1_1_4"/>
    <dbReference type="OMA" id="KVGEYQR"/>
    <dbReference type="UniPathway" id="UPA00326"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004748">
        <property type="term" value="F:ribonucleoside-diphosphate reductase activity, thioredoxin disulfide as acceptor"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009263">
        <property type="term" value="P:deoxyribonucleotide biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006260">
        <property type="term" value="P:DNA replication"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniPathway"/>
    </dbReference>
    <dbReference type="CDD" id="cd01049">
        <property type="entry name" value="RNRR2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.620.20">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009078">
        <property type="entry name" value="Ferritin-like_SF"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012348">
        <property type="entry name" value="RNR-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR033909">
        <property type="entry name" value="RNR_small"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000358">
        <property type="entry name" value="RNR_small_fam"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR23409">
        <property type="entry name" value="PTHR23409"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00268">
        <property type="entry name" value="Ribonuc_red_sm"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF000355">
        <property type="entry name" value="NrdB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47240">
        <property type="entry name" value="SSF47240"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-0235">DNA replication</keyword>
    <keyword evidence="3 5" id="KW-0408">Iron</keyword>
    <keyword evidence="7" id="KW-0472">Membrane</keyword>
    <keyword evidence="3 5" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="3 8" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="7" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="7" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="200"/>
            <end position="222"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="6">
        <location>
            <begin position="1"/>
            <end position="26"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="6">
        <location>
            <begin position="1"/>
            <end position="22"/>
        </location>
    </feature>
    <feature type="active site" evidence="4">
        <location>
            <position position="142"/>
        </location>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <position position="104"/>
        </location>
        <ligand>
            <name>Fe cation</name>
            <dbReference type="ChEBI" id="CHEBI:24875"/>
            <label>1</label>
        </ligand>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <position position="135"/>
        </location>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <position position="138"/>
        </location>
        <ligand>
            <name>Fe cation</name>
            <dbReference type="ChEBI" id="CHEBI:24875"/>
            <label>1</label>
        </ligand>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <position position="208"/>
        </location>
        <ligand>
            <name>Fe cation</name>
            <dbReference type="ChEBI" id="CHEBI:24875"/>
            <label>2</label>
        </ligand>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <position position="242"/>
        </location>
        <ligand>
            <name>Fe cation</name>
            <dbReference type="ChEBI" id="CHEBI:24875"/>
            <label>2</label>
        </ligand>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <position position="245"/>
        </location>
        <ligand>
            <name>Fe cation</name>
            <dbReference type="ChEBI" id="CHEBI:24875"/>
            <label>2</label>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00005160"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00009303"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="PIRNR" id="PIRNR000355"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="PIRSR" id="PIRSR000355-1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="PIRSR" id="PIRSR000355-2"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="ABX34144.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="363" mass="41862" checksum="B4941C49A56B8E51" modified="2008-01-15" version="1">MLTFDDDATLSNTPSGAEAAPSTTHKRVNAADKRIINAKTDVNQLVPFKYKWAWEKYLATCANHWMPQEVNMNRDIALWKDPNGLTEDERRIIKRNLGFFVTADSLAANNIVLGTYRHITAPECRQFLLRQAFEEAIHTHAYQYIVESLGLDEGEIFNAYLEVPSIRDKDEFLIPFIEAIMDPAFKTGTFETDQTLLKSLIVFACLMEGLFFYVGFTQILALGRQNKMTGAAEQYQYILRDESMHCNFGIDLINQLKLENPQLWTPEFKEEITALFVKAVELEYRYAEDTMPRGVLGMNASMFKGYLRYIANRRATQIGLEALFPNEENPFPWMSEMIDLKKERNFFETRVIEYQTGGALSWD</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="70" xmlns="http://uniprot.org/uniprot">
    <accession>A9BUR5</accession>
    <name>A9BUR5_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Enoyl-CoA hydratase/isomerase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Daci_1529</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="4" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1 2">Belongs to the enoyl-CoA hydratase/isomerase family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX34173.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012203459.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_1529"/>
    <dbReference type="PRIDE" id="A9BUR5"/>
    <dbReference type="EnsemblBacteria" id="ABX34173">
        <property type="protein sequence ID" value="ABX34173"/>
        <property type="gene ID" value="Daci_1529"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_1529"/>
    <dbReference type="eggNOG" id="COG1024">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_009834_7_6_4"/>
    <dbReference type="OMA" id="MDMCLSA"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016853">
        <property type="term" value="F:isomerase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.12.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029045">
        <property type="entry name" value="ClpP/crotonase-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018376">
        <property type="entry name" value="Enoyl-CoA_hyd/isom_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001753">
        <property type="entry name" value="Enoyl-CoA_hydra/iso"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014748">
        <property type="entry name" value="Enoyl-CoA_hydra_C"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00378">
        <property type="entry name" value="ECH_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52096">
        <property type="entry name" value="SSF52096"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00166">
        <property type="entry name" value="ENOYL_COA_HYDRATASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-0413">Isomerase</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00005254"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="RuleBase" id="RU003707"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ABX34173.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="259" mass="27841" checksum="89BB82CB2F06F372" modified="2008-01-15" version="1">MAYEMIEVRVEADKVGIITLNRPKQLNALNDQLMDELGQALQAFDADEAIGCMIITGSEKAFAAGADIGAMAKYSFADAYKGDYITRNWEAIRSIRKPVIAAVSGFALGGGCELAMMCDFIIAADNAKFGQPEIKLGVIPGAGGTQRLPRAVGKSKAMDMALTARMMDATEAERAGLVSRVVPFDKLMDEALGAAIIISGFSQIAVMAAKESVNRAFEGSLADGVMFERRLFHALFATQDQKEGMDAFVNKRPASFKHL</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="51" xmlns="http://uniprot.org/uniprot">
    <accession>A9BV08</accession>
    <name>A9BV08_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">tRNA-uridine aminocarboxypropyltransferase</fullName>
            <ecNumber evidence="1">2.5.1.25</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="6" type="ordered locus">Daci_1830</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="7" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EC" id="2.5.1.25" evidence="1"/>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX34470.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012203755.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_1830"/>
    <dbReference type="PRIDE" id="A9BV08"/>
    <dbReference type="EnsemblBacteria" id="ABX34470">
        <property type="protein sequence ID" value="ABX34470"/>
        <property type="gene ID" value="Daci_1830"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_1830"/>
    <dbReference type="eggNOG" id="COG3148">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_066458_2_3_4"/>
    <dbReference type="OMA" id="HTLCKYQ"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016432">
        <property type="term" value="F:tRNA-uridine aminocarboxypropyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008033">
        <property type="term" value="P:tRNA processing"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005636">
        <property type="entry name" value="DTW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR039262">
        <property type="entry name" value="DTWD2/YfiP"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR21392">
        <property type="entry name" value="PTHR21392"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03942">
        <property type="entry name" value="DTW"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM01144">
        <property type="entry name" value="DTW"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0949">S-adenosyl-L-methionine</keyword>
    <keyword evidence="2" id="KW-0808">Transferase</keyword>
    <keyword evidence="4" id="KW-0819">tRNA processing</keyword>
    <feature type="domain" description="DTW" evidence="5">
        <location>
            <begin position="6"/>
            <end position="211"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00012386"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022691"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022694"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="SMART" id="SM01144"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="ABX34470.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="212" mass="23037" checksum="DBEA8AC2A93AEA3E" modified="2008-01-15" version="1">MSAVSTRARCAQCLRPERTCLCPLVQPVPHAVQLLVLQHPEEELQAKGTGRLLHLCLPASRLAVGEAFEPAQLQALLHAPWQAGDAPRQAVLLYPETPHGDQLGLARQAPWPQPAPCPEDLRLVVLDATWRKSRKMLYLNPGLQALPRLALQGDLPASRYGALRKAHAPGQLSTLEAAVCALQRLAPAGPSLQPLRDAFEGLLALHALHRPE</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="64" xmlns="http://uniprot.org/uniprot">
    <accession>A9BV48</accession>
    <name>A9BV48_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Type II and III secretion system protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ordered locus">Daci_2072</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="6" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the bacterial secretin family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX34712.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012203995.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_2072"/>
    <dbReference type="PRIDE" id="A9BV48"/>
    <dbReference type="EnsemblBacteria" id="ABX34712">
        <property type="protein sequence ID" value="ABX34712"/>
        <property type="gene ID" value="Daci_2072"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_2072"/>
    <dbReference type="eggNOG" id="COG4964">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_017952_2_0_4"/>
    <dbReference type="OMA" id="LMIVTPH"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009306">
        <property type="term" value="P:protein secretion"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001775">
        <property type="entry name" value="GspD/PilQ"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR032789">
        <property type="entry name" value="T2SS-T3SS_pil_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004846">
        <property type="entry name" value="T2SS/T3SS"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00263">
        <property type="entry name" value="Secretin"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13629">
        <property type="entry name" value="T2SS-T3SS_pil_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00811">
        <property type="entry name" value="BCTERIALGSPD"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="3">
        <location>
            <begin position="1"/>
            <end position="35"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5002732553" evidence="3">
        <location>
            <begin position="36"/>
            <end position="492"/>
        </location>
    </feature>
    <feature type="domain" description="T2SS-T3SS_pil_N" evidence="4">
        <location>
            <begin position="58"/>
            <end position="136"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="230"/>
            <end position="251"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="RuleBase" id="RU004003"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="Pfam" id="PF13629"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="ABX34712.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="492" mass="50741" checksum="9A0A18D014268779" modified="2008-01-15" version="1">MKCKNISTAGATPLQRAVWTLCGSMALLALPPAVSAPADTAGVQGMHAPGAGDMPSGDSLQLVAGRQHLMPLASTPGRIAVGDPNVLDVKLLRATPGSGAGAGGTELLLTPKAQGSTTLVVWPQKGGAPQRWEVQVRGQHLLLEKRLTSVPEHAQAVAELRQYAPAQTLLVDNAQIDVKSNTVQVDVQVVEFKKSAMKRIGVNIYSGGRNNQGFSFGSFSPGVVGSISTNTNGTGTGTGTGNTGTGGTGSGGVSNNTSSAIASAMSLVMTFGKAFSGAGIVTQLSILEGNGMARVLARPTLLAQTGQNASFLAGGELPIPVPARDGNIAIQYKEFGIKLQLTPTILSDDRIALKVSPEASDLDFNSGVTISGVTVPAIRTRRADTSVELADGESFVIGGLVSRATTSNVSKVPVLGDLPILGTFFKNLNYTQEESELVIIVTPRLVHPLPASTNLEALLPGAQSEQRNAGKVWLPYLAGGMSTQTAVPGFSY</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="85" xmlns="http://uniprot.org/uniprot">
    <accession>A9BVE3</accession>
    <name>A9BVE3_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="8">Methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="8" type="ordered locus">Daci_2372</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="9" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the methyl-accepting chemotaxis (MCP) protein family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX35010.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012204292.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_2372"/>
    <dbReference type="PRIDE" id="A9BVE3"/>
    <dbReference type="EnsemblBacteria" id="ABX35010">
        <property type="protein sequence ID" value="ABX35010"/>
        <property type="gene ID" value="Daci_2372"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_2372"/>
    <dbReference type="eggNOG" id="COG0840">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_000445_107_26_4"/>
    <dbReference type="OMA" id="AVFEHMW"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004888">
        <property type="term" value="F:transmembrane signaling receptor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006935">
        <property type="term" value="P:chemotaxis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0007165">
        <property type="term" value="P:signal transduction"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd00130">
        <property type="entry name" value="PAS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004090">
        <property type="entry name" value="Chemotax_Me-accpt_rcpt"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003660">
        <property type="entry name" value="HAMP_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004089">
        <property type="entry name" value="MCPsignal_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000014">
        <property type="entry name" value="PAS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035965">
        <property type="entry name" value="PAS-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013655">
        <property type="entry name" value="PAS_fold_3"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00672">
        <property type="entry name" value="HAMP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00015">
        <property type="entry name" value="MCPsignal"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08447">
        <property type="entry name" value="PAS_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00260">
        <property type="entry name" value="CHEMTRNSDUCR"/>
    </dbReference>
    <dbReference type="SMART" id="SM00304">
        <property type="entry name" value="HAMP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00283">
        <property type="entry name" value="MA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00091">
        <property type="entry name" value="PAS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55785">
        <property type="entry name" value="SSF55785"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00229">
        <property type="entry name" value="sensory_box"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50111">
        <property type="entry name" value="CHEMOTAXIS_TRANSDUC_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50885">
        <property type="entry name" value="HAMP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50112">
        <property type="entry name" value="PAS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-0472">Membrane</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0807">Transducer</keyword>
    <keyword evidence="4" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="4" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="4">
        <location>
            <begin position="163"/>
            <end position="190"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="4">
        <location>
            <begin position="196"/>
            <end position="217"/>
        </location>
    </feature>
    <feature type="domain" description="PAS" evidence="6">
        <location>
            <begin position="25"/>
            <end position="76"/>
        </location>
    </feature>
    <feature type="domain" description="HAMP" evidence="7">
        <location>
            <begin position="218"/>
            <end position="270"/>
        </location>
    </feature>
    <feature type="domain" description="Methyl-accepting transducer" evidence="5">
        <location>
            <begin position="275"/>
            <end position="504"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="3">
        <location>
            <begin position="540"/>
            <end position="579"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00029447"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00284"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="PROSITE" id="PS50111"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="PROSITE" id="PS50112"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="PROSITE" id="PS50885"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="ABX35010.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="579" mass="62384" checksum="CC3B79D2A1FEA164" modified="2008-01-15" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="79" xmlns="http://uniprot.org/uniprot">
    <accession>A9BVJ6</accession>
    <name>A9BVJ6_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="8 18">Succinate dehydrogenase flavoprotein subunit</fullName>
            <ecNumber evidence="7 18">1.3.5.1</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="21" type="ordered locus">Daci_2425</name>
    </gene>
    <organism evidence="21 22">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="21 22" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="22">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="22" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="22">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="1 18">
            <text>a quinone + succinate = a quinol + fumarate</text>
            <dbReference type="Rhea" id="RHEA:40523"/>
            <dbReference type="ChEBI" id="CHEBI:24646"/>
            <dbReference type="ChEBI" id="CHEBI:29806"/>
            <dbReference type="ChEBI" id="CHEBI:30031"/>
            <dbReference type="ChEBI" id="CHEBI:132124"/>
            <dbReference type="EC" id="1.3.5.1"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="2 18">
            <name>FAD</name>
            <dbReference type="ChEBI" id="CHEBI:57692"/>
        </cofactor>
    </comment>
    <comment type="pathway">
        <text evidence="5 18">Carbohydrate metabolism; tricarboxylic acid cycle; fumarate from succinate (bacterial route): step 1/1.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="4 18">Cell inner membrane</location>
            <topology evidence="4 18">Peripheral membrane protein</topology>
            <orientation evidence="4 18">Cytoplasmic side</orientation>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="3">Membrane</location>
            <topology evidence="3">Peripheral membrane protein</topology>
            <orientation evidence="3">Cytoplasmic side</orientation>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="6 18">Belongs to the FAD-dependent oxidoreductase 2 family. FRD/SDH subfamily.</text>
    </comment>
    <dbReference type="EC" id="1.3.5.1" evidence="7 18"/>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX35063.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012204345.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_2425"/>
    <dbReference type="PRIDE" id="A9BVJ6"/>
    <dbReference type="EnsemblBacteria" id="ABX35063">
        <property type="protein sequence ID" value="ABX35063"/>
        <property type="gene ID" value="Daci_2425"/>
    </dbReference>
    <dbReference type="GeneID" id="60686795"/>
    <dbReference type="KEGG" id="dac:Daci_2425"/>
    <dbReference type="eggNOG" id="COG1053">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_014312_6_2_4"/>
    <dbReference type="OMA" id="DPIPIQP"/>
    <dbReference type="UniPathway" id="UPA00223">
        <property type="reaction ID" value="UER01005"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0050660">
        <property type="term" value="F:flavin adenine dinucleotide binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008177">
        <property type="term" value="F:succinate dehydrogenase (ubiquinone) activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0022900">
        <property type="term" value="P:electron transport chain"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006099">
        <property type="term" value="P:tricarboxylic acid cycle"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniPathway"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.50.50.60">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.700.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003953">
        <property type="entry name" value="FAD-binding_2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036188">
        <property type="entry name" value="FAD/NAD-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003952">
        <property type="entry name" value="FRD_SDH_FAD_BS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037099">
        <property type="entry name" value="Fum_R/Succ_DH_flav-like_C_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015939">
        <property type="entry name" value="Fum_Rdtase/Succ_DH_flav-like_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR030664">
        <property type="entry name" value="SdhA/FrdA/AprA"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027477">
        <property type="entry name" value="Succ_DH/fumarate_Rdtase_cat_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011281">
        <property type="entry name" value="Succ_DH_flav_su_fwd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014006">
        <property type="entry name" value="Succ_Dhase_FrdA_Gneg"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11632">
        <property type="entry name" value="PTHR11632"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00890">
        <property type="entry name" value="FAD_binding_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02910">
        <property type="entry name" value="Succ_DH_flav_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46977">
        <property type="entry name" value="SSF46977"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51905">
        <property type="entry name" value="SSF51905"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56425">
        <property type="entry name" value="SSF56425"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01816">
        <property type="entry name" value="sdhA_forward"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01812">
        <property type="entry name" value="sdhA_frdA_Gneg"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00504">
        <property type="entry name" value="FRD_SDH_FAD_BINDING"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="18" id="KW-0997">Cell inner membrane</keyword>
    <keyword evidence="18" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="13 18" id="KW-0249">Electron transport</keyword>
    <keyword evidence="12 18" id="KW-0274">FAD</keyword>
    <keyword evidence="11 18" id="KW-0285">Flavoprotein</keyword>
    <keyword evidence="15 18" id="KW-0472">Membrane</keyword>
    <keyword evidence="14 18 21" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="22" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="9 18" id="KW-0813">Transport</keyword>
    <keyword evidence="10 18" id="KW-0816">Tricarboxylic acid cycle</keyword>
    <feature type="domain" description="FAD_binding_2" evidence="19">
        <location>
            <begin position="14"/>
            <end position="408"/>
        </location>
    </feature>
    <feature type="domain" description="Succ_DH_flav_C" evidence="20">
        <location>
            <begin position="466"/>
            <end position="600"/>
        </location>
    </feature>
    <feature type="active site" description="Proton acceptor" evidence="16">
        <location>
            <position position="291"/>
        </location>
    </feature>
    <feature type="modified residue" description="Tele-8alpha-FAD histidine" evidence="17">
        <location>
            <position position="50"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00000030"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00001974"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00004287"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00004515"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00004894"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00008040"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00012792"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00019965"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00022448"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00022532"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="ARBA" id="ARBA00022630"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="12">
        <source>
            <dbReference type="ARBA" id="ARBA00022827"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="13">
        <source>
            <dbReference type="ARBA" id="ARBA00022982"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="14">
        <source>
            <dbReference type="ARBA" id="ARBA00023002"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="15">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="16">
        <source>
            <dbReference type="PIRSR" id="PIRSR611281-1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="17">
        <source>
            <dbReference type="PIRSR" id="PIRSR611281-4"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="18">
        <source>
            <dbReference type="RuleBase" id="RU362051"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="19">
        <source>
            <dbReference type="Pfam" id="PF00890"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="20">
        <source>
            <dbReference type="Pfam" id="PF02910"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="21">
        <source>
            <dbReference type="EMBL" id="ABX35063.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="22">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="601" mass="65800" checksum="FD652EA2921D6D32" modified="2008-01-15" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="70" xmlns="http://uniprot.org/uniprot">
    <accession>A9BVQ1</accession>
    <name>A9BVQ1_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="7">Cytochrome c oxidase, cbb3-type, subunit II</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ordered locus">Daci_2776</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="8" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX35414.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012204624.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_2776"/>
    <dbReference type="PRIDE" id="A9BVQ1"/>
    <dbReference type="EnsemblBacteria" id="ABX35414">
        <property type="protein sequence ID" value="ABX35414"/>
        <property type="gene ID" value="Daci_2776"/>
    </dbReference>
    <dbReference type="GeneID" id="60687041"/>
    <dbReference type="KEGG" id="dac:Daci_2776"/>
    <dbReference type="eggNOG" id="COG2993">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_050647_1_0_4"/>
    <dbReference type="OMA" id="TDWHENH"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009055">
        <property type="term" value="F:electron transfer activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0020037">
        <property type="term" value="F:heme binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.760.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009056">
        <property type="entry name" value="Cyt_c-like_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036909">
        <property type="entry name" value="Cyt_c-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003468">
        <property type="entry name" value="Cyt_c_oxidase_monohaem-su/FixO"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02433">
        <property type="entry name" value="FixO"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46626">
        <property type="entry name" value="SSF46626"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00781">
        <property type="entry name" value="ccoO"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51007">
        <property type="entry name" value="CYTC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1 4" id="KW-0349">Heme</keyword>
    <keyword evidence="3 4" id="KW-0408">Iron</keyword>
    <keyword evidence="5" id="KW-0472">Membrane</keyword>
    <keyword evidence="2 4" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="5" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="5" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="21"/>
            <end position="45"/>
        </location>
    </feature>
    <feature type="domain" description="Cytochrome c" evidence="6">
        <location>
            <begin position="61"/>
            <end position="206"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022617"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023004"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00433"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="PROSITE" id="PS51007"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="ABX35414.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="210" mass="23715" checksum="F034571B16B26884" modified="2008-01-15" version="1">MSDHNNSAPKSFSHEKVETNNFLLIVLTLLVVAVGGMVEIVPLFFQKSTTEAVAGLKPYTPLQLMGRDVYLREGCYNCHSQMIRPFRAETMRYGHYSVAGEFVYDHPFQWGSKRTGPDLHRVGGKYSDEWHRIHLNNPRDVVPESNMPAYTWLEKNKVDDTVVAQHMSALRKVGVPYSDEEISGAAEQVKGKTEMDAVIAYLQVLGRSVK</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="73" xmlns="http://uniprot.org/uniprot">
    <accession>A9BVS7</accession>
    <name>A9BVS7_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="5 8">Corrinoid adenosyltransferase</fullName>
            <ecNumber evidence="5 8">2.5.1.17</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="8">Cob(II)alamin adenosyltransferase</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="8">Cob(II)yrinic acid a,c-diamide adenosyltransferase</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="9" type="ordered locus">Daci_2802</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="9 10" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="10" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="7 8">Required for both de novo synthesis of the corrin ring for the assimilation of exogenous corrinoids. Participates in the adenosylation of a variety of incomplete and complete corrinoids.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="2 8">
            <text>2 ATP + 2 cob(II)alamin + reduced [electron-transfer flavoprotein] = 2 adenosylcob(III)alamin + 3 H(+) + oxidized [electron-transfer flavoprotein] + 2 triphosphate</text>
            <dbReference type="Rhea" id="RHEA:28671"/>
            <dbReference type="Rhea" id="RHEA-COMP:10685"/>
            <dbReference type="Rhea" id="RHEA-COMP:10686"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:16304"/>
            <dbReference type="ChEBI" id="CHEBI:18036"/>
            <dbReference type="ChEBI" id="CHEBI:18408"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:57692"/>
            <dbReference type="ChEBI" id="CHEBI:58307"/>
            <dbReference type="EC" id="2.5.1.17"/>
        </reaction>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1 8">
            <text>2 ATP + 2 cob(II)yrinate a,c diamide + reduced [electron-transfer flavoprotein] = 2 adenosylcob(III)yrinate a,c-diamide + 3 H(+) + oxidized [electron-transfer flavoprotein] + 2 triphosphate</text>
            <dbReference type="Rhea" id="RHEA:11528"/>
            <dbReference type="Rhea" id="RHEA-COMP:10685"/>
            <dbReference type="Rhea" id="RHEA-COMP:10686"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:18036"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:57692"/>
            <dbReference type="ChEBI" id="CHEBI:58307"/>
            <dbReference type="ChEBI" id="CHEBI:58503"/>
            <dbReference type="ChEBI" id="CHEBI:58537"/>
            <dbReference type="EC" id="2.5.1.17"/>
        </reaction>
    </comment>
    <comment type="pathway">
        <text evidence="3 8">Cofactor biosynthesis; adenosylcobalamin biosynthesis; adenosylcobalamin from cob(II)yrinate a,c-diamide: step 2/7.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="8">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="4 8">Belongs to the Cob(I)alamin adenosyltransferase family.</text>
    </comment>
    <dbReference type="EC" id="2.5.1.17" evidence="5 8"/>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX35440.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012204650.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_2802"/>
    <dbReference type="PRIDE" id="A9BVS7"/>
    <dbReference type="EnsemblBacteria" id="ABX35440">
        <property type="protein sequence ID" value="ABX35440"/>
        <property type="gene ID" value="Daci_2802"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_2802"/>
    <dbReference type="eggNOG" id="COG2109">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_088595_0_1_4"/>
    <dbReference type="OMA" id="HAMGEGF"/>
    <dbReference type="UniPathway" id="UPA00148">
        <property type="reaction ID" value="UER00233"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008817">
        <property type="term" value="F:cob(I)yrinic acid a,c-diamide adenosyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009236">
        <property type="term" value="P:cobalamin biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006779">
        <property type="term" value="P:porphyrin-containing compound biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd00561">
        <property type="entry name" value="CobA_CobO_BtuR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003724">
        <property type="entry name" value="CblAdoTrfase_CobA"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02572">
        <property type="entry name" value="CobA_CobO_BtuR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF015617">
        <property type="entry name" value="Adensltrnsf_CobA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00708">
        <property type="entry name" value="cobA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="8" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="8" id="KW-0169">Cobalamin biosynthesis</keyword>
    <keyword evidence="8" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="8" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="6 8" id="KW-0627">Porphyrin biosynthesis</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="8 9" id="KW-0808">Transferase</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00000143"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00001328"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00005121"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00007487"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00012454"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023244"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00024929"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="PIRNR" id="PIRNR015617"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="ABX35440.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="189" mass="21137" checksum="FE928F9EBF45FF81" modified="2008-01-15" version="1">MQIEQAPTVKPYEKPEGERRGLVLVNTGDGKGKSTAAFGLALRAHGRGKSVKIFQFMKVPTARFGEHRMFEQLGMPIEGLGDGFSWKSQDHERSAQIAREGWERARTAILSGDHFLVVLDEITYPLIYGWLPLEPVLQALADRPRHVHVMLTGRRCPEEIIAVADTVTRMELVKHAFQAGIPAQRGIED</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="57" xmlns="http://uniprot.org/uniprot">
    <accession>A9BVV8</accession>
    <name>A9BVV8_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ordered locus">Daci_2833</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="5" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Periplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the UPF0065 (bug) family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX35471.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012204681.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_2833"/>
    <dbReference type="PRIDE" id="A9BVV8"/>
    <dbReference type="EnsemblBacteria" id="ABX35471">
        <property type="protein sequence ID" value="ABX35471"/>
        <property type="gene ID" value="Daci_2833"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_2833"/>
    <dbReference type="eggNOG" id="COG3181">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_045683_0_0_4"/>
    <dbReference type="OMA" id="LGISWFG"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0042597">
        <property type="term" value="C:periplasmic space"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.190.150">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005064">
        <property type="entry name" value="BUG"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR042100">
        <property type="entry name" value="Bug_dom1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR42928">
        <property type="entry name" value="PTHR42928"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03401">
        <property type="entry name" value="TctC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF017082">
        <property type="entry name" value="YflP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="3">
        <location>
            <begin position="1"/>
            <end position="40"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5002736104" evidence="3">
        <location>
            <begin position="41"/>
            <end position="342"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004418"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00006987"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="ABX35471.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="342" mass="35722" checksum="D9D956CE20F7DFD5" modified="2008-01-15" version="1">MQAKPLFQLPRRTVLSLGTSGLAAVLCGLTLAHTISTAHAADAYPNKPVKLIVPFAAGGSTDIVARVIAEGLRSTLGQPVVVDNKAGAGGLIGTESIAQAAPDGYTIGMATVSTATINPSLYTRAAKLEGRLLPVANLVTMPSVYMVHPKMGVKDFPGFLAKLRAQPGAYSAGVPGLGTLGHLMVASFNETMKTQVQIVPYRGNGPALNDALAGMVQVMTDQLPSAMPQIKGGKLIPVALSGDSRSPDLPDVPTFKELGYAQLNELGISWFGLVVPAGTPPAIVRQLQDASVKAVRLPEVQKHLKLLGASVTEMDQSRFPAQIASELQRNKALLDKAGVKPE</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="74" xmlns="http://uniprot.org/uniprot">
    <accession>A9BVY9</accession>
    <name>A9BVY9_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Dihydropyrimidinase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ordered locus">Daci_2864</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="5" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="PTM">
        <text evidence="2">Carbamylation allows a single lysine to coordinate two divalent metal cations.</text>
    </comment>
    <comment type="similarity">
        <text evidence="1">Belongs to the metallo-dependent hydrolases superfamily. Hydantoinase/dihydropyrimidinase family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX35502.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012204712.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_2864"/>
    <dbReference type="MEROPS" id="M38.973"/>
    <dbReference type="PRIDE" id="A9BVY9"/>
    <dbReference type="EnsemblBacteria" id="ABX35502">
        <property type="protein sequence ID" value="ABX35502"/>
        <property type="gene ID" value="Daci_2864"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_2864"/>
    <dbReference type="eggNOG" id="COG0044">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_015572_2_2_4"/>
    <dbReference type="OMA" id="SAETHHM"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016810">
        <property type="term" value="F:hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd01314">
        <property type="entry name" value="D-HYD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.30.40.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006680">
        <property type="entry name" value="Amidohydro-rel"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011778">
        <property type="entry name" value="Hydantoinase/dihydroPyrase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011059">
        <property type="entry name" value="Metal-dep_hydrolase_composite"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR032466">
        <property type="entry name" value="Metal_Hydrolase"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01979">
        <property type="entry name" value="Amidohydro_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51338">
        <property type="entry name" value="SSF51338"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51556">
        <property type="entry name" value="SSF51556"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR02033">
        <property type="entry name" value="D-hydantoinase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Amidohydro-rel" evidence="3">
        <location>
            <begin position="57"/>
            <end position="442"/>
        </location>
    </feature>
    <feature type="modified residue" description="N6-carboxylysine" evidence="2">
        <location>
            <position position="157"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00008829"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="PIRSR" id="PIRSR611778-50"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF01979"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="ABX35502.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="486" mass="51841" checksum="1E1BFD2F6D345353" modified="2008-01-15" version="1">MGQSQGSVWVRGGTVVNADRQEKADVLCVDGAIAAVGPDVAALVPGGAQVIDASGQFVMPGGIDPHTHMQLPFMGTVTADDFYTGTAAALAGGTTSIIDFVIPDPQEPLLDAYRKWRGWAEKAAADYSFHVAVTWWSDSVHADMGTLVREEGINSFKHFMAYKNAIMCDDETLVNSFKRALELGAMPTVHAENGELVYLLQQEVAKMGITGPEGHPLARPPMVEAEAANRAIAIAGVLGVPIYVVHVSCTEAAQAIAAARARGQRVYGEVLAGHLVIDESVYRDPDFAKAAAHVMSPPFRAKGHQEALWQGLQSGQLHTTATDHCTFCAAQKAMGRDNFAKIPNGTGGVEERLAVIWDAGVNTGRLTPSEFVAITSANTARLFNIYPRKGLVGVGADADLVVWDPAATHTLSVKTQHSKGDYNIFEGRTVQGMPSHTISQGVVAYAKGDLRAEMGKGRYIKRPAFGPNFDAVQRRAATLQPTAVAR</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-01-19" version="32" xmlns="http://uniprot.org/uniprot">
    <accession>A9BW37</accession>
    <name>A9BW37_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Daci_3215</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="2" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX35853.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012205053.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_3215"/>
    <dbReference type="EnsemblBacteria" id="ABX35853">
        <property type="protein sequence ID" value="ABX35853"/>
        <property type="gene ID" value="Daci_3215"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_3215"/>
    <dbReference type="HOGENOM" id="CLU_1812617_0_0_4"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ABX35853.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="142" mass="15318" checksum="445D6A5D9BA1B294" modified="2008-01-15" version="1">MTKAWIVSGAVAVAALVLVAANYHIVTGSTVSGVTFQKKMSMSLSETFVNLDSVGNMPMIVARAQYPMFVASMERAITATEDALVKACGKDIQVGMSKGVVLHRCGQPANVETEDFDVEKMRWRTGLLVHVQHGLVTYVSGR</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="66" xmlns="http://uniprot.org/uniprot">
    <accession>A9BWC9</accession>
    <name>A9BWC9_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="1">L-carnitine dehydratase/bile acid-inducible protein F</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Daci_3513</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="2" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX36149.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012205349.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_3513"/>
    <dbReference type="PRIDE" id="A9BWC9"/>
    <dbReference type="EnsemblBacteria" id="ABX36149">
        <property type="protein sequence ID" value="ABX36149"/>
        <property type="gene ID" value="Daci_3513"/>
    </dbReference>
    <dbReference type="GeneID" id="60687739"/>
    <dbReference type="KEGG" id="dac:Daci_3513"/>
    <dbReference type="eggNOG" id="COG1804">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_033975_2_1_4"/>
    <dbReference type="OMA" id="GDHPCAM"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003824">
        <property type="term" value="F:catalytic activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.1540.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.10540">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003673">
        <property type="entry name" value="CoA-Trfase_fam_III"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR044855">
        <property type="entry name" value="CoA-Trfase_III_dom3_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023606">
        <property type="entry name" value="CoA-Trfase_III_dom_1_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02515">
        <property type="entry name" value="CoA_transf_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF89796">
        <property type="entry name" value="SSF89796"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ABX36149.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="387" mass="41770" checksum="C7AF1A97A42720CA" modified="2008-01-15" version="1">MSFVPGERQGPKGPLSGVRVLDLSAYIAGPYGCSLLADQGAEVIKVEPPVGDNLRKYPSTLEAESRAFLGVNRSKWGMVLDLKDEADHAVLLRLVREADVLVHNFRPGVPERLGIGFAQLAAINPRLIYCSVTGYGSRGPLKAKAGYDQVLQTMTGMCAMQGKAGGPPEILYGSVVDYYASALVAGGVSSALYEREKSGLGQHVGVSLLRAALTMQSARMVWAEGEPREVGRDMRSGGITGIHPTREGYLYISANTAHFWAALCRKLDLPEVASDERYDSVRKRAQHRDVLVPLLRQALAGRSALEWEALFGEEVPCAAARTVEDMFDDPQVQAEGMVTRFEHPTLGSYRGFAGAVEFDRTPGPPAFAAPTLGQHTEALKAAAQESR</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="95" xmlns="http://uniprot.org/uniprot">
    <accession>A9BWD9</accession>
    <name>A9BWD9_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="5">Oxygen-dependent coproporphyrinogen-III oxidase</fullName>
            <shortName evidence="5">CPO</shortName>
            <shortName evidence="5">Coprogen oxidase</shortName>
            <shortName evidence="5">Coproporphyrinogenase</shortName>
            <ecNumber evidence="5">1.3.3.3</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="5" type="primary">hemF</name>
        <name evidence="7" type="ordered locus">Daci_3523</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="8" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="5">Involved in the heme biosynthesis. Catalyzes the aerobic oxidative decarboxylation of propionate groups of rings A and B of coproporphyrinogen-III to yield the vinyl groups in protoporphyrinogen-IX.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="5">
            <text>coproporphyrinogen III + 2 H(+) + O2 = 2 CO2 + 2 H2O + protoporphyrinogen IX</text>
            <dbReference type="Rhea" id="RHEA:18257"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:15379"/>
            <dbReference type="ChEBI" id="CHEBI:16526"/>
            <dbReference type="ChEBI" id="CHEBI:57307"/>
            <dbReference type="ChEBI" id="CHEBI:57309"/>
            <dbReference type="EC" id="1.3.3.3"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="5">
            <name>a divalent metal cation</name>
            <dbReference type="ChEBI" id="CHEBI:60240"/>
        </cofactor>
    </comment>
    <comment type="pathway">
        <text evidence="5">Porphyrin-containing compound metabolism; protoporphyrin-IX biosynthesis; protoporphyrinogen-IX from coproporphyrinogen-III (O2 route): step 1/1.</text>
    </comment>
    <comment type="subunit">
        <text evidence="1 5">Homodimer.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="5">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="5">Belongs to the aerobic coproporphyrinogen-III oxidase family.</text>
    </comment>
    <dbReference type="EC" id="1.3.3.3" evidence="5"/>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX36159.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012205359.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_3523"/>
    <dbReference type="PRIDE" id="A9BWD9"/>
    <dbReference type="EnsemblBacteria" id="ABX36159">
        <property type="protein sequence ID" value="ABX36159"/>
        <property type="gene ID" value="Daci_3523"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_3523"/>
    <dbReference type="eggNOG" id="COG0408">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_026169_0_1_4"/>
    <dbReference type="OMA" id="HDKGTLF"/>
    <dbReference type="UniPathway" id="UPA00251">
        <property type="reaction ID" value="UER00322"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004109">
        <property type="term" value="F:coproporphyrinogen oxidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0042803">
        <property type="term" value="F:protein homodimerization activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006782">
        <property type="term" value="P:protoporphyrinogen IX biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniPathway"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.1500.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00333">
        <property type="entry name" value="Coprogen_oxidas"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001260">
        <property type="entry name" value="Coprogen_oxidase_aer"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036406">
        <property type="entry name" value="Coprogen_oxidase_aer_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018375">
        <property type="entry name" value="Coprogen_oxidase_CS"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10755">
        <property type="entry name" value="PTHR10755"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01218">
        <property type="entry name" value="Coprogen_oxidas"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF000166">
        <property type="entry name" value="Coproporphyri_ox"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00073">
        <property type="entry name" value="COPRGNOXDASE"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF102886">
        <property type="entry name" value="SSF102886"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01021">
        <property type="entry name" value="COPROGEN_OXIDASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="3 5" id="KW-0350">Heme biosynthesis</keyword>
    <keyword evidence="5" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="2 5 7" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="4 5" id="KW-0627">Porphyrin biosynthesis</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Substrate binding" evidence="5">
        <location>
            <begin position="122"/>
            <end position="124"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="6">
        <location>
            <begin position="139"/>
            <end position="171"/>
        </location>
    </feature>
    <feature type="region of interest" description="Important for dimerization" evidence="5">
        <location>
            <begin position="294"/>
            <end position="329"/>
        </location>
    </feature>
    <feature type="region of interest" description="Substrate binding" evidence="5">
        <location>
            <begin position="312"/>
            <end position="314"/>
        </location>
    </feature>
    <feature type="active site" description="Proton donor" evidence="5">
        <location>
            <position position="120"/>
        </location>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <position position="106"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <position position="110"/>
        </location>
        <ligand>
            <name>a divalent metal cation</name>
            <dbReference type="ChEBI" id="CHEBI:60240"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <position position="120"/>
        </location>
        <ligand>
            <name>a divalent metal cation</name>
            <dbReference type="ChEBI" id="CHEBI:60240"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <position position="199"/>
        </location>
        <ligand>
            <name>a divalent metal cation</name>
            <dbReference type="ChEBI" id="CHEBI:60240"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <position position="229"/>
        </location>
        <ligand>
            <name>a divalent metal cation</name>
            <dbReference type="ChEBI" id="CHEBI:60240"/>
        </ligand>
    </feature>
    <feature type="site" description="Important for dimerization" evidence="5">
        <location>
            <position position="229"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00011738"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023002"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023133"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023244"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00333"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="ABX36159.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="354" mass="38270" checksum="B4E9585BC919C960" modified="2008-01-15" version="1">MAEQSTGQALPVAQVREYLTGLQARITQALEQVEGEGGARFLSDTWSKGPGERLQGDGITRIMEGGRVFERAGCGFSHVRGPQLPPSATQHRPELAGAPFEAMGVSLVFHPRNPFVPTVHMNVRMIAAGLGAAGSGAAGSGAAGSGAAGSGAAGSGAAGSGAAGSGAAGQPGNEPTCWFGGGMDLTPVYGFEEDAQHFHRVCRDALAPFGDALYPRFKTWCDEYFCLKHRNEQRGIGGIFFDDFSELGQARSFDMLRSVGDSFLESYLPIVERRQAMDYGQQQVDFQRYRRGRYVEFNLVWDRGTHFGLQSGGRTESILLSMPPHASWSYQREDAPGTPERALLEQFLVRRDWL</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="42" xmlns="http://uniprot.org/uniprot">
    <accession>A9BWJ7</accession>
    <name>A9BWJ7_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_3583</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX36217.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012205417.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="PRIDE" id="A9BWJ7"/>
    <dbReference type="EnsemblBacteria" id="ABX36217">
        <property type="protein sequence ID" value="ABX36217"/>
        <property type="gene ID" value="Daci_3583"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_3583"/>
    <dbReference type="eggNOG" id="ENOG50341BX">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_972262_0_0_4"/>
    <dbReference type="OMA" id="CKGSAAN"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="1">
        <location>
            <begin position="1"/>
            <end position="23"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5002736119" evidence="1">
        <location>
            <begin position="24"/>
            <end position="286"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX36217.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="286" mass="31103" checksum="7472E15D19FE8E58" modified="2008-01-15" version="1">MSKRLNGLMAAALAAFISTPALAILPDSGMWSIGAELNGNPGRGIQIDRQGGSTLILTYFGYRADGSSLFLQAAGTLKDGKQFDGVLTEYRNGRALGGQARDGEFAQEAGPVRIVFDSSTTATITLPGEAPQRLQRFQFEDLRNRLNFTFFHSSAQDYARMSSSGEITFKVDANSLIAVERSNAGSIACEYSGNLQPTGDSFSSEGTAQCFFGATSQAYLYSMRELKVDEFGALTARFYFRHPSYPELRPSLRSVAGICKGSAANIDVYRCDPSDLKLDPGLWKEW</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="50" xmlns="http://uniprot.org/uniprot">
    <accession>A9BWK5</accession>
    <name>A9BWK5_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="6">DUF1232 domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="7" type="ordered locus">Daci_3901</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="8" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX36532.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012205726.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="PRIDE" id="A9BWK5"/>
    <dbReference type="EnsemblBacteria" id="ABX36532">
        <property type="protein sequence ID" value="ABX36532"/>
        <property type="gene ID" value="Daci_3901"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_3901"/>
    <dbReference type="eggNOG" id="COG3339">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_139031_0_0_4"/>
    <dbReference type="OMA" id="PRVPWYA"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010652">
        <property type="entry name" value="DUF1232"/>
    </dbReference>
    <dbReference type="Pfam" id="PF06803">
        <property type="entry name" value="DUF1232"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4 5" id="KW-0472">Membrane</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 5" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="3 5" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="32"/>
            <end position="53"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="65"/>
            <end position="85"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="106"/>
            <end position="126"/>
        </location>
    </feature>
    <feature type="domain" description="DUF1232" evidence="6">
        <location>
            <begin position="34"/>
            <end position="69"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="Pfam" id="PF06803"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="ABX36532.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="132" mass="14582" checksum="438149E936F723A4" modified="2008-01-15" version="1">MTAGERLKAWARRIKRDGVTLWFACKSPKTPWYAKALGAFVVAYALSPIDLIPDFIPVLGYVDDVLLLPALIWLTVRLLPPAVLADSRQQAEAWMQTQGCKPRSRAGVALVVGVWLCVCVGAFLAFRGRWGL</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2020-02-26" version="23" xmlns="http://uniprot.org/uniprot">
    <accession>A9BWK9</accession>
    <name>A9BWK9_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Daci_3905</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="2" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX36536.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="ABX36536">
        <property type="protein sequence ID" value="ABX36536"/>
        <property type="gene ID" value="Daci_3905"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_3905"/>
    <dbReference type="HOGENOM" id="CLU_2896649_0_0_4"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ABX36536.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="62" mass="6610" checksum="D39647C9A522279E" modified="2008-01-15" version="1">MADKKIRVGIFMASSVQGTDFCIAMIIPVIEIIGTHNAIGSNGVILTDGASLFKSFTVSHRE</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="79" xmlns="http://uniprot.org/uniprot">
    <accession>A9BXU1</accession>
    <name>A9BXU1_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Cyclic nucleotide-binding protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ordered locus">Daci_5739</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="5" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX38367.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012207536.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_5739"/>
    <dbReference type="PRIDE" id="A9BXU1"/>
    <dbReference type="EnsemblBacteria" id="ABX38367">
        <property type="protein sequence ID" value="ABX38367"/>
        <property type="gene ID" value="Daci_5739"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_5739"/>
    <dbReference type="eggNOG" id="COG0664">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_075053_3_5_4"/>
    <dbReference type="OMA" id="AEPTVHK"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006355">
        <property type="term" value="P:regulation of transcription, DNA-templated"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd00038">
        <property type="entry name" value="CAP_ED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.120.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018490">
        <property type="entry name" value="cNMP-bd-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000595">
        <property type="entry name" value="cNMP-bd_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012318">
        <property type="entry name" value="HTH_CRP"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014710">
        <property type="entry name" value="RmlC-like_jellyroll"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036390">
        <property type="entry name" value="WH_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00027">
        <property type="entry name" value="cNMP_binding"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13545">
        <property type="entry name" value="HTH_Crp_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00100">
        <property type="entry name" value="cNMP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46785">
        <property type="entry name" value="SSF46785"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51206">
        <property type="entry name" value="SSF51206"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50042">
        <property type="entry name" value="CNMP_BINDING_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51063">
        <property type="entry name" value="HTH_CRP_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Cyclic nucleotide-binding" evidence="2">
        <location>
            <begin position="17"/>
            <end position="137"/>
        </location>
    </feature>
    <feature type="domain" description="HTH crp-type" evidence="3">
        <location>
            <begin position="151"/>
            <end position="225"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS50042"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="PROSITE" id="PS51063"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="ABX38367.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="235" mass="25475" checksum="FA55F6EC12816239" modified="2008-01-15" version="1">MAHPTQPSSFALRGIALFEGLGSASLDRIAADCEWRPLQARQPVFSRCSTGSDVFFLVSGRVRITTYSAGGREVSFRDYGPGEHFGDLAAIDGQARSTDVVTLESSLLASLSRQDFLALLAREPAVALRMMEGLAGLVRRLTDRVMELSTLGVPTRLHMELLRLAREAGVSPEHTALISPVPSHSVLASKISTNREQVTRELGALTRRGLLRKEGRQALLVTDVNALQALIAQES</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-05-25" version="76" xmlns="http://uniprot.org/uniprot">
    <accession>A9BXV2</accession>
    <name>A9BXV2_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="8">Transport system permease protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="8" type="ordered locus">Daci_5750</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="9" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX38378.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012207547.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_5750"/>
    <dbReference type="EnsemblBacteria" id="ABX38378">
        <property type="protein sequence ID" value="ABX38378"/>
        <property type="gene ID" value="Daci_5750"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_5750"/>
    <dbReference type="eggNOG" id="COG0609">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_013016_0_3_4"/>
    <dbReference type="OMA" id="LLIRNPM"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0022857">
        <property type="term" value="F:transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.3470.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037294">
        <property type="entry name" value="ABC_BtuC-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000522">
        <property type="entry name" value="ABC_transptr_permease_BtuC"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30472">
        <property type="entry name" value="PTHR30472"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01032">
        <property type="entry name" value="FecCD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF81345">
        <property type="entry name" value="SSF81345"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="6 7" id="KW-0472">Membrane</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4 7" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="5 7" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="59"/>
            <end position="80"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="92"/>
            <end position="116"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="122"/>
            <end position="142"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="154"/>
            <end position="175"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="243"/>
            <end position="276"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="288"/>
            <end position="309"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="315"/>
            <end position="334"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00007935"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="ABX38378.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="340" mass="34089" checksum="F08E3EE64F1E32F3" modified="2008-01-15" version="1">MNSLSHPPAWRPWAGAVLLLLASLLIAACAGHQWASPADLLAALGGEDSLRSRLLLQWRVPRVLAAALVGALLGLSGAIFQGVFRNPLAEPYLLGASGGAALGATVALLVPMHLLFGLPQAWTLPVLAFAGAWGSTVLVLAVSRVAGATDAAGMLLAGVALAAVLGALRSFLMLALSDETVSLQVVLSWVLGGIQTPSWSGLGLLAGASLACLAGAMALARGLDLLGLGADAAQGFGLDVARFTPLAVLAGSLVVAVAVAYGGLVAFVGLAAPHIARWMAGPLHRAALPASALTGAIIVTLADAIARSVLPPAEIPLGLVTAVAGGPFFIVLLARRLRSA</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="60" xmlns="http://uniprot.org/uniprot">
    <accession>A9BY05</accession>
    <name>A9BY05_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Maleate isomerase</fullName>
            <ecNumber evidence="1">5.2.1.1</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="1">Maleate cis-trans isomerase</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="1" type="primary">maiA</name>
        <name evidence="2" type="ordered locus">Daci_1296</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="1">Catalyzes cis-trans isomerization of the C2-C3 double bond in maleate to yield fumarate.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>maleate = fumarate</text>
            <dbReference type="Rhea" id="RHEA:13169"/>
            <dbReference type="ChEBI" id="CHEBI:29806"/>
            <dbReference type="ChEBI" id="CHEBI:30780"/>
            <dbReference type="EC" id="5.2.1.1"/>
        </reaction>
    </comment>
    <comment type="subunit">
        <text evidence="1">Homodimer.</text>
    </comment>
    <comment type="miscellaneous">
        <text evidence="1">Reaction is initiated by nucleophilic attack of cysteine at the double bond, yielding a covalent succinylcysteine-like intermediate.</text>
    </comment>
    <comment type="similarity">
        <text evidence="1">Belongs to the maleate isomerase family.</text>
    </comment>
    <dbReference type="EC" id="5.2.1.1" evidence="1"/>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX33940.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012203226.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_1296"/>
    <dbReference type="PRIDE" id="A9BY05"/>
    <dbReference type="EnsemblBacteria" id="ABX33940">
        <property type="protein sequence ID" value="ABX33940"/>
        <property type="gene ID" value="Daci_1296"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_1296"/>
    <dbReference type="eggNOG" id="COG3473">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_068086_0_0_4"/>
    <dbReference type="OMA" id="DADSDRC"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0050076">
        <property type="term" value="F:maleate isomerase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00943">
        <property type="entry name" value="Maleate_isomerase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR026286">
        <property type="entry name" value="MaiA/AMDase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR028615">
        <property type="entry name" value="Maleate_isomerase"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR40267">
        <property type="entry name" value="PTHR40267"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF17645">
        <property type="entry name" value="Amdase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF015736">
        <property type="entry name" value="MI"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="1" id="KW-0413">Isomerase</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Substrate binding" evidence="1">
        <location>
            <begin position="82"/>
            <end position="84"/>
        </location>
    </feature>
    <feature type="region of interest" description="Substrate binding" evidence="1">
        <location>
            <begin position="201"/>
            <end position="202"/>
        </location>
    </feature>
    <feature type="active site" description="Nucleophile" evidence="1">
        <location>
            <position position="82"/>
        </location>
    </feature>
    <feature type="active site" description="Proton donor" evidence="1">
        <location>
            <position position="200"/>
        </location>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <position position="17"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <position position="139"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <position position="169"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="modified residue" description="S-(2-succinyl)cysteine" evidence="1">
        <location>
            <position position="82"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00943"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX33940.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="252" mass="27009" checksum="BF069630F84397C4" modified="2008-01-15" version="1">MTAKTHFRIGQIVPSSNTTMETEIPAILRAREALAPERFTFHSSRMRMKHVTKEELAAMDGDSDRCALELSDARVDVLGYACLVAIMSMGRGYHRVSEARLHQRTVDNGGPAPVVTSAGALVDGLHAIGAKKVALLAPYMKPLTQLVIDYIENEGIEVVDSISLEIADNLQVGAQDARAPIEITRRLNTANADAVIASACVQMPSLASVQPIEDRVGLPVLSSSVATTFMMLKRLGLPTAVPGFGALLSGKY</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="81" xmlns="http://uniprot.org/uniprot">
    <accession>A9BY49</accession>
    <name>A9BY49_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="7">Acetyl-CoA acetyltransferase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ordered locus">Daci_1340</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="8" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1 4">Belongs to the thiolase-like superfamily. Thiolase family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX33984.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012203270.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_1340"/>
    <dbReference type="PRIDE" id="A9BY49"/>
    <dbReference type="EnsemblBacteria" id="ABX33984">
        <property type="protein sequence ID" value="ABX33984"/>
        <property type="gene ID" value="Daci_1340"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_1340"/>
    <dbReference type="eggNOG" id="COG0183">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_031026_1_1_4"/>
    <dbReference type="OMA" id="DYYWGMG"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016747">
        <property type="term" value="F:acyltransferase activity, transferring groups other than amino-acyl groups"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd00751">
        <property type="entry name" value="thiolase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.47.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002155">
        <property type="entry name" value="Thiolase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016039">
        <property type="entry name" value="Thiolase-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020615">
        <property type="entry name" value="Thiolase_acyl_enz_int_AS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020610">
        <property type="entry name" value="Thiolase_AS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020617">
        <property type="entry name" value="Thiolase_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020613">
        <property type="entry name" value="Thiolase_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020616">
        <property type="entry name" value="Thiolase_N"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02803">
        <property type="entry name" value="Thiolase_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00108">
        <property type="entry name" value="Thiolase_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF000429">
        <property type="entry name" value="Ac-CoA_Ac_transf"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53901">
        <property type="entry name" value="SSF53901"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01930">
        <property type="entry name" value="AcCoA-C-Actrans"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00098">
        <property type="entry name" value="THIOLASE_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00737">
        <property type="entry name" value="THIOLASE_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00099">
        <property type="entry name" value="THIOLASE_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-0012">Acyltransferase</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 4 7" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Thiolase_N" evidence="5">
        <location>
            <begin position="8"/>
            <end position="266"/>
        </location>
    </feature>
    <feature type="domain" description="Thiolase_C" evidence="6">
        <location>
            <begin position="275"/>
            <end position="397"/>
        </location>
    </feature>
    <feature type="active site" description="Acyl-thioester intermediate" evidence="3">
        <location>
            <position position="94"/>
        </location>
    </feature>
    <feature type="active site" description="Proton acceptor" evidence="3">
        <location>
            <position position="354"/>
        </location>
    </feature>
    <feature type="active site" description="Proton acceptor" evidence="3">
        <location>
            <position position="384"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00010982"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="PIRSR" id="PIRSR000429-1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="RuleBase" id="RU003557"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="Pfam" id="PF00108"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="Pfam" id="PF02803"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="ABX33984.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="398" mass="41426" checksum="CEE5C2623E48BD05" modified="2008-01-15" version="1">MKQIQDAYIVAATRTPIGKSHKGFFRNYRPDDLLATTLKAALAQVPGLDPAAIEDIICGCAIPEAQQGLNVARISAVLAGLPTSVGGITVNRFCASGLSAVAMAADRIRVGEADVMIAAGVESMSMVPMMGNAPSLSPSIFERDGDVGIAYGMGLTAEKVAQQWKVSRDAQDAFALESHRRALAAQQAGEFKDEITPIEVTDRGLDLAKGEPVVRTRTVELDEGARPDTSLEGLAKLRTVFAARGSVTAGNSSQTSDGAGALILASGAAVQRFGLTPLARFVSYASKGVPPAIMGIGPIEAIPAALRYAGLKQDDIDWFELNEAFAAQSLAVVNTLGLDPAKVNPMGGAIALGHPLGATGAIRSATVVHALRRKQLRYGMVTMCVGMGQGAAGIFERV</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="59" xmlns="http://uniprot.org/uniprot">
    <accession>A9BYH8</accession>
    <name>A9BYH8_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Metal dependent phosphohydrolase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_1881</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX34521.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012203806.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_1881"/>
    <dbReference type="PRIDE" id="A9BYH8"/>
    <dbReference type="EnsemblBacteria" id="ABX34521">
        <property type="protein sequence ID" value="ABX34521"/>
        <property type="gene ID" value="Daci_1881"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_1881"/>
    <dbReference type="eggNOG" id="COG1418">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_070871_0_0_4"/>
    <dbReference type="OMA" id="HPRPDFK"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016787">
        <property type="term" value="F:hydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006674">
        <property type="entry name" value="HD_domain"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01966">
        <property type="entry name" value="HD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HD" evidence="1">
        <location>
            <begin position="32"/>
            <end position="117"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF01966"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX34521.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="213" mass="23748" checksum="B3476490B7AC95CA" modified="2008-01-15" version="1">MRLDIDGIRIPDSRLAREVTELVRDTASPLLFHHSSRVYYFGALAGARRGLAFDPELLYCGCMFHDMGLTHRHSSDCCRFEVDGANAAREFLRGHGIAAQDIDLVWTAIALHTTPGIPEFMHPVIALVTAGVEMDVLGLTYGDYADAQREAIVQAHPRGPRFKEEIIQAFYDGIRHKPQTTFGNVKADVLADKEPAFRPMNFCSVIRHSAWPG</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-01-19" version="41" xmlns="http://uniprot.org/uniprot">
    <accession>A9BYN4</accession>
    <name>A9BYN4_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Daci_1937</name>
        <name evidence="2" type="ordered locus">Daci_4103</name>
    </gene>
    <organism evidence="1 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
            <strain evidence="1">SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="1" key="3">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX34577.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX36734.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_1937"/>
    <dbReference type="EnsemblBacteria" id="ABX34577">
        <property type="protein sequence ID" value="ABX34577"/>
        <property type="gene ID" value="Daci_1937"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="ABX36734">
        <property type="protein sequence ID" value="ABX36734"/>
        <property type="gene ID" value="Daci_4103"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_1937"/>
    <dbReference type="KEGG" id="dac:Daci_4103"/>
    <dbReference type="eggNOG" id="ENOG5033K4J">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_171814_0_0_4"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ABX34577.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX36734.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="112" mass="12783" checksum="6CD94863C3021720" modified="2008-01-15" version="1">MTDRTPIDPQVAVDYMLQTAPRYAAAKAKRVQLEEFRKSKKAILMQQSEGKTVADREASAYAHPEYIELLNGLEAAVEAEELFRWKMKAAELQVEIWRSQEASSRAEGRVVR</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="45" xmlns="http://uniprot.org/uniprot">
    <accession>A9BYN5</accession>
    <name>A9BYN5_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Daci_1938</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="2" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX34578.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012203863.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_1938"/>
    <dbReference type="EnsemblBacteria" id="ABX34578">
        <property type="protein sequence ID" value="ABX34578"/>
        <property type="gene ID" value="Daci_1938"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_1938"/>
    <dbReference type="eggNOG" id="ENOG502ZJ2A">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_136724_0_0_4"/>
    <dbReference type="OMA" id="LHPHKAS"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ABX34578.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="110" mass="12105" checksum="A7A7672062267002" modified="2008-01-15" version="1">MKADQLAEIILRASTRNLDDEVRIVVHNPGKVGPRSSVPLQVAGYGMDWERGTFELIPAMPLTRLTPEDVAAIHKSVSAGSSWHAYQAHKKLHERIQQLEAEIAALKGGQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="71" xmlns="http://uniprot.org/uniprot">
    <accession>A9BYS6</accession>
    <name>A9BYS6_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="3 8">30S ribosomal protein S20</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="8" type="primary">rpsT</name>
        <name evidence="10" type="ordered locus">Daci_2181</name>
    </gene>
    <organism evidence="10 11">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="10 11" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="11">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="11" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="11">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="1 8">Binds directly to 16S ribosomal RNA.</text>
    </comment>
    <comment type="similarity">
        <text evidence="2 8">Belongs to the bacterial ribosomal protein bS20 family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX34821.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_2181"/>
    <dbReference type="PRIDE" id="A9BYS6"/>
    <dbReference type="EnsemblBacteria" id="ABX34821">
        <property type="protein sequence ID" value="ABX34821"/>
        <property type="gene ID" value="Daci_2181"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_2181"/>
    <dbReference type="eggNOG" id="COG0268">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_160655_4_0_4"/>
    <dbReference type="OMA" id="GVIHKNA"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005840">
        <property type="term" value="C:ribosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0019843">
        <property type="term" value="F:rRNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003735">
        <property type="term" value="F:structural constituent of ribosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006412">
        <property type="term" value="P:translation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.58.110">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00500">
        <property type="entry name" value="Ribosomal_S20"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002583">
        <property type="entry name" value="Ribosomal_S20"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036510">
        <property type="entry name" value="Ribosomal_S20_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33398">
        <property type="entry name" value="PTHR33398"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01649">
        <property type="entry name" value="Ribosomal_S20p"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46992">
        <property type="entry name" value="SSF46992"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00029">
        <property type="entry name" value="S20"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="11" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="7 8" id="KW-0687">Ribonucleoprotein</keyword>
    <keyword evidence="6 8 10" id="KW-0689">Ribosomal protein</keyword>
    <keyword evidence="5 8" id="KW-0694">RNA-binding</keyword>
    <keyword evidence="4 8" id="KW-0699">rRNA-binding</keyword>
    <feature type="region of interest" description="Disordered" evidence="9">
        <location>
            <begin position="1"/>
            <end position="28"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00003134"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00007634"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00015666"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022730"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022884"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022980"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023274"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00500"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="EMBL" id="ABX34821.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="97" mass="10448" checksum="869E477E314C4DF0" modified="2008-01-15" version="1">MASKPAKKNPRLASGRKRVRQDTKLNAANTSLRSKYRTAVKKVEKAVLTGDKAKATELFAAAQSVLDTIADKGIFHKNKAARDKSRLSAKVKALAAA</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="64" xmlns="http://uniprot.org/uniprot">
    <accession>A9BYU4</accession>
    <name>A9BYU4_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">NAD-dependent epimerase/dehydratase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_2199</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX34839.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012204122.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_2199"/>
    <dbReference type="PRIDE" id="A9BYU4"/>
    <dbReference type="EnsemblBacteria" id="ABX34839">
        <property type="protein sequence ID" value="ABX34839"/>
        <property type="gene ID" value="Daci_2199"/>
    </dbReference>
    <dbReference type="GeneID" id="60686593"/>
    <dbReference type="KEGG" id="dac:Daci_2199"/>
    <dbReference type="eggNOG" id="COG2910">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_025711_3_1_4"/>
    <dbReference type="OMA" id="DWTFLSP"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016040">
        <property type="entry name" value="NAD(P)-bd_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036291">
        <property type="entry name" value="NAD(P)-bd_dom_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13460">
        <property type="entry name" value="NAD_binding_10"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51735">
        <property type="entry name" value="SSF51735"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="NAD(P)-bd_dom" evidence="1">
        <location>
            <begin position="7"/>
            <end position="204"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF13460"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX34839.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="217" mass="22704" checksum="A3BE16AE858298BB" modified="2008-01-15" version="1">MKVALIGATGFVGSAVLKELLQRGHEVVALVRDPAKLAAQPRLQAVQADVLDAAAVQRAVAGADAVVSAYNAGWGNPDIYEDFMRGSRAIVAGTKAAGIKRYLVVGGAGSLYIAPGKQLVDTPEFPAAIKPGASAARDALNDLQKEQGLDWTMLSPPIALHLGDHGERTGQYRTGKDEPLMQADGQPGTISAADLAVALVDALDKGLHLRQRFTVAY</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="60" xmlns="http://uniprot.org/uniprot">
    <accession>A9BYX5</accession>
    <name>A9BYX5_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Daci_2230</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="4" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX34870.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012204153.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_2230"/>
    <dbReference type="PRIDE" id="A9BYX5"/>
    <dbReference type="EnsemblBacteria" id="ABX34870">
        <property type="protein sequence ID" value="ABX34870"/>
        <property type="gene ID" value="Daci_2230"/>
    </dbReference>
    <dbReference type="GeneID" id="60686624"/>
    <dbReference type="KEGG" id="dac:Daci_2230"/>
    <dbReference type="eggNOG" id="COG2959">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_036381_0_0_4"/>
    <dbReference type="OMA" id="QAIPRHQ"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007470">
        <property type="entry name" value="HemX"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR38043">
        <property type="entry name" value="PTHR38043"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04375">
        <property type="entry name" value="HemX"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="2" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="43"/>
            <end position="63"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="233"/>
            <end position="253"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ABX34870.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="380" mass="41247" checksum="64E393FAEC7E596F" modified="2008-01-15" version="1">MSSDAAQDRPTPQDLTPPASAAAFAAGSAQSSPAADLRSGSSALVLGVGAVAVAALIACGMLWQRLGNIQEQLARQSAQSGSQSVEARTLARDAQDLARDSAARTSVMEARIAELSLQRTQLDELLQSMSRSRDENLVVDIDSSIRLAQQQAELSGSLQPLVATLKNARQRIERAAQPRLAPVMRALDRDLERLARMSVTDTAGLLTRIEDLVRLVDEMPLLNAVAQPRASRHRGVAGQAARQPEPAPIEGSPTEWSWWQSWGERGWTAVREEAQDLLRVSRIDHPDAILLAPEQAYFLRENLKLKLLNSRLALLSRQWDAARADLAASGMAVNKYFDPAARRTQIVQAQLQQIQANLRTTEQPALQETLAALATAAAGR</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="70" xmlns="http://uniprot.org/uniprot">
    <accession>A9BYZ5</accession>
    <name>A9BYZ5_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Carbon-monoxide dehydrogenase (Acceptor)</fullName>
            <ecNumber evidence="3">1.2.99.2</ecNumber>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Daci_2250</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="4" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EC" id="1.2.99.2" evidence="3"/>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX34890.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012204173.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_2250"/>
    <dbReference type="PRIDE" id="A9BYZ5"/>
    <dbReference type="EnsemblBacteria" id="ABX34890">
        <property type="protein sequence ID" value="ABX34890"/>
        <property type="gene ID" value="Daci_2250"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_2250"/>
    <dbReference type="eggNOG" id="COG1319">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_058050_3_0_4"/>
    <dbReference type="OMA" id="YEFKYHR"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0071949">
        <property type="term" value="F:FAD binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016491">
        <property type="term" value="F:oxidoreductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.43.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.465.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005107">
        <property type="entry name" value="CO_DH_flav_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036683">
        <property type="entry name" value="CO_DH_flav_C_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016166">
        <property type="entry name" value="FAD-bd_PCMH"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036318">
        <property type="entry name" value="FAD-bd_PCMH-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016167">
        <property type="entry name" value="FAD-bd_PCMH_sub1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016169">
        <property type="entry name" value="FAD-bd_PCMH_sub2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002346">
        <property type="entry name" value="Mopterin_DH_FAD-bd"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00941">
        <property type="entry name" value="FAD_binding_5"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM01092">
        <property type="entry name" value="CO_deh_flav_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55447">
        <property type="entry name" value="SSF55447"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56176">
        <property type="entry name" value="SSF56176"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51387">
        <property type="entry name" value="FAD_PCMH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0274">FAD</keyword>
    <keyword evidence="1" id="KW-0285">Flavoprotein</keyword>
    <keyword evidence="3" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="FAD-binding PCMH-type" evidence="2">
        <location>
            <begin position="1"/>
            <end position="168"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022827"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS51387"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ABX34890.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="263" mass="27404" checksum="024B67119AA1D830" modified="2008-01-15" version="1">MYAFTYEAPGTTADAAALAAQGGQYLAGGQSLLPSMRLRLARPEQIVDLNRVQGLAGIAVDGQTVEIRAMTRHADVAANPQVQAAIPALAELAGGIGDRQVRARGTIGGSLANNDPAACYPSAVLGLGATVVTDRREIAADDFFQGMYTTALGSGELITAVRFPVPKKAAYLKFKQPASRFALVGVFVAQTDSGVRVAITGAGLSVFRHAGLEAALNQSFTPDAAAQVLIDHADLNSDLHASARYRAQLISVQTQRAVSQMLG</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="77" xmlns="http://uniprot.org/uniprot">
    <accession>A9BZD4</accession>
    <name>A9BZD4_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="11">TonB-dependent receptor</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="11" type="ordered locus">Daci_2896</name>
    </gene>
    <organism evidence="11 12">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="11 12" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="12">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="12" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="12">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="7">Cell outer membrane</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="1 7">Belongs to the TonB-dependent receptor family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX35534.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012204744.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_2896"/>
    <dbReference type="PRIDE" id="A9BZD4"/>
    <dbReference type="EnsemblBacteria" id="ABX35534">
        <property type="protein sequence ID" value="ABX35534"/>
        <property type="gene ID" value="Daci_2896"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_2896"/>
    <dbReference type="eggNOG" id="COG4773">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_008287_17_1_4"/>
    <dbReference type="OMA" id="RVAYWEQ"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009279">
        <property type="term" value="C:cell outer membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006811">
        <property type="term" value="P:ion transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="GO" id="GO:0071702">
        <property type="term" value="P:organic substance transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.170.130.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.170.20">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR039426">
        <property type="entry name" value="BtuB-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012910">
        <property type="entry name" value="Plug_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037066">
        <property type="entry name" value="Plug_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000531">
        <property type="entry name" value="TonB-dep_rcpt_b-brl"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036942">
        <property type="entry name" value="TonB_rcpt_b-brl_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010917">
        <property type="entry name" value="TonB_rcpt_CS"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30069">
        <property type="entry name" value="PTHR30069"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07715">
        <property type="entry name" value="Plug"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00593">
        <property type="entry name" value="TonB_dep_Rec"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01156">
        <property type="entry name" value="TONB_DEPENDENT_REC_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="6" id="KW-0998">Cell outer membrane</keyword>
    <keyword evidence="4 7" id="KW-0472">Membrane</keyword>
    <keyword evidence="5 11" id="KW-0675">Receptor</keyword>
    <keyword evidence="12" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 8" id="KW-0732">Signal</keyword>
    <keyword evidence="3 7" id="KW-0798">TonB box</keyword>
    <feature type="signal peptide" evidence="8">
        <location>
            <begin position="1"/>
            <end position="26"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5002733185" evidence="8">
        <location>
            <begin position="27"/>
            <end position="686"/>
        </location>
    </feature>
    <feature type="domain" description="Plug" evidence="10">
        <location>
            <begin position="60"/>
            <end position="168"/>
        </location>
    </feature>
    <feature type="domain" description="TonB_dep_Rec" evidence="9">
        <location>
            <begin position="251"/>
            <end position="685"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00009810"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022729"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023077"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023170"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023237"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="RuleBase" id="RU003357"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="9">
        <source>
            <dbReference type="Pfam" id="PF00593"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="10">
        <source>
            <dbReference type="Pfam" id="PF07715"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="EMBL" id="ABX35534.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="686" mass="75493" checksum="6FB7CAC8B3246BCB" modified="2008-01-15" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="59" xmlns="http://uniprot.org/uniprot">
    <accession>A9BZS9</accession>
    <name>A9BZS9_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Peptidase S41</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_3349</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX35987.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_3349"/>
    <dbReference type="PRIDE" id="A9BZS9"/>
    <dbReference type="EnsemblBacteria" id="ABX35987">
        <property type="protein sequence ID" value="ABX35987"/>
        <property type="gene ID" value="Daci_3349"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_3349"/>
    <dbReference type="eggNOG" id="COG0793">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_042250_0_0_4"/>
    <dbReference type="OMA" id="RPANGWH"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008236">
        <property type="term" value="F:serine-type peptidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006508">
        <property type="term" value="P:proteolysis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029045">
        <property type="entry name" value="ClpP/crotonase-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005151">
        <property type="entry name" value="Tail-specific_protease"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03572">
        <property type="entry name" value="Peptidase_S41"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52096">
        <property type="entry name" value="SSF52096"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="TSPc" evidence="1">
        <location>
            <begin position="306"/>
            <end position="495"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF03572"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX35987.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="557" mass="61659" checksum="448F877D2C2C8C2C" modified="2008-01-15" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="63" xmlns="http://uniprot.org/uniprot">
    <accession>A9BZW3</accession>
    <name>A9BZW3_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Cell division protein ZipA</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="6" type="ordered locus">Daci_3591</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="7" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="1">Essential cell division protein that stabilizes the FtsZ protofilaments by cross-linking them and that serves as a cytoplasmic membrane anchor for the Z ring. Also required for the recruitment to the septal ring of downstream cell division proteins.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="2">Cell inner membrane</location>
            <topology evidence="2">Single-pass type I membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="1">Belongs to the ZipA family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX36225.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012205425.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_3591"/>
    <dbReference type="PRIDE" id="A9BZW3"/>
    <dbReference type="EnsemblBacteria" id="ABX36225">
        <property type="protein sequence ID" value="ABX36225"/>
        <property type="gene ID" value="Daci_3591"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_3591"/>
    <dbReference type="eggNOG" id="COG3115">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_040030_0_0_4"/>
    <dbReference type="OMA" id="IDCIVPL"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0090529">
        <property type="term" value="P:cell septum assembly"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.1400.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007449">
        <property type="entry name" value="ZipA_FtsZ-bd_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036765">
        <property type="entry name" value="ZipA_FtsZ-bd_C_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04354">
        <property type="entry name" value="ZipA_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00771">
        <property type="entry name" value="ZipA_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF64383">
        <property type="entry name" value="SSF64383"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="1" id="KW-0131">Cell cycle</keyword>
    <keyword evidence="1" id="KW-0132">Cell division</keyword>
    <keyword evidence="2" id="KW-0997">Cell inner membrane</keyword>
    <keyword evidence="2" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="2 4" id="KW-0472">Membrane</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 4" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="4" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="4">
        <location>
            <begin position="6"/>
            <end position="25"/>
        </location>
    </feature>
    <feature type="domain" description="ZipA_C" evidence="5">
        <location>
            <begin position="297"/>
            <end position="424"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="3">
        <location>
            <begin position="30"/>
            <end position="84"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="3">
        <location>
            <begin position="133"/>
            <end position="163"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="3">
        <location>
            <begin position="32"/>
            <end position="54"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="3">
        <location>
            <begin position="139"/>
            <end position="163"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="RuleBase" id="RU003612"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="RuleBase" id="RU003613"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="SMART" id="SM00771"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="ABX36225.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="448" mass="47751" checksum="A52137BA4021CEA3" modified="2008-01-15" version="1">MSNLQISLAVLGFVVLALIIAYNSWSARRNAPKRADPVDEAQRDPSRHEPGMDTVGHGPDLTHSLREPVLGDFGSAAPGQSPASVDRFAETDAELAHLVQLEEQQRQAAAQAALAAKAAQAVQSAQAAHALQAGEDASASAPASESVSVPAASPSAPQSIEPSLNDAALTSAAASRPGLDALIDAIAPVQVGQAVPGELALQAQPATRRAGNKPFAIEGMNQSTHQWEPLQPGQRYLGFQAGVQLANRTGALNEIEFSEFVAKVQRFADALGATPDVPDMLQEVARARELDQFASEHDAQLTFMLRARQASWSAGYVQQNASRQGFLPGSMPGRMALPSPTPGMPPVLVLNYDPQAAMADDLDTSVVREFLLSLDVPQVPRGEQAFVQLRQVAERLCQTMDGVLCDQNGYLLPAMALDPIQHDLEHLYDKLDSRELSAGSMLARRLFS</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="60" xmlns="http://uniprot.org/uniprot">
    <accession>A9BZY9</accession>
    <name>A9BZY9_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Aminotransferase class I and II</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_3617</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX36251.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012205451.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_3617"/>
    <dbReference type="PRIDE" id="A9BZY9"/>
    <dbReference type="EnsemblBacteria" id="ABX36251">
        <property type="protein sequence ID" value="ABX36251"/>
        <property type="gene ID" value="Daci_3617"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_3617"/>
    <dbReference type="eggNOG" id="COG0436">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_017584_4_5_4"/>
    <dbReference type="OMA" id="NDECYSE"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030170">
        <property type="term" value="F:pyridoxal phosphate binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009016">
        <property type="term" value="F:succinyldiaminopimelate transaminase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009089">
        <property type="term" value="P:lysine biosynthetic process via diaminopimelate"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.640.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.1150.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004839">
        <property type="entry name" value="Aminotransferase_I/II"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019878">
        <property type="entry name" value="DapC_beta/gammaproteobac"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015424">
        <property type="entry name" value="PyrdxlP-dep_Trfase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015421">
        <property type="entry name" value="PyrdxlP-dep_Trfase_major"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015422">
        <property type="entry name" value="PyrdxlP-dep_Trfase_small"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00155">
        <property type="entry name" value="Aminotran_1_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53383">
        <property type="entry name" value="SSF53383"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR03538">
        <property type="entry name" value="DapC_gpp"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0032">Aminotransferase</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Aminotran_1_2" evidence="1">
        <location>
            <begin position="32"/>
            <end position="392"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF00155"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX36251.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="401" mass="43648" checksum="89CF921CD3CE7C86" modified="2008-01-15" version="1">MNPLLSRLQPYPFERLRKLFAGVQPPAGVRPISLGIGEPRHATPAFIEQALSADLGGLAKYPATAGEPALREACAQWARQRYGIALDAATQVLPVNGSREALFAFTQVVVDASQDGARVICPNPFYQIYEGATLLAGAQPYYAPSDAARNFAVDWDSVPADVWEKTQLIFVCSPGNPTGAVMPLAEWEKLFALSDRYGFVIASDECYSEIYFDGTAPLGGLEAAQRLGRTDYKNLLMFTSLSKRSNVPGLRSGFVAGDAALIKAFLLYRTYHGGAMSPVVQTASIAAWGDEAHVEENRRLYREKFNQVTPVLARVMNVRLPDASFYLWAGIPESLGLDDADFARELYAATGVTVLPGSYLAREANGRNPGAGRVRMALVAETAECLEAAQRIAQFIESRQR</sequence>
</entry>
<entry dataset="Swiss-Prot" created="2009-04-14" modified="2022-05-25" version="63" xmlns="http://uniprot.org/uniprot">
    <accession>A9C011</accession>
    <name>AMIE_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Aliphatic amidase</fullName>
            <ecNumber evidence="1">3.5.1.4</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="1">Acylamide amidohydrolase</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="1" type="primary">amiE</name>
        <name type="ordered locus">Daci_3641</name>
    </gene>
    <organism>
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference key="1">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain>DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="1">Catalyzes the hydrolysis of short-chain aliphatic amides to their corresponding organic acids with release of ammonia.</text>
    </comment>
    <comment type="function">
        <text evidence="1">Also exhibits in vitro acyl transferase activity, transferring the acyl moiety of short-chain amides to hydroxylamine to form hydroxamates.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>a monocarboxylic acid amide + H2O = a monocarboxylate + NH4(+)</text>
            <dbReference type="Rhea" id="RHEA:12020"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:28938"/>
            <dbReference type="ChEBI" id="CHEBI:35757"/>
            <dbReference type="ChEBI" id="CHEBI:83628"/>
            <dbReference type="EC" id="3.5.1.4"/>
        </reaction>
    </comment>
    <comment type="similarity">
        <text evidence="1">Belongs to the carbon-nitrogen hydrolase superfamily. Aliphatic amidase family.</text>
    </comment>
    <dbReference type="EC" id="3.5.1.4" evidence="1"/>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX36273.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012205469.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A9C011"/>
    <dbReference type="SMR" id="A9C011"/>
    <dbReference type="STRING" id="398578.Daci_3641"/>
    <dbReference type="PRIDE" id="A9C011"/>
    <dbReference type="EnsemblBacteria" id="ABX36273">
        <property type="protein sequence ID" value="ABX36273"/>
        <property type="gene ID" value="Daci_3641"/>
    </dbReference>
    <dbReference type="GeneID" id="60687881"/>
    <dbReference type="KEGG" id="dac:Daci_3641"/>
    <dbReference type="eggNOG" id="COG0388">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_071797_0_0_4"/>
    <dbReference type="OMA" id="PWVPIEG"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004040">
        <property type="term" value="F:amidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043864">
        <property type="term" value="F:indoleacetamide hydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006807">
        <property type="term" value="P:nitrogen compound metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.60.110.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01242">
        <property type="entry name" value="Aliphatic_amidase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023719">
        <property type="entry name" value="Aliphatic_amidase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003010">
        <property type="entry name" value="C-N_Hydrolase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036526">
        <property type="entry name" value="C-N_Hydrolase_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00795">
        <property type="entry name" value="CN_hydrolase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56317">
        <property type="entry name" value="SSF56317"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50263">
        <property type="entry name" value="CN_HYDROLASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword id="KW-0378">Hydrolase</keyword>
    <keyword id="KW-1185">Reference proteome</keyword>
    <feature type="chain" id="PRO_1000139805" description="Aliphatic amidase">
        <location>
            <begin position="1"/>
            <end position="345"/>
        </location>
    </feature>
    <feature type="domain" description="CN hydrolase" evidence="2">
        <location>
            <begin position="13"/>
            <end position="260"/>
        </location>
    </feature>
    <feature type="active site" description="Proton acceptor" evidence="1">
        <location>
            <position position="59"/>
        </location>
    </feature>
    <feature type="active site" description="Proton donor" evidence="1">
        <location>
            <position position="134"/>
        </location>
    </feature>
    <feature type="active site" description="Nucleophile" evidence="1">
        <location>
            <position position="166"/>
        </location>
    </feature>
    <evidence type="ECO:0000255" key="1">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01242"/>
        </source>
    </evidence>
    <evidence type="ECO:0000255" key="2">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00054"/>
        </source>
    </evidence>
    <sequence length="345" mass="38565" checksum="CC363F466F5921EC" modified="2008-01-15" version="1">MRHGDISSSNDCVGVAVVNYKMPRLHTKAEVLDNCRKIADMLVGMKRGLPGMDLVIFPEYSTHGIMYDAKEMYDTASAIPGEETEIFADACRRANVWGVFSLTGERHEEHPNKAPYNTLILMNNQGEIVQKYRKIMPWVPIEGWYPGDCTYVSEGPKGLKISLIICDDGNYPEIWRDCAMRGAELVVRCQGYMYPAKEQQIMVSKAMAFMNNCYVAVANAAGFDGVYSYFGHSAIIGFDGRTLGETGEEEMGIQYAELSKHLIRDARKNGQSQNHLFKLVHRGYTGTINSGDGDKGVAACPYNFYSQWVNDPEGTREMVESFTRTTVGTPECPIEGIPHEAPKHR</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="50" xmlns="http://uniprot.org/uniprot">
    <accession>A9C057</accession>
    <name>A9C057_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Propeptide PepSY amd peptidase M4</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Daci_3687</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="4" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX36319.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012205515.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_3687"/>
    <dbReference type="PRIDE" id="A9C057"/>
    <dbReference type="EnsemblBacteria" id="ABX36319">
        <property type="protein sequence ID" value="ABX36319"/>
        <property type="gene ID" value="Daci_3687"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_3687"/>
    <dbReference type="eggNOG" id="COG3212">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_1501045_0_0_4"/>
    <dbReference type="OMA" id="SHYDINI"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025711">
        <property type="entry name" value="PepSY"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03413">
        <property type="entry name" value="PepSY"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="1">
        <location>
            <begin position="1"/>
            <end position="29"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5002736201" evidence="1">
        <location>
            <begin position="30"/>
            <end position="181"/>
        </location>
    </feature>
    <feature type="domain" description="PepSY" evidence="2">
        <location>
            <begin position="43"/>
            <end position="98"/>
        </location>
    </feature>
    <feature type="domain" description="PepSY" evidence="2">
        <location>
            <begin position="122"/>
            <end position="177"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF03413"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ABX36319.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="181" mass="19124" checksum="CB448EEF88615B46" modified="2008-01-15" version="1">MKPAPFARTAALSIALALTCATAALPAAAKSVAEWQTITSQAKIPLEQAVTRATQAVPGKAIEAQLDDGDGMGLRYEIEVITPGGDSVEVWVNAITGQAAQHKNDGAAKRKDRQRLEKAKSTIEQAIQAATRHTPGTPVSAELDSHWGQTSYQVEVLQANGTLMEVKIDAVGGEVIRAKKD</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="74" xmlns="http://uniprot.org/uniprot">
    <accession>A9C067</accession>
    <name>A9C067_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="4">Aminotransferase</fullName>
            <ecNumber evidence="4">2.6.1.-</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="6" type="ordered locus">Daci_4002</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="7" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="1 4">
            <name>pyridoxal 5'-phosphate</name>
            <dbReference type="ChEBI" id="CHEBI:597326"/>
        </cofactor>
    </comment>
    <comment type="subunit">
        <text evidence="3">Homodimer.</text>
    </comment>
    <comment type="similarity">
        <text evidence="2 4">Belongs to the class-I pyridoxal-phosphate-dependent aminotransferase family.</text>
    </comment>
    <dbReference type="EC" id="2.6.1.-" evidence="4"/>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX36633.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012205827.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_4002"/>
    <dbReference type="PRIDE" id="A9C067"/>
    <dbReference type="EnsemblBacteria" id="ABX36633">
        <property type="protein sequence ID" value="ABX36633"/>
        <property type="gene ID" value="Daci_4002"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_4002"/>
    <dbReference type="eggNOG" id="COG1448">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_032440_1_2_4"/>
    <dbReference type="OMA" id="VGACTIV"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030170">
        <property type="term" value="F:pyridoxal phosphate binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008483">
        <property type="term" value="F:transaminase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:1901605">
        <property type="term" value="P:alpha-amino acid metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009058">
        <property type="term" value="P:biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.640.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.1150.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004839">
        <property type="entry name" value="Aminotransferase_I/II"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000796">
        <property type="entry name" value="Asp_trans"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004838">
        <property type="entry name" value="NHTrfase_class1_PyrdxlP-BS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015424">
        <property type="entry name" value="PyrdxlP-dep_Trfase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015421">
        <property type="entry name" value="PyrdxlP-dep_Trfase_major"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015422">
        <property type="entry name" value="PyrdxlP-dep_Trfase_small"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11879">
        <property type="entry name" value="PTHR11879"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00155">
        <property type="entry name" value="Aminotran_1_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00799">
        <property type="entry name" value="TRANSAMINASE"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53383">
        <property type="entry name" value="SSF53383"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00105">
        <property type="entry name" value="AA_TRANSFER_CLASS_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4 6" id="KW-0032">Aminotransferase</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4 6" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Aminotran_1_2" evidence="5">
        <location>
            <begin position="29"/>
            <end position="394"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001933"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00007441"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00011738"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="RuleBase" id="RU000481"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="Pfam" id="PF00155"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="ABX36633.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="398" mass="42456" checksum="5D7FAF08E50CF574" modified="2008-01-15" version="1">MSLFTAVEMAPRDPILGLNEQFAADTNPSKVNLGVGVYFDDNGKLPLLECVQAAEKAMMDKPTARGYLPIDGIAAYDAAVKGLVFGAESDVVKSGRVSTVQAIGGTGGLKIGADFLKKISPAAKVLISDPSWENHKAIFTNAGFEVGTYAYYDAVNRKVNFEGMLADLNAAAAGTIVVLHACCHNPTGYDITAEQWDQVIAAVKAKGLVAFLDMAYQGFGHGIAEDGAVIGKFVAAGLNIFVSTSFSKSFSLYGERVGALSVVANDKEEAARVLSQLKIVIRTNYSNPPTHGGAVVAAVLNNPELRALWEKELGEMRVRIKAMRQKLVDGLKAAGVQQDMGFITTQIGMFSYSGLSKDQMVRLRTEFGVYGTDTGRMCVAALNSKNIDYVCQSIAKVV</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="48" xmlns="http://uniprot.org/uniprot">
    <accession>A9C081</accession>
    <name>A9C081_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_4016</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX36647.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012205841.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="PRIDE" id="A9C081"/>
    <dbReference type="EnsemblBacteria" id="ABX36647">
        <property type="protein sequence ID" value="ABX36647"/>
        <property type="gene ID" value="Daci_4016"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_4016"/>
    <dbReference type="eggNOG" id="COG5563">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_668807_0_0_4"/>
    <dbReference type="OMA" id="AVIWESH"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="1">
        <location>
            <begin position="1"/>
            <end position="25"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5002735263" evidence="1">
        <location>
            <begin position="26"/>
            <end position="404"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX36647.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="404" mass="41339" checksum="56B45E628397BBC1" modified="2008-01-15" version="1">MRLQPKHLNFSVACLALLALPAAQALPMQDVGTSAGPQCVGLDINNSGHVVGACAESDGSSAGFVSLAPGSAADLARLSPGRNCNAAAITNSGQVVGSCLDGNSVSVGVFWNAATPATVQTLQPLTLDVRSMPTAFNQGGYVAGVSLSGSNTARPVMWRNNETTARALPAGLLGLNSTNCVPSDVDNFVVGGNMPGIVGNCPDNSGHPRPVYWSAAVLGGYMATALNLPLNAVFCRAKTVVNTRIMGYCDFGAQGGRTVVWLNSSSSPQVLSISSPPARNSGVDLNILGEVIGHYQLADGRSMPYYWNSQTGVIRDIPPLPGGMNARVVDIGDNGTVAGHSELADGSSHAITWTPLGGTVDQGTLAGGENSAASALSQDGCYMTGRSEVAQLATHAFVQNLCTP</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="64" xmlns="http://uniprot.org/uniprot">
    <accession>A9C0B3</accession>
    <name>A9C0B3_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="3">FAD dependent oxidoreductase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Daci_4048</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="4" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX36679.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_4048"/>
    <dbReference type="PRIDE" id="A9C0B3"/>
    <dbReference type="EnsemblBacteria" id="ABX36679">
        <property type="protein sequence ID" value="ABX36679"/>
        <property type="gene ID" value="Daci_4048"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_4048"/>
    <dbReference type="eggNOG" id="COG3380">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_036034_0_0_4"/>
    <dbReference type="OMA" id="VCGDWCL"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016491">
        <property type="term" value="F:oxidoreductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.50.50.60">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002937">
        <property type="entry name" value="Amino_oxidase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036188">
        <property type="entry name" value="FAD/NAD-bd_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01593">
        <property type="entry name" value="Amino_oxidase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51905">
        <property type="entry name" value="SSF51905"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Amino_oxidase" evidence="2">
        <location>
            <begin position="172"/>
            <end position="401"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="35"/>
            <end position="62"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="46"/>
            <end position="60"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF01593"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ABX36679.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="407" mass="44155" checksum="4A4DF1EC1E77C986" modified="2008-01-15" version="1">MVTGPGLLRRCGEAGRQGHASRNLPLPAKVCSMNASRAASKSTVKKKATKPPEASKARPKAGARRIAVIGAGMAGLACARTLMQAGHDVHVYERLPQVGGRMRSVNAAHGAFDIGAQYFTVRDKRFELALQTVPGLCRPWSVSTLRVLDAQGRQSSAAPAPTEAHWVATPDMQALPLAWAAPLWDADRLHLGQRVTRLERQPGPRGWSLHVETTEPTTQIRTGFDEVILALPAPQARQLLQTTPLALSLVQGMAAVEMAPCWALTLSYPMATEAGLSTLGPQWNAARTTHERAVWVARESSKPGRSQSERWTVLASPQWSQEHRADDAPRVLAKMQKAFGEITRIRIPPRHASVYLWPHAQTLSPLGRSHLRNKDAGLGLCGDWCIGRRVEDAFVSGLEMALALVAG</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="58" xmlns="http://uniprot.org/uniprot">
    <accession>A9C0K5</accession>
    <name>A9C0K5_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="1">4-carboxy-4-hydroxy-2-oxoadipate aldolase/oxaloacetate decarboxylase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Daci_4448</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="2" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX37078.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012206250.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_4448"/>
    <dbReference type="PRIDE" id="A9C0K5"/>
    <dbReference type="EnsemblBacteria" id="ABX37078">
        <property type="protein sequence ID" value="ABX37078"/>
        <property type="gene ID" value="Daci_4448"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_4448"/>
    <dbReference type="eggNOG" id="COG0684">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_072626_3_2_4"/>
    <dbReference type="OMA" id="VNVPVVC"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0047443">
        <property type="term" value="F:4-hydroxy-4-methyl-2-oxoglutarate aldolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd16841">
        <property type="entry name" value="RraA_family"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014165">
        <property type="entry name" value="LigK_PcmE"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005493">
        <property type="entry name" value="RraA/RraA-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036704">
        <property type="entry name" value="RraA/RraA-like_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03737">
        <property type="entry name" value="RraA-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF89562">
        <property type="entry name" value="SSF89562"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR02798">
        <property type="entry name" value="ligK_PcmE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ABX37078.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="227" mass="24144" checksum="FDA74DBAFF45B322" modified="2008-01-15" version="1">MYELGVVYRNIQRADRAAADGLAALGSATVHEAMGRVGLLKPYMRPIYAGQQVSGTAVTVLLQPGDNWMMHVAAEQIQPGDIVVAAVTSECTDGYFGDLLATSFQARGARALIIDAGVRDVKTLQEMNFPVWSRAISSKGTIKATLGSVNIPVVCAGMWVTPGDVIVADDDGVVCVPAAKAAETLAAAQKRESFEGEKRAKLASGVLGLDMYKMREPLEKAGLRYID</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="31" xmlns="http://uniprot.org/uniprot">
    <accession>A9C0P8</accession>
    <name>A9C0P8_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Daci_4492</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="2" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX37121.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012206291.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="PRIDE" id="A9C0P8"/>
    <dbReference type="EnsemblBacteria" id="ABX37121">
        <property type="protein sequence ID" value="ABX37121"/>
        <property type="gene ID" value="Daci_4492"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_4492"/>
    <dbReference type="HOGENOM" id="CLU_2733380_0_0_4"/>
    <dbReference type="OMA" id="DCMQQIS"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ABX37121.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="71" mass="7595" checksum="D1F8EB1838827392" modified="2008-01-15" version="1">MYYPIAEEELQVVQDCMQQISLLVDLGSGISAVQTTVGTEALLSFLIAQREALQGAVEAVQAREVMRGPAG</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2021-06-02" version="56" xmlns="http://uniprot.org/uniprot">
    <accession>A9C0V5</accession>
    <name>A9C0V5_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Transcriptional regulator, XRE family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_5790</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX38418.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012207587.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_5790"/>
    <dbReference type="EnsemblBacteria" id="ABX38418">
        <property type="protein sequence ID" value="ABX38418"/>
        <property type="gene ID" value="Daci_5790"/>
    </dbReference>
    <dbReference type="GeneID" id="60690155"/>
    <dbReference type="KEGG" id="dac:Daci_5790"/>
    <dbReference type="eggNOG" id="COG1813">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_066192_29_0_4"/>
    <dbReference type="OMA" id="NISICNI"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd00093">
        <property type="entry name" value="HTH_XRE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.260.40">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001387">
        <property type="entry name" value="Cro/C1-type_HTH"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010982">
        <property type="entry name" value="Lambda_DNA-bd_dom_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01381">
        <property type="entry name" value="HTH_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00530">
        <property type="entry name" value="HTH_XRE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47413">
        <property type="entry name" value="SSF47413"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50943">
        <property type="entry name" value="HTH_CROC1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HTH cro/C1-type" evidence="1">
        <location>
            <begin position="13"/>
            <end position="67"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS50943"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX38418.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="90" mass="9810" checksum="2831F3744B75C611" modified="2008-01-15" version="1">MSTRLVTSFGIAVRQAREAHGWSQERLAEHSDLNRSYVGEIERGRVIASLLTVEKLAVSLGVQPSALVMRGETVAHDQLVRGLRLAAIAC</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-01-19" version="50" xmlns="http://uniprot.org/uniprot">
    <accession>A9C132</accession>
    <name>A9C132_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Daci_5867</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="4" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX38495.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012207664.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_5867"/>
    <dbReference type="EnsemblBacteria" id="ABX38495">
        <property type="protein sequence ID" value="ABX38495"/>
        <property type="gene ID" value="Daci_5867"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_5867"/>
    <dbReference type="eggNOG" id="COG5478">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_072266_0_0_4"/>
    <dbReference type="OMA" id="DHTLREK"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0055085">
        <property type="term" value="P:transmembrane transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007251">
        <property type="entry name" value="Iron_permease_Fet4"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04120">
        <property type="entry name" value="Iron_permease"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="2" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="53"/>
            <end position="72"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="78"/>
            <end position="97"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="24"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ABX38495.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="173" mass="18816" checksum="86EA7CFA8B6FA7D2" modified="2008-01-15" version="1">MQSTSSTPGRRTPGDALGSMPETSSASYADHSRLLSAFDHFASRVTRWAGTPMAFCVALICVAVWAVAGPMFHFSENWQLVINTGTTIVTFLMVFLIQQSQNKDSVALHLKLNELLAANKIASNRMIGIEGLDEEQLQQVAAFYVNLAARARESGACKECHSIDEDDPARPGN</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="42" xmlns="http://uniprot.org/uniprot">
    <accession>A9C133</accession>
    <name>A9C133_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_5868</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX38496.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012207665.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_5868"/>
    <dbReference type="PRIDE" id="A9C133"/>
    <dbReference type="EnsemblBacteria" id="ABX38496">
        <property type="protein sequence ID" value="ABX38496"/>
        <property type="gene ID" value="Daci_5868"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_5868"/>
    <dbReference type="eggNOG" id="ENOG5032Z3P">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_143363_0_0_4"/>
    <dbReference type="OMA" id="WALIVLQ"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="7"/>
            <end position="24"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="54"/>
            <end position="73"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX38496.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="77" mass="8712" checksum="D4FA8694C6D63508" modified="2008-01-15" version="1">MPDIPDWLQWPAFLASILGAWWVGSRSAQRRNVGFWILMLSNVLWALWGWSSGAWALVTLQACLAITNIRGSIKAER</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="57" xmlns="http://uniprot.org/uniprot">
    <accession>A9C221</accession>
    <name>A9C221_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Antibiotic biosynthesis monooxygenase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_3019</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX35657.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012204863.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_3019"/>
    <dbReference type="PRIDE" id="A9C221"/>
    <dbReference type="EnsemblBacteria" id="ABX35657">
        <property type="protein sequence ID" value="ABX35657"/>
        <property type="gene ID" value="Daci_3019"/>
    </dbReference>
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    <dbReference type="OMA" id="YMREAFD"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004497">
        <property type="term" value="F:monooxygenase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007138">
        <property type="entry name" value="ABM_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011008">
        <property type="entry name" value="Dimeric_a/b-barrel"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03992">
        <property type="entry name" value="ABM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54909">
        <property type="entry name" value="SSF54909"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51725">
        <property type="entry name" value="ABM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0503">Monooxygenase</keyword>
    <keyword evidence="2" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="ABM" evidence="1">
        <location>
            <begin position="6"/>
            <end position="98"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS51725"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX35657.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="99" mass="11377" checksum="736FAF62E6B2A14E" modified="2008-01-15" version="1">MKTETIFNLAILEAKAGQQDQLRDALRALVPFTRQEAGCLDYTLFELADTPGTFYMRESFRDQAALDAHFSMPYFKAFEKRFDELLARPLQLVGLKEVP</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="43" xmlns="http://uniprot.org/uniprot">
    <accession>A9C244</accession>
    <name>A9C244_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Daci_3042</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
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                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="2" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX35680.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012204886.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_3042"/>
    <dbReference type="PRIDE" id="A9C244"/>
    <dbReference type="EnsemblBacteria" id="ABX35680">
        <property type="protein sequence ID" value="ABX35680"/>
        <property type="gene ID" value="Daci_3042"/>
    </dbReference>
    <dbReference type="GeneID" id="60687348"/>
    <dbReference type="KEGG" id="dac:Daci_3042"/>
    <dbReference type="eggNOG" id="COG2040">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_177836_0_0_4"/>
    <dbReference type="OMA" id="WNDAQRQ"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.1130">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR021250">
        <property type="entry name" value="DUF2789"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038086">
        <property type="entry name" value="DUF2789_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF10982">
        <property type="entry name" value="DUF2789"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ABX35680.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="85" mass="9500" checksum="63D76956A12AB118" modified="2008-01-15" version="1">MNNSVVRMSNLFLQLGLDASDQAIADFIRAHQLAADVDVVDAPYWSDAQRQFLAEQLKADASWSIVVDQLSESLHEDAVRQRAAR</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="50" xmlns="http://uniprot.org/uniprot">
    <accession>A9C2R4</accession>
    <name>A9C2R4_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">KfrA_N domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Daci_3781</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="4" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX36413.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012205607.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_3781"/>
    <dbReference type="PRIDE" id="A9C2R4"/>
    <dbReference type="EnsemblBacteria" id="ABX36413">
        <property type="protein sequence ID" value="ABX36413"/>
        <property type="gene ID" value="Daci_3781"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_3781"/>
    <dbReference type="eggNOG" id="COG1570">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_065092_0_0_4"/>
    <dbReference type="OMA" id="QYAGNER"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR021104">
        <property type="entry name" value="KfrA_DNA-bd_N"/>
    </dbReference>
    <dbReference type="Pfam" id="PF11740">
        <property type="entry name" value="KfrA_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="KfrA_N" evidence="2">
        <location>
            <begin position="11"/>
            <end position="132"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="103"/>
            <end position="166"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="294"/>
            <end position="327"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="105"/>
            <end position="126"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="134"/>
            <end position="155"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF11740"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ABX36413.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="327" mass="36296" checksum="CBFA05F92DB4C35A" modified="2008-01-15" version="1">MQKTSTRGVQEADVWAAADALIAQGLRPTIERVRQQIGRGSPNTVSPMLETWFATLGQRLGVAAGQGERLPSSVPDPVQRLAQQLWDAAQEAAMEAARAALQSREEAAQATQAELQEQQEQMARREASMQAQKEAMDQALQVAQAQSQDLSRRLDEMQQQLQDRDERLEEMRDALAEAARQREALQQKHGEEMQSAALERQRMAEQYAGNERHMLNEVDRARQELAAARKTATEQERKATTRLAELQGRYEKSEEEQLSLHSQLQTAQNAAALAQERAADLRSLLEAQQRLAAGGALPDAGTGLSLGRRGSLSAARRSMTRLKDRRG</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-01-19" version="38" xmlns="http://uniprot.org/uniprot">
    <accession>A9C2U9</accession>
    <name>A9C2U9_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_4122</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX36753.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_4122"/>
    <dbReference type="EnsemblBacteria" id="ABX36753">
        <property type="protein sequence ID" value="ABX36753"/>
        <property type="gene ID" value="Daci_4122"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_4122"/>
    <dbReference type="eggNOG" id="ENOG502ZP4J">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_2259146_0_0_4"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="29"/>
            <end position="59"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX36753.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="125" mass="13373" checksum="287BC66DB687AD87" modified="2008-01-15" version="1">MTPPIQLPTEPAPPGGLRFSGATAMQRVTPTEPFNPDPDARYLRECSTPGPVHEPEADGVPGGWLLMVLSALLLLALTGCSQAGAQEQPTDTAQELKRAAAGKWLCPGMHAEWISNTEVQCLKER</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="55" xmlns="http://uniprot.org/uniprot">
    <accession>A9C307</accession>
    <name>A9C307_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Thioredoxin-like_fold domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_4180</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX36811.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_4180"/>
    <dbReference type="PRIDE" id="A9C307"/>
    <dbReference type="EnsemblBacteria" id="ABX36811">
        <property type="protein sequence ID" value="ABX36811"/>
        <property type="gene ID" value="Daci_4180"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_4180"/>
    <dbReference type="eggNOG" id="COG1651">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_000288_47_6_4"/>
    <dbReference type="OMA" id="KQWINSH"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012336">
        <property type="entry name" value="Thioredoxin-like_fold"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036249">
        <property type="entry name" value="Thioredoxin-like_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13462">
        <property type="entry name" value="Thioredoxin_4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52833">
        <property type="entry name" value="SSF52833"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Thioredoxin-like_fold" evidence="1">
        <location>
            <begin position="56"/>
            <end position="201"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF13462"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX36811.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="245" mass="26616" checksum="8CE5C1B7453E9866" modified="2008-01-15" version="1">MPVQALRHRRSRKRWPWFLAAGLIALLLIWLVSRAPSEPASLAPAPVSTAQVAGPPWQMGNAQGRFTLTLYADLECPFCREYFPQLKRWVGANADVALQWQHQPLAAHEPAASAEARLAECAAESGGHVAFWQAIEWVYAHTRSDGLGLPEGLRYPGLNPAVEQCLASERPETLIRAQAEEATKGGVTATPSLRLHDRQTSQAILLQGPIEGDALLSAMDMLAAEDSVVSPTTEMPADVVGDMPR</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-01-19" version="31" xmlns="http://uniprot.org/uniprot">
    <accession>A9C329</accession>
    <name>A9C329_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Daci_4511</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="2" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX37140.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_4511"/>
    <dbReference type="EnsemblBacteria" id="ABX37140">
        <property type="protein sequence ID" value="ABX37140"/>
        <property type="gene ID" value="Daci_4511"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_4511"/>
    <dbReference type="eggNOG" id="COG1372">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="eggNOG" id="COG4104">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_1178690_0_0_4"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ABX37140.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="235" mass="25749" checksum="7E2BC6D5E36DBF2E" modified="2008-01-15" version="1">MGAGSVPLANAIKSSLDRRTVARALAKELQTTEPVLAAKTPSADVEAVLPKLNDATPKLVAEKDALVASPQTQPAVKTVQARRGEVNGSTSLVENNTVRILGAKGPNSGRNFEPENVGGIVRELNTNRVKVTERGIGVVEGHLARFGQDDSNNFIISRLKSISNGKMPAEQVDLNFYTHELREYVRYRMLGWEKGVPSSSDEAYRLWNNTHTATLKYYGLNEKMIPNPLYHKDAP</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="45" xmlns="http://uniprot.org/uniprot">
    <accession>A9C365</accession>
    <name>A9C365_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Daci_4547</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="2" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX37176.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012206346.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_4547"/>
    <dbReference type="PRIDE" id="A9C365"/>
    <dbReference type="EnsemblBacteria" id="ABX37176">
        <property type="protein sequence ID" value="ABX37176"/>
        <property type="gene ID" value="Daci_4547"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_4547"/>
    <dbReference type="eggNOG" id="ENOG5033WHI">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_1452134_0_0_4"/>
    <dbReference type="OMA" id="ELLHQWQ"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ABX37176.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="167" mass="19177" checksum="9548A86B7C7FBF59" modified="2008-01-15" version="1">MVFWSRPLDAQEQAFVRTHFGASLDALLPRLRLYQRRLGDTRRALSMNGGRIFMPRAFFTQSDPRQPLRLSHPQIAGIFAHELLHQWQRLQGMPVTRQAAWLQFKALCTRGDPYAYERCDDPRRMLQRFVHAQVEQQGQMWEDHVRACVAGQGDAAGALIAAHVRGA</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="65" xmlns="http://uniprot.org/uniprot">
    <accession>A9C369</accession>
    <name>A9C369_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Metallophosphoesterase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Daci_4551</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="4" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX37180.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012206350.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_4551"/>
    <dbReference type="PRIDE" id="A9C369"/>
    <dbReference type="EnsemblBacteria" id="ABX37180">
        <property type="protein sequence ID" value="ABX37180"/>
        <property type="gene ID" value="Daci_4551"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_4551"/>
    <dbReference type="eggNOG" id="COG1408">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_025443_5_1_4"/>
    <dbReference type="OMA" id="MQFGIEI"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016787">
        <property type="term" value="F:hydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.60.21.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004843">
        <property type="entry name" value="Calcineurin-like_PHP_ApaH"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029052">
        <property type="entry name" value="Metallo-depent_PP-like"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00149">
        <property type="entry name" value="Metallophos"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56300">
        <property type="entry name" value="SSF56300"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="29"/>
            <end position="49"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="61"/>
            <end position="82"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="102"/>
            <end position="127"/>
        </location>
    </feature>
    <feature type="domain" description="Metallophos" evidence="2">
        <location>
            <begin position="149"/>
            <end position="327"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF00149"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ABX37180.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="388" mass="41677" checksum="9444CE0604B46FEF" modified="2008-01-15" version="1">MVTLAALVIPLLALWLWWPVRLMPRRARLMAAVATAALGCTPALLLVLLREGTVEYRTLAYLQVPGGWVLALLLMLAVFIVLRDGLWALAAVARREDWKQRLHAPLLTAGALALAGLLSAWGVANALRPPEVHERTLRLPGLPTGLEGLRVAVLADIHASPINNARYVQTIVERTLEARPDLIVLPGDMVDGDVGSGRANVAPLAQLKARYGVWAAPGNHEYYSGYDAWMAEFRRLGLNLLENRMQLIDVQGARLALSGIGDPAYGRLSRQNTDPSVAEGVPPDIETVARQAKEAGAQYHLLLAHQPKTARDNAAHGVGLQLSGHTHGGLILGMDQWLVAPANDGFVRGEYEVGAMKLFVSAGAGLWAGFAVRLGVPASIDLLVLRGA</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="57" xmlns="http://uniprot.org/uniprot">
    <accession>A9C371</accession>
    <name>A9C371_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Extracellular solute-binding protein family 3</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Daci_4553</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="4" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX37182.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012206352.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_4553"/>
    <dbReference type="PRIDE" id="A9C371"/>
    <dbReference type="EnsemblBacteria" id="ABX37182">
        <property type="protein sequence ID" value="ABX37182"/>
        <property type="gene ID" value="Daci_4553"/>
    </dbReference>
    <dbReference type="GeneID" id="60688915"/>
    <dbReference type="KEGG" id="dac:Daci_4553"/>
    <dbReference type="eggNOG" id="COG0834">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_065316_0_0_4"/>
    <dbReference type="OMA" id="NPILANR"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001638">
        <property type="entry name" value="Solute-binding_3/MltF_N"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00497">
        <property type="entry name" value="SBP_bac_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00062">
        <property type="entry name" value="PBPb"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <feature type="domain" description="PBPb" evidence="2">
        <location>
            <begin position="16"/>
            <end position="236"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022729"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="SMART" id="SM00062"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ABX37182.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="247" mass="25913" checksum="A5EDD0676250389E" modified="2008-01-15" version="1">MNLSSQLLSTLAPLGRIRASINTGNPILARLQADGQPAGVSIDLARRLAQQLGLELELVVFDTAAKSVDAVTREEADFGFFAVDPVRGAGIGFTAPYVLIEGSYLVRQDSPLTDNAQVDRAGHTVVVGKGSAYDLYLSRELKHAQIERAVSSPAVVQTFVESTADVAAGVKQQLEADAARLPGLRLLPGRFMVIQQAMGLPKGRGDEALRVLAAFVEEAKACGFVAEALQRHGIQGAAVAPLAGASA</sequence>
</entry>
<entry dataset="Swiss-Prot" created="2009-04-14" modified="2022-08-03" version="75" xmlns="http://uniprot.org/uniprot">
    <accession>A9C3F6</accession>
    <name>SSUD_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Alkanesulfonate monooxygenase</fullName>
            <ecNumber evidence="1">1.14.14.5</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="1">FMNH2-dependent aliphatic sulfonate monooxygenase</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="1" type="primary">ssuD</name>
        <name type="ordered locus">Daci_4638</name>
    </gene>
    <organism>
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference key="1">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain>DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="1">Catalyzes the desulfonation of aliphatic sulfonates.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>an alkanesulfonate + FMNH2 + O2 = an aldehyde + FMN + 2 H(+) + H2O + sulfite</text>
            <dbReference type="Rhea" id="RHEA:23064"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:15379"/>
            <dbReference type="ChEBI" id="CHEBI:17359"/>
            <dbReference type="ChEBI" id="CHEBI:17478"/>
            <dbReference type="ChEBI" id="CHEBI:57618"/>
            <dbReference type="ChEBI" id="CHEBI:58210"/>
            <dbReference type="ChEBI" id="CHEBI:134249"/>
            <dbReference type="EC" id="1.14.14.5"/>
        </reaction>
    </comment>
    <comment type="similarity">
        <text evidence="1">Belongs to the SsuD family.</text>
    </comment>
    <dbReference type="EC" id="1.14.14.5" evidence="1"/>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX37267.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012206437.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A9C3F6"/>
    <dbReference type="SMR" id="A9C3F6"/>
    <dbReference type="STRING" id="398578.Daci_4638"/>
    <dbReference type="PRIDE" id="A9C3F6"/>
    <dbReference type="EnsemblBacteria" id="ABX37267">
        <property type="protein sequence ID" value="ABX37267"/>
        <property type="gene ID" value="Daci_4638"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_4638"/>
    <dbReference type="eggNOG" id="COG2141">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_027853_1_0_4"/>
    <dbReference type="OMA" id="NIFWFLP"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008726">
        <property type="term" value="F:alkanesulfonate monooxygenase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.20.20.30">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01229">
        <property type="entry name" value="Alkanesulf_monooxygen"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019911">
        <property type="entry name" value="Alkanesulphonate_mOase_FMN-dep"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011251">
        <property type="entry name" value="Luciferase-like_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036661">
        <property type="entry name" value="Luciferase-like_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00296">
        <property type="entry name" value="Bac_luciferase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51679">
        <property type="entry name" value="SSF51679"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR03565">
        <property type="entry name" value="alk_sulf_monoox"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword id="KW-0285">Flavoprotein</keyword>
    <keyword id="KW-0288">FMN</keyword>
    <keyword id="KW-0503">Monooxygenase</keyword>
    <keyword id="KW-0560">Oxidoreductase</keyword>
    <keyword id="KW-1185">Reference proteome</keyword>
    <feature type="chain" id="PRO_1000139615" description="Alkanesulfonate monooxygenase">
        <location>
            <begin position="1"/>
            <end position="386"/>
        </location>
    </feature>
    <evidence type="ECO:0000255" key="1">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01229"/>
        </source>
    </evidence>
    <sequence length="386" mass="42131" checksum="4B68D76E5861F1AB" modified="2008-01-15" version="1">MQVFWFIPTHGDSRYLGTAEGARPLSHDYVKQVAIAADSLGYEGVLIPTGRSCEDPWVVASSLIPVTRRLKFLVAVRPGLHQPSLAARMAASFDRLSGGRLLINLVTGGDRAELEGDGVFLDHAQRYEQSAEFIRIWREILERSHEGGTLDYEGEHLSVKGAKLLFPPLQKPYPPVYFGGSSEAAHDLAAEQVDAYLTWGEPPAEVAKKIADVREKAARHGRSVKFGIRLHVIVRETEDEAWADADRLISRLKDETVVQAQAAFARMDSEGQRRMAALHAGGSRRTRAELEISPNLWAGVGLVRGGAGTALVGDAQTVADRIKEYADLGIDTFVLSGYPHLEEAYRFAELVFPLLPLSVRDRLAGGVGGPLGETVANLYSPRASQS</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-01-19" version="27" xmlns="http://uniprot.org/uniprot">
    <accession>A9BLM1</accession>
    <name>A9BLM1_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Daci_3875</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="2" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX36506.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="ABX36506">
        <property type="protein sequence ID" value="ABX36506"/>
        <property type="gene ID" value="Daci_3875"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_3875"/>
    <dbReference type="HOGENOM" id="CLU_2600284_0_0_4"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ABX36506.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="79" mass="8851" checksum="9A2C5EFD2A932C47" modified="2008-01-15" version="1">MHSFLCLCFVGDGILNILIPIHVSQLLRNFVIGILAFKILVFHSLGDGICISFYSFIEVSRVLRDSFSSVLYRQVCPSA</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="70" xmlns="http://uniprot.org/uniprot">
    <accession>A9BLZ8</accession>
    <name>A9BLZ8_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="7">Histone family protein nucleoid-structuring protein H-NS</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ordered locus">Daci_4714</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="8" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Cytoplasm</location>
            <location evidence="1">Nucleoid</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the histone-like protein H-NS family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX37343.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012206513.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_4714"/>
    <dbReference type="PRIDE" id="A9BLZ8"/>
    <dbReference type="EnsemblBacteria" id="ABX37343">
        <property type="protein sequence ID" value="ABX37343"/>
        <property type="gene ID" value="Daci_4714"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_4714"/>
    <dbReference type="eggNOG" id="COG2916">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_117503_5_1_4"/>
    <dbReference type="OMA" id="HAKTDAI"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009295">
        <property type="term" value="C:nucleoid"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030527">
        <property type="term" value="F:structural constituent of chromatin"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006355">
        <property type="term" value="P:regulation of transcription, DNA-templated"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027444">
        <property type="entry name" value="H-NS_C_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001801">
        <property type="entry name" value="Histone_HNS"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00816">
        <property type="entry name" value="Histone_HNS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00528">
        <property type="entry name" value="HNS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="4" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HNS" evidence="6">
        <location>
            <begin position="59"/>
            <end position="98"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="5">
        <location>
            <begin position="49"/>
            <end position="98"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="5">
        <location>
            <begin position="50"/>
            <end position="68"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004453"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00010610"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022490"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="SMART" id="SM00528"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="ABX37343.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="98" mass="10797" checksum="FCA6C104A5D529FC" modified="2008-01-15" version="1">MTSDYKALLQQKAELEKKIDALIQHAKTDAIAEAKAMVQQYGLTKEDVFPSAKSKPDKAGKRSVGEPKFRNPETGATWTGRGKPPKWIEGKDRASLAI</sequence>
</entry>
<entry dataset="Swiss-Prot" created="2009-04-14" modified="2022-08-03" version="62" xmlns="http://uniprot.org/uniprot">
    <accession>A9BM59</accession>
    <name>PPNP_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Pyrimidine/purine nucleoside phosphorylase</fullName>
            <ecNumber evidence="1">2.4.2.1</ecNumber>
            <ecNumber evidence="1">2.4.2.2</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="1">Adenosine phosphorylase</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="1">Cytidine phosphorylase</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="1">Guanosine phosphorylase</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="1">Inosine phosphorylase</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="1">Thymidine phosphorylase</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="1">Uridine phosphorylase</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="1">Xanthosine phosphorylase</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="1" type="primary">ppnP</name>
        <name type="ordered locus">Daci_4775</name>
    </gene>
    <organism>
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference key="1">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain>DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="1">Catalyzes the phosphorolysis of diverse nucleosides, yielding D-ribose 1-phosphate and the respective free bases. Can use uridine, adenosine, guanosine, cytidine, thymidine, inosine and xanthosine as substrates. Also catalyzes the reverse reactions.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>a purine D-ribonucleoside + phosphate = a purine nucleobase + alpha-D-ribose 1-phosphate</text>
            <dbReference type="Rhea" id="RHEA:19805"/>
            <dbReference type="ChEBI" id="CHEBI:26386"/>
            <dbReference type="ChEBI" id="CHEBI:43474"/>
            <dbReference type="ChEBI" id="CHEBI:57720"/>
            <dbReference type="ChEBI" id="CHEBI:142355"/>
            <dbReference type="EC" id="2.4.2.1"/>
        </reaction>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>adenosine + phosphate = adenine + alpha-D-ribose 1-phosphate</text>
            <dbReference type="Rhea" id="RHEA:27642"/>
            <dbReference type="ChEBI" id="CHEBI:16335"/>
            <dbReference type="ChEBI" id="CHEBI:16708"/>
            <dbReference type="ChEBI" id="CHEBI:43474"/>
            <dbReference type="ChEBI" id="CHEBI:57720"/>
            <dbReference type="EC" id="2.4.2.1"/>
        </reaction>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>cytidine + phosphate = alpha-D-ribose 1-phosphate + cytosine</text>
            <dbReference type="Rhea" id="RHEA:52540"/>
            <dbReference type="ChEBI" id="CHEBI:16040"/>
            <dbReference type="ChEBI" id="CHEBI:17562"/>
            <dbReference type="ChEBI" id="CHEBI:43474"/>
            <dbReference type="ChEBI" id="CHEBI:57720"/>
            <dbReference type="EC" id="2.4.2.2"/>
        </reaction>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>guanosine + phosphate = alpha-D-ribose 1-phosphate + guanine</text>
            <dbReference type="Rhea" id="RHEA:13233"/>
            <dbReference type="ChEBI" id="CHEBI:16235"/>
            <dbReference type="ChEBI" id="CHEBI:16750"/>
            <dbReference type="ChEBI" id="CHEBI:43474"/>
            <dbReference type="ChEBI" id="CHEBI:57720"/>
            <dbReference type="EC" id="2.4.2.1"/>
        </reaction>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>inosine + phosphate = alpha-D-ribose 1-phosphate + hypoxanthine</text>
            <dbReference type="Rhea" id="RHEA:27646"/>
            <dbReference type="ChEBI" id="CHEBI:17368"/>
            <dbReference type="ChEBI" id="CHEBI:17596"/>
            <dbReference type="ChEBI" id="CHEBI:43474"/>
            <dbReference type="ChEBI" id="CHEBI:57720"/>
            <dbReference type="EC" id="2.4.2.1"/>
        </reaction>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>phosphate + thymidine = 2-deoxy-alpha-D-ribose 1-phosphate + thymine</text>
            <dbReference type="Rhea" id="RHEA:16037"/>
            <dbReference type="ChEBI" id="CHEBI:17748"/>
            <dbReference type="ChEBI" id="CHEBI:17821"/>
            <dbReference type="ChEBI" id="CHEBI:43474"/>
            <dbReference type="ChEBI" id="CHEBI:57259"/>
            <dbReference type="EC" id="2.4.2.2"/>
        </reaction>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>phosphate + uridine = alpha-D-ribose 1-phosphate + uracil</text>
            <dbReference type="Rhea" id="RHEA:24388"/>
            <dbReference type="ChEBI" id="CHEBI:16704"/>
            <dbReference type="ChEBI" id="CHEBI:17568"/>
            <dbReference type="ChEBI" id="CHEBI:43474"/>
            <dbReference type="ChEBI" id="CHEBI:57720"/>
            <dbReference type="EC" id="2.4.2.2"/>
        </reaction>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>phosphate + xanthosine = alpha-D-ribose 1-phosphate + xanthine</text>
            <dbReference type="Rhea" id="RHEA:27638"/>
            <dbReference type="ChEBI" id="CHEBI:17712"/>
            <dbReference type="ChEBI" id="CHEBI:18107"/>
            <dbReference type="ChEBI" id="CHEBI:43474"/>
            <dbReference type="ChEBI" id="CHEBI:57720"/>
            <dbReference type="EC" id="2.4.2.1"/>
        </reaction>
    </comment>
    <comment type="similarity">
        <text evidence="1">Belongs to the nucleoside phosphorylase PpnP family.</text>
    </comment>
    <dbReference type="EC" id="2.4.2.1" evidence="1"/>
    <dbReference type="EC" id="2.4.2.2" evidence="1"/>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX37404.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012206574.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A9BM59"/>
    <dbReference type="SMR" id="A9BM59"/>
    <dbReference type="STRING" id="398578.Daci_4775"/>
    <dbReference type="PRIDE" id="A9BM59"/>
    <dbReference type="EnsemblBacteria" id="ABX37404">
        <property type="protein sequence ID" value="ABX37404"/>
        <property type="gene ID" value="Daci_4775"/>
    </dbReference>
    <dbReference type="GeneID" id="60689113"/>
    <dbReference type="KEGG" id="dac:Daci_4775"/>
    <dbReference type="eggNOG" id="COG3123">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_157874_1_0_4"/>
    <dbReference type="OMA" id="YHYICHF"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0047975">
        <property type="term" value="F:guanosine phosphorylase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004731">
        <property type="term" value="F:purine-nucleoside phosphorylase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016154">
        <property type="term" value="F:pyrimidine-nucleoside phosphorylase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009032">
        <property type="term" value="F:thymidine phosphorylase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004850">
        <property type="term" value="F:uridine phosphorylase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.120.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01537">
        <property type="entry name" value="Nucleos_phosphorylase_PpnP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009664">
        <property type="entry name" value="Ppnp"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014710">
        <property type="entry name" value="RmlC-like_jellyroll"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011051">
        <property type="entry name" value="RmlC_Cupin_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR36540">
        <property type="entry name" value="PTHR36540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF06865">
        <property type="entry name" value="Ppnp"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51182">
        <property type="entry name" value="SSF51182"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword id="KW-0328">Glycosyltransferase</keyword>
    <keyword id="KW-1185">Reference proteome</keyword>
    <keyword id="KW-0808">Transferase</keyword>
    <feature type="chain" id="PRO_1000198655" description="Pyrimidine/purine nucleoside phosphorylase">
        <location>
            <begin position="1"/>
            <end position="105"/>
        </location>
    </feature>
    <evidence type="ECO:0000255" key="1">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01537"/>
        </source>
    </evidence>
    <sequence length="105" mass="11298" checksum="F5A9164052BAC792" modified="2008-01-15" version="1">MTTETISGITLTTKANVYFDGKCISHGFTLADGTKKSAGVVLPSQLTFGTAAAEIMECVAGSCEYKLDGSDQWLTSKAGESFQVPANSKFDIRVTEAYHYICHYA</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="62" xmlns="http://uniprot.org/uniprot">
    <accession>A9BM62</accession>
    <name>A9BM62_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Beta-lactamase domain protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Daci_4778</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="4" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX37407.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012206577.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_4778"/>
    <dbReference type="PRIDE" id="A9BM62"/>
    <dbReference type="EnsemblBacteria" id="ABX37407">
        <property type="protein sequence ID" value="ABX37407"/>
        <property type="gene ID" value="Daci_4778"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_4778"/>
    <dbReference type="eggNOG" id="COG0491">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_054962_2_0_4"/>
    <dbReference type="OMA" id="KGEMKWP"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.60.15.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001279">
        <property type="entry name" value="Metallo-B-lactamas"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036866">
        <property type="entry name" value="RibonucZ/Hydroxyglut_hydro"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00753">
        <property type="entry name" value="Lactamase_B"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00849">
        <property type="entry name" value="Lactamase_B"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56281">
        <property type="entry name" value="SSF56281"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="1">
        <location>
            <begin position="1"/>
            <end position="20"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5002735607" evidence="1">
        <location>
            <begin position="21"/>
            <end position="289"/>
        </location>
    </feature>
    <feature type="domain" description="Lactamase_B" evidence="2">
        <location>
            <begin position="39"/>
            <end position="224"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="SMART" id="SM00849"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ABX37407.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="289" mass="30671" checksum="A8AA557B6E23C74E" modified="2008-01-15" version="1">MLRTTVLSLTLALSAGLSHAQAPAPLQMKVYQADEHSFAVTSTLITGAKEAVVVDSGFTRADGLRIAANVLDSGKQLTTILISNADPDYYFGAEVLKNLFPQAKVVATPAVREKIESKLQGKLAFWGPKMGANAPSHPVLPEALQGNTVTVDGQTLELRGTTGPLAHRPYVWVPALQAIVGNVGVFGNLHVWTADTQKSAERKAWLAQLDEMQALKPAVVVPGHMQAGTAMDASAIAYTRDYLQRFEAAAAKAANSAELIGAMKQAYPQAGMALSLDIGAKVNKGEMPW</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="78" xmlns="http://uniprot.org/uniprot">
    <accession>A9BM84</accession>
    <name>A9BM84_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="6">Binding-protein-dependent transport systems inner membrane component</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ordered locus">Daci_4800</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="7" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="4">Cell membrane</location>
            <topology evidence="4">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="4">Belongs to the binding-protein-dependent transport system permease family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX37429.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012206599.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_4800"/>
    <dbReference type="PRIDE" id="A9BM84"/>
    <dbReference type="EnsemblBacteria" id="ABX37429">
        <property type="protein sequence ID" value="ABX37429"/>
        <property type="gene ID" value="Daci_4800"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_4800"/>
    <dbReference type="eggNOG" id="COG1178">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_021838_1_0_4"/>
    <dbReference type="OMA" id="FTFDPIY"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0055085">
        <property type="term" value="P:transmembrane transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd06261">
        <property type="entry name" value="TM_PBP2"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.3720.10">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000515">
        <property type="entry name" value="MetI-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035906">
        <property type="entry name" value="MetI-like_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00528">
        <property type="entry name" value="BPD_transp_1"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF161098">
        <property type="entry name" value="SSF161098"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50928">
        <property type="entry name" value="ABC_TM1"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3 4" id="KW-0472">Membrane</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1 4" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="2 4" id="KW-1133">Transmembrane helix</keyword>
    <keyword evidence="4" id="KW-0813">Transport</keyword>
    <feature type="transmembrane region" description="Helical" evidence="4">
        <location>
            <begin position="28"/>
            <end position="54"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="4">
        <location>
            <begin position="83"/>
            <end position="105"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="4">
        <location>
            <begin position="112"/>
            <end position="138"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="4">
        <location>
            <begin position="158"/>
            <end position="185"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="4">
        <location>
            <begin position="206"/>
            <end position="228"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="4">
        <location>
            <begin position="263"/>
            <end position="283"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="4">
        <location>
            <begin position="312"/>
            <end position="337"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="4">
        <location>
            <begin position="369"/>
            <end position="392"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="4">
        <location>
            <begin position="404"/>
            <end position="424"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="4">
        <location>
            <begin position="430"/>
            <end position="450"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="4">
        <location>
            <begin position="489"/>
            <end position="511"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="4">
        <location>
            <begin position="543"/>
            <end position="562"/>
        </location>
    </feature>
    <feature type="domain" description="ABC transmembrane type-1" evidence="5">
        <location>
            <begin position="79"/>
            <end position="278"/>
        </location>
    </feature>
    <feature type="domain" description="ABC transmembrane type-1" evidence="5">
        <location>
            <begin position="366"/>
            <end position="563"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="RuleBase" id="RU363032"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="PROSITE" id="PS50928"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="ABX37429.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="579" mass="62409" checksum="42334150CD3F6ABE" modified="2008-01-15" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="74" xmlns="http://uniprot.org/uniprot">
    <accession>A9BMA1</accession>
    <name>A9BMA1_DELAS</name>
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        <submittedName>
            <fullName evidence="6">Acetyl-CoA acetyltransferase</fullName>
            <ecNumber evidence="6">2.3.1.16</ecNumber>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ordered locus">Daci_4817</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
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        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
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                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
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            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="7" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1 3">Belongs to the thiolase-like superfamily. Thiolase family.</text>
    </comment>
    <dbReference type="EC" id="2.3.1.16" evidence="6"/>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX37446.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012206616.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_4817"/>
    <dbReference type="PRIDE" id="A9BMA1"/>
    <dbReference type="EnsemblBacteria" id="ABX37446">
        <property type="protein sequence ID" value="ABX37446"/>
        <property type="gene ID" value="Daci_4817"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_4817"/>
    <dbReference type="eggNOG" id="COG0183">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_031026_2_3_4"/>
    <dbReference type="OMA" id="YAYESHQ"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003988">
        <property type="term" value="F:acetyl-CoA C-acyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="CDD" id="cd00751">
        <property type="entry name" value="thiolase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.47.10">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002155">
        <property type="entry name" value="Thiolase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016039">
        <property type="entry name" value="Thiolase-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020617">
        <property type="entry name" value="Thiolase_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020613">
        <property type="entry name" value="Thiolase_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020616">
        <property type="entry name" value="Thiolase_N"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02803">
        <property type="entry name" value="Thiolase_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00108">
        <property type="entry name" value="Thiolase_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF000429">
        <property type="entry name" value="Ac-CoA_Ac_transf"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53901">
        <property type="entry name" value="SSF53901"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01930">
        <property type="entry name" value="AcCoA-C-Actrans"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00737">
        <property type="entry name" value="THIOLASE_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3 6" id="KW-0012">Acyltransferase</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 6" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Thiolase_N" evidence="4">
        <location>
            <begin position="5"/>
            <end position="263"/>
        </location>
    </feature>
    <feature type="domain" description="Thiolase_C" evidence="5">
        <location>
            <begin position="272"/>
            <end position="393"/>
        </location>
    </feature>
    <feature type="active site" description="Acyl-thioester intermediate" evidence="2">
        <location>
            <position position="89"/>
        </location>
    </feature>
    <feature type="active site" description="Proton acceptor" evidence="2">
        <location>
            <position position="350"/>
        </location>
    </feature>
    <feature type="active site" description="Proton acceptor" evidence="2">
        <location>
            <position position="380"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00010982"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="PIRSR" id="PIRSR000429-1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="RuleBase" id="RU003557"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="Pfam" id="PF00108"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="Pfam" id="PF02803"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="ABX37446.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="394" mass="40971" checksum="4D54E692D9997B79" modified="2008-01-15" version="1">MAQAYIVAATRTAGGKRGGKLSGWHPADLAAQVLDELVRRSQADPAQVEDVIMGCVSQVGQQATNVARNAVLASSLPESVPGTTVDRQCGSSQQALHFAAQAVMSGSMDMVIAAGVESMSRVPMGTPNALPAKAGLGVYMSPAMQQRYPGVEFSQFMGAEMMAGKYGLAKDQLDAYALQSHERAVQAAREGRFDREILAVQARSAEGGAEGEGQPHTVDEGIRFNATLEGIAGVKTIREGGCVTAATASQICDGASGVMVVSERGLKALGVQPLARIHHMSLLGHDPVIMLEAPIPATQAALKKAGMRISDIDLYEVNEAFAPVPLAWLQATGADPARLNVNGGAIALGHPLGASGTKLMATLIHALHARGGRYGLQTMCEGGGMANVTIIERL</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-01-19" version="64" xmlns="http://uniprot.org/uniprot">
    <accession>A9BMA4</accession>
    <name>A9BMA4_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="7">Inner-membrane translocator</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ordered locus">Daci_4820</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="8" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX37449.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012206619.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_4820"/>
    <dbReference type="EnsemblBacteria" id="ABX37449">
        <property type="protein sequence ID" value="ABX37449"/>
        <property type="gene ID" value="Daci_4820"/>
    </dbReference>
    <dbReference type="GeneID" id="60689158"/>
    <dbReference type="KEGG" id="dac:Daci_4820"/>
    <dbReference type="eggNOG" id="COG0559">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_039929_1_1_4"/>
    <dbReference type="OMA" id="LIWDFTI"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0022857">
        <property type="term" value="F:transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001851">
        <property type="entry name" value="ABC_transp_permease"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02653">
        <property type="entry name" value="BPD_transp_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="5 6" id="KW-0472">Membrane</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 6" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="4 6" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="6"/>
            <end position="28"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="35"/>
            <end position="54"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="60"/>
            <end position="83"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="95"/>
            <end position="117"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="137"/>
            <end position="157"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="186"/>
            <end position="209"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="215"/>
            <end position="232"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="239"/>
            <end position="257"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="263"/>
            <end position="280"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="ABX37449.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="290" mass="30475" checksum="E5C071AF4CD45099" modified="2008-01-15" version="1">MDAFIHQLLAGLATGGIYATVALALVMIYQATHHINFAQGEMAMFSTFIAWALLQAGLPYWWAFLATVALSFVLGAAVEFAIIRPMHKAADLAQVVVFIGLLIVFHSLAGWIFGYTIKEFPSPFPADAWYGSALMSAHEVGTIFVALAIVALLFAFFRLTPLGLAMRAAAQNPASSRLVGISVGRMLMLGWGLAGAIGAVAGMMVAPVVFLDPHMMSGVLLYAFAGALLGGIDSPAGAVLGGFIVGVLENLVGSYVVGTELKLSVALVLIVGVLIVRPAGLMGRKVVRRV</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="71" xmlns="http://uniprot.org/uniprot">
    <accession>A9BMW4</accession>
    <name>A9BMW4_DELAS</name>
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        <submittedName>
            <fullName evidence="2">Alcohol dehydrogenase zinc-binding domain protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_5030</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX37659.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012206829.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_5030"/>
    <dbReference type="PRIDE" id="A9BMW4"/>
    <dbReference type="EnsemblBacteria" id="ABX37659">
        <property type="protein sequence ID" value="ABX37659"/>
        <property type="gene ID" value="Daci_5030"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_5030"/>
    <dbReference type="eggNOG" id="COG0604">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_026673_3_4_4"/>
    <dbReference type="OMA" id="FWGEFAR"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016491">
        <property type="term" value="F:oxidoreductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008270">
        <property type="term" value="F:zinc ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013149">
        <property type="entry name" value="ADH-like_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013154">
        <property type="entry name" value="ADH_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011032">
        <property type="entry name" value="GroES-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036291">
        <property type="entry name" value="NAD(P)-bd_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020843">
        <property type="entry name" value="PKS_ER"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002364">
        <property type="entry name" value="Quin_OxRdtase/zeta-crystal_CS"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08240">
        <property type="entry name" value="ADH_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00107">
        <property type="entry name" value="ADH_zinc_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00829">
        <property type="entry name" value="PKS_ER"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50129">
        <property type="entry name" value="SSF50129"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51735">
        <property type="entry name" value="SSF51735"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01162">
        <property type="entry name" value="QOR_ZETA_CRYSTAL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="PKS_ER" evidence="1">
        <location>
            <begin position="11"/>
            <end position="322"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="SMART" id="SM00829"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX37659.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="326" mass="34267" checksum="56B55E746F7E59CC" modified="2008-01-15" version="1">MHAWLCTTPTGVDQLQWTQLPTPTPGPGQVLLEVKAASLNFPDLLIVQNKYQMKPELPFVPGSEYAGVVQAVGEGVSHLAVGQRVACLSGTGGFGTHTLAPAALCMPLPDGFSFVDAAAFIMTYATSHHALIDRGQLRAGETVLVLGAAGGVGTAAIQIAKAAGARVIAAASTDEKCALCKAQGADATINYSQGDLRAAIKEATDGKGPDVVYDPVGGDFAEPAFRSIAWRGRYLIVGFAAGPIPALPLNLPLLKGASLVGVFWGEFSRREPKANAAMMQELAQWYGQGKIKPVIDRTMPMAELHAAYARMGSRQVQGKLVMVNEQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="50" xmlns="http://uniprot.org/uniprot">
    <accession>A9BMZ1</accession>
    <name>A9BMZ1_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">PepSY-associated TM helix domain protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_5057</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX37686.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012206856.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_5057"/>
    <dbReference type="PRIDE" id="A9BMZ1"/>
    <dbReference type="EnsemblBacteria" id="ABX37686">
        <property type="protein sequence ID" value="ABX37686"/>
        <property type="gene ID" value="Daci_5057"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_5057"/>
    <dbReference type="eggNOG" id="COG3295">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_114004_0_0_4"/>
    <dbReference type="OMA" id="GFTLNHA"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR032307">
        <property type="entry name" value="PepSY_TM-like_2"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR40115">
        <property type="entry name" value="PTHR40115"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF16357">
        <property type="entry name" value="PepSY_TM_like_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="21"/>
            <end position="43"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="159"/>
            <end position="182"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="191"/>
            <end position="211"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX37686.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="212" mass="23855" checksum="E060F67EF9589FC8" modified="2008-01-15" version="1">MTSPKPDPRRRSYWLKTLHEWHWVSSALCLIGMLLFAVTGFTLNHAGQIESRPRIVRGEAALPDALRVQLVQQQASQPRDRAPVPAPFADWVRGQWGLEAEGREAEWTADELYVSLPRPGGDAWVRVALADGEAEYERTDRGWIAYLNDLHKGRNTGAAWSWFIDIFAAACLVFTVTGLFILKMHAGNRPFTWPMVGMGLVIPMLLALLLIH</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="50" xmlns="http://uniprot.org/uniprot">
    <accession>A9BNR3</accession>
    <name>A9BNR3_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Putative exported alkaline phosphatase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Daci_5329</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="2" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX37958.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012207127.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_5329"/>
    <dbReference type="PRIDE" id="A9BNR3"/>
    <dbReference type="EnsemblBacteria" id="ABX37958">
        <property type="protein sequence ID" value="ABX37958"/>
        <property type="gene ID" value="Daci_5329"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_5329"/>
    <dbReference type="eggNOG" id="COG3211">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_018525_0_0_4"/>
    <dbReference type="OMA" id="QRTALMG"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008557">
        <property type="entry name" value="PhoX"/>
    </dbReference>
    <dbReference type="Pfam" id="PF05787">
        <property type="entry name" value="DUF839"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ABX37958.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="650" mass="69023" checksum="72B9866B8C4F4E78" modified="2008-01-15" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="77" xmlns="http://uniprot.org/uniprot">
    <accession>A9BNS0</accession>
    <name>A9BNS0_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="11">DEAD/DEAH box helicase domain protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="11" type="ordered locus">Daci_5336</name>
    </gene>
    <organism evidence="11 12">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="11 12" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="12">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="12" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="12">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="6">Belongs to the DEAD box helicase family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX37965.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_5336"/>
    <dbReference type="PRIDE" id="A9BNS0"/>
    <dbReference type="EnsemblBacteria" id="ABX37965">
        <property type="protein sequence ID" value="ABX37965"/>
        <property type="gene ID" value="Daci_5336"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_5336"/>
    <dbReference type="eggNOG" id="COG0513">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_003041_4_0_4"/>
    <dbReference type="OMA" id="YDIELYQ"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016787">
        <property type="term" value="F:hydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003676">
        <property type="term" value="F:nucleic acid binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003724">
        <property type="term" value="F:RNA helicase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011545">
        <property type="entry name" value="DEAD/DEAH_box_helicase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014001">
        <property type="entry name" value="Helicase_ATP-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001650">
        <property type="entry name" value="Helicase_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000629">
        <property type="entry name" value="RNA-helicase_DEAD-box_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014014">
        <property type="entry name" value="RNA_helicase_DEAD_Q_motif"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00270">
        <property type="entry name" value="DEAD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00271">
        <property type="entry name" value="Helicase_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00487">
        <property type="entry name" value="DEXDc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00490">
        <property type="entry name" value="HELICc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00039">
        <property type="entry name" value="DEAD_ATP_HELICASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51192">
        <property type="entry name" value="HELICASE_ATP_BIND_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51194">
        <property type="entry name" value="HELICASE_CTER"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51195">
        <property type="entry name" value="Q_MOTIF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4 6" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="3 6 11" id="KW-0347">Helicase</keyword>
    <keyword evidence="2 6" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="1 6" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="12" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Q_MOTIF" evidence="10">
        <location>
            <begin position="88"/>
            <end position="116"/>
        </location>
    </feature>
    <feature type="domain" description="Helicase ATP-binding" evidence="8">
        <location>
            <begin position="124"/>
            <end position="336"/>
        </location>
    </feature>
    <feature type="domain" description="Helicase C-terminal" evidence="9">
        <location>
            <begin position="368"/>
            <end position="517"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="7">
        <location>
            <begin position="175"/>
            <end position="197"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="7">
        <location>
            <begin position="507"/>
            <end position="707"/>
        </location>
    </feature>
    <feature type="short sequence motif" description="Q motif" evidence="5">
        <location>
            <begin position="88"/>
            <end position="116"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="7">
        <location>
            <begin position="553"/>
            <end position="582"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="7">
        <location>
            <begin position="642"/>
            <end position="656"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022806"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00552"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="RuleBase" id="RU000492"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="PROSITE" id="PS51192"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="9">
        <source>
            <dbReference type="PROSITE" id="PS51194"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="10">
        <source>
            <dbReference type="PROSITE" id="PS51195"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="EMBL" id="ABX37965.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="707" mass="75266" checksum="84D5270D7BBC0B0D" modified="2008-01-15" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="63" xmlns="http://uniprot.org/uniprot">
    <accession>A9BNY2</accession>
    <name>A9BNY2_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="1">TatD-related deoxyribonuclease</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Daci_5398</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="2" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX38027.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_5398"/>
    <dbReference type="PRIDE" id="A9BNY2"/>
    <dbReference type="EnsemblBacteria" id="ABX38027">
        <property type="protein sequence ID" value="ABX38027"/>
        <property type="gene ID" value="Daci_5398"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_5398"/>
    <dbReference type="eggNOG" id="COG0084">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_031506_0_1_4"/>
    <dbReference type="OMA" id="CHLDAGE"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016788">
        <property type="term" value="F:hydrolase activity, acting on ester bonds"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd01310">
        <property type="entry name" value="TatD_DNAse"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018228">
        <property type="entry name" value="DNase_TatD-rel_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR032466">
        <property type="entry name" value="Metal_Hydrolase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001130">
        <property type="entry name" value="TatD-like"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01026">
        <property type="entry name" value="TatD_DNase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF005902">
        <property type="entry name" value="DNase_TatD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51556">
        <property type="entry name" value="SSF51556"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01091">
        <property type="entry name" value="TATD_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ABX38027.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="293" mass="31518" checksum="D0A1456ECD6C16BE" modified="2008-01-15" version="1">MVFALPASGGPGAGRWHDAAMPAWIDTHCHLDAPEFDADRDAVRAQAAEAGVAHLVIPAVAREHWDAVVALARRHGDSYALGIHPLYTPNAREQDIAALRETLARLRGDAQLVAVGEIGLDFFVPGLDADRQIWFYEQQIALAREFDLPVILHVRKSSDRLLKTLRARPVAGGIAHAFNGSVQQAQAFIDLGFKLGFGGAVTYDRALKLRELAAALPLDALVLETDAPDIPPHWLYTTAGQRARGQAQGRNTPAELARIADVIAQLRGITPQALAEATGRNARAALRGLPAMA</sequence>
</entry>
<entry dataset="Swiss-Prot" created="2009-03-24" modified="2022-08-03" version="78" xmlns="http://uniprot.org/uniprot">
    <accession>A9BP19</accession>
    <name>PTH_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Peptidyl-tRNA hydrolase</fullName>
            <shortName evidence="1">PTH</shortName>
            <ecNumber evidence="1">3.1.1.29</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="1" type="primary">pth</name>
        <name type="ordered locus">Daci_5435</name>
    </gene>
    <organism>
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference key="1">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain>DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="1">The natural substrate for this enzyme may be peptidyl-tRNAs which drop off the ribosome during protein synthesis.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>an N-acyl-L-alpha-aminoacyl-tRNA + H2O = a tRNA + an N-acyl-L-amino acid + H(+)</text>
            <dbReference type="Rhea" id="RHEA:54448"/>
            <dbReference type="Rhea" id="RHEA-COMP:10123"/>
            <dbReference type="Rhea" id="RHEA-COMP:13883"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:59874"/>
            <dbReference type="ChEBI" id="CHEBI:78442"/>
            <dbReference type="ChEBI" id="CHEBI:138191"/>
            <dbReference type="EC" id="3.1.1.29"/>
        </reaction>
    </comment>
    <comment type="subunit">
        <text evidence="1">Monomer.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="1">Belongs to the PTH family.</text>
    </comment>
    <dbReference type="EC" id="3.1.1.29" evidence="1"/>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX38064.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012207233.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A9BP19"/>
    <dbReference type="SMR" id="A9BP19"/>
    <dbReference type="STRING" id="398578.Daci_5435"/>
    <dbReference type="PRIDE" id="A9BP19"/>
    <dbReference type="EnsemblBacteria" id="ABX38064">
        <property type="protein sequence ID" value="ABX38064"/>
        <property type="gene ID" value="Daci_5435"/>
    </dbReference>
    <dbReference type="GeneID" id="60689786"/>
    <dbReference type="KEGG" id="dac:Daci_5435"/>
    <dbReference type="eggNOG" id="COG0193">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_062456_3_1_4"/>
    <dbReference type="OMA" id="HVLSKFH"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004045">
        <property type="term" value="F:aminoacyl-tRNA hydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006412">
        <property type="term" value="P:translation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd00462">
        <property type="entry name" value="PTH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.1470">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00083">
        <property type="entry name" value="Pept_tRNA_hydro_bact"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001328">
        <property type="entry name" value="Pept_tRNA_hydro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018171">
        <property type="entry name" value="Pept_tRNA_hydro_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036416">
        <property type="entry name" value="Pept_tRNA_hydro_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR17224">
        <property type="entry name" value="PTHR17224"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01195">
        <property type="entry name" value="Pept_tRNA_hydro"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53178">
        <property type="entry name" value="SSF53178"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00447">
        <property type="entry name" value="pth"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01196">
        <property type="entry name" value="PEPT_TRNA_HYDROL_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword id="KW-0963">Cytoplasm</keyword>
    <keyword id="KW-0378">Hydrolase</keyword>
    <keyword id="KW-1185">Reference proteome</keyword>
    <feature type="chain" id="PRO_1000092935" description="Peptidyl-tRNA hydrolase">
        <location>
            <begin position="1"/>
            <end position="207"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="187"/>
            <end position="207"/>
        </location>
    </feature>
    <evidence type="ECO:0000255" key="1">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00083"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <sequence length="207" mass="23056" checksum="CDFF3B0C93286D33" modified="2008-01-15" version="1">MIKLFVGLGNPGPEYEDTRHNAGFWWIDALARELKVQLVPERSYFGLMARASVRGENVWLLQPQTFMNLSGKSVGALARFFKIQPEEVLVVHDELDFEPGQVKLKRGGSHGGHNGLRDIHAQLGSADYWRLRIGIGHPGHKAEVANWVLKKPAPDQRQLIEDSIAHSLKAWPELQAGNMDKATLLIHTTKPPRPKPARPATAESDKG</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="89" xmlns="http://uniprot.org/uniprot">
    <accession>A9BP75</accession>
    <name>A9BP75_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">Dephospho-CoA kinase</fullName>
            <ecNumber evidence="2">2.7.1.24</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="2">Dephosphocoenzyme A kinase</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="2" type="primary">coaE</name>
        <name evidence="4" type="ordered locus">Daci_5491</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="5" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="2">Catalyzes the phosphorylation of the 3'-hydroxyl group of dephosphocoenzyme A to form coenzyme A.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="2">
            <text>3'-dephospho-CoA + ATP = ADP + CoA + H(+)</text>
            <dbReference type="Rhea" id="RHEA:18245"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:57287"/>
            <dbReference type="ChEBI" id="CHEBI:57328"/>
            <dbReference type="ChEBI" id="CHEBI:456216"/>
            <dbReference type="EC" id="2.7.1.24"/>
        </reaction>
    </comment>
    <comment type="pathway">
        <text evidence="2">Cofactor biosynthesis; coenzyme A biosynthesis; CoA from (R)-pantothenate: step 5/5.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="2">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="1 2">Belongs to the CoaE family.</text>
    </comment>
    <dbReference type="EC" id="2.7.1.24" evidence="2"/>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX38120.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012207289.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_5491"/>
    <dbReference type="PRIDE" id="A9BP75"/>
    <dbReference type="EnsemblBacteria" id="ABX38120">
        <property type="protein sequence ID" value="ABX38120"/>
        <property type="gene ID" value="Daci_5491"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_5491"/>
    <dbReference type="eggNOG" id="COG0237">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_057180_1_2_4"/>
    <dbReference type="OMA" id="QMDIEQK"/>
    <dbReference type="UniPathway" id="UPA00241">
        <property type="reaction ID" value="UER00356"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004140">
        <property type="term" value="F:dephospho-CoA kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015937">
        <property type="term" value="P:coenzyme A biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016310">
        <property type="term" value="P:phosphorylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00376">
        <property type="entry name" value="Dephospho_CoA_kinase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001977">
        <property type="entry name" value="Depp_CoAkinase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01121">
        <property type="entry name" value="CoaE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00152">
        <property type="entry name" value="TIGR00152"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51219">
        <property type="entry name" value="DPCK"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="2" id="KW-0173">Coenzyme A biosynthesis</keyword>
    <keyword evidence="2" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="2 4" id="KW-0418">Kinase</keyword>
    <keyword evidence="2" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 4" id="KW-0808">Transferase</keyword>
    <feature type="region of interest" description="Disordered" evidence="3">
        <location>
            <begin position="1"/>
            <end position="20"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Pro residues" evidence="3">
        <location>
            <begin position="1"/>
            <end position="15"/>
        </location>
    </feature>
    <feature type="binding site" evidence="2">
        <location>
            <begin position="25"/>
            <end position="30"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00009018"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00376"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="ABX38120.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="214" mass="22789" checksum="41218C8AE4964664" modified="2008-01-15" version="1">MESSNAPPPRPHPRPFRLGLTGGIGSGKSTVAAQLALRGASIIDADQISRSLTAPAGAALPEIARSFGPELIDANGALDRARMRELVFQQPAARQQLEAIIHPLVARQTALEVQQATDAGCALIVHDIPLLVESGRWPALLDAVLVVDCRTETQIARVMARNGLPRDAVQAIIAAQATRAARLAAADWVLYNDEAMTIEALHACTDRISAWFGL</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2021-06-02" version="53" xmlns="http://uniprot.org/uniprot">
    <accession>A9BP89</accession>
    <name>A9BP89_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="2 3">Biotin carboxyl carrier protein of acetyl-CoA carboxylase</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="5" type="ordered locus">Daci_0006</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="6" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="1 3">This protein is a component of the acetyl coenzyme A carboxylase complex; first, biotin carboxylase catalyzes the carboxylation of the carrier protein and then the transcarboxylase transfers the carboxyl group to form malonyl-CoA.</text>
    </comment>
    <comment type="pathway">
        <text evidence="3">Lipid metabolism; fatty acid biosynthesis.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX32653.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012201946.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_0006"/>
    <dbReference type="EnsemblBacteria" id="ABX32653">
        <property type="protein sequence ID" value="ABX32653"/>
        <property type="gene ID" value="Daci_0006"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_0006"/>
    <dbReference type="eggNOG" id="COG0511">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_016733_9_0_4"/>
    <dbReference type="OMA" id="YEVCSPL"/>
    <dbReference type="UniPathway" id="UPA00094"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009317">
        <property type="term" value="C:acetyl-CoA carboxylase complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003989">
        <property type="term" value="F:acetyl-CoA carboxylase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006633">
        <property type="term" value="P:fatty acid biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniPathway"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001249">
        <property type="entry name" value="AcCoA_biotinCC"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000089">
        <property type="entry name" value="Biotin_lipoyl"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011053">
        <property type="entry name" value="Single_hybrid_motif"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00364">
        <property type="entry name" value="Biotin_lipoyl"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR01071">
        <property type="entry name" value="ACOABIOTINCC"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51230">
        <property type="entry name" value="SSF51230"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50968">
        <property type="entry name" value="BIOTINYL_LIPOYL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-0092">Biotin</keyword>
    <keyword evidence="3" id="KW-0275">Fatty acid biosynthesis</keyword>
    <keyword evidence="3" id="KW-0276">Fatty acid metabolism</keyword>
    <keyword evidence="3" id="KW-0444">Lipid biosynthesis</keyword>
    <keyword evidence="3" id="KW-0443">Lipid metabolism</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Lipoyl-binding" evidence="4">
        <location>
            <begin position="1"/>
            <end position="80"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00003761"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00017562"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="RuleBase" id="RU364072"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="PROSITE" id="PS50968"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="ABX32653.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="82" mass="8565" checksum="5DB19C9242E60076" modified="2008-01-15" version="1">MPATHEVLSPLPGTFYRRSAPDAPPFKAEGDTVAVGDVIGLVEVMKQFSEVTADVAGRLRGFAVENGEPVDPGQALAVIETA</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="74" xmlns="http://uniprot.org/uniprot">
    <accession>A9BPI1</accession>
    <name>A9BPI1_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="6">HpcH/HpaI aldolase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ordered locus">Daci_0202</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="7" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </cofactor>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX32848.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012202141.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_0202"/>
    <dbReference type="EnsemblBacteria" id="ABX32848">
        <property type="protein sequence ID" value="ABX32848"/>
        <property type="gene ID" value="Daci_0202"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_0202"/>
    <dbReference type="eggNOG" id="COG2301">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_044864_2_0_4"/>
    <dbReference type="OMA" id="WAMMETP"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003824">
        <property type="term" value="F:catalytic activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.20.20.60">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005000">
        <property type="entry name" value="Aldolase/citrate-lyase_domain"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011206">
        <property type="entry name" value="Citrate_lyase_beta/mcl1/mcl2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015813">
        <property type="entry name" value="Pyrv/PenolPyrv_Kinase-like_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR040442">
        <property type="entry name" value="Pyrv_Kinase-like_dom_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03328">
        <property type="entry name" value="HpcH_HpaI"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF015582">
        <property type="entry name" value="Cit_lyase_B"/>
        <property type="match status" value="1"/>
    </dbReference>
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        <property type="entry name" value="SSF51621"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-0460">Magnesium</keyword>
    <keyword evidence="2 4" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HpcH_HpaI" evidence="5">
        <location>
            <begin position="10"/>
            <end position="222"/>
        </location>
    </feature>
    <feature type="binding site" evidence="3">
        <location>
            <position position="71"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="3 4">
        <location>
            <position position="127"/>
        </location>
    </feature>
    <feature type="binding site" evidence="4">
        <location>
            <position position="153"/>
        </location>
        <ligand>
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001946"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="PIRSR" id="PIRSR015582-1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="PIRSR" id="PIRSR015582-2"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="Pfam" id="PF03328"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="ABX32848.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="290" mass="30367" checksum="3B2CADB1E5EE06D7" modified="2008-01-15" version="1">MHDLARQATSFLFVPATRPERLGKALDSGADMVIADWEDAVAPADKDGARQALAQAVGALEGPARARLLVRINAEGTPWHADDLRALAQLVEQGVAGAMVSKAERAQTLHAVAQAAGARAAVLPLIESVAGLDAADALAAAPQVVRLAFGHLDFQVDAGMACEQGEEELLPMRMALVLASRRAGIGAAVDGVTVDTRNPERLAQDAARARRMGFGGKLCIHPAQVQPLHAVFDPDAAAVAHAQRLRQALAEAGGGVCVLDGRMVDAPVLKQAEQVLLRHAWAQQRSAARS</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="57" xmlns="http://uniprot.org/uniprot">
    <accession>A9BPQ5</accession>
    <name>A9BPQ5_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Putative signal transduction histidine kinase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ordered locus">Daci_0378</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="5" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX33024.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012202317.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_0378"/>
    <dbReference type="PRIDE" id="A9BPQ5"/>
    <dbReference type="EnsemblBacteria" id="ABX33024">
        <property type="protein sequence ID" value="ABX33024"/>
        <property type="gene ID" value="Daci_0378"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_0378"/>
    <dbReference type="eggNOG" id="COG4585">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_014388_1_0_4"/>
    <dbReference type="OMA" id="ANDWFAW"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016301">
        <property type="term" value="F:kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016310">
        <property type="term" value="P:phosphorylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.565.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003594">
        <property type="entry name" value="HATPase_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036890">
        <property type="entry name" value="HATPase_C_sf"/>
    </dbReference>
    <dbReference type="SMART" id="SM00387">
        <property type="entry name" value="HATPase_c"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55874">
        <property type="entry name" value="SSF55874"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="4" id="KW-0418">Kinase</keyword>
    <keyword evidence="2" id="KW-0472">Membrane</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4" id="KW-0808">Transferase</keyword>
    <keyword evidence="2" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="2" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="212"/>
            <end position="233"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="240"/>
            <end position="260"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="272"/>
            <end position="295"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="302"/>
            <end position="323"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="329"/>
            <end position="351"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="363"/>
            <end position="384"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="390"/>
            <end position="409"/>
        </location>
    </feature>
    <feature type="domain" description="HATPase_c" evidence="3">
        <location>
            <begin position="552"/>
            <end position="649"/>
        </location>
    </feature>
    <feature type="coiled-coil region" evidence="1">
        <location>
            <begin position="416"/>
            <end position="450"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="SMART" id="SM00387"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="ABX33024.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="652" mass="71485" checksum="80DCE8EBBFBBC770" modified="2008-01-15" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="59" xmlns="http://uniprot.org/uniprot">
    <accession>A9BPT9</accession>
    <name>A9BPT9_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">UPF0250 protein Daci_0412</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Daci_0412</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="4" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the UPF0250 family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX33058.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012202350.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_0412"/>
    <dbReference type="PRIDE" id="A9BPT9"/>
    <dbReference type="EnsemblBacteria" id="ABX33058">
        <property type="protein sequence ID" value="ABX33058"/>
        <property type="gene ID" value="Daci_0412"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_0412"/>
    <dbReference type="eggNOG" id="COG2921">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_161438_1_0_4"/>
    <dbReference type="OMA" id="MNTKFDE"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00659">
        <property type="entry name" value="UPF0250"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007454">
        <property type="entry name" value="UPF0250"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027471">
        <property type="entry name" value="YbeD-like_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR38036">
        <property type="entry name" value="PTHR38036"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04359">
        <property type="entry name" value="DUF493"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF117991">
        <property type="entry name" value="SSF117991"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="1"/>
            <end position="22"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00659"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ABX33058.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="105" mass="11365" checksum="54CB2E9C652303BA" modified="2008-01-15" version="1">MTDAPTPSSAPAAAPGADPRKDSLIEYPSQFPIKVMGIKAEHLVHEITQIAERFDPAFDPSTIELRPSSSGKYLGVTVTVTATSREQLDDLYQAFTSHPLVKVVL</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="59" xmlns="http://uniprot.org/uniprot">
    <accession>A9BPV1</accession>
    <name>A9BPV1_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="7">TPM_phosphatase domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="8" type="ordered locus">Daci_0424</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="9" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX33070.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012202361.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_0424"/>
    <dbReference type="PRIDE" id="A9BPV1"/>
    <dbReference type="EnsemblBacteria" id="ABX33070">
        <property type="protein sequence ID" value="ABX33070"/>
        <property type="gene ID" value="Daci_0424"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_0424"/>
    <dbReference type="eggNOG" id="COG1512">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_035211_0_1_4"/>
    <dbReference type="OMA" id="MAPHFRQ"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007621">
        <property type="entry name" value="TPM_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04536">
        <property type="entry name" value="TPM_phosphatase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3 5" id="KW-0472">Membrane</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="6" id="KW-0732">Signal</keyword>
    <keyword evidence="1 5" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="2 5" id="KW-1133">Transmembrane helix</keyword>
    <feature type="signal peptide" evidence="6">
        <location>
            <begin position="1"/>
            <end position="20"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5002732982" description="TPM_phosphatase domain-containing protein" evidence="6">
        <location>
            <begin position="21"/>
            <end position="290"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="183"/>
            <end position="202"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="209"/>
            <end position="242"/>
        </location>
    </feature>
    <feature type="domain" description="TPM_phosphatase" evidence="7">
        <location>
            <begin position="32"/>
            <end position="154"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="4">
        <location>
            <begin position="266"/>
            <end position="290"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="Pfam" id="PF04536"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="ABX33070.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="290" mass="29255" checksum="8CDA75831C95A3F3" modified="2008-01-15" version="1">MLCALVLTMLLLPGSTLAQAPQPVPALSARLIDQTGTLSADEARAIEDRLRGIEQKSGSQVVVLMVATTAPEDIAAYTWRVASDWKIGRRDVGDGLLVVIAKNDRRMRMEVARALEGAIPDLAAARIIDQQMAPRFRQGDYAGGITAALDQVAARIAGEQLPAPSSSPQSSKSPDRGFDMEDLMLFFFFGVAVVGPILRSVLGRPLASVLAGAGAGIAAYVVTASLLVAAGAGVVALLFTLLGSGRSGRGGGGGWGGGGGFGGGGGRSGGGGFSSGRGGSFGGGGASGSW</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="64" xmlns="http://uniprot.org/uniprot">
    <accession>A9BQG4</accession>
    <name>A9BQG4_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="3">AMP-dependent synthetase and ligase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Daci_0928</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="4" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX33574.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012202860.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_0928"/>
    <dbReference type="PRIDE" id="A9BQG4"/>
    <dbReference type="EnsemblBacteria" id="ABX33574">
        <property type="protein sequence ID" value="ABX33574"/>
        <property type="gene ID" value="Daci_0928"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_0928"/>
    <dbReference type="eggNOG" id="COG0318">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_000022_59_7_4"/>
    <dbReference type="OMA" id="AKRNSIY"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016874">
        <property type="term" value="F:ligase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.300.30">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.12780">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025110">
        <property type="entry name" value="AMP-bd_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045851">
        <property type="entry name" value="AMP-bd_C_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020845">
        <property type="entry name" value="AMP-binding_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000873">
        <property type="entry name" value="AMP-dep_Synth/Lig"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR042099">
        <property type="entry name" value="ANL_N_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00501">
        <property type="entry name" value="AMP-binding"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13193">
        <property type="entry name" value="AMP-binding_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00455">
        <property type="entry name" value="AMP_BINDING"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-0436">Ligase</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="AMP-binding" evidence="1">
        <location>
            <begin position="53"/>
            <end position="461"/>
        </location>
    </feature>
    <feature type="domain" description="AMP-binding_C" evidence="2">
        <location>
            <begin position="471"/>
            <end position="546"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF00501"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF13193"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ABX33574.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="553" mass="59306" checksum="936FBA7201037AEC" modified="2008-01-15" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="70" xmlns="http://uniprot.org/uniprot">
    <accession>A9BQI1</accession>
    <name>A9BQI1_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Aldo/keto reductase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ordered locus">Daci_0945</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="6" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX33591.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012202877.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_0945"/>
    <dbReference type="PRIDE" id="A9BQI1"/>
    <dbReference type="EnsemblBacteria" id="ABX33591">
        <property type="protein sequence ID" value="ABX33591"/>
        <property type="gene ID" value="Daci_0945"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_0945"/>
    <dbReference type="eggNOG" id="COG0656">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_023205_0_1_4"/>
    <dbReference type="OMA" id="WRHPDEP"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016491">
        <property type="term" value="F:oxidoreductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.20.20.100">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020471">
        <property type="entry name" value="AKR"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018170">
        <property type="entry name" value="Aldo/ket_reductase_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023210">
        <property type="entry name" value="NADP_OxRdtase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036812">
        <property type="entry name" value="NADP_OxRdtase_dom_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43827">
        <property type="entry name" value="PTHR43827"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00248">
        <property type="entry name" value="Aldo_ket_red"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF000097">
        <property type="entry name" value="AKR"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00069">
        <property type="entry name" value="ALDKETRDTASE"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51430">
        <property type="entry name" value="SSF51430"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00798">
        <property type="entry name" value="ALDOKETO_REDUCTASE_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00062">
        <property type="entry name" value="ALDOKETO_REDUCTASE_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Aldo_ket_red" evidence="4">
        <location>
            <begin position="22"/>
            <end position="257"/>
        </location>
    </feature>
    <feature type="active site" description="Proton donor" evidence="1">
        <location>
            <position position="47"/>
        </location>
    </feature>
    <feature type="binding site" evidence="2">
        <location>
            <position position="105"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="site" description="Lowers pKa of active site Tyr" evidence="3">
        <location>
            <position position="72"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="PIRSR" id="PIRSR000097-1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="PIRSR" id="PIRSR000097-2"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="PIRSR" id="PIRSR000097-3"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="Pfam" id="PF00248"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="ABX33591.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="273" mass="29164" checksum="8C7D59FA09C2C0BD" modified="2008-01-15" version="1">MTSTASLASVVPAFGLGTFRLKDEVVRHSVGQALEVGYRAIDTAQIYGNEADVGAAIAASAVSRDQLFLTTKIWTENLSADALIPSLERSLEALRTDHVELTLIHWPSRSVPLEDSLGALMRAREQGLTRHIGVSNFNIALLQQSIAAVGAANIATNQIELSPYLQNRAVTDFARQQGIHTTSYMTLGYGKLLADPVLADIAAAHGATPAQVALAWAMAKGYAVIPSSTQRAHLQANLDSCRLVLGAEDMQRIAALERGDRQVSPDGLAPAWD</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="83" xmlns="http://uniprot.org/uniprot">
    <accession>A9BQK8</accession>
    <name>A9BQK8_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Transcriptional regulator, LysR family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Daci_0063</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="4" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the LysR transcriptional regulatory family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX32710.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012202003.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_0063"/>
    <dbReference type="PRIDE" id="A9BQK8"/>
    <dbReference type="EnsemblBacteria" id="ABX32710">
        <property type="protein sequence ID" value="ABX32710"/>
        <property type="gene ID" value="Daci_0063"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_0063"/>
    <dbReference type="eggNOG" id="COG0583">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_039613_16_2_4"/>
    <dbReference type="OMA" id="RFQAMQV"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003700">
        <property type="term" value="F:DNA-binding transcription factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005119">
        <property type="entry name" value="LysR_subst-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000847">
        <property type="entry name" value="Tscrpt_reg_HTH_LysR"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036390">
        <property type="entry name" value="WH_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00126">
        <property type="entry name" value="HTH_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03466">
        <property type="entry name" value="LysR_substrate"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46785">
        <property type="entry name" value="SSF46785"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50931">
        <property type="entry name" value="HTH_LYSR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HTH lysR-type" evidence="2">
        <location>
            <begin position="1"/>
            <end position="58"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00009437"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS50931"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ABX32710.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="301" mass="33117" checksum="7D549DB4A06E2BD9" modified="2008-01-15" version="1">MDLGGLSLLVDIIEAGNLSRAAVRLGMSRANVSHRLNQFERQIGQQLLRRTTRQVEPTELGLRLYAHGRAIRQEAMAADESVDSLGQSLQGTVRLSVPSGYGQLQMSGWLTEFMRMHPGITLEVIFDNDIEDLMQGAVDFAVRVMTEPPESLVACKLGDVLYEACATPQFLAQHGQPDSLLALKRVPLITSALTGQKLRTAGMNGARPTELRIRPRLMSPNFHFLRDAVLQGLGVAVVPRYMVAAELASGALERLPLPPGSLDFLATRQYLLYMPSHYQTRAITTLIDFLREKAAAEGLRG</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="78" xmlns="http://uniprot.org/uniprot">
    <accession>A9BQM6</accession>
    <name>A9BQM6_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="8">ABC transporter related</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="8" type="ordered locus">Daci_0081</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="9" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX32728.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_0081"/>
    <dbReference type="PRIDE" id="A9BQM6"/>
    <dbReference type="EnsemblBacteria" id="ABX32728">
        <property type="protein sequence ID" value="ABX32728"/>
        <property type="gene ID" value="Daci_0081"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_0081"/>
    <dbReference type="eggNOG" id="COG0410">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_000604_1_2_4"/>
    <dbReference type="OMA" id="RVICMLE"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003593">
        <property type="entry name" value="AAA+_ATPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003439">
        <property type="entry name" value="ABC_transporter-like_ATP-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017871">
        <property type="entry name" value="ABC_transporter-like_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00005">
        <property type="entry name" value="ABC_tran"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00382">
        <property type="entry name" value="AAA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00211">
        <property type="entry name" value="ABC_TRANSPORTER_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50893">
        <property type="entry name" value="ABC_TRANSPORTER_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3 6" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="1" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="5" id="KW-0472">Membrane</keyword>
    <keyword evidence="2 6" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4" id="KW-1278">Translocase</keyword>
    <feature type="domain" description="ABC transporter" evidence="7">
        <location>
            <begin position="6"/>
            <end position="237"/>
        </location>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <begin position="38"/>
            <end position="45"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022967"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00434"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="PROSITE" id="PS50893"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="ABX32728.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="237" mass="25870" checksum="3F98387642AD64FB" modified="2008-01-15" version="1">MTEPMFAIDELHTYYGDSHILQGVSLALGAGQAVGLLGRNGMGKTTLIRTLMGYVPARRGRLRADGRDCTGAPPERMARLGIGYVPEGRGIFPNLSVRENLVMSARPGLQGERHWTLERVLDTFPRLAERLANGGDQLSGGEQQMLSIGRALMTHPRLLILDEATEGLAPLVVAEIWRVIAAIRSTGISTLIVDRDYKKVLAHTDRAVVMAKGRLALQADSRELLTQPERLSELLGV</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="66" xmlns="http://uniprot.org/uniprot">
    <accession>A9BQN4</accession>
    <name>A9BQN4_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Acyl-CoA dehydrogenase domain protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ordered locus">Daci_0089</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="6" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the acyl-CoA dehydrogenase family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX32736.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012202029.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_0089"/>
    <dbReference type="PRIDE" id="A9BQN4"/>
    <dbReference type="EnsemblBacteria" id="ABX32736">
        <property type="protein sequence ID" value="ABX32736"/>
        <property type="gene ID" value="Daci_0089"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_0089"/>
    <dbReference type="eggNOG" id="COG1960">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_018204_5_0_4"/>
    <dbReference type="OMA" id="GSEAYWH"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0050660">
        <property type="term" value="F:flavin adenine dinucleotide binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016627">
        <property type="term" value="F:oxidoreductase activity, acting on the CH-CH group of donors"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.540.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036250">
        <property type="entry name" value="AcylCo_DH-like_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009075">
        <property type="entry name" value="AcylCo_DH/oxidase_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013786">
        <property type="entry name" value="AcylCoA_DH/ox_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037069">
        <property type="entry name" value="AcylCoA_DH/ox_N_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009100">
        <property type="entry name" value="AcylCoA_DH/oxidase_NM_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00441">
        <property type="entry name" value="Acyl-CoA_dh_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02771">
        <property type="entry name" value="Acyl-CoA_dh_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47203">
        <property type="entry name" value="SSF47203"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56645">
        <property type="entry name" value="SSF56645"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2" id="KW-0274">FAD</keyword>
    <keyword evidence="2" id="KW-0285">Flavoprotein</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Acyl-CoA_dh_N" evidence="4">
        <location>
            <begin position="2"/>
            <end position="85"/>
        </location>
    </feature>
    <feature type="domain" description="Acyl-CoA_dh_1" evidence="3">
        <location>
            <begin position="186"/>
            <end position="307"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00009347"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022827"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF00441"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="Pfam" id="PF02771"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="ABX32736.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="342" mass="35898" checksum="5A59B328D61EAED5" modified="2008-01-15" version="1">MEDDLFADAARQLLQGECTPARVRAIEAGGSPRALWQSLEQAGFADALVPEHAGGAGLALAQLFDVWSQAGAHALPVPLGETMLARALLAGAGAERPPGAIALVQGLLQPDGSLHCEPVRLGAVADSVLVQHAQGWSLLPVAQAQSKPAAFCLDVNLRWSAEQVRAAPAPAIALPGGLDLRTLQAGLVAAQLAGALMEVFQRTLQYANDRQQFGRPIGKFQAIQHQLAVMSEHVFAARMAARLGCAGQGIFPERLRVAVAKARCSQAALAVAEAAHAIHGAMGFTEEYDLQLLTRRLHAWRQTAGSESYWHGVAGAALVHGHAGSTLDLIRSTTDITADITA</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="63" xmlns="http://uniprot.org/uniprot">
    <accession>A9BQS7</accession>
    <name>A9BQS7_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">DegT/DnrJ/EryC1/StrS aminotransferase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_0133</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the DegT/DnrJ/EryC1 family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX32779.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012202072.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_0133"/>
    <dbReference type="PRIDE" id="A9BQS7"/>
    <dbReference type="EnsemblBacteria" id="ABX32779">
        <property type="protein sequence ID" value="ABX32779"/>
        <property type="gene ID" value="Daci_0133"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_0133"/>
    <dbReference type="eggNOG" id="COG0399">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_036177_0_0_4"/>
    <dbReference type="OMA" id="YTCPLVA"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008483">
        <property type="term" value="F:transaminase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.640.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000653">
        <property type="entry name" value="DegT/StrS_aminotransferase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015424">
        <property type="entry name" value="PyrdxlP-dep_Trfase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015421">
        <property type="entry name" value="PyrdxlP-dep_Trfase_major"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30244">
        <property type="entry name" value="PTHR30244"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01041">
        <property type="entry name" value="DegT_DnrJ_EryC1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53383">
        <property type="entry name" value="SSF53383"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2" id="KW-0032">Aminotransferase</keyword>
    <keyword evidence="1" id="KW-0663">Pyridoxal phosphate</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0808">Transferase</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="RuleBase" id="RU004508"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX32779.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="408" mass="44113" checksum="E350CBAF160DF9B0" modified="2008-01-15" version="1">MAERVLPPTAGLPLRAADLLPWGDADLATALAQWLGVPAVQLECSGTSALMVALQTLRRLAPGRSEVIAPAYTCPLVALAVAHCGLQLRLCDLHPDTLDMDPARLRSLCSECTLAVLPTHLCGRVADVATAVDCARAVGAWVVEDAAQALGARLRGEPVGWQGDVGFYSLAVGKGLTTFEGGVLLARDPALREALRETHAASVRQDRGWELRRSLELLGYAALYRPAGLDLAYGRPLRAALSRSDWVQAAGDDFDDAIPCHELGAWRRRVGRRALARLADFQQQLQRQARERGAWLSAIDGIEVVGDTVPGAQGVWPVLLLRLRDAATRDALLRAQWGLGWGLSLPFVHVLPDYGRYDHVLGLARQDVVDQGRDWAQRLVAVGNSLWFDDARFEALLSLLEGPHAAPG</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="58" xmlns="http://uniprot.org/uniprot">
    <accession>A9BQU9</accession>
    <name>A9BQU9_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Ribonuclease BN</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ordered locus">Daci_0258</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="5" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX32904.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_0258"/>
    <dbReference type="PRIDE" id="A9BQU9"/>
    <dbReference type="EnsemblBacteria" id="ABX32904">
        <property type="protein sequence ID" value="ABX32904"/>
        <property type="gene ID" value="Daci_0258"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_0258"/>
    <dbReference type="eggNOG" id="COG1295">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_045539_5_3_4"/>
    <dbReference type="OMA" id="MWIYFSS"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017039">
        <property type="entry name" value="Virul_fac_BrkB"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30213">
        <property type="entry name" value="PTHR30213"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03631">
        <property type="entry name" value="Virul_fac_BrkB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF035875">
        <property type="entry name" value="RNase_BN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2 3" id="KW-0472">Membrane</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="3" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="3">
        <location>
            <begin position="54"/>
            <end position="75"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="3">
        <location>
            <begin position="115"/>
            <end position="135"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="3">
        <location>
            <begin position="167"/>
            <end position="191"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="3">
        <location>
            <begin position="203"/>
            <end position="227"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="3">
        <location>
            <begin position="239"/>
            <end position="262"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="3">
        <location>
            <begin position="268"/>
            <end position="293"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="ABX32904.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="331" mass="35903" checksum="EF47AFDB7111ECD6" modified="2008-01-15" version="1">MRAMPSDTPETPPASPWSARLQRLMELNPLRAMWNAVQLWLDADGLRMSAAMSFYGILSLAPLLLLLVGLLGWWVDRSYVEHQLIDQVQDVIGERGAQVVRGALESAQRPDEGRLASLFGFILLMSGATGVFVELQSALEKLWTSNGEPPPPKAVWWRMAALRLRGLTYVLALGFLLLVSMALSTAIQLITNWAGTKLQMQPLGPLISLINECVSFGIAVLLFVGLMRIGSGPKPRLRYLIFGAIVGALLFTLGKQALAWYLSTAAVVSAYGAAGSLVVLLMWIYFSSAILLLSAATAKAFSDAEVRFTHPIRWAPPAGPAQARDTSDGKG</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="45" xmlns="http://uniprot.org/uniprot">
    <accession>A9BRA2</accession>
    <name>A9BRA2_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Putative proline rich signal peptide protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Daci_0514</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="2" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX33160.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012202446.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_0514"/>
    <dbReference type="PRIDE" id="A9BRA2"/>
    <dbReference type="EnsemblBacteria" id="ABX33160">
        <property type="protein sequence ID" value="ABX33160"/>
        <property type="gene ID" value="Daci_0514"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_0514"/>
    <dbReference type="eggNOG" id="ENOG502ZZV8">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_070058_2_0_4"/>
    <dbReference type="OMA" id="WKRFTFT"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025500">
        <property type="entry name" value="DUF4390"/>
    </dbReference>
    <dbReference type="Pfam" id="PF14334">
        <property type="entry name" value="DUF4390"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ABX33160.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="187" mass="20990" checksum="39A55E7DF6430153" modified="2008-01-15" version="1">MLAGVLAGLSLQARADALTAEIGPMQLDRSDDGLLLSATLHFELPYQIDDALRQGIPMYFVADAQIQRERWYWSDQQLATASRHYRLSHQPLTRRWRLHISSTPFSSSGLGLALGQTFESLDDALASMQRISRWKIMDTAPTQSGVSVQLRFRIDLSQLPRPLQIGALGRSGWNLQLSRTQMLEDAP</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="68" xmlns="http://uniprot.org/uniprot">
    <accession>A9BRA8</accession>
    <name>A9BRA8_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="6">RecBCD enzyme subunit RecC</fullName>
            <ecNumber evidence="6">3.1.11.5</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="6">Exonuclease V subunit RecC</fullName>
            <shortName evidence="6">ExoV subunit RecC</shortName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="6">Helicase/nuclease RecBCD subunit RecC</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="6" type="primary">recC</name>
        <name evidence="8" type="ordered locus">Daci_0520</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="9" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="6">A helicase/nuclease that prepares dsDNA breaks (DSB) for recombinational DNA repair. Binds to DSBs and unwinds DNA via a highly rapid and processive ATP-dependent bidirectional helicase activity. Unwinds dsDNA until it encounters a Chi (crossover hotspot instigator) sequence from the 3' direction. Cuts ssDNA a few nucleotides 3' to the Chi site. The properties and activities of the enzyme are changed at Chi. The Chi-altered holoenzyme produces a long 3'-ssDNA overhang and facilitates RecA-binding to the ssDNA for homologous DNA recombination and repair. Holoenzyme degrades any linearized DNA that is unable to undergo homologous recombination. In the holoenzyme this subunit recognizes the wild-type Chi sequence, and when added to isolated RecB increases its ATP-dependent helicase processivity.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="6">
            <text>Exonucleolytic cleavage (in the presence of ATP) in either 5'- to 3'- or 3'- to 5'-direction to yield 5'-phosphooligonucleotides.</text>
            <dbReference type="EC" id="3.1.11.5"/>
        </reaction>
    </comment>
    <comment type="subunit">
        <text evidence="6">Heterotrimer of RecB, RecC and RecD. All subunits contribute to DNA-binding.</text>
    </comment>
    <comment type="similarity">
        <text evidence="6">Belongs to the RecC family.</text>
    </comment>
    <dbReference type="EC" id="3.1.11.5" evidence="6"/>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX33166.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012202452.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_0520"/>
    <dbReference type="PRIDE" id="A9BRA8"/>
    <dbReference type="EnsemblBacteria" id="ABX33166">
        <property type="protein sequence ID" value="ABX33166"/>
        <property type="gene ID" value="Daci_0520"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_0520"/>
    <dbReference type="eggNOG" id="COG1330">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_007513_1_0_4"/>
    <dbReference type="OMA" id="SFDLMQY"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009338">
        <property type="term" value="C:exodeoxyribonuclease V complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003678">
        <property type="term" value="F:DNA helicase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008854">
        <property type="term" value="F:exodeoxyribonuclease V activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000724">
        <property type="term" value="P:double-strand break repair via homologous recombination"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.160">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01486">
        <property type="entry name" value="RecC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013986">
        <property type="entry name" value="DExx_box_DNA_helicase_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006697">
        <property type="entry name" value="RecC"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041500">
        <property type="entry name" value="RecC_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011335">
        <property type="entry name" value="Restrct_endonuc-II-like"/>
    </dbReference>
    <dbReference type="Pfam" id="PF17946">
        <property type="entry name" value="RecC_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF000980">
        <property type="entry name" value="RecC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52980">
        <property type="entry name" value="SSF52980"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01450">
        <property type="entry name" value="recC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4 6" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="6" id="KW-0227">DNA damage</keyword>
    <keyword evidence="6" id="KW-0234">DNA repair</keyword>
    <keyword evidence="5 6" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="6" id="KW-0269">Exonuclease</keyword>
    <keyword evidence="6" id="KW-0347">Helicase</keyword>
    <keyword evidence="3 6" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="1 6" id="KW-0540">Nuclease</keyword>
    <keyword evidence="2 6" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="RecC_C" evidence="7">
        <location>
            <begin position="852"/>
            <end position="1104"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022722"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01486"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="Pfam" id="PF17946"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="ABX33166.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="1174" mass="130425" checksum="3321D012C9BC8E85" modified="2008-01-15" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="48" xmlns="http://uniprot.org/uniprot">
    <accession>A9BRF3</accession>
    <name>A9BRF3_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Putative transmembrane protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_0668</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX33314.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012202600.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_0668"/>
    <dbReference type="PRIDE" id="A9BRF3"/>
    <dbReference type="EnsemblBacteria" id="ABX33314">
        <property type="protein sequence ID" value="ABX33314"/>
        <property type="gene ID" value="Daci_0668"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_0668"/>
    <dbReference type="eggNOG" id="COG3556">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_092231_2_0_4"/>
    <dbReference type="OMA" id="WAIPLRK"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018706">
        <property type="entry name" value="DUF2214_membrane"/>
    </dbReference>
    <dbReference type="Pfam" id="PF09980">
        <property type="entry name" value="DUF2214"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1 2" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="47"/>
            <end position="66"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="78"/>
            <end position="95"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="126"/>
            <end position="145"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX33314.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="148" mass="16532" checksum="F41311C187C295C0" modified="2008-01-15" version="1">MTIEAILASLHLLAILTFVVFLSSQAALCRSEWMNAAVVQRLARLDMIYGLAVVFLVLTGIARLVWGVKGMSWYVSQPLFHLKMTLFVVGALLSIKPTLAFRRWRRALDAGQGLPQPAEVASTRRWVMWQAHVVPVIAVVAVFWARGM</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="69" xmlns="http://uniprot.org/uniprot">
    <accession>A9BRN7</accession>
    <name>A9BRN7_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Short-chain dehydrogenase/reductase SDR</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Daci_0958</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="2" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX33604.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012202890.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_0958"/>
    <dbReference type="PRIDE" id="A9BRN7"/>
    <dbReference type="EnsemblBacteria" id="ABX33604">
        <property type="protein sequence ID" value="ABX33604"/>
        <property type="gene ID" value="Daci_0958"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_0958"/>
    <dbReference type="eggNOG" id="COG1028">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_010194_1_2_4"/>
    <dbReference type="OMA" id="GNHAYSA"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036291">
        <property type="entry name" value="NAD(P)-bd_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002347">
        <property type="entry name" value="SDR_fam"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00106">
        <property type="entry name" value="adh_short"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00081">
        <property type="entry name" value="GDHRDH"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51735">
        <property type="entry name" value="SSF51735"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ABX33604.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="265" mass="28507" checksum="31B745DD920F971F" modified="2008-01-15" version="1">MFDSQLKDTTAVVTGGSSGIGLATVDLLLSQGARVALCGRSAERLEQAVQQLRERHPEARLFAQACDVLDAAQVQQFARDSEAALGPASILVNNAGQGRVSTFASTDDAAWTEELHLKFFSVLHPTRAFLPQLERTAQPAIVCVNSLLASQPEPHMVATSAARAGLKNLVRSMATEFAPKGVRVNGILVGLIESGQWRRRFEAREDRSQDWNAWSADLARKKSIPLGRLGSPDEAARAIFYLATPLSSYTTGSHIDVSGGLARQA</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="74" xmlns="http://uniprot.org/uniprot">
    <accession>A9BRR4</accession>
    <name>A9BRR4_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="5">PfkB domain protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ordered locus">Daci_0985</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="6" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX33631.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_0985"/>
    <dbReference type="PRIDE" id="A9BRR4"/>
    <dbReference type="EnsemblBacteria" id="ABX33631">
        <property type="protein sequence ID" value="ABX33631"/>
        <property type="gene ID" value="Daci_0985"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_0985"/>
    <dbReference type="eggNOG" id="COG0524">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="eggNOG" id="COG3892">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_027634_6_0_4"/>
    <dbReference type="OMA" id="WPLEHVV"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016301">
        <property type="term" value="F:kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016773">
        <property type="term" value="F:phosphotransferase activity, alcohol group as acceptor"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016310">
        <property type="term" value="P:phosphorylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.20.150.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.20.20.70">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.1190.20">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013785">
        <property type="entry name" value="Aldolase_TIM"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002173">
        <property type="entry name" value="Carboh/pur_kinase_PfkB_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018659">
        <property type="entry name" value="DUF2090"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR030830">
        <property type="entry name" value="Myo_inos_IolC"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023314">
        <property type="entry name" value="Myo_inos_IolC-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011611">
        <property type="entry name" value="PfkB_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029056">
        <property type="entry name" value="Ribokinase-like"/>
    </dbReference>
    <dbReference type="Pfam" id="PF09863">
        <property type="entry name" value="DUF2090"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00294">
        <property type="entry name" value="PfkB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53613">
        <property type="entry name" value="SSF53613"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR04382">
        <property type="entry name" value="myo_inos_iolC_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00584">
        <property type="entry name" value="PFKB_KINASES_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0418">Kinase</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="PfkB" evidence="3">
        <location>
            <begin position="15"/>
            <end position="331"/>
        </location>
    </feature>
    <feature type="domain" description="DUF2090" evidence="4">
        <location>
            <begin position="334"/>
            <end position="645"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022777"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF00294"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="Pfam" id="PF09863"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="ABX33631.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="659" mass="71597" checksum="0ABC82FDC39A4674" modified="2008-01-15" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="56" xmlns="http://uniprot.org/uniprot">
    <accession>A9BRS3</accession>
    <name>A9BRS3_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Daci_0994</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="2" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX33640.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_0994"/>
    <dbReference type="PRIDE" id="A9BRS3"/>
    <dbReference type="EnsemblBacteria" id="ABX33640">
        <property type="protein sequence ID" value="ABX33640"/>
        <property type="gene ID" value="Daci_0994"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_0994"/>
    <dbReference type="eggNOG" id="COG0115">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_070540_0_0_4"/>
    <dbReference type="OMA" id="YGHFTSM"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003824">
        <property type="term" value="F:catalytic activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.20.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.470.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001544">
        <property type="entry name" value="Aminotrans_IV"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036038">
        <property type="entry name" value="Aminotransferase-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043132">
        <property type="entry name" value="BCAT-like_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043131">
        <property type="entry name" value="BCAT-like_N"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01063">
        <property type="entry name" value="Aminotran_4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56752">
        <property type="entry name" value="SSF56752"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ABX33640.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="272" mass="29386" checksum="CAAECAD6497CBC88" modified="2008-01-15" version="1">MDEPMETASFFTSLIDGQPATAAELAALAFAGHAHFTAMQVRDGRLRGLDLHLQRLRQASLELYGQALSDDHVQAQLRAALADGPQDVSLTATVYSPAGEFTAADARPRMLVRTSAPASGPAGPLSLALFEHERMLPHLKHVGEVAKTHLLRRAVAQGFDDAAFADRHGRIGEATIWNLAFWDGDAVVWPRAQVLPGTTESMLRRQLQRLGVAQRQAVLTLADLPPLAGAVVMNSWSPGIPVRRLADVHLPDAPGFVQLLHRAHEAEEPVAP</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-01-19" version="63" xmlns="http://uniprot.org/uniprot">
    <accession>A9BRS6</accession>
    <name>A9BRS6_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_0997</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX33643.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012202929.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="ABX33643">
        <property type="protein sequence ID" value="ABX33643"/>
        <property type="gene ID" value="Daci_0997"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_0997"/>
    <dbReference type="eggNOG" id="COG0697">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_060016_3_0_4"/>
    <dbReference type="OMA" id="PWPEPHM"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="6"/>
            <end position="25"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="32"/>
            <end position="53"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="65"/>
            <end position="82"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="94"/>
            <end position="115"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="121"/>
            <end position="139"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="151"/>
            <end position="171"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="177"/>
            <end position="199"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="211"/>
            <end position="233"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="239"/>
            <end position="260"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="267"/>
            <end position="285"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX33643.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="286" mass="29743" checksum="ED677004A5BC142C" modified="2008-01-15" version="1">MELSNAVLAAALGAALMNAGWNSAIKLGGDKMVAMALTTGLASLWSLLVLPWLDWRAAGLWDASVWWWLAASVAVHTVYHFVLPRAYQHGEFGVVYPVARGSAPLFVTLGAALLAGEWPGATGLAGVLCLSLGVLALSVRSGAASGYGGSGYALATGAMIACYTVIDGLGARASGSALLYAALLTLGDGLATVLIVAWRRGPAVLRADARTWRLCALAAAMQLSASWMATWALSQAPMGLVSALRESSVLFAGWIAAWLMRERLGRVRMLASALVFGGIVLVRWGG</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="31" xmlns="http://uniprot.org/uniprot">
    <accession>A9BS52</accession>
    <name>A9BS52_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Daci_0816</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="2" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX33462.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012202748.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_0816"/>
    <dbReference type="PRIDE" id="A9BS52"/>
    <dbReference type="EnsemblBacteria" id="ABX33462">
        <property type="protein sequence ID" value="ABX33462"/>
        <property type="gene ID" value="Daci_0816"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_0816"/>
    <dbReference type="HOGENOM" id="CLU_1640995_0_0_4"/>
    <dbReference type="OMA" id="THAFDAY"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ABX33462.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="165" mass="17831" checksum="9644750B3BB6EF13" modified="2008-01-15" version="1">MPLPRARTLLWSLVLCLPLAVFGWLAAALCLISQEDYTPEPGSFTYYIGISSLVRHAPLVGALGKAEYFGTVGDGNKPPHGLVSYDVEFASIGPATHAFDAYLLGKGYSRTADDETPGPSYGMGRRVRHARYTASSGQVVYVEVVQASSAEQGPVRYRATMAHYD</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="87" xmlns="http://uniprot.org/uniprot">
    <accession>A9BS64</accession>
    <name>A9BS64_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="2 7 10">Phosphoglycerate kinase</fullName>
            <ecNumber evidence="2 7 10">2.7.2.3</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="7" type="primary">pgk</name>
        <name evidence="11" type="ordered locus">Daci_0828</name>
    </gene>
    <organism evidence="11 12">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="11 12" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="12">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="12" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="12">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="1 7 10">
            <text>(2R)-3-phosphoglycerate + ATP = (2R)-3-phospho-glyceroyl phosphate + ADP</text>
            <dbReference type="Rhea" id="RHEA:14801"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:57604"/>
            <dbReference type="ChEBI" id="CHEBI:58272"/>
            <dbReference type="ChEBI" id="CHEBI:456216"/>
            <dbReference type="EC" id="2.7.2.3"/>
        </reaction>
    </comment>
    <comment type="pathway">
        <text evidence="7">Carbohydrate degradation; glycolysis; pyruvate from D-glyceraldehyde 3-phosphate: step 2/5.</text>
    </comment>
    <comment type="subunit">
        <text evidence="7">Monomer.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="7">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="7 10">Belongs to the phosphoglycerate kinase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="7">Lacks conserved residue(s) required for the propagation of feature annotation.</text>
    </comment>
    <dbReference type="EC" id="2.7.2.3" evidence="2 7 10"/>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX33474.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_0828"/>
    <dbReference type="PRIDE" id="A9BS64"/>
    <dbReference type="EnsemblBacteria" id="ABX33474">
        <property type="protein sequence ID" value="ABX33474"/>
        <property type="gene ID" value="Daci_0828"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_0828"/>
    <dbReference type="eggNOG" id="COG0126">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_025427_0_2_4"/>
    <dbReference type="OMA" id="DMIFDIG"/>
    <dbReference type="UniPathway" id="UPA00109">
        <property type="reaction ID" value="UER00185"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004618">
        <property type="term" value="F:phosphoglycerate kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006096">
        <property type="term" value="P:glycolytic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.1260">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00145">
        <property type="entry name" value="Phosphoglyc_kinase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001576">
        <property type="entry name" value="Phosphoglycerate_kinase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015911">
        <property type="entry name" value="Phosphoglycerate_kinase_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015824">
        <property type="entry name" value="Phosphoglycerate_kinase_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036043">
        <property type="entry name" value="Phosphoglycerate_kinase_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11406">
        <property type="entry name" value="PTHR11406"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00162">
        <property type="entry name" value="PGK"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF000724">
        <property type="entry name" value="Pgk"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00477">
        <property type="entry name" value="PHGLYCKINASE"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53748">
        <property type="entry name" value="SSF53748"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00111">
        <property type="entry name" value="PGLYCERATE_KINASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="6 7 9" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="7" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="7" id="KW-0324">Glycolysis</keyword>
    <keyword evidence="5 7 10" id="KW-0418">Kinase</keyword>
    <keyword evidence="4 7" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="12" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 7 10" id="KW-0808">Transferase</keyword>
    <feature type="region of interest" description="Substrate binding" evidence="7 8">
        <location>
            <begin position="66"/>
            <end position="68"/>
        </location>
    </feature>
    <feature type="region of interest" description="Substrate binding" evidence="7 8">
        <location>
            <begin position="105"/>
            <end position="108"/>
        </location>
    </feature>
    <feature type="binding site" evidence="7 8">
        <location>
            <position position="82"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="7 8">
        <location>
            <position position="159"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="7 8">
        <location>
            <position position="192"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="7 9">
        <location>
            <position position="243"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="7 9">
        <location>
            <position position="365"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="7 9">
        <location>
            <begin position="391"/>
            <end position="394"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00000642"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00013061"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022777"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00145"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="PIRSR" id="PIRSR000724-1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="PIRSR" id="PIRSR000724-2"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="RuleBase" id="RU000532"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="EMBL" id="ABX33474.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="438" mass="45685" checksum="89FE45980E38C4CE" modified="2008-01-15" version="1">MPRIAGAPARSRGGHAAYNGRALPLFRFNSMAIATDRNAAVMNILRFSDLCAQGKAQGQRVFIRADLNVPLNDAGEITEDTRVRASVPAIEMALKAGAAVMVTSHLGRPTEGEFKPADSLAPVARRLGELLGREVPLVADWVDGVQVAPGQVVLLENCRVNVGEKKNKEELARKLAALCDIFVHDAFGTAHRAEGTTYGIAQFAPIACAGPLLSAEIDAITKALANPRRPLAAIVAGSKVSTKLTILQSLAKNVDQLIVGGGIANTFMLAAGLNIGKSLAEADLVGEARAVIDAMAARGAEVPIPTDVVVSKTFAADAPATVKKATEVADDDMILDIGPETAARLAEQLRKAGTIVWNGPMGVFEFDQFANGTKVVAQAIAESDAFSIAGGGDTLAAIAKYGIEDKVGYISTGGGAFLEVLEGKTLPAFEILQKRANG</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="64" xmlns="http://uniprot.org/uniprot">
    <accession>A9BS75</accession>
    <name>A9BS75_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="4 10">Sec translocon accessory complex subunit YajC</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="10" type="primary">yajC</name>
        <name evidence="11" type="ordered locus">Daci_0839</name>
    </gene>
    <organism evidence="11 12">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="11 12" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="12">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="12" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="12">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="10">The SecYEG-SecDF-YajC-YidC holo-translocon (HTL) protein secretase/insertase is a supercomplex required for protein secretion, insertion of proteins into membranes, and assembly of membrane protein complexes. While the SecYEG complex is essential for assembly of a number of proteins and complexes, the SecDF-YajC-YidC subcomplex facilitates these functions.</text>
    </comment>
    <comment type="subunit">
        <text evidence="10">Part of the SecDF-YidC-YajC translocase complex. The SecDF-YidC-YajC translocase forms a supercomplex with SecYEG, called the holo-translocon (HTL).</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="2">Cell inner membrane</location>
            <topology evidence="2">Single-pass membrane protein</topology>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Single-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="3 10">Belongs to the YajC family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX33485.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012202771.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_0839"/>
    <dbReference type="PRIDE" id="A9BS75"/>
    <dbReference type="EnsemblBacteria" id="ABX33485">
        <property type="protein sequence ID" value="ABX33485"/>
        <property type="gene ID" value="Daci_0839"/>
    </dbReference>
    <dbReference type="GeneID" id="60685401"/>
    <dbReference type="KEGG" id="dac:Daci_0839"/>
    <dbReference type="eggNOG" id="COG1862">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_116157_2_1_4"/>
    <dbReference type="OMA" id="GMEMIIM"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015031">
        <property type="term" value="P:protein transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003849">
        <property type="entry name" value="Preprotein_translocase_YajC"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33909">
        <property type="entry name" value="PTHR33909"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02699">
        <property type="entry name" value="YajC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR01853">
        <property type="entry name" value="YAJCTRNLCASE"/>
    </dbReference>
    <dbReference type="SMART" id="SM01323">
        <property type="entry name" value="YajC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00739">
        <property type="entry name" value="yajC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="10" id="KW-0997">Cell inner membrane</keyword>
    <keyword evidence="6" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="9 10" id="KW-0472">Membrane</keyword>
    <keyword evidence="10" id="KW-0653">Protein transport</keyword>
    <keyword evidence="12" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="10" id="KW-0811">Translocation</keyword>
    <keyword evidence="7 10" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="8 10" id="KW-1133">Transmembrane helix</keyword>
    <keyword evidence="5 10" id="KW-0813">Transport</keyword>
    <feature type="transmembrane region" description="Helical" evidence="10">
        <location>
            <begin position="25"/>
            <end position="43"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004167"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00004377"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00006742"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00014962"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022448"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="RuleBase" id="RU366028"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="EMBL" id="ABX33485.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="111" mass="12104" checksum="887FCDA29CB831F9" modified="2008-01-15" version="1">MFISSAFAQTAPAAAASGGDFMSQLYGMAPLALMFVVLYFVMIRPQMKRQKEHRSMIEALAKGDEVATSGGIIGRVTRMSEQFLHIEIASGVEVQIQRSAVVQVLPKDTLK</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="49" xmlns="http://uniprot.org/uniprot">
    <accession>A9BSF5</accession>
    <name>A9BSF5_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Daci_1124</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="4" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX33769.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_1124"/>
    <dbReference type="PRIDE" id="A9BSF5"/>
    <dbReference type="EnsemblBacteria" id="ABX33769">
        <property type="protein sequence ID" value="ABX33769"/>
        <property type="gene ID" value="Daci_1124"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_1124"/>
    <dbReference type="eggNOG" id="COG3170">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_050822_1_0_4"/>
    <dbReference type="OMA" id="GDLQYDT"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR021457">
        <property type="entry name" value="DUF3108"/>
    </dbReference>
    <dbReference type="Pfam" id="PF11306">
        <property type="entry name" value="DUF3108"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="2" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="21"/>
            <end position="42"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="61"/>
            <end position="188"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Pro residues" evidence="1">
        <location>
            <begin position="62"/>
            <end position="106"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Pro residues" evidence="1">
        <location>
            <begin position="141"/>
            <end position="162"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ABX33769.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="398" mass="41796" checksum="4F71A8A19DBA19FF" modified="2008-01-15" version="1">MGCGWRAALWITDMSLRQRALPALTAVVLGVHALALLGLPLWSQVSAPHTEVAAMQTRALSLPEPPAPPPAAPVPAPKAPAPKPQQPRPKVQRPAPAAPAPTPEPLDTPIRETVEPLPTAAAQEPAASDASETAAAGSGPTPATPPAPPAPKPEPETPPTPSAGPAQGMAITSPDGTPLASDAPVPVQMPDPARLSFAVTGQAKRFNYSASAELVWRHANGQYQASQEVSLFLLGSRSQTSEGRITDRGLEPSRFNDKARKEQSAQLAFDQNLAHFSTGAPDAAIAPGAQDRLSVFLQLSALLAAAPQRYPAGTQISFITVSARRADRWTFRVGETETLDLPSGSTQALRLDKIAAAGDDQQASLWLAPSMQYLPVRIRLAQDNGDFADLQLKGRQAP</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="53" xmlns="http://uniprot.org/uniprot">
    <accession>A9BSK1</accession>
    <name>A9BSK1_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="9">Tripartite ATP-independent periplasmic transporter DctQ component</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="9" type="ordered locus">Daci_1362</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="9 10" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="10" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX34006.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012203292.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_1362"/>
    <dbReference type="PRIDE" id="A9BSK1"/>
    <dbReference type="EnsemblBacteria" id="ABX34006">
        <property type="protein sequence ID" value="ABX34006"/>
        <property type="gene ID" value="Daci_1362"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_1362"/>
    <dbReference type="eggNOG" id="COG3090">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_086356_3_4_4"/>
    <dbReference type="OMA" id="WYSIWLP"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007387">
        <property type="entry name" value="TRAP_DctQ"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR35011">
        <property type="entry name" value="PTHR35011"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04290">
        <property type="entry name" value="DctQ"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="6 8" id="KW-0472">Membrane</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4 8" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="5 8" id="KW-1133">Transmembrane helix</keyword>
    <keyword evidence="2" id="KW-0813">Transport</keyword>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="28"/>
            <end position="49"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="61"/>
            <end position="80"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="101"/>
            <end position="121"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="141"/>
            <end position="160"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="7">
        <location>
            <begin position="1"/>
            <end position="20"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="7">
        <location>
            <begin position="1"/>
            <end position="15"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022448"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="ABX34006.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="181" mass="20127" checksum="9B1302B5A2ECFD27" modified="2008-01-15" version="1">MSSPPTENGAAETPSQPDEPRSLRIEDWLTVVIMALLALITFANVLVRYFTSSSFAWTEEISVFLMILLAMVAGSAAVARNAHIRIEYFAEGGSALRRKRLARFGTLMVALLFAVIAALSVRVVWDDYRFEETSPGIGVPQWWYSMWLPICSALITVRALQLFQRQGRPGAFDDSPGEKAQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="76" xmlns="http://uniprot.org/uniprot">
    <accession>A9BSN3</accession>
    <name>A9BSN3_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="7">Acetyl-CoA acetyltransferase</fullName>
            <ecNumber evidence="7">2.3.1.16</ecNumber>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ordered locus">Daci_1394</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="8" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1 4">Belongs to the thiolase-like superfamily. Thiolase family.</text>
    </comment>
    <dbReference type="EC" id="2.3.1.16" evidence="7"/>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX34038.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012203324.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_1394"/>
    <dbReference type="PRIDE" id="A9BSN3"/>
    <dbReference type="EnsemblBacteria" id="ABX34038">
        <property type="protein sequence ID" value="ABX34038"/>
        <property type="gene ID" value="Daci_1394"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_1394"/>
    <dbReference type="eggNOG" id="COG0183">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_031026_1_1_4"/>
    <dbReference type="OMA" id="AVNRHCA"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003988">
        <property type="term" value="F:acetyl-CoA C-acyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="CDD" id="cd00751">
        <property type="entry name" value="thiolase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.47.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002155">
        <property type="entry name" value="Thiolase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016039">
        <property type="entry name" value="Thiolase-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020615">
        <property type="entry name" value="Thiolase_acyl_enz_int_AS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020610">
        <property type="entry name" value="Thiolase_AS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020617">
        <property type="entry name" value="Thiolase_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020613">
        <property type="entry name" value="Thiolase_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020616">
        <property type="entry name" value="Thiolase_N"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02803">
        <property type="entry name" value="Thiolase_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00108">
        <property type="entry name" value="Thiolase_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF000429">
        <property type="entry name" value="Ac-CoA_Ac_transf"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53901">
        <property type="entry name" value="SSF53901"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01930">
        <property type="entry name" value="AcCoA-C-Actrans"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00098">
        <property type="entry name" value="THIOLASE_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00737">
        <property type="entry name" value="THIOLASE_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00099">
        <property type="entry name" value="THIOLASE_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4 7" id="KW-0012">Acyltransferase</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 4 7" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Thiolase_N" evidence="5">
        <location>
            <begin position="5"/>
            <end position="262"/>
        </location>
    </feature>
    <feature type="domain" description="Thiolase_C" evidence="6">
        <location>
            <begin position="271"/>
            <end position="396"/>
        </location>
    </feature>
    <feature type="active site" description="Acyl-thioester intermediate" evidence="3">
        <location>
            <position position="90"/>
        </location>
    </feature>
    <feature type="active site" description="Proton acceptor" evidence="3">
        <location>
            <position position="349"/>
        </location>
    </feature>
    <feature type="active site" description="Proton acceptor" evidence="3">
        <location>
            <position position="384"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00010982"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="PIRSR" id="PIRSR000429-1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="RuleBase" id="RU003557"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="Pfam" id="PF00108"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="Pfam" id="PF02803"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="ABX34038.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="398" mass="42312" checksum="A4310EF4204E9817" modified="2008-01-15" version="1">MREAVIVSTARTPLTKSHRGEFNVTPAAQLAAFSVKAAVERSGIDPAMIEDLILGCGNPDGFQGRNLGRQTVLRAELPLSIAGTTITRFCASGLQSIAIAAGRIVAEGVDAMLAGGIETISGIRPGNNLPTDMDPWLVEHKPALYMAMIDTADIVARRYGISREDQDAFSLQSQQRTAAAQAADLFKDEIIACATRMAEKNKDTGEITYRDVVATKDNCNRASTTLEGLAKLEPVKGPDQFITAGNASQLSDGSSACVLMEARQAERLGLSPLGAFRGFAVAGCEPDEMGIGPVFAVPKLLARHGLKVEDIDLWELNEAFASQALYCQRKLGIPNERLNVNGGAISIGHPFGMTGARLAGHILLEGRRRKARDASVKWGVVTMCIAGGMGAAGLFEIY</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="54" xmlns="http://uniprot.org/uniprot">
    <accession>A9BSN9</accession>
    <name>A9BSN9_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ordered locus">Daci_1400</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="5" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Periplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the UPF0065 (bug) family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX34044.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012203330.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_1400"/>
    <dbReference type="PRIDE" id="A9BSN9"/>
    <dbReference type="EnsemblBacteria" id="ABX34044">
        <property type="protein sequence ID" value="ABX34044"/>
        <property type="gene ID" value="Daci_1400"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_1400"/>
    <dbReference type="eggNOG" id="COG3181">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_045683_0_0_4"/>
    <dbReference type="OMA" id="PIMYADL"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0042597">
        <property type="term" value="C:periplasmic space"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.190.150">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005064">
        <property type="entry name" value="BUG"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR042100">
        <property type="entry name" value="Bug_dom1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006311">
        <property type="entry name" value="TAT_signal"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR42928">
        <property type="entry name" value="PTHR42928"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03401">
        <property type="entry name" value="TctC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF017082">
        <property type="entry name" value="YflP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51318">
        <property type="entry name" value="TAT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="3">
        <location>
            <begin position="1"/>
            <end position="35"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5002735999" evidence="3">
        <location>
            <begin position="36"/>
            <end position="337"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004418"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00006987"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="ABX34044.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="337" mass="35570" checksum="4E0C07166FD9FBF4" modified="2008-01-15" version="1">MYTRNPASPARPTRRSVLALAAAPLLAGMAGGALAETGWPSKMLRLVVPFPAGGPTDTASRIVGQKLGERLKQTVVVENRPGASGSIAAVQVAKSPADGYTLMMLATPTLLAPHLYKKAGYDTVKDFTPVATVYDLPIVIVVNPTLLPDVTDLKSLIAHAKAQKVALNYTSSGAGSFGHLSMELLKQMAAFDMQHVPYKGGVPAITDTIGGQVPIMYADLVAALPHIQAGKLRAIAVGSPQRVAMLPDTKTIAEQGIKGYDAVSWGGLLAPKGTPKAVVDRIASEVQQILADKDIQEKLLNAGAIAAYQNPAQLGQRIQQDYTRWGQLIRDKGIAVE</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="52" xmlns="http://uniprot.org/uniprot">
    <accession>A9BSS7</accession>
    <name>A9BSS7_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ordered locus">Daci_1438</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="5" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Periplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the UPF0065 (bug) family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX34082.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012203368.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_1438"/>
    <dbReference type="PRIDE" id="A9BSS7"/>
    <dbReference type="EnsemblBacteria" id="ABX34082">
        <property type="protein sequence ID" value="ABX34082"/>
        <property type="gene ID" value="Daci_1438"/>
    </dbReference>
    <dbReference type="GeneID" id="60685979"/>
    <dbReference type="KEGG" id="dac:Daci_1438"/>
    <dbReference type="eggNOG" id="COG3181">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_045683_0_0_4"/>
    <dbReference type="OMA" id="YTFLVGH"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0042597">
        <property type="term" value="C:periplasmic space"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.190.150">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005064">
        <property type="entry name" value="BUG"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR042100">
        <property type="entry name" value="Bug_dom1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR42928">
        <property type="entry name" value="PTHR42928"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03401">
        <property type="entry name" value="TctC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF017082">
        <property type="entry name" value="YflP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="3">
        <location>
            <begin position="1"/>
            <end position="26"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5002732477" evidence="3">
        <location>
            <begin position="27"/>
            <end position="330"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004418"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00006987"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="ABX34082.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="330" mass="35082" checksum="F8278A484F4CB7BE" modified="2008-01-15" version="1">MPFHLPRLPRLALALAATTFALAAHAQGGYPAKPLTWIVPFAAGGPTDAMARDIAQRTSTQLGQQIIIENVPGAGGTIGAAKAARSAPDGYSFLVGHMGYMGAAPSLYKKLAYDPVKDFEAVFRFPDTPLVLLVGKNSPYKTAEELVAFGKQNPGRLNFGNAGVGSTSHLVAALFASRAQMEITQVAYKGAAPAMTDVISGQVDAMFDQTNTALPQLAGERIRAIALTSDKPMPQFPGAAALGQKLLPGFETATWYGIYAPKGTPRDVVQKVYQAYTKALADKAWTDRMAAQGIRLLPADQYAPEALARHTAAEVERWRKVAADAKISLD</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="66" xmlns="http://uniprot.org/uniprot">
    <accession>A9BSU4</accession>
    <name>A9BSU4_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">ATPase associated with various cellular activities AAA_5</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_1661</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX34304.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012203589.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_1661"/>
    <dbReference type="PRIDE" id="A9BSU4"/>
    <dbReference type="EnsemblBacteria" id="ABX34304">
        <property type="protein sequence ID" value="ABX34304"/>
        <property type="gene ID" value="Daci_1661"/>
    </dbReference>
    <dbReference type="GeneID" id="60686150"/>
    <dbReference type="KEGG" id="dac:Daci_1661"/>
    <dbReference type="eggNOG" id="COG0714">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_051820_2_1_4"/>
    <dbReference type="OMA" id="YVYETRE"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016887">
        <property type="term" value="F:ATP hydrolysis activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003593">
        <property type="entry name" value="AAA+_ATPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003959">
        <property type="entry name" value="ATPase_AAA_core"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00004">
        <property type="entry name" value="AAA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00382">
        <property type="entry name" value="AAA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="AAA" evidence="1">
        <location>
            <begin position="25"/>
            <end position="187"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="SMART" id="SM00382"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX34304.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="284" mass="32397" checksum="E0A022F420BF8ED7" modified="2008-01-15" version="1">MKFQGSENYVATQDLMLAVNAAATLQRPLLVKGEPGTGKTMLAEEVAAALDMPLLQWHIKSTTKAQQGLYEYDAVSRLRDSQLSDIDGGERVKDIHNYIIKGVLWQAFTADRPVALLIDEIDKADIEFPNDLLREIDRMEFYCYETREMIRAKHRPLVFITSNNEKELPDAFLRRCFFHYIKFPDADTMRQIVAVHFPKLQGELLTAAMKVFYDVRNLPGLKKKPSTSELIDWLKLLVAEDIPVESLQTAEGKVAVPPLVGALLKNEQDVSLFEKLVFMNQRNR</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="94" xmlns="http://uniprot.org/uniprot">
    <accession>A9BSV7</accession>
    <name>A9BSV7_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="18">Cytochrome c oxidase subunit 2</fullName>
            <ecNumber evidence="18">7.1.1.9</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="23" type="ordered locus">Daci_1674</name>
    </gene>
    <organism evidence="23 24">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="23 24" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="24">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="24" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="24">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="15 18">Subunits I and II form the functional core of the enzyme complex. Electrons originating in cytochrome c are transferred via heme a and Cu(A) to the binuclear center formed by heme a3 and Cu(B).</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="18">
            <text>4 Fe(II)-[cytochrome c] + 8 H(+)(in) + O2 = 4 Fe(III)-[cytochrome c] + 4 H(+)(out) + 2 H2O</text>
            <dbReference type="Rhea" id="RHEA:11436"/>
            <dbReference type="Rhea" id="RHEA-COMP:10350"/>
            <dbReference type="Rhea" id="RHEA-COMP:14399"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:15379"/>
            <dbReference type="ChEBI" id="CHEBI:29033"/>
            <dbReference type="ChEBI" id="CHEBI:29034"/>
            <dbReference type="EC" id="7.1.1.9"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="18">
            <name>Cu cation</name>
            <dbReference type="ChEBI" id="CHEBI:23378"/>
        </cofactor>
        <text evidence="18">Binds a copper A center.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="17">Cell membrane</location>
            <topology evidence="17">Multi-pass membrane protein</topology>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="2">Periplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="3 17">Belongs to the cytochrome c oxidase subunit 2 family.</text>
    </comment>
    <dbReference type="EC" id="7.1.1.9" evidence="18"/>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX34317.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_1674"/>
    <dbReference type="PRIDE" id="A9BSV7"/>
    <dbReference type="EnsemblBacteria" id="ABX34317">
        <property type="protein sequence ID" value="ABX34317"/>
        <property type="gene ID" value="Daci_1674"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_1674"/>
    <dbReference type="eggNOG" id="COG1622">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="eggNOG" id="COG2010">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_036876_2_2_4"/>
    <dbReference type="OMA" id="HAFMPIA"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0042597">
        <property type="term" value="C:periplasmic space"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0070469">
        <property type="term" value="C:respirasome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005507">
        <property type="term" value="F:copper ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004129">
        <property type="term" value="F:cytochrome-c oxidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0020037">
        <property type="term" value="F:heme binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.287.90">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.760.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.40.420">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045187">
        <property type="entry name" value="CcO_II"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002429">
        <property type="entry name" value="CcO_II-like_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001505">
        <property type="entry name" value="Copper_CuA"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008972">
        <property type="entry name" value="Cupredoxin"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009056">
        <property type="entry name" value="Cyt_c-like_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036909">
        <property type="entry name" value="Cyt_c-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014222">
        <property type="entry name" value="Cyt_c_oxidase_su2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011759">
        <property type="entry name" value="Cyt_c_oxidase_su2_TM_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036257">
        <property type="entry name" value="Cyt_c_oxidase_su2_TM_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR22888">
        <property type="entry name" value="PTHR22888"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00116">
        <property type="entry name" value="COX2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02790">
        <property type="entry name" value="COX2_TM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13442">
        <property type="entry name" value="Cytochrome_CBB3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46626">
        <property type="entry name" value="SSF46626"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF49503">
        <property type="entry name" value="SSF49503"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF81464">
        <property type="entry name" value="SSF81464"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR02866">
        <property type="entry name" value="CoxB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00078">
        <property type="entry name" value="COX2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50857">
        <property type="entry name" value="COX2_CUA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50999">
        <property type="entry name" value="COX2_TM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51007">
        <property type="entry name" value="CYTC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="13 18" id="KW-0186">Copper</keyword>
    <keyword evidence="10 17" id="KW-0249">Electron transport</keyword>
    <keyword evidence="5 16" id="KW-0349">Heme</keyword>
    <keyword evidence="12 16" id="KW-0408">Iron</keyword>
    <keyword evidence="14 19" id="KW-0472">Membrane</keyword>
    <keyword evidence="8 16 18" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="24" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="6 17" id="KW-0679">Respiratory chain</keyword>
    <keyword evidence="9" id="KW-1278">Translocase</keyword>
    <keyword evidence="7 17 19" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="11 19" id="KW-1133">Transmembrane helix</keyword>
    <keyword evidence="4 17" id="KW-0813">Transport</keyword>
    <feature type="transmembrane region" description="Helical" evidence="19">
        <location>
            <begin position="40"/>
            <end position="65"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="19">
        <location>
            <begin position="86"/>
            <end position="104"/>
        </location>
    </feature>
    <feature type="domain" description="COX2_TM" evidence="21">
        <location>
            <begin position="19"/>
            <end position="114"/>
        </location>
    </feature>
    <feature type="domain" description="COX2_CUA" evidence="20">
        <location>
            <begin position="115"/>
            <end position="258"/>
        </location>
    </feature>
    <feature type="domain" description="Cytochrome c" evidence="22">
        <location>
            <begin position="278"/>
            <end position="356"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00004418"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00007866"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022448"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022617"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022660"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00022967"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00022982"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="12">
        <source>
            <dbReference type="ARBA" id="ARBA00023004"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="13">
        <source>
            <dbReference type="ARBA" id="ARBA00023008"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="14">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="15">
        <source>
            <dbReference type="ARBA" id="ARBA00024688"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="16">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00433"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="17">
        <source>
            <dbReference type="RuleBase" id="RU000456"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="18">
        <source>
            <dbReference type="RuleBase" id="RU004024"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="19">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="20">
        <source>
            <dbReference type="PROSITE" id="PS50857"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="21">
        <source>
            <dbReference type="PROSITE" id="PS50999"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="22">
        <source>
            <dbReference type="PROSITE" id="PS51007"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="23">
        <source>
            <dbReference type="EMBL" id="ABX34317.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="24">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="380" mass="41427" checksum="61CAFC038E8365ED" modified="2008-01-15" version="1">MSVAGGGSLAHATTDLPGGPAVNQLNLHPAVTRIAHEQHYLHWMMLIICTVIFIGVFAVMFYSIWKHRKSRGAKAANFHESATVEVVWTIVPFIIVVLMALPATKVLVAQKDTTNADVTIKATGYQWKWGYDYINGEGEGLSFISTLDSSHRALSDSGDVSKAPNDYLLKVDNPLVVPVDRKVRIITTANDVIHSFMVPSFGIKQDAIPGFVRDTWFRAEKTGDYYGQCAELCGKEHAYMPIHVKVLSSDGYKAWVDEQRKIAAAKKDDPSKVWSLPDLMARGEKVYAANCAACHQANGKGAGPIKPLDGSPIVLGPTAEMMHVVLEGRANGAMPAWKQLSDTELAAVVTFAKNHWSNKTGQLVQPAEFVAARTGKFPGQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="66" xmlns="http://uniprot.org/uniprot">
    <accession>A9BSW6</accession>
    <name>A9BSW6_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Electron transport protein SCO1/SenC</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ordered locus">Daci_1683</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="6" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the SCO1/2 family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX34326.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012203611.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_1683"/>
    <dbReference type="PRIDE" id="A9BSW6"/>
    <dbReference type="EnsemblBacteria" id="ABX34326">
        <property type="protein sequence ID" value="ABX34326"/>
        <property type="gene ID" value="Daci_1683"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_1683"/>
    <dbReference type="eggNOG" id="COG1999">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_050131_3_0_4"/>
    <dbReference type="OMA" id="FELNGWM"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="CDD" id="cd02968">
        <property type="entry name" value="SCO"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003782">
        <property type="entry name" value="SCO1/SenC"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036249">
        <property type="entry name" value="Thioredoxin-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013766">
        <property type="entry name" value="Thioredoxin_domain"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR12151">
        <property type="entry name" value="PTHR12151"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02630">
        <property type="entry name" value="SCO1-SenC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52833">
        <property type="entry name" value="SSF52833"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51352">
        <property type="entry name" value="THIOREDOXIN_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2" id="KW-0186">Copper</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="3">
        <location>
            <begin position="1"/>
            <end position="21"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5002732483" evidence="3">
        <location>
            <begin position="22"/>
            <end position="204"/>
        </location>
    </feature>
    <feature type="domain" description="Thioredoxin" evidence="4">
        <location>
            <begin position="38"/>
            <end position="204"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00010996"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023008"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="PROSITE" id="PS51352"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="ABX34326.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="204" mass="22131" checksum="B2503DCD7446708A" modified="2008-01-15" version="1">MNKRTALRVLGLTAMAWGALALSGCSREAKTSFQGVDVTGAEYAKDIPLRDVDGKQRSIKDFAGKVVVVFFGYTQCPDVCPTTLQELVEVKQQLGADGDRLQGVFVTLDPERDTPEVLKAYLGNFDPGFVGLHGTPDETAAVAKDFKLFYKKVPGKTEGAYTLDHSAGSYVYDTAGRLRVYERYGGGPQVLGADVKALLQEKRS</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2020-08-12" version="35" xmlns="http://uniprot.org/uniprot">
    <accession>A9BT21</accession>
    <name>A9BT21_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_1738</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX34381.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_1738"/>
    <dbReference type="EnsemblBacteria" id="ABX34381">
        <property type="protein sequence ID" value="ABX34381"/>
        <property type="gene ID" value="Daci_1738"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_1738"/>
    <dbReference type="eggNOG" id="ENOG5033DCJ">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_168125_0_0_4"/>
    <dbReference type="OMA" id="HMHADSA"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="1">
        <location>
            <begin position="1"/>
            <end position="22"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5002735065" evidence="1">
        <location>
            <begin position="23"/>
            <end position="114"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX34381.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="114" mass="12391" checksum="47446EF40F482322" modified="2008-01-15" version="1">MRKSLILVAVLFGMLWQSLAIAGSAVYGEDFEHTLMHWSEAGHHHHDDGSFHEADSDDASQHVALDAVLSLSALLPSMSLSLPPADAGQVLTLHDAAFPSPSPHRLRRPPRLLL</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="42" xmlns="http://uniprot.org/uniprot">
    <accession>A9BT34</accession>
    <name>A9BT34_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Daci_1752</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="2" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX34394.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012203679.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_1752"/>
    <dbReference type="PRIDE" id="A9BT34"/>
    <dbReference type="EnsemblBacteria" id="ABX34394">
        <property type="protein sequence ID" value="ABX34394"/>
        <property type="gene ID" value="Daci_1752"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_1752"/>
    <dbReference type="eggNOG" id="ENOG5033G5T">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_1728389_0_0_4"/>
    <dbReference type="OMA" id="LSITHEM"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045390">
        <property type="entry name" value="DUF6521"/>
    </dbReference>
    <dbReference type="Pfam" id="PF20131">
        <property type="entry name" value="DUF6521"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ABX34394.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="151" mass="16605" checksum="5A06F981F3CF5DA4" modified="2008-01-15" version="1">MSTLSTNELLGAVALQTALQYAPDRRLPLSKAFLVLPLLFDRSIRKILKDQRSAIVSCKDLILSHPEAFTTVSARFSDLSLTSLNTILLACEMGMTQLVNSEIVLEKVFFDDNKPARVGKTASDIMGAGPHLATLLREPAVDLYQTFRIAL</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="68" xmlns="http://uniprot.org/uniprot">
    <accession>A9BT89</accession>
    <name>A9BT89_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="6">Porin, gram-negative type</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ordered locus">Daci_2014</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="7" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX34654.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_2014"/>
    <dbReference type="PRIDE" id="A9BT89"/>
    <dbReference type="EnsemblBacteria" id="ABX34654">
        <property type="protein sequence ID" value="ABX34654"/>
        <property type="gene ID" value="Daci_2014"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_2014"/>
    <dbReference type="eggNOG" id="COG3203">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_038238_1_1_4"/>
    <dbReference type="OMA" id="YLVFAHI"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046930">
        <property type="term" value="C:pore complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015288">
        <property type="term" value="F:porin activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006811">
        <property type="term" value="P:ion transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd00342">
        <property type="entry name" value="gram_neg_porins"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.160.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR033900">
        <property type="entry name" value="Gram_neg_porin_domain"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023614">
        <property type="entry name" value="Porin_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002299">
        <property type="entry name" value="Porin_Neis"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13609">
        <property type="entry name" value="Porin_4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00184">
        <property type="entry name" value="NEISSPPORIN"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-0406">Ion transport</keyword>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-0626">Porin</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1134">Transmembrane beta strand</keyword>
    <keyword evidence="4" id="KW-0813">Transport</keyword>
    <feature type="domain" description="Porin_4" evidence="5">
        <location>
            <begin position="65"/>
            <end position="403"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022452"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023065"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023114"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="Pfam" id="PF13609"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="ABX34654.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="454" mass="47202" checksum="17233E8AB161B9FB" modified="2008-01-15" version="1">MATLTRATRACRELQSRWHELPRSGAMAFLESIRGAGPRQPHDEQETPMPRLHPHPCGLHALGLLCLAGAAAAQAPTSVTLFGVMDAGISRYSVRSDSWDAGPARSARQSTWALSPSGNLASRIGIRASEDLGGGLMAGLWLEAPVANDTGGGALNFGRRATISLSGRLGELRMGRDHTPSFLNDWAFDPFTVNGVGTNLIAVVNSNLAIARALATGGLLGGGLSAGTDTYLRAGNSIGYFLPPGLGGVYGQAMYAFPENSSKRGRYAGARIGWAMGAADVALGYGENTLGTSGAGAEKIRSLNLGGSYDFGPVKLFGEWSGVRNERRDAGTLAAINDRYLGVLAGVNIPVGQGALRASYARVQFRNGQGLADGDSSVNKLALGYVHPLSKRTALYATVSRISVGNGRNNPGVMGVTPLVVSNPAILPQPGYLTTGGMQPAGALGLDLGLRLMF</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="72" xmlns="http://uniprot.org/uniprot">
    <accession>A9BTH9</accession>
    <name>A9BTH9_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="6">Inositol-1-monophosphatase</fullName>
            <ecNumber evidence="6">3.1.3.25</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="7" type="ordered locus">Daci_2309</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="8" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="1 6">
            <text>a myo-inositol phosphate + H2O = myo-inositol + phosphate</text>
            <dbReference type="Rhea" id="RHEA:24056"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:17268"/>
            <dbReference type="ChEBI" id="CHEBI:43474"/>
            <dbReference type="ChEBI" id="CHEBI:84139"/>
            <dbReference type="EC" id="3.1.3.25"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="2 6">
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </cofactor>
    </comment>
    <comment type="similarity">
        <text evidence="3 6">Belongs to the inositol monophosphatase superfamily.</text>
    </comment>
    <dbReference type="EC" id="3.1.3.25" evidence="6"/>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX34947.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012204229.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_2309"/>
    <dbReference type="PRIDE" id="A9BTH9"/>
    <dbReference type="EnsemblBacteria" id="ABX34947">
        <property type="protein sequence ID" value="ABX34947"/>
        <property type="gene ID" value="Daci_2309"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_2309"/>
    <dbReference type="eggNOG" id="COG0483">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_044118_0_0_4"/>
    <dbReference type="OMA" id="VHQELEF"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008934">
        <property type="term" value="F:inositol monophosphate 1-phosphatase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0052832">
        <property type="term" value="F:inositol monophosphate 3-phosphatase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0052833">
        <property type="term" value="F:inositol monophosphate 4-phosphatase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046855">
        <property type="term" value="P:inositol phosphate dephosphorylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046854">
        <property type="term" value="P:phosphatidylinositol phosphate biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd01639">
        <property type="entry name" value="IMPase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR033942">
        <property type="entry name" value="IMPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020583">
        <property type="entry name" value="Inositol_monoP_metal-BS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000760">
        <property type="entry name" value="Inositol_monophosphatase-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020550">
        <property type="entry name" value="Inositol_monophosphatase_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR022337">
        <property type="entry name" value="Inositol_monophosphatase_SuhB"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00459">
        <property type="entry name" value="Inositol_P"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00377">
        <property type="entry name" value="IMPHPHTASES"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR01959">
        <property type="entry name" value="SBIMPHPHTASE"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00629">
        <property type="entry name" value="IMP_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00630">
        <property type="entry name" value="IMP_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="6 7" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="5 6" id="KW-0460">Magnesium</keyword>
    <keyword evidence="4 6" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001033"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00001946"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00009759"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022842"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="RuleBase" id="RU364068"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="ABX34947.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="304" mass="32456" checksum="FDFA8ADEBD896957" modified="2008-01-15" version="1">MSTNLHPMLNVAIKAARAAGAIINRAALDVESVRVAQKQVNDFVTEVDKAAEQAIIETLLGAYPGHGILAEESGNEFGAKNSDYVWIIDPLDGTTNFIHGFPVYCVSIALSFKGKVEHAVVYDPSRNDLFTATRGRGAYLNDRRIRVSKRIQLKDSLISTGFPFRRGDNFKQYMNMLGDVMQETAGVRRPGAAALDLAYVAAGFADGFFESGLQIWDVAAGSLLVTEAGGLVGNFTGEADFLEQKECLAGNPRIYGALVGIVGKYSKFASAGEKAGVRQALADSGEAAPVADAETAESEQQPEA</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="59" xmlns="http://uniprot.org/uniprot">
    <accession>A9BTQ3</accession>
    <name>A9BTQ3_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="9">Transposase Tn3 family protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="9" type="ordered locus">Daci_2679</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="9 10" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="10" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the transposase 7 family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX35317.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012204554.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_2679"/>
    <dbReference type="PRIDE" id="A9BTQ3"/>
    <dbReference type="EnsemblBacteria" id="ABX35317">
        <property type="protein sequence ID" value="ABX35317"/>
        <property type="gene ID" value="Daci_2679"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_2679"/>
    <dbReference type="eggNOG" id="COG4644">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_009098_1_0_4"/>
    <dbReference type="OMA" id="SENHIRY"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004803">
        <property type="term" value="F:transposase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006313">
        <property type="term" value="P:transposition, DNA-mediated"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025296">
        <property type="entry name" value="DUF4158"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002513">
        <property type="entry name" value="Tn3_Tnp_DDE_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01526">
        <property type="entry name" value="DDE_Tnp_Tn3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13700">
        <property type="entry name" value="DUF4158"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-0233">DNA recombination</keyword>
    <keyword evidence="4" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0814">Transposable element</keyword>
    <keyword evidence="3" id="KW-0815">Transposition</keyword>
    <feature type="domain" description="DUF4158" evidence="8">
        <location>
            <begin position="6"/>
            <end position="169"/>
        </location>
    </feature>
    <feature type="domain" description="DDE_Tnp_Tn3" evidence="7">
        <location>
            <begin position="581"/>
            <end position="968"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="6">
        <location>
            <begin position="673"/>
            <end position="698"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00009402"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022464"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022578"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023172"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="Pfam" id="PF01526"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="Pfam" id="PF13700"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="ABX35317.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="990" mass="111056" checksum="FF57C2F2BBB5C637" modified="2008-01-15" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="58" xmlns="http://uniprot.org/uniprot">
    <accession>A9BTR9</accession>
    <name>A9BTR9_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="3">P-type conjugative transfer protein TrbJ</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Daci_2695</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="4" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX35333.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012204561.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_2695"/>
    <dbReference type="PRIDE" id="A9BTR9"/>
    <dbReference type="EnsemblBacteria" id="ABX35333">
        <property type="protein sequence ID" value="ABX35333"/>
        <property type="gene ID" value="Daci_2695"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_2695"/>
    <dbReference type="eggNOG" id="COG5314">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_065326_1_0_4"/>
    <dbReference type="OMA" id="AYDVQSI"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014147">
        <property type="entry name" value="T4SS_TrbJ"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR02780">
        <property type="entry name" value="TrbJ_Ti"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="2">
        <location>
            <begin position="1"/>
            <end position="27"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5002733070" evidence="2">
        <location>
            <begin position="28"/>
            <end position="251"/>
        </location>
    </feature>
    <feature type="coiled-coil region" evidence="1">
        <location>
            <begin position="45"/>
            <end position="79"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ABX35333.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="251" mass="27467" checksum="B001FE92D9CC18BB" modified="2008-01-15" version="1">MKTHASKLAALTAACVLAFGIAQPAHALFGVGDIVLDPTNLVQNTLTAVRTLEQINNQIRQLQNEAQMLINQARNLASLPSSVVGQLRANLATTQRLIAQAKGLAYDVTSIDREFARLYPEKYAATVSGNQIYLDAQERWKNTLNGLQTTMQMQAQASQNLSDDESVLADLVGKSQSAEGALQAMQAMNQLLALQAKQSIQTQRLQITQDRAASLELARQAAATERGREVTRRFLGEGTPYTPQPVNFYNR</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="54" xmlns="http://uniprot.org/uniprot">
    <accession>A9BTZ3</accession>
    <name>A9BTZ3_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ordered locus">Daci_2769</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="5" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Periplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the UPF0065 (bug) family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX35407.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012204617.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_2769"/>
    <dbReference type="PRIDE" id="A9BTZ3"/>
    <dbReference type="EnsemblBacteria" id="ABX35407">
        <property type="protein sequence ID" value="ABX35407"/>
        <property type="gene ID" value="Daci_2769"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_2769"/>
    <dbReference type="eggNOG" id="COG3181">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_045683_0_0_4"/>
    <dbReference type="OMA" id="YKSARYD"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0042597">
        <property type="term" value="C:periplasmic space"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.190.150">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005064">
        <property type="entry name" value="BUG"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR042100">
        <property type="entry name" value="Bug_dom1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR42928">
        <property type="entry name" value="PTHR42928"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03401">
        <property type="entry name" value="TctC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF017082">
        <property type="entry name" value="YflP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="3">
        <location>
            <begin position="1"/>
            <end position="20"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5002735804" evidence="3">
        <location>
            <begin position="21"/>
            <end position="322"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004418"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00006987"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="ABX35407.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="322" mass="33422" checksum="79D33AD78E1400B8" modified="2008-01-15" version="1">MFKRFALSLLLAGLAGGAMAQSYPARPVTLVVGFPPGGGADAVARIVADKVGKILGQPLLVDNRPGAGTTLASEHVARAAPDGYTLLLGSANIYGSDQLLYKSARYDGARNFTGITRWSSAPMLLAVRKDFPGQGVGDLVALARSQPDKLSYSSSGAGVITHLATLSFAGASGGLRMLHVPFKGGAPSIQAVAAGDVDLTFGTPPSVLPLAQAGKLRMLAVSTAERSPLFPELPGMKESGVPGFDYTFWFGLFAPAGLPEEVARKLFDASTKALEDPDVKARLAKQGNLAAPSASLEEFRAWALKEGQESKALTQRSGAGLQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-01-19" version="59" xmlns="http://uniprot.org/uniprot">
    <accession>A9BU57</accession>
    <name>A9BU57_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Oxidoreductase molybdopterin binding</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_3134</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX35772.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012204973.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_3134"/>
    <dbReference type="EnsemblBacteria" id="ABX35772">
        <property type="protein sequence ID" value="ABX35772"/>
        <property type="gene ID" value="Daci_3134"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_3134"/>
    <dbReference type="eggNOG" id="COG2041">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_045520_2_0_4"/>
    <dbReference type="OMA" id="CADRYYS"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.420.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000572">
        <property type="entry name" value="OxRdtase_Mopterin-bd_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036374">
        <property type="entry name" value="OxRdtase_Mopterin-bd_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00174">
        <property type="entry name" value="Oxidored_molyb"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56524">
        <property type="entry name" value="SSF56524"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Oxidored_molyb" evidence="1">
        <location>
            <begin position="113"/>
            <end position="252"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF00174"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX35772.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="263" mass="29471" checksum="35BD7F7ACD28D782" modified="2008-01-15" version="1">MKIFKVPSLPGVDGEAVVREARSLIVRKLDQPARRAFLQRSLTLGGLSLLTGCSISDDSHVEAALSQVSRFNDRMQGLLFSPTRLAPTYSAAEITRPFPFNAYYGEDEVREVDGASWRLEVTGMVADRHAWTLAELRAMPQDEQITRHICVEGWSAIGRWGGVRFADFLRHIGADTSAKYVGFKCVDDYFTSIDMATALHPQTLMALTYDGQPLPPKYGFPMKLRMPTKLGYKNPKHIQAMFVTNTYSGGYWEDQGYNWFGGS</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-05-25" version="83" xmlns="http://uniprot.org/uniprot">
    <accession>A9BUB6</accession>
    <name>A9BUB6_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="8">MIP family channel protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="8" type="ordered locus">Daci_1174</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="9" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="6">Belongs to the MIP/aquaporin (TC 1.A.8) family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX33819.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012203105.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_1174"/>
    <dbReference type="EnsemblBacteria" id="ABX33819">
        <property type="protein sequence ID" value="ABX33819"/>
        <property type="gene ID" value="Daci_1174"/>
    </dbReference>
    <dbReference type="GeneID" id="60685742"/>
    <dbReference type="KEGG" id="dac:Daci_1174"/>
    <dbReference type="eggNOG" id="COG0580">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_020019_3_2_4"/>
    <dbReference type="OMA" id="IFKALMY"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015267">
        <property type="term" value="F:channel activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd00333">
        <property type="entry name" value="MIP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.1080.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023271">
        <property type="entry name" value="Aquaporin-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR034294">
        <property type="entry name" value="Aquaporin_transptr"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000425">
        <property type="entry name" value="MIP"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR022357">
        <property type="entry name" value="MIP_CS"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR45724">
        <property type="entry name" value="PTHR45724"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00230">
        <property type="entry name" value="MIP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00783">
        <property type="entry name" value="MINTRINSICP"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF81338">
        <property type="entry name" value="SSF81338"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00861">
        <property type="entry name" value="MIP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00221">
        <property type="entry name" value="MIP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5 7" id="KW-0472">Membrane</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 6 7" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="4 7" id="KW-1133">Transmembrane helix</keyword>
    <keyword evidence="2 6" id="KW-0813">Transport</keyword>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="12"/>
            <end position="32"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="39"/>
            <end position="58"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="88"/>
            <end position="108"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="128"/>
            <end position="151"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="158"/>
            <end position="181"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="201"/>
            <end position="224"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022448"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="RuleBase" id="RU000477"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="ABX33819.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="234" mass="23460" checksum="E4A752D7CE997F66" modified="2008-01-15" version="1">MHSSVQKWSAEFLGTLWLTLGGCGAAVLAAAFPQVGIGLVGVSLAFGLTVLTGAYAFGPISGGHFNPAVSVGLAMGGRFAWSELPGYIVSQVLGAITGAAILYVIATGKAGADIGGFATNGYGAHSPGGYGMTAALVTEVVMTAFFILVILGATAKRAAAGFGGLAIGLCLTLIHLISIPVTNTSVNPARSTGPALFGPEIAISQLWLFWVAPIVGALIGAVIYKALLANPANE</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-01-19" version="73" xmlns="http://uniprot.org/uniprot">
    <accession>A9BUI3</accession>
    <name>A9BUI3_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="6">Binding-protein-dependent transport systems inner membrane component</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ordered locus">Daci_1242</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="7" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="4">Cell membrane</location>
            <topology evidence="4">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="4">Belongs to the binding-protein-dependent transport system permease family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX33886.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012203172.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_1242"/>
    <dbReference type="EnsemblBacteria" id="ABX33886">
        <property type="protein sequence ID" value="ABX33886"/>
        <property type="gene ID" value="Daci_1242"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_1242"/>
    <dbReference type="eggNOG" id="COG1173">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_028518_2_2_4"/>
    <dbReference type="OMA" id="IGFNYIF"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0055085">
        <property type="term" value="P:transmembrane transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd06261">
        <property type="entry name" value="TM_PBP2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.3720.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000515">
        <property type="entry name" value="MetI-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035906">
        <property type="entry name" value="MetI-like_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00528">
        <property type="entry name" value="BPD_transp_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF161098">
        <property type="entry name" value="SSF161098"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50928">
        <property type="entry name" value="ABC_TM1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3 4" id="KW-0472">Membrane</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1 4" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="2 4" id="KW-1133">Transmembrane helix</keyword>
    <keyword evidence="4" id="KW-0813">Transport</keyword>
    <feature type="transmembrane region" description="Helical" evidence="4">
        <location>
            <begin position="30"/>
            <end position="53"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="4">
        <location>
            <begin position="104"/>
            <end position="127"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="4">
        <location>
            <begin position="139"/>
            <end position="159"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="4">
        <location>
            <begin position="171"/>
            <end position="188"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="4">
        <location>
            <begin position="223"/>
            <end position="244"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="4">
        <location>
            <begin position="279"/>
            <end position="300"/>
        </location>
    </feature>
    <feature type="domain" description="ABC transmembrane type-1" evidence="5">
        <location>
            <begin position="100"/>
            <end position="300"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="RuleBase" id="RU363032"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="PROSITE" id="PS50928"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="ABX33886.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="312" mass="33448" checksum="A3B924DE9BDD68D5" modified="2008-01-15" version="1">MTDSAKQAIPPTGWRASDSPVKRAFARSRLVQAAALVLALIVAATLLSPWLAWQNPFDPANLDLMDAFTPPGQAGTSGTLYALGSDDQGRDVWSAILYGLRMSVLVGVSAVGLSLLIGVPLGLVCGYAGGWFDTLMMRIADVQLTFPVILVALLVFGIARGLLPEGYRDDMAVFVIIVAIGLSDWVQYARTVRGAVMVEKHKDYVLAAQLIGRSRVAILVRHILPNLLAPILVIATISFAHAIVAESTLSYLGVGLPPTQPSLGTLIRIGQGFLFSGEWWILLFPSLVLLALALSVNLVGDWLRDALNPKLQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="57" xmlns="http://uniprot.org/uniprot">
    <accession>A9BUS6</accession>
    <name>A9BUS6_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">AraR_C domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_1540</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX34184.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_1540"/>
    <dbReference type="PRIDE" id="A9BUS6"/>
    <dbReference type="EnsemblBacteria" id="ABX34184">
        <property type="protein sequence ID" value="ABX34184"/>
        <property type="gene ID" value="Daci_1540"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_1540"/>
    <dbReference type="eggNOG" id="COG4111">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_067794_0_0_4"/>
    <dbReference type="OMA" id="GHRTLQS"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045830">
        <property type="entry name" value="AraR_wHTH_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011213">
        <property type="entry name" value="NMN_biosyn"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015797">
        <property type="entry name" value="NUDIX_hydrolase-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036390">
        <property type="entry name" value="WH_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF19368">
        <property type="entry name" value="AraR_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF019423">
        <property type="entry name" value="NMN_biosyn"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46785">
        <property type="entry name" value="SSF46785"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55811">
        <property type="entry name" value="SSF55811"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="AraR_C" evidence="1">
        <location>
            <begin position="255"/>
            <end position="322"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF19368"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX34184.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="344" mass="37975" checksum="954A07BD19E4725B" modified="2008-01-15" version="1">MAVCCAGLEAAPATHHNHPSRQPTSLTFVPHPTSPAASPIHAELVAVLAAVTQGTPRVLTTADGQLLPAGPFEVGHRSLQAGLRAWVEEQTHHPLGYMEQLYTFADGDRTDASGARVISVSYLGLTRESADRSAGQAVWQDWYRYFPWEDWRGGEPALLRSHIAPRLHAWMAEARGAQRALRRQRADIAFGLDGGPWNEDMVLQRYELLYEAGLVQEAAHRVHGAAAMLPGEAMHHDHRRILATGMARLRAKIKYRPVVFELMPPEFTLLQLQQTVEALAGRGLHKQNFRRLIEQQDLVEETGQLTVGSAGRPAKLFRFRSDVLLERAISGSKLPLAKGIDGSP</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="52" xmlns="http://uniprot.org/uniprot">
    <accession>A9BUX5</accession>
    <name>A9BUX5_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Class II aldolase/adducin family protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_1795</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX34437.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_1795"/>
    <dbReference type="PRIDE" id="A9BUX5"/>
    <dbReference type="EnsemblBacteria" id="ABX34437">
        <property type="protein sequence ID" value="ABX34437"/>
        <property type="gene ID" value="Daci_1795"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_1795"/>
    <dbReference type="eggNOG" id="COG0235">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_006033_0_0_4"/>
    <dbReference type="OMA" id="FEGITIH"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.225.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001303">
        <property type="entry name" value="Aldolase_II/adducin_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036409">
        <property type="entry name" value="Aldolase_II/adducin_N_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00596">
        <property type="entry name" value="Aldolase_II"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM01007">
        <property type="entry name" value="Aldolase_II"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53639">
        <property type="entry name" value="SSF53639"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Aldolase_II" evidence="1">
        <location>
            <begin position="39"/>
            <end position="223"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="SMART" id="SM01007"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX34437.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="277" mass="30736" checksum="B79197DC139138C9" modified="2008-01-15" version="1">MPDFPTSHCTTHLKTHLRIHPTSHTMNCSMHPDERAARIELAACYRVFAMLGWDELIYNHITVRLPDSVTGGEKQFLINPFGLHYEEVTASNLVRINVRGEVLDGSRHPVNPAGFVVHAAIHDGLPGAHCVMHTHTTSGMGVACLEQGLSQSNFYSAQLHGMVAYHDFEGITIHADEGPRLLASIGRRKAVILRNHGLLSWGSDLPQAFVVLWTLQRACDVQMATLSMGAPRMVSDAMAQRCNEDSLTFNASHGGARDVFDHLVRRVNRRDNSYLDL</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="58" xmlns="http://uniprot.org/uniprot">
    <accession>A9BVB8</accession>
    <name>A9BVB8_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Basic membrane lipoprotein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ordered locus">Daci_2142</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="5" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX34782.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012204065.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_2142"/>
    <dbReference type="PRIDE" id="A9BVB8"/>
    <dbReference type="EnsemblBacteria" id="ABX34782">
        <property type="protein sequence ID" value="ABX34782"/>
        <property type="gene ID" value="Daci_2142"/>
    </dbReference>
    <dbReference type="GeneID" id="60686537"/>
    <dbReference type="KEGG" id="dac:Daci_2142"/>
    <dbReference type="eggNOG" id="COG1744">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_038813_2_0_4"/>
    <dbReference type="OMA" id="PYTNMPD"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003760">
        <property type="entry name" value="PnrA-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006311">
        <property type="entry name" value="TAT_signal"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02608">
        <property type="entry name" value="Bmp"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51318">
        <property type="entry name" value="TAT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-0449">Lipoprotein</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1 2" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="2">
        <location>
            <begin position="1"/>
            <end position="24"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5002736092" evidence="2">
        <location>
            <begin position="25"/>
            <end position="385"/>
        </location>
    </feature>
    <feature type="domain" description="Bmp" evidence="3">
        <location>
            <begin position="52"/>
            <end position="325"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022729"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF02608"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="ABX34782.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="385" mass="41037" checksum="1297BA54A7A7595E" modified="2008-01-15" version="1">MTDLHKRSLIKVAALSAVAAAALAGCGKKEEAAPAPAPVAEAPAAAATEPLKIAFAYVGPVGDGGYTFAHDQGRLALEKEFGDKIKTSYVESVPEGADAERVLRDMAANGNKLVFGTTFGYMEPIQKIAPDFPDVKFEHATGYKTAANVSTYDSRTYEGAYLAGIIAGSMTKSNVLGVVGSVPIPEVLRNINSFTLGAQSMNPKIKTKVVWVNEWFAPPKETEAATSLINGGADILFQNTDSAAVLKTAEEKGKRAFGWDSDMTAYGPKAHLGSAIINWTPYYTKTVREMLDGKWSSQQTWWGVKEGAIDIVSLADDVPAEAKAKIEEVKKGLKDGTFHIWKGPIAGQDGKELLAADAVAEDKFLTGINFYVKGVEGKVPGQDSK</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="86" xmlns="http://uniprot.org/uniprot">
    <accession>A9BVG6</accession>
    <name>A9BVG6_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="12">ABC transporter, CydDC cysteine exporter (CydDC-E) family, permease/ATP-binding protein CydD</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="12" type="ordered locus">Daci_2395</name>
    </gene>
    <organism evidence="12 13">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="12 13" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="13">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="13" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="13">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="8">Lacks conserved residue(s) required for the propagation of feature annotation.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX35033.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_2395"/>
    <dbReference type="PRIDE" id="A9BVG6"/>
    <dbReference type="EnsemblBacteria" id="ABX35033">
        <property type="protein sequence ID" value="ABX35033"/>
        <property type="gene ID" value="Daci_2395"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_2395"/>
    <dbReference type="eggNOG" id="COG4988">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_000604_84_9_4"/>
    <dbReference type="OMA" id="FPLNWAA"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0140359">
        <property type="term" value="F:ABC-type transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0042883">
        <property type="term" value="P:cysteine transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.1560.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003593">
        <property type="entry name" value="AAA+_ATPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011527">
        <property type="entry name" value="ABC1_TM_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036640">
        <property type="entry name" value="ABC1_TM_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003439">
        <property type="entry name" value="ABC_transporter-like_ATP-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017871">
        <property type="entry name" value="ABC_transporter-like_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014216">
        <property type="entry name" value="ABC_transptr_CydD"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR039421">
        <property type="entry name" value="Type_1_exporter"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR24221">
        <property type="entry name" value="PTHR24221"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00664">
        <property type="entry name" value="ABC_membrane"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00005">
        <property type="entry name" value="ABC_tran"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00382">
        <property type="entry name" value="AAA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF90123">
        <property type="entry name" value="SSF90123"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR02857">
        <property type="entry name" value="CydD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50929">
        <property type="entry name" value="ABC_TM1F"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00211">
        <property type="entry name" value="ABC_TRANSPORTER_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50893">
        <property type="entry name" value="ABC_TRANSPORTER_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4 8 12" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="1" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="7 9" id="KW-0472">Membrane</keyword>
    <keyword evidence="3 8" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="13" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="5" id="KW-1278">Translocase</keyword>
    <keyword evidence="2 9" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="6 9" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="9">
        <location>
            <begin position="162"/>
            <end position="182"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="9">
        <location>
            <begin position="242"/>
            <end position="265"/>
        </location>
    </feature>
    <feature type="domain" description="ABC transmembrane type-1" evidence="11">
        <location>
            <begin position="26"/>
            <end position="313"/>
        </location>
    </feature>
    <feature type="domain" description="ABC transporter" evidence="10">
        <location>
            <begin position="348"/>
            <end position="564"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022967"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00434"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="10">
        <source>
            <dbReference type="PROSITE" id="PS50893"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="11">
        <source>
            <dbReference type="PROSITE" id="PS50929"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="EMBL" id="ABX35033.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="13">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="565" mass="59220" checksum="4ADF967C3430EC78" modified="2008-01-15" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="63" xmlns="http://uniprot.org/uniprot">
    <accession>A9BVN0</accession>
    <name>A9BVN0_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Peptide chain release factor H</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ordered locus">Daci_2459</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="5" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the prokaryotic/mitochondrial release factor family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX35097.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012204378.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_2459"/>
    <dbReference type="PRIDE" id="A9BVN0"/>
    <dbReference type="EnsemblBacteria" id="ABX35097">
        <property type="protein sequence ID" value="ABX35097"/>
        <property type="gene ID" value="Daci_2459"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_2459"/>
    <dbReference type="eggNOG" id="COG1186">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_036856_4_0_4"/>
    <dbReference type="OMA" id="HKRKNWF"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003747">
        <property type="term" value="F:translation release factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000352">
        <property type="entry name" value="Pep_chain_release_fac_I"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045853">
        <property type="entry name" value="Pep_chain_release_fac_I_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017509">
        <property type="entry name" value="Release_fac_PrfH"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00472">
        <property type="entry name" value="RF-1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF75620">
        <property type="entry name" value="SSF75620"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR03072">
        <property type="entry name" value="release_prfH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="RF_PROK_I" evidence="3">
        <location>
            <begin position="108"/>
            <end position="188"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="172"/>
            <end position="199"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="2">
        <location>
            <begin position="180"/>
            <end position="199"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00010835"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF00472"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="ABX35097.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="199" mass="21864" checksum="E8153348138951B5" modified="2008-01-15" version="1">MLLIQLTASHGPAECEHAVRLTLRELLRDCAASGIAVDVLEETPTPAGYKSVLLRCEGDTGLLHGTLGAWLGTIQWVFDSPLRPHHPRRNWFVAVQKCEPPRQLPADGEIVFQACKASGKGGQHVNTTDSAVHALHVPSGISVKVMSERSQHANKRLARELLALKLARLNAQGEGQARRTRSQQHWEVERGSPVKVFRA</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="65" xmlns="http://uniprot.org/uniprot">
    <accession>A9BVY6</accession>
    <name>A9BVY6_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">FAD-dependent pyridine nucleotide-disulphide oxidoreductase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_2861</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX35499.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012204709.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_2861"/>
    <dbReference type="PRIDE" id="A9BVY6"/>
    <dbReference type="EnsemblBacteria" id="ABX35499">
        <property type="protein sequence ID" value="ABX35499"/>
        <property type="gene ID" value="Daci_2861"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_2861"/>
    <dbReference type="eggNOG" id="COG0493">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_000422_3_3_4"/>
    <dbReference type="OMA" id="QETQCEQ"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051536">
        <property type="term" value="F:iron-sulfur cluster binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016491">
        <property type="term" value="F:oxidoreductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.1060.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.50.50.60">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017896">
        <property type="entry name" value="4Fe4S_Fe-S-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR028261">
        <property type="entry name" value="DPD_II"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036188">
        <property type="entry name" value="FAD/NAD-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023753">
        <property type="entry name" value="FAD/NAD-binding_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009051">
        <property type="entry name" value="Helical_ferredxn"/>
    </dbReference>
    <dbReference type="Pfam" id="PF14691">
        <property type="entry name" value="Fer4_20"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07992">
        <property type="entry name" value="Pyr_redox_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51379">
        <property type="entry name" value="4FE4S_FER_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="4Fe-4S ferredoxin-type" evidence="1">
        <location>
            <begin position="35"/>
            <end position="65"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS51379"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX35499.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="455" mass="48086" checksum="98D57DD4111A0E3A" modified="2008-01-15" version="1">MDSPAQRACGIAAGRLNLADYAANFSDAHPALNRSQALIEAERCYYCYDAPCTTACPTSIDVPAFIARIAQDNVRGAAREILTANPLGGMCSRVCPTEQLCEQACVRNTQEDKPVEIGALQRYATDAFMASGGAPLFQRAAATGRKVAVVGAGPAGLTCAHQLALQGHEVVLFDARPKLGGLNEYGLASYKTPGDFAQKEIDWLLSVGGITPRNNQRLGRDFTLDSLLAEHDAVFLGLGLAGVNALGTAEPQAEGLRNAVDFIADIRQAADKSTVPVGRRVVVIGGGMTAVDASVQARLLGADEVTMFYRRGKDALSASWVEQEWAQTHGVNLRLWAAPQEILVQDGKVCGVRMASTRMEGDRLQVTQEVFDVPADMVLKAIGQTYVATPAGAAIALRDGRIDTDDEGRTSVPRVWAGGDCRAGGQDLTVQAVEHGKVAARAMHQALTSAVAAGV</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="49" xmlns="http://uniprot.org/uniprot">
    <accession>A9BW57</accession>
    <name>A9BW57_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Daci_3235</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="2" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX35873.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012205073.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_3235"/>
    <dbReference type="PRIDE" id="A9BW57"/>
    <dbReference type="EnsemblBacteria" id="ABX35873">
        <property type="protein sequence ID" value="ABX35873"/>
        <property type="gene ID" value="Daci_3235"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_3235"/>
    <dbReference type="eggNOG" id="COG5556">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_123849_0_1_4"/>
    <dbReference type="OMA" id="VQALACY"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018738">
        <property type="entry name" value="DUF2280"/>
    </dbReference>
    <dbReference type="Pfam" id="PF10045">
        <property type="entry name" value="DUF2280"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ABX35873.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="154" mass="17111" checksum="C093A83E73E9C83D" modified="2008-01-15" version="1">MARLDEAVKRFIVQALACYDTPSQVAEAVKEEFGLVLDRAHVAVYDPTKASGKDLSKKWRDVFFATRDAFKNEITEIPIAQRSYRLKVLQRIVSKAESMKNMPLALQVLEQAAKECGDMYVNRKPLDGDGKGGEAPQPVKVVVQVQDASADADR</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="80" xmlns="http://uniprot.org/uniprot">
    <accession>A9BWH7</accession>
    <name>A9BWH7_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="4">RNA polymerase, sigma-24 subunit, ECF subfamily</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ordered locus">Daci_3563</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="5" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the sigma-70 factor family. ECF subfamily.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX36197.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_3563"/>
    <dbReference type="PRIDE" id="A9BWH7"/>
    <dbReference type="EnsemblBacteria" id="ABX36197">
        <property type="protein sequence ID" value="ABX36197"/>
        <property type="gene ID" value="Daci_3563"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_3563"/>
    <dbReference type="eggNOG" id="COG1595">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_047691_12_1_4"/>
    <dbReference type="OMA" id="AKRVLCN"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016987">
        <property type="term" value="F:sigma factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006352">
        <property type="term" value="P:DNA-templated transcription, initiation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0050896">
        <property type="term" value="P:response to stimulus"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR039425">
        <property type="entry name" value="RNA_pol_sigma-70-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014284">
        <property type="entry name" value="RNA_pol_sigma-70_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007627">
        <property type="entry name" value="RNA_pol_sigma70_r2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013249">
        <property type="entry name" value="RNA_pol_sigma70_r4_t2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013325">
        <property type="entry name" value="RNA_pol_sigma_r2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013324">
        <property type="entry name" value="RNA_pol_sigma_r3/r4-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43133">
        <property type="entry name" value="PTHR43133"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04542">
        <property type="entry name" value="Sigma70_r2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08281">
        <property type="entry name" value="Sigma70_r4_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF88659">
        <property type="entry name" value="SSF88659"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF88946">
        <property type="entry name" value="SSF88946"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR02937">
        <property type="entry name" value="sigma70-ECF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Sigma70_r2" evidence="2">
        <location>
            <begin position="28"/>
            <end position="94"/>
        </location>
    </feature>
    <feature type="domain" description="Sigma70_r4_2" evidence="3">
        <location>
            <begin position="126"/>
            <end position="177"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00010641"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF04542"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF08281"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="ABX36197.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="182" mass="20690" checksum="B8D8DC52ABB470C6" modified="2008-01-15" version="1">MISILIIFCSSDCHCAASSAPAFSVHSLYQNHHPWLESLLRKRLGNRDDAADLAQDTFVRLLRSPLPQQDIREPRRYLATIARGLVADLFRRRTLEQSYLDYLAQLPQSLAPSPEEQAIVQQTLLDVDRMLQGLPPKVREAFVLAQFEELSYPEIAQRLGVSLRTVSNYLTRAMEHCCLVLA</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-01-19" version="37" xmlns="http://uniprot.org/uniprot">
    <accession>A9BWN7</accession>
    <name>A9BWN7_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_3933</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX36564.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="ABX36564">
        <property type="protein sequence ID" value="ABX36564"/>
        <property type="gene ID" value="Daci_3933"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_3933"/>
    <dbReference type="HOGENOM" id="CLU_184326_0_0_4"/>
    <dbReference type="OMA" id="YWIYVAL"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="22"/>
            <end position="41"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="53"/>
            <end position="71"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="77"/>
            <end position="97"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX36564.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="118" mass="13070" checksum="AC8FF97C5CD9205A" modified="2008-01-15" version="1">MTPFAKETWSCLQNCLFIQYDAVMSIDQIAFALPAVLAVWLSQSRSVALRRWACLLGLGCMPYWIYVALLAGQWGMLALAGAFALGWLKGLWVHWLAPRRREAVGSGLGTIQITPGTR</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="68" xmlns="http://uniprot.org/uniprot">
    <accession>A9BWP5</accession>
    <name>A9BWP5_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Gamma-glutamylcyclotransferase</fullName>
            <ecNumber evidence="1">4.3.2.7</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_3941</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="1">Catalyzes the cleavage of glutathione into 5-oxo-L-proline and a Cys-Gly dipeptide. Acts specifically on glutathione, but not on other gamma-glutamyl peptides.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>glutathione = 5-oxo-L-proline + L-cysteinylglycine</text>
            <dbReference type="Rhea" id="RHEA:47724"/>
            <dbReference type="ChEBI" id="CHEBI:57925"/>
            <dbReference type="ChEBI" id="CHEBI:58402"/>
            <dbReference type="ChEBI" id="CHEBI:61694"/>
            <dbReference type="EC" id="4.3.2.7"/>
        </reaction>
    </comment>
    <comment type="similarity">
        <text evidence="1">Belongs to the gamma-glutamylcyclotransferase family.</text>
    </comment>
    <dbReference type="EC" id="4.3.2.7" evidence="1"/>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX36572.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_3941"/>
    <dbReference type="PRIDE" id="A9BWP5"/>
    <dbReference type="EnsemblBacteria" id="ABX36572">
        <property type="protein sequence ID" value="ABX36572"/>
        <property type="gene ID" value="Daci_3941"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_3941"/>
    <dbReference type="eggNOG" id="COG3703">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_070703_1_2_4"/>
    <dbReference type="OMA" id="LLWYTDF"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003839">
        <property type="term" value="F:gamma-glutamylcyclotransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0061928">
        <property type="term" value="F:glutathione specific gamma-glutamylcyclotransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006751">
        <property type="term" value="P:glutathione catabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd06661">
        <property type="entry name" value="GGCT_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006840">
        <property type="entry name" value="ChaC"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013024">
        <property type="entry name" value="GGCT-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036568">
        <property type="entry name" value="GGCT-like_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR12192">
        <property type="entry name" value="PTHR12192"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04752">
        <property type="entry name" value="ChaC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF110857">
        <property type="entry name" value="SSF110857"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="1" id="KW-0456">Lyase</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="RuleBase" id="RU363081"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX36572.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="208" mass="23758" checksum="507B581BD7457600" modified="2008-01-15" version="1">MSALPEFSFARRESQPMLDEALHRWGGSDDLWIFGYGSLIWRPDFDFCERRTARVFGWHRALKMWSTINRGTPQNPGLVFGMLSGGSCQGMVFRIPRHHGHDVMKKLWQREMANAVYDPRWLPCRTGQGTVQALAFTLSRQSPNHTGELAPEDYRRIFSEAKGIYGSTHDYARATFDELKRLGIRDRALQRLLSYAGQPDAGARQGPV</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="65" xmlns="http://uniprot.org/uniprot">
    <accession>A9BWQ1</accession>
    <name>A9BWQ1_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Integrase family protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ordered locus">Daci_3947</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="5" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX36578.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012205772.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_3947"/>
    <dbReference type="PRIDE" id="A9BWQ1"/>
    <dbReference type="EnsemblBacteria" id="ABX36578">
        <property type="protein sequence ID" value="ABX36578"/>
        <property type="gene ID" value="Daci_3947"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_3947"/>
    <dbReference type="eggNOG" id="COG4974">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_782687_0_0_4"/>
    <dbReference type="OMA" id="RNTAIVQ"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015074">
        <property type="term" value="P:DNA integration"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006310">
        <property type="term" value="P:DNA recombination"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.150.130">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.443.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011010">
        <property type="entry name" value="DNA_brk_join_enz"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013762">
        <property type="entry name" value="Integrase-like_cat_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002104">
        <property type="entry name" value="Integrase_catalytic"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010998">
        <property type="entry name" value="Integrase_recombinase_N"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00589">
        <property type="entry name" value="Phage_integrase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56349">
        <property type="entry name" value="SSF56349"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51898">
        <property type="entry name" value="TYR_RECOMBINASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0233">DNA recombination</keyword>
    <keyword evidence="1" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Tyr recombinase" evidence="3">
        <location>
            <begin position="159"/>
            <end position="353"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023172"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="PROSITE" id="PS51898"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="ABX36578.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="353" mass="38797" checksum="D442113DD193A2D8" modified="2008-01-15" version="1">MTSSPSQAPAAGKSPSTVPDGLALFRHWLETEGAKGWDALDTAPDSGYEKVWRAWLRSLGDVGMSAKEDPPSPAPPKGKVKAKARAWQQATAVDVQNFLRPREGQLSGHQPGRRISEVTRRRYWRLLERIYDHALDHGWVSANPAAGLAPQERPPAEDGQGHCLPAPLWNALPRHIPMADGFQSARDRAILLLLYELALAPEEVRGLCWRDVQCAGPGDGLPCQLHIDGARAAQQRTLDLSETVVKALQDWKGFSAGQRGPQAVQPDATVFYSREGQPLSVRVLFHVASQLIQRAHAAQPASAQQAPLHRVGPQVLRNTAIVQWLRAGRAETEVVQWIGVDSARALRHLQHYL</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="94" xmlns="http://uniprot.org/uniprot">
    <accession>A9BWY8</accession>
    <name>A9BWY8_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="3 10 14">Catalase</fullName>
            <ecNumber evidence="3 10 14">1.11.1.6</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="17" type="ordered locus">Daci_4342</name>
    </gene>
    <organism evidence="17 18">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="17 18" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="18">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="18" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="18">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="10">Serves to protect cells from the toxic effects of hydrogen peroxide.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="10 14">
            <text>2 H2O2 = 2 H2O + O2</text>
            <dbReference type="Rhea" id="RHEA:20309"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:15379"/>
            <dbReference type="ChEBI" id="CHEBI:16240"/>
            <dbReference type="EC" id="1.11.1.6"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="1 10 12">
            <name>heme</name>
            <dbReference type="ChEBI" id="CHEBI:30413"/>
        </cofactor>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the catalase family. HPII subfamily.</text>
    </comment>
    <dbReference type="EC" id="1.11.1.6" evidence="3 10 14"/>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX36973.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012206145.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_4342"/>
    <dbReference type="PRIDE" id="A9BWY8"/>
    <dbReference type="EnsemblBacteria" id="ABX36973">
        <property type="protein sequence ID" value="ABX36973"/>
        <property type="gene ID" value="Daci_4342"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_4342"/>
    <dbReference type="eggNOG" id="COG0693">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="eggNOG" id="COG0753">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_010645_3_0_4"/>
    <dbReference type="OMA" id="VMWQMSD"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004096">
        <property type="term" value="F:catalase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0020037">
        <property type="term" value="F:heme binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0042744">
        <property type="term" value="P:hydrogen peroxide catabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006979">
        <property type="term" value="P:response to oxidative stress"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd03132">
        <property type="entry name" value="GATase1_catalase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.1370.20">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.880">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018028">
        <property type="entry name" value="Catalase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR024708">
        <property type="entry name" value="Catalase_AS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR024712">
        <property type="entry name" value="Catalase_clade2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043156">
        <property type="entry name" value="Catalase_clade2_helical"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011614">
        <property type="entry name" value="Catalase_core"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002226">
        <property type="entry name" value="Catalase_haem_BS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010582">
        <property type="entry name" value="Catalase_immune_responsive"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041399">
        <property type="entry name" value="Catalase_large_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020835">
        <property type="entry name" value="Catalase_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029062">
        <property type="entry name" value="Class_I_gatase-like"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR42821">
        <property type="entry name" value="PTHR42821"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00199">
        <property type="entry name" value="Catalase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF06628">
        <property type="entry name" value="Catalase-rel"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF18011">
        <property type="entry name" value="Catalase_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF038927">
        <property type="entry name" value="Catalase_clade2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00067">
        <property type="entry name" value="CATALASE"/>
    </dbReference>
    <dbReference type="SMART" id="SM01060">
        <property type="entry name" value="Catalase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52317">
        <property type="entry name" value="SSF52317"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56634">
        <property type="entry name" value="SSF56634"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00437">
        <property type="entry name" value="CATALASE_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00438">
        <property type="entry name" value="CATALASE_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51402">
        <property type="entry name" value="CATALASE_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5 10 13" id="KW-0349">Heme</keyword>
    <keyword evidence="9 10 14" id="KW-0376">Hydrogen peroxide</keyword>
    <keyword evidence="8 10 12" id="KW-0408">Iron</keyword>
    <keyword evidence="6 10 12" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="7 10 14" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="4 10 14" id="KW-0575">Peroxidase</keyword>
    <keyword evidence="18" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Catalase" evidence="16">
        <location>
            <begin position="35"/>
            <end position="423"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="15">
        <location>
            <begin position="1"/>
            <end position="49"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="15">
        <location>
            <begin position="11"/>
            <end position="49"/>
        </location>
    </feature>
    <feature type="active site" evidence="11">
        <location>
            <position position="82"/>
        </location>
    </feature>
    <feature type="active site" evidence="11">
        <location>
            <position position="155"/>
        </location>
    </feature>
    <feature type="binding site" evidence="13">
        <location>
            <position position="79"/>
        </location>
        <ligand>
            <name>heme</name>
            <dbReference type="ChEBI" id="CHEBI:30413"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="13">
        <location>
            <position position="119"/>
        </location>
        <ligand>
            <name>heme</name>
            <dbReference type="ChEBI" id="CHEBI:30413"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="13">
        <location>
            <position position="168"/>
        </location>
        <ligand>
            <name>heme</name>
            <dbReference type="ChEBI" id="CHEBI:30413"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="13">
        <location>
            <position position="365"/>
        </location>
        <ligand>
            <name>heme</name>
            <dbReference type="ChEBI" id="CHEBI:30413"/>
        </ligand>
    </feature>
    <feature type="binding site" description="axial binding residue" evidence="12">
        <location>
            <position position="369"/>
        </location>
        <ligand>
            <name>heme</name>
            <dbReference type="ChEBI" id="CHEBI:30413"/>
        </ligand>
        <ligandPart>
            <name>Fe</name>
            <dbReference type="ChEBI" id="CHEBI:18248"/>
        </ligandPart>
    </feature>
    <feature type="binding site" evidence="13">
        <location>
            <position position="376"/>
        </location>
        <ligand>
            <name>heme</name>
            <dbReference type="ChEBI" id="CHEBI:30413"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001971"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00010660"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00012314"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022559"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022617"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023002"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00023004"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00023324"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="PIRNR" id="PIRNR038927"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="PIRSR" id="PIRSR038927-1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="12">
        <source>
            <dbReference type="PIRSR" id="PIRSR038927-2"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="13">
        <source>
            <dbReference type="PIRSR" id="PIRSR038927-3"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="14">
        <source>
            <dbReference type="RuleBase" id="RU000498"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="15">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="16">
        <source>
            <dbReference type="SMART" id="SM01060"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="17">
        <source>
            <dbReference type="EMBL" id="ABX36973.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="18">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="695" mass="76783" checksum="DBEEBB7F61E66D24" modified="2008-01-15" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="70" xmlns="http://uniprot.org/uniprot">
    <accession>A9BXC1</accession>
    <name>A9BXC1_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Alkaline phosphatase</fullName>
            <ecNumber evidence="3">3.1.3.1</ecNumber>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Daci_5568</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="4" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the alkaline phosphatase family.</text>
    </comment>
    <dbReference type="EC" id="3.1.3.1" evidence="3"/>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX38197.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012207366.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_5568"/>
    <dbReference type="PRIDE" id="A9BXC1"/>
    <dbReference type="EnsemblBacteria" id="ABX38197">
        <property type="protein sequence ID" value="ABX38197"/>
        <property type="gene ID" value="Daci_5568"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_5568"/>
    <dbReference type="eggNOG" id="COG1785">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_008539_4_1_4"/>
    <dbReference type="OMA" id="CANMQVA"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004035">
        <property type="term" value="F:alkaline phosphatase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="CDD" id="cd16012">
        <property type="entry name" value="ALP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.720.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001952">
        <property type="entry name" value="Alkaline_phosphatase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017850">
        <property type="entry name" value="Alkaline_phosphatase_core_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11596">
        <property type="entry name" value="PTHR11596"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00245">
        <property type="entry name" value="Alk_phosphatase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00113">
        <property type="entry name" value="ALKPHPHTASE"/>
    </dbReference>
    <dbReference type="SMART" id="SM00098">
        <property type="entry name" value="alkPPc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53649">
        <property type="entry name" value="SSF53649"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="2">
        <location>
            <begin position="1"/>
            <end position="19"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5002733142" evidence="2">
        <location>
            <begin position="20"/>
            <end position="470"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="RuleBase" id="RU003946"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ABX38197.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="470" mass="49150" checksum="A6EE042E636E88D4" modified="2008-01-15" version="1">MKLKMLCSALAGASLLLSACGGSDGSSAAAPTKNVLFFLGDGMGITTMTAARIYSVGEDGELTMDKLPETAFVHTFSNDAQVTDSAPSMAAYMTGVKMNNEVISMTPDTKATDAAGKAYHTNYDSTCPSGNGQAVPTLLEQMKSAGYGTGVVSTARITHATPATTYSHVCHRDAENTIAAALVPGGSGYNSKLGDGVDVILGGGSYYFTPKADGGRRNDSRNLIAEFKTQKYSYAANKSEFDKLPVDGSKIAGLFTKDHMAYDLDRDATKEPSLAEMTGKAIDALSAKKKGFFLMVEGGRIDHALHATNARRALQDTVAFDNAIQTALDKMAKLDPGLKNTLIVVTADHDHTLHLNGYAARTGKTEAGKPGVLGLVKNYVDGKASTDVDGNPYTILGFGNGPKRLATRGPIDAASLESPDYLQEAVVPLASETHGGGDVFLGAQGMGADTFSGVIDNTTVFTLIKKSIGL</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="95" xmlns="http://uniprot.org/uniprot">
    <accession>A9BXC7</accession>
    <name>A9BXC7_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="10">3-dehydroquinate synthase</fullName>
            <shortName evidence="10">DHQS</shortName>
            <ecNumber evidence="10">4.2.3.4</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="10" type="primary">aroB</name>
        <name evidence="12" type="ordered locus">Daci_5574</name>
    </gene>
    <organism evidence="12 13">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="12 13" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="13">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="13" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="13">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="10">Catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) to dehydroquinate (DHQ).</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="10">
            <text>7-phospho-2-dehydro-3-deoxy-D-arabino-heptonate = 3-dehydroquinate + phosphate</text>
            <dbReference type="Rhea" id="RHEA:21968"/>
            <dbReference type="ChEBI" id="CHEBI:32364"/>
            <dbReference type="ChEBI" id="CHEBI:43474"/>
            <dbReference type="ChEBI" id="CHEBI:58394"/>
            <dbReference type="EC" id="4.2.3.4"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="10">
            <name>Co(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:48828"/>
        </cofactor>
        <cofactor evidence="10">
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </cofactor>
        <text evidence="10">Binds 1 divalent metal cation per subunit. Can use either Co(2+) or Zn(2+).</text>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="1 10">
            <name>NAD(+)</name>
            <dbReference type="ChEBI" id="CHEBI:57540"/>
        </cofactor>
    </comment>
    <comment type="pathway">
        <text evidence="10">Metabolic intermediate biosynthesis; chorismate biosynthesis; chorismate from D-erythrose 4-phosphate and phosphoenolpyruvate: step 2/7.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="10">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2 10">Belongs to the sugar phosphate cyclases superfamily. Dehydroquinate synthase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="10">Lacks conserved residue(s) required for the propagation of feature annotation.</text>
    </comment>
    <dbReference type="EC" id="4.2.3.4" evidence="10"/>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX38203.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012207372.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_5574"/>
    <dbReference type="PRIDE" id="A9BXC7"/>
    <dbReference type="EnsemblBacteria" id="ABX38203">
        <property type="protein sequence ID" value="ABX38203"/>
        <property type="gene ID" value="Daci_5574"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_5574"/>
    <dbReference type="eggNOG" id="COG0337">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_001201_0_2_4"/>
    <dbReference type="OMA" id="YGVIWDA"/>
    <dbReference type="UniPathway" id="UPA00053">
        <property type="reaction ID" value="UER00085"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003856">
        <property type="term" value="F:3-dehydroquinate synthase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000166">
        <property type="term" value="F:nucleotide binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009073">
        <property type="term" value="P:aromatic amino acid family biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008652">
        <property type="term" value="P:cellular amino acid biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009423">
        <property type="term" value="P:chorismate biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniPathway"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00110">
        <property type="entry name" value="DHQ_synthase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016037">
        <property type="entry name" value="DHQ_synth_AroB"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR030963">
        <property type="entry name" value="DHQ_synth_fam"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR030960">
        <property type="entry name" value="DHQS/DOIS"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01761">
        <property type="entry name" value="DHQ_synthase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF001455">
        <property type="entry name" value="DHQ_synth"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01357">
        <property type="entry name" value="aroB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="10" id="KW-0028">Amino-acid biosynthesis</keyword>
    <keyword evidence="7 10" id="KW-0057">Aromatic amino acid biosynthesis</keyword>
    <keyword evidence="9 10" id="KW-0170">Cobalt</keyword>
    <keyword evidence="10" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="8 10 12" id="KW-0456">Lyase</keyword>
    <keyword evidence="3 10" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="6 10" id="KW-0520">NAD</keyword>
    <keyword evidence="4 10" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="13" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="5 10" id="KW-0862">Zinc</keyword>
    <feature type="domain" description="DHQ_synthase" evidence="11">
        <location>
            <begin position="76"/>
            <end position="337"/>
        </location>
    </feature>
    <feature type="binding site" evidence="10">
        <location>
            <begin position="80"/>
            <end position="85"/>
        </location>
        <ligand>
            <name>NAD(+)</name>
            <dbReference type="ChEBI" id="CHEBI:57540"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="10">
        <location>
            <begin position="114"/>
            <end position="118"/>
        </location>
        <ligand>
            <name>NAD(+)</name>
            <dbReference type="ChEBI" id="CHEBI:57540"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="10">
        <location>
            <begin position="138"/>
            <end position="139"/>
        </location>
        <ligand>
            <name>NAD(+)</name>
            <dbReference type="ChEBI" id="CHEBI:57540"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="10">
        <location>
            <position position="151"/>
        </location>
        <ligand>
            <name>NAD(+)</name>
            <dbReference type="ChEBI" id="CHEBI:57540"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="10">
        <location>
            <position position="160"/>
        </location>
        <ligand>
            <name>NAD(+)</name>
            <dbReference type="ChEBI" id="CHEBI:57540"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="10">
        <location>
            <position position="193"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="10">
        <location>
            <position position="256"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="10">
        <location>
            <position position="273"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001911"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00005412"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022833"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023027"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00023239"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00023285"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00110"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="11">
        <source>
            <dbReference type="Pfam" id="PF01761"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="EMBL" id="ABX38203.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="13">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="372" mass="39665" checksum="091F9E0CC643F253" modified="2008-01-15" version="1">MPTASSLPAAQVVTIDLGDRSYPITIGTGLLDQAATYAALPSAAQAVIVSNDVVAPLYEPALRRVLEQRYRSVRTVVLPDGEAHKDWQTLNLIFDDLLSGGCDRKTVLFALGGGVIGDMTGFAAASYMRGVPFVQVPTTLLSQVDSSVGGKTAINHPLGKNMIGAFYQPQLVVCDLASLDTLPVRELSAGLAEVIKYGPIADMDFLAWLEENMDALLARDRTALAHAIKRSVEIKAWVVGQDEKEAGLRAILNFGHTFGHAIEAGMGYGNWLHGEGVGAGMVMAAELSQRLGLVDAAFVQRLRVLIARAGLPVRGAVLDEADNAGRYLELMRVDKKSEAGEIRFVLIDGPGKAVMRSAPDALVREVINACCA</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="83" xmlns="http://uniprot.org/uniprot">
    <accession>A9BXL6</accession>
    <name>A9BXL6_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Transcriptional regulator, LysR family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Daci_5664</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="4" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the LysR transcriptional regulatory family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX38292.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012207461.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_5664"/>
    <dbReference type="PRIDE" id="A9BXL6"/>
    <dbReference type="EnsemblBacteria" id="ABX38292">
        <property type="protein sequence ID" value="ABX38292"/>
        <property type="gene ID" value="Daci_5664"/>
    </dbReference>
    <dbReference type="GeneID" id="60690027"/>
    <dbReference type="KEGG" id="dac:Daci_5664"/>
    <dbReference type="eggNOG" id="COG0583">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_039613_37_1_4"/>
    <dbReference type="OMA" id="ETFYMCI"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003700">
        <property type="term" value="F:DNA-binding transcription factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005119">
        <property type="entry name" value="LysR_subst-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000847">
        <property type="entry name" value="Tscrpt_reg_HTH_LysR"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036390">
        <property type="entry name" value="WH_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00126">
        <property type="entry name" value="HTH_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03466">
        <property type="entry name" value="LysR_substrate"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00039">
        <property type="entry name" value="HTHLYSR"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46785">
        <property type="entry name" value="SSF46785"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50931">
        <property type="entry name" value="HTH_LYSR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HTH lysR-type" evidence="2">
        <location>
            <begin position="9"/>
            <end position="66"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00009437"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS50931"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ABX38292.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="306" mass="33895" checksum="F4D1AC6257190187" modified="2008-01-15" version="1">MLLSRRFLPPMSLLCAFEAAARHQSFTAAAAELHLTQSAVSRQIRALEERLEAELFVRERQTVRLSPAGQAYAQEIRGALMRISTATLGFRANPRGGSLNLAILPTFGTRWLAPRLPQFFSAHPGITINLTTRLSQFDFQLEAVDAAIHFGLPHWPGAELAFLMSETVVPACSPALLAQHGFAQPQDLLQAPLLHLASRPDAWQRWLSVHHAPMAEGQGMLFDQFATAAQAAIAGVGVALLPRFLIERELAQGDLVRALPHLPEMESAERYYLAWPTSRGNYPPLQSLREWLQQAAQDFMRDGPQP</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="70" xmlns="http://uniprot.org/uniprot">
    <accession>A9BXV9</accession>
    <name>A9BXV9_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Short-chain dehydrogenase/reductase SDR</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Daci_1250</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="2" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX33894.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012203180.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_1250"/>
    <dbReference type="PRIDE" id="A9BXV9"/>
    <dbReference type="EnsemblBacteria" id="ABX33894">
        <property type="protein sequence ID" value="ABX33894"/>
        <property type="gene ID" value="Daci_1250"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_1250"/>
    <dbReference type="eggNOG" id="COG1028">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_010194_1_3_4"/>
    <dbReference type="OMA" id="DGGQHLM"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036291">
        <property type="entry name" value="NAD(P)-bd_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002347">
        <property type="entry name" value="SDR_fam"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00081">
        <property type="entry name" value="GDHRDH"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51735">
        <property type="entry name" value="SSF51735"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ABX33894.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="261" mass="27781" checksum="E165D1BE916A5F0D" modified="2008-01-15" version="1">MSTPARTRTVLVTGAARRLGRDIALALASAGWQVAVHYRDSHDEALETAAACAELAGDSAALDADFFNEDSVRSLVPRAVAHFGHLDAVVNNASLFEHDDAGSFSYVALEAHLRSNTGAPILLAQALHAHIEDRVAAGEEHASGAVINMLDQKLWNQNPDFLSYTLSKAALEAAGTMLALALAPRVRVVGVAPGLTLTSHMLSQERFESLHRLSPLGRSSSAADVAATVCFALDNQSITGTTLLVDGGQHLQRFERDFSMM</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="79" xmlns="http://uniprot.org/uniprot">
    <accession>A9BY84</accession>
    <name>A9BY84_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">Putative pre-16S rRNA nuclease</fullName>
            <ecNumber evidence="2">3.1.-.-</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="4" type="ordered locus">Daci_1579</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="5" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="2">Could be a nuclease involved in processing of the 5'-end of pre-16S rRNA.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="2">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the YqgF HJR family.</text>
    </comment>
    <dbReference type="EC" id="3.1.-.-" evidence="2"/>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX34223.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012203508.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_1579"/>
    <dbReference type="PRIDE" id="A9BY84"/>
    <dbReference type="EnsemblBacteria" id="ABX34223">
        <property type="protein sequence ID" value="ABX34223"/>
        <property type="gene ID" value="Daci_1579"/>
    </dbReference>
    <dbReference type="GeneID" id="60686116"/>
    <dbReference type="KEGG" id="dac:Daci_1579"/>
    <dbReference type="eggNOG" id="COG0816">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_098240_3_2_4"/>
    <dbReference type="OMA" id="PNWDDIE"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004518">
        <property type="term" value="F:nuclease activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000967">
        <property type="term" value="P:rRNA 5'-end processing"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd16964">
        <property type="entry name" value="YqgF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.420.140">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00651">
        <property type="entry name" value="Nuclease_YqgF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012337">
        <property type="entry name" value="RNaseH-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005227">
        <property type="entry name" value="YqgF"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006641">
        <property type="entry name" value="YqgF/RNaseH-like_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037027">
        <property type="entry name" value="YqgF/RNaseH-like_dom_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33317">
        <property type="entry name" value="PTHR33317"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03652">
        <property type="entry name" value="RuvX"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00732">
        <property type="entry name" value="YqgFc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53098">
        <property type="entry name" value="SSF53098"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00250">
        <property type="entry name" value="RNAse_H_YqgF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="2" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="2" id="KW-0540">Nuclease</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1 2" id="KW-0690">Ribosome biogenesis</keyword>
    <feature type="domain" description="YqgFc" evidence="3">
        <location>
            <begin position="27"/>
            <end position="127"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022517"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00651"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="SMART" id="SM00732"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="ABX34223.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="152" mass="16177" checksum="D22605601D6206C3" modified="2008-01-15" version="1">MSLPAPESQAAAAAGTAVPPTVPSHFQSFVAFDFGAKRTGCAVGTRMLRSANPLPTIRAEAGEARLAQAGERIKEWQPDALVIGVPYHPDGNAHENTARAKKFGRQLKSRFGLPVYEVDERYSTTEALAGGARDADAASACIILEQFLRSLP</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="54" xmlns="http://uniprot.org/uniprot">
    <accession>A9BYD3</accession>
    <name>A9BYD3_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Transcriptional activator Ogr/delta</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Daci_1628</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="4" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX34272.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012203557.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_1628"/>
    <dbReference type="PRIDE" id="A9BYD3"/>
    <dbReference type="EnsemblBacteria" id="ABX34272">
        <property type="protein sequence ID" value="ABX34272"/>
        <property type="gene ID" value="Daci_1628"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_1628"/>
    <dbReference type="eggNOG" id="ENOG5033AEK">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_170894_1_1_4"/>
    <dbReference type="OMA" id="NMEFART"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007684">
        <property type="entry name" value="Znf_Ogr/Delta"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04606">
        <property type="entry name" value="Ogr_Delta"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Ogr_Delta" evidence="2">
        <location>
            <begin position="4"/>
            <end position="50"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="73"/>
            <end position="106"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF04606"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ABX34272.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="106" mass="11764" checksum="EA1B257329CF7EEC" modified="2008-01-15" version="1">MRMMCPHCQEHAYTRTSLQLTSTSRETIFQCRNYECGHVFSAVTEINRTISPSAIPNPAVVLPMSTHIKRKLLQSQLDAMPSSPYQPGSHAAPTATTSHQGTEARH</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="75" xmlns="http://uniprot.org/uniprot">
    <accession>A9BYL0</accession>
    <name>A9BYL0_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="6">Histone family protein nucleoid-structuring protein H-NS</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ordered locus">Daci_1913</name>
        <name evidence="7" type="ordered locus">Daci_4128</name>
    </gene>
    <organism evidence="6 8">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="6 8" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">DSM 14801 / SPH-1</strain>
            <strain evidence="6">SPH-1</strain>
        </source>
    </reference>
    <reference evidence="8" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="6" key="3">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="6">SPH-1</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Cytoplasm</location>
            <location evidence="1">Nucleoid</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the histone-like protein H-NS family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX34553.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX36759.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012203838.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_1913"/>
    <dbReference type="PRIDE" id="A9BYL0"/>
    <dbReference type="EnsemblBacteria" id="ABX34553">
        <property type="protein sequence ID" value="ABX34553"/>
        <property type="gene ID" value="Daci_1913"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="ABX36759">
        <property type="protein sequence ID" value="ABX36759"/>
        <property type="gene ID" value="Daci_4128"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_1913"/>
    <dbReference type="KEGG" id="dac:Daci_4128"/>
    <dbReference type="eggNOG" id="COG2916">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_117503_5_1_4"/>
    <dbReference type="OMA" id="WIKGGRR"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009295">
        <property type="term" value="C:nucleoid"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030527">
        <property type="term" value="F:structural constituent of chromatin"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006355">
        <property type="term" value="P:regulation of transcription, DNA-templated"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027444">
        <property type="entry name" value="H-NS_C_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001801">
        <property type="entry name" value="Histone_HNS"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00816">
        <property type="entry name" value="Histone_HNS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00528">
        <property type="entry name" value="HNS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="4" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HNS" evidence="5">
        <location>
            <begin position="53"/>
            <end position="92"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004453"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00010610"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022490"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="SMART" id="SM00528"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="ABX34553.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="ABX36759.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="95" mass="9953" checksum="16AC8416AB2A7C11" modified="2008-01-15" version="1">MTDYKTLLARKAELDAQIAQAQAEHKAEGIAAARALIAEHGLTAADVFPTAKAKAGSVGVPKYRNPATGATWTGRGKPPNWINGKDRAPFLISAA</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="52" xmlns="http://uniprot.org/uniprot">
    <accession>A9BYN9</accession>
    <name>A9BYN9_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Phage terminase, large subunit, PBSX family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_1942</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX34582.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012203867.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_1942"/>
    <dbReference type="PRIDE" id="A9BYN9"/>
    <dbReference type="EnsemblBacteria" id="ABX34582">
        <property type="protein sequence ID" value="ABX34582"/>
        <property type="gene ID" value="Daci_1942"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_1942"/>
    <dbReference type="eggNOG" id="COG1783">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_054545_0_0_4"/>
    <dbReference type="OMA" id="WYHEKRD"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035412">
        <property type="entry name" value="Terminase_L_N"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04466">
        <property type="entry name" value="Terminase_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Terminase_3" evidence="1">
        <location>
            <begin position="24"/>
            <end position="193"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF04466"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX34582.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="433" mass="48792" checksum="5FA026E65363792B" modified="2008-01-15" version="1">MTTAQIAIPEKLIELFSGEADVRACDGGRGSGKTRSFAKMAAVKGYQYGKAGVTGILLCARQFMNSLEDSSLEECKRAIEDEPWLAAYYDVGDKYIKSRDGRITFAFAGLDRNIASIKSKGRLLLCWVDEAEPVTDEAWTTLIPTLREEGTDWNAELWVTWNPKRKSAPVEKRFKGSSDPRMKYVRCNWKDNPKFPALLERVRLRDLAERPEQYAHIWEGDYATVIEGAYFASHIVKARQDNRIGRVPADPLMTLRAFVDIGGTGARADAFAMWIAQFVGKEIRVLDYYEQVGQPLSSHLNWMREKGYDKAQIWLPHDGATQDKVHDVSYESALRQAGYTVTVVPNQGKGAAKARIEAGRRLFGSMWFNEATTQPGLEALGWYHEKRDEQRGIGLGPEHDWSSHGADAFGLMCVAYEEPRESKPLNYPRLSHA</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="89" xmlns="http://uniprot.org/uniprot">
    <accession>A9BYS4</accession>
    <name>A9BYS4_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">Acetylornithine aminotransferase</fullName>
            <shortName evidence="2">ACOAT</shortName>
            <ecNumber evidence="2">2.6.1.11</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="primary">argD</name>
        <name evidence="4" type="ordered locus">Daci_2179</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="5" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="2">
            <text>2-oxoglutarate + N(2)-acetyl-L-ornithine = L-glutamate + N-acetyl-L-glutamate 5-semialdehyde</text>
            <dbReference type="Rhea" id="RHEA:18049"/>
            <dbReference type="ChEBI" id="CHEBI:16810"/>
            <dbReference type="ChEBI" id="CHEBI:29123"/>
            <dbReference type="ChEBI" id="CHEBI:29985"/>
            <dbReference type="ChEBI" id="CHEBI:57805"/>
            <dbReference type="EC" id="2.6.1.11"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="2">
            <name>pyridoxal 5'-phosphate</name>
            <dbReference type="ChEBI" id="CHEBI:597326"/>
        </cofactor>
        <text evidence="2">Binds 1 pyridoxal phosphate per subunit.</text>
    </comment>
    <comment type="pathway">
        <text evidence="2">Amino-acid biosynthesis; L-arginine biosynthesis; N(2)-acetyl-L-ornithine from L-glutamate: step 4/4.</text>
    </comment>
    <comment type="subunit">
        <text evidence="2">Homodimer.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="2">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="miscellaneous">
        <text evidence="2">May also have succinyldiaminopimelate aminotransferase activity, thus carrying out the corresponding step in lysine biosynthesis.</text>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. ArgD subfamily.</text>
    </comment>
    <comment type="caution">
        <text evidence="2">Lacks conserved residue(s) required for the propagation of feature annotation.</text>
    </comment>
    <dbReference type="EC" id="2.6.1.11" evidence="2"/>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX34819.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012204102.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_2179"/>
    <dbReference type="PRIDE" id="A9BYS4"/>
    <dbReference type="EnsemblBacteria" id="ABX34819">
        <property type="protein sequence ID" value="ABX34819"/>
        <property type="gene ID" value="Daci_2179"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_2179"/>
    <dbReference type="eggNOG" id="COG4992">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_016922_10_1_4"/>
    <dbReference type="OMA" id="KYSSDYA"/>
    <dbReference type="UniPathway" id="UPA00068">
        <property type="reaction ID" value="UER00109"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003992">
        <property type="term" value="F:N2-acetyl-L-ornithine:2-oxoglutarate 5-aminotransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030170">
        <property type="term" value="F:pyridoxal phosphate binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006526">
        <property type="term" value="P:arginine biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd00610">
        <property type="entry name" value="OAT_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.640.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.1150.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01107">
        <property type="entry name" value="ArgD_aminotrans_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004636">
        <property type="entry name" value="AcOrn/SuccOrn_fam"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005814">
        <property type="entry name" value="Aminotrans_3"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015424">
        <property type="entry name" value="PyrdxlP-dep_Trfase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015421">
        <property type="entry name" value="PyrdxlP-dep_Trfase_major"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015422">
        <property type="entry name" value="PyrdxlP-dep_Trfase_small"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00202">
        <property type="entry name" value="Aminotran_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF000521">
        <property type="entry name" value="Transaminase_4ab_Lys_Orn"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53383">
        <property type="entry name" value="SSF53383"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00707">
        <property type="entry name" value="argD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00600">
        <property type="entry name" value="AA_TRANSFER_CLASS_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2" id="KW-0028">Amino-acid biosynthesis</keyword>
    <keyword evidence="2 4" id="KW-0032">Aminotransferase</keyword>
    <keyword evidence="2" id="KW-0055">Arginine biosynthesis</keyword>
    <keyword evidence="2" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="1 2 3" id="KW-0663">Pyridoxal phosphate</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 4" id="KW-0808">Transferase</keyword>
    <feature type="region of interest" description="Pyridoxal phosphate binding" evidence="2">
        <location>
            <begin position="222"/>
            <end position="225"/>
        </location>
    </feature>
    <feature type="binding site" evidence="2">
        <location>
            <position position="135"/>
        </location>
        <ligand>
            <name>pyridoxal 5'-phosphate</name>
            <dbReference type="ChEBI" id="CHEBI:597326"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="2">
        <location>
            <position position="138"/>
        </location>
        <ligand>
            <name>N(2)-acetyl-L-ornithine</name>
            <dbReference type="ChEBI" id="CHEBI:57805"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="2">
        <location>
            <position position="279"/>
        </location>
        <ligand>
            <name>N(2)-acetyl-L-ornithine</name>
            <dbReference type="ChEBI" id="CHEBI:57805"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="2">
        <location>
            <position position="280"/>
        </location>
        <ligand>
            <name>pyridoxal 5'-phosphate</name>
            <dbReference type="ChEBI" id="CHEBI:597326"/>
        </ligand>
    </feature>
    <feature type="modified residue" description="N6-(pyridoxal phosphate)lysine" evidence="2">
        <location>
            <position position="251"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022898"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01107"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="RuleBase" id="RU003560"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="ABX34819.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="398" mass="42557" checksum="5EB9C9911A18A60E" modified="2008-01-15" version="1">MTAFIEAASPHVMNTYGRVPIALERGQGCRVWDVNGKQYLDALGGIAVNTLGHNHPKLVPALQDQVAKLIHTSNYYHVPGQETLAKLLTERAKMTNVFFCSTGLEANEAAIKIARKYGVDKGIAKPVIVVYEHAFHGRSIATMTATGNPKVRDGFGPLLDGFLRVPVNDFEALQQATAGNPDVVAVMMEPIQGEGGLHPMRIEYMQQVRALCDANGWLMMFDEVQAGMGRTGKWFAHQWAGIIPDVMTLAKGLGSGVPIGAVVAHGKAATVLQPGNHGSTFGGNPLAMRAGIETIRIMEEDGLLAHTTKVGDHLKATLQKELADVKGVVDVRGQGLIIGIELNKPCGALLGRGAEAGLLFSVTADTVVRLVPPLIMTEAEADEVVAKLKPLIVQFLSE</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="101" xmlns="http://uniprot.org/uniprot">
    <accession>A9BYT0</accession>
    <name>A9BYT0_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="4 12">Phosphoribosylformylglycinamidine cyclo-ligase</fullName>
            <ecNumber evidence="3 12">6.3.3.1</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="10 12">AIR synthase</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="11 12">AIRS</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="9 12">Phosphoribosyl-aminoimidazole synthetase</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="12" type="primary">purM</name>
        <name evidence="15" type="ordered locus">Daci_2185</name>
    </gene>
    <organism evidence="15 16">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="15 16" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="16">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="16" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="16">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="8 12">
            <text>2-formamido-N(1)-(5-O-phospho-beta-D-ribosyl)acetamidine + ATP = 5-amino-1-(5-phospho-beta-D-ribosyl)imidazole + ADP + H(+) + phosphate</text>
            <dbReference type="Rhea" id="RHEA:23032"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:43474"/>
            <dbReference type="ChEBI" id="CHEBI:137981"/>
            <dbReference type="ChEBI" id="CHEBI:147287"/>
            <dbReference type="ChEBI" id="CHEBI:456216"/>
            <dbReference type="EC" id="6.3.3.1"/>
        </reaction>
    </comment>
    <comment type="pathway">
        <text evidence="1 12">Purine metabolism; IMP biosynthesis via de novo pathway; 5-amino-1-(5-phospho-D-ribosyl)imidazole from N(2)-formyl-N(1)-(5-phospho-D-ribosyl)glycinamide: step 2/2.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="12">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2 12">Belongs to the AIR synthase family.</text>
    </comment>
    <dbReference type="EC" id="6.3.3.1" evidence="3 12"/>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX34825.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012204108.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_2185"/>
    <dbReference type="PRIDE" id="A9BYT0"/>
    <dbReference type="EnsemblBacteria" id="ABX34825">
        <property type="protein sequence ID" value="ABX34825"/>
        <property type="gene ID" value="Daci_2185"/>
    </dbReference>
    <dbReference type="GeneID" id="60686580"/>
    <dbReference type="KEGG" id="dac:Daci_2185"/>
    <dbReference type="eggNOG" id="COG0150">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_047116_0_0_4"/>
    <dbReference type="OMA" id="EPLFMTD"/>
    <dbReference type="UniPathway" id="UPA00074">
        <property type="reaction ID" value="UER00129"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004641">
        <property type="term" value="F:phosphoribosylformylglycinamidine cyclo-ligase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006189">
        <property type="term" value="P:'de novo' IMP biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd02196">
        <property type="entry name" value="PurM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.1330.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.650.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00741">
        <property type="entry name" value="AIRS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010918">
        <property type="entry name" value="PurM-like_C_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036676">
        <property type="entry name" value="PurM-like_C_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016188">
        <property type="entry name" value="PurM-like_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036921">
        <property type="entry name" value="PurM-like_N_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004733">
        <property type="entry name" value="PurM_cligase"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10520">
        <property type="entry name" value="PTHR10520"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00586">
        <property type="entry name" value="AIRS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02769">
        <property type="entry name" value="AIRS_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55326">
        <property type="entry name" value="SSF55326"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56042">
        <property type="entry name" value="SSF56042"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00878">
        <property type="entry name" value="purM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="7 12" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="12" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="5 12 15" id="KW-0436">Ligase</keyword>
    <keyword evidence="6 12" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="12" id="KW-0658">Purine biosynthesis</keyword>
    <keyword evidence="16" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="AIRS" evidence="13">
        <location>
            <begin position="65"/>
            <end position="168"/>
        </location>
    </feature>
    <feature type="domain" description="AIRS_C" evidence="14">
        <location>
            <begin position="181"/>
            <end position="345"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004686"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00010280"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00013047"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00020367"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022598"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00023392"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00031908"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00032931"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="ARBA" id="ARBA00033093"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="12">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="13">
        <source>
            <dbReference type="Pfam" id="PF00586"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="14">
        <source>
            <dbReference type="Pfam" id="PF02769"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="15">
        <source>
            <dbReference type="EMBL" id="ABX34825.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="16">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="350" mass="36495" checksum="175D66090FD86344" modified="2008-01-15" version="1">MSSSAPSSTPISYKDAGVDIVAGDALVERIKPLAKKTMREGVMAGIGGFGALFEVPKRYKEPVLVSGTDGVGTKLKLAFEWNMHDTVGIDLVAMSVNDVLVQGAEPLFFLDYFACGKLDVDTAAAVVGGIARGCELSGCALIGGETAEMPGMYPAGEYDLAGFAVGAVEKSKILTGQSVAAGDVVLGLASAGVHSNGFSLVRKCIERAEAQGSLPESLDGKPFKQAIMEPTRLYVKNVLAALEQHPIKALAHITGGGLLENIPRVLPEGLAAHLDAGSWPQTELFAWLQKTAGIDAVEMNRTFNNGIGMVVVVPAEAAEATAATLKQLGETVYTIGRIAARGEGEPVEVR</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="52" xmlns="http://uniprot.org/uniprot">
    <accession>A9BZ24</accession>
    <name>A9BZ24_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_2486</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX35124.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012204405.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_2486"/>
    <dbReference type="PRIDE" id="A9BZ24"/>
    <dbReference type="EnsemblBacteria" id="ABX35124">
        <property type="protein sequence ID" value="ABX35124"/>
        <property type="gene ID" value="Daci_2486"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_2486"/>
    <dbReference type="eggNOG" id="COG3064">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_024625_2_0_4"/>
    <dbReference type="OMA" id="YYHGWRG"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR021728">
        <property type="entry name" value="DUF3300"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR40269">
        <property type="entry name" value="PTHR40269"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF11737">
        <property type="entry name" value="DUF3300"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="41"/>
            <end position="60"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="360"/>
            <end position="406"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="426"/>
            <end position="755"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="41"/>
            <end position="57"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="483"/>
            <end position="513"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="539"/>
            <end position="555"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="556"/>
            <end position="571"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="572"/>
            <end position="633"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="641"/>
            <end position="739"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX35124.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="755" mass="82138" checksum="F5BCFB4497E81233" modified="2008-01-15" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="60" xmlns="http://uniprot.org/uniprot">
    <accession>A9BZ33</accession>
    <name>A9BZ33_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Phospholipase/Carboxylesterase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_2495</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX35133.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012204414.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_2495"/>
    <dbReference type="PRIDE" id="A9BZ33"/>
    <dbReference type="EnsemblBacteria" id="ABX35133">
        <property type="protein sequence ID" value="ABX35133"/>
        <property type="gene ID" value="Daci_2495"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_2495"/>
    <dbReference type="eggNOG" id="COG0400">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_049413_5_3_4"/>
    <dbReference type="OMA" id="AMVWHSR"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016787">
        <property type="term" value="F:hydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.1820">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029058">
        <property type="entry name" value="AB_hydrolase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003140">
        <property type="entry name" value="PLipase/COase/thioEstase"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02230">
        <property type="entry name" value="Abhydrolase_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53474">
        <property type="entry name" value="SSF53474"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Abhydrolase_2" evidence="1">
        <location>
            <begin position="23"/>
            <end position="215"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF02230"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX35133.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="221" mass="24213" checksum="CB0C4A7E8DF6FC80" modified="2008-01-15" version="1">MIDLPLLALERPAQPAPGQQPWLLVLMHGVGSNEQDLFGLASFVPPQFHVLSLRAPFSMGPSAHAWFQFTVDANGTRHIHASQEEHSRALVAQTVQQAGARLDIPAQRTVAGGFSQGGIMALSLLLTQPALLRAAMCWHSRLLPEALPHQAPDAAFDGKSLWVSHGTYDNVIPLTSAHAIRSHVQRLPLQLSYHEYPSMHEIRPDELQAAMAWLQDLGKQG</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="80" xmlns="http://uniprot.org/uniprot">
    <accession>A9BZF4</accession>
    <name>A9BZF4_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Transcriptional regulator, MerR family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_2916</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX35554.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012204764.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_2916"/>
    <dbReference type="PRIDE" id="A9BZF4"/>
    <dbReference type="EnsemblBacteria" id="ABX35554">
        <property type="protein sequence ID" value="ABX35554"/>
        <property type="gene ID" value="Daci_2916"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_2916"/>
    <dbReference type="eggNOG" id="COG0789">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_060077_2_0_4"/>
    <dbReference type="OMA" id="PPANIRY"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003700">
        <property type="term" value="F:DNA-binding transcription factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0045893">
        <property type="term" value="P:positive regulation of transcription, DNA-templated"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd04784">
        <property type="entry name" value="HTH_CadR-PbrR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011791">
        <property type="entry name" value="CadR-PbrR"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009061">
        <property type="entry name" value="DNA-bd_dom_put_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000551">
        <property type="entry name" value="MerR-type_HTH_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13411">
        <property type="entry name" value="MerR_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00040">
        <property type="entry name" value="HTHMERR"/>
    </dbReference>
    <dbReference type="SMART" id="SM00422">
        <property type="entry name" value="HTH_MERR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46955">
        <property type="entry name" value="SSF46955"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50937">
        <property type="entry name" value="HTH_MERR_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HTH merR-type" evidence="1">
        <location>
            <begin position="8"/>
            <end position="77"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS50937"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX35554.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="154" mass="17211" checksum="10AA5AEF18EE1B8F" modified="2008-01-15" version="1">MSQHESARWRIGEAAKRSGVAAANIRYYEKERLLSAGVREDNQYRLYSDSDVHRLRFIRLCRAMDMSLDEVRTLLALDGASKADCVAANETLDAHLGHVRERLAELRALEHELMQLRSQCDGSASYCHLIEALHAQADEPLAPALGSSGAKRHV</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-05-25" version="88" xmlns="http://uniprot.org/uniprot">
    <accession>A9BZF9</accession>
    <name>A9BZF9_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Two component transcriptional regulator, LuxR family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ordered locus">Daci_2921</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="6" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX35559.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_2921"/>
    <dbReference type="EnsemblBacteria" id="ABX35559">
        <property type="protein sequence ID" value="ABX35559"/>
        <property type="gene ID" value="Daci_2921"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_2921"/>
    <dbReference type="eggNOG" id="COG2197">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_000445_90_8_4"/>
    <dbReference type="OMA" id="DVWVPPD"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000160">
        <property type="term" value="P:phosphorelay signal transduction system"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006355">
        <property type="term" value="P:regulation of transcription, DNA-templated"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd06170">
        <property type="entry name" value="LuxR_C_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011006">
        <property type="entry name" value="CheY-like_superfamily"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016032">
        <property type="entry name" value="Sig_transdc_resp-reg_C-effctor"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001789">
        <property type="entry name" value="Sig_transdc_resp-reg_receiver"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000792">
        <property type="entry name" value="Tscrpt_reg_LuxR_C"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00196">
        <property type="entry name" value="GerE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00072">
        <property type="entry name" value="Response_reg"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00038">
        <property type="entry name" value="HTHLUXR"/>
    </dbReference>
    <dbReference type="SMART" id="SM00421">
        <property type="entry name" value="HTH_LUXR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00448">
        <property type="entry name" value="REC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46894">
        <property type="entry name" value="SSF46894"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52172">
        <property type="entry name" value="SSF52172"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00622">
        <property type="entry name" value="HTH_LUXR_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50043">
        <property type="entry name" value="HTH_LUXR_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50110">
        <property type="entry name" value="RESPONSE_REGULATORY"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="2" id="KW-0597">Phosphoprotein</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Response regulatory" evidence="4">
        <location>
            <begin position="22"/>
            <end position="139"/>
        </location>
    </feature>
    <feature type="domain" description="HTH luxR-type" evidence="3">
        <location>
            <begin position="159"/>
            <end position="224"/>
        </location>
    </feature>
    <feature type="modified residue" description="4-aspartylphosphate" evidence="2">
        <location>
            <position position="74"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00169"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="PROSITE" id="PS50043"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="PROSITE" id="PS50110"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="ABX35559.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="229" mass="24514" checksum="05DB4FEB4F297ECB" modified="2008-01-15" version="1">MDPMSRACASRRVRLAPMSEPTLLVADDHPLFRAAVIHVLREALPQFAVLEAASAATLGAALQQHPEIELVLLDLAMPGARGFSALLHVRGEYPDVPVVVISSNDHPRVIRRAQQFGAAGFIPKSAPAEAIGTALQEVLDGGSWFPPMAAERSEADAALAARLAQLTPQQFRVLLCLADGLLNKQIAHELGLAENTVKVHVTAILKKLECYSRTQAAVLVKSLENDGTV</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="70" xmlns="http://uniprot.org/uniprot">
    <accession>A9BZG9</accession>
    <name>A9BZG9_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="6">Thiamine pyrophosphate protein central region</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ordered locus">Daci_2931</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="7" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1 2">Belongs to the TPP enzyme family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX35569.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012204779.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_2931"/>
    <dbReference type="PRIDE" id="A9BZG9"/>
    <dbReference type="EnsemblBacteria" id="ABX35569">
        <property type="protein sequence ID" value="ABX35569"/>
        <property type="gene ID" value="Daci_2931"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_2931"/>
    <dbReference type="eggNOG" id="COG3962">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_013748_6_0_4"/>
    <dbReference type="OMA" id="PNTYHLE"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016823">
        <property type="term" value="F:hydrolase activity, acting on acid carbon-carbon bonds, in ketonic substances"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000287">
        <property type="term" value="F:magnesium ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030976">
        <property type="term" value="F:thiamine pyrophosphate binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0019310">
        <property type="term" value="P:inositol catabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029035">
        <property type="entry name" value="DHS-like_NAD/FAD-binding_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR030817">
        <property type="entry name" value="Myo_inos_IolD"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029061">
        <property type="entry name" value="THDP-binding"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012000">
        <property type="entry name" value="Thiamin_PyroP_enz_cen_dom"/>
    </dbReference>
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    </dbReference>
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        <property type="entry name" value="TPP_enz"/>
    </dbReference>
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    </dbReference>
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        <property type="match status" value="1"/>
    </dbReference>
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    </dbReference>
    <dbReference type="Pfam" id="PF02775">
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    <proteinExistence type="inferred from homology"/>
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        <location>
            <begin position="8"/>
            <end position="204"/>
        </location>
    </feature>
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        <location>
            <begin position="226"/>
            <end position="357"/>
        </location>
    </feature>
    <feature type="domain" description="TPP_enzyme_C" evidence="4">
        <location>
            <begin position="428"/>
            <end position="582"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00007812"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="RuleBase" id="RU362132"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF00205"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="Pfam" id="PF02775"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="Pfam" id="PF02776"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="ABX35569.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="627" mass="67034" checksum="324A1277EAB32F60" modified="2008-01-15" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2021-06-02" version="44" xmlns="http://uniprot.org/uniprot">
    <accession>A9BZJ3</accession>
    <name>A9BZJ3_DELAS</name>
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        <submittedName>
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    </protein>
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    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
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            <authorList>
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                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
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            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
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            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
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        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
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        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
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    </dbReference>
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    <dbReference type="EnsemblBacteria" id="ABX35593">
        <property type="protein sequence ID" value="ABX35593"/>
        <property type="gene ID" value="Daci_2955"/>
    </dbReference>
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    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
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    </dbReference>
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        <property type="entry name" value="DUF2789_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF10982">
        <property type="entry name" value="DUF2789"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="77"/>
            <end position="97"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX35593.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="97" mass="10836" checksum="39C9697FF21E960A" modified="2008-01-15" version="1">MITAEPTMTNLFDQLGLDSSPEGIRQFILSHRLEKNTLLVDAPFWTDAQRALFSQQWHADATWALVVDQLSEALHSEPDLDAVPAPAASEHEQEARP</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="44" xmlns="http://uniprot.org/uniprot">
    <accession>A9BZT8</accession>
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        </submittedName>
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        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
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        <lineage>
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        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
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                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="2" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX35996.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_3358"/>
    <dbReference type="PRIDE" id="A9BZT8"/>
    <dbReference type="EnsemblBacteria" id="ABX35996">
        <property type="protein sequence ID" value="ABX35996"/>
        <property type="gene ID" value="Daci_3358"/>
    </dbReference>
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    <dbReference type="eggNOG" id="ENOG503356U">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_158034_0_0_4"/>
    <dbReference type="OMA" id="WMKAARA"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ABX35996.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="102" mass="11512" checksum="34259E9E7B48DEE3" modified="2008-01-15" version="1">MQEAAFTVTLCDYPNLPEQERNKAEARYARVLERQLGSAEQVSETLYLVEGLEDTPPEEISDDAKLAFARWMKAARAATEAGMQGLGDGECSFFEVRRGWRH</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="58" xmlns="http://uniprot.org/uniprot">
    <accession>A9C092</accession>
    <name>A9C092_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">3-demethylubiquinone-9 3-methyltransferase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_4027</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
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        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
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        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
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                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
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            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
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                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX36658.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012205852.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_4027"/>
    <dbReference type="PRIDE" id="A9C092"/>
    <dbReference type="EnsemblBacteria" id="ABX36658">
        <property type="protein sequence ID" value="ABX36658"/>
        <property type="gene ID" value="Daci_4027"/>
    </dbReference>
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        <property type="taxonomic scope" value="Bacteria"/>
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        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008168">
        <property type="term" value="F:methyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
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        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
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        <property type="entry name" value="PhnB_like"/>
        <property type="match status" value="1"/>
    </dbReference>
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    </dbReference>
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        <property type="entry name" value="3_dmu_93_MTrfase"/>
    </dbReference>
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        <property type="entry name" value="Glyas_Bleomycin-R_OHBP_Dase"/>
    </dbReference>
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        <property type="match status" value="1"/>
    </dbReference>
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    </dbReference>
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        <property type="entry name" value="SSF54593"/>
        <property type="match status" value="1"/>
    </dbReference>
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    <keyword evidence="2" id="KW-0489">Methyltransferase</keyword>
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    <keyword evidence="2" id="KW-0830">Ubiquinone</keyword>
    <feature type="domain" description="3-dmu-9_3-mt" evidence="1">
        <location>
            <begin position="8"/>
            <end position="126"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF06983"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX36658.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="167" mass="18424" checksum="8779CDFBA1CA71BB" modified="2008-01-15" version="1">MALHAGRIQPCLWFDNQGEQAAQFYTEVFPDSRITAIARYGEAGRDIHGRPAGSVMTVQFELEGQPFLALNGGPMFRFNEAVSLMVSCHTQDEIDHYWSRLSDGGDPAARQCGWLKDRYGLSWQIVPAQMASWMGGPDAAAAQRVMQALLGMQKLDIAALERAHDGP</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="57" xmlns="http://uniprot.org/uniprot">
    <accession>A9C0J9</accession>
    <name>A9C0J9_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Xylose isomerase domain protein TIM barrel</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_4442</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
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        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
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        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX37072.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012206244.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_4442"/>
    <dbReference type="PRIDE" id="A9C0J9"/>
    <dbReference type="EnsemblBacteria" id="ABX37072">
        <property type="protein sequence ID" value="ABX37072"/>
        <property type="gene ID" value="Daci_4442"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_4442"/>
    <dbReference type="eggNOG" id="COG1082">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_035063_1_0_4"/>
    <dbReference type="OMA" id="IFYFQIS"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016853">
        <property type="term" value="F:isomerase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036237">
        <property type="entry name" value="Xyl_isomerase-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013022">
        <property type="entry name" value="Xyl_isomerase-like_TIM-brl"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01261">
        <property type="entry name" value="AP_endonuc_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51658">
        <property type="entry name" value="SSF51658"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0413">Isomerase</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="AP_endonuc_2" evidence="1">
        <location>
            <begin position="22"/>
            <end position="275"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF01261"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX37072.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="298" mass="32854" checksum="FFA0BDEF1E7818D5" modified="2008-01-15" version="1">MGLLDSYGMDTITLNGSLEAKLDAIRRAGFTQVMLSARDLAGHPGGVKAAAAAVRASGLRPTGFQVLRDFEGLSDHLHHYKVDIAKSMLEMCAEIGSPVLLACSSTSRHATGDLDVIARDLRKLAMLGIPLGVKIAYEGLSWGRSVNEFTTSWDVVCRADTSNLGIGLDSFHILAAKTPLDALELIDRDKIFLVQLSDFMWHDAPTFEERMATARTFRVFPGEGVHSERLADLVLRLDRLGYRGDYSFEVFNDDYQQLPLDTVAERARRSAQWLNDDVLHRPVPLPAWARTGVRGTSV</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="52" xmlns="http://uniprot.org/uniprot">
    <accession>A9C0M4</accession>
    <name>A9C0M4_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Thioesterase superfamily protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Daci_4467</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="2" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX37097.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012206269.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_4467"/>
    <dbReference type="PRIDE" id="A9C0M4"/>
    <dbReference type="EnsemblBacteria" id="ABX37097">
        <property type="protein sequence ID" value="ABX37097"/>
        <property type="gene ID" value="Daci_4467"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_4467"/>
    <dbReference type="eggNOG" id="COG0824">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_101141_5_2_4"/>
    <dbReference type="OMA" id="SHCDPAG"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029069">
        <property type="entry name" value="HotDog_dom_sf"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54637">
        <property type="entry name" value="SSF54637"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ABX37097.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="150" mass="17198" checksum="8619D3DD47C9C91E" modified="2008-01-15" version="1">MASAFVSQVQVLFRHCDPAGIVFYPRYFEMVNDLVEEWFDRGMGLPFHTLHVQRQVGTPTVSVQCDFTAPSRWHDTLRQVLEVRRIGGASFQFDVRFEGPDGQRRLSARMTIVTMDLRSMKATPLPSDLRERLQAYLVPQDGFTDSTRTG</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2021-06-02" version="44" xmlns="http://uniprot.org/uniprot">
    <accession>A9C0N0</accession>
    <name>A9C0N0_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Daci_4473</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="2" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX37103.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012206275.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_4473"/>
    <dbReference type="EnsemblBacteria" id="ABX37103">
        <property type="protein sequence ID" value="ABX37103"/>
        <property type="gene ID" value="Daci_4473"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_4473"/>
    <dbReference type="eggNOG" id="ENOG50330UV">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_184537_1_0_4"/>
    <dbReference type="OMA" id="HAELAQY"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ABX37103.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="84" mass="9362" checksum="79489D3443E470ED" modified="2008-01-15" version="1">MEKYRFNVFGRIIAIERAQAQWRCFNVGADGKRAPALLAIPCDVTHAELAQYLYDIYHESAAASDQDIFEITPGTTNPSPRSSS</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="66" xmlns="http://uniprot.org/uniprot">
    <accession>A9C1B9</accession>
    <name>A9C1B9_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="6">Porin, gram-negative type</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ordered locus">Daci_5954</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="7" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX38582.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012207751.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_5954"/>
    <dbReference type="PRIDE" id="A9C1B9"/>
    <dbReference type="EnsemblBacteria" id="ABX38582">
        <property type="protein sequence ID" value="ABX38582"/>
        <property type="gene ID" value="Daci_5954"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_5954"/>
    <dbReference type="eggNOG" id="COG3203">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_038238_1_0_4"/>
    <dbReference type="OMA" id="MYGDAKL"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046930">
        <property type="term" value="C:pore complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015288">
        <property type="term" value="F:porin activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006811">
        <property type="term" value="P:ion transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd00342">
        <property type="entry name" value="gram_neg_porins"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.160.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR033900">
        <property type="entry name" value="Gram_neg_porin_domain"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023614">
        <property type="entry name" value="Porin_dom_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13609">
        <property type="entry name" value="Porin_4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0406">Ion transport</keyword>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-0626">Porin</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4" id="KW-0732">Signal</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1134">Transmembrane beta strand</keyword>
    <keyword evidence="3" id="KW-0813">Transport</keyword>
    <feature type="signal peptide" evidence="4">
        <location>
            <begin position="1"/>
            <end position="22"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5002736225" evidence="4">
        <location>
            <begin position="23"/>
            <end position="327"/>
        </location>
    </feature>
    <feature type="domain" description="Porin_4" evidence="5">
        <location>
            <begin position="8"/>
            <end position="303"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022452"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023065"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023114"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="Pfam" id="PF13609"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="ABX38582.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="327" mass="35284" checksum="FC5328742071C070" modified="2008-01-15" version="1">MIKMNRVALAVLAVLGSTTVMAQSSVTIYGRINTTVEREKIGDQTVNKMENNSSRWGMRGVEDLGGGLKAGFVLESGFASDTGMGSSSTGALTFGRQSEVNLSGSFGKIRMGNFFPGSYFATADYVSMHNHDTGTSSDALYFDPVWFASGLGTANKISYTTPNIGGLTVEGSVSMHEKATPARKNGYDLAVNYDVGPLALGAGYSQVDEDKQAAFRAAYTFGQFVVGGYYQRNDEQIRGTRNNFRLSGMYTLGASEFHVNLGHANKWSNIADSGANQWTLGYNYNLSKRTKVYGYYTKVDNKAGANYMTGVKGADFSSFALGVRHAF</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2021-06-02" version="57" xmlns="http://uniprot.org/uniprot">
    <accession>A9C208</accession>
    <name>A9C208_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Daci_3006</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="4" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1 2">Belongs to the UPF0125 (RnfH) family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX35644.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012204850.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_3006"/>
    <dbReference type="EnsemblBacteria" id="ABX35644">
        <property type="protein sequence ID" value="ABX35644"/>
        <property type="gene ID" value="Daci_3006"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_3006"/>
    <dbReference type="eggNOG" id="COG2914">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_150721_0_0_4"/>
    <dbReference type="OMA" id="LWGRSAP"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.10.20.280">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00460">
        <property type="entry name" value="UPF0125_RnfH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016155">
        <property type="entry name" value="Mopterin_synth/thiamin_S_b"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005346">
        <property type="entry name" value="RnfH"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037021">
        <property type="entry name" value="RnfH_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03658">
        <property type="entry name" value="Ub-RnfH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54285">
        <property type="entry name" value="SSF54285"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00010645"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00460"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ABX35644.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="114" mass="12160" checksum="1FEB3F2A0F8AED25" modified="2008-01-15" version="1">MAEPRPFLCITLACSPRAGEVVELTLQLPAGASIADAVEAAGGWQALGFAQEGPAGLWGRSAPLTQGLRDGDRVELYRPLTVDPKVARRERFARQGARATGLFQRQRPGAKAGY</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="33" xmlns="http://uniprot.org/uniprot">
    <accession>A9C2D5</accession>
    <name>A9C2D5_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Daci_3441</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="2" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX36079.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012205279.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_3441"/>
    <dbReference type="PRIDE" id="A9C2D5"/>
    <dbReference type="EnsemblBacteria" id="ABX36079">
        <property type="protein sequence ID" value="ABX36079"/>
        <property type="gene ID" value="Daci_3441"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_3441"/>
    <dbReference type="eggNOG" id="ENOG503398P">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_1292663_0_0_4"/>
    <dbReference type="OMA" id="INETADW"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010633">
        <property type="entry name" value="Phage_lambda_GpZ"/>
    </dbReference>
    <dbReference type="Pfam" id="PF06763">
        <property type="entry name" value="Minor_tail_Z"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ABX36079.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="213" mass="23162" checksum="5DC7BF6C9181E7EA" modified="2008-01-15" version="1">MATRLTAIKIGVDQIRQAADNLGRLNAEGFVDVSVTSINETADWTYEMARERITVGINLTDDYLRRRMTVVHATAGKPEAAITASGSRALMTRLATYDAQMVIVPRKTNRASRSKGLLKIPAGGKQGGVNVTVVKGAAKTLQSGFLLNLRAGAAAGEKVGVFRREGGKLKHLYGPSVYQLFAYQAPRISDEVADDLQDTFLRRVDEQVERILG</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="35" xmlns="http://uniprot.org/uniprot">
    <accession>A9C2F1</accession>
    <name>A9C2F1_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_3459</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX36095.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_3459"/>
    <dbReference type="PRIDE" id="A9C2F1"/>
    <dbReference type="EnsemblBacteria" id="ABX36095">
        <property type="protein sequence ID" value="ABX36095"/>
        <property type="gene ID" value="Daci_3459"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_3459"/>
    <dbReference type="eggNOG" id="ENOG5033JZT">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_796255_0_0_4"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="171"/>
            <end position="205"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="327"/>
            <end position="348"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Pro residues" evidence="1">
        <location>
            <begin position="176"/>
            <end position="202"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX36095.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="348" mass="36321" checksum="3CA1B6D9107D6918" modified="2008-01-15" version="1">MNTTSNNIPGAAPAAVAPQGEYPHEQMDAMALARYKVVPSHASMLWSHAVVAGHGAQQLYVGREVECQNMARKFAGAFLDGAFAFHSMAAAPTAQAAPALEAPAALLTKPALVGSCRFGVGVPERYVIDAAQRHHEQEGQREAMTAEQFADEERKRRTLWELIHGPLAAAPQAPAAPQAPAAPQAPAAPQAPAAPQAPAAPQAPAAPVGTITDAMVDAYLTAQRRTVEKADRFGRPVALHTNTVRKACRQGLLAAIGAAPAAPAVDAKAHDWRENASYGGEICAECGAAKGSRRGNAPCAWPPEPLDVCTDPYNCARCKAHPNHRKGLEHAGISRPRSAAQAKEGGAA</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-05-25" version="66" xmlns="http://uniprot.org/uniprot">
    <accession>A9C2I3</accession>
    <name>A9C2I3_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Maleylacetoacetate isomerase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ordered locus">Daci_3700</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="5" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the GST superfamily. Zeta family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX36332.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012205528.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_3700"/>
    <dbReference type="EnsemblBacteria" id="ABX36332">
        <property type="protein sequence ID" value="ABX36332"/>
        <property type="gene ID" value="Daci_3700"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_3700"/>
    <dbReference type="eggNOG" id="COG0625">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_011226_20_1_4"/>
    <dbReference type="OMA" id="CCQRIII"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016853">
        <property type="term" value="F:isomerase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009072">
        <property type="term" value="P:aromatic amino acid family metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006749">
        <property type="term" value="P:glutathione metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd03191">
        <property type="entry name" value="GST_C_Zeta"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="CDD" id="cd03042">
        <property type="entry name" value="GST_N_Zeta"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010987">
        <property type="entry name" value="Glutathione-S-Trfase_C-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036282">
        <property type="entry name" value="Glutathione-S-Trfase_C_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR040079">
        <property type="entry name" value="Glutathione_S-Trfase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004045">
        <property type="entry name" value="Glutathione_S-Trfase_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005955">
        <property type="entry name" value="GST_Zeta"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR034330">
        <property type="entry name" value="GST_Zeta_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR034333">
        <property type="entry name" value="GST_Zeta_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036249">
        <property type="entry name" value="Thioredoxin-like_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13417">
        <property type="entry name" value="GST_N_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SFLD" id="SFLDS00019">
        <property type="entry name" value="Glutathione_Transferase_(cytos"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47616">
        <property type="entry name" value="SSF47616"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52833">
        <property type="entry name" value="SSF52833"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01262">
        <property type="entry name" value="maiA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50405">
        <property type="entry name" value="GST_CTER"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50404">
        <property type="entry name" value="GST_NTER"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-0413">Isomerase</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="GST N-terminal" evidence="2">
        <location>
            <begin position="1"/>
            <end position="81"/>
        </location>
    </feature>
    <feature type="domain" description="GST C-terminal" evidence="3">
        <location>
            <begin position="86"/>
            <end position="213"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00010007"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS50404"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="PROSITE" id="PS50405"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="ABX36332.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="213" mass="23527" checksum="8D7635DBD2D60DA6" modified="2008-01-15" version="1">MKLYSFFRSGTSHRLRIALNLKGLRPDYFPVDLRVDEQAQAPFKQVNPQGLVPALTLDDGRTLIQSPAIIEWLEERHPEPPLLPADPEDRAQVRALAAIVGCDVHPINNRRILQTLRRQFGADEAAINAWCATWIADGFDAIEALLAQDTQRGDFCFGHAPTLADVYLVPQIESARRFGVDLDRWPLISAVDRACAALPAFAQAAPLAQPDAG</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="64" xmlns="http://uniprot.org/uniprot">
    <accession>A9C2W6</accession>
    <name>A9C2W6_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="9">Integrase family protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="9" type="ordered locus">Daci_4139</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="9 10" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="10" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX36770.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012205950.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_4139"/>
    <dbReference type="PRIDE" id="A9C2W6"/>
    <dbReference type="EnsemblBacteria" id="ABX36770">
        <property type="protein sequence ID" value="ABX36770"/>
        <property type="gene ID" value="Daci_4139"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_4139"/>
    <dbReference type="eggNOG" id="COG0582">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_027562_0_0_4"/>
    <dbReference type="OMA" id="KQKHFPH"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015074">
        <property type="term" value="P:DNA integration"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006310">
        <property type="term" value="P:DNA recombination"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0075713">
        <property type="term" value="P:establishment of integrated proviral latency"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046718">
        <property type="term" value="P:viral entry into host cell"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0044826">
        <property type="term" value="P:viral genome integration into host DNA"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.150.130">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.443.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.160.390">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR044068">
        <property type="entry name" value="CB"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011010">
        <property type="entry name" value="DNA_brk_join_enz"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013762">
        <property type="entry name" value="Integrase-like_cat_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002104">
        <property type="entry name" value="Integrase_catalytic"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038488">
        <property type="entry name" value="Integrase_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025166">
        <property type="entry name" value="Integrase_DNA_bind_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010998">
        <property type="entry name" value="Integrase_recombinase_N"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13356">
        <property type="entry name" value="Arm-DNA-bind_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00589">
        <property type="entry name" value="Phage_integrase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56349">
        <property type="entry name" value="SSF56349"/>
        <property type="match status" value="1"/>
    </dbReference>
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        <property type="entry name" value="CB"/>
        <property type="match status" value="1"/>
    </dbReference>
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        <property type="entry name" value="TYR_RECOMBINASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0229">DNA integration</keyword>
    <keyword evidence="3" id="KW-0233">DNA recombination</keyword>
    <keyword evidence="2 6" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4" id="KW-1179">Viral genome integration</keyword>
    <keyword evidence="5" id="KW-1160">Virus entry into host cell</keyword>
    <feature type="domain" description="Core-binding (CB)" evidence="8">
        <location>
            <begin position="97"/>
            <end position="182"/>
        </location>
    </feature>
    <feature type="domain" description="Tyr recombinase" evidence="7">
        <location>
            <begin position="207"/>
            <end position="399"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022908"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023172"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023195"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023296"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU01248"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="PROSITE" id="PS51898"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="PROSITE" id="PS51900"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="ABX36770.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="642" mass="72454" checksum="0558B200243EC644" modified="2008-01-15" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="45" xmlns="http://uniprot.org/uniprot">
    <accession>A9C2X4</accession>
    <name>A9C2X4_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
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        <name evidence="3" type="ordered locus">Daci_4147</name>
    </gene>
    <organism evidence="3 4">
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        <lineage>
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            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
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    <reference evidence="3 4" key="1">
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            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
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                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
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            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="4" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX36778.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
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    </dbReference>
    <dbReference type="STRING" id="398578.Daci_4147"/>
    <dbReference type="PRIDE" id="A9C2X4"/>
    <dbReference type="EnsemblBacteria" id="ABX36778">
        <property type="protein sequence ID" value="ABX36778"/>
        <property type="gene ID" value="Daci_4147"/>
    </dbReference>
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    </dbReference>
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    </dbReference>
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        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR03761">
        <property type="entry name" value="ICE_PFL4669"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="219"/>
            <end position="266"/>
        </location>
    </feature>
    <feature type="coiled-coil region" evidence="1">
        <location>
            <begin position="71"/>
            <end position="98"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ABX36778.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="266" mass="29187" checksum="DF0854173678B096" modified="2008-01-15" version="1">MATNEPLQLNLGSLRSAMSLTLHTHHASRIWHGRAAAEGRPGIVGLNGYIAQMNKMRRGSEQDDPYSDWWMLRIEAKLDQTKTTLQSLREQVDQALASVPPALSLGENLNVQPVKLPLFVNAQLGFAAVYLLADYDDIARKLILAHHTALIDRSTLERWLNEGAHALRSLFSLAQQYRYSGCTRDDFVSKNAAARAALEKFGELPQDVLEGTRRSKFAPPIVRRGLQQRAQSPAAAPAPNDAATTDEPATDAAPEVSAGEVEDEQA</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2021-06-02" version="38" xmlns="http://uniprot.org/uniprot">
    <accession>A9C2Y2</accession>
    <name>A9C2Y2_DELAS</name>
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        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
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    <organism evidence="1 2">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
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        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
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            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
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                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="2" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX36786.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012205964.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_4155"/>
    <dbReference type="EnsemblBacteria" id="ABX36786">
        <property type="protein sequence ID" value="ABX36786"/>
        <property type="gene ID" value="Daci_4155"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_4155"/>
    <dbReference type="eggNOG" id="ENOG5031791">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_186899_0_0_4"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ABX36786.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="92" mass="10420" checksum="238E3D82DA6B218F" modified="2008-01-15" version="1">MFPDLISPARDFEHQLGACVNAMGQDDAIGQILVFERLSGMLHMRHIASADLADTDIDAYEMVVFDGGNTGGDSWKHVFFPRQREHYFVYQV</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="54" xmlns="http://uniprot.org/uniprot">
    <accession>A9C311</accession>
    <name>A9C311_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_4184</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
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            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX36815.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012205992.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_4184"/>
    <dbReference type="PRIDE" id="A9C311"/>
    <dbReference type="EnsemblBacteria" id="ABX36815">
        <property type="protein sequence ID" value="ABX36815"/>
        <property type="gene ID" value="Daci_4184"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_4184"/>
    <dbReference type="eggNOG" id="COG3772">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_047520_0_0_4"/>
    <dbReference type="OMA" id="VAPDNDQ"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR021204">
        <property type="entry name" value="Integr_conj_element_PFL4711"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR03755">
        <property type="entry name" value="conj_TIGR03755"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="436"/>
            <end position="468"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX36815.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="468" mass="49351" checksum="29E51C0D804FD06F" modified="2008-01-15" version="1">MKRPELTNLSTKACRLLRPTVLAGLLAGALVLGGGLAWAQAGFQTGGSVIGDEVMYSIGGGSAVSMGRVAGMRSIGVGVGWNSNLICGDMSIQTTLRNQLNGVTNGFQQIMSNVIQSATSAVASLPALIIQRADPGLYNLLTNGVLQARLDFDRSKLTCRAMAEKMADTAGGQLGWSQMAEGMALRDAVSSTDAVSAIEQAETRRGNDGVPWVGGSNAGGAGQSAIRVVGDVTRAGYNLVNGRSVTDTSSIAAASCASLSCQTWTSPQQATEWATRVLGEQVQRTCDACTKTETVPGVGLTPLIQEEYEAKLEALQELVSGTRNTTFENLRAAGSTSLPITRGVIEALRDEPDQDLLARRLASEVALASVLEKALLLQRTLLTGKKEPNVAANQLAVEAVNHESDTLDQEIRNLKTELELRRELANNSPMAIIQRHGTRAAGSRGIYEGDPIPDRLDRLQKGNPGGNP</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="68" xmlns="http://uniprot.org/uniprot">
    <accession>A9C321</accession>
    <name>A9C321_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">AAA ATPase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_4194</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX36825.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012205998.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_4194"/>
    <dbReference type="PRIDE" id="A9C321"/>
    <dbReference type="EnsemblBacteria" id="ABX36825">
        <property type="protein sequence ID" value="ABX36825"/>
        <property type="gene ID" value="Daci_4194"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_4194"/>
    <dbReference type="eggNOG" id="COG0507">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="eggNOG" id="COG1112">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_007896_0_0_4"/>
    <dbReference type="OMA" id="MLENRLC"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004386">
        <property type="term" value="F:helicase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd18808">
        <property type="entry name" value="SF1_C_Upf1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003593">
        <property type="entry name" value="AAA+_ATPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045055">
        <property type="entry name" value="DNA2/NAM7-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041679">
        <property type="entry name" value="DNA2/NAM7-like_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041677">
        <property type="entry name" value="DNA2/NAM7_AAA_11"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10887">
        <property type="entry name" value="PTHR10887"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13086">
        <property type="entry name" value="AAA_11"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13087">
        <property type="entry name" value="AAA_12"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00382">
        <property type="entry name" value="AAA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="AAA" evidence="1">
        <location>
            <begin position="463"/>
            <end position="932"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="SMART" id="SM00382"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX36825.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="1126" mass="125984" checksum="E11ADEB520719083" modified="2008-01-15" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2020-08-12" version="34" xmlns="http://uniprot.org/uniprot">
    <accession>A9C330</accession>
    <name>A9C330_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Daci_4512</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="2" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX37141.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_4512"/>
    <dbReference type="EnsemblBacteria" id="ABX37141">
        <property type="protein sequence ID" value="ABX37141"/>
        <property type="gene ID" value="Daci_4512"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_4512"/>
    <dbReference type="eggNOG" id="COG1372">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_2681629_0_0_4"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR030934">
        <property type="entry name" value="Intein_C"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01443">
        <property type="entry name" value="intein_Cterm"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ABX37141.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="74" mass="8145" checksum="EE54609D0346FA2B" modified="2008-01-15" version="1">MSVEELQVGDELVSLATQTRLRMRAPRLESRQGTTYNLTVETGHTFFVGGGWGPGCITWGRAILVRMGYAGFNP</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="35" xmlns="http://uniprot.org/uniprot">
    <accession>A9C3J6</accession>
    <name>A9C3J6_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Daci_4678</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="2" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX37307.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012206477.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_4678"/>
    <dbReference type="PRIDE" id="A9C3J6"/>
    <dbReference type="EnsemblBacteria" id="ABX37307">
        <property type="protein sequence ID" value="ABX37307"/>
        <property type="gene ID" value="Daci_4678"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_4678"/>
    <dbReference type="eggNOG" id="ENOG502ZNGZ">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_1683691_0_0_4"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ABX37307.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="156" mass="16943" checksum="715DFE39CB29129D" modified="2008-01-15" version="1">MPLCLSFIATTMLKLSQLRVADTAALHLKDAAGEPLYFKDPTKGAGAVEQPVLIHVYGPGSEPYRKAQLGAQRRVMALVKKNRRALEERTPEERTADTAALLADITHSVEGLDLEGRPVREGMQVLYADPAAGWVADQVNAFAADWANFSKSAPKD</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="38" xmlns="http://uniprot.org/uniprot">
    <accession>A9C3L8</accession>
    <name>A9C3L8_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_4700</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX37329.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012206499.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_4700"/>
    <dbReference type="PRIDE" id="A9C3L8"/>
    <dbReference type="EnsemblBacteria" id="ABX37329">
        <property type="protein sequence ID" value="ABX37329"/>
        <property type="gene ID" value="Daci_4700"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_4700"/>
    <dbReference type="HOGENOM" id="CLU_2632280_0_0_4"/>
    <dbReference type="OMA" id="RRSEHTN"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="40"/>
            <end position="77"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX37329.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="77" mass="8340" checksum="9B769F6F1D0FF312" modified="2008-01-15" version="1">MQLARITRPSTPITDQAFVYRRSEHTNVAQTFARAREQLASAAAAAAPPKRRSRKASAADAPAATKLQQIPLELPSL</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="57" xmlns="http://uniprot.org/uniprot">
    <accession>A9BLJ4</accession>
    <name>A9BLJ4_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Type VI secretion-associated protein, ImpA family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Daci_3848</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="4" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX36479.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012205673.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_3848"/>
    <dbReference type="PRIDE" id="A9BLJ4"/>
    <dbReference type="EnsemblBacteria" id="ABX36479">
        <property type="protein sequence ID" value="ABX36479"/>
        <property type="gene ID" value="Daci_3848"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_3848"/>
    <dbReference type="eggNOG" id="COG3515">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_060104_0_0_4"/>
    <dbReference type="OMA" id="KPEQQFG"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010657">
        <property type="entry name" value="ImpA_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017740">
        <property type="entry name" value="TssA-like"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37951">
        <property type="entry name" value="PTHR37951"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF06812">
        <property type="entry name" value="ImpA_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR03363">
        <property type="entry name" value="VI_chp_8"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="ImpA_N" evidence="2">
        <location>
            <begin position="9"/>
            <end position="129"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="234"/>
            <end position="277"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF06812"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ABX36479.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="345" mass="37800" checksum="6A0AB0FA6B6E9691" modified="2008-01-15" version="1">MANIQDLLTETAAEPPCGPDLTYDNDFQAMESAAQGKVEQQFGDTVIPAEPPDWRDVERQASALMQRTKDLRVAVLLCRAWTILHGLPGTLQGLQLCGALLERHWEHVHPLPEDGDDYFMRMNALGTLSDVTGFVRDLRNADFLRGALGQISVRDAELMAKGNVPEDLPHLTTDELRMASARAHAEGHETLLAVTPALQELDRIRACCEQHLPSHQQPELDGLRQLLLALKQWQPQSTGDADTDAETDPAARTGAEGDTEGGTVAHPASGSAPAPARNREQAIAQLLEIAAFVERTEPSNPAPLLIRRAARFMRMGFMDILRELSPDSLAQVEVITGAHLQEQQT</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="41" xmlns="http://uniprot.org/uniprot">
    <accession>A9BLJ5</accession>
    <name>A9BLJ5_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_3849</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX36480.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012205674.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_3849"/>
    <dbReference type="PRIDE" id="A9BLJ5"/>
    <dbReference type="EnsemblBacteria" id="ABX36480">
        <property type="protein sequence ID" value="ABX36480"/>
        <property type="gene ID" value="Daci_3849"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_3849"/>
    <dbReference type="eggNOG" id="ENOG502ZSC8">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_145196_0_0_4"/>
    <dbReference type="OMA" id="IERPAAQ"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="1">
        <location>
            <begin position="1"/>
            <end position="20"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5002732279" evidence="1">
        <location>
            <begin position="21"/>
            <end position="140"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX36480.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="140" mass="15217" checksum="4D9B95FA69579009" modified="2008-01-15" version="1">MKAKCCFMALGVGLSAPAFADAGARPANAIERITIRDGTAKSEDPSIHCNSLRIDEKRARYFLRHARPSSQFNYAHAYETGSCSASAVVRFKGGRQVNLTIDGGTGWGTAENKRSIAYLYCEECTDLLDSDFAFKELAAP</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="51" xmlns="http://uniprot.org/uniprot">
    <accession>A9BLL5</accession>
    <name>A9BLL5_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">DUF2169 domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_3869</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX36500.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012205694.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_3869"/>
    <dbReference type="PRIDE" id="A9BLL5"/>
    <dbReference type="EnsemblBacteria" id="ABX36500">
        <property type="protein sequence ID" value="ABX36500"/>
        <property type="gene ID" value="Daci_3869"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_3869"/>
    <dbReference type="eggNOG" id="COG5351">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_045796_0_0_4"/>
    <dbReference type="OMA" id="HWQARVG"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018683">
        <property type="entry name" value="DUF2169"/>
    </dbReference>
    <dbReference type="Pfam" id="PF09937">
        <property type="entry name" value="DUF2169"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="DUF2169" evidence="1">
        <location>
            <begin position="50"/>
            <end position="390"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF09937"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX36500.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="438" mass="49114" checksum="70C8F8D51A796836" modified="2008-01-15" version="1">MERPSHAMPSPVESAPLPEVVNHTPWPSQYFQHVDPHGEIFHVMVSRISYTLRAVQKNGDLIEPTVLPPEQQTPLCTADEFYANVNISSVLQESDLAPYKPKCDVILTNAFAYTPDGKPHERWPAGFRFADSIIKTLQVTGPRQFERSLTSLGALRPGAPKPVTQVPLCYELAFGGPNVIRQEQLLQEFLDDRDDVRITKSQREIAQQAHHALPAFYTPNPIGCGRLPEAVHDADKAIAKLETHTQRQPQSAQHYAAPQIEALNQPYDGQQDYPVVGVGAIGRWWSPRVSLAGTHDDAWKQSQWPKSPLDHDYRYWNCAPEDQQIDYPQGGEEVMLLNLIPADKYQGIFRFKLPTQELQLLVRLNVGVVMFAPMNIDTVILDLATGTVTTVRRAIISAKTDVRQLELGTWPKGTGMELDAEMQRAASERAKPQEARRG</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="83" xmlns="http://uniprot.org/uniprot">
    <accession>A9BM37</accession>
    <name>A9BM37_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="6">Amino acid adenylation domain protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ordered locus">Daci_4753</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="7" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>pantetheine 4'-phosphate</name>
            <dbReference type="ChEBI" id="CHEBI:47942"/>
        </cofactor>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX37382.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012206552.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_4753"/>
    <dbReference type="PRIDE" id="A9BM37"/>
    <dbReference type="EnsemblBacteria" id="ABX37382">
        <property type="protein sequence ID" value="ABX37382"/>
        <property type="gene ID" value="Daci_4753"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_4753"/>
    <dbReference type="eggNOG" id="COG1020">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_000022_0_10_4"/>
    <dbReference type="OMA" id="DIVSWRI"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003824">
        <property type="term" value="F:catalytic activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0031177">
        <property type="term" value="F:phosphopantetheine binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043604">
        <property type="term" value="P:amide biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="GO" id="GO:1901566">
        <property type="term" value="P:organonitrogen compound biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="GO" id="GO:0044550">
        <property type="term" value="P:secondary metabolite biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.1200.10">
        <property type="match status" value="5"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.300.30">
        <property type="match status" value="5"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.559.10">
        <property type="match status" value="6"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.12780">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.1820">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010071">
        <property type="entry name" value="AA_adenyl_domain"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029058">
        <property type="entry name" value="AB_hydrolase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036736">
        <property type="entry name" value="ACP-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025110">
        <property type="entry name" value="AMP-bd_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045851">
        <property type="entry name" value="AMP-bd_C_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020845">
        <property type="entry name" value="AMP-binding_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000873">
        <property type="entry name" value="AMP-dep_Synth/Lig"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR042099">
        <property type="entry name" value="ANL_N_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023213">
        <property type="entry name" value="CAT-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001242">
        <property type="entry name" value="Condensatn"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010060">
        <property type="entry name" value="NRPS_synth"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020806">
        <property type="entry name" value="PKS_PP-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009081">
        <property type="entry name" value="PP-bd_ACP"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006162">
        <property type="entry name" value="Ppantetheine_attach_site"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001031">
        <property type="entry name" value="Thioesterase"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00501">
        <property type="entry name" value="AMP-binding"/>
        <property type="match status" value="5"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13193">
        <property type="entry name" value="AMP-binding_C"/>
        <property type="match status" value="5"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00668">
        <property type="entry name" value="Condensation"/>
        <property type="match status" value="6"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00550">
        <property type="entry name" value="PP-binding"/>
        <property type="match status" value="5"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00975">
        <property type="entry name" value="Thioesterase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00823">
        <property type="entry name" value="PKS_PP"/>
        <property type="match status" value="4"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47336">
        <property type="entry name" value="SSF47336"/>
        <property type="match status" value="5"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53474">
        <property type="entry name" value="SSF53474"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01733">
        <property type="entry name" value="AA-adenyl-dom"/>
        <property type="match status" value="5"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01720">
        <property type="entry name" value="NRPS-para261"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00455">
        <property type="entry name" value="AMP_BINDING"/>
        <property type="match status" value="5"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50075">
        <property type="entry name" value="CARRIER"/>
        <property type="match status" value="5"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00012">
        <property type="entry name" value="PHOSPHOPANTETHEINE"/>
        <property type="match status" value="4"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2 4" id="KW-0596">Phosphopantetheine</keyword>
    <keyword evidence="3" id="KW-0597">Phosphoprotein</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Carrier" evidence="5">
        <location>
            <begin position="1031"/>
            <end position="1105"/>
        </location>
    </feature>
    <feature type="domain" description="Carrier" evidence="5">
        <location>
            <begin position="2119"/>
            <end position="2193"/>
        </location>
    </feature>
    <feature type="domain" description="Carrier" evidence="5">
        <location>
            <begin position="3206"/>
            <end position="3280"/>
        </location>
    </feature>
    <feature type="domain" description="Carrier" evidence="5">
        <location>
            <begin position="4301"/>
            <end position="4375"/>
        </location>
    </feature>
    <feature type="domain" description="Carrier" evidence="5">
        <location>
            <begin position="5814"/>
            <end position="5891"/>
        </location>
    </feature>
    <feature type="modified residue" description="O-(pantetheine 4'-phosphoryl)serine" evidence="4">
        <location>
            <position position="1066"/>
        </location>
    </feature>
    <feature type="modified residue" description="O-(pantetheine 4'-phosphoryl)serine" evidence="4">
        <location>
            <position position="2154"/>
        </location>
    </feature>
    <feature type="modified residue" description="O-(pantetheine 4'-phosphoryl)serine" evidence="4">
        <location>
            <position position="3241"/>
        </location>
    </feature>
    <feature type="modified residue" description="O-(pantetheine 4'-phosphoryl)serine" evidence="4">
        <location>
            <position position="4336"/>
        </location>
    </feature>
    <feature type="modified residue" description="O-(pantetheine 4'-phosphoryl)serine" evidence="4">
        <location>
            <position position="5849"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001957"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022450"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022553"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00258"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="PROSITE" id="PS50075"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="ABX37382.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="6176" mass="670207" checksum="1EB1B8915E993BFB" modified="2008-01-15" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="74" xmlns="http://uniprot.org/uniprot">
    <accession>A9BMF2</accession>
    <name>A9BMF2_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">RNA polymerase, sigma-24 subunit, ECF subfamily</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_4868</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX37497.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_4868"/>
    <dbReference type="PRIDE" id="A9BMF2"/>
    <dbReference type="EnsemblBacteria" id="ABX37497">
        <property type="protein sequence ID" value="ABX37497"/>
        <property type="gene ID" value="Daci_4868"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_4868"/>
    <dbReference type="eggNOG" id="COG1595">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_047691_15_2_4"/>
    <dbReference type="OMA" id="IVQDSMM"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016987">
        <property type="term" value="F:sigma factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006352">
        <property type="term" value="P:DNA-templated transcription, initiation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR039425">
        <property type="entry name" value="RNA_pol_sigma-70-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014284">
        <property type="entry name" value="RNA_pol_sigma-70_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013249">
        <property type="entry name" value="RNA_pol_sigma70_r4_t2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013324">
        <property type="entry name" value="RNA_pol_sigma_r3/r4-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43133">
        <property type="entry name" value="PTHR43133"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08281">
        <property type="entry name" value="Sigma70_r4_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF88659">
        <property type="entry name" value="SSF88659"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR02937">
        <property type="entry name" value="sigma70-ECF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Sigma70_r4_2" evidence="1">
        <location>
            <begin position="174"/>
            <end position="226"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF08281"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX37497.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="237" mass="26874" checksum="57E76D4F58816C7E" modified="2008-01-15" version="1">MNCSRHYRTATSLRAILRKKLTVRCDNQAPHPFSPSSTSPSSGPAFLLATEQELSDFLKSVEKRAFKRSFFHVRDEEAALNIVQDSMLKLALHYGDKPINELPMLFQRILSNSTLDWFRRQKTQNALFTRMSDLEASAGDDADFDWLETYADSGQNGETARSAEDLTERAQILQSIEKEIQELPARQREAFLMRYWEEMDVAETAAAMGCSEGSVKTHCFRAIQTLSKALKAKGIEL</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="83" xmlns="http://uniprot.org/uniprot">
    <accession>A9BMH9</accession>
    <name>A9BMH9_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="4 5">Ribonuclease H</fullName>
            <shortName evidence="5">RNase H</shortName>
            <ecNumber evidence="4 5">3.1.26.4</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="5" type="primary">rnhA</name>
        <name evidence="8" type="ordered locus">Daci_4895</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="9" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="5">Endonuclease that specifically degrades the RNA of RNA-DNA hybrids.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1 5">
            <text>Endonucleolytic cleavage to 5'-phosphomonoester.</text>
            <dbReference type="EC" id="3.1.26.4"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="5">
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </cofactor>
        <text evidence="5">Binds 1 Mg(2+) ion per subunit. May bind a second metal ion at a regulatory site, or after substrate binding.</text>
    </comment>
    <comment type="subunit">
        <text evidence="3 5">Monomer.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="5">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2 5">Belongs to the RNase H family.</text>
    </comment>
    <dbReference type="EC" id="3.1.26.4" evidence="4 5"/>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX37524.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012206694.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_4895"/>
    <dbReference type="PRIDE" id="A9BMH9"/>
    <dbReference type="EnsemblBacteria" id="ABX37524">
        <property type="protein sequence ID" value="ABX37524"/>
        <property type="gene ID" value="Daci_4895"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_4895"/>
    <dbReference type="eggNOG" id="COG0328">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_030894_6_0_4"/>
    <dbReference type="OMA" id="MQEIEIF"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000287">
        <property type="term" value="F:magnesium ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003676">
        <property type="term" value="F:nucleic acid binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004523">
        <property type="term" value="F:RNA-DNA hybrid ribonuclease activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006401">
        <property type="term" value="P:RNA catabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd09278">
        <property type="entry name" value="RNase_HI_prokaryote_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.420.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00042">
        <property type="entry name" value="RNase_H"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012337">
        <property type="entry name" value="RNaseH-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002156">
        <property type="entry name" value="RNaseH_domain"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036397">
        <property type="entry name" value="RNaseH_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR022892">
        <property type="entry name" value="RNaseHI"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00075">
        <property type="entry name" value="RNase_H"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53098">
        <property type="entry name" value="SSF53098"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50879">
        <property type="entry name" value="RNASE_H"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="5" id="KW-0255">Endonuclease</keyword>
    <keyword evidence="5" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="5" id="KW-0460">Magnesium</keyword>
    <keyword evidence="5" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="5" id="KW-0540">Nuclease</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="RNase H type-1" evidence="7">
        <location>
            <begin position="1"/>
            <end position="143"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="6">
        <location>
            <begin position="129"/>
            <end position="148"/>
        </location>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <position position="9"/>
        </location>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <position position="47"/>
        </location>
        <ligand>
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
            <label>1</label>
        </ligand>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <position position="69"/>
        </location>
        <ligand>
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
            <label>1</label>
        </ligand>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <position position="135"/>
        </location>
        <ligand>
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
            <label>2</label>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00000077"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00005300"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00011245"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00012180"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00042"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="PROSITE" id="PS50879"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="ABX37524.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="148" mass="16241" checksum="4F2C9DFF3207D8F9" modified="2008-01-15" version="1">MNQVVIYTDGACKGNPGPGGWGVVLESGSARKELFGGELNTTNNRMEMMAVIEALSALRRPCDVVLYIDSQYVLKGITEWIHGWKAKGWKTASKEPVKNVELWQRLDALVQGGGHRIDWRWVKGHAGDPGNERADALANKGVDQALGR</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="71" xmlns="http://uniprot.org/uniprot">
    <accession>A9BMI2</accession>
    <name>A9BMI2_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Lytic transglycosylase catalytic</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ordered locus">Daci_4898</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="6" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the transglycosylase Slt family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX37527.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012206697.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_4898"/>
    <dbReference type="CAZy" id="GH23">
        <property type="family name" value="Glycoside Hydrolase Family 23"/>
    </dbReference>
    <dbReference type="PRIDE" id="A9BMI2"/>
    <dbReference type="EnsemblBacteria" id="ABX37527">
        <property type="protein sequence ID" value="ABX37527"/>
        <property type="gene ID" value="Daci_4898"/>
    </dbReference>
    <dbReference type="GeneID" id="60689242"/>
    <dbReference type="KEGG" id="dac:Daci_4898"/>
    <dbReference type="eggNOG" id="COG0741">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="eggNOG" id="COG1388">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_009520_1_5_4"/>
    <dbReference type="OMA" id="ARHMPTE"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016020">
        <property type="term" value="C:membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008933">
        <property type="term" value="F:lytic transglycosylase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000270">
        <property type="term" value="P:peptidoglycan metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd00118">
        <property type="entry name" value="LysM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.10.350.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018392">
        <property type="entry name" value="LysM_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036779">
        <property type="entry name" value="LysM_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023346">
        <property type="entry name" value="Lysozyme-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000189">
        <property type="entry name" value="Transglyc_AS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008258">
        <property type="entry name" value="Transglycosylase_SLT_dom_1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01476">
        <property type="entry name" value="LysM"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01464">
        <property type="entry name" value="SLT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00257">
        <property type="entry name" value="LysM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53955">
        <property type="entry name" value="SSF53955"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54106">
        <property type="entry name" value="SSF54106"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51782">
        <property type="entry name" value="LYSM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00922">
        <property type="entry name" value="TRANSGLYCOSYLASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="3">
        <location>
            <begin position="1"/>
            <end position="27"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5002734899" evidence="3">
        <location>
            <begin position="28"/>
            <end position="511"/>
        </location>
    </feature>
    <feature type="domain" description="LysM" evidence="4">
        <location>
            <begin position="415"/>
            <end position="459"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="24"/>
            <end position="58"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="468"/>
            <end position="511"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="2">
        <location>
            <begin position="481"/>
            <end position="496"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00007734"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="PROSITE" id="PS51782"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="ABX37527.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="511" mass="55800" checksum="C4B01FD178D20F6A" modified="2008-01-15" version="1">MKLLHTLLLGSLLALAGCATTSSPDLASTAPAPSTAPHSPMYPNGPLSPLGTGSAGNGGVASLETTGDLWVRIRQGFAMPDLDQDLVKDREQWYASRPDYIQRMTERSSKYLFHIVEELERRNMPTELALLPYIESAFNPQAVSTAKAAGMWQFMPATGTYFDLKQNAFRDDRRDVLASTRAALDYLQKLYDMFGDWHLALAAYNWGEGSVGRAIKRNEKLGLPTGYTDLQMPAETRMYVPKLQAVKNIVANPDAFNTELPLIENHPYFQTVTITRDIDVELVAKLADVSTDDFKALNPSFRKPVIFAAGTPEILLPWDNAKVFRRNMQAFDEGQYASWTVWTVPSTISVAEAAQRVGLGESDLRALNNIPPRMLIKAGSALMVPRGANVRADVAGHVADNGQISFAPEIVTRRTTIKARKRDTLISVANRYGVSASNLADWNDLKSSATLHAGQSLVAYLPVRASSGGNARAAKSTGTARKVAVQPQNRNAKVSVTTAPRGGKPSKVKKR</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="88" xmlns="http://uniprot.org/uniprot">
    <accession>A9BMI7</accession>
    <name>A9BMI7_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="4">DNA polymerase III subunit gamma/tau</fullName>
            <ecNumber evidence="4">2.7.7.7</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="4" type="primary">dnaX</name>
        <name evidence="7" type="ordered locus">Daci_4903</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="8" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="4">DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="4">
            <text>a 2'-deoxyribonucleoside 5'-triphosphate + DNA(n) = diphosphate + DNA(n+1)</text>
            <dbReference type="Rhea" id="RHEA:22508"/>
            <dbReference type="Rhea" id="RHEA-COMP:17339"/>
            <dbReference type="Rhea" id="RHEA-COMP:17340"/>
            <dbReference type="ChEBI" id="CHEBI:33019"/>
            <dbReference type="ChEBI" id="CHEBI:61560"/>
            <dbReference type="ChEBI" id="CHEBI:173112"/>
            <dbReference type="EC" id="2.7.7.7"/>
        </reaction>
    </comment>
    <comment type="subunit">
        <text evidence="4">DNA polymerase III contains a core (composed of alpha, epsilon and theta chains) that associates with a tau subunit. This core dimerizes to form the POLIII' complex. PolIII' associates with the gamma complex (composed of gamma, delta, delta', psi and chi chains) and with the beta chain to form the complete DNA polymerase III complex.</text>
    </comment>
    <comment type="similarity">
        <text evidence="1 4">Belongs to the DnaX/STICHEL family.</text>
    </comment>
    <dbReference type="EC" id="2.7.7.7" evidence="4"/>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX37532.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012206702.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_4903"/>
    <dbReference type="PRIDE" id="A9BMI7"/>
    <dbReference type="EnsemblBacteria" id="ABX37532">
        <property type="protein sequence ID" value="ABX37532"/>
        <property type="gene ID" value="Daci_4903"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_4903"/>
    <dbReference type="eggNOG" id="COG2812">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_006229_6_2_4"/>
    <dbReference type="OMA" id="HVDVMEM"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009360">
        <property type="term" value="C:DNA polymerase III complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003887">
        <property type="term" value="F:DNA-directed DNA polymerase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006260">
        <property type="term" value="P:DNA replication"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd18137">
        <property type="entry name" value="HLD_clamp_pol_III_gamma_tau"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.300.150">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003593">
        <property type="entry name" value="AAA+_ATPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008921">
        <property type="entry name" value="DNA_pol3_clamp-load_cplx_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR022754">
        <property type="entry name" value="DNA_pol_III_gamma-3"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012763">
        <property type="entry name" value="DNA_pol_III_sug/sutau_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045085">
        <property type="entry name" value="HLD_clamp_pol_III_gamma_tau"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038249">
        <property type="entry name" value="PolIII_tau_V_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12169">
        <property type="entry name" value="DNA_pol3_gamma3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00382">
        <property type="entry name" value="AAA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48019">
        <property type="entry name" value="SSF48019"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR02397">
        <property type="entry name" value="dnaX_nterm"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3 4" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="4" id="KW-0235">DNA replication</keyword>
    <keyword evidence="4" id="KW-0239">DNA-directed DNA polymerase</keyword>
    <keyword evidence="2 4" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="4 7" id="KW-0548">Nucleotidyltransferase</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4 7" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="AAA" evidence="6">
        <location>
            <begin position="37"/>
            <end position="184"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="5">
        <location>
            <begin position="370"/>
            <end position="410"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="5">
        <location>
            <begin position="479"/>
            <end position="555"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Acidic residues" evidence="5">
        <location>
            <begin position="502"/>
            <end position="521"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00006360"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="RuleBase" id="RU364063"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="SMART" id="SM00382"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="ABX37532.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="731" mass="77252" checksum="0144FAF2EEEC118A" modified="2008-01-15" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="69" xmlns="http://uniprot.org/uniprot">
    <accession>A9BMM3</accession>
    <name>A9BMM3_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Outer membrane chaperone Skp (OmpH)</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ordered locus">Daci_4939</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="6" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="2">Belongs to the skp family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX37568.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012206738.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_4939"/>
    <dbReference type="PRIDE" id="A9BMM3"/>
    <dbReference type="EnsemblBacteria" id="ABX37568">
        <property type="protein sequence ID" value="ABX37568"/>
        <property type="gene ID" value="Daci_4939"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_4939"/>
    <dbReference type="eggNOG" id="COG2825">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_101388_1_0_4"/>
    <dbReference type="OMA" id="EKEQYDM"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051082">
        <property type="term" value="F:unfolded protein binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.910.20">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005632">
        <property type="entry name" value="Chaperone_Skp"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR024930">
        <property type="entry name" value="Skp_dom_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR35089">
        <property type="entry name" value="PTHR35089"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03938">
        <property type="entry name" value="OmpH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF002094">
        <property type="entry name" value="OMP26_Skp"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00935">
        <property type="entry name" value="OmpH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF111384">
        <property type="entry name" value="SSF111384"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1 4" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="4">
        <location>
            <begin position="1"/>
            <end position="23"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5002735617" evidence="4">
        <location>
            <begin position="24"/>
            <end position="169"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="3">
        <location>
            <begin position="69"/>
            <end position="100"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="3">
        <location>
            <begin position="69"/>
            <end position="83"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022729"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="PIRNR" id="PIRNR002094"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="ABX37568.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="169" mass="19251" checksum="4D56A101CCEC7343" modified="2008-01-15" version="1">MKSLSSHFSLAVLLGAMAVSAHAQEFKAGFVNTDRIFREASTAKAAQSKLEQEFSKREKELVDQGNTLKSASEKFEREAPTMAESQRVSRQRQLVDQDREFQRKRREFQEDLNSRKNEELAQVLERANKVVKQVAEAEKYDVILQEAVYINPKYDITDKVIKALNGGGK</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="93" xmlns="http://uniprot.org/uniprot">
    <accession>A9BMM6</accession>
    <name>A9BMM6_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="7">1-deoxy-D-xylulose 5-phosphate reductoisomerase</fullName>
            <shortName evidence="7">DXP reductoisomerase</shortName>
            <ecNumber evidence="7">1.1.1.267</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="7">1-deoxyxylulose-5-phosphate reductoisomerase</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="7">2-C-methyl-D-erythritol 4-phosphate synthase</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="7" type="primary">dxr</name>
        <name evidence="11" type="ordered locus">Daci_4942</name>
    </gene>
    <organism evidence="11 12">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="11 12" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="12">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="12" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="12">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="7">Catalyzes the NADP-dependent rearrangement and reduction of 1-deoxy-D-xylulose-5-phosphate (DXP) to 2-C-methyl-D-erythritol 4-phosphate (MEP).</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="7">
            <text>2-C-methyl-D-erythritol 4-phosphate + NADP(+) = 1-deoxy-D-xylulose 5-phosphate + H(+) + NADPH</text>
            <dbReference type="Rhea" id="RHEA:13717"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:57783"/>
            <dbReference type="ChEBI" id="CHEBI:57792"/>
            <dbReference type="ChEBI" id="CHEBI:58262"/>
            <dbReference type="ChEBI" id="CHEBI:58349"/>
            <dbReference type="EC" id="1.1.1.267"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="7">
            <name>a divalent metal cation</name>
            <dbReference type="ChEBI" id="CHEBI:60240"/>
        </cofactor>
    </comment>
    <comment type="pathway">
        <text evidence="1 7">Isoprenoid biosynthesis; isopentenyl diphosphate biosynthesis via DXP pathway; isopentenyl diphosphate from 1-deoxy-D-xylulose 5-phosphate: step 1/6.</text>
    </comment>
    <comment type="similarity">
        <text evidence="2 7">Belongs to the DXR family.</text>
    </comment>
    <dbReference type="EC" id="1.1.1.267" evidence="7"/>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX37571.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012206741.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_4942"/>
    <dbReference type="PRIDE" id="A9BMM6"/>
    <dbReference type="EnsemblBacteria" id="ABX37571">
        <property type="protein sequence ID" value="ABX37571"/>
        <property type="gene ID" value="Daci_4942"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_4942"/>
    <dbReference type="eggNOG" id="COG0743">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_035714_4_0_4"/>
    <dbReference type="OMA" id="PIDSEHF"/>
    <dbReference type="UniPathway" id="UPA00056">
        <property type="reaction ID" value="UER00092"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030604">
        <property type="term" value="F:1-deoxy-D-xylulose-5-phosphate reductoisomerase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016853">
        <property type="term" value="F:isomerase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0070402">
        <property type="term" value="F:NADPH binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0019288">
        <property type="term" value="P:isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniPathway"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016114">
        <property type="term" value="P:terpenoid biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00183">
        <property type="entry name" value="DXP_reductoisom"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003821">
        <property type="entry name" value="DXP_reductoisomerase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013644">
        <property type="entry name" value="DXP_reductoisomerase_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013512">
        <property type="entry name" value="DXP_reductoisomerase_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR026877">
        <property type="entry name" value="DXPR_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036169">
        <property type="entry name" value="DXPR_C_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036291">
        <property type="entry name" value="NAD(P)-bd_dom_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30525">
        <property type="entry name" value="PTHR30525"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08436">
        <property type="entry name" value="DXP_redisom_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02670">
        <property type="entry name" value="DXP_reductoisom"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13288">
        <property type="entry name" value="DXPR_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF006205">
        <property type="entry name" value="Dxp_reductismrs"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51735">
        <property type="entry name" value="SSF51735"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF69055">
        <property type="entry name" value="SSF69055"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00243">
        <property type="entry name" value="Dxr"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="11" id="KW-0413">Isomerase</keyword>
    <keyword evidence="6 7" id="KW-0414">Isoprene biosynthesis</keyword>
    <keyword evidence="3 7" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="4 7" id="KW-0521">NADP</keyword>
    <keyword evidence="5 7 11" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="12" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="DXP_reductoisom" evidence="8">
        <location>
            <begin position="5"/>
            <end position="133"/>
        </location>
    </feature>
    <feature type="domain" description="DXP_redisom_C" evidence="9">
        <location>
            <begin position="147"/>
            <end position="233"/>
        </location>
    </feature>
    <feature type="domain" description="DXPR_C" evidence="10">
        <location>
            <begin position="265"/>
            <end position="381"/>
        </location>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <begin position="8"/>
            <end position="37"/>
        </location>
        <ligand>
            <name>NADP(+)</name>
            <dbReference type="ChEBI" id="CHEBI:58349"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <position position="126"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <position position="151"/>
        </location>
        <ligand>
            <name>a divalent metal cation</name>
            <dbReference type="ChEBI" id="CHEBI:60240"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <position position="153"/>
        </location>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <position position="180"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <position position="203"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <position position="225"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00005094"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00006825"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022857"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023002"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023229"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00183"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="Pfam" id="PF02670"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="9">
        <source>
            <dbReference type="Pfam" id="PF08436"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="10">
        <source>
            <dbReference type="Pfam" id="PF13288"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="EMBL" id="ABX37571.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="392" mass="42283" checksum="C37AF75A64DCE63D" modified="2008-01-15" version="1">MKQKITVLGSTGSIGTNTLDVVARHREHYEVFALSAATQVDLMLRQCAEFKPRYAVMASAPHAKLLAEQLRSNGLATEVLQSPDALEQIASHPEVDAVMAAIVGAAGLAPCLAAARAGKRLLLANKEALVVGGALFMDTVKRHGATLLPIDSEHSAIFQCLPEDRASWPDRVDSLLLTASGGPFRLRDPATLSEITPEQACAHPNFSMGRKISVDSATMMNKALEVIEARWLFDMAPDKIKVVIHPQQIVHSMVQFKDASVLAQLGTPDMRVPIASGLAWPRRIASGAAPLDFAKLSALTFEEADAVRFPGLHLSWQALLASEGTTAVLNASNEVAVAAFLERRLAFDRIHAVNLRTLETLLPPTLGSLDDLLALDAQAREIAHTVARQWQL</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="59" xmlns="http://uniprot.org/uniprot">
    <accession>A9BMX5</accession>
    <name>A9BMX5_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Band 7 protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Daci_5041</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="4" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX37670.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_5041"/>
    <dbReference type="PRIDE" id="A9BMX5"/>
    <dbReference type="EnsemblBacteria" id="ABX37670">
        <property type="protein sequence ID" value="ABX37670"/>
        <property type="gene ID" value="Daci_5041"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_5041"/>
    <dbReference type="eggNOG" id="COG0330">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_651676_0_0_4"/>
    <dbReference type="OMA" id="KIQVIIA"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.479.30">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001107">
        <property type="entry name" value="Band_7"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036013">
        <property type="entry name" value="Band_7/SPFH_dom_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01145">
        <property type="entry name" value="Band_7"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF117892">
        <property type="entry name" value="SSF117892"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="PHB" evidence="2">
        <location>
            <begin position="105"/>
            <end position="272"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="66"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF01145"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ABX37670.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="466" mass="50709" checksum="A1991CC1FECF25F4" modified="2008-01-15" version="1">MPQKQPTTANNSHHSRERENTMKATWNRIMQALTGRKSARLDGAGPADSSEPAADAGTLPGNAPRRQPVDWAVLLPTARTVRWLAIGAVVVAAGLVVVRNPPVQHLEQGTLGVRLNQFTGSVSLWRDGSVWVVPGLHTVRVFSLRDQSYRPEAMRQANGSAPLQSVEGLSLGLDLNVRYALDPASPAVKAGNLPLDIGGDIVEPAVQGLVYKVFARYTVREIFSTKRAEIAQIMETELRTRLAADGVTLRSIQIGKVDLPAEYRRGMDSLLAEELASEKMRYTLELKDKRVKETELDANADKVRREVAAEAAAREQVIAARAQEEAMKHVLPFKQRQIEQRQLEAEAERVARVKAAEGSAQARRIEANGEADARQKLAEAEAFRMDRLGKVNAEQMAREGTLVTRYPLLIQKTLADKLSDKIQVIIAPPPTNGDFIGAALLGGSRNAQAGAASVAAEDANAAVQEQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="73" xmlns="http://uniprot.org/uniprot">
    <accession>A9BN04</accession>
    <name>A9BN04_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="10">TonB-dependent hemoglobin/transferrin/lactoferrin family receptor</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="10" type="ordered locus">Daci_5070</name>
    </gene>
    <organism evidence="10 11">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="10 11" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="11">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="11" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="11">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="6">Cell outer membrane</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="1 6">Belongs to the TonB-dependent receptor family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX37699.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012206869.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_5070"/>
    <dbReference type="PRIDE" id="A9BN04"/>
    <dbReference type="EnsemblBacteria" id="ABX37699">
        <property type="protein sequence ID" value="ABX37699"/>
        <property type="gene ID" value="Daci_5070"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_5070"/>
    <dbReference type="eggNOG" id="COG4771">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_008287_19_0_4"/>
    <dbReference type="OMA" id="RVNNQYA"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009279">
        <property type="term" value="C:cell outer membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015232">
        <property type="term" value="F:heme transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.170.130.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.170.20">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR039426">
        <property type="entry name" value="BtuB-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012910">
        <property type="entry name" value="Plug_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037066">
        <property type="entry name" value="Plug_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000531">
        <property type="entry name" value="TonB-dep_rcpt_b-brl"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011276">
        <property type="entry name" value="TonB_haem/Hb_rcpt"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010949">
        <property type="entry name" value="TonB_Hb/transfer/lactofer_rcpt"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036942">
        <property type="entry name" value="TonB_rcpt_b-brl_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30069">
        <property type="entry name" value="PTHR30069"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07715">
        <property type="entry name" value="Plug"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00593">
        <property type="entry name" value="TonB_dep_Rec"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01785">
        <property type="entry name" value="TonB-hemin"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01786">
        <property type="entry name" value="TonB-hemlactrns"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-0998">Cell outer membrane</keyword>
    <keyword evidence="3 6" id="KW-0472">Membrane</keyword>
    <keyword evidence="4 10" id="KW-0675">Receptor</keyword>
    <keyword evidence="11" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="7" id="KW-0732">Signal</keyword>
    <keyword evidence="2 6" id="KW-0798">TonB box</keyword>
    <feature type="signal peptide" evidence="7">
        <location>
            <begin position="1"/>
            <end position="32"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5002732926" evidence="7">
        <location>
            <begin position="33"/>
            <end position="762"/>
        </location>
    </feature>
    <feature type="domain" description="Plug" evidence="9">
        <location>
            <begin position="85"/>
            <end position="202"/>
        </location>
    </feature>
    <feature type="domain" description="TonB_dep_Rec" evidence="8">
        <location>
            <begin position="326"/>
            <end position="757"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00009810"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023077"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023170"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023237"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="RuleBase" id="RU003357"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="Pfam" id="PF00593"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="9">
        <source>
            <dbReference type="Pfam" id="PF07715"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="EMBL" id="ABX37699.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="762" mass="82952" checksum="514DAA335CC3F03E" modified="2008-01-15" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="64" xmlns="http://uniprot.org/uniprot">
    <accession>A9BN20</accession>
    <name>A9BN20_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="7">Major facilitator superfamily MFS_1</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ordered locus">Daci_5086</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="8" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX37715.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012206885.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_5086"/>
    <dbReference type="PRIDE" id="A9BN20"/>
    <dbReference type="EnsemblBacteria" id="ABX37715">
        <property type="protein sequence ID" value="ABX37715"/>
        <property type="gene ID" value="Daci_5086"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_5086"/>
    <dbReference type="eggNOG" id="COG2814">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_001265_59_9_4"/>
    <dbReference type="OMA" id="MKDFHVG"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0022857">
        <property type="term" value="F:transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.1250.20">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011701">
        <property type="entry name" value="MFS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020846">
        <property type="entry name" value="MFS_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036259">
        <property type="entry name" value="MFS_trans_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07690">
        <property type="entry name" value="MFS_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF103473">
        <property type="entry name" value="SSF103473"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50850">
        <property type="entry name" value="MFS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4 5" id="KW-0472">Membrane</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 5" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="3 5" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="50"/>
            <end position="70"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="77"/>
            <end position="96"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="102"/>
            <end position="126"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="138"/>
            <end position="155"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="167"/>
            <end position="188"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="219"/>
            <end position="240"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="252"/>
            <end position="271"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="283"/>
            <end position="301"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="307"/>
            <end position="328"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="340"/>
            <end position="362"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="374"/>
            <end position="393"/>
        </location>
    </feature>
    <feature type="domain" description="MFS" evidence="6">
        <location>
            <begin position="10"/>
            <end position="398"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="PROSITE" id="PS50850"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="ABX37715.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="408" mass="43554" checksum="92E0252ADFEEB7CE" modified="2008-01-15" version="1">MHKNNQPMSMVQILLCGGAVVTLSMGIRHGFGLWLQPITQEMGWTRESFALAIAIQNLSWGVLGIFGGMLADRFGAFRVLLVGALLYALGLAGMAMAPTTTWFALTAGVVIGAAQAGTTYAVIYGVLGRQIPVARRSWAMGVTAAAGSFGQFFMVPVEGSLISNFGWSNALLLLSLCALMIIPLAFGLREPGFQPGNARPVRDQSAGQAVAEALRTPSFVLLTAGYFVCGFQVMFIGVHMPSYLKDYGLAPQVASISLALVGLFNIVGTYVAGNLGQRLPKRYLLSTIYFTRSVVIVLFLLAPLTPWSVYIFSAAMGLLWLSTVPLTNATVAQIFGVQHLSMLSGMVFFSHQVGSFLGVWLGGYLYDHTGSYQVVWYLAIGLGVAAGLLNLPIREAPVARLRAAQAAA</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="79" xmlns="http://uniprot.org/uniprot">
    <accession>A9BN29</accession>
    <name>A9BN29_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="4">Peptidyl-prolyl cis-trans isomerase</fullName>
            <ecNumber evidence="4">5.2.1.8</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="6" type="ordered locus">Daci_5095</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="7" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>[protein]-peptidylproline (omega=180) = [protein]-peptidylproline (omega=0)</text>
            <dbReference type="Rhea" id="RHEA:16237"/>
            <dbReference type="Rhea" id="RHEA-COMP:10747"/>
            <dbReference type="Rhea" id="RHEA-COMP:10748"/>
            <dbReference type="ChEBI" id="CHEBI:83833"/>
            <dbReference type="ChEBI" id="CHEBI:83834"/>
            <dbReference type="EC" id="5.2.1.8"/>
        </reaction>
    </comment>
    <comment type="similarity">
        <text evidence="4">Belongs to the FKBP-type PPIase family.</text>
    </comment>
    <dbReference type="EC" id="5.2.1.8" evidence="4"/>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX37724.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012206894.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_5095"/>
    <dbReference type="PRIDE" id="A9BN29"/>
    <dbReference type="EnsemblBacteria" id="ABX37724">
        <property type="protein sequence ID" value="ABX37724"/>
        <property type="gene ID" value="Daci_5095"/>
    </dbReference>
    <dbReference type="GeneID" id="60689444"/>
    <dbReference type="KEGG" id="dac:Daci_5095"/>
    <dbReference type="eggNOG" id="COG1047">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_098197_1_1_4"/>
    <dbReference type="OMA" id="AQIYPEH"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003755">
        <property type="term" value="F:peptidyl-prolyl cis-trans isomerase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.10.50.40">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR046357">
        <property type="entry name" value="PPIase_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001179">
        <property type="entry name" value="PPIase_FKBP_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00254">
        <property type="entry name" value="FKBP_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50059">
        <property type="entry name" value="FKBP_PPIASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3 4 6" id="KW-0413">Isomerase</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 3 4" id="KW-0697">Rotamase</keyword>
    <feature type="domain" description="PPIase FKBP-type" evidence="5">
        <location>
            <begin position="4"/>
            <end position="87"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00000971"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023110"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00277"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="RuleBase" id="RU003915"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="PROSITE" id="PS50059"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="ABX37724.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="173" mass="18980" checksum="224C8F8D180B35E4" modified="2008-01-15" version="1">MEITEQCVVALTWTLKDTLGEELDVLDEPVEFLVGGDDLLKRIEEALQGHGQGKTLDLHLEPEEAFGDYNESLIFLEPRALFPAELEEGMSFEASALPKGCSAVQPDLLYTVTEIYPEHVVLDGNHPLAGIALRLHLKVEGVREATEEEIGRGSAGTGFFRIQPMAPGNDTLH</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="78" xmlns="http://uniprot.org/uniprot">
    <accession>A9BN97</accession>
    <name>A9BN97_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="8">ABC transporter related</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="8" type="ordered locus">Daci_5163</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="9" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="caution">
        <text evidence="6">Lacks conserved residue(s) required for the propagation of feature annotation.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX37792.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012206962.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_5163"/>
    <dbReference type="PRIDE" id="A9BN97"/>
    <dbReference type="EnsemblBacteria" id="ABX37792">
        <property type="protein sequence ID" value="ABX37792"/>
        <property type="gene ID" value="Daci_5163"/>
    </dbReference>
    <dbReference type="GeneID" id="60689513"/>
    <dbReference type="KEGG" id="dac:Daci_5163"/>
    <dbReference type="eggNOG" id="COG0410">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_000604_1_2_4"/>
    <dbReference type="OMA" id="MDHGQMV"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003593">
        <property type="entry name" value="AAA+_ATPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003439">
        <property type="entry name" value="ABC_transporter-like_ATP-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017871">
        <property type="entry name" value="ABC_transporter-like_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00005">
        <property type="entry name" value="ABC_tran"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00382">
        <property type="entry name" value="AAA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00211">
        <property type="entry name" value="ABC_TRANSPORTER_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50893">
        <property type="entry name" value="ABC_TRANSPORTER_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3 6" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="1" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="5" id="KW-0472">Membrane</keyword>
    <keyword evidence="2 6" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4" id="KW-1278">Translocase</keyword>
    <feature type="domain" description="ABC transporter" evidence="7">
        <location>
            <begin position="6"/>
            <end position="236"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022967"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00434"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="PROSITE" id="PS50893"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="ABX37792.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="236" mass="25696" checksum="E5F2C609F5C36C3B" modified="2008-01-15" version="1">MTAPALEIKGLQAWYGESHVLHGMDLVVQPGEVVTLLGRNGAGRTSTLRAIMGLTGARKGSIRINGVEAIHLPTHRIAHLGVGYCPEERGIFSSLSCEENLMLPPPLKTGQPGMSVDEIYAMFPNLAERRHSQGTRLSGGEQQMLAVARILRTGARLLLLDEISEGLAPVIVQALARMITMLRTKGYTVVMVEQNFHFAAPLADRFYVVEHGHVVERFGASELQAKMPVLNELLGV</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="51" xmlns="http://uniprot.org/uniprot">
    <accession>A9BND0</accession>
    <name>A9BND0_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ordered locus">Daci_5196</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="5" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX37825.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012206995.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_5196"/>
    <dbReference type="PRIDE" id="A9BND0"/>
    <dbReference type="EnsemblBacteria" id="ABX37825">
        <property type="protein sequence ID" value="ABX37825"/>
        <property type="gene ID" value="Daci_5196"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_5196"/>
    <dbReference type="eggNOG" id="COG4726">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_1118736_0_0_4"/>
    <dbReference type="OMA" id="ARYGQYT"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025205">
        <property type="entry name" value="PilX/PilW_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025746">
        <property type="entry name" value="PilX_N_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13681">
        <property type="entry name" value="PilX"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF14341">
        <property type="entry name" value="PilX_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="16"/>
            <end position="35"/>
        </location>
    </feature>
    <feature type="domain" description="PilX_N" evidence="3">
        <location>
            <begin position="14"/>
            <end position="61"/>
        </location>
    </feature>
    <feature type="domain" description="PilX" evidence="2">
        <location>
            <begin position="115"/>
            <end position="238"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF13681"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF14341"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="ABX37825.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="244" mass="26651" checksum="8D3AB828E1B1FC78" modified="2008-01-15" version="1">MHRKTANHASRQQRGVALFVVIIFVMLSMLLALWASRTSLFNELVVGNDADYQRAYEAAQALLQDAELDIRGEKADGTVCTGQDNVCRTSTTAKIPLETQEIAPLLSSLGTGCSQGLCGKRGDKQDFWNNSDERLGLTLAQLTTAGVGARYGQYTGASLGSTSKPANPILADTSAADRGGWYWIEVLPYLNTKNMGLIADTPTNLLSLNLKPYVVYRITALAYGRKPNTMVVLQQTYAQQKRKN</sequence>
</entry>
<entry dataset="Swiss-Prot" created="2009-03-24" modified="2022-08-03" version="78" xmlns="http://uniprot.org/uniprot">
    <accession>A9BNJ1</accession>
    <name>ACPS_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Holo-[acyl-carrier-protein] synthase</fullName>
            <shortName evidence="1">Holo-ACP synthase</shortName>
            <ecNumber evidence="1">2.7.8.7</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="1">4'-phosphopantetheinyl transferase AcpS</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="1" type="primary">acpS</name>
        <name type="ordered locus">Daci_5257</name>
    </gene>
    <organism>
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference key="1">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain>DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="1">Transfers the 4'-phosphopantetheine moiety from coenzyme A to a Ser of acyl-carrier-protein.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>apo-[ACP] + CoA = adenosine 3',5'-bisphosphate + H(+) + holo-[ACP]</text>
            <dbReference type="Rhea" id="RHEA:12068"/>
            <dbReference type="Rhea" id="RHEA-COMP:9685"/>
            <dbReference type="Rhea" id="RHEA-COMP:9690"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:29999"/>
            <dbReference type="ChEBI" id="CHEBI:57287"/>
            <dbReference type="ChEBI" id="CHEBI:58343"/>
            <dbReference type="ChEBI" id="CHEBI:64479"/>
            <dbReference type="EC" id="2.7.8.7"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </cofactor>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="1">Belongs to the P-Pant transferase superfamily. AcpS family.</text>
    </comment>
    <dbReference type="EC" id="2.7.8.7" evidence="1"/>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX37886.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012207056.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A9BNJ1"/>
    <dbReference type="SMR" id="A9BNJ1"/>
    <dbReference type="STRING" id="398578.Daci_5257"/>
    <dbReference type="PRIDE" id="A9BNJ1"/>
    <dbReference type="EnsemblBacteria" id="ABX37886">
        <property type="protein sequence ID" value="ABX37886"/>
        <property type="gene ID" value="Daci_5257"/>
    </dbReference>
    <dbReference type="GeneID" id="60689601"/>
    <dbReference type="KEGG" id="dac:Daci_5257"/>
    <dbReference type="eggNOG" id="COG0736">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_089696_3_1_4"/>
    <dbReference type="OMA" id="DERHYAV"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008897">
        <property type="term" value="F:holo-[acyl-carrier-protein] synthase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000287">
        <property type="term" value="F:magnesium ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006633">
        <property type="term" value="P:fatty acid biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.470.20">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00101">
        <property type="entry name" value="AcpS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008278">
        <property type="entry name" value="4-PPantetheinyl_Trfase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037143">
        <property type="entry name" value="4-PPantetheinyl_Trfase_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002582">
        <property type="entry name" value="ACPS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004568">
        <property type="entry name" value="Ppantetheine-prot_Trfase_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01648">
        <property type="entry name" value="ACPS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56214">
        <property type="entry name" value="SSF56214"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00516">
        <property type="entry name" value="acpS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00556">
        <property type="entry name" value="pantethn_trn"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword id="KW-0963">Cytoplasm</keyword>
    <keyword id="KW-0275">Fatty acid biosynthesis</keyword>
    <keyword id="KW-0276">Fatty acid metabolism</keyword>
    <keyword id="KW-0444">Lipid biosynthesis</keyword>
    <keyword id="KW-0443">Lipid metabolism</keyword>
    <keyword id="KW-0460">Magnesium</keyword>
    <keyword id="KW-0479">Metal-binding</keyword>
    <keyword id="KW-1185">Reference proteome</keyword>
    <keyword id="KW-0808">Transferase</keyword>
    <feature type="chain" id="PRO_1000093873" description="Holo-[acyl-carrier-protein] synthase">
        <location>
            <begin position="1"/>
            <end position="131"/>
        </location>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <position position="8"/>
        </location>
        <ligand>
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <position position="62"/>
        </location>
        <ligand>
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000255" key="1">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00101"/>
        </source>
    </evidence>
    <sequence length="131" mass="14898" checksum="993231EAB91F4152" modified="2008-01-15" version="1">MIYGIGTDICDVRRIRASLERHGDRFAEKVLAEGELATWRARRARWPERGIRFVATRFSAKEAFSKAIGMGMVMPMTWRSCEVIKLPSGQPAIVLHGALKEWFEARNLQVHLSVTDESDYAASFCVVERRA</sequence>
</entry>
<entry dataset="Swiss-Prot" created="2009-04-14" modified="2022-08-03" version="67" xmlns="http://uniprot.org/uniprot">
    <accession>A9BNK8</accession>
    <name>RL32_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">50S ribosomal protein L32</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="1" type="primary">rpmF</name>
        <name type="ordered locus">Daci_5274</name>
    </gene>
    <organism>
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference key="1">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain>DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the bacterial ribosomal protein bL32 family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX37903.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012207072.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A9BNK8"/>
    <dbReference type="SMR" id="A9BNK8"/>
    <dbReference type="STRING" id="398578.Daci_5274"/>
    <dbReference type="PRIDE" id="A9BNK8"/>
    <dbReference type="EnsemblBacteria" id="ABX37903">
        <property type="protein sequence ID" value="ABX37903"/>
        <property type="gene ID" value="Daci_5274"/>
    </dbReference>
    <dbReference type="GeneID" id="60689618"/>
    <dbReference type="KEGG" id="dac:Daci_5274"/>
    <dbReference type="eggNOG" id="COG0333">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_129084_2_1_4"/>
    <dbReference type="OMA" id="GMHRAHD"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015934">
        <property type="term" value="C:large ribosomal subunit"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003735">
        <property type="term" value="F:structural constituent of ribosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006412">
        <property type="term" value="P:translation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00340">
        <property type="entry name" value="Ribosomal_L32"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002677">
        <property type="entry name" value="Ribosomal_L32p"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR044957">
        <property type="entry name" value="Ribosomal_L32p_bact"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011332">
        <property type="entry name" value="Ribosomal_zn-bd"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR35534">
        <property type="entry name" value="PTHR35534"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01783">
        <property type="entry name" value="Ribosomal_L32p"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF57829">
        <property type="entry name" value="SSF57829"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01031">
        <property type="entry name" value="rpmF_bact"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword id="KW-1185">Reference proteome</keyword>
    <keyword id="KW-0687">Ribonucleoprotein</keyword>
    <keyword id="KW-0689">Ribosomal protein</keyword>
    <feature type="chain" id="PRO_1000120113" description="50S ribosomal protein L32">
        <location>
            <begin position="1"/>
            <end position="60"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="1"/>
            <end position="60"/>
        </location>
    </feature>
    <evidence type="ECO:0000255" key="1">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00340"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <sequence length="60" mass="6652" checksum="970E0DC2A8B5B5FE" modified="2008-01-15" version="1">MAVQQNKKSPSKRGMHRSHNALNVPGIAVEPTTGETHLRHHISPNGVYRGRQVLKNKSEA</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="59" xmlns="http://uniprot.org/uniprot">
    <accession>A9BNM9</accession>
    <name>A9BNM9_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="8">L-lactate permease</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="9" type="ordered locus">Daci_5295</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="9 10" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="10" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="8">Transports L-lactate across the membrane. Can also transport D-lactate and glycolate.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="8">Cell inner membrane</location>
            <topology evidence="8">Multi-pass membrane protein</topology>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2 8">Belongs to the lactate permease family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX37924.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012207093.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_5295"/>
    <dbReference type="PRIDE" id="A9BNM9"/>
    <dbReference type="EnsemblBacteria" id="ABX37924">
        <property type="protein sequence ID" value="ABX37924"/>
        <property type="gene ID" value="Daci_5295"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_5295"/>
    <dbReference type="eggNOG" id="COG1620">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_021628_0_0_4"/>
    <dbReference type="OMA" id="LIVTRIH"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005887">
        <property type="term" value="C:integral component of plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015129">
        <property type="term" value="F:lactate transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003804">
        <property type="entry name" value="Lactate_perm"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30003">
        <property type="entry name" value="PTHR30003"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02652">
        <property type="entry name" value="Lactate_perm"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00795">
        <property type="entry name" value="lctP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="8" id="KW-0997">Cell inner membrane</keyword>
    <keyword evidence="4" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="7 8" id="KW-0472">Membrane</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="5 8" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="6 8" id="KW-1133">Transmembrane helix</keyword>
    <keyword evidence="3 8" id="KW-0813">Transport</keyword>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="12"/>
            <end position="33"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="40"/>
            <end position="57"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="69"/>
            <end position="89"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="117"/>
            <end position="150"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="198"/>
            <end position="215"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="222"/>
            <end position="239"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="251"/>
            <end position="268"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="303"/>
            <end position="322"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="361"/>
            <end position="385"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="397"/>
            <end position="419"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="439"/>
            <end position="457"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="519"/>
            <end position="544"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00010100"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022448"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="RuleBase" id="RU365092"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="ABX37924.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="552" mass="59222" checksum="89E745DDB4EC7812" modified="2008-01-15" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="65" xmlns="http://uniprot.org/uniprot">
    <accession>A9BNZ5</accession>
    <name>A9BNZ5_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">PHP domain protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_5411</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX38040.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012207209.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_5411"/>
    <dbReference type="PRIDE" id="A9BNZ5"/>
    <dbReference type="EnsemblBacteria" id="ABX38040">
        <property type="protein sequence ID" value="ABX38040"/>
        <property type="gene ID" value="Daci_5411"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_5411"/>
    <dbReference type="eggNOG" id="COG0613">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_067347_0_0_4"/>
    <dbReference type="OMA" id="CTWGGAT"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003824">
        <property type="term" value="F:catalytic activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004013">
        <property type="entry name" value="PHP_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003141">
        <property type="entry name" value="Pol/His_phosphatase_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016195">
        <property type="entry name" value="Pol/histidinol_Pase-like"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02811">
        <property type="entry name" value="PHP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00481">
        <property type="entry name" value="POLIIIAc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF89550">
        <property type="entry name" value="SSF89550"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="POLIIIAc" evidence="1">
        <location>
            <begin position="8"/>
            <end position="73"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="SMART" id="SM00481"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX38040.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="287" mass="30959" checksum="4E1535114F1A0FBD" modified="2008-01-15" version="1">MPKSYLNADLHSHSVVSDGTLTPEQLAERAASRGVQLSALTDHDEVGGQHRAAAAARACGMDYLTGAEISVSFAGTTVHIVGLGFDADDPALLEGLHATRDGRGPRAREMARQLELAGIEGSYEGALRFAGNPGLISRTHFARFLVESGRCRDTGEVFRHYLTEGHPGYVPHTWARLADAVRWITQAGGVAVIAHPARYALTANEEYALFSEFKAHGGQGVEVVTGSHRPSEYTIYADMAREFGLAASRGSDFHSPEESHTDLGDLPYLPGQLTPVWELLSERIQLA</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="59" xmlns="http://uniprot.org/uniprot">
    <accession>A9BP35</accession>
    <name>A9BP35_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">NUDIX hydrolase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_5451</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX38080.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_5451"/>
    <dbReference type="PRIDE" id="A9BP35"/>
    <dbReference type="EnsemblBacteria" id="ABX38080">
        <property type="protein sequence ID" value="ABX38080"/>
        <property type="gene ID" value="Daci_5451"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_5451"/>
    <dbReference type="eggNOG" id="COG0494">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_128620_0_0_4"/>
    <dbReference type="OMA" id="NTEHVFG"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008828">
        <property type="term" value="F:dATP pyrophosphohydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0019177">
        <property type="term" value="F:dihydroneopterin triphosphate pyrophosphohydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046656">
        <property type="term" value="P:folic acid biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003564">
        <property type="entry name" value="DHNTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015797">
        <property type="entry name" value="NUDIX_hydrolase-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000086">
        <property type="entry name" value="NUDIX_hydrolase_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00293">
        <property type="entry name" value="NUDIX"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR01404">
        <property type="entry name" value="NPPPHYDRLASE"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55811">
        <property type="entry name" value="SSF55811"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51462">
        <property type="entry name" value="NUDIX"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Nudix hydrolase" evidence="1">
        <location>
            <begin position="6"/>
            <end position="153"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS51462"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX38080.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="161" mass="18500" checksum="B9C74792D9BFB1C9" modified="2008-01-15" version="1">MPAMPGYKIPESVLVVIYRDDGQVLLMRRTAPAPEGGEFWQSVTGSKDHEGESWRETAVREVREETGIDPEAPGCLLQDWALENIYTIYPAWQHRYAPGVWHNRERVFGLRIPSYTPVFLNPREHTASAWHHWHDAAERCYSPSNAEAILMLPRFASLELD</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="53" xmlns="http://uniprot.org/uniprot">
    <accession>A9BPM4</accession>
    <name>A9BPM4_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="6">LrgB family protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ordered locus">Daci_0245</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="7" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX32891.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012202184.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_0245"/>
    <dbReference type="PRIDE" id="A9BPM4"/>
    <dbReference type="EnsemblBacteria" id="ABX32891">
        <property type="protein sequence ID" value="ABX32891"/>
        <property type="gene ID" value="Daci_0245"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_0245"/>
    <dbReference type="eggNOG" id="COG1346">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_082099_2_0_4"/>
    <dbReference type="OMA" id="PLHTAYA"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007300">
        <property type="entry name" value="CidB/LrgB"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30249">
        <property type="entry name" value="PTHR30249"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04172">
        <property type="entry name" value="LrgB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4 5" id="KW-0472">Membrane</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 5" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="3 5" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="29"/>
            <end position="48"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="90"/>
            <end position="112"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="148"/>
            <end position="168"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="204"/>
            <end position="225"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="ABX32891.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="230" mass="24601" checksum="E2985BBF6ED07C8E" modified="2008-01-15" version="1">MSDQAIGLLSLLATLACYAANKRVYRRHPHPLLMPIVATPMVLIALALPTHVRYPQYIAQTHWLVWLLGPTTVAFALPLHENRHLLRKHWMSIATGVLVASGVSIATTIWFAQAFGLPVDLQKGLAVRSVTTPFAIEAERVLGGPTDLAALFVLLTGVSGMLMGETILRLLPHVRSKLAAGAILGGAAHGSGVAKARQFGDVQAVVASLVMMIAGALNVVVAPWVRVLFF</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="98" xmlns="http://uniprot.org/uniprot">
    <accession>A9BPX3</accession>
    <name>A9BPX3_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="9">Heavy metal translocating P-type ATPase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="9" type="ordered locus">Daci_0446</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="9 10" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="10" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="6">Cell membrane</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="1 6">Belongs to the cation transport ATPase (P-type) (TC 3.A.3) family. Type IB subfamily.</text>
    </comment>
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        <property type="protein sequence ID" value="ABX33092.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_0446"/>
    <dbReference type="PRIDE" id="A9BPX3"/>
    <dbReference type="EnsemblBacteria" id="ABX33092">
        <property type="protein sequence ID" value="ABX33092"/>
        <property type="gene ID" value="Daci_0446"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_0446"/>
    <dbReference type="eggNOG" id="COG2217">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_001771_11_3_4"/>
    <dbReference type="OMA" id="ITFFGWM"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016887">
        <property type="term" value="F:ATP hydrolysis activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0019829">
        <property type="term" value="F:ATPase-coupled cation transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016491">
        <property type="term" value="F:oxidoreductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
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        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.1110.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.1000">
        <property type="match status" value="1"/>
    </dbReference>
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        <property type="entry name" value="ATPase_P-typ_cyto_dom_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018303">
        <property type="entry name" value="ATPase_P-typ_P_site"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023298">
        <property type="entry name" value="ATPase_P-typ_TM_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008250">
        <property type="entry name" value="ATPase_P-typ_transduc_dom_A_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009078">
        <property type="entry name" value="Ferritin-like_SF"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036412">
        <property type="entry name" value="HAD-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023214">
        <property type="entry name" value="HAD_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045800">
        <property type="entry name" value="HMBD"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027256">
        <property type="entry name" value="P-typ_ATPase_IB"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001757">
        <property type="entry name" value="P_typ_ATPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR044492">
        <property type="entry name" value="P_typ_ATPase_HD_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012348">
        <property type="entry name" value="RNR-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011017">
        <property type="entry name" value="TRASH_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007029">
        <property type="entry name" value="YHS_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF19335">
        <property type="entry name" value="HMBD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04945">
        <property type="entry name" value="YHS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SFLD" id="SFLDF00027">
        <property type="entry name" value="p-type_atpase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00746">
        <property type="entry name" value="TRASH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47240">
        <property type="entry name" value="SSF47240"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56784">
        <property type="entry name" value="SSF56784"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF81653">
        <property type="entry name" value="SSF81653"/>
        <property type="match status" value="1"/>
    </dbReference>
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        <property type="entry name" value="SSF81660"/>
        <property type="match status" value="1"/>
    </dbReference>
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        <property type="entry name" value="SSF81665"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01525">
        <property type="entry name" value="ATPase-IB_hvy"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01494">
        <property type="entry name" value="ATPase_P-type"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00154">
        <property type="entry name" value="ATPASE_E1_E2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="6" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="5 6" id="KW-0472">Membrane</keyword>
    <keyword evidence="6" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="6" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-1278">Translocase</keyword>
    <keyword evidence="2 6" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="4 6" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="176"/>
            <end position="193"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="205"/>
            <end position="224"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="236"/>
            <end position="255"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="275"/>
            <end position="293"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="428"/>
            <end position="450"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="456"/>
            <end position="479"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="772"/>
            <end position="791"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="797"/>
            <end position="819"/>
        </location>
    </feature>
    <feature type="domain" description="TRASH" evidence="8">
        <location>
            <begin position="54"/>
            <end position="91"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="7">
        <location>
            <begin position="1"/>
            <end position="53"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="7">
        <location>
            <begin position="101"/>
            <end position="124"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00006024"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022967"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
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        <source>
            <dbReference type="RuleBase" id="RU362081"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
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        <source>
            <dbReference type="SMART" id="SM00746"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="ABX33092.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="826" mass="86269" checksum="026CFBFAE903563E" modified="2008-01-15" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="54" xmlns="http://uniprot.org/uniprot">
    <accession>A9BQ24</accession>
    <name>A9BQ24_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Putative transcriptional regulator, GntR family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_0593</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
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        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
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        </lineage>
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    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX33239.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_0593"/>
    <dbReference type="PRIDE" id="A9BQ24"/>
    <dbReference type="EnsemblBacteria" id="ABX33239">
        <property type="protein sequence ID" value="ABX33239"/>
        <property type="gene ID" value="Daci_0593"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_0593"/>
    <dbReference type="eggNOG" id="COG1167">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_017584_0_6_4"/>
    <dbReference type="OMA" id="GGCFNNY"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
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        <property type="project" value="InterPro"/>
    </dbReference>
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        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009058">
        <property type="term" value="P:biosynthetic process"/>
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    </dbReference>
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    </dbReference>
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        <property type="match status" value="1"/>
    </dbReference>
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        <property type="entry name" value="Aminotransferase_I/II"/>
    </dbReference>
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        <property type="entry name" value="PyrdxlP-dep_Trfase"/>
    </dbReference>
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        <property type="entry name" value="PyrdxlP-dep_Trfase_major"/>
    </dbReference>
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        <property type="entry name" value="PyrdxlP-dep_Trfase_small"/>
    </dbReference>
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    </dbReference>
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    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
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        <location>
            <begin position="107"/>
            <end position="442"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF00155"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX33239.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="450" mass="49362" checksum="910EAF2B5AC8F8E3" modified="2008-01-15" version="1">MRRPFTPATKYPHCRRKSERTIRTPLFTCGRPVPHDGMAIHTSPPAWRAPQRPGTAFFMTTWTLADRAAKMNPSAIREILKLTDRPGIISMAGGLPSPLAFPLDEFTQACQSVMQRDGASALQYATSEGFAPLRQAVADFLPWEVDPDQVLITTGSQQALDLIGKVFLDRGSRMLVEKPTYLGALQAFAPQEPIPVGVDSDDDGILVEDFAAKAGTGADKARLAYVLPNFQNPTGRTMAEARRQALVDKARELNIPLIEDNPYGDLWFEQAPALPLAARNPEGVIYLGSFSKVLAPGLRIGFLVAPKSVYNKLLQAKQAADLHTPGFNQRVVSEVIKDGFLDRHVPTIRAMYKRQRDAMLAALEREMAGLDVQWTRPVGGMFLWVRLPKGMDAQKLLPAAVERGTAFVPGAPFYADEPQANTLRLSYVTVSAEQIDKGIAALADAIRSTM</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="69" xmlns="http://uniprot.org/uniprot">
    <accession>A9BQ87</accession>
    <name>A9BQ87_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Glutathione S-transferase domain</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Daci_0851</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="4" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX33497.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012202783.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_0851"/>
    <dbReference type="PRIDE" id="A9BQ87"/>
    <dbReference type="EnsemblBacteria" id="ABX33497">
        <property type="protein sequence ID" value="ABX33497"/>
        <property type="gene ID" value="Daci_0851"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_0851"/>
    <dbReference type="eggNOG" id="COG0625">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_011226_12_2_4"/>
    <dbReference type="OMA" id="VDIGTIA"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016740">
        <property type="term" value="F:transferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006749">
        <property type="term" value="P:glutathione metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010987">
        <property type="entry name" value="Glutathione-S-Trfase_C-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036282">
        <property type="entry name" value="Glutathione-S-Trfase_C_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR040079">
        <property type="entry name" value="Glutathione_S-Trfase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004045">
        <property type="entry name" value="Glutathione_S-Trfase_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036249">
        <property type="entry name" value="Thioredoxin-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR034343">
        <property type="entry name" value="YibF"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR42673:SF12">
        <property type="entry name" value="PTHR42673:SF12"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13417">
        <property type="entry name" value="GST_N_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SFLD" id="SFLDS00019">
        <property type="entry name" value="Glutathione_Transferase_(cytos"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47616">
        <property type="entry name" value="SSF47616"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52833">
        <property type="entry name" value="SSF52833"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50405">
        <property type="entry name" value="GST_CTER"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50404">
        <property type="entry name" value="GST_NTER"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="GST N-terminal" evidence="1">
        <location>
            <begin position="1"/>
            <end position="78"/>
        </location>
    </feature>
    <feature type="domain" description="GST C-terminal" evidence="2">
        <location>
            <begin position="83"/>
            <end position="206"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS50404"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS50405"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ABX33497.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="206" mass="22817" checksum="1C9BBA3964528538" modified="2008-01-15" version="1">MKLIGSSTSAYVRKVRVVLAEKRLDYQFVEENPWSRELSPGTGNPLGKVPRLVMDGSDAMFDSRVIVEYLDTLSPVGKLIPGTGRERAEIKTWEALADGVLDAGALARLEATWDGRSEEQRCQAWIDRQLAKVRAALNVMSQGLGDKPYCCGIHFTLADVCVGCALGWLDFRFPELDWRADHPNLATLQAKLAERASFATTRPPQP</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="54" xmlns="http://uniprot.org/uniprot">
    <accession>A9BQ90</accession>
    <name>A9BQ90_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="1">YaeQ family protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Daci_0854</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="2" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX33500.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012202786.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_0854"/>
    <dbReference type="PRIDE" id="A9BQ90"/>
    <dbReference type="EnsemblBacteria" id="ABX33500">
        <property type="protein sequence ID" value="ABX33500"/>
        <property type="gene ID" value="Daci_0854"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_0854"/>
    <dbReference type="eggNOG" id="COG4681">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_096741_0_0_4"/>
    <dbReference type="OMA" id="WIELGQP"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.10.640.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011335">
        <property type="entry name" value="Restrct_endonuc-II-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009822">
        <property type="entry name" value="YaeQ"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038590">
        <property type="entry name" value="YaeQ_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR38784">
        <property type="entry name" value="PTHR38784"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07152">
        <property type="entry name" value="YaeQ"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF011484">
        <property type="entry name" value="YaeQ"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM01322">
        <property type="entry name" value="YaeQ"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52980">
        <property type="entry name" value="SSF52980"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ABX33500.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="186" mass="20556" checksum="C7D00257CD452F82" modified="2008-01-15" version="1">MALKSTIFKANLSIADIDHGYYADHALTLARHPSETDERMMVRLVALALNAHQLNDMCKGDGTLAFGAGLSDPEDPDVSLTDFTGAKRLWIEVGQPEEKPIAKACNKSDAVVLYAFHHAAEVWWKGLEGKLARLNKLQVWRIPSETSQSLAELAERSMQLQATIQEGALTLSSNLGTVFIEPLRWK</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="48" xmlns="http://uniprot.org/uniprot">
    <accession>A9BQC7</accession>
    <name>A9BQC7_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="7">RDD domain containing protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ordered locus">Daci_0891</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="8" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX33537.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012202823.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="PRIDE" id="A9BQC7"/>
    <dbReference type="EnsemblBacteria" id="ABX33537">
        <property type="protein sequence ID" value="ABX33537"/>
        <property type="gene ID" value="Daci_0891"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_0891"/>
    <dbReference type="eggNOG" id="COG1714">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_053152_3_2_4"/>
    <dbReference type="OMA" id="YVGFWAR"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010432">
        <property type="entry name" value="RDD"/>
    </dbReference>
    <dbReference type="Pfam" id="PF06271">
        <property type="entry name" value="RDD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4 5" id="KW-0472">Membrane</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 5" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="3 5" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="12"/>
            <end position="39"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="51"/>
            <end position="70"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="103"/>
            <end position="122"/>
        </location>
    </feature>
    <feature type="domain" description="RDD" evidence="6">
        <location>
            <begin position="8"/>
            <end position="135"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="Pfam" id="PF06271"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="ABX33537.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="152" mass="17104" checksum="8C3D3B8C1C893289" modified="2008-01-15" version="1">MQDDDLEYVGFWARTGAALIDTVILLVLMLPALISIYGWEYLESEKLLHGPADFVISWVLPAIAVVIFWIKKQATPGKMLIAARIVDAQTGADMSTRQAIIRYLAYFVSIIPLCLGLIWVAFDPRKQGWHDKIAGTVVVRPKHRGVQPVKFR</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="63" xmlns="http://uniprot.org/uniprot">
    <accession>A9BQP7</accession>
    <name>A9BQP7_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Extradiol ring-cleavage dioxygenase class III protein subunit B</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_0103</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX32749.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012202042.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_0103"/>
    <dbReference type="PRIDE" id="A9BQP7"/>
    <dbReference type="EnsemblBacteria" id="ABX32749">
        <property type="protein sequence ID" value="ABX32749"/>
        <property type="gene ID" value="Daci_0103"/>
    </dbReference>
    <dbReference type="GeneID" id="60690510"/>
    <dbReference type="KEGG" id="dac:Daci_0103"/>
    <dbReference type="eggNOG" id="COG3384">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_078149_1_1_4"/>
    <dbReference type="OMA" id="TLMNTHW"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051213">
        <property type="term" value="F:dioxygenase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008198">
        <property type="term" value="F:ferrous iron binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006725">
        <property type="term" value="P:cellular aromatic compound metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004183">
        <property type="entry name" value="Xdiol_dOase_suB"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02900">
        <property type="entry name" value="LigB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0223">Dioxygenase</keyword>
    <keyword evidence="2" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="LigB" evidence="1">
        <location>
            <begin position="9"/>
            <end position="253"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF02900"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX32749.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="272" mass="29893" checksum="39E87F0E14D5FDD6" modified="2008-01-15" version="1">MSLVFAGVCSHAPGITGRAHLADPATRDAFHAAFRDMGARLEAARPDAVIVIAAEHFANFFMNNMPAYAIGMADHYEGPIEDPAWLGIERHRIPGNAELSRRLITEVMQTVDVAFAEEWKFDHGIMVPLHFLTPAYDKDIIPVNINCQGPPLTPLHRAWAFGEALRRACDKAPERIAIVGTGGISHWPATPDSGKVNWEWDQQFMDRWCRNDRDALLSYTDAETYRDGGQGGFEIRSFIAVAAAARGAGQVLYCQPIPIFAVSCTAATMEVA</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="56" xmlns="http://uniprot.org/uniprot">
    <accession>A9BQP8</accession>
    <name>A9BQP8_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Extradiol ring-cleavage dioxygenase LigAB LigA subunit</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_0104</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX32750.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012202043.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_0104"/>
    <dbReference type="PRIDE" id="A9BQP8"/>
    <dbReference type="EnsemblBacteria" id="ABX32750">
        <property type="protein sequence ID" value="ABX32750"/>
        <property type="gene ID" value="Daci_0104"/>
    </dbReference>
    <dbReference type="GeneID" id="60690511"/>
    <dbReference type="KEGG" id="dac:Daci_0104"/>
    <dbReference type="eggNOG" id="ENOG5032UMG">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_2274945_0_0_4"/>
    <dbReference type="OMA" id="IAWADYL"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051213">
        <property type="term" value="F:dioxygenase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.700.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036622">
        <property type="entry name" value="LigA_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011986">
        <property type="entry name" value="Xdiol_dOase_LigA"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07746">
        <property type="entry name" value="LigA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48076">
        <property type="entry name" value="SSF48076"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0223">Dioxygenase</keyword>
    <keyword evidence="2" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="LigA" evidence="1">
        <location>
            <begin position="6"/>
            <end position="81"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF07746"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX32750.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="108" mass="12242" checksum="23273F1AFEB2C0E8" modified="2008-01-15" version="1">MSLYTMQKFLFQLNREPEVQRRFAEDRAALLAEYALEPEEYEAMFHGDIGKLYVLGCNGQLLMHFAPLLGMPWADYLQAMRDGVQKHGPVRAGVYAMTTATNEKIAGV</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="55" xmlns="http://uniprot.org/uniprot">
    <accession>A9BQP9</accession>
    <name>A9BQP9_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ordered locus">Daci_0105</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="5" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Periplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the UPF0065 (bug) family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX32751.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012202044.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_0105"/>
    <dbReference type="PRIDE" id="A9BQP9"/>
    <dbReference type="EnsemblBacteria" id="ABX32751">
        <property type="protein sequence ID" value="ABX32751"/>
        <property type="gene ID" value="Daci_0105"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_0105"/>
    <dbReference type="eggNOG" id="COG3181">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_045683_0_0_4"/>
    <dbReference type="OMA" id="NWPEFRG"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0042597">
        <property type="term" value="C:periplasmic space"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.190.150">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005064">
        <property type="entry name" value="BUG"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR042100">
        <property type="entry name" value="Bug_dom1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006311">
        <property type="entry name" value="TAT_signal"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019546">
        <property type="entry name" value="TAT_signal_bac_arc"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR42928">
        <property type="entry name" value="PTHR42928"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF10518">
        <property type="entry name" value="TAT_signal"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03401">
        <property type="entry name" value="TctC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF017082">
        <property type="entry name" value="YflP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51318">
        <property type="entry name" value="TAT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="3">
        <location>
            <begin position="1"/>
            <end position="26"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5002732424" evidence="3">
        <location>
            <begin position="27"/>
            <end position="330"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004418"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00006987"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="ABX32751.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="330" mass="34439" checksum="E05A688F852837BC" modified="2008-01-15" version="1">MQRRHFLQSTAATTAAALMLPGLSQAQPGSPAGTWPAKPLRIIVPFTPGGTTDLVARLVGTELGKSLGQPVIVENKPGAGTVIGVDYVSKQPADGYTLVCVANSFTANKTLVKNLPYDTTRDLKPVALMGLSEHVLATHPGSGLKTLADLRSRAKARPGELSYASFGNGTSAHLSGALLCQEMGIDMVHIPYKGQGPALADLLGGQVDVMFGNWPEFRGHVQSGKLVALGMATRQRSQFAPQVPTLAEQGVALESNSWQGLLAPGATPDALVQRINAAVVKALAEPAVVDAFARGGIVSQAGTAQQFAAFVTSEIAKYEAIIRRANITLG</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="55" xmlns="http://uniprot.org/uniprot">
    <accession>A9BR10</accession>
    <name>A9BR10_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="4">O-antigen polymerase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ordered locus">Daci_0319</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="5" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX32965.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012202258.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_0319"/>
    <dbReference type="PRIDE" id="A9BR10"/>
    <dbReference type="EnsemblBacteria" id="ABX32965">
        <property type="protein sequence ID" value="ABX32965"/>
        <property type="gene ID" value="Daci_0319"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_0319"/>
    <dbReference type="eggNOG" id="COG3307">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_049451_0_1_4"/>
    <dbReference type="OMA" id="TNAIQWG"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007016">
        <property type="entry name" value="O-antigen_ligase-related"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04932">
        <property type="entry name" value="Wzy_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2 3" id="KW-0472">Membrane</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="3" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="3">
        <location>
            <begin position="34"/>
            <end position="50"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="3">
        <location>
            <begin position="57"/>
            <end position="75"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="3">
        <location>
            <begin position="87"/>
            <end position="104"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="3">
        <location>
            <begin position="111"/>
            <end position="135"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="3">
        <location>
            <begin position="147"/>
            <end position="164"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="3">
        <location>
            <begin position="171"/>
            <end position="190"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="3">
        <location>
            <begin position="196"/>
            <end position="215"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="3">
        <location>
            <begin position="222"/>
            <end position="240"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="3">
        <location>
            <begin position="324"/>
            <end position="348"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="3">
        <location>
            <begin position="368"/>
            <end position="384"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="3">
        <location>
            <begin position="390"/>
            <end position="408"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="ABX32965.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="422" mass="47087" checksum="F0A6383586C52FA5" modified="2008-01-15" version="1">MRFDKSKLPGLLTTLAAILVPGLALWLRSGYSYGAGLMVLGALCFLPRWVRYRQSNGTWLLVALFLGMAVMWYFLSVLDGGTGQFDRPVKFILGAVSLLFAMCYPPTARIFLWGIPLGSAGAGFMALWQVCVLGMERATGYTNAIQWGNMALLLGCFSCIYAVSFWHQRSLLWRLLVLAAAALGALASLLSGSRGGWLALLPMFFMLMVLVRMYRPQYFGRLLLGCAAIVVALATVMAFIPRVSERVDEVYLDVSTYLYAGNSNTSLGTRLEQYRLAVQMIGEKPLLGWGMQGYVDEMHRRVAAGSYGQSIREYNFIHNDFLDIWVKLGVPGVLLQAALFISLLWLFWPSRRRMALWPADSTPWREALLLRILGSLMPAMYLAFGMSQQFFVHNSGIVFFVFLVVALWTSLHGLERASGAVR</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="95" xmlns="http://uniprot.org/uniprot">
    <accession>A9BR31</accession>
    <name>A9BR31_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="2 4">Orotate phosphoribosyltransferase</fullName>
            <shortName evidence="4">OPRT</shortName>
            <shortName evidence="4">OPRTase</shortName>
            <ecNumber evidence="2 4">2.4.2.10</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="4" type="primary">pyrE</name>
        <name evidence="6" type="ordered locus">Daci_0340</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="7" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="4">Catalyzes the transfer of a ribosyl phosphate group from 5-phosphoribose 1-diphosphate to orotate, leading to the formation of orotidine monophosphate (OMP).</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="4">
            <text>diphosphate + orotidine 5'-phosphate = 5-phospho-alpha-D-ribose 1-diphosphate + orotate</text>
            <dbReference type="Rhea" id="RHEA:10380"/>
            <dbReference type="ChEBI" id="CHEBI:30839"/>
            <dbReference type="ChEBI" id="CHEBI:33019"/>
            <dbReference type="ChEBI" id="CHEBI:57538"/>
            <dbReference type="ChEBI" id="CHEBI:58017"/>
            <dbReference type="EC" id="2.4.2.10"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="4">
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </cofactor>
    </comment>
    <comment type="pathway">
        <text evidence="1 4">Pyrimidine metabolism; UMP biosynthesis via de novo pathway; UMP from orotate: step 1/2.</text>
    </comment>
    <comment type="subunit">
        <text evidence="4">Homodimer.</text>
    </comment>
    <comment type="similarity">
        <text evidence="4">Belongs to the purine/pyrimidine phosphoribosyltransferase family. PyrE subfamily.</text>
    </comment>
    <dbReference type="EC" id="2.4.2.10" evidence="2 4"/>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX32986.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_0340"/>
    <dbReference type="PRIDE" id="A9BR31"/>
    <dbReference type="EnsemblBacteria" id="ABX32986">
        <property type="protein sequence ID" value="ABX32986"/>
        <property type="gene ID" value="Daci_0340"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_0340"/>
    <dbReference type="eggNOG" id="COG0461">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_074878_0_1_4"/>
    <dbReference type="OMA" id="MKAYQRQ"/>
    <dbReference type="UniPathway" id="UPA00070">
        <property type="reaction ID" value="UER00119"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000287">
        <property type="term" value="F:magnesium ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004588">
        <property type="term" value="F:orotate phosphoribosyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0044205">
        <property type="term" value="P:'de novo' UMP biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniPathway"/>
    </dbReference>
    <dbReference type="CDD" id="cd06223">
        <property type="entry name" value="PRTases_typeI"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.2020">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01208">
        <property type="entry name" value="PyrE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023031">
        <property type="entry name" value="OPRT"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004467">
        <property type="entry name" value="Or_phspho_trans_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000836">
        <property type="entry name" value="PRibTrfase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029057">
        <property type="entry name" value="PRTase-like"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00156">
        <property type="entry name" value="Pribosyltran"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53271">
        <property type="entry name" value="SSF53271"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00336">
        <property type="entry name" value="pyrE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4 6" id="KW-0328">Glycosyltransferase</keyword>
    <keyword evidence="4" id="KW-0460">Magnesium</keyword>
    <keyword evidence="3 4" id="KW-0665">Pyrimidine biosynthesis</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4 6" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Pribosyltran" evidence="5">
        <location>
            <begin position="51"/>
            <end position="161"/>
        </location>
    </feature>
    <feature type="region of interest" description="Orotate binding" evidence="4">
        <location>
            <begin position="42"/>
            <end position="43"/>
        </location>
    </feature>
    <feature type="region of interest" description="5-phosphoribose 1-diphosphate binding" evidence="4">
        <location>
            <begin position="80"/>
            <end position="81"/>
        </location>
    </feature>
    <feature type="region of interest" description="5-phosphoribose 1-diphosphate binding" evidence="4">
        <location>
            <begin position="131"/>
            <end position="139"/>
        </location>
    </feature>
    <feature type="binding site" evidence="4">
        <location>
            <position position="34"/>
        </location>
        <ligand>
            <name>5-phospho-alpha-D-ribose 1-diphosphate</name>
            <dbReference type="ChEBI" id="CHEBI:58017"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="4">
        <location>
            <position position="106"/>
        </location>
        <ligand>
            <name>5-phospho-alpha-D-ribose 1-diphosphate</name>
            <dbReference type="ChEBI" id="CHEBI:58017"/>
            <note>ligand shared between dimeric partners</note>
        </ligand>
    </feature>
    <feature type="binding site" evidence="4">
        <location>
            <position position="107"/>
        </location>
        <ligand>
            <name>5-phospho-alpha-D-ribose 1-diphosphate</name>
            <dbReference type="ChEBI" id="CHEBI:58017"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="4">
        <location>
            <position position="110"/>
        </location>
        <ligand>
            <name>5-phospho-alpha-D-ribose 1-diphosphate</name>
            <dbReference type="ChEBI" id="CHEBI:58017"/>
            <note>ligand shared between dimeric partners</note>
        </ligand>
    </feature>
    <feature type="binding site" evidence="4">
        <location>
            <position position="112"/>
        </location>
        <ligand>
            <name>5-phospho-alpha-D-ribose 1-diphosphate</name>
            <dbReference type="ChEBI" id="CHEBI:58017"/>
            <note>ligand shared between dimeric partners</note>
        </ligand>
    </feature>
    <feature type="binding site" evidence="4">
        <location>
            <position position="135"/>
        </location>
        <ligand>
            <name>orotate</name>
            <dbReference type="ChEBI" id="CHEBI:30839"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="4">
        <location>
            <position position="163"/>
        </location>
        <ligand>
            <name>orotate</name>
            <dbReference type="ChEBI" id="CHEBI:30839"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004889"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00011971"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022975"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01208"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="Pfam" id="PF00156"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="ABX32986.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="231" mass="24827" checksum="2941ADC1F81DC85F" modified="2008-01-15" version="1">MSNLQADDTGRLAQEFVQFAVDAGVLRFGEFKTKAGRMSPYFFNAGLFDDGGKMGRLAEFYAKAIAASGIEFDMIFGPAYKGIPLAATVAVELARMGLNKPFAYNRKEAKDHGEGGTLVGAPLKGRVLIVDDVMSAGTAARESIAIIRAAGATPHAVAIALDRQEMATENGQDVPHSAVQYVRNQLGMQVCTIAKLADLLLYLEIQGGSEGSGHHERVLAYRQRYGVNDKE</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="89" xmlns="http://uniprot.org/uniprot">
    <accession>A9BR38</accession>
    <name>A9BR38_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="8">D-3-phosphoglycerate dehydrogenase</fullName>
            <ecNumber evidence="6">1.1.1.399</ecNumber>
            <ecNumber evidence="7">1.1.1.95</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="11">2-oxoglutarate reductase</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="14" type="ordered locus">Daci_0347</name>
    </gene>
    <organism evidence="14 15">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="14 15" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="15">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="15" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="15">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="3">Catalyzes the reversible oxidation of 3-phospho-D-glycerate to 3-phosphonooxypyruvate, the first step of the phosphorylated L-serine biosynthesis pathway. Also catalyzes the reversible oxidation of 2-hydroxyglutarate to 2-oxoglutarate.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="2">
            <text>(2R)-3-phosphoglycerate + NAD(+) = 3-phosphooxypyruvate + H(+) + NADH</text>
            <dbReference type="Rhea" id="RHEA:12641"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:18110"/>
            <dbReference type="ChEBI" id="CHEBI:57540"/>
            <dbReference type="ChEBI" id="CHEBI:57945"/>
            <dbReference type="ChEBI" id="CHEBI:58272"/>
            <dbReference type="EC" id="1.1.1.95"/>
        </reaction>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>(R)-2-hydroxyglutarate + NAD(+) = 2-oxoglutarate + H(+) + NADH</text>
            <dbReference type="Rhea" id="RHEA:49612"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:15801"/>
            <dbReference type="ChEBI" id="CHEBI:16810"/>
            <dbReference type="ChEBI" id="CHEBI:57540"/>
            <dbReference type="ChEBI" id="CHEBI:57945"/>
            <dbReference type="EC" id="1.1.1.399"/>
        </reaction>
    </comment>
    <comment type="pathway">
        <text evidence="4">Amino-acid biosynthesis; L-serine biosynthesis; L-serine from 3-phospho-D-glycerate: step 1/3.</text>
    </comment>
    <comment type="similarity">
        <text evidence="5 12">Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family.</text>
    </comment>
    <dbReference type="EC" id="1.1.1.399" evidence="6"/>
    <dbReference type="EC" id="1.1.1.95" evidence="7"/>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX32993.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012202286.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_0347"/>
    <dbReference type="PRIDE" id="A9BR38"/>
    <dbReference type="EnsemblBacteria" id="ABX32993">
        <property type="protein sequence ID" value="ABX32993"/>
        <property type="gene ID" value="Daci_0347"/>
    </dbReference>
    <dbReference type="GeneID" id="60690752"/>
    <dbReference type="KEGG" id="dac:Daci_0347"/>
    <dbReference type="eggNOG" id="COG0111">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_019796_9_2_4"/>
    <dbReference type="OMA" id="YGNIGTQ"/>
    <dbReference type="UniPathway" id="UPA00135">
        <property type="reaction ID" value="UER00196"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051287">
        <property type="term" value="F:NAD binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004617">
        <property type="term" value="F:phosphoglycerate dehydrogenase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006564">
        <property type="term" value="P:L-serine biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045865">
        <property type="entry name" value="ACT-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002912">
        <property type="entry name" value="ACT_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006139">
        <property type="entry name" value="D-isomer_2_OHA_DH_cat_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029753">
        <property type="entry name" value="D-isomer_DH_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029752">
        <property type="entry name" value="D-isomer_DH_CS1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006140">
        <property type="entry name" value="D-isomer_DH_NAD-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036291">
        <property type="entry name" value="NAD(P)-bd_dom_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00389">
        <property type="entry name" value="2-Hacid_dh"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02826">
        <property type="entry name" value="2-Hacid_dh_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01842">
        <property type="entry name" value="ACT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51735">
        <property type="entry name" value="SSF51735"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55021">
        <property type="entry name" value="SSF55021"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51671">
        <property type="entry name" value="ACT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00065">
        <property type="entry name" value="D_2_HYDROXYACID_DH_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00670">
        <property type="entry name" value="D_2_HYDROXYACID_DH_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00671">
        <property type="entry name" value="D_2_HYDROXYACID_DH_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="10" id="KW-0028">Amino-acid biosynthesis</keyword>
    <keyword evidence="9 12" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="15" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="10" id="KW-0718">Serine biosynthesis</keyword>
    <feature type="domain" description="ACT" evidence="13">
        <location>
            <begin position="340"/>
            <end position="409"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00000646"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00001878"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00003800"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00005216"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00005854"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00013001"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00013143"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00021582"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00023002"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00023299"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="ARBA" id="ARBA00030455"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="12">
        <source>
            <dbReference type="RuleBase" id="RU003719"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="13">
        <source>
            <dbReference type="PROSITE" id="PS51671"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="14">
        <source>
            <dbReference type="EMBL" id="ABX32993.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="15">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="409" mass="43446" checksum="130AE74F9BD104EB" modified="2008-01-15" version="1">MTKTSLDKSKIKFLLLEGIHPSALEVLRNAGYTNVETVTGALEGEELKRKIADVHFVGIRSRTQLTADVFAAAQKLVAVGCFCIGTNQVDLDAARERGVVVFNAPYSNTRSVAELVLAEAILLLRGVPAKNASAHRGGWLKSAENSYEIRGKTLGIVGYGSIGTQLSVMAESVGMQVLFHDVSTKLPLGNARQAASLADLLAGSDIVTLHVPELPSTQWMIGAKEIAAMKPGAILINASRGTVVEIEPLAEALKAGKLLGAAIDVFPTEPRSNKDEFVSPLRGLDNVILTPHVGGSTMEAQANIGLEVAEKLVKYSDNGTTTSAVNFPEVALPAHPGQNRILHVHHNQPGVLSAINQVFAENGINIAGQYLRTDEKVGYVVIDLAAQSSGLAVEKLTQVPGTIRCRVLF</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="64" xmlns="http://uniprot.org/uniprot">
    <accession>A9BRK4</accession>
    <name>A9BRK4_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="7">Sodium/hydrogen exchanger</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ordered locus">Daci_0719</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="8" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX33365.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012202651.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_0719"/>
    <dbReference type="PRIDE" id="A9BRK4"/>
    <dbReference type="EnsemblBacteria" id="ABX33365">
        <property type="protein sequence ID" value="ABX33365"/>
        <property type="gene ID" value="Daci_0719"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_0719"/>
    <dbReference type="eggNOG" id="COG0475">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
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    <dbReference type="OMA" id="FRHNPMV"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
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        <property type="term" value="F:solute:proton antiporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
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        <property type="term" value="P:cation transport"/>
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    </dbReference>
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        <property type="entry name" value="Cation/H_exchanger"/>
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        <property type="entry name" value="Na+/solute_symporter_sf"/>
    </dbReference>
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        <property type="match status" value="1"/>
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    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="20"/>
            <end position="37"/>
        </location>
    </feature>
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        <location>
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            <end position="363"/>
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    </feature>
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        <location>
            <begin position="401"/>
            <end position="420"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
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        </source>
    </evidence>
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        <source>
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    </evidence>
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        <source>
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    </evidence>
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    </evidence>
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        <source>
            <dbReference type="Pfam" id="PF00999"/>
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    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="ABX33365.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
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    </evidence>
    <sequence length="420" mass="43433" checksum="EDA840B75D0A0DD3" modified="2008-01-15" version="1">MNDMLSFWEPWLRPSAGLATVQWSLLLAVATMVGYACQRHAALPKVVGYSLVGGIAGLIGFGANTAWPLQGTGLFLLELGVAIVLFECGGRITLRWFRHNPMVLVQSVAESALTYVLVSLVLGWLGVAPEVAGPLALVAMAASPLVLTRVVADMRAAGAVTDRGLVLATLSTLYALALGSAKAGMLTQPKAGFVASIMPVLVVLGVSVAVALVLAVLMRLALRFMSPASENTSILFLTLISASVPVASYLGGSAPLAALLGGILLKQFNPRPWAWPRQLGTAASLLTMLMFVLVSTVAAQADWSAPVAGVVGAVILARLVAKTLGVAVGNVGTGANWRQAFWVGCAMAPMSSVALLIASQFVAAAPELGAQIAGVALPTILVMEVLGAALATVAIYRSGESSRPWKPLSRTNTAGDERES</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="68" xmlns="http://uniprot.org/uniprot">
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        </submittedName>
    </protein>
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    </gene>
    <organism evidence="3 4">
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            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
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    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
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                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
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            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="4" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX33377.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
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    <dbReference type="STRING" id="398578.Daci_0731"/>
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    <dbReference type="EnsemblBacteria" id="ABX33377">
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        <property type="gene ID" value="Daci_0731"/>
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    <dbReference type="eggNOG" id="COG1638">
        <property type="taxonomic scope" value="Bacteria"/>
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    <dbReference type="HOGENOM" id="CLU_036176_1_3_4"/>
    <dbReference type="OMA" id="NHANIEF"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030288">
        <property type="term" value="C:outer membrane-bounded periplasmic space"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0071702">
        <property type="term" value="P:organic substance transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
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    </dbReference>
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        <property type="entry name" value="DctP_fam"/>
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    </dbReference>
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        <property type="entry name" value="TRAP_DctP_sf"/>
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        <property type="match status" value="1"/>
    </dbReference>
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        <property type="match status" value="1"/>
    </dbReference>
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    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
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        <location>
            <begin position="1"/>
            <end position="24"/>
        </location>
    </feature>
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            <begin position="25"/>
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        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022729"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ABX33377.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="328" mass="35085" checksum="A1606F8232F5E748" modified="2008-01-15" version="1">MQSTLFHRAALAACALLLPALACAQAVKLTLGHGAAPDNPRHLASLKFAELVKTRSAGRIEVQVAPSAQLGDDAAMVTALRTGALDLSANSQGAVAAAVPEYAAYGMPFLFATPARAFQVLDGPLGRELADKSAAKGMVVLGYWDNGIRHMTNSKRPLRSVDDLKGLKMRTPPDAVLVDIIQALGAEAQQIKFAELYVALQQGVVDGQENPLANFHASKLYEVQKHLTLTGHMFQMTPLIMGKRSWDRLPAADRTLLTEAAQEATAYQRQLAREADDRLLDDIRAKGVEVSTIDARAFAQATAKVQDKWLASPAGPYIAKVVKAAGAQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="76" xmlns="http://uniprot.org/uniprot">
    <accession>A9BRV7</accession>
    <name>A9BRV7_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="6">Binding-protein-dependent transport systems inner membrane component</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ordered locus">Daci_1028</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
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        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
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                <person name="Knepper T.P."/>
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            <dbReference type="PubMed" id="15240283"/>
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        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="7" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="4">Cell membrane</location>
            <topology evidence="4">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="4">Belongs to the binding-protein-dependent transport system permease family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX33674.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
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        <property type="nucleotide sequence ID" value="NC_010002.1"/>
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    <dbReference type="STRING" id="398578.Daci_1028"/>
    <dbReference type="PRIDE" id="A9BRV7"/>
    <dbReference type="EnsemblBacteria" id="ABX33674">
        <property type="protein sequence ID" value="ABX33674"/>
        <property type="gene ID" value="Daci_1028"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_1028"/>
    <dbReference type="eggNOG" id="COG0395">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
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    <dbReference type="OMA" id="FFAQKAF"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0055085">
        <property type="term" value="P:transmembrane transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd06261">
        <property type="entry name" value="TM_PBP2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.3720.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000515">
        <property type="entry name" value="MetI-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035906">
        <property type="entry name" value="MetI-like_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00528">
        <property type="entry name" value="BPD_transp_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF161098">
        <property type="entry name" value="SSF161098"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50928">
        <property type="entry name" value="ABC_TM1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3 4" id="KW-0472">Membrane</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1 4" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="2 4" id="KW-1133">Transmembrane helix</keyword>
    <keyword evidence="4" id="KW-0813">Transport</keyword>
    <feature type="transmembrane region" description="Helical" evidence="4">
        <location>
            <begin position="12"/>
            <end position="29"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="4">
        <location>
            <begin position="72"/>
            <end position="93"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="4">
        <location>
            <begin position="105"/>
            <end position="124"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="4">
        <location>
            <begin position="136"/>
            <end position="159"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="4">
        <location>
            <begin position="180"/>
            <end position="206"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="4">
        <location>
            <begin position="237"/>
            <end position="258"/>
        </location>
    </feature>
    <feature type="domain" description="ABC transmembrane type-1" evidence="5">
        <location>
            <begin position="68"/>
            <end position="258"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="RuleBase" id="RU363032"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="PROSITE" id="PS50928"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="ABX33674.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="271" mass="30745" checksum="05DE1CC0EAF3429E" modified="2008-01-15" version="1">MTEDRRFHKRTLFLVAYLLFAVLPIYWMVNMSFKTNEEILSSFSLWPQHFTWANYQAIFTDASWYSGYINSLIYVAINTVISLTVALPAAYAFSRYQFLGDKHVFFWLLTNRMTPPAVFLLPFFQLYTTVGLMDTHIAVALAHLLFNVPLAVWILEGFMSGIPREIDETAYIDGYSFPRFFLTIFLPLIKAGVGVAAFFCFMFSWVELLLARTLTSVNAKPIVATMTRTVSASGMDWATLAAAGVLTIVPGAIVIWFVRHYIAKGFAMGRV</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="82" xmlns="http://uniprot.org/uniprot">
    <accession>A9BS69</accession>
    <name>A9BS69_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">Peptide deformylase</fullName>
            <shortName evidence="2">PDF</shortName>
            <ecNumber evidence="2">3.5.1.88</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="2">Polypeptide deformylase</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="2" type="primary">def</name>
        <name evidence="3" type="ordered locus">Daci_0833</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="4" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="2">Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="2">
            <text>H2O + N-terminal N-formyl-L-methionyl-[peptide] = formate + N-terminal L-methionyl-[peptide]</text>
            <dbReference type="Rhea" id="RHEA:24420"/>
            <dbReference type="Rhea" id="RHEA-COMP:10639"/>
            <dbReference type="Rhea" id="RHEA-COMP:10640"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:15740"/>
            <dbReference type="ChEBI" id="CHEBI:49298"/>
            <dbReference type="ChEBI" id="CHEBI:64731"/>
            <dbReference type="EC" id="3.5.1.88"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="2">
            <name>Fe(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29033"/>
        </cofactor>
        <text evidence="2">Binds 1 Fe(2+) ion.</text>
    </comment>
    <comment type="similarity">
        <text evidence="1 2">Belongs to the polypeptide deformylase family.</text>
    </comment>
    <dbReference type="EC" id="3.5.1.88" evidence="2"/>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX33479.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012202765.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_0833"/>
    <dbReference type="PRIDE" id="A9BS69"/>
    <dbReference type="EnsemblBacteria" id="ABX33479">
        <property type="protein sequence ID" value="ABX33479"/>
        <property type="gene ID" value="Daci_0833"/>
    </dbReference>
    <dbReference type="GeneID" id="60685395"/>
    <dbReference type="KEGG" id="dac:Daci_0833"/>
    <dbReference type="eggNOG" id="COG0242">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_061901_2_1_4"/>
    <dbReference type="OMA" id="VCIQHEI"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0042586">
        <property type="term" value="F:peptide deformylase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006412">
        <property type="term" value="P:translation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd00487">
        <property type="entry name" value="Pep_deformylase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.45.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00163">
        <property type="entry name" value="Pep_deformylase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023635">
        <property type="entry name" value="Peptide_deformylase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036821">
        <property type="entry name" value="Peptide_deformylase_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10458">
        <property type="entry name" value="PTHR10458"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01327">
        <property type="entry name" value="Pep_deformylase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF004749">
        <property type="entry name" value="Pep_def"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR01576">
        <property type="entry name" value="PDEFORMYLASE"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56420">
        <property type="entry name" value="SSF56420"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00079">
        <property type="entry name" value="pept_deformyl"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2 3" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="2" id="KW-0408">Iron</keyword>
    <keyword evidence="2" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="2" id="KW-0648">Protein biosynthesis</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="active site" evidence="2">
        <location>
            <position position="135"/>
        </location>
    </feature>
    <feature type="binding site" evidence="2">
        <location>
            <position position="92"/>
        </location>
        <ligand>
            <name>Fe cation</name>
            <dbReference type="ChEBI" id="CHEBI:24875"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="2">
        <location>
            <position position="134"/>
        </location>
        <ligand>
            <name>Fe cation</name>
            <dbReference type="ChEBI" id="CHEBI:24875"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="2">
        <location>
            <position position="138"/>
        </location>
        <ligand>
            <name>Fe cation</name>
            <dbReference type="ChEBI" id="CHEBI:24875"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00010759"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00163"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ABX33479.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="170" mass="19100" checksum="47F6198CD70D2CA9" modified="2008-01-15" version="1">MSILPILCYPDPRLHTVAKPVAKVDDRIRQLVQDMYATMYDAQGVGLAATQVNVHERVVVVDVSEGRDEPFALINPELLWASEETQLGEEGCLSVPGIYDGVERSTAIKVKALDENGNERIIEAEGFKAICIQHEMDHLMGKVFVEYLSPLKRNRIKTKLLKQQKQAERA</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="57" xmlns="http://uniprot.org/uniprot">
    <accession>A9BSH6</accession>
    <name>A9BSH6_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Putative zinc protease protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_1145</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX33790.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_1145"/>
    <dbReference type="PRIDE" id="A9BSH6"/>
    <dbReference type="EnsemblBacteria" id="ABX33790">
        <property type="protein sequence ID" value="ABX33790"/>
        <property type="gene ID" value="Daci_1145"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_1145"/>
    <dbReference type="eggNOG" id="COG4324">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_064960_0_0_4"/>
    <dbReference type="OMA" id="LYDQWVP"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008233">
        <property type="term" value="F:peptidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006508">
        <property type="term" value="P:proteolysis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014553">
        <property type="entry name" value="Aminopept"/>
    </dbReference>
    <dbReference type="Pfam" id="PF10023">
        <property type="entry name" value="Aminopep"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="2" id="KW-0645">Protease</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="422"/>
            <end position="442"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX33790.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="442" mass="48420" checksum="8E3AB5E971AA57D5" modified="2008-01-15" version="1">MKTMIASVKKSMKAARGPRVREGLSVVRRGLPAILVGIGLLLGGCASRGAGGDGLGYYWQSLRGQMHLLQASRPIDDWLQDESLAPALRERLLSARRMRAFAVERLGLPDNASYRRYADLQRPFAVWNVVAAPPDSLELHRWCFPVAGCVGYRGYFAEADAMAQARQLADQGLESGSYGVPAYSTLGYLNWLGGDPLLNTFIGWGEGEFAGLLFHELAHQVVYVAGDTAFNESFATTVERLGTPLWLATEAGPAARARWDAGQLRRAQWRALTGHTRQALQQLYQDPQQRGPAMAQAKAQIYQQFRSDYAALRAQWRSADAALLTTDAQRQLYDRNQARLDQWVADANNASFGALAAYDDWVPAFTALWKQSQTQAPAQAGGEATQGWQRFYAEVEKLAALPALQRNTRLCGLMPADASLPPACAPDQDRASVSTHGSHPGN</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="55" xmlns="http://uniprot.org/uniprot">
    <accession>A9BSY0</accession>
    <name>A9BSY0_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Helix-turn-helix domain protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_1697</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX34340.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_1697"/>
    <dbReference type="PRIDE" id="A9BSY0"/>
    <dbReference type="EnsemblBacteria" id="ABX34340">
        <property type="protein sequence ID" value="ABX34340"/>
        <property type="gene ID" value="Daci_1697"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_1697"/>
    <dbReference type="eggNOG" id="COG1396">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_123886_0_0_4"/>
    <dbReference type="OMA" id="PKEGWIR"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd00093">
        <property type="entry name" value="HTH_XRE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.260.40">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001387">
        <property type="entry name" value="Cro/C1-type_HTH"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010982">
        <property type="entry name" value="Lambda_DNA-bd_dom_sf"/>
    </dbReference>
    <dbReference type="SMART" id="SM00530">
        <property type="entry name" value="HTH_XRE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47413">
        <property type="entry name" value="SSF47413"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50943">
        <property type="entry name" value="HTH_CROC1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HTH cro/C1-type" evidence="1">
        <location>
            <begin position="36"/>
            <end position="91"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS50943"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX34340.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="146" mass="16505" checksum="8799B380DBAD97F7" modified="2008-01-15" version="1">MLKNRIDLIRLAELDRQFGEFAKMQRSATPRCGWAKTIRLALGMSSGALGRRLAISAQGVRKLEQAEANGTITLNTLARLAEGMDCEVHYVLVPRTRLVEQVLRRANGFSGRREKTPVEVQQLLTESDSFNVLSDLFENLEKRGFW</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="67" xmlns="http://uniprot.org/uniprot">
    <accession>A9BT01</accession>
    <name>A9BT01_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="10">Sulfatase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="10" type="ordered locus">Daci_1718</name>
    </gene>
    <organism evidence="10 11">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="10 11" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="11">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="11" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="11">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="2">Cell inner membrane</location>
            <topology evidence="2">Multi-pass membrane protein</topology>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX34361.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_1718"/>
    <dbReference type="PRIDE" id="A9BT01"/>
    <dbReference type="EnsemblBacteria" id="ABX34361">
        <property type="protein sequence ID" value="ABX34361"/>
        <property type="gene ID" value="Daci_1718"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_1718"/>
    <dbReference type="eggNOG" id="COG2194">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_018534_1_0_4"/>
    <dbReference type="OMA" id="SHGPTYW"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008484">
        <property type="term" value="F:sulfuric ester hydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016772">
        <property type="term" value="F:transferase activity, transferring phosphorus-containing groups"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.720.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017850">
        <property type="entry name" value="Alkaline_phosphatase_core_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012549">
        <property type="entry name" value="EptA-like_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR040423">
        <property type="entry name" value="PEA_transferase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000917">
        <property type="entry name" value="Sulfatase_N"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30443">
        <property type="entry name" value="PTHR30443"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08019">
        <property type="entry name" value="EptA_B_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00884">
        <property type="entry name" value="Sulfatase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53649">
        <property type="entry name" value="SSF53649"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="6 7" id="KW-0472">Membrane</keyword>
    <keyword evidence="11" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4 7" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="5 7" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="36"/>
            <end position="58"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="78"/>
            <end position="99"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="106"/>
            <end position="128"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="148"/>
            <end position="169"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="181"/>
            <end position="203"/>
        </location>
    </feature>
    <feature type="domain" description="EptA_B_N" evidence="9">
        <location>
            <begin position="87"/>
            <end position="235"/>
        </location>
    </feature>
    <feature type="domain" description="Sulfatase" evidence="8">
        <location>
            <begin position="264"/>
            <end position="561"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00004429"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="Pfam" id="PF00884"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="9">
        <source>
            <dbReference type="Pfam" id="PF08019"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="EMBL" id="ABX34361.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="588" mass="65081" checksum="94FD7C00EC155942" modified="2008-01-15" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="31" xmlns="http://uniprot.org/uniprot">
    <accession>A9BT64</accession>
    <name>A9BT64_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Daci_1989</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="2" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX34629.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_1989"/>
    <dbReference type="PRIDE" id="A9BT64"/>
    <dbReference type="EnsemblBacteria" id="ABX34629">
        <property type="protein sequence ID" value="ABX34629"/>
        <property type="gene ID" value="Daci_1989"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_1989"/>
    <dbReference type="HOGENOM" id="CLU_179871_0_0_4"/>
    <dbReference type="OMA" id="PIPLWAV"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ABX34629.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="69" mass="7483" checksum="1720E07A9CE53A61" modified="2008-01-15" version="1">MLRLLPCLLLLAGCAVLLDSLVPIPLWAVAGLTGVMAGYIAHNCQAFVASQRRKSMLRHLARCCLLHAQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="65" xmlns="http://uniprot.org/uniprot">
    <accession>A9BTC9</accession>
    <name>A9BTC9_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="7">Major facilitator superfamily MFS_1</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ordered locus">Daci_2054</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="8" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX34694.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012203977.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_2054"/>
    <dbReference type="PRIDE" id="A9BTC9"/>
    <dbReference type="EnsemblBacteria" id="ABX34694">
        <property type="protein sequence ID" value="ABX34694"/>
        <property type="gene ID" value="Daci_2054"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_2054"/>
    <dbReference type="eggNOG" id="COG2814">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_038484_0_0_4"/>
    <dbReference type="OMA" id="ACIVAAQ"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0022857">
        <property type="term" value="F:transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.1250.20">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011701">
        <property type="entry name" value="MFS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020846">
        <property type="entry name" value="MFS_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036259">
        <property type="entry name" value="MFS_trans_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07690">
        <property type="entry name" value="MFS_1"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF103473">
        <property type="entry name" value="SSF103473"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50850">
        <property type="entry name" value="MFS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4 5" id="KW-0472">Membrane</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 5" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="3 5" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="44"/>
            <end position="66"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="75"/>
            <end position="94"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="100"/>
            <end position="122"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="165"/>
            <end position="184"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="216"/>
            <end position="236"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="248"/>
            <end position="268"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="280"/>
            <end position="299"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="305"/>
            <end position="327"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="339"/>
            <end position="364"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="370"/>
            <end position="390"/>
        </location>
    </feature>
    <feature type="domain" description="MFS" evidence="6">
        <location>
            <begin position="1"/>
            <end position="394"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="PROSITE" id="PS50850"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="ABX34694.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="403" mass="41605" checksum="43746A36335C52F8" modified="2008-01-15" version="1">MHRTHHHARRWLPGLNFFLADVRDGLGPFLGVFLLAQGWRLDDIGYVMALGGIAGMLATTPLGALVDASRRKRRLLAAAIALLLAGNLAIWIAPSLAVTAASQVITGVVAALIAPCLLGITLQITGHADLPRQLGINEAWNHAGNVATAALAGAMGLRWGLPSVFVLMALMGCASLACLALMRLDETPQDTPRPEQAGPCAPGLLHALTGTPALRVLAVAMLLFHLGNAAMLPLLGQAAVARGHANPSGFTALTIIVAQLVMIPMALLAGRHAQRSGYWLLVKAALLSLPLRGLVAATWDSDWALIPVQVLDGVGAGLLGVALPGLVAQTLRGTGHVNAGLGAVMTLQGLGAAASPALAGWIAQRFGFDAAFLSLGGIAVLALALCWFGAPAEHRAARLQPKT</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="91" xmlns="http://uniprot.org/uniprot">
    <accession>A9BTE6</accession>
    <name>A9BTE6_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="2 9">DNA mismatch repair protein MutS</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="9" type="primary">mutS</name>
        <name evidence="13" type="ordered locus">Daci_2274</name>
    </gene>
    <organism evidence="13 14">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="13 14" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="14">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="14" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="14">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="8 9">This protein is involved in the repair of mismatches in DNA. It is possible that it carries out the mismatch recognition step. This protein has a weak ATPase activity.</text>
    </comment>
    <comment type="similarity">
        <text evidence="1 9 10">Belongs to the DNA mismatch repair MutS family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX34914.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_2274"/>
    <dbReference type="PRIDE" id="A9BTE6"/>
    <dbReference type="EnsemblBacteria" id="ABX34914">
        <property type="protein sequence ID" value="ABX34914"/>
        <property type="gene ID" value="Daci_2274"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_2274"/>
    <dbReference type="eggNOG" id="COG0249">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_002472_1_3_4"/>
    <dbReference type="OMA" id="TPMMAQY"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0140664">
        <property type="term" value="F:ATP-dependent DNA damage sensor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003684">
        <property type="term" value="F:damaged DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030983">
        <property type="term" value="F:mismatched DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006298">
        <property type="term" value="P:mismatch repair"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.420.110">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.1170.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00096">
        <property type="entry name" value="MutS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005748">
        <property type="entry name" value="DNA_mismatch_repair_MutS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007695">
        <property type="entry name" value="DNA_mismatch_repair_MutS-lik_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017261">
        <property type="entry name" value="DNA_mismatch_repair_MutS/MSH"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000432">
        <property type="entry name" value="DNA_mismatch_repair_MutS_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007861">
        <property type="entry name" value="DNA_mismatch_repair_MutS_clamp"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007696">
        <property type="entry name" value="DNA_mismatch_repair_MutS_core"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016151">
        <property type="entry name" value="DNA_mismatch_repair_MutS_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036187">
        <property type="entry name" value="DNA_mismatch_repair_MutS_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007860">
        <property type="entry name" value="DNA_mmatch_repair_MutS_con_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036678">
        <property type="entry name" value="MutS_con_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045076">
        <property type="entry name" value="MutS_family"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11361">
        <property type="entry name" value="PTHR11361"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01624">
        <property type="entry name" value="MutS_I"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF05188">
        <property type="entry name" value="MutS_II"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF05192">
        <property type="entry name" value="MutS_III"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF05190">
        <property type="entry name" value="MutS_IV"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00488">
        <property type="entry name" value="MutS_V"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF037677">
        <property type="entry name" value="DNA_mis_repair_Msh6"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00534">
        <property type="entry name" value="MUTSac"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00533">
        <property type="entry name" value="MUTSd"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48334">
        <property type="entry name" value="SSF48334"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53150">
        <property type="entry name" value="SSF53150"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55271">
        <property type="entry name" value="SSF55271"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01070">
        <property type="entry name" value="mutS1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00486">
        <property type="entry name" value="DNA_MISMATCH_REPAIR_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5 9" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="4 9 10" id="KW-0227">DNA damage</keyword>
    <keyword evidence="7 9 10" id="KW-0234">DNA repair</keyword>
    <keyword evidence="6 9 10" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="3 9 10" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="14" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="DNA_MISMATCH_REPAIR_2" evidence="12">
        <location>
            <begin position="745"/>
            <end position="761"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="11">
        <location>
            <begin position="1"/>
            <end position="23"/>
        </location>
    </feature>
    <feature type="binding site" evidence="9">
        <location>
            <begin position="671"/>
            <end position="678"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00006271"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00021982"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022763"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023204"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00024647"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00096"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="RuleBase" id="RU003756"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="12">
        <source>
            <dbReference type="PROSITE" id="PS00486"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="13">
        <source>
            <dbReference type="EMBL" id="ABX34914.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="14">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="911" mass="99599" checksum="D58A21CF0BE51D3F" modified="2008-01-15" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="56" xmlns="http://uniprot.org/uniprot">
    <accession>A9BTL2</accession>
    <name>A9BTL2_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Putative iron-regulated membrane protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_2342</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX34980.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012204262.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_2342"/>
    <dbReference type="PRIDE" id="A9BTL2"/>
    <dbReference type="EnsemblBacteria" id="ABX34980">
        <property type="protein sequence ID" value="ABX34980"/>
        <property type="gene ID" value="Daci_2342"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_2342"/>
    <dbReference type="eggNOG" id="COG3182">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_025664_2_0_4"/>
    <dbReference type="OMA" id="IWGRWIV"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005625">
        <property type="entry name" value="PepSY-ass_TM"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR34219">
        <property type="entry name" value="PTHR34219"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03929">
        <property type="entry name" value="PepSY_TM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="20"/>
            <end position="41"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="149"/>
            <end position="173"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="194"/>
            <end position="218"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="360"/>
            <end position="382"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="403"/>
            <end position="422"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="434"/>
            <end position="453"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="465"/>
            <end position="492"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="498"/>
            <end position="520"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX34980.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="550" mass="60011" checksum="9F29038CB11591AD" modified="2008-01-15" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="62" xmlns="http://uniprot.org/uniprot">
    <accession>A9BTN9</accession>
    <name>A9BTN9_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Glycosyl transferase family 3</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ordered locus">Daci_2369</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="5" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX35007.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_2369"/>
    <dbReference type="PRIDE" id="A9BTN9"/>
    <dbReference type="EnsemblBacteria" id="ABX35007">
        <property type="protein sequence ID" value="ABX35007"/>
        <property type="gene ID" value="Daci_2369"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_2369"/>
    <dbReference type="eggNOG" id="COG0547">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_068658_0_0_4"/>
    <dbReference type="OMA" id="AMRIKGE"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004048">
        <property type="term" value="F:anthranilate phosphoribosyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000162">
        <property type="term" value="P:tryptophan biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.1030.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005940">
        <property type="entry name" value="Anthranilate_Pribosyl_Tfrase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017459">
        <property type="entry name" value="Glycosyl_Trfase_fam3_N_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036320">
        <property type="entry name" value="Glycosyl_Trfase_fam3_N_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035902">
        <property type="entry name" value="Nuc_phospho_transferase"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43285">
        <property type="entry name" value="PTHR43285"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02885">
        <property type="entry name" value="Glycos_trans_3N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47648">
        <property type="entry name" value="SSF47648"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52418">
        <property type="entry name" value="SSF52418"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0328">Glycosyltransferase</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 4" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Glycos_trans_3N" evidence="3">
        <location>
            <begin position="17"/>
            <end position="78"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022676"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF02885"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="ABX35007.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="316" mass="33749" checksum="F35FF712595D8B91" modified="2008-01-15" version="1">MPPQDSTHDCNAMGISQYIKEIGRGARGAKALDRPQAADLFGQVLDGGVSDLEIGAFCIAMRIKGETVEEMSGFLDAVHARVARFPASADGRPVIVLPSYNGARRLPVLTPLLALLLAREGLPVLLHGMRTEARRILASDVLQALGIAPLPSPQALAGGQVAHIHTEHLHLALARLLSVREVIGLRNPGHSVVKLLAPCDGPCLLVTAYTHPEYLPMLHGTFGTLGMNVLLSRGLEGEVAADPRRLPRYDGFVAGAHQLLAEQQSGTASDVPGLPAEIDMDTTARYTEDVLAGRLPVPPALTRQVEHIVHLADQIR</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="46" xmlns="http://uniprot.org/uniprot">
    <accession>A9BU79</accession>
    <name>A9BU79_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Daci_3156</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="2" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX35794.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="PRIDE" id="A9BU79"/>
    <dbReference type="EnsemblBacteria" id="ABX35794">
        <property type="protein sequence ID" value="ABX35794"/>
        <property type="gene ID" value="Daci_3156"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_3156"/>
    <dbReference type="eggNOG" id="ENOG502ZAAN">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_620643_0_0_4"/>
    <dbReference type="OMA" id="DYSWLEA"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029470">
        <property type="entry name" value="PDDEXK_4"/>
    </dbReference>
    <dbReference type="Pfam" id="PF14281">
        <property type="entry name" value="PDDEXK_4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ABX35794.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="445" mass="50448" checksum="4B43B0833A4FAF80" modified="2008-01-15" version="1">MNNDDLYSFFSDPELIELIEQAKISDDILDVITLNENQHSDMLAWCLTPGEGHGQGDSVIKDFLEAAYQKSDAAIYDNKKFFRKWTPGRIRVSSFGSAFVTREFVVSVKEPGQEEKRTGRLDLFIVDPQNKLLIAIENKVGARLTEEQLARYQGAINKEIGSRPIFKDYEFAYVVLDRELDWYTDDKLNALGKRWALLDYSWLEASARRARLQVTRNNQAAQLLVAYCQKQTSWESSSEARLSELAGEIASKHPQVIAALSALRGQSIAQWTPKTLEGLSGELALFRAQHLRLCMLLTRSQGIASLQRKIRKALPLSDMVNGRTWLEFATPDIAELTIDDESSWALSVNIRRQPNNDDNKPRYTLRAMWRRASFDDAHGNETDLRRHFEAVLPGLKHFSSATERRMVIAQSLDADAVLQRAVKLAQQLSASLLNLSMATPMRKIS</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="73" xmlns="http://uniprot.org/uniprot">
    <accession>A9BUX0</accession>
    <name>A9BUX0_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Short-chain dehydrogenase/reductase SDR</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Daci_1790</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="2" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX34432.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012203717.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="SMR" id="A9BUX0"/>
    <dbReference type="STRING" id="398578.Daci_1790"/>
    <dbReference type="PRIDE" id="A9BUX0"/>
    <dbReference type="EnsemblBacteria" id="ABX34432">
        <property type="protein sequence ID" value="ABX34432"/>
        <property type="gene ID" value="Daci_1790"/>
    </dbReference>
    <dbReference type="GeneID" id="60686216"/>
    <dbReference type="KEGG" id="dac:Daci_1790"/>
    <dbReference type="eggNOG" id="COG1028">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_010194_1_0_4"/>
    <dbReference type="OMA" id="NAAHAHR"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016491">
        <property type="term" value="F:oxidoreductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036291">
        <property type="entry name" value="NAD(P)-bd_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020904">
        <property type="entry name" value="Sc_DH/Rdtase_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002347">
        <property type="entry name" value="SDR_fam"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00081">
        <property type="entry name" value="GDHRDH"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00080">
        <property type="entry name" value="SDRFAMILY"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51735">
        <property type="entry name" value="SSF51735"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00061">
        <property type="entry name" value="ADH_SHORT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ABX34432.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="263" mass="27158" checksum="DE00120922CA2BB2" modified="2008-01-15" version="1">MFKGLEGKSAIVTGGSTLIGAGVVRALHAAGVKVVIADIDADNGQVLADALGEGALFVRTDITDDAQVAACVQQACSRHGGVHILVNLACSYVDEGLQSPRADWLASFNVNVASAVAMLQAVHPHMVAAGGGAVVNFTSISSEAAQTGRWLYPASKAAMKQLTRSMAMDLAADGIRVNSVCPGWTWSAVMDRLSGGDRAKTDRVAAPFHLLGRVGDPHEVAQVVLFLCSDHASFVTGADYAVDGGYGAMGPERAVAAIPQLMD</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="54" xmlns="http://uniprot.org/uniprot">
    <accession>A9BVH7</accession>
    <name>A9BVH7_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Daci_2406</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="4" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Periplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the UPF0065 (bug) family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX35044.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012204326.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_2406"/>
    <dbReference type="PRIDE" id="A9BVH7"/>
    <dbReference type="EnsemblBacteria" id="ABX35044">
        <property type="protein sequence ID" value="ABX35044"/>
        <property type="gene ID" value="Daci_2406"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_2406"/>
    <dbReference type="eggNOG" id="COG3181">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_045683_0_0_4"/>
    <dbReference type="OMA" id="MAHVNSH"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0042597">
        <property type="term" value="C:periplasmic space"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.190.150">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005064">
        <property type="entry name" value="BUG"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR042100">
        <property type="entry name" value="Bug_dom1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR42928">
        <property type="entry name" value="PTHR42928"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03401">
        <property type="entry name" value="TctC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF017082">
        <property type="entry name" value="YflP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004418"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00006987"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ABX35044.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="324" mass="33717" checksum="01281F3751E57E27" modified="2008-01-15" version="1">MQRRQFLTSAAAATALHAHPGFAQARPPAGPVKILVGFSAGGGTDILARIIANRLNQLWAIPVIVENRPGAAGLIAAAEAARAAPDGQTLMMGHINALGIAPALNPRLGFSPERDFSAIALVGQTPQVLVASPKASATMQGLLAALKQKPGEVSFGSSGTGSAQHLALALFEQTAAVSALHIPYKGASNVMTDLLGGQIDYAFEGMTTAAPFIKGGKVHAVAQTGVKRAKAFAEIPTVAEQGYTGFNASIWFGLVGPARMPADLVARINADVNRILAMPDVVAKLEEFGAEDGGGTPQRFDAFMRDERAKWARLIQARGIRVEG</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="83" xmlns="http://uniprot.org/uniprot">
    <accession>A9BVL3</accession>
    <name>A9BVL3_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Transcriptional regulator, LysR family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Daci_2442</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="4" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the LysR transcriptional regulatory family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX35080.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012204362.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_2442"/>
    <dbReference type="PRIDE" id="A9BVL3"/>
    <dbReference type="EnsemblBacteria" id="ABX35080">
        <property type="protein sequence ID" value="ABX35080"/>
        <property type="gene ID" value="Daci_2442"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_2442"/>
    <dbReference type="eggNOG" id="COG0583">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_039613_6_4_4"/>
    <dbReference type="OMA" id="ADIGFMR"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003700">
        <property type="term" value="F:DNA-binding transcription factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005119">
        <property type="entry name" value="LysR_subst-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000847">
        <property type="entry name" value="Tscrpt_reg_HTH_LysR"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036390">
        <property type="entry name" value="WH_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00126">
        <property type="entry name" value="HTH_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03466">
        <property type="entry name" value="LysR_substrate"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00039">
        <property type="entry name" value="HTHLYSR"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46785">
        <property type="entry name" value="SSF46785"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50931">
        <property type="entry name" value="HTH_LYSR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HTH lysR-type" evidence="2">
        <location>
            <begin position="1"/>
            <end position="58"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00009437"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS50931"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ABX35080.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="299" mass="33691" checksum="D6C534A911349417" modified="2008-01-15" version="1">MELRQLRYFLVLAEELHFSRAAQRLSISQPPLSVAIRQLEEELGAQLFERTSKEVRLTAAGKHLRVQAQDIMEQAQRVRQDMRAIADGVQGRIRLGFVGSAIYRGLPEALESFRARHPLVRIDMLELNSAEQIAGLQQERLDLGLLHATRPAPGLQSHTLVSEPFMACLPAGHALAGQRTLQVRQLAGERMVLFSRQVSPDYHQQIWQICQSEGFTPDLHHEVRHWLSVLSMVSLDQGVSLVPSCLQRVGFPGLAFVPIQGRHPQSQMQAMWHPGHVQPLVESLLAHLRDSVRRLGQQP</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="56" xmlns="http://uniprot.org/uniprot">
    <accession>A9BVM9</accession>
    <name>A9BVM9_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="5">Probable membrane transporter protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="6" type="ordered locus">Daci_2458</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="7" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="5">Cell membrane</location>
            <topology evidence="5">Multi-pass membrane protein</topology>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="5">Belongs to the 4-toluene sulfonate uptake permease (TSUP) (TC 2.A.102) family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX35096.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012204377.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_2458"/>
    <dbReference type="PRIDE" id="A9BVM9"/>
    <dbReference type="EnsemblBacteria" id="ABX35096">
        <property type="protein sequence ID" value="ABX35096"/>
        <property type="gene ID" value="Daci_2458"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_2458"/>
    <dbReference type="eggNOG" id="COG0730">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_054750_7_1_4"/>
    <dbReference type="OMA" id="RRCFFVG"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002781">
        <property type="entry name" value="TM_pro_TauE-like"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01925">
        <property type="entry name" value="TauE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="4 5" id="KW-0472">Membrane</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 5" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="3 5" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="33"/>
            <end position="55"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="75"/>
            <end position="94"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="100"/>
            <end position="119"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="131"/>
            <end position="157"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="169"/>
            <end position="191"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="203"/>
            <end position="224"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="236"/>
            <end position="254"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="RuleBase" id="RU363041"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="ABX35096.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="256" mass="26629" checksum="BC55354DA1D69CCF" modified="2008-01-15" version="1">MWDAWWVLAAAVAVFGLAGVVKGVVGLGLPTVSMALLALFMPAGQAAAWLLLPSLVTNVVQMRPMPSLRPLLRRLGWMQLGIVAGTVGGMLWWGPVGEAAVARTALGVALVIYALWGLWGPGLQLPQRHQAWLGLLCGLLTGGITALTGVFVVPAVAFLQSLALGRQALMQAMGLCFTVSTLALGAGMALAQGPGHAASSWTGWGATALVSALMLLPALAGMAWGERLRQSLSPQVFKRVLMLGLLALGIYMCARG</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="89" xmlns="http://uniprot.org/uniprot">
    <accession>A9BVQ7</accession>
    <name>A9BVQ7_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Transcriptional regulator, Crp/Fnr family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ordered locus">Daci_2782</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="5" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX35420.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_2782"/>
    <dbReference type="PRIDE" id="A9BVQ7"/>
    <dbReference type="EnsemblBacteria" id="ABX35420">
        <property type="protein sequence ID" value="ABX35420"/>
        <property type="gene ID" value="Daci_2782"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_2782"/>
    <dbReference type="eggNOG" id="COG0664">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_075053_0_2_4"/>
    <dbReference type="OMA" id="AEVCVMP"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006355">
        <property type="term" value="P:regulation of transcription, DNA-templated"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd00038">
        <property type="entry name" value="CAP_ED"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.120.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018490">
        <property type="entry name" value="cNMP-bd-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000595">
        <property type="entry name" value="cNMP-bd_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012318">
        <property type="entry name" value="HTH_CRP"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014710">
        <property type="entry name" value="RmlC-like_jellyroll"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036390">
        <property type="entry name" value="WH_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00027">
        <property type="entry name" value="cNMP_binding"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13545">
        <property type="entry name" value="HTH_Crp_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00034">
        <property type="entry name" value="HTHCRP"/>
    </dbReference>
    <dbReference type="SMART" id="SM00100">
        <property type="entry name" value="cNMP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00419">
        <property type="entry name" value="HTH_CRP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46785">
        <property type="entry name" value="SSF46785"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51206">
        <property type="entry name" value="SSF51206"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50042">
        <property type="entry name" value="CNMP_BINDING_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51063">
        <property type="entry name" value="HTH_CRP_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Cyclic nucleotide-binding" evidence="2">
        <location>
            <begin position="43"/>
            <end position="120"/>
        </location>
    </feature>
    <feature type="domain" description="HTH crp-type" evidence="3">
        <location>
            <begin position="177"/>
            <end position="250"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS50042"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="PROSITE" id="PS51063"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="ABX35420.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="262" mass="29511" checksum="83140E0D56A4CABC" modified="2008-01-15" version="1">MIQLIAIHEVTAGTLCAADVYHSMNLQTIKASCSNCNLRELCMPMGLDAEQMQRIDDIVATRRKVKRGGLLFRNGETFTSLYAIRTGFFKTCVATEDGRDQVTGFQMAGEIIGLDGIVNDHHTCDAVALEDAEVCVMPFDKLEDLSREVTALQNHVHKVMSREIVREHGVMLLLGSMRAEERLAAFVLNLVQRLHARGFSKSELVLRMTREEIGSYLGLKLETVSRTFSKFADDNIIEVRQRHLRILDTDALKRIVNSQQCQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="61" xmlns="http://uniprot.org/uniprot">
    <accession>A9BVT4</accession>
    <name>A9BVT4_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Hydroxypyruvate isomerase</fullName>
            <ecNumber evidence="4">5.3.1.22</ecNumber>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ordered locus">Daci_2809</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="5" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the hyi family.</text>
    </comment>
    <dbReference type="EC" id="5.3.1.22" evidence="4"/>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX35447.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012204657.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_2809"/>
    <dbReference type="PRIDE" id="A9BVT4"/>
    <dbReference type="EnsemblBacteria" id="ABX35447">
        <property type="protein sequence ID" value="ABX35447"/>
        <property type="gene ID" value="Daci_2809"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_2809"/>
    <dbReference type="eggNOG" id="COG3622">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_050006_1_1_4"/>
    <dbReference type="OMA" id="CEYRPRA"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008903">
        <property type="term" value="F:hydroxypyruvate isomerase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR026040">
        <property type="entry name" value="HyI-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036237">
        <property type="entry name" value="Xyl_isomerase-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013022">
        <property type="entry name" value="Xyl_isomerase-like_TIM-brl"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01261">
        <property type="entry name" value="AP_endonuc_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF006241">
        <property type="entry name" value="HyI"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51658">
        <property type="entry name" value="SSF51658"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="1 4" id="KW-0413">Isomerase</keyword>
    <keyword evidence="4" id="KW-0670">Pyruvate</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="AP_endonuc_2" evidence="3">
        <location>
            <begin position="21"/>
            <end position="263"/>
        </location>
    </feature>
    <feature type="active site" description="Proton donor/acceptor" evidence="2">
        <location>
            <position position="143"/>
        </location>
    </feature>
    <feature type="active site" description="Proton donor/acceptor" evidence="2">
        <location>
            <position position="242"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="PIRNR" id="PIRNR006241"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="PIRSR" id="PIRSR006241-50"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF01261"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="ABX35447.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="265" mass="29354" checksum="D1FC987A40BB187D" modified="2008-01-15" version="1">MPRFAANLSMLYNDLDFLDRFEAAARDGFQAVEYLFPYDFAPGQLARRLQDHGLQQVLFNAPPGDWNAGERGLACIPGREAEFAQGMERAVAYAQALGCPRIHVMAGLKPAGASDDILRATYIANVRHAARLAAPHGIAILLEPINGRDMPGFFLSRQDQAHALLADIAEPNVQVQMDLYHCQIVEGDLAMKIRQYLPTGRVGHVQIAGVPERHEPDVGEVNYPYLFRLLDQLGYDGWIGCEYRPARGAAAHATSEGLGWMKEWL</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="57" xmlns="http://uniprot.org/uniprot">
    <accession>A9BVV3</accession>
    <name>A9BVV3_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ordered locus">Daci_2828</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="5" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Periplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the UPF0065 (bug) family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX35466.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012204676.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_2828"/>
    <dbReference type="PRIDE" id="A9BVV3"/>
    <dbReference type="EnsemblBacteria" id="ABX35466">
        <property type="protein sequence ID" value="ABX35466"/>
        <property type="gene ID" value="Daci_2828"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_2828"/>
    <dbReference type="eggNOG" id="COG3181">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_045683_0_0_4"/>
    <dbReference type="OMA" id="VHVPFNG"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0042597">
        <property type="term" value="C:periplasmic space"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.190.150">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005064">
        <property type="entry name" value="BUG"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR042100">
        <property type="entry name" value="Bug_dom1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006311">
        <property type="entry name" value="TAT_signal"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR42928">
        <property type="entry name" value="PTHR42928"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03401">
        <property type="entry name" value="TctC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF017082">
        <property type="entry name" value="YflP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51318">
        <property type="entry name" value="TAT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="3">
        <location>
            <begin position="1"/>
            <end position="26"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5002735872" evidence="3">
        <location>
            <begin position="27"/>
            <end position="328"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004418"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00006987"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="ABX35466.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="328" mass="34056" checksum="5F40005A36AB9E74" modified="2008-01-15" version="1">MALSRSRFLSCLMAGATALALPAAKAQPQSYPDRPIKLVVPFAPGGATDILGRLLATSLGERLGQPVVVENRPGAGTVVAGALVAKAPPDGYTLLLGASTTLTLNPAIRNPLPYDPLRSFTPLGLVADMGLVLVAHNETPARTLPELVALAKADPDNLSYGSFGTGSSVHFGGEMLKTATGMRMVHVPFNGSSPSLTALMGGQVQVAVDTVVATTPLIKAGKIRPIAALGPQRLALLPQVPTVAESGYPGFAMDTWFAFLAPAGLPAPIQKKLEKALADAMAEPAMKKKLVDIGLSPAWGPASALQERIERELPQMRAVAARADIKVD</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="52" xmlns="http://uniprot.org/uniprot">
    <accession>A9BVW7</accession>
    <name>A9BVW7_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Daci_2842</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="2" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX35480.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_2842"/>
    <dbReference type="PRIDE" id="A9BVW7"/>
    <dbReference type="EnsemblBacteria" id="ABX35480">
        <property type="protein sequence ID" value="ABX35480"/>
        <property type="gene ID" value="Daci_2842"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_2842"/>
    <dbReference type="eggNOG" id="COG3530">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_176025_1_0_4"/>
    <dbReference type="OMA" id="MPFGKYE"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR024530">
        <property type="entry name" value="QSregVF_b"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR40613">
        <property type="entry name" value="PTHR40613"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12843">
        <property type="entry name" value="QSregVF_b"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ABX35480.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="96" mass="10696" checksum="2CF2AC83D1AA56A4" modified="2008-01-15" version="1">MLFGYKAVAFYADSCDAAARTIAAMDSEMLQKLVLVHMPYGKYKGRLIADLPGNYLNWFAREGFPKGELGQLLALMQELDHNGLSHLLQPLRAGPR</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="54" xmlns="http://uniprot.org/uniprot">
    <accession>A9BVZ1</accession>
    <name>A9BVZ1_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Polyhydroxyalkonate synthesis repressor, PhaR</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Daci_2866</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="4" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX35504.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012204714.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_2866"/>
    <dbReference type="PRIDE" id="A9BVZ1"/>
    <dbReference type="EnsemblBacteria" id="ABX35504">
        <property type="protein sequence ID" value="ABX35504"/>
        <property type="gene ID" value="Daci_2866"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_2866"/>
    <dbReference type="eggNOG" id="COG5394">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_089210_1_0_4"/>
    <dbReference type="OMA" id="MQGMMGS"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006355">
        <property type="term" value="P:regulation of transcription, DNA-templated"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012909">
        <property type="entry name" value="PHA_DNA-bd_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010134">
        <property type="entry name" value="PHA_reg_PhaR"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007897">
        <property type="entry name" value="PHB_accumulat"/>
    </dbReference>
    <dbReference type="Pfam" id="PF05233">
        <property type="entry name" value="PHB_acc"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07879">
        <property type="entry name" value="PHB_acc_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01848">
        <property type="entry name" value="PHA_reg_PhaR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="PHB_acc_N" evidence="2">
        <location>
            <begin position="15"/>
            <end position="74"/>
        </location>
    </feature>
    <feature type="domain" description="PHB_acc" evidence="1">
        <location>
            <begin position="79"/>
            <end position="117"/>
        </location>
    </feature>
    <feature type="domain" description="PHB_acc" evidence="1">
        <location>
            <begin position="125"/>
            <end position="163"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF05233"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF07879"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ABX35504.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="179" mass="20350" checksum="E5E753FEDB997708" modified="2008-01-15" version="1">MQETTTSAAPSAQRVIKKYPNRRLYDTNTSSYITLTEVKQLVMSNEPVVVKDAKSGEDLTRSILLQIILEEEAGGAPMFSETVLANIIRFYGHAMQGYMGSYLEKNVQMFTDFQNKLAEQAQGTSPEAWSQFMRMQPPAMQNMMSSYMEQSQNMFTQMQDQMQKQTEQMLGALGIKRNS</sequence>
</entry>
<entry dataset="Swiss-Prot" created="2009-01-20" modified="2022-08-03" version="73" xmlns="http://uniprot.org/uniprot">
    <accession>A9BVZ7</accession>
    <name>MTND_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Acireductone dioxygenase</fullName>
        </recommendedName>
        <alternativeName>
            <fullName evidence="1">1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase</fullName>
            <shortName evidence="1">DHK-MTPene dioxygenase</shortName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="1">Acireductone dioxygenase (Fe(2+)-requiring)</fullName>
            <shortName evidence="1">ARD'</shortName>
            <shortName evidence="1">Fe-ARD</shortName>
            <ecNumber evidence="1">1.13.11.54</ecNumber>
        </alternativeName>
        <alternativeName>
            <fullName evidence="1">Acireductone dioxygenase (Ni(2+)-requiring)</fullName>
            <shortName evidence="1">ARD</shortName>
            <shortName evidence="1">Ni-ARD</shortName>
            <ecNumber evidence="1">1.13.11.53</ecNumber>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="1" type="primary">mtnD</name>
        <name type="ordered locus">Daci_3175</name>
    </gene>
    <organism>
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference key="1">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain>DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="1">Catalyzes 2 different reactions between oxygen and the acireductone 1,2-dihydroxy-3-keto-5-methylthiopentene (DHK-MTPene) depending upon the metal bound in the active site. Fe-containing acireductone dioxygenase (Fe-ARD) produces formate and 2-keto-4-methylthiobutyrate (KMTB), the alpha-ketoacid precursor of methionine in the methionine recycle pathway. Ni-containing acireductone dioxygenase (Ni-ARD) produces methylthiopropionate, carbon monoxide and formate, and does not lie on the methionine recycle pathway.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>1,2-dihydroxy-5-(methylsulfanyl)pent-1-en-3-one + O2 = 3-(methylsulfanyl)propanoate + CO + formate + 2 H(+)</text>
            <dbReference type="Rhea" id="RHEA:14161"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:15379"/>
            <dbReference type="ChEBI" id="CHEBI:15740"/>
            <dbReference type="ChEBI" id="CHEBI:17245"/>
            <dbReference type="ChEBI" id="CHEBI:49016"/>
            <dbReference type="ChEBI" id="CHEBI:49252"/>
            <dbReference type="EC" id="1.13.11.53"/>
        </reaction>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>1,2-dihydroxy-5-(methylsulfanyl)pent-1-en-3-one + O2 = 4-methylsulfanyl-2-oxobutanoate + formate + 2 H(+)</text>
            <dbReference type="Rhea" id="RHEA:24504"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:15379"/>
            <dbReference type="ChEBI" id="CHEBI:15740"/>
            <dbReference type="ChEBI" id="CHEBI:16723"/>
            <dbReference type="ChEBI" id="CHEBI:49252"/>
            <dbReference type="EC" id="1.13.11.54"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>Fe(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29033"/>
        </cofactor>
        <text evidence="1">Binds 1 Fe(2+) cation per monomer.</text>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>Ni(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:49786"/>
        </cofactor>
        <text evidence="1">Binds 1 nickel ion per monomer.</text>
    </comment>
    <comment type="pathway">
        <text evidence="1">Amino-acid biosynthesis; L-methionine biosynthesis via salvage pathway; L-methionine from S-methyl-5-thio-alpha-D-ribose 1-phosphate: step 5/6.</text>
    </comment>
    <comment type="subunit">
        <text evidence="1">Monomer.</text>
    </comment>
    <comment type="similarity">
        <text evidence="1">Belongs to the acireductone dioxygenase (ARD) family.</text>
    </comment>
    <dbReference type="EC" id="1.13.11.54" evidence="1"/>
    <dbReference type="EC" id="1.13.11.53" evidence="1"/>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX35813.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012205013.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A9BVZ7"/>
    <dbReference type="SMR" id="A9BVZ7"/>
    <dbReference type="STRING" id="398578.Daci_3175"/>
    <dbReference type="PRIDE" id="A9BVZ7"/>
    <dbReference type="EnsemblBacteria" id="ABX35813">
        <property type="protein sequence ID" value="ABX35813"/>
        <property type="gene ID" value="Daci_3175"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_3175"/>
    <dbReference type="eggNOG" id="COG1791">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_125400_0_0_4"/>
    <dbReference type="OMA" id="ENWHRHA"/>
    <dbReference type="UniPathway" id="UPA00904">
        <property type="reaction ID" value="UER00878"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0010308">
        <property type="term" value="F:acireductone dioxygenase (Ni2+-requiring) activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0010309">
        <property type="term" value="F:acireductone dioxygenase [iron(II)-requiring] activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005506">
        <property type="term" value="F:iron ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016151">
        <property type="term" value="F:nickel cation binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0019509">
        <property type="term" value="P:L-methionine salvage from methylthioadenosine"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniPathway"/>
    </dbReference>
    <dbReference type="GO" id="GO:0019284">
        <property type="term" value="P:L-methionine salvage from S-adenosylmethionine"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd02232">
        <property type="entry name" value="cupin_ARD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.120.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01682">
        <property type="entry name" value="Salvage_MtnD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004313">
        <property type="entry name" value="ARD"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023956">
        <property type="entry name" value="ARD_bac"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014710">
        <property type="entry name" value="RmlC-like_jellyroll"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011051">
        <property type="entry name" value="RmlC_Cupin_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR23418">
        <property type="entry name" value="PTHR23418"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03079">
        <property type="entry name" value="ARD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51182">
        <property type="entry name" value="SSF51182"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword id="KW-0028">Amino-acid biosynthesis</keyword>
    <keyword id="KW-0223">Dioxygenase</keyword>
    <keyword id="KW-0408">Iron</keyword>
    <keyword id="KW-0479">Metal-binding</keyword>
    <keyword id="KW-0486">Methionine biosynthesis</keyword>
    <keyword id="KW-0533">Nickel</keyword>
    <keyword id="KW-0560">Oxidoreductase</keyword>
    <keyword id="KW-1185">Reference proteome</keyword>
    <feature type="chain" id="PRO_0000359184" description="Acireductone dioxygenase">
        <location>
            <begin position="1"/>
            <end position="176"/>
        </location>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <position position="93"/>
        </location>
        <ligand>
            <name>Fe(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29033"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <position position="93"/>
        </location>
        <ligand>
            <name>Ni(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:49786"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <position position="95"/>
        </location>
        <ligand>
            <name>Fe(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29033"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <position position="95"/>
        </location>
        <ligand>
            <name>Ni(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:49786"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <position position="99"/>
        </location>
        <ligand>
            <name>Fe(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29033"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <position position="99"/>
        </location>
        <ligand>
            <name>Ni(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:49786"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <position position="138"/>
        </location>
        <ligand>
            <name>Fe(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29033"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <position position="138"/>
        </location>
        <ligand>
            <name>Ni(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:49786"/>
        </ligand>
    </feature>
    <feature type="site" description="May play a role in transmitting local conformational changes" evidence="1">
        <location>
            <position position="98"/>
        </location>
    </feature>
    <feature type="site" description="Important to generate the dianion" evidence="1">
        <location>
            <position position="101"/>
        </location>
    </feature>
    <evidence type="ECO:0000255" key="1">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01682"/>
        </source>
    </evidence>
    <sequence length="176" mass="19032" checksum="7A596DC242018DE1" modified="2008-01-15" version="1">MGALASHRVSDADFVAAIGVQWQHRPLAPEPGLAALLAQAQLDDGGKATVVQAVGMLVVDECVAHGYHSMDLVVLHPGTPGLDEALERFDKPHTHADDEVRYILEGEGLFGFFDAGGQERVLRVQPGDYLRIPAGVEHRFTLTATRRIKALRLFADTAGWVAQYTQRPAAAMEVPA</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="53" xmlns="http://uniprot.org/uniprot">
    <accession>A9BVZ8</accession>
    <name>A9BVZ8_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Daci_3176</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="2" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX35814.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012205014.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_3176"/>
    <dbReference type="PRIDE" id="A9BVZ8"/>
    <dbReference type="EnsemblBacteria" id="ABX35814">
        <property type="protein sequence ID" value="ABX35814"/>
        <property type="gene ID" value="Daci_3176"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_3176"/>
    <dbReference type="eggNOG" id="ENOG502Z8XV">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_035098_0_0_4"/>
    <dbReference type="OMA" id="EAWVSWG"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011990">
        <property type="entry name" value="TPR-like_helical_dom_sf"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48452">
        <property type="entry name" value="SSF48452"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ABX35814.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="366" mass="40649" checksum="940E831E65BC38EE" modified="2008-01-15" version="1">MSLPVPTLFQTLDEALFTRAQDLLDEEWLAKDADLAPVLPVVLARGVGQDWHKAGTFRHHLAGVARSLALWRQPRDVRLLGLLHSVYGNAFVDLVKFDAGSERGRLRELVGEGAEHLVYLFCTMSRTQFMQKILAGDLAEDGSMALESAGRSQRLSAYEVAAFTIVSMADAMEQWFSWQEDIYSQFPQVQNQRQQGVHWAASLWPGPMRPASRMLSQISDLGRSLQHPALRAQLPLPPVFDHCSRQLSPGDEAAAVSLYWSVIQLDQPLVDLDAATAVLESAVRLNPWVGEPQMVLAQLYLSAGRADGAARAAASALQCFSGWGNAWDKRVQWDAWIAWTRILLQSAQQGSWPERLDKLNNLALKG</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="60" xmlns="http://uniprot.org/uniprot">
    <accession>A9BW26</accession>
    <name>A9BW26_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Daci_3204</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="2" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX35842.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_3204"/>
    <dbReference type="PRIDE" id="A9BW26"/>
    <dbReference type="EnsemblBacteria" id="ABX35842">
        <property type="protein sequence ID" value="ABX35842"/>
        <property type="gene ID" value="Daci_3204"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_3204"/>
    <dbReference type="eggNOG" id="ENOG5030W55">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_063200_0_0_4"/>
    <dbReference type="OMA" id="MQGYMWL"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.320.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011604">
        <property type="entry name" value="PDDEXK-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011335">
        <property type="entry name" value="Restrct_endonuc-II-like"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52980">
        <property type="entry name" value="SSF52980"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ABX35842.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="259" mass="29785" checksum="43EB265BD78EC326" modified="2008-01-15" version="1">MREVLFRCSSIGKLMGAPVSIDPALVTPDVQKILDSKKRTDEEKARIEGLKLRTLSEGAKTYVRELVRQEIWGVDFESSSKYTEKGLAVEGQALELINRVRGLSLTKNTERRSDDLLTGEADTIDLLNQEGWDVKSSWSLQTFPAFLQDCADSLYAYQMRGYMRLWGVDRWHVGYAMVDTPDELLGRYEPLPLHIVSHIPEHMRLTVWTIERDMEIERQMVIKLQAARTYYQQCIEEFSALHPDPKEEACQSHLSCAMQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2021-06-02" version="37" xmlns="http://uniprot.org/uniprot">
    <accession>A9BW47</accession>
    <name>A9BW47_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Daci_3225</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="2" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX35863.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012205063.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_3225"/>
    <dbReference type="EnsemblBacteria" id="ABX35863">
        <property type="protein sequence ID" value="ABX35863"/>
        <property type="gene ID" value="Daci_3225"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_3225"/>
    <dbReference type="eggNOG" id="ENOG5033BW7">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_190544_0_0_4"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR021739">
        <property type="entry name" value="SaV-like"/>
    </dbReference>
    <dbReference type="Pfam" id="PF11753">
        <property type="entry name" value="DUF3310"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ABX35863.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="101" mass="11092" checksum="4D911BBF040A53A2" modified="2008-01-15" version="1">MSALNTQAGGTHYKGCAIQPIQYIHANGLDFFQGNIVKYATRYKAKNGAEDLKKVIHYAQLALELQYGIKPADELADMVRAGKSKPGAVTQCEGYVEDRND</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="52" xmlns="http://uniprot.org/uniprot">
    <accession>A9BW91</accession>
    <name>A9BW91_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Anti-FecI sigma factor, FecR</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Daci_3269</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="4" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX35907.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012205107.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_3269"/>
    <dbReference type="PRIDE" id="A9BW91"/>
    <dbReference type="EnsemblBacteria" id="ABX35907">
        <property type="protein sequence ID" value="ABX35907"/>
        <property type="gene ID" value="Daci_3269"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_3269"/>
    <dbReference type="eggNOG" id="COG3712">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_050192_0_0_4"/>
    <dbReference type="OMA" id="RYWVRVE"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006860">
        <property type="entry name" value="FecR"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR032623">
        <property type="entry name" value="FecR_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012373">
        <property type="entry name" value="Ferrdict_sens_TM"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30273">
        <property type="entry name" value="PTHR30273"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF16220">
        <property type="entry name" value="DUF4880"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04773">
        <property type="entry name" value="FecR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF018266">
        <property type="entry name" value="FecR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="DUF4880" evidence="2">
        <location>
            <begin position="19"/>
            <end position="58"/>
        </location>
    </feature>
    <feature type="domain" description="FecR" evidence="1">
        <location>
            <begin position="120"/>
            <end position="215"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF04773"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF16220"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ABX35907.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="336" mass="36481" checksum="53379F59E329CF99" modified="2008-01-15" version="1">MNAVDSQAAAPLSREIALQAAEWFVLLHSGEASEADHRAFEAWRARADVHEQAWLRALAVSQRAGSLPPTLGAPALARKQRRLGAVGRRDTVRALALLITAAPVGWLAWRAAPWMQWTSTHATATGERREWTLADGSRIVLDTGSAVDVLFDEALRRVHLSEGAVFIETAPDPQSRHRPFVVTTGQGRVRALGTRFVVRSVRERSEVAVLQGAVQITTRGGAAQQLQAGQQLWFDAMGMGRAEPADAGAAQWARGLLSADNMRLADFVAELSRYRSGWLHCDPSVADLRVTGAFQLGDADTGTDAVLANLVHLLPVQVHYRTRYWVTVAARGTPPG</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="63" xmlns="http://uniprot.org/uniprot">
    <accession>A9BWR2</accession>
    <name>A9BWR2_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Type I secretion outer membrane protein, TolC family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ordered locus">Daci_3958</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="6" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the outer membrane factor (OMF) (TC 1.B.17) family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX36589.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012205783.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_3958"/>
    <dbReference type="PRIDE" id="A9BWR2"/>
    <dbReference type="EnsemblBacteria" id="ABX36589">
        <property type="protein sequence ID" value="ABX36589"/>
        <property type="gene ID" value="Daci_3958"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_3958"/>
    <dbReference type="eggNOG" id="COG1538">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_012817_0_2_4"/>
    <dbReference type="OMA" id="YNAKQQL"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0019867">
        <property type="term" value="C:outer membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015562">
        <property type="term" value="F:efflux transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003423">
        <property type="entry name" value="OMP_efflux"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010130">
        <property type="entry name" value="T1SS_OMP_TolC"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02321">
        <property type="entry name" value="OEP"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01844">
        <property type="entry name" value="type_I_sec_TolC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4" id="KW-0732">Signal</keyword>
    <keyword evidence="2" id="KW-0813">Transport</keyword>
    <feature type="signal peptide" evidence="4">
        <location>
            <begin position="1"/>
            <end position="39"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5002735907" evidence="4">
        <location>
            <begin position="40"/>
            <end position="491"/>
        </location>
    </feature>
    <feature type="coiled-coil region" evidence="3">
        <location>
            <begin position="368"/>
            <end position="395"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00007613"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022448"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="ABX36589.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="491" mass="52062" checksum="7FB0DB352B0BA686" modified="2008-01-15" version="1">MPLLRPLAPVASALTRPYAWPLRHMALLLCAAGMGSALAQAPAPAVLAPAPAAPQSALPSLTASAPTGQNLSELVAKARGYDAQWQAQQADAQAAASRAEQARSGLLPSVGLQAGANTSHVEVSVLPGSFRSPQQNLQLSAQQPLYRPANKIAYDQGQRGVDVARAQLDSGEQNLLVRVAQAYFDVLGAQDSLAVVKAQKAAIAQQLEFAKRNFEVGTATITDSREAQARFDLAGAQEIAAENDLRVKRLVLDQIVGAVGTVPRPLAQPLQLPALMPADAQAWVDTALQGQPQLRQARLALDIAQLETKKAEAGHKPTVDLQAGYVVNRYPNGSVTPQIGTSYRTNAASVGVVMNLPLFAGFAVQNRIKETLALEDKARAQLDDAQRNVEQSTRTAFFGVQSGQAQVKALEAALASSQSALDANKLGYEVGVRINIDVLNAQSQLYQTQRDLALARYQVLLGQLKLRQAAGTLSDDDLRAIDALSLRAPAP</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="71" xmlns="http://uniprot.org/uniprot">
    <accession>A9BWY5</accession>
    <name>A9BWY5_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">DNA ligase (ATP)</fullName>
            <ecNumber evidence="2">6.5.1.1</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="13">NHEJ DNA polymerase</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="16" type="ordered locus">Daci_4339</name>
    </gene>
    <organism evidence="16 17">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="16 17" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="17">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="17" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="17">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>Mn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29035"/>
        </cofactor>
    </comment>
    <dbReference type="EC" id="6.5.1.1" evidence="2"/>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX36970.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012206142.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_4339"/>
    <dbReference type="PRIDE" id="A9BWY5"/>
    <dbReference type="EnsemblBacteria" id="ABX36970">
        <property type="protein sequence ID" value="ABX36970"/>
        <property type="gene ID" value="Daci_4339"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_4339"/>
    <dbReference type="eggNOG" id="COG1793">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="eggNOG" id="COG3285">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_008325_0_0_4"/>
    <dbReference type="OMA" id="YMANLGC"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003910">
        <property type="term" value="F:DNA ligase (ATP) activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003887">
        <property type="term" value="F:DNA-directed DNA polymerase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004527">
        <property type="term" value="F:exonuclease activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006310">
        <property type="term" value="P:DNA recombination"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006281">
        <property type="term" value="P:DNA repair"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd04862">
        <property type="entry name" value="PaeLigD_Pol_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.50.140">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012309">
        <property type="entry name" value="DNA_ligase_ATP-dep_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012310">
        <property type="entry name" value="DNA_ligase_ATP-dep_cent"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014146">
        <property type="entry name" value="LigD_ligase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014144">
        <property type="entry name" value="LigD_PE_domain"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014145">
        <property type="entry name" value="LigD_pol_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012340">
        <property type="entry name" value="NA-bd_OB-fold"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014143">
        <property type="entry name" value="NHEJ_ligase_prk"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR033651">
        <property type="entry name" value="PaeLigD_Pol-like"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04679">
        <property type="entry name" value="DNA_ligase_A_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01068">
        <property type="entry name" value="DNA_ligase_A_M"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13298">
        <property type="entry name" value="LigD_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50249">
        <property type="entry name" value="SSF50249"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR02777">
        <property type="entry name" value="LigD_PE_dom"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR02778">
        <property type="entry name" value="ligD_pol"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR02779">
        <property type="entry name" value="NHEJ_ligase_lig"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR02776">
        <property type="entry name" value="NHEJ_ligase_prk"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50160">
        <property type="entry name" value="DNA_LIGASE_A3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="10" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="9" id="KW-0239">DNA-directed DNA polymerase</keyword>
    <keyword evidence="8" id="KW-0269">Exonuclease</keyword>
    <keyword evidence="7" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="3 16" id="KW-0436">Ligase</keyword>
    <keyword evidence="11" id="KW-0464">Manganese</keyword>
    <keyword evidence="12" id="KW-0511">Multifunctional enzyme</keyword>
    <keyword evidence="6" id="KW-0540">Nuclease</keyword>
    <keyword evidence="5" id="KW-0548">Nucleotidyltransferase</keyword>
    <keyword evidence="17" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="DNA_LIGASE_A3" evidence="15">
        <location>
            <begin position="331"/>
            <end position="423"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="14">
        <location>
            <begin position="1"/>
            <end position="57"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="14">
        <location>
            <begin position="542"/>
            <end position="574"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="14">
        <location>
            <begin position="1"/>
            <end position="24"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="14">
        <location>
            <begin position="546"/>
            <end position="567"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001936"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00012727"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022598"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022695"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022722"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00022839"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00022932"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="ARBA" id="ARBA00023211"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="12">
        <source>
            <dbReference type="ARBA" id="ARBA00023268"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="13">
        <source>
            <dbReference type="ARBA" id="ARBA00029943"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="14">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="15">
        <source>
            <dbReference type="PROSITE" id="PS50160"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="16">
        <source>
            <dbReference type="EMBL" id="ABX36970.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="17">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="871" mass="95582" checksum="0723BF2BCF8988AF" modified="2008-01-15" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="52" xmlns="http://uniprot.org/uniprot">
    <accession>A9BX00</accession>
    <name>A9BX00_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ordered locus">Daci_4354</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="5" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Periplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the UPF0065 (bug) family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX36985.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012206157.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_4354"/>
    <dbReference type="PRIDE" id="A9BX00"/>
    <dbReference type="EnsemblBacteria" id="ABX36985">
        <property type="protein sequence ID" value="ABX36985"/>
        <property type="gene ID" value="Daci_4354"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_4354"/>
    <dbReference type="eggNOG" id="COG3181">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_045683_0_1_4"/>
    <dbReference type="OMA" id="AHVAYTP"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0042597">
        <property type="term" value="C:periplasmic space"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.190.150">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005064">
        <property type="entry name" value="BUG"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR042100">
        <property type="entry name" value="Bug_dom1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR42928">
        <property type="entry name" value="PTHR42928"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03401">
        <property type="entry name" value="TctC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF017082">
        <property type="entry name" value="YflP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="3">
        <location>
            <begin position="1"/>
            <end position="23"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5002735175" evidence="3">
        <location>
            <begin position="24"/>
            <end position="327"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004418"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00006987"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="ABX36985.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="327" mass="34145" checksum="B3AFE21848468B55" modified="2008-01-15" version="1">MFRQLITCTAVAAAMGLSFSAAAQGTAADYPNKPVRMIVPFPPGGGTDILARVVSNKLTEVSKWTVVPDNRAGAGGTIGITEAAKAAPTGYDMVMGQKDNVVLGPYLYKNLPWNPVKDLVPVAHVAYTPIVIATSVNSPYKTLADIVAAAKQHPGKVTYGSPGNGTSIHISGVLLEKAAGIQLVHVPYKGSNPALMDALAGNVDLLVSSVPSAIGQIKAGKLRAIAVTSAKRSSSLPDTPTLAEAGLKGFDVSTWYGLFMPKGTPTAIVTKVNAEVNKLLAMPEVRDAIQTQGAEPQSMSVADFDKMFQADFKQSKQIVESSGAKIE</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-01-19" version="55" xmlns="http://uniprot.org/uniprot">
    <accession>A9BXG7</accession>
    <name>A9BXG7_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="4">Lipoprotein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="5" type="ordered locus">Daci_5614</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="6" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Lipid-anchor</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="4">Belongs to the nlpA lipoprotein family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX38243.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012207412.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_5614"/>
    <dbReference type="EnsemblBacteria" id="ABX38243">
        <property type="protein sequence ID" value="ABX38243"/>
        <property type="gene ID" value="Daci_5614"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_5614"/>
    <dbReference type="eggNOG" id="COG1464">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_067080_3_0_4"/>
    <dbReference type="OMA" id="EIWEVVT"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016020">
        <property type="term" value="C:membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004872">
        <property type="entry name" value="Lipoprotein_NlpA"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30429">
        <property type="entry name" value="PTHR30429"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03180">
        <property type="entry name" value="Lipoprotein_9"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF002854">
        <property type="entry name" value="MetQ"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4 5" id="KW-0449">Lipoprotein</keyword>
    <keyword evidence="3" id="KW-0472">Membrane</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0732">Signal</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004635"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022729"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="PIRNR" id="PIRNR002854"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="ABX38243.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="270" mass="29242" checksum="3D83091B040A8863" modified="2008-01-15" version="1">MDKRVFLRGLAAGASVAAMSGAIRAAQAGPLRVGVRGGVDEEIWEVVTRVAREQGLQVKPVVISGAASPNEALNNGDIEANSFQHVPFLRDQNQQRGYRLVAAGDTYISPIAFYSKKHKRLADLPAGARLGIPNDPSNQTRALVVLQDQGILKLREGFDPFKGTAGLADIASYQKKVQLVEAASVVLARSLDDLDASAIVNSFAYQAGLIATRDGIAVERRERNPYVNIIAVHERDRAAPWVAALLRAYQSEPVRQFIVSRYQGSVLPAF</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="61" xmlns="http://uniprot.org/uniprot">
    <accession>A9BXP3</accession>
    <name>A9BXP3_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Type II secretion system protein I/J</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ordered locus">Daci_5691</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="5" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Single-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX38319.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_5691"/>
    <dbReference type="EnsemblBacteria" id="ABX38319">
        <property type="protein sequence ID" value="ABX38319"/>
        <property type="gene ID" value="Daci_5691"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_5691"/>
    <dbReference type="eggNOG" id="COG2165">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_121289_2_1_4"/>
    <dbReference type="OMA" id="DCSQGNL"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016020">
        <property type="term" value="C:membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015627">
        <property type="term" value="C:type II protein secretion system complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015628">
        <property type="term" value="P:protein secretion by the type II secretion system"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045584">
        <property type="entry name" value="Pilin-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003413">
        <property type="entry name" value="T2SS_GspI_C"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02501">
        <property type="entry name" value="T2SSI"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54523">
        <property type="entry name" value="SSF54523"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="2">
        <location>
            <begin position="1"/>
            <end position="20"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5005661079" evidence="2">
        <location>
            <begin position="21"/>
            <end position="107"/>
        </location>
    </feature>
    <feature type="domain" description="T2SSI" evidence="3">
        <location>
            <begin position="31"/>
            <end position="105"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004167"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF02501"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="ABX38319.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="107" mass="11619" checksum="CC6757B0952A764E" modified="2008-01-15" version="1">MLVALGIVGIALMAGLQATSALTLNAERQSEVLQAQLCAQNELVRMRLSRQMPPVGDNSLTCEQGGRQLQVRLSVRPTPNPSFRRVDALVVTAEHPVLRVSTIVGRF</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="75" xmlns="http://uniprot.org/uniprot">
    <accession>A9BY78</accession>
    <name>A9BY78_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Response regulator receiver protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Daci_1573</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="4" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX34217.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012203502.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_1573"/>
    <dbReference type="PRIDE" id="A9BY78"/>
    <dbReference type="EnsemblBacteria" id="ABX34217">
        <property type="protein sequence ID" value="ABX34217"/>
        <property type="gene ID" value="Daci_1573"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_1573"/>
    <dbReference type="eggNOG" id="COG0745">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_000445_69_17_4"/>
    <dbReference type="OMA" id="RDYITKP"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000160">
        <property type="term" value="P:phosphorelay signal transduction system"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011006">
        <property type="entry name" value="CheY-like_superfamily"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001789">
        <property type="entry name" value="Sig_transdc_resp-reg_receiver"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00072">
        <property type="entry name" value="Response_reg"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00448">
        <property type="entry name" value="REC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52172">
        <property type="entry name" value="SSF52172"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50110">
        <property type="entry name" value="RESPONSE_REGULATORY"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0597">Phosphoprotein</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Response regulatory" evidence="2">
        <location>
            <begin position="5"/>
            <end position="121"/>
        </location>
    </feature>
    <feature type="modified residue" description="4-aspartylphosphate" evidence="1">
        <location>
            <position position="54"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00169"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS50110"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ABX34217.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="121" mass="13605" checksum="00F7FF1C03E3FEAA" modified="2008-01-15" version="1">MPIRKVLVVDDSKTELMFLSDMLQKQGLQVRTAENGEEALRSLAEERPDLILMDVVMPGQNGFQLTRAITRDPLYADLPIIMCTSKNQETDRVWGMRQGARDYITKPVDAGELQAKIAALN</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2021-06-02" version="29" xmlns="http://uniprot.org/uniprot">
    <accession>A9BYB0</accession>
    <name>A9BYB0_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Daci_1605</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="2" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX34249.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012203534.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_1605"/>
    <dbReference type="EnsemblBacteria" id="ABX34249">
        <property type="protein sequence ID" value="ABX34249"/>
        <property type="gene ID" value="Daci_1605"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_1605"/>
    <dbReference type="HOGENOM" id="CLU_2681628_0_0_4"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ABX34249.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="74" mass="7925" checksum="9C5C0274A3D1A6B7" modified="2008-01-15" version="1">MDSLLYMGVRITPASLPSDASPGAWLPRATLLEVASGKALEAVTDDQPCDTQPEADARALRLGKRHVMKVLHQG</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="49" xmlns="http://uniprot.org/uniprot">
    <accession>A9BYF1</accession>
    <name>A9BYF1_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">Phage-tail_3 domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Daci_1647</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="4" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX34290.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_1647"/>
    <dbReference type="PRIDE" id="A9BYF1"/>
    <dbReference type="EnsemblBacteria" id="ABX34290">
        <property type="protein sequence ID" value="ABX34290"/>
        <property type="gene ID" value="Daci_1647"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_1647"/>
    <dbReference type="eggNOG" id="COG3391">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_279885_0_0_4"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.130.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR032876">
        <property type="entry name" value="J_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015943">
        <property type="entry name" value="WD40/YVTN_repeat-like_dom_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13550">
        <property type="entry name" value="Phage-tail_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Phage-tail_3" evidence="2">
        <location>
            <begin position="318"/>
            <end position="476"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="811"/>
            <end position="838"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF13550"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ABX34290.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="1124" mass="120613" checksum="CB104554FC794FE6" modified="2008-01-15" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-01-19" version="39" xmlns="http://uniprot.org/uniprot">
    <accession>A9BYF3</accession>
    <name>A9BYF3_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Daci_1649</name>
        <name evidence="2" type="ordered locus">Daci_4079</name>
    </gene>
    <organism evidence="1 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
            <strain evidence="1">SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="1" key="3">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX34292.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX36710.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_1649"/>
    <dbReference type="EnsemblBacteria" id="ABX34292">
        <property type="protein sequence ID" value="ABX34292"/>
        <property type="gene ID" value="Daci_1649"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="ABX36710">
        <property type="protein sequence ID" value="ABX36710"/>
        <property type="gene ID" value="Daci_4079"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_1649"/>
    <dbReference type="KEGG" id="dac:Daci_4079"/>
    <dbReference type="HOGENOM" id="CLU_1178689_0_0_4"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013320">
        <property type="entry name" value="ConA-like_dom_sf"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF49899">
        <property type="entry name" value="SSF49899"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ABX34292.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX36710.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="235" mass="24866" checksum="CCA17655878F3504" modified="2008-01-15" version="1">MSGIIGHQGILLKQQMAGTEVLRMHLDTSTGFSDSTGINVPVAVGDVAISTDEKTTGDASAFFSGGSGAIRVPCTDPNALINPYDKDFSISCDVFVQGFQDGGSTGYIISHGGGLNYSWPNISLSYLSTGQLLFALRSSQTSGAPDISYFVPIGSMNMNEWVEVLISRRSDKFRVRTNGVLLYEVTSNLPVQRTANNAGLGFGAGTYSNEGNVPKEGIKGYIDNIRMVVGGSPGF</sequence>
</entry>
<entry dataset="Swiss-Prot" created="2009-03-24" modified="2022-08-03" version="76" xmlns="http://uniprot.org/uniprot">
    <accession>A9BYK5</accession>
    <name>SYS_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Serine--tRNA ligase</fullName>
            <ecNumber evidence="1">6.1.1.11</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="1">Seryl-tRNA synthetase</fullName>
            <shortName evidence="1">SerRS</shortName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="1">Seryl-tRNA(Ser/Sec) synthetase</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="1" type="primary">serS</name>
        <name type="ordered locus">Daci_1908</name>
    </gene>
    <organism>
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference key="1">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain>DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="1">Catalyzes the attachment of serine to tRNA(Ser). Is also able to aminoacylate tRNA(Sec) with serine, to form the misacylated tRNA L-seryl-tRNA(Sec), which will be further converted into selenocysteinyl-tRNA(Sec).</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>ATP + L-serine + tRNA(Ser) = AMP + diphosphate + H(+) + L-seryl-tRNA(Ser)</text>
            <dbReference type="Rhea" id="RHEA:12292"/>
            <dbReference type="Rhea" id="RHEA-COMP:9669"/>
            <dbReference type="Rhea" id="RHEA-COMP:9703"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:33019"/>
            <dbReference type="ChEBI" id="CHEBI:33384"/>
            <dbReference type="ChEBI" id="CHEBI:78442"/>
            <dbReference type="ChEBI" id="CHEBI:78533"/>
            <dbReference type="ChEBI" id="CHEBI:456215"/>
            <dbReference type="EC" id="6.1.1.11"/>
        </reaction>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>ATP + L-serine + tRNA(Sec) = AMP + diphosphate + H(+) + L-seryl-tRNA(Sec)</text>
            <dbReference type="Rhea" id="RHEA:42580"/>
            <dbReference type="Rhea" id="RHEA-COMP:9742"/>
            <dbReference type="Rhea" id="RHEA-COMP:10128"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:33019"/>
            <dbReference type="ChEBI" id="CHEBI:33384"/>
            <dbReference type="ChEBI" id="CHEBI:78442"/>
            <dbReference type="ChEBI" id="CHEBI:78533"/>
            <dbReference type="ChEBI" id="CHEBI:456215"/>
            <dbReference type="EC" id="6.1.1.11"/>
        </reaction>
    </comment>
    <comment type="pathway">
        <text evidence="1">Aminoacyl-tRNA biosynthesis; selenocysteinyl-tRNA(Sec) biosynthesis; L-seryl-tRNA(Sec) from L-serine and tRNA(Sec): step 1/1.</text>
    </comment>
    <comment type="subunit">
        <text evidence="1">Homodimer. The tRNA molecule binds across the dimer.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="domain">
        <text evidence="1">Consists of two distinct domains, a catalytic core and a N-terminal extension that is involved in tRNA binding.</text>
    </comment>
    <comment type="similarity">
        <text evidence="1">Belongs to the class-II aminoacyl-tRNA synthetase family. Type-1 seryl-tRNA synthetase subfamily.</text>
    </comment>
    <dbReference type="EC" id="6.1.1.11" evidence="1"/>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX34548.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012203833.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A9BYK5"/>
    <dbReference type="SMR" id="A9BYK5"/>
    <dbReference type="STRING" id="398578.Daci_1908"/>
    <dbReference type="PRIDE" id="A9BYK5"/>
    <dbReference type="EnsemblBacteria" id="ABX34548">
        <property type="protein sequence ID" value="ABX34548"/>
        <property type="gene ID" value="Daci_1908"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_1908"/>
    <dbReference type="eggNOG" id="COG0172">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_023797_0_1_4"/>
    <dbReference type="OMA" id="SPCFRRE"/>
    <dbReference type="UniPathway" id="UPA00906">
        <property type="reaction ID" value="UER00895"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004828">
        <property type="term" value="F:serine-tRNA ligase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016260">
        <property type="term" value="P:selenocysteine biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0097056">
        <property type="term" value="P:selenocysteinyl-tRNA(Sec) biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniPathway"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006434">
        <property type="term" value="P:seryl-tRNA aminoacylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd00770">
        <property type="entry name" value="SerRS_core"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.287.40">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.930.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00176">
        <property type="entry name" value="Ser_tRNA_synth_type1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002314">
        <property type="entry name" value="aa-tRNA-synt_IIb"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006195">
        <property type="entry name" value="aa-tRNA-synth_II"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045864">
        <property type="entry name" value="aa-tRNA-synth_II/BPL/LPL"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002317">
        <property type="entry name" value="Ser-tRNA-ligase_type_1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015866">
        <property type="entry name" value="Ser-tRNA-synth_1_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR042103">
        <property type="entry name" value="SerRS_1_N_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR033729">
        <property type="entry name" value="SerRS_core"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010978">
        <property type="entry name" value="tRNA-bd_arm"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43697">
        <property type="entry name" value="PTHR43697"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02403">
        <property type="entry name" value="Seryl_tRNA_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00587">
        <property type="entry name" value="tRNA-synt_2b"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF001529">
        <property type="entry name" value="Ser-tRNA-synth_IIa"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00981">
        <property type="entry name" value="TRNASYNTHSER"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46589">
        <property type="entry name" value="SSF46589"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55681">
        <property type="entry name" value="SSF55681"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00414">
        <property type="entry name" value="serS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50862">
        <property type="entry name" value="AA_TRNA_LIGASE_II"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword id="KW-0030">Aminoacyl-tRNA synthetase</keyword>
    <keyword id="KW-0067">ATP-binding</keyword>
    <keyword id="KW-0963">Cytoplasm</keyword>
    <keyword id="KW-0436">Ligase</keyword>
    <keyword id="KW-0547">Nucleotide-binding</keyword>
    <keyword id="KW-0648">Protein biosynthesis</keyword>
    <keyword id="KW-1185">Reference proteome</keyword>
    <feature type="chain" id="PRO_1000098059" description="Serine--tRNA ligase">
        <location>
            <begin position="1"/>
            <end position="438"/>
        </location>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <begin position="245"/>
            <end position="247"/>
        </location>
        <ligand>
            <name>L-serine</name>
            <dbReference type="ChEBI" id="CHEBI:33384"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <begin position="276"/>
            <end position="278"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <position position="299"/>
        </location>
        <ligand>
            <name>L-serine</name>
            <dbReference type="ChEBI" id="CHEBI:33384"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <begin position="363"/>
            <end position="366"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <position position="398"/>
        </location>
        <ligand>
            <name>L-serine</name>
            <dbReference type="ChEBI" id="CHEBI:33384"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000255" key="1">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00176"/>
        </source>
    </evidence>
    <sequence length="438" mass="48209" checksum="C08025D2530B17A3" modified="2008-01-15" version="1">MLDILLLRKDLDSAVARLETRKKPQAFLNVEAFQSLEAERKSLQTRTEELQSKRNQLSKQIGMLMGKGEKDAAEAAKAEVGSLKTELDQSATRLEQIQGELQTMLLAVPNLPHDSVPVGADESGNVEARRWGTPKTFDFEVKDHVDVGQPLGLDFDMGVKLSGSRFTVMKGPIARLHRALAQFMIDLQTDSHGYTECYVPYAVNADSLKGTGQLPKFEGDLFAAKKGGQDGEPVPDNAALYLIPTAEVPLTNFVRDVVVAEDQLPIKLTAHSPCFRSEAGSYGRDTRGMIRQHQFDKVEMVQIVHPEKSYEALEEMTGHAEAVLQKLGLPYRVMSLCTGDMGFGAAKTYDLEVWLPAQNTYREISSVSNCEAFQARRLQARFKNAQGKNELVHTLNGSGLAVGRTLVAVLENYQNADGSVTIPEALRPYMGGQTLLKA</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-01-19" version="60" xmlns="http://uniprot.org/uniprot">
    <accession>A9BZ52</accession>
    <name>A9BZ52_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="6">Xanthine/uracil/vitamin C permease</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ordered locus">Daci_2514</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="7" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX35152.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012204433.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_2514"/>
    <dbReference type="EnsemblBacteria" id="ABX35152">
        <property type="protein sequence ID" value="ABX35152"/>
        <property type="gene ID" value="Daci_2514"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_2514"/>
    <dbReference type="eggNOG" id="COG2233">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_017959_8_0_4"/>
    <dbReference type="OMA" id="PFVMVPG"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015205">
        <property type="term" value="F:nucleobase transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006043">
        <property type="entry name" value="NCS2"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00860">
        <property type="entry name" value="Xan_ur_permease"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4 5" id="KW-0472">Membrane</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 5" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="3 5" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="25"/>
            <end position="50"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="89"/>
            <end position="106"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="112"/>
            <end position="132"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="144"/>
            <end position="166"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="178"/>
            <end position="196"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="208"/>
            <end position="229"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="334"/>
            <end position="356"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="362"/>
            <end position="379"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="391"/>
            <end position="408"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="420"/>
            <end position="442"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="ABX35152.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="457" mass="47387" checksum="4ACEED0C034E66A3" modified="2008-01-15" version="1">MTEPTSSYEGRLIARPDDRVSLSQALLLGLQHVMAMDVYVVPFIIASALALSQADAASMIQSTFLAAGVGTLIQTAWCMRMPVAQGPSYIPLGAILAVAFGAGGGFGGMGAVYGALIPGALIVIALGALGWFHRVIRWLVPPIVGGTIILVVGLSLLPIALSANVFSVHGGMTVNQSSALASVSAALLIAAMMLGLRFDNRLGRWMRLSSVIIALAGGTAVAWAMGLFAWQPVADAPWLTLPKLAGIDYPLQFSLPAVLTFVVIYLVVMAETTGTWFAVSAVINQPITSRQLDRGAVGEGLSCSVAALIGATPVTGYSTNAGVISITGVASRMVFIAAGLVLACLGFLGKFSALIAAIPSPVIGGMFAVVCVTIAMAGIRILRHVRLDERAMLVVGVPIICSFFATLAPKDWVQTLPDMLQYLLGSAVTVGAMAAMVMNLILPRAQGDDAPAKDQVV</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="47" xmlns="http://uniprot.org/uniprot">
    <accession>A9BZ72</accession>
    <name>A9BZ72_DELAS</name>
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        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Daci_2534</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
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            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
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            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="2" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX35172.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_2534"/>
    <dbReference type="PRIDE" id="A9BZ72"/>
    <dbReference type="EnsemblBacteria" id="ABX35172">
        <property type="protein sequence ID" value="ABX35172"/>
        <property type="gene ID" value="Daci_2534"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_2534"/>
    <dbReference type="eggNOG" id="ENOG502ZNVE">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_104091_0_0_4"/>
    <dbReference type="OMA" id="WCARRCA"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ABX35172.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="228" mass="25742" checksum="606AC025F5B10914" modified="2008-01-15" version="1">MHMPRSPIRTFMPGLRFDTQWRYEVGTQTRKTRWATLPTVPDAQCLPDPLGAWWCARRCAAVLRQRAWLQVQLPLQLTPQPGPQELAQVLALLLPGWKAQLENFPALAPLRCAQAMQRGGSAMLLLEMPGHRFRHPALFWTWVIGMERSPLRLRSANHLTRLEPYPPAQPLPEALLAMPARRSRPGANRHVTRIQMDAAGRCISDDAAWPLDGCRWLACITLEQLGGG</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="58" xmlns="http://uniprot.org/uniprot">
    <accession>A9BZ79</accession>
    <name>A9BZ79_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Transposase IS3/IS911 family protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Daci_2541</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
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            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="2" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX35179.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_2541"/>
    <dbReference type="PRIDE" id="A9BZ79"/>
    <dbReference type="EnsemblBacteria" id="ABX35179">
        <property type="protein sequence ID" value="ABX35179"/>
        <property type="gene ID" value="Daci_2541"/>
    </dbReference>
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    <dbReference type="eggNOG" id="COG2963">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
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    <dbReference type="OMA" id="MGPERRW"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
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        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004803">
        <property type="term" value="F:transposase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006313">
        <property type="term" value="P:transposition, DNA-mediated"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009057">
        <property type="entry name" value="Homeobox-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002514">
        <property type="entry name" value="Transposase_8"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01527">
        <property type="entry name" value="HTH_Tnp_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46689">
        <property type="entry name" value="SSF46689"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ABX35179.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="101" mass="10980" checksum="D24B7C43C99AD737" modified="2008-01-15" version="1">MRRTYEPGMSVSLVARQEDVSAGLLFQWRKLERQGALTAVSAGEAVVPASELAAARAEIAKLQRVLGKKTLENEILKEAVEYAAEKLPTCPAMATDVPVPW</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="51" xmlns="http://uniprot.org/uniprot">
    <accession>A9BZL0</accession>
    <name>A9BZL0_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">PepSY-associated TM helix domain protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_3280</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX35918.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012205118.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_3280"/>
    <dbReference type="PRIDE" id="A9BZL0"/>
    <dbReference type="EnsemblBacteria" id="ABX35918">
        <property type="protein sequence ID" value="ABX35918"/>
        <property type="gene ID" value="Daci_3280"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_3280"/>
    <dbReference type="eggNOG" id="COG3182">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_025664_2_0_4"/>
    <dbReference type="OMA" id="WELAVFF"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005625">
        <property type="entry name" value="PepSY-ass_TM"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR34219">
        <property type="entry name" value="PTHR34219"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03929">
        <property type="entry name" value="PepSY_TM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="29"/>
            <end position="50"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="172"/>
            <end position="193"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="214"/>
            <end position="237"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="382"/>
            <end position="404"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="424"/>
            <end position="446"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="462"/>
            <end position="482"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="489"/>
            <end position="505"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="525"/>
            <end position="543"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX35918.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="571" mass="60954" checksum="9CCEA15E202F2C46" modified="2008-01-15" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="62" xmlns="http://uniprot.org/uniprot">
    <accession>A9BZV2</accession>
    <name>A9BZV2_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Regulator of chromosome condensation RCC1</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Daci_3372</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="2" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX36010.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012205210.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_3372"/>
    <dbReference type="PRIDE" id="A9BZV2"/>
    <dbReference type="EnsemblBacteria" id="ABX36010">
        <property type="protein sequence ID" value="ABX36010"/>
        <property type="gene ID" value="Daci_3372"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_3372"/>
    <dbReference type="eggNOG" id="COG5184">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_737169_0_0_4"/>
    <dbReference type="OMA" id="CAPDATR"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.130.10.30">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009091">
        <property type="entry name" value="RCC1/BLIP-II"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000408">
        <property type="entry name" value="Reg_chr_condens"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00633">
        <property type="entry name" value="RCCNDNSATION"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50985">
        <property type="entry name" value="SSF50985"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50012">
        <property type="entry name" value="RCC1_3"/>
        <property type="match status" value="3"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ABX36010.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="375" mass="39006" checksum="E79FAB5092A48A65" modified="2008-01-15" version="1">MLTIQQVVAGPQRSVLITSEGVFAWGNLEVLRTLPEGVDAAEVCAPDATRIGHRSFSQPVPQRLSPRGTRWEGLVDAGHSLLAWADGQAYAVAPQVRDAAGAVPRPLALGRQDAGVRRIWASEQQAYVQDREGALWGWSDAMPGAQRVQGLPSVRSVSVGMGHALALDARGQVWSWGANAAGQLGQGDLVQRSRAQRVVLPQGAAAVVAVAAGATHSLALDEKGRLWGWGSNHQGQLDQGLQAAYSPGPVRIAVPGRLSSLAAGLHFSAATTQGGQVLAWGWNGLGQLGQGDAAPRAGFHAVPGLAAVQQISVGGTHVLALERGGRCWAWGDNRHGACQGQDGAQAQSRPHALALHALNDLTETNAIAGTAKEAL</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="85" xmlns="http://uniprot.org/uniprot">
    <accession>A9BZX6</accession>
    <name>A9BZX6_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="9">Polar amino acid ABC transporter, inner membrane subunit</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="9" type="ordered locus">Daci_3604</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="9 10" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="10" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="7">Cell membrane</location>
            <topology evidence="7">Multi-pass membrane protein</topology>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the binding-protein-dependent transport system permease family. HisMQ subfamily.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX36238.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012205438.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_3604"/>
    <dbReference type="PRIDE" id="A9BZX6"/>
    <dbReference type="EnsemblBacteria" id="ABX36238">
        <property type="protein sequence ID" value="ABX36238"/>
        <property type="gene ID" value="Daci_3604"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_3604"/>
    <dbReference type="eggNOG" id="COG0765">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_019602_16_1_4"/>
    <dbReference type="OMA" id="YEEQWRP"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043190">
        <property type="term" value="C:ATP-binding cassette (ABC) transporter complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0022857">
        <property type="term" value="F:transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006865">
        <property type="term" value="P:amino acid transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd06261">
        <property type="entry name" value="TM_PBP2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.3720.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010065">
        <property type="entry name" value="AA_ABC_transptr_permease_3TM"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043429">
        <property type="entry name" value="ArtM/GltK/GlnP/TcyL/YhdX-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000515">
        <property type="entry name" value="MetI-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035906">
        <property type="entry name" value="MetI-like_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30614">
        <property type="entry name" value="PTHR30614"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00528">
        <property type="entry name" value="BPD_transp_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF161098">
        <property type="entry name" value="SSF161098"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01726">
        <property type="entry name" value="HEQRo_perm_3TM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50928">
        <property type="entry name" value="ABC_TM1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-0029">Amino-acid transport</keyword>
    <keyword evidence="6 7" id="KW-0472">Membrane</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 7" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="5 7" id="KW-1133">Transmembrane helix</keyword>
    <keyword evidence="7" id="KW-0813">Transport</keyword>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="31"/>
            <end position="49"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="100"/>
            <end position="119"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="126"/>
            <end position="146"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="158"/>
            <end position="180"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="201"/>
            <end position="221"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="324"/>
            <end position="347"/>
        </location>
    </feature>
    <feature type="domain" description="ABC transmembrane type-1" evidence="8">
        <location>
            <begin position="156"/>
            <end position="342"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00010072"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022970"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="RuleBase" id="RU363032"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="PROSITE" id="PS50928"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="ABX36238.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="360" mass="38326" checksum="AAECAE1AAA7B8108" modified="2008-01-15" version="1">MSAVLRAPALPVAPPRVPLAQRLRASLFPDALSGLITATLLLAALWAGWKLLAWGLLDAETAANPNTCRAAAGACWGVVRDKYRLVFLGRYPMAEQWRPVAASLLLLGSVGVAALPRFFGRAGMAMLLAGLTGFGVLMAGGVAGLAPVPSDLWGGLPLTLFLAVIACLAGVPLGILLALGRRSSLPLIRILCTGFIEAVRGVPLITLLFFGAFVLPMLVPAQWRVDPMVRIAVCLAAFSAAYLAEVFRGGLQAVPQGQVMAAQAMGFTRVQVLRHVVLPQALRVTIAPTVSNFIGAVKDTSLVAIVNIYDITGSLKMAMSDPHWIAYFVEMYMVVCTVYLLIGLGIARYGRFLESRYALQ</sequence>
</entry>
<entry dataset="Swiss-Prot" created="2009-05-26" modified="2022-08-03" version="71" xmlns="http://uniprot.org/uniprot">
    <accession>A9BZY6</accession>
    <name>DAPE_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Succinyl-diaminopimelate desuccinylase</fullName>
            <shortName evidence="1">SDAP desuccinylase</shortName>
            <ecNumber evidence="1">3.5.1.18</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="1">N-succinyl-LL-2,6-diaminoheptanedioate amidohydrolase</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="1" type="primary">dapE</name>
        <name type="ordered locus">Daci_3614</name>
    </gene>
    <organism>
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference key="1">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain>DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="1">Catalyzes the hydrolysis of N-succinyl-L,L-diaminopimelic acid (SDAP), forming succinate and LL-2,6-diaminoheptanedioate (DAP), an intermediate involved in the bacterial biosynthesis of lysine and meso-diaminopimelic acid, an essential component of bacterial cell walls.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>H2O + N-succinyl-(2S,6S)-2,6-diaminoheptanedioate = (2S,6S)-2,6-diaminoheptanedioate + succinate</text>
            <dbReference type="Rhea" id="RHEA:22608"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:30031"/>
            <dbReference type="ChEBI" id="CHEBI:57609"/>
            <dbReference type="ChEBI" id="CHEBI:58087"/>
            <dbReference type="EC" id="3.5.1.18"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </cofactor>
        <cofactor evidence="1">
            <name>Co(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:48828"/>
        </cofactor>
        <text evidence="1">Binds 2 Zn(2+) or Co(2+) ions per subunit.</text>
    </comment>
    <comment type="pathway">
        <text evidence="1">Amino-acid biosynthesis; L-lysine biosynthesis via DAP pathway; LL-2,6-diaminopimelate from (S)-tetrahydrodipicolinate (succinylase route): step 3/3.</text>
    </comment>
    <comment type="subunit">
        <text evidence="1">Homodimer.</text>
    </comment>
    <comment type="similarity">
        <text evidence="1">Belongs to the peptidase M20A family. DapE subfamily.</text>
    </comment>
    <dbReference type="EC" id="3.5.1.18" evidence="1"/>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX36248.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012205448.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A9BZY6"/>
    <dbReference type="SMR" id="A9BZY6"/>
    <dbReference type="STRING" id="398578.Daci_3614"/>
    <dbReference type="PRIDE" id="A9BZY6"/>
    <dbReference type="EnsemblBacteria" id="ABX36248">
        <property type="protein sequence ID" value="ABX36248"/>
        <property type="gene ID" value="Daci_3614"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_3614"/>
    <dbReference type="eggNOG" id="COG0624">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_021802_4_0_4"/>
    <dbReference type="OMA" id="LNSHHDT"/>
    <dbReference type="UniPathway" id="UPA00034">
        <property type="reaction ID" value="UER00021"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0050897">
        <property type="term" value="F:cobalt ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009014">
        <property type="term" value="F:succinyl-diaminopimelate desuccinylase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008270">
        <property type="term" value="F:zinc ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0019877">
        <property type="term" value="P:diaminopimelate biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009089">
        <property type="term" value="P:lysine biosynthetic process via diaminopimelate"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01690">
        <property type="entry name" value="DapE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036264">
        <property type="entry name" value="Bact_exopeptidase_dim_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005941">
        <property type="entry name" value="DapE_proteobac"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002933">
        <property type="entry name" value="Peptidase_M20"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011650">
        <property type="entry name" value="Peptidase_M20_dimer"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07687">
        <property type="entry name" value="M20_dimer"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01546">
        <property type="entry name" value="Peptidase_M20"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55031">
        <property type="entry name" value="SSF55031"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01246">
        <property type="entry name" value="dapE_proteo"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword id="KW-0028">Amino-acid biosynthesis</keyword>
    <keyword id="KW-0170">Cobalt</keyword>
    <keyword id="KW-0220">Diaminopimelate biosynthesis</keyword>
    <keyword id="KW-0378">Hydrolase</keyword>
    <keyword id="KW-0457">Lysine biosynthesis</keyword>
    <keyword id="KW-0479">Metal-binding</keyword>
    <keyword id="KW-1185">Reference proteome</keyword>
    <keyword id="KW-0862">Zinc</keyword>
    <feature type="chain" id="PRO_0000375541" description="Succinyl-diaminopimelate desuccinylase">
        <location>
            <begin position="1"/>
            <end position="386"/>
        </location>
    </feature>
    <feature type="active site" evidence="1">
        <location>
            <position position="75"/>
        </location>
    </feature>
    <feature type="active site" description="Proton acceptor" evidence="1">
        <location>
            <position position="140"/>
        </location>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <position position="73"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
            <label>1</label>
        </ligand>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <position position="106"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
            <label>1</label>
        </ligand>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <position position="106"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
            <label>2</label>
        </ligand>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <position position="141"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
            <label>2</label>
        </ligand>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <position position="169"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
            <label>1</label>
        </ligand>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <position position="355"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
            <label>2</label>
        </ligand>
    </feature>
    <evidence type="ECO:0000255" key="1">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01690"/>
        </source>
    </evidence>
    <sequence length="386" mass="41935" checksum="0C94576E19DBA356" modified="2008-01-15" version="1">MSRTLQLTEQLISLPSVTPEDAGCLELLADALQPMGFACERIDSGPDSFRVRNLWARRSGTGADRPVLVFAGHTDVVPTGPLEQWSSPPFVPTHRDGKLYGRGASDMKTSIAAFVVALEEFLAETPAPSFDIALLLTSDEEGPSVDGTKVVVELLRERGERLDWCIVGEPTSVERTGDMIKNGRRGTMSGRLTVKGIQGHIAYPQLARNPIHQALPALAELAATRWDEGNAFFPPTSWQISNMHGGTGASNVIPGHVTIDFNFRFCTESTAESLQQRVHAVLDHHGLEYELAWTIGGQPFLTTPGTLVNAVQAAIRAETGLETELSTTGGTSDGRFIAQICSQVVEVGPSNASIHKIDEHIVVADIEPIKNIYRRTLQELQRQQAV</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="30" xmlns="http://uniprot.org/uniprot">
    <accession>A9C047</accession>
    <name>A9C047_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_3677</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX36309.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012205505.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="PRIDE" id="A9C047"/>
    <dbReference type="EnsemblBacteria" id="ABX36309">
        <property type="protein sequence ID" value="ABX36309"/>
        <property type="gene ID" value="Daci_3677"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_3677"/>
    <dbReference type="HOGENOM" id="CLU_2218793_0_0_4"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="1">
        <location>
            <begin position="1"/>
            <end position="29"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5002735261" evidence="1">
        <location>
            <begin position="30"/>
            <end position="106"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX36309.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="106" mass="11994" checksum="71429907132505AE" modified="2008-01-15" version="1">MSRYSFFRSFLAGAVLLITAYGDAKNATACENHDFNLVRTNVLKKLKEKFPQYAFDITKVTFSPGEKVPFWHVEAITQSNGKELVVFAMHYCEGSVEVTALNPYHP</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="77" xmlns="http://uniprot.org/uniprot">
    <accession>A9C065</accession>
    <name>A9C065_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Transcriptional regulator, BadM/Rrf2 family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Daci_4000</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="2" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX36631.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012205825.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_4000"/>
    <dbReference type="PRIDE" id="A9C065"/>
    <dbReference type="EnsemblBacteria" id="ABX36631">
        <property type="protein sequence ID" value="ABX36631"/>
        <property type="gene ID" value="Daci_4000"/>
    </dbReference>
    <dbReference type="GeneID" id="60688325"/>
    <dbReference type="KEGG" id="dac:Daci_4000"/>
    <dbReference type="eggNOG" id="COG1959">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_107144_0_0_4"/>
    <dbReference type="OMA" id="YGLTIMM"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003700">
        <property type="term" value="F:DNA-binding transcription factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003690">
        <property type="term" value="F:double-stranded DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010242">
        <property type="entry name" value="TF_HTH_IscR"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000944">
        <property type="entry name" value="Tscrpt_reg_Rrf2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036390">
        <property type="entry name" value="WH_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33221">
        <property type="entry name" value="PTHR33221"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02082">
        <property type="entry name" value="Rrf2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46785">
        <property type="entry name" value="SSF46785"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR02010">
        <property type="entry name" value="IscR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00738">
        <property type="entry name" value="rrf2_super"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51197">
        <property type="entry name" value="HTH_RRF2_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ABX36631.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="178" mass="19344" checksum="1E1B82D4DDD1D760" modified="2008-01-15" version="1">MRLTTKGRFAVTAMIDLALRQNNGPVTLAAISQRQQISLSYLEQLFGKLRRHELVESTRGPGGGYTLARKAGDITVADIIVSVDEPIDATQCGGKENCLGEAGRCMTHELWAALNQRMVEFLDSVTLQKLVDEQLAKGIQIEDKPVVRRAISTAPVVKPIRVNAPNSVFALGNAFAKS</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-01-19" version="56" xmlns="http://uniprot.org/uniprot">
    <accession>A9C088</accession>
    <name>A9C088_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="8">Chromate transporter</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="8" type="ordered locus">Daci_4023</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="9" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the chromate ion transporter (CHR) (TC 2.A.51) family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX36654.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012205848.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_4023"/>
    <dbReference type="EnsemblBacteria" id="ABX36654">
        <property type="protein sequence ID" value="ABX36654"/>
        <property type="gene ID" value="Daci_4023"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_4023"/>
    <dbReference type="eggNOG" id="COG2059">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_018106_1_2_4"/>
    <dbReference type="OMA" id="MYAISQA"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015109">
        <property type="term" value="F:chromate transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003370">
        <property type="entry name" value="Chromate_transpt"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02417">
        <property type="entry name" value="Chromate_transp"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="6 7" id="KW-0472">Membrane</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4 7" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="5 7" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="19"/>
            <end position="39"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="60"/>
            <end position="82"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="94"/>
            <end position="118"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="139"/>
            <end position="156"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="168"/>
            <end position="201"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00005262"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="ABX36654.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="202" mass="21592" checksum="ED7543FE52DF1FFA" modified="2008-01-15" version="1">MNAAHQIALNLQPADWLQLLLYFLTLSLMAVGGAIATAPDMHRFLVDGHGWLSEAQFSSSIAIAQAAPGPNVLFIALLGWNLGLNAGGGTGPLAWTFGALGVTICMVGILLPSSLLAWQASRWGQRNRNRRGVRAFKQGMGPLVIGLLLATGWLLGSASGRPAQDWRLWLLTLACALLVWRTRIHLLWLLGAGALLGALGWI</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="87" xmlns="http://uniprot.org/uniprot">
    <accession>A9C0B5</accession>
    <name>A9C0B5_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">tRNA (guanine-N(7)-)-methyltransferase</fullName>
            <ecNumber evidence="1">2.1.1.33</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="1">tRNA (guanine(46)-N(7))-methyltransferase</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="1">tRNA(m7G46)-methyltransferase</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="1" type="primary">trmB</name>
        <name evidence="3" type="ordered locus">Daci_4050</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="4" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="1">Catalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>guanosine(46) in tRNA + S-adenosyl-L-methionine = N(7)-methylguanosine(46) in tRNA + S-adenosyl-L-homocysteine</text>
            <dbReference type="Rhea" id="RHEA:42708"/>
            <dbReference type="Rhea" id="RHEA-COMP:10188"/>
            <dbReference type="Rhea" id="RHEA-COMP:10189"/>
            <dbReference type="ChEBI" id="CHEBI:57856"/>
            <dbReference type="ChEBI" id="CHEBI:59789"/>
            <dbReference type="ChEBI" id="CHEBI:74269"/>
            <dbReference type="ChEBI" id="CHEBI:74480"/>
            <dbReference type="EC" id="2.1.1.33"/>
        </reaction>
    </comment>
    <comment type="pathway">
        <text evidence="1">tRNA modification; N(7)-methylguanine-tRNA biosynthesis.</text>
    </comment>
    <comment type="similarity">
        <text evidence="1">Belongs to the class I-like SAM-binding methyltransferase superfamily. TrmB family.</text>
    </comment>
    <dbReference type="EC" id="2.1.1.33" evidence="1"/>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX36681.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012205875.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_4050"/>
    <dbReference type="PRIDE" id="A9C0B5"/>
    <dbReference type="EnsemblBacteria" id="ABX36681">
        <property type="protein sequence ID" value="ABX36681"/>
        <property type="gene ID" value="Daci_4050"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_4050"/>
    <dbReference type="eggNOG" id="COG0220">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_050910_0_1_4"/>
    <dbReference type="OMA" id="PDPWHKS"/>
    <dbReference type="UniPathway" id="UPA00989"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008176">
        <property type="term" value="F:tRNA (guanine-N7-)-methyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.150">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01057">
        <property type="entry name" value="tRNA_methyltr_TrmB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029063">
        <property type="entry name" value="SAM-dependent_MTases_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003358">
        <property type="entry name" value="tRNA_(Gua-N-7)_MeTrfase_Trmb"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR23417">
        <property type="entry name" value="PTHR23417"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02390">
        <property type="entry name" value="Methyltransf_4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53335">
        <property type="entry name" value="SSF53335"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00091">
        <property type="entry name" value="TIGR00091"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51625">
        <property type="entry name" value="SAM_MT_TRMB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="1 3" id="KW-0489">Methyltransferase</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0949">S-adenosyl-L-methionine</keyword>
    <keyword evidence="1 3" id="KW-0808">Transferase</keyword>
    <keyword evidence="1" id="KW-0819">tRNA processing</keyword>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="1"/>
            <end position="43"/>
        </location>
    </feature>
    <feature type="region of interest" description="Interaction with RNA" evidence="1">
        <location>
            <begin position="173"/>
            <end position="178"/>
        </location>
    </feature>
    <feature type="region of interest" description="Substrate binding" evidence="1">
        <location>
            <begin position="238"/>
            <end position="241"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="2">
        <location>
            <begin position="12"/>
            <end position="28"/>
        </location>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <position position="92"/>
        </location>
        <ligand>
            <name>S-adenosyl-L-methionine</name>
            <dbReference type="ChEBI" id="CHEBI:59789"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <position position="117"/>
        </location>
        <ligand>
            <name>S-adenosyl-L-methionine</name>
            <dbReference type="ChEBI" id="CHEBI:59789"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <position position="144"/>
        </location>
        <ligand>
            <name>S-adenosyl-L-methionine</name>
            <dbReference type="ChEBI" id="CHEBI:59789"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <position position="167"/>
        </location>
        <ligand>
            <name>S-adenosyl-L-methionine</name>
            <dbReference type="ChEBI" id="CHEBI:59789"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <position position="171"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <position position="203"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01057"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ABX36681.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="259" mass="28495" checksum="17C5D9A8AD5A4AEB" modified="2008-01-15" version="1">MDGDTPNTMSAAPGAPHDSSSPSTPAAARTGQPPEGVAHPKTIKSYVRRAGRTTTGQAKAFEELGPRFVLNYQAAPLDASATYGRQAPLILEIGFGMGEATAHIARVRPDDNFLCCEVHEPGVGALLKRIGEQDISNIRILQHDAVEVIDNMLPEASLDGIHIFFPDPWHKKKHNKRRLIQEPLVAKLARRLRPGGYIHCATDWEPYAVQMLEVLGAEPLLANTAEGYAAKPDYRPLTKFENRGIRLGHGVWDLVFERR</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="59" xmlns="http://uniprot.org/uniprot">
    <accession>A9C0H4</accession>
    <name>A9C0H4_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Substrate-binding region of ABC-type glycine betaine transport system</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Daci_4416</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="4" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX37047.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012206219.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_4416"/>
    <dbReference type="PRIDE" id="A9C0H4"/>
    <dbReference type="EnsemblBacteria" id="ABX37047">
        <property type="protein sequence ID" value="ABX37047"/>
        <property type="gene ID" value="Daci_4416"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_4416"/>
    <dbReference type="eggNOG" id="COG0715">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_028871_2_1_4"/>
    <dbReference type="OMA" id="EVKWANI"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015168">
        <property type="entry name" value="SsuA/THI5"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006311">
        <property type="entry name" value="TAT_signal"/>
    </dbReference>
    <dbReference type="Pfam" id="PF09084">
        <property type="entry name" value="NMT1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51318">
        <property type="entry name" value="TAT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="1">
        <location>
            <begin position="1"/>
            <end position="30"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5002733228" evidence="1">
        <location>
            <begin position="31"/>
            <end position="330"/>
        </location>
    </feature>
    <feature type="domain" description="NMT1" evidence="2">
        <location>
            <begin position="74"/>
            <end position="188"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF09084"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ABX37047.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="330" mass="35934" checksum="6EEA2669DFC2C2CB" modified="2008-01-15" version="1">MERVNKRRFLLAGPSLLAAAALASTTAARAAADPRTRLVVADQSELLRHLLDASGERKRLGFQLELPNFAGGPAIFEAIRAGALDIAYVGDTPPIQARAAGVQLPIIATFTRERAQYRLVQRADAGIERLADLRGKRLSYVEGSGRQVFLIEALTRAGLTLADVKLVNLRVAELNDALRAKAVDVAVLMEPHVTRLGKQIGARPVPDPQERTLLPATSYIYARPDVLADPAKSQAIVDFLGAFVRAGKWSNGHEQEWGRHYYTQFQRIDAESTAAILASQSDLLFQTAAEAQPHHQKLIDILHAAGSLPQRLDAAGSFVSTYDRVIVANR</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="32" xmlns="http://uniprot.org/uniprot">
    <accession>A9C0N6</accession>
    <name>A9C0N6_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Daci_4480</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="2" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX37109.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_4480"/>
    <dbReference type="PRIDE" id="A9C0N6"/>
    <dbReference type="EnsemblBacteria" id="ABX37109">
        <property type="protein sequence ID" value="ABX37109"/>
        <property type="gene ID" value="Daci_4480"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_4480"/>
    <dbReference type="eggNOG" id="COG3209">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_3342871_0_0_4"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001826">
        <property type="entry name" value="RHS"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03527">
        <property type="entry name" value="RHS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ABX37109.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="37" mass="4284" checksum="38A60BE7DCAA17E9" modified="2008-01-15" version="1">MQTKVQEQEKEQHARIAIHHYHCDHLGTPMALTDQTG</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="69" xmlns="http://uniprot.org/uniprot">
    <accession>A9C0S1</accession>
    <name>A9C0S1_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Pyridoxal-5'-phosphate-dependent protein beta subunit</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ordered locus">Daci_5756</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="5" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>pyridoxal 5'-phosphate</name>
            <dbReference type="ChEBI" id="CHEBI:597326"/>
        </cofactor>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX38384.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012207553.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_5756"/>
    <dbReference type="PRIDE" id="A9C0S1"/>
    <dbReference type="EnsemblBacteria" id="ABX38384">
        <property type="protein sequence ID" value="ABX38384"/>
        <property type="gene ID" value="Daci_5756"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_5756"/>
    <dbReference type="eggNOG" id="COG1171">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_021152_4_2_4"/>
    <dbReference type="OMA" id="QTQHLGQ"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.1100">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001926">
        <property type="entry name" value="PLP-dep"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036052">
        <property type="entry name" value="Trypto_synt_PLP_dependent"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00291">
        <property type="entry name" value="PALP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53686">
        <property type="entry name" value="SSF53686"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0663">Pyridoxal phosphate</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="PALP" evidence="3">
        <location>
            <begin position="18"/>
            <end position="306"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001933"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022898"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF00291"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="ABX38384.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="320" mass="33853" checksum="59FC164AA2DB7654" modified="2008-01-15" version="1">MTSLPTYDDVAAAAQRIQGHAHRTPVLTSRTLDDALGARVFLKCENLQRMGAFKFRGAFNALSRFSPAQRKAGVVAFSSGNHAQAIALAARLLEIPATIVMPHDAPAAKVAATKGYGGQVVVYDRYTEDREQIGRDLAERHGLTLIPPYDHADVLAGQGTAAKELFEETGPLDALFVPLGGGGLLSGTALSTRALSPDCALYGVEPEAGNDGQQSLRAGRIVHIETPKTIADGAQTQHLGGITFPIIQRDVTDILTASDAELVDAMGFLATRMKLVVEPTGCLGLAAARQKSEELRGRRVGIILSGGNVDMQRFCSLLGA</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="72" xmlns="http://uniprot.org/uniprot">
    <accession>A9C0T4</accession>
    <name>A9C0T4_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Aminotransferase</fullName>
            <ecNumber evidence="1">2.6.1.-</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Daci_5769</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="4" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>pyridoxal 5'-phosphate</name>
            <dbReference type="ChEBI" id="CHEBI:597326"/>
        </cofactor>
    </comment>
    <comment type="similarity">
        <text evidence="1">Belongs to the class-I pyridoxal-phosphate-dependent aminotransferase family.</text>
    </comment>
    <dbReference type="EC" id="2.6.1.-" evidence="1"/>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX38397.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012207566.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_5769"/>
    <dbReference type="PRIDE" id="A9C0T4"/>
    <dbReference type="EnsemblBacteria" id="ABX38397">
        <property type="protein sequence ID" value="ABX38397"/>
        <property type="gene ID" value="Daci_5769"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_5769"/>
    <dbReference type="eggNOG" id="COG0436">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_017584_4_3_4"/>
    <dbReference type="OMA" id="CAGMIGR"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030170">
        <property type="term" value="F:pyridoxal phosphate binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008483">
        <property type="term" value="F:transaminase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:1901605">
        <property type="term" value="P:alpha-amino acid metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009058">
        <property type="term" value="P:biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.640.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.1150.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004839">
        <property type="entry name" value="Aminotransferase_I/II"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004838">
        <property type="entry name" value="NHTrfase_class1_PyrdxlP-BS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015424">
        <property type="entry name" value="PyrdxlP-dep_Trfase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015421">
        <property type="entry name" value="PyrdxlP-dep_Trfase_major"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015422">
        <property type="entry name" value="PyrdxlP-dep_Trfase_small"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00155">
        <property type="entry name" value="Aminotran_1_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53383">
        <property type="entry name" value="SSF53383"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00105">
        <property type="entry name" value="AA_TRANSFER_CLASS_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="1 3" id="KW-0032">Aminotransferase</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1 3" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Aminotran_1_2" evidence="2">
        <location>
            <begin position="35"/>
            <end position="396"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="RuleBase" id="RU000481"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF00155"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ABX38397.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="423" mass="44658" checksum="5F1FED24F1B0C6DF" modified="2008-01-15" version="1">MTTPFPLSQRVQRVRLSPNAAASARATALARQGRDIIALTTGEPDFDTPEPIKQAAIAALARGETKYTPTPGTAALRQAISAKYRRENGLDFDAGQIIVSNGGKQVIYNALAATLDAGDEVIVPAPYWPSFPDIVRVNDGTPVIVDCGIEQGFKLTPAVLQAAITPRTRWLVLNTPGNPSGAVYSREELAALAQVLRQHPQVLVLLDELYEHIWFTPQAPAHWLAVAPDLRERTLLVNGVSKTYAMTGWRIGWGAGPAALVQAMVVIQSQASSGPNSVAQAAAAAALQSPDQSFVQQARNAYARRAQRVTQALAQVPGLALLPPGGSFFAFVHCGALIGHLRPDGQPIASDTDLTEWLLESEGVAAVDGGAYGLSPYFRISTAASDEVLAEATARIARAVAALKDPAAQAQAHAQPAALEAVP</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="58" xmlns="http://uniprot.org/uniprot">
    <accession>A9C151</accession>
    <name>A9C151_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Amine oxidase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_5886</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX38514.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012207683.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_5886"/>
    <dbReference type="PRIDE" id="A9C151"/>
    <dbReference type="EnsemblBacteria" id="ABX38514">
        <property type="protein sequence ID" value="ABX38514"/>
        <property type="gene ID" value="Daci_5886"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_5886"/>
    <dbReference type="eggNOG" id="COG2907">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_028123_1_0_4"/>
    <dbReference type="OMA" id="RAWASWN"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016491">
        <property type="term" value="F:oxidoreductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.50.50.60">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002937">
        <property type="entry name" value="Amino_oxidase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036188">
        <property type="entry name" value="FAD/NAD-bd_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01593">
        <property type="entry name" value="Amino_oxidase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51905">
        <property type="entry name" value="SSF51905"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Amino_oxidase" evidence="1">
        <location>
            <begin position="11"/>
            <end position="279"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF01593"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX38514.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="448" mass="48591" checksum="68E6FEC2241B4B7F" modified="2008-01-15" version="1">MHRIAVIGSGIAGLAAASRLAAAPGGPAVTLLEAGGHFGGHANTVDLTLGGVSQGVDTGFLVFNHRTYPLLTRLFEQLQVPTAAAEMSFSVQVPEADGRAGLEWSGSSLGGVFAQRGNLLRPRFLKMLAEILRFNRLATRIAQEGDEARLRSAIGDFLDDHGFGAAFRQDYLLPMMGCIWSCPTDQMLRFPVATLIRFCHNHGLIQVTDRPQWHTVRGGSRQYVRRMVAALLKDGRHEARLNAPVLGLRRAAHGALLQTANGTEPFDAVVLACHSDQALRLLGSDATPQERSVLGAIRYQPNQAVLHTDASVLPRRQAAWAAWNYERAADPGRDQAGVCLHYLLNRLQPLPWQQPVMVSLNPVRPIDEGQVHARIEYSHPVFDLAAIEAQGRVADVQGQRRTWFCGAWCGYGFHEDGLRSGLDAADGLLRALPALPVLPASAAFEGVA</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="63" xmlns="http://uniprot.org/uniprot">
    <accession>A9C173</accession>
    <name>A9C173_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="8">Xanthine/uracil/vitamin C permease</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="8" type="ordered locus">Daci_5908</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="9" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the nucleobase:cation symporter-2 (NCS2) (TC 2.A.40) family. Azg-like subfamily.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX38536.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012207705.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_5908"/>
    <dbReference type="PRIDE" id="A9C173"/>
    <dbReference type="EnsemblBacteria" id="ABX38536">
        <property type="protein sequence ID" value="ABX38536"/>
        <property type="gene ID" value="Daci_5908"/>
    </dbReference>
    <dbReference type="GeneID" id="60690269"/>
    <dbReference type="KEGG" id="dac:Daci_5908"/>
    <dbReference type="eggNOG" id="COG2252">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_024508_0_1_4"/>
    <dbReference type="OMA" id="RKGSYFF"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015205">
        <property type="term" value="F:nucleobase transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:1904823">
        <property type="term" value="P:purine nucleobase transmembrane transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045018">
        <property type="entry name" value="Azg-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR026033">
        <property type="entry name" value="Azg-like_bact_archaea"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006043">
        <property type="entry name" value="NCS2"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43337">
        <property type="entry name" value="PTHR43337"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00860">
        <property type="entry name" value="Xan_ur_permease"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF005353">
        <property type="entry name" value="PbuG"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="6 7" id="KW-0472">Membrane</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4 7" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="5 7" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="21"/>
            <end position="38"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="50"/>
            <end position="70"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="77"/>
            <end position="95"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="101"/>
            <end position="121"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="133"/>
            <end position="157"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="169"/>
            <end position="187"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="194"/>
            <end position="212"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="242"/>
            <end position="262"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="317"/>
            <end position="334"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="379"/>
            <end position="402"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="414"/>
            <end position="431"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00005697"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="ABX38536.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="432" mass="45503" checksum="687DD8879B778FE8" modified="2008-01-15" version="1">MNWMERVFKLSEHGTNVRTELVAGLTTFLTMAYIIFVNPSILGDAGMPKGAVFVATCLIAALGTTIMALYANYPIALAPGMGLNAYFAYVVVLHMGFTWQAALGAVFVSGCLFLLVTLFGLRELIIKGIPQSIRIAITVGIGLFLALIALKSAGIVAASPATFVTLGDLHKPEVILASLGFLIIVVLDRLKVPGAILIGIVAVTVASFFFAGNEFHGVFSAPPSIAPTFLQLDIKSALTGGILNVVLVFFLVELFDATGTLMGVAKRAGLLVPSRMGRFNRSLLADSGAIFAGSLLGTSSTTAYVESAAGVQAGGRTGLTALTVAVLFLCCLFLSPLAGVVPGYATAPALFFVACLMLKELTEIEWGETTEAIPAAVTALLMPFTYSVANGLAFGFITYAVLKLFTGRAKEVHWMVWLIGGVFLFKFVYIGG</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2021-09-29" version="72" xmlns="http://uniprot.org/uniprot">
    <accession>A9C176</accession>
    <name>A9C176_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="7">Drug resistance transporter, EmrB/QacA subfamily</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ordered locus">Daci_5911</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="8" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX38539.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012207708.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_5911"/>
    <dbReference type="EnsemblBacteria" id="ABX38539">
        <property type="protein sequence ID" value="ABX38539"/>
        <property type="gene ID" value="Daci_5911"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_5911"/>
    <dbReference type="eggNOG" id="COG2814">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_000960_28_0_4"/>
    <dbReference type="OMA" id="TALFMEN"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0022857">
        <property type="term" value="F:transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.1250.20">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004638">
        <property type="entry name" value="EmrB-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011701">
        <property type="entry name" value="MFS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020846">
        <property type="entry name" value="MFS_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036259">
        <property type="entry name" value="MFS_trans_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07690">
        <property type="entry name" value="MFS_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF103473">
        <property type="entry name" value="SSF103473"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00711">
        <property type="entry name" value="efflux_EmrB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50850">
        <property type="entry name" value="MFS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4 5" id="KW-0472">Membrane</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 5" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="3 5" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="20"/>
            <end position="42"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="54"/>
            <end position="74"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="86"/>
            <end position="105"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="111"/>
            <end position="132"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="144"/>
            <end position="166"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="172"/>
            <end position="193"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="205"/>
            <end position="224"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="236"/>
            <end position="256"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="277"/>
            <end position="298"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="304"/>
            <end position="323"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="344"/>
            <end position="372"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="409"/>
            <end position="430"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="442"/>
            <end position="463"/>
        </location>
    </feature>
    <feature type="domain" description="MFS" evidence="6">
        <location>
            <begin position="20"/>
            <end position="468"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="PROSITE" id="PS50850"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="ABX38539.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="480" mass="51356" checksum="E4F694A77DF72A42" modified="2008-01-15" version="1">MIPEDKSASASTTSSSRSVLLWLVAIGFFMQTLDGTIVNTALPTMADALGESPLRMQSVIVAYSLTMAMLIPASGWMADRFGTRRVYLWAIALFVLGSVLCAIAPNLQLMVAARVLQGMGGALLMPVGRLAVLRAFPREQFLKAMSFVAIPGLVGPLIGPTLGGWMVEYVSWHWIFLVNVPVGLIGLAATLRFMPVGDRFAVKRFDGVGYALLAFGMVAVSLALDSMSGKGIHGAMVFVLLIFGLASLAAYWLHALRRPDPLFAPELFAVRSLRVGLLGNLFSRLGSSCMPFLIPLVLQVCLGFSPLQAGMMMLPTVLASMAMKRQTTTLIQRIGYRRVLMGNTLVLSLMIASFGTVSTALPLWVVIVQLLIFGATNSMQFTAMNTVTLKDLDAGNASSGNSLLSMVQMLAMGMGVAAAGAVLAGFSEWFGGDTPQHTLNAFRATFVCMGAVTLASTMIFSQLGDDEDVRPKPLEPAEHE</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="88" xmlns="http://uniprot.org/uniprot">
    <accession>A9C191</accession>
    <name>A9C191_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="5">Peptide chain release factor 3</fullName>
            <shortName evidence="5">RF-3</shortName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="5" type="primary">prfC</name>
        <name evidence="7" type="ordered locus">Daci_5926</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="8" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="5">Increases the formation of ribosomal termination complexes and stimulates activities of RF-1 and RF-2. It binds guanine nucleotides and has strong preference for UGA stop codons. It may interact directly with the ribosome. The stimulation of RF-1 and RF-2 is significantly reduced by GTP and GDP, but not by GMP.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1 5">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2 5">Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. PrfC subfamily.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX38554.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_5926"/>
    <dbReference type="PRIDE" id="A9C191"/>
    <dbReference type="EnsemblBacteria" id="ABX38554">
        <property type="protein sequence ID" value="ABX38554"/>
        <property type="gene ID" value="Daci_5926"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_5926"/>
    <dbReference type="eggNOG" id="COG4108">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
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    </dbReference>
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        <property type="project" value="UniProtKB-SubCell"/>
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        <property type="project" value="InterPro"/>
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        <property type="term" value="F:translation release factor activity, codon specific"/>
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        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006449">
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        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd04169">
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        <property type="match status" value="1"/>
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        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00072">
        <property type="entry name" value="Rel_fac_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035647">
        <property type="entry name" value="EFG_III/V"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004161">
        <property type="entry name" value="EFTu-like_2"/>
    </dbReference>
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        <property type="entry name" value="G_TR_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
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        <property type="entry name" value="PrfC"/>
    </dbReference>
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        <property type="entry name" value="RF3_C"/>
    </dbReference>
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        <property type="entry name" value="RF3_dom_3_sf"/>
    </dbReference>
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        <property type="entry name" value="RF3_GTP-bd"/>
    </dbReference>
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        <property type="entry name" value="Small_GTP-bd_dom"/>
    </dbReference>
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        <property type="entry name" value="T_Tr_GTP-bd_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009000">
        <property type="entry name" value="Transl_B-barrel_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43556">
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        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00009">
        <property type="entry name" value="GTP_EFTU"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03144">
        <property type="entry name" value="GTP_EFTU_D2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF16658">
        <property type="entry name" value="RF3_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00315">
        <property type="entry name" value="ELONGATNFCT"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50447">
        <property type="entry name" value="SSF50447"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54980">
        <property type="entry name" value="SSF54980"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00503">
        <property type="entry name" value="prfC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00231">
        <property type="entry name" value="small_GTP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00301">
        <property type="entry name" value="G_TR_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51722">
        <property type="entry name" value="G_TR_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3 5" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="4 5" id="KW-0342">GTP-binding</keyword>
    <keyword evidence="5" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="5" id="KW-0648">Protein biosynthesis</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Tr-type G" evidence="6">
        <location>
            <begin position="32"/>
            <end position="300"/>
        </location>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <begin position="41"/>
            <end position="48"/>
        </location>
        <ligand>
            <name>GTP</name>
            <dbReference type="ChEBI" id="CHEBI:37565"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <begin position="109"/>
            <end position="113"/>
        </location>
        <ligand>
            <name>GTP</name>
            <dbReference type="ChEBI" id="CHEBI:37565"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <begin position="163"/>
            <end position="166"/>
        </location>
        <ligand>
            <name>GTP</name>
            <dbReference type="ChEBI" id="CHEBI:37565"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004496"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00009978"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022490"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023134"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00072"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="PROSITE" id="PS51722"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="ABX38554.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="565" mass="62790" checksum="68739D56E01A4F5F" modified="2008-01-15" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="76" xmlns="http://uniprot.org/uniprot">
    <accession>A9C1A0</accession>
    <name>A9C1A0_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="14">Fimbrial biogenesis outer membrane usher protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="14" type="ordered locus">Daci_5935</name>
    </gene>
    <organism evidence="14 15">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="14 15" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="15">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="15" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="15">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="2 10">Cell outer membrane</location>
            <topology evidence="2 10">Multi-pass membrane protein</topology>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="3 10">Belongs to the fimbrial export usher family.</text>
    </comment>
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        <property type="protein sequence ID" value="ABX38563.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
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    <dbReference type="PRIDE" id="A9C1A0"/>
    <dbReference type="EnsemblBacteria" id="ABX38563">
        <property type="protein sequence ID" value="ABX38563"/>
        <property type="gene ID" value="Daci_5935"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_5935"/>
    <dbReference type="eggNOG" id="COG3188">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_009120_1_0_4"/>
    <dbReference type="OMA" id="QACKTID"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009279">
        <property type="term" value="C:cell outer membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015473">
        <property type="term" value="F:fimbrial usher porin activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009297">
        <property type="term" value="P:pilus assembly"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
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        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.40.2610">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.10.20.410">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000015">
        <property type="entry name" value="Fimb_usher"/>
    </dbReference>
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        <property type="entry name" value="Fimbrial_membr_usher_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR042186">
        <property type="entry name" value="FimD_plug_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025949">
        <property type="entry name" value="PapC-like_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043142">
        <property type="entry name" value="PapC-like_C_sf"/>
    </dbReference>
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        <property type="entry name" value="PapC_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037224">
        <property type="entry name" value="PapC_N_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30451">
        <property type="entry name" value="PTHR30451"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13953">
        <property type="entry name" value="PapC_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13954">
        <property type="entry name" value="PapC_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00577">
        <property type="entry name" value="Usher"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF141729">
        <property type="entry name" value="SSF141729"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01151">
        <property type="entry name" value="FIMBRIAL_USHER"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="9 10" id="KW-0998">Cell outer membrane</keyword>
    <keyword evidence="10" id="KW-1029">Fimbrium biogenesis</keyword>
    <keyword evidence="8 10" id="KW-0472">Membrane</keyword>
    <keyword evidence="15" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="7" id="KW-0732">Signal</keyword>
    <keyword evidence="6 10" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="5" id="KW-1134">Transmembrane beta strand</keyword>
    <keyword evidence="4 10" id="KW-0813">Transport</keyword>
    <feature type="domain" description="PapC_N" evidence="13">
        <location>
            <begin position="83"/>
            <end position="228"/>
        </location>
    </feature>
    <feature type="domain" description="PapC_C" evidence="12">
        <location>
            <begin position="805"/>
            <end position="870"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="11">
        <location>
            <begin position="1"/>
            <end position="33"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="11">
        <location>
            <begin position="990"/>
            <end position="1019"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00004571"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00008064"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022448"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022452"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022729"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00023237"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="RuleBase" id="RU003884"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="12">
        <source>
            <dbReference type="Pfam" id="PF13953"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="13">
        <source>
            <dbReference type="Pfam" id="PF13954"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="14">
        <source>
            <dbReference type="EMBL" id="ABX38563.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="15">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="1040" mass="110507" checksum="E0F96EB56B28CA97" modified="2008-01-15" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="62" xmlns="http://uniprot.org/uniprot">
    <accession>A9C1A5</accession>
    <name>A9C1A5_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Fimbrial protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Daci_5940</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="4" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX38568.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_5940"/>
    <dbReference type="PRIDE" id="A9C1A5"/>
    <dbReference type="EnsemblBacteria" id="ABX38568">
        <property type="protein sequence ID" value="ABX38568"/>
        <property type="gene ID" value="Daci_5940"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_5940"/>
    <dbReference type="eggNOG" id="COG3539">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_058392_6_1_4"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009289">
        <property type="term" value="C:pilus"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0007155">
        <property type="term" value="P:cell adhesion"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.40.1090">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000259">
        <property type="entry name" value="Adhesion_dom_fimbrial"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036937">
        <property type="entry name" value="Adhesion_dom_fimbrial_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008966">
        <property type="entry name" value="Adhesion_dom_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00419">
        <property type="entry name" value="Fimbrial"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF49401">
        <property type="entry name" value="SSF49401"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="1">
        <location>
            <begin position="1"/>
            <end position="23"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5002735300" evidence="1">
        <location>
            <begin position="24"/>
            <end position="335"/>
        </location>
    </feature>
    <feature type="domain" description="Fimbrial" evidence="2">
        <location>
            <begin position="187"/>
            <end position="335"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF00419"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ABX38568.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="335" mass="35271" checksum="D3F664FFEA2C8920" modified="2008-01-15" version="1">MNMYKLFAFSMGIIFSTISASHAAFCMPADSNPTTDGKNHYIASYPVNQALSLPININSEPNGKVFAVISLNPVIDNKRYSSIPARVVCSGFGRPSFSGFGVPDDRIYPSNVPGIGLRMSMEGIGTIPSDRPTLTNSYTIPEGEKSTITIDFIKTGPISTIFGEIQLAGPYMEMKIAGALAAQYVFSGVTLVPINPTCTLVSDSISVPLGTHPDTRFTGLGATTDKVPFSIQLSCSGGDPNTQIKPFVTLSGTTDTQVPSVLALTGSQVSGVGVEVLRNGAIQGFGAANGWQAGTISQGTANFQIDLEARYRQIRNTVSGGGSANALATFTIDYQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-05-25" version="41" xmlns="http://uniprot.org/uniprot">
    <accession>A9C1Y5</accession>
    <name>A9C1Y5_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Transcriptional regulatory protein, MerR family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Daci_2983</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="2" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX35621.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012204827.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_2983"/>
    <dbReference type="EnsemblBacteria" id="ABX35621">
        <property type="protein sequence ID" value="ABX35621"/>
        <property type="gene ID" value="Daci_2983"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_2983"/>
    <dbReference type="eggNOG" id="ENOG5032Z5Z">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_144710_2_1_4"/>
    <dbReference type="OMA" id="PFYEPAE"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ABX35621.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="111" mass="12669" checksum="3BB6B231E6437F4D" modified="2008-01-15" version="1">MSTPLYPFYEPAELLGEGALDLQDLARHCQRNTDWVVERVQTGVLYCENEPPGEATAPQAQWRFSSQTLVRARRIAHLEHSFDADPQLAALTADLIEEVQMLRRKLQALQH</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="63" xmlns="http://uniprot.org/uniprot">
    <accession>A9C263</accession>
    <name>A9C263_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Secretion protein HlyD family protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ordered locus">Daci_3061</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="5" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX35699.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_3061"/>
    <dbReference type="PRIDE" id="A9C263"/>
    <dbReference type="EnsemblBacteria" id="ABX35699">
        <property type="protein sequence ID" value="ABX35699"/>
        <property type="gene ID" value="Daci_3061"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_3061"/>
    <dbReference type="eggNOG" id="COG0845">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_023976_4_2_4"/>
    <dbReference type="OMA" id="AVLIRYQ"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR039562">
        <property type="entry name" value="MFP_biotin_lipoyl_2"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13533">
        <property type="entry name" value="Biotin_lipoyl_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="2" id="KW-0472">Membrane</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="2" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="35"/>
            <end position="54"/>
        </location>
    </feature>
    <feature type="domain" description="Biotin_lipoyl_2" evidence="3">
        <location>
            <begin position="74"/>
            <end position="115"/>
        </location>
    </feature>
    <feature type="coiled-coil region" evidence="1">
        <location>
            <begin position="149"/>
            <end position="176"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF13533"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="ABX35699.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="424" mass="47597" checksum="4C46BD154B47B256" modified="2008-01-15" version="1">MNEKQRTSIFRKEALQRFERQEHGPMLLARSNHSWLLVSLAFAITFFCTLYLFLGSYRPRATVSGILVPADGAIKVMAPVNGIVSELRIQEGQRVKQGDVLFVMADQRSQTGNQQTTKISDLRLASLAQRQESLKRLRTTTQQLGMTNEAGLRRQHDNINEELQRNQQELDLYARRIQALSKIVANHRELAEKKYISHLELQNKEEQLSSLETQLLGAQRSRSQLTRSSANLLSEIHQAPIKVAGQLAEIDRDLASLELETTEIASRDGFAITAPISGRVTAINANRGQSVSSQALAVIVPENAPLMAHLFAPSKALGFVQSGQSVRLRYEPYPYQTYGMHEGIVLEVSNSPLRPEDFAILSTTIKQEGMYRVTVKIKSQIITKNGKQTTLFPGIALEADIQQDKRRLIDWILAPIRGNANRHL</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="26" xmlns="http://uniprot.org/uniprot">
    <accession>A9C2C2</accession>
    <name>A9C2C2_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_3428</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX36066.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="PRIDE" id="A9C2C2"/>
    <dbReference type="EnsemblBacteria" id="ABX36066">
        <property type="protein sequence ID" value="ABX36066"/>
        <property type="gene ID" value="Daci_3428"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_3428"/>
    <dbReference type="HOGENOM" id="CLU_1432415_0_0_4"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="1">
        <location>
            <begin position="1"/>
            <end position="20"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5002732778" evidence="1">
        <location>
            <begin position="21"/>
            <end position="189"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX36066.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="189" mass="20775" checksum="6AC7F078D4644313" modified="2008-01-15" version="1">MREYAVLITVLTSALFSAHAQQVYKCGNTYSQTPCAPDAKAVDIRASDGCESAQNRYRSDCFDKRWAESDKESAKLSKEIALGKLRVQKLIDENGPITPPSDATLARNYEACQAAIRTKLKDPDSAKFDAFTRSAKAAPALDYPTWHAAIVYSGLVNAKNSYGGYTGSKFAWCAFDLAEQRILFTRGPD</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2021-06-02" version="58" xmlns="http://uniprot.org/uniprot">
    <accession>A9C2J3</accession>
    <name>A9C2J3_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Benzoate transporter</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_3710</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX36342.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012205538.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_3710"/>
    <dbReference type="EnsemblBacteria" id="ABX36342">
        <property type="protein sequence ID" value="ABX36342"/>
        <property type="gene ID" value="Daci_3710"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_3710"/>
    <dbReference type="eggNOG" id="COG3135">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_041268_2_0_4"/>
    <dbReference type="OMA" id="FGSHAFN"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0042925">
        <property type="term" value="F:benzoate transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004711">
        <property type="entry name" value="Benzoate_Transporter"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30199">
        <property type="entry name" value="PTHR30199"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03594">
        <property type="entry name" value="BenE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00843">
        <property type="entry name" value="benE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="15"/>
            <end position="38"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="50"/>
            <end position="72"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="102"/>
            <end position="121"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="127"/>
            <end position="146"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="175"/>
            <end position="193"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="214"/>
            <end position="236"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="256"/>
            <end position="284"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="296"/>
            <end position="321"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="327"/>
            <end position="349"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="361"/>
            <end position="390"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX36342.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="418" mass="43280" checksum="C0DFA6682D594629" modified="2008-01-15" version="1">MPSSDTHSPLRFSDLIHPVVAGLISVIVNYGGTFILVFQAAKVAGLSPELTASWVWSISIGVGVTGLVLSWLSREPIITAWSTPAAAFLVTALATTPYAEAVGAYVVSAAAFVVLGLSGWFERVIRLIPPGVASGLLAGILLQFGIKAFGGMSVDPLLAGLLIVAYVLLKRLTARYAVVGILALGLAFLLAQDRVDLSGLQLRFAAPVFTRPEFTLNALLSVALPLFLITLTGQYMPGMLVLRNDGFKTSANPIVTLTGLGSLLMAPFGSHAFNIAAITAAICTGKEAHEEPSRRWIAGIAAGVFYILVGVFGVTLAAVFMAFPATFITTLAGLALLGTIGGSLANALADAKTREASLITFLAAAANISMLGIGGAFWGLVIGLVAHAVLNGQWPRRAARSEAGTGNVPAADAAIKRS</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="32" xmlns="http://uniprot.org/uniprot">
    <accession>A9C2K4</accession>
    <name>A9C2K4_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">T2SSG domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_3721</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX36353.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="PRIDE" id="A9C2K4"/>
    <dbReference type="EnsemblBacteria" id="ABX36353">
        <property type="protein sequence ID" value="ABX36353"/>
        <property type="gene ID" value="Daci_3721"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_3721"/>
    <dbReference type="HOGENOM" id="CLU_2600283_0_0_4"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045584">
        <property type="entry name" value="Pilin-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013545">
        <property type="entry name" value="T2SS_protein-GspG_C"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08334">
        <property type="entry name" value="T2SSG"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54523">
        <property type="entry name" value="SSF54523"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="T2SSG" evidence="1">
        <location>
            <begin position="21"/>
            <end position="65"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF08334"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX36353.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="79" mass="9394" checksum="E7F3770CA627ED82" modified="2008-01-15" version="1">MFKEKFNRYPKDLDELAPPEGDFIYPTARILDAWEQPIIYKYTPTESKTFKLYSIGENNKDESGDGDDLNFWRLKIKIQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-01-19" version="27" xmlns="http://uniprot.org/uniprot">
    <accession>A9C320</accession>
    <name>A9C320_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Daci_4193</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="2" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX36824.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="ABX36824">
        <property type="protein sequence ID" value="ABX36824"/>
        <property type="gene ID" value="Daci_4193"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_4193"/>
    <dbReference type="HOGENOM" id="CLU_1977883_0_0_4"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ABX36824.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="126" mass="14096" checksum="B1E5F658B738D64E" modified="2008-01-15" version="1">MKQSYGKNRLLERAAVLKFPQLTFPNRPEANRRLLKTEGFRGLLKQGCVLVLRSEFQPCNNGINRSAAAGIEQRPFDCGMDLGDGAERAIPQGAQIGDELRVALPVGIVVERLFWRGILLFWTRSA</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="47" xmlns="http://uniprot.org/uniprot">
    <accession>A9C3H1</accession>
    <name>A9C3H1_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Daci_4653</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="2" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX37282.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012206452.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_4653"/>
    <dbReference type="PRIDE" id="A9C3H1"/>
    <dbReference type="EnsemblBacteria" id="ABX37282">
        <property type="protein sequence ID" value="ABX37282"/>
        <property type="gene ID" value="Daci_4653"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_4653"/>
    <dbReference type="eggNOG" id="COG3749">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_115811_1_0_4"/>
    <dbReference type="OMA" id="QMERTGF"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008318">
        <property type="entry name" value="UCP030820"/>
    </dbReference>
    <dbReference type="Pfam" id="PF06073">
        <property type="entry name" value="DUF934"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF030820">
        <property type="entry name" value="UCP030820"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ABX37282.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="127" mass="14144" checksum="97D2AFB249B94803" modified="2008-01-15" version="1">MKIIAAQEHQSPAEGQQTIIAPANDADPFTLDLTGVQRIDLNFPKFTDGRAFSQARLLRKRLGFQGEIRATGDVLIDQLVQMQRCGFDVAVLREGVDIADAQRQLDRFHGFYQGDAVHPEPHFVKAA</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="44" xmlns="http://uniprot.org/uniprot">
    <accession>A9BLE1</accession>
    <name>A9BLE1_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Daci_3794</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="2" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX36426.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_3794"/>
    <dbReference type="PRIDE" id="A9BLE1"/>
    <dbReference type="EnsemblBacteria" id="ABX36426">
        <property type="protein sequence ID" value="ABX36426"/>
        <property type="gene ID" value="Daci_3794"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_3794"/>
    <dbReference type="eggNOG" id="COG3826">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_073550_0_0_4"/>
    <dbReference type="OMA" id="HAISRVH"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018655">
        <property type="entry name" value="DUF2086"/>
    </dbReference>
    <dbReference type="Pfam" id="PF09859">
        <property type="entry name" value="Oxygenase-NA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ABX36426.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="237" mass="26233" checksum="07740ECC4B3035D0" modified="2008-01-15" version="1">MVGRSEMDRLNSQDRFARLDWARIAAELDAEGHALLPQLLTADESRALAREAAAVPGLPPCMQAWRPVLYGHLLALANRWREHMGMQPGLPGCFEDFMRAGRPAGQTQPQPQPQPHLLRVPQAGHAPLRSYSEGAAVFPLQLVLLLSRPGQDFEGGEFVMTEQRPRMQSRPMVLPLGLGDAAIIATGPRPVRGAAGFYRVHLRHAISRVHRGEWLGLELLLHDAPSAPKALQTDRWL</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="48" xmlns="http://uniprot.org/uniprot">
    <accession>A9BLM2</accession>
    <name>A9BLM2_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Daci_3876</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="2" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX36507.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_3876"/>
    <dbReference type="PRIDE" id="A9BLM2"/>
    <dbReference type="EnsemblBacteria" id="ABX36507">
        <property type="protein sequence ID" value="ABX36507"/>
        <property type="gene ID" value="Daci_3876"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_3876"/>
    <dbReference type="eggNOG" id="ENOG5033YKC">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_140899_0_0_4"/>
    <dbReference type="OMA" id="VWTVAFE"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ABX36507.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="108" mass="12122" checksum="41767342D1DFC4CC" modified="2008-01-15" version="1">MSFEIDAKGNGIAPKSEGAFIFSQLEIRISGDDGRNGIYSRHLPYGLSANDSRDAVEKKLGQLKRRMPEIDNYFLDGVVWTVAFEEDKLEFFQLGVPTNGKRKHGLCL</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="48" xmlns="http://uniprot.org/uniprot">
    <accession>A9BLN8</accession>
    <name>A9BLN8_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Zinc metalloproteinase Mpr protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_3892</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX36523.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_3892"/>
    <dbReference type="PRIDE" id="A9BLN8"/>
    <dbReference type="EnsemblBacteria" id="ABX36523">
        <property type="protein sequence ID" value="ABX36523"/>
        <property type="gene ID" value="Daci_3892"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_3892"/>
    <dbReference type="eggNOG" id="COG3091">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_068645_0_0_4"/>
    <dbReference type="OMA" id="HLWQHHF"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051716">
        <property type="term" value="P:cellular response to stimulus"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006640">
        <property type="entry name" value="SprT-like_domain"/>
    </dbReference>
    <dbReference type="Pfam" id="PF10263">
        <property type="entry name" value="SprT-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="SprT-like" evidence="1">
        <location>
            <begin position="37"/>
            <end position="135"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF10263"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX36523.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="284" mass="30853" checksum="DAD88B6C640278AD" modified="2008-01-15" version="1">MAVLHNPAMLSATASSLASSLSSARAVPTRETYSELQQAYEHFNQRLFDDALPHCLITLQREKRTCGYFSAARFASLDGSTTDEIALNPAYFAAVPIIETLQTLVHEMTHLWQHHFGKPGRARYHNEEWADKLESLGLMPSSTGRPGGRRTGDMMADYAMAGGPFLAACEQLLTTRFQLSWYDRFPAIEHVVTGQWSMATQIQGMQGTQPPMSSVPALAEAVRPVGTSVAVPGSTTGETMVQPVNKSLRVKYRCGGCAAPVNVWGKPGLNLICGDCGKGFTAQD</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2021-06-02" version="56" xmlns="http://uniprot.org/uniprot">
    <accession>A9BLW9</accession>
    <name>A9BLW9_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Dimethylmenaquinone methyltransferase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Daci_4277</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="2" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX36908.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012206080.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_4277"/>
    <dbReference type="EnsemblBacteria" id="ABX36908">
        <property type="protein sequence ID" value="ABX36908"/>
        <property type="gene ID" value="Daci_4277"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_4277"/>
    <dbReference type="eggNOG" id="COG0684">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_072626_3_2_4"/>
    <dbReference type="OMA" id="MKLCGPA"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008168">
        <property type="term" value="F:methyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0032259">
        <property type="term" value="P:methylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd16841">
        <property type="entry name" value="RraA_family"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005493">
        <property type="entry name" value="RraA/RraA-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036704">
        <property type="entry name" value="RraA/RraA-like_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03737">
        <property type="entry name" value="RraA-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF89562">
        <property type="entry name" value="SSF89562"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0489">Methyltransferase</keyword>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0808">Transferase</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ABX36908.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="228" mass="23685" checksum="609756A96659966E" modified="2008-01-15" version="1">MSQLPEIIRDIERVDAQVVQRAAGFQAAILADVAGRRGTMHARVAPVHQGMKVAGPAFTVEVRPGDNLMIHAAIALARPGDVLVIDGKGDQTAALMGTLMLSACKKLGLAGVIVDGAIRDRLELLELDFPVFSAGFNPAGPTKFVPGRINHTISAGGTTVHPGDLVVGDADGVVVIERAKAPAMLELAVKKVADEAARIEAIARGDTASKWLPAALRAAGVLKEGESL</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="97" xmlns="http://uniprot.org/uniprot">
    <accession>A9BLY5</accession>
    <name>A9BLY5_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="9">Two component, sigma54 specific, transcriptional regulator, Fis family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="9" type="ordered locus">Daci_4293</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="9 10" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="10" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX36924.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012206096.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_4293"/>
    <dbReference type="PRIDE" id="A9BLY5"/>
    <dbReference type="EnsemblBacteria" id="ABX36924">
        <property type="protein sequence ID" value="ABX36924"/>
        <property type="gene ID" value="Daci_4293"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_4293"/>
    <dbReference type="eggNOG" id="COG2204">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_000445_0_5_4"/>
    <dbReference type="OMA" id="DDQRNMR"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043565">
        <property type="term" value="F:sequence-specific DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000160">
        <property type="term" value="P:phosphorelay signal transduction system"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006355">
        <property type="term" value="P:regulation of transcription, DNA-templated"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003593">
        <property type="entry name" value="AAA+_ATPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011006">
        <property type="entry name" value="CheY-like_superfamily"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009057">
        <property type="entry name" value="Homeobox-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002197">
        <property type="entry name" value="HTH_Fis"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001789">
        <property type="entry name" value="Sig_transdc_resp-reg_receiver"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002078">
        <property type="entry name" value="Sigma_54_int"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025662">
        <property type="entry name" value="Sigma_54_int_dom_ATP-bd_1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025943">
        <property type="entry name" value="Sigma_54_int_dom_ATP-bd_2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025944">
        <property type="entry name" value="Sigma_54_int_dom_CS"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02954">
        <property type="entry name" value="HTH_8"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00072">
        <property type="entry name" value="Response_reg"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00158">
        <property type="entry name" value="Sigma54_activat"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR01590">
        <property type="entry name" value="HTHFIS"/>
    </dbReference>
    <dbReference type="SMART" id="SM00382">
        <property type="entry name" value="AAA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00448">
        <property type="entry name" value="REC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46689">
        <property type="entry name" value="SSF46689"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52172">
        <property type="entry name" value="SSF52172"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50110">
        <property type="entry name" value="RESPONSE_REGULATORY"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00675">
        <property type="entry name" value="SIGMA54_INTERACT_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00676">
        <property type="entry name" value="SIGMA54_INTERACT_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00688">
        <property type="entry name" value="SIGMA54_INTERACT_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50045">
        <property type="entry name" value="SIGMA54_INTERACT_4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="4" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="1" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="6" id="KW-0597">Phosphoprotein</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="5" id="KW-0804">Transcription</keyword>
    <keyword evidence="3" id="KW-0805">Transcription regulation</keyword>
    <feature type="domain" description="Response regulatory" evidence="8">
        <location>
            <begin position="6"/>
            <end position="120"/>
        </location>
    </feature>
    <feature type="domain" description="Sigma-54 factor interaction" evidence="7">
        <location>
            <begin position="146"/>
            <end position="375"/>
        </location>
    </feature>
    <feature type="modified residue" description="4-aspartylphosphate" evidence="6">
        <location>
            <position position="55"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023015"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023163"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00169"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="PROSITE" id="PS50045"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="PROSITE" id="PS50110"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="ABX36924.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="448" mass="49192" checksum="20D4BEC6999BE249" modified="2008-01-15" version="1">MTDALKVLIIEDDPDIVLGCEQALQLEGIACESVGSAEQARRRLSRDFAGIVVSDIRLPRMDGMAFLRELVAMDAELPVVLITGHGDISMAVQAMKDGAQDFIQKPFAPETLVGAVRRALERRRLVLEVRALRQQLDQRDSLEHRLIGRAPNMRQLRQMLTGLAQSAADVLIQGETGTGKELVARCLHEASARRDGNFVAVNCGGLPDTLFDSEMFGSEAGAYTGAGKKRIGKLEHASGGTLFLDEIESMPLPMQIKLLRVLQERVLERLGSNTLIPIDCRVIAATKVDLLELSRQGLFRADLYYRLNVATVSLPPLRERREDVPLLFEHFALQGAARHQRPVPELTTARVQQLLGYDWPGNVRELRNVAERTVLGIETGSPPFGQPAGTTAQDAVPRPLSAAVEAFERALIADALRRHAGSLARTAEALSMPKTTLHDKIRKYGLDG</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="63" xmlns="http://uniprot.org/uniprot">
    <accession>A9BMA8</accession>
    <name>A9BMA8_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="3">AMP-dependent synthetase and ligase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Daci_4824</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="4" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX37453.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012206623.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_4824"/>
    <dbReference type="PRIDE" id="A9BMA8"/>
    <dbReference type="EnsemblBacteria" id="ABX37453">
        <property type="protein sequence ID" value="ABX37453"/>
        <property type="gene ID" value="Daci_4824"/>
    </dbReference>
    <dbReference type="GeneID" id="60689162"/>
    <dbReference type="KEGG" id="dac:Daci_4824"/>
    <dbReference type="eggNOG" id="COG0318">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_000022_59_5_4"/>
    <dbReference type="OMA" id="LWSHTMA"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016874">
        <property type="term" value="F:ligase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.300.30">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.12780">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025110">
        <property type="entry name" value="AMP-bd_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045851">
        <property type="entry name" value="AMP-bd_C_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020845">
        <property type="entry name" value="AMP-binding_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000873">
        <property type="entry name" value="AMP-dep_Synth/Lig"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR042099">
        <property type="entry name" value="ANL_N_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00501">
        <property type="entry name" value="AMP-binding"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13193">
        <property type="entry name" value="AMP-binding_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00455">
        <property type="entry name" value="AMP_BINDING"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-0436">Ligase</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="AMP-binding" evidence="1">
        <location>
            <begin position="22"/>
            <end position="449"/>
        </location>
    </feature>
    <feature type="domain" description="AMP-binding_C" evidence="2">
        <location>
            <begin position="458"/>
            <end position="533"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF00501"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF13193"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ABX37453.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="551" mass="60683" checksum="A3B37872E7E81E85" modified="2008-01-15" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="87" xmlns="http://uniprot.org/uniprot">
    <accession>A9BMD6</accession>
    <name>A9BMD6_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="2 3">Methionine aminopeptidase</fullName>
            <shortName evidence="2">MAP</shortName>
            <shortName evidence="2">MetAP</shortName>
            <ecNumber evidence="2 3">3.4.11.18</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="2">Peptidase M</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="2" type="primary">map</name>
        <name evidence="5" type="ordered locus">Daci_4852</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="6" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="1 2">Removes the N-terminal methionine from nascent proteins. The N-terminal methionine is often cleaved when the second residue in the primary sequence is small and uncharged (Met-Ala-, Cys, Gly, Pro, Ser, Thr, or Val). Requires deformylation of the N(alpha)-formylated initiator methionine before it can be hydrolyzed.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="2 3">
            <text>Release of N-terminal amino acids, preferentially methionine, from peptides and arylamides.</text>
            <dbReference type="EC" id="3.4.11.18"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="2 3">
            <name>Co(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:48828"/>
        </cofactor>
        <cofactor evidence="2 3">
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </cofactor>
        <cofactor evidence="2 3">
            <name>Mn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29035"/>
        </cofactor>
        <cofactor evidence="2 3">
            <name>Fe(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29033"/>
        </cofactor>
        <text evidence="2 3">Binds 2 divalent metal cations per subunit. Has a high-affinity and a low affinity metal-binding site. The true nature of the physiological cofactor is under debate. The enzyme is active with cobalt, zinc, manganese or divalent iron ions. Most likely, methionine aminopeptidases function as mononuclear Fe(2+)-metalloproteases under physiological conditions, and the catalytically relevant metal-binding site has been assigned to the histidine-containing high-affinity site.</text>
    </comment>
    <comment type="subunit">
        <text evidence="2">Monomer.</text>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the peptidase M24A family. Methionine aminopeptidase type 1 subfamily.</text>
    </comment>
    <dbReference type="EC" id="3.4.11.18" evidence="2 3"/>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX37481.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012206651.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_4852"/>
    <dbReference type="MEROPS" id="M24.001"/>
    <dbReference type="PRIDE" id="A9BMD6"/>
    <dbReference type="EnsemblBacteria" id="ABX37481">
        <property type="protein sequence ID" value="ABX37481"/>
        <property type="gene ID" value="Daci_4852"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_4852"/>
    <dbReference type="eggNOG" id="COG0024">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_015857_0_1_4"/>
    <dbReference type="OMA" id="GDHAYTF"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0070006">
        <property type="term" value="F:metalloaminopeptidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046914">
        <property type="term" value="F:transition metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="GO" id="GO:0070084">
        <property type="term" value="P:protein initiator methionine removal"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006508">
        <property type="term" value="P:proteolysis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd01086">
        <property type="entry name" value="MetAP1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.230.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01974">
        <property type="entry name" value="MetAP_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036005">
        <property type="entry name" value="Creatinase/aminopeptidase-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000994">
        <property type="entry name" value="Pept_M24"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001714">
        <property type="entry name" value="Pept_M24_MAP"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002467">
        <property type="entry name" value="Pept_M24A_MAP1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00557">
        <property type="entry name" value="Peptidase_M24"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00599">
        <property type="entry name" value="MAPEPTIDASE"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55920">
        <property type="entry name" value="SSF55920"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00500">
        <property type="entry name" value="met_pdase_I"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00680">
        <property type="entry name" value="MAP_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2 3 5" id="KW-0031">Aminopeptidase</keyword>
    <keyword evidence="2 5" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="2 3" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="2 3" id="KW-0645">Protease</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Peptidase_M24" evidence="4">
        <location>
            <begin position="13"/>
            <end position="246"/>
        </location>
    </feature>
    <feature type="binding site" evidence="2">
        <location>
            <position position="83"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="2">
        <location>
            <position position="100"/>
        </location>
        <ligand>
            <name>a divalent metal cation</name>
            <dbReference type="ChEBI" id="CHEBI:60240"/>
            <label>1</label>
        </ligand>
    </feature>
    <feature type="binding site" evidence="2">
        <location>
            <position position="112"/>
        </location>
    </feature>
    <feature type="binding site" evidence="2">
        <location>
            <position position="175"/>
        </location>
        <ligand>
            <name>a divalent metal cation</name>
            <dbReference type="ChEBI" id="CHEBI:60240"/>
            <label>2</label>
            <note>catalytic</note>
        </ligand>
    </feature>
    <feature type="binding site" evidence="2">
        <location>
            <position position="182"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="2">
        <location>
            <position position="208"/>
        </location>
        <ligand>
            <name>a divalent metal cation</name>
            <dbReference type="ChEBI" id="CHEBI:60240"/>
            <label>2</label>
            <note>catalytic</note>
        </ligand>
    </feature>
    <feature type="binding site" evidence="2">
        <location>
            <position position="240"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00002521"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01974"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="RuleBase" id="RU003653"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="Pfam" id="PF00557"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="ABX37481.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="271" mass="29294" checksum="5DCF4B1554D9639E" modified="2008-01-15" version="1">MSITIKSAEDIAAMRVACRLASEVLDYITPHIKPGITTAEIDRLGAECMAQQGTVSATIGYQPPGYPPYPGHLCTSVNHVVCHGIPNDKPLKKGDIVNVDVTVITKDGWYGDNSRMFMIGECSIAAKRLSALTFDAMWLGIQQVRPGATLGDIGNAIQTFAEGHGLSVVREFCGHGIGQKFHEEPQILHYGRPGTGTVLEEGMVFTVEPMLNLGKREIKELGKDGWTIVTKDHSLSAQWEHTLVVTRTGYEVMTLSAGSPALPPFVTTTSC</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="48" xmlns="http://uniprot.org/uniprot">
    <accession>A9BMZ0</accession>
    <name>A9BMZ0_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_5056</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX37685.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012206855.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_5056"/>
    <dbReference type="PRIDE" id="A9BMZ0"/>
    <dbReference type="EnsemblBacteria" id="ABX37685">
        <property type="protein sequence ID" value="ABX37685"/>
        <property type="gene ID" value="Daci_5056"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_5056"/>
    <dbReference type="eggNOG" id="COG3656">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_129911_0_0_4"/>
    <dbReference type="OMA" id="EGTKWLK"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014469">
        <property type="entry name" value="DUF2271"/>
    </dbReference>
    <dbReference type="Pfam" id="PF10029">
        <property type="entry name" value="DUF2271"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF014995">
        <property type="entry name" value="UCP014995"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="1">
        <location>
            <begin position="1"/>
            <end position="24"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5002735627" evidence="1">
        <location>
            <begin position="25"/>
            <end position="175"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX37685.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="175" mass="19332" checksum="CA49291E391577AC" modified="2008-01-15" version="1">MNPHFSLRYTMALGACLGAVPVFAAGLNVGVEIPRLDVAEYHRPYVAVWIERADASVASTLSVWYDVKMRNAEGTKWLKDMRQWWRRTGRDLTLPIDGVTSPTRPVGKHQLSFTEGANPFAKLPPGEYKLVVEAAREVGGREVVTVPFKWPAAKAEQLSAKGSSELGEISLELKP</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="76" xmlns="http://uniprot.org/uniprot">
    <accession>A9BN75</accession>
    <name>A9BN75_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="3">DEAD/DEAH box helicase domain protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Daci_5141</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="4" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX37770.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012206940.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_5141"/>
    <dbReference type="PRIDE" id="A9BN75"/>
    <dbReference type="EnsemblBacteria" id="ABX37770">
        <property type="protein sequence ID" value="ABX37770"/>
        <property type="gene ID" value="Daci_5141"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_5141"/>
    <dbReference type="eggNOG" id="COG1201">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_002025_2_1_4"/>
    <dbReference type="OMA" id="YHQTMST"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004386">
        <property type="term" value="F:helicase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003676">
        <property type="term" value="F:nucleic acid binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011545">
        <property type="entry name" value="DEAD/DEAH_box_helicase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014001">
        <property type="entry name" value="Helicase_ATP-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001650">
        <property type="entry name" value="Helicase_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00270">
        <property type="entry name" value="DEAD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00271">
        <property type="entry name" value="Helicase_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00487">
        <property type="entry name" value="DEXDc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00490">
        <property type="entry name" value="HELICc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51192">
        <property type="entry name" value="HELICASE_ATP_BIND_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51194">
        <property type="entry name" value="HELICASE_CTER"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="3" id="KW-0347">Helicase</keyword>
    <keyword evidence="3" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="3" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Helicase ATP-binding" evidence="1">
        <location>
            <begin position="36"/>
            <end position="214"/>
        </location>
    </feature>
    <feature type="domain" description="Helicase C-terminal" evidence="2">
        <location>
            <begin position="259"/>
            <end position="406"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS51192"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS51194"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ABX37770.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="740" mass="81455" checksum="CEC33E3ABEFD4240" modified="2008-01-15" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="67" xmlns="http://uniprot.org/uniprot">
    <accession>A9BNF6</accession>
    <name>A9BNF6_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">Thioredoxin peroxidase</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="6" type="ordered locus">Daci_5222</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="7" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX37851.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012207021.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="SMR" id="A9BNF6"/>
    <dbReference type="STRING" id="398578.Daci_5222"/>
    <dbReference type="PRIDE" id="A9BNF6"/>
    <dbReference type="EnsemblBacteria" id="ABX37851">
        <property type="protein sequence ID" value="ABX37851"/>
        <property type="gene ID" value="Daci_5222"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_5222"/>
    <dbReference type="eggNOG" id="COG1225">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_042529_14_1_4"/>
    <dbReference type="OMA" id="RVVVYFY"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004601">
        <property type="term" value="F:peroxidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000866">
        <property type="entry name" value="AhpC/TSA"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR024706">
        <property type="entry name" value="Peroxiredoxin_AhpC-typ"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036249">
        <property type="entry name" value="Thioredoxin-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013766">
        <property type="entry name" value="Thioredoxin_domain"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00578">
        <property type="entry name" value="AhpC-TSA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF000239">
        <property type="entry name" value="AHPC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52833">
        <property type="entry name" value="SSF52833"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51352">
        <property type="entry name" value="THIOREDOXIN_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="1" id="KW-0575">Peroxidase</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Thioredoxin" evidence="5">
        <location>
            <begin position="3"/>
            <end position="156"/>
        </location>
    </feature>
    <feature type="active site" description="Cysteine sulfenic acid (-SOH) intermediate" evidence="4">
        <location>
            <position position="45"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022559"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023002"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00032824"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="PIRSR" id="PIRSR000239-1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="PROSITE" id="PS51352"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="ABX37851.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="161" mass="17953" checksum="776932A5E92BB6B6" modified="2008-01-15" version="1">MAIVVNKPLPEFEANATGGIKVTNTSHTGQILILYFYPKDNTPGCTTEAMQFRDKYKDFVKAGATVFGVSRDNMKSHDDFKEKLELPFELIADTEEKMCHMFGVVKNKIMYGKKVKGIERSTFLVGADGLLVQEWRGLKVPGHVDEVLKAVKTLKALKQAA</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="78" xmlns="http://uniprot.org/uniprot">
    <accession>A9BNH6</accession>
    <name>A9BNH6_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="3 4">N-(5'-phosphoribosyl)anthranilate isomerase</fullName>
            <shortName evidence="4">PRAI</shortName>
            <ecNumber evidence="2 4">5.3.1.24</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="4" type="primary">trpF</name>
        <name evidence="6" type="ordered locus">Daci_5242</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="7" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="4">
            <text>N-(5-phospho-beta-D-ribosyl)anthranilate = 1-(2-carboxyphenylamino)-1-deoxy-D-ribulose 5-phosphate</text>
            <dbReference type="Rhea" id="RHEA:21540"/>
            <dbReference type="ChEBI" id="CHEBI:18277"/>
            <dbReference type="ChEBI" id="CHEBI:58613"/>
            <dbReference type="EC" id="5.3.1.24"/>
        </reaction>
    </comment>
    <comment type="pathway">
        <text evidence="1 4">Amino-acid biosynthesis; L-tryptophan biosynthesis; L-tryptophan from chorismate: step 3/5.</text>
    </comment>
    <comment type="similarity">
        <text evidence="4">Belongs to the TrpF family.</text>
    </comment>
    <dbReference type="EC" id="5.3.1.24" evidence="2 4"/>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX37871.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_5242"/>
    <dbReference type="PRIDE" id="A9BNH6"/>
    <dbReference type="EnsemblBacteria" id="ABX37871">
        <property type="protein sequence ID" value="ABX37871"/>
        <property type="gene ID" value="Daci_5242"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_5242"/>
    <dbReference type="eggNOG" id="COG0135">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_076364_2_0_4"/>
    <dbReference type="OMA" id="FYAKSPR"/>
    <dbReference type="UniPathway" id="UPA00035">
        <property type="reaction ID" value="UER00042"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004640">
        <property type="term" value="F:phosphoribosylanthranilate isomerase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000162">
        <property type="term" value="P:tryptophan biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd00405">
        <property type="entry name" value="PRAI"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.20.20.70">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00135">
        <property type="entry name" value="PRAI"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013785">
        <property type="entry name" value="Aldolase_TIM"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001240">
        <property type="entry name" value="PRAI_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011060">
        <property type="entry name" value="RibuloseP-bd_barrel"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR044643">
        <property type="entry name" value="TrpF_fam"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR42894">
        <property type="entry name" value="PTHR42894"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00697">
        <property type="entry name" value="PRAI"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51366">
        <property type="entry name" value="SSF51366"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-0028">Amino-acid biosynthesis</keyword>
    <keyword evidence="4" id="KW-0057">Aromatic amino acid biosynthesis</keyword>
    <keyword evidence="4 6" id="KW-0413">Isomerase</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4" id="KW-0822">Tryptophan biosynthesis</keyword>
    <feature type="domain" description="PRAI" evidence="5">
        <location>
            <begin position="3"/>
            <end position="203"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004664"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00012572"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022272"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00135"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="Pfam" id="PF00697"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="ABX37871.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="224" mass="23224" checksum="69BF27698FB936E7" modified="2008-01-15" version="1">MDAAVAAGTDAVGFVLYAPSPRAVTVQRAAELARRLPPFVTPVLLFVNESAANVMAACAAIPGACVQFHGDESPEDCLAATSGGTRAFLRAARIPLGPDAARFDLVEYAQRYSKAQAILLDAHVDGYGGGGKAFNWSLLPPNVASHLVLSGGLTPANVTDGILQVRPRGLSLAVDVSSGVEADGPDGKPLRGIKDAGKIHRFIAAVRAADDQLLQTSHVRIPVP</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="43" xmlns="http://uniprot.org/uniprot">
    <accession>A9BNI3</accession>
    <name>A9BNI3_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Daci_5249</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="2" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX37878.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012207048.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_5249"/>
    <dbReference type="PRIDE" id="A9BNI3"/>
    <dbReference type="EnsemblBacteria" id="ABX37878">
        <property type="protein sequence ID" value="ABX37878"/>
        <property type="gene ID" value="Daci_5249"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_5249"/>
    <dbReference type="eggNOG" id="ENOG502Z9PC">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_854941_0_0_4"/>
    <dbReference type="OMA" id="SGKPWRM"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ABX37878.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="338" mass="38320" checksum="7FB783B441D7B077" modified="2008-01-15" version="1">MHIPTYWAQARLRHESRPTHGITVQRWGWSDTSQEAAQAHAQERAGQALEAARNAALPKGEPRMEWKNEYALDGFTTPIREEVLQRRDGTVMTRNSYGAHCLNTERVAIADIDLPEPPSAVRFPVVTLLLLASVAIWLARLAPHKNNSRMVATALVVLLLFLAMRRVQRWWEARQARQRAATDSPAARAMERVQTFHQSHPDWGLRVYETPKGLRVIVTHADFASDDPAVGRLFDALQVDPLYALLCERQQCFRARVSGKPWRMGLTGLSTSLRSWPVPEDRQEERRQWALAYDSKAQGFAACRLLQQLGNPRICPAADAFVQWHDEASRARTDLPLA</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="64" xmlns="http://uniprot.org/uniprot">
    <accession>A9BNL2</accession>
    <name>A9BNL2_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Peptidase S49</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ordered locus">Daci_5278</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="5" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX37907.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012207076.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_5278"/>
    <dbReference type="PRIDE" id="A9BNL2"/>
    <dbReference type="EnsemblBacteria" id="ABX37907">
        <property type="protein sequence ID" value="ABX37907"/>
        <property type="gene ID" value="Daci_5278"/>
    </dbReference>
    <dbReference type="GeneID" id="60689622"/>
    <dbReference type="KEGG" id="dac:Daci_5278"/>
    <dbReference type="eggNOG" id="COG0616">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_046540_1_1_4"/>
    <dbReference type="OMA" id="YVYDEIR"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008233">
        <property type="term" value="F:peptidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006508">
        <property type="term" value="P:proteolysis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd07023">
        <property type="entry name" value="S49_Sppa_N_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029045">
        <property type="entry name" value="ClpP/crotonase-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002142">
        <property type="entry name" value="Peptidase_S49"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01343">
        <property type="entry name" value="Peptidase_S49"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52096">
        <property type="entry name" value="SSF52096"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0472">Membrane</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="2" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="67"/>
            <end position="85"/>
        </location>
    </feature>
    <feature type="domain" description="Peptidase_S49" evidence="3">
        <location>
            <begin position="164"/>
            <end position="310"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="22"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF01343"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="ABX37907.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="348" mass="37220" checksum="0062F0F548A7AAC7" modified="2008-01-15" version="1">MTSPIPPENPGSASHPSPGADLWARATPATAAADARTAASSGWEREVLEKLVFATINEQRASRRWRLFGRLLWTALILVVLWVLFAKDTATTTSSSPHTAVVEVKGEIAAGADASAEFVVAAMRSAFEDSGSRAVVLLINSPGGSPVQAGIINDEIVRLKGKYDKPLYAVVEETCASAAYYIAAAADEIFVDKASIVGSIGVLMDGFGFTGAMEKLGVERRLLTAGENKGFLDPFSPMSEGQREHAHKMLGQIHSQFINVVKAGRGDRLHETPETFSGLFWTGQQAVEMGLADKLGSLDYVAREVVKAEEVVDYTRRDNVAERLAKRFGAAFGGGAVQALRSSLPALR</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="46" xmlns="http://uniprot.org/uniprot">
    <accession>A9BNY9</accession>
    <name>A9BNY9_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Daci_5405</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="2" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX38034.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012207203.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_5405"/>
    <dbReference type="PRIDE" id="A9BNY9"/>
    <dbReference type="EnsemblBacteria" id="ABX38034">
        <property type="protein sequence ID" value="ABX38034"/>
        <property type="gene ID" value="Daci_5405"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_5405"/>
    <dbReference type="eggNOG" id="COG4255">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_037503_1_1_4"/>
    <dbReference type="OMA" id="NAFWVHG"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ABX38034.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="332" mass="36002" checksum="D92AC1AB19ADF738" modified="2008-01-15" version="1">MLLTAPLVSSTQAPLEETTEWIIPYAGGPSSDAADDAAVTAVWGGLELPHLQSLLALMQPAPAQTGTEMDFSPPHERALARSLGLPDAPGLIAWAAWQAGETAQACAYVTPCHWHIGADQVHQSDPATTPLSDEESRQLLALLAPWFADDGIVLEYQQPQRWLARGALFDDLATASMDRVIGRDVRPWLPDAQQARALHRLQSEVQMLLYTHVFNDARAARGQVPINAFWVHGAGRLQPGTATGAKAAVQCLDDLHAAALQGNPAAWREAWKALDAGLIARLLERVRAGHPLTLTLCGERHAIAWSSRPPRWLDRLTGLFGPRALPDLGRML</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="67" xmlns="http://uniprot.org/uniprot">
    <accession>A9BP62</accession>
    <name>A9BP62_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="6">Glutaredoxin</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="9" type="ordered locus">Daci_5478</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="9 10" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="10" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1 6">Belongs to the glutaredoxin family. Monothiol subfamily.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX38107.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012207276.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_5478"/>
    <dbReference type="PRIDE" id="A9BP62"/>
    <dbReference type="EnsemblBacteria" id="ABX38107">
        <property type="protein sequence ID" value="ABX38107"/>
        <property type="gene ID" value="Daci_5478"/>
    </dbReference>
    <dbReference type="GeneID" id="60689830"/>
    <dbReference type="KEGG" id="dac:Daci_5478"/>
    <dbReference type="eggNOG" id="COG0278">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_026126_2_1_4"/>
    <dbReference type="OMA" id="KGTKLMP"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051537">
        <property type="term" value="F:2 iron, 2 sulfur cluster binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0097573">
        <property type="term" value="F:glutathione oxidoreductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd03028">
        <property type="entry name" value="GRX_PICOT_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002109">
        <property type="entry name" value="Glutaredoxin"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR033658">
        <property type="entry name" value="GRX_PICOT-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014434">
        <property type="entry name" value="Monothiol_GRX"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004480">
        <property type="entry name" value="Monothiol_GRX-rel"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036249">
        <property type="entry name" value="Thioredoxin-like_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10293">
        <property type="entry name" value="PTHR10293"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00462">
        <property type="entry name" value="Glutaredoxin"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF005894">
        <property type="entry name" value="Monothiol_GRX"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52833">
        <property type="entry name" value="SSF52833"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00365">
        <property type="entry name" value="TIGR00365"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2 7" id="KW-0001">2Fe-2S</keyword>
    <keyword evidence="4 7" id="KW-0408">Iron</keyword>
    <keyword evidence="5 7" id="KW-0411">Iron-sulfur</keyword>
    <keyword evidence="3 7" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Glutaredoxin" evidence="8">
        <location>
            <begin position="17"/>
            <end position="84"/>
        </location>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <position position="30"/>
        </location>
        <ligand>
            <name>[2Fe-2S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:190135"/>
            <note>ligand shared between dimeric partners</note>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00009630"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022714"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023004"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023014"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="PIRNR" id="PIRNR005894"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="PIRSR" id="PIRSR005894-2"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="Pfam" id="PF00462"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="ABX38107.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="107" mass="11937" checksum="DCB7888B994FDEA2" modified="2008-01-15" version="1">MSDTQQRIDQLVKSNNILLFMKGSASFPMCGFSGRAIQILKACGVETKDISTVNVLEDQEIRQGIKDYSNWPTIPQLYVQGEFIGGSDIMMEMYESGELQQLLAPKA</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-05-25" version="70" xmlns="http://uniprot.org/uniprot">
    <accession>A9BPK0</accession>
    <name>A9BPK0_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="7">Urea ABC transporter, permease protein UrtB</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ordered locus">Daci_0221</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="8" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX32867.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012202160.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_0221"/>
    <dbReference type="EnsemblBacteria" id="ABX32867">
        <property type="protein sequence ID" value="ABX32867"/>
        <property type="gene ID" value="Daci_0221"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_0221"/>
    <dbReference type="eggNOG" id="COG0559">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_039929_2_2_4"/>
    <dbReference type="OMA" id="SIFVMQG"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0022857">
        <property type="term" value="F:transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001851">
        <property type="entry name" value="ABC_transp_permease"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017779">
        <property type="entry name" value="ABC_UrtB_bac"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02653">
        <property type="entry name" value="BPD_transp_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR03409">
        <property type="entry name" value="urea_trans_UrtB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="5 6" id="KW-0472">Membrane</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 6" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="4 6" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="12"/>
            <end position="36"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="48"/>
            <end position="67"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="73"/>
            <end position="97"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="109"/>
            <end position="127"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="152"/>
            <end position="174"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="206"/>
            <end position="225"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="237"/>
            <end position="259"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="271"/>
            <end position="292"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="ABX32867.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="304" mass="32353" checksum="520D02B31EE9F50F" modified="2008-01-15" version="1">MSFSDMMNIGLMQGFAGLSLFAVLLLMGLGLAIIFGQMGVINMAHGEFMTIGAYTIYLGSTLTAQHAPELMPYYFPLAIVAAFLFAFAAGWLVEWGLIRHLYKRPLDTLLATWGVSLALQQCFRTFIGPKEVSPTLPDWLMGSWAPAEGLDIPINGLFVLALTAVVTAGVLIALHKSRWGLRVRATVSNRVMANAIGIDTKKTDRLTFAIGCGIAGVAGAAFTTIGSTGPTSGSLYIVDAFLVVTFGGAASLLGTVVSAFGIAQTQSITEFFLAGSMAKVITLSLIVFILMLRPQGLFASKVRR</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="72" xmlns="http://uniprot.org/uniprot">
    <accession>A9BPS0</accession>
    <name>A9BPS0_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="2 5">50S ribosomal protein L23</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="5" type="primary">rplW</name>
        <name evidence="6" type="ordered locus">Daci_0393</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="7" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="5">One of the early assembly proteins it binds 23S rRNA. One of the proteins that surrounds the polypeptide exit tunnel on the outside of the ribosome. Forms the main docking site for trigger factor binding to the ribosome.</text>
    </comment>
    <comment type="subunit">
        <text evidence="5">Part of the 50S ribosomal subunit. Contacts protein L29, and trigger factor when it is bound to the ribosome.</text>
    </comment>
    <comment type="similarity">
        <text evidence="1 5">Belongs to the universal ribosomal protein uL23 family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX33039.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012202331.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_0393"/>
    <dbReference type="PRIDE" id="A9BPS0"/>
    <dbReference type="EnsemblBacteria" id="ABX33039">
        <property type="protein sequence ID" value="ABX33039"/>
        <property type="gene ID" value="Daci_0393"/>
    </dbReference>
    <dbReference type="GeneID" id="60690800"/>
    <dbReference type="KEGG" id="dac:Daci_0393"/>
    <dbReference type="eggNOG" id="COG0089">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_037562_3_1_4"/>
    <dbReference type="OMA" id="FEVDHRA"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005840">
        <property type="term" value="C:ribosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0019843">
        <property type="term" value="F:rRNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003735">
        <property type="term" value="F:structural constituent of ribosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006412">
        <property type="term" value="P:translation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.70.330">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01369_B">
        <property type="entry name" value="Ribosomal_L23_B"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012677">
        <property type="entry name" value="Nucleotide-bd_a/b_plait_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012678">
        <property type="entry name" value="Ribosomal_L23/L15e_core_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013025">
        <property type="entry name" value="Ribosomal_L25/23"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11620">
        <property type="entry name" value="PTHR11620"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00276">
        <property type="entry name" value="Ribosomal_L23"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54189">
        <property type="entry name" value="SSF54189"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4 5" id="KW-0687">Ribonucleoprotein</keyword>
    <keyword evidence="3 5 6" id="KW-0689">Ribosomal protein</keyword>
    <keyword evidence="5" id="KW-0694">RNA-binding</keyword>
    <keyword evidence="5" id="KW-0699">rRNA-binding</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00006700"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00021203"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022980"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023274"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01369"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="ABX33039.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="104" mass="11375" checksum="145E1FB7B6A43C56" modified="2008-01-15" version="1">MSTLKFDEGRLMQVLVAPIVSEKATMVAEKSNAVTFKVLQSATKHEIKAAVELMFKVEVAGVSVVNIKGKTKRFGKTTGRRDHVRKAYVMLKPGQELNLSGEAA</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="44" xmlns="http://uniprot.org/uniprot">
    <accession>A9BQ28</accession>
    <name>A9BQ28_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Daci_0597</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="2" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX33243.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012202529.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_0597"/>
    <dbReference type="PRIDE" id="A9BQ28"/>
    <dbReference type="EnsemblBacteria" id="ABX33243">
        <property type="protein sequence ID" value="ABX33243"/>
        <property type="gene ID" value="Daci_0597"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_0597"/>
    <dbReference type="eggNOG" id="ENOG503332S">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_1048177_0_0_4"/>
    <dbReference type="OMA" id="GPWLEML"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ABX33243.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="293" mass="31469" checksum="1BA9CF3606E0DD0F" modified="2008-01-15" version="1">MLETFPQLHQGLGLHGQPGAAAPMGLRVLAMLRDTANDPQGLAEQSLLWPVCASLQRLGLPVLVLDASQGESPDAPGLAQLLQQSAWQARTGLHPDPRHSSVAVLPARQGLDLLPQQARQAGMTPMQWLQRHVRGYAIVMLYANADTLASNLAGQAVHPLMVLPEQGTRVLGCYRQLKQLAVHAGLRCLLAPLLPSADDLGVTSYDWRRGQTGARSQAEDAQQLQSQIDALMRCAQRHLGHAPGLLPVRLHHAPDLQRLALQLLNHAGSVLPHGGQDLAAGFAPLPASHAWSH</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="57" xmlns="http://uniprot.org/uniprot">
    <accession>A9BQF3</accession>
    <name>A9BQF3_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Peptidase C26</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Daci_0917</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="2" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX33563.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012202849.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_0917"/>
    <dbReference type="PRIDE" id="A9BQF3"/>
    <dbReference type="EnsemblBacteria" id="ABX33563">
        <property type="protein sequence ID" value="ABX33563"/>
        <property type="gene ID" value="Daci_0917"/>
    </dbReference>
    <dbReference type="GeneID" id="60691049"/>
    <dbReference type="KEGG" id="dac:Daci_0917"/>
    <dbReference type="eggNOG" id="COG2071">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_030756_2_1_4"/>
    <dbReference type="OMA" id="RNGHAYQ"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016811">
        <property type="term" value="F:hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.880">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029062">
        <property type="entry name" value="Class_I_gatase-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011697">
        <property type="entry name" value="Peptidase_C26"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR044668">
        <property type="entry name" value="PuuD-like"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43235">
        <property type="entry name" value="PTHR43235"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07722">
        <property type="entry name" value="Peptidase_C26"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52317">
        <property type="entry name" value="SSF52317"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ABX33563.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="293" mass="32875" checksum="A758BBFEF93A2D1C" modified="2008-01-15" version="1">MSPLASRRLKIGLSACFSHADPQRPLFTGKTLQYVEQSIAHWIMSAGAMVVMVPCPTGETARGDVTLEHYAEWLDGVVMHGGADVWPGSYGEEPMRPEWLGDRVRDLYDLAVVEAFSQAGKPIFGVCRGLQLINVAFGGTLYQDIETQVPGSQLHRNPTEYDRHYHDIAIVPGSRLEALYPTLDRARVNSIHHQGIKDVAPEFDVEAWSLPDRIPEAIFRKPGTLKSYIAATQWHPEFQFRNPDTSTLDDSVLLRDFLAACSRARVSPAVSHSPFQIRNRAARLLRRALLRRH</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="65" xmlns="http://uniprot.org/uniprot">
    <accession>A9BQL6</accession>
    <name>A9BQL6_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Aspartate racemase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_0071</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the aspartate/glutamate racemases family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX32718.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012202011.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_0071"/>
    <dbReference type="PRIDE" id="A9BQL6"/>
    <dbReference type="EnsemblBacteria" id="ABX32718">
        <property type="protein sequence ID" value="ABX32718"/>
        <property type="gene ID" value="Daci_0071"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_0071"/>
    <dbReference type="eggNOG" id="COG1794">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_055360_2_1_4"/>
    <dbReference type="OMA" id="CNTAHFF"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0047661">
        <property type="term" value="F:amino-acid racemase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006807">
        <property type="term" value="P:nitrogen compound metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015942">
        <property type="entry name" value="Asp/Glu/hydantoin_racemase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001920">
        <property type="entry name" value="Asp/Glu_race"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004380">
        <property type="entry name" value="Asp_race"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01177">
        <property type="entry name" value="Asp_Glu_race"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53681">
        <property type="entry name" value="SSF53681"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00035">
        <property type="entry name" value="asp_race"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00007847"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX32718.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="253" mass="26556" checksum="CC021F3C3237AF86" modified="2008-01-15" version="1">MQQQLQPPRAVGILGGMGPAAGADFVRLFVQACTAHLQQQGLPVHDQAYPEHWLVQLPMPDRSAALRADPQSPTGPAQHLLQGVGRMAALGVRSVALACNTAHAWHGQLQALFPQLHVLHIARQAALHLQAGGAQQAIVLATQGTYDSGLYDAALAECGITALQPDAQGRARLMQGIYDGVKQGDMDLAARCFGEVLAPLLQRHGDVPVIMGCTEIPLALPQSPLARGAGLVDPAWILAQALAGDAYGPVAIQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="57" xmlns="http://uniprot.org/uniprot">
    <accession>A9BQN1</accession>
    <name>A9BQN1_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="8">Uracil-xanthine permease</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="8" type="ordered locus">Daci_0086</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="9" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the nucleobase:cation symporter-2 (NCS2) (TC 2.A.40) family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX32733.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012202026.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_0086"/>
    <dbReference type="PRIDE" id="A9BQN1"/>
    <dbReference type="EnsemblBacteria" id="ABX32733">
        <property type="protein sequence ID" value="ABX32733"/>
        <property type="gene ID" value="Daci_0086"/>
    </dbReference>
    <dbReference type="GeneID" id="60690490"/>
    <dbReference type="KEGG" id="dac:Daci_0086"/>
    <dbReference type="eggNOG" id="COG2233">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_017959_1_1_4"/>
    <dbReference type="OMA" id="FGLCPKF"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015205">
        <property type="term" value="F:nucleobase transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006043">
        <property type="entry name" value="NCS2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006042">
        <property type="entry name" value="Xan_ur_permease"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00860">
        <property type="entry name" value="Xan_ur_permease"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00801">
        <property type="entry name" value="ncs2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01116">
        <property type="entry name" value="XANTH_URACIL_PERMASE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="6 7" id="KW-0472">Membrane</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4 7" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="5 7" id="KW-1133">Transmembrane helix</keyword>
    <keyword evidence="3" id="KW-0813">Transport</keyword>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="59"/>
            <end position="75"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="82"/>
            <end position="101"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="107"/>
            <end position="128"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="140"/>
            <end position="160"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="172"/>
            <end position="189"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="196"/>
            <end position="218"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="238"/>
            <end position="260"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="318"/>
            <end position="337"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="349"/>
            <end position="372"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="384"/>
            <end position="400"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="406"/>
            <end position="424"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00008821"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022448"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="ABX32733.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="435" mass="45127" checksum="E6CAE31B30AB8B76" modified="2008-01-15" version="1">MGLFQWTEKSANQLQRGGVIGPDERLPWPQTGLMGIQHVIAMFGSTVLAPILMGFDPNVAVLMSGIGTLIFFLITGGKVPSYLGSSFAFIGVVIAATAYGGKGANGNIGVALGGIIACGAVYALIGLVVQMVGTRWIERFMPPVVTGAVVAVIGLNLAAIPVKNMAANNFESWMQALTFVCVGLVAVFTRGMVQRLLILVGLIAASLLYGLFTNVLGMGKPVDLSGVINAAWFGLPQFHAPVFSGPAMVLIVPVVIILVAENLGHIKAVTAMTGKNLDQYMGRAFIGDGVATMVSGAAGGTGVTTYAENIGVMAATRIYSTAVFFVAAVLAVLLGFSPKFGALIQAIPLPVMGGVSIVVFGLIAVAGAKIWVDNRVDFSQNKNLIVAAITLILGTGDFTLKFGDFALGGIGTATFGAIILYALLDHARDDQPLIH</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="47" xmlns="http://uniprot.org/uniprot">
    <accession>A9BQZ6</accession>
    <name>A9BQZ6_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_0305</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX32951.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012202244.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_0305"/>
    <dbReference type="PRIDE" id="A9BQZ6"/>
    <dbReference type="EnsemblBacteria" id="ABX32951">
        <property type="protein sequence ID" value="ABX32951"/>
        <property type="gene ID" value="Daci_0305"/>
    </dbReference>
    <dbReference type="GeneID" id="60690708"/>
    <dbReference type="KEGG" id="dac:Daci_0305"/>
    <dbReference type="eggNOG" id="COG3619">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_073333_0_0_4"/>
    <dbReference type="OMA" id="MFRHQGK"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010699">
        <property type="entry name" value="DUF1275"/>
    </dbReference>
    <dbReference type="Pfam" id="PF06912">
        <property type="entry name" value="DUF1275"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="23"/>
            <end position="46"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="66"/>
            <end position="89"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="101"/>
            <end position="123"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="129"/>
            <end position="149"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="197"/>
            <end position="216"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="222"/>
            <end position="242"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX32951.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="260" mass="28077" checksum="166744DF2A192FB4" modified="2008-01-15" version="1">MRMRHHLHLLTDRHRTVASNRTLGLLLAFNAGAVNAGGFLLVHSYTSHMTGFVSLLADNLVLGNTALVLSACGALLAFLCGAAATSLLVNWARHHRLRSSYALPLLLEAALMLLFGVLGAAMLAWPTPFAVPLAVLLLSFIMGLQNATVTKMSSSQIRTTHMTGVITDLGMELGRALYWNRHGSPPEHRVHANHVRLRLFAGLLSMFLLGGIAGALGFRHLGFVFVVPLAVVLCLLSLPPLWADRARLPLLLGRRAAPRA</sequence>
</entry>
<entry dataset="Swiss-Prot" created="2009-04-14" modified="2022-08-03" version="84" xmlns="http://uniprot.org/uniprot">
    <accession>A9BR98</accession>
    <name>RPOB_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">DNA-directed RNA polymerase subunit beta</fullName>
            <shortName evidence="1">RNAP subunit beta</shortName>
            <ecNumber evidence="1">2.7.7.6</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="1">RNA polymerase subunit beta</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="1">Transcriptase subunit beta</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="1" type="primary">rpoB</name>
        <name type="ordered locus">Daci_0510</name>
    </gene>
    <organism>
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference key="1">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain>DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="1">DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>a ribonucleoside 5'-triphosphate + RNA(n) = diphosphate + RNA(n+1)</text>
            <dbReference type="Rhea" id="RHEA:21248"/>
            <dbReference type="Rhea" id="RHEA-COMP:14527"/>
            <dbReference type="Rhea" id="RHEA-COMP:17342"/>
            <dbReference type="ChEBI" id="CHEBI:33019"/>
            <dbReference type="ChEBI" id="CHEBI:61557"/>
            <dbReference type="ChEBI" id="CHEBI:140395"/>
            <dbReference type="EC" id="2.7.7.6"/>
        </reaction>
    </comment>
    <comment type="subunit">
        <text evidence="1">The RNAP catalytic core consists of 2 alpha, 1 beta, 1 beta' and 1 omega subunit. When a sigma factor is associated with the core the holoenzyme is formed, which can initiate transcription.</text>
    </comment>
    <comment type="similarity">
        <text evidence="1">Belongs to the RNA polymerase beta chain family.</text>
    </comment>
    <dbReference type="EC" id="2.7.7.6" evidence="1"/>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX33156.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012202442.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A9BR98"/>
    <dbReference type="SMR" id="A9BR98"/>
    <dbReference type="STRING" id="398578.Daci_0510"/>
    <dbReference type="PRIDE" id="A9BR98"/>
    <dbReference type="EnsemblBacteria" id="ABX33156">
        <property type="protein sequence ID" value="ABX33156"/>
        <property type="gene ID" value="Daci_0510"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_0510"/>
    <dbReference type="eggNOG" id="COG0085">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_000524_4_0_4"/>
    <dbReference type="OMA" id="FMTWEGY"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000428">
        <property type="term" value="C:DNA-directed RNA polymerase complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003899">
        <property type="term" value="F:DNA-directed 5'-3' RNA polymerase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0032549">
        <property type="term" value="F:ribonucleoside binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006351">
        <property type="term" value="P:transcription, DNA-templated"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd00653">
        <property type="entry name" value="RNA_pol_B_RPB2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.30.150.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.270.10">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.50.150">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.1110.10">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01321">
        <property type="entry name" value="RNApol_bact_RpoB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR042107">
        <property type="entry name" value="DNA-dir_RNA_pol_bsu_ext_1_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019462">
        <property type="entry name" value="DNA-dir_RNA_pol_bsu_external_1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015712">
        <property type="entry name" value="DNA-dir_RNA_pol_su2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007120">
        <property type="entry name" value="DNA-dir_RNAP_su2_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037033">
        <property type="entry name" value="DNA-dir_RNAP_su2_hyb_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010243">
        <property type="entry name" value="RNA_pol_bsu_bac"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007121">
        <property type="entry name" value="RNA_pol_bsu_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007644">
        <property type="entry name" value="RNA_pol_bsu_protrusion"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007642">
        <property type="entry name" value="RNA_pol_Rpb2_2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037034">
        <property type="entry name" value="RNA_pol_Rpb2_2_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007645">
        <property type="entry name" value="RNA_pol_Rpb2_3"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007641">
        <property type="entry name" value="RNA_pol_Rpb2_7"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014724">
        <property type="entry name" value="RNA_pol_RPB2_OB-fold"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR20856">
        <property type="entry name" value="PTHR20856"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04563">
        <property type="entry name" value="RNA_pol_Rpb2_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04561">
        <property type="entry name" value="RNA_pol_Rpb2_2"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04565">
        <property type="entry name" value="RNA_pol_Rpb2_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF10385">
        <property type="entry name" value="RNA_pol_Rpb2_45"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00562">
        <property type="entry name" value="RNA_pol_Rpb2_6"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04560">
        <property type="entry name" value="RNA_pol_Rpb2_7"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR02013">
        <property type="entry name" value="rpoB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01166">
        <property type="entry name" value="RNA_POL_BETA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword id="KW-0240">DNA-directed RNA polymerase</keyword>
    <keyword id="KW-0548">Nucleotidyltransferase</keyword>
    <keyword id="KW-1185">Reference proteome</keyword>
    <keyword id="KW-0804">Transcription</keyword>
    <keyword id="KW-0808">Transferase</keyword>
    <feature type="chain" id="PRO_1000141683" description="DNA-directed RNA polymerase subunit beta">
        <location>
            <begin position="1"/>
            <end position="1370"/>
        </location>
    </feature>
    <evidence type="ECO:0000255" key="1">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01321"/>
        </source>
    </evidence>
    <sequence length="1370" mass="152887" checksum="E64EF2DE118B3C6D" modified="2008-01-15" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="90" xmlns="http://uniprot.org/uniprot">
    <accession>A9BRA9</accession>
    <name>A9BRA9_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="8">RecBCD enzyme subunit RecB</fullName>
            <ecNumber evidence="8">3.1.11.5</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="8">Exonuclease V subunit RecB</fullName>
            <shortName evidence="8">ExoV subunit RecB</shortName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="8">Helicase/nuclease RecBCD subunit RecB</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="8" type="primary">recB</name>
        <name evidence="12" type="ordered locus">Daci_0521</name>
    </gene>
    <organism evidence="12 13">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="12 13" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="13">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="13" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="13">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="8">A helicase/nuclease that prepares dsDNA breaks (DSB) for recombinational DNA repair. Binds to DSBs and unwinds DNA via a highly rapid and processive ATP-dependent bidirectional helicase activity. Unwinds dsDNA until it encounters a Chi (crossover hotspot instigator) sequence from the 3' direction. Cuts ssDNA a few nucleotides 3' to the Chi site. The properties and activities of the enzyme are changed at Chi. The Chi-altered holoenzyme produces a long 3'-ssDNA overhang and facilitates RecA-binding to the ssDNA for homologous DNA recombination and repair. Holoenzyme degrades any linearized DNA that is unable to undergo homologous recombination. In the holoenzyme this subunit contributes ATPase, 3'-5' helicase, exonuclease activity and loads RecA onto ssDNA.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>ATP + H2O = ADP + H(+) + phosphate</text>
            <dbReference type="Rhea" id="RHEA:13065"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:43474"/>
            <dbReference type="ChEBI" id="CHEBI:456216"/>
            <dbReference type="EC" id="3.6.4.12"/>
        </reaction>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="8">
            <text>Exonucleolytic cleavage (in the presence of ATP) in either 5'- to 3'- or 3'- to 5'-direction to yield 5'-phosphooligonucleotides.</text>
            <dbReference type="EC" id="3.1.11.5"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="8">
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </cofactor>
        <text evidence="8">Binds 1 Mg(2+) ion per subunit.</text>
    </comment>
    <comment type="subunit">
        <text evidence="8">Heterotrimer of RecB, RecC and RecD. All subunits contribute to DNA-binding. Interacts with RecA.</text>
    </comment>
    <comment type="domain">
        <text evidence="8">The C-terminal domain has nuclease activity and interacts with RecD. It interacts with RecA, facilitating its loading onto ssDNA.</text>
    </comment>
    <comment type="domain">
        <text evidence="8">The N-terminal DNA-binding domain is a ssDNA-dependent ATPase and has ATP-dependent 3'-5' helicase function. This domain interacts with RecC.</text>
    </comment>
    <comment type="similarity">
        <text evidence="8">Belongs to the helicase family. UvrD subfamily.</text>
    </comment>
    <dbReference type="EC" id="3.1.11.5" evidence="8"/>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX33167.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012202453.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_0521"/>
    <dbReference type="PRIDE" id="A9BRA9"/>
    <dbReference type="EnsemblBacteria" id="ABX33167">
        <property type="protein sequence ID" value="ABX33167"/>
        <property type="gene ID" value="Daci_0521"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_0521"/>
    <dbReference type="eggNOG" id="COG1074">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_001114_6_0_4"/>
    <dbReference type="OMA" id="KQSIYRW"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016887">
        <property type="term" value="F:ATP hydrolysis activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="RHEA"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003678">
        <property type="term" value="F:DNA helicase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008854">
        <property type="term" value="F:exodeoxyribonuclease V activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000287">
        <property type="term" value="F:magnesium ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000724">
        <property type="term" value="P:double-strand break repair via homologous recombination"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.320.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01485">
        <property type="entry name" value="RecB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014017">
        <property type="entry name" value="DNA_helicase_UvrD-like_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000212">
        <property type="entry name" value="DNA_helicase_UvrD/REP"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011604">
        <property type="entry name" value="PDDEXK-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038726">
        <property type="entry name" value="PDDEXK_AddAB-type"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004586">
        <property type="entry name" value="RecB"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011335">
        <property type="entry name" value="Restrct_endonuc-II-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014016">
        <property type="entry name" value="UvrD-like_ATP-bd"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11070">
        <property type="entry name" value="PTHR11070"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11070:SF23">
        <property type="entry name" value="PTHR11070:SF23"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12705">
        <property type="entry name" value="PDDEXK_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00580">
        <property type="entry name" value="UvrD-helicase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13361">
        <property type="entry name" value="UvrD_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52980">
        <property type="entry name" value="SSF52980"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00609">
        <property type="entry name" value="recB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51198">
        <property type="entry name" value="UVRD_HELICASE_ATP_BIND"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51217">
        <property type="entry name" value="UVRD_HELICASE_CTER"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="6 8 9" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="4 8" id="KW-0227">DNA damage</keyword>
    <keyword evidence="7 8" id="KW-0234">DNA repair</keyword>
    <keyword evidence="8" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="5 8" id="KW-0269">Exonuclease</keyword>
    <keyword evidence="8 9" id="KW-0347">Helicase</keyword>
    <keyword evidence="8 9" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="8" id="KW-0460">Magnesium</keyword>
    <keyword evidence="8" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="2 8" id="KW-0540">Nuclease</keyword>
    <keyword evidence="3 8 9" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="13" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="UvrD-like helicase ATP-binding" evidence="10">
        <location>
            <begin position="9"/>
            <end position="486"/>
        </location>
    </feature>
    <feature type="domain" description="UvrD-like helicase C-terminal" evidence="11">
        <location>
            <begin position="526"/>
            <end position="798"/>
        </location>
    </feature>
    <feature type="region of interest" description="DNA-binding and helicase activity, interacts with RecC" evidence="8">
        <location>
            <begin position="1"/>
            <end position="939"/>
        </location>
    </feature>
    <feature type="region of interest" description="Nuclease activity, interacts with RecD and RecA" evidence="8">
        <location>
            <begin position="964"/>
            <end position="1274"/>
        </location>
    </feature>
    <feature type="active site" description="For nuclease activity" evidence="8">
        <location>
            <position position="1172"/>
        </location>
    </feature>
    <feature type="binding site" evidence="9">
        <location>
            <begin position="30"/>
            <end position="37"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="8">
        <location>
            <position position="1044"/>
        </location>
        <ligand>
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="8">
        <location>
            <position position="1159"/>
        </location>
        <ligand>
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="8">
        <location>
            <position position="1172"/>
        </location>
        <ligand>
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001665"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022722"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022763"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022839"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023204"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01485"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00560"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="10">
        <source>
            <dbReference type="PROSITE" id="PS51198"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="11">
        <source>
            <dbReference type="PROSITE" id="PS51217"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="EMBL" id="ABX33167.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="13">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="1274" mass="141011" checksum="B8CA6630112AD118" modified="2008-01-15" version="1"> </sequence>
</entry>
<entry dataset="Swiss-Prot" created="2009-03-24" modified="2022-08-03" version="80" xmlns="http://uniprot.org/uniprot">
    <accession>A9BRD7</accession>
    <name>TGT_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Queuine tRNA-ribosyltransferase</fullName>
            <ecNumber evidence="1">2.4.2.29</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="1">Guanine insertion enzyme</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="1">tRNA-guanine transglycosylase</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="1" type="primary">tgt</name>
        <name type="ordered locus">Daci_0549</name>
    </gene>
    <organism>
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference key="1">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain>DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="1">Catalyzes the base-exchange of a guanine (G) residue with the queuine precursor 7-aminomethyl-7-deazaguanine (PreQ1) at position 34 (anticodon wobble position) in tRNAs with GU(N) anticodons (tRNA-Asp, -Asn, -His and -Tyr). Catalysis occurs through a double-displacement mechanism. The nucleophile active site attacks the C1' of nucleotide 34 to detach the guanine base from the RNA, forming a covalent enzyme-RNA intermediate. The proton acceptor active site deprotonates the incoming PreQ1, allowing a nucleophilic attack on the C1' of the ribose to form the product. After dissociation, two additional enzymatic reactions on the tRNA convert PreQ1 to queuine (Q), resulting in the hypermodified nucleoside queuosine (7-(((4,5-cis-dihydroxy-2-cyclopenten-1-yl)amino)methyl)-7-deazaguanosine).</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>7-aminomethyl-7-carbaguanine + guanosine(34) in tRNA = 7-aminomethyl-7-carbaguanosine(34) in tRNA + guanine</text>
            <dbReference type="Rhea" id="RHEA:24104"/>
            <dbReference type="Rhea" id="RHEA-COMP:10341"/>
            <dbReference type="Rhea" id="RHEA-COMP:10342"/>
            <dbReference type="ChEBI" id="CHEBI:16235"/>
            <dbReference type="ChEBI" id="CHEBI:58703"/>
            <dbReference type="ChEBI" id="CHEBI:74269"/>
            <dbReference type="ChEBI" id="CHEBI:82833"/>
            <dbReference type="EC" id="2.4.2.29"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </cofactor>
        <text evidence="1">Binds 1 zinc ion per subunit.</text>
    </comment>
    <comment type="pathway">
        <text evidence="1">tRNA modification; tRNA-queuosine biosynthesis.</text>
    </comment>
    <comment type="subunit">
        <text evidence="1">Homodimer. Within each dimer, one monomer is responsible for RNA recognition and catalysis, while the other monomer binds to the replacement base PreQ1.</text>
    </comment>
    <comment type="similarity">
        <text evidence="1">Belongs to the queuine tRNA-ribosyltransferase family.</text>
    </comment>
    <dbReference type="EC" id="2.4.2.29" evidence="1"/>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX33195.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012202481.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A9BRD7"/>
    <dbReference type="SMR" id="A9BRD7"/>
    <dbReference type="STRING" id="398578.Daci_0549"/>
    <dbReference type="PRIDE" id="A9BRD7"/>
    <dbReference type="EnsemblBacteria" id="ABX33195">
        <property type="protein sequence ID" value="ABX33195"/>
        <property type="gene ID" value="Daci_0549"/>
    </dbReference>
    <dbReference type="GeneID" id="60690892"/>
    <dbReference type="KEGG" id="dac:Daci_0549"/>
    <dbReference type="eggNOG" id="COG0343">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_022060_0_1_4"/>
    <dbReference type="OMA" id="GIDLFDC"/>
    <dbReference type="UniPathway" id="UPA00392"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008479">
        <property type="term" value="F:queuine tRNA-ribosyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008616">
        <property type="term" value="P:queuosine biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0101030">
        <property type="term" value="P:tRNA-guanine transglycosylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.20.20.105">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00168">
        <property type="entry name" value="Q_tRNA_Tgt"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004803">
        <property type="entry name" value="TGT"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036511">
        <property type="entry name" value="TGT-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002616">
        <property type="entry name" value="tRNA_ribo_trans-like"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01702">
        <property type="entry name" value="TGT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51713">
        <property type="entry name" value="SSF51713"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00430">
        <property type="entry name" value="Q_tRNA_tgt"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00449">
        <property type="entry name" value="tgt_general"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword id="KW-0328">Glycosyltransferase</keyword>
    <keyword id="KW-0479">Metal-binding</keyword>
    <keyword id="KW-0671">Queuosine biosynthesis</keyword>
    <keyword id="KW-1185">Reference proteome</keyword>
    <keyword id="KW-0808">Transferase</keyword>
    <keyword id="KW-0819">tRNA processing</keyword>
    <keyword id="KW-0862">Zinc</keyword>
    <feature type="chain" id="PRO_1000097539" description="Queuine tRNA-ribosyltransferase">
        <location>
            <begin position="1"/>
            <end position="390"/>
        </location>
    </feature>
    <feature type="region of interest" description="RNA binding" evidence="1">
        <location>
            <begin position="253"/>
            <end position="259"/>
        </location>
    </feature>
    <feature type="region of interest" description="RNA binding; important for wobble base 34 recognition" evidence="1">
        <location>
            <begin position="277"/>
            <end position="281"/>
        </location>
    </feature>
    <feature type="active site" description="Proton acceptor" evidence="1">
        <location>
            <position position="92"/>
        </location>
    </feature>
    <feature type="active site" description="Nucleophile" evidence="1">
        <location>
            <position position="272"/>
        </location>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <begin position="92"/>
            <end position="96"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <position position="146"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <position position="195"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <position position="222"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <position position="310"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <position position="312"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <position position="315"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <position position="354"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000255" key="1">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00168"/>
        </source>
    </evidence>
    <sequence length="390" mass="43545" checksum="0184C3E46B97972C" modified="2008-01-15" version="1">MLQFDLLKTDPSSHARRGQLTLNHGVVQTPIFMPVGTYGTVKGVMPRSLQEMGAQIILGNTFHLWMRPGLDIMQSFGGLHGFEKWDKPILTDSGGFQVWSLGAMRKITEEGVHFASPVNGDKLFMSPEVSMQIQTVLNSDIVMQLDECTPYETNGHKTTEAEARKSMEMSRRWAKRSSDEFQRLGNPNALFGIVQGGMYENLREESLQALVEMDFPGYAVGGVSVGEPKDEMLAIMAHTPHRLPAHKPRYLMGVGTPEDLVQGVADGVDMFDCVMPTRNARNGTIFTRYGDLKIRNARHKTDHQPLDPSCTCHACAGTSGVSWEQGGRDGFSRAYLHHLDRCGEMLGPMLTTIHNLHYYLNLMQEVRNALEAGNFTEMRARFKAERARGV</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="56" xmlns="http://uniprot.org/uniprot">
    <accession>A9BRR2</accession>
    <name>A9BRR2_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ordered locus">Daci_0983</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="5" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Periplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the UPF0065 (bug) family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX33629.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_0983"/>
    <dbReference type="PRIDE" id="A9BRR2"/>
    <dbReference type="EnsemblBacteria" id="ABX33629">
        <property type="protein sequence ID" value="ABX33629"/>
        <property type="gene ID" value="Daci_0983"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_0983"/>
    <dbReference type="eggNOG" id="COG3181">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_045683_0_0_4"/>
    <dbReference type="OMA" id="AYAWQGM"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0042597">
        <property type="term" value="C:periplasmic space"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.190.150">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005064">
        <property type="entry name" value="BUG"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR042100">
        <property type="entry name" value="Bug_dom1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR42928">
        <property type="entry name" value="PTHR42928"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03401">
        <property type="entry name" value="TctC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF017082">
        <property type="entry name" value="YflP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="3">
        <location>
            <begin position="1"/>
            <end position="28"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5002735731" evidence="3">
        <location>
            <begin position="29"/>
            <end position="339"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004418"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00006987"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="ABX33629.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="339" mass="35780" checksum="B4E4C0A24A76300D" modified="2008-01-15" version="1">MLFNPMALHRQAWLSCALLTLGMGTAQAQSAPAPSSQSAPAWPTQPVKWVVPYAPGGTTDVIARQLAVQMGKDLGQPVVVDNRPGAASIIGATLIARAPADGYTLGTADSGTLAFNPAMYARLSYDAGKDFSYIGGLGRMPLVLAVHPSFPAKNVQEFLAMARKEPGGISSASSGPGSPLHVALELFKQRTGTQILHVAYKGSAPALQDLMAGQIQSMFVDLPPSISAIRAGKLRVLAVATPQRLPILPDVPTMAEAGVPGFEAYAWQGFVGPAHLSPALTERLNKSLATALRHPETRAKLEEIGIQPMEMTPQQFAGFVRSEQALWSGVIKAANIKMD</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="74" xmlns="http://uniprot.org/uniprot">
    <accession>A9BS91</accession>
    <name>A9BS91_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Molecular chaperone, HSP70 class</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ordered locus">Daci_1060</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="5" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the heat shock protein 70 family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX33705.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_1060"/>
    <dbReference type="PRIDE" id="A9BS91"/>
    <dbReference type="EnsemblBacteria" id="ABX33705">
        <property type="protein sequence ID" value="ABX33705"/>
        <property type="gene ID" value="Daci_1060"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_1060"/>
    <dbReference type="eggNOG" id="COG0443">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_033976_2_0_4"/>
    <dbReference type="OMA" id="HEYLEGY"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0140662">
        <property type="term" value="F:ATP-dependent protein folding chaperone"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd10231">
        <property type="entry name" value="YegD_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043129">
        <property type="entry name" value="ATPase_NBD"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018181">
        <property type="entry name" value="Heat_shock_70_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013126">
        <property type="entry name" value="Hsp_70_fam"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR042054">
        <property type="entry name" value="YegD-like"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR19375">
        <property type="entry name" value="PTHR19375"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00012">
        <property type="entry name" value="HSP70"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53067">
        <property type="entry name" value="SSF53067"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00329">
        <property type="entry name" value="HSP70_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="2" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00007381"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="ABX33705.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="443" mass="47961" checksum="1A92DE6008EA16A4" modified="2008-01-15" version="1">MPTPVGVFVAAAAFLEGRRGAALLAMTTASTPATLGIDFGTSNSAMAWRAPGQTARLLPLEGDACGMPTALFFHTDEHSTHFGRDAMAQYLDGEPGRLMRSLKSLLGSALLQEKTAVHDQFVSYQDIIGLFLRRVADRARASLDGRLPERVVLGRPVHFVDDHPERDRQAQQALADAARAAGLGEVDFQMEPIAAALDYEQRLTQESVVLVVDIGGGTSDFTVVRLGPEQAGRSDRRDDILATSGVHIGGTDFDHRLNLAQLMPLLGYRHIGPSGREVPSRVFFDLSTWHLIQWLYSPKALAEARNLRTDYSDQRLHKRLMEVLELREGHRLAAVVEQAKIEASTRHAEAAIELGWLESGLSAAISPEVLHEQLQGPLQQVVACAQDCLRLAGVAPQALDAIYLTGGSSALRTLRDALREAFPGVPQVEGDLFGGVATGLAYA</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="59" xmlns="http://uniprot.org/uniprot">
    <accession>A9BSL3</accession>
    <name>A9BSL3_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Daci_1374</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="4" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX34018.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_1374"/>
    <dbReference type="PRIDE" id="A9BSL3"/>
    <dbReference type="EnsemblBacteria" id="ABX34018">
        <property type="protein sequence ID" value="ABX34018"/>
        <property type="gene ID" value="Daci_1374"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_1374"/>
    <dbReference type="eggNOG" id="COG5361">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_027269_1_1_4"/>
    <dbReference type="OMA" id="PPVRGFW"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.120.600">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.40.1610">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010621">
        <property type="entry name" value="DUF1214"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037049">
        <property type="entry name" value="DUF1214_C_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010679">
        <property type="entry name" value="DUF1254"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037050">
        <property type="entry name" value="DUF1254_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF06742">
        <property type="entry name" value="DUF1214"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF06863">
        <property type="entry name" value="DUF1254"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="DUF1254" evidence="2">
        <location>
            <begin position="50"/>
            <end position="183"/>
        </location>
    </feature>
    <feature type="domain" description="DUF1214" evidence="1">
        <location>
            <begin position="313"/>
            <end position="425"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF06742"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF06863"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ABX34018.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="445" mass="48302" checksum="AE4F9AE035696A13" modified="2008-01-15" version="1">MRHAMDLSALAEEAVIHTCPLYEMRRMRAATSPRRNAAGEAAPAPLRWCNQFVHARQLLRAGTSRVVTPNNDTLYTNAWLDLGAGPLVIDVPDTAGRYYVLGLLDFFTNPFAHLGQRLTGTAARSFLVTPPGWQGALPPPFDAPGAHIAAPTPWLWVIGRILVDGVHDLPAVHALQDGFAVRPLADWQAGTPSQARAFDPDCDPQAPPNAEHYAAQVNAALRDNPPPAGHAARVARFAAVGLGAGLGAPDAQQQAALQRALDSVLPRLRAASTGRRLDSGWELPALVEGSFGDDFQARAEIAFKYIGMLESREAIYPLAWHDARGRPLDGSRRYRLRFAPGALPPVQAFWSLTLYGAHDCMLVDNPIDRHAIGDRTPGLCPDSDGDGGLTIHISHAPPASEEHRANWLPAPREGFYLCLRAYMPRPELLDGRYALPPIEPDPETP</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="76" xmlns="http://uniprot.org/uniprot">
    <accession>A9BSL9</accession>
    <name>A9BSL9_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Transcriptional regulator, LysR family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Daci_1380</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="4" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the LysR transcriptional regulatory family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX34024.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012203310.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_1380"/>
    <dbReference type="PRIDE" id="A9BSL9"/>
    <dbReference type="EnsemblBacteria" id="ABX34024">
        <property type="protein sequence ID" value="ABX34024"/>
        <property type="gene ID" value="Daci_1380"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_1380"/>
    <dbReference type="eggNOG" id="COG0583">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_039613_6_0_4"/>
    <dbReference type="OMA" id="MDLRDLT"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003700">
        <property type="term" value="F:DNA-binding transcription factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd08435">
        <property type="entry name" value="PBP2_GbpR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037405">
        <property type="entry name" value="GbpR_PBP2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005119">
        <property type="entry name" value="LysR_subst-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000847">
        <property type="entry name" value="Tscrpt_reg_HTH_LysR"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036390">
        <property type="entry name" value="WH_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00126">
        <property type="entry name" value="HTH_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03466">
        <property type="entry name" value="LysR_substrate"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00039">
        <property type="entry name" value="HTHLYSR"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46785">
        <property type="entry name" value="SSF46785"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50931">
        <property type="entry name" value="HTH_LYSR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HTH lysR-type" evidence="2">
        <location>
            <begin position="1"/>
            <end position="60"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00009437"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS50931"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ABX34024.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="309" mass="34250" checksum="B157C00556160CBC" modified="2008-01-15" version="1">MDLHLRDLRFFEIVADLGHLGRAAEQLGRTQPALSKCIQRLELTVGGALFERAGRGIRLTPLGDVLLARARMLRNASQEALREVRDFNEGHAGHVRIGSGPVAADHLLPELCSKALADGRRITISIVIGPSWELRDRLREGQLDLLIGLTADGDPELVSHPIAEDVVVVAARQDHPVFERQRITMAALLRHPWALPSANIPSRQWLDQAFTSRGMPAPTVQVEAGSIPLLPRMVAKTDLLTFVSRHTLRLERSRTLREVRLPATTLRRHLGVTCRRDGYLSPAARHMLELLRADGQALFGEDASPLDED</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2020-02-26" version="28" xmlns="http://uniprot.org/uniprot">
    <accession>A9BSV9</accession>
    <name>A9BSV9_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_1676</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX34319.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_1676"/>
    <dbReference type="EnsemblBacteria" id="ABX34319">
        <property type="protein sequence ID" value="ABX34319"/>
        <property type="gene ID" value="Daci_1676"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_1676"/>
    <dbReference type="HOGENOM" id="CLU_208939_2_0_4"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="12"/>
            <end position="33"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX34319.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="35" mass="3863" checksum="E98A4017856E8765" modified="2008-01-15" version="1">MDAQQRKANLRLALILVSVALVFLAGFVIKITVLH</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="53" xmlns="http://uniprot.org/uniprot">
    <accession>A9BSY6</accession>
    <name>A9BSY6_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Daci_1703</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="2" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX34346.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012203631.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_1703"/>
    <dbReference type="PRIDE" id="A9BSY6"/>
    <dbReference type="EnsemblBacteria" id="ABX34346">
        <property type="protein sequence ID" value="ABX34346"/>
        <property type="gene ID" value="Daci_1703"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_1703"/>
    <dbReference type="eggNOG" id="COG2842">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_862551_0_0_4"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008868">
        <property type="entry name" value="TniB"/>
    </dbReference>
    <dbReference type="Pfam" id="PF05621">
        <property type="entry name" value="TniB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ABX34346.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="322" mass="36251" checksum="189AB5F7348ED338" modified="2008-01-15" version="1">MENSGKNKYFDQSMQFDAIASDDELLEARRLATYSVNALRVAKSVDRTFVLFPAAVQALTSLDRLFQLGTEFNMPQGMRLVGPSGVGKTASFEYFRASLPNSALFAQGMAAISVRVQNKPRTSHLVQAILNAIRYPFNSGSARQLYMRRSLLFDALKNYKTRLIWLDEAQHLLYQRRSEMSNEWENDATEFLRELVDECKLSLVLAGTSELDNLPEVAPHLSSRVSGRESMDNFIADANWVGFVRGFVKQCQSFDLTCMNDVQMAMRLHMASEGNLRAFKRLVTEAVLIAYDSNDRQVDRKALQRGFQGVFGAGAVRGNPFV</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="65" xmlns="http://uniprot.org/uniprot">
    <accession>A9BT18</accession>
    <name>A9BT18_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">AAA ATPase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_1735</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX34378.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012203663.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_1735"/>
    <dbReference type="PRIDE" id="A9BT18"/>
    <dbReference type="EnsemblBacteria" id="ABX34378">
        <property type="protein sequence ID" value="ABX34378"/>
        <property type="gene ID" value="Daci_1735"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_1735"/>
    <dbReference type="eggNOG" id="COG3839">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_028965_0_1_4"/>
    <dbReference type="OMA" id="ESHLHPP"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016887">
        <property type="term" value="F:ATP hydrolysis activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003593">
        <property type="entry name" value="AAA+_ATPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003959">
        <property type="entry name" value="ATPase_AAA_core"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13304">
        <property type="entry name" value="AAA_21"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00382">
        <property type="entry name" value="AAA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="AAA" evidence="1">
        <location>
            <begin position="184"/>
            <end position="409"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="SMART" id="SM00382"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX34378.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="484" mass="54756" checksum="9D1781E3AFF055BB" modified="2008-01-15" version="1">MNFYKSTKNRDYVLPQGAELPCVVYIVDNWDDYNFETLYHLCLFKKSGGKEVLGDVKILQTNSRNTKIPDSFPSLGPEFFSLGQDLEYYENMRKHLPKTHRKVLDALNDVVVKPQLLDEIETSSGFRNSLIRFNDAKLALRDGLATLEERPLEKGYRFMYSGKIPGAEEGVSIDVDLQPDDPVPGRILAIIGRNGVGKTQFLAQLARDLATTKRVSIETASQVESAFEPARPLFSRVIALSFSAFDKFQRPEPEKYFSYIYCGVRDDSGGISRRALEAKHLEYLKRIVEQDREDHWEQHVANVMGVPKKIISITEHIEELEKSLPPTMSSGQSILAYFISAALAYLKEGSLVIFDEPEIHLHPNAVALLMQTLQALLKEFDSYAIIATHSPVVIQEVPRKRVIRFEREGNITTGSPLGHESFGENIAELTRLVFETVEIPNFYKKTLQALAKKHDFDTVAKMFDEQLSLHATAYLASLYEDGDA</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2020-12-02" version="46" xmlns="http://uniprot.org/uniprot">
    <accession>A9BT31</accession>
    <name>A9BT31_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Integrase, catalytic region</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_1748</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX34391.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_1748"/>
    <dbReference type="EnsemblBacteria" id="ABX34391">
        <property type="protein sequence ID" value="ABX34391"/>
        <property type="gene ID" value="Daci_1748"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_1748"/>
    <dbReference type="eggNOG" id="COG2801">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_027402_24_0_4"/>
    <dbReference type="OMA" id="VYVAFIN"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025948">
        <property type="entry name" value="HTH-like_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13276">
        <property type="entry name" value="HTH_21"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HTH_21" evidence="1">
        <location>
            <begin position="3"/>
            <end position="29"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF13276"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX34391.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="79" mass="8997" checksum="93CF73E9444F3EDC" modified="2008-01-15" version="1">MAREGVVVARCTVERLMRSMGLRGVTRGKVVRTTIGDAKAPCPLGRMNRQFLVERPNQLWVSDFTYVSTWQGWLSTKHC</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2021-06-02" version="39" xmlns="http://uniprot.org/uniprot">
    <accession>A9BT47</accession>
    <name>A9BT47_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_1972</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX34612.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012203897.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="ABX34612">
        <property type="protein sequence ID" value="ABX34612"/>
        <property type="gene ID" value="Daci_1972"/>
    </dbReference>
    <dbReference type="GeneID" id="60686340"/>
    <dbReference type="KEGG" id="dac:Daci_1972"/>
    <dbReference type="eggNOG" id="COG2267">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_161887_0_0_4"/>
    <dbReference type="OMA" id="MNASNKP"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="56"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="1"/>
            <end position="15"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX34612.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="125" mass="11776" checksum="939F0738A867BBA6" modified="2008-01-15" version="1">MNASNKPSIQPIQPVSTDAPEDEDLAEQARPGHGVPSQDPDASAQFELSPEDAERESRSVFIGGGVLAGAAAGAAAGAAIAGPVGVVVGGTVGSVAGALGGAAAGAVAPAQGAEKPSHPGSKSSG</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="77" xmlns="http://uniprot.org/uniprot">
    <accession>A9BTB8</accession>
    <name>A9BTB8_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="7">Transcriptional regulator, MerR family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ordered locus">Daci_2043</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="8" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX34683.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012203968.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_2043"/>
    <dbReference type="PRIDE" id="A9BTB8"/>
    <dbReference type="EnsemblBacteria" id="ABX34683">
        <property type="protein sequence ID" value="ABX34683"/>
        <property type="gene ID" value="Daci_2043"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_2043"/>
    <dbReference type="eggNOG" id="COG0789">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_060077_4_3_4"/>
    <dbReference type="OMA" id="HPCERLR"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006355">
        <property type="term" value="P:regulation of transcription, DNA-templated"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009061">
        <property type="entry name" value="DNA-bd_dom_put_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000551">
        <property type="entry name" value="MerR-type_HTH_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015358">
        <property type="entry name" value="Tscrpt_reg_MerR_DNA-bd"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00376">
        <property type="entry name" value="MerR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF09278">
        <property type="entry name" value="MerR-DNA-bind"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00040">
        <property type="entry name" value="HTHMERR"/>
    </dbReference>
    <dbReference type="SMART" id="SM00422">
        <property type="entry name" value="HTH_MERR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46955">
        <property type="entry name" value="SSF46955"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00552">
        <property type="entry name" value="HTH_MERR_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50937">
        <property type="entry name" value="HTH_MERR_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="2" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0804">Transcription</keyword>
    <keyword evidence="1" id="KW-0805">Transcription regulation</keyword>
    <feature type="domain" description="HTH merR-type" evidence="6">
        <location>
            <begin position="1"/>
            <end position="68"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="5">
        <location>
            <begin position="121"/>
            <end position="155"/>
        </location>
    </feature>
    <feature type="coiled-coil region" evidence="4">
        <location>
            <begin position="80"/>
            <end position="107"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023015"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023163"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="PROSITE" id="PS50937"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="ABX34683.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="155" mass="17327" checksum="000948D677BBF228" modified="2008-01-15" version="1">MLISELAQLTGVSIHALRHYERAGLLKPRRLPNGYRDYPRSARREVVFIAMSRALGFGLPRIAENLRAWRAGRIGPGDLADAVQQRVQEIDEQIAALQAQRAQALDHVQWLRARQAERDLAQMAPAPASTPDKPAAPWPRVRRAASPTTKETSHD</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="58" xmlns="http://uniprot.org/uniprot">
    <accession>A9BTD5</accession>
    <name>A9BTD5_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Diguanylate phosphodiesterase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_2060</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX34700.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012203983.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_2060"/>
    <dbReference type="PRIDE" id="A9BTD5"/>
    <dbReference type="EnsemblBacteria" id="ABX34700">
        <property type="protein sequence ID" value="ABX34700"/>
        <property type="gene ID" value="Daci_2060"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_2060"/>
    <dbReference type="eggNOG" id="COG2200">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_569532_0_0_4"/>
    <dbReference type="OMA" id="LYHECLL"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="CDD" id="cd01948">
        <property type="entry name" value="EAL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.20.20.450">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001633">
        <property type="entry name" value="EAL_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035919">
        <property type="entry name" value="EAL_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00563">
        <property type="entry name" value="EAL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00052">
        <property type="entry name" value="EAL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF141868">
        <property type="entry name" value="SSF141868"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50883">
        <property type="entry name" value="EAL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="EAL" evidence="1">
        <location>
            <begin position="157"/>
            <end position="419"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS50883"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX34700.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="479" mass="51328" checksum="02B165CF18C22A95" modified="2008-01-15" version="1">MHDDIIEAPPGDTPVDLAIWLSPLQTWRSVYGNGFCEEAMRVCVERLTGLGIDAESLERAGDTVLVRGFDPRTMADTVLPGNQARHGWMHALESALVRDPVVDGARQAYLRAEVQALGCVSLTGLHEIRGKGHATAGVQDMAVRRMHPRLIKAYQADMQLAGRLLDDLRLGHLALAFQPVTLLEPAGMAGGGSGAGAGRTLYHECLLRRSVFSAYDNYAVPHAIEALERLGLAARLDRSVLWSVIGALEMETGHSLGCNLSAASFCDDAWWDGVFDYLEDRPEIAQRLVLEITETGAFPCEKAALGLVRHLQILGVRVALDDIVPRRGGLDILGKLRANIVKIDKSVLDQSLQARPSARMMQGLVSLCADRGACVIVEGIESAQGLEAVALAGAHGAQGFFIARPSLHGLLDQVVRVEDVLEVLEATEVQDGDELDMALSWSGMERMSALVAASAVSGGAEVSAAETGMGTGFFLRARA</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="33" xmlns="http://uniprot.org/uniprot">
    <accession>A9BTE7</accession>
    <name>A9BTE7_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Daci_2275</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="2" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX34915.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012204198.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_2275"/>
    <dbReference type="PRIDE" id="A9BTE7"/>
    <dbReference type="EnsemblBacteria" id="ABX34915">
        <property type="protein sequence ID" value="ABX34915"/>
        <property type="gene ID" value="Daci_2275"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_2275"/>
    <dbReference type="HOGENOM" id="CLU_1052609_0_0_4"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ABX34915.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="264" mass="28332" checksum="673A03F6840B6EA9" modified="2008-01-15" version="1">MKNHARPEPQRHAQCIADAHQAVLFAAGVLKYTVKSILYDGAQERYSCPHLSRAFAALNQLPDPGCCPATSPNEPVRVDLLSLLALISSELEFARDTFRQNRLSAAGEAAFVHGLLEHAFEFADRLFGAYNELPNSLDDLRFLASFAAAKEAGNGINTFGSQADTASPVTAASPLLGSGHRASELLIRCSFDIEAAAHAVTALGDQITEPEQIQIASLIRCYGARIAKLNSVLMSYLTGDEVITLADAQHALYQGARQLPEGAL</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-05-25" version="67" xmlns="http://uniprot.org/uniprot">
    <accession>A9BTK1</accession>
    <name>A9BTK1_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="6">Ammonium transporter</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="9" type="ordered locus">Daci_2331</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="9 10" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="10" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="6">Cell membrane</location>
            <topology evidence="6">Multi-pass membrane protein</topology>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2 6">Belongs to the ammonia transporter channel (TC 1.A.11.2) family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX34969.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012204251.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_2331"/>
    <dbReference type="EnsemblBacteria" id="ABX34969">
        <property type="protein sequence ID" value="ABX34969"/>
        <property type="gene ID" value="Daci_2331"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_2331"/>
    <dbReference type="eggNOG" id="COG0004">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_000445_33_0_4"/>
    <dbReference type="OMA" id="IWLSIMS"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008519">
        <property type="term" value="F:ammonium transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.3430.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029020">
        <property type="entry name" value="Ammonium/urea_transptr"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001905">
        <property type="entry name" value="Ammonium_transpt"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR024041">
        <property type="entry name" value="NH4_transpt_AmtB-like_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43029">
        <property type="entry name" value="PTHR43029"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00909">
        <property type="entry name" value="Ammonium_transp"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00836">
        <property type="entry name" value="amt"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="6" id="KW-0924">Ammonia transport</keyword>
    <keyword evidence="5 6" id="KW-0472">Membrane</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="7" id="KW-0732">Signal</keyword>
    <keyword evidence="3 6" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="4 6" id="KW-1133">Transmembrane helix</keyword>
    <keyword evidence="6" id="KW-0813">Transport</keyword>
    <feature type="signal peptide" evidence="7">
        <location>
            <begin position="1"/>
            <end position="28"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5002733065" description="Ammonium transporter" evidence="7">
        <location>
            <begin position="29"/>
            <end position="446"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="52"/>
            <end position="73"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="80"/>
            <end position="101"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="146"/>
            <end position="168"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="175"/>
            <end position="196"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="208"/>
            <end position="232"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="244"/>
            <end position="264"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="276"/>
            <end position="294"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="306"/>
            <end position="325"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="331"/>
            <end position="351"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="363"/>
            <end position="382"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="394"/>
            <end position="418"/>
        </location>
    </feature>
    <feature type="domain" description="Ammonium_transp" evidence="8">
        <location>
            <begin position="50"/>
            <end position="442"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00005887"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="RuleBase" id="RU362002"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="Pfam" id="PF00909"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="ABX34969.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="446" mass="46469" checksum="E743510DA8A63DC6" modified="2008-01-15" version="1">MHRCARALRTLVAGGWVAVLGAAQTAQAAEQAITRPSLVAVESISAVDTVWLMTATVLVLLMTLPGIALFYAGMVRRKNVLNTMASVVAIACLVSILWFALGYSLAFTPGNAWIGGDSRAWFSGLDFNAAKGLVAVSHLAPHVPEAAYAMFQLAFAVITAALLVGAWVERMRFGAMLIFVGLWSLLVYAPVAHWVWEPGGWLARMGALDFAGGTVVHVNAGVAGLVCAWFLRPRRGYGHEPFEPYNLALTMMGAALLWMGWFGFNAGSSLAGDSRAALALAVTHIAASAGALAWSLAEYVVRGKATLLGLCSGLVGGLVAITPAAGFVTPLSALCIGLIAGVACYWGATGLKRLLGADDSLDVFGVHGVGGIVGSLLTGVFASPQIGGVQGSVLTQAVSVLAVALFTLVATAVLLWLLDMLIGLRVDEESELQGLDLALHRERLSG</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="60" xmlns="http://uniprot.org/uniprot">
    <accession>A9BTL8</accession>
    <name>A9BTL8_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ordered locus">Daci_2348</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="5" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Periplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the UPF0065 (bug) family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX34986.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012204268.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_2348"/>
    <dbReference type="PRIDE" id="A9BTL8"/>
    <dbReference type="EnsemblBacteria" id="ABX34986">
        <property type="protein sequence ID" value="ABX34986"/>
        <property type="gene ID" value="Daci_2348"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_2348"/>
    <dbReference type="eggNOG" id="COG3181">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_045683_1_2_4"/>
    <dbReference type="OMA" id="THVGMEQ"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0042597">
        <property type="term" value="C:periplasmic space"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.190.150">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005064">
        <property type="entry name" value="BUG"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR042100">
        <property type="entry name" value="Bug_dom1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006311">
        <property type="entry name" value="TAT_signal"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR42928">
        <property type="entry name" value="PTHR42928"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03401">
        <property type="entry name" value="TctC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF017082">
        <property type="entry name" value="YflP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51318">
        <property type="entry name" value="TAT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="3">
        <location>
            <begin position="1"/>
            <end position="32"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5002735088" evidence="3">
        <location>
            <begin position="33"/>
            <end position="331"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004418"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00006987"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="ABX34986.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="331" mass="35111" checksum="B7356B2023B6D0EA" modified="2008-01-15" version="1">MNTPRTRHASRREFVLATLGASALAATGPLFAQNWPERPITFICPWPAGGTADQSMRALCTVAGKLLGQPIAVENRAGASGMIGAKVLASARADGYTIGQIPISVTRFSQLGSLQADPRKDYTYIARTSGQTFGIAVPANSPFKTLKDFVAAAKARPGQVTYAHAGVGGATHVGMEEFAGVAGIQLNHVPYKGGAEALQGVLGGHVDALADSSSWAPHVEAGKLRLLATWGEQRTARFKDVPTLRECGYDVVVDAPNGIGAPRGLDPAVAARLREAFRAAVASPEFKSVAEKLDAPLLYLDGPDYEKYVNTVYQKETVLIDKLKLRELMKG</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2021-09-29" version="62" xmlns="http://uniprot.org/uniprot">
    <accession>A9BTR6</accession>
    <name>A9BTR6_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="7">Conjugal transfer protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ordered locus">Daci_2692</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="8" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Single-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX35330.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_003056121.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_2692"/>
    <dbReference type="EnsemblBacteria" id="ABX35330">
        <property type="protein sequence ID" value="ABX35330"/>
        <property type="gene ID" value="Daci_2692"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_2692"/>
    <dbReference type="eggNOG" id="COG3701">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_076026_0_0_4"/>
    <dbReference type="OMA" id="SVTERWT"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd16425">
        <property type="entry name" value="TrbF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR032710">
        <property type="entry name" value="NTF2-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035658">
        <property type="entry name" value="TrbF"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007430">
        <property type="entry name" value="VirB8"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04335">
        <property type="entry name" value="VirB8"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54427">
        <property type="entry name" value="SSF54427"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4 5" id="KW-0472">Membrane</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 5" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="3 5" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="43"/>
            <end position="61"/>
        </location>
    </feature>
    <feature type="domain" description="VirB8" evidence="6">
        <location>
            <begin position="23"/>
            <end position="225"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004167"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="Pfam" id="PF04335"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="ABX35330.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="234" mass="26297" checksum="84F306BAA6CEB00C" modified="2008-01-15" version="1">MRFKRPQVRYADTPQPATPYQSAAQVWDERIGSARVQARNWRFMAFGCLTLAVLMAGGLVWRSAQSIVTPYVIEVDNAGQVRAVGEAATPYKPSDAQIAYHLGRFIGLVRSLSIDPIVVRQNWLDAYDYTTDKGAVVLNEYARTNDPFARIGKESVTVQITSVTRASDTSFNVRWTETRFVNGALDRTERWNAVISTVLQTPRTEQRLRKNPLGIYVNGLSWSRELEANEGAKP</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2021-06-02" version="43" xmlns="http://uniprot.org/uniprot">
    <accession>A9BTW2</accession>
    <name>A9BTW2_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Daci_2738</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="2" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX35376.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012204591.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_2738"/>
    <dbReference type="EnsemblBacteria" id="ABX35376">
        <property type="protein sequence ID" value="ABX35376"/>
        <property type="gene ID" value="Daci_2738"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_2738"/>
    <dbReference type="eggNOG" id="COG3616">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_119528_1_1_4"/>
    <dbReference type="OMA" id="TQFEDES"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR021341">
        <property type="entry name" value="DUF2958"/>
    </dbReference>
    <dbReference type="Pfam" id="PF11171">
        <property type="entry name" value="DUF2958"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ABX35376.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="116" mass="12881" checksum="B8533474FC178F9A" modified="2008-01-15" version="1">MNHAFITDEQRIVLLANGRESLENPDFDPAPVVKLFTPDAGATWLLTEIDPDDHDHAFGLCDLGLGMPEIGWVSFSELATVRGRLGLPVERDLHFRAEKRLSAYARDARLAGRVVV</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="94" xmlns="http://uniprot.org/uniprot">
    <accession>A9BU67</accession>
    <name>A9BU67_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">Histidine kinase</fullName>
            <ecNumber evidence="2">2.7.13.3</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="10" type="ordered locus">Daci_3144</name>
    </gene>
    <organism evidence="10 11">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="10 11" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="11">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="11" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="11">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>ATP + protein L-histidine = ADP + protein N-phospho-L-histidine.</text>
            <dbReference type="EC" id="2.7.13.3"/>
        </reaction>
    </comment>
    <dbReference type="EC" id="2.7.13.3" evidence="2"/>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX35782.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012204983.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_3144"/>
    <dbReference type="PRIDE" id="A9BU67"/>
    <dbReference type="EnsemblBacteria" id="ABX35782">
        <property type="protein sequence ID" value="ABX35782"/>
        <property type="gene ID" value="Daci_3144"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_3144"/>
    <dbReference type="eggNOG" id="COG2205">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_000445_89_6_4"/>
    <dbReference type="OMA" id="RITLWLP"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000155">
        <property type="term" value="F:phosphorelay sensor kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd00082">
        <property type="entry name" value="HisKA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.565.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003660">
        <property type="entry name" value="HAMP_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003594">
        <property type="entry name" value="HATPase_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036890">
        <property type="entry name" value="HATPase_C_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005467">
        <property type="entry name" value="His_kinase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003661">
        <property type="entry name" value="HisK_dim/P"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036097">
        <property type="entry name" value="HisK_dim/P_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004358">
        <property type="entry name" value="Sig_transdc_His_kin-like_C"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00672">
        <property type="entry name" value="HAMP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02518">
        <property type="entry name" value="HATPase_c"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00512">
        <property type="entry name" value="HisKA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00344">
        <property type="entry name" value="BCTRLSENSOR"/>
    </dbReference>
    <dbReference type="SMART" id="SM00304">
        <property type="entry name" value="HAMP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00387">
        <property type="entry name" value="HATPase_c"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00388">
        <property type="entry name" value="HisKA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47384">
        <property type="entry name" value="SSF47384"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55874">
        <property type="entry name" value="SSF55874"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50885">
        <property type="entry name" value="HAMP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50109">
        <property type="entry name" value="HIS_KIN"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="5 10" id="KW-0418">Kinase</keyword>
    <keyword evidence="7" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-0597">Phosphoprotein</keyword>
    <keyword evidence="11" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4" id="KW-0808">Transferase</keyword>
    <keyword evidence="7" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="7" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="236"/>
            <end position="255"/>
        </location>
    </feature>
    <feature type="domain" description="HAMP" evidence="9">
        <location>
            <begin position="257"/>
            <end position="309"/>
        </location>
    </feature>
    <feature type="domain" description="Histidine kinase" evidence="8">
        <location>
            <begin position="317"/>
            <end position="545"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="6">
        <location>
            <begin position="84"/>
            <end position="173"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Pro residues" evidence="6">
        <location>
            <begin position="97"/>
            <end position="138"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="6">
        <location>
            <begin position="139"/>
            <end position="162"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00000085"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00012438"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022553"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022777"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="PROSITE" id="PS50109"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="9">
        <source>
            <dbReference type="PROSITE" id="PS50885"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="EMBL" id="ABX35782.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="549" mass="59338" checksum="4B7FBB38743FA446" modified="2008-01-15" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="87" xmlns="http://uniprot.org/uniprot">
    <accession>A9BUJ6</accession>
    <name>A9BUJ6_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="5">ATP-dependent protease ATPase subunit HslU</fullName>
        </recommendedName>
        <alternativeName>
            <fullName evidence="5">Unfoldase HslU</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="5" type="primary">hslU</name>
        <name evidence="8" type="ordered locus">Daci_1460</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="9" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="5">ATPase subunit of a proteasome-like degradation complex; this subunit has chaperone activity. The binding of ATP and its subsequent hydrolysis by HslU are essential for unfolding of protein substrates subsequently hydrolyzed by HslV. HslU recognizes the N-terminal part of its protein substrates and unfolds these before they are guided to HslV for hydrolysis.</text>
    </comment>
    <comment type="subunit">
        <text evidence="5">A double ring-shaped homohexamer of HslV is capped on each side by a ring-shaped HslU homohexamer. The assembly of the HslU/HslV complex is dependent on binding of ATP.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="5">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="1 5">Belongs to the ClpX chaperone family. HslU subfamily.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX34104.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_1460"/>
    <dbReference type="PRIDE" id="A9BUJ6"/>
    <dbReference type="EnsemblBacteria" id="ABX34104">
        <property type="protein sequence ID" value="ABX34104"/>
        <property type="gene ID" value="Daci_1460"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_1460"/>
    <dbReference type="eggNOG" id="COG1220">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_033123_0_0_4"/>
    <dbReference type="OMA" id="KYGMIKT"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009376">
        <property type="term" value="C:HslUV protease complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016887">
        <property type="term" value="F:ATP hydrolysis activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008233">
        <property type="term" value="F:peptidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0036402">
        <property type="term" value="F:proteasome-activating activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043335">
        <property type="term" value="P:protein unfolding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00249">
        <property type="entry name" value="HslU"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003593">
        <property type="entry name" value="AAA+_ATPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003959">
        <property type="entry name" value="ATPase_AAA_core"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019489">
        <property type="entry name" value="Clp_ATPase_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004491">
        <property type="entry name" value="HslU"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR48102:SF3">
        <property type="entry name" value="PTHR48102:SF3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00004">
        <property type="entry name" value="AAA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07724">
        <property type="entry name" value="AAA_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00382">
        <property type="entry name" value="AAA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM01086">
        <property type="entry name" value="ClpB_D2-small"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00390">
        <property type="entry name" value="hslU"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3 5" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="4 5" id="KW-0143">Chaperone</keyword>
    <keyword evidence="5" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="2 5" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="8" id="KW-0346">Stress response</keyword>
    <feature type="domain" description="AAA" evidence="6">
        <location>
            <begin position="56"/>
            <end position="334"/>
        </location>
    </feature>
    <feature type="domain" description="ClpB_D2-small" evidence="7">
        <location>
            <begin position="337"/>
            <end position="433"/>
        </location>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <position position="25"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <begin position="67"/>
            <end position="72"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <position position="258"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <position position="323"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <position position="395"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00009771"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023186"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00249"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="SMART" id="SM00382"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="SMART" id="SM01086"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="ABX34104.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="445" mass="49452" checksum="7BD76A1B81A23106" modified="2008-01-15" version="1">MHRIHTMSSAMTPQEIVSELDRHIVGQAGAKRAVAIALRNRWRRQNVADGLRQEITPKNILMIGPTGVGKTEIARRLARLADAPFIKVEATKFTEVGYVGKDVDAIIRDLAEVAVKQTREADMKKLRLRAEDAAEDRILDVLVPQARSGEVAADNTARQVFRKKLREGQLDDKEIEIDVADAPPQVQIMGPQGMEEMAEQLRGMFSHMGQEKRKTRKLRIAEAMKLLTDEEAAKLVNEEDVRTRAIANAEQNGIVFIDEIDKVATRQETSGSDISRQGVQRDLLPLVEGTSVSTKYGVVKTDHILFIASGAFHLSKPSDLIPELQGRFPIRVELDSLSVQDFEAILTQTHASLVKQYQALLATEGVTLEFTPEGITRLAGIAFDVNERTENIGARRLSTVLERLLDEVSFDAANLSGQTISIDAAYVDQRLQSLSQDEDLSRFIL</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="44" xmlns="http://uniprot.org/uniprot">
    <accession>A9BUM8</accession>
    <name>A9BUM8_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_1492</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX34136.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_1492"/>
    <dbReference type="PRIDE" id="A9BUM8"/>
    <dbReference type="EnsemblBacteria" id="ABX34136">
        <property type="protein sequence ID" value="ABX34136"/>
        <property type="gene ID" value="Daci_1492"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_1492"/>
    <dbReference type="eggNOG" id="ENOG502Z9TC">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_086367_0_0_4"/>
    <dbReference type="OMA" id="FCDDPKS"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="156"/>
            <end position="187"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="171"/>
            <end position="187"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX34136.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="187" mass="20811" checksum="715F71D3F6CC9B1B" modified="2008-01-15" version="1">MVEEGLEWGAAKHRALRQLGLPARTALPGNDLVEEAVREYIALFCADTQPQELQALRELALQWMDRLAEFRPHLAGAVWRGTATRLSDIYLQLFCDDPKSAEIALINQHVEYEPSTVTGFTGQAVEALSIHAFCRPLNESVGVHLLVYDHDDLRGALKPDGQGRSPRGSAEALRRLLDQDEEEADRG</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2021-06-02" version="49" xmlns="http://uniprot.org/uniprot">
    <accession>A9BV49</accession>
    <name>A9BV49_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Flp pilus assembly protein CpaB</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ordered locus">Daci_2073</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="5" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
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        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
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    <dbReference type="EnsemblBacteria" id="ABX34713">
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        <property type="gene ID" value="Daci_2073"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_2073"/>
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        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
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    </dbReference>
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        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
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        <property type="entry name" value="Pilus_assmbl_Flp-typ_CpaB"/>
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        <property type="entry name" value="RcpC_dom"/>
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    </dbReference>
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    </dbReference>
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        <property type="entry name" value="pilus_cpaB"/>
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    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0472">Membrane</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
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    <keyword evidence="2" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="21"/>
            <end position="41"/>
        </location>
    </feature>
    <feature type="domain" description="SAF" evidence="3">
        <location>
            <begin position="67"/>
            <end position="127"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="194"/>
            <end position="235"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="208"/>
            <end position="235"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="SMART" id="SM00858"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="ABX34713.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="363" mass="38279" checksum="C16CAA311B04232B" modified="2008-01-15" version="1">MPEHRRHPLAPGAPAMNLTKILAGLLVGLAIVLAGLAWLLGSQPARPVAQPSPAASAQPAPEPVPQHAVVVVAQAIAAGQRIGSEDVKLAQLPAPVPGSFAATDDVLGRTTLMALTPGTPLFEQQLLSGLALQLEPGQRALAIAIREQMAAGHHVRPGDFVDVYFTLDGKSDQAPVDAQTRLLLARSRVLAYGSGSVERPPMPAVQRQAQQDKESAGSSLRRASAADQTGQRPENVQSAVLAVPLDDVERLTLAEKFGQLTLALRNPDDLSVPDPKLFAALPGALQPVAGRLRKDQALEGADRAFAGLRMQDLATGADARNIRKPAAQPMTAFAPAVRPPQQRAPRERTVELHNGAAVQMVNY</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="89" xmlns="http://uniprot.org/uniprot">
    <accession>A9BV55</accession>
    <name>A9BV55_DELAS</name>
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        <submittedName>
            <fullName evidence="13">ABC transporter related</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="13" type="ordered locus">Daci_2079</name>
    </gene>
    <organism evidence="13 14">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="13 14" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
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                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
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            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="14">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="14" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="14">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX34719.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012204002.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_2079"/>
    <dbReference type="PRIDE" id="A9BV55"/>
    <dbReference type="EnsemblBacteria" id="ABX34719">
        <property type="protein sequence ID" value="ABX34719"/>
        <property type="gene ID" value="Daci_2079"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_2079"/>
    <dbReference type="eggNOG" id="COG2274">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_000604_84_3_4"/>
    <dbReference type="OMA" id="HWFWSTL"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030256">
        <property type="term" value="C:type I protein secretion system complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0140359">
        <property type="term" value="F:ABC-type transporter activity"/>
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        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030253">
        <property type="term" value="P:protein secretion by the type I secretion system"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
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        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
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        <property type="entry name" value="AAA+_ATPase"/>
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        <property type="entry name" value="ABC1_TM_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036640">
        <property type="entry name" value="ABC1_TM_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003439">
        <property type="entry name" value="ABC_transporter-like_ATP-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017871">
        <property type="entry name" value="ABC_transporter-like_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010128">
        <property type="entry name" value="ATPase_T1SS_PrtD-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR24222:SF0">
        <property type="entry name" value="PTHR24222:SF0"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00664">
        <property type="entry name" value="ABC_membrane"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00005">
        <property type="entry name" value="ABC_tran"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00382">
        <property type="entry name" value="AAA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
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        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF90123">
        <property type="entry name" value="SSF90123"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50929">
        <property type="entry name" value="ABC_TM1F"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00211">
        <property type="entry name" value="ABC_TRANSPORTER_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50893">
        <property type="entry name" value="ABC_TRANSPORTER_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4 8" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="1" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="7 10" id="KW-0472">Membrane</keyword>
    <keyword evidence="3 8" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="14" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="5" id="KW-1278">Translocase</keyword>
    <keyword evidence="2 10" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="6 10" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="10">
        <location>
            <begin position="46"/>
            <end position="66"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="10">
        <location>
            <begin position="78"/>
            <end position="95"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="10">
        <location>
            <begin position="156"/>
            <end position="177"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="10">
        <location>
            <begin position="183"/>
            <end position="199"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="10">
        <location>
            <begin position="270"/>
            <end position="291"/>
        </location>
    </feature>
    <feature type="domain" description="ABC transmembrane type-1" evidence="12">
        <location>
            <begin position="47"/>
            <end position="323"/>
        </location>
    </feature>
    <feature type="domain" description="ABC transporter" evidence="11">
        <location>
            <begin position="355"/>
            <end position="589"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="9">
        <location>
            <begin position="587"/>
            <end position="623"/>
        </location>
    </feature>
    <feature type="binding site" evidence="8">
        <location>
            <begin position="388"/>
            <end position="395"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
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        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
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        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
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        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022967"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00434"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="11">
        <source>
            <dbReference type="PROSITE" id="PS50893"/>
        </source>
    </evidence>
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        <source>
            <dbReference type="PROSITE" id="PS50929"/>
        </source>
    </evidence>
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        <source>
            <dbReference type="EMBL" id="ABX34719.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="14">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="623" mass="67124" checksum="E710BAA1523A015C" modified="2008-01-15" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="74" xmlns="http://uniprot.org/uniprot">
    <accession>A9BVC5</accession>
    <name>A9BVC5_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="4 10">L-aspartate oxidase</fullName>
            <ecNumber evidence="4 10">1.4.3.16</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="13" type="ordered locus">Daci_2149</name>
    </gene>
    <organism evidence="13 14">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="13 14" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="14">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="14" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="14">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="10">Catalyzes the oxidation of L-aspartate to iminoaspartate.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="9">
            <text>L-aspartate + O2 = H2O2 + iminosuccinate</text>
            <dbReference type="Rhea" id="RHEA:25876"/>
            <dbReference type="ChEBI" id="CHEBI:15379"/>
            <dbReference type="ChEBI" id="CHEBI:16240"/>
            <dbReference type="ChEBI" id="CHEBI:29991"/>
            <dbReference type="ChEBI" id="CHEBI:77875"/>
            <dbReference type="EC" id="1.4.3.16"/>
        </reaction>
        <physiologicalReaction direction="left-to-right" evidence="9">
            <dbReference type="Rhea" id="RHEA:25877"/>
        </physiologicalReaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="1 10">
            <name>FAD</name>
            <dbReference type="ChEBI" id="CHEBI:57692"/>
        </cofactor>
    </comment>
    <comment type="pathway">
        <text evidence="2 10">Cofactor biosynthesis; NAD(+) biosynthesis; iminoaspartate from L-aspartate (oxidase route): step 1/1.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="10">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="3 10">Belongs to the FAD-dependent oxidoreductase 2 family. NadB subfamily.</text>
    </comment>
    <dbReference type="EC" id="1.4.3.16" evidence="4 10"/>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX34789.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012204072.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_2149"/>
    <dbReference type="PRIDE" id="A9BVC5"/>
    <dbReference type="EnsemblBacteria" id="ABX34789">
        <property type="protein sequence ID" value="ABX34789"/>
        <property type="gene ID" value="Daci_2149"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_2149"/>
    <dbReference type="eggNOG" id="COG0029">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_014312_3_0_4"/>
    <dbReference type="OMA" id="HCVQWLI"/>
    <dbReference type="UniPathway" id="UPA00253">
        <property type="reaction ID" value="UER00326"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008734">
        <property type="term" value="F:L-aspartate oxidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0044318">
        <property type="term" value="F:L-aspartate:fumarate oxidoreductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000166">
        <property type="term" value="F:nucleotide binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009435">
        <property type="term" value="P:NAD biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniPathway"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.50.50.60">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.700.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003953">
        <property type="entry name" value="FAD-binding_2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036188">
        <property type="entry name" value="FAD/NAD-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037099">
        <property type="entry name" value="Fum_R/Succ_DH_flav-like_C_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015939">
        <property type="entry name" value="Fum_Rdtase/Succ_DH_flav-like_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005288">
        <property type="entry name" value="NadB"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027477">
        <property type="entry name" value="Succ_DH/fumarate_Rdtase_cat_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR42716">
        <property type="entry name" value="PTHR42716"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00890">
        <property type="entry name" value="FAD_binding_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02910">
        <property type="entry name" value="Succ_DH_flav_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46977">
        <property type="entry name" value="SSF46977"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51905">
        <property type="entry name" value="SSF51905"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56425">
        <property type="entry name" value="SSF56425"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00551">
        <property type="entry name" value="nadB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="10" id="KW-0274">FAD</keyword>
    <keyword evidence="5 10" id="KW-0285">Flavoprotein</keyword>
    <keyword evidence="7" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="8 10 13" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="6 10" id="KW-0662">Pyridine nucleotide biosynthesis</keyword>
    <keyword evidence="14" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="FAD_binding_2" evidence="11">
        <location>
            <begin position="7"/>
            <end position="379"/>
        </location>
    </feature>
    <feature type="domain" description="Succ_DH_flav_C" evidence="12">
        <location>
            <begin position="424"/>
            <end position="495"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001974"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00004950"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00008562"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00012173"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022630"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022642"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00023002"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00029281"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="RuleBase" id="RU362049"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="11">
        <source>
            <dbReference type="Pfam" id="PF00890"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="12">
        <source>
            <dbReference type="Pfam" id="PF02910"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="13">
        <source>
            <dbReference type="EMBL" id="ABX34789.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="14">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="499" mass="52279" checksum="2F3B2200B0989CF2" modified="2008-01-15" version="1">MTQPCTDVLIIGAGLAGMAAALSLPPHLRVALLSKGAAEECASAWAQGGIAAVLDAQDSIDEHAADTLVAGAGQCDAQAVRAILAQAPAAIDWLVAHGVPFTRDDTGGLHLTREGGHGRRRIVHAADCTGQAVHAALLRACRERANIDLHEHTSALDLLTVGQPAHCTGALVRLPDGRQQRWHAAHTVLATGGLGQVYPATTNPATATGDGVAMAWRAGCRVGDLEFMQFHPTALQVDGRAAGLVSEALRGEGALLRLPDGTRFMPAHDERAELAPRDIVARAIRHEMDRHGLAFVHLDITHRPRAWLQSHFPGVMALCASHGIDIATQPIPVAPCAHYACGGVLADIDGRTDVDGLRAIGEVARTGLHGANRLASNSLLECVVMGRAAAQAIAQQPAAVPAPAQPTETLQAGAQEQDTAAIAQELRQLMQDCVGIQRSDQGLAQAVQRIAAWRERLAPAAGHALRNQLDVCWLMATAAAARRESCGAHARTDAPALVE</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="78" xmlns="http://uniprot.org/uniprot">
    <accession>A9BVG4</accession>
    <name>A9BVG4_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="10">Acyl-CoA dehydrogenase domain protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="10" type="ordered locus">Daci_2393</name>
    </gene>
    <organism evidence="10 11">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="10 11" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="11">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="11" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="11">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>FAD</name>
            <dbReference type="ChEBI" id="CHEBI:57692"/>
        </cofactor>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the acyl-CoA dehydrogenase family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX35031.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012204313.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_2393"/>
    <dbReference type="PRIDE" id="A9BVG4"/>
    <dbReference type="EnsemblBacteria" id="ABX35031">
        <property type="protein sequence ID" value="ABX35031"/>
        <property type="gene ID" value="Daci_2393"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_2393"/>
    <dbReference type="eggNOG" id="COG1960">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_018204_12_2_4"/>
    <dbReference type="OMA" id="GNEQQRH"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0050660">
        <property type="term" value="F:flavin adenine dinucleotide binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016627">
        <property type="term" value="F:oxidoreductase activity, acting on the CH-CH group of donors"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.540.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.110.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025878">
        <property type="entry name" value="Acyl-CoA_dh-like_C_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020953">
        <property type="entry name" value="Acyl-CoA_DH_N_bac"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006091">
        <property type="entry name" value="Acyl-CoA_Oxase/DH_mid-dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR046373">
        <property type="entry name" value="Acyl-CoA_Oxase/DH_mid-dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036250">
        <property type="entry name" value="AcylCo_DH-like_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009075">
        <property type="entry name" value="AcylCo_DH/oxidase_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013786">
        <property type="entry name" value="AcylCoA_DH/ox_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037069">
        <property type="entry name" value="AcylCoA_DH/ox_N_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009100">
        <property type="entry name" value="AcylCoA_DH/oxidase_NM_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00441">
        <property type="entry name" value="Acyl-CoA_dh_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12806">
        <property type="entry name" value="Acyl-CoA_dh_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02770">
        <property type="entry name" value="Acyl-CoA_dh_M"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02771">
        <property type="entry name" value="Acyl-CoA_dh_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12418">
        <property type="entry name" value="AcylCoA_DH_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47203">
        <property type="entry name" value="SSF47203"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56645">
        <property type="entry name" value="SSF56645"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-0274">FAD</keyword>
    <keyword evidence="3" id="KW-0285">Flavoprotein</keyword>
    <keyword evidence="11" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="AcylCoA_DH_N" evidence="8">
        <location>
            <begin position="2"/>
            <end position="32"/>
        </location>
    </feature>
    <feature type="domain" description="Acyl-CoA_dh_N" evidence="7">
        <location>
            <begin position="77"/>
            <end position="156"/>
        </location>
    </feature>
    <feature type="domain" description="Acyl-CoA_dh_M" evidence="6">
        <location>
            <begin position="161"/>
            <end position="268"/>
        </location>
    </feature>
    <feature type="domain" description="Acyl-CoA_dh_1" evidence="5">
        <location>
            <begin position="283"/>
            <end position="449"/>
        </location>
    </feature>
    <feature type="domain" description="Acyl-CoA_dh_C" evidence="9">
        <location>
            <begin position="467"/>
            <end position="592"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001974"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00009347"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022630"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022827"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="Pfam" id="PF00441"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="Pfam" id="PF02770"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="Pfam" id="PF02771"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="Pfam" id="PF12418"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="9">
        <source>
            <dbReference type="Pfam" id="PF12806"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="EMBL" id="ABX35031.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="596" mass="63315" checksum="82076314A8CAADBD" modified="2008-01-15" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="75" xmlns="http://uniprot.org/uniprot">
    <accession>A9BVK2</accession>
    <name>A9BVK2_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">HpcH/HpaI aldolase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_2431</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX35069.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012204351.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_2431"/>
    <dbReference type="PRIDE" id="A9BVK2"/>
    <dbReference type="EnsemblBacteria" id="ABX35069">
        <property type="protein sequence ID" value="ABX35069"/>
        <property type="gene ID" value="Daci_2431"/>
    </dbReference>
    <dbReference type="GeneID" id="60686801"/>
    <dbReference type="KEGG" id="dac:Daci_2431"/>
    <dbReference type="eggNOG" id="COG2301">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_073837_0_0_4"/>
    <dbReference type="OMA" id="VCDHYAG"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003824">
        <property type="term" value="F:catalytic activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.20.20.60">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005000">
        <property type="entry name" value="Aldolase/citrate-lyase_domain"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR040186">
        <property type="entry name" value="Citramalyl-CoA_lyase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015813">
        <property type="entry name" value="Pyrv/PenolPyrv_Kinase-like_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR040442">
        <property type="entry name" value="Pyrv_Kinase-like_dom_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11105">
        <property type="entry name" value="PTHR11105"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03328">
        <property type="entry name" value="HpcH_HpaI"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51621">
        <property type="entry name" value="SSF51621"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HpcH_HpaI" evidence="1">
        <location>
            <begin position="47"/>
            <end position="261"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF03328"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX35069.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="339" mass="36289" checksum="0FFCA5DB9D847FA7" modified="2008-01-15" version="1">MTAATSTPSRAHPAQVLLDAQGGALHLPVCDHYSGVEVRMRKSLQLQAEMMAEFGTCVFDVTLDCEDGAPVGQEAAHARLVASLARDAAPGARVAARVHAVDHASFAQDLDIIVGEAGDRLCHLMLPKVESVDDVLLAERHLGRLGCRELPLHVLIESPAAVHRAFDIAAHPRVQSISFGLMDFVSAHGGAIPASAMGSAGQFDHPLVVRAKLEIAAACHAHGKVPSHCVVTEFRNPQALQAAATQASRRLGYTRMWSIHPDQIRPILAAFAPQADEVAQAAQILTAAEAADWAPVSVDGVLHDRASYRYFWQLLTRAHQTGQALPPQVQPWFASESLA</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="73" xmlns="http://uniprot.org/uniprot">
    <accession>A9BVT6</accession>
    <name>A9BVT6_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="6">3-hydroxyisobutyrate dehydrogenase</fullName>
            <ecNumber evidence="6">1.1.1.31</ecNumber>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ordered locus">Daci_2811</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="7" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EC" id="1.1.1.31" evidence="6"/>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX35449.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012204659.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_2811"/>
    <dbReference type="PRIDE" id="A9BVT6"/>
    <dbReference type="EnsemblBacteria" id="ABX35449">
        <property type="protein sequence ID" value="ABX35449"/>
        <property type="gene ID" value="Daci_2811"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_2811"/>
    <dbReference type="eggNOG" id="COG2084">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_035117_1_2_4"/>
    <dbReference type="OMA" id="QMFMQAS"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008442">
        <property type="term" value="F:3-hydroxyisobutyrate dehydrogenase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051287">
        <property type="term" value="F:NAD binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0050661">
        <property type="term" value="F:NADP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016054">
        <property type="term" value="P:organic acid catabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.1040.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002204">
        <property type="entry name" value="3-OH-isobutyrate_DH-rel_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008927">
        <property type="entry name" value="6-PGluconate_DH-like_C_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013328">
        <property type="entry name" value="6PGD_dom2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006115">
        <property type="entry name" value="6PGDH_NADP-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015815">
        <property type="entry name" value="HIBADH-related"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036291">
        <property type="entry name" value="NAD(P)-bd_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029154">
        <property type="entry name" value="NADP-bd"/>
    </dbReference>
    <dbReference type="Pfam" id="PF14833">
        <property type="entry name" value="NAD_binding_11"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03446">
        <property type="entry name" value="NAD_binding_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF000103">
        <property type="entry name" value="HIBADH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48179">
        <property type="entry name" value="SSF48179"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51735">
        <property type="entry name" value="SSF51735"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00895">
        <property type="entry name" value="3_HYDROXYISOBUT_DH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0520">NAD</keyword>
    <keyword evidence="1 6" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="NAD_binding_2" evidence="4">
        <location>
            <begin position="19"/>
            <end position="175"/>
        </location>
    </feature>
    <feature type="domain" description="NAD_binding_11" evidence="5">
        <location>
            <begin position="181"/>
            <end position="300"/>
        </location>
    </feature>
    <feature type="active site" evidence="3">
        <location>
            <position position="187"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023002"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023027"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="PIRSR" id="PIRSR000103-1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="Pfam" id="PF03446"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="Pfam" id="PF14833"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="ABX35449.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="314" mass="32008" checksum="3208FABFD0BD106F" modified="2008-01-15" version="1">MSNDTSTPQPAAGPAARCVGVIGLGAMGAGMAQSLRRAGHHVHVHDIRPGAAAAFAAEGGTACATLADMAAACRIIVSVVVNAQQTEAVLFGEGGIAPALQPGSVFVMCSTVDPNWSVALEARLQAQGVHYIDAPISGGAAKAASGQMTMMTAGRPEAYAACEGVLDAMAAKVYRLGDSAGAGSKVKIINQLLAGVHIAAAAEAMALGLREGVDAAALYEVITHSAGNSWMFENRMAHVLAGDYTPLSAVDIFVKDLGLVLDTARHSKFPLPLASTAHQMFMQASTAGHGREDDSAVIKIFPGITLPQAPSESP</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="79" xmlns="http://uniprot.org/uniprot">
    <accession>A9BVV9</accession>
    <name>A9BVV9_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Transcriptional regulator, LysR family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Daci_2834</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="4" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the LysR transcriptional regulatory family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX35472.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012204682.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_2834"/>
    <dbReference type="PRIDE" id="A9BVV9"/>
    <dbReference type="EnsemblBacteria" id="ABX35472">
        <property type="protein sequence ID" value="ABX35472"/>
        <property type="gene ID" value="Daci_2834"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_2834"/>
    <dbReference type="eggNOG" id="COG0583">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_039613_6_0_4"/>
    <dbReference type="OMA" id="PANMPMR"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003700">
        <property type="term" value="F:DNA-binding transcription factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005119">
        <property type="entry name" value="LysR_subst-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000847">
        <property type="entry name" value="Tscrpt_reg_HTH_LysR"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036390">
        <property type="entry name" value="WH_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00126">
        <property type="entry name" value="HTH_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03466">
        <property type="entry name" value="LysR_substrate"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46785">
        <property type="entry name" value="SSF46785"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50931">
        <property type="entry name" value="HTH_LYSR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HTH lysR-type" evidence="2">
        <location>
            <begin position="30"/>
            <end position="87"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00009437"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS50931"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ABX35472.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="329" mass="35087" checksum="3D35F2FB453DAC34" modified="2008-01-15" version="1">MSNDFDDRDGLDDAATPQGRLLYSRLTKHVRLRQLQLLVALQQCGSVVQAAATLHMSQSAATQALAEMERVLDIRLFERHARGIRPTLAGQTLVDTVRGVLAALEEVAESLAAIRRGAAAALRLGAIPAAALAILSPLLARFYAEHPEVHVDVHEDASTRLLSQLLGGGLDAVFCREPALLPGPFAFEPLLADTAVVVAARSHALAGRRDVPLQALTGARWVLPTANIAVRGIFEAEVLQALPDAPWFPVSTVSLPILEGLLSQPGAVALVPLSIAPGLQTHARVCRLDVRLTGRLAPLGVVCRRDQAPALLTEMLSLCRQMLPAPPAR</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="34" xmlns="http://uniprot.org/uniprot">
    <accession>A9BW54</accession>
    <name>A9BW54_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Daci_3232</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="2" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX35870.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012205070.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="PRIDE" id="A9BW54"/>
    <dbReference type="EnsemblBacteria" id="ABX35870">
        <property type="protein sequence ID" value="ABX35870"/>
        <property type="gene ID" value="Daci_3232"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_3232"/>
    <dbReference type="HOGENOM" id="CLU_2583939_0_0_4"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ABX35870.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="80" mass="8952" checksum="424782DA873A86BD" modified="2008-01-15" version="1">MSAAREVWQSYDCPVQLTDMDLFDEEMVFKGQAFRCSWCGGNHVAGFGVKVETFVRVGEDTTYPDLPETAEALQRLKDGA</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2021-06-02" version="43" xmlns="http://uniprot.org/uniprot">
    <accession>A9BW65</accession>
    <name>A9BW65_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Daci_3243</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="2" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX35881.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012205081.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_3243"/>
    <dbReference type="EnsemblBacteria" id="ABX35881">
        <property type="protein sequence ID" value="ABX35881"/>
        <property type="gene ID" value="Daci_3243"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_3243"/>
    <dbReference type="eggNOG" id="ENOG5032Z46">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_1851880_0_0_4"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ABX35881.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="138" mass="15096" checksum="A97CF5CB172EA9A3" modified="2008-01-15" version="1">MALIVAPAEGYDSLVTLAEAVVYMANYGHVWPADESAQEIALRRATQYILSNYALDPQYLDPVAQKVKDACCEAAWRAAKGELFQDTDGRIMTERTVDVITTKWAEGQQGGQMRFAVIDALLRGLTTGGAMNIKLVRG</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="81" xmlns="http://uniprot.org/uniprot">
    <accession>A9BW87</accession>
    <name>A9BW87_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="4">Peptide chain release factor 2</fullName>
            <shortName evidence="4">RF-2</shortName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="4" type="primary">prfB</name>
        <name evidence="7" type="ordered locus">Daci_3265</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="8" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="4">Peptide chain release factor 2 directs the termination of translation in response to the peptide chain termination codons UGA and UAA.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="4">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="PTM">
        <text evidence="4">Methylated by PrmC. Methylation increases the termination efficiency of RF2.</text>
    </comment>
    <comment type="similarity">
        <text evidence="1 4">Belongs to the prokaryotic/mitochondrial release factor family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX35903.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_3265"/>
    <dbReference type="PRIDE" id="A9BW87"/>
    <dbReference type="EnsemblBacteria" id="ABX35903">
        <property type="protein sequence ID" value="ABX35903"/>
        <property type="gene ID" value="Daci_3265"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_3265"/>
    <dbReference type="eggNOG" id="COG1186">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_036856_6_0_4"/>
    <dbReference type="OMA" id="YVFHPYQ"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016149">
        <property type="term" value="F:translation release factor activity, codon specific"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00094">
        <property type="entry name" value="Rel_fac_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005139">
        <property type="entry name" value="PCRF"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000352">
        <property type="entry name" value="Pep_chain_release_fac_I"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045853">
        <property type="entry name" value="Pep_chain_release_fac_I_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004374">
        <property type="entry name" value="PrfB"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03462">
        <property type="entry name" value="PCRF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00472">
        <property type="entry name" value="RF-1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00937">
        <property type="entry name" value="PCRF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF75620">
        <property type="entry name" value="SSF75620"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00020">
        <property type="entry name" value="prfB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00745">
        <property type="entry name" value="RF_PROK_I"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="2 4" id="KW-0488">Methylation</keyword>
    <keyword evidence="3 4" id="KW-0648">Protein biosynthesis</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="RF_PROK_I" evidence="6">
        <location>
            <begin position="266"/>
            <end position="282"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="5">
        <location>
            <begin position="1"/>
            <end position="31"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="5">
        <location>
            <begin position="17"/>
            <end position="31"/>
        </location>
    </feature>
    <feature type="modified residue" description="N5-methylglutamine" evidence="4">
        <location>
            <position position="273"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00010835"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022481"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022917"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00094"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="PROSITE" id="PS00745"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="ABX35903.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="386" mass="43393" checksum="EB34B3A3F403B85C" modified="2008-01-15" version="1">MRKSAIRPRTHSSEERNTSWKQNASTSSATPSKICRSVRQIYGGIFDYDAKYERLRTVNASLEDPSVWNDPKKAQELGKEKKLLDGVVLTLQKLTTELADNAELFEMSKEEGDETGLLTIEGETAKLQPLIEELEFRRMFGKEADPLNCFVDIQAGAGGTEACDWAGMLLRQYLKYAERKGFKATVEEETPGDIAGIKSATIHIEGEYAYGLLRTETGVHRLVRKSPFDSSGGRHTSFASLFVYPEIDDSIQIEINPSDVRTDTYRASGAGGQHINKTDSAVRLTHMPTGIVVQCQDGRSQHSNRDVAWQRLRSKLYEHEMQKRMVEQQKLEDTKTDVGWGHQIRSYVLDNSRIKDLRTNVEISATQKVLDGDLDAFIEASLKQGL</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="85" xmlns="http://uniprot.org/uniprot">
    <accession>A9BWL3</accession>
    <name>A9BWL3_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Transcriptional regulator, LacI family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ordered locus">Daci_3909</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="6" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX36540.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012205734.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_3909"/>
    <dbReference type="PRIDE" id="A9BWL3"/>
    <dbReference type="EnsemblBacteria" id="ABX36540">
        <property type="protein sequence ID" value="ABX36540"/>
        <property type="gene ID" value="Daci_3909"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_3909"/>
    <dbReference type="eggNOG" id="COG1609">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_037628_6_3_4"/>
    <dbReference type="OMA" id="SHCVWSD"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006355">
        <property type="term" value="P:regulation of transcription, DNA-templated"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd01392">
        <property type="entry name" value="HTH_LacI"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.260.40">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000843">
        <property type="entry name" value="HTH_LacI"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR046335">
        <property type="entry name" value="LacI/GalR-like_sensor"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010982">
        <property type="entry name" value="Lambda_DNA-bd_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR028082">
        <property type="entry name" value="Peripla_BP_I"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00356">
        <property type="entry name" value="LacI"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13377">
        <property type="entry name" value="Peripla_BP_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00354">
        <property type="entry name" value="HTH_LACI"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47413">
        <property type="entry name" value="SSF47413"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53822">
        <property type="entry name" value="SSF53822"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50932">
        <property type="entry name" value="HTH_LACI_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0804">Transcription</keyword>
    <keyword evidence="1" id="KW-0805">Transcription regulation</keyword>
    <feature type="domain" description="HTH lacI-type" evidence="4">
        <location>
            <begin position="12"/>
            <end position="66"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023015"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023163"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="PROSITE" id="PS50932"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="ABX36540.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="344" mass="36364" checksum="7CE3B5D0FC6D6207" modified="2008-01-15" version="1">MTLRTLRNATAPTLKDLARIAGVSPITASRALHRPELVAEATRLRVAQAVEQSGYVPNSLAGGLTSRQTRLVAAIVPSVGHSLFSDMLDALIHTLAAQRYETTLGISSYDPEHEETWLAAMLSRRPDGIVLTGTEHTARTRRLLVNADVPVVELWDYQPHPLDMVVGFSQEDAGRAAFRHLAACGYRRPAILRADDSRAARRALGFTRAAAEAGAPVPAQIVFSEAIPQSGRGRDALNALRAQAPEADAVFCSSDALAQGVLSHAHALGLRMPEEFGVLGFGDQALALDAWPALSTVRVDGAAIGRLGAEALIARMAGGVAAAAQDVGFEVVGRGSTRGHQAAR</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="52" xmlns="http://uniprot.org/uniprot">
    <accession>A9BWL4</accession>
    <name>A9BWL4_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ordered locus">Daci_3910</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="5" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Periplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the UPF0065 (bug) family.</text>
    </comment>
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        <property type="protein sequence ID" value="ABX36541.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012205735.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_3910"/>
    <dbReference type="PRIDE" id="A9BWL4"/>
    <dbReference type="EnsemblBacteria" id="ABX36541">
        <property type="protein sequence ID" value="ABX36541"/>
        <property type="gene ID" value="Daci_3910"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_3910"/>
    <dbReference type="eggNOG" id="COG3181">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_045683_0_0_4"/>
    <dbReference type="OMA" id="FTHIAML"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0042597">
        <property type="term" value="C:periplasmic space"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.190.150">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005064">
        <property type="entry name" value="BUG"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR042100">
        <property type="entry name" value="Bug_dom1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006311">
        <property type="entry name" value="TAT_signal"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR42928">
        <property type="entry name" value="PTHR42928"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03401">
        <property type="entry name" value="TctC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF017082">
        <property type="entry name" value="YflP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51318">
        <property type="entry name" value="TAT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="3">
        <location>
            <begin position="1"/>
            <end position="33"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5002733129" evidence="3">
        <location>
            <begin position="34"/>
            <end position="332"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004418"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00006987"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="ABX36541.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="332" mass="34468" checksum="7143871E0C2D8B0A" modified="2008-01-15" version="1">MRPSLSNRRSAMARLLAAALAPASMLTPAHAQAAWPVRPITLVIPFPPGGQTDVVGRLVGERLSQRLGQPVVVENRPGVNGSLASEAVARARADGYTLVIGGPGTHAINQLVNSNVKYDARRDFTHIAMLGRVPMLLLASPRLKVASVADVVALAQASPGTVNVALTGIGSSSHVTTELLRQAAGVSFNNVPYKGDVPAMTDVMGGQADLLFVPATSAVGFAQAGKLRALAVAGERRLAALPDVPTMAEAGQPQVVNYSWTSLAGPPGMPADVVERLNQACQSLLAEPEVVARLAAMSNEPTPGLPGQAASFIAAEVARWSEVVRKGNIQVQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2021-06-02" version="63" xmlns="http://uniprot.org/uniprot">
    <accession>A9BWL9</accession>
    <name>A9BWL9_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ordered locus">Daci_3915</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="6" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX36546.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012205740.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_3915"/>
    <dbReference type="EnsemblBacteria" id="ABX36546">
        <property type="protein sequence ID" value="ABX36546"/>
        <property type="gene ID" value="Daci_3915"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_3915"/>
    <dbReference type="eggNOG" id="COG0697">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_033863_15_1_4"/>
    <dbReference type="OMA" id="MFHSKSM"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000620">
        <property type="entry name" value="EamA_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00892">
        <property type="entry name" value="EamA"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0472">Membrane</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0732">Signal</keyword>
    <keyword evidence="2" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="2" id="KW-1133">Transmembrane helix</keyword>
    <feature type="signal peptide" evidence="3">
        <location>
            <begin position="1"/>
            <end position="25"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5002735166" evidence="3">
        <location>
            <begin position="26"/>
            <end position="316"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="63"/>
            <end position="82"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="94"/>
            <end position="114"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="120"/>
            <end position="142"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="154"/>
            <end position="175"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="181"/>
            <end position="200"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="212"/>
            <end position="232"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="238"/>
            <end position="257"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="269"/>
            <end position="288"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="2">
        <location>
            <begin position="294"/>
            <end position="310"/>
        </location>
    </feature>
    <feature type="domain" description="EamA" evidence="4">
        <location>
            <begin position="33"/>
            <end position="164"/>
        </location>
    </feature>
    <feature type="domain" description="EamA" evidence="4">
        <location>
            <begin position="181"/>
            <end position="310"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="26"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="Pfam" id="PF00892"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="ABX36546.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="316" mass="33330" checksum="4BE8FA06ABD60787" modified="2008-01-15" version="1">MQDRTHSLQAASVASTAPAPTPAQAAPTAQETRGQWLMIAGGVLLGTVGIFVEEARQHPLVTVLFRCAFGALALLAWGLATGRVRELRVRGRSWPVVVATGLLMVLNWALFFAAIPLTSIGVATIVFHIQPVWIMLFGTLVLREAVAPRQVAAMLAALLGLVLATGLLGGDAAAWGPDHVSGLLMCLAGSLCYAAVTILAKTEKVVTPFALAWWQCAVGTVLLLWVPLVHGWPQAPSSWAWLAGLGVLHTGLAYAILFAGMARLTLGRIAVLQYVYPLTAIVLDWAVYGRALGAVQLAGVGLMAGALLVVKARQLR</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="67" xmlns="http://uniprot.org/uniprot">
    <accession>A9BWN4</accession>
    <name>A9BWN4_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Aldehyde oxidase and xanthine dehydrogenase molybdopterin binding</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Daci_3930</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
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            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="4" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX36561.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012205755.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_3930"/>
    <dbReference type="PRIDE" id="A9BWN4"/>
    <dbReference type="EnsemblBacteria" id="ABX36561">
        <property type="protein sequence ID" value="ABX36561"/>
        <property type="gene ID" value="Daci_3930"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_3930"/>
    <dbReference type="eggNOG" id="COG1529">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_013917_0_0_4"/>
    <dbReference type="OMA" id="GVRHQVH"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016491">
        <property type="term" value="F:oxidoreductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000674">
        <property type="entry name" value="Ald_Oxase/Xan_DH_a/b"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036856">
        <property type="entry name" value="Ald_Oxase/Xan_DH_a/b_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008274">
        <property type="entry name" value="AldOxase/xan_DH_Mopterin-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037165">
        <property type="entry name" value="AldOxase/xan_DH_Mopterin-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012368">
        <property type="entry name" value="OxRdtase_Mopterin-bd_su_IorB"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006311">
        <property type="entry name" value="TAT_signal"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02738">
        <property type="entry name" value="Ald_Xan_dh_C2"/>
        <property type="match status" value="3"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF036389">
        <property type="entry name" value="IOR_B"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM01008">
        <property type="entry name" value="Ald_Xan_dh_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54665">
        <property type="entry name" value="SSF54665"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56003">
        <property type="entry name" value="SSF56003"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51318">
        <property type="entry name" value="TAT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="1">
        <location>
            <begin position="1"/>
            <end position="28"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5002733131" evidence="1">
        <location>
            <begin position="29"/>
            <end position="766"/>
        </location>
    </feature>
    <feature type="domain" description="Ald_Xan_dh_C" evidence="2">
        <location>
            <begin position="211"/>
            <end position="297"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="SMART" id="SM01008"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ABX36561.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="766" mass="81993" checksum="FE9A9630D34D834A" modified="2008-01-15" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="76" xmlns="http://uniprot.org/uniprot">
    <accession>A9BWY0</accession>
    <name>A9BWY0_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="8">ABC transporter related</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="8" type="ordered locus">Daci_4334</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="9" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX36965.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012206137.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_4334"/>
    <dbReference type="PRIDE" id="A9BWY0"/>
    <dbReference type="EnsemblBacteria" id="ABX36965">
        <property type="protein sequence ID" value="ABX36965"/>
        <property type="gene ID" value="Daci_4334"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_4334"/>
    <dbReference type="eggNOG" id="COG0411">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_000604_1_2_4"/>
    <dbReference type="OMA" id="HKYRNTE"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003593">
        <property type="entry name" value="AAA+_ATPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003439">
        <property type="entry name" value="ABC_transporter-like_ATP-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR032823">
        <property type="entry name" value="BCA_ABC_TP_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00005">
        <property type="entry name" value="ABC_tran"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12399">
        <property type="entry name" value="BCA_ABC_TP_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00382">
        <property type="entry name" value="AAA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50893">
        <property type="entry name" value="ABC_TRANSPORTER_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3 6" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="1" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="5" id="KW-0472">Membrane</keyword>
    <keyword evidence="2 6" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4" id="KW-1278">Translocase</keyword>
    <feature type="domain" description="ABC transporter" evidence="7">
        <location>
            <begin position="6"/>
            <end position="254"/>
        </location>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <begin position="38"/>
            <end position="45"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022967"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00434"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="PROSITE" id="PS50893"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="ABX36965.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="255" mass="28393" checksum="4DB6D3159410AD49" modified="2008-01-15" version="1">MSEYLLEVKDLCMRFGGLLAVDHVGFNVRPQEVFAIIGPNGAGKTTVFNCISGFYQPSSGSVTLDGSAIEGRSSHHVANHGVVRTFQNVRLFKSMTVLENLLVAQHRRSGVNLLSGLFNTASYRRSEEEKIESALHWLDVMGLREFVNREAGNLAYGHQRRLEIARCMITKPRVLMLDEPAAGLNPQEKKDLQGLIDQLRRQYGIAVLLIEHDMGLVMGVSERILVMEYGKPIAMGLPDAIRNDERVIKAYLGEA</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="65" xmlns="http://uniprot.org/uniprot">
    <accession>A9BX42</accession>
    <name>A9BX42_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Diguanylate cyclase/phosphodiesterase with GAF sensor</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_4396</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX37027.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012206199.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_4396"/>
    <dbReference type="PRIDE" id="A9BX42"/>
    <dbReference type="EnsemblBacteria" id="ABX37027">
        <property type="protein sequence ID" value="ABX37027"/>
        <property type="gene ID" value="Daci_4396"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_4396"/>
    <dbReference type="eggNOG" id="COG2199">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="eggNOG" id="COG2200">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="eggNOG" id="COG2203">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_000445_70_34_4"/>
    <dbReference type="OMA" id="DFLASWH"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="CDD" id="cd01948">
        <property type="entry name" value="EAL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.20.20.450">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.450.40">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.70.270">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001633">
        <property type="entry name" value="EAL_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035919">
        <property type="entry name" value="EAL_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003018">
        <property type="entry name" value="GAF"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029016">
        <property type="entry name" value="GAF-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000160">
        <property type="entry name" value="GGDEF_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029787">
        <property type="entry name" value="Nucleotide_cyclase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043128">
        <property type="entry name" value="Rev_trsase/Diguanyl_cyclase"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00563">
        <property type="entry name" value="EAL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01590">
        <property type="entry name" value="GAF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00990">
        <property type="entry name" value="GGDEF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00052">
        <property type="entry name" value="EAL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00065">
        <property type="entry name" value="GAF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00267">
        <property type="entry name" value="GGDEF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF141868">
        <property type="entry name" value="SSF141868"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55073">
        <property type="entry name" value="SSF55073"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50883">
        <property type="entry name" value="EAL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="EAL" evidence="1">
        <location>
            <begin position="336"/>
            <end position="588"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS50883"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX37027.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="594" mass="66882" checksum="5941F2BBFD3A6423" modified="2008-01-15" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="61" xmlns="http://uniprot.org/uniprot">
    <accession>A9BXB2</accession>
    <name>A9BXB2_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">Y1_Tnp domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Daci_5559</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="4" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX38188.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012207357.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_5559"/>
    <dbReference type="PRIDE" id="A9BXB2"/>
    <dbReference type="EnsemblBacteria" id="ABX38188">
        <property type="protein sequence ID" value="ABX38188"/>
        <property type="gene ID" value="Daci_5559"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_5559"/>
    <dbReference type="eggNOG" id="COG1943">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_068226_1_2_4"/>
    <dbReference type="OMA" id="YRHHIGL"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004803">
        <property type="term" value="F:transposase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006313">
        <property type="term" value="P:transposition, DNA-mediated"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.70.1290">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002686">
        <property type="entry name" value="Transposase_17"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036515">
        <property type="entry name" value="Transposase_17_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01797">
        <property type="entry name" value="Y1_Tnp"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM01321">
        <property type="entry name" value="Y1_Tnp"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF143422">
        <property type="entry name" value="SSF143422"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Y1_Tnp" evidence="2">
        <location>
            <begin position="9"/>
            <end position="123"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="211"/>
            <end position="236"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="SMART" id="SM01321"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ABX38188.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="236" mass="26673" checksum="CD023B718E4CCB27" modified="2008-01-15" version="1">MARLPRLTLADLPHHIIQLGNNGGDIFIDAQDRETMLGLLREMARSCELAVHAYVLLPSQFHLLATPRTGDGLPKFMQAVGRRYVRYFNDRHGRSGTLWEGRYRGTVLQPSWLLPTMVFMDDSPVRAGLVQRPADWPWSSYAHNAGLRSDALIQPHAVFWELGNTPFARDAAYVEAVEEGVGTDDAERISQSALRGWALGDEQFIADLQQRTERRVTRQRAGRPPGRTNERTTTVR</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="81" xmlns="http://uniprot.org/uniprot">
    <accession>A9BXJ1</accession>
    <name>A9BXJ1_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Transcriptional regulator, LysR family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Daci_5638</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="4" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the LysR transcriptional regulatory family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX38267.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012207436.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_5638"/>
    <dbReference type="PRIDE" id="A9BXJ1"/>
    <dbReference type="EnsemblBacteria" id="ABX38267">
        <property type="protein sequence ID" value="ABX38267"/>
        <property type="gene ID" value="Daci_5638"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_5638"/>
    <dbReference type="eggNOG" id="COG0583">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_039613_16_0_4"/>
    <dbReference type="OMA" id="VYPNRRH"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003700">
        <property type="term" value="F:DNA-binding transcription factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005119">
        <property type="entry name" value="LysR_subst-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000847">
        <property type="entry name" value="Tscrpt_reg_HTH_LysR"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036390">
        <property type="entry name" value="WH_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00126">
        <property type="entry name" value="HTH_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03466">
        <property type="entry name" value="LysR_substrate"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46785">
        <property type="entry name" value="SSF46785"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50931">
        <property type="entry name" value="HTH_LYSR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HTH lysR-type" evidence="2">
        <location>
            <begin position="1"/>
            <end position="59"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00009437"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS50931"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ABX38267.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="302" mass="33556" checksum="B989E95243C299DC" modified="2008-01-15" version="1">MDRFLLMSCFARAVETGSFSAAGRDLGLGQPNVSRYVAALEDHLQARLLHRSTRKLSLTPEGERYYADIRRILDAVDESESSFRNNVEPSGLLRVACPTALAHAFVLPHVPTFLERYPQLTLDLQFNDRYVDLVNEGTEIAIRIGHLEDSSLRARRLGWYDRVFVASKDYLAKRGVPQTPDDLRDHDCIIYTLLSSGAIWRFRDADIPVSGRLRVNSPDAVSAAVTAGLGVAQGPAWLFEGGLNSGRLQFILTDHAAPPVPVQIVYVANRLLPTRAVVFMDFMGELFSRIPALNGRTPLPNL</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="62" xmlns="http://uniprot.org/uniprot">
    <accession>A9BXK6</accession>
    <name>A9BXK6_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="6">Efflux transporter, RND family, MFP subunit</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ordered locus">Daci_5654</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="7" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX38282.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012207451.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_5654"/>
    <dbReference type="EnsemblBacteria" id="ABX38282">
        <property type="protein sequence ID" value="ABX38282"/>
        <property type="gene ID" value="Daci_5654"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_5654"/>
    <dbReference type="eggNOG" id="COG0845">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_018816_1_0_4"/>
    <dbReference type="OMA" id="MRLDPID"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016020">
        <property type="term" value="C:membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0022857">
        <property type="term" value="F:transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR032317">
        <property type="entry name" value="HlyD_D23"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006143">
        <property type="entry name" value="RND_pump_MFP"/>
    </dbReference>
    <dbReference type="Pfam" id="PF16576">
        <property type="entry name" value="HlyD_D23"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01730">
        <property type="entry name" value="RND_mfp"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="4">
        <location>
            <begin position="1"/>
            <end position="20"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5002736136" evidence="4">
        <location>
            <begin position="21"/>
            <end position="395"/>
        </location>
    </feature>
    <feature type="domain" description="HlyD_D23" evidence="5">
        <location>
            <begin position="64"/>
            <end position="261"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="3">
        <location>
            <begin position="372"/>
            <end position="395"/>
        </location>
    </feature>
    <feature type="coiled-coil region" evidence="2">
        <location>
            <begin position="101"/>
            <end position="166"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00009477"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="Pfam" id="PF16576"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="ABX38282.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="395" mass="40556" checksum="7707791EC60DDF50" modified="2008-01-15" version="1">MLRHCHLSIAAVGALSLALAACGKSPPPDPRTQPPLVRTTLVAPGNAPERVFTGTIAARVQGDLGFRVAGKVLERLVDTGQTVRRGQALLRLDPVDLKLAANAQQEAVAAARARAQQASDEEQRYRDLQGTGAVSALAHEQIKAAADSARAQLRAAEAQAAAALNASRYAELLADADGIVMETLAEPGQVVSAGQVVVRLAHAGRREAVVQLPETLRPALGSAAQARLFGREDVVIPARLRQLSDVADRATRTFEARYVLDAGAAASAPLGSTVTLRIGGTATATATATSTSTSTSTATAGKATLQVPIGAILDEGKGAAVWVVQGDQVRRQPVTVVQVQDGNAQVVGALGLGERIVALGAHLLSEGAQVRLESEAPSTATTSTASSVSTGASRE</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="35" xmlns="http://uniprot.org/uniprot">
    <accession>A9BYP8</accession>
    <name>A9BYP8_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Daci_1951</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="2" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX34591.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012203876.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_1951"/>
    <dbReference type="PRIDE" id="A9BYP8"/>
    <dbReference type="EnsemblBacteria" id="ABX34591">
        <property type="protein sequence ID" value="ABX34591"/>
        <property type="gene ID" value="Daci_1951"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_1951"/>
    <dbReference type="HOGENOM" id="CLU_782381_0_0_4"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ABX34591.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="354" mass="36661" checksum="C146380A67B20817" modified="2008-01-15" version="1">MTVETATYINQLNPSWPLQSDIVREGAGHIRTTKSTLQASFPNVAGAVSASHVQLSYVTGVTSAIQPQIDSKGAITGQTWTGPHVFSGSITVPTLAQGTSTVGAASTAFVQNEWATRLPNYTGPITASTTELNRVAGVTSGIQTQIDGKGAINGQTWSGTHSFPSTTTVGPLTPTKQGYLATVTSDVQVQIDSKGAINGQIWSGAHDFRSGSVLAPTRTTGDSTQNVATTAFVAATALSSSLPGQTGNAGKFVTTDGSAASWDWAQLGTVVHTAGGVLQVGKLNILNCTGQAFTLPASFTDKDPLGFVHVDTASINTIDWGTRNLFGRQPGVMTLSGNNVRGYVRWNSATGGFV</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2020-08-12" version="40" xmlns="http://uniprot.org/uniprot">
    <accession>A9BZ97</accession>
    <name>A9BZ97_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_2559</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX35197.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_2559"/>
    <dbReference type="EnsemblBacteria" id="ABX35197">
        <property type="protein sequence ID" value="ABX35197"/>
        <property type="gene ID" value="Daci_2559"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_2559"/>
    <dbReference type="eggNOG" id="ENOG5033BUX">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_208655_0_0_4"/>
    <dbReference type="OMA" id="KLAVAFW"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="6"/>
            <end position="24"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX35197.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="57" mass="6144" checksum="A04132C65533B49E" modified="2008-01-15" version="1">MTQQNTLRAVFWAVLVLFLAWDHLHSPPVDLRFEAPLIAAGSGKATQGGHCSMPAGK</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="67" xmlns="http://uniprot.org/uniprot">
    <accession>A9BZA1</accession>
    <name>A9BZA1_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="1">HAD-superfamily hydrolase, subfamily IA, variant 3</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Daci_2563</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="2" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX35201.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012204480.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_2563"/>
    <dbReference type="PRIDE" id="A9BZA1"/>
    <dbReference type="EnsemblBacteria" id="ABX35201">
        <property type="protein sequence ID" value="ABX35201"/>
        <property type="gene ID" value="Daci_2563"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_2563"/>
    <dbReference type="eggNOG" id="COG1011">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_045011_8_2_4"/>
    <dbReference type="OMA" id="PQETHDT"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016787">
        <property type="term" value="F:hydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.1000">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036412">
        <property type="entry name" value="HAD-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006439">
        <property type="entry name" value="HAD-SF_hydro_IA"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023214">
        <property type="entry name" value="HAD_sf"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00413">
        <property type="entry name" value="HADHALOGNASE"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56784">
        <property type="entry name" value="SSF56784"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01549">
        <property type="entry name" value="HAD-SF-IA-v1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01509">
        <property type="entry name" value="HAD-SF-IA-v3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ABX35201.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="256" mass="27429" checksum="CEAC352ACB481F00" modified="2008-01-15" version="1">MSQATIAPLAESSLAPALAALQQLRRSGRIRAISIDLDDTLWPVWPAISRAEQVLLEWLHAHAPTTAAALRDVATLRAIRVQIERDRPDLAHDLSGLRRESIRLALQRNGDDGALAEPAFDLFFAERQRVDLYEDALPALQFLAARWPVVALSNGNASVHVVGIGEHFHAALSATKAGMAKPDVRFFHAAAAAAGVAPDEVLHIGDDARLDALGAMDAGMHAVWLNRTGVAWPHEGSTPHVTVASLAQLCQGLADS</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2020-12-02" version="40" xmlns="http://uniprot.org/uniprot">
    <accession>A9BZC2</accession>
    <name>A9BZC2_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Type 4 fimbrial biogenesis protein PilX</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Daci_2884</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="4" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX35522.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_2884"/>
    <dbReference type="EnsemblBacteria" id="ABX35522">
        <property type="protein sequence ID" value="ABX35522"/>
        <property type="gene ID" value="Daci_2884"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_2884"/>
    <dbReference type="eggNOG" id="COG4726">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_1495010_0_0_4"/>
    <dbReference type="OMA" id="RYITTAC"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025746">
        <property type="entry name" value="PilX_N_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF14341">
        <property type="entry name" value="PilX_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="12"/>
            <end position="35"/>
        </location>
    </feature>
    <feature type="domain" description="PilX_N" evidence="2">
        <location>
            <begin position="10"/>
            <end position="59"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF14341"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ABX35522.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="185" mass="19550" checksum="4350838B5215B682" modified="2008-01-15" version="1">MSCVLHGRQRGNALLVSMIMLLLVLLLAVVGMRVATLEARIAANMVDSQRLYETADGTLREGERKLLEHAVALKPCNGAGTPVAEGSGIPCSVSDVRTDSIGLGTDFQTTKAKAAGFQKPDGYWYPRYITTACPKSGSATSALDAPATGCTDFYEVNAQATEKSQAQACGADALCLRSSVNMFIK</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="60" xmlns="http://uniprot.org/uniprot">
    <accession>A9BZL6</accession>
    <name>A9BZL6_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Aminoglycoside phosphotransferase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_3286</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX35924.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012205124.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_3286"/>
    <dbReference type="PRIDE" id="A9BZL6"/>
    <dbReference type="EnsemblBacteria" id="ABX35924">
        <property type="protein sequence ID" value="ABX35924"/>
        <property type="gene ID" value="Daci_3286"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_3286"/>
    <dbReference type="eggNOG" id="COG3173">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_007526_0_1_4"/>
    <dbReference type="OMA" id="FVDYYAE"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016740">
        <property type="term" value="F:transferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd05154">
        <property type="entry name" value="ACAD10_11_N-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041726">
        <property type="entry name" value="ACAD10_11_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002575">
        <property type="entry name" value="Aminoglycoside_PTrfase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011009">
        <property type="entry name" value="Kinase-like_dom_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01636">
        <property type="entry name" value="APH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56112">
        <property type="entry name" value="SSF56112"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="APH" evidence="1">
        <location>
            <begin position="41"/>
            <end position="295"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF01636"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX35924.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="361" mass="40219" checksum="2942A890869C224F" modified="2008-01-15" version="1">MSTFDHFVGTRPVSDQHAFDVPALTAWMQGHVQGFAGPLQVEMFKGGQSNPTYKLITPGRSYVMRSKPGPVAKLLPSAHAIEREFRVMKGLAGTDVPVPHMYALCEDESIIGRAFYIMECMEGRVLWDQSLPGMEPAQRAAIYDEMNRVISALHTVDFAAQGLADYGKSGNYFERQIGRWSKQYVASVTQPIPEMDQLMQWLPAHMPASALDASRVSIVHGDFRLDNLMFHPTEPRVIAVLDWELSTLGHPLADFSYHCMSWHIPATLGRGIAGKDLAALGIPDEEEYIRRYCERTGLKDVDTLRADWNFYMAYNMFRIAAILQGIAKRVEAGTASSAQAKASGDTARPMAELAWSFAQRS</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="68" xmlns="http://uniprot.org/uniprot">
    <accession>A9BZU5</accession>
    <name>A9BZU5_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="7">Bcr/CflA family efflux transporter</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="10" type="ordered locus">Daci_3365</name>
    </gene>
    <organism evidence="10 11">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="10 11" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="11">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="11" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="11">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="7">Cell inner membrane</location>
            <topology evidence="7">Multi-pass membrane protein</topology>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2 7">Belongs to the major facilitator superfamily. Bcr/CmlA family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX36003.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_3365"/>
    <dbReference type="PRIDE" id="A9BZU5"/>
    <dbReference type="EnsemblBacteria" id="ABX36003">
        <property type="protein sequence ID" value="ABX36003"/>
        <property type="gene ID" value="Daci_3365"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_3365"/>
    <dbReference type="eggNOG" id="COG2814">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_001265_47_1_4"/>
    <dbReference type="OMA" id="ITVIIME"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0042910">
        <property type="term" value="F:xenobiotic transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:1990961">
        <property type="term" value="P:xenobiotic detoxification by transmembrane export across the plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004812">
        <property type="entry name" value="Efflux_drug-R_Bcr/CmlA"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011701">
        <property type="entry name" value="MFS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020846">
        <property type="entry name" value="MFS_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036259">
        <property type="entry name" value="MFS_trans_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07690">
        <property type="entry name" value="MFS_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF103473">
        <property type="entry name" value="SSF103473"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00710">
        <property type="entry name" value="efflux_Bcr_CflA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50850">
        <property type="entry name" value="MFS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="7" id="KW-0997">Cell inner membrane</keyword>
    <keyword evidence="7" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="6 7" id="KW-0472">Membrane</keyword>
    <keyword evidence="11" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4 7" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="5 7" id="KW-1133">Transmembrane helix</keyword>
    <keyword evidence="3 7" id="KW-0813">Transport</keyword>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="38"/>
            <end position="56"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="76"/>
            <end position="95"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="107"/>
            <end position="126"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="132"/>
            <end position="153"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="165"/>
            <end position="190"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="196"/>
            <end position="215"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="243"/>
            <end position="263"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="283"/>
            <end position="302"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="314"/>
            <end position="332"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="338"/>
            <end position="363"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="375"/>
            <end position="395"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="401"/>
            <end position="422"/>
        </location>
    </feature>
    <feature type="domain" description="MFS" evidence="9">
        <location>
            <begin position="38"/>
            <end position="426"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="8">
        <location>
            <begin position="1"/>
            <end position="32"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00006236"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022448"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="RuleBase" id="RU365088"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="9">
        <source>
            <dbReference type="PROSITE" id="PS50850"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="EMBL" id="ABX36003.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="436" mass="44641" checksum="6AA32710E3CC440B" modified="2008-01-15" version="1">MGRKCEQPPAAPRACRHNGASMSASMPSSSPASPDSHTLRLVLILGLLSAIGPFAIDMYLPALPQIGSSLGAQVGAVQASLTAFFLSLGVGQLLYGPVSDMVGRKPPLYFGLTVFALASVGCAMATSIETLVVLRFIQGLGAAAGMAVPRAVVRDLHTGHAAARMMSLLMLVFSVSPILAPLAGSGVIAVSSWRGVFWAVAVAAVIGLVAVFMGLKETRGAAARLDSSVAGALRAYGVLLRDWHYLGLVFIGGCAMAGFFVYLAGSPFVLINYYGLSSTQYSLAFGLNAIAFIGAAQFTGWLGQRFGLVRVVKVAATGSGLVMLSLLAYYLLGGERLAVLIGLYFVASALMGLVIPTTSVLALEEHGAIAGTASALLGTLQMLSGAAAMQIVGLFSTGKPLPMVVGMATGALIGVALAWITLGGARAHRVGAKGHS</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="67" xmlns="http://uniprot.org/uniprot">
    <accession>A9BZU8</accession>
    <name>A9BZU8_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="4">Efflux pump membrane transporter</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="6" type="ordered locus">Daci_3368</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="7" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="2 4">Cell inner membrane</location>
            <topology evidence="2 4">Multi-pass membrane protein</topology>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="3 4">Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.</text>
    </comment>
    <comment type="caution">
        <text evidence="4">Lacks conserved residue(s) required for the propagation of feature annotation.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX36006.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012205206.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_3368"/>
    <dbReference type="PRIDE" id="A9BZU8"/>
    <dbReference type="EnsemblBacteria" id="ABX36006">
        <property type="protein sequence ID" value="ABX36006"/>
        <property type="gene ID" value="Daci_3368"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_3368"/>
    <dbReference type="eggNOG" id="COG0841">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_002755_1_1_4"/>
    <dbReference type="OMA" id="ITRHNMY"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015562">
        <property type="term" value="F:efflux transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0042908">
        <property type="term" value="P:xenobiotic transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.2090.10">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027463">
        <property type="entry name" value="AcrB_DN_DC_subdom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001036">
        <property type="entry name" value="Acrflvin-R"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004764">
        <property type="entry name" value="HAE1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR32063">
        <property type="entry name" value="PTHR32063"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00873">
        <property type="entry name" value="ACR_tran"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00702">
        <property type="entry name" value="ACRIFLAVINRP"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF82714">
        <property type="entry name" value="SSF82714"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00915">
        <property type="entry name" value="2A0602"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-0997">Cell inner membrane</keyword>
    <keyword evidence="4" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="4" id="KW-0472">Membrane</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="4" id="KW-1133">Transmembrane helix</keyword>
    <keyword evidence="4" id="KW-0813">Transport</keyword>
    <feature type="transmembrane region" description="Helical" evidence="4">
        <location>
            <begin position="12"/>
            <end position="32"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="4">
        <location>
            <begin position="340"/>
            <end position="359"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="4">
        <location>
            <begin position="366"/>
            <end position="390"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="4">
        <location>
            <begin position="438"/>
            <end position="460"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="4">
        <location>
            <begin position="466"/>
            <end position="488"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="4">
        <location>
            <begin position="551"/>
            <end position="569"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="4">
        <location>
            <begin position="879"/>
            <end position="896"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="4">
        <location>
            <begin position="903"/>
            <end position="923"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="4">
        <location>
            <begin position="929"/>
            <end position="954"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="4">
        <location>
            <begin position="975"/>
            <end position="994"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="4">
        <location>
            <begin position="1006"/>
            <end position="1032"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="5">
        <location>
            <begin position="1041"/>
            <end position="1065"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00004429"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00010942"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="RuleBase" id="RU364070"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="ABX36006.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="1065" mass="114650" checksum="AEF46A87C9E4D492" modified="2008-01-15" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="63" xmlns="http://uniprot.org/uniprot">
    <accession>A9BZX5</accession>
    <name>A9BZX5_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Peptidase T2 asparaginase 2</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ordered locus">Daci_3603</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="5" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX36237.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012205437.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_3603"/>
    <dbReference type="PRIDE" id="A9BZX5"/>
    <dbReference type="EnsemblBacteria" id="ABX36237">
        <property type="protein sequence ID" value="ABX36237"/>
        <property type="gene ID" value="Daci_3603"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_3603"/>
    <dbReference type="eggNOG" id="COG1446">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_021603_1_0_4"/>
    <dbReference type="OMA" id="YSRMRWK"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016787">
        <property type="term" value="F:hydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029055">
        <property type="entry name" value="Ntn_hydrolases_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000246">
        <property type="entry name" value="Peptidase_T2"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10188">
        <property type="entry name" value="PTHR10188"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01112">
        <property type="entry name" value="Asparaginase_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56235">
        <property type="entry name" value="SSF56235"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Substrate binding" evidence="2">
        <location>
            <begin position="219"/>
            <end position="222"/>
        </location>
    </feature>
    <feature type="region of interest" description="Substrate binding" evidence="2">
        <location>
            <begin position="242"/>
            <end position="245"/>
        </location>
    </feature>
    <feature type="active site" description="Nucleophile" evidence="1">
        <location>
            <position position="191"/>
        </location>
    </feature>
    <feature type="site" description="Cleavage; by autolysis" evidence="3">
        <location>
            <begin position="190"/>
            <end position="191"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="PIRSR" id="PIRSR600246-1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="PIRSR" id="PIRSR600246-2"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="PIRSR" id="PIRSR600246-3"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="ABX36237.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="324" mass="33390" checksum="DB1F38EF8FDA0742" modified="2008-01-15" version="1">MNISQNSRKFSIAVHGGAGTVIQGQADEAPYHAALAQALESGAALLRRGASALDAVQAACQSLEDCPLFNAGRGSVYTRDARHEMDAGLMDGSNLRAGAVASVSQVRNPIALARHVLDDGQCVLLVGEGAQRFADERGLARMDAGYFDSAERLAQLRRVQAQSGQTALLDHDASGLAAHPAPLNENGKMGTVGAVARDVHGNLAAAASTGGLTNKRPGRVGDTPVVGAGFYADSTTCAVAATGTGEHFLRAAIAHDIHARMRYLGQSLELAADAAVRGTLTHIGGQGGVVAVDSQGRVHCPFNSAGMYRGYIVDDAPAVTLIFA</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-01-19" version="84" xmlns="http://uniprot.org/uniprot">
    <accession>A9BZX7</accession>
    <name>A9BZX7_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="9">Polar amino acid ABC transporter, inner membrane subunit</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="9" type="ordered locus">Daci_3605</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="9 10" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="10" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="7">Cell membrane</location>
            <topology evidence="7">Multi-pass membrane protein</topology>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the binding-protein-dependent transport system permease family. HisMQ subfamily.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX36239.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012205439.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_3605"/>
    <dbReference type="EnsemblBacteria" id="ABX36239">
        <property type="protein sequence ID" value="ABX36239"/>
        <property type="gene ID" value="Daci_3605"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_3605"/>
    <dbReference type="eggNOG" id="COG4597">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_019602_8_0_4"/>
    <dbReference type="OMA" id="GKPMRVW"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043190">
        <property type="term" value="C:ATP-binding cassette (ABC) transporter complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0022857">
        <property type="term" value="F:transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006865">
        <property type="term" value="P:amino acid transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd06261">
        <property type="entry name" value="TM_PBP2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.3720.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010065">
        <property type="entry name" value="AA_ABC_transptr_permease_3TM"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043429">
        <property type="entry name" value="ArtM/GltK/GlnP/TcyL/YhdX-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000515">
        <property type="entry name" value="MetI-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035906">
        <property type="entry name" value="MetI-like_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30614">
        <property type="entry name" value="PTHR30614"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00528">
        <property type="entry name" value="BPD_transp_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF161098">
        <property type="entry name" value="SSF161098"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01726">
        <property type="entry name" value="HEQRo_perm_3TM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50928">
        <property type="entry name" value="ABC_TM1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-0029">Amino-acid transport</keyword>
    <keyword evidence="6 7" id="KW-0472">Membrane</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 7" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="5 7" id="KW-1133">Transmembrane helix</keyword>
    <keyword evidence="7" id="KW-0813">Transport</keyword>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="34"/>
            <end position="52"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="106"/>
            <end position="126"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="138"/>
            <end position="158"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="319"/>
            <end position="340"/>
        </location>
    </feature>
    <feature type="domain" description="ABC transmembrane type-1" evidence="8">
        <location>
            <begin position="100"/>
            <end position="337"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00010072"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022970"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="RuleBase" id="RU363032"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="PROSITE" id="PS50928"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="ABX36239.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="349" mass="36593" checksum="6092856AB7B2E749" modified="2008-01-15" version="1">MNAANAVDAAKAVNAIDTGARQPPAPTRPRWGRLALQLAIGWLLILLLGWLAHNASRNMAARGIAGGFGFLEQTAGFSISEGLLPYEPGDSYLRAVAAGVANTVRAAVPALALATMLGLLLGVAAVARHPLLRGAVRLYVDVARNIPLLVQVLLWYFALTSLLPDVDHPLAIGPLGFLSKAGLALPGPVYDSAAGWHWSSPQPGMFSIDGGLALTPEFLALVGALGLYAAAYCAEIVRAGLQAVPRGQWNAASALGMRRGQQLRLVVLPQALRVIIPPYTNLALSTIKNSSLAVAIGYPDVVMVANTAMSQTGQAIECVTIIAVVYLAINLLTSLALNAFNQRSAFITR</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="55" xmlns="http://uniprot.org/uniprot">
    <accession>A9C008</accession>
    <name>A9C008_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="1">ABC branched chain amino acid family transporter, periplasmic ligand binding protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Daci_3638</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="2" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX36270.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012205466.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_3638"/>
    <dbReference type="PRIDE" id="A9C008"/>
    <dbReference type="EnsemblBacteria" id="ABX36270">
        <property type="protein sequence ID" value="ABX36270"/>
        <property type="gene ID" value="Daci_3638"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_3638"/>
    <dbReference type="eggNOG" id="COG0683">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_027128_1_1_4"/>
    <dbReference type="OMA" id="YPYESNR"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0033218">
        <property type="term" value="F:amide binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006865">
        <property type="term" value="P:amino acid transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd06357">
        <property type="entry name" value="PBP1_AmiC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR039570">
        <property type="entry name" value="AmiC_PBP1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000709">
        <property type="entry name" value="Leu_Ile_Val-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR028082">
        <property type="entry name" value="Peripla_BP_I"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00337">
        <property type="entry name" value="LEUILEVALBP"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53822">
        <property type="entry name" value="SSF53822"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ABX36270.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="382" mass="41918" checksum="4E6F6597FB1A2F52" modified="2008-01-15" version="1">MNDPVRVGILYSATGTTSTIGQSQLQGAQLAIDEINETGGLLGRELVAVRYDPASTPARYAALAEQLIVRDGINVIFGCYMSSSRKAVIPIVEKWNKLLFYPTLYEGFEFSGNVIYTGAAPNQNSVQLADYMTSSFGARVYLIGSDYIYPYESNRIMGELVMQHPGSDKLGEHYLPLDATERDYAAIMQDIRARQPDFIFSTVVGDSTASLYRAYADAGFNPQTMPIASLTTSEAEIAQMGADVAAGHFTAAPYFQSIDSPANARCLARLRQRLGDDCRPNLCWEAAYFQMHLFANAFRQAGSDRIGELLPHLLGSEFDAPQGRIRLDPDNHHTWLHPRVGRANAQGGFTIVRQATRAVSPDPYLVTHSLGDWTASLGALEN</sequence>
</entry>
<entry dataset="Swiss-Prot" created="2008-09-02" modified="2022-08-03" version="75" xmlns="http://uniprot.org/uniprot">
    <accession>A9C0B9</accession>
    <name>SYA_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Alanine--tRNA ligase</fullName>
            <ecNumber evidence="1">6.1.1.7</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="1">Alanyl-tRNA synthetase</fullName>
            <shortName evidence="1">AlaRS</shortName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="1" type="primary">alaS</name>
        <name type="ordered locus">Daci_4054</name>
    </gene>
    <organism>
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference key="1">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain>DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="1">Catalyzes the attachment of alanine to tRNA(Ala) in a two-step reaction: alanine is first activated by ATP to form Ala-AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>ATP + L-alanine + tRNA(Ala) = AMP + diphosphate + L-alanyl-tRNA(Ala)</text>
            <dbReference type="Rhea" id="RHEA:12540"/>
            <dbReference type="Rhea" id="RHEA-COMP:9657"/>
            <dbReference type="Rhea" id="RHEA-COMP:9923"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:33019"/>
            <dbReference type="ChEBI" id="CHEBI:57972"/>
            <dbReference type="ChEBI" id="CHEBI:78442"/>
            <dbReference type="ChEBI" id="CHEBI:78497"/>
            <dbReference type="ChEBI" id="CHEBI:456215"/>
            <dbReference type="EC" id="6.1.1.7"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </cofactor>
        <text evidence="1">Binds 1 zinc ion per subunit.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="domain">
        <text evidence="1">Consists of three domains; the N-terminal catalytic domain, the editing domain and the C-terminal C-Ala domain. The editing domain removes incorrectly charged amino acids, while the C-Ala domain, along with tRNA(Ala), serves as a bridge to cooperatively bring together the editing and aminoacylation centers thus stimulating deacylation of misacylated tRNAs.</text>
    </comment>
    <comment type="similarity">
        <text evidence="1">Belongs to the class-II aminoacyl-tRNA synthetase family.</text>
    </comment>
    <dbReference type="EC" id="6.1.1.7" evidence="1"/>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX36685.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012205879.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A9C0B9"/>
    <dbReference type="SMR" id="A9C0B9"/>
    <dbReference type="STRING" id="398578.Daci_4054"/>
    <dbReference type="PRIDE" id="A9C0B9"/>
    <dbReference type="EnsemblBacteria" id="ABX36685">
        <property type="protein sequence ID" value="ABX36685"/>
        <property type="gene ID" value="Daci_4054"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_4054"/>
    <dbReference type="eggNOG" id="COG0013">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_004485_1_1_4"/>
    <dbReference type="OMA" id="YHHTMFE"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004813">
        <property type="term" value="F:alanine-tRNA ligase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000049">
        <property type="term" value="F:tRNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008270">
        <property type="term" value="F:zinc ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006419">
        <property type="term" value="P:alanyl-tRNA aminoacylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.930.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00036_B">
        <property type="entry name" value="Ala_tRNA_synth_B"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045864">
        <property type="entry name" value="aa-tRNA-synth_II/BPL/LPL"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002318">
        <property type="entry name" value="Ala-tRNA-lgiase_IIc"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018162">
        <property type="entry name" value="Ala-tRNA-ligase_IIc_anticod-bd"/>
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        <property type="entry name" value="Ala-tRNA-synth_IIc_core"/>
    </dbReference>
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        <property type="entry name" value="Ala-tRNA-synth_IIc_N"/>
    </dbReference>
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        <property type="entry name" value="Ala_tRNA_ligase_euk/bac"/>
    </dbReference>
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        <property type="entry name" value="DHHA1_dom"/>
    </dbReference>
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        <property type="entry name" value="Thr/Ala-tRNA-synth_IIc_edit"/>
    </dbReference>
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        <property type="entry name" value="Transl_B-barrel_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012947">
        <property type="entry name" value="tRNA_SAD"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02272">
        <property type="entry name" value="DHHA1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01411">
        <property type="entry name" value="tRNA-synt_2c"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07973">
        <property type="entry name" value="tRNA_SAD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00980">
        <property type="entry name" value="TRNASYNTHALA"/>
    </dbReference>
    <dbReference type="SMART" id="SM00863">
        <property type="entry name" value="tRNA_SAD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF101353">
        <property type="entry name" value="SSF101353"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50447">
        <property type="entry name" value="SSF50447"/>
        <property type="match status" value="1"/>
    </dbReference>
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        <property type="entry name" value="SSF55186"/>
        <property type="match status" value="1"/>
    </dbReference>
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        <property type="entry name" value="SSF55681"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00344">
        <property type="entry name" value="alaS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50860">
        <property type="entry name" value="AA_TRNA_LIGASE_II_ALA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword id="KW-0030">Aminoacyl-tRNA synthetase</keyword>
    <keyword id="KW-0067">ATP-binding</keyword>
    <keyword id="KW-0963">Cytoplasm</keyword>
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    <keyword id="KW-0479">Metal-binding</keyword>
    <keyword id="KW-0547">Nucleotide-binding</keyword>
    <keyword id="KW-0648">Protein biosynthesis</keyword>
    <keyword id="KW-1185">Reference proteome</keyword>
    <keyword id="KW-0694">RNA-binding</keyword>
    <keyword id="KW-0820">tRNA-binding</keyword>
    <keyword id="KW-0862">Zinc</keyword>
    <feature type="chain" id="PRO_0000347582" description="Alanine--tRNA ligase">
        <location>
            <begin position="1"/>
            <end position="874"/>
        </location>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <position position="564"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <position position="568"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <position position="665"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <position position="669"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000255" key="1">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00036"/>
        </source>
    </evidence>
    <sequence length="874" mass="94523" checksum="8D50ED4D3CC0669C" modified="2008-01-15" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="37" xmlns="http://uniprot.org/uniprot">
    <accession>A9C0D9</accession>
    <name>A9C0D9_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Daci_4074</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="2" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX36705.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="PRIDE" id="A9C0D9"/>
    <dbReference type="EnsemblBacteria" id="ABX36705">
        <property type="protein sequence ID" value="ABX36705"/>
        <property type="gene ID" value="Daci_4074"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_4074"/>
    <dbReference type="eggNOG" id="ENOG502ZEUC">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_1955994_0_0_4"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ABX36705.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="128" mass="14282" checksum="8AD3132ECBD8A5BF" modified="2008-01-15" version="1">MSAASRHSTARILLRLRRWTGPWSAAPRAEHGTMPAMPIDPTHPKHTVHKRVVQAFQGHWAGHDNKYPQRFRLPPEELYHLDHVMHKGEHPGIMWGVPLDADPSTKGEMVAIDGTVVSIAPPESEPTA</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="64" xmlns="http://uniprot.org/uniprot">
    <accession>A9C0J5</accession>
    <name>A9C0J5_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="7">Major facilitator superfamily MFS_1</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ordered locus">Daci_4438</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="8" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX37068.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012206240.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_4438"/>
    <dbReference type="PRIDE" id="A9C0J5"/>
    <dbReference type="EnsemblBacteria" id="ABX37068">
        <property type="protein sequence ID" value="ABX37068"/>
        <property type="gene ID" value="Daci_4438"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_4438"/>
    <dbReference type="eggNOG" id="COG0477">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_001265_39_5_4"/>
    <dbReference type="OMA" id="MGNATEW"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0022857">
        <property type="term" value="F:transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.1250.20">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011701">
        <property type="entry name" value="MFS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020846">
        <property type="entry name" value="MFS_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036259">
        <property type="entry name" value="MFS_trans_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005829">
        <property type="entry name" value="Sugar_transporter_CS"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07690">
        <property type="entry name" value="MFS_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF103473">
        <property type="entry name" value="SSF103473"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50850">
        <property type="entry name" value="MFS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00216">
        <property type="entry name" value="SUGAR_TRANSPORT_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4 5" id="KW-0472">Membrane</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 5" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="3 5" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="30"/>
            <end position="49"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="55"/>
            <end position="79"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="91"/>
            <end position="109"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="115"/>
            <end position="135"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="156"/>
            <end position="179"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="191"/>
            <end position="210"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="248"/>
            <end position="270"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="282"/>
            <end position="302"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="314"/>
            <end position="333"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="339"/>
            <end position="363"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="375"/>
            <end position="399"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="5">
        <location>
            <begin position="405"/>
            <end position="425"/>
        </location>
    </feature>
    <feature type="domain" description="MFS" evidence="6">
        <location>
            <begin position="18"/>
            <end position="432"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="PROSITE" id="PS50850"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="ABX37068.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="464" mass="50188" checksum="7428A83F24BA1C04" modified="2008-01-15" version="1">MSATPIHTQPTGHQPRKAATSGWIGSALEYYDFFIYATAAALIFPQIFFPQGDPAIAIIASLATYGVGYVARPIGAFVLGHLGDTHGRKQVLVWCMFLMGFSTIAVGLLPTYDQVGLWAPALLVLMRLIQGFAVAGEISGASSMILEHAPFGRRGFFASFTLQGVQAGQILAAAVFLPLAHYMPTEQFNSWGWRIPFILSFVVIIAGWIIRREVNETPAFTAAGRSEARPRSPVVEAFRHHSPDMLRVVCMALMNVIPVVATIFGAAYAVQPAYGIGFAKDMYLWIPVVGNIVAVLVIPMVGNLSDRIGRRPPIIFGALLSGLLAIGYLYAISTRNMPLAFAMSILMWGVVYQGYNAVFPSFYPELFPTRTRVSAMAISQNVGTAITAMLPALFTAVAPPGAHNIWLTVGLIAFGITVVAALAAWSARETYRVRMEDLGEAGAQPVDAAEYERLRTQALAQSAR</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="59" xmlns="http://uniprot.org/uniprot">
    <accession>A9C0K1</accession>
    <name>A9C0K1_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Oxidoreductase domain protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Daci_4444</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="4" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX37074.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012206246.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_4444"/>
    <dbReference type="PRIDE" id="A9C0K1"/>
    <dbReference type="EnsemblBacteria" id="ABX37074">
        <property type="protein sequence ID" value="ABX37074"/>
        <property type="gene ID" value="Daci_4444"/>
    </dbReference>
    <dbReference type="GeneID" id="60689010"/>
    <dbReference type="KEGG" id="dac:Daci_4444"/>
    <dbReference type="eggNOG" id="COG0673">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_023194_1_3_4"/>
    <dbReference type="OMA" id="LNIQQMD"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000166">
        <property type="term" value="F:nucleotide binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000683">
        <property type="entry name" value="Gfo/Idh/MocA-like_OxRdtase_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045560">
        <property type="entry name" value="LigC_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036291">
        <property type="entry name" value="NAD(P)-bd_dom_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01408">
        <property type="entry name" value="GFO_IDH_MocA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF19858">
        <property type="entry name" value="OxRdtase_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51735">
        <property type="entry name" value="SSF51735"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="GFO_IDH_MocA" evidence="1">
        <location>
            <begin position="6"/>
            <end position="125"/>
        </location>
    </feature>
    <feature type="domain" description="OxRdtase_C" evidence="2">
        <location>
            <begin position="155"/>
            <end position="317"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF01408"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF19858"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ABX37074.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="319" mass="34913" checksum="B79A596D6B4AD5B0" modified="2008-01-15" version="1">MSNKTIKVALAGAGAFGIKHLDGIKNIDGVEVVSLVGRELAKTQEVADKYGIKHVTTELADSLALPEVDAVILCTPTQMHAAQAIECLKAGKHVQVEIPLADSLKDAQAVADLQKQTGLVAMCGHTRRFNPSHQWVHKKIAAGEFNIQQMDVQTYFFRRTNMNALGQARSWTDHLLWHHAAHTVDLFAYQAGSPIVKANAVQGPIHPELGIAMDMSIQLKAANGAICTLSLSFNNDGPLGTFFRYIGDTGTYIARYDDLVNGKEEKIDVSKVDVSMNGIELQDREFFAAIREGREPNSSVAQVLPCYQVLHDLEQQLQA</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="61" xmlns="http://uniprot.org/uniprot">
    <accession>A9C0S4</accession>
    <name>A9C0S4_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Daci_5759</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="2" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX38387.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012207556.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_5759"/>
    <dbReference type="PRIDE" id="A9C0S4"/>
    <dbReference type="EnsemblBacteria" id="ABX38387">
        <property type="protein sequence ID" value="ABX38387"/>
        <property type="gene ID" value="Daci_5759"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_5759"/>
    <dbReference type="eggNOG" id="COG0061">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_054187_0_0_4"/>
    <dbReference type="OMA" id="SHQSARY"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003951">
        <property type="term" value="F:NAD+ kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0019674">
        <property type="term" value="P:NAD metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.200.30">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017437">
        <property type="entry name" value="ATP-NAD_kinase_PpnK-typ_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016064">
        <property type="entry name" value="NAD/diacylglycerol_kinase_sf"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF111331">
        <property type="entry name" value="SSF111331"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ABX38387.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="310" mass="33545" checksum="8D8508DB44E0BF8E" modified="2008-01-15" version="1">MNANERKTVLVVRRTRLDELVARYHTLSQARFYIEHLGADFGDYLRESAAYATALQAVVQALEARGRYQIVDRALVPNFVFGADDIVVALGQDGMVANTMKYLDGQPLIGVNPEPARWDGLLLPFAPADLAALLGDVAANRRPTRAVTLAEARLSDGQVLRAANDLFIGPRSHTSALYDIALGDRHESQSSSGLIVATGLGSSAWIKSIVTGSMGIARAVRGASTDFDYQPFAWDAPRLDFAVREPFPSRSSTAELVYGQVTAGQPLTLRSRMPDHGVIFSDGMEADYLQFTAGMQATIGLSDRQGCLVV</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-05-25" version="71" xmlns="http://uniprot.org/uniprot">
    <accession>A9C0T9</accession>
    <name>A9C0T9_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="7">Cystathionine beta-lyase</fullName>
            <ecNumber evidence="7">4.4.1.8</ecNumber>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ordered locus">Daci_5774</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="8" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>H2O + L,L-cystathionine = L-homocysteine + NH4(+) + pyruvate</text>
            <dbReference type="Rhea" id="RHEA:13965"/>
            <dbReference type="ChEBI" id="CHEBI:15361"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:28938"/>
            <dbReference type="ChEBI" id="CHEBI:58161"/>
            <dbReference type="ChEBI" id="CHEBI:58199"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="2 5">
            <name>pyridoxal 5'-phosphate</name>
            <dbReference type="ChEBI" id="CHEBI:597326"/>
        </cofactor>
    </comment>
    <comment type="similarity">
        <text evidence="3 5">Belongs to the trans-sulfuration enzymes family.</text>
    </comment>
    <dbReference type="EC" id="4.4.1.8" evidence="7"/>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX38402.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012207571.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_5774"/>
    <dbReference type="EnsemblBacteria" id="ABX38402">
        <property type="protein sequence ID" value="ABX38402"/>
        <property type="gene ID" value="Daci_5774"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_5774"/>
    <dbReference type="eggNOG" id="COG0626">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_018986_5_1_4"/>
    <dbReference type="OMA" id="ETTIKFI"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004121">
        <property type="term" value="F:cystathionine beta-lyase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030170">
        <property type="term" value="F:pyridoxal phosphate binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0019346">
        <property type="term" value="P:transsulfuration"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd00614">
        <property type="entry name" value="CGS_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.640.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.1150.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000277">
        <property type="entry name" value="Cys/Met-Metab_PyrdxlP-dep_enz"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006233">
        <property type="entry name" value="Cys_b_lyase_bac"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015424">
        <property type="entry name" value="PyrdxlP-dep_Trfase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015421">
        <property type="entry name" value="PyrdxlP-dep_Trfase_major"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015422">
        <property type="entry name" value="PyrdxlP-dep_Trfase_small"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43500">
        <property type="entry name" value="PTHR43500"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01053">
        <property type="entry name" value="Cys_Met_Meta_PP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF001434">
        <property type="entry name" value="CGS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53383">
        <property type="entry name" value="SSF53383"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01324">
        <property type="entry name" value="cysta_beta_ly_B"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="7" id="KW-0456">Lyase</keyword>
    <keyword evidence="4 5" id="KW-0663">Pyridoxal phosphate</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="6">
        <location>
            <begin position="1"/>
            <end position="33"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="6">
        <location>
            <begin position="19"/>
            <end position="33"/>
        </location>
    </feature>
    <feature type="modified residue" description="N6-(pyridoxal phosphate)lysine" evidence="4">
        <location>
            <position position="217"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001535"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00001933"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00009077"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="PIRSR" id="PIRSR001434-2"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="RuleBase" id="RU362118"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="ABX38402.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="407" mass="43750" checksum="3A13BBE0893609EA" modified="2008-01-15" version="1">MSTPQDKHRPLGPSTRLLHAGTPQLQGGSGPVNVPVVRTSTVRFADSAAYADLHHRREAGERLASYGRHGLDTHRALEDAVVALEGGHRAFLTPSGLSAITLVLIALLSPGDHALVADSVYSPVRRVDATLLQRLGITLEYFSPSRDDLAGKIRPNTRLVYLESPSSLLYEVLDLPALAAVARRHGIAVATDNTWSGGWFYQPLEHGANLSIQAATKYIAGHSDVMQGIVITDGPALSKKISTAYEALGLTIGADDAYLALRGLRTLPVRLAQHQRHATEIAQWLEQQPQVGRVFYPALPSDPGHALWKRDFSGASGLVSFAFAEGVDAGAGAVFVDSLQQFAQGASWGGYESLALVAQPERLREHSVWTGTAPVVRLHVGLEDPLDLIADLERGFGVVVERFRLAA</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="91" xmlns="http://uniprot.org/uniprot">
    <accession>A9C100</accession>
    <name>A9C100_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Transcriptional regulator, AraC family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ordered locus">Daci_5835</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="6" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX38463.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012207632.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_5835"/>
    <dbReference type="PRIDE" id="A9C100"/>
    <dbReference type="EnsemblBacteria" id="ABX38463">
        <property type="protein sequence ID" value="ABX38463"/>
        <property type="gene ID" value="Daci_5835"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_5835"/>
    <dbReference type="eggNOG" id="COG2207">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_000445_87_0_4"/>
    <dbReference type="OMA" id="HARGQLF"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003700">
        <property type="term" value="F:DNA-binding transcription factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043565">
        <property type="term" value="F:sequence-specific DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009057">
        <property type="entry name" value="Homeobox-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018060">
        <property type="entry name" value="HTH_AraC"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018062">
        <property type="entry name" value="HTH_AraC-typ_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011051">
        <property type="entry name" value="RmlC_Cupin_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020449">
        <property type="entry name" value="Tscrpt_reg_HTH_AraC-type"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12833">
        <property type="entry name" value="HTH_18"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00032">
        <property type="entry name" value="HTHARAC"/>
    </dbReference>
    <dbReference type="SMART" id="SM00342">
        <property type="entry name" value="HTH_ARAC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46689">
        <property type="entry name" value="SSF46689"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51182">
        <property type="entry name" value="SSF51182"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00041">
        <property type="entry name" value="HTH_ARAC_FAMILY_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01124">
        <property type="entry name" value="HTH_ARAC_FAMILY_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0804">Transcription</keyword>
    <keyword evidence="1" id="KW-0805">Transcription regulation</keyword>
    <feature type="domain" description="HTH araC/xylS-type" evidence="4">
        <location>
            <begin position="174"/>
            <end position="271"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023015"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023163"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="PROSITE" id="PS01124"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="ABX38463.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="276" mass="29835" checksum="E50E3F11AF77E8C3" modified="2008-01-15" version="1">MPDAILELVSHVNRADGPVLIAAVGNQDEELASEPHRHARGQLFGSLRGLLSVGVEDAVWVVPAIHAVWLPPHQLHSGRSHGPFHGWSVYVAEPACAELSQRPCAIRTSGLLREAVLRAAGWGWQQGVPTTQPVQPGPSADQARAHVMAVILDEIRTLPVEPLGLPLPADPRLQRIARALIADPADARDLDAWARWAAVSSRTLSRRFVSETGFSFTAWRQRARLMRSLEMLAAGAPVTNIALDLGYATASAFIGLFRRTFGETPAAYRGRLGASV</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="98" xmlns="http://uniprot.org/uniprot">
    <accession>A9C170</accession>
    <name>A9C170_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="8">Tyrosine--tRNA ligase</fullName>
            <ecNumber evidence="8">6.1.1.1</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="8">Tyrosyl-tRNA synthetase</fullName>
            <shortName evidence="8">TyrRS</shortName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="8" type="primary">tyrS</name>
        <name evidence="11" type="ordered locus">Daci_5905</name>
    </gene>
    <organism evidence="11 12">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="11 12" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="12">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="12" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="12">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="8">Catalyzes the attachment of tyrosine to tRNA(Tyr) in a two-step reaction: tyrosine is first activated by ATP to form Tyr-AMP and then transferred to the acceptor end of tRNA(Tyr).</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1 8">
            <text>ATP + L-tyrosine + tRNA(Tyr) = AMP + diphosphate + H(+) + L-tyrosyl-tRNA(Tyr)</text>
            <dbReference type="Rhea" id="RHEA:10220"/>
            <dbReference type="Rhea" id="RHEA-COMP:9706"/>
            <dbReference type="Rhea" id="RHEA-COMP:9707"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:33019"/>
            <dbReference type="ChEBI" id="CHEBI:58315"/>
            <dbReference type="ChEBI" id="CHEBI:78442"/>
            <dbReference type="ChEBI" id="CHEBI:78536"/>
            <dbReference type="ChEBI" id="CHEBI:456215"/>
            <dbReference type="EC" id="6.1.1.1"/>
        </reaction>
    </comment>
    <comment type="subunit">
        <text evidence="8">Homodimer.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="8">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="8">Belongs to the class-I aminoacyl-tRNA synthetase family. TyrS type 2 subfamily.</text>
    </comment>
    <dbReference type="EC" id="6.1.1.1" evidence="8"/>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX38533.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012207702.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_5905"/>
    <dbReference type="PRIDE" id="A9C170"/>
    <dbReference type="EnsemblBacteria" id="ABX38533">
        <property type="protein sequence ID" value="ABX38533"/>
        <property type="gene ID" value="Daci_5905"/>
    </dbReference>
    <dbReference type="GeneID" id="60690266"/>
    <dbReference type="KEGG" id="dac:Daci_5905"/>
    <dbReference type="eggNOG" id="COG0162">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_024003_5_0_4"/>
    <dbReference type="OMA" id="YMMAKDS"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003723">
        <property type="term" value="F:RNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004831">
        <property type="term" value="F:tyrosine-tRNA ligase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006437">
        <property type="term" value="P:tyrosyl-tRNA aminoacylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd00165">
        <property type="entry name" value="S4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="CDD" id="cd00805">
        <property type="entry name" value="TyrRS_core"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.10.290.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.620">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_02007">
        <property type="entry name" value="Tyr_tRNA_synth_type2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001412">
        <property type="entry name" value="aa-tRNA-synth_I_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002305">
        <property type="entry name" value="aa-tRNA-synth_Ic"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014729">
        <property type="entry name" value="Rossmann-like_a/b/a_fold"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002942">
        <property type="entry name" value="S4_RNA-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036986">
        <property type="entry name" value="S4_RNA-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002307">
        <property type="entry name" value="Tyr-tRNA-ligase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR024088">
        <property type="entry name" value="Tyr-tRNA-ligase_bac-type"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR024108">
        <property type="entry name" value="Tyr-tRNA-ligase_bac_2"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11766">
        <property type="entry name" value="PTHR11766"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11766:SF1">
        <property type="entry name" value="PTHR11766:SF1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01479">
        <property type="entry name" value="S4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00579">
        <property type="entry name" value="tRNA-synt_1b"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR01040">
        <property type="entry name" value="TRNASYNTHTYR"/>
    </dbReference>
    <dbReference type="SMART" id="SM00363">
        <property type="entry name" value="S4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00234">
        <property type="entry name" value="tyrS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00178">
        <property type="entry name" value="AA_TRNA_LIGASE_I"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="7 8 9" id="KW-0030">Aminoacyl-tRNA synthetase</keyword>
    <keyword evidence="5 8 9" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="2 8" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="3 8 9" id="KW-0436">Ligase</keyword>
    <keyword evidence="4 8 9" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="6 8 9" id="KW-0648">Protein biosynthesis</keyword>
    <keyword evidence="12" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="S4" evidence="10">
        <location>
            <begin position="349"/>
            <end position="410"/>
        </location>
    </feature>
    <feature type="short sequence motif" description="'HIGH' region" evidence="8">
        <location>
            <begin position="57"/>
            <end position="66"/>
        </location>
    </feature>
    <feature type="short sequence motif" description="'KMSKS' region" evidence="8">
        <location>
            <begin position="241"/>
            <end position="245"/>
        </location>
    </feature>
    <feature type="binding site" evidence="8">
        <location>
            <position position="244"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00000069"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022490"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022598"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022917"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023146"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_02007"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="RuleBase" id="RU363036"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="10">
        <source>
            <dbReference type="SMART" id="SM00363"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="EMBL" id="ABX38533.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="410" mass="44851" checksum="C69ADEF443DFD8F8" modified="2008-01-15" version="1">MNQSAVTTYPVTDGVSQALETTLRGVDELLPQADWVQKLARSEATGVPLRIKLGLDPTAPDIHLGHTVVLNKMRQLQDLGHQVIFLIGDFTTLIGDPSGRNSTRPPLTAEQIKVNAETYYTQAAKVLDPARTEVRYNSEWCDKLGARGMIELSAKYTVARMMERNDFHQRFTDGSSISLHEFLYPLLQGYDSVALRADLEMGGTDQKFNLLMGRHLQQEYGQDTQCVLTMPLLVGLDGEHKMSKSKNNYIGITEDANTMFAKVLSISDTLMWNWYTLLSFKSLAEIAALKAEVEGGRNPKDAKVLLAKEITARFHSAALADAAEQDFNNRSKGGIPDQIDEVSLSGAPLGIGALLKQANLAPSTSEANRLIDGGGVRVDGTAISDRGLKLEAGTYVVQVGKRKFARVTLG</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2021-06-02" version="54" xmlns="http://uniprot.org/uniprot">
    <accession>A9C194</accession>
    <name>A9C194_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_5929</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX38557.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_5929"/>
    <dbReference type="EnsemblBacteria" id="ABX38557">
        <property type="protein sequence ID" value="ABX38557"/>
        <property type="gene ID" value="Daci_5929"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_5929"/>
    <dbReference type="eggNOG" id="COG2076">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_131462_5_0_4"/>
    <dbReference type="OMA" id="LAYPFMG"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="43"/>
            <end position="63"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="70"/>
            <end position="90"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX38557.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="115" mass="12786" checksum="6E5A40E6127A8F25" modified="2008-01-15" version="1">MTPILTLLTLLCVVCISIGQLLFKKAATALPENPQIIDWVFNGWLFSSLVLYGFTTLGWIWILRHAPLHMAYPFMGLAFLIVPTLAWVIFNEPLHWRTFAGGALIMAGVAIASTK</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="85" xmlns="http://uniprot.org/uniprot">
    <accession>A9C1J9</accession>
    <name>A9C1J9_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="5">Chaperone SurA</fullName>
        </recommendedName>
        <alternativeName>
            <fullName evidence="5">Peptidyl-prolyl cis-trans isomerase SurA</fullName>
            <shortName evidence="5">PPIase SurA</shortName>
            <ecNumber evidence="5">5.2.1.8</ecNumber>
        </alternativeName>
        <alternativeName>
            <fullName evidence="5">Rotamase SurA</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="5" type="primary">surA</name>
        <name evidence="9" type="ordered locus">Daci_6034</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="9 10" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="10" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="5">Chaperone involved in the correct folding and assembly of outer membrane proteins. Recognizes specific patterns of aromatic residues and the orientation of their side chains, which are found more frequently in integral outer membrane proteins. May act in both early periplasmic and late outer membrane-associated steps of protein maturation.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="5">
            <text>[protein]-peptidylproline (omega=180) = [protein]-peptidylproline (omega=0)</text>
            <dbReference type="Rhea" id="RHEA:16237"/>
            <dbReference type="Rhea" id="RHEA-COMP:10747"/>
            <dbReference type="Rhea" id="RHEA-COMP:10748"/>
            <dbReference type="ChEBI" id="CHEBI:83833"/>
            <dbReference type="ChEBI" id="CHEBI:83834"/>
            <dbReference type="EC" id="5.2.1.8"/>
        </reaction>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="5">Periplasm</location>
        </subcellularLocation>
        <text evidence="5">Is capable of associating with the outer membrane.</text>
    </comment>
    <comment type="domain">
        <text evidence="5">The PPIase activity resides only in the second parvulin domain. The N-terminal region and the C-terminal tail are necessary and sufficient for the chaperone activity of SurA. The PPIase activity is dispensable for SurA to function as a chaperone. The N-terminal region and the C-terminal tail are also required for porin recognition.</text>
    </comment>
    <dbReference type="EC" id="5.2.1.8" evidence="5"/>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX38662.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012207831.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_6034"/>
    <dbReference type="PRIDE" id="A9C1J9"/>
    <dbReference type="EnsemblBacteria" id="ABX38662">
        <property type="protein sequence ID" value="ABX38662"/>
        <property type="gene ID" value="Daci_6034"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_6034"/>
    <dbReference type="eggNOG" id="COG0760">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_034646_11_0_4"/>
    <dbReference type="OMA" id="EGGDMGW"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030288">
        <property type="term" value="C:outer membrane-bounded periplasmic space"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0042277">
        <property type="term" value="F:peptide binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003755">
        <property type="term" value="F:peptidyl-prolyl cis-trans isomerase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051082">
        <property type="term" value="F:unfolded protein binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043165">
        <property type="term" value="P:Gram-negative-bacterium-type cell outer membrane assembly"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006457">
        <property type="term" value="P:protein folding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0050821">
        <property type="term" value="P:protein stabilization"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.10.50.40">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01183">
        <property type="entry name" value="Chaperone_SurA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR046357">
        <property type="entry name" value="PPIase_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000297">
        <property type="entry name" value="PPIase_PpiC"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023058">
        <property type="entry name" value="PPIase_PpiC_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023034">
        <property type="entry name" value="PPIase_SurA"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015391">
        <property type="entry name" value="SurA_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027304">
        <property type="entry name" value="Trigger_fact/SurA_dom_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00639">
        <property type="entry name" value="Rotamase"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="Pfam" id="PF09312">
        <property type="entry name" value="SurA_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF109998">
        <property type="entry name" value="SSF109998"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01096">
        <property type="entry name" value="PPIC_PPIASE_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50198">
        <property type="entry name" value="PPIC_PPIASE_2"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-0143">Chaperone</keyword>
    <keyword evidence="4 5 6" id="KW-0413">Isomerase</keyword>
    <keyword evidence="2 5" id="KW-0574">Periplasm</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1 5" id="KW-0677">Repeat</keyword>
    <keyword evidence="3 5 6" id="KW-0697">Rotamase</keyword>
    <keyword evidence="5" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="5">
        <location>
            <begin position="1"/>
            <end position="26"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5009007256" description="Chaperone SurA" evidence="5">
        <location>
            <begin position="27"/>
            <end position="475"/>
        </location>
    </feature>
    <feature type="domain" description="PpiC" evidence="8">
        <location>
            <begin position="217"/>
            <end position="318"/>
        </location>
    </feature>
    <feature type="domain" description="PpiC" evidence="8">
        <location>
            <begin position="328"/>
            <end position="427"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="7">
        <location>
            <begin position="29"/>
            <end position="62"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022737"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022764"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023110"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023235"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01183"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00278"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="PROSITE" id="PS50198"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="ABX38662.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="475" mass="51876" checksum="6E6E159DAF9A9170" modified="2008-01-15" version="1" precursor="true">MRFLSQTHCCAAAAVALALLATTAQAQGLRVPGQSRAPQAGDASVSRALDATNLPSSRDRGAKAGVRSADYIVAVVNSEPVTNNEVRARMARVAQNIAEQGGQMPPEALLAREVLERLIVEKAQLQEAKDTGLRVDDYAVDQALTNVARQNGLDKAGLQSRLRAEGVNEKQFREELRRQITLQRLRERDVDGRVRVTDADIDRYLAEQRSGGADKAPAAVNLGHILISVPENASPAEVAEREARAKQAAEAARTQGDFLAVVKEFSDVPDGQGGGAMGMRPLDRYPELFTKAVGQTAQGGIVGPFRSGAGFHVLKVLEKSQAGMPSVVTQNHARHILLRIGDQMTEADAAKRLADYKRRVDSGQASFESLAREFSQDGSARNGGDLGWASPGQFVPEFEQVLNALQPGQVSDPLVSRFGVHLIQLIERRQAALTPREQRDMVRNVVRERKLETDYQAWLQELRGRAYVEYREPPQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="62" xmlns="http://uniprot.org/uniprot">
    <accession>A9C1K2</accession>
    <name>A9C1K2_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="5 11">Ribosomal RNA small subunit methyltransferase E</fullName>
            <ecNumber evidence="4 11">2.1.1.193</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="12" type="ordered locus">Daci_6037</name>
    </gene>
    <organism evidence="12 13">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="12 13" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="13">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="13" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="13">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="10 11">Specifically methylates the N3 position of the uracil ring of uridine 1498 (m3U1498) in 16S rRNA. Acts on the fully assembled 30S ribosomal subunit.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1 11">
            <text>S-adenosyl-L-methionine + uridine(1498) in 16S rRNA = H(+) + N(3)-methyluridine(1498) in 16S rRNA + S-adenosyl-L-homocysteine</text>
            <dbReference type="Rhea" id="RHEA:42920"/>
            <dbReference type="Rhea" id="RHEA-COMP:10283"/>
            <dbReference type="Rhea" id="RHEA-COMP:10284"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:57856"/>
            <dbReference type="ChEBI" id="CHEBI:59789"/>
            <dbReference type="ChEBI" id="CHEBI:65315"/>
            <dbReference type="ChEBI" id="CHEBI:74502"/>
            <dbReference type="EC" id="2.1.1.193"/>
        </reaction>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="2 11">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="3 11">Belongs to the RNA methyltransferase RsmE family.</text>
    </comment>
    <dbReference type="EC" id="2.1.1.193" evidence="4 11"/>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX38665.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012207834.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_6037"/>
    <dbReference type="PRIDE" id="A9C1K2"/>
    <dbReference type="EnsemblBacteria" id="ABX38665">
        <property type="protein sequence ID" value="ABX38665"/>
        <property type="gene ID" value="Daci_6037"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_6037"/>
    <dbReference type="eggNOG" id="COG1385">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_067442_5_0_4"/>
    <dbReference type="OMA" id="TQWKGER"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008168">
        <property type="term" value="F:methyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0032259">
        <property type="term" value="P:methylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006364">
        <property type="term" value="P:rRNA processing"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.1280.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029028">
        <property type="entry name" value="Alpha/beta_knot_MTases"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015947">
        <property type="entry name" value="PUA-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006700">
        <property type="entry name" value="rRNA_ssu_MeTrfase-E"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029026">
        <property type="entry name" value="tRNA_m1G_MTases_N"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30027">
        <property type="entry name" value="PTHR30027"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04452">
        <property type="entry name" value="Methyltrans_RNA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF015601">
        <property type="entry name" value="MTase_slr0722"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF75217">
        <property type="entry name" value="SSF75217"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF88697">
        <property type="entry name" value="SSF88697"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00046">
        <property type="entry name" value="TIGR00046"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="6 11" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="8 11" id="KW-0489">Methyltransferase</keyword>
    <keyword evidence="13" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="7 11" id="KW-0698">rRNA processing</keyword>
    <keyword evidence="11" id="KW-0949">S-adenosyl-L-methionine</keyword>
    <keyword evidence="9 11" id="KW-0808">Transferase</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00000792"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00004496"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00005528"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00012328"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00013673"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022490"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022552"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00022603"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00025699"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="PIRNR" id="PIRNR015601"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="EMBL" id="ABX38665.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="13">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="250" mass="26437" checksum="CD74E703BC8B1DD4" modified="2008-01-15" version="1">MPRFHCPIALRSGADIDLPPGAARHVQVLRLQPGDGITLFEGRAGEGFSGGEFEATVLRMGRSDVAVRIGAHHAVEREPLRPVHLLAGITANERMDWLVEKAAELGAASITPLVAERSVLKLKGERAEKKLAHWQAVAVSACEQCTRNRVPPLHTPADLEDWLESGAQQLPPGTLRLLLSLGEGTRPLGEVLDATAEDAPVVFLSGPEGGLSPAEEALARAQGFVPVTLGPRVLRAETAPLAALAALTLA</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="87" xmlns="http://uniprot.org/uniprot">
    <accession>A9C1Z1</accession>
    <name>A9C1Z1_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="7">Transcription termination/antitermination protein NusA</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="7" type="primary">nusA</name>
        <name evidence="9" type="ordered locus">Daci_2989</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="9 10" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="10" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="7">Participates in both transcription termination and antitermination.</text>
    </comment>
    <comment type="subunit">
        <text evidence="7">Monomer. Binds directly to the core enzyme of the DNA-dependent RNA polymerase and to nascent RNA.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="7">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="7">Belongs to the NusA family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX35627.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012204833.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_2989"/>
    <dbReference type="PRIDE" id="A9C1Z1"/>
    <dbReference type="EnsemblBacteria" id="ABX35627">
        <property type="protein sequence ID" value="ABX35627"/>
        <property type="gene ID" value="Daci_2989"/>
    </dbReference>
    <dbReference type="GeneID" id="60687285"/>
    <dbReference type="KEGG" id="dac:Daci_2989"/>
    <dbReference type="eggNOG" id="COG0195">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_029242_0_2_4"/>
    <dbReference type="OMA" id="MDIDMSA"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003700">
        <property type="term" value="F:DNA-binding transcription factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000166">
        <property type="term" value="F:nucleotide binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003723">
        <property type="term" value="F:RNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006353">
        <property type="term" value="P:DNA-templated transcription, termination"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0031564">
        <property type="term" value="P:transcription antitermination"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.50.140">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.1480.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.300.20">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00945_B">
        <property type="entry name" value="NusA_B"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010995">
        <property type="entry name" value="DNA_repair_Rad51/TF_NusA_a-hlx"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004087">
        <property type="entry name" value="KH_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015946">
        <property type="entry name" value="KH_dom-like_a/b"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025249">
        <property type="entry name" value="KH_dom_NusA-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009019">
        <property type="entry name" value="KH_sf_prok-type"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012340">
        <property type="entry name" value="NA-bd_OB-fold"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR030842">
        <property type="entry name" value="NusA_bac"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036555">
        <property type="entry name" value="NusA_N_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR022967">
        <property type="entry name" value="S1_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003029">
        <property type="entry name" value="S1_domain"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013735">
        <property type="entry name" value="TF_NusA_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010214">
        <property type="entry name" value="Tscrpt_termin_fac_NusA_C_rpt"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010213">
        <property type="entry name" value="Tscrpt_termination_fac_NusA"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR22648">
        <property type="entry name" value="PTHR22648"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13184">
        <property type="entry name" value="KH_5"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08529">
        <property type="entry name" value="NusA_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00575">
        <property type="entry name" value="S1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00322">
        <property type="entry name" value="KH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00316">
        <property type="entry name" value="S1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47794">
        <property type="entry name" value="SSF47794"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50249">
        <property type="entry name" value="SSF50249"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54814">
        <property type="entry name" value="SSF54814"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF69705">
        <property type="entry name" value="SSF69705"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01953">
        <property type="entry name" value="NusA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01954">
        <property type="entry name" value="nusA_Cterm_rpt"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50126">
        <property type="entry name" value="S1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2 7" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4 7" id="KW-0694">RNA-binding</keyword>
    <keyword evidence="6 7" id="KW-0804">Transcription</keyword>
    <keyword evidence="3 7" id="KW-0889">Transcription antitermination</keyword>
    <keyword evidence="5 7" id="KW-0805">Transcription regulation</keyword>
    <keyword evidence="1 7" id="KW-0806">Transcription termination</keyword>
    <feature type="domain" description="S1 motif" evidence="8">
        <location>
            <begin position="138"/>
            <end position="202"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022472"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022490"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022814"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022884"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023015"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023163"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00945"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="PROSITE" id="PS50126"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="ABX35627.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="495" mass="55201" checksum="95DCFC3BC3B2938D" modified="2008-01-15" version="1">MNRELLMLVEAISREKNVERDLVFGAVESALAQATKKLYQGEVDIRVAIDRDSGNYDTFRRWLVVPDDAGLQNPDAEEMLMDAQDRVPGISEGEYIEEEIESVPIGRIGAMAAKQVILQKIRDAEREMLLNEFLSRGDRIFTGTVKRMDKGDIIVEAGRVEGRLRRNEMIPKENLRNGDRVRAMIMEVDATLRGAPIILSRSAPEFMVELFRNEVPEIEQGLLEIKSCARDSGSRAKIAVLSHDKRVDPIGTCVGVRGTRVNAVTNELAGERVDIVLWSEDPAQFVIGALAPANVSSIVVDEEKHAMDVVVDEENLAIAIGRGGQNVRLASELTGWKINIMDAAESAQKQADESAVARQLFMEKLDVDEEIANILIEEGFETLEEVAYVPLQEMLEIEAFDEETVNELRTRAKDALLTQEIAHEENVGKVSQDLLTLEGMTPEIVDKLAEADVHTRDDLADLAIDELTELTGQTEEEAKALIMKAREHWFTEGQE</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="52" xmlns="http://uniprot.org/uniprot">
    <accession>A9C1Z8</accession>
    <name>A9C1Z8_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">MaoC_dehydrat_N domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_2996</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX35634.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012204840.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_2996"/>
    <dbReference type="PRIDE" id="A9C1Z8"/>
    <dbReference type="EnsemblBacteria" id="ABX35634">
        <property type="protein sequence ID" value="ABX35634"/>
        <property type="gene ID" value="Daci_2996"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_2996"/>
    <dbReference type="eggNOG" id="COG2030">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_094876_0_0_4"/>
    <dbReference type="OMA" id="VNFISVT"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029069">
        <property type="entry name" value="HotDog_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR039569">
        <property type="entry name" value="MaoC-like_dehydrat_N"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13452">
        <property type="entry name" value="MaoC_dehydrat_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54637">
        <property type="entry name" value="SSF54637"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="MaoC_dehydrat_N" evidence="1">
        <location>
            <begin position="30"/>
            <end position="154"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF13452"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX35634.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="165" mass="17916" checksum="3FA547222F285D11" modified="2008-01-15" version="1">MTVNTPQPRPGAAWNAVPRMGQGFFWQDLQVGQQLRTFRRTVTESDLVAFINATGMLEAIFIEEGYDGGAIAGRPVPGAMTYALIEGFILQSMIQGTGLAMLELHQKILGPVLVGDTIEALVEVTAIKPTSKGNRAVVTSRIEVFNQGHQKVMEYTAVRLLAGRS</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="63" xmlns="http://uniprot.org/uniprot">
    <accession>A9C229</accession>
    <name>A9C229_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="7">Inner-membrane translocator</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ordered locus">Daci_3027</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="8" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX35665.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012204871.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_3027"/>
    <dbReference type="PRIDE" id="A9C229"/>
    <dbReference type="EnsemblBacteria" id="ABX35665">
        <property type="protein sequence ID" value="ABX35665"/>
        <property type="gene ID" value="Daci_3027"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_3027"/>
    <dbReference type="eggNOG" id="COG4177">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_031365_1_2_4"/>
    <dbReference type="OMA" id="MIFMRDG"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015658">
        <property type="term" value="F:branched-chain amino acid transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd06581">
        <property type="entry name" value="TM_PBP1_LivM_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001851">
        <property type="entry name" value="ABC_transp_permease"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043428">
        <property type="entry name" value="LivM-like"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30482">
        <property type="entry name" value="PTHR30482"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02653">
        <property type="entry name" value="BPD_transp_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="5 6" id="KW-0472">Membrane</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 6" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="4 6" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="12"/>
            <end position="34"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="40"/>
            <end position="60"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="80"/>
            <end position="96"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="102"/>
            <end position="121"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="128"/>
            <end position="147"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="153"/>
            <end position="174"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="186"/>
            <end position="203"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="242"/>
            <end position="260"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="294"/>
            <end position="314"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="320"/>
            <end position="353"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="365"/>
            <end position="384"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="ABX35665.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="393" mass="41965" checksum="C4DA1050758EE8A3" modified="2008-01-15" version="1">MQTTTIQAPPRAAPRSAGSAAIVLGVALAGAVLLRQFLLAESWITVLALLACFAVALVAVQKRPLVEDRIVAAFGQCRPLAVGTGVVLALVFPWVLGGDSYAMHLMIIACLYAVLALALNFQLGSANIPNFATGASYGIGAYASALLAIHFGVSFWICLLVAAAVATVFGFLLGLPSMRTRDSYQALVTIAFGIVVHQLLMNLEWTGGANGLVGIPSPTLFGHSFNDPITLWGHSLPGQANFYYVAVALLGLAIVSAQRLHSSRVGLAWNALRDDEIAARACGINVTWFKVKAFAVDAFLAGFAGTVYAFYVSFISPDNFTFLVSVTIMTLVIAGGMDNTLGVIVGAFLLTMLPEKLRAFSDYRILFYGLVVIAFLIIRPRGIFPQRVRNHEH</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="83" xmlns="http://uniprot.org/uniprot">
    <accession>A9C272</accession>
    <name>A9C272_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">Peptide-methionine (R)-S-oxide reductase</fullName>
            <ecNumber evidence="2">1.8.4.12</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="6" type="ordered locus">Daci_3070</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="7" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>[thioredoxin]-disulfide + H2O + L-methionyl-[protein] = [thioredoxin]-dithiol + L-methionyl-(R)-S-oxide-[protein]</text>
            <dbReference type="Rhea" id="RHEA:24164"/>
            <dbReference type="Rhea" id="RHEA-COMP:10698"/>
            <dbReference type="Rhea" id="RHEA-COMP:10700"/>
            <dbReference type="Rhea" id="RHEA-COMP:12313"/>
            <dbReference type="Rhea" id="RHEA-COMP:12314"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:16044"/>
            <dbReference type="ChEBI" id="CHEBI:29950"/>
            <dbReference type="ChEBI" id="CHEBI:45764"/>
            <dbReference type="ChEBI" id="CHEBI:50058"/>
            <dbReference type="EC" id="1.8.4.12"/>
        </reaction>
    </comment>
    <dbReference type="EC" id="1.8.4.12" evidence="2"/>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX35708.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012204914.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_3070"/>
    <dbReference type="PRIDE" id="A9C272"/>
    <dbReference type="EnsemblBacteria" id="ABX35708">
        <property type="protein sequence ID" value="ABX35708"/>
        <property type="gene ID" value="Daci_3070"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_3070"/>
    <dbReference type="eggNOG" id="COG0229">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_031040_8_2_4"/>
    <dbReference type="OMA" id="CDVPLFS"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0033743">
        <property type="term" value="F:peptide-methionine (R)-S-oxide reductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002579">
        <property type="entry name" value="Met_Sox_Rdtase_MsrB_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011057">
        <property type="entry name" value="Mss4-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006311">
        <property type="entry name" value="TAT_signal"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01641">
        <property type="entry name" value="SelR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51316">
        <property type="entry name" value="SSF51316"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00357">
        <property type="entry name" value="TIGR00357"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51790">
        <property type="entry name" value="MSRB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51318">
        <property type="entry name" value="TAT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3 6" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="4">
        <location>
            <begin position="1"/>
            <end position="30"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5002732774" description="Peptide-methionine (R)-S-oxide reductase" evidence="4">
        <location>
            <begin position="31"/>
            <end position="166"/>
        </location>
    </feature>
    <feature type="domain" description="MsrB" evidence="5">
        <location>
            <begin position="43"/>
            <end position="164"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001795"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00012499"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023002"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="PROSITE" id="PS51790"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="ABX35708.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="166" mass="18194" checksum="79195EA0D4A1D786" modified="2008-01-15" version="1">MTTRRHLLWTAGAGTTAVLAASLFPRSAPAAASSEIFEVSYSDAEWRARLTPEQYQILRKEGTERAGTSPLNKEHRAGTFACAGCALPLFSSKTKFDSGTGWPSFWQPLDKAVATRQDRTYGMLRTEVHCRRCGGHLGHVFDDGPKPTGLRYCMNGLSLTFTPQPA</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="40" xmlns="http://uniprot.org/uniprot">
    <accession>A9C2B6</accession>
    <name>A9C2B6_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Daci_3422</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="2" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX36060.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012205260.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_3422"/>
    <dbReference type="PRIDE" id="A9C2B6"/>
    <dbReference type="EnsemblBacteria" id="ABX36060">
        <property type="protein sequence ID" value="ABX36060"/>
        <property type="gene ID" value="Daci_3422"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_3422"/>
    <dbReference type="eggNOG" id="COG0640">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_2154239_0_0_4"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006355">
        <property type="term" value="P:regulation of transcription, DNA-templated"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="CDD" id="cd00090">
        <property type="entry name" value="HTH_ARSR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011991">
        <property type="entry name" value="ArsR-like_HTH"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036390">
        <property type="entry name" value="WH_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46785">
        <property type="entry name" value="SSF46785"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ABX36060.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="111" mass="12038" checksum="0E410F21B08B7628" modified="2008-01-15" version="1">MKRSGKVGAFAYAQLIKALHEGPYSRAELAEITGLHTQTVGHYVDELRRAGQVFIAAWDQPADGGRNLVACYQLGQMKDVARPKMSGAHRTAACRARKLQGLVAWPGGVYA</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="62" xmlns="http://uniprot.org/uniprot">
    <accession>A9C2G4</accession>
    <name>A9C2G4_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Arc domain protein DNA binding domain protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Daci_3472</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="4" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX36108.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_3472"/>
    <dbReference type="PRIDE" id="A9C2G4"/>
    <dbReference type="EnsemblBacteria" id="ABX36108">
        <property type="protein sequence ID" value="ABX36108"/>
        <property type="gene ID" value="Daci_3472"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_3472"/>
    <dbReference type="eggNOG" id="ENOG5033BNF">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_1903266_0_0_4"/>
    <dbReference type="OMA" id="KAGHRSM"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006355">
        <property type="term" value="P:regulation of transcription, DNA-templated"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.1220.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005569">
        <property type="entry name" value="Arc_DNA-bd_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013321">
        <property type="entry name" value="Arc_rbn_hlx_hlx"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010985">
        <property type="entry name" value="Ribbon_hlx_hlx"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03869">
        <property type="entry name" value="Arc"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47598">
        <property type="entry name" value="SSF47598"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Arc" evidence="2">
        <location>
            <begin position="33"/>
            <end position="74"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="134"/>
            <end position="157"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF03869"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ABX36108.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="157" mass="17590" checksum="08E3FA7AD738DEC7" modified="2008-01-15" version="1">MLCQLGIMSTRHESEFASGRYHRPMQRKPFPSETQERFIVRFPDGMRDRISEVAKAGHRSMNAEIVARIRRSFELDEAGDMAQTGPDLDVAELKKEIARLCRLLQEHKDAAAGLFEAHKEAVVAEALKRLRSEAGEAASLPKATGDSVQARRTSKKT</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="76" xmlns="http://uniprot.org/uniprot">
    <accession>A9C2I8</accession>
    <name>A9C2I8_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Transcriptional regulator, LysR family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Daci_3705</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="4" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the LysR transcriptional regulatory family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX36337.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012205533.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_3705"/>
    <dbReference type="PRIDE" id="A9C2I8"/>
    <dbReference type="EnsemblBacteria" id="ABX36337">
        <property type="protein sequence ID" value="ABX36337"/>
        <property type="gene ID" value="Daci_3705"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_3705"/>
    <dbReference type="eggNOG" id="COG0583">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_039613_2_2_4"/>
    <dbReference type="OMA" id="HMACEQV"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003700">
        <property type="term" value="F:DNA-binding transcription factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005119">
        <property type="entry name" value="LysR_subst-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000847">
        <property type="entry name" value="Tscrpt_reg_HTH_LysR"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036390">
        <property type="entry name" value="WH_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00126">
        <property type="entry name" value="HTH_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03466">
        <property type="entry name" value="LysR_substrate"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00039">
        <property type="entry name" value="HTHLYSR"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46785">
        <property type="entry name" value="SSF46785"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50931">
        <property type="entry name" value="HTH_LYSR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HTH lysR-type" evidence="2">
        <location>
            <begin position="1"/>
            <end position="58"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00009437"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS50931"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ABX36337.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="300" mass="33429" checksum="6207B135DA67D8E5" modified="2008-01-15" version="1">MDWDHLRFFGELARSGSMAAAARQLGVEHTTVSRRIQALEKQLGAVLFEREAGQWRPTEAGRQLLGVADAMQRAASGLERMPLAAESTSQGPSGLVRVGATEGFGTQLLAPQLAALTQRHPLLSIDLLALPRLLHLSRREADIVISLERPTRGSAVVTKLTDYRLFLYGQREYLARRPLVARTEDLRHHSFIHYVDDLLFTRELQLLSTLFQPERFAFRSTSITAQYEAVRAGAGLAVLPAFIADRDPVLSRVLPAEACFTRTFWMSMPSDARQVQRIEAVWGFLREAVQGMGGLLKPRA</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="62" xmlns="http://uniprot.org/uniprot">
    <accession>A9C2P6</accession>
    <name>A9C2P6_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="5">TRAP dicarboxylate transporter, DctM subunit</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ordered locus">Daci_3763</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="6" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="2">Cell inner membrane</location>
            <topology evidence="2">Multi-pass membrane protein</topology>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX36395.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012205589.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_3763"/>
    <dbReference type="PRIDE" id="A9C2P6"/>
    <dbReference type="EnsemblBacteria" id="ABX36395">
        <property type="protein sequence ID" value="ABX36395"/>
        <property type="gene ID" value="Daci_3763"/>
    </dbReference>
    <dbReference type="GeneID" id="60687989"/>
    <dbReference type="KEGG" id="dac:Daci_3763"/>
    <dbReference type="eggNOG" id="COG1593">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_019824_4_1_4"/>
    <dbReference type="OMA" id="LMWHLDF"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010656">
        <property type="entry name" value="DctM"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004681">
        <property type="entry name" value="TRAP_DctM"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33362">
        <property type="entry name" value="PTHR33362"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF06808">
        <property type="entry name" value="DctM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF006066">
        <property type="entry name" value="HI0050"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00786">
        <property type="entry name" value="dctM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-0472">Membrane</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="3" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="3">
        <location>
            <begin position="6"/>
            <end position="34"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="3">
        <location>
            <begin position="55"/>
            <end position="74"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="3">
        <location>
            <begin position="94"/>
            <end position="124"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="3">
        <location>
            <begin position="136"/>
            <end position="159"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="3">
        <location>
            <begin position="171"/>
            <end position="193"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="3">
        <location>
            <begin position="214"/>
            <end position="235"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="3">
        <location>
            <begin position="241"/>
            <end position="258"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="3">
        <location>
            <begin position="265"/>
            <end position="294"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="3">
        <location>
            <begin position="314"/>
            <end position="344"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="3">
        <location>
            <begin position="356"/>
            <end position="381"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="3">
        <location>
            <begin position="401"/>
            <end position="422"/>
        </location>
    </feature>
    <feature type="domain" description="DctM" evidence="4">
        <location>
            <begin position="8"/>
            <end position="417"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00004429"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="Pfam" id="PF06808"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="ABX36395.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="426" mass="45545" checksum="ADAF3F5A46B1CDEF" modified="2008-01-15" version="1">MVVTLIFLAVLIGGMVIGMPIAQALVLTGVALMWHLDFFDSQLLAQNLQAGFDNFPLLAVPFFILAGELMNAGGLSRRIIDLARAYVGHIRGGLGYVAIGAAVLLASMSGSAIADTAALATILLPMMRDQKYPDSYSAGLLASGGIIAPIIPPSMPFVIYGVTTNTSISKLFLSGVVPGLIMGVFLIFAWWSIARKYDLSRGERMAWGPRLKALAKSFWAMMMPVIILGGLKGGVFTPTEAAVVAAVYALFVSMVIYREMTWSRLYAVFLAAAKTTAVVMFLCGAATVTAYMITLADLPNMLADSFSGLLGSPVLFMATMMLFLLVVGTAMDLTPTILIFGPVCAPLAVKAGIDPIYFGFMFIYVGCIGLITPPVGTVQNVVAGVGRLRMETVIKGTNPFLMVYVLLAVLFVIFPQIILAPLRWMH</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="73" xmlns="http://uniprot.org/uniprot">
    <accession>A9C2T7</accession>
    <name>A9C2T7_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">DNA helicase</fullName>
            <ecNumber evidence="3">3.6.4.12</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="12" type="ordered locus">Daci_4110</name>
    </gene>
    <organism evidence="12 13">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="12 13" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="13">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="13" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="13">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>ATP + H2O = ADP + H(+) + phosphate</text>
            <dbReference type="Rhea" id="RHEA:13065"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:43474"/>
            <dbReference type="ChEBI" id="CHEBI:456216"/>
            <dbReference type="EC" id="3.6.4.12"/>
        </reaction>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the helicase family. DnaB subfamily.</text>
    </comment>
    <dbReference type="EC" id="3.6.4.12" evidence="3"/>
    <dbReference type="EMBL" id="CP000884">
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    <dbReference type="EnsemblBacteria" id="ABX36741">
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        <property type="gene ID" value="Daci_4110"/>
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        <property type="entry name" value="DNA_helicase_DnaB-like_C"/>
    </dbReference>
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        <property type="entry name" value="DNA_helicase_DnaB-like_N"/>
    </dbReference>
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        <property type="entry name" value="DNA_helicase_N/primase_C"/>
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        <property type="entry name" value="P-loop_NTPase"/>
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    </dbReference>
    <dbReference type="Pfam" id="PF03796">
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        <property type="entry name" value="SF4_HELICASE"/>
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    <keyword evidence="6" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="4" id="KW-0639">Primosome</keyword>
    <keyword evidence="13" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="SF4 helicase" evidence="11">
        <location>
            <begin position="170"/>
            <end position="436"/>
        </location>
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    </evidence>
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        </source>
    </evidence>
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        <source>
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        <source>
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    </evidence>
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        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
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    </evidence>
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        </source>
    </evidence>
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        <source>
            <dbReference type="EMBL" id="ABX36741.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="13">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="454" mass="50242" checksum="5F6071859269F33C" modified="2008-01-15" version="1">MREQLATPVSYETERALLGGLLLDPQAWTALPELDDAAFYAPTHRDVFRAIKTLATTGAPTDPISVFEQLRRQGLEIELADVTDLAQYTPSPSSMRRYAEEILGQYRLRQLMDAGRDIVDLAMTPGNTAAEQIDKAQMMLAKLATVKAKRDPQYIHESLEKYIALLQDLSEGKNPAIATGIGGLDKLLNGGMRRGEVMVIGARPKHGKTALALAMARNMARDNSVLYLSQEMPVNQLMHRHTAAAGSFDISRILAASEADTAMWDAVGDAARRLGNLRLSHDDQCSLSLMDIRRKALKVRRERGLDVLFVDFLQLMEGAGEENRNRELDVIVNGIKSFALDLGICVVVLSQMSRKADEHYGRPTMSHLRDSGAIEAAADQIALLFTDWAHPQSKRTAEFEGYAELEIVAHRNGPQGVVPMEFIGKYQQMGDWLKPLPVRRPVAEPTGRARAANF</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="51" xmlns="http://uniprot.org/uniprot">
    <accession>A9C309</accession>
    <name>A9C309_DELAS</name>
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        <submittedName>
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        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_4182</name>
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    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
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        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
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    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
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            <authorList>
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                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX36813.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
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    </dbReference>
    <dbReference type="STRING" id="398578.Daci_4182"/>
    <dbReference type="PRIDE" id="A9C309"/>
    <dbReference type="EnsemblBacteria" id="ABX36813">
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        <property type="gene ID" value="Daci_4182"/>
    </dbReference>
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        <property type="match status" value="1"/>
    </dbReference>
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        <property type="entry name" value="conj_TIGR03757"/>
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    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="1">
        <location>
            <begin position="1"/>
            <end position="34"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5002735328" evidence="1">
        <location>
            <begin position="35"/>
            <end position="148"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX36813.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="148" mass="15913" checksum="46E76375AC44534A" modified="2008-01-15" version="1">MPASLFRFASGWRTLGLAVALPASLAVFSPATFAADVVVVTDSRHPVKTMGGERLIELDEGPRIEAELSAQLPADPEQATAIVKRRLNNGGADLQRRIASAYQGVADAWSLGVTSIPAVVVDQRYVVYGEPDVARAVARIEQHRRPQP</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="60" xmlns="http://uniprot.org/uniprot">
    <accession>A9C317</accession>
    <name>A9C317_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Relaxase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ordered locus">Daci_4190</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="5" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX36821.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
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        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
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    <dbReference type="EnsemblBacteria" id="ABX36821">
        <property type="protein sequence ID" value="ABX36821"/>
        <property type="gene ID" value="Daci_4190"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_4190"/>
    <dbReference type="eggNOG" id="COG3481">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_023668_1_0_4"/>
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    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR022391">
        <property type="entry name" value="ICE_relaxase_PFGI-1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011093">
        <property type="entry name" value="TraI_2_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011119">
        <property type="entry name" value="Unchr_helicase_relaxase_TraI"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036390">
        <property type="entry name" value="WH_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07514">
        <property type="entry name" value="TraI_2"/>
        <property type="match status" value="1"/>
    </dbReference>
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        <property type="entry name" value="TraI_2_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46785">
        <property type="entry name" value="SSF46785"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR03760">
        <property type="entry name" value="ICE_TraI_Pfluor"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
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        <location>
            <begin position="27"/>
            <end position="340"/>
        </location>
    </feature>
    <feature type="domain" description="TraI_2_C" evidence="3">
        <location>
            <begin position="488"/>
            <end position="609"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="23"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="397"/>
            <end position="428"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="459"/>
            <end position="486"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="400"/>
            <end position="415"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF07514"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF07515"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="ABX36821.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="617" mass="67534" checksum="51D110172209F9AE" modified="2008-01-15" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="60" xmlns="http://uniprot.org/uniprot">
    <accession>A9C364</accession>
    <name>A9C364_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Pyridoxamine 5'-phosphate oxidase-related FMN-binding</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Daci_4546</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="4" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX37175.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_4546"/>
    <dbReference type="PRIDE" id="A9C364"/>
    <dbReference type="EnsemblBacteria" id="ABX37175">
        <property type="protein sequence ID" value="ABX37175"/>
        <property type="gene ID" value="Daci_4546"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_4546"/>
    <dbReference type="eggNOG" id="COG0748">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_093808_2_0_4"/>
    <dbReference type="OMA" id="FRFVCIT"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.30.110.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011576">
        <property type="entry name" value="Pyridox_Oxase_put"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012349">
        <property type="entry name" value="Split_barrel_FMN-bd"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01243">
        <property type="entry name" value="Putative_PNPOx"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Putative_PNPOx" evidence="2">
        <location>
            <begin position="32"/>
            <end position="126"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="23"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF01243"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ABX37175.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="194" mass="20409" checksum="D8918B608B24C8E3" modified="2008-01-15" version="1">MLSQAGHRYDGAMPSTPAMPSTPHLSRLQLSLRDLLARRRSAALATQPTDSPAPGAGDALPAPRLSMVPWAWNAQFGCFVLHVSALAAHTRAMELHPAVSLLVCAAEVDGEGVHALERVAIEGVASTPPPGSVLADGARDSYVLRFPEAAFMTDLGDFRFVCITPSIARHVAGFGAARDVSAHDLIEALSIQPS</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="83" xmlns="http://uniprot.org/uniprot">
    <accession>A9C3H9</accession>
    <name>A9C3H9_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="4">Translation initiation factor IF-1</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="4" type="primary">infA</name>
        <name evidence="7" type="ordered locus">Daci_4661</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="8" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="4">One of the essential components for the initiation of protein synthesis. Stabilizes the binding of IF-2 and IF-3 on the 30S subunit to which N-formylmethionyl-tRNA(fMet) subsequently binds. Helps modulate mRNA selection, yielding the 30S pre-initiation complex (PIC). Upon addition of the 50S ribosomal subunit IF-1, IF-2 and IF-3 are released leaving the mature 70S translation initiation complex.</text>
    </comment>
    <comment type="subunit">
        <text evidence="4">Component of the 30S ribosomal translation pre-initiation complex which assembles on the 30S ribosome in the order IF-2 and IF-3, IF-1 and N-formylmethionyl-tRNA(fMet); mRNA recruitment can occur at any time during PIC assembly.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="4">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="4">Belongs to the IF-1 family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX37290.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012206460.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_4661"/>
    <dbReference type="PRIDE" id="A9C3H9"/>
    <dbReference type="EnsemblBacteria" id="ABX37290">
        <property type="protein sequence ID" value="ABX37290"/>
        <property type="gene ID" value="Daci_4661"/>
    </dbReference>
    <dbReference type="GeneID" id="60688804"/>
    <dbReference type="KEGG" id="dac:Daci_4661"/>
    <dbReference type="eggNOG" id="COG0361">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_151267_4_1_4"/>
    <dbReference type="OMA" id="RCRVKLD"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043022">
        <property type="term" value="F:ribosome binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0019843">
        <property type="term" value="F:rRNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003743">
        <property type="term" value="F:translation initiation factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd04451">
        <property type="entry name" value="S1_IF1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.50.140">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00075">
        <property type="entry name" value="IF_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012340">
        <property type="entry name" value="NA-bd_OB-fold"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006196">
        <property type="entry name" value="RNA-binding_domain_S1_IF1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004368">
        <property type="entry name" value="TIF_IF1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33370">
        <property type="entry name" value="PTHR33370"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01176">
        <property type="entry name" value="eIF-1a"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50249">
        <property type="entry name" value="SSF50249"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00008">
        <property type="entry name" value="infA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50832">
        <property type="entry name" value="S1_IF1_TYPE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="1 4 5" id="KW-0396">Initiation factor</keyword>
    <keyword evidence="4 5" id="KW-0648">Protein biosynthesis</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 4" id="KW-0694">RNA-binding</keyword>
    <keyword evidence="2 4" id="KW-0699">rRNA-binding</keyword>
    <feature type="domain" description="S1-like" evidence="6">
        <location>
            <begin position="1"/>
            <end position="72"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022540"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022730"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022884"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00075"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00181"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="PROSITE" id="PS50832"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="ABX37290.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="82" mass="9202" checksum="F8332C675358DA29" modified="2008-01-15" version="1">MAKEELIEMQGSVTEVLPDSRFRVTLENGHQLIAYTGGKMRKHHIRILAGDKVSLEMSPYDLTKGRITFRHLANRGPGPGSR</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="38" xmlns="http://uniprot.org/uniprot">
    <accession>A9C3I6</accession>
    <name>A9C3I6_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Daci_4668</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="2" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX37297.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012206467.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_4668"/>
    <dbReference type="PRIDE" id="A9C3I6"/>
    <dbReference type="EnsemblBacteria" id="ABX37297">
        <property type="protein sequence ID" value="ABX37297"/>
        <property type="gene ID" value="Daci_4668"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_4668"/>
    <dbReference type="HOGENOM" id="CLU_180622_0_0_4"/>
    <dbReference type="OMA" id="HITCEIE"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ABX37297.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="82" mass="9347" checksum="657D5FDC98C0EEE0" modified="2008-01-15" version="1">MQNHNQIERGVIAKVRGEEMSAAQRLLPVAGREQPQQITCEINTLLAGRVRITFELQMYGHGRHRFWHWVGKGAVQLEQLAG</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="42" xmlns="http://uniprot.org/uniprot">
    <accession>A9C3K9</accession>
    <name>A9C3K9_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Daci_4691</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="2" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX37320.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012206490.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_4691"/>
    <dbReference type="PRIDE" id="A9C3K9"/>
    <dbReference type="EnsemblBacteria" id="ABX37320">
        <property type="protein sequence ID" value="ABX37320"/>
        <property type="gene ID" value="Daci_4691"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_4691"/>
    <dbReference type="eggNOG" id="ENOG5032SUA">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_082961_0_0_4"/>
    <dbReference type="OMA" id="PTYMGGK"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ABX37320.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="282" mass="30383" checksum="F17FE0720FF714AF" modified="2008-01-15" version="1">MRIDIKPEGGARYKRALAGLDGGQIAQATAEAINMGAGRVKNSMRSEMQNVFDRPTGYVLQSVQVVKKATAGDLNALVAPTYMGGKGVDPQQILAAQEDGGRRRDKRSEKALRTAGILPIGYQTAIPATPYPGSDDGRGNLKGSTLVQLIAYFQAFGEQGYRANMTKGRMQALHQRGGKGARFMGPVKGIRYIVAYGRLRGGARATARGEFDKRASNLPPGIWAVTGTGGADVRPVLMFVRGGNYKPRISLDGVRKRSGIDELVPRWVRGRVYDAFKKASQG</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="64" xmlns="http://uniprot.org/uniprot">
    <accession>A9BM08</accession>
    <name>A9BM08_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="2 4">30S ribosomal protein S1</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="6" type="ordered locus">Daci_4724</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="7" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="4">Binds mRNA; thus facilitating recognition of the initiation point. It is needed to translate mRNA with a short Shine-Dalgarno (SD) purine-rich sequence.</text>
    </comment>
    <comment type="similarity">
        <text evidence="1 4">Belongs to the bacterial ribosomal protein bS1 family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX37353.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012206523.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_4724"/>
    <dbReference type="PRIDE" id="A9BM08"/>
    <dbReference type="EnsemblBacteria" id="ABX37353">
        <property type="protein sequence ID" value="ABX37353"/>
        <property type="gene ID" value="Daci_4724"/>
    </dbReference>
    <dbReference type="GeneID" id="60688686"/>
    <dbReference type="KEGG" id="dac:Daci_4724"/>
    <dbReference type="eggNOG" id="COG0539">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="eggNOG" id="COG2183">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_015805_2_1_4"/>
    <dbReference type="OMA" id="SLNEFRY"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005840">
        <property type="term" value="C:ribosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003723">
        <property type="term" value="F:RNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003735">
        <property type="term" value="F:structural constituent of ribosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006412">
        <property type="term" value="P:translation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.50.140">
        <property type="match status" value="6"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012340">
        <property type="entry name" value="NA-bd_OB-fold"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035104">
        <property type="entry name" value="Ribosomal_protein_S1-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000110">
        <property type="entry name" value="Ribosomal_S1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR022967">
        <property type="entry name" value="S1_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003029">
        <property type="entry name" value="S1_domain"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10724:SF7">
        <property type="entry name" value="PTHR10724:SF7"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00575">
        <property type="entry name" value="S1"/>
        <property type="match status" value="6"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF002111">
        <property type="entry name" value="RpsA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00681">
        <property type="entry name" value="RIBOSOMALS1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00316">
        <property type="entry name" value="S1"/>
        <property type="match status" value="6"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50249">
        <property type="entry name" value="SSF50249"/>
        <property type="match status" value="6"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00717">
        <property type="entry name" value="rpsA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50126">
        <property type="entry name" value="S1"/>
        <property type="match status" value="6"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0677">Repeat</keyword>
    <keyword evidence="4" id="KW-0687">Ribonucleoprotein</keyword>
    <keyword evidence="4 6" id="KW-0689">Ribosomal protein</keyword>
    <keyword evidence="4" id="KW-0694">RNA-binding</keyword>
    <feature type="domain" description="S1 motif" evidence="5">
        <location>
            <begin position="21"/>
            <end position="87"/>
        </location>
    </feature>
    <feature type="domain" description="S1 motif" evidence="5">
        <location>
            <begin position="105"/>
            <end position="171"/>
        </location>
    </feature>
    <feature type="domain" description="S1 motif" evidence="5">
        <location>
            <begin position="192"/>
            <end position="260"/>
        </location>
    </feature>
    <feature type="domain" description="S1 motif" evidence="5">
        <location>
            <begin position="277"/>
            <end position="347"/>
        </location>
    </feature>
    <feature type="domain" description="S1 motif" evidence="5">
        <location>
            <begin position="364"/>
            <end position="434"/>
        </location>
    </feature>
    <feature type="domain" description="S1 motif" evidence="5">
        <location>
            <begin position="451"/>
            <end position="520"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00006767"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00016782"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022737"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="PIRNR" id="PIRNR002111"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="PROSITE" id="PS50126"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="ABX37353.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="561" mass="61554" checksum="2C7ED5CE5FE28536" modified="2008-01-15" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="75" xmlns="http://uniprot.org/uniprot">
    <accession>A9BM82</accession>
    <name>A9BM82_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Transcriptional regulator, LysR family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Daci_4798</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="4" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the LysR transcriptional regulatory family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX37427.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012206597.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_4798"/>
    <dbReference type="PRIDE" id="A9BM82"/>
    <dbReference type="EnsemblBacteria" id="ABX37427">
        <property type="protein sequence ID" value="ABX37427"/>
        <property type="gene ID" value="Daci_4798"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_4798"/>
    <dbReference type="eggNOG" id="COG0583">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_039613_6_1_4"/>
    <dbReference type="OMA" id="LPWIATP"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003700">
        <property type="term" value="F:DNA-binding transcription factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005119">
        <property type="entry name" value="LysR_subst-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000847">
        <property type="entry name" value="Tscrpt_reg_HTH_LysR"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036390">
        <property type="entry name" value="WH_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00126">
        <property type="entry name" value="HTH_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03466">
        <property type="entry name" value="LysR_substrate"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00039">
        <property type="entry name" value="HTHLYSR"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46785">
        <property type="entry name" value="SSF46785"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50931">
        <property type="entry name" value="HTH_LYSR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HTH lysR-type" evidence="2">
        <location>
            <begin position="1"/>
            <end position="58"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00009437"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS50931"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ABX37427.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="304" mass="32626" checksum="88A0B36D545A1769" modified="2008-01-15" version="1">MEMYQLRAYVTAATLGSVTRTAEALHLTQPAITAQIKALEEELGVALFDRRPGRISLTRAGEALMEPARQVLDAAGRLQGQARELQGEITGQLLLGTVADPEALRLGSLLHGLVEALPLLDIKTRQGWAEELRAQVAAGGLQGAFYIGAHMPRDLGALVLQTLHYRVAAPPALRERVLQSGWKDLAQLPWIGAPAQHHEQALLLALFARQGLSPNQIVESDAAAAPESLVRAGLGLALLREDRALAAAEHGCVAIWPHARVSAQLGFIHPREAEHDPALVATLSQLRRVWGLTEVQAPPPPPPA</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="63" xmlns="http://uniprot.org/uniprot">
    <accession>A9BMJ1</accession>
    <name>A9BMJ1_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="1">L-carnitine dehydratase/bile acid-inducible protein F</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Daci_4907</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="2" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX37536.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012206706.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_4907"/>
    <dbReference type="PRIDE" id="A9BMJ1"/>
    <dbReference type="EnsemblBacteria" id="ABX37536">
        <property type="protein sequence ID" value="ABX37536"/>
        <property type="gene ID" value="Daci_4907"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_4907"/>
    <dbReference type="eggNOG" id="COG1804">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_021588_0_1_4"/>
    <dbReference type="OMA" id="RFWRTAD"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003824">
        <property type="term" value="F:catalytic activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.10540">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003673">
        <property type="entry name" value="CoA-Trfase_fam_III"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023606">
        <property type="entry name" value="CoA-Trfase_III_dom_1_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02515">
        <property type="entry name" value="CoA_transf_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF89796">
        <property type="entry name" value="SSF89796"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ABX37536.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="469" mass="49325" checksum="7DD09ECEAB05F86C" modified="2008-01-15" version="1">MSSLPSPCAFDHCAAQIWAALEGAQGALHRLEMRGQGALASVFPVSDLAAASLGVAGLAISELVAQCGAAAPQVVVDRRLASLWFGSSLHPLGWEMPALWDAVAGDYRTADGWIRLHTNAPHHRAAALAVLGAPANREAVATAARRWAAHELESAVVAQGGCAAAMRGLAAWAAHPQGQAVQQEPLLAWQMHPQPGQPFSFSAGAWQPSAQRPLQGLRVLDLTRILAGPAATRWLAGHGAEVLRIDPPGWEEPGTVPEVTLGKRCARLDLRAPQDRAVFEQLLAGADVLVHGYRDGALEGLGFGAAWRRRLNPSLIDVSLNAYGWSGPWQQRRGFDSLVQMSAGIADAGMHRLGRDRPTPLPLQALDHATGYLMAAAVVMALVRRMQGQGGSTVRASLARTAHLLAGHGVGDPDACPLAPVNGAEDFSAAIEATSWGAARRLRAPVEVAGAPMHWERAACALGTSVAAW</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="58" xmlns="http://uniprot.org/uniprot">
    <accession>A9BMR0</accession>
    <name>A9BMR0_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="5">5-oxoprolinase (ATP-hydrolyzing)</fullName>
            <ecNumber evidence="5">3.5.2.9</ecNumber>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ordered locus">Daci_4976</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="6" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the oxoprolinase family.</text>
    </comment>
    <dbReference type="EC" id="3.5.2.9" evidence="5"/>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX37605.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012206775.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_4976"/>
    <dbReference type="PRIDE" id="A9BMR0"/>
    <dbReference type="EnsemblBacteria" id="ABX37605">
        <property type="protein sequence ID" value="ABX37605"/>
        <property type="gene ID" value="Daci_4976"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_4976"/>
    <dbReference type="eggNOG" id="COG0145">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="eggNOG" id="COG0146">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_002157_0_0_4"/>
    <dbReference type="OMA" id="TDCNVML"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0017168">
        <property type="term" value="F:5-oxoprolinase (ATP-hydrolyzing) activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008040">
        <property type="entry name" value="Hydant_A_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002821">
        <property type="entry name" value="Hydantoinase_A"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003692">
        <property type="entry name" value="Hydantoinase_B"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045079">
        <property type="entry name" value="Oxoprolinase_fam"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11365">
        <property type="entry name" value="PTHR11365"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF05378">
        <property type="entry name" value="Hydant_A_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01968">
        <property type="entry name" value="Hydantoinase_A"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02538">
        <property type="entry name" value="Hydantoinase_B"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Hydant_A_N" evidence="4">
        <location>
            <begin position="14"/>
            <end position="192"/>
        </location>
    </feature>
    <feature type="domain" description="Hydantoinase_A" evidence="2">
        <location>
            <begin position="212"/>
            <end position="493"/>
        </location>
    </feature>
    <feature type="domain" description="Hydantoinase_B" evidence="3">
        <location>
            <begin position="692"/>
            <end position="1208"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00010403"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF01968"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF02538"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="Pfam" id="PF05378"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="ABX37605.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="1210" mass="130115" checksum="FC0826FD1E91F29B" modified="2008-01-15" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="59" xmlns="http://uniprot.org/uniprot">
    <accession>A9BN80</accession>
    <name>A9BN80_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">MGS-like domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Daci_5146</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="4" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the methylglyoxal synthase family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX37775.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012206945.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_5146"/>
    <dbReference type="PRIDE" id="A9BN80"/>
    <dbReference type="EnsemblBacteria" id="ABX37775">
        <property type="protein sequence ID" value="ABX37775"/>
        <property type="gene ID" value="Daci_5146"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_5146"/>
    <dbReference type="eggNOG" id="COG1803">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_082725_0_0_4"/>
    <dbReference type="OMA" id="CHRAIFF"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008929">
        <property type="term" value="F:methylglyoxal synthase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0019242">
        <property type="term" value="P:methylglyoxal biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.1380">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004363">
        <property type="entry name" value="Methylgl_synth"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018148">
        <property type="entry name" value="Methylglyoxal_synth_AS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011607">
        <property type="entry name" value="MGS-like_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036914">
        <property type="entry name" value="MGS-like_dom_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30492">
        <property type="entry name" value="PTHR30492"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52335">
        <property type="entry name" value="SSF52335"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01335">
        <property type="entry name" value="METHYLGLYOXAL_SYNTH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51855">
        <property type="entry name" value="MGS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="MGS-like" evidence="2">
        <location>
            <begin position="149"/>
            <end position="290"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00006287"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS51855"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ABX37775.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="290" mass="32381" checksum="7D31C8F74771F733" modified="2008-01-15" version="1">MPIRLGLAANRIHHQTEDAALFGWLRACESGIRELQLGLHAVGRTFDAIQAAGMLASYRGLRRYPYGREGGLMKLVAEVVGVEGDERTIDGAIYLTDPVDPSSIFPEAVALKRQCVIHGKPFLSTVASARDWIEMERIHAGLPRDAGAQRFHDYAQQTLALIAHDALKPTMLDFAARNFELLSRFGRRVGTGTTGQRLNEMAWSRGWPEDRPWVDRYNSGPLGGDAQIADLVLDRRCQRVIFFEDPHVARQHEADIQLLERAVTTVTHDTVCTTSPAVAQRWCDAALMRR</sequence>
</entry>
<entry dataset="Swiss-Prot" created="2009-07-28" modified="2022-08-03" version="90" xmlns="http://uniprot.org/uniprot">
    <accession>A9BNI6</accession>
    <name>PURT_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Formate-dependent phosphoribosylglycinamide formyltransferase</fullName>
            <ecNumber evidence="1">6.3.1.21</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="1">5'-phosphoribosylglycinamide transformylase 2</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="1">Formate-dependent GAR transformylase</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="1">GAR transformylase 2</fullName>
            <shortName evidence="1">GART 2</shortName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="1">Non-folate glycinamide ribonucleotide transformylase</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="1">Phosphoribosylglycinamide formyltransferase 2</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="1" type="primary">purT</name>
        <name type="ordered locus">Daci_5252</name>
    </gene>
    <organism>
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference key="1">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain>DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="1">Involved in the de novo purine biosynthesis. Catalyzes the transfer of formate to 5-phospho-ribosyl-glycinamide (GAR), producing 5-phospho-ribosyl-N-formylglycinamide (FGAR). Formate is provided by PurU via hydrolysis of 10-formyl-tetrahydrofolate.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>ATP + formate + N(1)-(5-phospho-beta-D-ribosyl)glycinamide = ADP + H(+) + N(2)-formyl-N(1)-(5-phospho-beta-D-ribosyl)glycinamide + phosphate</text>
            <dbReference type="Rhea" id="RHEA:24829"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:15740"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:43474"/>
            <dbReference type="ChEBI" id="CHEBI:143788"/>
            <dbReference type="ChEBI" id="CHEBI:147286"/>
            <dbReference type="ChEBI" id="CHEBI:456216"/>
            <dbReference type="EC" id="6.3.1.21"/>
        </reaction>
        <physiologicalReaction direction="left-to-right" evidence="1">
            <dbReference type="Rhea" id="RHEA:24830"/>
        </physiologicalReaction>
    </comment>
    <comment type="pathway">
        <text evidence="1">Purine metabolism; IMP biosynthesis via de novo pathway; N(2)-formyl-N(1)-(5-phospho-D-ribosyl)glycinamide from N(1)-(5-phospho-D-ribosyl)glycinamide (formate route): step 1/1.</text>
    </comment>
    <comment type="subunit">
        <text evidence="1">Homodimer.</text>
    </comment>
    <comment type="similarity">
        <text evidence="1">Belongs to the PurK/PurT family.</text>
    </comment>
    <dbReference type="EC" id="6.3.1.21" evidence="1"/>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX37881.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012207051.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A9BNI6"/>
    <dbReference type="SMR" id="A9BNI6"/>
    <dbReference type="STRING" id="398578.Daci_5252"/>
    <dbReference type="PRIDE" id="A9BNI6"/>
    <dbReference type="EnsemblBacteria" id="ABX37881">
        <property type="protein sequence ID" value="ABX37881"/>
        <property type="gene ID" value="Daci_5252"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_5252"/>
    <dbReference type="eggNOG" id="COG0027">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_011534_1_3_4"/>
    <dbReference type="OMA" id="GMVTMIT"/>
    <dbReference type="UniPathway" id="UPA00074">
        <property type="reaction ID" value="UER00127"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016874">
        <property type="term" value="F:ligase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000287">
        <property type="term" value="F:magnesium ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043815">
        <property type="term" value="F:phosphoribosylglycinamide formyltransferase 2 activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004644">
        <property type="term" value="F:phosphoribosylglycinamide formyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006189">
        <property type="term" value="P:'de novo' IMP biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.1490.20">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01643">
        <property type="entry name" value="PurT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011761">
        <property type="entry name" value="ATP-grasp"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003135">
        <property type="entry name" value="ATP-grasp_carboxylate-amine"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013815">
        <property type="entry name" value="ATP_grasp_subdomain_1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016185">
        <property type="entry name" value="PreATP-grasp_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005862">
        <property type="entry name" value="PurT"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011054">
        <property type="entry name" value="Rudment_hybrid_motif"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02222">
        <property type="entry name" value="ATP-grasp"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51246">
        <property type="entry name" value="SSF51246"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52440">
        <property type="entry name" value="SSF52440"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01142">
        <property type="entry name" value="purT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50975">
        <property type="entry name" value="ATP_GRASP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword id="KW-0067">ATP-binding</keyword>
    <keyword id="KW-0436">Ligase</keyword>
    <keyword id="KW-0460">Magnesium</keyword>
    <keyword id="KW-0479">Metal-binding</keyword>
    <keyword id="KW-0547">Nucleotide-binding</keyword>
    <keyword id="KW-0658">Purine biosynthesis</keyword>
    <keyword id="KW-1185">Reference proteome</keyword>
    <feature type="chain" id="PRO_1000186878" description="Formate-dependent phosphoribosylglycinamide formyltransferase">
        <location>
            <begin position="1"/>
            <end position="405"/>
        </location>
    </feature>
    <feature type="domain" description="ATP-grasp" evidence="1">
        <location>
            <begin position="120"/>
            <end position="320"/>
        </location>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <begin position="22"/>
            <end position="23"/>
        </location>
        <ligand>
            <name>N(1)-(5-phospho-beta-D-ribosyl)glycinamide</name>
            <dbReference type="ChEBI" id="CHEBI:143788"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <position position="82"/>
        </location>
        <ligand>
            <name>N(1)-(5-phospho-beta-D-ribosyl)glycinamide</name>
            <dbReference type="ChEBI" id="CHEBI:143788"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <position position="115"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <position position="162"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <begin position="167"/>
            <end position="172"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <begin position="202"/>
            <end position="205"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <position position="210"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <position position="279"/>
        </location>
        <ligand>
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <position position="291"/>
        </location>
        <ligand>
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <position position="298"/>
        </location>
        <ligand>
            <name>N(1)-(5-phospho-beta-D-ribosyl)glycinamide</name>
            <dbReference type="ChEBI" id="CHEBI:143788"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <position position="367"/>
        </location>
        <ligand>
            <name>N(1)-(5-phospho-beta-D-ribosyl)glycinamide</name>
            <dbReference type="ChEBI" id="CHEBI:143788"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <begin position="374"/>
            <end position="375"/>
        </location>
        <ligand>
            <name>N(1)-(5-phospho-beta-D-ribosyl)glycinamide</name>
            <dbReference type="ChEBI" id="CHEBI:143788"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000255" key="1">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01643"/>
        </source>
    </evidence>
    <sequence length="405" mass="43411" checksum="0CB658AC2980A1F1" modified="2008-01-15" version="1">MTTLGTPYSPHATKVMLLGSGELGKEVLIALQRLGVETIAVDRYENAPGQQVAHHARTITMSDPAQLKALIEAEKPDLVVPEIEAIATPMLEELEAAGVVTVIPTARAARLTMDREGIRRLAAETLGLATSPYRFCDSQQELQAAIDGTDGQPAIGFPCVVKPVMSSSGKGQSKLDGPDDVAKAWDYAMAGGRVSHGRVIVEGFIDFDYEITQLTVRAKGADGQVQTHFCDPIGHIQQSGDYVESWQPHPMHPAALQKSRDIAKAVTDDLGGLGLFGVELFVKGEQVWFSEVSPRPHDTGLVTLATQWQSEFELHARAILGLPVDASLRNPGASAVIYGGQDAEGLVFDGVDEALAVPGTDLRLFGKPESFVKRRMGVALARAQDVEQARTNAKLAAGKVKPRKP</sequence>
</entry>
<entry dataset="Swiss-Prot" created="2009-03-24" modified="2022-08-03" version="82" xmlns="http://uniprot.org/uniprot">
    <accession>A9BNJ8</accession>
    <name>LEPA_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Elongation factor 4</fullName>
            <shortName evidence="1">EF-4</shortName>
            <ecNumber evidence="1">3.6.5.n1</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="1">Ribosomal back-translocase LepA</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="1" type="primary">lepA</name>
        <name type="ordered locus">Daci_5264</name>
    </gene>
    <organism>
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference key="1">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain>DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="1">Required for accurate and efficient protein synthesis under certain stress conditions. May act as a fidelity factor of the translation reaction, by catalyzing a one-codon backward translocation of tRNAs on improperly translocated ribosomes. Back-translocation proceeds from a post-translocation (POST) complex to a pre-translocation (PRE) complex, thus giving elongation factor G a second chance to translocate the tRNAs correctly. Binds to ribosomes in a GTP-dependent manner.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>GTP + H2O = GDP + H(+) + phosphate</text>
            <dbReference type="Rhea" id="RHEA:19669"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:37565"/>
            <dbReference type="ChEBI" id="CHEBI:43474"/>
            <dbReference type="ChEBI" id="CHEBI:58189"/>
            <dbReference type="EC" id="3.6.5.n1"/>
        </reaction>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Cell inner membrane</location>
            <topology evidence="1">Peripheral membrane protein</topology>
            <orientation evidence="1">Cytoplasmic side</orientation>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="1">Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. LepA subfamily.</text>
    </comment>
    <dbReference type="EC" id="3.6.5.n1" evidence="1"/>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX37893.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012207063.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A9BNJ8"/>
    <dbReference type="SMR" id="A9BNJ8"/>
    <dbReference type="STRING" id="398578.Daci_5264"/>
    <dbReference type="PRIDE" id="A9BNJ8"/>
    <dbReference type="EnsemblBacteria" id="ABX37893">
        <property type="protein sequence ID" value="ABX37893"/>
        <property type="gene ID" value="Daci_5264"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_5264"/>
    <dbReference type="eggNOG" id="COG0481">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_009995_3_3_4"/>
    <dbReference type="OMA" id="MVQIAIQ"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005525">
        <property type="term" value="F:GTP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003924">
        <property type="term" value="F:GTPase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043022">
        <property type="term" value="F:ribosome binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003746">
        <property type="term" value="F:translation elongation factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0045727">
        <property type="term" value="P:positive regulation of translation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd03709">
        <property type="entry name" value="lepA_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.70.2570">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00071">
        <property type="entry name" value="LepA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006297">
        <property type="entry name" value="EF-4"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035647">
        <property type="entry name" value="EFG_III/V"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000640">
        <property type="entry name" value="EFG_V-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004161">
        <property type="entry name" value="EFTu-like_2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR031157">
        <property type="entry name" value="G_TR_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038363">
        <property type="entry name" value="LepA_C_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013842">
        <property type="entry name" value="LepA_CTD"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035654">
        <property type="entry name" value="LepA_IV"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005225">
        <property type="entry name" value="Small_GTP-bd_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000795">
        <property type="entry name" value="T_Tr_GTP-bd_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009000">
        <property type="entry name" value="Transl_B-barrel_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43512">
        <property type="entry name" value="PTHR43512"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00679">
        <property type="entry name" value="EFG_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00009">
        <property type="entry name" value="GTP_EFTU"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03144">
        <property type="entry name" value="GTP_EFTU_D2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF06421">
        <property type="entry name" value="LepA_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00315">
        <property type="entry name" value="ELONGATNFCT"/>
    </dbReference>
    <dbReference type="SMART" id="SM00838">
        <property type="entry name" value="EFG_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50447">
        <property type="entry name" value="SSF50447"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54980">
        <property type="entry name" value="SSF54980"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01393">
        <property type="entry name" value="lepA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00231">
        <property type="entry name" value="small_GTP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00301">
        <property type="entry name" value="G_TR_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51722">
        <property type="entry name" value="G_TR_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword id="KW-0997">Cell inner membrane</keyword>
    <keyword id="KW-1003">Cell membrane</keyword>
    <keyword id="KW-0342">GTP-binding</keyword>
    <keyword id="KW-0378">Hydrolase</keyword>
    <keyword id="KW-0472">Membrane</keyword>
    <keyword id="KW-0547">Nucleotide-binding</keyword>
    <keyword id="KW-0648">Protein biosynthesis</keyword>
    <keyword id="KW-1185">Reference proteome</keyword>
    <feature type="chain" id="PRO_1000092392" description="Elongation factor 4">
        <location>
            <begin position="1"/>
            <end position="602"/>
        </location>
    </feature>
    <feature type="domain" description="tr-type G">
        <location>
            <begin position="2"/>
            <end position="184"/>
        </location>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <begin position="14"/>
            <end position="19"/>
        </location>
        <ligand>
            <name>GTP</name>
            <dbReference type="ChEBI" id="CHEBI:37565"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <begin position="131"/>
            <end position="134"/>
        </location>
        <ligand>
            <name>GTP</name>
            <dbReference type="ChEBI" id="CHEBI:37565"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000255" key="1">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00071"/>
        </source>
    </evidence>
    <sequence length="602" mass="66442" checksum="662E73E85BD6E277" modified="2008-01-15" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="70" xmlns="http://uniprot.org/uniprot">
    <accession>A9BNL3</accession>
    <name>A9BNL3_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Rieske (2Fe-2S) domain protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ordered locus">Daci_5279</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="6" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX37908.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_5279"/>
    <dbReference type="PRIDE" id="A9BNL3"/>
    <dbReference type="EnsemblBacteria" id="ABX37908">
        <property type="protein sequence ID" value="ABX37908"/>
        <property type="gene ID" value="Daci_5279"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_5279"/>
    <dbReference type="eggNOG" id="COG2146">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_055690_4_2_4"/>
    <dbReference type="OMA" id="YLNQCAH"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051537">
        <property type="term" value="F:2 iron, 2 sulfur cluster binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.102.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017941">
        <property type="entry name" value="Rieske_2Fe-2S"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036922">
        <property type="entry name" value="Rieske_2Fe-2S_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00355">
        <property type="entry name" value="Rieske"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50022">
        <property type="entry name" value="SSF50022"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51296">
        <property type="entry name" value="RIESKE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0408">Iron</keyword>
    <keyword evidence="3" id="KW-0411">Iron-sulfur</keyword>
    <keyword evidence="1" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Rieske" evidence="4">
        <location>
            <begin position="8"/>
            <end position="113"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023004"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023014"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="PROSITE" id="PS51296"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="ABX37908.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="124" mass="13426" checksum="97A4349B384A72B3" modified="2008-01-15" version="1">MPLTVERIVLCASDALQEGANAVPFDVVYAGHACRAFAIRFEGQVHAYLNRCTHVAMEMDYQPDRFFDDTGRWLLCATHGAAYAPDSGACAGGPCRGGLVKISLSESAGLVHWHTADNLKPVEF</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="93" xmlns="http://uniprot.org/uniprot">
    <accession>A9BNP3</accession>
    <name>A9BNP3_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Transcriptional regulator, AraC family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Daci_5309</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="4" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX37938.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012207107.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_5309"/>
    <dbReference type="PRIDE" id="A9BNP3"/>
    <dbReference type="EnsemblBacteria" id="ABX37938">
        <property type="protein sequence ID" value="ABX37938"/>
        <property type="gene ID" value="Daci_5309"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_5309"/>
    <dbReference type="eggNOG" id="COG2207">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_049704_2_2_4"/>
    <dbReference type="OMA" id="FEYWNDV"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003700">
        <property type="term" value="F:DNA-binding transcription factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043565">
        <property type="term" value="F:sequence-specific DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035418">
        <property type="entry name" value="AraC-bd_2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009057">
        <property type="entry name" value="Homeobox-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018060">
        <property type="entry name" value="HTH_AraC"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018062">
        <property type="entry name" value="HTH_AraC-typ_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020449">
        <property type="entry name" value="Tscrpt_reg_HTH_AraC-type"/>
    </dbReference>
    <dbReference type="Pfam" id="PF14525">
        <property type="entry name" value="AraC_binding_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12833">
        <property type="entry name" value="HTH_18"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00032">
        <property type="entry name" value="HTHARAC"/>
    </dbReference>
    <dbReference type="SMART" id="SM00342">
        <property type="entry name" value="HTH_ARAC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46689">
        <property type="entry name" value="SSF46689"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00041">
        <property type="entry name" value="HTH_ARAC_FAMILY_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01124">
        <property type="entry name" value="HTH_ARAC_FAMILY_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HTH araC/xylS-type" evidence="2">
        <location>
            <begin position="215"/>
            <end position="314"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS01124"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ABX37938.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="314" mass="34681" checksum="5C68C94279D55A2F" modified="2008-01-15" version="1">MQLEYSTHSQEPRHRFDYWHEVVCRHCIPADSHRAQGDAAGPGGFGATLSVRSLGLLEISAMSAPSHRWVRNAAHLRLHARDELWLGYLLQGQAEVRQGGQVARLSAGNLVLYDASQPFEFSVAPRDILLMRIPRSELLNRFARAPLHAGRVLHGHAPAVAPLRAMLGEAIAMPPAPHGDALAQRFGMALLDVLALALEMQEMAVQPRAERDLHGRIQAFIQDNLGSPELSLQWLAQQHNVSPRTVTRAFARRNQTPMGLVWQLRLQASRQALMQGRCSSVTEAAFAHGFSDAAHFSRAFRKAFGCTPRSLLAA</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="71" xmlns="http://uniprot.org/uniprot">
    <accession>A9BP41</accession>
    <name>A9BP41_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="8">Na+/solute symporter</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="8" type="ordered locus">Daci_5457</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="9" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2 6">Belongs to the sodium:solute symporter (SSF) (TC 2.A.21) family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX38086.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012207255.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_5457"/>
    <dbReference type="PRIDE" id="A9BP41"/>
    <dbReference type="EnsemblBacteria" id="ABX38086">
        <property type="protein sequence ID" value="ABX38086"/>
        <property type="gene ID" value="Daci_5457"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_5457"/>
    <dbReference type="eggNOG" id="COG0591">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_018808_15_3_4"/>
    <dbReference type="OMA" id="GWWGMRR"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0022857">
        <property type="term" value="F:transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.1730.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038377">
        <property type="entry name" value="Na/Glc_symporter_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001734">
        <property type="entry name" value="Na/solute_symporter"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00474">
        <property type="entry name" value="SSF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50283">
        <property type="entry name" value="NA_SOLUT_SYMP_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5 7" id="KW-0472">Membrane</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 7" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="4 7" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="6"/>
            <end position="25"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="37"/>
            <end position="56"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="76"/>
            <end position="94"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="115"/>
            <end position="140"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="146"/>
            <end position="166"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="178"/>
            <end position="195"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="222"/>
            <end position="241"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="262"/>
            <end position="287"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="314"/>
            <end position="339"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="360"/>
            <end position="380"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="392"/>
            <end position="412"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="419"/>
            <end position="436"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="448"/>
            <end position="469"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00006434"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="RuleBase" id="RU362091"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="ABX38086.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="482" mass="52419" checksum="40CE884595C87329" modified="2008-01-15" version="1">MLLSMVIAYLFVTIAIGLWAARRVKNTADFAIAGRHLPMYMIITTTFATWFGSEIVLGVPAKFIEGGLRGVVEDPFGAGMCLILVGLFFAGKLYRMTLLTISDYYRHRYGRSIEIVCSLIIMLSYLGWVSAQVTALGLVFNLLSGGTVSISMGMAIGVVSILAYTLFGGMWSVAVTDFLQMIILVVGLVVLAWFASDMAGGAGKVIDLAVSRDLFQFWPEPSWHEILFFFGAAITMMLGSIPQQDVFQRVMSAHSEKAATRGTVIGGSAYICFAFVPMFLVASALIIMPGETAELLKQDPQKVLPTLVMDKMPFVMQVLFFGALLSAIKSCASATLLAPSVTFTENIWRQFRTQASDREMLLAMRISVLVFSICVLAYSIKMEGTPIYELVSSAYQVPLVGAFVPLVFGLYWKRATTQGAICAVALGIGVWVAFMATPALHEAFPQQLAGLLAAVTGMVAGSLAPQWLANRSADILEFRPER</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="94" xmlns="http://uniprot.org/uniprot">
    <accession>A9BP99</accession>
    <name>A9BP99_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Two component transcriptional regulator, winged helix family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ordered locus">Daci_0016</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="6" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX32663.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012201956.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_0016"/>
    <dbReference type="PRIDE" id="A9BP99"/>
    <dbReference type="EnsemblBacteria" id="ABX32663">
        <property type="protein sequence ID" value="ABX32663"/>
        <property type="gene ID" value="Daci_0016"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_0016"/>
    <dbReference type="eggNOG" id="COG0745">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_000445_30_1_4"/>
    <dbReference type="OMA" id="LAEVWDW"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000160">
        <property type="term" value="P:phosphorelay signal transduction system"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006355">
        <property type="term" value="P:regulation of transcription, DNA-templated"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd00383">
        <property type="entry name" value="trans_reg_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011006">
        <property type="entry name" value="CheY-like_superfamily"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001867">
        <property type="entry name" value="OmpR/PhoB-type_DNA-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001789">
        <property type="entry name" value="Sig_transdc_resp-reg_receiver"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR039420">
        <property type="entry name" value="WalR-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR48111">
        <property type="entry name" value="PTHR48111"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00072">
        <property type="entry name" value="Response_reg"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00486">
        <property type="entry name" value="Trans_reg_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00448">
        <property type="entry name" value="REC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00862">
        <property type="entry name" value="Trans_reg_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52172">
        <property type="entry name" value="SSF52172"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51755">
        <property type="entry name" value="OMPR_PHOB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50110">
        <property type="entry name" value="RESPONSE_REGULATORY"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="1" id="KW-0597">Phosphoprotein</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Response regulatory" evidence="3">
        <location>
            <begin position="31"/>
            <end position="146"/>
        </location>
    </feature>
    <feature type="domain" description="OmpR/PhoB-type" evidence="4">
        <location>
            <begin position="155"/>
            <end position="253"/>
        </location>
    </feature>
    <feature type="DNA-binding region" description="OmpR/PhoB-type" evidence="2">
        <location>
            <begin position="155"/>
            <end position="253"/>
        </location>
    </feature>
    <feature type="modified residue" description="4-aspartylphosphate" evidence="1">
        <location>
            <position position="80"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00169"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU01091"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="PROSITE" id="PS50110"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="PROSITE" id="PS51755"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="ABX32663.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="262" mass="28957" checksum="C8ED74522F9E3648" modified="2008-01-15" version="1">MPASPPISAESGAPYSVCLSFESGPAARMYRYLIIEDDALNARYIAEGLRQQGAQVAVCSDGVQGIAMAVGESWDVIILDRMLPNGFDGLQILQTLRSMGKQTPVLVLSALSATDERVRGLKAGCDDYLTKPFAFSELSARLEALVRRAQIPAPAREMRLADLRLNLLTRSAERAGQPLALQPREFRLLAFLMQHAHQIVTRTMLLESVWDYRFDPQTNVIDVHISRLRGKVDKGFEPALIHTVRGVGYSLSDRPQDLPQVA</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="79" xmlns="http://uniprot.org/uniprot">
    <accession>A9BPA8</accession>
    <name>A9BPA8_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="7">Acetyl-CoA acetyltransferase</fullName>
            <ecNumber evidence="7">2.3.1.9</ecNumber>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ordered locus">Daci_0025</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="8" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1 4">Belongs to the thiolase-like superfamily. Thiolase family.</text>
    </comment>
    <dbReference type="EC" id="2.3.1.9" evidence="7"/>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX32672.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012201965.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_0025"/>
    <dbReference type="PRIDE" id="A9BPA8"/>
    <dbReference type="EnsemblBacteria" id="ABX32672">
        <property type="protein sequence ID" value="ABX32672"/>
        <property type="gene ID" value="Daci_0025"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_0025"/>
    <dbReference type="eggNOG" id="COG0183">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_031026_0_0_4"/>
    <dbReference type="OMA" id="CPIETPA"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003985">
        <property type="term" value="F:acetyl-CoA C-acetyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="CDD" id="cd00751">
        <property type="entry name" value="thiolase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.47.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002155">
        <property type="entry name" value="Thiolase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016039">
        <property type="entry name" value="Thiolase-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020615">
        <property type="entry name" value="Thiolase_acyl_enz_int_AS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020610">
        <property type="entry name" value="Thiolase_AS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020617">
        <property type="entry name" value="Thiolase_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020616">
        <property type="entry name" value="Thiolase_N"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02803">
        <property type="entry name" value="Thiolase_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00108">
        <property type="entry name" value="Thiolase_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF000429">
        <property type="entry name" value="Ac-CoA_Ac_transf"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53901">
        <property type="entry name" value="SSF53901"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01930">
        <property type="entry name" value="AcCoA-C-Actrans"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00098">
        <property type="entry name" value="THIOLASE_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00099">
        <property type="entry name" value="THIOLASE_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4 7" id="KW-0012">Acyltransferase</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 4 7" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Thiolase_N" evidence="5">
        <location>
            <begin position="6"/>
            <end position="263"/>
        </location>
    </feature>
    <feature type="domain" description="Thiolase_C" evidence="6">
        <location>
            <begin position="272"/>
            <end position="394"/>
        </location>
    </feature>
    <feature type="active site" description="Acyl-thioester intermediate" evidence="3">
        <location>
            <position position="91"/>
        </location>
    </feature>
    <feature type="active site" description="Proton acceptor" evidence="3">
        <location>
            <position position="351"/>
        </location>
    </feature>
    <feature type="active site" description="Proton acceptor" evidence="3">
        <location>
            <position position="381"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00010982"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="PIRSR" id="PIRSR000429-1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="RuleBase" id="RU003557"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="Pfam" id="PF00108"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="Pfam" id="PF02803"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="ABX32672.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="395" mass="40721" checksum="F3E3B98CFD970FA3" modified="2008-01-15" version="1">MTPRDVFVVGTARTAIGTFGGSLKDVPNTQLATTAVKAAIERAGLAPDAIGHVVMGNVIPTDTKDAYLSRVAAIDAGCPIETPAFNVNRLCGSGLQAIVSAAQAIALGDCDVAIGGGSESMSRGPYFDQAARWGARMGDAKSIDYMLGILHDPWQKMHMGITAENVAERYHISREMQDELAAASHQRAAAAIAAGHFKEQIVPVEIATRKGVVVFDTDEHVRASTTIELLSTMKPAFRKEGGSVTAGNASGINDGAAAVALAAGDRVAALGLKPLARLVGYAHAGVDPAYMGIGPVPATQKVLQRTGLKIADMDVIEANEAFAAQACAVIQQLGMDPAKVNPNGSGISLGHPVGATGAIITTKAIAELQRTGGRYALVTMCIGGGQGISAIFERV</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="65" xmlns="http://uniprot.org/uniprot">
    <accession>A9BPF0</accession>
    <name>A9BPF0_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="7">Porin Gram-negative type</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ordered locus">Daci_0171</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="8" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX32817.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012202110.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_0171"/>
    <dbReference type="PRIDE" id="A9BPF0"/>
    <dbReference type="EnsemblBacteria" id="ABX32817">
        <property type="protein sequence ID" value="ABX32817"/>
        <property type="gene ID" value="Daci_0171"/>
    </dbReference>
    <dbReference type="GeneID" id="60690576"/>
    <dbReference type="KEGG" id="dac:Daci_0171"/>
    <dbReference type="eggNOG" id="COG3203">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_038238_1_1_4"/>
    <dbReference type="OMA" id="NFGMNAT"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046930">
        <property type="term" value="C:pore complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015288">
        <property type="term" value="F:porin activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006811">
        <property type="term" value="P:ion transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd00342">
        <property type="entry name" value="gram_neg_porins"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.160.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR033900">
        <property type="entry name" value="Gram_neg_porin_domain"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023614">
        <property type="entry name" value="Porin_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002299">
        <property type="entry name" value="Porin_Neis"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13609">
        <property type="entry name" value="Porin_4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00184">
        <property type="entry name" value="NEISSPPORIN"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-0406">Ion transport</keyword>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-0626">Porin</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="5" id="KW-0732">Signal</keyword>
    <keyword evidence="2" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1134">Transmembrane beta strand</keyword>
    <keyword evidence="4" id="KW-0813">Transport</keyword>
    <feature type="signal peptide" evidence="5">
        <location>
            <begin position="1"/>
            <end position="22"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5002732379" evidence="5">
        <location>
            <begin position="23"/>
            <end position="332"/>
        </location>
    </feature>
    <feature type="domain" description="Porin_4" evidence="6">
        <location>
            <begin position="11"/>
            <end position="317"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022452"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023065"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023114"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="Pfam" id="PF13609"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="ABX32817.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="332" mass="35978" checksum="2181A6C2D9D1B887" modified="2008-01-15" version="1">MRCTSRLTLASLAVAAALPVAAQSSATGSNVTISGYLDAGVFRDFDKTSKLGTIQRSNLAIAGFEDLGGGLKATFRLSTRFDLDTGLTEDYPKKPFWHDESTVGLQGSWGHLRLGRALSAMWSQEWQFDPWGNFNRIASPAWHMAHYLTPTDRASNNGSPEYGRMSNGVFYDSPKFGGFSLHLSASPERTEAPGRQGRARSVSVNYDQGAVAAMLAHERNGSGDTDLYMGGKYRIGTAAVMLAYDRSKSGTPGTGPDKSRMVSLGATYGIGATTLKASYARQRLDRDTNNMLSLGAEYALSKRTMLYTSLGHQRYENQSSRTAFGVGMAHSF</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-05-25" version="86" xmlns="http://uniprot.org/uniprot">
    <accession>A9BPN6</accession>
    <name>A9BPN6_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="9">Polar amino acid ABC transporter, inner membrane subunit</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="9" type="ordered locus">Daci_0359</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="9 10" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="10" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="7">Cell membrane</location>
            <topology evidence="7">Multi-pass membrane protein</topology>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the binding-protein-dependent transport system permease family. HisMQ subfamily.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX33005.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012202298.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_0359"/>
    <dbReference type="EnsemblBacteria" id="ABX33005">
        <property type="protein sequence ID" value="ABX33005"/>
        <property type="gene ID" value="Daci_0359"/>
    </dbReference>
    <dbReference type="GeneID" id="60690764"/>
    <dbReference type="KEGG" id="dac:Daci_0359"/>
    <dbReference type="eggNOG" id="COG0765">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_019602_1_1_4"/>
    <dbReference type="OMA" id="FFQNAWY"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043190">
        <property type="term" value="C:ATP-binding cassette (ABC) transporter complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0022857">
        <property type="term" value="F:transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006865">
        <property type="term" value="P:amino acid transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd06261">
        <property type="entry name" value="TM_PBP2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.3720.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010065">
        <property type="entry name" value="AA_ABC_transptr_permease_3TM"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043429">
        <property type="entry name" value="ArtM/GltK/GlnP/TcyL/YhdX-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000515">
        <property type="entry name" value="MetI-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035906">
        <property type="entry name" value="MetI-like_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30614">
        <property type="entry name" value="PTHR30614"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00528">
        <property type="entry name" value="BPD_transp_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF161098">
        <property type="entry name" value="SSF161098"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01726">
        <property type="entry name" value="HEQRo_perm_3TM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50928">
        <property type="entry name" value="ABC_TM1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-0029">Amino-acid transport</keyword>
    <keyword evidence="6 7" id="KW-0472">Membrane</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 7" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="5 7" id="KW-1133">Transmembrane helix</keyword>
    <keyword evidence="7" id="KW-0813">Transport</keyword>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="20"/>
            <end position="40"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="60"/>
            <end position="80"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="92"/>
            <end position="115"/>
        </location>
    </feature>
    <feature type="domain" description="ABC transmembrane type-1" evidence="8">
        <location>
            <begin position="56"/>
            <end position="246"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00010072"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022970"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="RuleBase" id="RU363032"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="PROSITE" id="PS50928"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="ABX33005.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="260" mass="27673" checksum="7FF2C72A75909BB4" modified="2008-01-15" version="1">MLTVLWPAHWSRSQRSNATLVTALLLMVLVVSLLGQLLSLLPEPIGSNADTFAEGARTTLYLTLVSGAAGLVLGIAAALARTSRTAALRWAAGFYVWAIRGTPLLVQILFIYFALPVLIPGLNLPDFAAACIALALNVGAYNAEAVRAGLQAVPRGQAEAARALGLPRICVFMDVVFPQAFKISLPPLVSNFVALLKDSSLAYAIGVVELTNVGNRIQSATFQPVETLVTVGVTYLVLTTLVTQVTAAVEYRFDVEGRHK</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="78" xmlns="http://uniprot.org/uniprot">
    <accession>A9BPP3</accession>
    <name>A9BPP3_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="8">ABC transporter related</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="8" type="ordered locus">Daci_0366</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="9" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX33012.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012202305.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_0366"/>
    <dbReference type="PRIDE" id="A9BPP3"/>
    <dbReference type="EnsemblBacteria" id="ABX33012">
        <property type="protein sequence ID" value="ABX33012"/>
        <property type="gene ID" value="Daci_0366"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_0366"/>
    <dbReference type="eggNOG" id="COG1127">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_000604_1_22_4"/>
    <dbReference type="OMA" id="RMKDFDA"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003593">
        <property type="entry name" value="AAA+_ATPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003439">
        <property type="entry name" value="ABC_transporter-like_ATP-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017871">
        <property type="entry name" value="ABC_transporter-like_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00005">
        <property type="entry name" value="ABC_tran"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00382">
        <property type="entry name" value="AAA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00211">
        <property type="entry name" value="ABC_TRANSPORTER_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50893">
        <property type="entry name" value="ABC_TRANSPORTER_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3 6" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="1" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="5" id="KW-0472">Membrane</keyword>
    <keyword evidence="2 6" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4" id="KW-1278">Translocase</keyword>
    <feature type="domain" description="ABC transporter" evidence="7">
        <location>
            <begin position="18"/>
            <end position="256"/>
        </location>
    </feature>
    <feature type="binding site" evidence="6">
        <location>
            <begin position="54"/>
            <end position="61"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022967"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00434"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="PROSITE" id="PS50893"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="ABX33012.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="267" mass="28859" checksum="197368EB7696B3EC" modified="2008-01-15" version="1">MAMDTETSSTPAADEPIVRIAGLWSVFGEGENAFAVHQDLDLDVQRGEMLSIVGGSGTGKTVLLRQMLGLLEPTKGRVEVLGRPASEMGREGAASRVGMLFQHGALYSAFSVLDNVAFALREQGTLPDDLVRDAALVKLQMVGLKPEHASRMPADLSGGMIKRVALARALIMDPPLLLLDEPTAGLDPTSSDEFCELLRELRAELGLTVIMVTHDLDTLFALSSRVAVLAEKKVLVSGPPREVAEFKHPFIEHFFQGERGRRAMSTV</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-01-19" version="51" xmlns="http://uniprot.org/uniprot">
    <accession>A9BPP9</accession>
    <name>A9BPP9_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="7">UPF0056 inner membrane protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="8" type="ordered locus">Daci_0372</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="9" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="7">Cell inner membrane</location>
            <topology evidence="7">Multi-pass membrane protein</topology>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2 7">Belongs to the UPF0056 (MarC) family.</text>
    </comment>
    <comment type="caution">
        <text evidence="7">Lacks conserved residue(s) required for the propagation of feature annotation.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX33018.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012202311.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="ABX33018">
        <property type="protein sequence ID" value="ABX33018"/>
        <property type="gene ID" value="Daci_0372"/>
    </dbReference>
    <dbReference type="GeneID" id="60690777"/>
    <dbReference type="KEGG" id="dac:Daci_0372"/>
    <dbReference type="eggNOG" id="COG2095">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_079909_2_1_4"/>
    <dbReference type="OMA" id="LFVIMDP"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002771">
        <property type="entry name" value="Multi_antbiot-R_MarC"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33508">
        <property type="entry name" value="PTHR33508"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01914">
        <property type="entry name" value="MarC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00427">
        <property type="entry name" value="TIGR00427"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="6 7" id="KW-0472">Membrane</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4 7" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="5 7" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="6"/>
            <end position="26"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="38"/>
            <end position="59"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="113"/>
            <end position="136"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="142"/>
            <end position="166"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="187"/>
            <end position="209"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00009784"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="RuleBase" id="RU362048"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="ABX33018.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="215" mass="22576" checksum="AB9CDFDA9B38AE50" modified="2008-01-15" version="1">MDLKPLITLVAIINPLAIVPFFIHYTEGFSAQQRQQTIRTAALASFCVIAACAIIGLQVLDFFNISLQSFQVGGGLLLLISAMNMLNARPAEERPNAPTLVAGAEKAAMGNSIAVVPLTIPLLTGPASMSTVVIYADQARTIWQHLALVGYGVVVALVVMVCFSLADPIARVLGKTGINVMTRLMGLILAALAVEVMAGGLVKIFPILASPAIVP</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="88" xmlns="http://uniprot.org/uniprot">
    <accession>A9BPR6</accession>
    <name>A9BPR6_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="6 7 8">Elongation factor Tu</fullName>
            <shortName evidence="7">EF-Tu</shortName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="7" type="primary">tuf</name>
        <name evidence="10" type="ordered locus">Daci_0389</name>
    </gene>
    <organism evidence="10 11">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="10 11" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="11">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="11" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="11">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="7">This protein promotes the GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis.</text>
    </comment>
    <comment type="subunit">
        <text evidence="7">Monomer.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="7">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="1 7">Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. EF-Tu/EF-1A subfamily.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX33035.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012202328.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_0389"/>
    <dbReference type="PRIDE" id="A9BPR6"/>
    <dbReference type="EnsemblBacteria" id="ABX33035">
        <property type="protein sequence ID" value="ABX33035"/>
        <property type="gene ID" value="Daci_0389"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_0389"/>
    <dbReference type="eggNOG" id="COG0050">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_007265_0_0_4"/>
    <dbReference type="OMA" id="ERPHCNV"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005525">
        <property type="term" value="F:GTP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003924">
        <property type="term" value="F:GTPase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016779">
        <property type="term" value="F:nucleotidyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003746">
        <property type="term" value="F:translation elongation factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd01884">
        <property type="entry name" value="EF_Tu"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="CDD" id="cd03697">
        <property type="entry name" value="EFTU_II"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00118_B">
        <property type="entry name" value="EF_Tu_B"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041709">
        <property type="entry name" value="EF-Tu_GTP-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004161">
        <property type="entry name" value="EFTu-like_2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR033720">
        <property type="entry name" value="EFTU_2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR031157">
        <property type="entry name" value="G_TR_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005225">
        <property type="entry name" value="Small_GTP-bd_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000795">
        <property type="entry name" value="T_Tr_GTP-bd_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009000">
        <property type="entry name" value="Transl_B-barrel_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009001">
        <property type="entry name" value="Transl_elong_EF1A/Init_IF2_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004541">
        <property type="entry name" value="Transl_elong_EFTu/EF1A_bac/org"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004160">
        <property type="entry name" value="Transl_elong_EFTu/EF1A_C"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00009">
        <property type="entry name" value="GTP_EFTU"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03144">
        <property type="entry name" value="GTP_EFTU_D2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03143">
        <property type="entry name" value="GTP_EFTU_D3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00315">
        <property type="entry name" value="ELONGATNFCT"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50447">
        <property type="entry name" value="SSF50447"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50465">
        <property type="entry name" value="SSF50465"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00485">
        <property type="entry name" value="EF-Tu"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00231">
        <property type="entry name" value="small_GTP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00301">
        <property type="entry name" value="G_TR_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51722">
        <property type="entry name" value="G_TR_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="7" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="3 7 10" id="KW-0251">Elongation factor</keyword>
    <keyword evidence="5 7" id="KW-0342">GTP-binding</keyword>
    <keyword evidence="2 7" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="10" id="KW-0548">Nucleotidyltransferase</keyword>
    <keyword evidence="4 7" id="KW-0648">Protein biosynthesis</keyword>
    <keyword evidence="11" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="10" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Tr-type G" evidence="9">
        <location>
            <begin position="10"/>
            <end position="206"/>
        </location>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <begin position="19"/>
            <end position="26"/>
        </location>
        <ligand>
            <name>GTP</name>
            <dbReference type="ChEBI" id="CHEBI:37565"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <begin position="81"/>
            <end position="85"/>
        </location>
        <ligand>
            <name>GTP</name>
            <dbReference type="ChEBI" id="CHEBI:37565"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="7">
        <location>
            <begin position="136"/>
            <end position="139"/>
        </location>
        <ligand>
            <name>GTP</name>
            <dbReference type="ChEBI" id="CHEBI:37565"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00007249"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022768"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022917"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023134"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00029554"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00118"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="RuleBase" id="RU004061"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="9">
        <source>
            <dbReference type="PROSITE" id="PS51722"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="EMBL" id="ABX33035.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="396" mass="43095" checksum="79A123DB2D583099" modified="2008-01-15" version="1">MAKEKFQRNKPHVNVGTIGHVDHGKTTLTAAIATVLSKKFGGEAKAYDQIDAAPEEKARGITINTAHVEYETAGRHYAHVDCPGHADYVKNMITGAAQMDGAILVCSAADGPMPQTREHILLARQVGVPYIIVFLNKCDMVDDEELLELVEMEVRELLAKYDFPGDDTPIIRGSAKLALEGDQSDKGEAAILRLAEALDSYIPTPERAVDGAFAMPVEDVFSISGRGTVVTGRIERGIIKVGEEIEIVGIRDTQKTIVTGVEMFRKLLDQGQAGDNVGLLLRGTKREDVERGQVLCKPGSIKPHTHFTAEVYVLSKDEGGRHTPFFNNYRPQFYFRTTDVTGSIELPADKEMVMPGDNVSITVKLIAPIAMEEGLRFAIREGGRTVGAGVVAKIIA</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2021-06-02" version="45" xmlns="http://uniprot.org/uniprot">
    <accession>A9BPZ3</accession>
    <name>A9BPZ3_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="8">GtrA family protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="8" type="ordered locus">Daci_0562</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="9" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the GtrA family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX33208.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012202494.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_0562"/>
    <dbReference type="EnsemblBacteria" id="ABX33208">
        <property type="protein sequence ID" value="ABX33208"/>
        <property type="gene ID" value="Daci_0562"/>
    </dbReference>
    <dbReference type="GeneID" id="60690905"/>
    <dbReference type="KEGG" id="dac:Daci_0562"/>
    <dbReference type="eggNOG" id="COG2246">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_083873_6_4_4"/>
    <dbReference type="OMA" id="HWHYFWS"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000271">
        <property type="term" value="P:polysaccharide biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007267">
        <property type="entry name" value="GtrA"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04138">
        <property type="entry name" value="GtrA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5 6" id="KW-0472">Membrane</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 6" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="4 6" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="17"/>
            <end position="36"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="48"/>
            <end position="69"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="81"/>
            <end position="100"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="106"/>
            <end position="130"/>
        </location>
    </feature>
    <feature type="domain" description="GtrA" evidence="7">
        <location>
            <begin position="16"/>
            <end position="131"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00009399"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="Pfam" id="PF04138"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="ABX33208.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="140" mass="15284" checksum="0A3F457F04B22555" modified="2008-01-15" version="1">MHDVIAQLRRLPQALQFVLVGGCAAATHLAVVALLVQRVGMAPLHANVLAFLVAFVVSYNGHALFTFVQAGAQGWAVAGKYFAVACASFVANELLYWVALHWLHWHYFWSLALVLVLVAVGTFVFAKFWAFAAPGRKESS</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="77" xmlns="http://uniprot.org/uniprot">
    <accession>A9BQ05</accession>
    <name>A9BQ05_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="12">ABC transporter related</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="12" type="ordered locus">Daci_0574</name>
    </gene>
    <organism evidence="12 13">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="12 13" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="13">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="13" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="13">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX33220.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012202506.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_0574"/>
    <dbReference type="PRIDE" id="A9BQ05"/>
    <dbReference type="EnsemblBacteria" id="ABX33220">
        <property type="protein sequence ID" value="ABX33220"/>
        <property type="gene ID" value="Daci_0574"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_0574"/>
    <dbReference type="eggNOG" id="COG0411">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="eggNOG" id="COG4177">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_006313_3_2_4"/>
    <dbReference type="OMA" id="FWIVLLD"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015658">
        <property type="term" value="F:branched-chain amino acid transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd06581">
        <property type="entry name" value="TM_PBP1_LivM_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003593">
        <property type="entry name" value="AAA+_ATPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001851">
        <property type="entry name" value="ABC_transp_permease"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003439">
        <property type="entry name" value="ABC_transporter-like_ATP-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR032823">
        <property type="entry name" value="BCA_ABC_TP_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043428">
        <property type="entry name" value="LivM-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00005">
        <property type="entry name" value="ABC_tran"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12399">
        <property type="entry name" value="BCA_ABC_TP_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02653">
        <property type="entry name" value="BPD_transp_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00382">
        <property type="entry name" value="AAA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50893">
        <property type="entry name" value="ABC_TRANSPORTER_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="5 9" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="2" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="8 10" id="KW-0472">Membrane</keyword>
    <keyword evidence="4 9" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="13" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="6" id="KW-1278">Translocase</keyword>
    <keyword evidence="3 10" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="7 10" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="10">
        <location>
            <begin position="20"/>
            <end position="39"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="10">
        <location>
            <begin position="45"/>
            <end position="64"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="10">
        <location>
            <begin position="76"/>
            <end position="102"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="10">
        <location>
            <begin position="108"/>
            <end position="130"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="10">
        <location>
            <begin position="137"/>
            <end position="154"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="10">
        <location>
            <begin position="184"/>
            <end position="204"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="10">
        <location>
            <begin position="234"/>
            <end position="252"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="10">
        <location>
            <begin position="272"/>
            <end position="296"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="10">
        <location>
            <begin position="303"/>
            <end position="327"/>
        </location>
    </feature>
    <feature type="domain" description="ABC transporter" evidence="11">
        <location>
            <begin position="374"/>
            <end position="619"/>
        </location>
    </feature>
    <feature type="binding site" evidence="9">
        <location>
            <begin position="406"/>
            <end position="413"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022967"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00434"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="11">
        <source>
            <dbReference type="PROSITE" id="PS50893"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="EMBL" id="ABX33220.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="13">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="630" mass="66255" checksum="BFC5D39110DB3711" modified="2008-01-15" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="63" xmlns="http://uniprot.org/uniprot">
    <accession>A9BQ32</accession>
    <name>A9BQ32_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="3 7">Protein phosphatase CheZ</fullName>
            <ecNumber evidence="7">3.1.3.-</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="6 7">Chemotaxis protein CheZ</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="10" type="ordered locus">Daci_0601</name>
    </gene>
    <organism evidence="10 11">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="10 11" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="11">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="11" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="11">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="7">Plays an important role in bacterial chemotaxis signal transduction pathway by accelerating the dephosphorylation of phosphorylated CheY (CheY-P).</text>
    </comment>
    <comment type="subunit">
        <text evidence="7">Homodimer.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1 7">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2 7">Belongs to the CheZ family.</text>
    </comment>
    <dbReference type="EC" id="3.1.3.-" evidence="7"/>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX33247.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012202533.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_0601"/>
    <dbReference type="PRIDE" id="A9BQ32"/>
    <dbReference type="EnsemblBacteria" id="ABX33247">
        <property type="protein sequence ID" value="ABX33247"/>
        <property type="gene ID" value="Daci_0601"/>
    </dbReference>
    <dbReference type="GeneID" id="60690943"/>
    <dbReference type="KEGG" id="dac:Daci_0601"/>
    <dbReference type="eggNOG" id="COG3143">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_080718_1_0_4"/>
    <dbReference type="OMA" id="EGPQIHA"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009288">
        <property type="term" value="C:bacterial-type flagellum"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004721">
        <property type="term" value="F:phosphoprotein phosphatase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0097588">
        <property type="term" value="P:archaeal or bacterial-type flagellum-dependent cell motility"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006935">
        <property type="term" value="P:chemotaxis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0050920">
        <property type="term" value="P:regulation of chemotaxis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007439">
        <property type="entry name" value="Chemotax_Pase_CheZ"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04344">
        <property type="entry name" value="CheZ"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF002884">
        <property type="entry name" value="CheZ"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4 7" id="KW-0145">Chemotaxis</keyword>
    <keyword evidence="7" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="5 7" id="KW-0283">Flagellar rotation</keyword>
    <keyword evidence="7" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="7" id="KW-0904">Protein phosphatase</keyword>
    <keyword evidence="11" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="9">
        <location>
            <begin position="170"/>
            <end position="192"/>
        </location>
    </feature>
    <feature type="site" description="Enhances dephosphorylation of CheY-P" evidence="8">
        <location>
            <position position="133"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004496"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00005908"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00018484"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022500"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022779"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00029599"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="PIRNR" id="PIRNR002884"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="PIRSR" id="PIRSR002884-1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="EMBL" id="ABX33247.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="204" mass="22516" checksum="853CD65E58341B01" modified="2008-01-15" version="1">MSNPDVPDSVHYKVGVLTRQLHDSLNELGYADRLRGSMGELPDAQSRLSYIARLTGEAAEKVLNRVELAKVQQDRLAERVRAMRAQMVEDPVAAVAKGRVMNFLEEVEQGTQQADEHLTEIMMSQDFHDLTGQVIARVVSLAADLEDQLVQLLIQTSPNPQQTALEPLEKPKEHLAGPVVDPEKTPDVVTSQSQVDDLLASLGF</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="72" xmlns="http://uniprot.org/uniprot">
    <accession>A9BQ43</accession>
    <name>A9BQ43_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Short-chain dehydrogenase/reductase SDR</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Daci_0612</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="2" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX33258.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012202544.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_0612"/>
    <dbReference type="PRIDE" id="A9BQ43"/>
    <dbReference type="EnsemblBacteria" id="ABX33258">
        <property type="protein sequence ID" value="ABX33258"/>
        <property type="gene ID" value="Daci_0612"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_0612"/>
    <dbReference type="eggNOG" id="COG1028">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_010194_1_0_4"/>
    <dbReference type="OMA" id="HYTAAKT"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036291">
        <property type="entry name" value="NAD(P)-bd_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002347">
        <property type="entry name" value="SDR_fam"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00081">
        <property type="entry name" value="GDHRDH"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51735">
        <property type="entry name" value="SSF51735"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ABX33258.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="245" mass="26066" checksum="4522641BDDEE385D" modified="2008-01-15" version="1">MNAPVHDPFTLKGKTILVTGASSGLGRQTAITCAQRGARLIITGRDANRLEETYARLKKGADHVQMSADLTSQADRERLVTIASSVNGLVHCAGQQKHCPIRQLSEQAMTDMYAINFLAPVMLTQRLLQTGALEPNGPIIFLLSTAAHIGTRGVGPYSAMKAGLTGIIRCLALEQAKRKIRVNGISPSAVATPMWGTDQLEAQKTRHPLGLGTPEDVANAAVYLLSDASRWVTGTSLVMDGGAIL</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="75" xmlns="http://uniprot.org/uniprot">
    <accession>A9BQ69</accession>
    <name>A9BQ69_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="9">Flagellar M-ring protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="14" type="ordered locus">Daci_0638</name>
    </gene>
    <organism evidence="14 15">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="14 15" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="15">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="15" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="15">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="9">The M ring may be actively involved in energy transduction.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1 9">Bacterial flagellum basal body</location>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="2">Membrane</location>
            <topology evidence="2">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="3 9">Belongs to the FliF family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX33284.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012202570.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_0638"/>
    <dbReference type="PRIDE" id="A9BQ69"/>
    <dbReference type="EnsemblBacteria" id="ABX33284">
        <property type="protein sequence ID" value="ABX33284"/>
        <property type="gene ID" value="Daci_0638"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_0638"/>
    <dbReference type="eggNOG" id="COG1766">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_028108_1_0_4"/>
    <dbReference type="OMA" id="NYEVNRI"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009431">
        <property type="term" value="C:bacterial-type flagellum basal body, MS ring"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003774">
        <property type="term" value="F:cytoskeletal motor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0071973">
        <property type="term" value="P:bacterial-type flagellum-dependent cell motility"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.300.30">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045851">
        <property type="entry name" value="AMP-bd_C_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013556">
        <property type="entry name" value="Flag_M-ring_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000067">
        <property type="entry name" value="FlgMring_FliF"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006182">
        <property type="entry name" value="FliF_N_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043427">
        <property type="entry name" value="YscJ/FliF"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30046">
        <property type="entry name" value="PTHR30046"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30046:SF0">
        <property type="entry name" value="PTHR30046:SF0"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01514">
        <property type="entry name" value="YscJ_FliF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08345">
        <property type="entry name" value="YscJ_FliF_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF004862">
        <property type="entry name" value="FliF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR01009">
        <property type="entry name" value="FLGMRINGFLIF"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00206">
        <property type="entry name" value="fliF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="8 9" id="KW-0975">Bacterial flagellum</keyword>
    <keyword evidence="4" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="14" id="KW-0966">Cell projection</keyword>
    <keyword evidence="14" id="KW-0969">Cilium</keyword>
    <keyword evidence="14" id="KW-0282">Flagellum</keyword>
    <keyword evidence="7 11" id="KW-0472">Membrane</keyword>
    <keyword evidence="15" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="5 11" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="6 11" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="11">
        <location>
            <begin position="33"/>
            <end position="53"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="11">
        <location>
            <begin position="476"/>
            <end position="494"/>
        </location>
    </feature>
    <feature type="domain" description="YscJ_FliF" evidence="12">
        <location>
            <begin position="54"/>
            <end position="229"/>
        </location>
    </feature>
    <feature type="domain" description="YscJ_FliF_C" evidence="13">
        <location>
            <begin position="261"/>
            <end position="452"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="10">
        <location>
            <begin position="278"/>
            <end position="377"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="10">
        <location>
            <begin position="278"/>
            <end position="360"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="10">
        <location>
            <begin position="361"/>
            <end position="375"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004117"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00007971"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00023143"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="PIRNR" id="PIRNR004862"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="12">
        <source>
            <dbReference type="Pfam" id="PF01514"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="13">
        <source>
            <dbReference type="Pfam" id="PF08345"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="14">
        <source>
            <dbReference type="EMBL" id="ABX33284.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="15">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="566" mass="60169" checksum="3CC3CDC302EBB5B5" modified="2008-01-15" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="71" xmlns="http://uniprot.org/uniprot">
    <accession>A9BQ88</accession>
    <name>A9BQ88_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="5 11">Adenylosuccinate lyase</fullName>
            <shortName evidence="11">ASL</shortName>
            <ecNumber evidence="4 11">4.3.2.2</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="10 11">Adenylosuccinase</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="14" type="ordered locus">Daci_0852</name>
    </gene>
    <organism evidence="14 15">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="14 15" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="15">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="15" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="15">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="9">Catalyzes two reactions in de novo purine nucleotide biosynthesis. Catalyzes the breakdown of 5-aminoimidazole- (N-succinylocarboxamide) ribotide (SAICAR or 2-[5-amino-1-(5-phospho-beta-D-ribosyl)imidazole-4-carboxamido]succinate) to 5-aminoimidazole-4-carboxamide ribotide (AICAR or 5-amino-1-(5-phospho-beta-D-ribosyl)imidazole-4-carboxamide) and fumarate, and of adenylosuccinate (ADS or N(6)-(1,2-dicarboxyethyl)-AMP) to adenosine monophosphate (AMP) and fumarate.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="7">
            <text>(2S)-2-[5-amino-1-(5-phospho-beta-D-ribosyl)imidazole-4-carboxamido]succinate = 5-amino-1-(5-phospho-beta-D-ribosyl)imidazole-4-carboxamide + fumarate</text>
            <dbReference type="Rhea" id="RHEA:23920"/>
            <dbReference type="ChEBI" id="CHEBI:29806"/>
            <dbReference type="ChEBI" id="CHEBI:58443"/>
            <dbReference type="ChEBI" id="CHEBI:58475"/>
            <dbReference type="EC" id="4.3.2.2"/>
        </reaction>
        <physiologicalReaction direction="left-to-right" evidence="7">
            <dbReference type="Rhea" id="RHEA:23921"/>
        </physiologicalReaction>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="8">
            <text>N(6)-(1,2-dicarboxyethyl)-AMP = AMP + fumarate</text>
            <dbReference type="Rhea" id="RHEA:16853"/>
            <dbReference type="ChEBI" id="CHEBI:29806"/>
            <dbReference type="ChEBI" id="CHEBI:57567"/>
            <dbReference type="ChEBI" id="CHEBI:456215"/>
            <dbReference type="EC" id="4.3.2.2"/>
        </reaction>
        <physiologicalReaction direction="left-to-right" evidence="8">
            <dbReference type="Rhea" id="RHEA:16854"/>
        </physiologicalReaction>
    </comment>
    <comment type="pathway">
        <text evidence="2 11">Purine metabolism; AMP biosynthesis via de novo pathway; AMP from IMP: step 2/2.</text>
    </comment>
    <comment type="pathway">
        <text evidence="1 11">Purine metabolism; IMP biosynthesis via de novo pathway; 5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxamide from 5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxylate: step 2/2.</text>
    </comment>
    <comment type="similarity">
        <text evidence="3 11">Belongs to the lyase 1 family. Adenylosuccinate lyase subfamily.</text>
    </comment>
    <dbReference type="EC" id="4.3.2.2" evidence="4 11"/>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX33498.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_0852"/>
    <dbReference type="PRIDE" id="A9BQ88"/>
    <dbReference type="EnsemblBacteria" id="ABX33498">
        <property type="protein sequence ID" value="ABX33498"/>
        <property type="gene ID" value="Daci_0852"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_0852"/>
    <dbReference type="eggNOG" id="COG0015">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_025566_2_0_4"/>
    <dbReference type="OMA" id="TQVNPCD"/>
    <dbReference type="UniPathway" id="UPA00074">
        <property type="reaction ID" value="UER00132"/>
    </dbReference>
    <dbReference type="UniPathway" id="UPA00075">
        <property type="reaction ID" value="UER00336"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0070626">
        <property type="term" value="F:(S)-2-(5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxamido) succinate lyase (fumarate-forming) activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004018">
        <property type="term" value="F:N6-(1,2-dicarboxyethyl)AMP AMP-lyase (fumarate-forming) activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0044208">
        <property type="term" value="P:'de novo' AMP biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniPathway"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006189">
        <property type="term" value="P:'de novo' IMP biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniPathway"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.275.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR024083">
        <property type="entry name" value="Fumarase/histidase_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020557">
        <property type="entry name" value="Fumarate_lyase_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000362">
        <property type="entry name" value="Fumarate_lyase_fam"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR022761">
        <property type="entry name" value="Fumarate_lyase_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008948">
        <property type="entry name" value="L-Aspartase-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004769">
        <property type="entry name" value="Pur_lyase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013539">
        <property type="entry name" value="PurB_C"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08328">
        <property type="entry name" value="ASL_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00206">
        <property type="entry name" value="Lyase_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00149">
        <property type="entry name" value="FUMRATELYASE"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48557">
        <property type="entry name" value="SSF48557"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00928">
        <property type="entry name" value="purB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00163">
        <property type="entry name" value="FUMARATE_LYASES"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="11 14" id="KW-0456">Lyase</keyword>
    <keyword evidence="6 11" id="KW-0658">Purine biosynthesis</keyword>
    <keyword evidence="15" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Lyase_1" evidence="12">
        <location>
            <begin position="36"/>
            <end position="338"/>
        </location>
    </feature>
    <feature type="domain" description="ASL_C" evidence="13">
        <location>
            <begin position="357"/>
            <end position="471"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004706"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00004734"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00008273"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00012339"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00017058"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022755"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00024477"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00024487"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00025012"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00030717"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="RuleBase" id="RU361172"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="12">
        <source>
            <dbReference type="Pfam" id="PF00206"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="13">
        <source>
            <dbReference type="Pfam" id="PF08328"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="14">
        <source>
            <dbReference type="EMBL" id="ABX33498.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="15">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="481" mass="53580" checksum="BA0F7239EA20F585" modified="2008-01-15" version="1">MRCPAISPYSPRFCRAHLQSRPMNLPHISALSPLDGRYAAKLSPLRPIMSEMGYMHRRVQVEVTWFIALSDAGFAEFKPLTEGARVYLQDLVKNFSEADAVAIKDIEKTTNHDVKAVEYWIKGKFDGRPELLKAAEFVHFACTSEDINNTSHALQLRAGRDSVLLPALAGITAKLREMAHAYAAVPMLSRTHGQTASPTTVGKEIANVLVRLEKAAARIAEVKLLAKMNGAVGNYNAHLSAWPEFDWEAFSKKVIESPEPQGLGLSFQPYSIQIEPHDYMAELFDAIARANTILIDFSRDVWGYVSLGYFKQRLKAGEIGSSTMPHKVNPIDFENAEGNLGLANALLKHLAEKLPISRWQRDLTDSTVLRNIGVAMGYATLAYSSLMTGLNKLELNEERLQEDLDHAWEVLAEPIQTVMRRYGVQGAYEKLKEVTRGKTVQAEDLHRLINGLEIPQADKDRLLAMTPASYVGKAAELARRV</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="53" xmlns="http://uniprot.org/uniprot">
    <accession>A9BQL5</accession>
    <name>A9BQL5_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Extracellular solute-binding protein family 3</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ordered locus">Daci_0070</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="5" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX32717.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012202010.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_0070"/>
    <dbReference type="PRIDE" id="A9BQL5"/>
    <dbReference type="EnsemblBacteria" id="ABX32717">
        <property type="protein sequence ID" value="ABX32717"/>
        <property type="gene ID" value="Daci_0070"/>
    </dbReference>
    <dbReference type="GeneID" id="60690474"/>
    <dbReference type="KEGG" id="dac:Daci_0070"/>
    <dbReference type="eggNOG" id="COG0834">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_019602_0_0_4"/>
    <dbReference type="OMA" id="QVEPRGC"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001638">
        <property type="entry name" value="Solute-binding_3/MltF_N"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00497">
        <property type="entry name" value="SBP_bac_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00062">
        <property type="entry name" value="PBPb"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1 2" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="2">
        <location>
            <begin position="1"/>
            <end position="22"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5002733000" evidence="2">
        <location>
            <begin position="23"/>
            <end position="293"/>
        </location>
    </feature>
    <feature type="domain" description="PBPb" evidence="3">
        <location>
            <begin position="33"/>
            <end position="264"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022729"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="SMART" id="SM00062"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="ABX32717.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="293" mass="31896" checksum="BE883C6FF51988BA" modified="2008-01-15" version="1">MQLHTTALCAALALGGLAAAHADTLAKVRDSGRITLAYRESSVPFSYLDNGKPIGMTVEMSQAVAEAVKKAVNRPDLKVQWQAVTSQNRMPLLANGTIDLECGSTTNNTVRGKEVAFAINHFYTGTRLLVKKSSGIKNYADLKDKTVAITTGTTNLQVLRKANADKAWGMNIVMAKDHADGFLLVENDRAAAFGMDDILLFGLIPTAKNPGDFEVVADSLQVEPYACMLRKDDPQFKQLVDGVIGDMMKSGAFARLYDKWFMQPIAPRNVALGLPMSEQLQKNLQDLSDKPAF</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="43" xmlns="http://uniprot.org/uniprot">
    <accession>A9BQW2</accession>
    <name>A9BQW2_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Daci_0271</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="4" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX32917.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012202210.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_0271"/>
    <dbReference type="PRIDE" id="A9BQW2"/>
    <dbReference type="EnsemblBacteria" id="ABX32917">
        <property type="protein sequence ID" value="ABX32917"/>
        <property type="gene ID" value="Daci_0271"/>
    </dbReference>
    <dbReference type="GeneID" id="60690677"/>
    <dbReference type="KEGG" id="dac:Daci_0271"/>
    <dbReference type="eggNOG" id="ENOG5032QEI">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_144870_4_1_4"/>
    <dbReference type="OMA" id="ALCHAGM"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR021762">
        <property type="entry name" value="DUF3325"/>
    </dbReference>
    <dbReference type="Pfam" id="PF11804">
        <property type="entry name" value="DUF3325"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0732">Signal</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="signal peptide" evidence="2">
        <location>
            <begin position="1"/>
            <end position="17"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5002734988" evidence="2">
        <location>
            <begin position="18"/>
            <end position="93"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="64"/>
            <end position="88"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ABX32917.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="93" mass="10209" checksum="15A230BADE8A704E" modified="2008-01-15" version="1">MSMAHLFCQLLALGAFACLALAMDRHQSDLFGKELPPARTRRLRAAGWVLLALSLWAALQVEPWSLGLVAWFGHIAAAAAIVLLSMVARERLR</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2020-12-02" version="50" xmlns="http://uniprot.org/uniprot">
    <accession>A9BQZ9</accession>
    <name>A9BQZ9_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="9">AmiS/UreI transporter</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="9" type="ordered locus">Daci_0308</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="9 10" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="10" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the AmiS/UreI family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX32954.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_0308"/>
    <dbReference type="EnsemblBacteria" id="ABX32954">
        <property type="protein sequence ID" value="ABX32954"/>
        <property type="gene ID" value="Daci_0308"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_0308"/>
    <dbReference type="eggNOG" id="ENOG50300RH">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_096400_1_0_4"/>
    <dbReference type="OMA" id="FTYLWVA"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.25.40.600">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003211">
        <property type="entry name" value="AmiSUreI_transpt"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038523">
        <property type="entry name" value="AmiSUreI_transpt_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02293">
        <property type="entry name" value="AmiS_UreI"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="7 8" id="KW-0472">Membrane</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="5 8" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="6 8" id="KW-1133">Transmembrane helix</keyword>
    <keyword evidence="3" id="KW-0813">Transport</keyword>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="20"/>
            <end position="43"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="50"/>
            <end position="71"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="77"/>
            <end position="95"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="107"/>
            <end position="124"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="136"/>
            <end position="158"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="165"/>
            <end position="186"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00010068"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022448"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="ABX32954.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="192" mass="20746" checksum="F9B333C54EFEBFEF" modified="2008-01-15" version="1">MNTARKALQKQKAKSKRRLAMWLGLSLFYVGAVLCLNGLWMLGRIADREIWVINVFAGLVSLIIGLASAFGPEPDAASVKTGALTLLFAFTYLWVAINRFTGADGRGLGWFSLFVAITAVPVAIDTLLGARTAIDWWMAANWAAWAVLWAMFFVLLALGRNIGRVTGALCIAQGVLTGWLPGYLLLAGQLTG</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="60" xmlns="http://uniprot.org/uniprot">
    <accession>A9BR49</accession>
    <name>A9BR49_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Transcriptional regulator, XRE family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Daci_0461</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="4" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX33107.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012202393.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_0461"/>
    <dbReference type="PRIDE" id="A9BR49"/>
    <dbReference type="EnsemblBacteria" id="ABX33107">
        <property type="protein sequence ID" value="ABX33107"/>
        <property type="gene ID" value="Daci_0461"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_0461"/>
    <dbReference type="eggNOG" id="COG1476">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_066192_29_0_4"/>
    <dbReference type="OMA" id="EIDRSYM"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd00093">
        <property type="entry name" value="HTH_XRE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.260.40">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001387">
        <property type="entry name" value="Cro/C1-type_HTH"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010982">
        <property type="entry name" value="Lambda_DNA-bd_dom_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01381">
        <property type="entry name" value="HTH_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00530">
        <property type="entry name" value="HTH_XRE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47413">
        <property type="entry name" value="SSF47413"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50943">
        <property type="entry name" value="HTH_CROC1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HTH cro/C1-type" evidence="2">
        <location>
            <begin position="29"/>
            <end position="83"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="20"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS50943"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ABX33107.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="97" mass="10301" checksum="5329EF6D4F5F98BD" modified="2008-01-15" version="1">MQKRTVQRGRPAGSTTHDAELAHAFGAAVRALRMERGIAQESLAHQAGIERSHMGKIERGEHMPTLAIIFKIAGALECSTAVLMSEAESQLAAAAPP</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="71" xmlns="http://uniprot.org/uniprot">
    <accession>A9BRK7</accession>
    <name>A9BRK7_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="7 10 11">Ribulose-phosphate 3-epimerase</fullName>
            <ecNumber evidence="7 10 11">5.1.3.1</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="10" type="primary">rpe</name>
        <name evidence="15" type="ordered locus">Daci_0722</name>
    </gene>
    <organism evidence="15 16">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="15 16" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="16">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="16" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="16">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="10">Catalyzes the reversible epimerization of D-ribulose 5-phosphate to D-xylulose 5-phosphate.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1 10 11">
            <text>D-ribulose 5-phosphate = D-xylulose 5-phosphate</text>
            <dbReference type="Rhea" id="RHEA:13677"/>
            <dbReference type="ChEBI" id="CHEBI:57737"/>
            <dbReference type="ChEBI" id="CHEBI:58121"/>
            <dbReference type="EC" id="5.1.3.1"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="3">
            <name>Co(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:48828"/>
        </cofactor>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="5">
            <name>Fe(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29033"/>
        </cofactor>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="2">
            <name>Mn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29035"/>
        </cofactor>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="4">
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </cofactor>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="10 13">
            <name>a divalent metal cation</name>
            <dbReference type="ChEBI" id="CHEBI:60240"/>
        </cofactor>
        <text evidence="10 13">Binds 1 divalent metal cation per subunit.</text>
    </comment>
    <comment type="pathway">
        <text evidence="10">Carbohydrate degradation.</text>
    </comment>
    <comment type="similarity">
        <text evidence="6 10 11">Belongs to the ribulose-phosphate 3-epimerase family.</text>
    </comment>
    <dbReference type="EC" id="5.1.3.1" evidence="7 10 11"/>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX33368.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012202654.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_0722"/>
    <dbReference type="PRIDE" id="A9BRK7"/>
    <dbReference type="EnsemblBacteria" id="ABX33368">
        <property type="protein sequence ID" value="ABX33368"/>
        <property type="gene ID" value="Daci_0722"/>
    </dbReference>
    <dbReference type="GeneID" id="60685277"/>
    <dbReference type="KEGG" id="dac:Daci_0722"/>
    <dbReference type="eggNOG" id="COG0036">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_054856_2_1_4"/>
    <dbReference type="OMA" id="WLQVDGG"/>
    <dbReference type="UniPathway" id="UPA00219"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004750">
        <property type="term" value="F:D-ribulose-phosphate 3-epimerase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0019323">
        <property type="term" value="P:pentose catabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006098">
        <property type="term" value="P:pentose-phosphate shunt"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd00429">
        <property type="entry name" value="RPE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.20.20.70">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_02227">
        <property type="entry name" value="RPE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013785">
        <property type="entry name" value="Aldolase_TIM"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR026019">
        <property type="entry name" value="Ribul_P_3_epim"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000056">
        <property type="entry name" value="Ribul_P_3_epim-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011060">
        <property type="entry name" value="RibuloseP-bd_barrel"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11749">
        <property type="entry name" value="PTHR11749"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00834">
        <property type="entry name" value="Ribul_P_3_epim"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF001461">
        <property type="entry name" value="RPE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51366">
        <property type="entry name" value="SSF51366"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01163">
        <property type="entry name" value="rpe"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01085">
        <property type="entry name" value="RIBUL_P_3_EPIMER_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01086">
        <property type="entry name" value="RIBUL_P_3_EPIMER_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="10 11" id="KW-0119">Carbohydrate metabolism</keyword>
    <keyword evidence="13" id="KW-0170">Cobalt</keyword>
    <keyword evidence="9 10 11" id="KW-0413">Isomerase</keyword>
    <keyword evidence="13" id="KW-0464">Manganese</keyword>
    <keyword evidence="8 10 13" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="16" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="13" id="KW-0862">Zinc</keyword>
    <feature type="region of interest" description="Substrate binding" evidence="10 14">
        <location>
            <begin position="150"/>
            <end position="153"/>
        </location>
    </feature>
    <feature type="region of interest" description="Substrate binding" evidence="10">
        <location>
            <begin position="183"/>
            <end position="185"/>
        </location>
    </feature>
    <feature type="region of interest" description="Substrate binding" evidence="10 14">
        <location>
            <begin position="205"/>
            <end position="206"/>
        </location>
    </feature>
    <feature type="active site" description="Proton acceptor" evidence="10 12">
        <location>
            <position position="37"/>
        </location>
    </feature>
    <feature type="active site" description="Proton donor" evidence="10 12">
        <location>
            <position position="183"/>
        </location>
    </feature>
    <feature type="binding site" evidence="10 14">
        <location>
            <position position="10"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="10 13">
        <location>
            <position position="35"/>
        </location>
        <ligand>
            <name>a divalent metal cation</name>
            <dbReference type="ChEBI" id="CHEBI:60240"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="10 13">
        <location>
            <position position="37"/>
        </location>
        <ligand>
            <name>a divalent metal cation</name>
            <dbReference type="ChEBI" id="CHEBI:60240"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="10 13 14">
        <location>
            <position position="74"/>
        </location>
    </feature>
    <feature type="binding site" evidence="10 13">
        <location>
            <position position="183"/>
        </location>
        <ligand>
            <name>a divalent metal cation</name>
            <dbReference type="ChEBI" id="CHEBI:60240"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="14">
        <location>
            <position position="185"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001782"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00001936"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00001941"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00001947"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00001954"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00009541"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00013188"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00023235"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_02227"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="PIRNR" id="PIRNR001461"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="12">
        <source>
            <dbReference type="PIRSR" id="PIRSR001461-1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="13">
        <source>
            <dbReference type="PIRSR" id="PIRSR001461-2"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="14">
        <source>
            <dbReference type="PIRSR" id="PIRSR001461-3"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="15">
        <source>
            <dbReference type="EMBL" id="ABX33368.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="16">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="227" mass="24398" checksum="2E918DF6EA10A90A" modified="2008-01-15" version="1">MSPTYRIAPSILSADFARLGDEVKNVIASGADWIHFDVMDNHYVPNLTFGPMICEALKPHAKTPDGQPVPIDVHLMVSPVDELATAFAKAGADYISFHPDATAHVHRSIQNIRAQGAKPGLVFNPAAPLDVLDWVIDDIDLILLMSVNPGFGGQSFIDSTLRKIEAARKRIEASGRDIRLEVDGGIKETNIRRVADAGADTFVAGSAIFGKPDYKAVIDAMRGALAA</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="59" xmlns="http://uniprot.org/uniprot">
    <accession>A9BRR1</accession>
    <name>A9BRR1_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ordered locus">Daci_0982</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="5" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Periplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the UPF0065 (bug) family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX33628.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012202914.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_0982"/>
    <dbReference type="PRIDE" id="A9BRR1"/>
    <dbReference type="EnsemblBacteria" id="ABX33628">
        <property type="protein sequence ID" value="ABX33628"/>
        <property type="gene ID" value="Daci_0982"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_0982"/>
    <dbReference type="eggNOG" id="COG3181">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_045683_1_1_4"/>
    <dbReference type="OMA" id="ETMAKQN"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0042597">
        <property type="term" value="C:periplasmic space"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.190.150">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005064">
        <property type="entry name" value="BUG"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR042100">
        <property type="entry name" value="Bug_dom1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006311">
        <property type="entry name" value="TAT_signal"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR42928">
        <property type="entry name" value="PTHR42928"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03401">
        <property type="entry name" value="TctC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF017082">
        <property type="entry name" value="YflP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51318">
        <property type="entry name" value="TAT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="3">
        <location>
            <begin position="1"/>
            <end position="17"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5002735021" evidence="3">
        <location>
            <begin position="18"/>
            <end position="326"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004418"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00006987"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="ABX33628.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="326" mass="34430" checksum="AAA7917B8AD21B91" modified="2008-01-15" version="1">MTLASRRQFIHSLTALAATPVLPAIAQAPAGAWPQRPIELIVPFAAGGGTDVLARALAEVARKHLPQDLIVLNRAGASGAVGWTELANARPDGYKIGIITVELTMIPHMGLTKISSDAVLPVARLNADPATIAVRADSPYRSIEELIAAARKDEAAVRIGNAGPGSLGHLAAAALQDKAGVKFNHAPYRGANPAVLDLLGGHIEAVAVTPVEVATYVAAGKIRPLAIMAEQRIQAGWEAVPTLKERGIDLLIGGWRGLAVPRNTPDAVVQTLRKAMALTLKDPVLRETMAKQNMGEGYLDQPEFKAVIDRDNAVFKQLVDKLGIKA</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="83" xmlns="http://uniprot.org/uniprot">
    <accession>A9BRR8</accession>
    <name>A9BRR8_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="3 5">N5-carboxyaminoimidazole ribonucleotide synthase</fullName>
            <shortName evidence="3 5">N5-CAIR synthase</shortName>
            <ecNumber evidence="3 5">6.3.4.18</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="3 5">5-(carboxyamino)imidazole ribonucleotide synthetase</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="3 5" type="primary">purK</name>
        <name evidence="7" type="ordered locus">Daci_0989</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="8" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="3">Catalyzes the ATP-dependent conversion of 5-aminoimidazole ribonucleotide (AIR) and HCO(3)(-) to N5-carboxyaminoimidazole ribonucleotide (N5-CAIR).</text>
    </comment>
    <comment type="function">
        <text evidence="5">Catalyzes the ATP-dependent conversion of 5-aminoimidazole ribonucleotide (AIR) and HCO(3)- to N5-carboxyaminoimidazole ribonucleotide (N5-CAIR).</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="3 5">
            <text>5-amino-1-(5-phospho-beta-D-ribosyl)imidazole + ATP + hydrogencarbonate = 5-carboxyamino-1-(5-phospho-D-ribosyl)imidazole + ADP + 2 H(+) + phosphate</text>
            <dbReference type="Rhea" id="RHEA:19317"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:17544"/>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
            <dbReference type="ChEBI" id="CHEBI:43474"/>
            <dbReference type="ChEBI" id="CHEBI:58730"/>
            <dbReference type="ChEBI" id="CHEBI:137981"/>
            <dbReference type="ChEBI" id="CHEBI:456216"/>
            <dbReference type="EC" id="6.3.4.18"/>
        </reaction>
    </comment>
    <comment type="pathway">
        <text evidence="3 5">Purine metabolism; IMP biosynthesis via de novo pathway; 5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxylate from 5-amino-1-(5-phospho-D-ribosyl)imidazole (N5-CAIR route): step 1/2.</text>
    </comment>
    <comment type="subunit">
        <text evidence="3 5">Homodimer.</text>
    </comment>
    <comment type="similarity">
        <text evidence="3 5">Belongs to the PurK/PurT family.</text>
    </comment>
    <dbReference type="EC" id="6.3.4.18" evidence="3 5"/>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX33635.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012202921.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_0989"/>
    <dbReference type="PRIDE" id="A9BRR8"/>
    <dbReference type="EnsemblBacteria" id="ABX33635">
        <property type="protein sequence ID" value="ABX33635"/>
        <property type="gene ID" value="Daci_0989"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_0989"/>
    <dbReference type="eggNOG" id="COG0026">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_011534_0_1_4"/>
    <dbReference type="OMA" id="ITFDHEH"/>
    <dbReference type="UniPathway" id="UPA00074">
        <property type="reaction ID" value="UER00942"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0034028">
        <property type="term" value="F:5-(carboxyamino)imidazole ribonucleotide synthase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004638">
        <property type="term" value="F:phosphoribosylaminoimidazole carboxylase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006189">
        <property type="term" value="P:'de novo' IMP biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.1490.20">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01928">
        <property type="entry name" value="PurK"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011761">
        <property type="entry name" value="ATP-grasp"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003135">
        <property type="entry name" value="ATP-grasp_carboxylate-amine"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013815">
        <property type="entry name" value="ATP_grasp_subdomain_1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016185">
        <property type="entry name" value="PreATP-grasp_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005875">
        <property type="entry name" value="PurK"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR040686">
        <property type="entry name" value="PurK_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011054">
        <property type="entry name" value="Rudment_hybrid_motif"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02222">
        <property type="entry name" value="ATP-grasp"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF17769">
        <property type="entry name" value="PurK_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51246">
        <property type="entry name" value="SSF51246"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52440">
        <property type="entry name" value="SSF52440"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01161">
        <property type="entry name" value="purK"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50975">
        <property type="entry name" value="ATP_GRASP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2 3 4" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="3 5" id="KW-0436">Ligase</keyword>
    <keyword evidence="7" id="KW-0456">Lyase</keyword>
    <keyword evidence="3 4 5" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="1 3 5" id="KW-0658">Purine biosynthesis</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="ATP-grasp" evidence="6">
        <location>
            <begin position="112"/>
            <end position="298"/>
        </location>
    </feature>
    <feature type="binding site" evidence="3">
        <location>
            <position position="108"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="3">
        <location>
            <position position="147"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="3">
        <location>
            <begin position="152"/>
            <end position="158"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="3">
        <location>
            <begin position="182"/>
            <end position="185"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="3">
        <location>
            <position position="190"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="3">
        <location>
            <position position="213"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="3">
        <location>
            <begin position="268"/>
            <end position="269"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022755"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01928"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00409"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="RuleBase" id="RU361200"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="PROSITE" id="PS50975"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="ABX33635.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="387" mass="41167" checksum="FA0777A7EF3DF573" modified="2008-01-15" version="1">MSADVILPGATLGVLGGGQLGRMFVQSAQAMGYFTAVLDADPTSPAGLVSHHHIRTGYEDPQGLAELARLSAAVTTEFENVPAAALNLLAAQRPVSPAGSSVAIAQDRAQEKAHFVRCGVPCAPYAVIETPAQLAAVHASLLPGILKTARMGYDGKGQVRVKNAAELATAWEQLGRVACVLEKMLPLAHECSVIVARGRDGSMVNLPVQRNLHREGILSVTEVYEGNLPQAQVEQALAAARSVADGLDYVGVLCVEFFVLQDGMLVVNEIAPRPHNSGHYSQNACDVSQFELQVRCMTGLPLTQPRQHSPSIMLNLLGDLWFKDGEQAKAPAWDQVLALPGCHLHLYGKHDAKRGRKMGHLNVTGPSPEAVRSTALQAAAILGLEPF</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="84" xmlns="http://uniprot.org/uniprot">
    <accession>A9BRZ5</accession>
    <name>A9BRZ5_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="13">ABC transporter related</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="13" type="ordered locus">Daci_0759</name>
    </gene>
    <organism evidence="13 14">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="13 14" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="14">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="14" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="14">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX33405.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012202691.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_0759"/>
    <dbReference type="PRIDE" id="A9BRZ5"/>
    <dbReference type="EnsemblBacteria" id="ABX33405">
        <property type="protein sequence ID" value="ABX33405"/>
        <property type="gene ID" value="Daci_0759"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_0759"/>
    <dbReference type="eggNOG" id="COG0842">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="eggNOG" id="COG1129">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_000604_16_3_4"/>
    <dbReference type="OMA" id="FTENFTD"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043190">
        <property type="term" value="C:ATP-binding cassette (ABC) transporter complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0055085">
        <property type="term" value="P:transmembrane transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003593">
        <property type="entry name" value="AAA+_ATPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000412">
        <property type="entry name" value="ABC_2_transport"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003439">
        <property type="entry name" value="ABC_transporter-like_ATP-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017871">
        <property type="entry name" value="ABC_transporter-like_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00005">
        <property type="entry name" value="ABC_tran"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SMART" id="SM00382">
        <property type="entry name" value="AAA"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51012">
        <property type="entry name" value="ABC_TM2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00211">
        <property type="entry name" value="ABC_TRANSPORTER_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50893">
        <property type="entry name" value="ABC_TRANSPORTER_2"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="5 9" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="10" id="KW-0997">Cell inner membrane</keyword>
    <keyword evidence="2" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="8 10 11" id="KW-0472">Membrane</keyword>
    <keyword evidence="4 9" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="14" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="6" id="KW-1278">Translocase</keyword>
    <keyword evidence="3 10 11" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="7 11" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="11">
        <location>
            <begin position="723"/>
            <end position="746"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="11">
        <location>
            <begin position="773"/>
            <end position="796"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="11">
        <location>
            <begin position="802"/>
            <end position="822"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="11">
        <location>
            <begin position="834"/>
            <end position="852"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="11">
        <location>
            <begin position="891"/>
            <end position="912"/>
        </location>
    </feature>
    <feature type="domain" description="ABC transporter" evidence="12">
        <location>
            <begin position="14"/>
            <end position="249"/>
        </location>
    </feature>
    <feature type="domain" description="ABC transporter" evidence="12">
        <location>
            <begin position="279"/>
            <end position="509"/>
        </location>
    </feature>
    <feature type="binding site" evidence="9">
        <location>
            <begin position="46"/>
            <end position="53"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="9">
        <location>
            <begin position="311"/>
            <end position="318"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022967"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00434"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00442"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="12">
        <source>
            <dbReference type="PROSITE" id="PS50893"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="13">
        <source>
            <dbReference type="EMBL" id="ABX33405.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="14">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="918" mass="100473" checksum="024EE35756C887E2" modified="2008-01-15" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="77" xmlns="http://uniprot.org/uniprot">
    <accession>A9BSB2</accession>
    <name>A9BSB2_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">Formyltetrahydrofolate deformylase</fullName>
            <ecNumber evidence="3">3.5.1.10</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="3">Formyl-FH(4) hydrolase</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="3" type="primary">purU</name>
        <name evidence="5" type="ordered locus">Daci_1081</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="6" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="3">Catalyzes the hydrolysis of 10-formyltetrahydrofolate (formyl-FH4) to formate and tetrahydrofolate (FH4).</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="3">
            <text>(6S)-10-formyltetrahydrofolate + H2O = (6S)-5,6,7,8-tetrahydrofolate + formate + H(+)</text>
            <dbReference type="Rhea" id="RHEA:19833"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:15740"/>
            <dbReference type="ChEBI" id="CHEBI:57453"/>
            <dbReference type="ChEBI" id="CHEBI:57454"/>
            <dbReference type="EC" id="3.5.1.10"/>
        </reaction>
    </comment>
    <comment type="pathway">
        <text evidence="3">Purine metabolism; IMP biosynthesis via de novo pathway; formate from 10-formyl-5,6,7,8-tetrahydrofolate: step 1/1.</text>
    </comment>
    <comment type="similarity">
        <text evidence="3">Belongs to the PurU family.</text>
    </comment>
    <dbReference type="EC" id="3.5.1.10" evidence="3"/>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX33726.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_1081"/>
    <dbReference type="PRIDE" id="A9BSB2"/>
    <dbReference type="EnsemblBacteria" id="ABX33726">
        <property type="protein sequence ID" value="ABX33726"/>
        <property type="gene ID" value="Daci_1081"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_1081"/>
    <dbReference type="eggNOG" id="COG0788">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_038395_3_0_4"/>
    <dbReference type="OMA" id="ISNHRDF"/>
    <dbReference type="UniPathway" id="UPA00074">
        <property type="reaction ID" value="UER00170"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008864">
        <property type="term" value="F:formyltetrahydrofolate deformylase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016742">
        <property type="term" value="F:hydroxymethyl-, formyl- and related transferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006189">
        <property type="term" value="P:'de novo' IMP biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006730">
        <property type="term" value="P:one-carbon metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd04875">
        <property type="entry name" value="ACT_F4HF-DF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="CDD" id="cd08648">
        <property type="entry name" value="FMT_core_Formyl-FH4-Hydrolase_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01927">
        <property type="entry name" value="PurU"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045865">
        <property type="entry name" value="ACT-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002912">
        <property type="entry name" value="ACT_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041729">
        <property type="entry name" value="Formyl-FH4-Hydrolase_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002376">
        <property type="entry name" value="Formyl_transf_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036477">
        <property type="entry name" value="Formyl_transf_N_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004810">
        <property type="entry name" value="PurU"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR044074">
        <property type="entry name" value="PurU_ACT"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR42706">
        <property type="entry name" value="PTHR42706"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00551">
        <property type="entry name" value="Formyl_trans_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR01575">
        <property type="entry name" value="FFH4HYDRLASE"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53328">
        <property type="entry name" value="SSF53328"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55021">
        <property type="entry name" value="SSF55021"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00655">
        <property type="entry name" value="PurU"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51671">
        <property type="entry name" value="ACT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2 3" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="1 3" id="KW-0554">One-carbon metabolism</keyword>
    <keyword evidence="3" id="KW-0658">Purine biosynthesis</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="ACT" evidence="4">
        <location>
            <begin position="31"/>
            <end position="105"/>
        </location>
    </feature>
    <feature type="active site" evidence="3">
        <location>
            <position position="251"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022563"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01927"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="PROSITE" id="PS51671"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="ABX33726.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="307" mass="34098" checksum="E824277E881B1ED6" modified="2008-01-15" version="1">MWFLRTFPERVTCAGSCPCCDNCAAMTQAYILTLSCPDRLGLVHAVSGFLLEQGGNIEEAAQYNDPATGLFFMRVQFACNGCDPAALRAALADLGGQYQMKWRLHTKAEAMKTVLMVSKEGHCLNDLLFRWKSGLLPVDIRAIISNHREFYQLAASYNIPFHHIPVTAATKAQAEAKQFEIIEAEGAELVVLARYMQVLSNDLCTKLAGRAINIHHSFLPSFKGAKPYYQAHDRGVKLIGATAHYVTADLDEGPIIEQDVARADHTDTVEDLTARGRDTESQVLARAVKWHSEHRVILNGHKTVVFR</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="67" xmlns="http://uniprot.org/uniprot">
    <accession>A9BSD9</accession>
    <name>A9BSD9_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="7">Nitrite transporter</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ordered locus">Daci_1108</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="8" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the major facilitator superfamily. Nitrate/nitrite porter (TC 2.A.1.8) family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX33753.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012203039.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_1108"/>
    <dbReference type="PRIDE" id="A9BSD9"/>
    <dbReference type="EnsemblBacteria" id="ABX33753">
        <property type="protein sequence ID" value="ABX33753"/>
        <property type="gene ID" value="Daci_1108"/>
    </dbReference>
    <dbReference type="GeneID" id="60685677"/>
    <dbReference type="KEGG" id="dac:Daci_1108"/>
    <dbReference type="eggNOG" id="COG2223">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_033198_1_0_4"/>
    <dbReference type="OMA" id="WWYYARR"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015112">
        <property type="term" value="F:nitrate transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd17341">
        <property type="entry name" value="MFS_NRT2_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.1250.20">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011701">
        <property type="entry name" value="MFS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036259">
        <property type="entry name" value="MFS_trans_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR044772">
        <property type="entry name" value="NO3_transporter"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR23515">
        <property type="entry name" value="PTHR23515"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07690">
        <property type="entry name" value="MFS_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF103473">
        <property type="entry name" value="SSF103473"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5 6" id="KW-0472">Membrane</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 6" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="4 6" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="42"/>
            <end position="61"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="81"/>
            <end position="98"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="110"/>
            <end position="129"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="141"/>
            <end position="164"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="184"/>
            <end position="205"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="225"/>
            <end position="243"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="264"/>
            <end position="290"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="296"/>
            <end position="317"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="329"/>
            <end position="348"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="368"/>
            <end position="398"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="424"/>
            <end position="445"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="457"/>
            <end position="477"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00008432"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="ABX33753.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="486" mass="51779" checksum="80CEA0B8325B7B8A" modified="2008-01-15" version="1">MHANTKTAAKASARSRPGSVLTLWRPEDRQFWEREGEAIARINLWISVPALFLAFAIWQVWSVVAVNLPALGFTYSTNQLFWLAAAPALSGATLRIFYSFMVPLMGGRRWTALSTASLLIPAIGIGYAVQDASTGYPTMLILALLCGLGGGNFSSSMANISFFFPKERKGSALGVNAGLGNLGVSVVQFLSPLVITAGIFGVFGGDAQTITKAGETTRVWAQNAAFIWVPWIAIASLAAWFGMNDIADAKASFAAQAAIFRRKHNWVMCLLYLGTFGSFIGFAAGFPLLIKSQFPAVNPLAYAWLGPLLGALSRPFGGWLADKAGGARVTFWNFLVMAVAVVGVLYFLPKGSGGYALGFGPAEGSFMGFFLMFLVLFLTTGIGNGSTFSMIPAIFLALKQRELGAHPSEQAQAHALKEGNTEGAAALGFAGALGAYGGFFIPKSYGSSIAATGGPELALWVFAAFYVLCVGVTWWYYARRNAEMPC</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="80" xmlns="http://uniprot.org/uniprot">
    <accession>A9BSM7</accession>
    <name>A9BSM7_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="12">Protease HtpX homolog</fullName>
            <ecNumber evidence="12">3.4.24.-</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="12" type="primary">htpX</name>
        <name evidence="14" type="ordered locus">Daci_1388</name>
    </gene>
    <organism evidence="14 15">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="14 15" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="15">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="15" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="15">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="12">
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </cofactor>
        <text evidence="12">Binds 1 zinc ion per subunit.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="12">Cell inner membrane</location>
            <topology evidence="12">Multi-pass membrane protein</topology>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2 12">Belongs to the peptidase M48B family.</text>
    </comment>
    <dbReference type="EC" id="3.4.24.-" evidence="12"/>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX34032.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_1388"/>
    <dbReference type="MEROPS" id="M48.002"/>
    <dbReference type="PRIDE" id="A9BSM7"/>
    <dbReference type="EnsemblBacteria" id="ABX34032">
        <property type="protein sequence ID" value="ABX34032"/>
        <property type="gene ID" value="Daci_1388"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_1388"/>
    <dbReference type="eggNOG" id="COG0501">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_042266_1_0_4"/>
    <dbReference type="OMA" id="AVCCTEG"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004222">
        <property type="term" value="F:metalloendopeptidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008270">
        <property type="term" value="F:zinc ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006508">
        <property type="term" value="P:proteolysis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00188">
        <property type="entry name" value="Pept_M48_protease_HtpX"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR022919">
        <property type="entry name" value="Pept_M48_protease_HtpX"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001915">
        <property type="entry name" value="Peptidase_M48"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01435">
        <property type="entry name" value="Peptidase_M48"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="12" id="KW-0997">Cell inner membrane</keyword>
    <keyword evidence="3 12" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="7 12" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="11 12" id="KW-0472">Membrane</keyword>
    <keyword evidence="6 12" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="10 12" id="KW-0482">Metalloprotease</keyword>
    <keyword evidence="4 12" id="KW-0645">Protease</keyword>
    <keyword evidence="15" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="5 12" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="9 12" id="KW-1133">Transmembrane helix</keyword>
    <keyword evidence="8 12" id="KW-0862">Zinc</keyword>
    <feature type="transmembrane region" description="Helical" evidence="12">
        <location>
            <begin position="33"/>
            <end position="55"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="12">
        <location>
            <begin position="67"/>
            <end position="88"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="12">
        <location>
            <begin position="183"/>
            <end position="204"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="12">
        <location>
            <begin position="224"/>
            <end position="248"/>
        </location>
    </feature>
    <feature type="domain" description="Peptidase_M48" evidence="13">
        <location>
            <begin position="108"/>
            <end position="317"/>
        </location>
    </feature>
    <feature type="active site" evidence="12">
        <location>
            <position position="174"/>
        </location>
    </feature>
    <feature type="binding site" evidence="12">
        <location>
            <position position="173"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
            <note>catalytic</note>
        </ligand>
    </feature>
    <feature type="binding site" evidence="12">
        <location>
            <position position="177"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
            <note>catalytic</note>
        </ligand>
    </feature>
    <feature type="binding site" evidence="12">
        <location>
            <position position="253"/>
        </location>
        <ligand>
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
            <note>catalytic</note>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00009779"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022670"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00022833"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00023049"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="12">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00188"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="13">
        <source>
            <dbReference type="Pfam" id="PF01435"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="14">
        <source>
            <dbReference type="EMBL" id="ABX34032.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="15">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="321" mass="34089" checksum="671F9948875E0D40" modified="2008-01-15" version="1">MKTAGGALTCQRCRAQILPPFPHFVENPLMKRIALFLLTNVAVVVVLGIVASLLGVNRFLTSNGLNLGALLGFAFIMGFGGAIISLLISKPLAKWSSGVHVINEPRNADEAWIVNTVRGFADRAGIGMPEVGIYEGEPNAFATGAFKNSALVAVSTGLLEGMTREEVEAVIGHEVAHIANGDMVTMTLIQGVMNTFVVFLSRVIGYAVDSFLRKNDESSSGPGIGYYVTTIVLDIVLGFLAAIIVAWFSRQREFRADAGAAQLMGRKQPMMNALARLGGMHPGELPKSVAAMGIAGGIGKLFSTHPPIEERIAALQNAQNL</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="55" xmlns="http://uniprot.org/uniprot">
    <accession>A9BSP9</accession>
    <name>A9BSP9_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Transposase IS3/IS911 family protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Daci_1410</name>
        <name evidence="2" type="ordered locus">Daci_3090</name>
    </gene>
    <organism evidence="1 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
            <strain evidence="1">SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="1" key="3">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX34054.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX35728.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012203340.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_1410"/>
    <dbReference type="PRIDE" id="A9BSP9"/>
    <dbReference type="EnsemblBacteria" id="ABX34054">
        <property type="protein sequence ID" value="ABX34054"/>
        <property type="gene ID" value="Daci_1410"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="ABX35728">
        <property type="protein sequence ID" value="ABX35728"/>
        <property type="gene ID" value="Daci_3090"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_1410"/>
    <dbReference type="KEGG" id="dac:Daci_3090"/>
    <dbReference type="eggNOG" id="COG2963">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_111920_1_0_4"/>
    <dbReference type="OMA" id="RTWIAKS"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004803">
        <property type="term" value="F:transposase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006313">
        <property type="term" value="P:transposition, DNA-mediated"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009057">
        <property type="entry name" value="Homeobox-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002514">
        <property type="entry name" value="Transposase_8"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01527">
        <property type="entry name" value="HTH_Tnp_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46689">
        <property type="entry name" value="SSF46689"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ABX34054.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX35728.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="147" mass="15768" checksum="E6C2D9D34350D3C9" modified="2008-01-15" version="1">MSEIDAEVVRRLVTGRKNDGRAVYDPQAKAEVVRACLKPGVSVARMALQCGINANLLRRWITQSMGADMKASRASMPTVAMASTSAFVPLRLAAPEVSSVTAAQIKARLHARLPNGVEIDLSETGPGEWLPVIELLGRLPCSDSTTR</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="54" xmlns="http://uniprot.org/uniprot">
    <accession>A9BSX4</accession>
    <name>A9BSX4_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Fatty acid desaturase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Daci_1691</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="4" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX34334.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012203619.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_1691"/>
    <dbReference type="PRIDE" id="A9BSX4"/>
    <dbReference type="EnsemblBacteria" id="ABX34334">
        <property type="protein sequence ID" value="ABX34334"/>
        <property type="gene ID" value="Daci_1691"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_1691"/>
    <dbReference type="eggNOG" id="COG3239">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_072360_0_0_4"/>
    <dbReference type="OMA" id="HVANHHR"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006629">
        <property type="term" value="P:lipid metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005804">
        <property type="entry name" value="FA_desaturase_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00487">
        <property type="entry name" value="FA_desaturase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="21"/>
            <end position="39"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="45"/>
            <end position="61"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="126"/>
            <end position="145"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="157"/>
            <end position="178"/>
        </location>
    </feature>
    <feature type="domain" description="FA_desaturase" evidence="2">
        <location>
            <begin position="45"/>
            <end position="270"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF00487"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ABX34334.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="311" mass="36788" checksum="C8D642AB7F6CB383" modified="2008-01-15" version="1">MSRPPAHHVQPRLPRLRHWRDLQSLAYLVALPLIVWWQWQHGWNLWLYGIELFLTLGVGVIHHNHTHLRMWRGRWANRITDYWLTLLQGHPTFVFWPAHVANHHRFRHGPRDMARTYRFGGDHNHLLGYLLHPLQAGWVLYPLFLRWLGQLRRHWPGAFRYCMGQYLLWLGSWALLLSLDWQKALLLVIVPQLHGLHWLLATNYLQHAHADGRPLTRGQRLDSATPLNYARNFEGWVNPLLFNIGLHTAHHERPQAHWSELTRLHSEHYRQRVAPALNEGGLLPYMARVFVLGTVWPPARTRAQMPPGTYD</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="78" xmlns="http://uniprot.org/uniprot">
    <accession>A9BTK7</accession>
    <name>A9BTK7_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Transcriptional regulator, TetR family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ordered locus">Daci_2337</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="5" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX34975.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012204257.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_2337"/>
    <dbReference type="PRIDE" id="A9BTK7"/>
    <dbReference type="EnsemblBacteria" id="ABX34975">
        <property type="protein sequence ID" value="ABX34975"/>
        <property type="gene ID" value="Daci_2337"/>
    </dbReference>
    <dbReference type="GeneID" id="60686712"/>
    <dbReference type="KEGG" id="dac:Daci_2337"/>
    <dbReference type="eggNOG" id="COG1309">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_069356_12_9_4"/>
    <dbReference type="OMA" id="YLGGMVF"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023772">
        <property type="entry name" value="DNA-bd_HTH_TetR-type_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009057">
        <property type="entry name" value="Homeobox-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001647">
        <property type="entry name" value="HTH_TetR"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036271">
        <property type="entry name" value="Tet_transcr_reg_TetR-rel_C_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00440">
        <property type="entry name" value="TetR_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00455">
        <property type="entry name" value="HTHTETR"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46689">
        <property type="entry name" value="SSF46689"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48498">
        <property type="entry name" value="SSF48498"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01081">
        <property type="entry name" value="HTH_TETR_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50977">
        <property type="entry name" value="HTH_TETR_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0678">Repressor</keyword>
    <feature type="domain" description="HTH tetR-type" evidence="3">
        <location>
            <begin position="13"/>
            <end position="73"/>
        </location>
    </feature>
    <feature type="DNA-binding region" description="H-T-H motif" evidence="2">
        <location>
            <begin position="36"/>
            <end position="55"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022491"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00335"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="PROSITE" id="PS50977"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="ABX34975.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="199" mass="22633" checksum="42CA78DE6DB5E3FB" modified="2008-01-15" version="1">MQDEAWTFFPHAGSRHVQTLRVALRLFVERGFFNTSIQDLCAEAGVSIGFFYNHFADKEGIARELYRHLLARMNVLLDDIEERHAGSAQRCREVLRMLFGLAEAEPEAMGFVVNARHREFLPDEQAICSASAFVRMRGFVFAGMTDGEIRQMEPMVAASLMYGSAIRMICLRLDGIIDTPIEPLFDALWDGVWRSLKPD</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="83" xmlns="http://uniprot.org/uniprot">
    <accession>A9BTL9</accession>
    <name>A9BTL9_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Transcriptional regulator, LysR family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Daci_2349</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="4" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the LysR transcriptional regulatory family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX34987.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012204269.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_2349"/>
    <dbReference type="PRIDE" id="A9BTL9"/>
    <dbReference type="EnsemblBacteria" id="ABX34987">
        <property type="protein sequence ID" value="ABX34987"/>
        <property type="gene ID" value="Daci_2349"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_2349"/>
    <dbReference type="eggNOG" id="COG0583">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_039613_6_0_4"/>
    <dbReference type="OMA" id="WASLRVK"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003700">
        <property type="term" value="F:DNA-binding transcription factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005119">
        <property type="entry name" value="LysR_subst-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000847">
        <property type="entry name" value="Tscrpt_reg_HTH_LysR"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036390">
        <property type="entry name" value="WH_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00126">
        <property type="entry name" value="HTH_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03466">
        <property type="entry name" value="LysR_substrate"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00039">
        <property type="entry name" value="HTHLYSR"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46785">
        <property type="entry name" value="SSF46785"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50931">
        <property type="entry name" value="HTH_LYSR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HTH lysR-type" evidence="2">
        <location>
            <begin position="12"/>
            <end position="69"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00009437"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS50931"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ABX34987.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="323" mass="35172" checksum="50F5EE8FA709C67F" modified="2008-01-15" version="1">MSKIDRVLRSNLKLRHLQLLVALDQFRHLGRAAEFLAVTQPAVSKTLAEIERMLDMTLFERSTRGTEPTAAGVSMVRFARSVLAGFERTRDEMAAEASGTRGRTSVGAMVVATPVLLARAVEQLKARSAQTTVLVEEGDLTRLLPKLRMGELDLFVGRLEPGYASPDLETEALYDEPMVAVVRPGHALLAQPASWQALADMPCVMPPPWASLRVKLEQQFFAHGLHPPADLVESASFLSQISFLHQRGAVAFMARGVAEHFAQQGLVAVLDLPVPIDLPAVGLITLRGQPMTATTRLLVECLRGVVGNSLATARHGEQLQHGR</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="53" xmlns="http://uniprot.org/uniprot">
    <accession>A9BTV0</accession>
    <name>A9BTV0_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Alpha/beta hydrolase fold</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Daci_2726</name>
        <name evidence="2" type="ordered locus">Daci_2982</name>
    </gene>
    <organism evidence="1 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
            <strain evidence="1">SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="1" key="3">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX35364.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX35620.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012204585.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_2726"/>
    <dbReference type="PRIDE" id="A9BTV0"/>
    <dbReference type="EnsemblBacteria" id="ABX35364">
        <property type="protein sequence ID" value="ABX35364"/>
        <property type="gene ID" value="Daci_2726"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="ABX35620">
        <property type="protein sequence ID" value="ABX35620"/>
        <property type="gene ID" value="Daci_2982"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_2726"/>
    <dbReference type="KEGG" id="dac:Daci_2982"/>
    <dbReference type="eggNOG" id="COG2267">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_105727_0_0_4"/>
    <dbReference type="OMA" id="HQICTEQ"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016787">
        <property type="term" value="F:hydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ABX35364.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX35620.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="226" mass="24409" checksum="EA49047540CF182A" modified="2008-01-15" version="1">MSGMTDIHPDAVLASLLDKGGRSNRQANLAKMHELCRRQHAAGSRDFSLPAIGRLAEAEGILKGRALYNAQSADYRVLIKAWSAYAGPAEPKLPKTLASHDYLMRIEDPAIRSIMQAVIAERDKLKAQLNVLKAHTLVTVDRRPLGATISAAPGTLPVAVLALSAQLTSSEREALQKAVSASYLEERGLKEGSHGEIVNERGRTVFEVGFARAVRKVLGESTPKIP</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="56" xmlns="http://uniprot.org/uniprot">
    <accession>A9BTZ0</accession>
    <name>A9BTZ0_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">Phytase-like domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Daci_2766</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="4" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX35404.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012204614.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_2766"/>
    <dbReference type="PRIDE" id="A9BTZ0"/>
    <dbReference type="EnsemblBacteria" id="ABX35404">
        <property type="protein sequence ID" value="ABX35404"/>
        <property type="gene ID" value="Daci_2766"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_2766"/>
    <dbReference type="eggNOG" id="COG4222">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_047242_0_0_4"/>
    <dbReference type="OMA" id="NDNGMSE"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027372">
        <property type="entry name" value="Phytase-like_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13449">
        <property type="entry name" value="Phytase-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="1">
        <location>
            <begin position="1"/>
            <end position="28"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5002735092" description="Phytase-like domain-containing protein" evidence="1">
        <location>
            <begin position="29"/>
            <end position="384"/>
        </location>
    </feature>
    <feature type="domain" description="Phytase-like" evidence="2">
        <location>
            <begin position="61"/>
            <end position="369"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF13449"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ABX35404.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="384" mass="41177" checksum="EDC6A16EFEF8FB29" modified="2008-01-15" version="1">MNKADKVRSPASVLLALVLAFGTATGLAGCGGSDDGPETIGSLRLIGDYSIKTKTLFDGVEFGGISGLDRAPDGSYWAISDERGGERGTPRFYNLGIQFDDKAIQAVTIRKMVTLKGRDGQPLPGTRRTVDPEGIRVAPNGNLYVSSEGNFSTDPASLFQPFVREIRVDGSFVRDFETPAAFNYVDNTTSGGRNNKLFEALAVTPDSSVFTANEDALVEDGPLTTLAAGSVIRVLKLDPATGKSGAQYAYQLPKIPLDKAASGSFPPDNGLPELLAVSNNEFIAIERAFADGVGNTIRLTRATIEPDTTDVRSFKSLVGASYKPMKRELLLEMPVTYQGVKLDNIEGISWGPRLANGNRTLVLVADNNFADNQVTQFLAFEVRP</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="31" xmlns="http://uniprot.org/uniprot">
    <accession>A9BU82</accession>
    <name>A9BU82_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Daci_3159</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="2" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX35797.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="PRIDE" id="A9BU82"/>
    <dbReference type="EnsemblBacteria" id="ABX35797">
        <property type="protein sequence ID" value="ABX35797"/>
        <property type="gene ID" value="Daci_3159"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_3159"/>
    <dbReference type="HOGENOM" id="CLU_2715707_0_0_4"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.120.330">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027443">
        <property type="entry name" value="IPNS-like_sf"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ABX35797.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="72" mass="8259" checksum="DEB61D54FD102963" modified="2008-01-15" version="1">MAGSALSILSDHAIKSIYHSVDSQLELDRTSVVYFLNPDLNKNYSSFYKRKLINFSRHIQENHISFGNAEIN</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-05-25" version="44" xmlns="http://uniprot.org/uniprot">
    <accession>A9BUI5</accession>
    <name>A9BUI5_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Putative transcriptional regulator</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Daci_1244</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="2" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX33888.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012203174.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_1244"/>
    <dbReference type="EnsemblBacteria" id="ABX33888">
        <property type="protein sequence ID" value="ABX33888"/>
        <property type="gene ID" value="Daci_1244"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_1244"/>
    <dbReference type="eggNOG" id="COG3636">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_153182_0_0_4"/>
    <dbReference type="OMA" id="LIRMFGP"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ABX33888.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="107" mass="11893" checksum="326F5F620725CFD5" modified="2008-01-15" version="1">MTLTRDFKQTVIQRIERDPAFAQALLDEAATLFLSGEPETARLVLRDLVNATVGFETLADLTHKPSKSLHRMLSPKGNPSMDNLAAIFAAIKNWLQVRFDVRVVAAT</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="50" xmlns="http://uniprot.org/uniprot">
    <accession>A9BUJ0</accession>
    <name>A9BUJ0_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_1454</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX34098.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012203384.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_1454"/>
    <dbReference type="PRIDE" id="A9BUJ0"/>
    <dbReference type="EnsemblBacteria" id="ABX34098">
        <property type="protein sequence ID" value="ABX34098"/>
        <property type="gene ID" value="Daci_1454"/>
    </dbReference>
    <dbReference type="GeneID" id="60685995"/>
    <dbReference type="KEGG" id="dac:Daci_1454"/>
    <dbReference type="eggNOG" id="COG3159">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_073320_1_0_4"/>
    <dbReference type="OMA" id="GHENDSI"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.450.40">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007435">
        <property type="entry name" value="DUF484"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029016">
        <property type="entry name" value="GAF-like_dom_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR38765">
        <property type="entry name" value="PTHR38765"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04340">
        <property type="entry name" value="DUF484"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="coiled-coil region" evidence="1">
        <location>
            <begin position="46"/>
            <end position="73"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX34098.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="237" mass="25942" checksum="45BA5A173BF98C29" modified="2008-01-15" version="1">MNSTTDIAVTEETIADYLLNHPEFFERHAEMLARVQLVSSHSPRTVSLQERQAEMLREKIKGLEHRIMDMMRHSSENASIGDKLHAWSCALAKVQDLRELPHALTASLQHVFEVPQVALRLWNVSGAQTSSIYTMGVSEDAKSFAASLTMPFCGPNMGFEPGGWLVDPDAAQSLALLTLHDGDSINPANAFGMLVLGSPDPLRFEATMGTEFLSRISALASAALSRMRPVPLTLARG</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="94" xmlns="http://uniprot.org/uniprot">
    <accession>A9BUL1</accession>
    <name>A9BUL1_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="4 5">Cell division protein FtsZ</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="4" type="primary">ftsZ</name>
        <name evidence="8" type="ordered locus">Daci_1475</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="9" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="4 5">Essential cell division protein that forms a contractile ring structure (Z ring) at the future cell division site. The regulation of the ring assembly controls the timing and the location of cell division. One of the functions of the FtsZ ring is to recruit other cell division proteins to the septum to produce a new cell wall between the dividing cells. Binds GTP and shows GTPase activity.</text>
    </comment>
    <comment type="subunit">
        <text evidence="4">Homodimer. Polymerizes to form a dynamic ring structure in a strictly GTP-dependent manner. Interacts directly with several other division proteins.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="4">Cytoplasm</location>
        </subcellularLocation>
        <text evidence="4">Assembles at midcell at the inner surface of the cytoplasmic membrane.</text>
    </comment>
    <comment type="similarity">
        <text evidence="1 4 5">Belongs to the FtsZ family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX34119.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012203405.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_1475"/>
    <dbReference type="PRIDE" id="A9BUL1"/>
    <dbReference type="EnsemblBacteria" id="ABX34119">
        <property type="protein sequence ID" value="ABX34119"/>
        <property type="gene ID" value="Daci_1475"/>
    </dbReference>
    <dbReference type="GeneID" id="60686016"/>
    <dbReference type="KEGG" id="dac:Daci_1475"/>
    <dbReference type="eggNOG" id="COG0206">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_024865_0_5_4"/>
    <dbReference type="OMA" id="GNPSIGQ"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0032153">
        <property type="term" value="C:cell division site"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005525">
        <property type="term" value="F:GTP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003924">
        <property type="term" value="F:GTPase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000917">
        <property type="term" value="P:division septum assembly"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043093">
        <property type="term" value="P:FtsZ-dependent cytokinesis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051258">
        <property type="term" value="P:protein polymerization"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd02201">
        <property type="entry name" value="FtsZ_type1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.1330.20">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.1440">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00909">
        <property type="entry name" value="FtsZ"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000158">
        <property type="entry name" value="Cell_div_FtsZ"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020805">
        <property type="entry name" value="Cell_div_FtsZ_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045061">
        <property type="entry name" value="FtsZ/CetZ"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR024757">
        <property type="entry name" value="FtsZ_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008280">
        <property type="entry name" value="Tub_FtsZ_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037103">
        <property type="entry name" value="Tubulin/FtsZ-like_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018316">
        <property type="entry name" value="Tubulin/FtsZ_2-layer-sand-dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036525">
        <property type="entry name" value="Tubulin/FtsZ_GTPase_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003008">
        <property type="entry name" value="Tubulin_FtsZ_GTPase"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30314">
        <property type="entry name" value="PTHR30314"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12327">
        <property type="entry name" value="FtsZ_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00091">
        <property type="entry name" value="Tubulin"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00423">
        <property type="entry name" value="CELLDVISFTSZ"/>
    </dbReference>
    <dbReference type="SMART" id="SM00864">
        <property type="entry name" value="Tubulin"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00865">
        <property type="entry name" value="Tubulin_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52490">
        <property type="entry name" value="SSF52490"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55307">
        <property type="entry name" value="SSF55307"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00065">
        <property type="entry name" value="ftsZ"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01135">
        <property type="entry name" value="FTSZ_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4 5" id="KW-0131">Cell cycle</keyword>
    <keyword evidence="4 5 8" id="KW-0132">Cell division</keyword>
    <keyword evidence="4" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="3 4 5" id="KW-0342">GTP-binding</keyword>
    <keyword evidence="2 4 5" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4 5" id="KW-0717">Septation</keyword>
    <feature type="domain" description="Tubulin" evidence="6">
        <location>
            <begin position="16"/>
            <end position="205"/>
        </location>
    </feature>
    <feature type="domain" description="Tubulin_C" evidence="7">
        <location>
            <begin position="207"/>
            <end position="326"/>
        </location>
    </feature>
    <feature type="binding site" evidence="4">
        <location>
            <begin position="24"/>
            <end position="28"/>
        </location>
        <ligand>
            <name>GTP</name>
            <dbReference type="ChEBI" id="CHEBI:37565"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="4">
        <location>
            <begin position="108"/>
            <end position="110"/>
        </location>
        <ligand>
            <name>GTP</name>
            <dbReference type="ChEBI" id="CHEBI:37565"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="4">
        <location>
            <position position="139"/>
        </location>
        <ligand>
            <name>GTP</name>
            <dbReference type="ChEBI" id="CHEBI:37565"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="4">
        <location>
            <position position="143"/>
        </location>
        <ligand>
            <name>GTP</name>
            <dbReference type="ChEBI" id="CHEBI:37565"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="4">
        <location>
            <position position="187"/>
        </location>
        <ligand>
            <name>GTP</name>
            <dbReference type="ChEBI" id="CHEBI:37565"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00009690"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023134"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00909"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="RuleBase" id="RU000631"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="SMART" id="SM00864"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="SMART" id="SM00865"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="ABX34119.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="412" mass="42475" checksum="B5DFF7A8E9929BE2" modified="2008-01-15" version="1">MPIDMIEVEEFNQGTQIKVIGVGGGGGNAVEHMIARNVQGVEFVCANTDAQALLRSSAHRTIQLGGSGLGAGSKPDKGREAAEMAEDDIRTAIEGAHMLFITAGMGGGTGTGAAPVIARVAKEMGILTVGVVTKPFEWEGGRRMANADSGLNELEANVDSLIVVLNEKLLDVLGDDISQDEAFAHANDVLKNAVGGIAEIINEYGHVNVDFEDVRTVMGEPGKAMMGTAKAAGPDRARIAAEQAVACPLLEGIDLSGAKGVLVLVTAAKGSLKLSESRLAMSTINAYASPDAHVIYGAAYDDTLGDEIRVTVVATGLSRPSARRQNMQVVQGGLRTGTDNMSYQLPSASMGAATAAGGLVGGAAGGADYANNMSVPSVWRTNRTQAAARVDALASGGMDDLEIPAFLRKQAD</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="65" xmlns="http://uniprot.org/uniprot">
    <accession>A9BUW5</accession>
    <name>A9BUW5_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Glyoxalase/bleomycin resistance protein/dioxygenase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_1785</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX34427.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012203712.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_1785"/>
    <dbReference type="PRIDE" id="A9BUW5"/>
    <dbReference type="EnsemblBacteria" id="ABX34427">
        <property type="protein sequence ID" value="ABX34427"/>
        <property type="gene ID" value="Daci_1785"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_1785"/>
    <dbReference type="eggNOG" id="COG0346">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_046006_12_4_4"/>
    <dbReference type="OMA" id="IYGSWIN"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051213">
        <property type="term" value="F:dioxygenase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.10.180.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029068">
        <property type="entry name" value="Glyas_Bleomycin-R_OHBP_Dase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004360">
        <property type="entry name" value="Glyas_Fos-R_dOase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037523">
        <property type="entry name" value="VOC"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00903">
        <property type="entry name" value="Glyoxalase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54593">
        <property type="entry name" value="SSF54593"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51819">
        <property type="entry name" value="VOC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0223">Dioxygenase</keyword>
    <keyword evidence="2" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="VOC" evidence="1">
        <location>
            <begin position="7"/>
            <end position="132"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="PROSITE" id="PS51819"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX34427.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="152" mass="16454" checksum="681F3BBFE22C654C" modified="2008-01-15" version="1">MPIKVLELHHVGFGVNHAQADAMLDFYREVLNLPQDAARWKIPGIYGSWINLPNGSQLHILGSEGPSRYAQGPGKDPVSNHIALAVDDILGAEQELQARGVDYFTLDNVASPSLKQLFLRDPAGNLVELHQSNARAPGIAQAEQDAARAGNE</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="62" xmlns="http://uniprot.org/uniprot">
    <accession>A9BUW6</accession>
    <name>A9BUW6_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Flavoprotein oxygenase DIM6/NTAB family-like protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_1786</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX34428.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012203713.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_1786"/>
    <dbReference type="PRIDE" id="A9BUW6"/>
    <dbReference type="EnsemblBacteria" id="ABX34428">
        <property type="protein sequence ID" value="ABX34428"/>
        <property type="gene ID" value="Daci_1786"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_1786"/>
    <dbReference type="eggNOG" id="COG1853">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_059021_3_1_4"/>
    <dbReference type="OMA" id="RVRDNTT"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0010181">
        <property type="term" value="F:FMN binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016646">
        <property type="term" value="F:oxidoreductase activity, acting on the CH-NH group of donors, NAD or NADP as acceptor"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.30.110.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002563">
        <property type="entry name" value="Flavin_Rdtase-like_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012349">
        <property type="entry name" value="Split_barrel_FMN-bd"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01613">
        <property type="entry name" value="Flavin_Reduct"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00903">
        <property type="entry name" value="Flavin_Reduct"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Flavin_Reduct" evidence="1">
        <location>
            <begin position="19"/>
            <end position="172"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="SMART" id="SM00903"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX34428.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="228" mass="24656" checksum="2F9C8DC2C42F560F" modified="2008-01-15" version="1">MYFEMQSLNSEQRSNILHSLVLPRPIAWISSVDGDGTVNVAPFSFFNAMSGDPPLLCVCIGSRQGVLKDTARNIAATGEFVVNLVSEPLARRMAVTAIEFGAQVDESAQAGLVLGDARRVKAPRIVDSPASFECRVRQIIDIDGVRSLVLADVLAAHVMDAAVVDGELMYFDPAPMELIARLQNPGWYGRVGDAFQMPTPSVAQWDAMQRQGVSDSYLAWADDGAAAR</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="62" xmlns="http://uniprot.org/uniprot">
    <accession>A9BV46</accession>
    <name>A9BV46_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Type II secretion system protein E</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Daci_2070</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="4" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the GSP E family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX34710.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012203993.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_2070"/>
    <dbReference type="PRIDE" id="A9BV46"/>
    <dbReference type="EnsemblBacteria" id="ABX34710">
        <property type="protein sequence ID" value="ABX34710"/>
        <property type="gene ID" value="Daci_2070"/>
    </dbReference>
    <dbReference type="GeneID" id="60686474"/>
    <dbReference type="KEGG" id="dac:Daci_2070"/>
    <dbReference type="eggNOG" id="COG4962">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_005379_4_1_4"/>
    <dbReference type="OMA" id="GLPGMCT"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001482">
        <property type="entry name" value="T2SS/T4SS"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00437">
        <property type="entry name" value="T2SSE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="T2SP_E" evidence="2">
        <location>
            <begin position="93"/>
            <end position="368"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00006611"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF00437"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ABX34710.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="440" mass="48800" checksum="2F40C88B3C6CF380" modified="2008-01-15" version="1">MTTTAYSHLADAQASEFERSALFLDLKNRTHEHLLSRIEELGAEFGRWSQAAIAQFVLMELDSFIRLHSVPVNEQEALQVARALTRELTGLGPLQPLLEDPLVEDILINGHGNIYVSRGGVLQRETLHFKDDEHVLRIVRRILAPLGRRLDESSPMVDARLPDGGRINVIIEPLSIDGPSVSIRKFRKDPLTPPELVQLGTFNQDICRILEMAVQARCNILVSGGTSSGKTSLLNALASFIPGSERIVSIEDTAELALNHNHVVRLESRPGGFDGSGHVSIRDLLRNSLRMRPDRIIVGEVRGGEVLELLQAMNTGHDGSMGTIHASSPRECLYRAEMLAGFAGFQGSEVSLRRQIANAVDFIVQIGRLSNGRRRLLSLTEVTGMTDNMISMQELYRYEPQVGPDGQEIDQWVSLGISPHSPKLLSWWRMQQQTGHGGVR</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="77" xmlns="http://uniprot.org/uniprot">
    <accession>A9BV54</accession>
    <name>A9BV54_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="8">Membrane fusion protein (MFP) family protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="12" type="ordered locus">Daci_2078</name>
    </gene>
    <organism evidence="12 13">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="12 13" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="13">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="13" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="13">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="8">Cell inner membrane</location>
            <topology evidence="8">Single-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="1 8">Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX34718.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012204001.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_2078"/>
    <dbReference type="PRIDE" id="A9BV54"/>
    <dbReference type="EnsemblBacteria" id="ABX34718">
        <property type="protein sequence ID" value="ABX34718"/>
        <property type="gene ID" value="Daci_2078"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_2078"/>
    <dbReference type="eggNOG" id="COG0845">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_023976_8_0_4"/>
    <dbReference type="OMA" id="FPIVPGM"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015031">
        <property type="term" value="P:protein transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR039562">
        <property type="entry name" value="MFP_biotin_lipoyl_2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010129">
        <property type="entry name" value="T1SS_HlyD"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13533">
        <property type="entry name" value="Biotin_lipoyl_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01843">
        <property type="entry name" value="type_I_hlyD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4 8" id="KW-0997">Cell inner membrane</keyword>
    <keyword evidence="3 8" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="9" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="7 8" id="KW-0472">Membrane</keyword>
    <keyword evidence="13" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="5 8" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="6 8" id="KW-1133">Transmembrane helix</keyword>
    <keyword evidence="2 8" id="KW-0813">Transport</keyword>
    <feature type="transmembrane region" description="Helical" evidence="8">
        <location>
            <begin position="49"/>
            <end position="67"/>
        </location>
    </feature>
    <feature type="domain" description="Biotin_lipoyl_2" evidence="11">
        <location>
            <begin position="89"/>
            <end position="128"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="10">
        <location>
            <begin position="20"/>
            <end position="40"/>
        </location>
    </feature>
    <feature type="coiled-coil region" evidence="9">
        <location>
            <begin position="181"/>
            <end position="215"/>
        </location>
    </feature>
    <feature type="coiled-coil region" evidence="9">
        <location>
            <begin position="276"/>
            <end position="303"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00009477"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022448"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022519"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="RuleBase" id="RU365093"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="11">
        <source>
            <dbReference type="Pfam" id="PF13533"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="EMBL" id="ABX34718.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="13">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="458" mass="49713" checksum="BA9639D076035E09" modified="2008-01-15" version="1">MRAGRYDDLPLVLRQSSEAQAAVHGQPPADASGATPPSPRRTALARGKWLLVIPVAALVVTGLFYPVENVVVASGQVIPSDRVQTVQHLEGGIVTAVHVREGQAVTQGQPLLEIDLGSNSLNLEQLTARMATAQAVKARLGAESQGRPLQRTAFPADLDAQVVQAELGAFSARALEHQGSLAAAQAQLQQARGDVAQVQARIEGLETNLRLHQQEASIAGQLASEQLIGQLEVLDKQRALEQVRAELAASRQTLFSNRAKIEQAQAKLQETQGAFRRRASDELAQTERELASLNEDLVRARTQRTRTAVLAPTSGFVKGLRSSGAGWVVKPGEPILEIVPDKDEVIVEARLSPADRGYVHPGQATRVKISAYDFLRYGSVPGQVTLVAADADRDPNLADSPSYFRIQASLEQPWVGRTDNRITTGMQAELDLLLGHEPFIWYLLRPVLRIQSEAFREP</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="67" xmlns="http://uniprot.org/uniprot">
    <accession>A9BV72</accession>
    <name>A9BV72_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="7">Resolvase domain</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ordered locus">Daci_2096</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="8" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX34736.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012204019.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_2096"/>
    <dbReference type="PRIDE" id="A9BV72"/>
    <dbReference type="EnsemblBacteria" id="ABX34736">
        <property type="protein sequence ID" value="ABX34736"/>
        <property type="gene ID" value="Daci_2096"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_2096"/>
    <dbReference type="eggNOG" id="COG1961">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_010686_8_0_4"/>
    <dbReference type="OMA" id="RIIYHRV"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000150">
        <property type="term" value="F:DNA strand exchange activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015074">
        <property type="term" value="P:DNA integration"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.1390">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006118">
        <property type="entry name" value="Recombinase_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006119">
        <property type="entry name" value="Resolv_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036162">
        <property type="entry name" value="Resolvase-like_N_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00239">
        <property type="entry name" value="Resolvase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00857">
        <property type="entry name" value="Resolvase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53041">
        <property type="entry name" value="SSF53041"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00397">
        <property type="entry name" value="RECOMBINASES_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00398">
        <property type="entry name" value="RECOMBINASES_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51736">
        <property type="entry name" value="RECOMBINASES_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0229">DNA integration</keyword>
    <keyword evidence="3" id="KW-0233">DNA recombination</keyword>
    <keyword evidence="2" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Resolvase/invertase-type recombinase catalytic" evidence="6">
        <location>
            <begin position="1"/>
            <end position="134"/>
        </location>
    </feature>
    <feature type="active site" description="O-(5'-phospho-DNA)-serine intermediate" evidence="4 5">
        <location>
            <position position="9"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022908"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023172"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="PIRSR" id="PIRSR606118-50"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU10137"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="PROSITE" id="PS51736"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="ABX34736.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="190" mass="20791" checksum="0A2CEB741370912B" modified="2008-01-15" version="1">MLVGYARVSTQDQDTALQIEAMRAAGVLKVFEEKASGARIDRPVLWECLGSLRSGDQFVFYKLDRVARSLSDLLKILDRVERAGASIKSLTEPIDTGSAAGRLMLQILGAMAEFERTLIRERTVAGQREAMARGVHCGRSLSVDAETAAAIVDAYASGLYTLKGVGQRYGVSDSVVKRLVYKRTKPSYRS</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="69" xmlns="http://uniprot.org/uniprot">
    <accession>A9BV93</accession>
    <name>A9BV93_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="6">Glyoxylate carboligase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="6" type="ordered locus">Daci_2117</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="7" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1 2">Belongs to the TPP enzyme family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX34757.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012204040.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_2117"/>
    <dbReference type="PRIDE" id="A9BV93"/>
    <dbReference type="EnsemblBacteria" id="ABX34757">
        <property type="protein sequence ID" value="ABX34757"/>
        <property type="gene ID" value="Daci_2117"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_2117"/>
    <dbReference type="eggNOG" id="COG3960">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_013748_3_1_4"/>
    <dbReference type="OMA" id="TLMGWGA"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016874">
        <property type="term" value="F:ligase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000287">
        <property type="term" value="F:magnesium ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009028">
        <property type="term" value="F:tartronate-semialdehyde synthase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030976">
        <property type="term" value="F:thiamine pyrophosphate binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009436">
        <property type="term" value="P:glyoxylate catabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029035">
        <property type="entry name" value="DHS-like_NAD/FAD-binding_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006397">
        <property type="entry name" value="Glyox_carbo_lig"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029061">
        <property type="entry name" value="THDP-binding"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012000">
        <property type="entry name" value="Thiamin_PyroP_enz_cen_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012001">
        <property type="entry name" value="Thiamin_PyroP_enz_TPP-bd_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045229">
        <property type="entry name" value="TPP_enz"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011766">
        <property type="entry name" value="TPP_enzyme-bd_C"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR18968">
        <property type="entry name" value="PTHR18968"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR18968:SF14">
        <property type="entry name" value="PTHR18968:SF14"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02775">
        <property type="entry name" value="TPP_enzyme_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00205">
        <property type="entry name" value="TPP_enzyme_M"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02776">
        <property type="entry name" value="TPP_enzyme_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52467">
        <property type="entry name" value="SSF52467"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52518">
        <property type="entry name" value="SSF52518"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01504">
        <property type="entry name" value="glyox_carbo_lig"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="6" id="KW-0436">Ligase</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0786">Thiamine pyrophosphate</keyword>
    <feature type="domain" description="TPP_enzyme_N" evidence="5">
        <location>
            <begin position="4"/>
            <end position="172"/>
        </location>
    </feature>
    <feature type="domain" description="TPP_enzyme_M" evidence="3">
        <location>
            <begin position="193"/>
            <end position="327"/>
        </location>
    </feature>
    <feature type="domain" description="TPP_enzyme_C" evidence="4">
        <location>
            <begin position="395"/>
            <end position="558"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00007812"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="RuleBase" id="RU362132"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF00205"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="Pfam" id="PF02775"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="Pfam" id="PF02776"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="ABX34757.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="596" mass="64867" checksum="B08D0D4ED671985B" modified="2008-01-15" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="80" xmlns="http://uniprot.org/uniprot">
    <accession>A9BVI3</accession>
    <name>A9BVI3_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">Phosphonoacetaldehyde hydrolase</fullName>
            <shortName evidence="2">Phosphonatase</shortName>
            <ecNumber evidence="2">3.11.1.1</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="2">Phosphonoacetaldehyde phosphonohydrolase</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="2" type="primary">phnX</name>
        <name evidence="3" type="ordered locus">Daci_2412</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="4" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="2">Involved in phosphonate degradation.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="2">
            <text>H2O + phosphonoacetaldehyde = acetaldehyde + H(+) + phosphate</text>
            <dbReference type="Rhea" id="RHEA:18905"/>
            <dbReference type="ChEBI" id="CHEBI:15343"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:43474"/>
            <dbReference type="ChEBI" id="CHEBI:58383"/>
            <dbReference type="EC" id="3.11.1.1"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="2">
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </cofactor>
        <text evidence="2">Binds 1 Mg(2+) ion per subunit.</text>
    </comment>
    <comment type="subunit">
        <text evidence="2">Homodimer.</text>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the HAD-like hydrolase superfamily. PhnX family.</text>
    </comment>
    <dbReference type="EC" id="3.11.1.1" evidence="2"/>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX35050.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012204332.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_2412"/>
    <dbReference type="PRIDE" id="A9BVI3"/>
    <dbReference type="EnsemblBacteria" id="ABX35050">
        <property type="protein sequence ID" value="ABX35050"/>
        <property type="gene ID" value="Daci_2412"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_2412"/>
    <dbReference type="eggNOG" id="COG0637">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_045011_12_0_4"/>
    <dbReference type="OMA" id="GRPAPWM"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000287">
        <property type="term" value="F:magnesium ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0050194">
        <property type="term" value="F:phosphonoacetaldehyde hydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0019700">
        <property type="term" value="P:organic phosphonate catabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.150.240">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.1000">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01375">
        <property type="entry name" value="PhnX"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036412">
        <property type="entry name" value="HAD-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006439">
        <property type="entry name" value="HAD-SF_hydro_IA"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041492">
        <property type="entry name" value="HAD_2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023214">
        <property type="entry name" value="HAD_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023198">
        <property type="entry name" value="PGP-like_dom2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006323">
        <property type="entry name" value="Phosphonoacetald_hydro"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13419">
        <property type="entry name" value="HAD_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56784">
        <property type="entry name" value="SSF56784"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01509">
        <property type="entry name" value="HAD-SF-IA-v3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01422">
        <property type="entry name" value="phosphonatase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2 3" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="2" id="KW-0460">Magnesium</keyword>
    <keyword evidence="2" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1 2" id="KW-0704">Schiff base</keyword>
    <feature type="active site" description="Nucleophile" evidence="2">
        <location>
            <position position="22"/>
        </location>
    </feature>
    <feature type="active site" description="Schiff-base intermediate with substrate" evidence="2">
        <location>
            <position position="63"/>
        </location>
    </feature>
    <feature type="binding site" evidence="2">
        <location>
            <position position="22"/>
        </location>
        <ligand>
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="2">
        <location>
            <position position="24"/>
        </location>
        <ligand>
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="2">
        <location>
            <position position="197"/>
        </location>
        <ligand>
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023270"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01375"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ABX35050.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="281" mass="29646" checksum="E86226FE360A0801" modified="2008-01-15" version="1">MNHTTVSTAAADLSPLQAVIFDWAGTLVDFGSLAPTQIFVEAFASFGITITLAQARGPMGLSKWQHIHELLQDEGIRAQWHKAFGQQPGDADVDAIYARFMPMQIAKVGEFSAPIEGAPELLGWLRAQGLKVGSCSGYPREVLNQLLPQAAANGLAPDHVVAGDEMAAGGRPGPFMALANVLALGIGDVRACVKVDDTVPGIEEGRNAGMWTVGLTLSGNEVGYSPAELAAAPAEEVRERVARAEAKLRAAGAHHVIASVKDLPQVLERIAQDMRAGRMPG</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="77" xmlns="http://uniprot.org/uniprot">
    <accession>A9BVS9</accession>
    <name>A9BVS9_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="10">Cobalamin biosynthesis protein CobD</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="10" type="primary">cobD</name>
        <name evidence="11" type="ordered locus">Daci_2804</name>
    </gene>
    <organism evidence="11 12">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="11 12" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="12">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="12" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="12">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="10">Converts cobyric acid to cobinamide by the addition of aminopropanol on the F carboxylic group.</text>
    </comment>
    <comment type="pathway">
        <text evidence="3 10">Cofactor biosynthesis; adenosylcobalamin biosynthesis.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="2 10">Cell membrane</location>
            <topology evidence="2 10">Multi-pass membrane protein</topology>
        </subcellularLocation>
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="4 10">Belongs to the CobD/CbiB family.</text>
    </comment>
    <comment type="caution">
        <text evidence="10">Lacks conserved residue(s) required for the propagation of feature annotation.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX35442.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012204652.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_2804"/>
    <dbReference type="PRIDE" id="A9BVS9"/>
    <dbReference type="EnsemblBacteria" id="ABX35442">
        <property type="protein sequence ID" value="ABX35442"/>
        <property type="gene ID" value="Daci_2804"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_2804"/>
    <dbReference type="eggNOG" id="COG1270">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_054212_0_2_4"/>
    <dbReference type="OMA" id="WGYRNER"/>
    <dbReference type="UniPathway" id="UPA00148"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015420">
        <property type="term" value="F:ABC-type vitamin B12 transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0048472">
        <property type="term" value="F:threonine-phosphate decarboxylase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009236">
        <property type="term" value="P:cobalamin biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniPathway"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00024">
        <property type="entry name" value="CobD_CbiB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004485">
        <property type="entry name" value="Cobalamin_biosynth_CobD/CbiB"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR34308">
        <property type="entry name" value="PTHR34308"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03186">
        <property type="entry name" value="CobD_Cbib"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00380">
        <property type="entry name" value="cobD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5 10" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="6 10" id="KW-0169">Cobalamin biosynthesis</keyword>
    <keyword evidence="9 10" id="KW-0472">Membrane</keyword>
    <keyword evidence="12" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="7 10" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="8 10" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="10">
        <location>
            <begin position="94"/>
            <end position="115"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="10">
        <location>
            <begin position="198"/>
            <end position="219"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="10">
        <location>
            <begin position="340"/>
            <end position="360"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00004651"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00004953"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00006263"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022573"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00024"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="EMBL" id="ABX35442.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="364" mass="39712" checksum="FF2BA78B3263AF8F" modified="2008-01-15" version="1">MSDSPSWQLLGAALSPLWWCWQALSQPQAQVQAEPWARHALAAALAVPVALLIDRLWGEPPVWIHPVVAMGRLLAAVGRRLAPREEHVRDWPRFALGAVAWCLLALLFFTIYAFIQWLLPPMPWWLGALVLGVLLKPLLSWRMLRDEVLAVEAALQQSLPAGRERLTWLVSRDTARLDAGQVRESAIETLAENLSDSVLAPLFWFAVAGLPGAALYRLANTADAMWGYPGWRGQGDDRRHWQWAGKWTARADDLLNWIPARLTALLLALSGLAAGRRPGWGALRHDARITPSPNGGWPMGAMARLLGVRLGKPGVYVLNPAGRVPQAAELQQAVAHAGRVVAMLVAAGLAAALVLGWAMAGKTP</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="61" xmlns="http://uniprot.org/uniprot">
    <accession>A9BVU7</accession>
    <name>A9BVU7_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">UPF0311 protein Daci_2822</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_2822</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the UPF0311 family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX35460.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012204670.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_2822"/>
    <dbReference type="PRIDE" id="A9BVU7"/>
    <dbReference type="EnsemblBacteria" id="ABX35460">
        <property type="protein sequence ID" value="ABX35460"/>
        <property type="gene ID" value="Daci_2822"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_2822"/>
    <dbReference type="eggNOG" id="ENOG5032SS8">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_096872_4_3_4"/>
    <dbReference type="OMA" id="PRFETGH"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00775">
        <property type="entry name" value="UPF0311"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020915">
        <property type="entry name" value="UPF0311"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37315">
        <property type="entry name" value="PTHR37315"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00775"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX35460.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="162" mass="17718" checksum="489ED59E8B9CBA72" modified="2008-01-15" version="1">MPDDVPQLAALPDPRFRFFADLSVQVGPPQEVGATAHGGRRLIPILGGTAQGDGWSARVLPGGADFQRIVHGGLAELDARYVLETDAGDLIYVCNQALRSGDPAFMAKLARGEPVDPAHIYFRCAPRMETASRALAWINERLFFGTGARHPDRVQMRFHELL</sequence>
</entry>
<entry dataset="Swiss-Prot" created="2009-05-26" modified="2022-08-03" version="81" xmlns="http://uniprot.org/uniprot">
    <accession>A9BVZ2</accession>
    <name>RIMO_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Ribosomal protein S12 methylthiotransferase RimO</fullName>
            <shortName evidence="1">S12 MTTase</shortName>
            <shortName evidence="1">S12 methylthiotransferase</shortName>
            <ecNumber evidence="1">2.8.4.4</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="1">Ribosomal protein S12 (aspartate-C(3))-methylthiotransferase</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="1">Ribosome maturation factor RimO</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="1" type="primary">rimO</name>
        <name type="ordered locus">Daci_2867</name>
    </gene>
    <organism>
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference key="1">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain>DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="1">Catalyzes the methylthiolation of an aspartic acid residue of ribosomal protein S12.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>[sulfur carrier]-SH + AH2 + L-aspartate(89)-[ribosomal protein uS12]-hydrogen + 2 S-adenosyl-L-methionine = 3-methylsulfanyl-L-aspartate(89)-[ribosomal protein uS12]-hydrogen + 5'-deoxyadenosine + [sulfur carrier]-H + A + 2 H(+) + L-methionine + S-adenosyl-L-homocysteine</text>
            <dbReference type="Rhea" id="RHEA:37087"/>
            <dbReference type="Rhea" id="RHEA-COMP:10460"/>
            <dbReference type="Rhea" id="RHEA-COMP:10461"/>
            <dbReference type="Rhea" id="RHEA-COMP:14737"/>
            <dbReference type="Rhea" id="RHEA-COMP:14739"/>
            <dbReference type="ChEBI" id="CHEBI:13193"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:17319"/>
            <dbReference type="ChEBI" id="CHEBI:17499"/>
            <dbReference type="ChEBI" id="CHEBI:29917"/>
            <dbReference type="ChEBI" id="CHEBI:29961"/>
            <dbReference type="ChEBI" id="CHEBI:57844"/>
            <dbReference type="ChEBI" id="CHEBI:57856"/>
            <dbReference type="ChEBI" id="CHEBI:59789"/>
            <dbReference type="ChEBI" id="CHEBI:64428"/>
            <dbReference type="ChEBI" id="CHEBI:73599"/>
            <dbReference type="EC" id="2.8.4.4"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>[4Fe-4S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:49883"/>
        </cofactor>
        <text evidence="1">Binds 2 [4Fe-4S] clusters. One cluster is coordinated with 3 cysteines and an exchangeable S-adenosyl-L-methionine.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="1">Belongs to the methylthiotransferase family. RimO subfamily.</text>
    </comment>
    <dbReference type="EC" id="2.8.4.4" evidence="1"/>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX35505.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A9BVZ2"/>
    <dbReference type="SMR" id="A9BVZ2"/>
    <dbReference type="STRING" id="398578.Daci_2867"/>
    <dbReference type="PRIDE" id="A9BVZ2"/>
    <dbReference type="EnsemblBacteria" id="ABX35505">
        <property type="protein sequence ID" value="ABX35505"/>
        <property type="gene ID" value="Daci_2867"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_2867"/>
    <dbReference type="eggNOG" id="COG0621">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_018697_0_0_4"/>
    <dbReference type="OMA" id="HYAYPTG"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0051539">
        <property type="term" value="F:4 iron, 4 sulfur cluster binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0103039">
        <property type="term" value="F:protein methylthiotransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0018339">
        <property type="term" value="P:peptidyl-L-beta-methylthioaspartic acid biosynthetic process from peptidyl-aspartic acid"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006400">
        <property type="term" value="P:tRNA modification"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.50.140">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.12160">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.80.30.20">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01865">
        <property type="entry name" value="MTTase_RimO"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006638">
        <property type="entry name" value="Elp3/MiaB/NifB"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005839">
        <property type="entry name" value="Methylthiotransferase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020612">
        <property type="entry name" value="Methylthiotransferase_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013848">
        <property type="entry name" value="Methylthiotransferase_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038135">
        <property type="entry name" value="Methylthiotransferase_N_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012340">
        <property type="entry name" value="NA-bd_OB-fold"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005840">
        <property type="entry name" value="Ribosomal_S12_MeSTrfase_RimO"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041582">
        <property type="entry name" value="RimO_TRAM"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007197">
        <property type="entry name" value="rSAM"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023404">
        <property type="entry name" value="rSAM_horseshoe"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002792">
        <property type="entry name" value="TRAM_dom"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR43837">
        <property type="entry name" value="PTHR43837"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04055">
        <property type="entry name" value="Radical_SAM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF18693">
        <property type="entry name" value="TRAM_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00919">
        <property type="entry name" value="UPF0004"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SFLD" id="SFLDG01061">
        <property type="entry name" value="methylthiotransferase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SFLD" id="SFLDF00274">
        <property type="entry name" value="ribosomal_protein_S12_methylth"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00729">
        <property type="entry name" value="Elp3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00089">
        <property type="entry name" value="TIGR00089"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01125">
        <property type="entry name" value="TIGR01125"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51449">
        <property type="entry name" value="MTTASE_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01278">
        <property type="entry name" value="MTTASE_RADICAL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51918">
        <property type="entry name" value="RADICAL_SAM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50926">
        <property type="entry name" value="TRAM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword id="KW-0004">4Fe-4S</keyword>
    <keyword id="KW-0963">Cytoplasm</keyword>
    <keyword id="KW-0408">Iron</keyword>
    <keyword id="KW-0411">Iron-sulfur</keyword>
    <keyword id="KW-0479">Metal-binding</keyword>
    <keyword id="KW-1185">Reference proteome</keyword>
    <keyword id="KW-0949">S-adenosyl-L-methionine</keyword>
    <keyword id="KW-0808">Transferase</keyword>
    <feature type="chain" id="PRO_0000374801" description="Ribosomal protein S12 methylthiotransferase RimO">
        <location>
            <begin position="1"/>
            <end position="471"/>
        </location>
    </feature>
    <feature type="domain" description="MTTase N-terminal" evidence="1">
        <location>
            <begin position="19"/>
            <end position="134"/>
        </location>
    </feature>
    <feature type="domain" description="Radical SAM core" evidence="2">
        <location>
            <begin position="155"/>
            <end position="396"/>
        </location>
    </feature>
    <feature type="domain" description="TRAM" evidence="1">
        <location>
            <begin position="399"/>
            <end position="471"/>
        </location>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <position position="28"/>
        </location>
        <ligand>
            <name>[4Fe-4S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:49883"/>
            <label>1</label>
        </ligand>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <position position="64"/>
        </location>
        <ligand>
            <name>[4Fe-4S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:49883"/>
            <label>1</label>
        </ligand>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <position position="93"/>
        </location>
        <ligand>
            <name>[4Fe-4S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:49883"/>
            <label>1</label>
        </ligand>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <position position="169"/>
        </location>
        <ligand>
            <name>[4Fe-4S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:49883"/>
            <label>2</label>
            <note>4Fe-4S-S-AdoMet</note>
        </ligand>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <position position="173"/>
        </location>
        <ligand>
            <name>[4Fe-4S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:49883"/>
            <label>2</label>
            <note>4Fe-4S-S-AdoMet</note>
        </ligand>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <position position="176"/>
        </location>
        <ligand>
            <name>[4Fe-4S] cluster</name>
            <dbReference type="ChEBI" id="CHEBI:49883"/>
            <label>2</label>
            <note>4Fe-4S-S-AdoMet</note>
        </ligand>
    </feature>
    <evidence type="ECO:0000255" key="1">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01865"/>
        </source>
    </evidence>
    <evidence type="ECO:0000255" key="2">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU01266"/>
        </source>
    </evidence>
    <sequence length="471" mass="51340" checksum="80C47E4617D7C320" modified="2008-01-15" version="1">MTPTSDATTMTTPAGAAAPRVGFVSLGCPKALTDSELILTQLSAEGYQTSKTFEGADLVIVNTCGFIDDAVRESLDTIGEALAENGKVIVTGCLGAKAGKDGGNLIQEVHPSVLAVTGPHATQEVMNAVHTHLPKPHDPFIDLVPGAFGEAGIKLTPRHYAYLKISEGCNHRCTFCIIPSMRGDLVSRPVGDVLKEARALFEGGVKELLVISQDTSAYGVDVKYRTGFWDGKPVKTRMLELVQTLAEIAEPYGAWVRLHYVYPYPSVDEIIPFMATGRVLPYLDVPFQHSHPDVLKRMKRPANGERNLERLQRWREICPDLVIRSTFIAGFPGETEQEFEHLLQFLREAQIDRAGCFAYSPVEGAAANEIPGMLPLEVREERRARFMAVAEEVSTARLQKRVGQTMQVLVDKSVGLGKKGGVGRSYADAPEIDGLVHLLPPEKASKTYKVGDFVKARIVGTQGHDLVGQPV</sequence>
</entry>
<entry dataset="Swiss-Prot" created="2009-03-24" modified="2022-08-03" version="84" xmlns="http://uniprot.org/uniprot">
    <accession>A9BVZ6</accession>
    <name>EFP_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">Elongation factor P</fullName>
            <shortName evidence="1">EF-P</shortName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="1" type="primary">efp</name>
        <name type="ordered locus">Daci_2871</name>
    </gene>
    <organism>
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference key="1">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain>DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="1">Involved in peptide bond synthesis. Stimulates efficient translation and peptide-bond synthesis on native or reconstituted 70S ribosomes in vitro. Probably functions indirectly by altering the affinity of the ribosome for aminoacyl-tRNA, thus increasing their reactivity as acceptors for peptidyl transferase.</text>
    </comment>
    <comment type="pathway">
        <text evidence="1">Protein biosynthesis; polypeptide chain elongation.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="1">Belongs to the elongation factor P family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX35509.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012204719.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A9BVZ6"/>
    <dbReference type="SMR" id="A9BVZ6"/>
    <dbReference type="STRING" id="398578.Daci_2871"/>
    <dbReference type="PRIDE" id="A9BVZ6"/>
    <dbReference type="EnsemblBacteria" id="ABX35509">
        <property type="protein sequence ID" value="ABX35509"/>
        <property type="gene ID" value="Daci_2871"/>
    </dbReference>
    <dbReference type="GeneID" id="60687147"/>
    <dbReference type="KEGG" id="dac:Daci_2871"/>
    <dbReference type="eggNOG" id="COG0231">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_074944_2_1_4"/>
    <dbReference type="OMA" id="LYRMRMY"/>
    <dbReference type="UniPathway" id="UPA00345"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003746">
        <property type="term" value="F:translation elongation factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="CDD" id="cd04470">
        <property type="entry name" value="S1_EF-P_repeat_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="CDD" id="cd05794">
        <property type="entry name" value="S1_EF-P_repeat_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.30.30.30">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.50.140">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00141">
        <property type="entry name" value="EF_P"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015365">
        <property type="entry name" value="Elong-fact-P_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012340">
        <property type="entry name" value="NA-bd_OB-fold"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014722">
        <property type="entry name" value="Rib_L2_dom2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020599">
        <property type="entry name" value="Transl_elong_fac_P/YeiP"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013185">
        <property type="entry name" value="Transl_elong_KOW-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001059">
        <property type="entry name" value="Transl_elong_P/YeiP_cen"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013852">
        <property type="entry name" value="Transl_elong_P/YeiP_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011768">
        <property type="entry name" value="Transl_elongation_fac_P"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008991">
        <property type="entry name" value="Translation_prot_SH3-like_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30053">
        <property type="entry name" value="PTHR30053"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01132">
        <property type="entry name" value="EFP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08207">
        <property type="entry name" value="EFP_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF09285">
        <property type="entry name" value="Elong-fact-P_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF005901">
        <property type="entry name" value="EF-P"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM01185">
        <property type="entry name" value="EFP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00841">
        <property type="entry name" value="Elong-fact-P_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50104">
        <property type="entry name" value="SSF50104"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50249">
        <property type="entry name" value="SSF50249"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00038">
        <property type="entry name" value="efp"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01275">
        <property type="entry name" value="EFP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword id="KW-0963">Cytoplasm</keyword>
    <keyword id="KW-0251">Elongation factor</keyword>
    <keyword id="KW-0648">Protein biosynthesis</keyword>
    <keyword id="KW-1185">Reference proteome</keyword>
    <feature type="chain" id="PRO_1000096146" description="Elongation factor P">
        <location>
            <begin position="1"/>
            <end position="184"/>
        </location>
    </feature>
    <evidence type="ECO:0000255" key="1">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00141"/>
        </source>
    </evidence>
    <sequence length="184" mass="20549" checksum="2A9DBC5D1AE8DBB3" modified="2008-01-15" version="1">MKIAQEIRAGNVIMHGKDPMIVLKTEYARGGRGAATVRMKLKSLLGNMGTEVVFKADDKIDNVILDKKECTYSYFADPMYVWMDADFNQYEVEATNMGDAINYLEDGMEAEVVFYDGKAISCELPTSVEREITWTEPAVKGDTSGKVLKPAKIATGFEVPVPLFVSQGDKIEIDTRTGEYRKRV</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="35" xmlns="http://uniprot.org/uniprot">
    <accession>A9BW46</accession>
    <name>A9BW46_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_3224</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX35862.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012205062.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_3224"/>
    <dbReference type="PRIDE" id="A9BW46"/>
    <dbReference type="EnsemblBacteria" id="ABX35862">
        <property type="protein sequence ID" value="ABX35862"/>
        <property type="gene ID" value="Daci_3224"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_3224"/>
    <dbReference type="HOGENOM" id="CLU_1683689_0_0_4"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="coiled-coil region" evidence="1">
        <location>
            <begin position="31"/>
            <end position="79"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX35862.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="156" mass="17009" checksum="8B621F0BCC889BC6" modified="2008-01-15" version="1">MSKTETQSEALRLARLLESGCWLPVGHGDPIDEAAAELRRLDAEVRELKMTVQHESLCVEAAKERIEALDAENKALRERLEAPAAPVAEDARYAALWREHVEKLDALIAYCPTCSQGYIATAEMTRDQIIFECGKTAGRAEGKRGTEAAAKIGGSA</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="98" xmlns="http://uniprot.org/uniprot">
    <accession>A9BWB1</accession>
    <name>A9BWB1_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="3 7">Dihydrolipoyl dehydrogenase</fullName>
            <ecNumber evidence="3 7">1.8.1.4</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="10" type="ordered locus">Daci_3495</name>
    </gene>
    <organism evidence="10 11">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="10 11" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="11">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="11" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="11">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="1 7">
            <text>(R)-N(6)-dihydrolipoyl-L-lysyl-[protein] + NAD(+) = (R)-N(6)-lipoyl-L-lysyl-[protein] + H(+) + NADH</text>
            <dbReference type="Rhea" id="RHEA:15045"/>
            <dbReference type="Rhea" id="RHEA-COMP:10474"/>
            <dbReference type="Rhea" id="RHEA-COMP:10475"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:57540"/>
            <dbReference type="ChEBI" id="CHEBI:57945"/>
            <dbReference type="ChEBI" id="CHEBI:83099"/>
            <dbReference type="ChEBI" id="CHEBI:83100"/>
            <dbReference type="EC" id="1.8.1.4"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="5 7">
            <name>FAD</name>
            <dbReference type="ChEBI" id="CHEBI:57692"/>
        </cofactor>
        <text evidence="5 7">Binds 1 FAD per subunit.</text>
    </comment>
    <comment type="miscellaneous">
        <text evidence="7">The active site is a redox-active disulfide bond.</text>
    </comment>
    <comment type="similarity">
        <text evidence="2 7">Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family.</text>
    </comment>
    <dbReference type="EC" id="1.8.1.4" evidence="3 7"/>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX36131.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_3495"/>
    <dbReference type="PRIDE" id="A9BWB1"/>
    <dbReference type="EnsemblBacteria" id="ABX36131">
        <property type="protein sequence ID" value="ABX36131"/>
        <property type="gene ID" value="Daci_3495"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_3495"/>
    <dbReference type="eggNOG" id="COG1249">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_016755_0_1_4"/>
    <dbReference type="OMA" id="DAKYGEW"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004148">
        <property type="term" value="F:dihydrolipoyl dehydrogenase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0050660">
        <property type="term" value="F:flavin adenine dinucleotide binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0045454">
        <property type="term" value="P:cell redox homeostasis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.390.30">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.50.50.60">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036188">
        <property type="entry name" value="FAD/NAD-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023753">
        <property type="entry name" value="FAD/NAD-binding_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016156">
        <property type="entry name" value="FAD/NAD-linked_Rdtase_dimer_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006258">
        <property type="entry name" value="Lipoamide_DH"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001100">
        <property type="entry name" value="Pyr_nuc-diS_OxRdtase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004099">
        <property type="entry name" value="Pyr_nucl-diS_OxRdtase_dimer"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07992">
        <property type="entry name" value="Pyr_redox_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02852">
        <property type="entry name" value="Pyr_redox_dim"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF000350">
        <property type="entry name" value="Mercury_reductase_MerA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51905">
        <property type="entry name" value="SSF51905"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55424">
        <property type="entry name" value="SSF55424"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01350">
        <property type="entry name" value="lipoamide_DH"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5 7" id="KW-0274">FAD</keyword>
    <keyword evidence="7" id="KW-0285">Flavoprotein</keyword>
    <keyword evidence="5 7" id="KW-0520">NAD</keyword>
    <keyword evidence="5" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="7" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="7" id="KW-0676">Redox-active center</keyword>
    <keyword evidence="11" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Pyr_redox_2" evidence="9">
        <location>
            <begin position="14"/>
            <end position="346"/>
        </location>
    </feature>
    <feature type="domain" description="Pyr_redox_dim" evidence="8">
        <location>
            <begin position="365"/>
            <end position="474"/>
        </location>
    </feature>
    <feature type="active site" description="Proton acceptor" evidence="4">
        <location>
            <position position="463"/>
        </location>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <position position="67"/>
        </location>
        <ligand>
            <name>FAD</name>
            <dbReference type="ChEBI" id="CHEBI:57692"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <position position="131"/>
        </location>
        <ligand>
            <name>FAD</name>
            <dbReference type="ChEBI" id="CHEBI:57692"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <begin position="162"/>
            <end position="164"/>
        </location>
        <ligand>
            <name>FAD</name>
            <dbReference type="ChEBI" id="CHEBI:57692"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <begin position="199"/>
            <end position="206"/>
        </location>
        <ligand>
            <name>NAD(+)</name>
            <dbReference type="ChEBI" id="CHEBI:57540"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <position position="222"/>
        </location>
        <ligand>
            <name>NAD(+)</name>
            <dbReference type="ChEBI" id="CHEBI:57540"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <position position="290"/>
        </location>
        <ligand>
            <name>NAD(+)</name>
            <dbReference type="ChEBI" id="CHEBI:57540"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <position position="331"/>
        </location>
        <ligand>
            <name>FAD</name>
            <dbReference type="ChEBI" id="CHEBI:57692"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <begin position="337"/>
            <end position="340"/>
        </location>
        <ligand>
            <name>FAD</name>
            <dbReference type="ChEBI" id="CHEBI:57692"/>
        </ligand>
    </feature>
    <feature type="disulfide bond" description="Redox-active" evidence="6">
        <location>
            <begin position="58"/>
            <end position="63"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001492"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00007532"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00012608"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="PIRSR" id="PIRSR000350-2"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="PIRSR" id="PIRSR000350-3"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="PIRSR" id="PIRSR000350-4"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="RuleBase" id="RU003692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="Pfam" id="PF02852"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="9">
        <source>
            <dbReference type="Pfam" id="PF07992"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="EMBL" id="ABX36131.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="484" mass="51433" checksum="461EFAB0458A32C2" modified="2008-01-15" version="1">MHHRQEIPEMSKQFDVIVIGAGPGGYIAAIRAAQLGFNVACIDEWKNTAGGAAPGGTCTNVGCIPSKALLQSSEHFEHANLHFADHGISTGKVEMDVAKMIARKDAVVKQNNDGILYLFKKNKVTFFHGRGSFVKAVEGGYEIKVAGKEEEVLTGKQIVVATGSSARALPGVPFDEENILSNDGALRLGKAPKKLALIGAGVIGLEMGSVWRRLGTEVVVLEGMDKFLSAVDEQIAKEAKKAFDKQGLKIELGVKIGEIKSGKKGVSIAYTNAKGEAQALEADKLIISIGRTANTAGLNAEAVGLALDERGCVVVDDDCKTSLPGVWAVGDVVRGPMLAHKAEEEAVAVAERIAGQHGHVNFGTIPWVIYTSPEIAWVGRTEQQLKEQGVKYKAGTFPFLANGRARALGDTTGMVKFLADAETDEILGVHMVGPMVSELISEAVVAMEFKASSEDIARICHAHPSLSEATKEAALAVDKRTLNF</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="54" xmlns="http://uniprot.org/uniprot">
    <accession>A9BWC2</accession>
    <name>A9BWC2_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Nucleoside recognition domain protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Daci_3506</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="4" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX36142.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012205342.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_3506"/>
    <dbReference type="PRIDE" id="A9BWC2"/>
    <dbReference type="EnsemblBacteria" id="ABX36142">
        <property type="protein sequence ID" value="ABX36142"/>
        <property type="gene ID" value="Daci_3506"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_3506"/>
    <dbReference type="eggNOG" id="COG0700">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="eggNOG" id="COG2715">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_037414_0_0_4"/>
    <dbReference type="OMA" id="SNAQIMF"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011642">
        <property type="entry name" value="Gate_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011415">
        <property type="entry name" value="SpmA_SpmB"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07670">
        <property type="entry name" value="Gate"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF036542">
        <property type="entry name" value="SpmA_SpmB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="43"/>
            <end position="62"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="140"/>
            <end position="160"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="172"/>
            <end position="194"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="206"/>
            <end position="230"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="236"/>
            <end position="255"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="278"/>
            <end position="298"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="351"/>
            <end position="376"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="388"/>
            <end position="408"/>
        </location>
    </feature>
    <feature type="domain" description="Gate" evidence="2">
        <location>
            <begin position="52"/>
            <end position="157"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF07670"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ABX36142.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="409" mass="43226" checksum="C5385E422E8256AC" modified="2008-01-15" version="1">MLNALWLGFFLVAAVAALAQWLVGGQVGIFSAMVQALFAMARLSVEVMVLLFGTLTLWLGFLRIAEKAGVVEWLARVLGPLFARLMPEVPRGHPALGLITLNFAANGLGLDNAATPMGLKAMRSLQELNPRPDTATNAQILFLVLNASSLTLLPVTIFMYRMQQGAPDPTLVFLPILLATSASTLVGLLAVAAVQRLPLWSPVVLGYLLPLGLALAGFMAFLATLSAAALAQLSSLLGNLTLFALIVLFVTLGAWRKVAVYDSFIEGAKEGFDVAKGLLPYLVAMLCAVGVFRASGALEYALSGIRWVVDALGMDARFVDALPTALVKPFSGSAARAMLIETMQTQGVDSFAALVAATIQGSTETTFYVLAVYFGAVGIQRARHAVPCALIAELAGVMAAIVVCYKFFG</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="80" xmlns="http://uniprot.org/uniprot">
    <accession>A9BWC5</accession>
    <name>A9BWC5_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Transcriptional regulator, LysR family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Daci_3509</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="4" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the LysR transcriptional regulatory family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX36145.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012205345.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_3509"/>
    <dbReference type="PRIDE" id="A9BWC5"/>
    <dbReference type="EnsemblBacteria" id="ABX36145">
        <property type="protein sequence ID" value="ABX36145"/>
        <property type="gene ID" value="Daci_3509"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_3509"/>
    <dbReference type="eggNOG" id="COG0583">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_039613_6_4_4"/>
    <dbReference type="OMA" id="TCHFGQA"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003700">
        <property type="term" value="F:DNA-binding transcription factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd08451">
        <property type="entry name" value="PBP2_BudR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037410">
        <property type="entry name" value="BudR_PBP2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005119">
        <property type="entry name" value="LysR_subst-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000847">
        <property type="entry name" value="Tscrpt_reg_HTH_LysR"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036390">
        <property type="entry name" value="WH_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00126">
        <property type="entry name" value="HTH_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03466">
        <property type="entry name" value="LysR_substrate"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00039">
        <property type="entry name" value="HTHLYSR"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46785">
        <property type="entry name" value="SSF46785"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50931">
        <property type="entry name" value="HTH_LYSR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HTH lysR-type" evidence="2">
        <location>
            <begin position="19"/>
            <end position="76"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00009437"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS50931"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ABX36145.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="319" mass="34314" checksum="D309FD728A4331C3" modified="2008-01-15" version="1">MIANATIEVFPYLESIDVPELRQLRAFVAITEEGHITRAAERLGMQQPPLTRLLQGLEHELGVELVQRLPRGVRPTAAGLALLEESKALLERCDVLAEVVRRAARGETGRLAVGFTSSAALHPFVPGVLRMFRQQVPGVAVALEEAGTGELMDALLHERLDAAFVRSPLHGSQGLQAVPILEEPMLLALPAGHALARPLRRPVPLPQLASEDFVLYRRRVGQGLYDAILKACLEAGFSPRVVQEAPRMTATLSLVSAGLGLSIVPASMQRLRSDGIVYRALSQCPGLAAPLHLATRVGDASAVLRRFQDLVATAAVAES</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="82" xmlns="http://uniprot.org/uniprot">
    <accession>A9BWC6</accession>
    <name>A9BWC6_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Transcriptional regulator, LysR family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Daci_3510</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="4" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the LysR transcriptional regulatory family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX36146.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012205346.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_3510"/>
    <dbReference type="PRIDE" id="A9BWC6"/>
    <dbReference type="EnsemblBacteria" id="ABX36146">
        <property type="protein sequence ID" value="ABX36146"/>
        <property type="gene ID" value="Daci_3510"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_3510"/>
    <dbReference type="eggNOG" id="COG0583">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_039613_6_5_4"/>
    <dbReference type="OMA" id="FQRELVM"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003700">
        <property type="term" value="F:DNA-binding transcription factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005119">
        <property type="entry name" value="LysR_subst-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000847">
        <property type="entry name" value="Tscrpt_reg_HTH_LysR"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036390">
        <property type="entry name" value="WH_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00126">
        <property type="entry name" value="HTH_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03466">
        <property type="entry name" value="LysR_substrate"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46785">
        <property type="entry name" value="SSF46785"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50931">
        <property type="entry name" value="HTH_LYSR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HTH lysR-type" evidence="2">
        <location>
            <begin position="1"/>
            <end position="58"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00009437"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS50931"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ABX36146.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="305" mass="33488" checksum="3EAA5BE16848D391" modified="2008-01-15" version="1">METSYLHSFLLVVETGSMAEAARRLNITAAAVAQQIRILEREFDAPLLARAGRTVLPTPAGHRLSQSAPLLLRELANAKTHVNHEGADGELVIGTINTALHSLLPDILAGFVKKCPQTKVFLRSATTRELYQAVQQGELDAAVCLHPSFALAKTFDWTLLREEPLVLLVPHQLAHLDPHTLLRTQPLIRYDRSLGGGQMVERYLRAAQIAPQERFELSSLVAIAMMVERGLGVSLVPDTALNLPDGQGVVRLALPEESQSRRFGVMWLRSSARLPLIHRLVDCARTVVKQRGGPRAAARAANRTP</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="82" xmlns="http://uniprot.org/uniprot">
    <accession>A9BWR8</accession>
    <name>A9BWR8_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="12">Phosphomannomutase</fullName>
            <ecNumber evidence="12">5.4.2.8</ecNumber>
        </submittedName>
    </protein>
    <gene>
        <name evidence="12" type="ordered locus">Daci_3964</name>
    </gene>
    <organism evidence="12 13">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="12 13" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="13">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="13" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="13">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </cofactor>
    </comment>
    <comment type="similarity">
        <text evidence="2 7">Belongs to the phosphohexose mutase family.</text>
    </comment>
    <dbReference type="EC" id="5.4.2.8" evidence="12"/>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX36595.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012205789.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_3964"/>
    <dbReference type="PRIDE" id="A9BWR8"/>
    <dbReference type="EnsemblBacteria" id="ABX36595">
        <property type="protein sequence ID" value="ABX36595"/>
        <property type="gene ID" value="Daci_3964"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_3964"/>
    <dbReference type="eggNOG" id="COG1109">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_016950_9_1_4"/>
    <dbReference type="OMA" id="KCSQVMY"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000287">
        <property type="term" value="F:magnesium ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004615">
        <property type="term" value="F:phosphomannomutase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005975">
        <property type="term" value="P:carbohydrate metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005844">
        <property type="entry name" value="A-D-PHexomutase_a/b/a-I"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016055">
        <property type="entry name" value="A-D-PHexomutase_a/b/a-I/II/III"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005845">
        <property type="entry name" value="A-D-PHexomutase_a/b/a-II"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005846">
        <property type="entry name" value="A-D-PHexomutase_a/b/a-III"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005843">
        <property type="entry name" value="A-D-PHexomutase_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036900">
        <property type="entry name" value="A-D-PHexomutase_C_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016066">
        <property type="entry name" value="A-D-PHexomutase_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005841">
        <property type="entry name" value="Alpha-D-phosphohexomutase_SF"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02878">
        <property type="entry name" value="PGM_PMM_I"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02879">
        <property type="entry name" value="PGM_PMM_II"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02880">
        <property type="entry name" value="PGM_PMM_III"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00408">
        <property type="entry name" value="PGM_PMM_IV"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00509">
        <property type="entry name" value="PGMPMM"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53738">
        <property type="entry name" value="SSF53738"/>
        <property type="match status" value="3"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55957">
        <property type="entry name" value="SSF55957"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00710">
        <property type="entry name" value="PGM_PMM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="6 12" id="KW-0413">Isomerase</keyword>
    <keyword evidence="5 7" id="KW-0460">Magnesium</keyword>
    <keyword evidence="4 7" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="3" id="KW-0597">Phosphoprotein</keyword>
    <keyword evidence="13" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="PGM_PMM_I" evidence="9">
        <location>
            <begin position="7"/>
            <end position="135"/>
        </location>
    </feature>
    <feature type="domain" description="PGM_PMM_II" evidence="10">
        <location>
            <begin position="155"/>
            <end position="249"/>
        </location>
    </feature>
    <feature type="domain" description="PGM_PMM_III" evidence="11">
        <location>
            <begin position="254"/>
            <end position="363"/>
        </location>
    </feature>
    <feature type="domain" description="PGM_PMM_IV" evidence="8">
        <location>
            <begin position="368"/>
            <end position="449"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001946"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00010231"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022553"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022842"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023235"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="RuleBase" id="RU004326"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="Pfam" id="PF00408"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="9">
        <source>
            <dbReference type="Pfam" id="PF02878"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="10">
        <source>
            <dbReference type="Pfam" id="PF02879"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="11">
        <source>
            <dbReference type="Pfam" id="PF02880"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="EMBL" id="ABX36595.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="13">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="462" mass="49180" checksum="6BEE63B57E13026C" modified="2008-01-15" version="1">MQVASSIFKAYDIRGIVPSTLNEEVALGVGRAFGMAALAAGETVVAVGRDGRLSGPSLSAALIAGLTEVGIEVIDIGLATTPMLYYAASTLARSGIQVTGSHNPKDYNGFKMVLAGRAIYGEEIQALRRRVESDDWTITGTGSVRRADVQTDYQARIVGDVKLARPIKIVVDCGNGVAGASAPGIFRALGCEVIELFSEVDGEFPNHHPDPSKPENLRDVIEALRTSDAELGLAFDGDGDRLGIVTKDGQNIFPDRQMMLFAKDVLSRVPGGSIVYDVKCTQRLAPAIREAGGEPVMFKTGHSLVKARMKELDAPLGGEMSGHIFFKERWYGFDDGTYAGCRLLEIVSREADPSALLNALPTSFSTPELNVACAEGEPHRLAAELQALAAETFAAPAQVSTIDGLRVDWADGFGLIRASNTTPVLVLRFEGQTQEALSRIEAQMLALLERVKPGAQVGGAAH</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="51" xmlns="http://uniprot.org/uniprot">
    <accession>A9BX33</accession>
    <name>A9BX33_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Extracellular solute-binding protein family 3</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Daci_4387</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="4" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX37018.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_4387"/>
    <dbReference type="PRIDE" id="A9BX33"/>
    <dbReference type="EnsemblBacteria" id="ABX37018">
        <property type="protein sequence ID" value="ABX37018"/>
        <property type="gene ID" value="Daci_4387"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_4387"/>
    <dbReference type="eggNOG" id="COG0834">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_019602_18_4_4"/>
    <dbReference type="OMA" id="IFATYSI"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001638">
        <property type="entry name" value="Solute-binding_3/MltF_N"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00497">
        <property type="entry name" value="SBP_bac_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00062">
        <property type="entry name" value="PBPb"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <feature type="domain" description="PBPb" evidence="2">
        <location>
            <begin position="81"/>
            <end position="310"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022729"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="SMART" id="SM00062"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ABX37018.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="318" mass="33410" checksum="76CDDD71AE4EC7C3" modified="2008-01-15" version="1">MPLAAIPRFTSQTKQEDHMPIKSILKSTVVTLAIVGSGSLFAQGAPLNTAAFDALVAQGPVADAATIASSTWASKIKQTGTLRLGSTQTSNLFSLLNEKDGKIRGFDAGLAQLLTRYILGDASKYQFAQVTSSTREQVLINNQADMVIATYSITPARAEKISFAGPYYTSQAGVLVKASNKTVQSYSDLAGKKVATQAGSTGPAILAQHAPKAVVQEFQTHQEALDSLRQGRVDAYVTDYTLLLNTLSLGTGDARLAGAPFGAQDSYGIGLPKGSDGVAFINAFLKKIEADGTWAKLWTISIGQRTGSTAVPTPPALP</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="86" xmlns="http://uniprot.org/uniprot">
    <accession>A9BXD9</accession>
    <name>A9BXD9_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="5">Protein-methionine-sulfoxide reductase catalytic subunit MsrP</fullName>
            <ecNumber evidence="5">1.8.5.-</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="5" type="primary">msrP</name>
        <name evidence="7" type="ordered locus">Daci_5586</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="8" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="5">Part of the MsrPQ system that repairs oxidized periplasmic proteins containing methionine sulfoxide residues (Met-O), using respiratory chain electrons. Thus protects these proteins from oxidative-stress damage caused by reactive species of oxygen and chlorine generated by the host defense mechanisms. MsrPQ is essential for the maintenance of envelope integrity under bleach stress, rescuing a wide series of structurally unrelated periplasmic proteins from methionine oxidation. The catalytic subunit MsrP is non-stereospecific, being able to reduce both (R-) and (S-) diastereoisomers of methionine sulfoxide.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="5">
            <text>a quinone + H2O + L-methionyl-[protein] = a quinol + L-methionyl-(R)-S-oxide-[protein]</text>
            <dbReference type="Rhea" id="RHEA:51296"/>
            <dbReference type="Rhea" id="RHEA-COMP:12313"/>
            <dbReference type="Rhea" id="RHEA-COMP:12314"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:16044"/>
            <dbReference type="ChEBI" id="CHEBI:24646"/>
            <dbReference type="ChEBI" id="CHEBI:45764"/>
            <dbReference type="ChEBI" id="CHEBI:132124"/>
        </reaction>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="5">
            <text>a quinone + H2O + L-methionyl-[protein] = a quinol + L-methionyl-(S)-S-oxide-[protein]</text>
            <dbReference type="Rhea" id="RHEA:51292"/>
            <dbReference type="Rhea" id="RHEA-COMP:12313"/>
            <dbReference type="Rhea" id="RHEA-COMP:12315"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:16044"/>
            <dbReference type="ChEBI" id="CHEBI:24646"/>
            <dbReference type="ChEBI" id="CHEBI:44120"/>
            <dbReference type="ChEBI" id="CHEBI:132124"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="5">
            <name>Mo-molybdopterin</name>
            <dbReference type="ChEBI" id="CHEBI:71302"/>
        </cofactor>
        <text evidence="5">Binds 1 Mo-molybdopterin (Mo-MPT) cofactor per subunit.</text>
    </comment>
    <comment type="subunit">
        <text evidence="5">Heterodimer of a catalytic subunit (MsrP) and a heme-binding subunit (MsrQ).</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="5">Periplasm</location>
        </subcellularLocation>
        <text evidence="5">Is attached to the inner membrane when interacting with the MsrQ subunit.</text>
    </comment>
    <comment type="PTM">
        <text evidence="5">Predicted to be exported by the Tat system. The position of the signal peptide cleavage has not been experimentally proven.</text>
    </comment>
    <comment type="similarity">
        <text evidence="5">Belongs to the MsrP family.</text>
    </comment>
    <dbReference type="EC" id="1.8.5.-" evidence="5"/>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX38215.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012207384.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_5586"/>
    <dbReference type="PRIDE" id="A9BXD9"/>
    <dbReference type="EnsemblBacteria" id="ABX38215">
        <property type="protein sequence ID" value="ABX38215"/>
        <property type="gene ID" value="Daci_5586"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_5586"/>
    <dbReference type="eggNOG" id="COG2041">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_045520_0_0_4"/>
    <dbReference type="OMA" id="WPYTEGL"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0042597">
        <property type="term" value="C:periplasmic space"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0043546">
        <property type="term" value="F:molybdopterin cofactor binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016672">
        <property type="term" value="F:oxidoreductase activity, acting on a sulfur group of donors, quinone or similar compound as acceptor"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030091">
        <property type="term" value="P:protein repair"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.420.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01206">
        <property type="entry name" value="MsrP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR022867">
        <property type="entry name" value="MsrP"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000572">
        <property type="entry name" value="OxRdtase_Mopterin-bd_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036374">
        <property type="entry name" value="OxRdtase_Mopterin-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006311">
        <property type="entry name" value="TAT_signal"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00174">
        <property type="entry name" value="Oxidored_molyb"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56524">
        <property type="entry name" value="SSF56524"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51318">
        <property type="entry name" value="TAT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2 5" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="1 5" id="KW-0500">Molybdenum</keyword>
    <keyword evidence="4 5" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="5" id="KW-0574">Periplasm</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 5" id="KW-0732">Signal</keyword>
    <feature type="domain" description="Oxidored_molyb" evidence="6">
        <location>
            <begin position="106"/>
            <end position="260"/>
        </location>
    </feature>
    <feature type="region of interest" description="Molybdopterin binding" evidence="5">
        <location>
            <begin position="88"/>
            <end position="89"/>
        </location>
    </feature>
    <feature type="region of interest" description="Molybdopterin binding" evidence="5">
        <location>
            <begin position="242"/>
            <end position="244"/>
        </location>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <position position="85"/>
        </location>
        <ligand>
            <name>Mo-molybdopterin</name>
            <dbReference type="ChEBI" id="CHEBI:71302"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <position position="143"/>
        </location>
        <ligand>
            <name>Mo-molybdopterin</name>
            <dbReference type="ChEBI" id="CHEBI:71302"/>
        </ligand>
        <ligandPart>
            <name>Mo</name>
            <dbReference type="ChEBI" id="CHEBI:28685"/>
        </ligandPart>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <position position="178"/>
        </location>
        <ligand>
            <name>Mo-molybdopterin</name>
            <dbReference type="ChEBI" id="CHEBI:71302"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <position position="226"/>
        </location>
        <ligand>
            <name>Mo-molybdopterin</name>
            <dbReference type="ChEBI" id="CHEBI:71302"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <position position="231"/>
        </location>
        <ligand>
            <name>Mo-molybdopterin</name>
            <dbReference type="ChEBI" id="CHEBI:71302"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022505"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022729"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023002"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01206"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="Pfam" id="PF00174"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="ABX38215.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="326" mass="36416" checksum="26A1DED68A194D48" modified="2008-01-15" version="1">MLIRSHDNGFQHPKGSEITPRAGYLKRRAWLQYLAAGSAGAALPGWAAGVQRPGKLAALASVPSQVVGANTMDRVTAYADVSQYNNFYEFGLDKDDPAKNAHTLKTRPWTVKIEGLVQQPQTLDLDALLKLAPQEERIYRLRCVEGWSMVIPWVGYSLAELLRKVQPLGSAKYVEFVTLADKAQMPGLRSGVLDWPYTEGLRLDEAMHPLTLLAFGMYGEVLPNQNGAPVRLVVPWKYGFKSAKSIVAIRLTDKEPGTAWNKAARNEYGFYSNVNPDVPHPRWSQATERRIGEDGLFAKKRKTQLFNGYEAQVGQLYAGMDLKKFY</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="81" xmlns="http://uniprot.org/uniprot">
    <accession>A9BY08</accession>
    <name>A9BY08_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">Type II secretion system protein E</fullName>
            <shortName evidence="3">T2SS protein E</shortName>
        </recommendedName>
        <alternativeName>
            <fullName evidence="3">Type II traffic warden ATPase</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="5" type="ordered locus">Daci_1299</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="6" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="3">ATPase component of the type II secretion system required for the energy-dependent secretion of extracellular factors such as proteases and toxins from the periplasm. Acts as a molecular motor to provide the energy that is required for assembly of the pseudopilus and the extrusion of substrates generated in the cytoplasm.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="3">Cell inner membrane</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="1 3">Belongs to the GSP E family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX33943.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_1299"/>
    <dbReference type="PRIDE" id="A9BY08"/>
    <dbReference type="EnsemblBacteria" id="ABX33943">
        <property type="protein sequence ID" value="ABX33943"/>
        <property type="gene ID" value="Daci_1299"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_1299"/>
    <dbReference type="eggNOG" id="COG2804">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_013446_10_6_4"/>
    <dbReference type="OMA" id="RSRIDGM"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015627">
        <property type="term" value="C:type II protein secretion system complex"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015628">
        <property type="term" value="P:protein secretion by the type II secretion system"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.300.160">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003593">
        <property type="entry name" value="AAA+_ATPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001482">
        <property type="entry name" value="T2SS/T4SS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037257">
        <property type="entry name" value="T2SS_E_N_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013369">
        <property type="entry name" value="T2SS_GspE"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007831">
        <property type="entry name" value="T2SS_GspE_N"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00437">
        <property type="entry name" value="T2SSE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF05157">
        <property type="entry name" value="T2SSE_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00382">
        <property type="entry name" value="AAA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF160246">
        <property type="entry name" value="SSF160246"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR02533">
        <property type="entry name" value="type_II_gspE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00662">
        <property type="entry name" value="T2SP_E"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="3" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="3" id="KW-0653">Protein transport</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 3" id="KW-0813">Transport</keyword>
    <feature type="domain" description="T2SP_E" evidence="4">
        <location>
            <begin position="389"/>
            <end position="403"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00006611"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022448"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="RuleBase" id="RU366070"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="PROSITE" id="PS00662"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="ABX33943.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="575" mass="62243" checksum="B1F686EFE0609868" modified="2008-01-15" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="50" xmlns="http://uniprot.org/uniprot">
    <accession>A9BY25</accession>
    <name>A9BY25_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Methyltransferase type 12</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Daci_1316</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="2" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX33960.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012203246.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_1316"/>
    <dbReference type="PRIDE" id="A9BY25"/>
    <dbReference type="EnsemblBacteria" id="ABX33960">
        <property type="protein sequence ID" value="ABX33960"/>
        <property type="gene ID" value="Daci_1316"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_1316"/>
    <dbReference type="eggNOG" id="COG0500">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_972419_0_0_4"/>
    <dbReference type="OMA" id="GCGDGIT"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008168">
        <property type="term" value="F:methyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0032259">
        <property type="term" value="P:methylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.150">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029063">
        <property type="entry name" value="SAM-dependent_MTases_sf"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53335">
        <property type="entry name" value="SSF53335"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0489">Methyltransferase</keyword>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0808">Transferase</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ABX33960.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="293" mass="33804" checksum="4B51B20BB23F0BB6" modified="2008-01-15" version="1">MADRLSLWGRRWQERLFGLAPWDAGKITDEWFRAHFDYAADVVHSWLGQELDMSKARLLNFGCGDGITDLALVLRHGATRIHGIDIRQEYTKLPRIAREQLGMSRVPSALSFETIVPNEPLATRHAGYDGMLTWSTFEHVQRDKVLPILADLHACLRPGGVFFLQIEPLFHSPWGSHLRRYDDVPWHHLMASEEELWRIIEAHDGPLDASEVDFGFSDFGVDGYKRFVFREYQALNRLTADELVELTKQAGFELLRQERRQVDLPIPAPLKGRYQDDWLLNNEIMLLLGKSTT</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="94" xmlns="http://uniprot.org/uniprot">
    <accession>A9BY81</accession>
    <name>A9BY81_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">Histidine kinase</fullName>
            <ecNumber evidence="2">2.7.13.3</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="11" type="ordered locus">Daci_1576</name>
    </gene>
    <organism evidence="11 12">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="11 12" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="12">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="12" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="12">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>ATP + protein L-histidine = ADP + protein N-phospho-L-histidine.</text>
            <dbReference type="EC" id="2.7.13.3"/>
        </reaction>
    </comment>
    <dbReference type="EC" id="2.7.13.3" evidence="2"/>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX34220.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_1576"/>
    <dbReference type="PRIDE" id="A9BY81"/>
    <dbReference type="EnsemblBacteria" id="ABX34220">
        <property type="protein sequence ID" value="ABX34220"/>
        <property type="gene ID" value="Daci_1576"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_1576"/>
    <dbReference type="eggNOG" id="COG0643">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="eggNOG" id="COG0745">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="eggNOG" id="COG0810">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="eggNOG" id="COG2198">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_000650_0_1_4"/>
    <dbReference type="OMA" id="EMDRHSQ"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000155">
        <property type="term" value="F:phosphorelay sensor kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006935">
        <property type="term" value="P:chemotaxis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd00088">
        <property type="entry name" value="HPT"/>
        <property type="match status" value="3"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.120.160">
        <property type="match status" value="3"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.565.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004105">
        <property type="entry name" value="CheA-like_dim"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036061">
        <property type="entry name" value="CheW-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002545">
        <property type="entry name" value="CheW-lke_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011006">
        <property type="entry name" value="CheY-like_superfamily"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003594">
        <property type="entry name" value="HATPase_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036890">
        <property type="entry name" value="HATPase_C_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005467">
        <property type="entry name" value="His_kinase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036641">
        <property type="entry name" value="HPT_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004358">
        <property type="entry name" value="Sig_transdc_His_kin-like_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008207">
        <property type="entry name" value="Sig_transdc_His_kin_Hpt_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001789">
        <property type="entry name" value="Sig_transdc_resp-reg_receiver"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01584">
        <property type="entry name" value="CheW"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02518">
        <property type="entry name" value="HATPase_c"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01627">
        <property type="entry name" value="Hpt"/>
        <property type="match status" value="3"/>
    </dbReference>
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        <property type="entry name" value="BCTRLSENSOR"/>
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        <property type="match status" value="1"/>
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        <property type="match status" value="5"/>
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        <property type="match status" value="1"/>
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        <location>
            <begin position="730"/>
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            <begin position="1336"/>
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        <location>
            <begin position="1618"/>
            <end position="1818"/>
        </location>
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            <begin position="1820"/>
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        <location>
            <begin position="1988"/>
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        </location>
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        <location>
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        <source>
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        <source>
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        </source>
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        <source>
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        <source>
            <dbReference type="PROSITE" id="PS50894"/>
        </source>
    </evidence>
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        <source>
            <dbReference type="EMBL" id="ABX34220.1"/>
        </source>
    </evidence>
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        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="2137" mass="229788" checksum="B69A5D99D911AE64" modified="2008-01-15" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="43" xmlns="http://uniprot.org/uniprot">
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                <person name="Fischer K."/>
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            <dbReference type="PubMed" id="15240283"/>
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        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
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            <strain evidence="2">DSM 14801 / SPH-1</strain>
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            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
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            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
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    </dbReference>
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        <source>
            <dbReference type="EMBL" id="ABX34287.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="204" mass="22456" checksum="5DC9C08CDF583888" modified="2008-01-15" version="1">MAHLDAYLGPCPGFGWQGGPEFSTQIVDLASGRERRNALWAQARHRFEAPFLNIKRDAYRRIKQMHLTCQGRLHAFRFRDELDHAAHDDVFAVGDGVATVFQLAKVSTIDGVSYTRNCFAIKSASVLAGDDPADPVIDMLRGTVTFAAPPAVGVALAWSGEFDVWVRFDQDYLPFSLDNANGRGDKFINGSVTLIEVPPPPPEP</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="55" xmlns="http://uniprot.org/uniprot">
    <accession>A9BYG5</accession>
    <name>A9BYG5_DELAS</name>
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        <submittedName>
            <fullName evidence="4">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ordered locus">Daci_1868</name>
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        <lineage>
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    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
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                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
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            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="5" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
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            <location evidence="1">Periplasm</location>
        </subcellularLocation>
    </comment>
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        <text evidence="2">Belongs to the UPF0065 (bug) family.</text>
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        <property type="gene ID" value="Daci_1868"/>
    </dbReference>
    <dbReference type="GeneID" id="60686295"/>
    <dbReference type="KEGG" id="dac:Daci_1868"/>
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        <property type="taxonomic scope" value="Bacteria"/>
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        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0042597">
        <property type="term" value="C:periplasmic space"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
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        <property type="match status" value="1"/>
    </dbReference>
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        <property type="entry name" value="BUG"/>
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        <property type="entry name" value="Bug_dom1"/>
    </dbReference>
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        <property type="entry name" value="TAT_signal"/>
    </dbReference>
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        <property type="entry name" value="PTHR42928"/>
        <property type="match status" value="1"/>
    </dbReference>
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    </dbReference>
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        <property type="match status" value="1"/>
    </dbReference>
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        <property type="entry name" value="TAT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
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        <location>
            <begin position="1"/>
            <end position="26"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5002735203" evidence="3">
        <location>
            <begin position="27"/>
            <end position="330"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004418"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00006987"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="ABX34508.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="330" mass="34845" checksum="B358C1B26F40334D" modified="2008-01-15" version="1">MNVKRRFLTAAAAGLCLSAVMPAAHAQAPEANWPSKPIRWIVPFPPGGAMDAIARTLGEKAGRTLGQPFVIENRPGAGGNIGADFVAKQPGDGYTLMITSIGMATNKPLYRKLSYDPIKDFAPVGVLAVVPNILVTNSTQPNVKSVADVVAAAKASPGKLTYASAGNGTSIHLAGEVFNSLAGVDILHIPYKGSGPAVSDLLGGQVNYMFDSITSARPHIQSGKLRALAVTTAKRSSSMPDVPTMEEAGIKGYEVSPWFAVFMPASTPPAIVKKLNQVFVAEMKQPDVLERFKAIGAEVVGSTPEEAAKHLQAESVRWTKVITERNISMD</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="64" xmlns="http://uniprot.org/uniprot">
    <accession>A9BZ89</accession>
    <name>A9BZ89_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Extracellular ligand-binding receptor</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Daci_2551</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
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    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
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                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="4" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX35189.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012204468.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_2551"/>
    <dbReference type="PRIDE" id="A9BZ89"/>
    <dbReference type="EnsemblBacteria" id="ABX35189">
        <property type="protein sequence ID" value="ABX35189"/>
        <property type="gene ID" value="Daci_2551"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_2551"/>
    <dbReference type="eggNOG" id="COG0683">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_027128_1_5_4"/>
    <dbReference type="OMA" id="GPFTTRY"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR028081">
        <property type="entry name" value="Leu-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR028082">
        <property type="entry name" value="Peripla_BP_I"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006311">
        <property type="entry name" value="TAT_signal"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13458">
        <property type="entry name" value="Peripla_BP_6"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53822">
        <property type="entry name" value="SSF53822"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51318">
        <property type="entry name" value="TAT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-0675">Receptor</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="1">
        <location>
            <begin position="1"/>
            <end position="28"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5002735986" evidence="1">
        <location>
            <begin position="29"/>
            <end position="400"/>
        </location>
    </feature>
    <feature type="domain" description="Peripla_BP_6" evidence="2">
        <location>
            <begin position="32"/>
            <end position="370"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF13458"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ABX35189.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="400" mass="43160" checksum="B2461AFFD0DD61F3" modified="2008-01-15" version="1">MQRRPFLHSALALSAMATMAAAAPAAMAQQGEIRIAHVYSKTGALEAYGKQTQAGLLMGLEYATGGSMAVNGKKLVVIEKDDQGKPDLGKSLLATAYSDDKADLAVGPTSSGVALAMLPVAEEYKKILLVEPAVADSITGDKWNKYIFRTGRNSSQDAISNAVAIDKAGVTIATLAQDNAFGRDGVKAFKDAIKKGKLAHEEYLPAATTDFTAGAQRLIDKLKDQPGRKIIWIVWAGAGNPFKIADMDLKRYGIEIATGGNILPAMAAYKNLPGMEGATYYYYGIPKNPVNEALVSMHYKQYKTPPDFFTAGGFSAAMAIVTALKKTGGDTKTNTLIKAMEGMSFDTPKGQMTFRKEDHQALQSMYHFKIRVDPALAWGVPELVREIKPEEMQVPIRNGR</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="76" xmlns="http://uniprot.org/uniprot">
    <accession>A9BZB7</accession>
    <name>A9BZB7_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Histone family protein DNA-binding protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ordered locus">Daci_2879</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="5" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1 3">Belongs to the bacterial histone-like protein family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX35517.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012204727.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_2879"/>
    <dbReference type="PRIDE" id="A9BZB7"/>
    <dbReference type="EnsemblBacteria" id="ABX35517">
        <property type="protein sequence ID" value="ABX35517"/>
        <property type="gene ID" value="Daci_2879"/>
    </dbReference>
    <dbReference type="GeneID" id="60691068"/>
    <dbReference type="KEGG" id="dac:Daci_2879"/>
    <dbReference type="eggNOG" id="COG0776">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_105066_3_1_4"/>
    <dbReference type="OMA" id="PAHEGIN"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030527">
        <property type="term" value="F:structural constituent of chromatin"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="4.10.520.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000119">
        <property type="entry name" value="Hist_DNA-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020816">
        <property type="entry name" value="Histone-like_DNA-bd_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010992">
        <property type="entry name" value="IHF-like_DNA-bd_dom_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33175">
        <property type="entry name" value="PTHR33175"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00216">
        <property type="entry name" value="Bac_DNA_binding"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR01727">
        <property type="entry name" value="DNABINDINGHU"/>
    </dbReference>
    <dbReference type="SMART" id="SM00411">
        <property type="entry name" value="BHL"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47729">
        <property type="entry name" value="SSF47729"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00045">
        <property type="entry name" value="HISTONE_LIKE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2 4" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00010529"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="RuleBase" id="RU003939"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="ABX35517.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="90" mass="9501" checksum="7B547A2A624BBEDD" modified="2008-01-15" version="1">MNKTELIEHIANNADISKAAAARALDSTIEAVKKTLKKGGTVSLVGFGTFAVGKRAARTGRNPRTGETIKIKAAKVPKFRPGKALKDALN</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="51" xmlns="http://uniprot.org/uniprot">
    <accession>A9BZC0</accession>
    <name>A9BZC0_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Type IV pilus modification protein PilV</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_2882</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX35520.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012204730.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_2882"/>
    <dbReference type="PRIDE" id="A9BZC0"/>
    <dbReference type="EnsemblBacteria" id="ABX35520">
        <property type="protein sequence ID" value="ABX35520"/>
        <property type="gene ID" value="Daci_2882"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_2882"/>
    <dbReference type="eggNOG" id="COG4967">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_103234_3_0_4"/>
    <dbReference type="OMA" id="RAIEYTV"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012902">
        <property type="entry name" value="N_methyl_site"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013362">
        <property type="entry name" value="Pilus_4_PilV"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07963">
        <property type="entry name" value="N_methyl"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR02523">
        <property type="entry name" value="type_IV_pilV"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="21"/>
            <end position="41"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX35520.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="181" mass="19524" checksum="CC9185156653AC0B" modified="2008-01-15" version="1">MRVQRVCNMSIPFSSRRQRGAGLIEVLVAVLLVAVGLLGAVRIHVRAIEYTVDTERRQMASMLASELLETLRGDTATVLDAKGSPVAELGGYQKLEGAAMPAAPAACQPLPQPREQRLACWGDRARKLVPDLTADRIDSSFAVSADADGLVSVTVAWPVKKGQCLDGSDNEFCTFTLRSRL</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="82" xmlns="http://uniprot.org/uniprot">
    <accession>A9BZJ7</accession>
    <name>A9BZJ7_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Alcohol dehydrogenase zinc-binding domain protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ordered locus">Daci_2959</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="5" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="2">
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </cofactor>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the zinc-containing alcohol dehydrogenase family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX35597.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_2959"/>
    <dbReference type="PRIDE" id="A9BZJ7"/>
    <dbReference type="EnsemblBacteria" id="ABX35597">
        <property type="protein sequence ID" value="ABX35597"/>
        <property type="gene ID" value="Daci_2959"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_2959"/>
    <dbReference type="eggNOG" id="COG1063">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_026673_11_0_4"/>
    <dbReference type="OMA" id="VGKNEMT"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016616">
        <property type="term" value="F:oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008270">
        <property type="term" value="F:zinc ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013149">
        <property type="entry name" value="ADH-like_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013154">
        <property type="entry name" value="ADH_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002328">
        <property type="entry name" value="ADH_Zn_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011032">
        <property type="entry name" value="GroES-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036291">
        <property type="entry name" value="NAD(P)-bd_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020843">
        <property type="entry name" value="PKS_ER"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08240">
        <property type="entry name" value="ADH_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00107">
        <property type="entry name" value="ADH_zinc_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00829">
        <property type="entry name" value="PKS_ER"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50129">
        <property type="entry name" value="SSF50129"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51735">
        <property type="entry name" value="SSF51735"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00059">
        <property type="entry name" value="ADH_ZINC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="1" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0862">Zinc</keyword>
    <feature type="domain" description="PKS_ER" evidence="3">
        <location>
            <begin position="28"/>
            <end position="368"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00023002"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="RuleBase" id="RU361277"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="SMART" id="SM00829"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="ABX35597.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="373" mass="39898" checksum="FED5FE8F9958AF7A" modified="2008-01-15" version="1">MGRLCRPPTQPCKTESSIMKAARFYDRGDIRIEDIPEPVVEPGTVGIEVAWCGICGTDLHEFMEGPIFIPPCGHPHPISGESAPITMGHEFSGVVYAVGAGVDDIKVGQHVVVEPYIVADDVPTGPGDHYHLSKDMNFIGLGGRGGGLSERIAVKRRWVHPISNAIPLDQAALIEPLSVGHHAYTRSGAKAGDVALVGGAGPIGLLLSAILKAKGLTVVITELSAKRKQKARESGVADHILDPSEVDVVAEVMKLTGGKGVDVSFECSSVNKVLDTLVAVTKATGVVVIVSIWSHPATINVHSVVMKELDVRGTIAYCNDHQETIKLVEEGKINLEPFITQRIQLDDLVAQGFDTLIHNNESAVKIIVQPRLR</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="99" xmlns="http://uniprot.org/uniprot">
    <accession>A9BZL3</accession>
    <name>A9BZL3_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="14">ABC transporter related</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="14" type="ordered locus">Daci_3283</name>
    </gene>
    <organism evidence="14 15">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="14 15" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="15">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="15" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="15">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the ABC-4 integral membrane protein family. LolC/E subfamily.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX35921.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_3283"/>
    <dbReference type="PRIDE" id="A9BZL3"/>
    <dbReference type="EnsemblBacteria" id="ABX35921">
        <property type="protein sequence ID" value="ABX35921"/>
        <property type="gene ID" value="Daci_3283"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_3283"/>
    <dbReference type="eggNOG" id="COG0577">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="eggNOG" id="COG1136">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_000604_78_2_4"/>
    <dbReference type="OMA" id="VVILITH"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005524">
        <property type="term" value="F:ATP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046677">
        <property type="term" value="P:response to antibiotic"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd03255">
        <property type="entry name" value="ABC_MJ0796_LolCDE_FtsE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003593">
        <property type="entry name" value="AAA+_ATPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003838">
        <property type="entry name" value="ABC3_permease_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003439">
        <property type="entry name" value="ABC_transporter-like_ATP-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017871">
        <property type="entry name" value="ABC_transporter-like_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017911">
        <property type="entry name" value="MacB_ATP-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025857">
        <property type="entry name" value="MacB_PCD"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00005">
        <property type="entry name" value="ABC_tran"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02687">
        <property type="entry name" value="FtsX"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12704">
        <property type="entry name" value="MacB_PCD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00382">
        <property type="entry name" value="AAA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00211">
        <property type="entry name" value="ABC_TRANSPORTER_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50893">
        <property type="entry name" value="ABC_TRANSPORTER_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="10" id="KW-0046">Antibiotic resistance</keyword>
    <keyword evidence="6 11" id="KW-0067">ATP-binding</keyword>
    <keyword evidence="3" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="9 12" id="KW-0472">Membrane</keyword>
    <keyword evidence="5 11" id="KW-0547">Nucleotide-binding</keyword>
    <keyword evidence="15" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="7" id="KW-1278">Translocase</keyword>
    <keyword evidence="4 12" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="8 12" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="12">
        <location>
            <begin position="293"/>
            <end position="313"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="12">
        <location>
            <begin position="541"/>
            <end position="565"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="12">
        <location>
            <begin position="596"/>
            <end position="621"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="12">
        <location>
            <begin position="627"/>
            <end position="649"/>
        </location>
    </feature>
    <feature type="domain" description="ABC transporter" evidence="13">
        <location>
            <begin position="18"/>
            <end position="259"/>
        </location>
    </feature>
    <feature type="binding site" evidence="11">
        <location>
            <begin position="57"/>
            <end position="64"/>
        </location>
        <ligand>
            <name>ATP</name>
            <dbReference type="ChEBI" id="CHEBI:30616"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00005236"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022741"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00022840"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="ARBA" id="ARBA00022967"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="10">
        <source>
            <dbReference type="ARBA" id="ARBA00023251"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="11">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00434"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="12">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="13">
        <source>
            <dbReference type="PROSITE" id="PS50893"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="14">
        <source>
            <dbReference type="EMBL" id="ABX35921.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="15">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="666" mass="71017" checksum="05284BB0071FABBA" modified="2008-01-15" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="68" xmlns="http://uniprot.org/uniprot">
    <accession>A9BZU7</accession>
    <name>A9BZU7_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Efflux transporter, RND family, MFP subunit</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ordered locus">Daci_3367</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="6" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX36005.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_3367"/>
    <dbReference type="PRIDE" id="A9BZU7"/>
    <dbReference type="EnsemblBacteria" id="ABX36005">
        <property type="protein sequence ID" value="ABX36005"/>
        <property type="gene ID" value="Daci_3367"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_3367"/>
    <dbReference type="eggNOG" id="COG0845">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_018816_2_1_4"/>
    <dbReference type="OMA" id="RHFEEGQ"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016020">
        <property type="term" value="C:membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0022857">
        <property type="term" value="F:transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043602">
        <property type="entry name" value="CusB_dom_1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR032317">
        <property type="entry name" value="HlyD_D23"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006143">
        <property type="entry name" value="RND_pump_MFP"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00529">
        <property type="entry name" value="CusB_dom_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF16576">
        <property type="entry name" value="HlyD_D23"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01730">
        <property type="entry name" value="RND_mfp"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="CusB_dom_1" evidence="3">
        <location>
            <begin position="105"/>
            <end position="419"/>
        </location>
    </feature>
    <feature type="domain" description="HlyD_D23" evidence="4">
        <location>
            <begin position="122"/>
            <end position="351"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="35"/>
            <end position="56"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="442"/>
            <end position="480"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00009477"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF00529"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="Pfam" id="PF16576"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="ABX36005.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="480" mass="49872" checksum="FA64A7BC76810E17" modified="2008-01-15" version="1">MPSALQTRNMGTAQSCDAPNDFAAPMIFDVPFSPSPRLAAPSDSQPGAGHVQVSASPAGGRRIGTAVLCALALAASLAACSKKDAAPAATAKAAPEVGVVTLQKQSQQLDATLPGRTRASLTAEVRPQVSGIVQKRLFTEGALVRQGQQLYQIDAASLRATEASAQAALAKSEASARTLEATARRNAELVKIDAISQQAFEESQAAAAQSRSDVAVAKANLETARINLKYSRIEAPISGRISLSTVTPGALVTANQTEALTSIVQLDPMYVDFTQSTSELLQLKRDWDAGRFQKVEGDKVAVRIRLDDGTDYSHQGKLQFAGVIVNATTGSVTLRAVVPNPQGVLMPGMYVQALLPTGLAPEALLVPQQSVTRDLTGKASVLVAKADDVIERRPVNIDRAVGNMWLLQDGLSAGERVVVDGFQRIKPGDKVRAVEVDLRAKAQARKGKPADGPAAPGAADKAPATAPAPAPAAAPAPAAG</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="61" xmlns="http://uniprot.org/uniprot">
    <accession>A9C0D5</accession>
    <name>A9C0D5_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Methyltransferase type 11</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_4070</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX36701.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012205895.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_4070"/>
    <dbReference type="PRIDE" id="A9C0D5"/>
    <dbReference type="EnsemblBacteria" id="ABX36701">
        <property type="protein sequence ID" value="ABX36701"/>
        <property type="gene ID" value="Daci_4070"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_4070"/>
    <dbReference type="eggNOG" id="COG2227">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_088936_0_0_4"/>
    <dbReference type="OMA" id="PVWRECA"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008168">
        <property type="term" value="F:methyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0032259">
        <property type="term" value="P:methylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.150">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013216">
        <property type="entry name" value="Methyltransf_11"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029063">
        <property type="entry name" value="SAM-dependent_MTases_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF08241">
        <property type="entry name" value="Methyltransf_11"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53335">
        <property type="entry name" value="SSF53335"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0489">Methyltransferase</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Methyltransf_11" evidence="1">
        <location>
            <begin position="65"/>
            <end position="160"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF08241"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX36701.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="262" mass="28646" checksum="A13366E351E0237D" modified="2008-01-15" version="1">MTEPIDILAHNTAAWNLQAAKDCDWSRPVDSAEIARARAGIWQARLTPGPLPAGWLDDVRGLRILCLASGGGQQGPILAAAGAQVTVFDASAGQLAQDRYVAEREGLALTCVQGDMRDLGVFADAGFDVIFHPISNLYVPDVRPVWRECARVLAKGGRLLSSFWNPVVFVEDRDPALREQGLMRPAWRLPYSDVVDLPPAAIDAKRERNEALVFGHTLADQIGGQLDAGLVLTGFHEDWQSHARFVIEKFVPTFIATRSVKL</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="47" xmlns="http://uniprot.org/uniprot">
    <accession>A9C0E8</accession>
    <name>A9C0E8_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Daci_4083</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="2" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX36714.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012205906.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_4083"/>
    <dbReference type="PRIDE" id="A9C0E8"/>
    <dbReference type="EnsemblBacteria" id="ABX36714">
        <property type="protein sequence ID" value="ABX36714"/>
        <property type="gene ID" value="Daci_4083"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_4083"/>
    <dbReference type="eggNOG" id="COG5448">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_114534_0_0_4"/>
    <dbReference type="OMA" id="DQRIGTG"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011740">
        <property type="entry name" value="DUF2460"/>
    </dbReference>
    <dbReference type="Pfam" id="PF09343">
        <property type="entry name" value="DUF2460"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ABX36714.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="195" mass="21945" checksum="67E21786A80E1314" modified="2008-01-15" version="1">MSFIDVQINAKTNIGFAGGPEWRTLVVQMASGRNRRRQEWSMPHHKYTADYTTLRPQDQNDILAAFIAAKGQMHTFAMRDWNDYRARGEVIGQGDGTTTPVQLVKTYAFGPASYVRPITLPVERSVRVYQGGVLVASTVDRLTGLVTPDAPWEDGVEITADFDFNVRVRFASDYFPFTRDSNVSAQTTVELVEEF</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="60" xmlns="http://uniprot.org/uniprot">
    <accession>A9C0G7</accession>
    <name>A9C0G7_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Putative anti-sigma regulatory factor, serine/threonine protein kinase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_4409</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX37040.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_4409"/>
    <dbReference type="PRIDE" id="A9C0G7"/>
    <dbReference type="EnsemblBacteria" id="ABX37040">
        <property type="protein sequence ID" value="ABX37040"/>
        <property type="gene ID" value="Daci_4409"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_4409"/>
    <dbReference type="eggNOG" id="COG2172">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_129722_1_0_4"/>
    <dbReference type="OMA" id="DQSCVKI"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004674">
        <property type="term" value="F:protein serine/threonine kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016310">
        <property type="term" value="P:phosphorylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.565.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003594">
        <property type="entry name" value="HATPase_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036890">
        <property type="entry name" value="HATPase_C_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02518">
        <property type="entry name" value="HATPase_c"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00387">
        <property type="entry name" value="HATPase_c"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55874">
        <property type="entry name" value="SSF55874"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0418">Kinase</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0723">Serine/threonine-protein kinase</keyword>
    <keyword evidence="2" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="HATPase_c" evidence="1">
        <location>
            <begin position="36"/>
            <end position="134"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="SMART" id="SM00387"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX37040.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="134" mass="14820" checksum="D77589D896785798" modified="2008-01-15" version="1">MEHDRSGQMPLQNEQQIVATRQTVRSLCQMLKFSLVDQTKMITAASELSRNTLIHGKGGHMNWAIIEVNGKQALQLIFEDTGPGIKDLKMAMTDGFTTGMGMGLGLPGSKRLVNDFKIETELGQGTRVSITKWK</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="72" xmlns="http://uniprot.org/uniprot">
    <accession>A9C0H6</accession>
    <name>A9C0H6_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Nitrilotriacetate monooxygenase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ordered locus">Daci_4419</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="5" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="2">
            <name>FMN</name>
            <dbReference type="ChEBI" id="CHEBI:58210"/>
        </cofactor>
    </comment>
    <comment type="similarity">
        <text evidence="1">Belongs to the NtaA/SnaA/DszA monooxygenase family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX37049.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012206221.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_4419"/>
    <dbReference type="PRIDE" id="A9C0H6"/>
    <dbReference type="EnsemblBacteria" id="ABX37049">
        <property type="protein sequence ID" value="ABX37049"/>
        <property type="gene ID" value="Daci_4419"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_4419"/>
    <dbReference type="eggNOG" id="COG2141">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_022256_1_2_4"/>
    <dbReference type="OMA" id="GRGHHIV"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004497">
        <property type="term" value="F:monooxygenase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016705">
        <property type="term" value="F:oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd01095">
        <property type="entry name" value="Nitrilotriacetate_monoxgenase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.20.20.30">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011251">
        <property type="entry name" value="Luciferase-like_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036661">
        <property type="entry name" value="Luciferase-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016215">
        <property type="entry name" value="NTA_MOA"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00296">
        <property type="entry name" value="Bac_luciferase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF000337">
        <property type="entry name" value="NTA_MOA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51679">
        <property type="entry name" value="SSF51679"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR03860">
        <property type="entry name" value="FMN_nitrolo"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2" id="KW-0285">Flavoprotein</keyword>
    <keyword evidence="2" id="KW-0288">FMN</keyword>
    <keyword evidence="4" id="KW-0503">Monooxygenase</keyword>
    <keyword evidence="4" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Bac_luciferase" evidence="3">
        <location>
            <begin position="20"/>
            <end position="385"/>
        </location>
    </feature>
    <feature type="binding site" evidence="2">
        <location>
            <position position="56"/>
        </location>
        <ligand>
            <name>FMN</name>
            <dbReference type="ChEBI" id="CHEBI:58210"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="2">
        <location>
            <position position="93"/>
        </location>
        <ligand>
            <name>FMN</name>
            <dbReference type="ChEBI" id="CHEBI:58210"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="2">
        <location>
            <begin position="143"/>
            <end position="147"/>
        </location>
        <ligand>
            <name>FMN</name>
            <dbReference type="ChEBI" id="CHEBI:58210"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="2">
        <location>
            <begin position="215"/>
            <end position="218"/>
        </location>
        <ligand>
            <name>FMN</name>
            <dbReference type="ChEBI" id="CHEBI:58210"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00033748"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="PIRSR" id="PIRSR000337-1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF00296"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="ABX37049.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="455" mass="49382" checksum="871C8D752DE57FCD" modified="2008-01-15" version="1">MSRQLHLNLFLMTRGHHEGAWRHPGANRKALTDLELYVDAARIAEAAKFDAVFLADSLVGPENGQQITSGLLDPLVLLTALALRTERIGLIGTASTTYSHAYTLARQFASLDHLSKGRAGWNIVTSWAPNAGLNYGLADSVDHGDRYRIAEEFVSAVDALWRSFPASALLDDTAAGQFLDASQIRPIHFEGKYIRTRGPLNVPGSPQGRPVFVQAGQSESGRAFAAQWAEAIFTAHGSRESAQAFYADIKGQAQRLGRRPQDIVILPGISAAIGSTEYEARQVWEELDSLTSIEVGLARLSARFGGHDFSAVPLDRLLTRDDFPDPDKVEASRSRAVGYVETSLRDGLTLRGLLKRLAGARGHLAVAGTPEQVADIIEDWFRHGAADGFNVMPPILNQQFELFTSEVVPLLRKRGLFREEYESRTLRGHFGLGGLAGTGAGGAPAARPREQALAA</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="61" xmlns="http://uniprot.org/uniprot">
    <accession>A9C0H9</accession>
    <name>A9C0H9_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="4">PPK2 domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="5" type="ordered locus">Daci_4422</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="6" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the polyphosphate kinase 2 (PPK2) family. Class I subfamily.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX37052.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_4422"/>
    <dbReference type="PRIDE" id="A9C0H9"/>
    <dbReference type="EnsemblBacteria" id="ABX37052">
        <property type="protein sequence ID" value="ABX37052"/>
        <property type="gene ID" value="Daci_4422"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_4422"/>
    <dbReference type="eggNOG" id="COG2326">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_048699_3_0_4"/>
    <dbReference type="OMA" id="ESTQWYY"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008976">
        <property type="term" value="F:polyphosphate kinase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016310">
        <property type="term" value="P:phosphorylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016898">
        <property type="entry name" value="Polyphosphate_phosphotransfera"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR022488">
        <property type="entry name" value="PPK2-related"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR022486">
        <property type="entry name" value="PPK2_PA0141"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03976">
        <property type="entry name" value="PPK2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF028756">
        <property type="entry name" value="PPK2_prd"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR03707">
        <property type="entry name" value="PPK2_P_aer"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-0418">Kinase</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="PPK2" evidence="4">
        <location>
            <begin position="83"/>
            <end position="309"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00009924"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022777"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="Pfam" id="PF03976"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="ABX37052.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="338" mass="39611" checksum="2209EEB8D8EF6C1A" modified="2008-01-15" version="1">MPGYSPSRTVTAASHIHATIPGANSWTPGFPTMYDELLPDHHDSLMQRIERDLLDSYDEELEMEIDDARLGSVGDDVDGADSVSRQTYFRELLRLQGELVKLQDWVQHHRKKVVILFEGRDAAGKGGVIKRITQRLNPRVCRVAALPAPNDRERTQWYFQRYVSHLPAGGEIVLFDRSWYNRAGVERVMGFCSDEEYEEFFRSVPEFEKMLVRSGITLVKYWFSITDDEQHLRFLGRVHDPLKQWKLSPMDFESRRRWEDYTKAKEAMLERTHIAEAPWWLVQAVDKKKARLNCISHLLTQLPYEEIEHPAIVLPERTRNPEYTRNPVPQHMYVPDLY</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="62" xmlns="http://uniprot.org/uniprot">
    <accession>A9C0J2</accession>
    <name>A9C0J2_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Oxidoreductase domain protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Daci_4435</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="4" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX37065.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012206237.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_4435"/>
    <dbReference type="PRIDE" id="A9C0J2"/>
    <dbReference type="EnsemblBacteria" id="ABX37065">
        <property type="protein sequence ID" value="ABX37065"/>
        <property type="gene ID" value="Daci_4435"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_4435"/>
    <dbReference type="eggNOG" id="COG0673">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_023194_1_1_4"/>
    <dbReference type="OMA" id="AAPWSWE"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000166">
        <property type="term" value="F:nucleotide binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004104">
        <property type="entry name" value="Gfo/Idh/MocA-like_OxRdtase_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000683">
        <property type="entry name" value="Gfo/Idh/MocA-like_OxRdtase_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036291">
        <property type="entry name" value="NAD(P)-bd_dom_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01408">
        <property type="entry name" value="GFO_IDH_MocA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02894">
        <property type="entry name" value="GFO_IDH_MocA_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51735">
        <property type="entry name" value="SSF51735"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="GFO_IDH_MocA" evidence="1">
        <location>
            <begin position="7"/>
            <end position="124"/>
        </location>
    </feature>
    <feature type="domain" description="GFO_IDH_MocA_C" evidence="2">
        <location>
            <begin position="137"/>
            <end position="347"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF01408"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF02894"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ABX37065.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="352" mass="37421" checksum="1D8EF750E77AA481" modified="2008-01-15" version="1">MAQLHPLRIAVAGAGAIGQAHIAAIGAQADCRLSAIVDPAPAARELAQRAGVPLWPDLGELIAHDRPDAVVLATPNRLHAPQAAQCMHARLPILLEKPVTSTVAEAQRLAALAERSGARVLVGHHRAHSPIMARAAALIAQGRLGRLVAVTGAALFYKPDAYFEEGPWRREAGGGPILLNMIHEVHNLRMLCGDIVAVQAFASHATRGFAVEDTVAINLRFASGALGSFVLSDTAASARSWEQTSQENKAYASYEDEDCYLVAGTFGSLAIPSMRLKTYASAGQRSWNEPFDLDVAAVEREDPLVRQMAHFAQVARGLAQPLVSVHDGLRNLQITEAIAEAARMGAAIDTTV</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="77" xmlns="http://uniprot.org/uniprot">
    <accession>A9C0Y0</accession>
    <name>A9C0Y0_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Short-chain dehydrogenase/reductase SDR</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Daci_5815</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="2" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX38443.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_5815"/>
    <dbReference type="PRIDE" id="A9C0Y0"/>
    <dbReference type="EnsemblBacteria" id="ABX38443">
        <property type="protein sequence ID" value="ABX38443"/>
        <property type="gene ID" value="Daci_5815"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_5815"/>
    <dbReference type="eggNOG" id="COG1028">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_010194_1_0_4"/>
    <dbReference type="OMA" id="FSSISYM"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016491">
        <property type="term" value="F:oxidoreductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036291">
        <property type="entry name" value="NAD(P)-bd_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020904">
        <property type="entry name" value="Sc_DH/Rdtase_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002347">
        <property type="entry name" value="SDR_fam"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00081">
        <property type="entry name" value="GDHRDH"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00080">
        <property type="entry name" value="SDRFAMILY"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51735">
        <property type="entry name" value="SSF51735"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00061">
        <property type="entry name" value="ADH_SHORT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ABX38443.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="270" mass="28362" checksum="3CCC731CAABA63E6" modified="2008-01-15" version="1">MDMQQRQLELAGPLPALAPSGRLRGRVCLVVGATSGIGRATALRMAEEGAAAVVVTGRRRELGLQLEQEIRQRGADGLFLACDATRQEDMAAVVEQAVERFGRLDAAFNNAGFQERRAVLAEQDDAVFSQVFDTNVRAVFHAMRHELAAMLAAGGGTIVNNTSVSGIRNPNPGLSLYGASKAAALSLTRAAAMEYAPRGIRINAVAPGRVVTDMMLGSGIADMHAVAAGLPLRRMGHPQEVATAVVWLMSDEAAFVVGHCLATDGGFLAG</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="69" xmlns="http://uniprot.org/uniprot">
    <accession>A9C109</accession>
    <name>A9C109_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="8">Precorrin-4 C11-methyltransferase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="8" type="ordered locus">Daci_5844</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="9" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="pathway">
        <text evidence="1">Cofactor biosynthesis; adenosylcobalamin biosynthesis.</text>
    </comment>
    <comment type="similarity">
        <text evidence="2 6">Belongs to the precorrin methyltransferase family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX38472.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012207641.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_5844"/>
    <dbReference type="PRIDE" id="A9C109"/>
    <dbReference type="EnsemblBacteria" id="ABX38472">
        <property type="protein sequence ID" value="ABX38472"/>
        <property type="gene ID" value="Daci_5844"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_5844"/>
    <dbReference type="eggNOG" id="COG2875">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_011276_7_1_4"/>
    <dbReference type="OMA" id="WSAMGEQ"/>
    <dbReference type="UniPathway" id="UPA00148"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046026">
        <property type="term" value="F:precorrin-4 C11-methyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009236">
        <property type="term" value="P:cobalamin biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniPathway"/>
    </dbReference>
    <dbReference type="GO" id="GO:0032259">
        <property type="term" value="P:methylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd11641">
        <property type="entry name" value="Precorrin-4_C11-MT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.950.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.1010.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000878">
        <property type="entry name" value="4pyrrol_Mease"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035996">
        <property type="entry name" value="4pyrrol_Methylase_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014777">
        <property type="entry name" value="4pyrrole_Mease_sub1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014776">
        <property type="entry name" value="4pyrrole_Mease_sub2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006362">
        <property type="entry name" value="Cbl_synth_CobM/CibF"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003043">
        <property type="entry name" value="Uropor_MeTrfase_CS"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00590">
        <property type="entry name" value="TP_methylase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53790">
        <property type="entry name" value="SSF53790"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01465">
        <property type="entry name" value="cobM_cbiF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00839">
        <property type="entry name" value="SUMT_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00840">
        <property type="entry name" value="SUMT_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3 6 8" id="KW-0489">Methyltransferase</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="5" id="KW-0949">S-adenosyl-L-methionine</keyword>
    <keyword evidence="4 6 8" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="TP_methylase" evidence="7">
        <location>
            <begin position="3"/>
            <end position="207"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004953"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00005879"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022603"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022691"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="RuleBase" id="RU003960"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="Pfam" id="PF00590"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="ABX38472.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="292" mass="30667" checksum="780C5CC78CE91E05" modified="2008-01-15" version="1">MTVHFIGAGPGAADLITVRGRDLMAACPVCLYAGSLIPRELLAHCPPGARIVNTASMSLDDIVAEIQAAEARGEDVARLHSGDLSVWSAMGEQLRRLREAGIAYTVTPGVPSFAAAAATLGAELTLPGLCQSVVLTRTSGRATAMPEGENLAAFAATGAVLAIHLSIHVAAKVQSELLPHYGADCPVAIVWRASWPDETVVRTTVGGLTEAVATHMERTALILVGRSLQAEDFGESRLYAADYDRRYRPLGTEPRFPATDVHANAALDTARDTLRDTVSDTVIDVPPGSPAP</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="80" xmlns="http://uniprot.org/uniprot">
    <accession>A9C125</accession>
    <name>A9C125_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="3">HTH-type transcriptional regulator MetR</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="8" type="ordered locus">Daci_5860</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="9" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the LysR transcriptional regulatory family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX38488.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012207657.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_5860"/>
    <dbReference type="PRIDE" id="A9C125"/>
    <dbReference type="EnsemblBacteria" id="ABX38488">
        <property type="protein sequence ID" value="ABX38488"/>
        <property type="gene ID" value="Daci_5860"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_5860"/>
    <dbReference type="eggNOG" id="COG0583">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_039613_6_0_4"/>
    <dbReference type="OMA" id="PYLAAWP"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003700">
        <property type="term" value="F:DNA-binding transcription factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009086">
        <property type="term" value="P:methionine biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="CDD" id="cd08441">
        <property type="entry name" value="PBP2_MetR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005119">
        <property type="entry name" value="LysR_subst-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037406">
        <property type="entry name" value="MetR_PBP2"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000847">
        <property type="entry name" value="Tscrpt_reg_HTH_LysR"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036390">
        <property type="entry name" value="WH_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00126">
        <property type="entry name" value="HTH_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03466">
        <property type="entry name" value="LysR_substrate"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00039">
        <property type="entry name" value="HTHLYSR"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46785">
        <property type="entry name" value="SSF46785"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50931">
        <property type="entry name" value="HTH_LYSR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-0028">Amino-acid biosynthesis</keyword>
    <keyword evidence="4" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="6" id="KW-0486">Methionine biosynthesis</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HTH lysR-type" evidence="7">
        <location>
            <begin position="1"/>
            <end position="59"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004496"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00009437"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00019365"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022490"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00022605"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023167"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="PROSITE" id="PS50931"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="ABX38488.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="304" mass="33453" checksum="3B37AD0DCE270D7A" modified="2008-01-15" version="1">MLERTHLAIVREVEKQGSLTAAAGVLCVTQSALSHSMKKLEQQLGTDIWLREGRSLRLTQAGQYLLAVAQRVLPQLDLAEERLRQFAQGERGALRIGMECHPCYQWLLKIVAPYLASWPDVDVDVKQKFQFGGIGALFGYEIDLLVTPDPLFKTGLEFVPVFDYEQVLVVSSAHALAGADFVEAAQLAPEVLITYPVPMDRLDIYNQFLMPAGITPRRQKAIETTDIMMQMVASGRGVAALPRWLVQEYAGKLDVVPVRLGAKGIAKQIFLGARVADLQTDYLQAFIELARQPLAAGAPPAQAA</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-01-19" version="58" xmlns="http://uniprot.org/uniprot">
    <accession>A9C154</accession>
    <name>A9C154_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Cell surface receptor IPT/TIG domain protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_5889</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX38517.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_5889"/>
    <dbReference type="EnsemblBacteria" id="ABX38517">
        <property type="protein sequence ID" value="ABX38517"/>
        <property type="gene ID" value="Daci_5889"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_5889"/>
    <dbReference type="eggNOG" id="COG2374">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="eggNOG" id="COG3468">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_016604_0_0_4"/>
    <dbReference type="OMA" id="QEFRTGE"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.40.10">
        <property type="match status" value="6"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013783">
        <property type="entry name" value="Ig-like_fold"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014756">
        <property type="entry name" value="Ig_E-set"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002909">
        <property type="entry name" value="IPT_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR026442">
        <property type="entry name" value="IPTL_CTERM"/>
    </dbReference>
    <dbReference type="Pfam" id="PF18203">
        <property type="entry name" value="IPTL-CTERM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01833">
        <property type="entry name" value="TIG"/>
        <property type="match status" value="6"/>
    </dbReference>
    <dbReference type="SMART" id="SM00429">
        <property type="entry name" value="IPT"/>
        <property type="match status" value="6"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF81296">
        <property type="entry name" value="SSF81296"/>
        <property type="match status" value="6"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR04174">
        <property type="entry name" value="IPTL_CTERM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0675">Receptor</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="IPT/TIG" evidence="1">
        <location>
            <begin position="172"/>
            <end position="254"/>
        </location>
    </feature>
    <feature type="domain" description="IPT/TIG" evidence="1">
        <location>
            <begin position="256"/>
            <end position="342"/>
        </location>
    </feature>
    <feature type="domain" description="IPT/TIG" evidence="1">
        <location>
            <begin position="344"/>
            <end position="430"/>
        </location>
    </feature>
    <feature type="domain" description="IPT/TIG" evidence="1">
        <location>
            <begin position="432"/>
            <end position="518"/>
        </location>
    </feature>
    <feature type="domain" description="IPT/TIG" evidence="1">
        <location>
            <begin position="520"/>
            <end position="603"/>
        </location>
    </feature>
    <feature type="domain" description="IPT/TIG" evidence="1">
        <location>
            <begin position="605"/>
            <end position="689"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="SMART" id="SM00429"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX38517.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="859" mass="86103" checksum="00D56124528023F5" modified="2008-01-15" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="74" xmlns="http://uniprot.org/uniprot">
    <accession>A9C174</accession>
    <name>A9C174_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Xanthine dehydrogenase, molybdopterin binding subunit</fullName>
            <ecNumber evidence="2">1.17.1.4</ecNumber>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_5909</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EC" id="1.17.1.4" evidence="2"/>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX38537.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012207706.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_5909"/>
    <dbReference type="PRIDE" id="A9C174"/>
    <dbReference type="EnsemblBacteria" id="ABX38537">
        <property type="protein sequence ID" value="ABX38537"/>
        <property type="gene ID" value="Daci_5909"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_5909"/>
    <dbReference type="eggNOG" id="COG4631">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_001681_4_1_4"/>
    <dbReference type="OMA" id="THYYQTV"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005506">
        <property type="term" value="F:iron ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030151">
        <property type="term" value="F:molybdenum ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004854">
        <property type="term" value="F:xanthine dehydrogenase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-EC"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000674">
        <property type="entry name" value="Ald_Oxase/Xan_DH_a/b"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036856">
        <property type="entry name" value="Ald_Oxase/Xan_DH_a/b_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016208">
        <property type="entry name" value="Ald_Oxase/xanthine_DH"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008274">
        <property type="entry name" value="AldOxase/xan_DH_Mopterin-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037165">
        <property type="entry name" value="AldOxase/xan_DH_Mopterin-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014309">
        <property type="entry name" value="Xanthine_DH_Mopterin-bd_su"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR11908">
        <property type="entry name" value="PTHR11908"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01315">
        <property type="entry name" value="Ald_Xan_dh_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02738">
        <property type="entry name" value="Ald_Xan_dh_C2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM01008">
        <property type="entry name" value="Ald_Xan_dh_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF54665">
        <property type="entry name" value="SSF54665"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56003">
        <property type="entry name" value="SSF56003"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR02965">
        <property type="entry name" value="xanthine_xdhB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0560">Oxidoreductase</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Ald_Xan_dh_C" evidence="1">
        <location>
            <begin position="56"/>
            <end position="165"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="SMART" id="SM01008"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX38537.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="808" mass="87363" checksum="C709C5105BA29124" modified="2008-01-15" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="64" xmlns="http://uniprot.org/uniprot">
    <accession>A9C1E0</accession>
    <name>A9C1E0_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="3">AMP-dependent synthetase and ligase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Daci_5975</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="4" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX38603.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012207772.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_5975"/>
    <dbReference type="PRIDE" id="A9C1E0"/>
    <dbReference type="EnsemblBacteria" id="ABX38603">
        <property type="protein sequence ID" value="ABX38603"/>
        <property type="gene ID" value="Daci_5975"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_5975"/>
    <dbReference type="eggNOG" id="COG0318">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_000022_59_7_4"/>
    <dbReference type="OMA" id="LGCITHG"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016874">
        <property type="term" value="F:ligase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.300.30">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.12780">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025110">
        <property type="entry name" value="AMP-bd_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045851">
        <property type="entry name" value="AMP-bd_C_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020845">
        <property type="entry name" value="AMP-binding_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000873">
        <property type="entry name" value="AMP-dep_Synth/Lig"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR042099">
        <property type="entry name" value="ANL_N_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00501">
        <property type="entry name" value="AMP-binding"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13193">
        <property type="entry name" value="AMP-binding_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00455">
        <property type="entry name" value="AMP_BINDING"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-0436">Ligase</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="AMP-binding" evidence="1">
        <location>
            <begin position="31"/>
            <end position="466"/>
        </location>
    </feature>
    <feature type="domain" description="AMP-binding_C" evidence="2">
        <location>
            <begin position="475"/>
            <end position="550"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF00501"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF13193"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ABX38603.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="572" mass="63116" checksum="4F08D07B024FD537" modified="2008-01-15" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="66" xmlns="http://uniprot.org/uniprot">
    <accession>A9C1H8</accession>
    <name>A9C1H8_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="3 4">Phosphatase NudJ</fullName>
            <ecNumber evidence="4">3.6.1.-</ecNumber>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="4" type="primary">nudJ</name>
        <name evidence="6" type="ordered locus">Daci_6013</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="7" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="4">
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </cofactor>
    </comment>
    <comment type="subunit">
        <text evidence="2 4">Monomer.</text>
    </comment>
    <comment type="similarity">
        <text evidence="1 4">Belongs to the Nudix hydrolase family. NudJ subfamily.</text>
    </comment>
    <dbReference type="EC" id="3.6.1.-" evidence="4"/>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX38641.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012207810.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_6013"/>
    <dbReference type="PRIDE" id="A9C1H8"/>
    <dbReference type="EnsemblBacteria" id="ABX38641">
        <property type="protein sequence ID" value="ABX38641"/>
        <property type="gene ID" value="Daci_6013"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_6013"/>
    <dbReference type="eggNOG" id="COG1051">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_037162_6_0_4"/>
    <dbReference type="OMA" id="QPAGHLD"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0017110">
        <property type="term" value="F:nucleoside-diphosphatase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0017111">
        <property type="term" value="F:nucleoside-triphosphatase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004787">
        <property type="term" value="F:thiamine-diphosphatase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd03675">
        <property type="entry name" value="Nudix_Hydrolase_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015797">
        <property type="entry name" value="NUDIX_hydrolase-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000086">
        <property type="entry name" value="NUDIX_hydrolase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR033713">
        <property type="entry name" value="NudJ"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00293">
        <property type="entry name" value="NUDIX"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55811">
        <property type="entry name" value="SSF55811"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51462">
        <property type="entry name" value="NUDIX"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4 6" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="4" id="KW-0460">Magnesium</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Nudix hydrolase" evidence="5">
        <location>
            <begin position="7"/>
            <end position="141"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00007608"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00011245"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00015552"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="RuleBase" id="RU364043"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="5">
        <source>
            <dbReference type="PROSITE" id="PS51462"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="ABX38641.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="166" mass="18662" checksum="9C7A75915083AEFE" modified="2008-01-15" version="1">MRAMPDRWKPNVTVAAIIERDGRFLLVEEDTADGVRYNTPAGHLDPAESPIAACVREVDEETAHDFVPTALVGIYLNRFVRTRTGSDITYLRFAFTGELGDFRPGQPLDDGILRTVWMTLDELKACAAQHRSPLVMQSIEDYLAGRRYPLELIHTDPSVMQAPQPH</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="50" xmlns="http://uniprot.org/uniprot">
    <accession>A9C1Q2</accession>
    <name>A9C1Q2_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Daci_2599</name>
        <name evidence="2" type="ordered locus">Daci_2633</name>
    </gene>
    <organism evidence="1 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
            <strain evidence="1">SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="1" key="3">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <authorList>
                <consortium name="US DOE Joint Genome Institute"/>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE</scope>
        <source>
            <strain evidence="1">SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX35237.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX35271.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012204516.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_2599"/>
    <dbReference type="PRIDE" id="A9C1Q2"/>
    <dbReference type="EnsemblBacteria" id="ABX35237">
        <property type="protein sequence ID" value="ABX35237"/>
        <property type="gene ID" value="Daci_2599"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="ABX35271">
        <property type="protein sequence ID" value="ABX35271"/>
        <property type="gene ID" value="Daci_2633"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_2599"/>
    <dbReference type="KEGG" id="dac:Daci_2633"/>
    <dbReference type="eggNOG" id="ENOG5030UB9">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_100211_0_0_4"/>
    <dbReference type="OMA" id="FCTGDEN"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ABX35237.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX35271.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="161" mass="17633" checksum="00FD2EA2D4909894" modified="2008-01-15" version="1">MAVLQQAGRIALAKAVAAQTIHIAWGRGLPAWDAAPEPEPITANALVDEIGRRLVTEVRFARPDDNGEIELPSGARYSVSDTPTTFVYLRAAFGFDDAKGEDVREMGVFFGTQVATDVPPGQRWVLASQLTGKGELYTLERRPRILRSGSVRQVEEIILPF</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="49" xmlns="http://uniprot.org/uniprot">
    <accession>A9C202</accession>
    <name>A9C202_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="6">DAPG_hydrolase domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="7" type="ordered locus">Daci_3000</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="8" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>Zn(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:29105"/>
        </cofactor>
    </comment>
    <comment type="similarity">
        <text evidence="5">Belongs to the DAPG/phloretin hydrolase family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX35638.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012204844.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_3000"/>
    <dbReference type="PRIDE" id="A9C202"/>
    <dbReference type="EnsemblBacteria" id="ABX35638">
        <property type="protein sequence ID" value="ABX35638"/>
        <property type="gene ID" value="Daci_3000"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_3000"/>
    <dbReference type="eggNOG" id="ENOG502Z8Q4">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_055313_2_0_4"/>
    <dbReference type="OMA" id="FFETTQH"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016787">
        <property type="term" value="F:hydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR041526">
        <property type="entry name" value="DAPG_hydrolase"/>
    </dbReference>
    <dbReference type="Pfam" id="PF18089">
        <property type="entry name" value="DAPG_hydrolase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="2" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="4" id="KW-0862">Zinc</keyword>
    <feature type="domain" description="DAPG_hydrolase" evidence="6">
        <location>
            <begin position="8"/>
            <end position="218"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001947"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022833"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023459"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="Pfam" id="PF18089"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="ABX35638.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="231" mass="26004" checksum="BEBD9EFABCD3B084" modified="2008-01-15" version="1">MNSHAFEPDISRIDELLHITPLRLETGIQRLPSGCLVVACRTDLHGCSGRMLDWWFKFFETTQHIKWWHPHDHIAHRGWDAQWKKGESYIGASIEAVESLADIPPVAARLKFHDPRELFDPAQLELAFAEKRASAAVYARIGFGEHVQLDASGDPMDGQMVHLARDTPFGCVLRSRFLLGQSCADPAAELPDALGLGLLRHCYTEFTYLSRFLPSLYYGEHGNGEAAPLPW</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-01-19" version="41" xmlns="http://uniprot.org/uniprot">
    <accession>A9C218</accession>
    <name>A9C218_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Daci_3016</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="2" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX35654.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012204860.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_3016"/>
    <dbReference type="EnsemblBacteria" id="ABX35654">
        <property type="protein sequence ID" value="ABX35654"/>
        <property type="gene ID" value="Daci_3016"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_3016"/>
    <dbReference type="eggNOG" id="ENOG502ZKBY">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_1934594_0_0_4"/>
    <dbReference type="OMA" id="CSAMAEV"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.429.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR014347">
        <property type="entry name" value="Tautomerase/MIF_sf"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF55331">
        <property type="entry name" value="SSF55331"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ABX35654.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="139" mass="15028" checksum="B45B8743E8FCA934" modified="2008-01-15" version="1">MPHIAIEVSPSLLPSIQWEPVLHAMHLALAERGWARLADLKSRVAPIAVGLCGDDPHAQQLIATLTLTNPRPPQMCSAMAEVVFEHLSRAIGAIGPIGPIDAHPEAAAWVQCGVFLQEHPKSHYLKRQWNAPPPAPSTP</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="57" xmlns="http://uniprot.org/uniprot">
    <accession>A9C224</accession>
    <name>A9C224_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Bifunctional deaminase-reductase domain protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_3022</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX35660.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012204866.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_3022"/>
    <dbReference type="PRIDE" id="A9C224"/>
    <dbReference type="EnsemblBacteria" id="ABX35660">
        <property type="protein sequence ID" value="ABX35660"/>
        <property type="gene ID" value="Daci_3022"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_3022"/>
    <dbReference type="eggNOG" id="COG0262">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_043966_4_1_4"/>
    <dbReference type="OMA" id="LAGQFYD"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008703">
        <property type="term" value="F:5-amino-6-(5-phosphoribosylamino)uracil reductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009231">
        <property type="term" value="P:riboflavin biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.430.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR024072">
        <property type="entry name" value="DHFR-like_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002734">
        <property type="entry name" value="RibDG_C"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01872">
        <property type="entry name" value="RibD_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53597">
        <property type="entry name" value="SSF53597"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="RibD_C" evidence="1">
        <location>
            <begin position="5"/>
            <end position="175"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF01872"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX35660.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="186" mass="20049" checksum="73A411B9DE5CBCAB" modified="2008-01-15" version="1">MKTQYFAATSLDGFLATEDDSLDWLFPLGDMQAAGYPEFIAGVGALAMGSATYEWMLRHAETVAQETGAAWPYTQPAWVFSSRTLPGIPGADIRFVSGDVRAVHAQMQAAAGGRNLWIMGGGDLAGQFYDAGLLDEMILSVGSATLGRGKPLFPRRVLHPVLRLLSVRQIGEGMAVLHYEVRKSTA</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="44" xmlns="http://uniprot.org/uniprot">
    <accession>A9C2B0</accession>
    <name>A9C2B0_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_3416</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX36054.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012205254.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_3416"/>
    <dbReference type="PRIDE" id="A9C2B0"/>
    <dbReference type="EnsemblBacteria" id="ABX36054">
        <property type="protein sequence ID" value="ABX36054"/>
        <property type="gene ID" value="Daci_3416"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_3416"/>
    <dbReference type="eggNOG" id="COG2887">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_590150_0_0_4"/>
    <dbReference type="OMA" id="DFSCYVP"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR021229">
        <property type="entry name" value="DUF2800"/>
    </dbReference>
    <dbReference type="Pfam" id="PF10926">
        <property type="entry name" value="DUF2800"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="38"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="392"/>
            <end position="431"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Polar residues" evidence="1">
        <location>
            <begin position="11"/>
            <end position="38"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX36054.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="463" mass="50870" checksum="A409C01E7D629C6E" modified="2008-01-15" version="1">MSKKHARLSPSSADRWTSCTASPAAQDGIPNENSDASRAGTTCHQVQEELLLNPERDPQVYLGAKLVFWVHPESDSKGETWNEEFYAGMAAEVQVEAEVEVTQEMIDAVVSAVTFIREQHQLLGGELLVEQRVPIGQFTGEEDAYGSADVILLGADWLHVMDSKFGRKRVHAGKVIRHESVDFITGEILSLLLGPNLQMASYALGAVHAHDIFGEVKTVTMTIVQPFIGHTDSFTCSIDELREVEKFLAAKAEETRTAPRFVPDYDNCFFCRAKGTCYAQTSKALGTVFDGFGEATSGVLRRPDPLMLGSQYALVPFVQQWAKDVEEATYRALQNGEPVVRNDGVPYKLVPGRAAKRTWRDEEAAAAVLHAARIPRDRMYLFQLISPAMAEAMSKQKRPPKGQPPQPAELPPSKWKDLQPLIAQGEPAPQIALATDPRPALCKADGFEDAPTPIDPMAALFGE</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="63" xmlns="http://uniprot.org/uniprot">
    <accession>A9C2G8</accession>
    <name>A9C2G8_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="7">Histone family protein nucleoid-structuring protein H-NS</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ordered locus">Daci_3476</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="8" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Cytoplasm</location>
            <location evidence="1">Nucleoid</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the histone-like protein H-NS family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX36112.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012205312.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_3476"/>
    <dbReference type="PRIDE" id="A9C2G8"/>
    <dbReference type="EnsemblBacteria" id="ABX36112">
        <property type="protein sequence ID" value="ABX36112"/>
        <property type="gene ID" value="Daci_3476"/>
    </dbReference>
    <dbReference type="GeneID" id="60687701"/>
    <dbReference type="KEGG" id="dac:Daci_3476"/>
    <dbReference type="eggNOG" id="COG2916">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_117503_5_1_4"/>
    <dbReference type="OMA" id="DNDEETW"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009295">
        <property type="term" value="C:nucleoid"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030527">
        <property type="term" value="F:structural constituent of chromatin"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006355">
        <property type="term" value="P:regulation of transcription, DNA-templated"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027444">
        <property type="entry name" value="H-NS_C_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001801">
        <property type="entry name" value="Histone_HNS"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00816">
        <property type="entry name" value="Histone_HNS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00528">
        <property type="entry name" value="HNS"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="4" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HNS" evidence="6">
        <location>
            <begin position="58"/>
            <end position="97"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="5">
        <location>
            <begin position="73"/>
            <end position="97"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004453"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00010610"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022490"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="6">
        <source>
            <dbReference type="SMART" id="SM00528"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="ABX36112.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="97" mass="10620" checksum="DE39E9410C85E649" modified="2008-01-15" version="1">MTTDYKTLLQQKAHLEAQIAEVLKTEKSGAIAQVRTIIDQYGLTEADVFPSSKAKAGGGFRVVGVPKYRDPATGATWTGRGKQPRWIEGKDRTPFAI</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="57" xmlns="http://uniprot.org/uniprot">
    <accession>A9C2H5</accession>
    <name>A9C2H5_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="2">TfoX_N domain-containing protein</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Daci_3692</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="4" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX36324.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012205520.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_3692"/>
    <dbReference type="PRIDE" id="A9C2H5"/>
    <dbReference type="EnsemblBacteria" id="ABX36324">
        <property type="protein sequence ID" value="ABX36324"/>
        <property type="gene ID" value="Daci_3692"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_3692"/>
    <dbReference type="eggNOG" id="COG3070">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_136016_0_0_4"/>
    <dbReference type="OMA" id="HAFMVDG"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007076">
        <property type="entry name" value="TfoX_N"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04993">
        <property type="entry name" value="TfoX_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="TfoX_N" evidence="2">
        <location>
            <begin position="19"/>
            <end position="106"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="108"/>
            <end position="154"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Pro residues" evidence="1">
        <location>
            <begin position="128"/>
            <end position="142"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF04993"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ABX36324.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="154" mass="16792" checksum="2E3C3F2664D45B69" modified="2008-01-15" version="1">MPARPLSDTTLHLIDAVREALAGCDDVQEKRMFGCHVFMVNGKLCLGVEDDELLVRLPPSQHAAVAETPGLRPLSSKGQMDGYFFIGPAAYATRQQWQHWIAQALAFNPHAKATPPKKRKPQASEPAPADAKTPPAPPAPAGRRTRKHPIFGDE</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="53" xmlns="http://uniprot.org/uniprot">
    <accession>A9C2W8</accession>
    <name>A9C2W8_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Phage transcriptional regulator, AlpA</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Daci_4141</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="2" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX36772.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012205952.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_4141"/>
    <dbReference type="PRIDE" id="A9C2W8"/>
    <dbReference type="EnsemblBacteria" id="ABX36772">
        <property type="protein sequence ID" value="ABX36772"/>
        <property type="gene ID" value="Daci_4141"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_4141"/>
    <dbReference type="eggNOG" id="COG3311">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_140176_15_1_4"/>
    <dbReference type="OMA" id="EVDGWID"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010260">
        <property type="entry name" value="AlpA"/>
    </dbReference>
    <dbReference type="Pfam" id="PF05930">
        <property type="entry name" value="Phage_AlpA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ABX36772.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="70" mass="8273" checksum="D29F2D85D430395B" modified="2008-01-15" version="1">MSQTPVLPPNERRILRLEEVEAKSGFKRAHIYNLMKKRQFPQALRLGVRAVGWDSIEIDQWIDERVNNRA</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-01-19" version="49" xmlns="http://uniprot.org/uniprot">
    <accession>A9C2Z5</accession>
    <name>A9C2Z5_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_4168</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX36799.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012205977.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_4168"/>
    <dbReference type="EnsemblBacteria" id="ABX36799">
        <property type="protein sequence ID" value="ABX36799"/>
        <property type="gene ID" value="Daci_4168"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_4168"/>
    <dbReference type="eggNOG" id="COG3279">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_119102_0_0_4"/>
    <dbReference type="OMA" id="CICLWWT"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR021300">
        <property type="entry name" value="Integr_conj_element_PFL4695"/>
    </dbReference>
    <dbReference type="Pfam" id="PF11072">
        <property type="entry name" value="DUF2859"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR03765">
        <property type="entry name" value="ICE_PFL_4695"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="1">
        <location>
            <begin position="1"/>
            <end position="27"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5002733308" evidence="1">
        <location>
            <begin position="28"/>
            <end position="182"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX36799.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="182" mass="19170" checksum="191FCB36484181D7" modified="2008-01-15" version="1">MKTCHLTHLTLKGLLVLLAALPLASRAGEPLIVVEDRGGTSALPYYEALNLQPRANAPAGPPIPMLPVPATPMDEAAMLPVRSAKLTPGTVARRVIEAPGLRPFVVVGDDEASHAWLLRQAGSLRERGAVGLVVNVETMQGLARLRALVPGVPLAPVAGDDLAERLGLRHYPVLITATGIEQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="79" xmlns="http://uniprot.org/uniprot">
    <accession>A9C333</accession>
    <name>A9C333_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="3">APHP domain protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Daci_4515</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="4" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX37144.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_4515"/>
    <dbReference type="PRIDE" id="A9C333"/>
    <dbReference type="EnsemblBacteria" id="ABX37144">
        <property type="protein sequence ID" value="ABX37144"/>
        <property type="gene ID" value="Daci_4515"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_4515"/>
    <dbReference type="eggNOG" id="COG0823">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="eggNOG" id="COG0841">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="eggNOG" id="COG1361">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="eggNOG" id="COG1572">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="eggNOG" id="COG1657">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="eggNOG" id="COG4733">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_223098_0_0_4"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003824">
        <property type="term" value="F:catalytic activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd00063">
        <property type="entry name" value="FN3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.130.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.60.40.10">
        <property type="match status" value="16"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011635">
        <property type="entry name" value="CARDB"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000421">
        <property type="entry name" value="FA58C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003961">
        <property type="entry name" value="FN3_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036116">
        <property type="entry name" value="FN3_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008979">
        <property type="entry name" value="Galactose-bd-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR022038">
        <property type="entry name" value="Ig-like_bact"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR013783">
        <property type="entry name" value="Ig-like_fold"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001330">
        <property type="entry name" value="PFTB_repeat"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008930">
        <property type="entry name" value="Terpenoid_cyclase/PrenylTrfase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015943">
        <property type="entry name" value="WD40/YVTN_repeat-like_dom_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF12245">
        <property type="entry name" value="Big_3_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13750">
        <property type="entry name" value="Big_3_3"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07705">
        <property type="entry name" value="CARDB"/>
        <property type="match status" value="4"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00754">
        <property type="entry name" value="F5_F8_type_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00432">
        <property type="entry name" value="Prenyltrans"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SMART" id="SM00060">
        <property type="entry name" value="FN3"/>
        <property type="match status" value="6"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48239">
        <property type="entry name" value="SSF48239"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF49265">
        <property type="entry name" value="SSF49265"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF49785">
        <property type="entry name" value="SSF49785"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="1">
        <location>
            <begin position="1"/>
            <end position="25"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5002736113" evidence="1">
        <location>
            <begin position="26"/>
            <end position="5743"/>
        </location>
    </feature>
    <feature type="domain" description="Fibronectin type-III" evidence="2">
        <location>
            <begin position="3179"/>
            <end position="3253"/>
        </location>
    </feature>
    <feature type="domain" description="Fibronectin type-III" evidence="2">
        <location>
            <begin position="3370"/>
            <end position="3551"/>
        </location>
    </feature>
    <feature type="domain" description="Fibronectin type-III" evidence="2">
        <location>
            <begin position="3568"/>
            <end position="3646"/>
        </location>
    </feature>
    <feature type="domain" description="Fibronectin type-III" evidence="2">
        <location>
            <begin position="3749"/>
            <end position="3950"/>
        </location>
    </feature>
    <feature type="domain" description="Fibronectin type-III" evidence="2">
        <location>
            <begin position="3966"/>
            <end position="4039"/>
        </location>
    </feature>
    <feature type="domain" description="Fibronectin type-III" evidence="2">
        <location>
            <begin position="4055"/>
            <end position="4138"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="SMART" id="SM00060"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ABX37144.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="5743" mass="604693" checksum="487DCD0768932A78" modified="2008-01-15" version="1"> </sequence>
</entry>
<entry dataset="Swiss-Prot" created="2009-04-14" modified="2022-08-03" version="74" xmlns="http://uniprot.org/uniprot">
    <accession>A9C3B1</accession>
    <name>AZOR_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">FMN-dependent NADH:quinone oxidoreductase</fullName>
            <ecNumber evidence="1">1.6.5.-</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="1">Azo-dye reductase</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="1">FMN-dependent NADH-azo compound oxidoreductase</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="1">FMN-dependent NADH-azoreductase</fullName>
            <ecNumber evidence="1">1.7.1.17</ecNumber>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="1" type="primary">azoR</name>
        <name type="ordered locus">Daci_4593</name>
    </gene>
    <organism>
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference key="1">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain>DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="1">Quinone reductase that provides resistance to thiol-specific stress caused by electrophilic quinones.</text>
    </comment>
    <comment type="function">
        <text evidence="1">Also exhibits azoreductase activity. Catalyzes the reductive cleavage of the azo bond in aromatic azo compounds to the corresponding amines.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>2 a quinone + H(+) + NADH = 2 a 1,4-benzosemiquinone + NAD(+)</text>
            <dbReference type="Rhea" id="RHEA:65952"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:57540"/>
            <dbReference type="ChEBI" id="CHEBI:57945"/>
            <dbReference type="ChEBI" id="CHEBI:132124"/>
            <dbReference type="ChEBI" id="CHEBI:134225"/>
        </reaction>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="1">
            <text>anthranilate + N,N-dimethyl-1,4-phenylenediamine + 2 NAD(+) = 2-(4-dimethylaminophenyl)diazenylbenzoate + 2 H(+) + 2 NADH</text>
            <dbReference type="Rhea" id="RHEA:55872"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:15783"/>
            <dbReference type="ChEBI" id="CHEBI:16567"/>
            <dbReference type="ChEBI" id="CHEBI:57540"/>
            <dbReference type="ChEBI" id="CHEBI:57945"/>
            <dbReference type="ChEBI" id="CHEBI:71579"/>
            <dbReference type="EC" id="1.7.1.17"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>FMN</name>
            <dbReference type="ChEBI" id="CHEBI:58210"/>
        </cofactor>
        <text evidence="1">Binds 1 FMN per subunit.</text>
    </comment>
    <comment type="subunit">
        <text evidence="1">Homodimer.</text>
    </comment>
    <comment type="similarity">
        <text evidence="1">Belongs to the azoreductase type 1 family.</text>
    </comment>
    <dbReference type="EC" id="1.6.5.-" evidence="1"/>
    <dbReference type="EC" id="1.7.1.17" evidence="1"/>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX37222.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012206392.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A9C3B1"/>
    <dbReference type="SMR" id="A9C3B1"/>
    <dbReference type="STRING" id="398578.Daci_4593"/>
    <dbReference type="PRIDE" id="A9C3B1"/>
    <dbReference type="EnsemblBacteria" id="ABX37222">
        <property type="protein sequence ID" value="ABX37222"/>
        <property type="gene ID" value="Daci_4593"/>
    </dbReference>
    <dbReference type="GeneID" id="60688875"/>
    <dbReference type="KEGG" id="dac:Daci_4593"/>
    <dbReference type="eggNOG" id="COG1182">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_088964_0_0_4"/>
    <dbReference type="OMA" id="GAPFYNF"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009055">
        <property type="term" value="F:electron transfer activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0010181">
        <property type="term" value="F:FMN binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016652">
        <property type="term" value="F:oxidoreductase activity, acting on NAD(P)H, NAD(P) as acceptor"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016655">
        <property type="term" value="F:oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.360">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01216">
        <property type="entry name" value="Azoreductase_type1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003680">
        <property type="entry name" value="Flavodoxin_fold"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029039">
        <property type="entry name" value="Flavoprotein-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023048">
        <property type="entry name" value="NADH:quinone_OxRdtase_FMN_depd"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02525">
        <property type="entry name" value="Flavodoxin_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52218">
        <property type="entry name" value="SSF52218"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword id="KW-0285">Flavoprotein</keyword>
    <keyword id="KW-0288">FMN</keyword>
    <keyword id="KW-0520">NAD</keyword>
    <keyword id="KW-0560">Oxidoreductase</keyword>
    <keyword id="KW-1185">Reference proteome</keyword>
    <feature type="chain" id="PRO_1000138973" description="FMN-dependent NADH:quinone oxidoreductase">
        <location>
            <begin position="1"/>
            <end position="212"/>
        </location>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <position position="9"/>
        </location>
        <ligand>
            <name>FMN</name>
            <dbReference type="ChEBI" id="CHEBI:58210"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <begin position="15"/>
            <end position="17"/>
        </location>
        <ligand>
            <name>FMN</name>
            <dbReference type="ChEBI" id="CHEBI:58210"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <begin position="138"/>
            <end position="141"/>
        </location>
        <ligand>
            <name>FMN</name>
            <dbReference type="ChEBI" id="CHEBI:58210"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000255" key="1">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01216"/>
        </source>
    </evidence>
    <sequence length="212" mass="22017" checksum="9196B0FC82E9584D" modified="2008-01-15" version="1">MQVLHIDSSITGAASVSRQLTAQTVAALVAANPGAKVEYLDLAVNAPDHLNAVSMGFRTGQAATTEAERAQNAISEALVSQFLAADVVVVGAPFYNFTISSQLKAWIDRIAQGGRTFRYTAAGPEGLAKGKKVIVASTRGGVYSTSEMGQALEHQESYLKTVFGFLGITDVSIVRAEGVAMGDESKAKALESARSDIVRAAAAANQEAAIAA</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="65" xmlns="http://uniprot.org/uniprot">
    <accession>A9C3F7</accession>
    <name>A9C3F7_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Aliphatic sulfonates family ABC transporter, periplsmic ligand-binding protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Daci_4639</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="4" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX37268.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012206438.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_4639"/>
    <dbReference type="PRIDE" id="A9C3F7"/>
    <dbReference type="EnsemblBacteria" id="ABX37268">
        <property type="protein sequence ID" value="ABX37268"/>
        <property type="gene ID" value="Daci_4639"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_4639"/>
    <dbReference type="eggNOG" id="COG0715">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_028871_2_0_4"/>
    <dbReference type="OMA" id="KTADFQY"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016020">
        <property type="term" value="C:membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0042626">
        <property type="term" value="F:ATPase-coupled transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010067">
        <property type="entry name" value="ABC_SsuA_sub-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001638">
        <property type="entry name" value="Solute-binding_3/MltF_N"/>
    </dbReference>
    <dbReference type="SMART" id="SM00062">
        <property type="entry name" value="PBPb"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01728">
        <property type="entry name" value="SsuA_fam"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0732">Signal</keyword>
    <feature type="domain" description="PBPb" evidence="2">
        <location>
            <begin position="48"/>
            <end position="270"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022729"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="SMART" id="SM00062"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ABX37268.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="351" mass="37735" checksum="575F3FCE549EB313" modified="2008-01-15" version="1">MNANSKKPRLDRVRRQALQLLGTTAFSWSLAGQYARAETPAAVAGPEQLRIGYQKSAVNLVILKQQGVLEKRFAGTKVSWLEFPAGPQLLEALAAGSLDFGLTGDSPPVFAQAAGRDLLYVGAEPPKPESSAILVPSDSPLRTLADLKGRRVALQKGSSAHYLLVRALDKAGLAWNEIQPVYLAPADARAAFERKSVDAWAIWDPFYAATELAIRPRVLANGEGLSGNASFYLAARGLVERHPQVLRALFDELTRADRLAQSARQEAVALVAGFSGLDAAVVSRFIARRPSSPVGLLAAQTVVDQQRVADAFFRLGLIPRQVQVADIVWRPSAAEYARLAEPAAARPSSAL</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="75" xmlns="http://uniprot.org/uniprot">
    <accession>A9C3G3</accession>
    <name>A9C3G3_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="10">TonB-dependent receptor</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="10" type="ordered locus">Daci_4645</name>
    </gene>
    <organism evidence="10 11">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="10 11" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="11">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="11" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="11">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="6">Cell outer membrane</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="1 6">Belongs to the TonB-dependent receptor family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX37274.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012206444.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_4645"/>
    <dbReference type="PRIDE" id="A9C3G3"/>
    <dbReference type="EnsemblBacteria" id="ABX37274">
        <property type="protein sequence ID" value="ABX37274"/>
        <property type="gene ID" value="Daci_4645"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_4645"/>
    <dbReference type="eggNOG" id="COG4771">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_008287_8_2_4"/>
    <dbReference type="OMA" id="VPYDGYV"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009279">
        <property type="term" value="C:cell outer membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.170.130.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.170.20">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR039426">
        <property type="entry name" value="BtuB-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012910">
        <property type="entry name" value="Plug_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037066">
        <property type="entry name" value="Plug_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000531">
        <property type="entry name" value="TonB-dep_rcpt_b-brl"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036942">
        <property type="entry name" value="TonB_rcpt_b-brl_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30069">
        <property type="entry name" value="PTHR30069"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07715">
        <property type="entry name" value="Plug"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00593">
        <property type="entry name" value="TonB_dep_Rec"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-0998">Cell outer membrane</keyword>
    <keyword evidence="3 6" id="KW-0472">Membrane</keyword>
    <keyword evidence="4 10" id="KW-0675">Receptor</keyword>
    <keyword evidence="11" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="7" id="KW-0732">Signal</keyword>
    <keyword evidence="2 6" id="KW-0798">TonB box</keyword>
    <feature type="signal peptide" evidence="7">
        <location>
            <begin position="1"/>
            <end position="44"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5002733334" evidence="7">
        <location>
            <begin position="45"/>
            <end position="693"/>
        </location>
    </feature>
    <feature type="domain" description="Plug" evidence="9">
        <location>
            <begin position="77"/>
            <end position="179"/>
        </location>
    </feature>
    <feature type="domain" description="TonB_dep_Rec" evidence="8">
        <location>
            <begin position="218"/>
            <end position="692"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00009810"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00023077"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023170"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023237"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="RuleBase" id="RU003357"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="Pfam" id="PF00593"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="9">
        <source>
            <dbReference type="Pfam" id="PF07715"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="EMBL" id="ABX37274.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="693" mass="76270" checksum="945ADF159F266ED9" modified="2008-01-15" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="58" xmlns="http://uniprot.org/uniprot">
    <accession>A9BLK2</accession>
    <name>A9BLK2_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Virulence protein SciE type</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_3856</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX36487.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012205681.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_3856"/>
    <dbReference type="PRIDE" id="A9BLK2"/>
    <dbReference type="EnsemblBacteria" id="ABX36487">
        <property type="protein sequence ID" value="ABX36487"/>
        <property type="gene ID" value="Daci_3856"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_3856"/>
    <dbReference type="eggNOG" id="COG4455">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_087908_1_0_4"/>
    <dbReference type="OMA" id="GRYYWIP"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.25.40.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009211">
        <property type="entry name" value="TagJ"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011990">
        <property type="entry name" value="TPR-like_helical_dom_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07024">
        <property type="entry name" value="ImpE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF029288">
        <property type="entry name" value="SciE_ImpE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="222"/>
            <end position="247"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX36487.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="269" mass="29991" checksum="13E64EE700901A50" modified="2008-01-15" version="1">MPLPSFTSQLSLDEQLKALKDQIRQAPASVPLRVYYFQLLCVLGEWQKALEQLQLCAQLDPSCEPMARAYREAIRCEVLRAEVFAGKKKPFLMGEPAQWLACLIDALAHEGAAAQDLRARALDEAPATAGHMGEHRFEWLADSDTRLGPVCELLAHGSYYWLPFDAIAQIGFEPVQDLRDLIWLPCEVTLREGGALQGFMPARYPLAPGDDDAVRMSRRTQWSPLDTGSSDPDESSGHVAGHGQRTWVTDSEDFPMLQVRQLALETATR</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="76" xmlns="http://uniprot.org/uniprot">
    <accession>A9BLN4</accession>
    <name>A9BLN4_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Transcriptional regulator, TetR family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Daci_3888</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="4" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX36519.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012205713.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_3888"/>
    <dbReference type="PRIDE" id="A9BLN4"/>
    <dbReference type="EnsemblBacteria" id="ABX36519">
        <property type="protein sequence ID" value="ABX36519"/>
        <property type="gene ID" value="Daci_3888"/>
    </dbReference>
    <dbReference type="GeneID" id="60688181"/>
    <dbReference type="KEGG" id="dac:Daci_3888"/>
    <dbReference type="eggNOG" id="COG1309">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_069356_28_1_4"/>
    <dbReference type="OMA" id="CAQTIYT"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR009057">
        <property type="entry name" value="Homeobox-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001647">
        <property type="entry name" value="HTH_TetR"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036271">
        <property type="entry name" value="Tet_transcr_reg_TetR-rel_C_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR011075">
        <property type="entry name" value="TetR_C"/>
    </dbReference>
    <dbReference type="Pfam" id="PF16925">
        <property type="entry name" value="TetR_C_13"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00440">
        <property type="entry name" value="TetR_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00455">
        <property type="entry name" value="HTHTETR"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46689">
        <property type="entry name" value="SSF46689"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF48498">
        <property type="entry name" value="SSF48498"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50977">
        <property type="entry name" value="HTH_TETR_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HTH tetR-type" evidence="2">
        <location>
            <begin position="6"/>
            <end position="66"/>
        </location>
    </feature>
    <feature type="DNA-binding region" description="H-T-H motif" evidence="1">
        <location>
            <begin position="29"/>
            <end position="48"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="PROSITE-ProRule" id="PRU00335"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS50977"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ABX36519.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="193" mass="21136" checksum="697D46D8F3A27D9D" modified="2008-01-15" version="1">MKKPAQETRQHILDVAKALMTQKGYTAVGLAEVVAAAGVPKGSFYYYFKSKEEFGQALLQEYFDEYLAKIDALMETPDPAISRLMTYFRHWTQNQCSAHAGGQCLVVKLGPEVCDLSDDMRSVLRTGTDAIITRLTDCVRAGQADGSITSDLDAPALAESLYQLWLGASLLSKLGRHEEPFAAALVSTKRLLG</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="56" xmlns="http://uniprot.org/uniprot">
    <accession>A9BLQ9</accession>
    <name>A9BLQ9_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Daci_4217</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="2" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX36848.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012206020.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_4217"/>
    <dbReference type="PRIDE" id="A9BLQ9"/>
    <dbReference type="EnsemblBacteria" id="ABX36848">
        <property type="protein sequence ID" value="ABX36848"/>
        <property type="gene ID" value="Daci_4217"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_4217"/>
    <dbReference type="eggNOG" id="COG4102">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_032896_3_1_4"/>
    <dbReference type="OMA" id="LWESAMT"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010869">
        <property type="entry name" value="DUF1501"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006311">
        <property type="entry name" value="TAT_signal"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07394">
        <property type="entry name" value="DUF1501"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51318">
        <property type="entry name" value="TAT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ABX36848.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="407" mass="42667" checksum="463C0423CA3F4003" modified="2008-01-15" version="1">MTTIHTNATNIATSTMARRNRRHFLGLLAAGTGLALAAPHLALARAATERRFVFIIQRGAADGLETLIPYADPGYARLRGAIAVDTAAATRLDGMFALHPSLAETGRLYAQGQALFVHAAASPYSDRSHFDGQNVLETGGSAPYQVKDGWLNRLVAQLPHRQEAIAFAPTVPMALRGPAEVASYAPSSLPQASDDLLLRVARLYEGDAQLHALWTSAMDTRGVAMDSGNNRPRLDGASLGKLAAGFLARQDGPRIAMIETGGWDTHSAQNNRLAAQLKNLDALIAALHDGLGDAWSQTVVLVATEFGRTAAANGTGGTDHGTGAVAMLMGGAVQGGRVLADWPGLQPGQLLENRDLKPTTSVDALIASAAGECFGIDPQRLARNLFPEGHALPGGAPARSLPPLLRA</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="65" xmlns="http://uniprot.org/uniprot">
    <accession>A9BLS4</accession>
    <name>A9BLS4_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">O-Methyltransferase involved in polyketide biosynthesis-like protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_4232</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX36863.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012206035.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_4232"/>
    <dbReference type="PRIDE" id="A9BLS4"/>
    <dbReference type="EnsemblBacteria" id="ABX36863">
        <property type="protein sequence ID" value="ABX36863"/>
        <property type="gene ID" value="Daci_4232"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_4232"/>
    <dbReference type="eggNOG" id="COG3315">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_069348_0_0_4"/>
    <dbReference type="OMA" id="AYMLDRW"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0008168">
        <property type="term" value="F:methyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0032259">
        <property type="term" value="P:methylation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.150">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007213">
        <property type="entry name" value="Ppm1/Ppm2/Tcmp"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029063">
        <property type="entry name" value="SAM-dependent_MTases_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04072">
        <property type="entry name" value="LCM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53335">
        <property type="entry name" value="SSF53335"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-0489">Methyltransferase</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0808">Transferase</keyword>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="1"/>
            <end position="29"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX36863.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="295" mass="32984" checksum="1CD13ADAA704AB18" modified="2008-01-15" version="1">MPEPLAPSAGPAFTDAPPSTPRQEKLSDVSETLRIPLTARALGDRLFPGMAVSDAHALDTLTQLGDDGSRWLQDRQSIYGVLARTHCFRALAQDFLRRQPQGHVVNLGCGLSDYFQWLDNGQMHMTDADLGPVVALRRRLLPWQSERQEIREFDLADADWWQRLGLPADRSGPAVFMMAEGVSMYLQKEQIQALWTTFAQCSPPGSELVFDAMCWLAAGRASQHPSVRLTQAQFHWGLRREADLAQAHPRLQLVAAHQVMEGYGPPYSLVGPAFRWTFGVHFYAIYQLKSVETAA</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="65" xmlns="http://uniprot.org/uniprot">
    <accession>A9BLU0</accession>
    <name>A9BLU0_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Secretion protein HlyD family protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ordered locus">Daci_4248</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="6" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX36879.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012206051.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_4248"/>
    <dbReference type="PRIDE" id="A9BLU0"/>
    <dbReference type="EnsemblBacteria" id="ABX36879">
        <property type="protein sequence ID" value="ABX36879"/>
        <property type="gene ID" value="Daci_4248"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_4248"/>
    <dbReference type="eggNOG" id="COG1566">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_018816_15_1_4"/>
    <dbReference type="OMA" id="VYIDANF"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR032317">
        <property type="entry name" value="HlyD_D23"/>
    </dbReference>
    <dbReference type="Pfam" id="PF16576">
        <property type="entry name" value="HlyD_D23"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0175">Coiled coil</keyword>
    <keyword evidence="3" id="KW-0472">Membrane</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="3" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="3">
        <location>
            <begin position="41"/>
            <end position="62"/>
        </location>
    </feature>
    <feature type="domain" description="HlyD_D23" evidence="4">
        <location>
            <begin position="80"/>
            <end position="322"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="1"/>
            <end position="30"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="2">
        <location>
            <begin position="373"/>
            <end position="397"/>
        </location>
    </feature>
    <feature type="coiled-coil region" evidence="1">
        <location>
            <begin position="113"/>
            <end position="177"/>
        </location>
    </feature>
    <feature type="coiled-coil region" evidence="1">
        <location>
            <begin position="214"/>
            <end position="241"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Pro residues" evidence="2">
        <location>
            <begin position="382"/>
            <end position="397"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Coils"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="4">
        <source>
            <dbReference type="Pfam" id="PF16576"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="ABX36879.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="397" mass="41710" checksum="C525E506268E6602" modified="2008-01-15" version="1">MSDSENSNGGTAASASPAPAPAAAPSPSPSPKLIKPSLRSVLVMLVVALAGVLLVLRAWNLFPFAGTVVSTDNAYVRGAVTVLAPQVSGYVTEVLVQDYENVKAGQPLVRIDARTYEAAQAQAQAQLANARAQLANADQTQAQNRATLGASRAGLAAAQAESDRAAAELQRVQALSERGSVSLNERDKVRATARLAATNVAKAQADIEINAQKIKATTVNRASLEAQVQMAEAQLRQAQINLDNTVVHAPGDGQVSEVGVRRGQYVTAGSQLMYVVPHTLWVVANFKETQTAQVRIGQAVRFSVDALGGAHLTGRVLEIAPATGSEFSVLKADNATGNFTKVVQRLPVKIAIDPDQELAARLRAGMSVVVRLDTAQPEPQPAQQPAQQPAPQPEARP</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="64" xmlns="http://uniprot.org/uniprot">
    <accession>A9BLZ7</accession>
    <name>A9BLZ7_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Endonuclease/exonuclease/phosphatase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ordered locus">Daci_4713</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="5" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX37342.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_4713"/>
    <dbReference type="PRIDE" id="A9BLZ7"/>
    <dbReference type="EnsemblBacteria" id="ABX37342">
        <property type="protein sequence ID" value="ABX37342"/>
        <property type="gene ID" value="Daci_4713"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_4713"/>
    <dbReference type="eggNOG" id="COG2374">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_262792_0_0_4"/>
    <dbReference type="OMA" id="CASMSIA"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004519">
        <property type="term" value="F:endonuclease activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004527">
        <property type="term" value="F:exonuclease activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.60.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036691">
        <property type="entry name" value="Endo/exonu/phosph_ase_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR026442">
        <property type="entry name" value="IPTL_CTERM"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR032812">
        <property type="entry name" value="SbsA_Ig"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13205">
        <property type="entry name" value="Big_5"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF18203">
        <property type="entry name" value="IPTL-CTERM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56219">
        <property type="entry name" value="SSF56219"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR04174">
        <property type="entry name" value="IPTL_CTERM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-0255">Endonuclease</keyword>
    <keyword evidence="4" id="KW-0269">Exonuclease</keyword>
    <keyword evidence="4" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="4" id="KW-0540">Nuclease</keyword>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="6"/>
            <end position="27"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="39"/>
            <end position="58"/>
        </location>
    </feature>
    <feature type="domain" description="Big_5" evidence="2">
        <location>
            <begin position="274"/>
            <end position="380"/>
        </location>
    </feature>
    <feature type="domain" description="IPTL-CTERM" evidence="3">
        <location>
            <begin position="1255"/>
            <end position="1282"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF13205"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="3">
        <source>
            <dbReference type="Pfam" id="PF18203"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="ABX37342.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="1284" mass="132257" checksum="8E3055B741976CAE" modified="2008-01-15" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="58" xmlns="http://uniprot.org/uniprot">
    <accession>A9BM12</accession>
    <name>A9BM12_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Daci_4728</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="4" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX37357.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012206527.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_4728"/>
    <dbReference type="PRIDE" id="A9BM12"/>
    <dbReference type="EnsemblBacteria" id="ABX37357">
        <property type="protein sequence ID" value="ABX37357"/>
        <property type="gene ID" value="Daci_4728"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_4728"/>
    <dbReference type="eggNOG" id="COG1555">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_052011_4_1_4"/>
    <dbReference type="OMA" id="AFGHAYA"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010994">
        <property type="entry name" value="RuvA_2-like"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF47781">
        <property type="entry name" value="SSF47781"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="2">
        <location>
            <begin position="1"/>
            <end position="20"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5002735801" evidence="2">
        <location>
            <begin position="21"/>
            <end position="136"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="1">
        <location>
            <begin position="76"/>
            <end position="136"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="1">
        <location>
            <begin position="96"/>
            <end position="116"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ABX37357.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="136" mass="14053" checksum="36CC2571A71BBE68" modified="2008-01-15" version="1">MFRKLMAGFIALLWSVMALAAVEVNKANEAELTSIKGIGPAMSARILEERKSSAFKDWPDFIARVKGVGEPTAAKFSGEGLTVNGASYKGQGAKPDAKDTAAKDAKDTKDTAAKGAKPTKDQAAKPATPAKAGAAS</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="90" xmlns="http://uniprot.org/uniprot">
    <accession>A9BM53</accession>
    <name>A9BM53_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="5">Amidophosphoribosyltransferase</fullName>
            <shortName evidence="5">ATase</shortName>
            <ecNumber evidence="5">2.4.2.14</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="5">Glutamine phosphoribosylpyrophosphate amidotransferase</fullName>
            <shortName evidence="5">GPATase</shortName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="5" type="primary">purF</name>
        <name evidence="11" type="ordered locus">Daci_4769</name>
    </gene>
    <organism evidence="11 12">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="11 12" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="12">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="12" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="12">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="5">Catalyzes the formation of phosphoribosylamine from phosphoribosylpyrophosphate (PRPP) and glutamine.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="5 6">
            <text>5-phospho-beta-D-ribosylamine + diphosphate + L-glutamate = 5-phospho-alpha-D-ribose 1-diphosphate + H2O + L-glutamine</text>
            <dbReference type="Rhea" id="RHEA:14905"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:29985"/>
            <dbReference type="ChEBI" id="CHEBI:33019"/>
            <dbReference type="ChEBI" id="CHEBI:58017"/>
            <dbReference type="ChEBI" id="CHEBI:58359"/>
            <dbReference type="ChEBI" id="CHEBI:58681"/>
            <dbReference type="EC" id="2.4.2.14"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="5 8">
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </cofactor>
        <text evidence="5 8">Binds 1 Mg(2+) ion per subunit.</text>
    </comment>
    <comment type="pathway">
        <text evidence="1 5 6">Purine metabolism; IMP biosynthesis via de novo pathway; N(1)-(5-phospho-D-ribosyl)glycinamide from 5-phospho-alpha-D-ribose 1-diphosphate: step 1/2.</text>
    </comment>
    <comment type="similarity">
        <text evidence="2 5 6">In the C-terminal section; belongs to the purine/pyrimidine phosphoribosyltransferase family.</text>
    </comment>
    <comment type="caution">
        <text evidence="5">Lacks conserved residue(s) required for the propagation of feature annotation.</text>
    </comment>
    <dbReference type="EC" id="2.4.2.14" evidence="5"/>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX37398.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012206568.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_4769"/>
    <dbReference type="MEROPS" id="C44.001"/>
    <dbReference type="PRIDE" id="A9BM53"/>
    <dbReference type="EnsemblBacteria" id="ABX37398">
        <property type="protein sequence ID" value="ABX37398"/>
        <property type="gene ID" value="Daci_4769"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_4769"/>
    <dbReference type="eggNOG" id="COG0034">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_022389_2_1_4"/>
    <dbReference type="OMA" id="ENAQPTF"/>
    <dbReference type="UniPathway" id="UPA00074">
        <property type="reaction ID" value="UER00124"/>
    </dbReference>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004044">
        <property type="term" value="F:amidophosphoribosyltransferase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000287">
        <property type="term" value="F:magnesium ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006189">
        <property type="term" value="P:'de novo' IMP biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006541">
        <property type="term" value="P:glutamine metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009113">
        <property type="term" value="P:purine nucleobase biosynthetic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd00715">
        <property type="entry name" value="GPATase_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="CDD" id="cd06223">
        <property type="entry name" value="PRTases_typeI"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.2020">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.60.20.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01931">
        <property type="entry name" value="PurF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017932">
        <property type="entry name" value="GATase_2_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029055">
        <property type="entry name" value="Ntn_hydrolases_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000836">
        <property type="entry name" value="PRibTrfase_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029057">
        <property type="entry name" value="PRTase-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005854">
        <property type="entry name" value="PurF"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035584">
        <property type="entry name" value="PurF_N"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13537">
        <property type="entry name" value="GATase_7"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00156">
        <property type="entry name" value="Pribosyltran"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF000485">
        <property type="entry name" value="Amd_phspho_trans"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF53271">
        <property type="entry name" value="SSF53271"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF56235">
        <property type="entry name" value="SSF56235"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01134">
        <property type="entry name" value="purF"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51278">
        <property type="entry name" value="GATASE_TYPE_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-0315">Glutamine amidotransferase</keyword>
    <keyword evidence="5 6 11" id="KW-0328">Glycosyltransferase</keyword>
    <keyword evidence="5 8" id="KW-0460">Magnesium</keyword>
    <keyword evidence="5 8" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="4 5 6" id="KW-0658">Purine biosynthesis</keyword>
    <keyword evidence="12" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 5 6" id="KW-0808">Transferase</keyword>
    <feature type="domain" description="Glutamine amidotransferase type-2" evidence="10">
        <location>
            <begin position="2"/>
            <end position="233"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="9">
        <location>
            <begin position="474"/>
            <end position="502"/>
        </location>
    </feature>
    <feature type="compositionally biased region" description="Basic and acidic residues" evidence="9">
        <location>
            <begin position="474"/>
            <end position="489"/>
        </location>
    </feature>
    <feature type="active site" description="Nucleophile" evidence="5 7">
        <location>
            <position position="2"/>
        </location>
    </feature>
    <feature type="binding site" evidence="5 8">
        <location>
            <position position="302"/>
        </location>
        <ligand>
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="5 8">
        <location>
            <position position="364"/>
        </location>
        <ligand>
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </ligand>
    </feature>
    <feature type="binding site" evidence="5 8">
        <location>
            <position position="365"/>
        </location>
        <ligand>
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00005209"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00010138"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022679"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022755"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01931"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="PIRNR" id="PIRNR000485"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="PIRSR" id="PIRSR000485-1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="PIRSR" id="PIRSR000485-2"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="9">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="10">
        <source>
            <dbReference type="PROSITE" id="PS51278"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="EMBL" id="ABX37398.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="502" mass="54554" checksum="8335D9589A70D385" modified="2008-01-15" version="1">MCGIVGVVSTAPVNQLIYDALLLLQHRGQDAAGIVTQQERKFFMHKAKGMVRDVFRTRNMRALPGTVGLGQVRYPTAGNATSEEEAQPFYVNAPFGIVMVHNGNLTNAKQLREELSDTDHRHTNTESDSEVLLNVLAHELARASSGAPLKSEDVFQAVSAVHKRIKGSYAVIALIAGYGLLAFRDPFGIRPLCMGRGADGSVMLASESVALEGTLHQLERDVAPGEAVFVHSDGQVETRQCSEKSELHPCVFEYVYLARPDSVLDGISVYQARLNMGETLAKRVVSTVPPNEIDAIIPIPESSRPSAMQLAQLLGIPYREGFVKNRYVGRTFIMPGQSSRKKSVRQKLNAIGSEFKGRKVLLVDDSIVRGTTSKEIVQMARDAGAVKVYLASAAPPVRHPNVYGIDMPTRAELVAHGRTVEEIRQVIGADALIYQDVAAMKQTVGKINPQVQGFEASCFDGVYITGDISEDEVTALNEGRNRGGEEESSDASRLSLPNAQEA</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="65" xmlns="http://uniprot.org/uniprot">
    <accession>A9BMB0</accession>
    <name>A9BMB0_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="3">AMP-dependent synthetase and ligase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Daci_4826</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="4" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX37455.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012206625.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_4826"/>
    <dbReference type="PRIDE" id="A9BMB0"/>
    <dbReference type="EnsemblBacteria" id="ABX37455">
        <property type="protein sequence ID" value="ABX37455"/>
        <property type="gene ID" value="Daci_4826"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_4826"/>
    <dbReference type="eggNOG" id="COG0318">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_000022_59_7_4"/>
    <dbReference type="OMA" id="TMTTIQL"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016874">
        <property type="term" value="F:ligase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.300.30">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.12780">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR025110">
        <property type="entry name" value="AMP-bd_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR045851">
        <property type="entry name" value="AMP-bd_C_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020845">
        <property type="entry name" value="AMP-binding_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000873">
        <property type="entry name" value="AMP-dep_Synth/Lig"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR042099">
        <property type="entry name" value="ANL_N_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00501">
        <property type="entry name" value="AMP-binding"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF13193">
        <property type="entry name" value="AMP-binding_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00455">
        <property type="entry name" value="AMP_BINDING"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-0436">Ligase</keyword>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="AMP-binding" evidence="1">
        <location>
            <begin position="15"/>
            <end position="417"/>
        </location>
    </feature>
    <feature type="domain" description="AMP-binding_C" evidence="2">
        <location>
            <begin position="426"/>
            <end position="501"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF00501"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="Pfam" id="PF13193"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ABX37455.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="520" mass="56844" checksum="E9B585561FD1AB3C" modified="2008-01-15" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="55" xmlns="http://uniprot.org/uniprot">
    <accession>A9BMC2</accession>
    <name>A9BMC2_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Addiction module toxin, RelE/StbE family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_4838</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX37467.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012206637.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_4838"/>
    <dbReference type="PRIDE" id="A9BMC2"/>
    <dbReference type="EnsemblBacteria" id="ABX37467">
        <property type="protein sequence ID" value="ABX37467"/>
        <property type="gene ID" value="Daci_4838"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_4838"/>
    <dbReference type="eggNOG" id="COG3041">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_161929_4_1_4"/>
    <dbReference type="OMA" id="DHRECHV"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.2310.20">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007712">
        <property type="entry name" value="RelE/ParE_toxin"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR035093">
        <property type="entry name" value="RelE/ParE_toxin_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004386">
        <property type="entry name" value="Toxin_YafQ-like"/>
    </dbReference>
    <dbReference type="Pfam" id="PF15738">
        <property type="entry name" value="YafQ_toxin"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF143011">
        <property type="entry name" value="SSF143011"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR02385">
        <property type="entry name" value="RelE_StbE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-1277">Toxin-antitoxin system</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022649"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX37467.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="111" mass="12567" checksum="C464C184D5B5E289" modified="2008-01-15" version="1">MAGKKGYRLRTIAYTKTFKKDYQRMAASGRYDMTLVNQVGGLLIAHTAQQVLSAQWSDHALIADDEWDAGDRDIHLGGDFLLIYRIDPHPEAKDMEIVIFKRLGTHSDLFG</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="72" xmlns="http://uniprot.org/uniprot">
    <accession>A9BMG3</accession>
    <name>A9BMG3_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="5">Inorganic pyrophosphatase</fullName>
            <ecNumber evidence="5">3.6.1.1</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="5">Pyrophosphate phospho-hydrolase</fullName>
            <shortName evidence="5">PPase</shortName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="5" type="primary">ppa</name>
        <name evidence="6" type="ordered locus">Daci_4879</name>
    </gene>
    <organism evidence="6 7">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="6 7" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="7" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="7">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="5">Catalyzes the hydrolysis of inorganic pyrophosphate (PPi) forming two phosphate ions.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="5">
            <text>diphosphate + H2O = H(+) + 2 phosphate</text>
            <dbReference type="Rhea" id="RHEA:24576"/>
            <dbReference type="ChEBI" id="CHEBI:15377"/>
            <dbReference type="ChEBI" id="CHEBI:15378"/>
            <dbReference type="ChEBI" id="CHEBI:33019"/>
            <dbReference type="ChEBI" id="CHEBI:43474"/>
            <dbReference type="EC" id="3.6.1.1"/>
        </reaction>
    </comment>
    <comment type="cofactor">
        <cofactor evidence="1 5">
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
        </cofactor>
    </comment>
    <comment type="subunit">
        <text evidence="5">Homohexamer.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="5">Cytoplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="5">Belongs to the PPase family.</text>
    </comment>
    <dbReference type="EC" id="3.6.1.1" evidence="5"/>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX37508.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012206678.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="SMR" id="A9BMG3"/>
    <dbReference type="STRING" id="398578.Daci_4879"/>
    <dbReference type="PRIDE" id="A9BMG3"/>
    <dbReference type="EnsemblBacteria" id="ABX37508">
        <property type="protein sequence ID" value="ABX37508"/>
        <property type="gene ID" value="Daci_4879"/>
    </dbReference>
    <dbReference type="GeneID" id="60689223"/>
    <dbReference type="KEGG" id="dac:Daci_4879"/>
    <dbReference type="eggNOG" id="COG0221">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_073198_1_0_4"/>
    <dbReference type="OMA" id="DEPTFPG"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005737">
        <property type="term" value="C:cytoplasm"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004427">
        <property type="term" value="F:inorganic diphosphatase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0000287">
        <property type="term" value="F:magnesium ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006796">
        <property type="term" value="P:phosphate-containing compound metabolic process"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd00412">
        <property type="entry name" value="pyrophosphatase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.80.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00209">
        <property type="entry name" value="Inorganic_PPase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008162">
        <property type="entry name" value="Pyrophosphatase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036649">
        <property type="entry name" value="Pyrophosphatase_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR10286">
        <property type="entry name" value="PTHR10286"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00719">
        <property type="entry name" value="Pyrophosphatase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50324">
        <property type="entry name" value="SSF50324"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-0963">Cytoplasm</keyword>
    <keyword evidence="3 5 6" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="4 5" id="KW-0460">Magnesium</keyword>
    <keyword evidence="2 5" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="7" id="KW-1185">Reference proteome</keyword>
    <feature type="binding site" evidence="5">
        <location>
            <position position="30"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <position position="44"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <position position="56"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <position position="66"/>
        </location>
        <ligand>
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
            <label>1</label>
        </ligand>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <position position="71"/>
        </location>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <position position="103"/>
        </location>
        <ligand>
            <name>Mg(2+)</name>
            <dbReference type="ChEBI" id="CHEBI:18420"/>
            <label>1</label>
        </ligand>
    </feature>
    <feature type="binding site" evidence="5">
        <location>
            <position position="142"/>
        </location>
        <ligand>
            <name>substrate</name>
        </ligand>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001946"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022842"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00209"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="EMBL" id="ABX37508.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="175" mass="19323" checksum="97DF2A6D1C1A58F7" modified="2008-01-15" version="1">MSFDKVTPGKNAPETFNVVIEISANSDPIKYEVDKESGAVFVDRFMGTAMHYPANYGYVPQTLSGDGDPVDVLVMTPFPLPPGVVVACRPIGILLMEDESGVDGKVLAVPTQKLLPAYDKINTLEDIHEITLKQIQHFFEHYKDLEKGKWVKVLGWKGVDEAKKEVVDGIANYKG</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="90" xmlns="http://uniprot.org/uniprot">
    <accession>A9BML4</accession>
    <name>A9BML4_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="2 7 8">Transcription elongation factor GreA</fullName>
        </recommendedName>
        <alternativeName>
            <fullName evidence="7">Transcript cleavage factor GreA</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="7" type="primary">greA</name>
        <name evidence="11" type="ordered locus">Daci_4930</name>
    </gene>
    <organism evidence="11 12">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="11 12" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="12">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="12" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="12">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="6 7 8">Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus. GreA releases sequences of 2 to 3 nucleotides.</text>
    </comment>
    <comment type="similarity">
        <text evidence="1 7 8">Belongs to the GreA/GreB family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX37559.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012206729.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_4930"/>
    <dbReference type="PRIDE" id="A9BML4"/>
    <dbReference type="EnsemblBacteria" id="ABX37559">
        <property type="protein sequence ID" value="ABX37559"/>
        <property type="gene ID" value="Daci_4930"/>
    </dbReference>
    <dbReference type="GeneID" id="60689274"/>
    <dbReference type="KEGG" id="dac:Daci_4930"/>
    <dbReference type="eggNOG" id="COG0782">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_101379_2_0_4"/>
    <dbReference type="OMA" id="TWLTQEA"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003677">
        <property type="term" value="F:DNA binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0070063">
        <property type="term" value="F:RNA polymerase binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003746">
        <property type="term" value="F:translation elongation factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0032784">
        <property type="term" value="P:regulation of DNA-templated transcription, elongation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.287.180">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.10.50.30">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00105">
        <property type="entry name" value="GreA_GreB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036953">
        <property type="entry name" value="GreA/GreB_C_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018151">
        <property type="entry name" value="TF_GreA/GreB_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006359">
        <property type="entry name" value="Tscrpt_elong_fac_GreA"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR028624">
        <property type="entry name" value="Tscrpt_elong_fac_GreA/B"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001437">
        <property type="entry name" value="Tscrpt_elong_fac_GreA/B_C"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR023459">
        <property type="entry name" value="Tscrpt_elong_fac_GreA/B_fam"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR022691">
        <property type="entry name" value="Tscrpt_elong_fac_GreA/B_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036805">
        <property type="entry name" value="Tscrpt_elong_fac_GreA/B_N_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30437">
        <property type="entry name" value="PTHR30437"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01272">
        <property type="entry name" value="GreA_GreB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03449">
        <property type="entry name" value="GreA_GreB_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF006092">
        <property type="entry name" value="GreA_GreB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46557">
        <property type="entry name" value="SSF46557"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01462">
        <property type="entry name" value="greA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00829">
        <property type="entry name" value="GREAB_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4 7 8" id="KW-0238">DNA-binding</keyword>
    <keyword evidence="11" id="KW-0251">Elongation factor</keyword>
    <keyword evidence="11" id="KW-0648">Protein biosynthesis</keyword>
    <keyword evidence="12" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="5 7 8" id="KW-0804">Transcription</keyword>
    <keyword evidence="3 7 8" id="KW-0805">Transcription regulation</keyword>
    <feature type="domain" description="GreA_GreB_N" evidence="10">
        <location>
            <begin position="4"/>
            <end position="74"/>
        </location>
    </feature>
    <feature type="domain" description="GreA_GreB" evidence="9">
        <location>
            <begin position="83"/>
            <end position="157"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00008213"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00013729"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023015"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023125"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023163"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00024916"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00105"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="RuleBase" id="RU000556"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="9">
        <source>
            <dbReference type="Pfam" id="PF01272"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="10">
        <source>
            <dbReference type="Pfam" id="PF03449"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="EMBL" id="ABX37559.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="158" mass="17037" checksum="AE9F62C3176537AD" modified="2008-01-15" version="1">MATIPITKRGAEKLKDELHRLKTVERPSIIQAIAEARAQGDLSENAEYEAAKDRQGFIEGRIAEVESKLSAAQIIDPSSVDAGGRVVFGATVELEDEDSGDTVKYQIVGEDEADLKLGLINVSSPIARALIGKEEGDTAVVQAPGGERRYEVVSVRYL</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2020-02-26" version="28" xmlns="http://uniprot.org/uniprot">
    <accession>A9BMS0</accession>
    <name>A9BMS0_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Daci_4986</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="2" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX37615.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_4986"/>
    <dbReference type="EnsemblBacteria" id="ABX37615">
        <property type="protein sequence ID" value="ABX37615"/>
        <property type="gene ID" value="Daci_4986"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_4986"/>
    <dbReference type="HOGENOM" id="CLU_2179534_0_0_4"/>
    <dbReference type="OMA" id="WEISHPA"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ABX37615.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="109" mass="11462" checksum="E05B5371D12EC00B" modified="2008-01-15" version="1">MPAAAAASSISMGVSAVAMELRRSHFQPLLGQNFSVAGEAAELRLVALSALPHALQSDRSFSALFELSRPGALPQNTWEIAHPALGRHAVFLSPSDAQGVLLEAVFNRG</sequence>
</entry>
<entry dataset="Swiss-Prot" created="2009-03-24" modified="2022-08-03" version="75" xmlns="http://uniprot.org/uniprot">
    <accession>A9BMU9</accession>
    <name>DER_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">GTPase Der</fullName>
        </recommendedName>
        <alternativeName>
            <fullName evidence="1">GTP-binding protein EngA</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="1" type="primary">der</name>
        <name type="synonym">engA</name>
        <name type="ordered locus">Daci_5015</name>
    </gene>
    <organism>
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference key="1">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain>DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="1">GTPase that plays an essential role in the late steps of ribosome biogenesis.</text>
    </comment>
    <comment type="subunit">
        <text evidence="1">Associates with the 50S ribosomal subunit.</text>
    </comment>
    <comment type="similarity">
        <text evidence="1">Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. EngA (Der) GTPase family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX37644.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012206814.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A9BMU9"/>
    <dbReference type="SMR" id="A9BMU9"/>
    <dbReference type="STRING" id="398578.Daci_5015"/>
    <dbReference type="PRIDE" id="A9BMU9"/>
    <dbReference type="EnsemblBacteria" id="ABX37644">
        <property type="protein sequence ID" value="ABX37644"/>
        <property type="gene ID" value="Daci_5015"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_5015"/>
    <dbReference type="eggNOG" id="COG1160">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_016077_6_2_4"/>
    <dbReference type="OMA" id="KFRFLEY"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005525">
        <property type="term" value="F:GTP binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0042254">
        <property type="term" value="P:ribosome biogenesis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.30.300.20">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.300">
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00195">
        <property type="entry name" value="GTPase_Der"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR031166">
        <property type="entry name" value="G_ENGA"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006073">
        <property type="entry name" value="GTP-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR016484">
        <property type="entry name" value="GTP-bd_EngA"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR032859">
        <property type="entry name" value="KH_dom-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR015946">
        <property type="entry name" value="KH_dom-like_a/b"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR027417">
        <property type="entry name" value="P-loop_NTPase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005225">
        <property type="entry name" value="Small_GTP-bd_dom"/>
    </dbReference>
    <dbReference type="Pfam" id="PF14714">
        <property type="entry name" value="KH_dom-like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01926">
        <property type="entry name" value="MMR_HSR1"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF006485">
        <property type="entry name" value="GTP-binding_EngA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00326">
        <property type="entry name" value="GTP1OBG"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52540">
        <property type="entry name" value="SSF52540"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR03594">
        <property type="entry name" value="GTPase_EngA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00231">
        <property type="entry name" value="small_GTP"/>
        <property type="match status" value="2"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51712">
        <property type="entry name" value="G_ENGA"/>
        <property type="match status" value="2"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword id="KW-0342">GTP-binding</keyword>
    <keyword id="KW-0547">Nucleotide-binding</keyword>
    <keyword id="KW-1185">Reference proteome</keyword>
    <keyword id="KW-0677">Repeat</keyword>
    <keyword id="KW-0690">Ribosome biogenesis</keyword>
    <feature type="chain" id="PRO_1000099115" description="GTPase Der">
        <location>
            <begin position="1"/>
            <end position="448"/>
        </location>
    </feature>
    <feature type="domain" description="EngA-type G 1">
        <location>
            <begin position="3"/>
            <end position="167"/>
        </location>
    </feature>
    <feature type="domain" description="EngA-type G 2">
        <location>
            <begin position="182"/>
            <end position="355"/>
        </location>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <begin position="9"/>
            <end position="16"/>
        </location>
        <ligand>
            <name>GTP</name>
            <dbReference type="ChEBI" id="CHEBI:37565"/>
            <label>1</label>
        </ligand>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <begin position="56"/>
            <end position="60"/>
        </location>
        <ligand>
            <name>GTP</name>
            <dbReference type="ChEBI" id="CHEBI:37565"/>
            <label>1</label>
        </ligand>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <begin position="119"/>
            <end position="122"/>
        </location>
        <ligand>
            <name>GTP</name>
            <dbReference type="ChEBI" id="CHEBI:37565"/>
            <label>1</label>
        </ligand>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <begin position="188"/>
            <end position="195"/>
        </location>
        <ligand>
            <name>GTP</name>
            <dbReference type="ChEBI" id="CHEBI:37565"/>
            <label>2</label>
        </ligand>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <begin position="235"/>
            <end position="239"/>
        </location>
        <ligand>
            <name>GTP</name>
            <dbReference type="ChEBI" id="CHEBI:37565"/>
            <label>2</label>
        </ligand>
    </feature>
    <feature type="binding site" evidence="1">
        <location>
            <begin position="300"/>
            <end position="303"/>
        </location>
        <ligand>
            <name>GTP</name>
            <dbReference type="ChEBI" id="CHEBI:37565"/>
            <label>2</label>
        </ligand>
    </feature>
    <evidence type="ECO:0000255" key="1">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00195"/>
        </source>
    </evidence>
    <sequence length="448" mass="49707" checksum="BE0445507B270856" modified="2008-01-15" version="1">MKPVIALVGRPNVGKSTLFNRLTKSRDAIVADFAGLTRDRHYGQGRQGKHEYIVIDTGGFEPDASSGIFKEMARQTQQAVAEADVVVFVVDARLGMSAQDHDIAKYLRRLGKPCVLVANKAEGMKEGVQLTEFYELGLGDVLPVSAAHGQGVRDLLDLALGQLNLPEPEEDDPFDDVAQKPIRLTVAGRPNVGKSTLINTWLGEERLVAFDMPGTTRDAISVPFERAGQKFELIDTAGLRRKGRVFEAIEKFSVVKTLQAIESANVVLLLIDATQGVTDQDAHIAGYVLESGRAVVLAVNKWDAVDDYQRQMLERSIETRLSFLKFAPMHFISAEKRQGLGPLWNSIIQAHKAATCKMPTPVLTRLLMEAVQFQTPKKTGIYRPKMRYAHQGGMNPPVIVIHGNSLEHVTEAYKRFLEGRFRKEFNLVGTPLRIELKTSHNPFADKDK</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="77" xmlns="http://uniprot.org/uniprot">
    <accession>A9BMY6</accession>
    <name>A9BMY6_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="11">TonB-dependent receptor</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="11" type="ordered locus">Daci_5052</name>
    </gene>
    <organism evidence="11 12">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="11 12" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="12">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="12" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="12">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="7">Cell outer membrane</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="1 7">Belongs to the TonB-dependent receptor family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX37681.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012206851.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_5052"/>
    <dbReference type="PRIDE" id="A9BMY6"/>
    <dbReference type="EnsemblBacteria" id="ABX37681">
        <property type="protein sequence ID" value="ABX37681"/>
        <property type="gene ID" value="Daci_5052"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_5052"/>
    <dbReference type="eggNOG" id="COG4771">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_008287_18_2_4"/>
    <dbReference type="OMA" id="TYNRIEE"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0009279">
        <property type="term" value="C:cell outer membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006811">
        <property type="term" value="P:ion transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="GO" id="GO:0071702">
        <property type="term" value="P:organic substance transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.170.130.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.170.20">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR039426">
        <property type="entry name" value="BtuB-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012910">
        <property type="entry name" value="Plug_dom"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037066">
        <property type="entry name" value="Plug_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000531">
        <property type="entry name" value="TonB-dep_rcpt_b-brl"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036942">
        <property type="entry name" value="TonB_rcpt_b-brl_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR010917">
        <property type="entry name" value="TonB_rcpt_CS"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30069">
        <property type="entry name" value="PTHR30069"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF07715">
        <property type="entry name" value="Plug"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00593">
        <property type="entry name" value="TonB_dep_Rec"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01156">
        <property type="entry name" value="TONB_DEPENDENT_REC_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="6" id="KW-0998">Cell outer membrane</keyword>
    <keyword evidence="4 7" id="KW-0472">Membrane</keyword>
    <keyword evidence="5 11" id="KW-0675">Receptor</keyword>
    <keyword evidence="12" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="2 8" id="KW-0732">Signal</keyword>
    <keyword evidence="3 7" id="KW-0798">TonB box</keyword>
    <feature type="signal peptide" evidence="8">
        <location>
            <begin position="1"/>
            <end position="32"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5002732337" evidence="8">
        <location>
            <begin position="33"/>
            <end position="726"/>
        </location>
    </feature>
    <feature type="domain" description="Plug" evidence="10">
        <location>
            <begin position="59"/>
            <end position="172"/>
        </location>
    </feature>
    <feature type="domain" description="TonB_dep_Rec" evidence="9">
        <location>
            <begin position="276"/>
            <end position="724"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00009810"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022729"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00023077"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023170"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="ARBA" id="ARBA00023237"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="RuleBase" id="RU003357"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="9">
        <source>
            <dbReference type="Pfam" id="PF00593"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="10">
        <source>
            <dbReference type="Pfam" id="PF07715"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="11">
        <source>
            <dbReference type="EMBL" id="ABX37681.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="12">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="726" mass="78305" checksum="D8DAD8B88DB8B8FD" modified="2008-01-15" version="1"> </sequence>
</entry>
<entry dataset="Swiss-Prot" created="2009-03-24" modified="2022-08-03" version="70" xmlns="http://uniprot.org/uniprot">
    <accession>A9BNJ3</accession>
    <name>RECO_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">DNA repair protein RecO</fullName>
        </recommendedName>
        <alternativeName>
            <fullName evidence="1">Recombination protein O</fullName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="1" type="primary">recO</name>
        <name type="ordered locus">Daci_5259</name>
    </gene>
    <organism>
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference key="1">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain>DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="1">Involved in DNA repair and RecF pathway recombination.</text>
    </comment>
    <comment type="similarity">
        <text evidence="1">Belongs to the RecO family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX37888.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012207058.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A9BNJ3"/>
    <dbReference type="SMR" id="A9BNJ3"/>
    <dbReference type="STRING" id="398578.Daci_5259"/>
    <dbReference type="PRIDE" id="A9BNJ3"/>
    <dbReference type="EnsemblBacteria" id="ABX37888">
        <property type="protein sequence ID" value="ABX37888"/>
        <property type="gene ID" value="Daci_5259"/>
    </dbReference>
    <dbReference type="GeneID" id="60689603"/>
    <dbReference type="KEGG" id="dac:Daci_5259"/>
    <dbReference type="eggNOG" id="COG1381">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_066645_0_0_4"/>
    <dbReference type="OMA" id="YVLHSRA"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006310">
        <property type="term" value="P:DNA recombination"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006281">
        <property type="term" value="P:DNA repair"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.20.1440.120">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="2.40.50.140">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00201">
        <property type="entry name" value="RecO"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR037278">
        <property type="entry name" value="ARFGAP/RecO"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR022572">
        <property type="entry name" value="DNA_rep/recomb_RecO_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012340">
        <property type="entry name" value="NA-bd_OB-fold"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003717">
        <property type="entry name" value="RecO"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR042242">
        <property type="entry name" value="RecO_C"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33991">
        <property type="entry name" value="PTHR33991"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02565">
        <property type="entry name" value="RecO_C"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF11967">
        <property type="entry name" value="RecO_N"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF50249">
        <property type="entry name" value="SSF50249"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF57863">
        <property type="entry name" value="SSF57863"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00613">
        <property type="entry name" value="reco"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword id="KW-0227">DNA damage</keyword>
    <keyword id="KW-0233">DNA recombination</keyword>
    <keyword id="KW-0234">DNA repair</keyword>
    <keyword id="KW-1185">Reference proteome</keyword>
    <feature type="chain" id="PRO_1000099376" description="DNA repair protein RecO">
        <location>
            <begin position="1"/>
            <end position="256"/>
        </location>
    </feature>
    <evidence type="ECO:0000255" key="1">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00201"/>
        </source>
    </evidence>
    <sequence length="256" mass="28000" checksum="4F9B96E7D0CA3EF3" modified="2008-01-15" version="1">MASAKRVSDEPAYVLHSYDWSESSLILEVFTRHRGRVALAAKGVKRPTSNFRPVLLPLQPLSLSYSLGGEGNAEIHTLKGAEWVGGHVMPQGDALMSGLYLNELLMRLLARDDPYAALFDIYAGVVRVLAGQHGDAIEPVLRTFELLLLRELGHLPALNEESATLAPLAEGRRYALVAEGGLRPALQGERAVLGAAQWQAIESALQARQAFNATLHVVAQPEQALALKPQLRALLQYHCGSPMLRTRQLMMDLQSL</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="58" xmlns="http://uniprot.org/uniprot">
    <accession>A9BNW0</accession>
    <name>A9BNW0_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="7">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ordered locus">Daci_5376</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="8" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the UPF0187 family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX38005.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012207174.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="PRIDE" id="A9BNW0"/>
    <dbReference type="EnsemblBacteria" id="ABX38005">
        <property type="protein sequence ID" value="ABX38005"/>
        <property type="gene ID" value="Daci_5376"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_5376"/>
    <dbReference type="eggNOG" id="COG3781">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_029790_4_2_4"/>
    <dbReference type="OMA" id="TDICGAC"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005254">
        <property type="term" value="F:chloride channel activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR021134">
        <property type="entry name" value="Bestrophin/UPF0187"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR044669">
        <property type="entry name" value="UPF0187"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33281">
        <property type="entry name" value="PTHR33281"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01062">
        <property type="entry name" value="Bestrophin"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5 6" id="KW-0472">Membrane</keyword>
    <keyword evidence="8" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 6" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="4 6" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="20"/>
            <end position="41"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="53"/>
            <end position="70"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00006514"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="7">
        <source>
            <dbReference type="EMBL" id="ABX38005.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="315" mass="35456" checksum="CF96C15C4D06F15E" modified="2008-01-15" version="1">MIVRDRPAGLRLFLILRGSVLQRIQVTLLVNIVFAAIITLVHGNLFDVKITVTPIPFTLIGLPLAIFLGFRNNTAYDRYWEGRKLWGEMVICARTLARQCQSLIVIDGDPDPARRSSDVRVRMVHRAIAFAHLLRTQLRGLHEDVAAGRWLVDKEWRQLQGLPLEQRCDALMMSMGRDLAQCVRRGEMDPCLAASMDKTFTRMTAAAASCERIRNTPMPFSYALLLHRTAYMYCFLLPFGLVDTTGFMTPFVVAIVAYTFYGLDALGDELEEPFGLESNDLPLDTICRSIEISLGCTLGETDLPAPLRPEGYRLT</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="78" xmlns="http://uniprot.org/uniprot">
    <accession>A9BP87</accession>
    <name>A9BP87_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="3">Transcriptional regulator, LysR family</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Daci_0004</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="4" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="1">Belongs to the LysR transcriptional regulatory family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX32651.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012201944.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_0004"/>
    <dbReference type="PRIDE" id="A9BP87"/>
    <dbReference type="EnsemblBacteria" id="ABX32651">
        <property type="protein sequence ID" value="ABX32651"/>
        <property type="gene ID" value="Daci_0004"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_0004"/>
    <dbReference type="eggNOG" id="COG0583">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_039613_6_4_4"/>
    <dbReference type="OMA" id="EPYIMLT"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003700">
        <property type="term" value="F:DNA-binding transcription factor activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="1.10.10.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005119">
        <property type="entry name" value="LysR_subst-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000847">
        <property type="entry name" value="Tscrpt_reg_HTH_LysR"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036388">
        <property type="entry name" value="WH-like_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036390">
        <property type="entry name" value="WH_DNA-bd_sf"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00126">
        <property type="entry name" value="HTH_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03466">
        <property type="entry name" value="LysR_substrate"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00039">
        <property type="entry name" value="HTHLYSR"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF46785">
        <property type="entry name" value="SSF46785"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50931">
        <property type="entry name" value="HTH_LYSR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="HTH lysR-type" evidence="2">
        <location>
            <begin position="3"/>
            <end position="60"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00009437"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="2">
        <source>
            <dbReference type="PROSITE" id="PS50931"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ABX32651.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="309" mass="34708" checksum="E4EF8BC2C5C5191C" modified="2008-01-15" version="1">MSLTLRQLKYFTAVAEVGRISHAALQLNISQSAVTTAVRELEEMLGQQLFERQPHGVELTRAGRRFLSHAYAVLSAADEAIRMPHEGVNVEGTLTIAATYTVLGYFLPHHLQRFEQLHPQIKVKVHEVVREAIEEGLITQQYDMGVLLTSNVVLRELSLETFFGSQRRLWVPAKHALLEKAEVTLADVAAEPYILLTVDEAAGTAMKYWSKTPYQPQIRLRTSSVEAVRSTVANGLGVTVLSDMVYRPWSLEGKRIETISLRDAVPTMNIGLGWKQGIEFSPAMTAFRDYFRQLFLEPVVHQGRRRPGG</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2021-09-29" version="70" xmlns="http://uniprot.org/uniprot">
    <accession>A9BPK1</accession>
    <name>A9BPK1_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="8">Urea ABC transporter, permease protein UrtC</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="8" type="ordered locus">Daci_0222</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="9" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX32868.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012202161.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_0222"/>
    <dbReference type="EnsemblBacteria" id="ABX32868">
        <property type="protein sequence ID" value="ABX32868"/>
        <property type="gene ID" value="Daci_0222"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_0222"/>
    <dbReference type="eggNOG" id="COG4177">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_031365_0_0_4"/>
    <dbReference type="OMA" id="FKIFAFC"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0015658">
        <property type="term" value="F:branched-chain amino acid transmembrane transporter activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="CDD" id="cd06581">
        <property type="entry name" value="TM_PBP1_LivM_like"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001851">
        <property type="entry name" value="ABC_transp_permease"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017778">
        <property type="entry name" value="ABC_transptr_urea_perm_UrtC"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR043428">
        <property type="entry name" value="LivM-like"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30482">
        <property type="entry name" value="PTHR30482"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30482:SF4">
        <property type="entry name" value="PTHR30482:SF4"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02653">
        <property type="entry name" value="BPD_transp_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR03408">
        <property type="entry name" value="urea_trans_UrtC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="5 7" id="KW-0472">Membrane</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3 7" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="4 7" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="12"/>
            <end position="31"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="43"/>
            <end position="72"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="121"/>
            <end position="144"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="151"/>
            <end position="174"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="200"/>
            <end position="219"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="240"/>
            <end position="267"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="287"/>
            <end position="311"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="7">
        <location>
            <begin position="323"/>
            <end position="347"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="6">
        <location>
            <begin position="363"/>
            <end position="396"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004141"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022692"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022989"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="ABX32868.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="396" mass="42675" checksum="019EF18BEBE357D1" modified="2008-01-15" version="1">MQALKAWIQRYQLASLVLLTVLLAVVLPLALDIFRLNLVGKYLTYAFVAIGLVMVWGYGGVLSLGQGVFFGLGGYAMAMFLKLEASDPISTKIQSTPGIPDFMDWNQLTELPSFWLPFKSLPFSLAAVIAVPTLLAWLISFAMFKRRVGGVYFAIITQAVALIVTVLIIGQQGYTGGVNGMTDLKTLWGWDTRTDSAKYILYYVCVALLIGAIVLCRWIQTGKVGTLLLAMRDKEDRVRFSGYDVANFKVFVFCLAAALSGIGGAMFTLQVGFMSPSFVGIVPSIEMVIYAAVGGRMSLVGAVYGTLLVNAGKTYFSESFPDLWLFLMAGLFIGVTMAFPMGLAGLWESRIVPWWNSRRKGTAPAAAQGAQAAPAPAPAATKPTSALSEGMGRQGA</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2021-06-02" version="41" xmlns="http://uniprot.org/uniprot">
    <accession>A9BPL2</accession>
    <name>A9BPL2_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Daci_0233</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="2" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX32879.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012202172.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="ABX32879">
        <property type="protein sequence ID" value="ABX32879"/>
        <property type="gene ID" value="Daci_0233"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_0233"/>
    <dbReference type="eggNOG" id="COG4893">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_163897_0_0_4"/>
    <dbReference type="OMA" id="VWANTRV"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018696">
        <property type="entry name" value="DUF2195"/>
    </dbReference>
    <dbReference type="Pfam" id="PF09961">
        <property type="entry name" value="DUF2195"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ABX32879.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="114" mass="11942" checksum="049A3429E53DDCB5" modified="2008-01-15" version="1">MFGGSAFAAHADQITFQNDLSACVSITATKTSTESNVVWANTRVQLRKSIGECGCLSALATYTSSVNRGGVRQVLQEGLIDLGSGGERKLVLATDPALVANKEVRVRLACTGPL</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="42" xmlns="http://uniprot.org/uniprot">
    <accession>A9BPY2</accession>
    <name>A9BPY2_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Daci_0551</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="2" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX33197.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012202483.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="PRIDE" id="A9BPY2"/>
    <dbReference type="EnsemblBacteria" id="ABX33197">
        <property type="protein sequence ID" value="ABX33197"/>
        <property type="gene ID" value="Daci_0551"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_0551"/>
    <dbReference type="eggNOG" id="ENOG50302YD">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_1912488_0_0_4"/>
    <dbReference type="OMA" id="AIAFDQH"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ABX33197.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="150" mass="16760" checksum="B21A70EAAFC0B172" modified="2008-01-15" version="1">MDLQYQLKAGSYCLYDMRETPSAITGERRCRLRTELVAIAFDLVTGQVHEHGSPTRIHAWALCTRRRLRAAGDWDQADSIVVVSGPLPVDEINKCLGIRGYCRRMFQRLASLPHGKLQPHAHAHAHGAYGAYGAHAGRHQSHQGQQRRAA</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="57" xmlns="http://uniprot.org/uniprot">
    <accession>A9BQ20</accession>
    <name>A9BQ20_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="5">Creatininase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="5" type="ordered locus">Daci_0589</name>
    </gene>
    <organism evidence="5 6">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="5 6" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="6" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="6">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="similarity">
        <text evidence="4">Belongs to the creatininase superfamily.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX33235.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012202521.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_0589"/>
    <dbReference type="PRIDE" id="A9BQ20"/>
    <dbReference type="EnsemblBacteria" id="ABX33235">
        <property type="protein sequence ID" value="ABX33235"/>
        <property type="gene ID" value="Daci_0589"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_0589"/>
    <dbReference type="eggNOG" id="COG1402">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_055029_0_0_4"/>
    <dbReference type="OMA" id="PCFLWSG"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016787">
        <property type="term" value="F:hydrolase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0046872">
        <property type="term" value="F:metal ion binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.10310">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR024087">
        <property type="entry name" value="Creatininase-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR003785">
        <property type="entry name" value="Creatininase/forma_Hydrolase"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR35005">
        <property type="entry name" value="PTHR35005"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF02633">
        <property type="entry name" value="Creatininase"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF102215">
        <property type="entry name" value="SSF102215"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="2" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="1" id="KW-0479">Metal-binding</keyword>
    <keyword evidence="6" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0862">Zinc</keyword>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022723"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022833"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00024029"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="EMBL" id="ABX33235.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="6">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="287" mass="30546" checksum="35243E057D0DD924" modified="2008-01-15" version="1">MQDSPPEQISPGAWPSRWWAEASARDFAQAQASGLAAETIAVLPVAAVEQHGPHLPLSVDARLLQGVIDAALPLLPPELPALFLPPQNIGFSVEHQSFAGTLTLSPATVIALWTELGACVARAGVRRLLLLNGHGGQVSVMDIVARELRMRHGLLVYSSSWFGLVDDAANAHFSAHEHRFGIHGGEVETSMMLHLAPESVRMEHARDFHSTSEDRAQRHALLGNGRSAKMGWAIEDYNVCGAVGNAAGATAERGALMVEASARGLVRLLSEIVALPADTVGRAPEPL</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="67" xmlns="http://uniprot.org/uniprot">
    <accession>A9BQ64</accession>
    <name>A9BQ64_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="3 6">Flagellar basal body rod protein FlgB</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="8" type="ordered locus">Daci_0633</name>
    </gene>
    <organism evidence="8 9">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="8 9" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="9" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="9">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="5 6">Structural component of flagellum, the bacterial motility apparatus. Part of the rod structure of flagellar basal body.</text>
    </comment>
    <comment type="subunit">
        <text evidence="6">The basal body constitutes a major portion of the flagellar organelle and consists of a number of rings mounted on a central rod.</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1 6">Bacterial flagellum basal body</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2 6">Belongs to the flagella basal body rod proteins family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX33279.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_0633"/>
    <dbReference type="PRIDE" id="A9BQ64"/>
    <dbReference type="EnsemblBacteria" id="ABX33279">
        <property type="protein sequence ID" value="ABX33279"/>
        <property type="gene ID" value="Daci_0633"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_0633"/>
    <dbReference type="eggNOG" id="COG1815">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_125463_1_0_4"/>
    <dbReference type="OMA" id="EQHYEIS"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030694">
        <property type="term" value="C:bacterial-type flagellum basal body, rod"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0071973">
        <property type="term" value="P:bacterial-type flagellum-dependent cell motility"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001444">
        <property type="entry name" value="Flag_bb_rod_N"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR019776">
        <property type="entry name" value="Flagellar_basal_body_rod_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR006300">
        <property type="entry name" value="FlgB"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR30435:SF12">
        <property type="entry name" value="PTHR30435:SF12"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00460">
        <property type="entry name" value="Flg_bb_rod"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF002889">
        <property type="entry name" value="Rod_FlgB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR01396">
        <property type="entry name" value="FlgB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00588">
        <property type="entry name" value="FLAGELLA_BB_ROD"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="4 6" id="KW-0975">Bacterial flagellum</keyword>
    <keyword evidence="8" id="KW-0966">Cell projection</keyword>
    <keyword evidence="8" id="KW-0969">Cilium</keyword>
    <keyword evidence="8" id="KW-0282">Flagellum</keyword>
    <keyword evidence="9" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Flg_bb_rod" evidence="7">
        <location>
            <begin position="32"/>
            <end position="61"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004117"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00009677"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00014376"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00023143"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00024934"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="PIRNR" id="PIRNR002889"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="Pfam" id="PF00460"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="8">
        <source>
            <dbReference type="EMBL" id="ABX33279.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="160" mass="17366" checksum="441FDFE20A5B4DCD" modified="2008-01-15" version="1">MPQSVGCRHFVNRSPQIPEGEADMLDKMTERLDFQSKALVLRAERQRAIASNIANADTPGYVARDFNFREALTAVTSGPSPMTLASVSQGGHIPLPAAASGQSAQSHLGYSVQAQTNMDNNTVDLDRERANFVDNAVRYEATLRFLNGQAKTMLSAIQGQ</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2021-06-02" version="49" xmlns="http://uniprot.org/uniprot">
    <accession>A9BQ95</accession>
    <name>A9BQ95_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_0859</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX33505.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012202791.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="EnsemblBacteria" id="ABX33505">
        <property type="protein sequence ID" value="ABX33505"/>
        <property type="gene ID" value="Daci_0859"/>
    </dbReference>
    <dbReference type="GeneID" id="60685422"/>
    <dbReference type="KEGG" id="dac:Daci_0859"/>
    <dbReference type="eggNOG" id="COG1950">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_120441_2_1_4"/>
    <dbReference type="OMA" id="NALMFWA"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR007165">
        <property type="entry name" value="Phage_holin_4_2"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR37309">
        <property type="entry name" value="PTHR37309"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF04020">
        <property type="entry name" value="Phage_holin_4_2"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="1" id="KW-0472">Membrane</keyword>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="1" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="32"/>
            <end position="50"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="57"/>
            <end position="77"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="1">
        <location>
            <begin position="89"/>
            <end position="110"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX33505.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="115" mass="12147" checksum="194DDD8FD8C1D4A7" modified="2008-01-15" version="1">MKILIKWLLSAGALLVVAYLYGGVQVNSFSSAMIAALVIGLLNAVLRPILVVLTLPVTIVTVGLFLFVVNGLMFWAASGLLSGFHVAGFWAAMLGALIYSLLGLAIESLLARLFP</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="72" xmlns="http://uniprot.org/uniprot">
    <accession>A9BQV7</accession>
    <name>A9BQV7_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Short-chain dehydrogenase/reductase SDR</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Daci_0266</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="2" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX32912.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012202205.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_0266"/>
    <dbReference type="PRIDE" id="A9BQV7"/>
    <dbReference type="EnsemblBacteria" id="ABX32912">
        <property type="protein sequence ID" value="ABX32912"/>
        <property type="gene ID" value="Daci_0266"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_0266"/>
    <dbReference type="eggNOG" id="COG1028">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_010194_1_1_4"/>
    <dbReference type="OMA" id="VGTLGKQ"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016491">
        <property type="term" value="F:oxidoreductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036291">
        <property type="entry name" value="NAD(P)-bd_dom_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR020904">
        <property type="entry name" value="Sc_DH/Rdtase_CS"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR002347">
        <property type="entry name" value="SDR_fam"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00081">
        <property type="entry name" value="GDHRDH"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00080">
        <property type="entry name" value="SDRFAMILY"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF51735">
        <property type="entry name" value="SSF51735"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00061">
        <property type="entry name" value="ADH_SHORT"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ABX32912.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="257" mass="27254" checksum="A7FC5E123991C81B" modified="2008-01-15" version="1">MSVKALFNLTGKTALITGGSRGLGLQMAEALGEMGARLAITARKSDELAEAKAHLQGLGYQVETFTNDLQKFDTIPALVDDVLTRCGDIDILVNNAGATWGAKAEEYPDEAWNKVMNLNVSAPFFLTREVARRVMIPKGQGNVIITASVAAFKGTPPGMNTVAYNTSKAAAVHLARTLASEWGHYGIRVNSICPGFFPSKLANGLIDKLGDQLIARAPLRRIGGEEDLKGAVVYLASDASRHMTGQALVLDGGASLL</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="38" xmlns="http://uniprot.org/uniprot">
    <accession>A9BQY9</accession>
    <name>A9BQY9_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Daci_0298</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="2" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX32944.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_0298"/>
    <dbReference type="PRIDE" id="A9BQY9"/>
    <dbReference type="EnsemblBacteria" id="ABX32944">
        <property type="protein sequence ID" value="ABX32944"/>
        <property type="gene ID" value="Daci_0298"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_0298"/>
    <dbReference type="eggNOG" id="ENOG502ZW9W">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_172558_0_0_4"/>
    <dbReference type="OMA" id="QGCESAR"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR028968">
        <property type="entry name" value="Imm58"/>
    </dbReference>
    <dbReference type="Pfam" id="PF15581">
        <property type="entry name" value="Imm58"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ABX32944.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="93" mass="10863" checksum="D149D5D219CC424A" modified="2008-01-15" version="1">MIIYLSYSVVDKSITLSYSNQGCESARADIDNVISLIEREWRGLDMEQIKYKIKTASINKKEIDSQIKMENDLIWYGDVRFIFSSGRLVKVEY</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="90" xmlns="http://uniprot.org/uniprot">
    <accession>A9BR68</accession>
    <name>A9BR68_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="6">Lipoprotein signal peptidase</fullName>
            <ecNumber evidence="6">3.4.23.36</ecNumber>
        </recommendedName>
        <alternativeName>
            <fullName evidence="6">Prolipoprotein signal peptidase</fullName>
        </alternativeName>
        <alternativeName>
            <fullName evidence="6">Signal peptidase II</fullName>
            <shortName evidence="6">SPase II</shortName>
        </alternativeName>
    </protein>
    <gene>
        <name evidence="6" type="primary">lspA</name>
        <name evidence="9" type="ordered locus">Daci_0480</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="9 10" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="10" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="function">
        <text evidence="6 7">This protein specifically catalyzes the removal of signal peptides from prolipoproteins.</text>
    </comment>
    <comment type="catalytic activity">
        <reaction evidence="6">
            <text>Release of signal peptides from bacterial membrane prolipoproteins. Hydrolyzes -Xaa-Yaa-Zaa-|-(S,diacylglyceryl)Cys-, in which Xaa is hydrophobic (preferably Leu), and Yaa (Ala or Ser) and Zaa (Gly or Ala) have small, neutral side chains.</text>
            <dbReference type="EC" id="3.4.23.36"/>
        </reaction>
    </comment>
    <comment type="pathway">
        <text evidence="6">Protein modification; lipoprotein biosynthesis (signal peptide cleavage).</text>
    </comment>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="6">Cell inner membrane</location>
            <topology evidence="6">Multi-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="1 6 8">Belongs to the peptidase A8 family.</text>
    </comment>
    <comment type="caution">
        <text evidence="6">Lacks conserved residue(s) required for the propagation of feature annotation.</text>
    </comment>
    <dbReference type="EC" id="3.4.23.36" evidence="6"/>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX33126.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_0480"/>
    <dbReference type="PRIDE" id="A9BR68"/>
    <dbReference type="EnsemblBacteria" id="ABX33126">
        <property type="protein sequence ID" value="ABX33126"/>
        <property type="gene ID" value="Daci_0480"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_0480"/>
    <dbReference type="eggNOG" id="COG0597">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_083252_4_0_4"/>
    <dbReference type="OMA" id="GAPWWSL"/>
    <dbReference type="UniPathway" id="UPA00665"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005886">
        <property type="term" value="C:plasma membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="GO" id="GO:0004190">
        <property type="term" value="F:aspartic-type endopeptidase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006508">
        <property type="term" value="P:proteolysis"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_00161">
        <property type="entry name" value="LspA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001872">
        <property type="entry name" value="Peptidase_A8"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33695">
        <property type="entry name" value="PTHR33695"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01252">
        <property type="entry name" value="Peptidase_A8"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00781">
        <property type="entry name" value="LIPOSIGPTASE"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00077">
        <property type="entry name" value="lspA"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS00855">
        <property type="entry name" value="SPASE_II"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="3 6 7" id="KW-0064">Aspartyl protease</keyword>
    <keyword evidence="6" id="KW-0997">Cell inner membrane</keyword>
    <keyword evidence="2 6" id="KW-1003">Cell membrane</keyword>
    <keyword evidence="4 6 7" id="KW-0378">Hydrolase</keyword>
    <keyword evidence="9" id="KW-0449">Lipoprotein</keyword>
    <keyword evidence="5 6" id="KW-0472">Membrane</keyword>
    <keyword evidence="6 7" id="KW-0645">Protease</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="6" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="6" id="KW-1133">Transmembrane helix</keyword>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="59"/>
            <end position="77"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="86"/>
            <end position="104"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="124"/>
            <end position="144"/>
        </location>
    </feature>
    <feature type="active site" evidence="6">
        <location>
            <position position="111"/>
        </location>
    </feature>
    <feature type="active site" evidence="6">
        <location>
            <position position="129"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00006139"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022475"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022750"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022801"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="ARBA" id="ARBA00023136"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_00161"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="7">
        <source>
            <dbReference type="RuleBase" id="RU000594"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="8">
        <source>
            <dbReference type="RuleBase" id="RU004181"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="ABX33126.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="159" mass="16991" checksum="8E1C020AC8DD6E00" modified="2008-01-15" version="1">MYLLAVTVLAADVATKAAIVAWIPLYGSHEITPWFNIGHWLNPGAAFSFLAQAGGWQRGFFIVIGVAASAFLTWLIAREKTATPEAVGYAAILGGALGNVLDRVRHGAVVDWLDFHWGDWHWPAFNAADVGITLGAGLLLIAAFRGRGRNGADSHSPAR</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="68" xmlns="http://uniprot.org/uniprot">
    <accession>A9BRB8</accession>
    <name>A9BRB8_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="9">Flavodoxin/nitric oxide synthase</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="9" type="ordered locus">Daci_0530</name>
    </gene>
    <organism evidence="9 10">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="9 10" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="10" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="10">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="cofactor">
        <cofactor evidence="1">
            <name>FMN</name>
            <dbReference type="ChEBI" id="CHEBI:58210"/>
        </cofactor>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX33176.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_0530"/>
    <dbReference type="PRIDE" id="A9BRB8"/>
    <dbReference type="EnsemblBacteria" id="ABX33176">
        <property type="protein sequence ID" value="ABX33176"/>
        <property type="gene ID" value="Daci_0530"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_0530"/>
    <dbReference type="eggNOG" id="COG0369">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="eggNOG" id="COG3182">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_001570_17_4_4"/>
    <dbReference type="OMA" id="HRFLAMG"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016021">
        <property type="term" value="C:integral component of membrane"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0010181">
        <property type="term" value="F:FMN binding"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0016491">
        <property type="term" value="F:oxidoreductase activity"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.360">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.50.80">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017927">
        <property type="entry name" value="FAD-bd_FR_type"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001094">
        <property type="entry name" value="Flavdoxin-like"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR008254">
        <property type="entry name" value="Flavodoxin/NO_synth"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR001709">
        <property type="entry name" value="Flavoprot_Pyr_Nucl_cyt_Rdtase"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR029039">
        <property type="entry name" value="Flavoprotein-like_sf"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR039261">
        <property type="entry name" value="FNR_nucleotide-bd"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005625">
        <property type="entry name" value="PepSY-ass_TM"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR017938">
        <property type="entry name" value="Riboflavin_synthase-like_b-brl"/>
    </dbReference>
    <dbReference type="Pfam" id="PF00258">
        <property type="entry name" value="Flavodoxin_1"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03929">
        <property type="entry name" value="PepSY_TM"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00369">
        <property type="entry name" value="FLAVODOXIN"/>
    </dbReference>
    <dbReference type="PRINTS" id="PR00371">
        <property type="entry name" value="FPNCR"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52218">
        <property type="entry name" value="SSF52218"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF52343">
        <property type="entry name" value="SSF52343"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF63380">
        <property type="entry name" value="SSF63380"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS51384">
        <property type="entry name" value="FAD_FR"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS50902">
        <property type="entry name" value="FLAVODOXIN_LIKE"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-0249">Electron transport</keyword>
    <keyword evidence="2" id="KW-0285">Flavoprotein</keyword>
    <keyword evidence="3" id="KW-0288">FMN</keyword>
    <keyword evidence="6" id="KW-0472">Membrane</keyword>
    <keyword evidence="10" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="6" id="KW-0812">Transmembrane</keyword>
    <keyword evidence="6" id="KW-1133">Transmembrane helix</keyword>
    <keyword evidence="4" id="KW-0813">Transport</keyword>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="21"/>
            <end position="47"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="156"/>
            <end position="176"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="197"/>
            <end position="226"/>
        </location>
    </feature>
    <feature type="transmembrane region" description="Helical" evidence="6">
        <location>
            <begin position="358"/>
            <end position="378"/>
        </location>
    </feature>
    <feature type="domain" description="Flavodoxin-like" evidence="7">
        <location>
            <begin position="410"/>
            <end position="548"/>
        </location>
    </feature>
    <feature type="domain" description="FAD-binding FR-type" evidence="8">
        <location>
            <begin position="572"/>
            <end position="741"/>
        </location>
    </feature>
    <feature type="region of interest" description="Disordered" evidence="5">
        <location>
            <begin position="244"/>
            <end position="264"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00001917"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00022630"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="ARBA" id="ARBA00022643"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="4">
        <source>
            <dbReference type="ARBA" id="ARBA00022982"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="5">
        <source>
            <dbReference type="SAM" id="MobiDB-lite"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="6">
        <source>
            <dbReference type="SAM" id="Phobius"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="7">
        <source>
            <dbReference type="PROSITE" id="PS50902"/>
        </source>
    </evidence>
    <evidence type="ECO:0000259" key="8">
        <source>
            <dbReference type="PROSITE" id="PS51384"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="9">
        <source>
            <dbReference type="EMBL" id="ABX33176.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="10">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="885" mass="95387" checksum="6629245240F1E0BA" modified="2008-01-15" version="1"> </sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="55" xmlns="http://uniprot.org/uniprot">
    <accession>A9BRH3</accession>
    <name>A9BRH3_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="4">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="4" type="ordered locus">Daci_0688</name>
    </gene>
    <organism evidence="4 5">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="4 5" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="5" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="5">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Periplasm</location>
        </subcellularLocation>
    </comment>
    <comment type="similarity">
        <text evidence="2">Belongs to the UPF0065 (bug) family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX33334.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012202620.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_0688"/>
    <dbReference type="PRIDE" id="A9BRH3"/>
    <dbReference type="EnsemblBacteria" id="ABX33334">
        <property type="protein sequence ID" value="ABX33334"/>
        <property type="gene ID" value="Daci_0688"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_0688"/>
    <dbReference type="eggNOG" id="COG3181">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_045683_0_0_4"/>
    <dbReference type="OMA" id="LGRFPMI"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0042597">
        <property type="term" value="C:periplasmic space"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-SubCell"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.190.150">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR005064">
        <property type="entry name" value="BUG"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR042100">
        <property type="entry name" value="Bug_dom1"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR42928">
        <property type="entry name" value="PTHR42928"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03401">
        <property type="entry name" value="TctC"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF017082">
        <property type="entry name" value="YflP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword evidence="5" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="3" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="3">
        <location>
            <begin position="1"/>
            <end position="25"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5002735014" evidence="3">
        <location>
            <begin position="26"/>
            <end position="326"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00004418"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="ARBA" id="ARBA00006987"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="3">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="EMBL" id="ABX33334.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="5">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="326" mass="33669" checksum="D1D58C2DCADA7D7A" modified="2008-01-15" version="1">MHKRLFLTSLAAGLLSAAALPGALAQDGFPSRNVRWIVPYAAGGGSDFLARTIGQAWGGQVHQPIVVDNRPGGNTAIGASETARAAADGYTVLSADNGTLVFNPVLYKSLSYNPARDLAPVTLMGRFPMILVAGPGMAAATAKDFLAQARTSKDGVNYASAGAGSPHHLAMELLRVEAGLKLVHAPYKGAAPALGDVAGGQVPVMMVDLAAGAGFIKGGKVRPLAVANATRLPQLPDVPTFAELGLPKVQAAALVGLVAPARTPAPVIAALHRQVVAAINEPAVRQKLVDFGVEPVGNTPEQFAALLASESTRWHQLIRDQNITLD</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="43" xmlns="http://uniprot.org/uniprot">
    <accession>A9BRP2</accession>
    <name>A9BRP2_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Daci_0963</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="2" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX33609.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012202895.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_0963"/>
    <dbReference type="PRIDE" id="A9BRP2"/>
    <dbReference type="EnsemblBacteria" id="ABX33609">
        <property type="protein sequence ID" value="ABX33609"/>
        <property type="gene ID" value="Daci_0963"/>
    </dbReference>
    <dbReference type="GeneID" id="60685527"/>
    <dbReference type="KEGG" id="dac:Daci_0963"/>
    <dbReference type="eggNOG" id="ENOG5032Y7K">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_198214_0_0_4"/>
    <dbReference type="OMA" id="YRKEMAT"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ABX33609.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="73" mass="8083" checksum="B76DC8521CB49339" modified="2008-01-15" version="1">MAADRYLEPHQARERAPTLMEDLLGDSIERAFGEGVQTLPELVAYLNRSGPAGENGQAWTEDSFQALMARLGY</sequence>
</entry>
<entry dataset="Swiss-Prot" created="2009-04-14" modified="2022-08-03" version="70" xmlns="http://uniprot.org/uniprot">
    <accession>A9BRX6</accession>
    <name>RL17_DELAS</name>
    <protein>
        <recommendedName>
            <fullName evidence="1">50S ribosomal protein L17</fullName>
        </recommendedName>
    </protein>
    <gene>
        <name evidence="1" type="primary">rplQ</name>
        <name type="ordered locus">Daci_1048</name>
    </gene>
    <organism>
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference key="1">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain>DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="subunit">
        <text evidence="1">Part of the 50S ribosomal subunit. Contacts protein L32.</text>
    </comment>
    <comment type="similarity">
        <text evidence="1">Belongs to the bacterial ribosomal protein bL17 family.</text>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX33693.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012202979.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="AlphaFoldDB" id="A9BRX6"/>
    <dbReference type="SMR" id="A9BRX6"/>
    <dbReference type="STRING" id="398578.Daci_1048"/>
    <dbReference type="PRIDE" id="A9BRX6"/>
    <dbReference type="EnsemblBacteria" id="ABX33693">
        <property type="protein sequence ID" value="ABX33693"/>
        <property type="gene ID" value="Daci_1048"/>
    </dbReference>
    <dbReference type="GeneID" id="60685609"/>
    <dbReference type="KEGG" id="dac:Daci_1048"/>
    <dbReference type="eggNOG" id="COG0203">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_074407_2_0_4"/>
    <dbReference type="OMA" id="YAVTELF"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0005840">
        <property type="term" value="C:ribosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-KW"/>
    </dbReference>
    <dbReference type="GO" id="GO:0003735">
        <property type="term" value="F:structural constituent of ribosome"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0006412">
        <property type="term" value="P:translation"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProtKB-UniRule"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.90.1030.10">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="HAMAP" id="MF_01368">
        <property type="entry name" value="Ribosomal_L17"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR000456">
        <property type="entry name" value="Ribosomal_L17"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR036373">
        <property type="entry name" value="Ribosomal_L17_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR14413">
        <property type="entry name" value="PTHR14413"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01196">
        <property type="entry name" value="Ribosomal_L17"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="SUPFAM" id="SSF64263">
        <property type="entry name" value="SSF64263"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00059">
        <property type="entry name" value="L17"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PROSITE" id="PS01167">
        <property type="entry name" value="RIBOSOMAL_L17"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="inferred from homology"/>
    <keyword id="KW-1185">Reference proteome</keyword>
    <keyword id="KW-0687">Ribonucleoprotein</keyword>
    <keyword id="KW-0689">Ribosomal protein</keyword>
    <feature type="chain" id="PRO_1000144411" description="50S ribosomal protein L17">
        <location>
            <begin position="1"/>
            <end position="130"/>
        </location>
    </feature>
    <evidence type="ECO:0000255" key="1">
        <source>
            <dbReference type="HAMAP-Rule" id="MF_01368"/>
        </source>
    </evidence>
    <sequence length="130" mass="14739" checksum="3665353E04BBD9CD" modified="2008-01-15" version="1">MRHGHGLRKLNRTSSHRLAMLKNMMNSLIEHEAIKTTVPKAKELRRVIEPMITLAKVDTVANRRLAFDRLRDRDSVTKLFNELGPRFAKRPGGYTRILKMGFRVGDNAPMAFVELVERAEEGAAEAKAAE</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="42" xmlns="http://uniprot.org/uniprot">
    <accession>A9BRX7</accession>
    <name>A9BRX7_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="1">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="1" type="ordered locus">Daci_1049</name>
    </gene>
    <organism evidence="1 2">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="1 2" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="2" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="2">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX33694.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012202980.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="PRIDE" id="A9BRX7"/>
    <dbReference type="EnsemblBacteria" id="ABX33694">
        <property type="protein sequence ID" value="ABX33694"/>
        <property type="gene ID" value="Daci_1049"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_1049"/>
    <dbReference type="eggNOG" id="ENOG50333A9">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_2059462_0_0_4"/>
    <dbReference type="OMA" id="FLHFQMQ"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="2" id="KW-1185">Reference proteome</keyword>
    <evidence type="ECO:0000313" key="1">
        <source>
            <dbReference type="EMBL" id="ABX33694.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="105" mass="11823" checksum="931E850B2B441F03" modified="2008-01-15" version="1">MPANRFLPEEWECRLQEIDLEIARHAVICKIPLLQAGVVERVLANDASVCGAEHEAAFKTLRGLLYMHYTELLHISEVLSPEVAQEIAHRVRLRLGQRIGNQLGG</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="48" xmlns="http://uniprot.org/uniprot">
    <accession>A9BSE7</accession>
    <name>A9BSE7_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="2">Hemerythrin HHE cation binding domain protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="2" type="ordered locus">Daci_1116</name>
    </gene>
    <organism evidence="2 3">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="2 3" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="3" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="3">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX33761.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012203047.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_1116"/>
    <dbReference type="PRIDE" id="A9BSE7"/>
    <dbReference type="EnsemblBacteria" id="ABX33761">
        <property type="protein sequence ID" value="ABX33761"/>
        <property type="gene ID" value="Daci_1116"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_1116"/>
    <dbReference type="eggNOG" id="COG3945">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_113668_0_0_4"/>
    <dbReference type="OMA" id="PHHHADE"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR012312">
        <property type="entry name" value="Hemerythrin-like"/>
    </dbReference>
    <dbReference type="Pfam" id="PF01814">
        <property type="entry name" value="Hemerythrin"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="3" id="KW-1185">Reference proteome</keyword>
    <feature type="domain" description="Hemerythrin" evidence="1">
        <location>
            <begin position="27"/>
            <end position="164"/>
        </location>
    </feature>
    <evidence type="ECO:0000259" key="1">
        <source>
            <dbReference type="Pfam" id="PF01814"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="2">
        <source>
            <dbReference type="EMBL" id="ABX33761.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="192" mass="21476" checksum="D2EC0A72B5E7F6D9" modified="2008-01-15" version="1">MKVAVAPRPQGDAVPGWRAPGTGFDQPFEMLEACHERVLRMLALLDRLRVHLQTKGCDDSARHAARDILRYFDQAAPLHHEDEELHVFPPLLEQGDAQTVALVQRLQREHGLMSADWALARQPLLDMAEGRCQGFGAADEAVFERFAACYASHVENEERLAYPQARGLLPEATQAAMGREMAVRRGADLSRR</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="63" xmlns="http://uniprot.org/uniprot">
    <accession>A9BSJ9</accession>
    <name>A9BSJ9_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="3">TRAP dicarboxylate transporter, DctP subunit</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="3" type="ordered locus">Daci_1360</name>
    </gene>
    <organism evidence="3 4">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="3 4" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="4" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="4">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX34004.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012203290.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_1360"/>
    <dbReference type="PRIDE" id="A9BSJ9"/>
    <dbReference type="EnsemblBacteria" id="ABX34004">
        <property type="protein sequence ID" value="ABX34004"/>
        <property type="gene ID" value="Daci_1360"/>
    </dbReference>
    <dbReference type="KEGG" id="dac:Daci_1360"/>
    <dbReference type="eggNOG" id="COG1638">
        <property type="taxonomic scope" value="Bacteria"/>
    </dbReference>
    <dbReference type="HOGENOM" id="CLU_036176_1_3_4"/>
    <dbReference type="OMA" id="FRIMPSE"/>
    <dbReference type="Proteomes" id="UP000000784">
        <property type="component" value="Chromosome"/>
    </dbReference>
    <dbReference type="GO" id="GO:0030288">
        <property type="term" value="C:outer membrane-bounded periplasmic space"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="GO" id="GO:0071702">
        <property type="term" value="P:organic substance transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="UniProt"/>
    </dbReference>
    <dbReference type="GO" id="GO:0055085">
        <property type="term" value="P:transmembrane transport"/>
        <property type="evidence" value="ECO:0007669"/>
        <property type="project" value="InterPro"/>
    </dbReference>
    <dbReference type="Gene3D" id="3.40.190.170">
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR018389">
        <property type="entry name" value="DctP_fam"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR004682">
        <property type="entry name" value="TRAP_DctP"/>
    </dbReference>
    <dbReference type="InterPro" id="IPR038404">
        <property type="entry name" value="TRAP_DctP_sf"/>
    </dbReference>
    <dbReference type="PANTHER" id="PTHR33376">
        <property type="entry name" value="PTHR33376"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="Pfam" id="PF03480">
        <property type="entry name" value="DctP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="PIRSF" id="PIRSF006470">
        <property type="entry name" value="DctB"/>
        <property type="match status" value="1"/>
    </dbReference>
    <dbReference type="TIGRFAMs" id="TIGR00787">
        <property type="entry name" value="dctP"/>
        <property type="match status" value="1"/>
    </dbReference>
    <proteinExistence type="predicted"/>
    <keyword evidence="4" id="KW-1185">Reference proteome</keyword>
    <keyword evidence="1 2" id="KW-0732">Signal</keyword>
    <feature type="signal peptide" evidence="2">
        <location>
            <begin position="1"/>
            <end position="26"/>
        </location>
    </feature>
    <feature type="chain" id="PRO_5002733044" evidence="2">
        <location>
            <begin position="27"/>
            <end position="347"/>
        </location>
    </feature>
    <evidence type="ECO:0000256" key="1">
        <source>
            <dbReference type="ARBA" id="ARBA00022729"/>
        </source>
    </evidence>
    <evidence type="ECO:0000256" key="2">
        <source>
            <dbReference type="SAM" id="SignalP"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="3">
        <source>
            <dbReference type="EMBL" id="ABX34004.1"/>
        </source>
    </evidence>
    <evidence type="ECO:0000313" key="4">
        <source>
            <dbReference type="Proteomes" id="UP000000784"/>
        </source>
    </evidence>
    <sequence length="347" mass="37785" checksum="C3BEA28EAA78E148" modified="2008-01-15" version="1">MKLRTFLASGLAAAAALALSSAPAVAQTPAKYKSEYRMSLVLGTAFPWGKGGEIWANKVRERTNGRINIKLYPGVSLIQGDQTREFSALRQGVIDMAVGSTLNWSPQIKELNLFALPFLMPDYAAADALTHGEPGKRLFQRLEKAGVVPLAWGENGYREISNSKHAIKTPADLKGLKIRVVGSPLFLDTFTALGANPTQMSWADAQPAMASGAVDGQENPVSVYMAAKLQSVGQKHLTLWGYINDPLIFVVNKDIWATWTKEDQDIVRQAAVDAAKEQIVIARKGMIEADKPLLKDLAANGVTVTQLTPAEREAFVKATRPVYDKWKQQVGTDLVDVAEKAIAARTR</sequence>
</entry>
<entry dataset="TrEMBL" created="2008-01-15" modified="2022-08-03" version="52" xmlns="http://uniprot.org/uniprot">
    <accession>A9BSU0</accession>
    <name>A9BSU0_DELAS</name>
    <protein>
        <submittedName>
            <fullName evidence="7">Uncharacterized protein</fullName>
        </submittedName>
    </protein>
    <gene>
        <name evidence="7" type="ordered locus">Daci_1657</name>
    </gene>
    <organism evidence="7 8">
        <name type="scientific">Delftia acidovorans (strain DSM 14801 / SPH-1)</name>
        <dbReference type="NCBI Taxonomy" id="398578"/>
        <lineage>
            <taxon>Bacteria</taxon>
            <taxon>Proteobacteria</taxon>
            <taxon>Betaproteobacteria</taxon>
            <taxon>Burkholderiales</taxon>
            <taxon>Comamonadaceae</taxon>
            <taxon>Delftia</taxon>
        </lineage>
    </organism>
    <reference evidence="7 8" key="1">
        <citation type="journal article" date="2004" name="Appl. Environ. Microbiol." volume="70" first="4053" last="4063">
            <title>Mineralization of individual congeners of linear alkylbenzenesulfonate by defined pairs of heterotrophic bacteria.</title>
            <authorList>
                <person name="Schleheck D."/>
                <person name="Knepper T.P."/>
                <person name="Fischer K."/>
                <person name="Cook A.M."/>
            </authorList>
            <dbReference type="PubMed" id="15240283"/>
            <dbReference type="DOI" id="10.1128/AEM.70.7.4053-4063.2004"/>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <reference evidence="8" key="2">
        <citation type="submission" date="2007-11" db="EMBL/GenBank/DDBJ databases">
            <title>Complete sequence of Delftia acidovorans DSM 14801 / SPH-1.</title>
            <authorList>
                <person name="Copeland A."/>
                <person name="Lucas S."/>
                <person name="Lapidus A."/>
                <person name="Barry K."/>
                <person name="Glavina del Rio T."/>
                <person name="Dalin E."/>
                <person name="Tice H."/>
                <person name="Pitluck S."/>
                <person name="Lowry S."/>
                <person name="Clum A."/>
                <person name="Schmutz J."/>
                <person name="Larimer F."/>
                <person name="Land M."/>
                <person name="Hauser L."/>
                <person name="Kyrpides N."/>
                <person name="Kim E."/>
                <person name="Schleheck D."/>
                <person name="Richardson P."/>
            </authorList>
        </citation>
        <scope>NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]</scope>
        <source>
            <strain evidence="8">DSM 14801 / SPH-1</strain>
        </source>
    </reference>
    <comment type="subcellular location">
        <subcellularLocation>
            <location evidence="1">Membrane</location>
            <topology evidence="1">Single-pass membrane protein</topology>
        </subcellularLocation>
    </comment>
    <dbReference type="EMBL" id="CP000884">
        <property type="protein sequence ID" value="ABX34300.1"/>
        <property type="molecule type" value="Genomic_DNA"/>
    </dbReference>
    <dbReference type="RefSeq" id="WP_012203585.1">
        <property type="nucleotide sequence ID" value="NC_010002.1"/>
    </dbReference>
    <dbReference type="STRING" id="398578.Daci_1657"/>
    <dbReference type="PRIDE" id="A9BSU0"/>
    <dbReference type="EnsemblBacteria" id="ABX34300">
        <property type="protein sequence ID" value="ABX34300